Citrus Sinensis ID: 046398

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790----
Protein Sequence
MKSTMSVSVALVFLELFAISSFCSGNSDVGCTDSEREALLKLKQDLKDPSNRLGSWVVDGDCCKWAEVVCSNLTGHVLQLSLRNPFRNDLRYATTEYEDYMRSMLSGNVNPSLVDLKHLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRCLDLSWSEYALQVHSFSWLSGQIPNRLGNLTSLRHLDLSANKFNSTTAGWLSKFNHLEFLSLSSNGLQGTISSIGLENLTSIKTIDLSLNFELGGPIPTSFVRLCELTSIDVSDVKLSQDLSQVLDILSACGASALESLVFSSSQISGHLTSQLGQFKSLRTLSLDDNCISGPLPPALGDLSSLTRLDLSRNMLNGSIPLSLGKISHLEYLDLSNNKMNGTLSEIHFVNLTKLTWFSASGNSLILQVNPNWVPPFQLKTLLLMSCHLGPQFPSWLHSQKNLSVLDISNARISDTIPRWFWNSIFQLSGIIPESFKNFSNLEVLNLGDNEFVGKIPTWMGEGFTSLLILILRSNKFDGFLPIQLCRLTSLQILDVANNSLSGTMPGCVNNFSAMATIDSSHQSNAMSYFEVTAYDCEVLEDASIVMKGSMVEYNSILNLVRIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQIPENIGNLISIESLDFSTNQLSSKISQSMSSLSFLNHLNVSNNLLTGKIPSSTQLQSFDASCFVGNNLCGPPLPSCTENNARAPKDPNGNAEQDEDEVDWLLYVSIAVGFVVGFWCFIGPLLLNRGWRYKYCRFLDGCMDRFGCFVSKF
Secondary Structure (PSIPRED)
ccccHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHccccccccccccccccccccccccEEEccccccEEEEEccccccccccccccccccccccccEEEccccccccccccEEEccccccccccccccccccccccEEEcccccccccccccccccccccEEEcccccccccccccccccccccccccccccccEEEcccccccccccHHccccccccEEEccccccccccccccccccccccEEEccccccccccccccccccccccEEEcccccccccccHHHHHHcccccccccEEEcccccccccccccccccccccEEEcccccccccccccccccccccEEEcccccccccccccccccccccEEEcccccccEEcccccccccccccEEEccccEEEEEccccccccccccEEEccccccccccHHHHcccccccEEEccccccccccccHHHccccEEEEcccHHccccccccEEEcccccccccccHHHHHHcccccEEEccccccEEEccccccccccccEEEcccccccccccHHHHHHcccccccccccccccccccccccccEEEEEEEEEEEccccccccccccccEEEcccccccccccHHHHccccccccccccccccccccccccccccccEEEcccccccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEHHHHHHHHHHHHHHHHcccHHHHHHHHHHHcccEEEEEEEEc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHccccccccccccccccccccEEEEEcccccEEEEEEcccccccccccccccEEEcccccccccccHHHccccccEEEEccccccccccccHHHccccccEEEEEccccccccccHHHcccccccEEEEccccccccccccccccccccHHHccccccEEEEcccccccccccHHHccccccEEEEEccccccccccHHHHccccccEEEEEcccccccccccHHHcccccccEEEEccccccccccHHHccccHccccccEEEEEccccccccccHHHccccccEEEEEccccccccccHHHccccccEEEEEccccccccccHHHcccccccEEEcccccccccccHHHHccccccEEEEEccccccccccHHHccccccEEEEcccccccccccHHHccccccEEEEcccccccccccHHHccccccccccccHHHccccccEEEEcccccccccccHHHHHHHHcccEEEcccccccccccHHHccccccEEEEcccccccccccHHHcccccccEEEccccccccccccccccccEEEEcccccccccccHHHccccccEEEEcccccEEccccHHHHHcccccEEEEEEEccEEEccHHHHHcccccEEEccccEEEccccHHHHHcccccEEEccccccEEEccHHcccccccHHHHccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEcc
Coil and Loop (DISEMBL)
MKSTMSVSVALVFLELFAISsfcsgnsdvgctdSEREALLKLKQdlkdpsnrlgswvvdgdcckwAEVVCSNLTGHVLQLslrnpfrndlRYATTEYEDYMRSMlsgnvnpslvdlkhlthldlsgndfqgiripkylgsLKNLRYLnlsgaefagiiphqlgnlsnlrcldlswsEYALQVHSFSwlsgqipnrlgnltslrhldlsankfnsttagwlskfnhleflslssnglqgtissiglenltsiktidlslnfelggpiptsFVRLCEltsidvsdvklSQDLSQVLDILSACGASALESLVfsssqisghltsqlgqfkslrtlslddncisgplppalgdlssltrldlsrnmlngsiplslgkishleyldlsnnkmngtlseihfvnltkltwfsasgnslilqvnpnwvppfqLKTLLLMschlgpqfpswlhsqknlsvldisnarisdtiprwFWNSIfqlsgiipesfknfsnlevlnlgdnefvgkiptwmgeGFTSLLILILRsnkfdgflpiqlcrltslQILDVAnnslsgtmpgcvnnfsamatidsshqsnamsyfeVTAYDCEVLEDASIVMKGSMVEYNSILNLVRIIDvsknnfsgeipMELTYLRGLqslnlshniftgqipenignlisiesldfstnQLSSKISQSMSSLSFLNHLnvsnnlltgkipsstqlqsfdascfvgnnlcgpplpsctennarapkdpngnaeqdedeVDWLLYVSIAVGFVVGFWCFigplllnrgwryKYCRFLDgcmdrfgcfvskf
Flexible Loop (DISEMBL)
MKSTMSVSVALVFLELFAISSFCSGNSDVGCTDSEREALLKLKqdlkdpsnrlgSWVVDGDCCKWAEVVCSNLTGHvlqlslrnpfrndLRYATTEYEDYMRSMLSGNVNPSLVDLKHLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRCLDLSWSEYALQVHSFSWLSGQIPNRLGNLTSLRHLDLSANKFNSTTAGWLSKFNHLEFLSLSSNGLQGTISSIGLENLTSIKTIDLSLNFELGGPIPTSFVRLCELTSIDVSDVKLSQDLSQVLDILSACGASALESLVFSSSQISGHLTSQLGQFKSLRTLSLDDNCISGPLPPALGDLSSLTRLDLSRNMLNGSIPLSLGKISHLEYLDLSNNKMNGTLSEIHFVNLTKLTWFSASGNSLILQVNPNWVPPFQLKTLLLMSCHLGPQFPSWLHSQKNLSVLDISNARISDTIPRWFWNSIFQLSGIIPESFKNFSNLEVLNLGDNEFVGKIPTWMGEGFTSLLILILRSNKFDGFLPIQLCRLTSLQILDVANNSLSGTMPGCVNNFSAMATIDSSHQSNAMSYFEVTAYDCEVLEDASIVMKGSMVEYNSILNLVRIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQIPENIGNLISIESLDFSTNQLSSKISQSMSSLSFLNHLNVSNNLLTGKIPSSTQLQSFDASCFVGNNLCGPPLPSCTENNARAPKDPNGNAEQDEDEVDWLLYVSIAVGFVVGFWCFIGPLLLNRGWRYKYCRFLDGCMDRFGCFVSKF
Low Complexity Region (SEG)
MKSTMSVSVALVFLELFAISSFCSGNSDVGCTDSEREALLKLKQDLKDPSNRLGSWVVDGDCCKWAEVVCSNLTGHVLQLSLRNPFRNDLRYATTEYEDYMRSMLSGNVNPSLVDLKHLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRCLDLSWSEYALQVHSFSWLSGQIPNRLGNLTSLRHLDLSANKFNSTTAGWLSKFNHLEFLSLSSNGLQGTISSIGLENLTSIKTIDLSLNFELGGPIPTSFVRLCELTSIDVSDVKLSQDLSQVLDILSACGASALESLVFSSSQISGHLTSQLGQFKSLRTLSLDDNCISGPLPPAlgdlssltrldlsrNMLNGSIPLSLGKISHLEYLDLSNNKMNGTLSEIHFVNLTKLTWFSASGNSLILQVNPNWVPPFQLKTLLLMSCHLGPQFPSWLHSQKNLSVLDISNARISDTIPRWFWNSIFQLSGIIPESFKNFSNLEVLNLGDNEFVGKIPTWMGEGFTSLLILILRSNKFDGFLPIQLCRLTSLQILDVANNSLSGTMPGCVNNFSAMATIDSSHQSNAMSYFEVTAYDCEVLEDASIVMKGSMVEYNSILNLVRIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQIPENIGNLISIESLDFSTNQlsskisqsmsslsflNHLNVSNNLLTGKIPSSTQLQSFDASCFVGNNLCGPPLPSCTENNARAPKDPNGNAEQDEDEVDWLLYVSIAVGFVVGFWCFIGPLLLNRGWRYKYCRFLDGCMDRFGCFVSKF
Disordered region (IsUnstruct)
******VSVALVFLELFAISSFCSGNSDVGCTD****ALLKL********NRLGSWVVDGDCCKWAEVVCSNLTGHVLQLSLRNPFRNDLRYATTEYEDYMRSMLSGNVNPSLVDLKHLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRCLDLSWSEYALQVHSFSWLSGQIPNRLGNLTSLRHLDLSANKFNSTTAGWLSKFNHLEFLSLSSNGLQGTISSIGLENLTSIKTIDLSLNFELGGPIPTSFVRLCELTSIDVSDVKLSQDLSQVLDILSACGASALESLVFSSSQISGHLTSQLGQFKSLRTLSLDDNCISGPLPPALGDLSSLTRLDLSRNMLNGSIPLSLGKISHLEYLDLSNNKMNGTLSEIHFVNLTKLTWFSASGNSLILQVNPNWVPPFQLKTLLLMSCHLGPQFPSWLHSQKNLSVLDISNARISDTIPRWFWNSIFQLSGIIPESFKNFSNLEVLNLGDNEFVGKIPTWMGEGFTSLLILILRSNKFDGFLPIQLCRLTSLQILDVANNSLSGTMPGCVNNFS***************YFEVTAYDCEVLEDASIVMKGSMVEYNSILNLVRIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQIPENIGNLISIESLDFS***************SFLNHLNVSNNLLTGKIPSSTQLQSFDASCFVGNNLCG***************************VDWLLYVSIAVGFVVGFWCFIGPLLLNRGWRYKYCRFLDGCMDRFGCFV***
Disordered Region (DISOPRED)
******V***LVFLELFAISSFCS**********EREALLKLKQDLKDPSNRLGSWVVDGDCCKWAEVVCSNLTGHVLQLSLRNPFRNDLRYATTEYEDYMRSMLSGNVNPSLVDLKHLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRCLDLSWSEYALQVHSFSWLSGQIPNRLGNLTSLRHLDLSANKFNSTTAGWLSKFNHLEFLSLSSNGLQGTISSIGLENLTSIKTIDLSLNFELGGPIPTSFVRLCELTSIDVSDVKLSQDLSQVLDILSACGASALESLVFSSSQISGHLTSQLGQFKSLRTLSLDDNCISGPLPPALGDLSSLTRLDLSRNMLNGSIPLSLGKISHLEYLDLSNNKMNGTLSEIHFVNLTKLTWFSASGNSLILQVNPNWVPPFQLKTLLLMSCHLGPQFPSWLHSQKNLSVLDISNARISDTIPRWFWNSIFQLSGIIPESFKNFSNLEVLNLGDNEFVGKIPTWMGEGFTSLLILILRSNKFDGFLPIQLCRLTSLQILDVANNSLSGTMPGCVNNFSAMATI***********FEVTAYDCEVLEDASIVMKGSMVEYNSILNLVRIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQIPENIGNLISIESLDFSTNQLSSKISQSMSSLSFLNHLNVSNNLLTGKIPSSTQLQSFDASCFVGNNLCGP****************************WLLYVSIAVGFVVGFWCFIGPLLLNRGWRYKYCRFLDGCMDRFGCFVSKF
Disordered Region (DISEMBL)
MKSTMSVSVALVFLELFAISSFCSGNSDVGCTDSEREALLKLKQDLKDPSNRLGSWVVDGDCCKWAEVVCSNLTGHVLQLSLRNPFRNDLRYATTEYEDYMRSMLSGNVNPSLVDLKHLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRCLDLSWSEYALQVHSFSWLSGQIPNRLGNLTSLRHLDLSANKFNSTTAGWLSKFNHLEFLSLSSNGLQGTISSIGLENLTSIKTIDLSLNFELGGPIPTSFVRLCELTSIDVSDVKLSQDLSQVLDILSACGASALESLVFSSSQISGHLTSQLGQFKSLRTLSLDDNCISGPLPPALGDLSSLTRLDLSRNMLNGSIPLSLGKISHLEYLDLSNNKMNGTLSEIHFVNLTKLTWFSASGNSLILQVNPNWVPPFQLKTLLLMSCHLGPQFPSWLHSQKNLSVLDISNARISDTIPRWFWNSIFQLSGIIPESFKNFSNLEVLNLGDNEFVGKIPTWMGEGFTSLLILILRSNKFDGFLPIQLCRLTSLQILDVANNSLSGTMPGCVNNFSAMATIDSSHQSNAMSYFEVTAYDCEVLEDASIVMKGSMVEYNSILNLVRIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQIPENIGNLISIESLDFSTNQLSSKISQSMSSLSFLNHLNVSNNLLTGKIPSSTQLQSFDASCFVGNNLCGPPLPSCTENNARAPKDPNGNAEQDEDEVDWLLYVSIAVGFVVGFWCFIGPLLLNRGWRYKYCRFLDGCMDRFGCFVSKF
Disordered Region (DISPRO)
*KSTMSVSVALVFLELFAISSFCSGNSDVGCTDSEREALLKLKQDLKDPSNRLGSWVVDGDCCKWAEVVCSNLTGHVLQLSLRNPFRNDLRYATTEYEDYMRSMLSGNVNPSLVDLKHLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRCLDLSWSEYALQVHSFSWLSGQIPNRLGNLTSLRHLDLSANKFNSTTAGWLSKFNHLEFLSLSSNGLQGTISSIGLENLTSIKTIDLSLNFELGGPIPTSFVRLCELTSIDVSDVKLSQDLSQVLDILSACGASALESLVFSSSQISGHLTSQLGQFKSLRTLSLDDNCISGPLPPALGDLSSLTRLDLSRNMLNGSIPLSLGKISHLEYLDLSNNKMNGTLSEIHFVNLTKLTWFSASGNSLILQVNPNWVPPFQLKTLLLMSCHLGPQFPSWLHSQKNLSVLDISNARISDTIPRWFWNSIFQLSGIIPESFKNFSNLEVLNLGDNEFVGKIPTWMGEGFTSLLILILRSNKFDGFLPIQLCRLTSLQILDVANNSLSGTMPGCVNNFSAMATIDSSHQSNAMSYFEVTAYDCEVLEDASIVMKGSMVEYNSILNLVRIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQIPENIGNLISIESLDFSTNQLSSKISQSMSSLSFLNHLNVSNNLLTGKIPSSTQLQSFDASCFVGNNLCGPPLPSCTE****************EDEVDWLLYVSIAVGFVVGFWCFIGPLLLNRGWRYKYCRFLDGCMDRFGCFVSKF
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKSTMSVSVALVFLELFAISSFCSGNSDVGCTDSEREALLKLKQDLKDPSNRLGSWVVDGDCCKWAEVVCSNLTGHVLQLSLRNPFRNDLRYATTEYEDYMRSMLSGNVNPSLVDLKHLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRCLDLSWSEYALQVHSFSWLSGQIPNRLGNLTSLRHLDLSANKFNSTTAGWLSKFNHLEFLSLSSNGLQGTISSIGLENLTSIKTIDLSLNFELGGPIPTSFVRLCELTSIDVSDVKLSQDLSQVLDILSACGASALESLVFSSSQISGHLTSQLGQFKSLRTLSLDDNCISGPLPPALGDLSSLTRLDLSRNMLNGSIPLSLGKISHLEYLDLSNNKMNGTLSEIHFVNLTKLTWFSASGNSLILQVNPNWVPPFQLKTLLLMSCHLGPQFPSWLHSQKNLSVLDISNARISDTIPRWFWNSIFQLSGIIPESFKNFSNLEVLNLGDNEFVGKIPTWMGEGFTSLLILILRSNKFDGFLPIQLCRLTSLQILDVANNSLSGTMPGCVNNFSAMATIDSSHQSNAMSYFEVTAYDCEVLEDASIVMKGSMVEYNSILNLVRIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQIPENIGNLISIESLDFSTNQLSSKISQSMSSLSFLNHLNVSNNLLTGKIPSSTQLQSFDASCFVGNNLCGPPLPSCTENNARAPKDPNGNAEQDEDEVDWLLYVSIAVGFVVGFWCFIGPLLLNRGWRYKYCRFLDGCMDRFGCFVSKF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	794	2.2.26 [Sep-21-2011]
Q9C9H7	847	Receptor-like protein 12	no	no	0.910	0.853	0.302	1e-68
Q9FL28	1173	LRR receptor-like serine/	no	no	0.836	0.566	0.276	5e-60
Q9LVP0	1102	Probable leucine-rich rep	no	no	0.829	0.598	0.301	2e-57
Q9FZ59	1088	Leucine-rich repeat recep	no	no	0.749	0.546	0.309	9e-56
Q9FIZ3	1252	LRR receptor-like serine/	no	no	0.738	0.468	0.294	2e-54
Q9LP24	1120	Probable leucine-rich rep	no	no	0.866	0.614	0.285	3e-54
O49318	1124	Probable leucine-rich rep	no	no	0.867	0.612	0.285	1e-53
Q9ZPS9	1143	Serine/threonine-protein	no	no	0.722	0.502	0.293	1e-52
Q8VZG8	1045	Probable LRR receptor-lik	no	no	0.811	0.616	0.292	1e-52
C0LGQ5	1249	LRR receptor-like serine/	no	no	0.845	0.537	0.285	2e-52

>sp|Q9C9H7|RLP12_ARATH Receptor-like protein 12 OS=Arabidopsis thaliana GN=RLP12 PE=2 SV=2

 Score =  261 bits (668), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 251/831 (30%), Positives = 386/831 (46%), Gaps = 108/831 (12%)

Query: 8   SVALVFLELFAISSFCSGNSDVGCTDSEREALLKLKQDLKDPSNR--------LGSWVVD 59
           S  ++FL L   S   + +S   C D +R+ALL+ + +   P N          G W   
Sbjct: 13  SRIIIFLSLLVHS--LASSSPHFCRDDQRDALLEFRGEF--PINASWHIMNQWRGPWNKS 68

Query: 60  GDCCKWAEVVCSNLTGHVLQLSLRNPFRND-LRYATTEYE-DYMRSM------LSGNVNP 111
            DCC W  V C++ +G V+ L + N F N+ L+  ++ ++  Y+R +      L G +  
Sbjct: 69  TDCCLWNGVTCNDKSGQVISLDIPNTFLNNYLKTNSSLFKLQYLRHLDLTNCNLYGEIPS 128

Query: 112 SLVDLKHLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRCL 171
           SL +L HLT ++L  N F G  IP  +G+L  LR+L L+     G IP  LGNLS L  L
Sbjct: 129 SLGNLSHLTLVNLYFNKFVG-EIPASIGNLNQLRHLILANNVLTGEIPSSLGNLSRLVNL 187

Query: 172 DLSWSEYALQVHSFSWLSGQIPNRLGNLTSLRHLDLSANKFNSTTAGWLSKFNHLEFLSL 231
           +L  +           L G+IP+ +G+L  LR+L L++N         L   ++L  L L
Sbjct: 188 ELFSNR----------LVGKIPDSIGDLKQLRNLSLASNNLIGEIPSSLGNLSNLVHLVL 237

Query: 232 SSNGLQGTI-SSIGLENLTSIKTIDLSLNFELGGPIPTSFVRLCELTSIDVS-------- 282
           + N L G + +SIG  NL  ++ +    N  L G IP SF  L +L+   +S        
Sbjct: 238 THNQLVGEVPASIG--NLIELRVMSFE-NNSLSGNIPISFANLTKLSIFVLSSNNFTSTF 294

Query: 283 --DVKLSQDLSQVLDI----------LSACGASALESLVFSSSQISGHLT-SQLGQFKSL 329
             D+ +  +L +  D+           S     +LES+    +Q +G +  +       L
Sbjct: 295 PFDMSIFHNL-EYFDVSYNSFSGPFPKSLLLIPSLESIYLQENQFTGPIEFANTSSSTKL 353

Query: 330 RTLSLDDNCISGPLPPALGDLSSLTRLDLSRNMLNGSIPLSLGKISHLEYLDLSNNKMNG 389
           + L L  N + GP+P ++  L +L  LD+S N   G+IP ++ K+ +L +LDLS N + G
Sbjct: 354 QDLILGRNRLHGPIPESISRLLNLEELDISHNNFTGAIPPTISKLVNLLHLDLSKNNLEG 413

Query: 390 TLSEIHFVNLTKLTWFSASGNSLILQVNPNWVPPFQLKTLLLMSCHLGPQFPSWLHSQKN 449
            +       L +L     S NS     N +      ++ L L S       P  +    +
Sbjct: 414 EVPAC----LWRLNTMVLSHNSFSSFENTSQEEAL-IEELDLNSNSFQGPIPYMICKLSS 468

Query: 450 LSVLDISNARISDTIP---RWFWNSIF-------------------------------QL 475
           L  LD+SN   S +IP   R F  SI                                QL
Sbjct: 469 LGFLDLSNNLFSGSIPSCIRNFSGSIKELNLGDNNFSGTLPDIFSKATELVSLDVSHNQL 528

Query: 476 SGIIPESFKNFSNLEVLNLGDNEFVGKIPTWMGEGFTSLLILILRSNKFDGFLPIQLCRL 535
            G  P+S  N   LE++N+  N+     P+W+ E   SL +L LRSNKF G L  +   +
Sbjct: 529 EGKFPKSLINCKALELVNVESNKIKDIFPSWL-ESLPSLHVLNLRSNKFYGPLYHRHASI 587

Query: 536 --TSLQILDVANNSLSGTMPGCV-NNFSAMATIDSSHQSNAMSYFEVTAYDCEVLEDASI 592
              SL+I+D+++N+ SGT+P    +N+  M T+          ++    Y      +  +
Sbjct: 588 GFQSLRIIDISHNNFSGTLPPYYFSNWKDMTTLTEEMDQYMTEFWR---YADSYYHEMEM 644

Query: 593 VMKGSMVEYNSILNLVRIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQIPENIGN 652
           V KG  + +  I    R ID S N  +G IP  L YL+ L+ LNLS N FT  IP  + N
Sbjct: 645 VNKGVDMSFERIRRDFRAIDFSGNKINGNIPESLGYLKELRVLNLSGNAFTSVIPRFLAN 704

Query: 653 LISIESLDFSTNQLSSKISQSMSSLSFLNHLNVSNNLLTGKIPSSTQLQSFDASCFVGNN 712
           L  +E+LD S N+LS +I Q +++LSFL+++N S+NLL G +P  TQ Q    S F+ N 
Sbjct: 705 LTKLETLDISRNKLSGQIPQDLAALSFLSYMNFSHNLLQGPVPRGTQFQRQKCSSFLDNP 764

Query: 713 LCGPPLPSCTENNARAPKD--PNGNAEQDEDEVDWLLYVSIAVGFVVGFWC 761
                   C +  A  P    P   +E +E+  +W   V+ A+ +  G  C
Sbjct: 765 GLYGLEDICRDTGALNPTSQLPEDLSEAEENMFNW---VAAAIAYGPGVLC 812

Involved in the perception of CLV3 and CLV3-like peptides, that act as extracellular signals regulating meristems maintenance.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9FL28|FLS2_ARATH LRR receptor-like serine/threonine-protein kinase FLS2 OS=Arabidopsis thaliana GN=FLS2 PE=1 SV=1

 Score =  233 bits (594), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 219/792 (27%), Positives = 362/792 (45%), Gaps = 128/792 (16%)

Query: 33  DSEREALLKLKQDL-KDPSNRLGSWVVDGDC--CKWAEVVCSNLTGHVLQLSLRNPFRND 89
           + E EAL   K  +  DP   L  W + G    C W  + C + TGHV+ +SL       
Sbjct: 28  EPEIEALKSFKNGISNDPLGVLSDWTIIGSLRHCNWTGITCDS-TGHVVSVSL------- 79

Query: 90  LRYATTEYEDYMRSMLSGNVNPSLVDLKHLTHLDLSGNDFQGIRIPKYLGS--------- 140
                      +   L G ++P++ +L +L  LDL+ N F G +IP  +G          
Sbjct: 80  -----------LEKQLEGVLSPAIANLTYLQVLDLTSNSFTG-KIPAEIGKLTELNQLIL 127

Query: 141 ---------------LKNLRYLNLSGAEFAGIIPHQLGNLSNLRCLDLSWS--------- 176
                          LKN+ YL+L     +G +P ++   S+L  +   ++         
Sbjct: 128 YLNYFSGSIPSGIWELKNIFYLDLRNNLLSGDVPEEICKTSSLVLIGFDYNNLTGKIPEC 187

Query: 177 -----EYALQVHSFSWLSGQIPNRLGNLTSLRHLDLSANKFNSTTAGWLSKFNHLEFLSL 231
                   + V + + L+G IP  +G L +L  LDLS N+             +L+ L L
Sbjct: 188 LGDLVHLQMFVAAGNHLTGSIPVSIGTLANLTDLDLSGNQLTGKIPRDFGNLLNLQSLVL 247

Query: 232 SSNGLQGTI-SSIG----------------------LENLTSIKTIDLSLNFELGGPIPT 268
           + N L+G I + IG                      L NL  ++ + +  N +L   IP+
Sbjct: 248 TENLLEGDIPAEIGNCSSLVQLELYDNQLTGKIPAELGNLVQLQALRIYKN-KLTSSIPS 306

Query: 269 SFVRLCELTSIDVSDVKLSQDLSQVLDILSACGASALES-------------------LV 309
           S  RL +LT + +S+  L   +S+ +  L +     L S                   L 
Sbjct: 307 SLFRLTQLTHLGLSENHLVGPISEEIGFLESLEVLTLHSNNFTGEFPQSITNLRNLTVLT 366

Query: 310 FSSSQISGHLTSQLGQFKSLRTLSLDDNCISGPLPPALGDLSSLTRLDLSRNMLNGSIPL 369
              + ISG L + LG   +LR LS  DN ++GP+P ++ + + L  LDLS N + G IP 
Sbjct: 367 VGFNNISGELPADLGLLTNLRNLSAHDNLLTGPIPSSISNCTGLKLLDLSHNQMTGEIPR 426

Query: 370 SLGKISHLEYLDLSNNKMNGTLSEIHFVNLTKLTWFSASGNSLILQVNPNWVPPFQLKTL 429
             G++ +L ++ +  N   G + +  F N + L   S + N+L   + P      +L+ L
Sbjct: 427 GFGRM-NLTFISIGRNHFTGEIPDDIF-NCSNLETLSVADNNLTGTLKPLIGKLQKLRIL 484

Query: 430 LLMSCHLGPQFPSWLHSQKNLSVLDISNARISDTIPRWFWN-SIFQ--------LSGIIP 480
            +    L    P  + + K+L++L + +   +  IPR   N ++ Q        L G IP
Sbjct: 485 QVSYNSLTGPIPREIGNLKDLNILYLHSNGFTGRIPREMSNLTLLQGLRMYSNDLEGPIP 544

Query: 481 ESFKNFSNLEVLNLGDNEFVGKIPTWMGEGFTSLLILILRSNKFDGFLPIQLCRLTSLQI 540
           E   +   L VL+L +N+F G+IP    +   SL  L L+ NKF+G +P  L  L+ L  
Sbjct: 545 EEMFDMKLLSVLDLSNNKFSGQIPALFSK-LESLTYLSLQGNKFNGSIPASLKSLSLLNT 603

Query: 541 LDVANNSLSGTMPG----CVNNFSAMATIDSSHQSNAMSYFEVTAYDCEVLEDASIVMKG 596
            D+++N L+GT+PG     + N        ++  +  +          + ++ ++ +  G
Sbjct: 604 FDISDNLLTGTIPGELLASLKNMQLYLNFSNNLLTGTIPKELGKLEMVQEIDLSNNLFSG 663

Query: 597 SMVEYNSILNLVRIIDVSKNNFSGEIPMELTYLRGLQ---SLNLSHNIFTGQIPENIGNL 653
           S+         V  +D S+NN SG IP E+   +G+    SLNLS N F+G+IP++ GN+
Sbjct: 664 SIPRSLQACKNVFTLDFSQNNLSGHIPDEV--FQGMDMIISLNLSRNSFSGEIPQSFGNM 721

Query: 654 ISIESLDFSTNQLSSKISQSMSSLSFLNHLNVSNNLLTGKIPSSTQLQSFDASCFVGN-N 712
             + SLD S+N L+ +I +S+++LS L HL +++N L G +P S   ++ +AS  +GN +
Sbjct: 722 THLVSLDLSSNNLTGEIPESLANLSTLKHLKLASNNLKGHVPESGVFKNINASDLMGNTD 781

Query: 713 LCG--PPLPSCT 722
           LCG   PL  CT
Sbjct: 782 LCGSKKPLKPCT 793

Constitutes the pattern-recognition receptor (PPR) that determines the specific perception of flagellin (flg22), a potent elicitor of the defense response to pathogen-associated molecular patterns (PAMPs). Flagellin-binding to the receptor is the first step to initiate the innate immune MAP kinase signaling cascade (MEKK1, MKK4/MKK5 and MPK3/MPK6), resulting in enhanced resistance against pathogens. Binding to the effector AvrPto1 from Pseudomonas syringae blocks the downstream plant immune response.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LVP0|Y5639_ARATH Probable leucine-rich repeat receptor-like protein kinase At5g63930 OS=Arabidopsis thaliana GN=At5g63930 PE=1 SV=1

 Score =  224 bits (571), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 223/740 (30%), Positives = 348/740 (47%), Gaps = 81/740 (10%)

Query: 35  EREALLKLKQDLKDPSNRLGSWVV-DGDCCKWAEVVCSNLTGHVLQLSLRNPFRNDLRYA 93
           E + LL++K    D    L +W   D   C W  V+CSN +     LSL           
Sbjct: 30  EGQYLLEIKSKFVDAKQNLRNWNSNDSVPCGWTGVMCSNYSSDPEVLSLN---------- 79

Query: 94  TTEYEDYMRSM-LSGNVNPSLVDLKHLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGA 152
                  + SM LSG ++PS+  L HL  LDLS N   G +IPK +G+  +L  L L+  
Sbjct: 80  -------LSSMVLSGKLSPSIGGLVHLKQLDLSYNGLSG-KIPKEIGNCSSLEILKLNNN 131

Query: 153 EFAGIIPHQLGNLSNLRCLDLSWSEYALQVHSFSWLSGQIPNRLGNLTSLRHLDLSANKF 212
           +F G IP ++G L +L  L +  +           +SG +P  +GNL SL  L   +N  
Sbjct: 132 QFDGEIPVEIGKLVSLENLIIYNNR----------ISGSLPVEIGNLLSLSQLVTYSNNI 181

Query: 213 NSTTAGWLSKFNHLEFLSLSSNGLQGTI-SSIGLENLTSIKTIDLSLNFELGGPIPTSFV 271
           +      +     L       N + G++ S IG     S+  + L+ N +L G +P    
Sbjct: 182 SGQLPRSIGNLKRLTSFRAGQNMISGSLPSEIG--GCESLVMLGLAQN-QLSGELPKEIG 238

Query: 272 RLCELTSIDVSDVKLSQDLSQVLDILSACGASALESLVFSSSQISGHLTSQLGQFKSLRT 331
            L +L+ + + + + S  + + +   S C  ++LE+L    +Q+ G +  +LG  +SL  
Sbjct: 239 MLKKLSQVILWENEFSGFIPREI---SNC--TSLETLALYKNQLVGPIPKELGDLQSLEF 293

Query: 332 LSLDDNCISGPLPPALGDLSSLTRLDLSRNMLNGSIPLSLGKISHLEYLDLSNNKMNGTL 391
           L L  N ++G +P  +G+LS    +D S N L G IPL LG I  LE L L  N++ GT+
Sbjct: 294 LYLYRNGLNGTIPREIGNLSYAIEIDFSENALTGEIPLELGNIEGLELLYLFENQLTGTI 353

Query: 392 SEIHFVNLTKLTWFSASGNSL---------------ILQVNPN----WVPPF-----QLK 427
             +    L  L+    S N+L               +LQ+  N     +PP       L 
Sbjct: 354 P-VELSTLKNLSKLDLSINALTGPIPLGFQYLRGLFMLQLFQNSLSGTIPPKLGWYSDLW 412

Query: 428 TLLLMSCHLGPQFPSWLHSQKNLSVLDISNARISDTIPRWFW--NSIFQLS-------GI 478
            L +   HL  + PS+L    N+ +L++    +S  IP       ++ QL        G 
Sbjct: 413 VLDMSDNHLSGRIPSYLCLHSNMIILNLGTNNLSGNIPTGITTCKTLVQLRLARNNLVGR 472

Query: 479 IPESFKNFSNLEVLNLGDNEFVGKIPTWMGEGFTSLLILILRSNKFDGFLPIQLCRLTSL 538
            P +     N+  + LG N F G IP  +G   ++L  L L  N F G LP ++  L+ L
Sbjct: 473 FPSNLCKQVNVTAIELGQNRFRGSIPREVGN-CSALQRLQLADNGFTGELPREIGMLSQL 531

Query: 539 QILDVANNSLSGTMPGCVNNFSAMATID--SSHQSNAMSYFEVTAYDCEVLEDASIVMKG 596
             L++++N L+G +P  + N   +  +D   ++ S  +     + Y  E+L+ ++  + G
Sbjct: 532 GTLNISSNKLTGEVPSEIFNCKMLQRLDMCCNNFSGTLPSEVGSLYQLELLKLSNNNLSG 591

Query: 597 SMVEYNSILNLVRIIDVSKNNFSGEIPMELTYLRGLQ-SLNLSHNIFTGQIPENIGNLIS 655
           ++      L+ +  + +  N F+G IP EL  L GLQ +LNLS+N  TG+IP  + NL+ 
Sbjct: 592 TIPVALGNLSRLTELQMGGNLFNGSIPRELGSLTGLQIALNLSYNKLTGEIPPELSNLVM 651

Query: 656 IESLDFSTNQLSSKISQSMSSLSFLNHLNVSNNLLTGKIPSSTQLQSFDASCFVGNN-LC 714
           +E L  + N LS +I  S ++LS L   N S N LTG IP    L++   S F+GN  LC
Sbjct: 652 LEFLLLNNNNLSGEIPSSFANLSSLLGYNFSYNSLTGPIP---LLRNISMSSFIGNEGLC 708

Query: 715 GPPLPSCTENNARAPKDPNG 734
           GPPL  C +    AP    G
Sbjct: 709 GPPLNQCIQTQPFAPSQSTG 728

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FZ59|PEPR2_ARATH Leucine-rich repeat receptor-like protein kinase PEPR2 OS=Arabidopsis thaliana GN=PEPR2 PE=1 SV=1

 Score =  219 bits (557), Expect = 9e-56,   Method: Compositional matrix adjust.
 Identities = 207/669 (30%), Positives = 331/669 (49%), Gaps = 74/669 (11%)

Query: 89  DLRYATTEYEDYMRSMLSGNVNPSLVDLKHLTHLDLSGNDFQGIRIPKYLGSLKNLRYLN 148
           DL     E  +   S LSG +   + +LK L  LDLS N F G+ +P  LG+  +L YL+
Sbjct: 72  DLSGNVVETLNLSASGLSGQLGSEIGELKSLVTLDLSLNSFSGL-LPSTLGNCTSLEYLD 130

Query: 149 LSGAEFAGIIPHQLGNLSNLRCLDLSWS--------------EYALQVHSFSWLSGQIPN 194
           LS  +F+G +P   G+L NL  L L  +              E      S++ LSG IP 
Sbjct: 131 LSNNDFSGEVPDIFGSLQNLTFLYLDRNNLSGLIPASVGGLIELVDLRMSYNNLSGTIPE 190

Query: 195 RLGNLTSLRHLDLSANKFNSTTAGWLSKFNHLEFLSLSSNGLQGTISSIGLENLTSIKTI 254
            LGN + L +L L+ NK N +    L    +L  L +S+N L G +   G  N   + ++
Sbjct: 191 LLGNCSKLEYLALNNNKLNGSLPASLYLLENLGELFVSNNSLGGRLH-FGSSNCKKLVSL 249

Query: 255 DLSLN-FELG----------------------GPIPTSFVRLCELTSIDVSDVKLSQDLS 291
           DLS N F+ G                      G IP+S   L +++ ID+SD +LS ++ 
Sbjct: 250 DLSFNDFQGGVPPEIGNCSSLHSLVMVKCNLTGTIPSSMGMLRKVSVIDLSDNRLSGNIP 309

Query: 292 QVLDILSACGASALESLVFSSSQISGHLTSQLGQFKSLRTLSLDDNCISGPLPPALGDLS 351
           Q L        S+LE+L  + +Q+ G +   L + K L++L L  N +SG +P  +  + 
Sbjct: 310 QELG-----NCSSLETLKLNDNQLQGEIPPALSKLKKLQSLELFFNKLSGEIPIGIWKIQ 364

Query: 352 SLTRLDLSRNMLNGSIPLSLGKISHLEYLDLSNNKMNGTLSEIHFVNLTKLTWFSASGNS 411
           SLT++ +  N L G +P+ + ++ HL+ L L NN   G +     +N + L      GN 
Sbjct: 365 SLTQMLVYNNTLTGELPVEVTQLKHLKKLTLFNNGFYGDIPMSLGLNRS-LEEVDLLGNR 423

Query: 412 LILQVNPNWVPPFQLKTLLLMSCHLGPQFPSWLHSQKNLSVLDISNARISDTIPRWFWNS 471
              ++ P+     +L+  +L S  L  + P+ +   K L        R+ D         
Sbjct: 424 FTGEIPPHLCHGQKLRLFILGSNQLHGKIPASIRQCKTLE-----RVRLEDN-------- 470

Query: 472 IFQLSGIIPESFKNFSNLEVLNLGDNEFVGKIPTWMGEGFTSLLILILRSNKFDGFLPIQ 531
             +LSG++PE F    +L  +NLG N F G IP  +G    +LL + L  NK  G +P +
Sbjct: 471 --KLSGVLPE-FPESLSLSYVNLGSNSFEGSIPRSLGS-CKNLLTIDLSQNKLTGLIPPE 526

Query: 532 LCRLTSLQILDVANNSLSGTMP----GCVNNFSAMATIDSSHQSNAMSYFEVTAYDCEVL 587
           L  L SL +L++++N L G +P    GC          +S + S   S+    +    VL
Sbjct: 527 LGNLQSLGLLNLSHNYLEGPLPSQLSGCARLLYFDVGSNSLNGSIPSSFRSWKSLSTLVL 586

Query: 588 EDASIVMKGSMVEYNSILNLVRIIDVSKNNFSGEIPMELTYLRGLQ-SLNLSHNIFTGQI 646
            D + +  G++ ++ + L+ +  + +++N F G+IP  +  L+ L+  L+LS N+FTG+I
Sbjct: 587 SDNNFL--GAIPQFLAELDRLSDLRIARNAFGGKIPSSVGLLKSLRYGLDLSANVFTGEI 644

Query: 647 PENIGNLISIESLDFSTNQLSSKISQSMSSLSFLNHLNVSNNLLTGKIPSSTQLQSFDAS 706
           P  +G LI++E L+ S N+L+  +S  + SL  LN ++VS N  TG IP    L S ++S
Sbjct: 645 PTTLGALINLERLNISNNKLTGPLS-VLQSLKSLNQVDVSYNQFTGPIP--VNLLS-NSS 700

Query: 707 CFVGN-NLC 714
            F GN +LC
Sbjct: 701 KFSGNPDLC 709

Acts as a receptor for PEP defense peptides. Unlike typical immune receptors, senses an endogenous elicitor that potentiates PAMP-inducible plant responses.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FIZ3|GSO2_ARATH LRR receptor-like serine/threonine-protein kinase GSO2 OS=Arabidopsis thaliana GN=GSO2 PE=2 SV=2

 Score =  214 bits (546), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 199/675 (29%), Positives = 310/675 (45%), Gaps = 89/675 (13%)

Query: 105 LSGNVNPSLVDLKHLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGN 164
           L+G++   L  LK+L  L+L  N F G  IP  LG L +++YLNL G +  G+IP +L  
Sbjct: 228 LNGSLPAELNRLKNLQTLNLGDNSFSG-EIPSQLGDLVSIQYLNLIGNQLQGLIPKRLTE 286

Query: 165 LSNLRCLDLSWSEYALQVHSFSW------------------------------------- 187
           L+NL+ LDLS +     +H   W                                     
Sbjct: 287 LANLQTLDLSSNNLTGVIHEEFWRMNQLEFLVLAKNRLSGSLPKTICSNNTSLKQLFLSE 346

Query: 188 --LSGQIPNRLGNLTSLRHLDLSANKFNSTTAGWLSKFNHLEFLSLSSNGLQGTISSIGL 245
             LSG+IP  + N  SL+ LDLS N         L +   L  L L++N L+GT+SS  +
Sbjct: 347 TQLSGEIPAEISNCQSLKLLDLSNNTLTGQIPDSLFQLVELTNLYLNNNSLEGTLSS-SI 405

Query: 246 ENLTSIKTIDLSLNFELGGPIPTSFVRLCELTSIDVSDVKLSQDLSQVLDILSACGASAL 305
            NLT+++   L  N  L G +P     L +L  + + + + S ++      +     + L
Sbjct: 406 SNLTNLQEFTLYHN-NLEGKVPKEIGFLGKLEIMYLYENRFSGEMP-----VEIGNCTRL 459

Query: 306 ESLVFSSSQISGHLTSQLGQFKSLRTLSLDDNCISGPLPPALGDLSSLTRLDLSRNMLNG 365
           + + +  +++SG + S +G+ K L  L L +N + G +P +LG+   +T +DL+ N L+G
Sbjct: 460 QEIDWYGNRLSGEIPSSIGRLKDLTRLHLRENELVGNIPASLGNCHQMTVIDLADNQLSG 519

Query: 366 SIPLSLGKISHLEYLDLSNNKMNGTLSEIHFVNLTKLTWFSASGNSLILQVNPNWVPPFQ 425
           SIP S G ++ LE   + NN + G L +   +NL  LT  + S N     ++P       
Sbjct: 520 SIPSSFGFLTALELFMIYNNSLQGNLPD-SLINLKNLTRINFSSNKFNGSISPLCGSSSY 578

Query: 426 LKTLLLMSCHLGPQFPSWLHSQKNLSVLDISNARISDTIPRWFWN---------SIFQLS 476
           L   +  +   G   P  L    NL  L +   + +  IPR F           S   LS
Sbjct: 579 LSFDVTENGFEG-DIPLELGKSTNLDRLRLGKNQFTGRIPRTFGKISELSLLDISRNSLS 637

Query: 477 GIIPESFKNFSNLEVLNLGDNEFVGKIPTWMGEGFTSLLILILRSNKFDGFLPIQLCRLT 536
           GIIP        L  ++L +N   G IPTW+G+    L  L L SNKF G LP ++  LT
Sbjct: 638 GIIPVELGLCKKLTHIDLNNNYLSGVIPTWLGK-LPLLGELKLSSNKFVGSLPTEIFSLT 696

Query: 537 SLQILDVANNSLSGTMPGCVNNFSAMATIDSSHQSNAMSYFEVTAYDCEVLED--ASIVM 594
           ++  L +  NSL+G++P  + N  A+  ++      +           ++ E   +   +
Sbjct: 697 NILTLFLDGNSLNGSIPQEIGNLQALNALNLEENQLSGPLPSTIGKLSKLFELRLSRNAL 756

Query: 595 KGSM-VEYNSILNLVRIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQIPENIGNL 653
            G + VE   + +L   +D+S NNF+G IP  ++ L  L+SL+LSHN   G++P  IG++
Sbjct: 757 TGEIPVEIGQLQDLQSALDLSYNNFTGRIPSTISTLPKLESLDLSHNQLVGEVPGQIGDM 816

Query: 654 ISIESLDFSTNQLSSKISQSMSSLSFLNHLNVSNNLLTGKIPSSTQLQSFDASCFVGN-N 712
            S                        L +LN+S N L GK+    Q   + A  FVGN  
Sbjct: 817 KS------------------------LGYLNLSYNNLEGKL--KKQFSRWQADAFVGNAG 850

Query: 713 LCGPPLPSCTENNAR 727
           LCG PL  C    ++
Sbjct: 851 LCGSPLSHCNRAGSK 865

Together with GSO1, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons. Involved in the nuclear division phase of megagametogenesis.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LP24|Y1571_ARATH Probable leucine-rich repeat receptor-like protein kinase At1g35710 OS=Arabidopsis thaliana GN=At1g35710 PE=2 SV=1

 Score =  214 bits (544), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 229/803 (28%), Positives = 360/803 (44%), Gaps = 115/803 (14%)

Query: 31  CTDSEREALLKLKQDLKDPSNRLGSWVVDGD------CCKWAEVVCSNLTGHVLQLSLRN 84
            T +E  ALLK K    + S++L SWV D +      C  W  V C N  G + +L+L N
Sbjct: 29  ATIAEANALLKWKSTFTN-SSKLSSWVHDANTNTSFSCTSWYGVSC-NSRGSIEELNLTN 86

Query: 85  ----------PFRNDLRYATTEYEDYMRSMLSGNVNPSLVDLKHLTHLDLSGNDFQGIRI 134
                     PF   +  +   Y D   ++LSG + P   +L  L + DLS N   G  I
Sbjct: 87  TGIEGTFQDFPF---ISLSNLAYVDLSMNLLSGTIPPQFGNLSKLIYFDLSTNHLTG-EI 142

Query: 135 PKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRCLDLSWSEYALQVHSF--------- 185
              LG+LKNL  L L       +IP +LGN+ ++  L LS ++    + S          
Sbjct: 143 SPSLGNLKNLTVLYLHQNYLTSVIPSELGNMESMTDLALSQNKLTGSIPSSLGNLKNLMV 202

Query: 186 -----SWLSGQIPNRLGNLTSLRHLDLSANKFNSTTAGWLSKFNHLEFLSLSSNGLQGTI 240
                ++L+G IP  LGN+ S+  L LS NK   +    L    +L  L L  N L G I
Sbjct: 203 LYLYENYLTGVIPPELGNMESMTDLALSQNKLTGSIPSTLGNLKNLMVLYLYENYLTGVI 262

Query: 241 S-SIGLENLTSIKTIDLSLNFELGGPIPTSFVRLCELTSIDVSDVKLSQDLSQVLDILSA 299
              IG  N+ S+  + LS N +L G IP+S   L  LT + +    L+  +   L     
Sbjct: 263 PPEIG--NMESMTNLALSQN-KLTGSIPSSLGNLKNLTLLSLFQNYLTGGIPPKLG---- 315

Query: 300 CGASALESLVFSSSQISGHLTSQLGQFKSLRTLSLDDNCISGPLPPALGDLSSLTRLDLS 359
               ++  L  S+++++G + S LG  K+L  L L +N ++G +PP LG++ S+  L L+
Sbjct: 316 -NIESMIDLELSNNKLTGSIPSSLGNLKNLTILYLYENYLTGVIPPELGNMESMIDLQLN 374

Query: 360 RNMLNGSIPLS------------------------LGKISHLEYLDLSNNKMNGTLSEIH 395
            N L GSIP S                        LG +  +  LDLS NK+ G++ +  
Sbjct: 375 NNKLTGSIPSSFGNLKNLTYLYLYLNYLTGVIPQELGNMESMINLDLSQNKLTGSVPD-S 433

Query: 396 FVNLTKLTWFSASGNSLILQVNPNWVPPFQLKTLLLMSCHLGPQFPSWLHSQKNLSVLDI 455
           F N TKL       N L   + P       L TL+L + +    FP  +   + L  + +
Sbjct: 434 FGNFTKLESLYLRVNHLSGAIPPGVANSSHLTTLILDTNNFTGFFPETVCKGRKLQNISL 493

Query: 456 SNARISDTIP------------RWFWNSIFQLSGIIPESFKNFSNLEVLNLGDNEFVGKI 503
               +   IP            R+  N   + +G I E+F  + +L  ++   N+F G+I
Sbjct: 494 DYNHLEGPIPKSLRDCKSLIRARFLGN---KFTGDIFEAFGIYPDLNFIDFSHNKFHGEI 550

Query: 504 PT-WMGEGFTSLLILILRSNKFDGFLPIQLCRLTSLQILDVANNSLSGTMPGCVNNFSAM 562
            + W  E    L  LI+ +N   G +P ++  +T L  LD++ N+L G +P  + N + +
Sbjct: 551 SSNW--EKSPKLGALIMSNNNITGAIPTEIWNMTQLVELDLSTNNLFGELPEAIGNLTNL 608

Query: 563 ATID------SSHQSNAMSYFEVTAYDCEVLEDASIVMKGSMVE-YNSILNLVRIIDVSK 615
           + +       S      +S+      + E L+ +S      + + ++S L L   +++S+
Sbjct: 609 SRLRLNGNQLSGRVPAGLSFLT----NLESLDLSSNNFSSEIPQTFDSFLKL-HDMNLSR 663

Query: 616 NNFSGEIPMELTYLRGLQSLNLSHNIFTGQIPENIGNLISIESLDFSTNQLSSKISQSMS 675
           N F G IP  L+ L  L  L+LSHN   G+IP  + +L S++ LD S N LS  I  +  
Sbjct: 664 NKFDGSIP-RLSKLTQLTQLDLSHNQLDGEIPSQLSSLQSLDKLDLSHNNLSGLIPTTFE 722

Query: 676 SLSFLNHLNVSNNLLTGKIPSSTQLQSFDASCFVGN-----NLCGPPLPSCTENNARAPK 730
            +  L ++++SNN L G +P +   +   A     N     N+    L  C E   + PK
Sbjct: 723 GMIALTNVDISNNKLEGPLPDTPTFRKATADALEENIGLCSNIPKQRLKPCRE--LKKPK 780

Query: 731 DPNGNAEQDEDEVDWLLYVSIAV 753
             NGN       V W+L   + V
Sbjct: 781 K-NGNL------VVWILVPILGV 796

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|O49318|Y2317_ARATH Probable leucine-rich repeat receptor-like protein kinase At2g33170 OS=Arabidopsis thaliana GN=At2g33170 PE=2 SV=1

 Score =  212 bits (539), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 219/768 (28%), Positives = 345/768 (44%), Gaps = 79/768 (10%)

Query: 2   KSTMSVSVALVFLELFAISSFCSGNSDVGCTDSEREALLKLK-QDLKDPSNRLGSW-VVD 59
           K + S+ V ++FL    + +  S NSD        + LL+LK +  +D  NRL +W  +D
Sbjct: 10  KESKSMFVGVLFLLTLLVWTSESLNSD-------GQFLLELKNRGFQDSLNRLHNWNGID 62

Query: 60  GDCCKWAEVVCSNLTGHVLQLSLRNPFRNDLRYATTEYEDYMRSMLSGNVNPSLVDLKHL 119
              C W  V CS+        SL                D     LSG V+PS+  L +L
Sbjct: 63  ETPCNWIGVNCSSQGSSSSSNSL-----------VVTSLDLSSMNLSGIVSPSIGGLVNL 111

Query: 120 THLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRCLDLSWSEYA 179
            +L+L+ N   G  IP+ +G+   L  + L+  +F G IP ++  LS LR  ++  ++  
Sbjct: 112 VYLNLAYNALTG-DIPREIGNCSKLEVMFLNNNQFGGSIPVEINKLSQLRSFNICNNK-- 168

Query: 180 LQVHSFSWLSGQIPNRLGNLTSLRHLDLSANKFNSTTAGWLSKFNHLEFLSLSSNGLQGT 239
                   LSG +P  +G+L +L  L    N         L   N L       N   G 
Sbjct: 169 --------LSGPLPEEIGDLYNLEELVAYTNNLTGPLPRSLGNLNKLTTFRAGQNDFSGN 220

Query: 240 I-SSIGLENLTSIKTIDLSLNFELGGPIPTSFVRLCELTSIDVSDVKLSQDLSQVLDILS 298
           I + IG     ++K + L+ NF + G +P     L +L  + +   K S  + + +  L+
Sbjct: 221 IPTEIG--KCLNLKLLGLAQNF-ISGELPKEIGMLVKLQEVILWQNKFSGFIPKDIGNLT 277

Query: 299 ACGASALESLVFSSSQISGHLTSQLGQFKSLRTLSLDDNCISGPLPPALGDLSSLTRLDL 358
           +     LE+L    + + G + S++G  KSL+ L L  N ++G +P  LG LS +  +D 
Sbjct: 278 S-----LETLALYGNSLVGPIPSEIGNMKSLKKLYLYQNQLNGTIPKELGKLSKVMEIDF 332

Query: 359 SRNMLNGSIPLSLGKISHLEYLDLSNNKMNGTLSEIHFVNLTKLTWFSASGNSLILQVNP 418
           S N+L+G IP+ L KIS L  L L  NK+ G +       L  L     S NSL   + P
Sbjct: 333 SENLLSGEIPVELSKISELRLLYLFQNKLTGIIPN-ELSKLRNLAKLDLSINSLTGPIPP 391

Query: 419 NWVPPFQLKTLLLMSCHLGPQFPSWLHSQKNLSVLDISNARISDTIPRWFW--------- 469
            +     ++ L L    L    P  L     L V+D S  ++S  IP +           
Sbjct: 392 GFQNLTSMRQLQLFHNSLSGVIPQGLGLYSPLWVVDFSENQLSGKIPPFICQQSNLILLN 451

Query: 470 ---NSIF---------------------QLSGIIPESFKNFSNLEVLNLGDNEFVGKIPT 505
              N IF                     +L+G  P       NL  + L  N F G +P 
Sbjct: 452 LGSNRIFGNIPPGVLRCKSLLQLRVVGNRLTGQFPTELCKLVNLSAIELDQNRFSGPLPP 511

Query: 506 WMGEGFTSLLILILRSNKFDGFLPIQLCRLTSLQILDVANNSLSGTMPGCVNNFSAMATI 565
            +G     L  L L +N+F   LP ++ +L++L   +V++NSL+G +P  + N   +  +
Sbjct: 512 EIGT-CQKLQRLHLAANQFSSNLPNEISKLSNLVTFNVSSNSLTGPIPSEIANCKMLQRL 570

Query: 566 DSSHQS--NAMSYFEVTAYDCEVLEDASIVMKGSMVEYNSILNLVRIIDVSKNNFSGEIP 623
           D S  S   ++     + +  E+L  +     G++      L  +  + +  N FSG IP
Sbjct: 571 DLSRNSFIGSLPPELGSLHQLEILRLSENRFSGNIPFTIGNLTHLTELQMGGNLFSGSIP 630

Query: 624 MELTYLRGLQ-SLNLSHNIFTGQIPENIGNLISIESLDFSTNQLSSKISQSMSSLSFLNH 682
            +L  L  LQ ++NLS+N F+G+IP  IGNL  +  L  + N LS +I  +  +LS L  
Sbjct: 631 PQLGLLSSLQIAMNLSYNDFSGEIPPEIGNLHLLMYLSLNNNHLSGEIPTTFENLSSLLG 690

Query: 683 LNVSNNLLTGKIPSSTQLQSFDASCFVGNN-LCGPPLPSCTENNARAP 729
            N S N LTG++P +   Q+   + F+GN  LCG  L SC  +++  P
Sbjct: 691 CNFSYNNLTGQLPHTQIFQNMTLTSFLGNKGLCGGHLRSCDPSHSSWP 738

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9ZPS9|BRL2_ARATH Serine/threonine-protein kinase BRI1-like 2 OS=Arabidopsis thaliana GN=BRL2 PE=1 SV=1

 Score =  208 bits (530), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 196/668 (29%), Positives = 302/668 (45%), Gaps = 94/668 (14%)

Query: 117 KHLTHLDLSGNDF----QGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRCLD 172
           K L  LDLS N+      G+ IP  L S  ++ YL+ SG   +G I   L N +NL+ L+
Sbjct: 177 KKLQTLDLSYNNITGPISGLTIP--LSSCVSMTYLDFSGNSISGYISDSLINCTNLKSLN 234

Query: 173 LSWSEYALQVHSFSWLSGQIPNRLGNLTSLRHLDLSANKFNSTTAGWL-----SKFNHLE 227
           LS++ +           GQIP   G L  L+ LDLS N+      GW+          L+
Sbjct: 235 LSYNNF----------DGQIPKSFGELKLLQSLDLSHNRL----TGWIPPEIGDTCRSLQ 280

Query: 228 FLSLSSNGLQGTISSIGLENLTSIKTIDLSLNFELGGPIPTSFVRLCELTSIDVSDVKLS 287
            L LS N   G I    L + + ++++DLS N  + GP P + +R               
Sbjct: 281 NLRLSYNNFTGVIPE-SLSSCSWLQSLDLS-NNNISGPFPNTILR--------------- 323

Query: 288 QDLSQVLDILSACGASALESLVFSSSQISGHLTSQLGQFKSLRTLSLDDNCISGPLPPAL 347
                           +L+ L+ S++ ISG   + +   KSLR      N  SG +PP L
Sbjct: 324 -------------SFGSLQILLLSNNLISGDFPTSISACKSLRIADFSSNRFSGVIPPDL 370

Query: 348 -GDLSSLTRLDLSRNMLNGSIPLSLGKISHLEYLDLSNNKMNGTLSEIHFVNLTKLTWFS 406
               +SL  L L  N++ G IP ++ + S L  +DLS N +NGT+      NL KL  F 
Sbjct: 371 CPGAASLEELRLPDNLVTGEIPPAISQCSELRTIDLSLNYLNGTIPP-EIGNLQKLEQFI 429

Query: 407 ASGNSLILQVNPNWVPPFQLKTLLLMSCHLGPQFPSWLHSQKNLSVLDISNARISDTIPR 466
           A  N++  ++ P       LK L+L +  L  + P    +  N+  +  ++ R       
Sbjct: 430 AWYNNIAGEIPPEIGKLQNLKDLILNNNQLTGEIPPEFFNCSNIEWVSFTSNR------- 482

Query: 467 WFWNSIFQLSGIIPESFKNFSNLEVLNLGDNEFVGKIPTWMGEGFTSLLILILRSNKFDG 526
                   L+G +P+ F   S L VL LG+N F G+IP  +G+  T+L+ L L +N   G
Sbjct: 483 --------LTGEVPKDFGILSRLAVLQLGNNNFTGEIPPELGK-CTTLVWLDLNTNHLTG 533

Query: 527 FLPIQLCRLTSLQILDVANNSLSGTMPGCVNNFSAMATIDSSHQSNAMSYFEVTAYDCEV 586
            +P +L R          + +LSG + G  N  + +  + +S +       E +    E 
Sbjct: 534 EIPPRLGR-------QPGSKALSGLLSG--NTMAFVRNVGNSCKG-VGGLVEFSGIRPER 583

Query: 587 LE--------DASIVMKGSMVEYNSILNLVRIIDVSKNNFSGEIPMELTYLRGLQSLNLS 638
           L         D + +  G ++   +    +  +D+S N   G+IP E+  +  LQ L LS
Sbjct: 584 LLQIPSLKSCDFTRMYSGPILSLFTRYQTIEYLDLSYNQLRGKIPDEIGEMIALQVLELS 643

Query: 639 HNIFTGQIPENIGNLISIESLDFSTNQLSSKISQSMSSLSFLNHLNVSNNLLTGKIPSST 698
           HN  +G+IP  IG L ++   D S N+L  +I +S S+LSFL  +++SNN LTG IP   
Sbjct: 644 HNQLSGEIPFTIGQLKNLGVFDASDNRLQGQIPESFSNLSFLVQIDLSNNELTGPIPQRG 703

Query: 699 QLQSFDASCFVGN-NLCGPPLPSCTENNARAPK--DPNGNAEQDEDEVDWLLYVSIAVGF 755
           QL +  A+ +  N  LCG PLP C   N + P   +    A+       W   + + V  
Sbjct: 704 QLSTLPATQYANNPGLCGVPLPECKNGNNQLPAGTEEGKRAKHGTRAASWANSIVLGVLI 763

Query: 756 VVGFWCFI 763
                C +
Sbjct: 764 SAASVCIL 771

Receptor with a serine/threonine-protein kinase activity, which may transduce extracellular spatial and temporal signals into downstream cell differentiation responses in provascular and procambial cells. In contrast to BRI1, BRL1 and BRL3, it does not bind brassinolide.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q8VZG8|Y4885_ARATH Probable LRR receptor-like serine/threonine-protein kinase At4g08850 OS=Arabidopsis thaliana GN=At4g08850 PE=1 SV=3

 Score =  208 bits (530), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 208/710 (29%), Positives = 337/710 (47%), Gaps = 66/710 (9%)

Query: 16  LFAISSFCSGNSDVGCTDSEREALLKLKQDL--KDPSNRLGSWV---VDGDCCKWAEVVC 70
           L  IS   S +  V  T  E  ALLK K     +  S++L SWV       C  W  V C
Sbjct: 31  LLIISIVLSCSFAVSATVEEANALLKWKSTFTNQTSSSKLSSWVNPNTSSFCTSWYGVAC 90

Query: 71  SNLTGHVLQLSLRNPFRNDLRYATTEYEDYMRSMLSGNVNPSLVDLKHLTHLDLSGNDFQ 130
           S   G +++L+L N            +ED+  S            L +LT +DLS N F 
Sbjct: 91  S--LGSIIRLNLTN------TGIEGTFEDFPFS-----------SLPNLTFVDLSMNRFS 131

Query: 131 GIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRCLDLSWSEYALQVHSFSWLSG 190
           G   P + G    L Y +LS  +  G IP +LG+LSNL  L L  ++          L+G
Sbjct: 132 GTISPLW-GRFSKLEYFDLSINQLVGEIPPELGDLSNLDTLHLVENK----------LNG 180

Query: 191 QIPNRLGNLTSLRHLDLSANKFNSTTAGWLSKFNHLEFLSLSSNGLQGTI-SSIGLENLT 249
            IP+ +G LT +  + +  N               L  L L  N L G+I S IG  NL 
Sbjct: 181 SIPSEIGRLTKVTEIAIYDNLLTGPIPSSFGNLTKLVNLYLFINSLSGSIPSEIG--NLP 238

Query: 250 SIKTIDLSLNFELGGPIPTSFVRLCELTSIDVSDVKLSQDLSQVLDILSACGASALESLV 309
           +++ + L  N  L G IP+SF  L  +T +++ + +LS ++   +        +AL++L 
Sbjct: 239 NLRELCLDRN-NLTGKIPSSFGNLKNVTLLNMFENQLSGEIPPEIG-----NMTALDTLS 292

Query: 310 FSSSQISGHLTSQLGQFKSLRTLSLDDNCISGPLPPALGDLSSLTRLDLSRNMLNGSIPL 369
             +++++G + S LG  K+L  L L  N ++G +PP LG++ S+  L++S N L G +P 
Sbjct: 293 LHTNKLTGPIPSTLGNIKTLAVLHLYLNQLNGSIPPELGEMESMIDLEISENKLTGPVPD 352

Query: 370 SLGKISHLEYLDLSNNKMNGTLSEIHFVNLTKLTWFSASGNSLILQVNPNWVPPFQLKTL 429
           S GK++ LE+L L +N+++G +      N T+LT      N+    +        +L+ L
Sbjct: 353 SFGKLTALEWLFLRDNQLSGPIPP-GIANSTELTVLQLDTNNFTGFLPDTICRGGKLENL 411

Query: 430 LLMSCHLGPQFPSWLHSQKNLSVLDISNARISDTIPRWFWNSIFQLSGIIPESFKNFSNL 489
            L   H     P  L   K+L        R+     R+  NS    SG I E+F  +  L
Sbjct: 412 TLDDNHFEGPVPKSLRDCKSL-------IRV-----RFKGNS---FSGDISEAFGVYPTL 456

Query: 490 EVLNLGDNEFVGKI-PTWMGEGFTSLLILILRSNKFDGFLPIQLCRLTSLQILDVANNSL 548
             ++L +N F G++   W  E    L+  IL +N   G +P ++  +T L  LD+++N +
Sbjct: 457 NFIDLSNNNFHGQLSANW--EQSQKLVAFILSNNSITGAIPPEIWNMTQLSQLDLSSNRI 514

Query: 549 SGTMPGCVNNFSAMAT--IDSSHQSNAMSYFEVTAYDCEVLEDASIVMKGSMVEYNSILN 606
           +G +P  ++N + ++   ++ +  S  +        + E L+ +S      +    + L 
Sbjct: 515 TGELPESISNINRISKLQLNGNRLSGKIPSGIRLLTNLEYLDLSSNRFSSEIPPTLNNLP 574

Query: 607 LVRIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQIPENIGNLISIESLDFSTNQL 666
            +  +++S+N+    IP  LT L  LQ L+LS+N   G+I     +L ++E LD S N L
Sbjct: 575 RLYYMNLSRNDLDQTIPEGLTKLSQLQMLDLSYNQLDGEISSQFRSLQNLERLDLSHNNL 634

Query: 667 SSKISQSMSSLSFLNHLNVSNNLLTGKIPSSTQLQSFDASCFVGN-NLCG 715
           S +I  S   +  L H++VS+N L G IP +   ++     F GN +LCG
Sbjct: 635 SGQIPPSFKDMLALTHVDVSHNNLQGPIPDNAAFRNAPPDAFEGNKDLCG 684

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGQ5|GSO1_ARATH LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana GN=GSO1 PE=2 SV=1

 Score =  207 bits (527), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 220/770 (28%), Positives = 350/770 (45%), Gaps = 99/770 (12%)

Query: 24  SGNSDVGCTDSEREALLKLKQDL---KDPSNRLGSWVVDG-DCCKWAEVVCSN------- 72
           SG    G  +++ + LL++K+ L       + L  W  D  + C W  V C N       
Sbjct: 15  SGLGQPGIINNDLQTLLEVKKSLVTNPQEDDPLRQWNSDNINYCSWTGVTCDNTGLFRVI 74

Query: 73  ---LTGHVLQLSLRNPFRNDLRYATTEYEDYMRSMLSGNVNPSLVDLKHLTHLDLSGNDF 129
              LTG  L  S+   F    R+    + D   + L G +  +L +L  L  L L  N  
Sbjct: 75  ALNLTGLGLTGSISPWFG---RFDNLIHLDLSSNNLVGPIPTALSNLTSLESLFLFSNQL 131

Query: 130 QGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRCLDLSWSEYA---------- 179
            G  IP  LGSL N+R L +   E  G IP  LGNL NL+ L L+               
Sbjct: 132 TG-EIPSQLGSLVNIRSLRIGDNELVGDIPETLGNLVNLQMLALASCRLTGPIPSQLGRL 190

Query: 180 LQVHSF----SWLSGQIPNRLGNLTSLRHLDLSANKFNSTTAGWLSKFNHLEFLSLSSNG 235
           ++V S     ++L G IP  LGN + L     + N  N T    L +  +LE L+L++N 
Sbjct: 191 VRVQSLILQDNYLEGPIPAELGNCSDLTVFTAAENMLNGTIPAELGRLENLEILNLANNS 250

Query: 236 LQGTISSIGLENLTSIKTIDLSLNFELGGPIPTSFVRLCELTSIDVSDVKLSQD------ 289
           L G I S  L  ++ ++ + L  N +L G IP S   L  L ++D+S   L+ +      
Sbjct: 251 LTGEIPS-QLGEMSQLQYLSLMAN-QLQGLIPKSLADLGNLQTLDLSANNLTGEIPEEFW 308

Query: 290 -LSQVLDIL------------SACGASA-LESLVFSSSQISGHLTSQLGQFKSLRTLSLD 335
            +SQ+LD++            S C  +  LE LV S +Q+SG +  +L + +SL+ L L 
Sbjct: 309 NMSQLLDLVLANNHLSGSLPKSICSNNTNLEQLVLSGTQLSGEIPVELSKCQSLKQLDLS 368

Query: 336 DNCISGPLPPALGDLSSLTRLDLSRNMLNGSIPLSLGKISHLEYLDLSNNKMNGTLS--- 392
           +N ++G +P AL +L  LT L L  N L G++  S+  +++L++L L +N + G L    
Sbjct: 369 NNSLAGSIPEALFELVELTDLYLHNNTLEGTLSPSISNLTNLQWLVLYHNNLEGKLPKEI 428

Query: 393 ------EIHFV--------------NLTKLTWFSASGNSLILQVNPNWVPPFQLKTLLLM 432
                 E+ F+              N T L      GN    ++ P+     +L  L L 
Sbjct: 429 SALRKLEVLFLYENRFSGEIPQEIGNCTSLKMIDMFGNHFEGEIPPSIGRLKELNLLHLR 488

Query: 433 SCHLGPQFPSWLHSQKNLSVLDISNARISDTIPRWF-----------WNSIFQLSGIIPE 481
              L    P+ L +   L++LD+++ ++S +IP  F           +N+  Q  G +P+
Sbjct: 489 QNELVGGLPASLGNCHQLNILDLADNQLSGSIPSSFGFLKGLEQLMLYNNSLQ--GNLPD 546

Query: 482 SFKNFSNLEVLNLGDNEFVGKIPTWMGEGFTSLLILILRSNKFDGFLPIQLCRLTSLQIL 541
           S  +  NL  +NL  N   G I    G   +S L   + +N F+  +P++L    +L  L
Sbjct: 547 SLISLRNLTRINLSHNRLNGTIHPLCGS--SSYLSFDVTNNGFEDEIPLELGNSQNLDRL 604

Query: 542 DVANNSLSGTMPGCVNNFSAMATIDSSHQSNAMS-YFEVTAYDCEVLEDASI---VMKGS 597
            +  N L+G +P  +     ++ +D S  SNA++    +    C+ L    +    + G 
Sbjct: 605 RLGKNQLTGKIPWTLGKIRELSLLDMS--SNALTGTIPLQLVLCKKLTHIDLNNNFLSGP 662

Query: 598 MVEYNSILNLVRIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQIPENIGNLISIE 657
           +  +   L+ +  + +S N F   +P EL     L  L+L  N   G IP+ IGNL ++ 
Sbjct: 663 IPPWLGKLSQLGELKLSSNQFVESLPTELFNCTKLLVLSLDGNSLNGSIPQEIGNLGALN 722

Query: 658 SLDFSTNQLSSKISQSMSSLSFLNHLNVSNNLLTGKIPSST-QLQSFDAS 706
            L+   NQ S  + Q+M  LS L  L +S N LTG+IP    QLQ   ++
Sbjct: 723 VLNLDKNQFSGSLPQAMGKLSKLYELRLSRNSLTGEIPVEIGQLQDLQSA 772

Together with GSO2, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	794
255543977	1075	serine/threonine-protein kinase bri1, pu	0.986	0.728	0.357	1e-144
315436720	1020	verticillium wilt resistance-like protei	0.964	0.750	0.354	1e-137
255581850	1082	leucine-rich repeat receptor protein kin	0.833	0.611	0.392	1e-128
147766646	939	hypothetical protein VITISV_020133 [Viti	0.925	0.782	0.360	1e-121
209970622	965	HB06p [Malus floribunda]	0.914	0.752	0.346	1e-118
359484185	990	PREDICTED: LRR receptor-like serine/thre	0.833	0.668	0.385	1e-117
350284759	980	receptor-like protein [Malus micromalus]	0.957	0.775	0.338	1e-117
224125666	938	predicted protein [Populus trichocarpa]	0.958	0.811	0.356	1e-117
350284749	980	receptor-like protein [Malus baccata]	0.959	0.777	0.341	1e-116
350284751	980	receptor-like protein [Malus baccata]	0.959	0.777	0.341	1e-116

>gi|255543977|ref|XP_002513051.1| serine/threonine-protein kinase bri1, putative [Ricinus communis] gi|223548062|gb|EEF49554.1| serine/threonine-protein kinase bri1, putative [Ricinus communis]

 Score =  518 bits (1335), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 381/1066 (35%), Positives = 521/1066 (48%), Gaps = 283/1066 (26%)

Query: 1    MKSTMSVSV-ALVFLELFAISSFCSGNSDVGCTDSEREALLKLKQDLKDPSNRLGSWVVD 59
            + S+ ++SV  ++FL    +S F  G  + GC  SEREALL  K  L D SN+L +WV D
Sbjct: 7    IPSSTNISVITILFLWSLLLSIFPVGFCNAGCIQSEREALLNFKLHLSDTSNKLANWVGD 66

Query: 60   GDCCKWAEVVCSNLTGHVLQLSLRNPFRNDL---------RYATTEYEDYMRSMLSGNVN 110
            GDCC+W+ V+C N TGHVL+L L  P  ++          + A+   E Y R+ L+G ++
Sbjct: 67   GDCCRWSGVICHNSTGHVLELHLGTPSFSEYTGPGSFYSQQAASLSVEYYARTALAGKIS 126

Query: 111  PSLVDLKHLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRC 170
            PSL++LK+L +LDLS N+F+GIRIPK+LGS+++LRYLNLS A F G+IP QLGNLSNL+ 
Sbjct: 127  PSLLNLKYLRYLDLSNNNFEGIRIPKFLGSMESLRYLNLSNAGFGGMIPPQLGNLSNLQY 186

Query: 171  LDLS-------WSEYALQVH------------------------SFSWLS--GQIPN--- 194
            LDL         + Y   +H                        SF WL+    +P+   
Sbjct: 187  LDLRVGDVHGFRARYTFNMHVENLHWLSSLSSLKFLDLSYVNLYSFDWLNVINSLPSLLQ 246

Query: 195  ------RLG----------NLTSLRHLDLSA-------------------------NKFN 213
                  +LG          N +SL  LDLS                          N FN
Sbjct: 247  LHLSRCQLGGASFPSTVNLNFSSLAILDLSVNDFQGPIPNSLQNLTSSLKELDLGYNSFN 306

Query: 214  STTAGWLSKFNHLEFLSLSSNGLQGTISSIGLENLTSIKTIDLSLNFELGGPIPTSFVRL 273
            S+   WL  F +LEFLSL+SN LQG ISS+ + N+TS+ T+DLS N  + G IPTSF  L
Sbjct: 307  SSLPNWLYGFTNLEFLSLNSNRLQGNISSL-IGNMTSLITLDLSSNLAISGGIPTSFKHL 365

Query: 274  CELTSIDVSDVKLSQDLSQVLDILSACGASALESLVFSSSQISGHLTSQLGQFKSLRTLS 333
            C L S+ +  V LSQ ++ VL+ILS C +  LES    S Q+SG+LT  LG FK+L +L 
Sbjct: 366  CNLRSLVLDTVTLSQKINDVLEILSGCISDELESFSMYSCQLSGYLTDDLGHFKNLASLD 425

Query: 334  LDDNCISGPLPPA----------------------------------------------- 346
            L  N ISGP+P +                                               
Sbjct: 426  LSYNSISGPIPKSLRHLCNLRSLDLSGNRWSQEINDVLEILSDCPTNVLESLSLSDCELS 485

Query: 347  ------LGDLSSLTRLDLSRNMLNGSIPLSLGKISHLEYLDLSNNKMNGTLSEIHFVNLT 400
                  LG+++SL RL LS N LNG++P S G+++ LE      N + G ++E+HF NLT
Sbjct: 486  GPIPSSLGEMASLIRLSLSSNKLNGTLPESFGQLTRLEIAFFDGNLLEGEVTEVHFANLT 545

Query: 401  KLTWFSAS--GNSLILQVNPNWVPPFQLKTLLLMSCHLGPQFPSWLHSQKNLSVLDISNA 458
            KL  F  S   N  +L+V  NW PPFQL  L L S  +GPQFP+WLHS + L +LD+SN+
Sbjct: 546  KLFIFDGSMMANGPVLRVGSNWTPPFQLHYLSLRSWKIGPQFPAWLHSLRYLEILDLSNS 605

Query: 459  RISDTIPRWFWN----------SIFQLSGIIPE--------------------------- 481
             IS TIP WFW+          S  Q+ G+IP                            
Sbjct: 606  GISSTIPVWFWDMSSNFAYANLSHNQIHGVIPNVPVVSNDYRITMFDMSSNNFRGPVPYF 665

Query: 482  ----------------SFKNF--------SNLEVLNLGDNEFVGKIP-TWMGEGFTSLLI 516
                            S  NF          +EVLNLG N   G+IP  W+   + SL  
Sbjct: 666  SSNLSALDLSSNSFTGSIINFLCYKMQEVKKMEVLNLGGNLLSGEIPDCWL--SWQSLTA 723

Query: 517  LILRSNKFDGFLPIQLCRLTSLQILDVANNSLSGTMPGCVNNFSAMATIDSSHQS---NA 573
            + L +NKF G +P  +  L+ L+ +  ANN LSG +P  + N   + T+D S        
Sbjct: 724  INLSNNKFTGNIPKSIGTLSFLESVHFANNDLSGDIPLSIQNCRKLFTLDFSGNKLVGKI 783

Query: 574  MSYFEVTAYDCEVLEDASIVMKGSMVEYNSILNLVRIIDVSKNNFSGEIPMELTYLRGL- 632
             S+   +  D  +L      + G + E    +  ++I+D++ NNFS  IP   +   G+ 
Sbjct: 784  PSWIGKSIPDMIILILRGNKLHGQIPEEICRMASLQILDLADNNFSSMIPSCFSNFSGMV 843

Query: 633  --------------------------------------------QSLNLSHNIFTGQIPE 648
                                                        ++++LS+N  +G+IP 
Sbjct: 844  KVNDSFGSLTFDQSNVGPSPILIDSAILVIKGRVAEYSTILGFVKAIDLSNNNLSGEIPM 903

Query: 649  NIGNLISIESL------------------------DFSTNQLSSKISQSMSSLSFLNHLN 684
            NI +L+ ++SL                        DFS N L  +I +S+SSL+FL+HLN
Sbjct: 904  NITSLVGLQSLSFSQNSLTGRIPKDIGAMQSLESIDFSQNHLFGEIPESISSLTFLSHLN 963

Query: 685  VSNNLLTGKIPSSTQLQSFDASCFVGNNLCGPPLP-SCT-ENNARAPKDPNGNAEQDED- 741
            +SNN LTGKIPS TQL+ FD S F+ N+LCGPPLP +C+ E    AP D     E +   
Sbjct: 964  LSNNKLTGKIPSGTQLRGFDPSSFMDNDLCGPPLPLNCSKEGILHAPDDEKEREEDENGF 1023

Query: 742  EVDWL-LYVSIAVGFVVGFWCFIGPLLLNRGWRYKYCRFLDGCMDR 786
            EVDW   +VSIA GFVVGFW  +GPL  NR WR+ Y RFL    D+
Sbjct: 1024 EVDWFYFFVSIAPGFVVGFWLVVGPLCFNRRWRFAYFRFLYDLWDK 1069

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|315436720|gb|ADU18533.1| verticillium wilt resistance-like protein [Gossypium barbadense]

 Score =  495 bits (1274), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 362/1022 (35%), Positives = 498/1022 (48%), Gaps = 256/1022 (25%)

Query: 1    MKSTMSVSVALVFLELFAISS----FCSGNSDVGCTDSEREALLKLKQDLKDPSNRLGSW 56
            M  +M V V  +FL L   +S     C+ N +V C + ER+ALLKLKQDL DPS RL SW
Sbjct: 3    MAGSMKVVVTSIFLALLIETSTFEYVCAANRNVSCPEVERQALLKLKQDLIDPSGRLASW 62

Query: 57   VVDGDCCKWAEVVCSNLTGHVLQLSLRNPFRNDLRYATTEYEDYMRSMLSGNVNPSLVDL 116
              + +CC W+ V+C NLTG+V+QL LRNP  +         E Y +   SG +NPSL+DL
Sbjct: 63   GTNLNCCNWSGVICDNLTGNVIQLRLRNPL-DPYNGFYIPSEAYAKMWFSGKINPSLLDL 121

Query: 117  KHLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRCLDLSWS 176
            KHL +LDLSG++F GI+IP++LGS+  LRYLNLS A F G++P QLGNL+NL  LDL   
Sbjct: 122  KHLRYLDLSGSNFGGIQIPEFLGSMHTLRYLNLSAAGFGGVVPPQLGNLTNLHVLDLHDF 181

Query: 177  EYALQVHSFSWLSGQIPNRLGNLTSLRHLDLSANKFNSTT-------------------- 216
               +   +  WLS        +L  L+HLDLS+   +  +                    
Sbjct: 182  SSLVYAENLQWLS--------HLVKLKHLDLSSVNLSKASDWFQVTNTLPSLVEIHLSGC 233

Query: 217  -------------------------------AGWLSKFNHLEFLSLSSNGLQGTISSIGL 245
                                            GW+ K N L  L LS N  QG +   GL
Sbjct: 234  QLHRLPLQADVNFSSLSILDLSSNSFSNPLIPGWIFKLNSLLSLDLSHNNFQGQLPH-GL 292

Query: 246  ENLTSIKTIDLSLN------------------FELG-----GPIPTSFVRLCELTSIDVS 282
             +L+S++ ++L  N                    LG     G I   F  L  LT++D+S
Sbjct: 293  RSLSSLRYLNLYWNNFKSAIPSWLYGLTSLEFLNLGSNYFHGSISNGFQNLTSLTTLDLS 352

Query: 283  D------------------------VKLSQDLSQVLDILSA--CGASALESLVFSSSQIS 316
            D                        + LS+DLS++L  LS+  C  + LESL   S +I 
Sbjct: 353  DNELTGAVPNSMGSLCSLKKIKLSGLHLSRDLSEILQALSSPGCLLNGLESLYLDSCEIF 412

Query: 317  GHLTSQLGQFKSLRTLSLDDNCISGPLPPALGDLSSLTRLDLSRNMLNGSIPLSLGKISH 376
            GHLT ++  FK+L  LSL  N ISG +P +LG L+SL  LDLS+N +NG++P S+G++  
Sbjct: 413  GHLTDRILLFKNLADLSLSRNSISGSIPASLGLLASLRTLDLSQNRVNGTLPESIGQLWK 472

Query: 377  LEYLDLSNNKMNGTLSEIHFVNLTKLTWFSASGNSLILQVNPNWVPPFQLKTLLLMSCHL 436
            +E L LS+N + G +SE+HF NLT+L  F ASGN L+L+ +P WVPPFQL  + L S HL
Sbjct: 473  MEKLWLSHNMLEGVVSEVHFANLTRLRLFQASGNPLVLEASPEWVPPFQLGVMALSSWHL 532

Query: 437  GPQFPSWLHSQKNLSVLDISNARISDTIPRWFWN--SIF--------QLSGIIPE----- 481
            GP+FPSWL SQ++   LDIS   I DT P WFWN  +I+        Q+ G +P      
Sbjct: 533  GPKFPSWLRSQRDFVYLDISVTGIIDTFPNWFWNLSTIYFSLNLSHNQIYGELPHRIGTS 592

Query: 482  ----------SFKNFSN------------------------------------LEVLNLG 495
                      SF +F                                      LE L+L 
Sbjct: 593  PVADLVYVDLSFNHFDGPLPCLSSKVNTLDLSSNLFSGPISNLLCCKMEEPYWLETLHLA 652

Query: 496  DNEFVGKIP-TWMGEGFTSLLILILRSNKFDGFLPIQLCRLTSLQILDVANNSLSGTMPG 554
            DN   G+IP  WM   + +++ + L +N   G +P  +  L  LQ L +  N+LSG +P 
Sbjct: 653  DNHLSGEIPDCWM--NWPNMVSVDLENNSLSGVIPSSMGSLNLLQSLHLRKNNLSGVLPS 710

Query: 555  CVNNFSAMATIDSSHQSNAMSYFEVTAYDCEVLEDASIVMKGSMVEYNSI------LNLV 608
             + N +++  ID        +   +  +  E L D+ I+  GS      I      L+ +
Sbjct: 711  SLQNCTSLLAIDLGENHFVGN---IPGWIGEKLSDSIIISLGSNRFQGQIPDNLCSLSYL 767

Query: 609  RIIDVSKNNFSGEIP---------------------------------------MELTYL 629
             I+D++ NN SG IP                                       + L Y 
Sbjct: 768  TILDLAHNNLSGTIPKCFMNLSAMAANQNSSNPISYAFGHFGTSLETLLLMIKGILLEYS 827

Query: 630  RGLQ---SLNLSHNIFTGQIPENIGNLISIESLDFSTNQLSSKISQ-------------- 672
              LQ   S++LS N   G+IP  + +L+ +  L+ S NQL  +I +              
Sbjct: 828  STLQLVTSMDLSDNNLAGEIPAGMTDLLGLRFLNLSNNQLKGRIPKNIGNLRLLESIDLS 887

Query: 673  ----------SMSSLSFLNHLNVSNNLLTGKIPSSTQLQSFDASCFVGNNLCGPPLPSCT 722
                      SMS+L+FL++LN+S N LTGKIPSSTQLQSFD S + GN+LCGPPL    
Sbjct: 888  RNQLRGEIPPSMSALTFLSYLNLSENNLTGKIPSSTQLQSFDISSYDGNHLCGPPLLEIC 947

Query: 723  ENNARAPKDPNGNAEQDED--EVDWL-LYVSIAVGFVVGFWCFIGPLLLNRGWRYKYCRF 779
              +A    D N N   + D  EVDWL  Y S+A GFVVGFW  +GPLL N+ WR++Y R 
Sbjct: 948  STDATTSSDHNNNENNEGDGLEVDWLWFYASMAFGFVVGFWVVMGPLLFNKSWRFRYFRI 1007

Query: 780  LD 781
            L+
Sbjct: 1008 LE 1009

Source: Gossypium barbadense

Species: Gossypium barbadense

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255581850|ref|XP_002531725.1| leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis] gi|223528628|gb|EEF30645.1| leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]

 Score =  465 bits (1196), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 324/826 (39%), Positives = 432/826 (52%), Gaps = 164/826 (19%)

Query: 114  VDLKHLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRCLDL 173
            V+   L  L+LS N+F    +P ++  L  L  L+LS   F G IP  L N++ LR L L
Sbjct: 253  VNFSSLLTLNLSANNFV---VPSWIFRLTTLATLDLSSNNFVGSIPIHLQNITTLRELYL 309

Query: 174  SWSEYALQVHSFSW-----------------LSGQIPNRLGNLTSLRHLDLSANKFNSTT 216
            S  +  L    F+                  L G+IP+ +GNLTSLR LDLS N      
Sbjct: 310  S--DSGLNSSIFNCLHGLAHLELLHLASNYNLDGKIPSTIGNLTSLRSLDLSFNSLEEGI 367

Query: 217  AGWLSKFNHLEFLSLSSNGLQGTISSIGLENLTSIKTIDLSLNFELGGPIPTSFVRLCEL 276
               +     L+ L LS N L+G I S  + NL S+ ++DLS N   GG IPT F  LC L
Sbjct: 368  PSAIGNLTSLKSLDLSRNSLEGDIPS-AIGNLASLSSLDLSRNSLEGG-IPTWFRNLCNL 425

Query: 277  TSIDVSDVKLSQDLSQVLDILSACGASALESLVFSSSQISGHLTSQLGQFKSLRTLSLDD 336
             S+++S  KLSQ++++V +ILS C +  LESL+  SSQ+SGHL+ +L +FK+L  L L+D
Sbjct: 426  RSLELSINKLSQEINEVFEILSGCVSDILESLILPSSQLSGHLSDRLVKFKNLAYLDLND 485

Query: 337  NCISGPLPPALGDLSSLTRLDLSRNMLNGSIPLSLGKISHLEYLDLSNNKMNGTLSEIHF 396
            N ISGP+P  LG+L+ L  LDL  N LNGS+P+  G +S L Y+D+SNN + G +SEIHF
Sbjct: 486  NLISGPIPENLGELNFLISLDLGNNKLNGSLPIDFGMLSKLNYVDISNNSLEGEISEIHF 545

Query: 397  VNLTKLTWFSASGNSLILQVNPNWVPPFQLKTLLLMSC-HLGPQFPSWLHSQKNLSVLDI 455
             NLT L  F AS N L L+V+P+W P FQ  + + + C  +GPQFP+W+HS K L+ LD+
Sbjct: 546  ANLTNLATFKASSNQLRLRVSPDWFPAFQRVSTISLKCWKVGPQFPTWIHSLKYLAYLDL 605

Query: 456  SNARISDTIPRWFWN----------SIFQLSGIIPE-------------SFKNFS----- 487
            SN+ IS T+P WF N          S  Q+ G IP              S  NF      
Sbjct: 606  SNSTISSTLPTWFHNFSSRLYQINLSHNQMHGTIPYLSIDDSDYSLIDLSSNNFGGSMPF 665

Query: 488  ----------------------------NLEVLNLGDNEFVGKIPT-WMGEGFTSLL--- 515
                                         + VLNLG+N F G+IP  WM   +T+++   
Sbjct: 666  ISSNPFGLDLSNNSFSGSISSFLCYKPRTINVLNLGENLFSGEIPDCWMNWNYTNVIRLS 725

Query: 516  -------------------ILILRSNKFDGFLPIQLCRLTSLQ----------------- 539
                               +L +R+N   G +PI L   TSLQ                 
Sbjct: 726  NNYFSGNIPESIGTLSELSVLNIRNNNLSGEMPISLKHCTSLQVLDLSGNELSGEITTWM 785

Query: 540  --------------------------------ILDVANNSLSGTMPGCVNNFSAMATIDS 567
                                            ILD ANN+L+GT+P C+NNF+A+ +  S
Sbjct: 786  GQHFQGTLILNLRGNKFHGFIPEELCGMTALVILDFANNNLNGTIPRCINNFTALLSGTS 845

Query: 568  SHQSNA--MSYFEVTAYDCEVLEDASIVMKGSMVEYNSILNLVRIIDVSKNNFSGEIPME 625
              +     + Y     Y     E + I   G +VEY++ L  VR +D S N  SGEIP E
Sbjct: 846  YLKDGKVLVDYGPTLTYS----ESSLIERNGKLVEYSTTLGFVRSLDFSNNKLSGEIPEE 901

Query: 626  LTYLRGLQSLNLSHNIFTGQIPENIGNLISIESLDFSTNQLSSKISQSMSSLSFLNHLNV 685
            +T LRGL  LNLSHN  TG+IPENIG + +++ LDFS NQLS +I QSMSSL+FLN+LN+
Sbjct: 902  MTSLRGLLFLNLSHNSLTGRIPENIGAMKALQILDFSRNQLSGEIPQSMSSLTFLNNLNL 961

Query: 686  SNNLLTGKIPSSTQLQSFDASCFVGNNLCGPPLPSCTENNARAPKDPNGNAEQ----DED 741
            S+N L+G IPSSTQLQSFD+S F GNNLCGPPL      +   P       E       +
Sbjct: 962  SSNKLSGIIPSSTQLQSFDSSSFSGNNLCGPPLTQSCSGDGEKPDIEKRTTEDGGNGSPE 1021

Query: 742  EVDWL-LYVSIAVGFVVGFWCFIGPLLLNRGWRYKYCRFLDGCMDR 786
             +DW   YVSIA GFV+GFW  +GPL  N+ WR  Y  FL+   ++
Sbjct: 1022 AIDWFYFYVSIAPGFVIGFWVVVGPLAFNKRWRRLYFNFLEDLWNK 1067

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147766646|emb|CAN76220.1| hypothetical protein VITISV_020133 [Vitis vinifera]

 Score =  443 bits (1140), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 332/921 (36%), Positives = 465/921 (50%), Gaps = 186/921 (20%)

Query: 25  GNSDVGCTDSEREALLKLKQDLKDPSNRLGSWVVDGDCCKWAEVVCSNLTGHVLQLSLRN 84
           G  + GC + ER+ALL+ K  LKDPS  L SWV   DCCKW  V C+N TGHV+++    
Sbjct: 35  GGMNKGCIEVERKALLEFKNGLKDPSGWLSSWV-GADCCKWKGVDCNNQTGHVVKV---- 89

Query: 85  PFRNDLRYATTEYEDYMRSMLSGNVNPSLVDLKHLTHLDLSGNDFQGIRIPKYLGSLKNL 144
               DL+   T +  +  S L G ++ SL+DLKHL +LDLS NDFQGI IP +LGS + L
Sbjct: 90  ----DLKSGGTSHV-WXFSRLGGEISDSLLDLKHLNYLDLSXNDFQGIPIPNFLGSFERL 144

Query: 145 RYLNLSGAEFAGIIPHQLGNLSNLRCLDL----SWSEYALQVHSFSWLSGQIPNRLGNLT 200
           RYL LS A F G+IP  LGNLS LR LDL     +S   ++V + +WLSG        L+
Sbjct: 145 RYLXLSNARFGGMIPPHLGNLSQLRYLDLFGGGDYSPAPMRVSNLNWLSG--------LS 196

Query: 201 SLRHLDLSANKFNSTTAGWLSKFNHLEFLSLSSNGLQGTISSIGLE----------NLTS 250
           SL++LDL     +  T  W+   N L FL      L+  +S+  L           NLTS
Sbjct: 197 SLKYLDLGYVNLSKATTNWMQAVNMLPFL------LELHLSNCELSHFPQYSNPFVNLTS 250

Query: 251 IKTIDLSLN-----------------------FELGGPIP-TSFVRLCELTSIDVSDVKL 286
           +  IDLS N                         + GPIP  + + L  L ++D+S   +
Sbjct: 251 VSVIDLSFNNFNTTLPGWLFNISTLMDLYLNDATIKGPIPRVNLLSLHNLVTLDLSXNNI 310

Query: 287 SQDLSQVLDILSACGASALESLVFSSSQISGHLTSQLGQFKSLRTLSLDD---------- 336
             +  ++++ LSAC  S+LE L  + +Q+SG L   LG FK+L++L L            
Sbjct: 311 GSEGIELVNGLSACANSSLEELNLAGNQVSGQLPDSLGLFKNLKSLDLSSSDIVGPFPNS 370

Query: 337 --------------NCISGPLPPALGDLSSLTRLDLSRNMLNGSIPLSLGKISHLEYLDL 382
                         N ISGP+P  +G+L  +  LDLS N++NG+IP S+G++  L  L L
Sbjct: 371 IQHLTNLESLYLGGNSISGPIPTWIGNLLRMKTLDLSNNLMNGTIPKSIGQLRELTELYL 430

Query: 383 SNNKMNGTLSEIHFVNLTKLTWF----SASGNSLILQVNPNWVPPFQLKTL--------- 429
           + N   G +SEIHF NLTKLT F    S    SL   + P W+PPF L+++         
Sbjct: 431 NRNAWEGVISEIHFSNLTKLTEFSLLVSPKNQSLPFHLRPEWIPPFSLESIEPRRIGGFK 490

Query: 430 ----------------LLMSCHL--GP-----------------------QFPSWLHSQK 448
                           L +  +L  GP                         PS +   K
Sbjct: 491 FQPLGGPLPLRLNVSWLYLGNNLFSGPIPLNIGESSNLEVLDVSGNLLNGSIPSSISKLK 550

Query: 449 NLSVLDISNARISDTIPRWFWNSIF----------QLSGIIPE----------------- 481
            L V+D+SN  +S  IP+  WN +           +LSG IP                  
Sbjct: 551 YLKVIDLSNNHLSGKIPK-NWNDLHSLRAIDLSKNKLSGGIPSWMCSKSSLRWLILGDNN 609

Query: 482 -------SFKNFSNLEVLNLGDNEFVGKIPTWMGEGFTSLLILILRSNKFDGFLPIQLCR 534
                  S +N + L  L+LG+N F G+IP W+GE   SL  L L  N   G +  QLC 
Sbjct: 610 LSGEPFPSLRNCTGLYALDLGNNRFSGEIPXWIGERMPSLGQLRLLGNMXTGDIREQLCX 669

Query: 535 LTSLQILDVANNSLSGTMPGCVNNFSAMATIDSSHQSNAMSYFEVTAYDCEVLEDASIVM 594
           L  L ILD+   +LSG +P C+ N +A++ +    ++     F+  +      E   +V+
Sbjct: 670 LCXLHILDLVVXNLSGPIPQCLGNLTALSFVTLLDRN-----FDDPSIHYSYSERMELVV 724

Query: 595 KGSMVEYNSILNLVRIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQIPENIGNLI 654
            G  +E+ SIL +V +ID+S NN  GEIP E+T L  L +LNLS N  TG+IPE IG + 
Sbjct: 725 TGQSMEFESILPIVNLIDLSSNNIWGEIPKEITNLSTLGTLNLSRNQLTGKIPEKIGAMQ 784

Query: 655 SIESLDFSTNQLSSKISQSMSSLSFLNHLNVSNNLLTGKIPSSTQLQSF-DASCFVGN-N 712
            +E+LD S N LS  I  SMSS++ LNHLN+S+N L+G IP++ Q  +F D S +  N  
Sbjct: 785 GLETLDLSCNCLSGPIPPSMSSITSLNHLNLSHNRLSGPIPTTNQFSTFNDPSIYEANLG 844

Query: 713 LCGPPLPS-CTENNARAPKDPNGNAEQDEDEVDWLLYVSIAVGFVVGFWCFIGPLLLNRG 771
           LCGPPL + C+  N +  KD     ++DE ++ W  ++S+ +GF VGFW   G L+L + 
Sbjct: 845 LCGPPLSTNCSTLNDQDHKD--EEEDEDEWDMSW-FFISMGLGFPVGFWAVCGSLVLKKS 901

Query: 772 WRYKYCRFLDGCMDRFGCFVS 792
           WR  Y RF+D   DR   F +
Sbjct: 902 WRQAYFRFIDETRDRLYVFTA 922

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|209970622|gb|ACJ03072.1| HB06p [Malus floribunda]

 Score =  433 bits (1113), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 322/929 (34%), Positives = 445/929 (47%), Gaps = 203/929 (21%)

Query: 17  FAISSFCSGNSDVGCTDSEREALLKLKQDLKDPSNRLGSWVVDGDCCKWAEVVCSNLTGH 76
           F     C+GN  V C + E+ ALL  KQ L+DPSNRL SW+ DGDCC W  VVC  LTGH
Sbjct: 47  FTDVGLCNGNLRVRCREGEKRALLMFKQGLEDPSNRLSSWISDGDCCNWTGVVCDPLTGH 106

Query: 77  VLQLSLRNP-FRNDLRYATTEYEDY-MRSMLSGNVNPSLVDLKHLTHLDLSGNDFQGIRI 134
           V +L L NP F+ D  YA   ++ Y   + L G +NPSL+ LKHL +LDLS N+FQG++I
Sbjct: 107 VRELRLTNPNFQRDFHYAI--WDSYNSNTWLGGKINPSLLHLKHLNYLDLSYNNFQGMQI 164

Query: 135 PKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRCLDLSWSEYALQVHSFSWLSG---- 190
           P +LGSLK LRYLNLS A F G+IP QLGNL+NL  L LS     L+V +  W+S     
Sbjct: 165 PSFLGSLKTLRYLNLSEAGFRGLIPPQLGNLTNLHFLSLS---DNLKVENLEWISSLFHL 221

Query: 191 -----------------QIPNRLG---------------------NLTSLRHLDLSANKF 212
                            Q  N+L                      N TSL  LDLS N F
Sbjct: 222 KYLDLSSVNVSKASNWLQAINKLPFLVELHMVDCQLDHIPPLPIINFTSLSVLDLSENSF 281

Query: 213 NSTTAGWLSKFNHLEFLSLSSNGLQGTISSIGLENLTSIKTIDLSLNFELGGPIPTSFVR 272
           +S    W+    +L  L L + G QGT SS         K  DLSL+             
Sbjct: 282 DSLMPRWVFSLRNLTSLYLENCGFQGTFSS-------HPKEPDLSLD------------N 322

Query: 273 LCELTSIDVSDVKLSQDLSQVLDILSACGASALESLVFSSSQISGHLTSQLGQFKSLRTL 332
           LCEL  +D+S  K + + S + + LS CG   ++SL  S +  SGHLT Q+G+F++L  L
Sbjct: 323 LCELMDLDLSYNKFNGNASDIFESLSVCGPDRIKSLSLSKNNFSGHLTEQVGEFRNLSHL 382

Query: 333 SLDDNCISGPLPPALGDLSSLTRLDLSRNMLNGSIPLSLGKISHLEYLDLSNNKMNGTLS 392
            +  N ISGP+P +LG+LS L  L +S N  NG++P  LG++  L YL++S+N   G +S
Sbjct: 383 EIYGNSISGPIPISLGNLSCLEFLIISDNRFNGTLPEVLGQLKMLSYLEISDNPFEGVVS 442

Query: 393 EIHFVNLTKLTWFSASGNSLILQVNPNWVPPFQLKTLLLMSCHLGPQFPSWLHSQKNLSV 452
           E HF +LTKL  F A+ N L L+ + +W+PPFQL+ L L   HLGP+FP WL +Q  L +
Sbjct: 443 EAHFSHLTKLKHFIAARNPLTLKTSRDWLPPFQLERLWLDYWHLGPEFPVWLRTQTQLKL 502

Query: 453 LDISNARISDTIPRWFWNSIFQLSGIIPESFKNFSNLE--------VLNLGDNEFVGKIP 504
           L + N  ISDT P WFWN   QL  +   S +    ++         ++L  N+F G +P
Sbjct: 503 LSLPNTEISDTFPTWFWNISSQLWTVNLSSNQLHGEIQGIVGGSLFSVDLSFNQFNGSLP 562

Query: 505 TW-------------------------MGEGFTSLLILILRSNKFDGFLPIQLCRLTSLQ 539
                                      M E   +L+ L LR N   G +P  L     L 
Sbjct: 563 LVSSSVSSLDLSGSSFSGSLFHFFCDRMNEP-KNLVSLHLRDNFLTGEIPNCLMNWKRLS 621

Query: 540 ILDVANNSLSGTMPGCVNNFSAMATIDSSHQSNAMSYFEVTAYDCE---VLEDASIVMKG 596
           IL++ +N L+G +P  +    ++ ++   H ++      ++  +C    V+        G
Sbjct: 622 ILNLNSNKLTGNIPSSIGYLESLVSLH-LHNNHLYGELPLSMQNCTGLLVVNLGQNKFSG 680

Query: 597 SMVEY--NSILNLVRIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQIPENIGNLI 654
           S+  +   S+ NL+ I+++  N   G+I  EL   + LQ L+L++N  +G IP    N  
Sbjct: 681 SIPTWIGTSLPNLM-ILNIRSNKLQGDIRHELCDRKTLQILDLAYNSLSGAIPTCFQNFS 739

Query: 655 SIES----------------------------------------LDFSTNQLSSKISQSM 674
           ++ +                                        +D S N LS +I + +
Sbjct: 740 AMATTPDVNKPLGFAPLFMESVIVVTKGRQDEYYGMSTLGLVIVMDLSDNMLSGEIPEEL 799

Query: 675 SSLSFLNHLNVSNNLLTGKIPS-------------------------------------- 696
           +SL+ L  LN+SNNLLTG+IPS                                      
Sbjct: 800 TSLTGLQSLNLSNNLLTGRIPSKIGNMKWLQSMDLSMNELDGEIPQSMRSLTFLSHLNVS 859

Query: 697 ----------STQLQSFDASCFVGNNLCGPPLPSCTENNARAP---KDPNGNAEQDEDEV 743
                     STQLQS D S F+GN LCG PL +    +   P   +D  G     EDE 
Sbjct: 860 YNNLTGEIPKSTQLQSLDQSSFIGNELCGAPLNTNCSPDRMPPTVEQDGGGGYRLLEDE- 918

Query: 744 DWLLYVSIAVGFVVGFWCFIGPLLLNRGW 772
            W  YVS+ VGF  GFW  +G LL+N  W
Sbjct: 919 -W-FYVSLGVGFFTGFWIVLGSLLVNMPW 945

Source: Malus floribunda

Species: Malus floribunda

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359484185|ref|XP_002273824.2| PREDICTED: LRR receptor-like serine/threonine-protein kinase FLS2-like [Vitis vinifera]

 Score =  429 bits (1104), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 284/737 (38%), Positives = 407/737 (55%), Gaps = 75/737 (10%)

Query: 21  SFCSGNSDVGCTDSEREALLKLKQDLKDPSNRLGSWVVDGDCCKWAEVVCSNLTGHVLQL 80
           S C  N ++ C + E+EALLK KQ L DPS RL SWV + DCCKW  V C+N TG V++L
Sbjct: 26  SSCDANQNMDCLEVEKEALLKFKQGLTDPSGRLSSWVGE-DCCKWRGVSCNNRTGRVIKL 84

Query: 81  SLRNPFRNDLRYATTEYEDYMRSMLSGNVNPSLVDLKHLTHLDLSGNDFQGIRIPKYLGS 140
            L NPF N L    T  E      L G +NPSL+ LK+L +LDLS N+F G+ IPK++GS
Sbjct: 85  KLGNPFPNSLEGDGTASE------LGGEINPSLLSLKYLNYLDLSMNNFGGMEIPKFIGS 138

Query: 141 LKNLRYLNLSGAEFAGIIPHQLGNLSNLRCLDLSWSEYALQVHSFSWLSG---------- 190
           L  LRYLNLSGA F G+IP  + NLSNLR LDL+        +   WLSG          
Sbjct: 139 LGKLRYLNLSGASFGGMIPPNIANLSNLRYLDLNTYSIEPNKNGLEWLSGLSSLKYLNLG 198

Query: 191 ------------------------QIPN----------RLGNLTSLRHLDLSANKFNSTT 216
                                    +PN             N TSL  LDLS N+F+ST 
Sbjct: 199 GIDLSEAAAYWLQTINTLPSLLELHMPNCQLSNFSLSLPFLNFTSLSILDLSNNEFDSTI 258

Query: 217 AGWLSKFNHLEFLSLSSNGLQGTISSIGLENLTSIKTIDLSLNFELGGPIPTSFVRLCEL 276
             WL   + L +L L+SN LQG +     +N TS++ +DLS N  + G  P +   LC L
Sbjct: 259 PHWLFNLSSLVYLDLNSNNLQGGLPD-AFQNFTSLQLLDLSQNSNIEGEFPRTLGNLCCL 317

Query: 277 TSIDVSDVKLSQDLSQVLDILSACGASALESLVFSSSQISGHLTSQLGQFKSLRTLSLDD 336
            ++ +S  KLS ++++ LD LSAC  S LE+L    ++++G+L   LG  K+LR L L  
Sbjct: 318 RTLILSVNKLSGEITEFLDGLSACSYSTLENLDLGFNELTGNLPDSLGHLKNLRYLQLRS 377

Query: 337 NCISGPLPPALGDLSSLTRLDLSRNMLNGSIPLSLGKISHLEYLDLSNNKMNGTLSEIHF 396
           N  SG +P ++G LSSL  L LS+N + G IP SLG++S L  L+L+ N   G ++E HF
Sbjct: 378 NSFSGSIPESIGRLSSLQELYLSQNQMGGIIPDSLGQLSSLVVLELNGNSWEGVITEAHF 437

Query: 397 VNLTKLTWFSASGN----SLILQVNPNWVPPFQLKTLLLMSCHLGPQFPSWLHSQKNLSV 452
            NL+ L   S + +    SL+  V+ +W PPF+L  + L SC LGP+FP+WL SQ  L+ 
Sbjct: 438 ANLSSLKQLSITRSSPNVSLVFNVSSDWAPPFKLTYINLRSCQLGPKFPTWLRSQNELTT 497

Query: 453 LDISNARISDTIPRWFWN----------SIFQLSGIIPESFKNFSNLEVLNLGDNEFVGK 502
           + ++NARIS TIP W W           +  QLSG +P S   FS L  ++L  N F G 
Sbjct: 498 VVLNNARISGTIPDWLWKLNLQLRELDIAYNQLSGRVPNSLV-FSYLANVDLSSNLFDGP 556

Query: 503 IPTWMGEGFTSLLILILRSNKFDGFLPIQLCRLTS-LQILDVANNSLSGTMPGCVNNFSA 561
           +P W     +++  L LR N F G +P  + ++   L  LD++ NSL+G++P  + N  A
Sbjct: 557 LPLWS----SNVSTLYLRDNLFSGPIPQNIAQVMPILTDLDISRNSLNGSIPWSMGNLQA 612

Query: 562 MAT--IDSSHQSNAMSYFEVTAYDCEVLEDASIVMKGSMVEYNSILNLVRIIDVSKNNFS 619
           + T  I +++ S  +  F        +++ ++  + G++      L  +R + +S NN S
Sbjct: 613 LITLVISNNNLSGEIPQFWNKMPSLYIIDMSNNSLSGTIPRSLGSLTALRFLVLSDNNLS 672

Query: 620 GEIPMELTYLRGLQSLNLSHNIFTGQIPENIG-NLISIESLDFSTNQLSSKISQSMSSLS 678
           GE+P +L     L+SL+L  N F+G IP  IG ++ S+  L   +N  S KI   + +LS
Sbjct: 673 GELPSQLQNCSALESLDLGDNKFSGNIPSWIGESMSSLLILALRSNFFSGKIPSEICALS 732

Query: 679 FLNHLNVSNNLLTGKIP 695
            L+ L++S+N ++G IP
Sbjct: 733 ALHILDLSHNNVSGFIP 749

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|350284759|gb|AEQ27751.1| receptor-like protein [Malus micromalus]

 Score =  429 bits (1102), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 334/987 (33%), Positives = 469/987 (47%), Gaps = 227/987 (22%)

Query: 1   MKSTMSVSVALV-FLELFAIS---SFCSGNSDVG--CTDSEREALLKLKQDLKDPSNRLG 54
           M+ TM V + L+ FL +  I+     C+GN      C +SER ALL  KQDLKDP+N+L 
Sbjct: 1   MERTMRVVILLIRFLAIATITFSIGLCNGNPSWPPLCKESERRALLMFKQDLKDPANQLA 60

Query: 55  SWVVD--GDCCKWAEVVCSNLTGHVLQLSLRNPFRNDLRYATTEYEDYMRSMLSGNVNPS 112
           SWV +   DCC W  VVC ++TGH+ +L L N   +DL            S   G +NPS
Sbjct: 61  SWVAEEGSDCCSWTRVVCDHMTGHIHELHL-NGSDSDLD---------PDSYFGGKINPS 110

Query: 113 LVDLKHLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRCLD 172
           L+ LKHL  LDLS NDF   RIP + GS+ +L +LNL+ + F GIIPH+LGNLS+L  L+
Sbjct: 111 LLSLKHLNFLDLSYNDFYTTRIPSFFGSMTSLTHLNLAYSWFDGIIPHKLGNLSSLHYLN 170

Query: 173 LS-WSEYALQVHSFSWLSG---------------------QIPNRLG------------- 197
           LS      L+V +  W+SG                     Q+ N L              
Sbjct: 171 LSTLYRSNLKVENLQWISGLSLLKHLDLSNVNLGKASDWLQVTNMLPSLVELHMSYCHLH 230

Query: 198 --------NLTSLRHLDLSANKFNSTTAGWLSKFNHLEFLSLSSNGLQGTISSIGLENLT 249
                   N TSL  LDLS N FNS  + W+    +L  + LS  G QG I SI  +N+T
Sbjct: 231 QIPPLPTPNFTSLVVLDLSGNSFNSLMSRWVFSLKNLISIHLSDCGFQGPIPSIS-QNIT 289

Query: 250 SIKTIDLSLNF-----------------------ELGGPIPTSFVRLCELTSIDVSDVKL 286
           S++ IDLS N+                       +L G +P+S   +  L ++++   + 
Sbjct: 290 SLREIDLSSNYISLDLIPKWLFNQKFLELSLEANQLTGQLPSSIQNMTGLIALNLGWNEF 349

Query: 287 SQDLSQVLDILSACGASALESLVFSSSQISGHLTSQLGQFKSLRTLSLDDNCISGPLPPA 346
           +  + + L  L+      LESL  S + + G ++S +G  KSLR L L +N ISGP+P +
Sbjct: 350 NSTIPEWLYSLNN-----LESLHLSHNALRGEISSSIGNLKSLRHLDLSNNSISGPIPMS 404

Query: 347 LGDLSSLTRLDLSRNMLNGSIPLSLGKISHLEYLDLSNNKMNGTLSEIHFVNLTKLTWFS 406
           LG+LSSL +LD+S N  NG+    + ++  L  LD+S N + G +SE+ F NL KL  F 
Sbjct: 405 LGNLSSLEKLDISVNQFNGTFTEVIDQLKMLTDLDISYNSLEGVVSEVSFSNLIKLKHFV 464

Query: 407 ASGNSLILQVNPNWVPPFQLKTLLLMSCHLGPQFPSWLHSQKNLSVLDISNARISDTIPR 466
           A GNS  L+ + +WVPPFQL+ L L S HLGP++P WL +Q  L  L +S   IS TIP 
Sbjct: 465 AKGNSFTLKTSRDWVPPFQLEILQLDSWHLGPKWPMWLRTQTQLKELSLSGTGISSTIPT 524

Query: 467 WFWN--------------------------------SIFQLSGIIP-------------- 480
           WFWN                                S  Q +G +P              
Sbjct: 525 WFWNLTSQVEYLNLSRNQLYGQIQNIVAGPSSVVDLSSNQFTGALPIVPTSLFFLDLSRS 584

Query: 481 ---ESFKNF--------SNLEVLNLGDNEFVGKIPT-WMGEGFTSLLILILRSNKFDGFL 528
              ES  +F          L VLNLG+N   GK+P  WM   +  L  L L +N   G +
Sbjct: 585 SFSESVFHFFCDRPDEPKQLSVLNLGNNLLTGKVPDCWM--SWQHLRFLNLENNNLTGNV 642

Query: 529 PIQLCRLTSLQILDVANNSLSGTMPGCVNNFSAMATIDSSHQSNAMS---YFEVTAYDCE 585
           P+ +  L  L  L + NN L G +P  + N + ++ +D S    + S   +   +     
Sbjct: 643 PMSMGYLQYLGSLHLRNNHLYGELPHSLQNCTWLSVVDLSENGFSGSIPIWIGKSLSGLN 702

Query: 586 VLEDASIVMKGSMVEYNSILNLVRIIDVSKNNFSGEIP---------------------- 623
           VL   S   +G +      L  ++I+D++ N  SG IP                      
Sbjct: 703 VLNLRSNKFEGDIPNEVCYLKSLQILDLAHNKLSGMIPRCFHNLSALADFSESFYPTSYW 762

Query: 624 -----------------MELTYLRGL---QSLNLSHNIFTGQIPENIGNLISIESLDFST 663
                            +E+ Y R L   + ++LS N   G+IPE +  L++++SL+ S 
Sbjct: 763 GTNWSELSENAILVTKGIEMEYSRILGFVKVMDLSCNFMYGEIPEELTGLLALQSLNLSN 822

Query: 664 NQLSSKISQ------------------------SMSSLSFLNHLNVSNNLLTGKIPSSTQ 699
           N+ + +I                          SM++L+FL+HLN+S N LTG+IP STQ
Sbjct: 823 NRFTGRIPSNIGNMAWLETLDFSMNQLDGEIPPSMTNLTFLSHLNLSYNNLTGRIPESTQ 882

Query: 700 LQSFDASCFVGNNLCGPPL-PSCTENNARAP----KDPNGNAEQDEDEVDWLLYVSIAVG 754
           LQS D S FVGN LCG PL  +C+ N    P    +D  G     EDE  W  YVS+ VG
Sbjct: 883 LQSLDQSSFVGNKLCGAPLNKNCSTNGVIPPPTVEQDGGGGYRLLEDE--W-FYVSLGVG 939

Query: 755 FVVGFWCFIGPLLLNRGWRYKYCRFLD 781
           F  GFW  +G LL+N  W     + L+
Sbjct: 940 FFTGFWIVLGSLLVNMPWSILLSQLLN 966

Source: Malus micromalus

Species: Malus micromalus

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224125666|ref|XP_002329688.1| predicted protein [Populus trichocarpa] gi|222870596|gb|EEF07727.1| predicted protein [Populus trichocarpa]

 Score =  428 bits (1100), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 335/940 (35%), Positives = 449/940 (47%), Gaps = 179/940 (19%)

Query: 1   MKSTMSVSVALVFLELFAIS-SFCSG--NSDVGCTDSEREALLKLKQDLKDPSNRLGSWV 57
           M+ST S  VA    +L  +   F S    ++  C + ER+ALL  KQ+L+ PS  L SW 
Sbjct: 1   MESTSSGLVASTKEKLHQLRPRFISAAERAEFRCIERERQALLSFKQELEYPSGLLSSWG 60

Query: 58  VD----GDCCKWAEVVCSNLTGHVLQLSLRNPFRNDLRYATTEYEDYMRSMLSGNVNPSL 113
            +     DCCKW  V C+N TG +  L L                      + GN+  SL
Sbjct: 61  SEEGEKSDCCKWVGVGCNNRTGRITMLDLHG------------------LAVGGNITDSL 102

Query: 114 VDLKHLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRCLDL 173
           ++L+HL +LDLS N F G   P ++GSL+ LRYL+LS     G + +QLGNLS+L+ LDL
Sbjct: 103 LELQHLNYLDLSDNSFYGNPFPSFVGSLRKLRYLSLSNNGLIGRLSYQLGNLSSLQSLDL 162

Query: 174 SWSEYALQVHSFSWLSG---------------------QIPNRLGNLT------------ 200
           S++ + +   S  WLS                      Q+ N+L  L             
Sbjct: 163 SYN-FDVSFESLDWLSRLSFLEHLHLTGNHLTQASDWIQVVNKLPRLKDLQLSDCSLLSI 221

Query: 201 ------------SLRHLDLSANKFNSTTAGWLSKF-NHLEFLSLSSNGLQGTISSIGLEN 247
                       SL  LDLS N  +S+   WLS   + L  L LS+N LQG+I       
Sbjct: 222 VPPALSFVNSSRSLAILDLSFNHLSSSIVPWLSNSSDSLVDLDLSANQLQGSIPD-AFGK 280

Query: 248 LTSIKTIDLSLNFELGGPIPTSFVRLCELTSIDVSDVKLSQDLSQVLDILSACGASALES 307
           +TS+  + L+ N +L G IP SF  +C L  +D+S   LS  L + +  +  C  ++L+S
Sbjct: 281 MTSLTNLHLADN-QLEGGIPRSFGGMCSLRELDLSPNNLSGPLPRSIRNMHGCVENSLKS 339

Query: 308 LVFSSSQISGHLTSQLGQFKSLRTLSLDDNCISGPLPPALGDLSSLTRLDLSRNMLNGSI 367
           L    +Q+ G L     +F S+  L +  N ++G LP      S L  L+LS N L GS+
Sbjct: 340 LQLRDNQLHGSLP-DFTRFSSVTELDISHNKLNGSLPKRFRQRSELVSLNLSDNQLTGSL 398

Query: 368 P-----------------------LSLGKISHLEYLDLSNNKMNGTLSEIHFVNLTKLTW 404
           P                        S+G +S LE L++  N + G +SE HF NL+KL  
Sbjct: 399 PDVTMLSSLREFLIYNNRLDGNASESIGSLSQLEKLNVGRNSLQGVMSEAHFSNLSKLQE 458

Query: 405 FSASGNSLILQVNPNWVPPFQLKTLLLMSCHLGPQFPSWLHSQKNLSVLDISNARISDTI 464
              S NSL+L+   +W PPF L  L L SC+LGP FP WL +Q NL VLDIS   ISDTI
Sbjct: 459 LDLSHNSLVLKFTYDWAPPFLLNYLYLSSCNLGPHFPQWLRNQNNLWVLDISGTGISDTI 518

Query: 465 PRWFW-------------------------------------NSIF-------------Q 474
           P WFW                                     NS+               
Sbjct: 519 PNWFWDLSNSSLTLLNFSHNNMRGPQLISLDLSKNLLSGNLPNSLIPFDGLAFLDLAHNN 578

Query: 475 LSGIIPESFKNFSNLEVLNLGDNEFV------------------------GKIPTWMGEG 510
            SG IP S  + S L  LNL ++ F                         GKIP WMGE 
Sbjct: 579 FSGRIPRSLGSLSMLRTLNLRNHSFSRRLPLSLKKCTDLMFLDLSINKLHGKIPAWMGES 638

Query: 511 FTSLLILILRSNKFDGFLPIQLCRLTSLQILDVANNSLSGTMPGCVNNFSAMATIDSSHQ 570
             SL  L L+SN+F G +P   CRL  ++IL+++ N++SG +P C+NN++AM  I     
Sbjct: 639 LLSLKFLFLQSNEFHGSIPSHFCRLRHIKILNLSLNNISGIIPKCLNNYTAM--IQKGEL 696

Query: 571 SNAMSYFEVTAYDCEVLEDASIVMKGSMVEYNSILNLVRIIDVSKNNFSGEIPMELTYLR 630
           ++  S         + +  A +  KG   EY   L L RIID +    +GEIP E+  L 
Sbjct: 697 TDINSGELGLGQPGQHVNKAWVDWKGRQYEYVRSLGLFRIIDFAGKKLTGEIPEEIISLL 756

Query: 631 GLQSLNLSHNIFTGQIPENIGNLISIESLDFSTNQLSSKISQSMSSLSFLNHLNVSNNLL 690
            L ++NLS N  TG IP  IG L  +ESLD S NQLS  I  S +SLSFL++LN+S N L
Sbjct: 757 QLVAMNLSGNNLTGGIPLKIGQLKQLESLDLSGNQLSGVIPSSTASLSFLSYLNLSYNNL 816

Query: 691 TGKIPSSTQLQSFDASCFVGN-NLCGPPLPSCTENNARAPK----DPNGNAEQDEDEVDW 745
           +GKIPS TQLQSF+AS F GN  LCG P+      +   P+    D N   E   DE   
Sbjct: 817 SGKIPSGTQLQSFNASAFAGNLALCGLPVTHKCPGDEATPRPLANDDNQGNETVVDEFRR 876

Query: 746 LLYVSIAVGFVVGFWCFIGPLLLNRGWRYKYCRFLDGCMD 785
             Y ++ +GF V FW   G LLL R WR+ Y RFLD   D
Sbjct: 877 WFYTALGIGFGVFFWGVSGALLLKRSWRHAYFRFLDEAWD 916

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|350284749|gb|AEQ27746.1| receptor-like protein [Malus baccata]

 Score =  427 bits (1097), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 336/985 (34%), Positives = 462/985 (46%), Gaps = 223/985 (22%)

Query: 1   MKSTMSVSVALV-FLELFAIS---SFCSGNSDVG--CTDSEREALLKLKQDLKDPSNRLG 54
           M+ TM V + L  FL +  I+     C+GN      C  SER ALL  KQDLKDP NRL 
Sbjct: 1   MERTMRVVILLTRFLAIATITFSIGLCNGNPGWPPLCKVSERRALLMFKQDLKDPVNRLA 60

Query: 55  SWVV--DGDCCKWAEVVCSNLTGHVLQLSLRNPFRNDLRYATTEYEDY-MRSMLSGNVNP 111
           SWV   D DCC W  VVC ++TGH+ +L L            + Y D+   S   G +NP
Sbjct: 61  SWVAEEDSDCCSWTGVVCDHVTGHIHELHLN-----------SSYSDWEFNSFFGGKINP 109

Query: 112 SLVDLKHLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRCL 171
           SL+ LKHL +LDLS NDF G +IP + GS+ +L +LNL+ +E  GIIPH+LGNLS+LR L
Sbjct: 110 SLLSLKHLNYLDLSNNDFNGTQIPSFFGSMTSLTHLNLAYSELYGIIPHKLGNLSSLRYL 169

Query: 172 DLSWSEYA--LQVHSFSWLSG---------------------QIPNRLG----------- 197
           +LS S Y   L+V +  W+SG                     Q+ N L            
Sbjct: 170 NLS-SFYGSNLKVENLQWISGLSLLKHLDLSSVNLSKASDWLQVTNMLPSLVELDMSDCE 228

Query: 198 ----------NLTSLRHLDLSANKFNSTTAGWLSKFNHLEFLSLSSNGLQGTISSIGLEN 247
                     N TSL  LDLS N FN     W+    +L  L LS  G Q  I SI  +N
Sbjct: 229 LDQIPPLPTPNFTSLVVLDLSRNSFNCLMPRWVFSLKNLVSLHLSFCGFQSPIPSIS-QN 287

Query: 248 LTSIKTIDLSLNFELGGPIPTSFVRLCELTSIDVSDVKLSQDLSQVLDILSACGASALES 307
           +TS++ IDLS N     PIP   +   ++  + +   +L+  L + +  ++      L  
Sbjct: 288 ITSLREIDLSFNSIGLDPIP-KLLFTQKILELSLESNQLTGQLPRSIQNMTGLTTLNLGG 346

Query: 308 LVFSSS-------------------QISGHLTSQLGQFKSLRTLSLDDNCISGPLPPALG 348
             F+S+                    + G ++S +G  KSLR   L  N ISGP+P +LG
Sbjct: 347 NEFNSTIPEWLYSLNNLESLLLFGNALRGEISSSIGNLKSLRHFDLSSNSISGPIPMSLG 406

Query: 349 DLSSLTRLDLSRNMLNGSIPLSLGKISHLEYLDLSNNKMNGTLSEIHFVNLTKLTWFSAS 408
           +LSSL +L +S N  NG+   ++G++  L  LD+S N + G +SEI F NL KL  F A 
Sbjct: 407 NLSSLEKLYISENHFNGTFTEAIGQLKMLTDLDISYNSLEGVVSEISFSNLIKLKHFVAK 466

Query: 409 GNSLILQVNPNWVPPFQLKTLLLMSCHLGPQFPSWLHSQKNLSVLDISNARISDTIPRWF 468
           GNS  L+ + +WVPPFQL+ L L S HLGP++P WL +Q  L  L +S   IS TIP WF
Sbjct: 467 GNSFTLKTSRDWVPPFQLEILKLDSWHLGPEWPMWLRTQTQLKELSLSGTGISSTIPTWF 526

Query: 469 WNSIF----------QLSG-------------------------IIPESF-------KNF 486
           WN  F          QL G                         I+P S         +F
Sbjct: 527 WNLTFHVQYLNLSHNQLYGQIQNIVAGPSSAVDLSSNQFTGALPIVPTSLMWLDLSNSSF 586

Query: 487 S---------------NLEVLNLGDNEFVGKIP-TWMGEGFTSLLILILRSNKFDGFLPI 530
           S                L +L LG+N   GK+P  WM   + SL  L L +N   G +P+
Sbjct: 587 SGSVFHFFCDRPDEPKQLGILRLGNNFLTGKVPDCWM--SWPSLAFLNLENNNLTGNVPM 644

Query: 531 QLCRLTSLQILDVANNSLSGTMPGCVNNFSAMATIDSSHQSNAMS---YFEVTAYDCEVL 587
            +  L  L+ L + NN L G +P  + N ++++ +D S    + S   +   +     VL
Sbjct: 645 SMGYLDWLESLHLRNNHLYGELPHSLQNCTSLSVVDLSENGFSGSIPIWIGKSLSGLNVL 704

Query: 588 EDASIVMKGSMVEYNSILNLVRIIDVSKNNFSGEIP------------------------ 623
              S   +G +      L  ++I+D++ N  SG IP                        
Sbjct: 705 NLRSNKFEGDIPNEVCYLKSLQILDLAHNKLSGMIPRCFHNLSAMANFSQSFSPTSFWGM 764

Query: 624 ---------------MELTYLRGL---QSLNLSHNIFTGQIPENIGNLISIESLDFSTN- 664
                          ME+ Y + L   + ++LS N   G+IPE +  L++++ L+ S N 
Sbjct: 765 VASGLTENAILVTKGMEMEYTKILGFVKGMDLSCNFMYGEIPEELTGLLALQYLNLSNNR 824

Query: 665 -----------------------QLSSKISQSMSSLSFLNHLNVSNNLLTGKIPSSTQLQ 701
                                  QL  +I  SM+ L+FL+HLN+S N LTG+IP STQLQ
Sbjct: 825 FTGRIPSKIGSMAQLESLDFSMNQLDGEIPPSMTILTFLSHLNLSYNNLTGRIPESTQLQ 884

Query: 702 SFDASCFVGNNLCGPPL-PSCTENNARAP----KDPNGNAEQDEDEVDWLLYVSIAVGFV 756
           S D S FVGN LCG PL  +C+EN    P     D  G     EDE  W  YVS+ VGF 
Sbjct: 885 SLDQSSFVGNELCGAPLNKNCSENGVIPPPTVEHDGGGGYSLVEDE--W-FYVSLGVGFF 941

Query: 757 VGFWCFIGPLLLNRGWRYKYCRFLD 781
            GFW  +G LL+N  W     + L+
Sbjct: 942 TGFWIVLGSLLVNMPWSILLSQLLN 966

Source: Malus baccata

Species: Malus baccata

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|350284751|gb|AEQ27747.1| receptor-like protein [Malus baccata]

 Score =  426 bits (1095), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 336/985 (34%), Positives = 461/985 (46%), Gaps = 223/985 (22%)

Query: 1   MKSTMSVSVALV-FLELFAIS---SFCSGNSDVG--CTDSEREALLKLKQDLKDPSNRLG 54
           M+ TM V + L  FL +  I+     C+GN      C  SER ALL  KQDLKDP NRL 
Sbjct: 1   MERTMRVVILLTRFLAIATITFSIGLCNGNPGWPPLCKVSERRALLMFKQDLKDPVNRLA 60

Query: 55  SWVV--DGDCCKWAEVVCSNLTGHVLQLSLRNPFRNDLRYATTEYEDY-MRSMLSGNVNP 111
           SWV   D DCC W  VVC ++TGH+ +L L            + Y D+   S   G +NP
Sbjct: 61  SWVAEEDSDCCSWTGVVCDHVTGHIHELHLN-----------SSYSDWEFNSFFGGKINP 109

Query: 112 SLVDLKHLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRCL 171
           SL+ LKHL +LDLS NDF G +IP + GS+ +L +LNL+ +E  GIIPH+LGNLS+LR L
Sbjct: 110 SLLSLKHLNYLDLSNNDFNGTQIPSFFGSMTSLTHLNLAYSELYGIIPHKLGNLSSLRYL 169

Query: 172 DLSWSEYA--LQVHSFSWLSG---------------------QIPNRLG----------- 197
           +LS S Y   L+V +  W+SG                     Q+ N L            
Sbjct: 170 NLS-SFYGSNLKVENLQWISGLSLLKHLDLSSVNLSKASDWLQVTNMLPSLVELDMSDCE 228

Query: 198 ----------NLTSLRHLDLSANKFNSTTAGWLSKFNHLEFLSLSSNGLQGTISSIGLEN 247
                     N TSL  LDLS N FN     W+    +L  L LS  G Q  I SI  +N
Sbjct: 229 LDQIPPLPTPNFTSLVVLDLSRNSFNCLMPRWVFSLKNLVSLHLSFCGFQSPIPSIS-QN 287

Query: 248 LTSIKTIDLSLNFELGGPIPTSFVRLCELTSIDVSDVKLSQDLSQVLDILSACGASALES 307
           +TS++ IDLS N     PIP   +   ++  + +   +L+  L + +  ++      L  
Sbjct: 288 ITSLREIDLSFNSISLDPIP-KLLFTQKILELSLESNQLTGQLPRSIQNMTGLTTLNLGG 346

Query: 308 LVFSSS-------------------QISGHLTSQLGQFKSLRTLSLDDNCISGPLPPALG 348
             F+S+                    + G ++S +G  KSLR   L  N ISGP+P +LG
Sbjct: 347 NEFNSTIPEWLYSLNNLESLLLFGNALRGEISSSIGNLKSLRHFDLSSNSISGPIPMSLG 406

Query: 349 DLSSLTRLDLSRNMLNGSIPLSLGKISHLEYLDLSNNKMNGTLSEIHFVNLTKLTWFSAS 408
           +LSSL +L +S N  NG+    +G++  L  LD+S N + G +SEI F NL KL  F A 
Sbjct: 407 NLSSLEKLYISENHFNGTFTEVIGQLKMLTDLDISYNSLEGVVSEISFSNLIKLKHFVAK 466

Query: 409 GNSLILQVNPNWVPPFQLKTLLLMSCHLGPQFPSWLHSQKNLSVLDISNARISDTIPRWF 468
           GNS  L+ + +WVPPFQL+ L L S HLGP++P WL +Q  L  L +S   IS TIP WF
Sbjct: 467 GNSFTLKTSRDWVPPFQLEILKLDSWHLGPEWPMWLRTQTQLKELSLSGTGISSTIPTWF 526

Query: 469 WNSIF----------QLSG-------------------------IIPESF-------KNF 486
           WN  F          QL G                         I+P S         +F
Sbjct: 527 WNLTFHVQYLNLSHNQLYGQIQNIVAGPSSAVDLSSNQFTGALPIVPTSLMWLDLSNSSF 586

Query: 487 S---------------NLEVLNLGDNEFVGKIP-TWMGEGFTSLLILILRSNKFDGFLPI 530
           S                L +L LG+N   GK+P  WM   + SL  L L +N   G +P+
Sbjct: 587 SGSVFHFFCDRPDEPKQLGILRLGNNFLTGKVPDCWM--SWPSLAFLNLENNNLTGNVPM 644

Query: 531 QLCRLTSLQILDVANNSLSGTMPGCVNNFSAMATIDSSHQSNAMS---YFEVTAYDCEVL 587
            +  L  L+ L + NN L G +P  + N ++++ +D S    + S   +   +     VL
Sbjct: 645 SMGYLDWLESLHLRNNHLYGELPHSLQNCTSLSVVDLSENGFSGSIPIWIGKSLSGLNVL 704

Query: 588 EDASIVMKGSMVEYNSILNLVRIIDVSKNNFSGEIP------------------------ 623
              S   +G +      L  ++I+D++ N  SG IP                        
Sbjct: 705 NLRSNKFEGDIPNEVCYLKSLQILDLAHNELSGMIPRCFHNLSAMANFSQSFSPTSFWGM 764

Query: 624 ---------------MELTYLRGL---QSLNLSHNIFTGQIPENIGNLISIESLDFSTN- 664
                          ME+ Y + L   + ++LS N   G+IPE +  L++++ L+ S N 
Sbjct: 765 VASGLTENAILVTKGMEMEYTKILGFVKGMDLSCNFMYGEIPEELTGLLALQYLNLSNNR 824

Query: 665 -----------------------QLSSKISQSMSSLSFLNHLNVSNNLLTGKIPSSTQLQ 701
                                  QL  +I  SM+ L+FL+HLN+S N LTG+IP STQLQ
Sbjct: 825 FTGRIPSKIGSMAQLESLDFSMNQLDGEIPPSMTILTFLSHLNLSYNNLTGRIPESTQLQ 884

Query: 702 SFDASCFVGNNLCGPPL-PSCTENNARAP----KDPNGNAEQDEDEVDWLLYVSIAVGFV 756
           S D S FVGN LCG PL  +C+EN    P     D  G     EDE  W  YVS+ VGF 
Sbjct: 885 SLDQSSFVGNELCGAPLNKNCSENGVIPPPTVEHDGGGGYSLVEDE--W-FYVSLGVGFF 941

Query: 757 VGFWCFIGPLLLNRGWRYKYCRFLD 781
            GFW  +G LL+N  W     + L+
Sbjct: 942 TGFWIVLGSLLVNMPWSILLSQLLN 966

Source: Malus baccata

Species: Malus baccata

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	794
TAIR|locus:2180587	811	RLP52 "receptor like protein 5	0.799	0.782	0.289	3.9e-60
TAIR|locus:2825389	784	RLP11 "AT1G71390" [Arabidopsis	0.887	0.899	0.280	4.5e-59
TAIR|locus:2182870	1192	EMS1 "EXCESS MICROSPOROCYTES1"	0.840	0.559	0.307	1.3e-57
TAIR|locus:2074633	943	RLP35 "AT3G11080" [Arabidopsis	0.813	0.685	0.290	1.6e-57
TAIR|locus:2044767	905	AT2G34930 "AT2G34930" [Arabido	0.765	0.671	0.295	1.2e-56
TAIR|locus:2122239	1136	AT4G36180 [Arabidopsis thalian	0.838	0.586	0.294	1.4e-56
TAIR|locus:2078102	875	RLP33 "receptor like protein 3	0.811	0.736	0.297	1.4e-56
TAIR|locus:2119430	741	RLP47 "receptor like protein 4	0.880	0.943	0.277	2e-56
TAIR|locus:2170483	1173	FLS2 "FLAGELLIN-SENSITIVE 2" [	0.750	0.508	0.300	2.5e-56
TAIR|locus:2055772	983	RLP19 "receptor like protein 1	0.836	0.675	0.266	1.5e-55

TAIR|locus:2180587 RLP52 "receptor like protein 52" [Arabidopsis thaliana (taxid:3702)]

 Score = 616 (221.9 bits), Expect = 3.9e-60, P = 3.9e-60
 Identities = 201/694 (28%), Positives = 325/694 (46%)

Query:    96 EYEDYMRSMLSGNVNPSLVDLK-HLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEF 154
             +Y D  +++ +G++   +  L   L +LDL+ N F G  IPK +G +  L+ LNL  +E+
Sbjct:   114 QYLDLSQNLFNGSLPDDINRLAPKLKYLDLAANSFAG-DIPKNIGRISKLKVLNLYMSEY 172

Query:   155 AGIIPHQLGNLSNLRCLDLSWS----------EYA-LQVHSFSWLS-----GQIPNRL-G 197
              G  P ++G+LS L  L L+ +          E+  L+   + WL      G+I   +  
Sbjct:   173 DGTFPSEIGDLSELEELQLALNDKFTPVKLPTEFGKLKKLKYMWLEEMNLIGEISAVVFE 232

Query:   198 NLTSLRHLDLSANKFNSTTAGWLSKFNHLEFLSLSSNGLQGTI-SSIGLENLTSIKTIDL 256
             N+T L+H+DLS N         L    +L  L L +N L G I  SI  +NL  +   DL
Sbjct:   233 NMTDLKHVDLSVNNLTGRIPDVLFGLKNLTELYLFANDLTGEIPKSISAKNLVHL---DL 289

Query:   257 SLNFELGGPIPTSFVRLCELTSIDVSDVKLSQDLSQVLDILSACGASALESLVFSSSQIS 316
             S N  L G IP S   L  L  + +   +L+ ++ + +  L       L+ L   +++++
Sbjct:   290 SAN-NLNGSIPESIGNLTNLELLYLFVNELTGEIPRAIGKLPE-----LKELKLFTNKLT 343

Query:   317 GHLTSQLGQFKSLRTLSLDDNCISGPLPPAXXXXXXXXXXXXXXNMLNGSIPLSLGKISH 376
             G + +++G    L    + +N ++G LP                N L G IP SLG    
Sbjct:   344 GEIPAEIGFISKLERFEVSENQLTGKLPENLCHGGKLQSVIVYSNNLTGEIPESLGDCET 403

Query:   377 LEYLDLSNNKMNGTLSEIHFVNLTKLTWFSASGNSLILQVNPNWVPPFQLKTLLLMSCH- 435
             L  + L NN  +G+++     N T+      S N+   ++ P+++       LL +S + 
Sbjct:   404 LSSVLLQNNGFSGSVT---ISNNTR------SNNNFTGKI-PSFICELHSLILLDLSTNK 453

Query:   436 LGPQFPSWLHSQKNLSVLDISNARISDTIPRWFWNSIF-------QLSGIIPESFKNFSN 488
                  P  + +   L VL++    +S +IP     S+        QL+G +P S    S+
Sbjct:   454 FNGSIPRCIANLSTLEVLNLGKNHLSGSIPENISTSVKSIDIGHNQLAGKLPRSLVRISS 513

Query:   489 LEVLNLGDNEFVGKIPTWMGEGFTSLLILILRSNKFDGFLPIQLCRLTSLQILDVANNSL 548
             LEVLN+  N+     P W+ +    L +L+LRSN F G   I     + L+I+D++ N  
Sbjct:   514 LEVLNVESNKINDTFPFWL-DSMQQLQVLVLRSNAFHG--SINQNGFSKLRIIDISGNHF 570

Query:   549 SGTMP-GCVNNFSAMATIDS-SHQSNAMSYFEVTAYDCEVLEDASIVMKGSMVEYNSILN 606
             +GT+P     N++AM ++     Q    +Y     Y   ++    +++KG  +E   ILN
Sbjct:   571 NGTLPLDFFVNWTAMFSLGKIEDQYMGTNYMRTNYYSDSIV----VMIKGIALEMVRILN 626

Query:   607 LVRIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQIPENIGNLISIESLDFSTNQX 666
                 ID S N F GEIP  +  L+ L  LNLS+N FTG IP ++GNLI +ESLD S N+ 
Sbjct:   627 TFTTIDFSGNKFEGEIPRSVGLLKELHVLNLSNNGFTGHIPSSMGNLIELESLDVSQNKL 686

Query:   667 XXXXXXXXXXXXXXNHLNVSNNLLTGKIPSSTQLQSFDASCFVGN-NLCGPPLPS-CTEN 724
                            ++N S N   G +P  TQ Q+   S F  N  L G  L   C + 
Sbjct:   687 SGEIPPELGKLSYLAYMNFSQNQFVGLVPGGTQFQTQPCSSFADNPRLFGLSLERVCVDI 746

Query:   725 NARAPKDPNGNAEQDEDEVDWLLYVSIAVGFVVG 758
             + + P+      E +EDE + + + + A+G + G
Sbjct:   747 HKKTPQQSE-MPEPEEDEEEVMNWTAAAIGSIPG 779

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC;RCA

GO:0010200 "response to chitin" evidence=IEP

GO:0050832 "defense response to fungus" evidence=IMP

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2825389 RLP11 "AT1G71390" [Arabidopsis thaliana (taxid:3702)]

 Score = 606 (218.4 bits), Expect = 4.5e-59, P = 4.5e-59
 Identities = 217/774 (28%), Positives = 327/774 (42%)

Query:    17 FAISSFCSGNSDVGCTDSEREALLKLKQDLKDPSNRLGSWVVDGDCCKWAEVVCSNLTGH 76
             F I S  S +    C   +R+ LLK + +     ++   W    DCC W  V C + +G 
Sbjct:    19 FLIHSLASPSLHF-CRHDQRDGLLKFRDEFPIFESKSSPWNKTTDCCSWDGVTCDDKSGQ 77

Query:    77 VLQLSLRNPFRNDLRYATTEYEDYMRSMLSGNVNPSLVDLKHLTHLDLSGNDFQGIRIPK 136
             V+ L LR+   N                 S   N SL  L++L HLDLSG +  G  IP 
Sbjct:    78 VISLDLRSTLLNS----------------SLKTNSSLFRLQYLRHLDLSGCNLHG-EIPS 120

Query:   137 YLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRCLDLSWSEYALQVHS----FS------ 186
              LG+L  L  L LS     G IP+ +GNL  LR L L  ++   ++ S     S      
Sbjct:   121 SLGNLSRLENLELSSNRLVGEIPYSIGNLKQLRNLSLGDNDLIGEIPSSLGNLSLLLDLD 180

Query:   187 -W---LSGQIPNRLGNLTSLRHLDLSANKFNSTTAGWLSKFNHLEFLSLSSNGLQGTISS 242
              W   L G++P  +GNL  LR + L  N  + +     +    L    +  N      S 
Sbjct:   181 LWNNSLVGEVPASIGNLNELRVMSLDRNSLSGSIPISFTNLTKLSEFRIFFNNFTSLPSD 240

Query:   243 I-GLENLTSIKTIDLSLNFELGGPIPTSFVRLCELTSIDVSDVKLSQDLSQVLDILSACG 301
             + G  NL    T D+S N    G  P     +  L  + +         S  ++  +   
Sbjct:   241 LSGFHNLV---TFDISAN-SFSGHFPKFLFSIPSLAWVSMD----RNQFSGPIEFANISS 292

Query:   302 ASALESLVFSSSQISGHLTSQLGQFKSLRTLSLDDNCISGPLPPAXXXXXXXXXXXXXXN 361
             +S L++L+ + +++ G +   + +F +L  L +  N ISGP+P +              N
Sbjct:   293 SSKLQNLILTRNKLDGSIPESISKFLNLVLLDVAHNNISGPVPRSMSKLVSLRIFGFSNN 352

Query:   362 MLNGSIPLSLGKISHLEYLDLSNNKMNGTLSEIHFVNLTKLTWFSASGNSLILQVNPNWV 421
              L G +P  L ++S      LS+N  + +  +I+    T +     S NS      P W+
Sbjct:   353 KLEGEVPSWLWRLSSTM---LSHNSFS-SFEKIYSKE-TMIQVLDLSFNSF-RGTFPVWI 406

Query:   422 PPFQLKTLLLMSCHL-GPQFPSWLHSQKNLSVLDISNARISDTIPRWFWNSIF------- 473
                +    L +S +L     P  L +  NL+ L + N + S T+P  F N+         
Sbjct:   407 CKLKGLHFLDLSNNLFNGSIPLCLRNF-NLTGLILGNNKFSGTLPDIFANNTNLQSLDVS 465

Query:   474 --QLSGIIPESFKNFSNLEVLNLGDNEFVGKIPTWMGEGFTSLLILILRSNKFDGFL--P 529
               QL G  P+S  N   L  +N+  N+     P+W+G    SL +LILRSN F G L  P
Sbjct:   466 GNQLEGKFPKSLINCKGLHFVNVESNKIKDTFPSWLGS-LPSLQVLILRSNDFYGPLYHP 524

Query:   530 IQLCRLTSLQILDVANNSLSGTMPGCVNNFSAMAT-IDSSHQSNAMSYFE-VTAYDCEVL 587
                     L+I+D+++N  SG +P   N FS+    I   H S    Y E +  Y   + 
Sbjct:   525 SMSIGFQGLRIIDISHNGFSGVLPP--NFFSSWREMITLVHGS--YEYIEDIQNYSL-IY 579

Query:   588 EDASIVMKGSMVEYNSILNLVRIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQIP 647
                 +V KG  + +  I    R ID S+N   GEIP  +  L  L+ LNLS N FT  IP
Sbjct:   580 RSMEMVNKGVEMSFERIRQDFRAIDFSENRIYGEIPESIGCLEELRLLNLSGNAFTSDIP 639

Query:   648 ENIGNLISIESLDFSTNQXXXXXXXXXXXXXXXNHLNVSNNLLTGKIPSSTQLQSFDASC 707
                 NL  +E+LD S N+               +++N S+N L G +P  TQ Q    S 
Sbjct:   640 RVWENLTKLETLDLSRNKLSGQIPQDLGKLSFLSYMNFSHNRLQGPVPRGTQFQRQRCSS 699

Query:   708 FVGNNLCGPPLPSCTENNARAPKDPNGNAEQDEDEVDWLLYVSIAVGFVVGFWC 761
             F+ N+        C E +   P         DE+E     +V+ A+ +  G +C
Sbjct:   700 FLDNHRLYGLEDICEETHVPNPTSQPSEDLLDEEE-KMFNWVAAAIAYGPGVFC 752

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0007154 "cell communication" evidence=RCA

GO:0009409 "response to cold" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

TAIR|locus:2182870 EMS1 "EXCESS MICROSPOROCYTES1" [Arabidopsis thaliana (taxid:3702)]

 Score = 602 (217.0 bits), Expect = 1.3e-57, P = 1.3e-57
 Identities = 230/749 (30%), Positives = 343/749 (45%)

Query:    11 LVFLELFAISSFCSGNSDVGCTDSEREALLKLKQDLKDPSNRLGSWVVDGDC--CKWAEV 68
             L  L LF   SF S  S +    SE  +L+  K+ L++PS  L SW V      C W  V
Sbjct:     4 LTALFLFLFFSFSS--SAIVDLSSETTSLISFKRSLENPS-LLSSWNVSSSASHCDWVGV 60

Query:    69 VCSNLTGHVLQLSLRN-PFRNDLRYATTEYEDYMRSMLSGN-----VNPSLVDLKHLTHL 122
              C  L G V  LSL +   R  +    +  ++     L+GN     + P + +LKHL  L
Sbjct:    61 TC--LLGRVNSLSLPSLSLRGQIPKEISSLKNLRELCLAGNQFSGKIPPEIWNLKHLQTL 118

Query:   123 DLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLG-NLSNLRCLDLSWS----E 177
             DLSGN   G+ +P+ L  L  L YL+LS   F+G +P     +L  L  LD+S +    E
Sbjct:   119 DLSGNSLTGL-LPRLLSELPQLLYLDLSDNHFSGSLPPSFFISLPALSSLDVSNNSLSGE 177

Query:   178 YALQVHSFSWLS----------GQIPNRLGNLTSLRHLDLSANKFNSTTAGWLSKFNHLE 227
                ++   S LS          GQIP+ +GN++ L++    +  FN      +SK  HL 
Sbjct:   178 IPPEIGKLSNLSNLYMGLNSFSGQIPSEIGNISLLKNFAAPSCFFNGPLPKEISKLKHLA 237

Query:   228 FLSLSSNGLQGTI-SSIG-LENLTSIKTIDLSLNFELGGPIPTSFVRLCELTSIDVSDVK 285
              L LS N L+ +I  S G L NL+ +  +      EL G IP        L S+ +S   
Sbjct:   238 KLDLSYNPLKCSIPKSFGELHNLSILNLVSA----ELIGLIPPELGNCKSLKSLMLSFNS 293

Query:   286 LSQDLSQVLDILSACGASALESLVFSS--SQISGHLTSQLGQFKSLRTLSLDDNCISGPL 343
             LS  L   L++      S +  L FS+  +Q+SG L S +G++K L +L L +N  SG +
Sbjct:   294 LSGPLP--LEL------SEIPLLTFSAERNQLSGSLPSWMGKWKVLDSLLLANNRFSGEI 345

Query:   344 PPAXXXXXXXXXXXXXXNMLNGSIPLSLGKISHLEYLDLSNNKMNGTLSEIHFVNLTKLT 403
             P                N+L+GSIP  L     LE +DLS N ++GT+ E+ F   + L 
Sbjct:   346 PHEIEDCPMLKHLSLASNLLSGSIPRELCGSGSLEAIDLSGNLLSGTIEEV-FDGCSSLG 404

Query:   404 WFSASGNSLILQVNPN-WVPPFQLKTLLLMSCHLGPQFPSWLHSQKNLSVLDISNARISD 462
                 + N +   +  + W  P  L  L L S +   + P  L    NL     S      
Sbjct:   405 ELLLTNNQINGSIPEDLWKLP--LMALDLDSNNFTGEIPKSLWKSTNLMEFTAS------ 456

Query:   463 TIPRWFWNSIFQLSGIIPESFKNFSNLEVLNLGDNEFVGKIPTWMGEGFTSLLILILRSN 522
                   +N   +L G +P    N ++L+ L L DN+  G+IP  +G+  TSL +L L +N
Sbjct:   457 ------YN---RLEGYLPAEIGNAASLKRLVLSDNQLTGEIPREIGK-LTSLSVLNLNAN 506

Query:   523 KFDGFLPIQLCRLTSLQILDVANNSLSGTMPGCVNNFSAMATIDSSHQ-------SNAMS 575
              F G +P++L   TSL  LD+ +N+L G +P  +   + +  +  S+        S   +
Sbjct:   507 MFQGKIPVELGDCTSLTTLDLGSNNLQGQIPDKITALAQLQCLVLSYNNLSGSIPSKPSA 566

Query:   576 YF-EVTAYDCEVLEDASIV------MKGSMVE-YNSILNLVRIIDVSKNNFSGEIPMELT 627
             YF ++   D   L+   I       + G + E     L LV I  +S N+ SGEIP  L+
Sbjct:   567 YFHQIEMPDLSFLQHHGIFDLSYNRLSGPIPEELGECLVLVEI-SLSNNHLSGEIPASLS 625

Query:   628 YLRGLQSLNLSHNIFTGQIPENIGNLISIESLDFSTNQXXXXXXXXXXXXXXXNHLNVSN 687
              L  L  L+LS N  TG IP+ +GN + ++ L+ + NQ                 LN++ 
Sbjct:   626 RLTNLTILDLSGNALTGSIPKEMGNSLKLQGLNLANNQLNGHIPESFGLLGSLVKLNLTK 685

Query:   688 NLLTGKIPSST-QLQSFDASCFVGNNLCG 715
             N L G +P+S   L+         NNL G
Sbjct:   686 NKLDGPVPASLGNLKELTHMDLSFNNLSG 714

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0009556 "microsporogenesis" evidence=IMP

GO:0010234 "tapetal cell fate specification" evidence=IMP

GO:0016020 "membrane" evidence=IDA

GO:0019199 "transmembrane receptor protein kinase activity" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2074633 RLP35 "AT3G11080" [Arabidopsis thaliana (taxid:3702)]

 Score = 597 (215.2 bits), Expect = 1.6e-57, P = 1.6e-57
 Identities = 206/708 (29%), Positives = 327/708 (46%)

Query:    90 LRYATTEYEDYMRSMLSGNVNPSLVDLKHLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNL 149
             L Y    Y +++     G +  S  +L  L  L +  N   G  +P  L +L  L  L L
Sbjct:   247 LTYLYLSYNNFV-----GEIPSSFGNLNQLIVLQVDSNKLSG-NVPISLLNLTRLSALLL 300

Query:   150 SGAEFAGIIPHQLGNLSNLRCLDLSWSEYALQVHSFSWLSGQIPNRLGNLTSLRHLDLSA 209
             S  +F G IP+ +  LSNL  +D   S  A         +G +P+ L N+  L  LDLS 
Sbjct:   301 SHNQFTGTIPNNISLLSNL--MDFEASNNAF--------TGTLPSSLFNIPPLIRLDLSD 350

Query:   210 NKFNSTTA-GWLSKFNHLEFLSLSSNGLQGTISSIGLENLTSIKTIDLS-LNFELGGPIP 267
             N+ N T   G +S  ++L++L + SN   GTI    L    ++   DLS LN +     P
Sbjct:   351 NQLNGTLHFGNISSPSNLQYLIIGSNNFIGTIPR-SLSRFVNLTLFDLSHLNTQCR---P 406

Query:   268 TSFVRLCELTSIDVSDVKLSQDLSQVLDILSACGA-SALESLVFSSSQISGHLTSQLGQ- 325
               F     L S+D  D++LS   +  +D+         L SL  S + +S    S +   
Sbjct:   407 VDFSIFSHLKSLD--DLRLSYLTTTTIDLNDILPYFKTLRSLDISGNLVSATNKSSVSSD 464

Query:   326 --FKSLRTLSLDDNCISGPLPPAXXXXXXXXXXXXXXNMLNGSIPLSLGKISHLEYLDLS 383
                +S+++L L   C     P                N + G +P  L  + +L YL+LS
Sbjct:   465 PPSQSIQSLYLS-GCGITDFPEILRTQHELGFLDVSNNKIKGQVPGWLWTLPNLFYLNLS 523

Query:   384 NNKMNG--TLSEIHFVNLTK---LTWFSASGNSLILQVNPNWVPPFQ-LKTLLLMSCHLG 437
             NN      + S+ H ++  +   +    AS N+   ++ P+++   + L TL L   +  
Sbjct:   524 NNTFISFESSSKKHGLSSVRKPSMIHLFASNNNFTGKI-PSFICGLRSLNTLDLSENNYN 582

Query:   438 PQFPSWLHSQKN-LSVLDISNARISDTIPRWFWNSIFQLS-------GIIPESFKNFSNL 489
                P  +   K+ L VL++    +S  +P+  + S+  L        G +P S   FSNL
Sbjct:   583 GSIPRCMEKLKSTLFVLNLRQNNLSGGLPKHIFESLRSLDVGHNLLVGKLPRSLIRFSNL 642

Query:   490 EVLNLGDNEFVGKIPTWMGEGFTSLLILILRSNKFDGFLPIQLCRLTSLQILDVANNSLS 549
             EVLN+  N      P W+    + L +L+LRSN F G  PI       L+I+D+++N  +
Sbjct:   643 EVLNVESNRINDTFPFWLSS-LSKLQVLVLRSNAFHG--PIHEATFPELRIIDISHNHFN 699

Query:   550 GTMPG-CVNNFSAMATIDSSHQSNAMSYFEVTAYDCEVLEDASIVM-KGSMVEYNSILNL 607
             GT+P      +SAM+++  +   +   Y     Y     +D+ ++M KG  +E   IL +
Sbjct:   700 GTLPTEYFVKWSAMSSLGKNEDQSNEKYMGSGLY----YQDSMVLMNKGLAMELVRILTI 755

Query:   608 VRIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQIPENIGNLISIESLDFSTNQXX 667
                +D S N F GEIP  +  L+ L  LNLS+N F G IP ++GNL ++ESLD S N+  
Sbjct:   756 YTALDFSGNKFEGEIPKSIGLLKELLVLNLSNNAFGGHIPSSMGNLTALESLDVSQNKLT 815

Query:   668 XXXXXXXXXXXXXNHLNVSNNLLTGKIPSSTQLQSFDASCFVGN-NLCGPPLPS-CTENN 725
                           ++N S+N L G +P  TQ +  + S F  N  L GP L   C + +
Sbjct:   816 GEIPQELGDLSFLAYMNFSHNQLAGLVPGGTQFRRQNCSAFENNLGLFGPSLDEVCRDKH 875

Query:   726 ARAPK--DPNGNAEQDEDEVDWLLYVSIAVGFVVG--FWCFIGPLLLN 769
               A +  +     E+DE+E+ W   ++ A+GF+ G  F   IG +L++
Sbjct:   876 TPASQQNETTETEEEDEEEISW---IAAAIGFIPGIVFGLTIGYILVS 920

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2044767 AT2G34930 "AT2G34930" [Arabidopsis thaliana (taxid:3702)]

 Score = 588 (212.0 bits), Expect = 1.2e-56, P = 1.2e-56
 Identities = 197/667 (29%), Positives = 303/667 (45%)

Query:    97 YEDYMRSMLSGNVNPSLVDLKHLTHLDLSGNDF--QG---IRIP--KYLGSLKN-LRYLN 148
             Y +   S  SG +  SL +L  L  LDL    F   G   +R    ++L SL + L+YLN
Sbjct:   141 YLNLSSSSFSGEIPTSLGNLSKLESLDLYAESFGDSGTLSLRASNLRWLSSLSSSLKYLN 200

Query:   149 LSGAEFAGIIPHQLGNLSNLRCLDLSWSEYALQVHSFSWLSGQIPNRLGN---LTSLRHL 205
             +     +G     L + S +  L         ++H F+     +P  L +   L  L  L
Sbjct:   201 MGYVNLSGAGETWLQDFSRISALK--------ELHLFNSELKNLPPTLSSSADLKLLEVL 252

Query:   206 DLSANKFNSTTAGWLSKFNHLEFLSLSSNGLQGTISSIGLENLTSIKTIDLSLNFELGGP 265
             DLS N  NS    WL    +L  L L  + LQG+I + G +NL  ++T+DLS N  L G 
Sbjct:   253 DLSENSLNSPIPNWLFGLTNLRKLFLRWDFLQGSIPT-GFKNLKLLETLDLSNNLALQGE 311

Query:   266 IPTSFVRLCELTSIDVSDVKLSQDLSQVLDILSACGASALESLVFSSSQISGHLTSQLGQ 325
             IP+    L +L  +D+S  +L+  +   LD  S    ++L  L  SS++++G L   LG 
Sbjct:   312 IPSVLGDLPQLKFLDLSANELNGQIHGFLDAFSRNKGNSLVFLDLSSNKLAGTLPESLGS 371

Query:   326 FKSLRTLSLDDNCISGPLPPAXXXXXXXXXXXXXXNMLNGSIPLSLGKISHLEYLDLSNN 385
              ++L+TL L  N  +G +P +              N +NG+I  SLG+++ L  L+L  N
Sbjct:   372 LRNLQTLDLSSNSFTGSVPSSIGNMASLKKLDLSNNAMNGTIAESLGQLAELVDLNLMAN 431

Query:   386 KMNGTLSEIHFVNLTKLTWFSASGN---SLILQVNPNWVPPFQLKTLLLMSCHLGPQFPS 442
                G L + HFVNL  L     +     SL+ ++   W+PPF+L+ + + +C +G  FP 
Sbjct:   432 TWGGVLQKSHFVNLRSLKSIRLTTEPYRSLVFKLPSTWIPPFRLELIQIENCRIG-LFPM 490

Query:   443 WLHSQKNLSVLDISNARISDTIP-RWFWNSIFQLSGIIPESFKNFSNLEVLNLGDNEFVG 501
             WL  Q  L+ + + N  I DTIP  WF       SGI        S +  L L +N   G
Sbjct:   491 WLQVQTKLNFVTLRNTGIEDTIPDSWF-------SGIS-------SKVTYLILANNRIKG 536

Query:   502 KIPTWMGEGFTSLLILILRSNKFDGFLPIQLCRLTSLQILDVANNSLSGTMPGCVN---- 557
             ++P  +   F  L  + L SN F+G  P+     T L++ +   N+ SG++P  ++    
Sbjct:   537 RLPQKLA--FPKLNTIDLSSNNFEGTFPLWSTNATELRLYE---NNFSGSLPQNIDVLMP 591

Query:   558 NFSAMATIDSSHQSNAMSYF-EVTAYDCEVLEDASIVMKGSMVEYNSILNLVRIIDVSKN 616
                 +    +S   N  S   EV+    ++L        GS  +      ++  IDVS+N
Sbjct:   592 RMEKIYLFSNSFTGNIPSSLCEVSGL--QILSLRKNHFSGSFPKCWHRQFMLWGIDVSEN 649

Query:   617 NFSGEIPMELTYLRGLQSLNLSHNIFTGQIPENIGNLISIESLDFSTNQXXXXXXXXXXX 676
             N SGEIP  L  L  L  L L+ N   G+IPE++ N   + ++D   N+           
Sbjct:   650 NLSGEIPESLGMLPSLSVLLLNQNSLEGKIPESLRNCSGLTNIDLGGNKLTGKLPSWVGK 709

Query:   677 XXXXNHLNVSNNLLTGKIPSST----QLQSFDASCFVGNNLCGPPLPSCTENNARAPKDP 732
                   L + +N  TG+IP        L+  D S   GN + GP +P C  N     +  
Sbjct:   710 LSSLFMLRLQSNSFTGQIPDDLCNVPNLRILDLS---GNKISGP-IPKCISNLTAIARGT 765

Query:   733 NGNAEQD 739
             N    Q+
Sbjct:   766 NNEVFQN 772

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0005618 "cell wall" evidence=IDA

GO:0050832 "defense response to fungus" evidence=IEP;IMP

TAIR|locus:2122239 AT4G36180 [Arabidopsis thaliana (taxid:3702)]

 Score = 592 (213.5 bits), Expect = 1.4e-56, P = 1.4e-56
 Identities = 212/719 (29%), Positives = 326/719 (45%)

Query:    79 QLSLR-NPFRN----DLRYATTEYEDYMR-SMLSGNVNPSLVDLKHLTHLDLSGNDFQGI 132
             +LSLR N F       L Y T     +++ + LSG + P++ +L  L   +++GN   G 
Sbjct:    96 KLSLRSNSFNGTIPTSLAYCTRLLSVFLQYNSLSGKLPPAMRNLTSLEVFNVAGNRLSG- 154

Query:   133 RIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRCLDLSWSEYALQVHSFSWLSGQI 192
              IP  +G   +L++L++S   F+G IP  L NL+ L+ L+LS+++          L+G+I
Sbjct:   155 EIP--VGLPSSLQFLDISSNTFSGQIPSGLANLTQLQLLNLSYNQ----------LTGEI 202

Query:   193 PNRLGNLTSLRHLDLSANKFNSTTAGWLSKFNHLEFLSLSSNGLQGTISSIGLENLTSIK 252
             P  LGNL SL++L L  N    T    +S  + L  LS S N + G I +     L  ++
Sbjct:   203 PASLGNLQSLQYLWLDFNLLQGTLPSAISNCSSLVHLSASENEIGGVIPA-AYGALPKLE 261

Query:   253 TIDLSLNFELGGPIPTSFVRLCELTSIDVSDVKLSQDLSQVLDILSACGASALESLVFSS 312
              + LS N    G +P S    C  TS+ +  +  +     V    +A   + L+ L    
Sbjct:   262 VLSLSNN-NFSGTVPFSL--FCN-TSLTIVQLGFNAFSDIVRPETTANCRTGLQVLDLQE 317

Query:   313 SQISGHLTSQLGQFKSLRTLSLDDNCISGPLPPAXXXXXXXXXXXXXXNMLNGSIPLSLG 372
             ++ISG     L    SL+ L +  N  SG +PP               N L G IP+ + 
Sbjct:   318 NRISGRFPLWLTNILSLKNLDVSGNLFSGEIPPDIGNLKRLEELKLANNSLTGEIPVEIK 377

Query:   373 KISHLEYLDLSNNKMNGTLSEIHFVNLTK-LTWFSASGNSLILQVNPNWVPPFQLKTLLL 431
             +   L+ LD   N + G + E  F+   K L   S   NS    V  + V   QL+ L L
Sbjct:   378 QCGSLDVLDFEGNSLKGQIPE--FLGYMKALKVLSLGRNSFSGYVPSSMVNLQQLERLNL 435

Query:   432 MSCHLGPQFPSWLHSQKNLSVLDISNARISDTIPRWFWN----SIFQLSGI-----IPES 482
                +L   FP  L +  +LS LD+S  R S  +P    N    S   LSG      IP S
Sbjct:   436 GENNLNGSFPVELMALTSLSELDLSGNRFSGAVPVSISNLSNLSFLNLSGNGFSGEIPAS 495

Query:   483 FKNFSNLEVLNLGDNEFVGKIPTWMGEGFTSLLILILRSNKFDGFLPIQLCRLTSLQILD 542
               N   L  L+L      G++P  +  G  ++ ++ L+ N F G +P     L SL+ ++
Sbjct:   496 VGNLFKLTALDLSKQNMSGEVPVELS-GLPNVQVIALQGNNFSGVVPEGFSSLVSLRYVN 554

Query:   543 VANNSLSGTMPGCVNNFSAMATIDSS--HQSNAMSYFEVTAYDCEVLEDASIVMKGSMVE 600
             +++NS SG +P        + ++  S  H S ++          EVLE  S  + G +  
Sbjct:   555 LSSNSFSGEIPQTFGFLRLLVSLSLSDNHISGSIPPEIGNCSALEVLELRSNRLMGHIPA 614

Query:   601 YNSILNLVRIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQIPENIGNLISIESLD 660
               S L  ++++D+ +NN SGEIP E++    L SL+L HN  +G IP +   L ++  +D
Sbjct:   615 DLSRLPRLKVLDLGQNNLSGEIPPEISQSSSLNSLSLDHNHLSGVIPGSFSGLSNLTKMD 674

Query:   661 FSTNQXXXXX-XXXXXXXXXXNHLNVSNNLLTGKIPSSTQLQSFDASCFVGNN-LCGPPL 718
              S N                  + NVS+N L G+IP+S   +  + S F GN  LCG PL
Sbjct:   675 LSVNNLTGEIPASLALISSNLVYFNVSSNNLKGEIPASLGSRINNTSEFSGNTELCGKPL 734

Query:   719 PSCTENNARAPKDPNGNAEQDEDEVDWLLYVSIAVG-FVVG-FWCFIGPLLLNRGWRYK 775
                   N R         ++    +  L+ V  A+G F++  F CF    LL   WR K
Sbjct:   735 ------NRRCESSTAEGKKKKRKMI--LMIVMAAIGAFLLSLFCCFYVYTLLK--WRKK 783

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0000226 "microtubule cytoskeleton organization" evidence=RCA

GO:0000911 "cytokinesis by cell plate formation" evidence=RCA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0006260 "DNA replication" evidence=RCA

GO:0006306 "DNA methylation" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0008283 "cell proliferation" evidence=RCA

GO:0009855 "determination of bilateral symmetry" evidence=RCA

GO:0010014 "meristem initiation" evidence=RCA

GO:0010073 "meristem maintenance" evidence=RCA

GO:0010075 "regulation of meristem growth" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0030244 "cellulose biosynthetic process" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

GO:0051567 "histone H3-K9 methylation" evidence=RCA

TAIR|locus:2078102 RLP33 "receptor like protein 33" [Arabidopsis thaliana (taxid:3702)]

 Score = 586 (211.3 bits), Expect = 1.4e-56, P = 1.4e-56
 Identities = 211/710 (29%), Positives = 329/710 (46%)

Query:   107 GNVNPSLVDLKHLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLS 166
             G +  SL +L +LT LDLS N+F G  IP   GSL  L  L L   + +G +P ++ NL+
Sbjct:   173 GEIPSSLGNLSYLTFLDLSTNNFVG-EIPSSFGSLNQLSILRLDNNKLSGNLPLEVINLT 231

Query:   167 NLRCLDLSWSEY---------ALQV-HSFSWLS----GQIPNRLGNLTSLRHLDLSANKF 212
              L  + LS +++         +L +  SFS       G IP+ L  + S+  + L  N+ 
Sbjct:   232 KLSEISLSHNQFTGTLPPNITSLSILESFSASGNNFVGTIPSSLFTIPSITLIFLDNNQL 291

Query:   213 NSTTA-GWLSKFNHLEFLSLSSNGLQGTISSIGLENLTSIKTIDLSLNFELGGPIPT--- 268
             + T   G +S  ++L  L L  N L+G I +  +  L +++T+DLS +F + G +     
Sbjct:   292 SGTLEFGNISSPSNLLVLQLGGNNLRGPIPT-SISRLVNLRTLDLS-HFNIQGQVDFNIF 349

Query:   269 SFVRLCELTSIDVSDVKLSQDLSQVLD---ILSACGASALESLVFSSSQISGHLTSQLGQ 325
             S ++L     +  S+   + DL+ VL    +L +   S    LV + S +S      LG 
Sbjct:   350 SHLKLLGNLYLSHSNTTTTIDLNAVLSCFKMLISLDLSGNHVLVTNKSSVSD---PPLGL 406

Query:   326 FKSLRTLSLDDNCISGPLPPAXXXXXXXXXXXXXXNMLNGSIPLSLGKISHLEYLDLSNN 385
               SL  LS    C     P                N + G +P  L  +  LEY+ +SNN
Sbjct:   407 IGSLN-LS---GCGITEFPDILRTQRQMRTLDISNNKIKGQVPSWL--LLQLEYMHISNN 460

Query:   386 KMNG----TLSEIHFVNLTKLTWFSASGNSLILQVNPNWVPPFQLKTLL-LMSCHLGPQF 440
                G    T  E   V    +  F  S N+   ++ P+++   +   +L L + +     
Sbjct:   461 NFIGFERSTKLEKTVVPKPSMKHFFGSNNNFSGKI-PSFICSLRSLIILDLSNNNFSGAI 519

Query:   441 PSWLHSQKN-LSVLDISNARISDTIPRWFWNSIF-------QLSGIIPESFKNFSNLEVL 492
             P  +   K+ LS L++   R+S ++P+    S+        +L G +P S  +FS LEVL
Sbjct:   520 PPCVGKFKSTLSDLNLRRNRLSGSLPKTIIKSLRSLDVSHNELEGKLPRSLIHFSTLEVL 579

Query:   493 NLGDNEFVGKIPTWMGEGFTSLLILILRSNKFDGFLPIQLCRLTSLQILDVANNSLSGTM 552
             N+  N      P W+      L +L+LRSN F G   I   R   L+I+D++ N  +GT+
Sbjct:   580 NVESNRINDTFPFWLSS-LKKLQVLVLRSNAFHG--RIHKTRFPKLRIIDISRNHFNGTL 636

Query:   553 PG-CVNNFSAMATIDSSHQSNAMSYFEVTAYDCEVLEDASIVM-KGSMVEYNSILNLVRI 610
             P  C   ++ M +++ +       Y     Y      D+ ++M KG  +E   IL +   
Sbjct:   637 PSDCFVEWTGMHSLEKNEDRFNEKYMGSGYY-----HDSMVLMNKGLEMELVRILKIYTA 691

Query:   611 IDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQIPENIGNLISIESLDFSTNQXXXXX 670
             +D S N F GEIP  +  L+ L  LNLS N FTG IP ++GNL  +ESLD S N+     
Sbjct:   692 LDFSGNKFEGEIPRSIGLLKELHILNLSSNGFTGHIPSSMGNLRELESLDVSRNKLSGEI 751

Query:   671 XXXXXXXXXXNHLNVSNNLLTGKIPSSTQLQSFDASCFVGN-NLCGPPLPSCTENNARAP 729
                        ++N S+N L G++P  TQ ++  AS F  N  LCG PL  C       P
Sbjct:   752 PQELGNLSYLAYMNFSHNQLVGQVPGGTQFRTQSASSFEENLGLCGRPLEECRV--VHEP 809

Query:   730 KDPNGNAEQDEDEVDWLLYVSIAVGFVVGF--WCFIGPLLLNRG--WRYK 775
               P+G +E  E E   L +++ A+GF  G      IG ++L+    W +K
Sbjct:   810 T-PSGESETLESE-QVLSWIAAAIGFTPGIVLGLTIGHIVLSSKPRWFFK 857

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0009507 "chloroplast" evidence=IDA

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0006457 "protein folding" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009408 "response to heat" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

TAIR|locus:2119430 RLP47 "receptor like protein 47" [Arabidopsis thaliana (taxid:3702)]

 Score = 581 (209.6 bits), Expect = 2.0e-56, P = 2.0e-56
 Identities = 211/760 (27%), Positives = 343/760 (45%)

Query:    56 WVVDGDCCKWAEVVCSNLTGHVLQLSLRNPFRND-LRYATTEYE-DYMRSM------LSG 107
             W  + DCC W  V C   TG V++L L+    N  LR  ++ +   +++ +      LSG
Sbjct:     5 WRNNTDCCSWDGVSCDPKTGVVVELDLQYSHLNGPLRSNSSLFRLQHLQKLVLGSNHLSG 64

Query:   108 NVNPSLVDLKHLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSN 167
              +  S+ +LK L  L L   +  G +IP  LG+L  L +L+LS  +F    P  +GNL+ 
Sbjct:    65 ILPDSIGNLKRLKVLVLVNCNLFG-KIPSSLGNLSYLTHLDLSYNDFTSEGPDSMGNLNR 123

Query:   168 LRCLDLSWSEYALQVHSFSWLSGQIPNRLGNLTSLRHLDLSANKFNSTTAGWLSKFNHLE 227
             L  + L  S         + L G +P+ + +L+ L   D+S N F+ T    L     L 
Sbjct:   124 LTDMLLKLSSVTWIDLGDNQLKGMLPSNMSSLSKLEAFDISGNSFSGTIPSSLFMIPSLI 183

Query:   228 FLSLSSNGLQGTISSIGLENLTSIKTIDLSLNFELGGPIPTS-FVRLCELTSIDVSDV-- 284
              L L  N   G      + + ++++ +++  N      +  S F  L  L  +DVS +  
Sbjct:   184 LLHLGRNDFSGPFEIGNISSPSNLQLLNIGRNNFNPDIVDLSIFSPLLSLGYLDVSGINL 243

Query:   285 KLSQDLS-----QVLDILSACGAS----------ALESLVFSSSQISGHLTSQLGQFKSL 329
             K+S  +S     + L +LS C  S          +LE L  S++QI G +   L     L
Sbjct:   244 KISSTVSLPSPIEYLGLLS-CNISEFPKFLRNQTSLEYLDISANQIEGQVPEWLWSLPEL 302

Query:   330 RTLSLDDNCISGPLPPAXXXXXXXXXXXXXXNMLNGSIPLSLGKISHLEYLDLSNNKMNG 389
             R +++  N  +G   PA              +      P  L  +  + YL  SNN+ +G
Sbjct:   303 RYVNISHNSFNGFEGPADVIQGGRELLVLDISSNIFQDPFPLLPVVSMNYLFSSNNRFSG 362

Query:   390 TLSEIHFVNLTKLTWFSASGNSLILQVNPNWVPPFQLKTLLLMSCHLGPQFPSWLHSQKN 449
              + +     L  L     S N+    + P       L  L L + +L   FP    S  +
Sbjct:   363 EIPKT-ICELDNLRILVLSNNNFSGSI-PRCFENLHLYVLHLRNNNLSGIFPEEAISH-H 419

Query:   450 LSVLDISNARISDTIPRWFWNSIFQLSGIIPESFKNFSNLEVLNLGDNEFVGKIPTWMGE 509
             L   D+ +             ++F  SG +P+S  N S++E LN+ DN      P+W+ E
Sbjct:   420 LQSFDVGH-------------NLF--SGELPKSLINCSDIEFLNVEDNRINDTFPSWL-E 463

Query:   510 GFTSLLILILRSNKFDG--FLPIQLCRLTSLQILDVANNSLSGTMPG-CVNNFSAMATID 566
                +L IL+LRSN+F G  F P      + L+I D++ N  +G +P      +S M+++ 
Sbjct:   464 LLPNLQILVLRSNEFYGPIFSPGDSLSFSRLRIFDISENRFTGVLPSDYFVGWSVMSSVV 523

Query:   567 SSHQSNAMSYFEVTAYDCEVL-EDASIVMKGSMVEY-NSILNLVRIIDVSKNNFSGEIPM 624
                    + Y  VT  D +   +  +++ KG  +E   S   + + IDVS N   G+IP 
Sbjct:   524 DI-DGRIIQY-TVTGIDRDFYHKSVALINKGLKMELVGSGFTIYKTIDVSGNRLEGDIPE 581

Query:   625 ELTYLRGLQSLNLSHNIFTGQIPENIGNLISIESLDFSTNQXXXXXXXXXXXXXXXNHLN 684
              +  L+ +  L++S+N FTG IP ++ NL +++SLD S N+                 +N
Sbjct:   582 SIGLLKEVIVLSMSNNAFTGHIPPSLSNLSNLQSLDLSQNRLSGSIPGELGKLTFLEWMN 641

Query:   685 VSNNLLTGKIPSSTQLQSFDASCFVGN-NLCGPPLPSCTENNARAPKDPNGNAEQDEDEV 743
              S+N L G IP +TQ+Q+ D+S F  N  LCG PL         A K      +++ED+V
Sbjct:   642 FSHNRLEGPIPETTQIQTQDSSSFTENPGLCGAPLLKKCGGEEEATKQEQDEDKEEEDQV 701

Query:   744 DWLLYVSIAVGFVVGFWC--FIGPLLLN--RGWRYKYCRF 779
                 +++ A+G+V G  C   IG +L++  R W  +   F
Sbjct:   702 --FSWIAAAIGYVPGVVCGLTIGHILVSHKRDWFMRIVSF 739

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0006863 "purine nucleobase transport" evidence=RCA

TAIR|locus:2170483 FLS2 "FLAGELLIN-SENSITIVE 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 590 (212.7 bits), Expect = 2.5e-56, P = 2.5e-56
 Identities = 194/646 (30%), Positives = 302/646 (46%)

Query:    99 DYMRSMLSGNVNPSLVDLKHLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGII 158
             DY  + L+G +   L DL HL     +GN   G  IP  +G+L NL  L+LSG +  G I
Sbjct:   176 DY--NNLTGKIPECLGDLVHLQMFVAAGNHLTG-SIPVSIGTLANLTDLDLSGNQLTGKI 232

Query:   159 PHQLGNLSNLRCLDLSWSEYALQVHSFSWLSGQIPNRLGNLTSLRHLDLSANKFNSTTAG 218
             P   GNL NL+ L L+  E  L+        G IP  +GN +SL  L+L  N+       
Sbjct:   233 PRDFGNLLNLQSLVLT--ENLLE--------GDIPAEIGNCSSLVQLELYDNQLTGKIPA 282

Query:   219 WLSKFNHLEFLSLSSNGLQGTISSIGLENLTSIKTIDLSLNFELGGPIPTSFVRLCELTS 278
              L     L+ L +  N L  +I S  L  LT +  + LS N  L GPI      L  L  
Sbjct:   283 ELGNLVQLQALRIYKNKLTSSIPS-SLFRLTQLTHLGLSEN-HLVGPISEEIGFLESLEV 340

Query:   279 IDVSDVKLSQDLSQVLDILSACGASALESLVFSSSQISGHLTSQLGQFKSLRTLSLDDNC 338
             + +     + +  Q     S      L  L    + ISG L + LG   +LR LS  DN 
Sbjct:   341 LTLHSNNFTGEFPQ-----SITNLRNLTVLTVGFNNISGELPADLGLLTNLRNLSAHDNL 395

Query:   339 ISGPLPPAXXXXXXXXXXXXXXNMLNGSIPLSLGKISHLEYLDLSNNKMNGTLSEIHFVN 398
             ++GP+P +              N + G IP   G+++ L ++ +  N   G + +  F N
Sbjct:   396 LTGPIPSSISNCTGLKLLDLSHNQMTGEIPRGFGRMN-LTFISIGRNHFTGEIPDDIF-N 453

Query:   399 LTKLTWFSASGNSLILQVNPNWVPPFQLKTLLLMSCH--LGPQFPSWLHSQKNLSVLDIS 456
              + L   S + N+L   + P  +   Q   +L +S +   GP  P  + + K+L++L + 
Sbjct:   454 CSNLETLSVADNNLTGTLKP-LIGKLQKLRILQVSYNSLTGP-IPREIGNLKDLNILYLH 511

Query:   457 NARISDTIPRWFWN-SIFQ--------LSGIIPESFKNFSNLEVLNLGDNEFVGKIPTWM 507
             +   +  IPR   N ++ Q        L G IPE   +   L VL+L +N+F G+IP   
Sbjct:   512 SNGFTGRIPREMSNLTLLQGLRMYSNDLEGPIPEEMFDMKLLSVLDLSNNKFSGQIPALF 571

Query:   508 GEGFTSLLILILRSNKFDGFLPIQLCRLTSLQILDVANNSLSGTMPG----CVNNFSAMA 563
              +   SL  L L+ NKF+G +P  L  L+ L   D+++N L+GT+PG     + N     
Sbjct:   572 SK-LESLTYLSLQGNKFNGSIPASLKSLSLLNTFDISDNLLTGTIPGELLASLKNMQLYL 630

Query:   564 TIDSSHQSNAMSYFEVTAYDC-EVLEDASIVMKGSMVEYNSILNLVRIIDVSKNNFSGEI 622
                ++  +  +   E+   +  + ++ ++ +  GS+         V  +D S+NN SG I
Sbjct:   631 NFSNNLLTGTIPK-ELGKLEMVQEIDLSNNLFSGSIPRSLQACKNVFTLDFSQNNLSGHI 689

Query:   623 PMELTYLRGLQ---SLNLSHNIFTGQIPENIGNLISIESLDFSTNQXXXXXXXXXXXXXX 679
             P E+   +G+    SLNLS N F+G+IP++ GN+  + SLD S+N               
Sbjct:   690 PDEV--FQGMDMIISLNLSRNSFSGEIPQSFGNMTHLVSLDLSSNNLTGEIPESLANLST 747

Query:   680 XNHLNVSNNLLTGKIPSSTQLQSFDASCFVGN-NLCGP--PLPSCT 722
               HL +++N L G +P S   ++ +AS  +GN +LCG   PL  CT
Sbjct:   748 LKHLKLASNNLKGHVPESGVFKNINASDLMGNTDLCGSKKPLKPCT 793

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0006468 "protein phosphorylation" evidence=ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0004675 "transmembrane receptor protein serine/threonine kinase activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS;IDA

GO:0016045 "detection of bacterium" evidence=IMP

GO:0005886 "plasma membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0042742 "defense response to bacterium" evidence=RCA;IMP

GO:0052544 "defense response by callose deposition in cell wall" evidence=IMP

GO:0010359 "regulation of anion channel activity" evidence=IMP

GO:0016310 "phosphorylation" evidence=RCA

GO:0005768 "endosome" evidence=IDA

GO:0006898 "receptor-mediated endocytosis" evidence=IDA

TAIR|locus:2055772 RLP19 "receptor like protein 19" [Arabidopsis thaliana (taxid:3702)]

 Score = 580 (209.2 bits), Expect = 1.5e-55, P = 1.5e-55
 Identities = 191/717 (26%), Positives = 339/717 (47%)

Query:    72 NLTGHVLQLSL-RNPFRNDLRYATTEYEDYMRSMLS-----GNVNPSLVDLKHLTHLDLS 125
             NL+ H+  + L +N F  ++ ++          +LS     G +  S  +L  L  L++ 
Sbjct:   254 NLS-HLTSIDLHKNNFVGEIPFSLGNLSCLTSFILSDNNIVGEIPSSFGNLNQLDILNVK 312

Query:   126 GNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRCLDLSWSEYALQVHSF 185
              N   G   P  L +L+ L  L+L      G +P  + +LSNL+  D      A + H  
Sbjct:   313 SNKLSG-SFPIALLNLRKLSTLSLFNNRLTGTLPSNMSSLSNLKLFD------ATENH-- 363

Query:   186 SWLSGQIPNRLGNLTSLRHLDLSANKFNSTTA-GWLSKFNHLEFLSLSSNGLQGTISSIG 244
                +G +P+ L N+ SL+ + L  N+ N +   G +S +++L  L L +N  +G I    
Sbjct:   364 --FTGPLPSSLFNIPSLKTITLENNQLNGSLGFGNISSYSNLTVLRLGNNNFRGPIHR-S 420

Query:   245 LENLTSIKTIDLSLNFELGGPIP-TSFVRLCELTSIDVSDVKLSQDLSQVLDILSACGAS 303
             +  L ++K +DLS N+   G +  T F  L  +  +++S +  +  +  + +ILS+    
Sbjct:   421 ISKLVNLKELDLS-NYNTQGLVDFTIFSHLKSIEYLNLSHLNTTTTID-MYEILSSF--K 476

Query:   304 ALESLVFSSSQISGHLTSQLGQFKSLRTLS--LDDNCISGPLPPAXXXXXXXXXXXXXXN 361
              L++L  S S +S    S L    SL  +S      C     P                N
Sbjct:   477 LLDTLDLSGSHVSTTNKSSLSN-SSLVLISQLYLSGCGITEFPKFLRSQELMLTLDISNN 535

Query:   362 MLNGSIPLSLGKISHLEYLDLSNNKMNG--TLSEIHFVNLTK---LTWFSASGNSLILQV 416
              + G +P  L  +  L Y++LSNN   G    +++   ++ +   +     S N+    +
Sbjct:   536 KIKGQVPGWLWMLPVLNYVNLSNNTFIGFERSTKLGLTSIQEPPAMRQLFCSNNNFTGNI 595

Query:   417 NPNWVP--PFQLKTLLLMSCHLGPQFPSWLHSQKN--LSVLDISNARISDTIPRWFWNSI 472
              P+++   P+ L TL   +       P+ + + ++  L  L++ + R+S  +P   + S+
Sbjct:   596 -PSFICELPY-LSTLDFSNNKFNGSIPTCMGNIQSPYLQALNLRHNRLSGLLPENIFESL 653

Query:   473 F-------QLSGIIPESFKNFSNLEVLNLGDNEFVGKIPTWMGEGFTSLLILILRSNKFD 525
                     QL G +P S  + S+L +LN+  N+     P W+      L +L+LRSN F 
Sbjct:   654 ISLDVGHNQLVGKLPRSLSHISSLGLLNVESNKISDTFPLWLSS-LQELQVLVLRSNAFY 712

Query:   526 GFLPIQLCRLTSLQILDVANNSLSGTMPG-CVNNFSAMATIDSSH-QSNAMSYFEVTAYD 583
             G  PI+  + + L+I+D++ N  +GT+P     N++AM ++D +  QSN  +   +    
Sbjct:   713 G--PIEKTQFSKLRIIDISGNQFNGTLPANFFVNWTAMFSLDENEDQSNGETMSNMYMST 770

Query:   584 CEVLEDASIVM-KGSMVEYNSILNLVRIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIF 642
                  D+ ++M KG  +E   +L +  +ID S N F GEIP  +  L+ L  LNLS+N  
Sbjct:   771 DYFYFDSMVLMNKGVEMELERVLKVFTVIDFSGNKFEGEIPKSIGLLKELHVLNLSNNAL 830

Query:   643 TGQIPENIGNLISIESLDFSTNQXXXXXXXXXXXXXXXNHLNVSNNLLTGKIPSSTQLQS 702
             +G I  ++GNL+++ESLD S N+                ++N S+N L G +P  TQ Q+
Sbjct:   831 SGHIASSMGNLMALESLDVSQNKLSGEIPQELGKLTYLAYMNFSHNQLVGLLPGGTQFQT 890

Query:   703 FDASCFVGNN-LCGPPLPSCTENNARAPKDPNGNAEQDEDEVDWLLYVSIAVGFVVG 758
                S F  N+ L GP L    + + + P+  +   E +EDE + + +++  +GF++G
Sbjct:   891 QKCSSFEDNHGLYGPSLEKICDIHGKTPQQSDMAPEPEEDEEEVISWIAAVIGFILG 947

GO:0005576 "extracellular region" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00037817001 SubName- Full=Chromosome chr14 scaffold_9, whole genome shotgun sequence; (917 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	794
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-67
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-13
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-12
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	6e-11
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	4e-10
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-09
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	8e-09
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-08
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	1e-08
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	9e-08
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	7e-07
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	6e-06
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-05
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	2e-05
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	2e-05
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	2e-05
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	2e-05
pfam08263	42	pfam08263, LRRNT_2, Leucine rich repeat N-terminal	3e-05
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	1e-04
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	4e-04
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	5e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.002
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.002

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  240 bits (614), Expect = 3e-67
 Identities = 210/696 (30%), Positives = 316/696 (45%), Gaps = 131/696 (18%)

Query: 35  EREALLKLKQDLKDPSNRLGSWVVDGDCCKWAEVVCSNLTGHV-LQLSLRNPFRNDLRYA 93
           E E LL  K  + DP   L +W    D C W  + C+N +  V + LS +N         
Sbjct: 30  ELELLLSFKSSINDPLKYLSNWNSSADVCLWQGITCNNSSRVVSIDLSGKN--------- 80

Query: 94  TTEYEDYMRSMLSGNVNPSLVDLKHLTHLDLSGNDFQGIRIPKYLGSL-KNLRYLNLSGA 152
                      +SG ++ ++  L ++  ++LS N   G  IP  + +   +LRYLNLS  
Sbjct: 81  -----------ISGKISSAIFRLPYIQTINLSNNQLSG-PIPDDIFTTSSSLRYLNLSNN 128

Query: 153 EFAGIIPHQLGNLSNLRCLDLSWSEYALQVHSFSWLSGQIPNRLGNLTSLRHLDLSANKF 212
            F G IP   G++ NL  LDL          S + LSG+IPN +G+ +SL+ LDL  N  
Sbjct: 129 NFTGSIPR--GSIPNLETLDL----------SNNMLSGEIPNDIGSFSSLKVLDLGGNVL 176

Query: 213 NSTTAGWLSKFNHLEFLSLSSNGLQGTISSIGLENLTSIKTIDLSLNFELGGPIPTSFVR 272
                  L+    LEFL+L+SN L G I    L  + S+K I L  N  L G IP     
Sbjct: 177 VGKIPNSLTNLTSLEFLTLASNQLVGQIPR-ELGQMKSLKWIYLGYN-NLSGEIPYEIGG 234

Query: 273 LCELTSIDVSDVKLSQDLSQVLDILSACGASALESLVFSSSQISGHLTSQLGQFKSLRTL 332
           L  L  +D                           LV+++  ++G + S LG  K+L+ L
Sbjct: 235 LTSLNHLD---------------------------LVYNN--LTGPIPSSLGNLKNLQYL 265

Query: 333 SLDDNCISGPLPPALGDLSSLTRLDLSRNMLNGSIPLSLGKISHLEYLDLSNNKMNGTLS 392
            L  N +SGP+PP++  L  L  LDLS N L+G IP  + ++ +LE L L +N   G + 
Sbjct: 266 FLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIP 325

Query: 393 EIHFVNLTKLTWFSASGNSLILQVNPNWVPPFQLKTLLLMSCHLGPQFPSWLHSQKNLSV 452
               V LT L                      +L+ L L S     + P  L    NL+V
Sbjct: 326 ----VALTSLP---------------------RLQVLQLWSNKFSGEIPKNLGKHNNLTV 360

Query: 453 LDISNARISDTIPRWFWNS--IFQ-------LSGIIPESFKNFSNLEVLNLGDNEFVGKI 503
           LD+S   ++  IP    +S  +F+       L G IP+S     +L  + L DN F G++
Sbjct: 361 LDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGEL 420

Query: 504 PTWMGEGFTSLLI---LILRSNKFDGFLPIQLCRLTSLQILDVANNSLSGTMPGCVNNFS 560
           P+     FT L +   L + +N   G +  +   + SLQ+L +A N   G +P       
Sbjct: 421 PS----EFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLP------- 469

Query: 561 AMATIDSSHQSNAMSYFEVTAYDCEVLEDASIVMKGSMVEYNSILNLVRIIDVSKNNFSG 620
                DS                 E L+ +     G++      L+ +  + +S+N  SG
Sbjct: 470 -----DSFGSKR-----------LENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSG 513

Query: 621 EIPMELTYLRGLQSLNLSHNIFTGQIPENIGNLISIESLDFSTNQLSSKISQSMSSLSFL 680
           EIP EL+  + L SL+LSHN  +GQIP +   +  +  LD S NQLS +I +++ ++  L
Sbjct: 514 EIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESL 573

Query: 681 NHLNVSNNLLTGKIPSSTQLQSFDASCFVGNN-LCG 715
             +N+S+N L G +PS+    + +AS   GN  LCG
Sbjct: 574 VQVNISHNHLHGSLPSTGAFLAINASAVAGNIDLCG 609

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 74.1 bits (182), Expect = 1e-13
 Identities = 40/106 (37%), Positives = 64/106 (60%), Gaps = 4/106 (3%)

Query: 620 GEIPMELTYLRGLQSLNLSHNIFTGQIPENIGNLISIESLDFSTNQLSSKISQSMSSLSF 679
           G IP +++ LR LQS+NLS N   G IP ++G++ S+E LD S N  +  I +S+  L+ 
Sbjct: 432 GFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTS 491

Query: 680 LNHLNVSNNLLTGKIPSSTQLQSFDASCF-VGNN--LCG-PPLPSC 721
           L  LN++ N L+G++P++   +    + F   +N  LCG P L +C
Sbjct: 492 LRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRAC 537

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 70.6 bits (173), Expect = 2e-12
 Identities = 30/75 (40%), Positives = 51/75 (68%)

Query: 317 GHLTSQLGQFKSLRTLSLDDNCISGPLPPALGDLSSLTRLDLSRNMLNGSIPLSLGKISH 376
           G + + + + + L++++L  N I G +PP+LG ++SL  LDLS N  NGSIP SLG+++ 
Sbjct: 432 GFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTS 491

Query: 377 LEYLDLSNNKMNGTL 391
           L  L+L+ N ++G +
Sbjct: 492 LRILNLNGNSLSGRV 506

Length = 623

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 66.0 bits (161), Expect = 6e-11
 Identities = 57/176 (32%), Positives = 81/176 (46%), Gaps = 14/176 (7%)

Query: 99  DYMRSMLSGNVNPSLVDLKHLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGII 158
              R+   G + P     K L +LDLS N F G  +P+ LGSL  L  L LS  + +G I
Sbjct: 458 SLARNKFFGGL-PDSFGSKRLENLDLSRNQFSGA-VPRKLGSLSELMQLKLSENKLSGEI 515

Query: 159 PHQLGNLSNLRCLDLSWSEYALQVHSFSWLSGQIPNRLGNLTSLRHLDLSANKFNSTTAG 218
           P +L +   L  LDLS ++          LSGQIP     +  L  LDLS N+ +     
Sbjct: 516 PDELSSCKKLVSLDLSHNQ----------LSGQIPASFSEMPVLSQLDLSQNQLSGEIPK 565

Query: 219 WLSKFNHLEFLSLSSNGLQGTISSIGLENLTSIKTIDLSLNFELGGPIPTSFVRLC 274
            L     L  +++S N L G++ S G     +I    ++ N +L G   TS +  C
Sbjct: 566 NLGNVESLVQVNISHNHLHGSLPSTGA--FLAINASAVAGNIDLCGGDTTSGLPPC 619

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 62.9 bits (153), Expect = 4e-10
 Identities = 34/82 (41%), Positives = 47/82 (57%), Gaps = 1/82 (1%)

Query: 475 LSGIIPESFKNFSNLEVLNLGDNEFVGKIPTWMGEGFTSLLILILRSNKFDGFLPIQLCR 534
           L G IP       +L+ +NL  N   G IP  +G   TSL +L L  N F+G +P  L +
Sbjct: 430 LRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGS-ITSLEVLDLSYNSFNGSIPESLGQ 488

Query: 535 LTSLQILDVANNSLSGTMPGCV 556
           LTSL+IL++  NSLSG +P  +
Sbjct: 489 LTSLRILNLNGNSLSGRVPAAL 510

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 61.4 bits (149), Expect = 1e-09
 Identities = 37/91 (40%), Positives = 53/91 (58%), Gaps = 12/91 (13%)

Query: 122 LDLSGNDFQGIR--IPKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRCLDLSWSEYA 179
           +D  G D QG+R  IP  +  L++L+ +NLSG    G IP  LG++++L  LDLS++   
Sbjct: 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNS-- 477

Query: 180 LQVHSFSWLSGQIPNRLGNLTSLRHLDLSAN 210
                    +G IP  LG LTSLR L+L+ N
Sbjct: 478 --------FNGSIPESLGQLTSLRILNLNGN 500

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 58.7 bits (142), Expect = 8e-09
 Identities = 34/81 (41%), Positives = 47/81 (58%), Gaps = 1/81 (1%)

Query: 332 LSLDDNCISGPLPPALGDLSSLTRLDLSRNMLNGSIPLSLGKISHLEYLDLSNNKMNGTL 391
           L LD+  + G +P  +  L  L  ++LS N + G+IP SLG I+ LE LDLS N  NG++
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 392 SEIHFVNLTKLTWFSASGNSL 412
            E     LT L   + +GNSL
Sbjct: 483 PE-SLGQLTSLRILNLNGNSL 502

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 58.3 bits (141), Expect = 1e-08
 Identities = 35/113 (30%), Positives = 53/113 (46%), Gaps = 19/113 (16%)

Query: 611 IDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQIPENIGNLISIESLDFSTNQLSSKI 670
           I++S N+  G IP  L  +  L+ L+LS+N F G IPE++G L S+  L+ + N LS ++
Sbjct: 447 INLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRV 506

Query: 671 SQSMSSLSFLNH---LNVSNNLLTGKIPSSTQLQSFDASCFVGNNLCGPPLPS 720
             ++     L H    N ++N     IP              G   CGP L  
Sbjct: 507 PAALGGR--LLHRASFNFTDNAGLCGIP--------------GLRACGPHLSV 543

Length = 623

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 57.3 bits (138), Expect = 1e-08
 Identities = 70/252 (27%), Positives = 111/252 (44%), Gaps = 28/252 (11%)

Query: 112 SLVDLKHLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRCL 171
            L++L +LT LDL  N+   I     L    NL+ L+LS  +    +P  L NL NL+ L
Sbjct: 111 ELLELTNLTSLDLDNNNITDIPPLIGL-LKSNLKELDLSDNKIE-SLPSPLRNLPNLKNL 168

Query: 172 DLSWSEYALQVHSFSWLSGQIPNRLGNLTSLRHLDLSANKFNSTTAGWLSKFNHLEFLSL 231
           DLS+++ +            +P  L NL++L +LDLS NK +      +   + LE L L
Sbjct: 169 DLSFNDLS-----------DLPKLLSNLSNLNNLDLSGNKISDLPPE-IELLSALEELDL 216

Query: 232 SSNGLQGTISSIGLENLTSIKTIDLSLNFELGGPIPTSFVRLCELTSIDVSDVKLSQDLS 291
           S+N +   +SS+   NL ++  ++LS N      +P S   L  L ++D+S+ ++S    
Sbjct: 217 SNNSIIELLSSLS--NLKNLSGLELSNNKLE--DLPESIGNLSNLETLDLSNNQIS---- 268

Query: 292 QVLDILSACGASALESLVFSSSQISGHLTSQLGQFKSLRTLSLDDNCISGPLPPALGDLS 351
               I S    + L  L  S + +S  L         L  L    N +       L   S
Sbjct: 269 ---SISSLGSLTNLRELDLSGNSLSNALPLIALLLLLLELLL---NLLLTLKALELKLNS 322

Query: 352 SLTRLDLSRNML 363
            L   ++  N  
Sbjct: 323 ILLNNNILSNGE 334

Length = 394

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 55.2 bits (133), Expect = 9e-08
 Identities = 55/174 (31%), Positives = 75/174 (43%), Gaps = 42/174 (24%)

Query: 33  DSEREALLKLKQDLKDPSNRLGSWVVDGDCC-----KWAEVVCS--NLTGH--VLQLSLR 83
             E  AL  LK  L  P  R G W  +GD C      W+   C   +  G   +  L L 
Sbjct: 371 LEEVSALQTLKSSLGLPL-RFG-W--NGDPCVPQQHPWSGADCQFDSTKGKWFIDGLGLD 426

Query: 84  NPFRNDLRYATTEYEDYMRSMLSGNVNPSLVDLKHLTHLDLSGNDFQGIRIPKYLGSLKN 143
           N                    L G +   +  L+HL  ++LSGN  +G  IP  LGS+ +
Sbjct: 427 N------------------QGLRGFIPNDISKLRHLQSINLSGNSIRG-NIPPSLGSITS 467

Query: 144 LRYLNLSGAEFAGIIPHQLGNLSNLRCLDLSWSEYALQVHSFSWLSGQIPNRLG 197
           L  L+LS   F G IP  LG L++LR L+L+           + LSG++P  LG
Sbjct: 468 LEVLDLSYNSFNGSIPESLGQLTSLRILNLNG----------NSLSGRVPAALG 511

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 52.5 bits (126), Expect = 7e-07
 Identities = 27/68 (39%), Positives = 41/68 (60%)

Query: 305 LESLVFSSSQISGHLTSQLGQFKSLRTLSLDDNCISGPLPPALGDLSSLTRLDLSRNMLN 364
           L+S+  S + I G++   LG   SL  L L  N  +G +P +LG L+SL  L+L+ N L+
Sbjct: 444 LQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLS 503

Query: 365 GSIPLSLG 372
           G +P +LG
Sbjct: 504 GRVPAALG 511

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 49.4 bits (118), Expect = 6e-06
 Identities = 39/137 (28%), Positives = 61/137 (44%), Gaps = 36/137 (26%)

Query: 212 FNSTTAGWLSKFNHLEFLSLSSNGLQGTISSIGLENLTSIKTIDLSLNFELGGPIPTSFV 271
           F+ST   W      ++ L L + GL+G I +  +  L  +++I+LS N  + G IP S  
Sbjct: 411 FDSTKGKWF-----IDGLGLDNQGLRGFIPN-DISKLRHLQSINLSGNS-IRGNIPPSLG 463

Query: 272 RLCELTSIDVSDVKLSQDLSQVLDILSACGASALESLVFSSSQISGHLTSQLGQFKSLRT 331
            +                             ++LE L  S +  +G +   LGQ  SLR 
Sbjct: 464 SI-----------------------------TSLEVLDLSYNSFNGSIPESLGQLTSLRI 494

Query: 332 LSLDDNCISGPLPPALG 348
           L+L+ N +SG +P ALG
Sbjct: 495 LNLNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 47.9 bits (114), Expect = 2e-05
 Identities = 31/96 (32%), Positives = 47/96 (48%), Gaps = 10/96 (10%)

Query: 147 LNLSGAEFAGIIPHQLGNLSNLRCLDLSWSEYALQVHSFSWLSGQIPNRLGNLTSLRHLD 206
           L L      G IP+ +  L +L+ ++LS +           + G IP  LG++TSL  LD
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNS----------IRGNIPPSLGSITSLEVLD 472

Query: 207 LSANKFNSTTAGWLSKFNHLEFLSLSSNGLQGTISS 242
           LS N FN +    L +   L  L+L+ N L G + +
Sbjct: 473 LSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPA 508

Length = 623

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 47.7 bits (113), Expect = 2e-05
 Identities = 81/276 (29%), Positives = 121/276 (43%), Gaps = 33/276 (11%)

Query: 161 QLGNLSNLRCLDLSWSEYALQVHSFSWLSGQI------PNRLGNLTSLRHLDLSANKFNS 214
            L  LS      L  SE  L +     L   +       + L  LT+L  LDL  N    
Sbjct: 71  SLDLLSPSGISSLDGSENLLNLLPLPSLDLNLNRLRSNISELLELTNLTSLDLDNNNITD 130

Query: 215 TTAGWLSKFN-HLEFLSLSSNGLQGTISSIGLENLTSIKTIDLSLN--FELGGPIPTSFV 271
                +     +L+ L LS N ++       L NL ++K +DLS N   +    +P    
Sbjct: 131 IP-PLIGLLKSNLKELDLSDNKIE--SLPSPLRNLPNLKNLDLSFNDLSD----LPKLLS 183

Query: 272 RLCELTSIDVSDVKLSQDLSQVLDILSACGASALESLVFSSSQISGHLTSQLGQFKSLRT 331
            L  L ++D+S  K+S DL   ++       SALE L  S++ I   L+S L   K+L  
Sbjct: 184 NLSNLNNLDLSGNKIS-DLPPEIE-----LLSALEELDLSNNSIIELLSS-LSNLKNLSG 236

Query: 332 LSLDDNCISGPLPPALGDLSSLTRLDLSRNMLNGSIPLSLGKISHLEYLDLSNNKMNGTL 391
           L L +N +   LP ++G+LS+L  LDLS N +  S   SLG +++L  LDLS N ++  L
Sbjct: 237 LELSNNKLE-DLPESIGNLSNLETLDLSNNQI--SSISSLGSLTNLRELDLSGNSLSNAL 293

Query: 392 SEIHFVNLTK-------LTWFSASGNSLILQVNPNW 420
             I  + L         LT  +       + +N N 
Sbjct: 294 PLIALLLLLLELLLNLLLTLKALELKLNSILLNNNI 329

Length = 394

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 42.5 bits (101), Expect = 2e-05
 Identities = 23/57 (40%), Positives = 27/57 (47%), Gaps = 1/57 (1%)

Query: 118 HLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRCLDLS 174
           +L  LDLS N    I        L NL+ L+LSG     I P     L +LR LDLS
Sbjct: 1   NLKSLDLSNNRLTVIP-DGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLS 56

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 42.1 bits (100), Expect = 2e-05
 Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 1/61 (1%)

Query: 352 SLTRLDLSRNMLNGSIPLSLGKISHLEYLDLSNNKMNGTLSEIHFVNLTKLTWFSASGNS 411
           +L  LDLS N L      +   + +L+ LDLS N +  ++S   F  L  L     SGN+
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLT-SISPEAFSGLPSLRSLDLSGNN 59

Query: 412 L 412
           L
Sbjct: 60  L 60

Length = 60

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 47.0 bits (112), Expect = 2e-05
 Identities = 49/239 (20%), Positives = 75/239 (31%), Gaps = 47/239 (19%)

Query: 196 LGNLTSLRHLDLSANKFNSTTAGWLSKFNH---LEFLSLSSNGLQGTISSIGLENLTSIK 252
           L     L+ LDLS N       G L        L+ L L++NGL      +  + L  + 
Sbjct: 77  LTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLP 136

Query: 253 TIDLSLNFELGGPIPTSFVRLCELTSIDVSDVKLSQDLS-QVLDILSACGASALESLVFS 311
                                  L  + +   +L       +   L A     L+ L  +
Sbjct: 137 ---------------------PALEKLVLGRNRLEGASCEALAKALRANR--DLKELNLA 173

Query: 312 SSQISG----HLTSQLGQFKSLRTLSLDDNCI----SGPLPPALGDLSSLTRLDLSRNML 363
           ++ I       L   L    +L  L L++N +    +  L   L  L SL  L+L  N L
Sbjct: 174 NNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNL 233

Query: 364 NGSIPLS------LGKISHLEYLDLSNNKMN----GTLSEIHFVNLTKLTWFSASGNSL 412
                 +      L     L  L LS N +       L+E+     + L      GN  
Sbjct: 234 -TDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKES-LLELDLRGNKF 290

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|219766 pfam08263, LRRNT_2, Leucine rich repeat N-terminal domain

 Score = 41.2 bits (97), Expect = 3e-05
 Identities = 17/41 (41%), Positives = 20/41 (48%), Gaps = 2/41 (4%)

Query: 33 DSEREALLKLKQDL-KDPSNRLGSWVV-DGDCCKWAEVVCS 71
          + +R+ALL  K  L  DPS  L SW     D C W  V C 
Sbjct: 2  NDDRDALLAFKSSLNGDPSGALSSWNPSSSDPCSWTGVTCD 42

Leucine Rich Repeats pfam00560 are short sequence motifs present in a number of proteins with diverse functions and cellular locations. Leucine Rich Repeats are often flanked by cysteine rich domains. This domain is often found at the N-terminus of tandem leucine rich repeats. Length = 42

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 40.2 bits (95), Expect = 1e-04
 Identities = 20/59 (33%), Positives = 29/59 (49%)

Query: 328 SLRTLSLDDNCISGPLPPALGDLSSLTRLDLSRNMLNGSIPLSLGKISHLEYLDLSNNK 386
           +L++L L +N ++     A   L +L  LDLS N L    P +   +  L  LDLS N 
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNN 59

Length = 60

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 43.4 bits (102), Expect = 4e-04
 Identities = 61/231 (26%), Positives = 100/231 (43%), Gaps = 13/231 (5%)

Query: 479 IPESFKNFSNLEVLNLGDNEFVGKIPTWMGEGFTSLLILILRSNKFDGFLPIQLCRLTSL 538
             E+  N   L  L+L  N     I   +    T+L  L L +N      P+     ++L
Sbjct: 85  GSENLLNLLPLPSLDLNLNRLRSNISELLE--LTNLTSLDLDNNNITDIPPLIGLLKSNL 142

Query: 539 QILDVANNSLSGTMPGCVNNFSAMATIDSSHQSNAMSYFEVTAYDCEVLEDAS---IVMK 595
           + LD+++N +  ++P  + N   +  +D S    +     ++        D S   I   
Sbjct: 143 KELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNKISDL 201

Query: 596 GSMVEYNSILNLVRIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQIPENIGNLIS 655
              +E  S L  + +     NN   E+   L+ L+ L  L LS+N     +PE+IGNL +
Sbjct: 202 PPEIELLSALEELDL----SNNSIIELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSN 256

Query: 656 IESLDFSTNQLSSKISQSMSSLSFLNHLNVSNNLLTGKIPSSTQLQSFDAS 706
           +E+LD S NQ+SS  S    SL+ L  L++S N L+  +P    L      
Sbjct: 257 LETLDLSNNQISSISSL--GSLTNLRELDLSGNSLSNALPLIALLLLLLEL 305

Length = 394

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 43.3 bits (102), Expect = 5e-04
 Identities = 31/140 (22%), Positives = 58/140 (41%), Gaps = 47/140 (33%)

Query: 526 GFLPIQLCRLTSLQILDVANNSLSGTMPGCVNNFSAMATIDSSHQSNAMSYFEVTAYDCE 585
           GF+P  + +L  LQ ++++ NS+ G +P  + + +++  +D S+                
Sbjct: 432 GFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSY---------------- 475

Query: 586 VLEDASIVMKGSMVEYNSILNLVRIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQ 645
                                         N+F+G IP  L  L  L+ LNL+ N  +G+
Sbjct: 476 ------------------------------NSFNGSIPESLGQLTSLRILNLNGNSLSGR 505

Query: 646 IPENIGN-LISIESLDFSTN 664
           +P  +G  L+   S +F+ N
Sbjct: 506 VPAALGGRLLHRASFNFTDN 525

Length = 623

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 37.1 bits (87), Expect = 0.002
 Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 1/59 (1%)

Query: 201 SLRHLDLSANKFNSTTAGWLSKFNHLEFLSLSSNGLQGTISSIGLENLTSIKTIDLSLN 259
           +L+ LDLS N+      G      +L+ L LS N L  +IS      L S++++DLS N
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLT-SISPEAFSGLPSLRSLDLSGN 58

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 37.1 bits (87), Expect = 0.002
 Identities = 21/60 (35%), Positives = 32/60 (53%)

Query: 631 GLQSLNLSHNIFTGQIPENIGNLISIESLDFSTNQLSSKISQSMSSLSFLNHLNVSNNLL 690
            L+SL+LS+N  T         L +++ LD S N L+S   ++ S L  L  L++S N L
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	794
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
KOG0472	565	consensus Leucine-rich repeat protein [Function un	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG0472	565	consensus Leucine-rich repeat protein [Function un	100.0
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	100.0
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.97
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.97
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.97
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.9
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.88
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.88
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.88
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.87
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.87
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.8
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.78
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.71
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.71
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.66
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.63
PLN03150	623	hypothetical protein; Provisional	99.56
PLN03150	623	hypothetical protein; Provisional	99.55
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.27
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.18
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.16
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.14
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.03
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.99
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.97
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.91
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.9
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.89
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.88
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.86
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.85
PF08263	43	LRRNT_2: Leucine rich repeat N-terminal domain; In	98.81
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.8
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.8
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.78
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.74
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.57
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.38
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.35
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.29
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.26
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.18
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.15
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.05
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.04
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.04
PRK15386	426	type III secretion protein GogB; Provisional	98.01
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.93
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.92
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.74
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.55
PRK15386	426	type III secretion protein GogB; Provisional	97.55
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.45
KOG4341	483	consensus F-box protein containing LRR [General fu	97.24
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.21
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.12
KOG4341	483	consensus F-box protein containing LRR [General fu	97.05
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.0
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	96.83
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.52
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	96.48
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.34
KOG2123	388	consensus Uncharacterized conserved protein [Funct	95.84
KOG1947	482	consensus Leucine rich repeat proteins, some prote	95.7
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.55
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.34
KOG1947	482	consensus Leucine rich repeat proteins, some prote	94.11
KOG0473	326	consensus Leucine-rich repeat protein [Function un	93.38
KOG4308	478	consensus LRR-containing protein [Function unknown	93.32
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	91.75
KOG0473	326	consensus Leucine-rich repeat protein [Function un	91.46
KOG4308	478	consensus LRR-containing protein [Function unknown	91.28
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	90.3
smart00370	26	LRR Leucine-rich repeats, outliers.	88.01
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	88.01
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	87.12
smart00370	26	LRR Leucine-rich repeats, outliers.	87.12
KOG3864	221	consensus Uncharacterized conserved protein [Funct	85.35
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	84.05
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	83.91

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=7.1e-74  Score=698.15  Aligned_cols=583  Identities=33%  Similarity=0.534  Sum_probs=544.2

Q ss_pred             CHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcceeeeEecCCCCcEEEEEcCCCCCccccccchhhhhccccccceeecc
Q 046398           32 TDSEREALLKLKQDLKDPSNRLGSWVVDGDCCKWAEVVCSNLTGHVLQLSLRNPFRNDLRYATTEYEDYMRSMLSGNVNP  111 (794)
Q Consensus        32 ~~~~~~~ll~~k~~~~~~~~~~~~W~~~~~~c~w~gv~c~~~~~~v~~L~l~~~~~~~~~~~~~~~~~~~~~~l~g~~~~  111 (794)
                      .++|++||++||+++.+|.+.+.+|+.+.+||.|.||+|++ .++|+.|++++                  +.++|.+++
T Consensus        27 ~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~c~w~gv~c~~-~~~v~~L~L~~------------------~~i~~~~~~   87 (968)
T PLN00113         27 HAEELELLLSFKSSINDPLKYLSNWNSSADVCLWQGITCNN-SSRVVSIDLSG------------------KNISGKISS   87 (968)
T ss_pred             CHHHHHHHHHHHHhCCCCcccCCCCCCCCCCCcCcceecCC-CCcEEEEEecC------------------CCccccCCh
Confidence            56899999999999988888889998778999999999985 57999999998                  478899999


Q ss_pred             cccCCCCCCEEeCCCCCCCCCCCCcccC-CCCCCCEEEcCCCCCCCCCcccccCCccccccccCcccccccccccccccc
Q 046398          112 SLVDLKHLTHLDLSGNDFQGIRIPKYLG-SLKNLRYLNLSGAEFAGIIPHQLGNLSNLRCLDLSWSEYALQVHSFSWLSG  190 (794)
Q Consensus       112 ~l~~l~~L~~L~Ls~n~l~~~~~p~~~~-~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~~~  190 (794)
                      .+..+++|++|+|++|++.+. +|..+. .+++|++|+|++|++++.+|.  +.+++|++|++++|.          +.+
T Consensus        88 ~~~~l~~L~~L~Ls~n~~~~~-ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~----------~~~  154 (968)
T PLN00113         88 AIFRLPYIQTINLSNNQLSGP-IPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNM----------LSG  154 (968)
T ss_pred             HHhCCCCCCEEECCCCccCCc-CChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCc----------ccc
Confidence            999999999999999999874 887654 899999999999999988885  578999999999887          556


Q ss_pred             CCCCccCCCCCCCEEECcCCCCCCCCCccccCCCCCCeEeeeccCCCCCCCccccCCCCCCcEEEccCCCCCCCCCchhh
Q 046398          191 QIPNRLGNLTSLRHLDLSANKFNSTTAGWLSKFNHLEFLSLSSNGLQGTISSIGLENLTSIKTIDLSLNFELGGPIPTSF  270 (794)
Q Consensus       191 ~lp~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~~~~~~~~~~~~l  270 (794)
                      .+|..++++++|++|++++|.+.+..|..+.++++|++|++++|.+.+.+|. .++++++|++|+++ ++.+.+.+|..+
T Consensus       155 ~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~-~l~~l~~L~~L~L~-~n~l~~~~p~~l  232 (968)
T PLN00113        155 EIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPR-ELGQMKSLKWIYLG-YNNLSGEIPYEI  232 (968)
T ss_pred             cCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCCh-HHcCcCCccEEECc-CCccCCcCChhH
Confidence            8899999999999999999999999999999999999999999999998888 89999999999999 778899999999


Q ss_pred             hccCCCCEEEccCCCCCcchHHHHHhhhhcCcCCccEEEeecccccccccccccCCCCCCEEEccCCcCcCCCCCCcCCC
Q 046398          271 VRLCELTSIDVSDVKLSQDLSQVLDILSACGASALESLVFSSSQISGHLTSQLGQFKSLRTLSLDDNCISGPLPPALGDL  350 (794)
Q Consensus       271 ~~l~~L~~L~l~~~~l~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l  350 (794)
                      .++++|+.|++++|.+.+..|..+..++     +|++|++++|.+++..|..+..+++|++|++++|.+.+.+|..+.++
T Consensus       233 ~~l~~L~~L~L~~n~l~~~~p~~l~~l~-----~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l  307 (968)
T PLN00113        233 GGLTSLNHLDLVYNNLTGPIPSSLGNLK-----NLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQL  307 (968)
T ss_pred             hcCCCCCEEECcCceeccccChhHhCCC-----CCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCC
Confidence            9999999999999999999999888777     99999999999999999999999999999999999999999999999


Q ss_pred             CCCCEEEccCCcccccCCccccCCCCCCeEeccCcccccccChhhhcCCCCCCEEECcCCcceeEcCCCCcCccccceEe
Q 046398          351 SSLTRLDLSRNMLNGSIPLSLGKISHLEYLDLSNNKMNGTLSEIHFVNLTKLTWFSASGNSLILQVNPNWVPPFQLKTLL  430 (794)
Q Consensus       351 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~  430 (794)
                      ++|++|++++|.+++.+|..+..+++|+.|++++|.+.+.+|. .+..+++|+.|++++|.+.+..+..+....+|+.|+
T Consensus       308 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~-~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~  386 (968)
T PLN00113        308 QNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPK-NLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLI  386 (968)
T ss_pred             CCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCCh-HHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEE
Confidence            9999999999999999999999999999999999999988887 788999999999999999999999999999999999


Q ss_pred             cccccCCCCCCcccCCCCCCCEEeccCCCCCCCcchhHHhccccceeccCcccCCCCCCCEEEccCCcccccCChhhhhc
Q 046398          431 LMSCHLGPQFPSWLHSQKNLSVLDISNARISDTIPRWFWNSIFQLSGIIPESFKNFSNLEVLNLGDNEFVGKIPTWMGEG  510 (794)
Q Consensus       431 L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~  510 (794)
                      +++|.+.+.+|..+..+++|+.|++++|++++               .+|..+..+++|+.|++++|++++.+|.... .
T Consensus       387 l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~---------------~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-~  450 (968)
T PLN00113        387 LFSNSLEGEIPKSLGACRSLRRVRLQDNSFSG---------------ELPSEFTKLPLVYFLDISNNNLQGRINSRKW-D  450 (968)
T ss_pred             CcCCEecccCCHHHhCCCCCCEEECcCCEeee---------------ECChhHhcCCCCCEEECcCCcccCccChhhc-c
Confidence            99999999999999999999999999998776               4667788899999999999999998888776 6


Q ss_pred             CCCCcEEEcccccccccCCccccCCCCCCEEEccCCcCcccCCchhhccccccccccccCCCCcccccccccccccceee
Q 046398          511 FTSLLILILRSNKFDGFLPIQLCRLTSLQILDVANNSLSGTMPGCVNNFSAMATIDSSHQSNAMSYFEVTAYDCEVLEDA  590 (794)
Q Consensus       511 l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~  590 (794)
                      +++|+.|++++|++.+.+|..+ ..++|+.||+++|++++.+|..+.++++|                            
T Consensus       451 l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~~L----------------------------  501 (968)
T PLN00113        451 MPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSLSEL----------------------------  501 (968)
T ss_pred             CCCCcEEECcCceeeeecCccc-ccccceEEECcCCccCCccChhhhhhhcc----------------------------
Confidence            9999999999999999888766 46899999999999999999887765555                            


Q ss_pred             EEEEeccchhhcccccceeEEEcCCCccccccChhhhcccCCCEEecccccccccCCccccccCCCCEEeCCCCcCcccC
Q 046398          591 SIVMKGSMVEYNSILNLVRIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQIPENIGNLISIESLDFSTNQLSSKI  670 (794)
Q Consensus       591 ~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~  670 (794)
                                        +.|++++|++.+.+|..+..+++|++|+|++|.+++.+|..++++++|+.|||++|++++.+
T Consensus       502 ------------------~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~  563 (968)
T PLN00113        502 ------------------MQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEI  563 (968)
T ss_pred             ------------------CEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccC
Confidence                              88999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccCCCCCCEEeCcCCcccccCCCCCccCccCcccccCC-CcCCCC
Q 046398          671 SQSMSSLSFLNHLNVSNNLLTGKIPSSTQLQSFDASCFVGN-NLCGPP  717 (794)
Q Consensus       671 p~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gn-~lcg~~  717 (794)
                      |..+..+++|+.|++++|+++|.+|..+++.++...++.|| .+||.+
T Consensus       564 p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~  611 (968)
T PLN00113        564 PKNLGNVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGNIDLCGGD  611 (968)
T ss_pred             ChhHhcCcccCEEeccCCcceeeCCCcchhcccChhhhcCCccccCCc
Confidence            99999999999999999999999999999999999999999 899865

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=7.5e-59  Score=566.27  Aligned_cols=515  Identities=31%  Similarity=0.475  Sum_probs=469.5

Q ss_pred             CCCCEEeCCCCCCCCCCCCcccCCCCCCCEEEcCCCCCCCCCccccc-CCccccccccCccccccccccccccccCCCCc
Q 046398          117 KHLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLG-NLSNLRCLDLSWSEYALQVHSFSWLSGQIPNR  195 (794)
Q Consensus       117 ~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~-~l~~L~~L~Ls~~~~~~~~~~~~~~~~~lp~~  195 (794)
                      .+++.|+|++|.+++. +|..+..+++|++|+|++|++++.+|..+. .+++|++|++++|.          +.+.+|. 
T Consensus        69 ~~v~~L~L~~~~i~~~-~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~----------l~~~~p~-  136 (968)
T PLN00113         69 SRVVSIDLSGKNISGK-ISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNN----------FTGSIPR-  136 (968)
T ss_pred             CcEEEEEecCCCcccc-CChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCc----------cccccCc-
Confidence            4799999999999985 888999999999999999999988887765 99999999999887          4456664 


Q ss_pred             cCCCCCCCEEECcCCCCCCCCCccccCCCCCCeEeeeccCCCCCCCccccCCCCCCcEEEccCCCCCCCCCchhhhccCC
Q 046398          196 LGNLTSLRHLDLSANKFNSTTAGWLSKFNHLEFLSLSSNGLQGTISSIGLENLTSIKTIDLSLNFELGGPIPTSFVRLCE  275 (794)
Q Consensus       196 l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~  275 (794)
                       +.+++|++|++++|.+++..|..++++++|++|++++|.+.+.+|. .+.++++|++|+++ +|.+.+.+|..+.++++
T Consensus       137 -~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~-~~~~l~~L~~L~L~-~n~l~~~~p~~l~~l~~  213 (968)
T PLN00113        137 -GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPN-SLTNLTSLEFLTLA-SNQLVGQIPRELGQMKS  213 (968)
T ss_pred             -cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCCh-hhhhCcCCCeeecc-CCCCcCcCChHHcCcCC
Confidence             5689999999999999999999999999999999999999988888 89999999999999 77888999999999999


Q ss_pred             CCEEEccCCCCCcchHHHHHhhhhcCcCCccEEEeecccccccccccccCCCCCCEEEccCCcCcCCCCCCcCCCCCCCE
Q 046398          276 LTSIDVSDVKLSQDLSQVLDILSACGASALESLVFSSSQISGHLTSQLGQFKSLRTLSLDDNCISGPLPPALGDLSSLTR  355 (794)
Q Consensus       276 L~~L~l~~~~l~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~  355 (794)
                      |+.|++++|.+.+.+|..+..++     +|++|++++|.+++.+|..++.+++|++|++++|.+.+.+|..+.++++|++
T Consensus       214 L~~L~L~~n~l~~~~p~~l~~l~-----~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~  288 (968)
T PLN00113        214 LKWIYLGYNNLSGEIPYEIGGLT-----SLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLIS  288 (968)
T ss_pred             ccEEECcCCccCCcCChhHhcCC-----CCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCE
Confidence            99999999999999999888776     9999999999999999999999999999999999999999999999999999


Q ss_pred             EEccCCcccccCCccccCCCCCCeEeccCcccccccChhhhcCCCCCCEEECcCCcceeEcCCCCcCccccceEeccccc
Q 046398          356 LDLSRNMLNGSIPLSLGKISHLEYLDLSNNKMNGTLSEIHFVNLTKLTWFSASGNSLILQVNPNWVPPFQLKTLLLMSCH  435 (794)
Q Consensus       356 L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~  435 (794)
                      |++++|.+.+.+|..+..+++|++|++++|.+.+.++. .+..+++|+.|++++|.+.+..+..+....+|+.|++++|.
T Consensus       289 L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~-~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~  367 (968)
T PLN00113        289 LDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPV-ALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNN  367 (968)
T ss_pred             EECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCCh-hHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCe
Confidence            99999999999999999999999999999999988776 68899999999999999998888888888999999999999


Q ss_pred             CCCCCCcccCCCCCCCEEeccCCCCCCCcchhHHhccccceeccCcccCCCCCCCEEEccCCcccccCChhhhhcCCCCc
Q 046398          436 LGPQFPSWLHSQKNLSVLDISNARISDTIPRWFWNSIFQLSGIIPESFKNFSNLEVLNLGDNEFVGKIPTWMGEGFTSLL  515 (794)
Q Consensus       436 l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~  515 (794)
                      +.+.+|.++..+++|+.|++++|++.+.               +|..+..+++|+.|++++|++++.+|..+. .+++|+
T Consensus       368 l~~~~p~~~~~~~~L~~L~l~~n~l~~~---------------~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~-~l~~L~  431 (968)
T PLN00113        368 LTGEIPEGLCSSGNLFKLILFSNSLEGE---------------IPKSLGACRSLRRVRLQDNSFSGELPSEFT-KLPLVY  431 (968)
T ss_pred             eEeeCChhHhCcCCCCEEECcCCEeccc---------------CCHHHhCCCCCCEEECcCCEeeeECChhHh-cCCCCC
Confidence            9999999999999999999999988764               556677889999999999999988888776 799999


Q ss_pred             EEEcccccccccCCccccCCCCCCEEEccCCcCcccCCchhhccccccccccccCCCCcccccccccccccceeeEEEEe
Q 046398          516 ILILRSNKFDGFLPIQLCRLTSLQILDVANNSLSGTMPGCVNNFSAMATIDSSHQSNAMSYFEVTAYDCEVLEDASIVMK  595 (794)
Q Consensus       516 ~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  595 (794)
                      .|++++|++++.+|..+..+++|+.|++++|++.+.+|..+.                                      
T Consensus       432 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~--------------------------------------  473 (968)
T PLN00113        432 FLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFG--------------------------------------  473 (968)
T ss_pred             EEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccc--------------------------------------
Confidence            999999999999998888999999999999999888776442                                      


Q ss_pred             ccchhhcccccceeEEEcCCCccccccChhhhcccCCCEEecccccccccCCccccccCCCCEEeCCCCcCcccCccccc
Q 046398          596 GSMVEYNSILNLVRIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQIPENIGNLISIESLDFSTNQLSSKISQSMS  675 (794)
Q Consensus       596 ~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~  675 (794)
                               .+.|+.||+++|++++.+|..+..+++|+.|+|++|++++.+|+.++++++|++|+|++|.+++.+|..+.
T Consensus       474 ---------~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~  544 (968)
T PLN00113        474 ---------SKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFS  544 (968)
T ss_pred             ---------cccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHh
Confidence                     13458999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCEEeCcCCcccccCCCC-CccCccCcccccCCCcCC
Q 046398          676 SLSFLNHLNVSNNLLTGKIPSS-TQLQSFDASCFVGNNLCG  715 (794)
Q Consensus       676 ~l~~L~~L~ls~N~l~g~iP~~-~~~~~~~~~~~~gn~lcg  715 (794)
                      .+++|+.|++++|+++|.+|.. ..+..+....+.+|.+.|
T Consensus       545 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~  585 (968)
T PLN00113        545 EMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHG  585 (968)
T ss_pred             CcccCCEEECCCCcccccCChhHhcCcccCEEeccCCccee
Confidence            9999999999999999999975 445666777788886665

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=100.00  E-value=8e-41  Score=329.84  Aligned_cols=486  Identities=26%  Similarity=0.410  Sum_probs=349.4

Q ss_pred             ccccccceeecccccCCCCCCEEeCCCCCCCCCCCCcccCCCCCCCEEEcCCCCCCCCCcccccCCccccccccCccccc
Q 046398          100 YMRSMLSGNVNPSLVDLKHLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRCLDLSWSEYA  179 (794)
Q Consensus       100 ~~~~~l~g~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~~~~~  179 (794)
                      +..|.+. .+.+.+.++..|++|++++|++.  ++|+.++.+..++.|+.++|+++ .+|+.++.+.+|+.|+.++|...
T Consensus        52 ls~N~l~-~l~~dl~nL~~l~vl~~~~n~l~--~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~n~~~  127 (565)
T KOG0472|consen   52 LSHNDLE-VLREDLKNLACLTVLNVHDNKLS--QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCSSNELK  127 (565)
T ss_pred             hccCchh-hccHhhhcccceeEEEeccchhh--hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhcccccee
Confidence            3334433 34556788888999999999888  57888888888999999999887 78888888999999999888765


Q ss_pred             cccccccccccCCCCccCCCCCCCEEECcCCCCCCCCCccccCCCCCCeEeeeccCCCCCCCccccCCCCCCcEEEccCC
Q 046398          180 LQVHSFSWLSGQIPNRLGNLTSLRHLDLSANKFNSTTAGWLSKFNHLEFLSLSSNGLQGTISSIGLENLTSIKTIDLSLN  259 (794)
Q Consensus       180 ~~~~~~~~~~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~~  259 (794)
                                 .+|++++.+..|..++..+|+++..++ .+..+.+|..+++.+|.+. ..|...+. ++.|++++..  
T Consensus       128 -----------el~~~i~~~~~l~dl~~~~N~i~slp~-~~~~~~~l~~l~~~~n~l~-~l~~~~i~-m~~L~~ld~~--  191 (565)
T KOG0472|consen  128 -----------ELPDSIGRLLDLEDLDATNNQISSLPE-DMVNLSKLSKLDLEGNKLK-ALPENHIA-MKRLKHLDCN--  191 (565)
T ss_pred             -----------ecCchHHHHhhhhhhhccccccccCch-HHHHHHHHHHhhccccchh-hCCHHHHH-HHHHHhcccc--
Confidence                       788888888889999888888876544 4778888888888888887 44442343 8888888874  


Q ss_pred             CCCCCCCchhhhccCCCCEEEccCCCCCcchHHHHHhhhhcCcCCccEEEeecccccccccccccCCCCCCEEEccCCcC
Q 046398          260 FELGGPIPTSFVRLCELTSIDVSDVKLSQDLSQVLDILSACGASALESLVFSSSQISGHLTSQLGQFKSLRTLSLDDNCI  339 (794)
Q Consensus       260 ~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l  339 (794)
                      .+.-+.+|+.++.+.+|..|++.+|++....  .+.     +++.|++++++.|+|.-...+...+++++.+||+.+|++
T Consensus       192 ~N~L~tlP~~lg~l~~L~~LyL~~Nki~~lP--ef~-----gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNkl  264 (565)
T KOG0472|consen  192 SNLLETLPPELGGLESLELLYLRRNKIRFLP--EFP-----GCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKL  264 (565)
T ss_pred             hhhhhcCChhhcchhhhHHHHhhhcccccCC--CCC-----ccHHHHHHHhcccHHHhhHHHHhcccccceeeecccccc
Confidence            3456778888888888888888888876422  222     333788888888887754444555788888888888888


Q ss_pred             cCCCCCCcCCCCCCCEEEccCCcccccCCccccCCCCCCeEeccCcccccccChhhhcCCC--CCCEEECcCCcceeEcC
Q 046398          340 SGPLPPALGDLSSLTRLDLSRNMLNGSIPLSLGKISHLEYLDLSNNKMNGTLSEIHFVNLT--KLTWFSASGNSLILQVN  417 (794)
Q Consensus       340 ~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~--~L~~L~ls~n~l~~~~~  417 (794)
                      + ..|+.+.-+.+|++||+++|.++ .+|..++++ .|+.|.+.+|.+. ++....+..-+  -|++|.=   .+...  
T Consensus       265 k-e~Pde~clLrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlr-TiRr~ii~~gT~~vLKyLrs---~~~~d--  335 (565)
T KOG0472|consen  265 K-EVPDEICLLRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLR-TIRREIISKGTQEVLKYLRS---KIKDD--  335 (565)
T ss_pred             c-cCchHHHHhhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchH-HHHHHHHcccHHHHHHHHHH---hhccC--
Confidence            7 67787888888888888888887 567778888 7888888888775 33221111100  0111100   00000  


Q ss_pred             CCCcCccccceEeccccc-CCCCCCcccCCCCCCCEEeccCCCCCCCcchhHHhccccceeccCcccCCCCCCCEEEccC
Q 046398          418 PNWVPPFQLKTLLLMSCH-LGPQFPSWLHSQKNLSVLDISNARISDTIPRWFWNSIFQLSGIIPESFKNFSNLEVLNLGD  496 (794)
Q Consensus       418 ~~~~~~~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~l~~~~p~~l~~l~~L~~L~Ls~  496 (794)
                       .....   +.=.-..-. ..+.+| ......+.+.|+++.-+++. +|...|..            +.-.-....+++.
T Consensus       336 -glS~s---e~~~e~~~t~~~~~~~-~~~~~i~tkiL~~s~~qlt~-VPdEVfea------------~~~~~Vt~Vnfsk  397 (565)
T KOG0472|consen  336 -GLSQS---EGGTETAMTLPSESFP-DIYAIITTKILDVSDKQLTL-VPDEVFEA------------AKSEIVTSVNFSK  397 (565)
T ss_pred             -CCCCC---cccccccCCCCCCccc-chhhhhhhhhhccccccccc-CCHHHHHH------------hhhcceEEEeccc
Confidence             00000   000000000 001112 23445678889999888885 34333321            0112367899999


Q ss_pred             CcccccCChhhhhcCCCCcE-EEcccccccccCCccccCCCCCCEEEccCCcCcccCCchhhccccccccccccCCCCcc
Q 046398          497 NEFVGKIPTWMGEGFTSLLI-LILRSNKFDGFLPIQLCRLTSLQILDVANNSLSGTMPGCVNNFSAMATIDSSHQSNAMS  575 (794)
Q Consensus       497 n~l~~~ip~~~~~~l~~L~~-L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~  575 (794)
                      |++. ++|..+.. +..+.+ +.+++|.+ +.+|..++.+++|..|++++|.+. .+|..++.+..|             
T Consensus       398 NqL~-elPk~L~~-lkelvT~l~lsnn~i-sfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~L-------------  460 (565)
T KOG0472|consen  398 NQLC-ELPKRLVE-LKELVTDLVLSNNKI-SFVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRL-------------  460 (565)
T ss_pred             chHh-hhhhhhHH-HHHHHHHHHhhcCcc-ccchHHHHhhhcceeeecccchhh-hcchhhhhhhhh-------------
Confidence            9998 89987763 444444 55555555 488899999999999999999886 677776655444             


Q ss_pred             cccccccccccceeeEEEEeccchhhcccccceeEEEcCCCccccccChhhhcccCCCEEecccccccccCCccccccCC
Q 046398          576 YFEVTAYDCEVLEDASIVMKGSMVEYNSILNLVRIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQIPENIGNLIS  655 (794)
Q Consensus       576 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~  655 (794)
                                                       +.||+|+|+|. .+|..+..+..++.+-.++|++....|+.++++.+
T Consensus       461 ---------------------------------q~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~n  506 (565)
T KOG0472|consen  461 ---------------------------------QTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRN  506 (565)
T ss_pred             ---------------------------------heecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhh
Confidence                                             88999999998 89999988888888888889999666677999999


Q ss_pred             CCEEeCCCCcCcccCcccccCCCCCCEEeCcCCccc
Q 046398          656 IESLDFSTNQLSSKISQSMSSLSFLNHLNVSNNLLT  691 (794)
Q Consensus       656 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~  691 (794)
                      |.+|||.+|.+. .+|..++++++|++|++.+|++.
T Consensus       507 L~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  507 LTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR  541 (565)
T ss_pred             cceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence            999999999998 58889999999999999999998

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=1.7e-36  Score=312.22  Aligned_cols=369  Identities=24%  Similarity=0.274  Sum_probs=291.0

Q ss_pred             CCEEECcCCCCCCCCCccccCCCCCCeEeeeccCCCCCCCccccCCCCCCcEEEccCCCCCCCCCchhhhccCCCCEEEc
Q 046398          202 LRHLDLSANKFNSTTAGWLSKFNHLEFLSLSSNGLQGTISSIGLENLTSIKTIDLSLNFELGGPIPTSFVRLCELTSIDV  281 (794)
Q Consensus       202 L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l  281 (794)
                      -+.||+++|+++...+..|.++++|+++++..|.++ .||.                          ......+|+.|+|
T Consensus        80 t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~--------------------------f~~~sghl~~L~L  132 (873)
T KOG4194|consen   80 TQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPR--------------------------FGHESGHLEKLDL  132 (873)
T ss_pred             eeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hccc--------------------------ccccccceeEEee
Confidence            456888888888887777778888888888777776 4544                          2223334666666


Q ss_pred             cCCCCCcchHHHHHhhhhcCcCCccEEEeecccccccccccccCCCCCCEEEccCCcCcCCCCCCcCCCCCCCEEEccCC
Q 046398          282 SDVKLSQDLSQVLDILSACGASALESLVFSSSQISGHLTSQLGQFKSLRTLSLDDNCISGPLPPALGDLSSLTRLDLSRN  361 (794)
Q Consensus       282 ~~~~l~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n  361 (794)
                      .+|.++....+.+..+.     .|+.|||+.|.|+......|..-.++++|+|++|.|+......|.++.+|..|.|++|
T Consensus       133 ~~N~I~sv~se~L~~l~-----alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrN  207 (873)
T KOG4194|consen  133 RHNLISSVTSEELSALP-----ALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRN  207 (873)
T ss_pred             eccccccccHHHHHhHh-----hhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccC
Confidence            67777666666666666     7888888888888776677777788999999999998887888888899999999999


Q ss_pred             cccccCCccccCCCCCCeEeccCcccccccChhhhcCCCCCCEEECcCCcceeEcCCCCcCccccceEecccccCCCCCC
Q 046398          362 MLNGSIPLSLGKISHLEYLDLSNNKMNGTLSEIHFVNLTKLTWFSASGNSLILQVNPNWVPPFQLKTLLLMSCHLGPQFP  441 (794)
Q Consensus       362 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~  441 (794)
                      +++...+..|.++++|+.|+|..|+|. .+....|.++++|+.+.+..|.+.......|..+.++++|+|..|++...-.
T Consensus       208 rittLp~r~Fk~L~~L~~LdLnrN~ir-ive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~  286 (873)
T KOG4194|consen  208 RITTLPQRSFKRLPKLESLDLNRNRIR-IVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNE  286 (873)
T ss_pred             cccccCHHHhhhcchhhhhhcccccee-eehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhc
Confidence            998666677888999999999999987 5656688999999999999999888888888888889999999988888888


Q ss_pred             cccCCCCCCCEEeccCCCCCCCcchhHHhccccceeccCcccCCCCCCCEEEccCCcccccCChhhhhcCCCCcEEEccc
Q 046398          442 SWLHSQKNLSVLDISNARISDTIPRWFWNSIFQLSGIIPESFKNFSNLEVLNLGDNEFVGKIPTWMGEGFTSLLILILRS  521 (794)
Q Consensus       442 ~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~  521 (794)
                      .|+-+++.|+.|++|+|.|..               +-++.+..+++|++|+|++|+++ .+++.-+..+..|++|+|++
T Consensus       287 g~lfgLt~L~~L~lS~NaI~r---------------ih~d~WsftqkL~~LdLs~N~i~-~l~~~sf~~L~~Le~LnLs~  350 (873)
T KOG4194|consen  287 GWLFGLTSLEQLDLSYNAIQR---------------IHIDSWSFTQKLKELDLSSNRIT-RLDEGSFRVLSQLEELNLSH  350 (873)
T ss_pred             ccccccchhhhhccchhhhhe---------------eecchhhhcccceeEeccccccc-cCChhHHHHHHHhhhhcccc
Confidence            888889999999999998775               35667788889999999999998 67776666788999999999


Q ss_pred             ccccccCCccccCCCCCCEEEccCCcCcccCCchhhccccccccccccCCCCcccccccccccccceeeEEEEeccchhh
Q 046398          522 NKFDGFLPIQLCRLTSLQILDVANNSLSGTMPGCVNNFSAMATIDSSHQSNAMSYFEVTAYDCEVLEDASIVMKGSMVEY  601 (794)
Q Consensus       522 n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  601 (794)
                      |.++..-...|..+++|+.|||++|.++..+.+.-.-+                                          
T Consensus       351 Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f------------------------------------------  388 (873)
T KOG4194|consen  351 NSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAF------------------------------------------  388 (873)
T ss_pred             cchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhh------------------------------------------
Confidence            99887767778888999999999998886665422111                                          


Q ss_pred             cccccceeEEEcCCCccccccChhhhcccCCCEEecccccccccCCccccccCCCCEEeCCC
Q 046398          602 NSILNLVRIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQIPENIGNLISIESLDFST  663 (794)
Q Consensus       602 ~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~  663 (794)
                       ..++.|+.|++.+|++..+....|..+.+|++|||.+|.|....|++|..+ .|+.|.+..
T Consensus       389 -~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nS  448 (873)
T KOG4194|consen  389 -NGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNS  448 (873)
T ss_pred             -ccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcc
Confidence             114555778888888876656677888888888888888877777888777 777776654

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=1.4e-36  Score=312.79  Aligned_cols=367  Identities=24%  Similarity=0.224  Sum_probs=191.5

Q ss_pred             EEEcCCCCCCCCCcccccCCccccccccCccccccccccccccccCCCCccCCCCCCCEEECcCCCCCCCCCccccCCCC
Q 046398          146 YLNLSGAEFAGIIPHQLGNLSNLRCLDLSWSEYALQVHSFSWLSGQIPNRLGNLTSLRHLDLSANKFNSTTAGWLSKFNH  225 (794)
Q Consensus       146 ~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~  225 (794)
                      .||+++|++...-+..|.++++|+.+++.+|...           .+|.......+|+.|+|.+|.|+....+.+..++.
T Consensus        82 ~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-----------~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~a  150 (873)
T KOG4194|consen   82 TLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-----------RIPRFGHESGHLEKLDLRHNLISSVTSEELSALPA  150 (873)
T ss_pred             eeeccccccccCcHHHHhcCCcceeeeeccchhh-----------hcccccccccceeEEeeeccccccccHHHHHhHhh
Confidence            3444444444444444444444444444443332           34444444444444444444444444444444444


Q ss_pred             CCeEeeeccCCCCCCCccccCCCCCCcEEEccCCCCCCCCCchhhhccCCCCEEEccCCCCCcchHHHHHhhhhcCcCCc
Q 046398          226 LEFLSLSSNGLQGTISSIGLENLTSIKTIDLSLNFELGGPIPTSFVRLCELTSIDVSDVKLSQDLSQVLDILSACGASAL  305 (794)
Q Consensus       226 L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~l~~l~~~~~~~L  305 (794)
                      |+.|||+.|.++ .++...+..-.++++|+|+ +|.++..-...|..+.+|..|.|+.|+++...+..+..+.     .|
T Consensus       151 lrslDLSrN~is-~i~~~sfp~~~ni~~L~La-~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~-----~L  223 (873)
T KOG4194|consen  151 LRSLDLSRNLIS-EIPKPSFPAKVNIKKLNLA-SNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLP-----KL  223 (873)
T ss_pred             hhhhhhhhchhh-cccCCCCCCCCCceEEeec-cccccccccccccccchheeeecccCcccccCHHHhhhcc-----hh
Confidence            444444444444 3333333333444444444 3333333333344444444444444444433333333333     44


Q ss_pred             cEEEeecccccccccccccCCCCCCEEEccCCcCcCCCCCCcCCCCCCCEEEccCCcccccCCccccCCCCCCeEeccCc
Q 046398          306 ESLVFSSSQISGHLTSQLGQFKSLRTLSLDDNCISGPLPPALGDLSSLTRLDLSRNMLNGSIPLSLGKISHLEYLDLSNN  385 (794)
Q Consensus       306 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N  385 (794)
                      +.|+|..|+|.-.--..|..+++|+.|.+..|.+...-...|..+.++++|+|+.|+++..-..++.++++|+.|++++|
T Consensus       224 ~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~N  303 (873)
T KOG4194|consen  224 ESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYN  303 (873)
T ss_pred             hhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchh
Confidence            44444444443322333444444445555555444333344444444555555555444333344444445555555555


Q ss_pred             ccccccChhhhcCCCCCCEEECcCCcceeEcCCCCcCccccceEecccccCCCCCCcccCCCCCCCEEeccCCCCCCCcc
Q 046398          386 KMNGTLSEIHFVNLTKLTWFSASGNSLILQVNPNWVPPFQLKTLLLMSCHLGPQFPSWLHSQKNLSVLDISNARISDTIP  465 (794)
Q Consensus       386 ~l~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p  465 (794)
                      .|. .+....+.-+++|++|+++.|.++...+..+..+.+|++|.|+.|.+...-...|..+++|+.|||++|.++..|.
T Consensus       304 aI~-rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IE  382 (873)
T KOG4194|consen  304 AIQ-RIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIE  382 (873)
T ss_pred             hhh-eeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEe
Confidence            444 3333344444445555555554444444444444455555555555544445556677777778888877765433


Q ss_pred             hhHHhccccceeccCcccCCCCCCCEEEccCCcccccCChhhhhcCCCCcEEEcccccccccCCccccCCCCCCEEEccC
Q 046398          466 RWFWNSIFQLSGIIPESFKNFSNLEVLNLGDNEFVGKIPTWMGEGFTSLLILILRSNKFDGFLPIQLCRLTSLQILDVAN  545 (794)
Q Consensus       466 ~~~~~~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~  545 (794)
                      +            -...|..+++|+.|++.+|++. .||...+.++++|+.|+|.+|.+..+-|.+|..+ .|++|.++.
T Consensus       383 D------------aa~~f~gl~~LrkL~l~gNqlk-~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nS  448 (873)
T KOG4194|consen  383 D------------AAVAFNGLPSLRKLRLTGNQLK-SIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNS  448 (873)
T ss_pred             c------------chhhhccchhhhheeecCceee-ecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcc
Confidence            2            2234667888888888888887 7887777788888888888888887778888877 777776654

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=100.00  E-value=8.8e-40  Score=322.52  Aligned_cols=465  Identities=24%  Similarity=0.355  Sum_probs=350.2

Q ss_pred             hhhhccccccceeecccccCCCCCCEEeCCCCCCCCCCCCcccCCCCCCCEEEcCCCCCCCCCcccccCCccccccccCc
Q 046398           96 EYEDYMRSMLSGNVNPSLVDLKHLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRCLDLSW  175 (794)
Q Consensus        96 ~~~~~~~~~l~g~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~  175 (794)
                      ..+....+.++ ++|++++++..++.|+.++|+++  ++|+.++.+..|+.|+.++|.+. .+|++++.+..|+.|+..+
T Consensus        71 ~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls--~lp~~i~s~~~l~~l~~s~n~~~-el~~~i~~~~~l~dl~~~~  146 (565)
T KOG0472|consen   71 TVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS--ELPEQIGSLISLVKLDCSSNELK-ELPDSIGRLLDLEDLDATN  146 (565)
T ss_pred             eEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh--hccHHHhhhhhhhhhhcccccee-ecCchHHHHhhhhhhhccc
Confidence            34445555654 57889999999999999999999  68999999999999999999998 7889999999999999998


Q ss_pred             cccccccccccccccCCCCccCCCCCCCEEECcCCCCCCCCCccccCCCCCCeEeeeccCCCCCCCccccCCCCCCcEEE
Q 046398          176 SEYALQVHSFSWLSGQIPNRLGNLTSLRHLDLSANKFNSTTAGWLSKFNHLEFLSLSSNGLQGTISSIGLENLTSIKTID  255 (794)
Q Consensus       176 ~~~~~~~~~~~~~~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~  255 (794)
                      |++.           .+|..++++.+|..+++.+|++....|..+. |+.|++|+...|.+. .+|. .++.+.+|+.|+
T Consensus       147 N~i~-----------slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~-m~~L~~ld~~~N~L~-tlP~-~lg~l~~L~~Ly  212 (565)
T KOG0472|consen  147 NQIS-----------SLPEDMVNLSKLSKLDLEGNKLKALPENHIA-MKRLKHLDCNSNLLE-TLPP-ELGGLESLELLY  212 (565)
T ss_pred             cccc-----------cCchHHHHHHHHHHhhccccchhhCCHHHHH-HHHHHhcccchhhhh-cCCh-hhcchhhhHHHH
Confidence            8876           7899999999999999999999998888777 999999999999887 7888 899999999999


Q ss_pred             ccCCCCCCCCCchhhhccCCCCEEEccCCCCCcchHHHHHhhhhcCcCCccEEEeecccccccccccccCCCCCCEEEcc
Q 046398          256 LSLNFELGGPIPTSFVRLCELTSIDVSDVKLSQDLSQVLDILSACGASALESLVFSSSQISGHLTSQLGQFKSLRTLSLD  335 (794)
Q Consensus       256 L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~  335 (794)
                      +. .|.+. .+| .|..+..|++++++.|.+.-...+....+.     ++..||+.+|+++. .|..+.-+++|..||++
T Consensus       213 L~-~Nki~-~lP-ef~gcs~L~Elh~g~N~i~~lpae~~~~L~-----~l~vLDLRdNklke-~Pde~clLrsL~rLDlS  283 (565)
T KOG0472|consen  213 LR-RNKIR-FLP-EFPGCSLLKELHVGENQIEMLPAEHLKHLN-----SLLVLDLRDNKLKE-VPDEICLLRSLERLDLS  283 (565)
T ss_pred             hh-hcccc-cCC-CCCccHHHHHHHhcccHHHhhHHHHhcccc-----cceeeecccccccc-CchHHHHhhhhhhhccc
Confidence            98 44443 345 889999999999999988754444444554     99999999999985 67888889999999999


Q ss_pred             CCcCcCCCCCCcCCCCCCCEEEccCCcccccCCccccCCC---CCCeEeccCcccccccChhhhcCCCCCCEEECcCCcc
Q 046398          336 DNCISGPLPPALGDLSSLTRLDLSRNMLNGSIPLSLGKIS---HLEYLDLSNNKMNGTLSEIHFVNLTKLTWFSASGNSL  412 (794)
Q Consensus       336 ~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~---~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~ls~n~l  412 (794)
                      +|.++ .+|..++++ .|+.|-+.+|.+.. +-..+-+..   -|++|.=   .+...-+...  .-.+-..-+.     
T Consensus       284 NN~is-~Lp~sLgnl-hL~~L~leGNPlrT-iRr~ii~~gT~~vLKyLrs---~~~~dglS~s--e~~~e~~~t~-----  350 (565)
T KOG0472|consen  284 NNDIS-SLPYSLGNL-HLKFLALEGNPLRT-IRREIISKGTQEVLKYLRS---KIKDDGLSQS--EGGTETAMTL-----  350 (565)
T ss_pred             CCccc-cCCcccccc-eeeehhhcCCchHH-HHHHHHcccHHHHHHHHHH---hhccCCCCCC--cccccccCCC-----
Confidence            99999 578889999 99999999999863 222222211   1333321   1110000000  0000000000     


Q ss_pred             eeEcCCCCcCccccceEecccccCCCCCCcccCC--CCCCCEEeccCCCCCCCcchhHHhccccceeccCcccCCCCCCC
Q 046398          413 ILQVNPNWVPPFQLKTLLLMSCHLGPQFPSWLHS--QKNLSVLDISNARISDTIPRWFWNSIFQLSGIIPESFKNFSNLE  490 (794)
Q Consensus       413 ~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~--l~~L~~L~Ls~n~l~~~~p~~~~~~~~~l~~~~p~~l~~l~~L~  490 (794)
                      .....++.....+.+.|++++-+++....+.|..  -.-.+.++++.|++.+                +|..+..+..+.
T Consensus       351 ~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~e----------------lPk~L~~lkelv  414 (565)
T KOG0472|consen  351 PSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCE----------------LPKRLVELKELV  414 (565)
T ss_pred             CCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhh----------------hhhhhHHHHHHH
Confidence            0000011122235566666666665433332322  2237889999999875                666665555554


Q ss_pred             -EEEccCCcccccCChhhhhcCCCCcEEEcccccccccCCccccCCCCCCEEEccCCcCcccCCchhhcccccccccccc
Q 046398          491 -VLNLGDNEFVGKIPTWMGEGFTSLLILILRSNKFDGFLPIQLCRLTSLQILDVANNSLSGTMPGCVNNFSAMATIDSSH  569 (794)
Q Consensus       491 -~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~  569 (794)
                       .+.+++|.+. -+|..+. .+++|..|+|++|.+. .+|..++.+..|+.||++.|++. .+|.+...+..+       
T Consensus       415 T~l~lsnn~is-fv~~~l~-~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~l-------  483 (565)
T KOG0472|consen  415 TDLVLSNNKIS-FVPLELS-QLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTL-------  483 (565)
T ss_pred             HHHHhhcCccc-cchHHHH-hhhcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHH-------
Confidence             4566677664 6666665 7999999999999887 67889999999999999999887 667665443333       


Q ss_pred             CCCCcccccccccccccceeeEEEEeccchhhcccccceeEEEcCCCccccccChhhhcccCCCEEecccccccccCCcc
Q 046398          570 QSNAMSYFEVTAYDCEVLEDASIVMKGSMVEYNSILNLVRIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQIPEN  649 (794)
Q Consensus       570 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~  649 (794)
                                                             +.+-.++|++....|..++++.+|..|||.+|.+. .||..
T Consensus       484 ---------------------------------------Etllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~  523 (565)
T KOG0472|consen  484 ---------------------------------------ETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPI  523 (565)
T ss_pred             ---------------------------------------HHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChh
Confidence                                                   44556678888666666999999999999999998 89999


Q ss_pred             ccccCCCCEEeCCCCcCc
Q 046398          650 IGNLISIESLDFSTNQLS  667 (794)
Q Consensus       650 l~~l~~L~~L~Ls~N~l~  667 (794)
                      ++++++|+.|+|++|++.
T Consensus       524 LgnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  524 LGNMTNLRHLELDGNPFR  541 (565)
T ss_pred             hccccceeEEEecCCccC
Confidence            999999999999999998

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=100.00  E-value=1.5e-35  Score=321.43  Aligned_cols=465  Identities=27%  Similarity=0.341  Sum_probs=260.5

Q ss_pred             CCCCCCEEeCCCCCCCCCCCCcccCCCCCCCEEEcCCCCCCCCCcccccCCccccccccCccccccccccccccccCCCC
Q 046398          115 DLKHLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRCLDLSWSEYALQVHSFSWLSGQIPN  194 (794)
Q Consensus       115 ~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~~~~lp~  194 (794)
                      +.-+|+.||+++|.+.  ++|..+..+.+|+.|+++.|.|. ..|.+..++.+|++|.|..|...           .+|.
T Consensus        43 ~~v~L~~l~lsnn~~~--~fp~~it~l~~L~~ln~s~n~i~-~vp~s~~~~~~l~~lnL~~n~l~-----------~lP~  108 (1081)
T KOG0618|consen   43 KRVKLKSLDLSNNQIS--SFPIQITLLSHLRQLNLSRNYIR-SVPSSCSNMRNLQYLNLKNNRLQ-----------SLPA  108 (1081)
T ss_pred             heeeeEEeeccccccc--cCCchhhhHHHHhhcccchhhHh-hCchhhhhhhcchhheeccchhh-----------cCch
Confidence            3444888888888887  46777888888888888888877 67777888888888888776654           6788


Q ss_pred             ccCCCCCCCEEECcCCCCCCCCCccccCCCCCCeEeeeccCCCCCCCccccCCCCCCcEEEccCCCCCCCCCchhhhccC
Q 046398          195 RLGNLTSLRHLDLSANKFNSTTAGWLSKFNHLEFLSLSSNGLQGTISSIGLENLTSIKTIDLSLNFELGGPIPTSFVRLC  274 (794)
Q Consensus       195 ~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~~~~~~~~~~~~l~~l~  274 (794)
                      ++..+.+|+.||+++|++.. .|..+..+..++.+..++|....     .++... ++.+++. .+.+.+.++..+..++
T Consensus       109 ~~~~lknl~~LdlS~N~f~~-~Pl~i~~lt~~~~~~~s~N~~~~-----~lg~~~-ik~~~l~-~n~l~~~~~~~i~~l~  180 (1081)
T KOG0618|consen  109 SISELKNLQYLDLSFNHFGP-IPLVIEVLTAEEELAASNNEKIQ-----RLGQTS-IKKLDLR-LNVLGGSFLIDIYNLT  180 (1081)
T ss_pred             hHHhhhcccccccchhccCC-CchhHHhhhHHHHHhhhcchhhh-----hhcccc-chhhhhh-hhhcccchhcchhhhh
Confidence            88888888888888888744 45557777777777777772111     122222 6666666 4456666666666665


Q ss_pred             CCCEEEccCCCCCcchHHHHHhhhhcCcCCccEEEeecccccccccccccCCCCCCEEEccCCcCcCCCCCCcCCCCCCC
Q 046398          275 ELTSIDVSDVKLSQDLSQVLDILSACGASALESLVFSSSQISGHLTSQLGQFKSLRTLSLDDNCISGPLPPALGDLSSLT  354 (794)
Q Consensus       275 ~L~~L~l~~~~l~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~  354 (794)
                      .  .+++.+|.+..   ..+..+     +.|+.|....|++....-    .-++|+.|+.++|.++...+.  .--.+|+
T Consensus       181 ~--~ldLr~N~~~~---~dls~~-----~~l~~l~c~rn~ls~l~~----~g~~l~~L~a~~n~l~~~~~~--p~p~nl~  244 (1081)
T KOG0618|consen  181 H--QLDLRYNEMEV---LDLSNL-----ANLEVLHCERNQLSELEI----SGPSLTALYADHNPLTTLDVH--PVPLNLQ  244 (1081)
T ss_pred             e--eeecccchhhh---hhhhhc-----cchhhhhhhhcccceEEe----cCcchheeeeccCcceeeccc--cccccce
Confidence            5  67777777651   112222     266666666666654221    235677777777777633222  1234677


Q ss_pred             EEEccCCcccccCCccccCCCCCCeEeccCcccccccChhhhcCCCCCCEEECcCCcceeEcCCCCcCccccceEecccc
Q 046398          355 RLDLSRNMLNGSIPLSLGKISHLEYLDLSNNKMNGTLSEIHFVNLTKLTWFSASGNSLILQVNPNWVPPFQLKTLLLMSC  434 (794)
Q Consensus       355 ~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n  434 (794)
                      ++++++|+++ .+|++++.+.+|+.++..+|++. .+|. ......+|+.+.+..|.+.. +++...+...|++|++..|
T Consensus       245 ~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~-~lp~-ri~~~~~L~~l~~~~nel~y-ip~~le~~~sL~tLdL~~N  320 (1081)
T KOG0618|consen  245 YLDISHNNLS-NLPEWIGACANLEALNANHNRLV-ALPL-RISRITSLVSLSAAYNELEY-IPPFLEGLKSLRTLDLQSN  320 (1081)
T ss_pred             eeecchhhhh-cchHHHHhcccceEecccchhHH-hhHH-HHhhhhhHHHHHhhhhhhhh-CCCcccccceeeeeeehhc
Confidence            7777777776 45677777777777777777775 4554 34455666666666665542 2222233344444444444


Q ss_pred             cCCCCCCcccCCCCC-CCEEeccCCCCCCCcchhHHhccccceeccCc-ccCCCCCCCEEEccCCcccccCChhhhhcCC
Q 046398          435 HLGPQFPSWLHSQKN-LSVLDISNARISDTIPRWFWNSIFQLSGIIPE-SFKNFSNLEVLNLGDNEFVGKIPTWMGEGFT  512 (794)
Q Consensus       435 ~l~~~~~~~l~~l~~-L~~L~Ls~n~l~~~~p~~~~~~~~~l~~~~p~-~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~  512 (794)
                      ++....+..+.-... |..|+.+.|++..                .|. .=...+.|+.|.+.+|.+++..-..+- ++.
T Consensus       321 ~L~~lp~~~l~v~~~~l~~ln~s~n~l~~----------------lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~-~~~  383 (1081)
T KOG0618|consen  321 NLPSLPDNFLAVLNASLNTLNVSSNKLST----------------LPSYEENNHAALQELYLANNHLTDSCFPVLV-NFK  383 (1081)
T ss_pred             cccccchHHHhhhhHHHHHHhhhhccccc----------------cccccchhhHHHHHHHHhcCcccccchhhhc-ccc
Confidence            443222222222221 3333333333332                110 001233455555555555544333232 455


Q ss_pred             CCcEEEcccccccccCCccccCCCCCCEEEccCCcCcccCCchhhccccccccccccCCCCcccccccccccccceeeEE
Q 046398          513 SLLILILRSNKFDGFLPIQLCRLTSLQILDVANNSLSGTMPGCVNNFSAMATIDSSHQSNAMSYFEVTAYDCEVLEDASI  592 (794)
Q Consensus       513 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~  592 (794)
                      .|++|+|++|++.......+.+++.|+.|+||+|+++ .+|.+..++..|                              
T Consensus       384 hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L------------------------------  432 (1081)
T KOG0618|consen  384 HLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRL------------------------------  432 (1081)
T ss_pred             ceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhh------------------------------
Confidence            5555555555555444444555555555555555555 444544444444                              


Q ss_pred             EEeccchhhcccccceeEEEcCCCccccccChhhhcccCCCEEecccccccccC-CccccccCCCCEEeCCCCcCcccCc
Q 046398          593 VMKGSMVEYNSILNLVRIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQI-PENIGNLISIESLDFSTNQLSSKIS  671 (794)
Q Consensus       593 ~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~i-p~~l~~l~~L~~L~Ls~N~l~~~~p  671 (794)
                                      ++|...+|++. ..| ++.+++.|+.+|+|.|+++... |.... -++|++|||++|.-...--
T Consensus       433 ----------------~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p-~p~LkyLdlSGN~~l~~d~  493 (1081)
T KOG0618|consen  433 ----------------HTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALP-SPNLKYLDLSGNTRLVFDH  493 (1081)
T ss_pred             ----------------HHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCC-CcccceeeccCCcccccch
Confidence                            33334444544 344 5555556666666665554321 22211 1555566666555333333


Q ss_pred             ccccCCCCCCEEeCcCC
Q 046398          672 QSMSSLSFLNHLNVSNN  688 (794)
Q Consensus       672 ~~l~~l~~L~~L~ls~N  688 (794)
                      ..|..+.++...++.-|
T Consensus       494 ~~l~~l~~l~~~~i~~~  510 (1081)
T KOG0618|consen  494 KTLKVLKSLSQMDITLN  510 (1081)
T ss_pred             hhhHHhhhhhheecccC
Confidence            44444444444444444

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.97  E-value=3.4e-34  Score=296.84  Aligned_cols=398  Identities=28%  Similarity=0.416  Sum_probs=271.8

Q ss_pred             CCCCCEEeCCCCCCCCCCCCcccCCCCCCCEEEcCCCCCCCCCcccccCCccccccccCccccccccccccccccCCCCc
Q 046398          116 LKHLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRCLDLSWSEYALQVHSFSWLSGQIPNR  195 (794)
Q Consensus       116 l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~~~~lp~~  195 (794)
                      ++..|-.|+++|.++|..+|.....+++++.|.|...++. .+|+.++.|.+|++|.+++|+..                
T Consensus         6 LpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~----------------   68 (1255)
T KOG0444|consen    6 LPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI----------------   68 (1255)
T ss_pred             cceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH----------------
Confidence            4556667777777776667777777777777777776665 56666666666666666555432                


Q ss_pred             cCCCCCCCEEECcCCCCCCCCCccccCCCCCCeEeeeccCCCCCCCccccCCCCCCcEEEccCCCCCCCCCchhhhccCC
Q 046398          196 LGNLTSLRHLDLSANKFNSTTAGWLSKFNHLEFLSLSSNGLQGTISSIGLENLTSIKTIDLSLNFELGGPIPTSFVRLCE  275 (794)
Q Consensus       196 l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~  275 (794)
                                        .. .+.+..++.|+.+.+..|++.                         ...+|..+.++..
T Consensus        69 ------------------~v-hGELs~Lp~LRsv~~R~N~LK-------------------------nsGiP~diF~l~d  104 (1255)
T KOG0444|consen   69 ------------------SV-HGELSDLPRLRSVIVRDNNLK-------------------------NSGIPTDIFRLKD  104 (1255)
T ss_pred             ------------------hh-hhhhccchhhHHHhhhccccc-------------------------cCCCCchhccccc
Confidence                              21 112344445555555544443                         1235566666666


Q ss_pred             CCEEEccCCCCCcchHHHHHhhhhcCcCCccEEEeecccccccccccccCCCCCCEEEccCCcCcCCCCCCcCCCCCCCE
Q 046398          276 LTSIDVSDVKLSQDLSQVLDILSACGASALESLVFSSSQISGHLTSQLGQFKSLRTLSLDDNCISGPLPPALGDLSSLTR  355 (794)
Q Consensus       276 L~~L~l~~~~l~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~  355 (794)
                      |+.||+++|++.                              ..|..+...+++-.|+|++|+|..+...-+.++..|-.
T Consensus       105 Lt~lDLShNqL~------------------------------EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLf  154 (1255)
T KOG0444|consen  105 LTILDLSHNQLR------------------------------EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLF  154 (1255)
T ss_pred             ceeeecchhhhh------------------------------hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhh
Confidence            666666666554                              23444555566667777777776333333456677777


Q ss_pred             EEccCCcccccCCccccCCCCCCeEeccCcccccccChhhhcCCCCCCEEECcCCcceeEcCCCCcCccccceEeccccc
Q 046398          356 LDLSRNMLNGSIPLSLGKISHLEYLDLSNNKMNGTLSEIHFVNLTKLTWFSASGNSLILQVNPNWVPPFQLKTLLLMSCH  435 (794)
Q Consensus       356 L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~  435 (794)
                      |||++|++. .+|+.+..+..|+.|+|++|.+. ...-..+..+++|+.|.+++.+-+                      
T Consensus       155 LDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~-hfQLrQLPsmtsL~vLhms~TqRT----------------------  210 (1255)
T KOG0444|consen  155 LDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLN-HFQLRQLPSMTSLSVLHMSNTQRT----------------------  210 (1255)
T ss_pred             hccccchhh-hcCHHHHHHhhhhhhhcCCChhh-HHHHhcCccchhhhhhhcccccch----------------------
Confidence            777777776 56666777777777777777664 111112223333444444433211                      


Q ss_pred             CCCCCCcccCCCCCCCEEeccCCCCCCCcchhHHhccccceeccCcccCCCCCCCEEEccCCcccccCChhhhhcCCCCc
Q 046398          436 LGPQFPSWLHSQKNLSVLDISNARISDTIPRWFWNSIFQLSGIIPESFKNFSNLEVLNLGDNEFVGKIPTWMGEGFTSLL  515 (794)
Q Consensus       436 l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~  515 (794)
                       ...+|..+..+.+|..+|+|.|.+..                +|+.+.++++|+.|+||+|+|+ ++..... ...+|+
T Consensus       211 -l~N~Ptsld~l~NL~dvDlS~N~Lp~----------------vPecly~l~~LrrLNLS~N~it-eL~~~~~-~W~~lE  271 (1255)
T KOG0444|consen  211 -LDNIPTSLDDLHNLRDVDLSENNLPI----------------VPECLYKLRNLRRLNLSGNKIT-ELNMTEG-EWENLE  271 (1255)
T ss_pred             -hhcCCCchhhhhhhhhccccccCCCc----------------chHHHhhhhhhheeccCcCcee-eeeccHH-HHhhhh
Confidence             12467788888999999999998874                7888889999999999999998 6665555 478899


Q ss_pred             EEEcccccccccCCccccCCCCCCEEEccCCcCcc-cCCchhhccccccccccccCCCCcccccccccccccceeeEEEE
Q 046398          516 ILILRSNKFDGFLPIQLCRLTSLQILDVANNSLSG-TMPGCVNNFSAMATIDSSHQSNAMSYFEVTAYDCEVLEDASIVM  594 (794)
Q Consensus       516 ~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  594 (794)
                      +|+|+.|+++ .+|.++++++.|+.|.+.+|+++- -+|..++.+..|                                
T Consensus       272 tLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~L--------------------------------  318 (1255)
T KOG0444|consen  272 TLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQL--------------------------------  318 (1255)
T ss_pred             hhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhh--------------------------------
Confidence            9999999998 789999999999999999999863 356666665555                                


Q ss_pred             eccchhhcccccceeEEEcCCCccccccChhhhcccCCCEEecccccccccCCccccccCCCCEEeCCCCcCcccCcccc
Q 046398          595 KGSMVEYNSILNLVRIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQIPENIGNLISIESLDFSTNQLSSKISQSM  674 (794)
Q Consensus       595 ~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l  674 (794)
                                    +++..++|.+. .+|+.++.+..|+.|.|++|++. .+|+.+.-|+.|+.||+..|.-.-..|.--
T Consensus       319 --------------evf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnLVMPPKP~  382 (1255)
T KOG0444|consen  319 --------------EVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNLVMPPKPN  382 (1255)
T ss_pred             --------------HHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCcCccCCCCcc
Confidence                          66778888887 89999999999999999999998 899999999999999999998765555433


Q ss_pred             cCCCCCCEEeCcCC-----cccccCCC
Q 046398          675 SSLSFLNHLNVSNN-----LLTGKIPS  696 (794)
Q Consensus       675 ~~l~~L~~L~ls~N-----~l~g~iP~  696 (794)
                      ..-++|+.-++..-     .+.|..|.
T Consensus       383 da~~~lefYNIDFSLq~QlrlAG~~pa  409 (1255)
T KOG0444|consen  383 DARKKLEFYNIDFSLQHQLRLAGQMPA  409 (1255)
T ss_pred             hhhhcceeeecceehhhHHhhccCCcc
Confidence            33356766655532     34565553

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.97  E-value=2e-34  Score=312.80  Aligned_cols=474  Identities=22%  Similarity=0.295  Sum_probs=380.2

Q ss_pred             eecccccCCCCCCEEeCCCCCCCCCCCCcccCCCCCCCEEEcCCCCCCCCCcccccCCccccccccCccccccccccccc
Q 046398          108 NVNPSLVDLKHLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRCLDLSWSEYALQVHSFSW  187 (794)
Q Consensus       108 ~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~~~~~~~~~~~~~  187 (794)
                      .+|..+..-..++.|+++.|-+-..+ -+++.+..+|+.||+++|.+. ..|..+..+.+|+.|+++.|.+.        
T Consensus        12 ~ip~~i~~~~~~~~ln~~~N~~l~~p-l~~~~~~v~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i~--------   81 (1081)
T KOG0618|consen   12 LIPEQILNNEALQILNLRRNSLLSRP-LEFVEKRVKLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYIR--------   81 (1081)
T ss_pred             ccchhhccHHHHHhhhccccccccCc-hHHhhheeeeEEeeccccccc-cCCchhhhHHHHhhcccchhhHh--------
Confidence            45666666667999999999877432 234455666999999999987 78999999999999999998876        


Q ss_pred             cccCCCCccCCCCCCCEEECcCCCCCCCCCccccCCCCCCeEeeeccCCCCCCCccccCCCCCCcEEEccCCCCCCCCCc
Q 046398          188 LSGQIPNRLGNLTSLRHLDLSANKFNSTTAGWLSKFNHLEFLSLSSNGLQGTISSIGLENLTSIKTIDLSLNFELGGPIP  267 (794)
Q Consensus       188 ~~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~~~~~~~~~~  267 (794)
                         .+|.+..++.+|++|.|.+|.+. ..|..+..+++|++|+++.|.+. .+|. .+..++.++.+..++| ....   
T Consensus        82 ---~vp~s~~~~~~l~~lnL~~n~l~-~lP~~~~~lknl~~LdlS~N~f~-~~Pl-~i~~lt~~~~~~~s~N-~~~~---  151 (1081)
T KOG0618|consen   82 ---SVPSSCSNMRNLQYLNLKNNRLQ-SLPASISELKNLQYLDLSFNHFG-PIPL-VIEVLTAEEELAASNN-EKIQ---  151 (1081)
T ss_pred             ---hCchhhhhhhcchhheeccchhh-cCchhHHhhhcccccccchhccC-CCch-hHHhhhHHHHHhhhcc-hhhh---
Confidence               78899999999999999999875 45677999999999999999997 6777 7788888888888844 2222   


Q ss_pred             hhhhccCCCCEEEccCCCCCcchHHHHHhhhhcCcCCccEEEeecccccccccccccCCCCCCEEEccCCcCcCCCCCCc
Q 046398          268 TSFVRLCELTSIDVSDVKLSQDLSQVLDILSACGASALESLVFSSSQISGHLTSQLGQFKSLRTLSLDDNCISGPLPPAL  347 (794)
Q Consensus       268 ~~l~~l~~L~~L~l~~~~l~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l  347 (794)
                       .++... ++.+++..+.+.+.++..+..+.     .  .|+|.+|.+.   ...+..+++|+.|....|++....    
T Consensus       152 -~lg~~~-ik~~~l~~n~l~~~~~~~i~~l~-----~--~ldLr~N~~~---~~dls~~~~l~~l~c~rn~ls~l~----  215 (1081)
T KOG0618|consen  152 -RLGQTS-IKKLDLRLNVLGGSFLIDIYNLT-----H--QLDLRYNEME---VLDLSNLANLEVLHCERNQLSELE----  215 (1081)
T ss_pred             -hhcccc-chhhhhhhhhcccchhcchhhhh-----e--eeecccchhh---hhhhhhccchhhhhhhhcccceEE----
Confidence             222222 78888888988888887777554     3  6999999987   234677889999999999887431    


Q ss_pred             CCCCCCCEEEccCCcccccCCccccCCCCCCeEeccCcccccccChhhhcCCCCCCEEECcCCcceeEcCCCCcCccccc
Q 046398          348 GDLSSLTRLDLSRNMLNGSIPLSLGKISHLEYLDLSNNKMNGTLSEIHFVNLTKLTWFSASGNSLILQVNPNWVPPFQLK  427 (794)
Q Consensus       348 ~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~  427 (794)
                      -..++|+.|+.++|.++...+.  ....+|+++++++|+++ .+| .....+.+|+.++..+|.+ ...+..+....+|+
T Consensus       216 ~~g~~l~~L~a~~n~l~~~~~~--p~p~nl~~~dis~n~l~-~lp-~wi~~~~nle~l~~n~N~l-~~lp~ri~~~~~L~  290 (1081)
T KOG0618|consen  216 ISGPSLTALYADHNPLTTLDVH--PVPLNLQYLDISHNNLS-NLP-EWIGACANLEALNANHNRL-VALPLRISRITSLV  290 (1081)
T ss_pred             ecCcchheeeeccCcceeeccc--cccccceeeecchhhhh-cch-HHHHhcccceEecccchhH-HhhHHHHhhhhhHH
Confidence            2347899999999999844332  23468999999999998 667 4889999999999999999 45666777788999


Q ss_pred             eEecccccCCCCCCcccCCCCCCCEEeccCCCCCCCcchhHHhccccceeccCccc-CCCC-CCCEEEccCCcccccCCh
Q 046398          428 TLLLMSCHLGPQFPSWLHSQKNLSVLDISNARISDTIPRWFWNSIFQLSGIIPESF-KNFS-NLEVLNLGDNEFVGKIPT  505 (794)
Q Consensus       428 ~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~l~~~~p~~l-~~l~-~L~~L~Ls~n~l~~~ip~  505 (794)
                      .|.+..|.+. .+|......+.|++|+|..|++..                +|+.+ .... .|+.|+.+.|++. ..|.
T Consensus       291 ~l~~~~nel~-yip~~le~~~sL~tLdL~~N~L~~----------------lp~~~l~v~~~~l~~ln~s~n~l~-~lp~  352 (1081)
T KOG0618|consen  291 SLSAAYNELE-YIPPFLEGLKSLRTLDLQSNNLPS----------------LPDNFLAVLNASLNTLNVSSNKLS-TLPS  352 (1081)
T ss_pred             HHHhhhhhhh-hCCCcccccceeeeeeehhccccc----------------cchHHHhhhhHHHHHHhhhhcccc-cccc
Confidence            9999999886 566667889999999999999875                33322 2222 3788888999887 6776


Q ss_pred             hhhhcCCCCcEEEcccccccccCCccccCCCCCCEEEccCCcCcccCCchhhccccccccccccCCCCcccccccccccc
Q 046398          506 WMGEGFTSLLILILRSNKFDGFLPIQLCRLTSLQILDVANNSLSGTMPGCVNNFSAMATIDSSHQSNAMSYFEVTAYDCE  585 (794)
Q Consensus       506 ~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~  585 (794)
                      .-....+.|+.|++.+|.++...-+.+.+.++|+.|+|++|++......++.++..                        
T Consensus       353 ~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~------------------------  408 (1081)
T KOG0618|consen  353 YEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEE------------------------  408 (1081)
T ss_pred             ccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHH------------------------
Confidence            55556788999999999999888778899999999999999997433334444433                        


Q ss_pred             cceeeEEEEeccchhhcccccceeEEEcCCCccccccChhhhcccCCCEEecccccccccCCccccccCCCCEEeCCCCc
Q 046398          586 VLEDASIVMKGSMVEYNSILNLVRIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQIPENIGNLISIESLDFSTNQ  665 (794)
Q Consensus       586 ~l~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~  665 (794)
                                            |+.|+||+|+++ .+|..+..+..|++|...+|++. ..| .+.++++|+.+|+|.|+
T Consensus       409 ----------------------LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~  463 (1081)
T KOG0618|consen  409 ----------------------LEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNN  463 (1081)
T ss_pred             ----------------------hHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccch
Confidence                                  488999999999 89999999999999999999999 788 79999999999999999


Q ss_pred             CcccCcccccCCCCCCEEeCcCCc
Q 046398          666 LSSKISQSMSSLSFLNHLNVSNNL  689 (794)
Q Consensus       666 l~~~~p~~l~~l~~L~~L~ls~N~  689 (794)
                      ++...-..-..-+.|++||+++|.
T Consensus       464 L~~~~l~~~~p~p~LkyLdlSGN~  487 (1081)
T KOG0618|consen  464 LSEVTLPEALPSPNLKYLDLSGNT  487 (1081)
T ss_pred             hhhhhhhhhCCCcccceeeccCCc
Confidence            986433322233899999999997

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.97  E-value=2.3e-32  Score=283.32  Aligned_cols=356  Identities=25%  Similarity=0.369  Sum_probs=263.4

Q ss_pred             CCchhhhccCCCCEEEccCCCCCcchHHHHHhhhhcCcCCccEEEeecccccccccccccCCCCCCEEEccCCcCcC-CC
Q 046398          265 PIPTSFVRLCELTSIDVSDVKLSQDLSQVLDILSACGASALESLVFSSSQISGHLTSQLGQFKSLRTLSLDDNCISG-PL  343 (794)
Q Consensus       265 ~~~~~l~~l~~L~~L~l~~~~l~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~-~~  343 (794)
                      ..|.....+++++.|.+...++. .+|+.+..+.     +|++|.+++|++.. +...+..++.|+.+.+..|++.. -+
T Consensus        23 ~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lq-----kLEHLs~~HN~L~~-vhGELs~Lp~LRsv~~R~N~LKnsGi   95 (1255)
T KOG0444|consen   23 RFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQ-----KLEHLSMAHNQLIS-VHGELSDLPRLRSVIVRDNNLKNSGI   95 (1255)
T ss_pred             cCchhHHHhhheeEEEechhhhh-hChHHHHHHh-----hhhhhhhhhhhhHh-hhhhhccchhhHHHhhhccccccCCC
Confidence            34444444445555544444443 3444555444     55555555555553 33445566677777777766642 24


Q ss_pred             CCCcCCCCCCCEEEccCCcccccCCccccCCCCCCeEeccCcccccccChhhhcCCCCCCEEECcCCcceeEcCCCCcCc
Q 046398          344 PPALGDLSSLTRLDLSRNMLNGSIPLSLGKISHLEYLDLSNNKMNGTLSEIHFVNLTKLTWFSASGNSLILQVNPNWVPP  423 (794)
Q Consensus       344 p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~  423 (794)
                      |..+..+..|+.|||++|++. ..|..+..-.++-+|+|++|+|. +||...|.+++.|-.||+++|.+.. .|+....+
T Consensus        96 P~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~NrLe~-LPPQ~RRL  172 (1255)
T KOG0444|consen   96 PTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNRLEM-LPPQIRRL  172 (1255)
T ss_pred             Cchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhccccchhhh-cCHHHHHH
Confidence            555666777777777777776 56666666677777777777776 6666667777777777777776643 34444555


Q ss_pred             cccceEecccccCCCCCCcccCCCCCCCEEeccCCCCCCCcchhHHhccccceeccCcccCCCCCCCEEEccCCcccccC
Q 046398          424 FQLKTLLLMSCHLGPQFPSWLHSQKNLSVLDISNARISDTIPRWFWNSIFQLSGIIPESFKNFSNLEVLNLGDNEFVGKI  503 (794)
Q Consensus       424 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~i  503 (794)
                      ..|++|.+++|.+....-..+..+++|+.|.+++.+-+-              ..+|.++..+.+|..+|+|.|.+. .+
T Consensus       173 ~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl--------------~N~Ptsld~l~NL~dvDlS~N~Lp-~v  237 (1255)
T KOG0444|consen  173 SMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTL--------------DNIPTSLDDLHNLRDVDLSENNLP-IV  237 (1255)
T ss_pred             hhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchh--------------hcCCCchhhhhhhhhccccccCCC-cc
Confidence            667777777776654444445668889999999886542              258889999999999999999998 89


Q ss_pred             ChhhhhcCCCCcEEEcccccccccCCccccCCCCCCEEEccCCcCcccCCchhhccccccccccccCCCCcccccccccc
Q 046398          504 PTWMGEGFTSLLILILRSNKFDGFLPIQLCRLTSLQILDVANNSLSGTMPGCVNNFSAMATIDSSHQSNAMSYFEVTAYD  583 (794)
Q Consensus       504 p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~  583 (794)
                      |..+. .+++|+.|+|++|+++. +........+|++|++|.|+++ .+|.++..++.|                     
T Consensus       238 Pecly-~l~~LrrLNLS~N~ite-L~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL---------------------  293 (1255)
T KOG0444|consen  238 PECLY-KLRNLRRLNLSGNKITE-LNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKL---------------------  293 (1255)
T ss_pred             hHHHh-hhhhhheeccCcCceee-eeccHHHHhhhhhhccccchhc-cchHHHhhhHHH---------------------
Confidence            99988 79999999999999984 3445667789999999999998 789888887777                     


Q ss_pred             cccceeeEEEEeccchhhcccccceeEEEcCCCcccc-ccChhhhcccCCCEEecccccccccCCccccccCCCCEEeCC
Q 046398          584 CEVLEDASIVMKGSMVEYNSILNLVRIIDVSKNNFSG-EIPMELTYLRGLQSLNLSHNIFTGQIPENIGNLISIESLDFS  662 (794)
Q Consensus       584 ~~~l~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~-~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls  662 (794)
                                               +.|.+.+|+++- -||..++.+.+|+++..++|.+. ..|+.+..+..|+.|.|+
T Consensus       294 -------------------------~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~  347 (1255)
T KOG0444|consen  294 -------------------------TKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLD  347 (1255)
T ss_pred             -------------------------HHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccc
Confidence                                     555666776642 58999999999999999999998 999999999999999999


Q ss_pred             CCcCcccCcccccCCCCCCEEeCcCCcccccCCC
Q 046398          663 TNQLSSKISQSMSSLSFLNHLNVSNNLLTGKIPS  696 (794)
Q Consensus       663 ~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~  696 (794)
                      +|++. .+|+.+.-|+-|+.||+..|+=---.|.
T Consensus       348 ~NrLi-TLPeaIHlL~~l~vLDlreNpnLVMPPK  380 (1255)
T KOG0444|consen  348 HNRLI-TLPEAIHLLPDLKVLDLRENPNLVMPPK  380 (1255)
T ss_pred             cccee-echhhhhhcCCcceeeccCCcCccCCCC
Confidence            99998 4899999999999999999986544443

>PLN03210 Resistant to P

Probab=99.90  E-value=1.8e-22  Score=246.68  Aligned_cols=339  Identities=22%  Similarity=0.246  Sum_probs=181.3

Q ss_pred             hhhccCCCCEEEccCCCC------CcchHHHHHhhhhcCcCCccEEEeecccccccccccccCCCCCCEEEccCCcCcCC
Q 046398          269 SFVRLCELTSIDVSDVKL------SQDLSQVLDILSACGASALESLVFSSSQISGHLTSQLGQFKSLRTLSLDDNCISGP  342 (794)
Q Consensus       269 ~l~~l~~L~~L~l~~~~l------~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~  342 (794)
                      .|..+++|+.|.+..+..      ...+|..+..++    .+|+.|.+.++.+.. +|..+ .+.+|+.|++.+|.+. .
T Consensus       553 aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp----~~Lr~L~~~~~~l~~-lP~~f-~~~~L~~L~L~~s~l~-~  625 (1153)
T PLN03210        553 AFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLP----PKLRLLRWDKYPLRC-MPSNF-RPENLVKLQMQGSKLE-K  625 (1153)
T ss_pred             HHhcCccccEEEEecccccccccceeecCcchhhcC----cccEEEEecCCCCCC-CCCcC-CccCCcEEECcCcccc-c
Confidence            455566666665544321      112233333222    256666666665543 34444 3466667777666665 4


Q ss_pred             CCCCcCCCCCCCEEEccCCcccccCCccccCCCCCCeEeccCcccccccChhhhcCCCCCCEEECcCCcceeEcCCCCcC
Q 046398          343 LPPALGDLSSLTRLDLSRNMLNGSIPLSLGKISHLEYLDLSNNKMNGTLSEIHFVNLTKLTWFSASGNSLILQVNPNWVP  422 (794)
Q Consensus       343 ~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~  422 (794)
                      ++..+..+++|+.|+|+++...+.+| .+..+++|+.|++++|.....+|. .+.++++|+.|++++|.....+|... .
T Consensus       626 L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~-si~~L~~L~~L~L~~c~~L~~Lp~~i-~  702 (1153)
T PLN03210        626 LWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPS-SIQYLNKLEDLDMSRCENLEILPTGI-N  702 (1153)
T ss_pred             cccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccch-hhhccCCCCEEeCCCCCCcCccCCcC-C
Confidence            55555666667777776655444555 355666677777766655445555 46666666677766655444444433 4


Q ss_pred             ccccceEecccccCCCCCCcccCCCCCCCEEeccCCCCCCCcchhHHhccccceeccCcccCCCCCCCEEEccCCccc--
Q 046398          423 PFQLKTLLLMSCHLGPQFPSWLHSQKNLSVLDISNARISDTIPRWFWNSIFQLSGIIPESFKNFSNLEVLNLGDNEFV--  500 (794)
Q Consensus       423 ~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~--  500 (794)
                      +.+|+.|++++|.....+|..   ..+|+.|++++|.+..                +|..+ .+++|+.|++.++...  
T Consensus       703 l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~~----------------lP~~~-~l~~L~~L~l~~~~~~~l  762 (1153)
T PLN03210        703 LKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIEE----------------FPSNL-RLENLDELILCEMKSEKL  762 (1153)
T ss_pred             CCCCCEEeCCCCCCccccccc---cCCcCeeecCCCcccc----------------ccccc-cccccccccccccchhhc
Confidence            566677777766555555532   3456677777776553                33322 3556666666553321  


Q ss_pred             -c---cCChhhhhcCCCCcEEEcccccccccCCccccCCCCCCEEEccCCcCcccCCchhhccccccccccccCCCCccc
Q 046398          501 -G---KIPTWMGEGFTSLLILILRSNKFDGFLPIQLCRLTSLQILDVANNSLSGTMPGCVNNFSAMATIDSSHQSNAMSY  576 (794)
Q Consensus       501 -~---~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~  576 (794)
                       +   .++.......++|+.|++++|...+.+|..++++++|+.|++++|...+.+|... ++++|              
T Consensus       763 ~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL--------------  827 (1153)
T PLN03210        763 WERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESL--------------  827 (1153)
T ss_pred             cccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-Ccccc--------------
Confidence             0   1111111134567777777776666667777777777777777665444555433 33333              


Q ss_pred             ccccccccccceeeEEEEeccchhhcccccceeEEEcCCCccccccChhhhcccCCCEEecccccccccCCccccccCCC
Q 046398          577 FEVTAYDCEVLEDASIVMKGSMVEYNSILNLVRIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQIPENIGNLISI  656 (794)
Q Consensus       577 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L  656 (794)
                                                      +.|++++|.....+|..   .++|+.|+|++|.++ .+|.++..+++|
T Consensus       828 --------------------------------~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~-~iP~si~~l~~L  871 (1153)
T PLN03210        828 --------------------------------ESLDLSGCSRLRTFPDI---STNISDLNLSRTGIE-EVPWWIEKFSNL  871 (1153)
T ss_pred             --------------------------------CEEECCCCCcccccccc---ccccCEeECCCCCCc-cChHHHhcCCCC
Confidence                                            44555554333333321   234555555555554 455555555555


Q ss_pred             CEEeCCCCcCcccCcccccCCCCCCEEeCcCC
Q 046398          657 ESLDFSTNQLSSKISQSMSSLSFLNHLNVSNN  688 (794)
Q Consensus       657 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N  688 (794)
                      +.|+|++|+-...+|..+..+++|+.+++++|
T Consensus       872 ~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C  903 (1153)
T PLN03210        872 SFLDMNGCNNLQRVSLNISKLKHLETVDFSDC  903 (1153)
T ss_pred             CEEECCCCCCcCccCcccccccCCCeeecCCC
Confidence            55555553333334444455555555555554

syringae 6; Provisional

>PLN03210 Resistant to P

Probab=99.88  E-value=2.3e-21  Score=236.99  Aligned_cols=331  Identities=19%  Similarity=0.251  Sum_probs=231.8

Q ss_pred             cCCccEEEeeccc------ccccccccccCCC-CCCEEEccCCcCcCCCCCCcCCCCCCCEEEccCCcccccCCccccCC
Q 046398          302 ASALESLVFSSSQ------ISGHLTSQLGQFK-SLRTLSLDDNCISGPLPPALGDLSSLTRLDLSRNMLNGSIPLSLGKI  374 (794)
Q Consensus       302 ~~~L~~L~L~~n~------l~~~~~~~l~~l~-~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l  374 (794)
                      +++|+.|.+..+.      +...+|..+..++ +|+.|++.++.+. .+|..+ ...+|++|++.+|.+. .++..+..+
T Consensus       557 m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L~~~~~~l  633 (1153)
T PLN03210        557 MRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KLWDGVHSL  633 (1153)
T ss_pred             CccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-ccccccccC
Confidence            3378888776553      2334555555553 5888888887776 566665 4578888888888876 566677778


Q ss_pred             CCCCeEeccCcccccccChhhhcCCCCCCEEECcCCcceeEcCCCCcCccccceEecccccCCCCCCcccCCCCCCCEEe
Q 046398          375 SHLEYLDLSNNKMNGTLSEIHFVNLTKLTWFSASGNSLILQVNPNWVPPFQLKTLLLMSCHLGPQFPSWLHSQKNLSVLD  454 (794)
Q Consensus       375 ~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~  454 (794)
                      ++|+.|+++++...+.+|.  +..+++|+.|++++|.....+|..+..+.+|+.|++++|...+.+|..+ ++++|+.|+
T Consensus       634 ~~Lk~L~Ls~~~~l~~ip~--ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~  710 (1153)
T PLN03210        634 TGLRNIDLRGSKNLKEIPD--LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLN  710 (1153)
T ss_pred             CCCCEEECCCCCCcCcCCc--cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEe
Confidence            8888888887765456663  6677888888888877666677777777788888888876666666654 677888888


Q ss_pred             ccCCCCCCCcchhHHhccccceeccCcccCCCCCCCEEEccCCcccccCChhhhhcCCCCcEEEccccccc-------cc
Q 046398          455 ISNARISDTIPRWFWNSIFQLSGIIPESFKNFSNLEVLNLGDNEFVGKIPTWMGEGFTSLLILILRSNKFD-------GF  527 (794)
Q Consensus       455 Ls~n~l~~~~p~~~~~~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~-------~~  527 (794)
                      +++|...+.               +|.   ..++|+.|++++|.+. .+|..+  .+++|+.|.+.++...       ..
T Consensus       711 Lsgc~~L~~---------------~p~---~~~nL~~L~L~~n~i~-~lP~~~--~l~~L~~L~l~~~~~~~l~~~~~~l  769 (1153)
T PLN03210        711 LSGCSRLKS---------------FPD---ISTNISWLDLDETAIE-EFPSNL--RLENLDELILCEMKSEKLWERVQPL  769 (1153)
T ss_pred             CCCCCCccc---------------ccc---ccCCcCeeecCCCccc-cccccc--cccccccccccccchhhcccccccc
Confidence            888764432               222   1356778888888876 677655  4677777777764322       11


Q ss_pred             CCccccCCCCCCEEEccCCcCcccCCchhhccccccccccccCCCCcccccccccccccceeeEEEEeccchhhcccccc
Q 046398          528 LPIQLCRLTSLQILDVANNSLSGTMPGCVNNFSAMATIDSSHQSNAMSYFEVTAYDCEVLEDASIVMKGSMVEYNSILNL  607 (794)
Q Consensus       528 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~  607 (794)
                      .+......++|+.|++++|...+.+|..++++++|                                             
T Consensus       770 ~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L---------------------------------------------  804 (1153)
T PLN03210        770 TPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKL---------------------------------------------  804 (1153)
T ss_pred             chhhhhccccchheeCCCCCCccccChhhhCCCCC---------------------------------------------
Confidence            12223345678888888887777777776665555                                             


Q ss_pred             eeEEEcCCCccccccChhhhcccCCCEEecccccccccCCccccccCCCCEEeCCCCcCcccCcccccCCCCCCEEeCcC
Q 046398          608 VRIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQIPENIGNLISIESLDFSTNQLSSKISQSMSSLSFLNHLNVSN  687 (794)
Q Consensus       608 L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~  687 (794)
                       +.|++++|...+.+|..+ ++++|+.|+|++|.....+|..   .++|+.|+|++|.++ .+|..+..+++|+.|++++
T Consensus       805 -~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~  878 (1153)
T PLN03210        805 -EHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNG  878 (1153)
T ss_pred             -CEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc---ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCC
Confidence             888998886556788776 7899999999998766667654   368999999999998 5888999999999999999


Q ss_pred             C-cccccCCC-CCccCccCcccccCC
Q 046398          688 N-LLTGKIPS-STQLQSFDASCFVGN  711 (794)
Q Consensus       688 N-~l~g~iP~-~~~~~~~~~~~~~gn  711 (794)
                      | ++.+ +|. ...+..+....+.++
T Consensus       879 C~~L~~-l~~~~~~L~~L~~L~l~~C  903 (1153)
T PLN03210        879 CNNLQR-VSLNISKLKHLETVDFSDC  903 (1153)
T ss_pred             CCCcCc-cCcccccccCCCeeecCCC
Confidence            5 4554 543 344555544444444

syringae 6; Provisional

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.88  E-value=5.3e-25  Score=218.18  Aligned_cols=375  Identities=24%  Similarity=0.279  Sum_probs=238.7

Q ss_pred             CccEEEeecccccccccccccCCCCCCEEEccCCcCcCCCCCCcCCCCCCCEEEccC-CcccccCCccccCCCCCCeEec
Q 046398          304 ALESLVFSSSQISGHLTSQLGQFKSLRTLSLDDNCISGPLPPALGDLSSLTRLDLSR-NMLNGSIPLSLGKISHLEYLDL  382 (794)
Q Consensus       304 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~-n~l~~~~p~~l~~l~~L~~L~L  382 (794)
                      ...+++|..|+|+..++..|+.+++|+.|||++|.|+.+-|.+|.++++|.+|-+.+ |+|+......|+++.+|+.|.+
T Consensus        68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLll  147 (498)
T KOG4237|consen   68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLL  147 (498)
T ss_pred             cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhc
Confidence            566777777777777777777777777788877777777777777777777666655 7777555566777777777777


Q ss_pred             cCcccccccChhhhcCCCCCCEEECcCCcceeEcCCCCcCccccceEecccccCC------------CCCCcccCCCCCC
Q 046398          383 SNNKMNGTLSEIHFVNLTKLTWFSASGNSLILQVNPNWVPPFQLKTLLLMSCHLG------------PQFPSWLHSQKNL  450 (794)
Q Consensus       383 s~N~l~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~------------~~~~~~l~~l~~L  450 (794)
                      .-|++. .+....|..+++|..|.+.+|.+.......+.....++.+.+..|.+.            ...|..++...-.
T Consensus       148 Nan~i~-Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~  226 (498)
T KOG4237|consen  148 NANHIN-CIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCV  226 (498)
T ss_pred             Chhhhc-chhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceec
Confidence            777776 555557777777777777777776666666777777777776665521            1122223333333


Q ss_pred             CEEeccCCCCCCCcchhHHhccc----------cceeccC-cccCCCCCCCEEEccCCcccccCChhhhhcCCCCcEEEc
Q 046398          451 SVLDISNARISDTIPRWFWNSIF----------QLSGIIP-ESFKNFSNLEVLNLGDNEFVGKIPTWMGEGFTSLLILIL  519 (794)
Q Consensus       451 ~~L~Ls~n~l~~~~p~~~~~~~~----------~l~~~~p-~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L  519 (794)
                      .-..+.+.++...-+..|.....          ...+.-| ..|..+++|++|+|++|+++ .|.+..+++...++.|.|
T Consensus       227 ~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~-~i~~~aFe~~a~l~eL~L  305 (498)
T KOG4237|consen  227 SPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKIT-RIEDGAFEGAAELQELYL  305 (498)
T ss_pred             chHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccc-hhhhhhhcchhhhhhhhc
Confidence            33333344433322222222110          1112222 23678889999999999998 566666678889999999


Q ss_pred             ccccccccCCccccCCCCCCEEEccCCcCcccCCchhhccccccccccccCCCCcc--------cc----cccccccc--
Q 046398          520 RSNKFDGFLPIQLCRLTSLQILDVANNSLSGTMPGCVNNFSAMATIDSSHQSNAMS--------YF----EVTAYDCE--  585 (794)
Q Consensus       520 ~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~--------~~----~~~~~~~~--  585 (794)
                      ..|++...-...|..+..|+.|+|.+|+|+...|..|..+.+|.+++.-.++..-.        +.    ......|.  
T Consensus       306 ~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr~~~~~~~~~Cq~p  385 (498)
T KOG4237|consen  306 TRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGEWLRKKSVVGNPRCQSP  385 (498)
T ss_pred             CcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccchHHHHHHHhhCCCCCCCCCCCC
Confidence            99998876667788899999999999999988888888888887775433321100        00    00000010  


Q ss_pred             -cceeeEEE---E----eccchhhc---------ccccce-eEEEcCCCccccccChhhhcccCCCEEecccccccccCC
Q 046398          586 -VLEDASIV---M----KGSMVEYN---------SILNLV-RIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQIP  647 (794)
Q Consensus       586 -~l~~~~~~---~----~~~~~~~~---------~~l~~L-~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip  647 (794)
                       .+..+.+.   .    .+ .++..         ...+.+ ++...|+..+. .+|..+.  ..-.+|++.+|.++ .+|
T Consensus       386 ~~~~~~~~~dv~~~~~~c~-~~ee~~~~~s~~cP~~c~c~~tVvRcSnk~lk-~lp~~iP--~d~telyl~gn~~~-~vp  460 (498)
T KOG4237|consen  386 GFVRQIPISDVAFGDFRCG-GPEELGCLTSSPCPPPCTCLDTVVRCSNKLLK-LLPRGIP--VDVTELYLDGNAIT-SVP  460 (498)
T ss_pred             chhccccchhccccccccC-CccccCCCCCCCCCCCcchhhhhHhhcccchh-hcCCCCC--chhHHHhcccchhc-ccC
Confidence             11111100   0    00 00000         001111 22333444433 4444332  34567899999999 888


Q ss_pred             ccccccCCCCEEeCCCCcCcccCcccccCCCCCCEEeCcCC
Q 046398          648 ENIGNLISIESLDFSTNQLSSKISQSMSSLSFLNHLNVSNN  688 (794)
Q Consensus       648 ~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N  688 (794)
                      .+  .+.+| .+|+|+|+++..--..|.++++|.+|-+|||
T Consensus       461 ~~--~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tlilsyn  498 (498)
T KOG4237|consen  461 DE--LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLILSYN  498 (498)
T ss_pred             HH--HHhhh-hcccccCceehhhcccccchhhhheeEEecC
Confidence            87  67888 9999999999888888999999999999987

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.88  E-value=2.7e-24  Score=213.22  Aligned_cols=277  Identities=25%  Similarity=0.273  Sum_probs=160.5

Q ss_pred             CCCEEeCCCCCCCCCCCCcccCCCCCCCEEEcCCCCCCCCCcccccCCccccccccCc-cccccccccccccccCCC-Cc
Q 046398          118 HLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRCLDLSW-SEYALQVHSFSWLSGQIP-NR  195 (794)
Q Consensus       118 ~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~-~~~~~~~~~~~~~~~~lp-~~  195 (794)
                      .-+.++|..|.|+.+ -|..|+.+++||.||||+|.|+.+-|++|.++++|..|-+.+ |+++           .+| ..
T Consensus        68 ~tveirLdqN~I~~i-P~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~-----------~l~k~~  135 (498)
T KOG4237|consen   68 ETVEIRLDQNQISSI-PPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT-----------DLPKGA  135 (498)
T ss_pred             cceEEEeccCCcccC-ChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh-----------hhhhhH
Confidence            456788888988864 456688899999999999999888888999998887776655 6655           566 45


Q ss_pred             cCCCCCCCEEECcCCCCCCCCCccccCCCCCCeEeeeccCCCCCCCccccCCCCCCcEEEccCCCCCCCCC---------
Q 046398          196 LGNLTSLRHLDLSANKFNSTTAGWLSKFNHLEFLSLSSNGLQGTISSIGLENLTSIKTIDLSLNFELGGPI---------  266 (794)
Q Consensus       196 l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~~~~~~~~~---------  266 (794)
                      |++|.+|+.|.+.-|++.-...+.|..+++|..|.+.+|.+. .++...+..+..++.+.+..+..+..--         
T Consensus       136 F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q-~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a  214 (498)
T KOG4237|consen  136 FGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQ-SICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLA  214 (498)
T ss_pred             hhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhh-hhccccccchhccchHhhhcCccccccccchhhhHHh
Confidence            788889999999888888888888899999999999988887 6666678888888888887442221110         


Q ss_pred             --chhhhccCCCCEEEccCCCCCcchHHHHHhhhhcCcCCccEEEeeccccccccc-ccccCCCCCCEEEccCCcCcCCC
Q 046398          267 --PTSFVRLCELTSIDVSDVKLSQDLSQVLDILSACGASALESLVFSSSQISGHLT-SQLGQFKSLRTLSLDDNCISGPL  343 (794)
Q Consensus       267 --~~~l~~l~~L~~L~l~~~~l~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~  343 (794)
                        |..++...-.....+.+.++....+..+..    ...++.+-..+.+...+.-| ..|..+++|++|+|++|+++++-
T Consensus       215 ~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c----~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~  290 (498)
T KOG4237|consen  215 MNPIETSGARCVSPYRLYYKRINQEDARKFLC----SLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIE  290 (498)
T ss_pred             hchhhcccceecchHHHHHHHhcccchhhhhh----hHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhh
Confidence              111111111111111111111111100000    00011000111111111112 23455555555555555555555


Q ss_pred             CCCcCCCCCCCEEEccCCcccccCCccccCCCCCCeEeccCcccccccChhhhcCCCCCCEEECcCCcc
Q 046398          344 PPALGDLSSLTRLDLSRNMLNGSIPLSLGKISHLEYLDLSNNKMNGTLSEIHFVNLTKLTWFSASGNSL  412 (794)
Q Consensus       344 p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~ls~n~l  412 (794)
                      +.+|.+...+++|.|..|++...-...|.++..|+.|+|.+|+|+ .+....|..+.+|..|.+-.|.+
T Consensus       291 ~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it-~~~~~aF~~~~~l~~l~l~~Np~  358 (498)
T KOG4237|consen  291 DGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQIT-TVAPGAFQTLFSLSTLNLLSNPF  358 (498)
T ss_pred             hhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeE-EEecccccccceeeeeehccCcc
Confidence            555555555555555555554333344455555555555555555 33333555555555555555543

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.87  E-value=2.3e-21  Score=219.29  Aligned_cols=270  Identities=26%  Similarity=0.314  Sum_probs=159.2

Q ss_pred             hhhhcCcCCccEEEeecccccccccccccCCCCCCEEEccCCcCcCCCCCCcCCCCCCCEEEccCCcccccCCccccCCC
Q 046398          296 ILSACGASALESLVFSSSQISGHLTSQLGQFKSLRTLSLDDNCISGPLPPALGDLSSLTRLDLSRNMLNGSIPLSLGKIS  375 (794)
Q Consensus       296 ~l~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~  375 (794)
                      .+..|....-..|+++++.++. +|..+.  ++|+.|++.+|+++. +|.   ..++|++|++++|+++ .+|..   .+
T Consensus       194 r~~~Cl~~~~~~LdLs~~~Lts-LP~~l~--~~L~~L~L~~N~Lt~-LP~---lp~~Lk~LdLs~N~Lt-sLP~l---p~  262 (788)
T PRK15387        194 KMRACLNNGNAVLNVGESGLTT-LPDCLP--AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLT-SLPVL---PP  262 (788)
T ss_pred             HHHHHhcCCCcEEEcCCCCCCc-CCcchh--cCCCEEEccCCcCCC-CCC---CCCCCcEEEecCCccC-cccCc---cc
Confidence            3334444466677888887774 555553  477888888888773 453   2467888888888777 44532   35


Q ss_pred             CCCeEeccCcccccccChhhhcCCCCCCEEECcCCcceeEcCCCCcCccccceEecccccCCCCCCcccCCCCCCCEEec
Q 046398          376 HLEYLDLSNNKMNGTLSEIHFVNLTKLTWFSASGNSLILQVNPNWVPPFQLKTLLLMSCHLGPQFPSWLHSQKNLSVLDI  455 (794)
Q Consensus       376 ~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L  455 (794)
                      +|+.|++++|.+. .+|.    ..++|+.|++++|.++.                         +|.   .+++|+.|++
T Consensus       263 sL~~L~Ls~N~L~-~Lp~----lp~~L~~L~Ls~N~Lt~-------------------------LP~---~p~~L~~LdL  309 (788)
T PRK15387        263 GLLELSIFSNPLT-HLPA----LPSGLCKLWIFGNQLTS-------------------------LPV---LPPGLQELSV  309 (788)
T ss_pred             ccceeeccCCchh-hhhh----chhhcCEEECcCCcccc-------------------------ccc---cccccceeEC
Confidence            7777888877776 3333    12345556666655432                         221   1245666666


Q ss_pred             cCCCCCCCcchhHHhccccceeccCcccCCCCCCCEEEccCCcccccCChhhhhcCCCCcEEEcccccccccCCccccCC
Q 046398          456 SNARISDTIPRWFWNSIFQLSGIIPESFKNFSNLEVLNLGDNEFVGKIPTWMGEGFTSLLILILRSNKFDGFLPIQLCRL  535 (794)
Q Consensus       456 s~n~l~~~~p~~~~~~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l  535 (794)
                      ++|++++                +|..   ..+|+.|++++|+++ .+|..    ..+|+.|+|++|++++ +|..   .
T Consensus       310 S~N~L~~----------------Lp~l---p~~L~~L~Ls~N~L~-~LP~l----p~~Lq~LdLS~N~Ls~-LP~l---p  361 (788)
T PRK15387        310 SDNQLAS----------------LPAL---PSELCKLWAYNNQLT-SLPTL----PSGLQELSVSDNQLAS-LPTL---P  361 (788)
T ss_pred             CCCcccc----------------CCCC---cccccccccccCccc-ccccc----ccccceEecCCCccCC-CCCC---C
Confidence            6666554                2211   124556666666665 45531    2456666666666663 3332   2


Q ss_pred             CCCCEEEccCCcCcccCCchhhccccccccccccCCCCcccccccccccccceeeEEEEeccchhhcccccceeEEEcCC
Q 046398          536 TSLQILDVANNSLSGTMPGCVNNFSAMATIDSSHQSNAMSYFEVTAYDCEVLEDASIVMKGSMVEYNSILNLVRIIDVSK  615 (794)
Q Consensus       536 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~LdLs~  615 (794)
                      ++|+.|++++|+++. +|...                                                 ..|+.|++++
T Consensus       362 ~~L~~L~Ls~N~L~~-LP~l~-------------------------------------------------~~L~~LdLs~  391 (788)
T PRK15387        362 SELYKLWAYNNRLTS-LPALP-------------------------------------------------SGLKELIVSG  391 (788)
T ss_pred             cccceehhhcccccc-Ccccc-------------------------------------------------cccceEEecC
Confidence            456666677666652 33211                                                 1235667777


Q ss_pred             CccccccChhhhcccCCCEEecccccccccCCccccccCCCCEEeCCCCcCcccCcccccCCCCCCEEeCcCCcccccCC
Q 046398          616 NNFSGEIPMELTYLRGLQSLNLSHNIFTGQIPENIGNLISIESLDFSTNQLSSKISQSMSSLSFLNHLNVSNNLLTGKIP  695 (794)
Q Consensus       616 N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP  695 (794)
                      |+++ .+|..   .++|+.|++++|+++ .+|...   .+|+.|++++|+++ .+|..+..+++|+.|+|++|+|+|.+|
T Consensus       392 N~Lt-~LP~l---~s~L~~LdLS~N~Ls-sIP~l~---~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~  462 (788)
T PRK15387        392 NRLT-SLPVL---PSELKELMVSGNRLT-SLPMLP---SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTL  462 (788)
T ss_pred             Cccc-CCCCc---ccCCCEEEccCCcCC-CCCcch---hhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHH
Confidence            7766 34432   246677777777776 456432   35666777777776 466667777777777777777777666


Q ss_pred             C
Q 046398          696 S  696 (794)
Q Consensus       696 ~  696 (794)
                      .
T Consensus       463 ~  463 (788)
T PRK15387        463 Q  463 (788)
T ss_pred             H
Confidence            4

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.87  E-value=2.4e-21  Score=219.19  Aligned_cols=260  Identities=27%  Similarity=0.340  Sum_probs=192.8

Q ss_pred             CCCCEEEccCCcCcCCCCCCcCCCCCCCEEEccCCcccccCCccccCCCCCCeEeccCcccccccChhhhcCCCCCCEEE
Q 046398          327 KSLRTLSLDDNCISGPLPPALGDLSSLTRLDLSRNMLNGSIPLSLGKISHLEYLDLSNNKMNGTLSEIHFVNLTKLTWFS  406 (794)
Q Consensus       327 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~  406 (794)
                      .+-..|+++++.++ .+|..+.  ++|+.|++.+|+++ .+|..   +++|++|++++|+++ .+|.    ..++|+.|+
T Consensus       201 ~~~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt-~LP~l---p~~Lk~LdLs~N~Lt-sLP~----lp~sL~~L~  268 (788)
T PRK15387        201 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPAL---PPELRTLEVSGNQLT-SLPV----LPPGLLELS  268 (788)
T ss_pred             CCCcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCC-CCCCC---CCCCcEEEecCCccC-cccC----cccccceee
Confidence            45678999999998 6777665  47999999999988 46642   578899999998887 4543    124555555


Q ss_pred             CcCCcceeEcCCCCcCccccceEecccccCCCCCCcccCCCCCCCEEeccCCCCCCCcchhHHhccccceeccCcccCCC
Q 046398          407 ASGNSLILQVNPNWVPPFQLKTLLLMSCHLGPQFPSWLHSQKNLSVLDISNARISDTIPRWFWNSIFQLSGIIPESFKNF  486 (794)
Q Consensus       407 ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~l~~~~p~~l~~l  486 (794)
                      +++|.+.                         .+|..   ..+|+.|++++|+++.                +|.   ..
T Consensus       269 Ls~N~L~-------------------------~Lp~l---p~~L~~L~Ls~N~Lt~----------------LP~---~p  301 (788)
T PRK15387        269 IFSNPLT-------------------------HLPAL---PSGLCKLWIFGNQLTS----------------LPV---LP  301 (788)
T ss_pred             ccCCchh-------------------------hhhhc---hhhcCEEECcCCcccc----------------ccc---cc
Confidence            5555443                         22321   2568899999999885                343   24


Q ss_pred             CCCCEEEccCCcccccCChhhhhcCCCCcEEEcccccccccCCccccCCCCCCEEEccCCcCcccCCchhhccccccccc
Q 046398          487 SNLEVLNLGDNEFVGKIPTWMGEGFTSLLILILRSNKFDGFLPIQLCRLTSLQILDVANNSLSGTMPGCVNNFSAMATID  566 (794)
Q Consensus       487 ~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~  566 (794)
                      ++|+.|++++|+++ .+|..    ..+|+.|++++|++++ +|..   ..+|+.|+|++|++++ +|...          
T Consensus       302 ~~L~~LdLS~N~L~-~Lp~l----p~~L~~L~Ls~N~L~~-LP~l---p~~Lq~LdLS~N~Ls~-LP~lp----------  361 (788)
T PRK15387        302 PGLQELSVSDNQLA-SLPAL----PSELCKLWAYNNQLTS-LPTL---PSGLQELSVSDNQLAS-LPTLP----------  361 (788)
T ss_pred             cccceeECCCCccc-cCCCC----cccccccccccCcccc-cccc---ccccceEecCCCccCC-CCCCC----------
Confidence            68999999999998 57752    3578999999999985 5532   3589999999999984 44321          


Q ss_pred             cccCCCCcccccccccccccceeeEEEEeccchhhcccccceeEEEcCCCccccccChhhhcccCCCEEecccccccccC
Q 046398          567 SSHQSNAMSYFEVTAYDCEVLEDASIVMKGSMVEYNSILNLVRIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQI  646 (794)
Q Consensus       567 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~i  646 (794)
                                                             .+|+.|++++|+++ .+|..   ..+|+.|+|++|+|+ .+
T Consensus       362 ---------------------------------------~~L~~L~Ls~N~L~-~LP~l---~~~L~~LdLs~N~Lt-~L  397 (788)
T PRK15387        362 ---------------------------------------SELYKLWAYNNRLT-SLPAL---PSGLKELIVSGNRLT-SL  397 (788)
T ss_pred             ---------------------------------------cccceehhhccccc-cCccc---ccccceEEecCCccc-CC
Confidence                                                   22477899999998 47754   357999999999999 57


Q ss_pred             CccccccCCCCEEeCCCCcCcccCcccccCCCCCCEEeCcCCcccccCCCC-CccCccCcccccCCCcCCCC
Q 046398          647 PENIGNLISIESLDFSTNQLSSKISQSMSSLSFLNHLNVSNNLLTGKIPSS-TQLQSFDASCFVGNNLCGPP  717 (794)
Q Consensus       647 p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~~-~~~~~~~~~~~~gn~lcg~~  717 (794)
                      |...   ++|+.|++++|++++ +|..+   ..|+.|++++|+++ .+|.. ..+..+....+.+|.|+|..
T Consensus       398 P~l~---s~L~~LdLS~N~Lss-IP~l~---~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~  461 (788)
T PRK15387        398 PVLP---SELKELMVSGNRLTS-LPMLP---SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERT  461 (788)
T ss_pred             CCcc---cCCCEEEccCCcCCC-CCcch---hhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchH
Confidence            7543   679999999999986 67543   46889999999998 67754 45666667778899888753

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.80  E-value=2.3e-19  Score=204.67  Aligned_cols=101  Identities=24%  Similarity=0.352  Sum_probs=58.5

Q ss_pred             cCcCCccEEEeecccccccccccccCCCCCCEEEccCCcCcCCCCCCcCCCCCCCEEEccCCcccccCCccccCCCCCCe
Q 046398          300 CGASALESLVFSSSQISGHLTSQLGQFKSLRTLSLDDNCISGPLPPALGDLSSLTRLDLSRNMLNGSIPLSLGKISHLEY  379 (794)
Q Consensus       300 ~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~  379 (794)
                      |...+...|+++++.++. +|..+.  ++|+.|++++|.++ .+|..+.  ++|++|++++|+++ .+|..+.  ++|+.
T Consensus       175 Cl~~~~~~L~L~~~~Lts-LP~~Ip--~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~  245 (754)
T PRK15370        175 CLKNNKTELRLKILGLTT-IPACIP--EQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQE  245 (754)
T ss_pred             hcccCceEEEeCCCCcCc-CCcccc--cCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhh--ccccE
Confidence            333456677777776664 343332  46777777777777 4454433  46777777777776 4554442  46777


Q ss_pred             EeccCcccccccChhhhcCCCCCCEEECcCCcce
Q 046398          380 LDLSNNKMNGTLSEIHFVNLTKLTWFSASGNSLI  413 (794)
Q Consensus       380 L~Ls~N~l~~~~~~~~~~~l~~L~~L~ls~n~l~  413 (794)
                      |++++|.+. .+|.. +.  .+|+.|++++|++.
T Consensus       246 L~Ls~N~L~-~LP~~-l~--s~L~~L~Ls~N~L~  275 (754)
T PRK15370        246 MELSINRIT-ELPER-LP--SALQSLDLFHNKIS  275 (754)
T ss_pred             EECcCCccC-cCChh-Hh--CCCCEEECcCCccC
Confidence            777777766 44442 11  24555555555443

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.78  E-value=6.8e-19  Score=200.91  Aligned_cols=247  Identities=24%  Similarity=0.407  Sum_probs=144.1

Q ss_pred             CCCCEEEccCCcCcCCCCCCcCCCCCCCEEEccCCcccccCCccccCCCCCCeEeccCcccccccChhhhcCCCCCCEEE
Q 046398          327 KSLRTLSLDDNCISGPLPPALGDLSSLTRLDLSRNMLNGSIPLSLGKISHLEYLDLSNNKMNGTLSEIHFVNLTKLTWFS  406 (794)
Q Consensus       327 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~  406 (794)
                      .+...|+++++.++ .+|..+.  +.|+.|++++|+++ .+|..+.  ++|++|++++|+++ .+|.. +  .++|+.|+
T Consensus       178 ~~~~~L~L~~~~Lt-sLP~~Ip--~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~-l--~~~L~~L~  247 (754)
T PRK15370        178 NNKTELRLKILGLT-TIPACIP--EQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPAT-L--PDTIQEME  247 (754)
T ss_pred             cCceEEEeCCCCcC-cCCcccc--cCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChh-h--hccccEEE
Confidence            45788999999988 4666553  57999999999998 5666553  58999999999887 55542 2  23566666


Q ss_pred             CcCCcceeEcCCCCcCccccceEecccccCCCCCCcccCCCCCCCEEeccCCCCCCCcchhHHhccccceeccCcccCCC
Q 046398          407 ASGNSLILQVNPNWVPPFQLKTLLLMSCHLGPQFPSWLHSQKNLSVLDISNARISDTIPRWFWNSIFQLSGIIPESFKNF  486 (794)
Q Consensus       407 ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~l~~~~p~~l~~l  486 (794)
                      +++|.+.                         .+|..+.  .+|+.|++++|+++.                +|..+.  
T Consensus       248 Ls~N~L~-------------------------~LP~~l~--s~L~~L~Ls~N~L~~----------------LP~~l~--  282 (754)
T PRK15370        248 LSINRIT-------------------------ELPERLP--SALQSLDLFHNKISC----------------LPENLP--  282 (754)
T ss_pred             CcCCccC-------------------------cCChhHh--CCCCEEECcCCccCc----------------cccccC--
Confidence            6666654                         2232221  345566666665553                222221  


Q ss_pred             CCCCEEEccCCcccccCChhhhhcCCCCcEEEcccccccccCCccccCCCCCCEEEccCCcCcccCCchhhccccccccc
Q 046398          487 SNLEVLNLGDNEFVGKIPTWMGEGFTSLLILILRSNKFDGFLPIQLCRLTSLQILDVANNSLSGTMPGCVNNFSAMATID  566 (794)
Q Consensus       487 ~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~  566 (794)
                      ++|+.|++++|+++ .+|..+.   ++|+.|++++|+++. +|..+  .++|+.|++++|.+++ +|..+          
T Consensus       283 ~sL~~L~Ls~N~Lt-~LP~~lp---~sL~~L~Ls~N~Lt~-LP~~l--~~sL~~L~Ls~N~Lt~-LP~~l----------  344 (754)
T PRK15370        283 EELRYLSVYDNSIR-TLPAHLP---SGITHLNVQSNSLTA-LPETL--PPGLKTLEAGENALTS-LPASL----------  344 (754)
T ss_pred             CCCcEEECCCCccc-cCcccch---hhHHHHHhcCCcccc-CCccc--cccceeccccCCcccc-CChhh----------
Confidence            35666666666665 4554322   355666666666653 33322  2456666666666553 33221          


Q ss_pred             cccCCCCcccccccccccccceeeEEEEeccchhhcccccceeEEEcCCCccccccChhhhcccCCCEEecccccccccC
Q 046398          567 SSHQSNAMSYFEVTAYDCEVLEDASIVMKGSMVEYNSILNLVRIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQI  646 (794)
Q Consensus       567 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~i  646 (794)
                                                            .++|+.|++++|+++ .+|..+.  ++|+.|+|++|+++ .+
T Consensus       345 --------------------------------------~~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt-~L  382 (754)
T PRK15370        345 --------------------------------------PPELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALT-NL  382 (754)
T ss_pred             --------------------------------------cCcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCC-CC
Confidence                                                  122356666666665 4554442  46666666666666 45


Q ss_pred             CccccccCCCCEEeCCCCcCcccCcccc----cCCCCCCEEeCcCCccc
Q 046398          647 PENIGNLISIESLDFSTNQLSSKISQSM----SSLSFLNHLNVSNNLLT  691 (794)
Q Consensus       647 p~~l~~l~~L~~L~Ls~N~l~~~~p~~l----~~l~~L~~L~ls~N~l~  691 (794)
                      |+.+.  .+|+.|++++|++++ +|..+    ..++.+..+++.+|+++
T Consensus       383 P~~l~--~sL~~LdLs~N~L~~-LP~sl~~~~~~~~~l~~L~L~~Npls  428 (754)
T PRK15370        383 PENLP--AALQIMQASRNNLVR-LPESLPHFRGEGPQPTRIIVEYNPFS  428 (754)
T ss_pred             CHhHH--HHHHHHhhccCCccc-CchhHHHHhhcCCCccEEEeeCCCcc
Confidence            55443  256666666666663 33332    33456666666666665

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.71  E-value=1.3e-18  Score=185.08  Aligned_cols=67  Identities=27%  Similarity=0.339  Sum_probs=32.2

Q ss_pred             cCCCCCCCEEEccCCcccccCChhhhh---cCCCCcEEEccccccccc----CCccccCCCCCCEEEccCCcCc
Q 046398          483 FKNFSNLEVLNLGDNEFVGKIPTWMGE---GFTSLLILILRSNKFDGF----LPIQLCRLTSLQILDVANNSLS  549 (794)
Q Consensus       483 l~~l~~L~~L~Ls~n~l~~~ip~~~~~---~l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~Ls~N~l~  549 (794)
                      +..+++|++|++++|.+++.....+..   ..++|+.|++++|.+++.    ++..+..+++|++|++++|+++
T Consensus       161 ~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~  234 (319)
T cd00116         161 LRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLT  234 (319)
T ss_pred             HHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCc
Confidence            444556666666666655321111111   233555555555555422    1223444556666666666554

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.71  E-value=9.5e-19  Score=186.20  Aligned_cols=282  Identities=24%  Similarity=0.262  Sum_probs=161.2

Q ss_pred             EEEccCCcCcC-CCCCCcCCCCCCCEEEccCCccccc----CCccccCCCCCCeEeccCcccccccCh------hhhcCC
Q 046398          331 TLSLDDNCISG-PLPPALGDLSSLTRLDLSRNMLNGS----IPLSLGKISHLEYLDLSNNKMNGTLSE------IHFVNL  399 (794)
Q Consensus       331 ~L~L~~n~l~~-~~p~~l~~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~~~~------~~~~~l  399 (794)
                      .|+|..+.+++ ..+..+..+.+|++|+++++.+++.    ++..+...+++++++++++.+.+ .+.      ..+..+
T Consensus         2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~-~~~~~~~~~~~l~~~   80 (319)
T cd00116           2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGR-IPRGLQSLLQGLTKG   80 (319)
T ss_pred             ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCC-cchHHHHHHHHHHhc
Confidence            45666666652 2223344556677777777776432    34445556667777777766542 010      123334


Q ss_pred             CCCCEEECcCCcceeEcCCCCcCccccceEecccccCCCCCCcccCCC---CCCCEEeccCCCCCCCcchhHHhccccce
Q 046398          400 TKLTWFSASGNSLILQVNPNWVPPFQLKTLLLMSCHLGPQFPSWLHSQ---KNLSVLDISNARISDTIPRWFWNSIFQLS  476 (794)
Q Consensus       400 ~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l---~~L~~L~Ls~n~l~~~~p~~~~~~~~~l~  476 (794)
                      ++|+.|++++|.                        +....+..+..+   ++|++|++++|++++....+         
T Consensus        81 ~~L~~L~l~~~~------------------------~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~---------  127 (319)
T cd00116          81 CGLQELDLSDNA------------------------LGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRL---------  127 (319)
T ss_pred             CceeEEEccCCC------------------------CChhHHHHHHHHhccCcccEEEeeCCccchHHHHH---------
Confidence            444444444443                        332222222222   44888888888776422211         


Q ss_pred             eccCcccCCC-CCCCEEEccCCcccccCChhh---hhcCCCCcEEEccccccccc----CCccccCCCCCCEEEccCCcC
Q 046398          477 GIIPESFKNF-SNLEVLNLGDNEFVGKIPTWM---GEGFTSLLILILRSNKFDGF----LPIQLCRLTSLQILDVANNSL  548 (794)
Q Consensus       477 ~~~p~~l~~l-~~L~~L~Ls~n~l~~~ip~~~---~~~l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~Ls~N~l  548 (794)
                        +...+..+ ++|+.|++++|.+++.....+   ...+++|+.|++++|.+++.    ++..+..+++|++|++++|.+
T Consensus       128 --l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i  205 (319)
T cd00116         128 --LAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGL  205 (319)
T ss_pred             --HHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCcc
Confidence              22334445 778888888888774322221   12456788888888887742    233445567888888888877


Q ss_pred             cccCCchhhccccccccccccCCCCcccccccccccccceeeEEEEeccchhhcccccceeEEEcCCCccccccChhhhc
Q 046398          549 SGTMPGCVNNFSAMATIDSSHQSNAMSYFEVTAYDCEVLEDASIVMKGSMVEYNSILNLVRIIDVSKNNFSGEIPMELTY  628 (794)
Q Consensus       549 ~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~  628 (794)
                      ++.....+..                                          ....++.|+.|++++|.+++.....+..
T Consensus       206 ~~~~~~~l~~------------------------------------------~~~~~~~L~~L~ls~n~l~~~~~~~l~~  243 (319)
T cd00116         206 TDEGASALAE------------------------------------------TLASLKSLEVLNLGDNNLTDAGAAALAS  243 (319)
T ss_pred             ChHHHHHHHH------------------------------------------HhcccCCCCEEecCCCcCchHHHHHHHH
Confidence            6332221110                                          1112345678888888877533333322


Q ss_pred             -----ccCCCEEeccccccc----ccCCccccccCCCCEEeCCCCcCccc----CcccccCC-CCCCEEeCcCCcc
Q 046398          629 -----LRGLQSLNLSHNIFT----GQIPENIGNLISIESLDFSTNQLSSK----ISQSMSSL-SFLNHLNVSNNLL  690 (794)
Q Consensus       629 -----l~~L~~L~Ls~N~l~----~~ip~~l~~l~~L~~L~Ls~N~l~~~----~p~~l~~l-~~L~~L~ls~N~l  690 (794)
                           .+.|++|++++|.++    ..+.+.+..+++|+.+++++|.++..    ....+... +.|+++++.+|++
T Consensus       244 ~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (319)
T cd00116         244 ALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF  319 (319)
T ss_pred             HHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence                 367888888888876    23344556667888888888888754    44444444 6778888877764

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.66  E-value=3.1e-18  Score=150.99  Aligned_cols=185  Identities=26%  Similarity=0.502  Sum_probs=149.5

Q ss_pred             cCCCCCCCEEeccCCCCCCCcchhHHhccccceeccCcccCCCCCCCEEEccCCcccccCChhhhhcCCCCcEEEccccc
Q 046398          444 LHSQKNLSVLDISNARISDTIPRWFWNSIFQLSGIIPESFKNFSNLEVLNLGDNEFVGKIPTWMGEGFTSLLILILRSNK  523 (794)
Q Consensus       444 l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~  523 (794)
                      +-.+..++.|.+++|+++.                +|..++.+.+|+.|++++|++. ++|..+. .+++|+.|+++-|+
T Consensus        29 Lf~~s~ITrLtLSHNKl~~----------------vppnia~l~nlevln~~nnqie-~lp~~is-sl~klr~lnvgmnr   90 (264)
T KOG0617|consen   29 LFNMSNITRLTLSHNKLTV----------------VPPNIAELKNLEVLNLSNNQIE-ELPTSIS-SLPKLRILNVGMNR   90 (264)
T ss_pred             ccchhhhhhhhcccCceee----------------cCCcHHHhhhhhhhhcccchhh-hcChhhh-hchhhhheecchhh
Confidence            3456778889999999884                6777888999999999999998 8998887 69999999999999


Q ss_pred             ccccCCccccCCCCCCEEEccCCcCcc-cCCchhhccccccccccccCCCCcccccccccccccceeeEEEEeccchhhc
Q 046398          524 FDGFLPIQLCRLTSLQILDVANNSLSG-TMPGCVNNFSAMATIDSSHQSNAMSYFEVTAYDCEVLEDASIVMKGSMVEYN  602 (794)
Q Consensus       524 l~~~~p~~~~~l~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  602 (794)
                      +. ..|..|+.++.|+.||+++|++.. .+|+.|..++.|                                        
T Consensus        91 l~-~lprgfgs~p~levldltynnl~e~~lpgnff~m~tl----------------------------------------  129 (264)
T KOG0617|consen   91 LN-ILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTL----------------------------------------  129 (264)
T ss_pred             hh-cCccccCCCchhhhhhccccccccccCCcchhHHHHH----------------------------------------
Confidence            87 778999999999999999998864 466666554444                                        


Q ss_pred             ccccceeEEEcCCCccccccChhhhcccCCCEEecccccccccCCccccccCCCCEEeCCCCcCcccCcccccCCCC---
Q 046398          603 SILNLVRIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQIPENIGNLISIESLDFSTNQLSSKISQSMSSLSF---  679 (794)
Q Consensus       603 ~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~---  679 (794)
                            +.|.|+.|.+. .+|..++++++|+.|.+..|.+. ..|..++.++.|+.|++.+|+++- +|..++.+.-   
T Consensus       130 ------ralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~v-lppel~~l~l~~~  200 (264)
T KOG0617|consen  130 ------RALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLTV-LPPELANLDLVGN  200 (264)
T ss_pred             ------HHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceeee-cChhhhhhhhhhh
Confidence                  66788888887 88889999999999999999988 889999999999999999999984 5656665542   


Q ss_pred             CCEEeCcCCcccccCCC
Q 046398          680 LNHLNVSNNLLTGKIPS  696 (794)
Q Consensus       680 L~~L~ls~N~l~g~iP~  696 (794)
                      =+.+.+.+|++..+|..
T Consensus       201 k~v~r~E~NPwv~pIae  217 (264)
T KOG0617|consen  201 KQVMRMEENPWVNPIAE  217 (264)
T ss_pred             HHHHhhhhCCCCChHHH
Confidence            23455667777666543

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.63  E-value=5.9e-18  Score=149.24  Aligned_cols=166  Identities=28%  Similarity=0.510  Sum_probs=147.9

Q ss_pred             cCCCCCCCEEEccCCcccccCChhhhhcCCCCcEEEcccccccccCCccccCCCCCCEEEccCCcCcccCCchhhccccc
Q 046398          483 FKNFSNLEVLNLGDNEFVGKIPTWMGEGFTSLLILILRSNKFDGFLPIQLCRLTSLQILDVANNSLSGTMPGCVNNFSAM  562 (794)
Q Consensus       483 l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L  562 (794)
                      +.++.+.+.|.+++|+++ .+|..+. .+.+|+.|++.+|++. .+|.+++.++.|+.|+++-|++. ..|..|+.++.|
T Consensus        29 Lf~~s~ITrLtLSHNKl~-~vppnia-~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~l  104 (264)
T KOG0617|consen   29 LFNMSNITRLTLSHNKLT-VVPPNIA-ELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPAL  104 (264)
T ss_pred             ccchhhhhhhhcccCcee-ecCCcHH-Hhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchh
Confidence            446778899999999998 8888888 6999999999999998 67889999999999999999987 778888877666


Q ss_pred             cccccccCCCCcccccccccccccceeeEEEEeccchhhcccccceeEEEcCCCcccc-ccChhhhcccCCCEEeccccc
Q 046398          563 ATIDSSHQSNAMSYFEVTAYDCEVLEDASIVMKGSMVEYNSILNLVRIIDVSKNNFSG-EIPMELTYLRGLQSLNLSHNI  641 (794)
Q Consensus       563 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~-~ip~~l~~l~~L~~L~Ls~N~  641 (794)
                                                                    +.|||++|++.. .+|..|..++.|+.|+|+.|.
T Consensus       105 ----------------------------------------------evldltynnl~e~~lpgnff~m~tlralyl~dnd  138 (264)
T KOG0617|consen  105 ----------------------------------------------EVLDLTYNNLNENSLPGNFFYMTTLRALYLGDND  138 (264)
T ss_pred             ----------------------------------------------hhhhccccccccccCCcchhHHHHHHHHHhcCCC
Confidence                                                          778888888864 578888899999999999999


Q ss_pred             ccccCCccccccCCCCEEeCCCCcCcccCcccccCCCCCCEEeCcCCcccccCCCCCcc
Q 046398          642 FTGQIPENIGNLISIESLDFSTNQLSSKISQSMSSLSFLNHLNVSNNLLTGKIPSSTQL  700 (794)
Q Consensus       642 l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~~~~~  700 (794)
                      +. .+|..++++++|+.|.+..|.+. ..|..++.++.|++|.+.+|.++--.|+.+++
T Consensus       139 fe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~vlppel~~l  195 (264)
T KOG0617|consen  139 FE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLTVLPPELANL  195 (264)
T ss_pred             cc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceeeecChhhhhh
Confidence            98 89999999999999999999998 58999999999999999999999887765443

>PLN03150 hypothetical protein; Provisional

Probab=99.56  E-value=9.3e-15  Score=166.88  Aligned_cols=116  Identities=34%  Similarity=0.603  Sum_probs=103.2

Q ss_pred             ceeEEEcCCCccccccChhhhcccCCCEEecccccccccCCccccccCCCCEEeCCCCcCcccCcccccCCCCCCEEeCc
Q 046398          607 LVRIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQIPENIGNLISIESLDFSTNQLSSKISQSMSSLSFLNHLNVS  686 (794)
Q Consensus       607 ~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls  686 (794)
                      .++.|+|++|.+.|.+|..++.+++|+.|+|++|.++|.+|..++.+++|+.|||++|+++|.+|+.++.+++|+.|+|+
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls  498 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN  498 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence            36889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcccccCCCCC--ccCccCcccccCC-CcCCCCCC-CCC
Q 046398          687 NNLLTGKIPSST--QLQSFDASCFVGN-NLCGPPLP-SCT  722 (794)
Q Consensus       687 ~N~l~g~iP~~~--~~~~~~~~~~~gn-~lcg~~~~-~c~  722 (794)
                      +|+++|.+|..-  .+.......+.+| .+||.|.. .|.
T Consensus       499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~~C~  538 (623)
T PLN03150        499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACG  538 (623)
T ss_pred             CCcccccCChHHhhccccCceEEecCCccccCCCCCCCCc
Confidence            999999999751  1223345568899 89997643 564

>PLN03150 hypothetical protein; Provisional

Probab=99.55  E-value=1.7e-14  Score=164.69  Aligned_cols=150  Identities=34%  Similarity=0.538  Sum_probs=110.7

Q ss_pred             CCCHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCc----ceeeeEecC--CC--CcEEEEEcCCCCCccccccchhhhhcc
Q 046398           30 GCTDSEREALLKLKQDLKDPSNRLGSWVVDGDCC----KWAEVVCSN--LT--GHVLQLSLRNPFRNDLRYATTEYEDYM  101 (794)
Q Consensus        30 ~~~~~~~~~ll~~k~~~~~~~~~~~~W~~~~~~c----~w~gv~c~~--~~--~~v~~L~l~~~~~~~~~~~~~~~~~~~  101 (794)
                      .+.++|.+||+++|+++.++..  .+|. +..||    .|.||.|..  ..  .+|+.|+|++                 
T Consensus       368 ~t~~~~~~aL~~~k~~~~~~~~--~~W~-g~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~-----------------  427 (623)
T PLN03150        368 KTLLEEVSALQTLKSSLGLPLR--FGWN-GDPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDN-----------------  427 (623)
T ss_pred             ccCchHHHHHHHHHHhcCCccc--CCCC-CCCCCCcccccccceeeccCCCCceEEEEEECCC-----------------
Confidence            4677899999999999976532  4795 44443    799999952  12  2578888877                 


Q ss_pred             ccccceeecccccCCCCCCEEeCCCCCCCCCCCCcccCCCCCCCEEEcCCCCCCCCCcccccCCccccccccCccccccc
Q 046398          102 RSMLSGNVNPSLVDLKHLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRCLDLSWSEYALQ  181 (794)
Q Consensus       102 ~~~l~g~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~~~~~~~  181 (794)
                       +.+.|.+|+.+.++++|+.|+|++|.+.+. +|..++.+++|++|+|++|++++.+|+.++++++|++|+|++|.    
T Consensus       428 -n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~-iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~----  501 (623)
T PLN03150        428 -QGLRGFIPNDISKLRHLQSINLSGNSIRGN-IPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNS----  501 (623)
T ss_pred             -CCccccCCHHHhCCCCCCEEECCCCcccCc-CChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCc----
Confidence             477888888888888888888888888874 78888888888888888888888888877777777777777665    


Q ss_pred             cccccccccCCCCccCCC-CCCCEEECcCCC
Q 046398          182 VHSFSWLSGQIPNRLGNL-TSLRHLDLSANK  211 (794)
Q Consensus       182 ~~~~~~~~~~lp~~l~~l-~~L~~L~Ls~n~  211 (794)
                            +.|.+|..+..+ .++..+++.+|.
T Consensus       502 ------l~g~iP~~l~~~~~~~~~l~~~~N~  526 (623)
T PLN03150        502 ------LSGRVPAALGGRLLHRASFNFTDNA  526 (623)
T ss_pred             ------ccccCChHHhhccccCceEEecCCc
Confidence                  456666666542 345555555554

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.27  E-value=1.5e-13  Score=143.60  Aligned_cols=169  Identities=25%  Similarity=0.413  Sum_probs=85.3

Q ss_pred             eEecccccCCCCCCcccCCCCCCCEEeccCCCCCCCcchhHHhccccceeccCcccCCCCCCCEEEccCCcccccCChhh
Q 046398          428 TLLLMSCHLGPQFPSWLHSQKNLSVLDISNARISDTIPRWFWNSIFQLSGIIPESFKNFSNLEVLNLGDNEFVGKIPTWM  507 (794)
Q Consensus       428 ~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~  507 (794)
                      ..+++.|.+. ++|..+..+..|+.+.+..|.+..                +|..++++..|++|||+.|+++ .+|..+
T Consensus        79 ~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r~----------------ip~~i~~L~~lt~l~ls~NqlS-~lp~~l  140 (722)
T KOG0532|consen   79 FADLSRNRFS-ELPEEACAFVSLESLILYHNCIRT----------------IPEAICNLEALTFLDLSSNQLS-HLPDGL  140 (722)
T ss_pred             hhhccccccc-cCchHHHHHHHHHHHHHHhcccee----------------cchhhhhhhHHHHhhhccchhh-cCChhh
Confidence            3444444443 344444445555555555554442                4455555555555555555554 455554


Q ss_pred             hhcCCCCcEEEcccccccccCCccccCCCCCCEEEccCCcCcccCCchhhccccccccccccCCCCcccccccccccccc
Q 046398          508 GEGFTSLLILILRSNKFDGFLPIQLCRLTSLQILDVANNSLSGTMPGCVNNFSAMATIDSSHQSNAMSYFEVTAYDCEVL  587 (794)
Q Consensus       508 ~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l  587 (794)
                      +  .--|+.|.+++|+++ .+|+.++....|..||.+.|.+. .+|..++.+.+|                         
T Consensus       141 C--~lpLkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~sl-------------------------  191 (722)
T KOG0532|consen  141 C--DLPLKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSL-------------------------  191 (722)
T ss_pred             h--cCcceeEEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHH-------------------------
Confidence            4  223555555555554 34445555555555555555554 333333333333                         


Q ss_pred             eeeEEEEeccchhhcccccceeEEEcCCCccccccChhhhcccCCCEEecccccccccCCccccccCCCCEEeCCCCcCc
Q 046398          588 EDASIVMKGSMVEYNSILNLVRIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQIPENIGNLISIESLDFSTNQLS  667 (794)
Q Consensus       588 ~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~  667 (794)
                                           +.|.+..|++. .+|+++..| .|..||+|+|+++ .||-.|.+|+.|++|-|.+|.+.
T Consensus       192 ---------------------r~l~vrRn~l~-~lp~El~~L-pLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq  247 (722)
T KOG0532|consen  192 ---------------------RDLNVRRNHLE-DLPEELCSL-PLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ  247 (722)
T ss_pred             ---------------------HHHHHhhhhhh-hCCHHHhCC-ceeeeecccCcee-ecchhhhhhhhheeeeeccCCCC
Confidence                                 34444555554 445555533 3555666666665 55555666666666666666555

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.18  E-value=2.8e-11  Score=132.57  Aligned_cols=182  Identities=36%  Similarity=0.528  Sum_probs=124.0

Q ss_pred             CCCCCCEEeccCCCCCCCcchhHHhccccceeccCcccCCCC-CCCEEEccCCcccccCChhhhhcCCCCcEEEcccccc
Q 046398          446 SQKNLSVLDISNARISDTIPRWFWNSIFQLSGIIPESFKNFS-NLEVLNLGDNEFVGKIPTWMGEGFTSLLILILRSNKF  524 (794)
Q Consensus       446 ~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~l~~~~p~~l~~l~-~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l  524 (794)
                      ..+.++.|++.+|.++.                ++......+ +|+.|++++|++. .+|..+. .+++|+.|++++|++
T Consensus       114 ~~~~l~~L~l~~n~i~~----------------i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~-~l~~L~~L~l~~N~l  175 (394)
T COG4886         114 ELTNLTSLDLDNNNITD----------------IPPLIGLLKSNLKELDLSDNKIE-SLPSPLR-NLPNLKNLDLSFNDL  175 (394)
T ss_pred             cccceeEEecCCccccc----------------Cccccccchhhcccccccccchh-hhhhhhh-ccccccccccCCchh
Confidence            34567777777777765                444444453 7777777777776 5654454 577777788888777


Q ss_pred             cccCCccccCCCCCCEEEccCCcCcccCCchhhccccccccccccCCCCcccccccccccccceeeEEEEeccchhhccc
Q 046398          525 DGFLPIQLCRLTSLQILDVANNSLSGTMPGCVNNFSAMATIDSSHQSNAMSYFEVTAYDCEVLEDASIVMKGSMVEYNSI  604 (794)
Q Consensus       525 ~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  604 (794)
                      . .+|......+.|+.|++++|++. .+|.....                                              
T Consensus       176 ~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~----------------------------------------------  207 (394)
T COG4886         176 S-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIEL----------------------------------------------  207 (394)
T ss_pred             h-hhhhhhhhhhhhhheeccCCccc-cCchhhhh----------------------------------------------
Confidence            7 34444446777888888888776 33332211                                              


Q ss_pred             ccceeEEEcCCCccccccChhhhcccCCCEEecccccccccCCccccccCCCCEEeCCCCcCcccCcccccCCCCCCEEe
Q 046398          605 LNLVRIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQIPENIGNLISIESLDFSTNQLSSKISQSMSSLSFLNHLN  684 (794)
Q Consensus       605 l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~  684 (794)
                      +..|+++++++|++. .++..+..+..+..+.+++|++. .++..++.+++++.|++++|.++...+  +..+.+++.|+
T Consensus       208 ~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~  283 (394)
T COG4886         208 LSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQISSISS--LGSLTNLRELD  283 (394)
T ss_pred             hhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-eccchhccccccceecccccccccccc--ccccCccCEEe
Confidence            222466777777544 45666777788888888888877 446777888888888888888875433  77888888888


Q ss_pred             CcCCcccccCCCC
Q 046398          685 VSNNLLTGKIPSS  697 (794)
Q Consensus       685 ls~N~l~g~iP~~  697 (794)
                      +++|.++..+|..
T Consensus       284 ~s~n~~~~~~~~~  296 (394)
T COG4886         284 LSGNSLSNALPLI  296 (394)
T ss_pred             ccCccccccchhh
Confidence            8888888776654

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.16  E-value=1.2e-12  Score=136.87  Aligned_cols=156  Identities=28%  Similarity=0.428  Sum_probs=86.0

Q ss_pred             CCCcccCCCCCCCEEeccCCCCCCCcchhHHhccccceeccCcccCCCCCCCEEEccCCcccccCChhhhhcCCCCcEEE
Q 046398          439 QFPSWLHSQKNLSVLDISNARISDTIPRWFWNSIFQLSGIIPESFKNFSNLEVLNLGDNEFVGKIPTWMGEGFTSLLILI  518 (794)
Q Consensus       439 ~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~  518 (794)
                      .+|..+..+..|+++|++.|+++.                +|..++.|+ |+.|-+++|+++ .+|..++ ..+.|..|+
T Consensus       112 ~ip~~i~~L~~lt~l~ls~NqlS~----------------lp~~lC~lp-Lkvli~sNNkl~-~lp~~ig-~~~tl~~ld  172 (722)
T KOG0532|consen  112 TIPEAICNLEALTFLDLSSNQLSH----------------LPDGLCDLP-LKVLIVSNNKLT-SLPEEIG-LLPTLAHLD  172 (722)
T ss_pred             ecchhhhhhhHHHHhhhccchhhc----------------CChhhhcCc-ceeEEEecCccc-cCCcccc-cchhHHHhh
Confidence            345555566666666666666553                455555554 666666666665 5666665 556666666


Q ss_pred             cccccccccCCccccCCCCCCEEEccCCcCcccCCchhhccccccccccccCCCCcccccccccccccceeeEEEEeccc
Q 046398          519 LRSNKFDGFLPIQLCRLTSLQILDVANNSLSGTMPGCVNNFSAMATIDSSHQSNAMSYFEVTAYDCEVLEDASIVMKGSM  598 (794)
Q Consensus       519 L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  598 (794)
                      .+.|.+. .+|..++++.+|+.|.+..|++. .+|..+..++                                      
T Consensus       173 ~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~Lp--------------------------------------  212 (722)
T KOG0532|consen  173 VSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSLP--------------------------------------  212 (722)
T ss_pred             hhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCCc--------------------------------------
Confidence            6666665 34555666666666666666655 2333222111                                      


Q ss_pred             hhhcccccceeEEEcCCCccccccChhhhcccCCCEEecccccccccCCcccc---ccCCCCEEeCCCC
Q 046398          599 VEYNSILNLVRIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQIPENIG---NLISIESLDFSTN  664 (794)
Q Consensus       599 ~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~---~l~~L~~L~Ls~N  664 (794)
                               |..||+|+|+++ .||-.|..++.|++|-|.+|.+. ..|..+.   ...--++|+..-+
T Consensus       213 ---------Li~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~  270 (722)
T KOG0532|consen  213 ---------LIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQAC  270 (722)
T ss_pred             ---------eeeeecccCcee-ecchhhhhhhhheeeeeccCCCC-CChHHHHhccceeeeeeecchhc
Confidence                     255666666665 56666666666666666666665 4444332   2223345555555

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.14  E-value=8.2e-11  Score=128.87  Aligned_cols=158  Identities=30%  Similarity=0.516  Sum_probs=113.0

Q ss_pred             CCCEEeccCCCCCCCcchhHHhccccceeccCcccCCCCCCCEEEccCCcccccCChhhhhcCCCCcEEEcccccccccC
Q 046398          449 NLSVLDISNARISDTIPRWFWNSIFQLSGIIPESFKNFSNLEVLNLGDNEFVGKIPTWMGEGFTSLLILILRSNKFDGFL  528 (794)
Q Consensus       449 ~L~~L~Ls~n~l~~~~p~~~~~~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~  528 (794)
                      +|+.|++++|++..                +|..+..+++|+.|++++|+++ .+|.... ..++|+.|++++|++. .+
T Consensus       141 nL~~L~l~~N~i~~----------------l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~-~~~~L~~L~ls~N~i~-~l  201 (394)
T COG4886         141 NLKELDLSDNKIES----------------LPSPLRNLPNLKNLDLSFNDLS-DLPKLLS-NLSNLNNLDLSGNKIS-DL  201 (394)
T ss_pred             hcccccccccchhh----------------hhhhhhccccccccccCCchhh-hhhhhhh-hhhhhhheeccCCccc-cC
Confidence            67777777777764                4455677888888888888887 6776554 4778888888888887 45


Q ss_pred             CccccCCCCCCEEEccCCcCcccCCchhhccccccccccccCCCCcccccccccccccceeeEEEEeccchhhcccccce
Q 046398          529 PIQLCRLTSLQILDVANNSLSGTMPGCVNNFSAMATIDSSHQSNAMSYFEVTAYDCEVLEDASIVMKGSMVEYNSILNLV  608 (794)
Q Consensus       529 p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L  608 (794)
                      |........|+++++++|++. ..+..+.+++.+                                              
T Consensus       202 ~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l----------------------------------------------  234 (394)
T COG4886         202 PPEIELLSALEELDLSNNSII-ELLSSLSNLKNL----------------------------------------------  234 (394)
T ss_pred             chhhhhhhhhhhhhhcCCcce-ecchhhhhcccc----------------------------------------------
Confidence            555555666888888888633 233333333333                                              


Q ss_pred             eEEEcCCCccccccChhhhcccCCCEEecccccccccCCccccccCCCCEEeCCCCcCcccCccccc
Q 046398          609 RIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQIPENIGNLISIESLDFSTNQLSSKISQSMS  675 (794)
Q Consensus       609 ~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~  675 (794)
                      ..+.+++|++. .++..++.+++++.|++++|.++ .++. ++.+.+++.|++++|.++..+|....
T Consensus       235 ~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~-~i~~-~~~~~~l~~L~~s~n~~~~~~~~~~~  298 (394)
T COG4886         235 SGLELSNNKLE-DLPESIGNLSNLETLDLSNNQIS-SISS-LGSLTNLRELDLSGNSLSNALPLIAL  298 (394)
T ss_pred             cccccCCceee-eccchhccccccceecccccccc-cccc-ccccCccCEEeccCccccccchhhhc
Confidence            45557777776 33667788888999999999998 5555 88889999999999999877665543

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.03  E-value=2.9e-11  Score=123.01  Aligned_cols=210  Identities=22%  Similarity=0.233  Sum_probs=131.1

Q ss_pred             ccceEecccccCCCCCC-cccCCCCCCCEEeccCCCCCCCcchhHHhccccceeccCcccCCCCCCCEEEccCCcccccC
Q 046398          425 QLKTLLLMSCHLGPQFP-SWLHSQKNLSVLDISNARISDTIPRWFWNSIFQLSGIIPESFKNFSNLEVLNLGDNEFVGKI  503 (794)
Q Consensus       425 ~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~i  503 (794)
                      +|+.+.+.++....... .....+++++.||++.|-+..--             .+......+|+|+.|+++.|++.-..
T Consensus       122 kL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~-------------~v~~i~eqLp~Le~LNls~Nrl~~~~  188 (505)
T KOG3207|consen  122 KLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWF-------------PVLKIAEQLPSLENLNLSSNRLSNFI  188 (505)
T ss_pred             hhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHH-------------HHHHHHHhcccchhcccccccccCCc
Confidence            44444444444332111 34556778888888888655311             12233446778888888888876433


Q ss_pred             ChhhhhcCCCCcEEEccccccccc-CCccccCCCCCCEEEccCCcCcccCCchhhccccccccccccCCCCccccccccc
Q 046398          504 PTWMGEGFTSLLILILRSNKFDGF-LPIQLCRLTSLQILDVANNSLSGTMPGCVNNFSAMATIDSSHQSNAMSYFEVTAY  582 (794)
Q Consensus       504 p~~~~~~l~~L~~L~L~~n~l~~~-~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~  582 (794)
                      ....-..++.|+.|.|++|.++.. +......+|+|+.|+|..|...+.-...                           
T Consensus       189 ~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~---------------------------  241 (505)
T KOG3207|consen  189 SSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATS---------------------------  241 (505)
T ss_pred             cccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecch---------------------------
Confidence            333333567788888888887632 2223446778888888887522111111                           


Q ss_pred             ccccceeeEEEEeccchhhcccccceeEEEcCCCcccccc-ChhhhcccCCCEEeccccccccc-CCcc-----ccccCC
Q 046398          583 DCEVLEDASIVMKGSMVEYNSILNLVRIIDVSKNNFSGEI-PMELTYLRGLQSLNLSHNIFTGQ-IPEN-----IGNLIS  655 (794)
Q Consensus       583 ~~~~l~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~i-p~~l~~l~~L~~L~Ls~N~l~~~-ip~~-----l~~l~~  655 (794)
                                         ...+..|+.|||++|++...- -...+.++.|+.|+++.+.++.. +|+.     ....++
T Consensus       242 -------------------~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~k  302 (505)
T KOG3207|consen  242 -------------------TKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPK  302 (505)
T ss_pred             -------------------hhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhccccc
Confidence                               122445688899999886321 14567888999999999988742 2443     456789


Q ss_pred             CCEEeCCCCcCccc-CcccccCCCCCCEEeCcCCccccc
Q 046398          656 IESLDFSTNQLSSK-ISQSMSSLSFLNHLNVSNNLLTGK  693 (794)
Q Consensus       656 L~~L~Ls~N~l~~~-~p~~l~~l~~L~~L~ls~N~l~g~  693 (794)
                      |++|++++|++..- .-..+..+.+|+.|.+-.|+++.+
T Consensus       303 L~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~e  341 (505)
T KOG3207|consen  303 LEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNKE  341 (505)
T ss_pred             ceeeecccCccccccccchhhccchhhhhhccccccccc
Confidence            99999999998531 113455677888888888888754

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.99  E-value=7.8e-11  Score=116.84  Aligned_cols=260  Identities=28%  Similarity=0.322  Sum_probs=136.3

Q ss_pred             ccccCCCCCCEEeCCCCCCCCC---CCCcccCCCCCCCEEEcCCCCCCC----CCcccccCCccccccccCccccccccc
Q 046398          111 PSLVDLKHLTHLDLSGNDFQGI---RIPKYLGSLKNLRYLNLSGAEFAG----IIPHQLGNLSNLRCLDLSWSEYALQVH  183 (794)
Q Consensus       111 ~~l~~l~~L~~L~Ls~n~l~~~---~~p~~~~~l~~L~~L~Ls~n~l~~----~~p~~l~~l~~L~~L~Ls~~~~~~~~~  183 (794)
                      +.+..+..++.++||+|.|...   .+...+.+.++|+..++|.- ++|    .+|+.+..                   
T Consensus        24 ~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~-ftGR~~~Ei~e~L~~-------------------   83 (382)
T KOG1909|consen   24 EELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDM-FTGRLKDEIPEALKM-------------------   83 (382)
T ss_pred             HHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhh-hcCCcHHHHHHHHHH-------------------
Confidence            4455677777777777776531   12334555667777776653 222    23322110                   


Q ss_pred             cccccccCCCCccCCCCCCCEEECcCCCCCCCCCcc----ccCCCCCCeEeeeccCCCCCCCccccCCCCCCcEEEccCC
Q 046398          184 SFSWLSGQIPNRLGNLTSLRHLDLSANKFNSTTAGW----LSKFNHLEFLSLSSNGLQGTISSIGLENLTSIKTIDLSLN  259 (794)
Q Consensus       184 ~~~~~~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~~~----l~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~~  259 (794)
                              +.+.+..+++|++||||.|-+....+..    +..+..|++|.|.+|.+. ......++  ..|..|..   
T Consensus        84 --------l~~aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg-~~ag~~l~--~al~~l~~---  149 (382)
T KOG1909|consen   84 --------LSKALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLG-PEAGGRLG--RALFELAV---  149 (382)
T ss_pred             --------HHHHHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCC-hhHHHHHH--HHHHHHHH---
Confidence                    1123344567777777777766554433    345566777777666653 11100000  00111110   


Q ss_pred             CCCCCCCchhhhccCCCCEEEccCCCCCcchHHHHHhhhhcCcCCccEEEeeccccccc----ccccccCCCCCCEEEcc
Q 046398          260 FELGGPIPTSFVRLCELTSIDVSDVKLSQDLSQVLDILSACGASALESLVFSSSQISGH----LTSQLGQFKSLRTLSLD  335 (794)
Q Consensus       260 ~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~  335 (794)
                             ......-++|+.+...+|.+.......+...- ...+.|+.+.+..|.|...    ....+..+++|+.|||.
T Consensus       150 -------~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~-~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~  221 (382)
T KOG1909|consen  150 -------NKKAASKPKLRVFICGRNRLENGGATALAEAF-QSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLR  221 (382)
T ss_pred             -------HhccCCCcceEEEEeeccccccccHHHHHHHH-HhccccceEEEecccccCchhHHHHHHHHhCCcceeeecc
Confidence                   01122334566666666666544333322111 1123667777776665421    22345667788888888


Q ss_pred             CCcCcCC----CCCCcCCCCCCCEEEccCCcccccCCccc-----cCCCCCCeEeccCcccccc---cChhhhcCCCCCC
Q 046398          336 DNCISGP----LPPALGDLSSLTRLDLSRNMLNGSIPLSL-----GKISHLEYLDLSNNKMNGT---LSEIHFVNLTKLT  403 (794)
Q Consensus       336 ~n~l~~~----~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l-----~~l~~L~~L~Ls~N~l~~~---~~~~~~~~l~~L~  403 (794)
                      +|.++..    +...+..+++|++|++++|.+...-..++     ...|+|++|.+.+|.++..   .-.......+.|.
T Consensus       222 DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~  301 (382)
T KOG1909|consen  222 DNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLE  301 (382)
T ss_pred             cchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhH
Confidence            8777643    22345556777888888777764332222     2357777787777777521   1112334456666


Q ss_pred             EEECcCCcc
Q 046398          404 WFSASGNSL  412 (794)
Q Consensus       404 ~L~ls~n~l  412 (794)
                      .|++++|.+
T Consensus       302 kLnLngN~l  310 (382)
T KOG1909|consen  302 KLNLNGNRL  310 (382)
T ss_pred             HhcCCcccc
Confidence            666666665

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.97  E-value=1.5e-10  Score=111.89  Aligned_cols=131  Identities=23%  Similarity=0.284  Sum_probs=87.6

Q ss_pred             CCCcEEEcccccccccCCccccCCCCCCEEEccCCcCcccCCchhhccccccccccccCCCCcccccccccccccceeeE
Q 046398          512 TSLLILILRSNKFDGFLPIQLCRLTSLQILDVANNSLSGTMPGCVNNFSAMATIDSSHQSNAMSYFEVTAYDCEVLEDAS  591 (794)
Q Consensus       512 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~  591 (794)
                      ..|+.+||++|.++ .+.++..-.|.++.|++|+|.+...     .++                                
T Consensus       284 q~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v-----~nL--------------------------------  325 (490)
T KOG1259|consen  284 QELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV-----QNL--------------------------------  325 (490)
T ss_pred             hhhhhccccccchh-hhhhhhhhccceeEEeccccceeee-----hhh--------------------------------
Confidence            34666777777666 3445555666777777777766521     111                                


Q ss_pred             EEEeccchhhcccccceeEEEcCCCccccccChhhhcccCCCEEecccccccccCCccccccCCCCEEeCCCCcCcccC-
Q 046398          592 IVMKGSMVEYNSILNLVRIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQIPENIGNLISIESLDFSTNQLSSKI-  670 (794)
Q Consensus       592 ~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~-  670 (794)
                                 ..+++|+.||||+|.++ .+...-..+-+++.|+|+.|.|...  +.++.+-+|..||+++|+|...- 
T Consensus       326 -----------a~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~lde  391 (490)
T KOG1259|consen  326 -----------AELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDE  391 (490)
T ss_pred             -----------hhcccceEeecccchhH-hhhhhHhhhcCEeeeehhhhhHhhh--hhhHhhhhheeccccccchhhHHH
Confidence                       12344577777777776 3443444567788888888887633  55778888888888888886532 


Q ss_pred             cccccCCCCCCEEeCcCCcccccC
Q 046398          671 SQSMSSLSFLNHLNVSNNLLTGKI  694 (794)
Q Consensus       671 p~~l~~l~~L~~L~ls~N~l~g~i  694 (794)
                      -..+++|+.|+.+.|.+|++.+.+
T Consensus       392 V~~IG~LPCLE~l~L~~NPl~~~v  415 (490)
T KOG1259|consen  392 VNHIGNLPCLETLRLTGNPLAGSV  415 (490)
T ss_pred             hcccccccHHHHHhhcCCCccccc
Confidence            246788888999999999888764

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.91  E-value=1.1e-10  Score=115.94  Aligned_cols=146  Identities=19%  Similarity=0.193  Sum_probs=89.1

Q ss_pred             CCCCCCeEeccCcccccccC---hhhhcCCCCCCEEECcCCcceeEcCCCCcCccccceEecccccCCCCCCcccCCCCC
Q 046398          373 KISHLEYLDLSNNKMNGTLS---EIHFVNLTKLTWFSASGNSLILQVNPNWVPPFQLKTLLLMSCHLGPQFPSWLHSQKN  449 (794)
Q Consensus       373 ~l~~L~~L~Ls~N~l~~~~~---~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~  449 (794)
                      .-+.|+++...+|++...-.   ...|...+.|+.+.++.|.+.....                    ......+..+++
T Consensus       155 ~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~--------------------~al~eal~~~~~  214 (382)
T KOG1909|consen  155 SKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGV--------------------TALAEALEHCPH  214 (382)
T ss_pred             CCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchh--------------------HHHHHHHHhCCc
Confidence            34566667666666642110   1134444555555555554321100                    012334667788


Q ss_pred             CCEEeccCCCCCCCcchhHHhccccceeccCcccCCCCCCCEEEccCCcccccCChhh----hhcCCCCcEEEccccccc
Q 046398          450 LSVLDISNARISDTIPRWFWNSIFQLSGIIPESFKNFSNLEVLNLGDNEFVGKIPTWM----GEGFTSLLILILRSNKFD  525 (794)
Q Consensus       450 L~~L~Ls~n~l~~~~p~~~~~~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~----~~~l~~L~~L~L~~n~l~  525 (794)
                      |+.|||.+|.++..-..           .+...+..+++|+.|++++|.+...-...+    ....|+|++|.+.+|.++
T Consensus       215 LevLdl~DNtft~egs~-----------~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt  283 (382)
T KOG1909|consen  215 LEVLDLRDNTFTLEGSV-----------ALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEIT  283 (382)
T ss_pred             ceeeecccchhhhHHHH-----------HHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhH
Confidence            88888888877642221           233456677888899999888765443332    335688999999999887


Q ss_pred             cc----CCccccCCCCCCEEEccCCcCc
Q 046398          526 GF----LPIQLCRLTSLQILDVANNSLS  549 (794)
Q Consensus       526 ~~----~p~~~~~l~~L~~L~Ls~N~l~  549 (794)
                      ..    +...+...+.|..|+|++|++.
T Consensus       284 ~da~~~la~~~~ek~dL~kLnLngN~l~  311 (382)
T KOG1909|consen  284 RDAALALAACMAEKPDLEKLNLNGNRLG  311 (382)
T ss_pred             HHHHHHHHHHHhcchhhHHhcCCccccc
Confidence            42    2334556889999999999984

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.90  E-value=3e-10  Score=109.83  Aligned_cols=127  Identities=28%  Similarity=0.247  Sum_probs=58.8

Q ss_pred             CccEEEeecccccccccccccCCCCCCEEEccCCcCcCCCCCCcCCCCCCCEEEccCCcccccCCccccCCCCCCeEecc
Q 046398          304 ALESLVFSSSQISGHLTSQLGQFKSLRTLSLDDNCISGPLPPALGDLSSLTRLDLSRNMLNGSIPLSLGKISHLEYLDLS  383 (794)
Q Consensus       304 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls  383 (794)
                      .|+++||++|.|+. +.++..-.|.++.|++++|.+...  ..+..+++|+.|||++|.++ .+..+-..+-+++.|.|+
T Consensus       285 ~LtelDLS~N~I~~-iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La  360 (490)
T KOG1259|consen  285 ELTELDLSGNLITQ-IDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLA  360 (490)
T ss_pred             hhhhccccccchhh-hhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhH-hhhhhHhhhcCEeeeehh
Confidence            34444444444442 223333345555555555555422  22444555555555555554 222233344455555555


Q ss_pred             CcccccccChhhhcCCCCCCEEECcCCcceeE-cCCCCcCccccceEecccccCC
Q 046398          384 NNKMNGTLSEIHFVNLTKLTWFSASGNSLILQ-VNPNWVPPFQLKTLLLMSCHLG  437 (794)
Q Consensus       384 ~N~l~~~~~~~~~~~l~~L~~L~ls~n~l~~~-~~~~~~~~~~L~~L~L~~n~l~  437 (794)
                      .|.+. .++  .+..+.+|..||+++|++... ....++.++.|+.+.+.+|.+.
T Consensus       361 ~N~iE-~LS--GL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~  412 (490)
T KOG1259|consen  361 QNKIE-TLS--GLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLA  412 (490)
T ss_pred             hhhHh-hhh--hhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcc
Confidence            55544 222  234444555555555554322 1223445555555555555554

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.89  E-value=8.2e-10  Score=128.98  Aligned_cols=270  Identities=26%  Similarity=0.303  Sum_probs=140.0

Q ss_pred             CCCCEEeCCCCC--CCCCCCCcccCCCCCCCEEEcCCCCCCCCCcccccCCccccccccCccccccccccccccccCCCC
Q 046398          117 KHLTHLDLSGND--FQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRCLDLSWSEYALQVHSFSWLSGQIPN  194 (794)
Q Consensus       117 ~~L~~L~Ls~n~--l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~~~~lp~  194 (794)
                      +.|++|-+..|.  +..+ -+++|..++.|++|||++|.=-+.+|+.+++|-+||+|+++++.+.           .+|.
T Consensus       545 ~~L~tLll~~n~~~l~~i-s~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-----------~LP~  612 (889)
T KOG4658|consen  545 PKLRTLLLQRNSDWLLEI-SGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-----------HLPS  612 (889)
T ss_pred             CccceEEEeecchhhhhc-CHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-----------ccch
Confidence            356666666664  3322 2344666777777777776555567777777777777777766654           6777


Q ss_pred             ccCCCCCCCEEECcCCCCCCCCCccccCCCCCCeEeeeccCCCC-CCCccccCCCCCCcEEEccCCCCCCCCCchhhhcc
Q 046398          195 RLGNLTSLRHLDLSANKFNSTTAGWLSKFNHLEFLSLSSNGLQG-TISSIGLENLTSIKTIDLSLNFELGGPIPTSFVRL  273 (794)
Q Consensus       195 ~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~-~i~~~~l~~l~~L~~L~L~~~~~~~~~~~~~l~~l  273 (794)
                      .+++|.+|.+|++..+.....++.....|++|++|.+....... ......+.++..|+.+......   ..+...+..+
T Consensus       613 ~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s---~~~~e~l~~~  689 (889)
T KOG4658|consen  613 GLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISS---VLLLEDLLGM  689 (889)
T ss_pred             HHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecch---hHhHhhhhhh
Confidence            77777777777777665555556656667777777776554211 1111123344444444443111   0111111112


Q ss_pred             CCCC----EEEccCCCCCcchHHHHHhhhhcCcCCccEEEeecccccccccccccC------CCCCCEEEccCCcCcCCC
Q 046398          274 CELT----SIDVSDVKLSQDLSQVLDILSACGASALESLVFSSSQISGHLTSQLGQ------FKSLRTLSLDDNCISGPL  343 (794)
Q Consensus       274 ~~L~----~L~l~~~~l~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~~l~~------l~~L~~L~L~~n~l~~~~  343 (794)
                      .+|.    .+.+..+... ..+..+.     .+.+|+.|.+.++.+..........      ++++..+.+.++... ..
T Consensus       690 ~~L~~~~~~l~~~~~~~~-~~~~~~~-----~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~-r~  762 (889)
T KOG4658|consen  690 TRLRSLLQSLSIEGCSKR-TLISSLG-----SLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHML-RD  762 (889)
T ss_pred             HHHHHHhHhhhhcccccc-eeecccc-----cccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccc-cc
Confidence            2211    1111111110 0111112     2337777887777765433222111      233333333343332 23


Q ss_pred             CCCcCCCCCCCEEEccCCcccccCCccccCCCCCCeEeccCcccccccChhhhcCCCCCCEEECc
Q 046398          344 PPALGDLSSLTRLDLSRNMLNGSIPLSLGKISHLEYLDLSNNKMNGTLSEIHFVNLTKLTWFSAS  408 (794)
Q Consensus       344 p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~ls  408 (794)
                      +.+....++|+.|.+..+.....+.+....+..++.+.+..+.+.+.--....+.++++..+.+.
T Consensus       763 l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l~~~~~l~~l~~i~~~~l~  827 (889)
T KOG4658|consen  763 LTWLLFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLEGLRMLCSLGGLPQLYWLPLS  827 (889)
T ss_pred             cchhhccCcccEEEEecccccccCCCHHHHhhhcccEEecccccccceeeecCCCCceeEecccC
Confidence            33344568899999988877766666666667777666666666543111133444444444443

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.88  E-value=1.2e-09  Score=102.10  Aligned_cols=109  Identities=34%  Similarity=0.447  Sum_probs=28.4

Q ss_pred             ccCCCCCCEEeCCCCCCCCCCCCcccC-CCCCCCEEEcCCCCCCCCCcccccCCccccccccCccccccccccccccccC
Q 046398          113 LVDLKHLTHLDLSGNDFQGIRIPKYLG-SLKNLRYLNLSGAEFAGIIPHQLGNLSNLRCLDLSWSEYALQVHSFSWLSGQ  191 (794)
Q Consensus       113 l~~l~~L~~L~Ls~n~l~~~~~p~~~~-~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~~~~  191 (794)
                      +.+..++++|+|++|.|+.+   +.++ .+.+|+.|+|++|.++..  +.+..+++|++|++++|++.           .
T Consensus        15 ~~n~~~~~~L~L~~n~I~~I---e~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~-----------~   78 (175)
T PF14580_consen   15 YNNPVKLRELNLRGNQISTI---ENLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRIS-----------S   78 (175)
T ss_dssp             ------------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS--------------S
T ss_pred             cccccccccccccccccccc---cchhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCC-----------c
Confidence            34445677777777777643   2344 466777777777777632  23555666666666666544           2


Q ss_pred             CCCcc-CCCCCCCEEECcCCCCCCCC-CccccCCCCCCeEeeeccCCC
Q 046398          192 IPNRL-GNLTSLRHLDLSANKFNSTT-AGWLSKFNHLEFLSLSSNGLQ  237 (794)
Q Consensus       192 lp~~l-~~l~~L~~L~Ls~n~l~~~~-~~~l~~l~~L~~L~L~~n~l~  237 (794)
                      +...+ ..+++|++|++++|++.... -..+..+++|++|++.+|++.
T Consensus        79 i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~  126 (175)
T PF14580_consen   79 ISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVC  126 (175)
T ss_dssp             -CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred             cccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence            33223 23566666666666654422 133445555555555555543

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.86  E-value=3e-09  Score=99.46  Aligned_cols=78  Identities=27%  Similarity=0.307  Sum_probs=32.7

Q ss_pred             eeEEEcCCCccccccChhh-hcccCCCEEecccccccccC-CccccccCCCCEEeCCCCcCcccC---cccccCCCCCCE
Q 046398          608 VRIIDVSKNNFSGEIPMEL-TYLRGLQSLNLSHNIFTGQI-PENIGNLISIESLDFSTNQLSSKI---SQSMSSLSFLNH  682 (794)
Q Consensus       608 L~~LdLs~N~l~~~ip~~l-~~l~~L~~L~Ls~N~l~~~i-p~~l~~l~~L~~L~Ls~N~l~~~~---p~~l~~l~~L~~  682 (794)
                      |+.|++++|+++ .+++.+ ..+++|++|+|++|+|...- -..+..+++|+.|+|.+|+++...   ...+..+|+|+.
T Consensus        66 L~~L~L~~N~I~-~i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~  144 (175)
T PF14580_consen   66 LKTLDLSNNRIS-SISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKV  144 (175)
T ss_dssp             --EEE--SS----S-CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SE
T ss_pred             hhhcccCCCCCC-ccccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhhe
Confidence            356666666665 343334 35677777777777776321 134666777788888888776431   123556778888


Q ss_pred             EeCc
Q 046398          683 LNVS  686 (794)
Q Consensus       683 L~ls  686 (794)
                      ||-.
T Consensus       145 LD~~  148 (175)
T PF14580_consen  145 LDGQ  148 (175)
T ss_dssp             ETTE
T ss_pred             eCCE
Confidence            7743

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.85  E-value=6.5e-10  Score=113.40  Aligned_cols=211  Identities=27%  Similarity=0.245  Sum_probs=128.4

Q ss_pred             cCCccccccccCccccccccccccccccCCC--CccCCCCCCCEEECcCCCCCCCCC--ccccCCCCCCeEeeeccCCCC
Q 046398          163 GNLSNLRCLDLSWSEYALQVHSFSWLSGQIP--NRLGNLTSLRHLDLSANKFNSTTA--GWLSKFNHLEFLSLSSNGLQG  238 (794)
Q Consensus       163 ~~l~~L~~L~Ls~~~~~~~~~~~~~~~~~lp--~~l~~l~~L~~L~Ls~n~l~~~~~--~~l~~l~~L~~L~L~~n~l~~  238 (794)
                      +++++|+...|.++...           ..+  .....|++++.||||.|-+....+  .....+|+|+.|+++.|.+..
T Consensus       118 sn~kkL~~IsLdn~~V~-----------~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~  186 (505)
T KOG3207|consen  118 SNLKKLREISLDNYRVE-----------DAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSN  186 (505)
T ss_pred             hhHHhhhheeecCcccc-----------ccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccC
Confidence            56888888888776654           222  356678999999999987765432  345678899999999888763


Q ss_pred             CCCccccCCCCCCcEEEccCCCCCCCCCchhhhccCCCCEEEccCCCCCcchHHHHHhhhhcCcCCccEEEeeccccccc
Q 046398          239 TISSIGLENLTSIKTIDLSLNFELGGPIPTSFVRLCELTSIDVSDVKLSQDLSQVLDILSACGASALESLVFSSSQISGH  318 (794)
Q Consensus       239 ~i~~~~l~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~  318 (794)
                      ......-.                         .+++|+.|.++.|.++...-.++.    ..+|+|+.|+|..|.....
T Consensus       187 ~~~s~~~~-------------------------~l~~lK~L~l~~CGls~k~V~~~~----~~fPsl~~L~L~~N~~~~~  237 (505)
T KOG3207|consen  187 FISSNTTL-------------------------LLSHLKQLVLNSCGLSWKDVQWIL----LTFPSLEVLYLEANEIILI  237 (505)
T ss_pred             Cccccchh-------------------------hhhhhheEEeccCCCCHHHHHHHH----HhCCcHHHhhhhcccccce
Confidence            32221111                         344667777777777632222211    1234777888877753333


Q ss_pred             ccccccCCCCCCEEEccCCcCcCCC-CCCcCCCCCCCEEEccCCccccc-CCcc-----ccCCCCCCeEeccCccccccc
Q 046398          319 LTSQLGQFKSLRTLSLDDNCISGPL-PPALGDLSSLTRLDLSRNMLNGS-IPLS-----LGKISHLEYLDLSNNKMNGTL  391 (794)
Q Consensus       319 ~~~~l~~l~~L~~L~L~~n~l~~~~-p~~l~~l~~L~~L~Ls~n~l~~~-~p~~-----l~~l~~L~~L~Ls~N~l~~~~  391 (794)
                      .......+..|++|||++|.+.... -...+.++.|+.|+++.+.+... .|+.     ...+++|++|++..|++..--
T Consensus       238 ~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~  317 (505)
T KOG3207|consen  238 KATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWR  317 (505)
T ss_pred             ecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCcccccc
Confidence            3333444667888888888776321 13356677888888888877632 2222     245677888888888875222


Q ss_pred             ChhhhcCCCCCCEEECcCCcce
Q 046398          392 SEIHFVNLTKLTWFSASGNSLI  413 (794)
Q Consensus       392 ~~~~~~~l~~L~~L~ls~n~l~  413 (794)
                      ....+..+++|+.+.+..|.+.
T Consensus       318 sl~~l~~l~nlk~l~~~~n~ln  339 (505)
T KOG3207|consen  318 SLNHLRTLENLKHLRITLNYLN  339 (505)
T ss_pred             ccchhhccchhhhhhccccccc
Confidence            2223444555666665555553

>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=98.81  E-value=5.1e-09  Score=73.27  Aligned_cols=39  Identities=44%  Similarity=0.916  Sum_probs=30.9

Q ss_pred             HHHHHHHHHHHhcCC-CCCCCCCCCCCC--CCCcceeeeEec
Q 046398           33 DSEREALLKLKQDLK-DPSNRLGSWVVD--GDCCKWAEVVCS   71 (794)
Q Consensus        33 ~~~~~~ll~~k~~~~-~~~~~~~~W~~~--~~~c~w~gv~c~   71 (794)
                      ++|++||++||+++. +|.+.+.+|+..  .+||.|.||+|+
T Consensus         2 ~~d~~aLl~~k~~l~~~~~~~l~~W~~~~~~~~C~W~GV~Cd   43 (43)
T PF08263_consen    2 NQDRQALLAFKKSLNNDPSGVLSSWNPSSDSDPCSWSGVTCD   43 (43)
T ss_dssp             HHHHHHHHHHHHCTT-SC-CCCTT--TT--S-CCCSTTEEE-
T ss_pred             cHHHHHHHHHHHhcccccCcccccCCCcCCCCCeeeccEEeC
Confidence            689999999999998 577899999855  799999999995

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.80  E-value=3.8e-09  Score=123.52  Aligned_cols=271  Identities=22%  Similarity=0.222  Sum_probs=165.7

Q ss_pred             ccCCCCCCEEeCCCCCCCCCCCCcccCCCCCCCEEEcCCCC--CCCCCcccccCCccccccccCcccccccccccccccc
Q 046398          113 LVDLKHLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAE--FAGIIPHQLGNLSNLRCLDLSWSEYALQVHSFSWLSG  190 (794)
Q Consensus       113 l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~--l~~~~p~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~~~  190 (794)
                      ..+....|...+.+|.+.  .++.... .++|++|-+..|.  +....++.|..++.|++|||++|.          --+
T Consensus       519 ~~~~~~~rr~s~~~~~~~--~~~~~~~-~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~----------~l~  585 (889)
T KOG4658|consen  519 VKSWNSVRRMSLMNNKIE--HIAGSSE-NPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNS----------SLS  585 (889)
T ss_pred             ccchhheeEEEEeccchh--hccCCCC-CCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCC----------ccC
Confidence            445577889999999887  3455443 4589999999996  554555568899999999999865          335


Q ss_pred             CCCCccCCCCCCCEEECcCCCCCCCCCccccCCCCCCeEeeeccCCCCCCCccccCCCCCCcEEEccCCC-CCCCCCchh
Q 046398          191 QIPNRLGNLTSLRHLDLSANKFNSTTAGWLSKFNHLEFLSLSSNGLQGTISSIGLENLTSIKTIDLSLNF-ELGGPIPTS  269 (794)
Q Consensus       191 ~lp~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~~~-~~~~~~~~~  269 (794)
                      .+|..+++|-+||+|++++..+. ..|..+.++++|.+|++..+.-...++. ....+++|++|.+.... ..+...-..
T Consensus       586 ~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~-i~~~L~~Lr~L~l~~s~~~~~~~~l~e  663 (889)
T KOG4658|consen  586 KLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPG-ILLELQSLRVLRLPRSALSNDKLLLKE  663 (889)
T ss_pred             cCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheeccccccccccccc-hhhhcccccEEEeeccccccchhhHHh
Confidence            89999999999999999999987 6677899999999999998876545544 56679999999997443 333333445


Q ss_pred             hhccCCCCEEEccCCCCCcchHHHHHhhhhcCcCCccEEEeecccccccccccccCCCCCCEEEccCCcCcCCCCCCcCC
Q 046398          270 FVRLCELTSIDVSDVKLSQDLSQVLDILSACGASALESLVFSSSQISGHLTSQLGQFKSLRTLSLDDNCISGPLPPALGD  349 (794)
Q Consensus       270 l~~l~~L~~L~l~~~~l~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~  349 (794)
                      +.++.+|+.+.......  .+-..+..... -....+.+.+.++.. ...+..+..+.+|+.|.+.++.+......+...
T Consensus       664 l~~Le~L~~ls~~~~s~--~~~e~l~~~~~-L~~~~~~l~~~~~~~-~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~  739 (889)
T KOG4658|consen  664 LENLEHLENLSITISSV--LLLEDLLGMTR-LRSLLQSLSIEGCSK-RTLISSLGSLGNLEELSILDCGISEIVIEWEES  739 (889)
T ss_pred             hhcccchhhheeecchh--HhHhhhhhhHH-HHHHhHhhhhccccc-ceeecccccccCcceEEEEcCCCchhhcccccc
Confidence            55666666665543332  00011100000 000112222222222 133455667788888888888776433222211


Q ss_pred             ------CCCCCEEEccCCcccccCCccccCCCCCCeEeccCcccccccChhhhcCCCCCCE
Q 046398          350 ------LSSLTRLDLSRNMLNGSIPLSLGKISHLEYLDLSNNKMNGTLSEIHFVNLTKLTW  404 (794)
Q Consensus       350 ------l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~  404 (794)
                            ++++..+.+.++... ..+.+..-.++|+.|.+..+.....+.. ....+..++.
T Consensus       740 ~~~~~~f~~l~~~~~~~~~~~-r~l~~~~f~~~L~~l~l~~~~~~e~~i~-~~k~~~~l~~  798 (889)
T KOG4658|consen  740 LIVLLCFPNLSKVSILNCHML-RDLTWLLFAPHLTSLSLVSCRLLEDIIP-KLKALLELKE  798 (889)
T ss_pred             cchhhhHHHHHHHHhhccccc-cccchhhccCcccEEEEecccccccCCC-HHHHhhhccc
Confidence                  122333333333222 1222333457788888877766544333 2333344443

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.80  E-value=3.4e-09  Score=81.31  Aligned_cols=60  Identities=42%  Similarity=0.554  Sum_probs=38.1

Q ss_pred             CCCEEecccccccccCCccccccCCCCEEeCCCCcCcccCcccccCCCCCCEEeCcCCcc
Q 046398          631 GLQSLNLSHNIFTGQIPENIGNLISIESLDFSTNQLSSKISQSMSSLSFLNHLNVSNNLL  690 (794)
Q Consensus       631 ~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l  690 (794)
                      +|++|++++|+++...++.|.++++|++|++++|+++...|..|..+++|++|++++|+|
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            456666666666644445666666666666666666666666666666666666666654

...

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.78  E-value=6.6e-10  Score=121.79  Aligned_cols=85  Identities=25%  Similarity=0.269  Sum_probs=54.6

Q ss_pred             eeEEEcCCCccccccChhhhcccCCCEEecccccccccCCccccccCCCCEEeCCCCcCccc---Cccc-ccCCCCCCEE
Q 046398          608 VRIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQIPENIGNLISIESLDFSTNQLSSK---ISQS-MSSLSFLNHL  683 (794)
Q Consensus       608 L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~---~p~~-l~~l~~L~~L  683 (794)
                      |+.+++++|.+. .++..+..+..+..|++++|++...  ..+.....+..+..+.|.+...   .... ....+.+..+
T Consensus       234 L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (414)
T KOG0531|consen  234 LRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTL  310 (414)
T ss_pred             HHHHhcccCccc-cccccccccccccccchhhcccccc--ccccccchHHHhccCcchhcchhhhhcccccccccccccc
Confidence            356677777766 3335566677777888888877643  3355566677777777776531   1121 4556777888


Q ss_pred             eCcCCcccccCC
Q 046398          684 NVSNNLLTGKIP  695 (794)
Q Consensus       684 ~ls~N~l~g~iP  695 (794)
                      .+.+|+.....+
T Consensus       311 ~~~~~~~~~~~~  322 (414)
T KOG0531|consen  311 TLELNPIRKISS  322 (414)
T ss_pred             ccccCccccccc
Confidence            888887776655

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.74  E-value=8.5e-09  Score=79.08  Aligned_cols=61  Identities=31%  Similarity=0.461  Sum_probs=56.3

Q ss_pred             cceeEEEcCCCccccccChhhhcccCCCEEecccccccccCCccccccCCCCEEeCCCCcC
Q 046398          606 NLVRIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQIPENIGNLISIESLDFSTNQL  666 (794)
Q Consensus       606 ~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l  666 (794)
                      ++|++|++++|+++...+..|..+++|++|++++|+++...|..|.++++|+.|++++|+|
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            4679999999999977678899999999999999999988888999999999999999986

...

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.57  E-value=9.5e-09  Score=112.71  Aligned_cols=106  Identities=33%  Similarity=0.453  Sum_probs=56.0

Q ss_pred             CCCCCCEEeCCCCCCCCCCCCcccCCCCCCCEEEcCCCCCCCCCcccccCCccccccccCccccccccccccccccCCCC
Q 046398          115 DLKHLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRCLDLSWSEYALQVHSFSWLSGQIPN  194 (794)
Q Consensus       115 ~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~~~~lp~  194 (794)
                      .+..++.+++..|.+..  +-..+..+++|.+|++.+|+|... ...+..+++|++|++++|.+.           . -.
T Consensus        70 ~l~~l~~l~l~~n~i~~--~~~~l~~~~~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls~N~I~-----------~-i~  134 (414)
T KOG0531|consen   70 SLTSLKELNLRQNLIAK--ILNHLSKLKSLEALDLYDNKIEKI-ENLLSSLVNLQVLDLSFNKIT-----------K-LE  134 (414)
T ss_pred             HhHhHHhhccchhhhhh--hhcccccccceeeeeccccchhhc-ccchhhhhcchheeccccccc-----------c-cc
Confidence            45566666666666663  234456666777777777766632 222555666666666655543           1 12


Q ss_pred             ccCCCCCCCEEECcCCCCCCCCCccccCCCCCCeEeeeccCCC
Q 046398          195 RLGNLTSLRHLDLSANKFNSTTAGWLSKFNHLEFLSLSSNGLQ  237 (794)
Q Consensus       195 ~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~  237 (794)
                      .+..++.|+.|++++|.++....  +..++.|+.+++++|.+.
T Consensus       135 ~l~~l~~L~~L~l~~N~i~~~~~--~~~l~~L~~l~l~~n~i~  175 (414)
T KOG0531|consen  135 GLSTLTLLKELNLSGNLISDISG--LESLKSLKLLDLSYNRIV  175 (414)
T ss_pred             chhhccchhhheeccCcchhccC--CccchhhhcccCCcchhh
Confidence            23344445555555555543322  333445555555555444

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.38  E-value=2.2e-09  Score=104.07  Aligned_cols=159  Identities=22%  Similarity=0.217  Sum_probs=88.1

Q ss_pred             CCCEEeCCCCCCCCCCCCcccCCCCCCCEEEcCCCCCCCCCcccccCCccccccccCccccccccccccccccCCCCccC
Q 046398          118 HLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRCLDLSWSEYALQVHSFSWLSGQIPNRLG  197 (794)
Q Consensus       118 ~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~~~~lp~~l~  197 (794)
                      +|++||||+..++...+-..+..+.+|+.|.|.++++.+.+...+.+-.+|+.|+++.+.-.        -+..+.--+.
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~--------t~n~~~ll~~  257 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGF--------TENALQLLLS  257 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeecccccccc--------chhHHHHHHH
Confidence            47777777777664434444566777777777777777777777777777777777655421        0001112345


Q ss_pred             CCCCCCEEECcCCCCCCCCCcc-ccC-CCCCCeEeeeccCCC---CCCCccccCCCCCCcEEEccCCCCCCCCCchhhhc
Q 046398          198 NLTSLRHLDLSANKFNSTTAGW-LSK-FNHLEFLSLSSNGLQ---GTISSIGLENLTSIKTIDLSLNFELGGPIPTSFVR  272 (794)
Q Consensus       198 ~l~~L~~L~Ls~n~l~~~~~~~-l~~-l~~L~~L~L~~n~l~---~~i~~~~l~~l~~L~~L~L~~~~~~~~~~~~~l~~  272 (794)
                      +++.|..|+++.|.+....... +.. -++|+.|+++++.-.   ..+.. -...+++|.+|||+.+..++......|.+
T Consensus       258 scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~t-L~~rcp~l~~LDLSD~v~l~~~~~~~~~k  336 (419)
T KOG2120|consen  258 SCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLST-LVRRCPNLVHLDLSDSVMLKNDCFQEFFK  336 (419)
T ss_pred             hhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHH-HHHhCCceeeeccccccccCchHHHHHHh
Confidence            6677777777776554332211 111 145666666654311   01111 22355666666666555555544455555


Q ss_pred             cCCCCEEEccCCC
Q 046398          273 LCELTSIDVSDVK  285 (794)
Q Consensus       273 l~~L~~L~l~~~~  285 (794)
                      ++.|++|.++.|.
T Consensus       337 f~~L~~lSlsRCY  349 (419)
T KOG2120|consen  337 FNYLQHLSLSRCY  349 (419)
T ss_pred             cchheeeehhhhc
Confidence            5555555555543

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.35  E-value=1.2e-08  Score=110.18  Aligned_cols=80  Identities=35%  Similarity=0.361  Sum_probs=40.6

Q ss_pred             eeEEEcCCCccccccChh-hhcccCCCEEecccccccccCCccccccCCCCEEeCCCCcCcccCc-ccccCCCCCCEEeC
Q 046398          608 VRIIDVSKNNFSGEIPME-LTYLRGLQSLNLSHNIFTGQIPENIGNLISIESLDFSTNQLSSKIS-QSMSSLSFLNHLNV  685 (794)
Q Consensus       608 L~~LdLs~N~l~~~ip~~-l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~L~l  685 (794)
                      |+.|||++|.+. .+|.. ...+ .|+.|+|++|.++..  ..+.+|.+|+-||+++|-|++.-. .-+..|.+|+.|+|
T Consensus       211 LkhLDlsyN~L~-~vp~l~~~gc-~L~~L~lrnN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~L  286 (1096)
T KOG1859|consen  211 LKHLDLSYNCLR-HVPQLSMVGC-KLQLLNLRNNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWL  286 (1096)
T ss_pred             ccccccccchhc-cccccchhhh-hheeeeecccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhh
Confidence            355555555554 23321 1122 266666666666532  335566666666666666654211 11334555666666


Q ss_pred             cCCccc
Q 046398          686 SNNLLT  691 (794)
Q Consensus       686 s~N~l~  691 (794)
                      .+|++.
T Consensus       287 eGNPl~  292 (1096)
T KOG1859|consen  287 EGNPLC  292 (1096)
T ss_pred             cCCccc
Confidence            666654

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.29  E-value=1.6e-08  Score=98.21  Aligned_cols=181  Identities=24%  Similarity=0.263  Sum_probs=113.9

Q ss_pred             CCCCEEECcCCCCCCCC-CccccCCCCCCeEeeeccCCCCCCCccccCCCCCCcEEEccCCCCCCCCCch-hhhccCCCC
Q 046398          200 TSLRHLDLSANKFNSTT-AGWLSKFNHLEFLSLSSNGLQGTISSIGLENLTSIKTIDLSLNFELGGPIPT-SFVRLCELT  277 (794)
Q Consensus       200 ~~L~~L~Ls~n~l~~~~-~~~l~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~~~~~~~~~~~-~l~~l~~L~  277 (794)
                      +.|++||||...++... ...+..+.+|+.|.+.++++.+.|.. .+++-.+|+.|+++..+.++..-.. -+.+++.|.
T Consensus       185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~-~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~  263 (419)
T KOG2120|consen  185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVN-TIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLD  263 (419)
T ss_pred             hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHH-HHhccccceeeccccccccchhHHHHHHHhhhhHh
Confidence            34777777776665322 23356677888888888888777666 6777788888888766555543222 356788888


Q ss_pred             EEEccCCCCCcchHHHHHhhhhcCcCCccEEEeeccccc---ccccccccCCCCCCEEEccCCcC-cCCCCCCcCCCCCC
Q 046398          278 SIDVSDVKLSQDLSQVLDILSACGASALESLVFSSSQIS---GHLTSQLGQFKSLRTLSLDDNCI-SGPLPPALGDLSSL  353 (794)
Q Consensus       278 ~L~l~~~~l~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~---~~~~~~l~~l~~L~~L~L~~n~l-~~~~p~~l~~l~~L  353 (794)
                      .|+++.|.+..+.-..+-   .+-.++|+.|+++++.-.   ..+..-...+++|.+|||++|.. +......|.+++.|
T Consensus       264 ~LNlsWc~l~~~~Vtv~V---~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L  340 (419)
T KOG2120|consen  264 ELNLSWCFLFTEKVTVAV---AHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYL  340 (419)
T ss_pred             hcCchHhhccchhhhHHH---hhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchh
Confidence            888888877654422211   112237778888776311   11122234578888888887643 33233345677888


Q ss_pred             CEEEccCCcccccCCc---cccCCCCCCeEeccCcc
Q 046398          354 TRLDLSRNMLNGSIPL---SLGKISHLEYLDLSNNK  386 (794)
Q Consensus       354 ~~L~Ls~n~l~~~~p~---~l~~l~~L~~L~Ls~N~  386 (794)
                      ++|.++.|..  .+|.   .+...|+|.+|++.++-
T Consensus       341 ~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g~v  374 (419)
T KOG2120|consen  341 QHLSLSRCYD--IIPETLLELNSKPSLVYLDVFGCV  374 (419)
T ss_pred             eeeehhhhcC--CChHHeeeeccCcceEEEEecccc
Confidence            8888888764  3443   34566788888877654

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.26  E-value=4.6e-08  Score=84.13  Aligned_cols=57  Identities=32%  Similarity=0.503  Sum_probs=27.9

Q ss_pred             eEEEcCCCccccccChhhhcccCCCEEecccccccccCCccccccCCCCEEeCCCCcCc
Q 046398          609 RIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQIPENIGNLISIESLDFSTNQLS  667 (794)
Q Consensus       609 ~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~  667 (794)
                      +.+++++|+++ .+|.++..++.|+.||++.|.+. ..|.-+..|.++-.||.-+|.+.
T Consensus        80 t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~  136 (177)
T KOG4579|consen   80 TTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA  136 (177)
T ss_pred             hhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCccc
Confidence            44444555554 44444555555555555555554 34444444555555555544443

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.18  E-value=3.2e-08  Score=107.02  Aligned_cols=161  Identities=25%  Similarity=0.349  Sum_probs=87.9

Q ss_pred             cccccCCCCCCEEeCCCCCCCCCC----CC--------------------cccCC------CCCCCEEEcCCCCCCCCCc
Q 046398          110 NPSLVDLKHLTHLDLSGNDFQGIR----IP--------------------KYLGS------LKNLRYLNLSGAEFAGIIP  159 (794)
Q Consensus       110 ~~~l~~l~~L~~L~Ls~n~l~~~~----~p--------------------~~~~~------l~~L~~L~Ls~n~l~~~~p  159 (794)
                      |-++..+..||+|.|.++.+....    +-                    ...+.      ...|...+.++|.+. ...
T Consensus       102 pi~ifpF~sLr~LElrg~~L~~~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~-~mD  180 (1096)
T KOG1859|consen  102 PISIFPFRSLRVLELRGCDLSTAKGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYNRLV-LMD  180 (1096)
T ss_pred             CceeccccceeeEEecCcchhhhhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccchhhhhHhhhhcchhhHH-hHH
Confidence            556888999999999998775320    00                    00000      012455556666655 344


Q ss_pred             ccccCCccccccccCccccccccccccccccCCCCccCCCCCCCEEECcCCCCCCCCCccccCCCCCCeEeeeccCCCCC
Q 046398          160 HQLGNLSNLRCLDLSWSEYALQVHSFSWLSGQIPNRLGNLTSLRHLDLSANKFNSTTAGWLSKFNHLEFLSLSSNGLQGT  239 (794)
Q Consensus       160 ~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~  239 (794)
                      .++.-++.|++|||++|++.           . .+.+..|++|++|||++|.+....--....+. |+.|.+++|.++. 
T Consensus       181 ~SLqll~ale~LnLshNk~~-----------~-v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~t-  246 (1096)
T KOG1859|consen  181 ESLQLLPALESLNLSHNKFT-----------K-VDNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALTT-  246 (1096)
T ss_pred             HHHHHHHHhhhhccchhhhh-----------h-hHHHHhcccccccccccchhccccccchhhhh-heeeeecccHHHh-
Confidence            55556666677777666653           1 22455666677777777766555443333333 6666666666552 


Q ss_pred             CCccccCCCCCCcEEEccCCCCCCCCCchhhhccCCCCEEEccCCCCC
Q 046398          240 ISSIGLENLTSIKTIDLSLNFELGGPIPTSFVRLCELTSIDVSDVKLS  287 (794)
Q Consensus       240 i~~~~l~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~  287 (794)
                      +.  ++.++.+|+.||+++|......-...+..+..|+.|.|.+|.+.
T Consensus       247 L~--gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~  292 (1096)
T KOG1859|consen  247 LR--GIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC  292 (1096)
T ss_pred             hh--hHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence            11  45566666666666332222222223444455555666665554

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.15  E-value=1.4e-07  Score=81.16  Aligned_cols=87  Identities=24%  Similarity=0.406  Sum_probs=70.7

Q ss_pred             ceeEEEcCCCccccccChhhh-cccCCCEEecccccccccCCccccccCCCCEEeCCCCcCcccCcccccCCCCCCEEeC
Q 046398          607 LVRIIDVSKNNFSGEIPMELT-YLRGLQSLNLSHNIFTGQIPENIGNLISIESLDFSTNQLSSKISQSMSSLSFLNHLNV  685 (794)
Q Consensus       607 ~L~~LdLs~N~l~~~ip~~l~-~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l  685 (794)
                      .|+.++|++|.+. ..|+.|. ..+.++.|+|++|.|+ .+|+++..++.|+.|+++.|.+.. .|..+..|.+|..|+.
T Consensus        54 el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~~-~p~vi~~L~~l~~Lds  130 (177)
T KOG4579|consen   54 ELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLNA-EPRVIAPLIKLDMLDS  130 (177)
T ss_pred             eEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCcccc-chHHHHHHHhHHHhcC
Confidence            3477899999998 4555554 4468999999999999 889999999999999999999985 5666777889999998


Q ss_pred             cCCcccccCCCC
Q 046398          686 SNNLLTGKIPSS  697 (794)
Q Consensus       686 s~N~l~g~iP~~  697 (794)
                      -+|... +||..
T Consensus       131 ~~na~~-eid~d  141 (177)
T KOG4579|consen  131 PENARA-EIDVD  141 (177)
T ss_pred             CCCccc-cCcHH
Confidence            888764 66654

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.05  E-value=5.2e-07  Score=87.91  Aligned_cols=41  Identities=22%  Similarity=0.226  Sum_probs=20.4

Q ss_pred             CCCCCCeEeccCcccccccChhhhcCCCCCCEEECcCCcce
Q 046398          373 KISHLEYLDLSNNKMNGTLSEIHFVNLTKLTWFSASGNSLI  413 (794)
Q Consensus       373 ~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~ls~n~l~  413 (794)
                      .++.+..|+|+.|++..--....+.+++.|..|.++++++.
T Consensus       222 ~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~  262 (418)
T KOG2982|consen  222 PFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLS  262 (418)
T ss_pred             CCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCccc
Confidence            33444455555555543222334455555555555555543

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.04  E-value=1.9e-06  Score=83.00  Aligned_cols=42  Identities=36%  Similarity=0.415  Sum_probs=24.1

Q ss_pred             ccCCCCCCCEEECcCCCCCCCCCcc----ccCCCCCCeEeeeccCC
Q 046398          195 RLGNLTSLRHLDLSANKFNSTTAGW----LSKFNHLEFLSLSSNGL  236 (794)
Q Consensus       195 ~l~~l~~L~~L~Ls~n~l~~~~~~~----l~~l~~L~~L~L~~n~l  236 (794)
                      .+.+|++|+..+||.|.|....|+.    +++-+.|++|.+++|.+
T Consensus        87 aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGl  132 (388)
T COG5238          87 ALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGL  132 (388)
T ss_pred             HHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCC
Confidence            3445666666666666665554433    33445566666666554

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.04  E-value=2.4e-07  Score=88.95  Aligned_cols=244  Identities=19%  Similarity=0.205  Sum_probs=133.9

Q ss_pred             hhhccCCCCEEEccCCCCCcchHHHHHhhhhcCcCCccEEEeecccc---cccc-------cccccCCCCCCEEEccCCc
Q 046398          269 SFVRLCELTSIDVSDVKLSQDLSQVLDILSACGASALESLVFSSSQI---SGHL-------TSQLGQFKSLRTLSLDDNC  338 (794)
Q Consensus       269 ~l~~l~~L~~L~l~~~~l~~~~~~~l~~l~~~~~~~L~~L~L~~n~l---~~~~-------~~~l~~l~~L~~L~L~~n~  338 (794)
                      .+..+..++.+++++|.+......++...-. ...+|+..++++-..   ...+       ...+..||+|+..+|++|.
T Consensus        25 el~~~d~~~evdLSGNtigtEA~e~l~~~ia-~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNA  103 (388)
T COG5238          25 ELEMMDELVEVDLSGNTIGTEAMEELCNVIA-NVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNA  103 (388)
T ss_pred             HHHhhcceeEEeccCCcccHHHHHHHHHHHh-hhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccc
Confidence            3455778888899998888776666654321 123566666554321   1111       2234567788888888887


Q ss_pred             CcCCCCCCc----CCCCCCCEEEccCCccccc----CCcc---------ccCCCCCCeEeccCcccccccCh----hhhc
Q 046398          339 ISGPLPPAL----GDLSSLTRLDLSRNMLNGS----IPLS---------LGKISHLEYLDLSNNKMNGTLSE----IHFV  397 (794)
Q Consensus       339 l~~~~p~~l----~~l~~L~~L~Ls~n~l~~~----~p~~---------l~~l~~L~~L~Ls~N~l~~~~~~----~~~~  397 (794)
                      +....|..+    +.-+.|++|.+++|.+.-.    +..+         ..+-|.|++.....|++.. .+.    ..+.
T Consensus       104 fg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlen-gs~~~~a~~l~  182 (388)
T COG5238         104 FGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLEN-GSKELSAALLE  182 (388)
T ss_pred             cCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhcc-CcHHHHHHHHH
Confidence            766655433    4456777777777766411    1111         1123455555555555541 111    0111


Q ss_pred             CCCCCCEEECcCCcceeEcCCCCcCccccceEecccccCCCC-----CCcccCCCCCCCEEeccCCCCCCCcchhHHhcc
Q 046398          398 NLTKLTWFSASGNSLILQVNPNWVPPFQLKTLLLMSCHLGPQ-----FPSWLHSQKNLSVLDISNARISDTIPRWFWNSI  472 (794)
Q Consensus       398 ~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~-----~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~  472 (794)
                      .-.                        .|+++.+..|.+...     ..-.+..+.+|+.||+..|-++-.-...     
T Consensus       183 sh~------------------------~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~-----  233 (388)
T COG5238         183 SHE------------------------NLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRY-----  233 (388)
T ss_pred             hhc------------------------CceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHH-----
Confidence            112                        444555555444322     1112345677888888888776432221     


Q ss_pred             ccceeccCcccCCCCCCCEEEccCCcccccCChhhhh-----cCCCCcEEEcccccccccCCccc-------cCCCCCCE
Q 046398          473 FQLSGIIPESFKNFSNLEVLNLGDNEFVGKIPTWMGE-----GFTSLLILILRSNKFDGFLPIQL-------CRLTSLQI  540 (794)
Q Consensus       473 ~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~-----~l~~L~~L~L~~n~l~~~~p~~~-------~~l~~L~~  540 (794)
                            +...++..+.|+.|.+.+|-++..-......     ..|+|..|...+|...+.+-..+       .++|-|..
T Consensus       234 ------La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~  307 (388)
T COG5238         234 ------LADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVD  307 (388)
T ss_pred             ------HHHHhcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHH
Confidence                  2334455566788888888776444333321     24677777777777655332211       24566667


Q ss_pred             EEccCCcCc
Q 046398          541 LDVANNSLS  549 (794)
Q Consensus       541 L~Ls~N~l~  549 (794)
                      |.+.+|++.
T Consensus       308 le~ngNr~~  316 (388)
T COG5238         308 LERNGNRIK  316 (388)
T ss_pred             HHHccCcch
Confidence            777777765

>PRK15386 type III secretion protein GogB; Provisional

Probab=98.01  E-value=1.5e-05  Score=83.95  Aligned_cols=76  Identities=16%  Similarity=0.232  Sum_probs=41.8

Q ss_pred             cCCCCCCCEEeccCCCCCCCcchhHHhccccceeccCcccCCCCCCCEEEccCCcccccCChhhhhcCCCCcEEEcccc-
Q 046398          444 LHSQKNLSVLDISNARISDTIPRWFWNSIFQLSGIIPESFKNFSNLEVLNLGDNEFVGKIPTWMGEGFTSLLILILRSN-  522 (794)
Q Consensus       444 l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n-  522 (794)
                      +..+.+++.|++++|.++.                +|.   -.++|+.|.+++|.-...+|..+   .++|+.|++++| 
T Consensus        48 ~~~~~~l~~L~Is~c~L~s----------------LP~---LP~sLtsL~Lsnc~nLtsLP~~L---P~nLe~L~Ls~Cs  105 (426)
T PRK15386         48 IEEARASGRLYIKDCDIES----------------LPV---LPNELTEITIENCNNLTTLPGSI---PEGLEKLTVCHCP  105 (426)
T ss_pred             HHHhcCCCEEEeCCCCCcc----------------cCC---CCCCCcEEEccCCCCcccCCchh---hhhhhheEccCcc
Confidence            4456777777777776654                341   12357777776643323555433   246777777776 


Q ss_pred             cccccCCccccCCCCCCEEEccCCcC
Q 046398          523 KFDGFLPIQLCRLTSLQILDVANNSL  548 (794)
Q Consensus       523 ~l~~~~p~~~~~l~~L~~L~Ls~N~l  548 (794)
                      .+. .+|      ++|+.|+++++..
T Consensus       106 ~L~-sLP------~sLe~L~L~~n~~  124 (426)
T PRK15386        106 EIS-GLP------ESVRSLEIKGSAT  124 (426)
T ss_pred             ccc-ccc------cccceEEeCCCCC
Confidence            333 333      2456666655443

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.93  E-value=8.6e-07  Score=86.40  Aligned_cols=83  Identities=25%  Similarity=0.281  Sum_probs=44.4

Q ss_pred             CccEEEeecccccc--cccccccCCCCCCEEEccCCcCcCCCCCCcCCCCCCCEEEccCCcccc-cCCccccCCCCCCeE
Q 046398          304 ALESLVFSSSQISG--HLTSQLGQFKSLRTLSLDDNCISGPLPPALGDLSSLTRLDLSRNMLNG-SIPLSLGKISHLEYL  380 (794)
Q Consensus       304 ~L~~L~L~~n~l~~--~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~-~~p~~l~~l~~L~~L  380 (794)
                      .++++||.+|.|+.  .+...+.++|.|+.|+++.|.+...+-..-....+|++|.|.+..+.- .....+..+|.++.|
T Consensus        72 ~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtel  151 (418)
T KOG2982|consen   72 DVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTEL  151 (418)
T ss_pred             hhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhh
Confidence            67777777777764  233445566777777777776654332111234566666666555431 122233444555555


Q ss_pred             eccCcc
Q 046398          381 DLSNNK  386 (794)
Q Consensus       381 ~Ls~N~  386 (794)
                      .++.|.
T Consensus       152 HmS~N~  157 (418)
T KOG2982|consen  152 HMSDNS  157 (418)
T ss_pred             hhccch
Confidence            555553

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.92  E-value=7.4e-06  Score=57.30  Aligned_cols=36  Identities=39%  Similarity=0.683  Sum_probs=17.0

Q ss_pred             CCCEEecccccccccCCccccccCCCCEEeCCCCcCc
Q 046398          631 GLQSLNLSHNIFTGQIPENIGNLISIESLDFSTNQLS  667 (794)
Q Consensus       631 ~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~  667 (794)
                      +|++|++++|+|+ .+|..++++++|+.|++++|+++
T Consensus         2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            3455555555555 34444555555555555555544

...

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.74  E-value=2.3e-05  Score=54.86  Aligned_cols=37  Identities=43%  Similarity=0.606  Sum_probs=27.6

Q ss_pred             CCCCEEeCCCCCCCCCCCCcccCCCCCCCEEEcCCCCCC
Q 046398          117 KHLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFA  155 (794)
Q Consensus       117 ~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~  155 (794)
                      ++|++|++++|+++  .+|+.+++|++|++|++++|+++
T Consensus         1 ~~L~~L~l~~N~i~--~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    1 KNLEELDLSNNQIT--DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             TT-SEEEETSSS-S--SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             CcceEEEccCCCCc--ccCchHhCCCCCCEEEecCCCCC
Confidence            46788888888888  46777788888888888888777

...

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.55  E-value=3e-05  Score=88.97  Aligned_cols=64  Identities=19%  Similarity=0.281  Sum_probs=27.6

Q ss_pred             hhhccCCCCEEEccCCCCCcchHHHHHhhh--hcCcCCccEEEeecccccccccccc-cCCCCCCEEE
Q 046398          269 SFVRLCELTSIDVSDVKLSQDLSQVLDILS--ACGASALESLVFSSSQISGHLTSQL-GQFKSLRTLS  333 (794)
Q Consensus       269 ~l~~l~~L~~L~l~~~~l~~~~~~~l~~l~--~~~~~~L~~L~L~~n~l~~~~~~~l-~~l~~L~~L~  333 (794)
                      .+.++++|+.||+|........ ..+...-  ...+|+|+.||.+++.+....-+.+ ...++|+.+.
T Consensus       215 ~LF~L~~L~vLDIS~~~~~~~~-~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~i~  281 (699)
T KOG3665|consen  215 DLFNLKKLRVLDISRDKNNDDT-KIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQIA  281 (699)
T ss_pred             HHhcccCCCeeeccccccccch-HHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhhhh
Confidence            3445555555555554433322 1111110  1124466666666666554433322 2234444443

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.55  E-value=0.00025  Score=74.93  Aligned_cols=55  Identities=16%  Similarity=0.118  Sum_probs=30.3

Q ss_pred             CCCCCCEEEccCCcccccCChhhhhcCCCCcEEEcccccccccCCccccCCCCCCEEEccCC
Q 046398          485 NFSNLEVLNLGDNEFVGKIPTWMGEGFTSLLILILRSNKFDGFLPIQLCRLTSLQILDVANN  546 (794)
Q Consensus       485 ~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N  546 (794)
                      .+.+++.|++++|.++ .+|.    -.++|+.|.+++|.-...+|+.+  .++|++|++++|
T Consensus        50 ~~~~l~~L~Is~c~L~-sLP~----LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~C  104 (426)
T PRK15386         50 EARASGRLYIKDCDIE-SLPV----LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHC  104 (426)
T ss_pred             HhcCCCEEEeCCCCCc-ccCC----CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCc
Confidence            4456666666666665 5552    13356666666644333445433  246666666666

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.45  E-value=3.4e-05  Score=88.45  Aligned_cols=130  Identities=29%  Similarity=0.349  Sum_probs=85.4

Q ss_pred             cCCCCCCEEeCCCCCCCCCCCCcccCCCCCCCEEEcCCCCCCCCCcccccCCccccccccCccccccccccccccccCCC
Q 046398          114 VDLKHLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRCLDLSWSEYALQVHSFSWLSGQIP  193 (794)
Q Consensus       114 ~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~~~~lp  193 (794)
                      ..||+|+.|.+++-.+...++-....++++|+.||+|+++++..  .++++|++||+|.+.+=.+.         ....-
T Consensus       145 ~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e---------~~~~l  213 (699)
T KOG3665|consen  145 TMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFE---------SYQDL  213 (699)
T ss_pred             hhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCC---------chhhH
Confidence            46889999999887776544445567889999999999988754  67889999999988533321         11122


Q ss_pred             CccCCCCCCCEEECcCCCCCCCC--C----ccccCCCCCCeEeeeccCCCCCCCccccCCCCCCcEE
Q 046398          194 NRLGNLTSLRHLDLSANKFNSTT--A----GWLSKFNHLEFLSLSSNGLQGTISSIGLENLTSIKTI  254 (794)
Q Consensus       194 ~~l~~l~~L~~L~Ls~n~l~~~~--~----~~l~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L  254 (794)
                      ..+.+|++|++||+|........  .    +.-..+|+|+.||.+++.+...+-..-+..-++|+.+
T Consensus       214 ~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~i  280 (699)
T KOG3665|consen  214 IDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQI  280 (699)
T ss_pred             HHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhhh
Confidence            35678899999999887554332  1    1123477888888887776654433233333444433

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=97.24  E-value=1.8e-05  Score=81.23  Aligned_cols=109  Identities=21%  Similarity=0.192  Sum_probs=55.1

Q ss_pred             CCCCEEeCCCCCCCCC-CCCcccCCCCCCCEEEcCCCC-CCCCCcccc-cCCccccccccCccccccccccccccccCCC
Q 046398          117 KHLTHLDLSGNDFQGI-RIPKYLGSLKNLRYLNLSGAE-FAGIIPHQL-GNLSNLRCLDLSWSEYALQVHSFSWLSGQIP  193 (794)
Q Consensus       117 ~~L~~L~Ls~n~l~~~-~~p~~~~~l~~L~~L~Ls~n~-l~~~~p~~l-~~l~~L~~L~Ls~~~~~~~~~~~~~~~~~lp  193 (794)
                      ..|+.|.+.++.-.+. .+-....+++++++|++.++. +++..-..+ ..+++|++|++..|..-         +...-
T Consensus       138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~i---------T~~~L  208 (483)
T KOG4341|consen  138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSI---------TDVSL  208 (483)
T ss_pred             cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchh---------HHHHH
Confidence            4677777877753322 233344567788888887774 332222222 34677777777654321         11111


Q ss_pred             C-ccCCCCCCCEEECcCC-CCCCCCC-ccccCCCCCCeEeeecc
Q 046398          194 N-RLGNLTSLRHLDLSAN-KFNSTTA-GWLSKFNHLEFLSLSSN  234 (794)
Q Consensus       194 ~-~l~~l~~L~~L~Ls~n-~l~~~~~-~~l~~l~~L~~L~L~~n  234 (794)
                      + -...+++|++|+++.+ ++++... ....++..++.+.+.+|
T Consensus       209 k~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC  252 (483)
T KOG4341|consen  209 KYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGC  252 (483)
T ss_pred             HHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhccc
Confidence            1 1234667777777766 3333211 12334444555544443

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.21  E-value=0.0005  Score=64.03  Aligned_cols=84  Identities=23%  Similarity=0.218  Sum_probs=51.7

Q ss_pred             CCCEEEccCCcCcCCCCCCcCCCCCCCEEEccCCcccccCCccccCCCCCCeEeccCcccccccChhhhcCCCCCCEEEC
Q 046398          328 SLRTLSLDDNCISGPLPPALGDLSSLTRLDLSRNMLNGSIPLSLGKISHLEYLDLSNNKMNGTLSEIHFVNLTKLTWFSA  407 (794)
Q Consensus       328 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~l  407 (794)
                      +...+||++|.+...  ..|..++.|.+|.+.+|+|+..-|.--.-+++|+.|.+.+|++...-.-..+..+++|++|.+
T Consensus        43 ~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltl  120 (233)
T KOG1644|consen   43 QFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTL  120 (233)
T ss_pred             ccceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeee
Confidence            455677777766522  335566777777777777775555433445667777777777763333334566667777776


Q ss_pred             cCCcce
Q 046398          408 SGNSLI  413 (794)
Q Consensus       408 s~n~l~  413 (794)
                      -+|+.+
T Consensus       121 l~Npv~  126 (233)
T KOG1644|consen  121 LGNPVE  126 (233)
T ss_pred             cCCchh
Confidence            666654

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.12  E-value=0.00067  Score=63.16  Aligned_cols=60  Identities=27%  Similarity=0.332  Sum_probs=38.5

Q ss_pred             CCCCEEeCCCCCCCCCCCCcccCCCCCCCEEEcCCCCCCCCCcccccCCccccccccCccccc
Q 046398          117 KHLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRCLDLSWSEYA  179 (794)
Q Consensus       117 ~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~~~~~  179 (794)
                      .....+||++|.+...   ..|..++.|..|.|++|+|+.+-|.--..+++|+.|.|.+|.+.
T Consensus        42 d~~d~iDLtdNdl~~l---~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~  101 (233)
T KOG1644|consen   42 DQFDAIDLTDNDLRKL---DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQ  101 (233)
T ss_pred             cccceecccccchhhc---ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchh
Confidence            3456677777777632   34566777777888877777655554445566666666655543

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=97.05  E-value=1.9e-05  Score=81.06  Aligned_cols=162  Identities=16%  Similarity=0.161  Sum_probs=86.9

Q ss_pred             ccCCCCCCEEeCCCCC-CCCCCCCcccCCCCCCCEEEcCCC-CCCCCCcc-cccCCccccccccCccccccccccccccc
Q 046398          113 LVDLKHLTHLDLSGND-FQGIRIPKYLGSLKNLRYLNLSGA-EFAGIIPH-QLGNLSNLRCLDLSWSEYALQVHSFSWLS  189 (794)
Q Consensus       113 l~~l~~L~~L~Ls~n~-l~~~~~p~~~~~l~~L~~L~Ls~n-~l~~~~p~-~l~~l~~L~~L~Ls~~~~~~~~~~~~~~~  189 (794)
                      -.+++++++|++.++. +++...-..-..+++|++|+|..| .++...-. -...+++|++|++|+|.-.         +
T Consensus       160 ~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi---------~  230 (483)
T KOG4341|consen  160 ASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQI---------S  230 (483)
T ss_pred             hhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchh---------h
Confidence            3678899999998885 443322222356889999999985 45543333 2346899999999988632         2


Q ss_pred             c-CCCCccCCCCCCCEEECcCCCCCCCCCccc----cCCCCCCeEeeeccC-CCCCCCccccCCCCCCcEEEccCCCCCC
Q 046398          190 G-QIPNRLGNLTSLRHLDLSANKFNSTTAGWL----SKFNHLEFLSLSSNG-LQGTISSIGLENLTSIKTIDLSLNFELG  263 (794)
Q Consensus       190 ~-~lp~~l~~l~~L~~L~Ls~n~l~~~~~~~l----~~l~~L~~L~L~~n~-l~~~i~~~~l~~l~~L~~L~L~~~~~~~  263 (794)
                      + .+-.-..++..++.+-+.+|.  +...+.+    +.+..+.++++..+. +++.--...-..+..|+.++.+....++
T Consensus       231 ~~gv~~~~rG~~~l~~~~~kGC~--e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~  308 (483)
T KOG4341|consen  231 GNGVQALQRGCKELEKLSLKGCL--ELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDIT  308 (483)
T ss_pred             cCcchHHhccchhhhhhhhcccc--cccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCc
Confidence            2 122233445556666555542  1111112    233445556655553 2211100011235566677666444433


Q ss_pred             CCCchhhh-ccCCCCEEEccCCC
Q 046398          264 GPIPTSFV-RLCELTSIDVSDVK  285 (794)
Q Consensus       264 ~~~~~~l~-~l~~L~~L~l~~~~  285 (794)
                      ......++ +..+|+.+.++.++
T Consensus       309 d~~l~aLg~~~~~L~~l~l~~c~  331 (483)
T KOG4341|consen  309 DEVLWALGQHCHNLQVLELSGCQ  331 (483)
T ss_pred             hHHHHHHhcCCCceEEEeccccc
Confidence            33333332 44556666665554

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.00  E-value=0.00032  Score=68.21  Aligned_cols=68  Identities=19%  Similarity=0.224  Sum_probs=35.7

Q ss_pred             ecccccCCCCCCEEeCCCCCCCCCCCCcccCCCCCCCEEEcCCC--CCCCCCcccccCCccccccccCccccc
Q 046398          109 VNPSLVDLKHLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGA--EFAGIIPHQLGNLSNLRCLDLSWSEYA  179 (794)
Q Consensus       109 ~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n--~l~~~~p~~l~~l~~L~~L~Ls~~~~~  179 (794)
                      +....-.+..|+.|++.+..++..   ..+-.+++|++|.+|.|  ++++.++--...+++|++|++++|++.
T Consensus        35 ~~gl~d~~~~le~ls~~n~gltt~---~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~  104 (260)
T KOG2739|consen   35 LGGLTDEFVELELLSVINVGLTTL---TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK  104 (260)
T ss_pred             cccccccccchhhhhhhccceeec---ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc
Confidence            333334455555555555555432   23344666667777666  444444444444566666666655543

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=96.83  E-value=0.0045  Score=55.52  Aligned_cols=84  Identities=17%  Similarity=0.262  Sum_probs=34.2

Q ss_pred             cccCCCCCCEEEccCCcCcCCCCCCcCCCCCCCEEEccCCcccccCCccccCCCCCCeEeccCcccccccChhhhcCCCC
Q 046398          322 QLGQFKSLRTLSLDDNCISGPLPPALGDLSSLTRLDLSRNMLNGSIPLSLGKISHLEYLDLSNNKMNGTLSEIHFVNLTK  401 (794)
Q Consensus       322 ~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~  401 (794)
                      .|..+++|+.+.+.. .+.......|.++++|+.+.+..+ +.......+..+++++.+.+.+ .+. .++...|..+++
T Consensus         7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~-~i~~~~F~~~~~   82 (129)
T PF13306_consen    7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLK-SIGDNAFSNCTN   82 (129)
T ss_dssp             TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT--EE-TTTTTT-TT
T ss_pred             HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccc-cccccccccccc
Confidence            344555555555553 333333444555555666655553 3323333445555555555543 222 334444555555


Q ss_pred             CCEEECcC
Q 046398          402 LTWFSASG  409 (794)
Q Consensus       402 L~~L~ls~  409 (794)
                      |+.+.+..
T Consensus        83 l~~i~~~~   90 (129)
T PF13306_consen   83 LKNIDIPS   90 (129)
T ss_dssp             ECEEEETT
T ss_pred             ccccccCc
Confidence            55555544

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.52  E-value=0.0016  Score=63.55  Aligned_cols=94  Identities=21%  Similarity=0.263  Sum_probs=56.8

Q ss_pred             CCcccCCCCCCCEEEcCCCCCCCCCcccccCCccccccccCccccccccccccccccCCCCccCCCCCCCEEECcCCCCC
Q 046398          134 IPKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRCLDLSWSEYALQVHSFSWLSGQIPNRLGNLTSLRHLDLSANKFN  213 (794)
Q Consensus       134 ~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~~~~lp~~l~~l~~L~~L~Ls~n~l~  213 (794)
                      +......+..|+.|++.+..++..  ..+-.|++|+.|++|.|+..        .++.++....++++|++|++++|++.
T Consensus        35 ~~gl~d~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~--------~~~~l~vl~e~~P~l~~l~ls~Nki~  104 (260)
T KOG2739|consen   35 LGGLTDEFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRR--------VSGGLEVLAEKAPNLKVLNLSGNKIK  104 (260)
T ss_pred             cccccccccchhhhhhhccceeec--ccCCCcchhhhhcccCCccc--------ccccceehhhhCCceeEEeecCCccc
Confidence            444455566777777777766532  23556778888888877444        44455555556678888888888765


Q ss_pred             CC-CCccccCCCCCCeEeeeccCCC
Q 046398          214 ST-TAGWLSKFNHLEFLSLSSNGLQ  237 (794)
Q Consensus       214 ~~-~~~~l~~l~~L~~L~L~~n~l~  237 (794)
                      .. ....+..+.+|..|++.+|..+
T Consensus       105 ~lstl~pl~~l~nL~~Ldl~n~~~~  129 (260)
T KOG2739|consen  105 DLSTLRPLKELENLKSLDLFNCSVT  129 (260)
T ss_pred             cccccchhhhhcchhhhhcccCCcc
Confidence            31 1112444555666666655543

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=96.48  E-value=0.0082  Score=53.83  Aligned_cols=60  Identities=23%  Similarity=0.217  Sum_probs=23.4

Q ss_pred             ccCCCCCCCEEEccCCcccccCChhhhhcCCCCcEEEcccccccccCCccccCCCCCCEEEcc
Q 046398          482 SFKNFSNLEVLNLGDNEFVGKIPTWMGEGFTSLLILILRSNKFDGFLPIQLCRLTSLQILDVA  544 (794)
Q Consensus       482 ~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls  544 (794)
                      .|.++++|+.+.+.. .+. .++...+.++++|+.+.+.++ +.......|..+++|+.+.+.
T Consensus         7 ~F~~~~~l~~i~~~~-~~~-~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~   66 (129)
T PF13306_consen    7 AFYNCSNLESITFPN-TIK-KIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFP   66 (129)
T ss_dssp             TTTT-TT--EEEETS-T---EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEET
T ss_pred             HHhCCCCCCEEEECC-Cee-EeChhhccccccccccccccc-ccccceeeeeccccccccccc
Confidence            455555666666553 333 444444444445555555443 333333344444445555543

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.34  E-value=0.00024  Score=69.13  Aligned_cols=89  Identities=26%  Similarity=0.254  Sum_probs=62.6

Q ss_pred             CCCCCCEEeCCCCCCCCCCCCcccCCCCCCCEEEcCCCCCCCCCcccccCCccccccccCccccccccccccccccCCCC
Q 046398          115 DLKHLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRCLDLSWSEYALQVHSFSWLSGQIPN  194 (794)
Q Consensus       115 ~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~~~~lp~  194 (794)
                      .+.+.+.|+..++.++++.   ...+++.|++|.||-|+|+..-|  +..|++|++|.|..|.+....         --.
T Consensus        17 dl~~vkKLNcwg~~L~DIs---ic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sld---------EL~   82 (388)
T KOG2123|consen   17 DLENVKKLNCWGCGLDDIS---ICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLD---------ELE   82 (388)
T ss_pred             HHHHhhhhcccCCCccHHH---HHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHH---------HHH
Confidence            4667888999999998653   34568899999999999985533  788899999999877654100         012


Q ss_pred             ccCCCCCCCEEECcCCCCCCCCC
Q 046398          195 RLGNLTSLRHLDLSANKFNSTTA  217 (794)
Q Consensus       195 ~l~~l~~L~~L~Ls~n~l~~~~~  217 (794)
                      .+.++++|+.|.|..|.-.+..+
T Consensus        83 YLknlpsLr~LWL~ENPCc~~ag  105 (388)
T KOG2123|consen   83 YLKNLPSLRTLWLDENPCCGEAG  105 (388)
T ss_pred             HHhcCchhhhHhhccCCcccccc
Confidence            34566777777777766555443

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.84  E-value=0.00046  Score=67.22  Aligned_cols=80  Identities=28%  Similarity=0.278  Sum_probs=39.8

Q ss_pred             CCCCCCEEECcCCCCCCCCCccccCCCCCCeEeeeccCCCCCCCccccCCCCCCcEEEccCCCCCCCCCch-----hhhc
Q 046398          198 NLTSLRHLDLSANKFNSTTAGWLSKFNHLEFLSLSSNGLQGTISSIGLENLTSIKTIDLSLNFELGGPIPT-----SFVR  272 (794)
Q Consensus       198 ~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~~~~~~~~~~~-----~l~~  272 (794)
                      +++.|++|.||-|+|+...|  +..+++|++|+|..|.|...-....+.++++|+.|.|. .|.-.|.-+.     .+.-
T Consensus        39 kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~-ENPCc~~ag~nYR~~VLR~  115 (388)
T KOG2123|consen   39 KMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLD-ENPCCGEAGQNYRRKVLRV  115 (388)
T ss_pred             hcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhc-cCCcccccchhHHHHHHHH
Confidence            34455555555555554444  55556666666666655432222234555666666665 3333333222     2445


Q ss_pred             cCCCCEEE
Q 046398          273 LCELTSID  280 (794)
Q Consensus       273 l~~L~~L~  280 (794)
                      +++|+.||
T Consensus       116 LPnLkKLD  123 (388)
T KOG2123|consen  116 LPNLKKLD  123 (388)
T ss_pred             cccchhcc
Confidence            56666554

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=95.70  E-value=0.0011  Score=74.88  Aligned_cols=15  Identities=27%  Similarity=0.131  Sum_probs=7.2

Q ss_pred             cCCCCCCEEEccCCc
Q 046398          324 GQFKSLRTLSLDDNC  338 (794)
Q Consensus       324 ~~l~~L~~L~L~~n~  338 (794)
                      ..+++++.+.+..+.
T Consensus       359 ~~~~~l~~~~l~~~~  373 (482)
T KOG1947|consen  359 RSCPKLTDLSLSYCG  373 (482)
T ss_pred             hcCCCcchhhhhhhh
Confidence            344455555554444

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.55  E-value=0.0046  Score=35.86  Aligned_cols=11  Identities=45%  Similarity=0.495  Sum_probs=4.6

Q ss_pred             CEEeccccccc
Q 046398          633 QSLNLSHNIFT  643 (794)
Q Consensus       633 ~~L~Ls~N~l~  643 (794)
                      ++|||++|+++
T Consensus         3 ~~Ldls~n~l~   13 (22)
T PF00560_consen    3 EYLDLSGNNLT   13 (22)
T ss_dssp             SEEEETSSEES
T ss_pred             cEEECCCCcCE
Confidence            34444444444

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.34  E-value=0.0065  Score=35.24  Aligned_cols=21  Identities=43%  Similarity=0.616  Sum_probs=13.1

Q ss_pred             CCCEEeCCCCcCcccCcccccC
Q 046398          655 SIESLDFSTNQLSSKISQSMSS  676 (794)
Q Consensus       655 ~L~~L~Ls~N~l~~~~p~~l~~  676 (794)
                      +|+.|||++|+++ .+|..|++
T Consensus         1 ~L~~Ldls~n~l~-~ip~~~~~   21 (22)
T PF00560_consen    1 NLEYLDLSGNNLT-SIPSSFSN   21 (22)
T ss_dssp             TESEEEETSSEES-EEGTTTTT
T ss_pred             CccEEECCCCcCE-eCChhhcC
Confidence            3667777777776 56655543

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=94.11  E-value=0.0096  Score=67.16  Aligned_cols=15  Identities=27%  Similarity=0.147  Sum_probs=8.3

Q ss_pred             cCCCCCCeEeccCcc
Q 046398          372 GKISHLEYLDLSNNK  386 (794)
Q Consensus       372 ~~l~~L~~L~Ls~N~  386 (794)
                      ..+++++.+.+..+.
T Consensus       359 ~~~~~l~~~~l~~~~  373 (482)
T KOG1947|consen  359 RSCPKLTDLSLSYCG  373 (482)
T ss_pred             hcCCCcchhhhhhhh
Confidence            445555555555555

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=93.38  E-value=0.0031  Score=60.03  Aligned_cols=90  Identities=19%  Similarity=0.220  Sum_probs=74.7

Q ss_pred             ccccCCCCCCEEeCCCCCCCCCCCCcccCCCCCCCEEEcCCCCCCCCCcccccCCccccccccCcccccccccccccccc
Q 046398          111 PSLVDLKHLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRCLDLSWSEYALQVHSFSWLSG  190 (794)
Q Consensus       111 ~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~~~  190 (794)
                      ..+..+...++||++.|++.  .+-..|..++.|..||++.|.+. ..|..++.+..++++++..|...           
T Consensus        36 ~ei~~~kr~tvld~~s~r~v--n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-----------  101 (326)
T KOG0473|consen   36 REIASFKRVTVLDLSSNRLV--NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-----------  101 (326)
T ss_pred             hhhhccceeeeehhhhhHHH--hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-----------
Confidence            45678889999999999887  45677788889999999999887 78999999999999999877654           


Q ss_pred             CCCCccCCCCCCCEEECcCCCCCC
Q 046398          191 QIPNRLGNLTSLRHLDLSANKFNS  214 (794)
Q Consensus       191 ~lp~~l~~l~~L~~L~Ls~n~l~~  214 (794)
                      ..|.+++..+.++++++..|.+.-
T Consensus       102 ~~p~s~~k~~~~k~~e~k~~~~~~  125 (326)
T KOG0473|consen  102 QQPKSQKKEPHPKKNEQKKTEFFR  125 (326)
T ss_pred             hCCccccccCCcchhhhccCcchH
Confidence            678888888999988888887543

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=93.32  E-value=0.00076  Score=74.20  Aligned_cols=60  Identities=28%  Similarity=0.342  Sum_probs=30.0

Q ss_pred             eEEEcCCCccccc----cChhhhcc-cCCCEEecccccccccCC----ccccccCCCCEEeCCCCcCcc
Q 046398          609 RIIDVSKNNFSGE----IPMELTYL-RGLQSLNLSHNIFTGQIP----ENIGNLISIESLDFSTNQLSS  668 (794)
Q Consensus       609 ~~LdLs~N~l~~~----ip~~l~~l-~~L~~L~Ls~N~l~~~ip----~~l~~l~~L~~L~Ls~N~l~~  668 (794)
                      ..+++++|++.+.    ..+.+..+ ..++.++++.|.|+..-.    +.+.....++.|.++.|.+..
T Consensus       236 ~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~  304 (478)
T KOG4308|consen  236 RELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD  304 (478)
T ss_pred             HHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence            3466666666532    12223333 445666666666654322    223344556666666666554

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=91.75  E-value=0.1  Score=28.03  Aligned_cols=11  Identities=45%  Similarity=0.727  Sum_probs=3.5

Q ss_pred             CCEEecccccc
Q 046398          632 LQSLNLSHNIF  642 (794)
Q Consensus       632 L~~L~Ls~N~l  642 (794)
                      |+.|+|++|++
T Consensus         3 L~~L~l~~n~L   13 (17)
T PF13504_consen    3 LRTLDLSNNRL   13 (17)
T ss_dssp             -SEEEETSS--
T ss_pred             cCEEECCCCCC
Confidence            44444444443

...

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=91.46  E-value=0.011  Score=56.27  Aligned_cols=83  Identities=17%  Similarity=0.188  Sum_probs=70.7

Q ss_pred             cceeEEEcCCCccccccChhhhcccCCCEEecccccccccCCccccccCCCCEEeCCCCcCcccCcccccCCCCCCEEeC
Q 046398          606 NLVRIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQIPENIGNLISIESLDFSTNQLSSKISQSMSSLSFLNHLNV  685 (794)
Q Consensus       606 ~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l  685 (794)
                      ...+.||++.|++- ..-..++-++.|..||++.|++. ..|..++++..+..+++..|..+ ..|.++..++.++++++
T Consensus        42 kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~  118 (326)
T KOG0473|consen   42 KRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQ  118 (326)
T ss_pred             ceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhh
Confidence            44588999999886 45566777888999999999998 78899999999999999888887 57888999999999999


Q ss_pred             cCCccc
Q 046398          686 SNNLLT  691 (794)
Q Consensus       686 s~N~l~  691 (794)
                      .+|++.
T Consensus       119 k~~~~~  124 (326)
T KOG0473|consen  119 KKTEFF  124 (326)
T ss_pred             ccCcch
Confidence            999875

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=91.28  E-value=0.0018  Score=71.21  Aligned_cols=90  Identities=26%  Similarity=0.276  Sum_probs=45.7

Q ss_pred             CCCCEEeCCCCCCCCCC---CCcccCCCCCCCEEEcCCCCCCCCCcc----cccCC-ccccccccCcccccccccccccc
Q 046398          117 KHLTHLDLSGNDFQGIR---IPKYLGSLKNLRYLNLSGAEFAGIIPH----QLGNL-SNLRCLDLSWSEYALQVHSFSWL  188 (794)
Q Consensus       117 ~~L~~L~Ls~n~l~~~~---~p~~~~~l~~L~~L~Ls~n~l~~~~p~----~l~~l-~~L~~L~Ls~~~~~~~~~~~~~~  188 (794)
                      ..+.+|.|.+|.+....   +-..+.....|..|++++|.+.+.--.    .+... ..|++|++..|.....      .
T Consensus        87 ~~l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~------g  160 (478)
T KOG4308|consen   87 ASLLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSE------G  160 (478)
T ss_pred             hhHHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhccccccc------c
Confidence            44777788888776431   123345566777777777777633211    12222 3455565555443311      1


Q ss_pred             ccCCCCccCCCCCCCEEECcCCCC
Q 046398          189 SGQIPNRLGNLTSLRHLDLSANKF  212 (794)
Q Consensus       189 ~~~lp~~l~~l~~L~~L~Ls~n~l  212 (794)
                      ...+.+.+.....++.++++.|.+
T Consensus       161 ~~~l~~~L~~~~~l~~l~l~~n~l  184 (478)
T KOG4308|consen  161 AAPLAAVLEKNEHLTELDLSLNGL  184 (478)
T ss_pred             hHHHHHHHhcccchhHHHHHhccc
Confidence            112334444455555555555544

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=90.30  E-value=0.17  Score=27.11  Aligned_cols=12  Identities=42%  Similarity=0.756  Sum_probs=4.1

Q ss_pred             CCCEEEccCCcc
Q 046398          488 NLEVLNLGDNEF  499 (794)
Q Consensus       488 ~L~~L~Ls~n~l  499 (794)
                      +|+.|++++|++
T Consensus         2 ~L~~L~l~~n~L   13 (17)
T PF13504_consen    2 NLRTLDLSNNRL   13 (17)
T ss_dssp             T-SEEEETSS--
T ss_pred             ccCEEECCCCCC
Confidence            344444444444

...

>smart00370 LRR Leucine-rich repeats, outliers

Probab=88.01  E-value=0.39  Score=28.97  Aligned_cols=15  Identities=53%  Similarity=0.667  Sum_probs=7.5

Q ss_pred             CCCCEEeCCCCcCcc
Q 046398          654 ISIESLDFSTNQLSS  668 (794)
Q Consensus       654 ~~L~~L~Ls~N~l~~  668 (794)
                      ++|+.|+|++|+|..
T Consensus         2 ~~L~~L~L~~N~l~~   16 (26)
T smart00370        2 PNLRELDLSNNQLSS   16 (26)
T ss_pred             CCCCEEECCCCcCCc
Confidence            345555555555543

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=88.01  E-value=0.39  Score=28.97  Aligned_cols=15  Identities=53%  Similarity=0.667  Sum_probs=7.5

Q ss_pred             CCCCEEeCCCCcCcc
Q 046398          654 ISIESLDFSTNQLSS  668 (794)
Q Consensus       654 ~~L~~L~Ls~N~l~~  668 (794)
                      ++|+.|+|++|+|..
T Consensus         2 ~~L~~L~L~~N~l~~   16 (26)
T smart00369        2 PNLRELDLSNNQLSS   16 (26)
T ss_pred             CCCCEEECCCCcCCc
Confidence            345555555555543

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=87.12  E-value=0.57  Score=28.24  Aligned_cols=21  Identities=29%  Similarity=0.425  Sum_probs=13.5

Q ss_pred             CCCCEEEccCCcccccCChhhh
Q 046398          487 SNLEVLNLGDNEFVGKIPTWMG  508 (794)
Q Consensus       487 ~~L~~L~Ls~n~l~~~ip~~~~  508 (794)
                      ++|+.|+|++|+++ .+|...+
T Consensus         2 ~~L~~L~L~~N~l~-~lp~~~f   22 (26)
T smart00369        2 PNLRELDLSNNQLS-SLPPGAF   22 (26)
T ss_pred             CCCCEEECCCCcCC-cCCHHHc
Confidence            45677777777776 5666544

>smart00370 LRR Leucine-rich repeats, outliers

Probab=87.12  E-value=0.57  Score=28.24  Aligned_cols=21  Identities=29%  Similarity=0.425  Sum_probs=13.5

Q ss_pred             CCCCEEEccCCcccccCChhhh
Q 046398          487 SNLEVLNLGDNEFVGKIPTWMG  508 (794)
Q Consensus       487 ~~L~~L~Ls~n~l~~~ip~~~~  508 (794)
                      ++|+.|+|++|+++ .+|...+
T Consensus         2 ~~L~~L~L~~N~l~-~lp~~~f   22 (26)
T smart00370        2 PNLRELDLSNNQLS-SLPPGAF   22 (26)
T ss_pred             CCCCEEECCCCcCC-cCCHHHc
Confidence            45677777777776 5666544

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=85.35  E-value=0.16  Score=47.90  Aligned_cols=87  Identities=16%  Similarity=0.138  Sum_probs=55.9

Q ss_pred             CCCCEEECcCCCCCCCCCccccCCCCCCeEeeeccCCCCCCCccccC-CCCCCcEEEccCCCCCCCCCchhhhccCCCCE
Q 046398          200 TSLRHLDLSANKFNSTTAGWLSKFNHLEFLSLSSNGLQGTISSIGLE-NLTSIKTIDLSLNFELGGPIPTSFVRLCELTS  278 (794)
Q Consensus       200 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~l~-~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~  278 (794)
                      ..++.+|-++..|....-+.+.+++.++.|.+.++.--+...-..++ -.++|+.|+++++..++..--..+.++++|+.
T Consensus       101 ~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~  180 (221)
T KOG3864|consen  101 VKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRR  180 (221)
T ss_pred             ceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHH
Confidence            34556666666666666666777777777777766522111100111 34678888888887887777777888888888


Q ss_pred             EEccCCCC
Q 046398          279 IDVSDVKL  286 (794)
Q Consensus       279 L~l~~~~l  286 (794)
                      |.+.+-..
T Consensus       181 L~l~~l~~  188 (221)
T KOG3864|consen  181 LHLYDLPY  188 (221)
T ss_pred             HHhcCchh
Confidence            87766443

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=84.05  E-value=0.21  Score=29.55  Aligned_cols=13  Identities=46%  Similarity=0.846  Sum_probs=4.5

Q ss_pred             CCCEEeCCCCcCc
Q 046398          655 SIESLDFSTNQLS  667 (794)
Q Consensus       655 ~L~~L~Ls~N~l~  667 (794)
                      +|++|+|++|+++
T Consensus         3 ~L~~L~l~~n~i~   15 (24)
T PF13516_consen    3 NLETLDLSNNQIT   15 (24)
T ss_dssp             T-SEEE-TSSBEH
T ss_pred             CCCEEEccCCcCC
Confidence            3444444444433

...

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=83.91  E-value=0.22  Score=29.42  Aligned_cols=16  Identities=38%  Similarity=0.574  Sum_probs=7.5

Q ss_pred             cCCCEEeccccccccc
Q 046398          630 RGLQSLNLSHNIFTGQ  645 (794)
Q Consensus       630 ~~L~~L~Ls~N~l~~~  645 (794)
                      ++|++|+|++|+|++.
T Consensus         2 ~~L~~L~l~~n~i~~~   17 (24)
T PF13516_consen    2 PNLETLDLSNNQITDE   17 (24)
T ss_dssp             TT-SEEE-TSSBEHHH
T ss_pred             CCCCEEEccCCcCCHH
Confidence            4455555555555543

...

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	794
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		3e-36
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		3e-36
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		1e-13
2z63_A	570	Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 A		5e-07
2omu_A	462	Crystal Structure Of Inla G194s+s Y369s/hec1 Comple		6e-07
2omt_A	462	Crystal Structure Of Inla G194s+sHEC1 COMPLEX Lengt		2e-06
2omv_A	461	Crystal Structure Of Inla S192n Y369s/hec1 Complex		3e-06
2omx_A	462	Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX		5e-06
3fxi_A	605	Crystal Structure Of The Human Tlr4-Human Md-2-E.Co		8e-06
2omz_A	466	Crystal Structure Of Inla Y369a/hec1 Complex Length		9e-06
2omy_A	461	Crystal Structure Of Inla S192n/hec1 Complex Length		1e-05
1o6s_A	466	Internalin (Listeria Monocytogenes) E-Cadherin (Hum		2e-05
3a79_B	562	Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex Len		3e-04
2z66_A	306	Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 A		3e-04
4g8a_A	635	Crystal Structure Of Human Tlr4 Polymorphic Variant		3e-04

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score =  150 bits (378), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 179/650 (27%), Positives = 273/650 (42%), Gaps = 108/650 (16%)
Query: 91  RYATTEYEDYMRSMLSGNVNPSLVDLKHLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLS 150
           R    E+ D   +  S  + P L D   L HLD+SGN   G    + + +   L+ LN+S
Sbjct: 198 RCVNLEFLDVSSNNFSTGI-PFLGDCSALQHLDISGNKLSG-DFSRAISTCTELKLLNIS 255
Query: 151 GAEFAGIIPHQLGNLSNLRCLDLSWSEYALQVHSFSWLSGQIPNRL-GNLTSLRHLDLSA 209
             +F G IP     L +L+ L L+ +++          +G+IP+ L G   +L  LDLS 
Sbjct: 256 SNQFVGPIPPL--PLKSLQYLSLAENKF----------TGEIPDFLSGACDTLTGLDLSG 303
Query: 210 NKFNSTTAGWLSKFNHLEFLSLSSNGLQGTISSIGLENLTSIKTIDLSLNFELGGPIPTS 269
           N F      +    + LE L+LSSN   G +    L  +  +K +DLS N E  G +P S
Sbjct: 304 NHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFN-EFSGELPES 362
Query: 270 FVRLCELTSIDVSDVKLSQDLSQVLDILSACGASALESLVFSSSQISGHLTSQLGQ--FK 327
              L                            +++L +L  SS+  SG +   L Q    
Sbjct: 363 LTNL----------------------------SASLLTLDLSSNNFSGPILPNLCQNPKN 394
Query: 328 SLRTLSLDDNCISGPLPPAXXXXXXXXXXXXXXNMLNGSIPLSLGKISHLEYLDLSNNKM 387
           +L+ L L +N  +G +PP               N L+G+IP SLG +S L  L L  N +
Sbjct: 395 TLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNML 454
Query: 388 NGTL-SEIHFVNLTKLTWFSASGNSLILQVNPNWVPPFQLKTLLLMSCHLGPQFPSWLHS 446
            G +  E+ +V                            L+TL+L    L  + PS L +
Sbjct: 455 EGEIPQELMYVK--------------------------TLETLILDFNDLTGEIPSGLSN 488
Query: 447 QKNLSVLDISNARISDTIPRWFWNSIFQLSGIIPESFKNFSNLEVLNLGDNEFVGKIPTW 506
             NL+ + +SN R               L+G IP+      NL +L L +N F G IP  
Sbjct: 489 CTNLNWISLSNNR---------------LTGEIPKWIGRLENLAILKLSNNSFSGNIPAE 533
Query: 507 MGEGFTSLLILILRSNKFDGFLPIQLCR---------LTSLQILDVANNSLSGTMPGCVN 557
           +G+   SL+ L L +N F+G +P  + +         +   + + + N+ +     G  N
Sbjct: 534 LGD-CRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGN 592
Query: 558 NFSAMATIDSSHQSNAMSYFEVTAYDCEVLEDASIVMKGSMVEYNSILNLVRIIDVSKNN 617
                     S Q N +S    T   C +    S V  G           +  +D+S N 
Sbjct: 593 LLEFQGI--RSEQLNRLS----TRNPCNI---TSRVYGGHTSPTFDNNGSMMFLDMSYNM 643
Query: 618 FSGEIPMELTYLRGLQSLNLSHNIFTGQIPENIGNLISIESLDFSTNQXXXXXXXXXXXX 677
            SG IP E+  +  L  LNL HN  +G IP+ +G+L  +  LD S+N+            
Sbjct: 644 LSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSAL 703
Query: 678 XXXNHLNVSNNLLTGKIPSSTQLQSFDASCFVGN-NLCGPPLPSCTENNA 726
                +++SNN L+G IP   Q ++F  + F+ N  LCG PLP C  +NA
Sbjct: 704 TMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPRCDPSNA 753

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score =  150 bits (378), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 179/650 (27%), Positives = 273/650 (42%), Gaps = 108/650 (16%)
Query: 91  RYATTEYEDYMRSMLSGNVNPSLVDLKHLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLS 150
           R    E+ D   +  S  + P L D   L HLD+SGN   G    + + +   L+ LN+S
Sbjct: 195 RCVNLEFLDVSSNNFSTGI-PFLGDCSALQHLDISGNKLSG-DFSRAISTCTELKLLNIS 252
Query: 151 GAEFAGIIPHQLGNLSNLRCLDLSWSEYALQVHSFSWLSGQIPNRL-GNLTSLRHLDLSA 209
             +F G IP     L +L+ L L+ +++          +G+IP+ L G   +L  LDLS 
Sbjct: 253 SNQFVGPIPPL--PLKSLQYLSLAENKF----------TGEIPDFLSGACDTLTGLDLSG 300
Query: 210 NKFNSTTAGWLSKFNHLEFLSLSSNGLQGTISSIGLENLTSIKTIDLSLNFELGGPIPTS 269
           N F      +    + LE L+LSSN   G +    L  +  +K +DLS N E  G +P S
Sbjct: 301 NHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFN-EFSGELPES 359
Query: 270 FVRLCELTSIDVSDVKLSQDLSQVLDILSACGASALESLVFSSSQISGHLTSQLGQ--FK 327
              L                            +++L +L  SS+  SG +   L Q    
Sbjct: 360 LTNL----------------------------SASLLTLDLSSNNFSGPILPNLCQNPKN 391
Query: 328 SLRTLSLDDNCISGPLPPAXXXXXXXXXXXXXXNMLNGSIPLSLGKISHLEYLDLSNNKM 387
           +L+ L L +N  +G +PP               N L+G+IP SLG +S L  L L  N +
Sbjct: 392 TLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNML 451
Query: 388 NGTL-SEIHFVNLTKLTWFSASGNSLILQVNPNWVPPFQLKTLLLMSCHLGPQFPSWLHS 446
            G +  E+ +V                            L+TL+L    L  + PS L +
Sbjct: 452 EGEIPQELMYVK--------------------------TLETLILDFNDLTGEIPSGLSN 485
Query: 447 QKNLSVLDISNARISDTIPRWFWNSIFQLSGIIPESFKNFSNLEVLNLGDNEFVGKIPTW 506
             NL+ + +SN R               L+G IP+      NL +L L +N F G IP  
Sbjct: 486 CTNLNWISLSNNR---------------LTGEIPKWIGRLENLAILKLSNNSFSGNIPAE 530
Query: 507 MGEGFTSLLILILRSNKFDGFLPIQLCR---------LTSLQILDVANNSLSGTMPGCVN 557
           +G+   SL+ L L +N F+G +P  + +         +   + + + N+ +     G  N
Sbjct: 531 LGD-CRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGN 589
Query: 558 NFSAMATIDSSHQSNAMSYFEVTAYDCEVLEDASIVMKGSMVEYNSILNLVRIIDVSKNN 617
                     S Q N +S    T   C +    S V  G           +  +D+S N 
Sbjct: 590 LLEFQGI--RSEQLNRLS----TRNPCNI---TSRVYGGHTSPTFDNNGSMMFLDMSYNM 640
Query: 618 FSGEIPMELTYLRGLQSLNLSHNIFTGQIPENIGNLISIESLDFSTNQXXXXXXXXXXXX 677
            SG IP E+  +  L  LNL HN  +G IP+ +G+L  +  LD S+N+            
Sbjct: 641 LSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSAL 700
Query: 678 XXXNHLNVSNNLLTGKIPSSTQLQSFDASCFVGN-NLCGPPLPSCTENNA 726
                +++SNN L+G IP   Q ++F  + F+ N  LCG PLP C  +NA
Sbjct: 701 TMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPRCDPSNA 750

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 75.5 bits (184), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 72/253 (28%), Positives = 115/253 (45%), Gaps = 16/253 (6%)
Query: 479 IPESFKNFSNLEVLNLGD-NEFVGKIPTWMGEGFTSLLILILRSNKFDGFLPIQLCRLTS 537
           IP S  N   L  L +G  N  VG IP  + +  T L  L +      G +P  L ++ +
Sbjct: 68  IPSSLANLPYLNFLYIGGINNLVGPIPPAIAK-LTQLHYLYITHTNVSGAIPDFLSQIKT 126
Query: 538 LQILDVANNSLSGTMPGCVNNFSAMA--TIDSSHQSNAM--SYFEVTAYDCEVLEDASIV 593
           L  LD + N+LSGT+P  +++   +   T D +  S A+  SY   +    ++    +I 
Sbjct: 127 LVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFS----KLFTSMTIS 182
Query: 594 ---MKGSMVEYNSILNLVRIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQIPENI 650
              + G +    + LNL   +D+S+N   G+  +     +  Q ++L+ N     + + +
Sbjct: 183 RNRLTGKIPPTFANLNLA-FVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-V 240
Query: 651 GNLISIESLDFSTNQXXXXXXXXXXXXXXXNHLNVSNNLLTGKIPSSTQLQSFDASCFVG 710
           G   ++  LD   N+               + LNVS N L G+IP    LQ FD S +  
Sbjct: 241 GLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYAN 300
Query: 711 NN-LCGPPLPSCT 722
           N  LCG PLP+CT
Sbjct: 301 NKCLCGSPLPACT 313

>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And Hagfish Vlrb.61 Length = 570

Iteration: 1
 Score = 53.5 bits (127), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 122/487 (25%), Positives = 194/487 (39%), Gaps = 75/487 (15%)
Query: 116 LKHLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRCLDLSW 175
           L HL+ L L+GN  Q + +  + G L +L+ L       A +    +G+L  L+ L+++ 
Sbjct: 75  LSHLSTLILTGNPIQSLALGAFSG-LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAH 133
Query: 176 SEYALQVHSFSWLSGQIPNRLGNLTSLRHLDLSANKFNSTTAGWLSKFNHLEFLSLSS-- 233
           +     + SF     ++P    NLT+L HLDLS+NK  S     L   + +  L+LS   
Sbjct: 134 N----LIQSF-----KLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDL 184
Query: 234 -----NGLQ-GTISSIGLENLTSIKTIDLSLN---------------------FELGGPI 266
                N +Q G    I L  LT     D SLN                     F   G +
Sbjct: 185 SLNPMNFIQPGAFKEIRLHKLTLRNNFD-SLNVMKTCIQGLAGLEVHRLVLGEFRNEGNL 243
Query: 267 ----PTSFVRLCELTSIDVSDVKLSQDLSQVLDILSACGASALESLVFSSSQISGHLTSQ 322
                ++   LC LT  +     L   L  ++D+ +     +  SLV  + +     +  
Sbjct: 244 EKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYN 303
Query: 323 LGQFKSLRTLSLDDNCISGPLPPAXXXXXXXXXXXXXXNMLNGSIPLSLGKISHLEYLDL 382
            G ++ L  +    NC  G  P                    G    S   +  LE+LDL
Sbjct: 304 FG-WQHLELV----NCKFGQFPTLKLKSLKRLTFTSN----KGGNAFSEVDLPSLEFLDL 354
Query: 383 SNNKMN--GTLSEIHFVNLTKLTWFSASGNSLILQVNPNWVPPFQLKTLLLMSCHLGP-- 438
           S N ++  G  S+  F   T L +   S N +I  ++ N++   QL+ L     +L    
Sbjct: 355 SRNGLSFKGCCSQSDF-GTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMS 412
Query: 439 QFPSWLHSQKNLSVLDISNARISDTIPRWFWNSIFQLSGIIPESFKNFSNLEVLNLGDNE 498
           +F  +L S +NL  LDIS+     T  R  +N IF             S+LEVL +  N 
Sbjct: 413 EFSVFL-SLRNLIYLDISH-----THTRVAFNGIF----------NGLSSLEVLKMAGNS 456
Query: 499 FVGKIPTWMGEGFTSLLILILRSNKFDGFLPIQLCRLTSLQILDVANNSLSGTMPGCVNN 558
           F       +     +L  L L   + +   P     L+SLQ+L++A+N L     G  + 
Sbjct: 457 FQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDR 516
Query: 559 FSAMATI 565
            +++  I
Sbjct: 517 LTSLQKI 523

>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex Length = 462

Iteration: 1
 Score = 53.1 bits (126), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 94/310 (30%), Positives = 147/310 (47%), Gaps = 42/310 (13%)
Query: 116 LKHLTHL-DLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRCLDLS 174
           LK+LT L D+  N+ Q   I   L +L NL  L L   +   I P  L NL+NL  L+LS
Sbjct: 81  LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELS 137
Query: 175 WSEYA----------LQVHSFSWLSGQIPN--RLGNLTSLRHLDLSANKFNSTTAGWLSK 222
            +  +          LQ  SFS  S Q+ +   L NLT+L  LD+S+NK +  +   L+K
Sbjct: 138 SNTISDISALSGLTSLQQLSFS--SNQVTDLKPLANLTTLERLDISSNKVSDISV--LAK 193
Query: 223 FNHLEFLSLSSNGLQGTISSIGLENLTSIKTIDLSLNFELGGPIPTSFVRLCELTSIDVS 282
             +LE L +++N     I+ +G+  LT++   +LSLN      I T    L  LT +D++
Sbjct: 194 LTNLESL-IATNNQISDITPLGI--LTNLD--ELSLNGNQLKDIGT-LASLTNLTDLDLA 247
Query: 283 DVKLSQDLSQVLDILSACGASALESLVFSSSQISGHLTSQLGQFKSLRTLSLDDNCISGP 342
           +       +Q+ ++    G + L  L   ++QIS    S L    +L  L L++N +   
Sbjct: 248 N-------NQISNLAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED- 297
Query: 343 LPPAXXXXXXXXXXXXXXNMLNGSIPLSLGKISHLEYLDLSNNKMNGTLSEIHFVNLTKL 402
           + P               N+ + S P+S   ++ L+ L  SNNK++   S     NLT +
Sbjct: 298 ISPISNLKNLTYLTLYFNNISDIS-PVS--SLTKLQRLFFSNNKVSDVSS---LANLTNI 351
Query: 403 TWFSASGNSL 412
            W SA  N +
Sbjct: 352 NWLSAGHNQI 361

>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX Length = 462

Iteration: 1
 Score = 51.6 bits (122), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 93/310 (30%), Positives = 144/310 (46%), Gaps = 42/310 (13%)
Query: 116 LKHLTHL-DLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRCLDLS 174
           LK+LT L D+  N+ Q   I   L +L NL  L L   +   I P  L NL+NL  L+LS
Sbjct: 81  LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELS 137
Query: 175 WSEYA----------LQVHSFSWLSGQIPN--RLGNLTSLRHLDLSANKFNSTTAGWLSK 222
            +  +          LQ  SFS  S Q+ +   L NLT+L  LD+S+NK +  +   L+K
Sbjct: 138 SNTISDISALSGLTSLQQLSFS--SNQVTDLKPLANLTTLERLDISSNKVSDISV--LAK 193
Query: 223 FNHLEFLSLSSNGLQGTISSIGLENLTSIKTIDLSLNFELGGPIPTSFVRLCELTSIDVS 282
             +LE L +++N     I+ +G+  LT++   +LSLN      I T    L  LT +D++
Sbjct: 194 LTNLESL-IATNNQISDITPLGI--LTNLD--ELSLNGNQLKDIGT-LASLTNLTDLDLA 247
Query: 283 DVKLSQDLSQVLDILSACGASALESLVFSSSQISGHLTSQLGQFKSLRTLSLDDNCISGP 342
           +       +Q+ ++    G + L  L   ++QIS    S L    +L  L L++N +   
Sbjct: 248 N-------NQISNLAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED- 297
Query: 343 LPPAXXXXXXXXXXXXXXNMLNGSIPLSLGKISHLEYLDLSNNKMNGTLSEIHFVNLTKL 402
           + P               N+ + S   SL K+  L +    NNK++   S     NLT +
Sbjct: 298 ISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFY---NNKVSDVSS---LANLTNI 351
Query: 403 TWFSASGNSL 412
            W SA  N +
Sbjct: 352 NWLSAGHNQI 361

>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex Length = 461

Iteration: 1
 Score = 50.8 bits (120), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 92/311 (29%), Positives = 145/311 (46%), Gaps = 45/311 (14%)
Query: 116 LKHLTHL-DLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRCLDLS 174
           LK+LT L D+  N+ Q   I   L +L NL  L L   +   I P  L NL+NL  L+LS
Sbjct: 81  LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELS 137
Query: 175 WSEYALQVHSFSWLSG-----------QIPN--RLGNLTSLRHLDLSANKFNSTTAGWLS 221
            +     +   S LSG           Q+ +   L NLT+L  LD+S+NK +  +   L+
Sbjct: 138 SNT----ISDISALSGLTSLQQLNFGNQVTDLKPLANLTTLERLDISSNKVSDISV--LA 191
Query: 222 KFNHLEFLSLSSNGLQGTISSIGLENLTSIKTIDLSLNFELGGPIPTSFVRLCELTSIDV 281
           K  +LE L +++N     I+ +G+  LT++   +LSLN      I T    L  LT +D+
Sbjct: 192 KLTNLESL-IATNNQISDITPLGI--LTNLD--ELSLNGNQLKDIGT-LASLTNLTDLDL 245
Query: 282 SDVKLSQDLSQVLDILSACGASALESLVFSSSQISGHLTSQLGQFKSLRTLSLDDNCISG 341
           ++       +Q+ ++    G + L  L   ++QIS    S L    +L  L L++N +  
Sbjct: 246 AN-------NQISNLAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED 296
Query: 342 PLPPAXXXXXXXXXXXXXXNMLNGSIPLSLGKISHLEYLDLSNNKMNGTLSEIHFVNLTK 401
            + P               N+ + S P+S   ++ L+ L  SNNK++   S     NLT 
Sbjct: 297 -ISPISNLKNLTYLTLYFNNISDIS-PVS--SLTKLQRLFFSNNKVSDVSS---LANLTN 349
Query: 402 LTWFSASGNSL 412
           + W SA  N +
Sbjct: 350 INWLSAGHNQI 360

>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX Length = 462

Iteration: 1
 Score = 50.1 bits (118), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 92/310 (29%), Positives = 144/310 (46%), Gaps = 42/310 (13%)
Query: 116 LKHLTHL-DLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRCLDLS 174
           LK+LT L D+  N+ Q   I   L +L NL  L L   +   I P  L NL+NL  L+LS
Sbjct: 81  LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELS 137
Query: 175 WSEYA----------LQVHSFSWLSGQIPN--RLGNLTSLRHLDLSANKFNSTTAGWLSK 222
            +  +          LQ  +FS  S Q+ +   L NLT+L  LD+S+NK +  +   L+K
Sbjct: 138 SNTISDISALSGLTSLQQLNFS--SNQVTDLKPLANLTTLERLDISSNKVSDISV--LAK 193
Query: 223 FNHLEFLSLSSNGLQGTISSIGLENLTSIKTIDLSLNFELGGPIPTSFVRLCELTSIDVS 282
             +LE L +++N     I+ +G+  LT++   +LSLN      I T    L  LT +D++
Sbjct: 194 LTNLESL-IATNNQISDITPLGI--LTNLD--ELSLNGNQLKDIGT-LASLTNLTDLDLA 247
Query: 283 DVKLSQDLSQVLDILSACGASALESLVFSSSQISGHLTSQLGQFKSLRTLSLDDNCISGP 342
           +       +Q+ ++    G + L  L   ++QIS    S L    +L  L L++N +   
Sbjct: 248 N-------NQISNLAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED- 297
Query: 343 LPPAXXXXXXXXXXXXXXNMLNGSIPLSLGKISHLEYLDLSNNKMNGTLSEIHFVNLTKL 402
           + P               N+ + S   SL K+  L +    NNK++   S     NLT +
Sbjct: 298 ISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFY---NNKVSDVSS---LANLTNI 351
Query: 403 TWFSASGNSL 412
            W SA  N +
Sbjct: 352 NWLSAGHNQI 361

>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps Ra Complex Length = 605

Iteration: 1
 Score = 49.3 bits (116), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 137/566 (24%), Positives = 213/566 (37%), Gaps = 122/566 (21%)
Query: 116 LKHLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRCLDLSW 175
           L HL+ L L+GN  Q + +  + G L +L+ L       A +    +G+L  L+ L+++ 
Sbjct: 75  LSHLSTLILTGNPIQSLALGAFSG-LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAH 133
Query: 176 SEYALQVHSFSWLSGQIPNRLGNLTSLRHLDLSANKFNSTTAGWLSKFNHLEFLSLSS-- 233
           +     + SF     ++P    NLT+L HLDLS+NK  S     L   + +  L+LS   
Sbjct: 134 N----LIQSF-----KLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDL 184
Query: 234 -----NGLQ-GTISSIGLENLTSIKTIDLSLN---------------------FELGGPI 266
                N +Q G    I L  LT     D SLN                     F   G +
Sbjct: 185 SLNPMNFIQPGAFKEIRLHKLTLRNNFD-SLNVMKTCIQGLAGLEVHRLVLGEFRNEGNL 243
Query: 267 ----PTSFVRLCELTSIDVSDVKLSQDLSQVLDILSACGASALESLVFSSSQISGHLTSQ 322
                ++   LC LT  +     L   L  ++D+ +     +  SLV  + +     +  
Sbjct: 244 EKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYN 303
Query: 323 LGQFKSLRTLSLDDNCISGPLPPAXXXXXXXXXXXXXXNMLNGSIPLSLGKISHLEYLDL 382
            G ++ L  +    NC  G  P                    G    S   +  LE+LDL
Sbjct: 304 FG-WQHLELV----NCKFGQFPTLKLKSLKRLTFTSN----KGGNAFSEVDLPSLEFLDL 354
Query: 383 SNNKMN--GTLSEIHFVNLTKLTWFSASGNSLILQVNPNWVPPFQLKTLLLMSCHLGP-- 438
           S N ++  G  S+  F   T L +   S N +I  ++ N++   QL+ L     +L    
Sbjct: 355 SRNGLSFKGCCSQSDF-GTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMS 412
Query: 439 QFPSWLHSQKNLSVLDISNARISDTIPRWFWNSIFQLSGIIPESFKNFSNLEVLNLGDNE 498
           +F  +L S +NL  LDIS+     T  R  +N I          F   S+LEVL +  N 
Sbjct: 413 EFSVFL-SLRNLIYLDISH-----THTRVAFNGI----------FNGLSSLEVLKMAGNS 456
Query: 499 FVGKIPTWMGEGFTSLLILILRSNKFDGFLPIQLCRLTSLQILDVANNSLSGTMPGCVNN 558
           F                         + FLP     L +L  LD++   L    P   N+
Sbjct: 457 FQ------------------------ENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNS 492
Query: 559 FSAMATIDSSHQSNAMSYFEVTAYDCEVLEDASIVMKGSMVEYNSILNLVRIIDVSKNNF 618
            S++  ++ SH  N     +   Y C                    LN ++++D S N+ 
Sbjct: 493 LSSLQVLNMSH--NNFFSLDTFPYKC--------------------LNSLQVLDYSLNHI 530
Query: 619 SGEIPMELTYL-RGLQSLNLSHNIFT 643
                 EL +    L  LNL+ N F 
Sbjct: 531 MTSKKQELQHFPSSLAFLNLTQNDFA 556

>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex Length = 466

Iteration: 1
 Score = 49.3 bits (116), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 91/311 (29%), Positives = 145/311 (46%), Gaps = 45/311 (14%)
Query: 116 LKHLTHL-DLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRCLDLS 174
           LK+LT L D+  N+ Q   I   L +L NL  L L   +   I P  L NL+NL  L+LS
Sbjct: 85  LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELS 141
Query: 175 WSEYALQVHSFSWLSG-----------QIPN--RLGNLTSLRHLDLSANKFNSTTAGWLS 221
            +     +   S LSG           Q+ +   L NLT+L  LD+S+NK +  +   L+
Sbjct: 142 SNT----ISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISV--LA 195
Query: 222 KFNHLEFLSLSSNGLQGTISSIGLENLTSIKTIDLSLNFELGGPIPTSFVRLCELTSIDV 281
           K  +LE L +++N     I+ +G+  LT++   +LSLN      I T    L  LT +D+
Sbjct: 196 KLTNLESL-IATNNQISDITPLGI--LTNLD--ELSLNGNQLKDIGT-LASLTNLTDLDL 249
Query: 282 SDVKLSQDLSQVLDILSACGASALESLVFSSSQISGHLTSQLGQFKSLRTLSLDDNCISG 341
           ++       +Q+ ++    G + L  L   ++QIS    S L    +L  L L++N +  
Sbjct: 250 AN-------NQISNLAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED 300
Query: 342 PLPPAXXXXXXXXXXXXXXNMLNGSIPLSLGKISHLEYLDLSNNKMNGTLSEIHFVNLTK 401
            + P               N+ + S P+S   ++ L+ L  +NNK++   S     NLT 
Sbjct: 301 -ISPISNLKNLTYLTLYFNNISDIS-PVS--SLTKLQRLFFANNKVSDVSS---LANLTN 353
Query: 402 LTWFSASGNSL 412
           + W SA  N +
Sbjct: 354 INWLSAGHNQI 364

>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex Length = 461

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 91/311 (29%), Positives = 142/311 (45%), Gaps = 45/311 (14%)
Query: 116 LKHLTHL-DLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRCLDLS 174
           LK+LT L D+  N+ Q   I   L +L NL  L L   +   I P  L NL+NL  L+LS
Sbjct: 81  LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELS 137
Query: 175 WSEYALQVHSFSWLSG-----------QIPN--RLGNLTSLRHLDLSANKFNSTTAGWLS 221
            +     +   S LSG           Q+ +   L NLT+L  LD+S+NK +  +   L+
Sbjct: 138 SNT----ISDISALSGLTSLQQLNFGNQVTDLKPLANLTTLERLDISSNKVSDISV--LA 191
Query: 222 KFNHLEFLSLSSNGLQGTISSIGLENLTSIKTIDLSLNFELGGPIPTSFVRLCELTSIDV 281
           K  +LE L +++N     I+ +G+  LT++   +LSLN      I T    L  LT +D+
Sbjct: 192 KLTNLESL-IATNNQISDITPLGI--LTNLD--ELSLNGNQLKDIGT-LASLTNLTDLDL 245
Query: 282 SDVKLSQDLSQVLDILSACGASALESLVFSSSQISGHLTSQLGQFKSLRTLSLDDNCISG 341
           ++       +Q+ ++    G + L  L   ++QIS    S L    +L  L L++N +  
Sbjct: 246 AN-------NQISNLAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED 296
Query: 342 PLPPAXXXXXXXXXXXXXXNMLNGSIPLSLGKISHLEYLDLSNNKMNGTLSEIHFVNLTK 401
            + P               N+ + S   SL K+  L +    NNK++   S     NLT 
Sbjct: 297 -ISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFY---NNKVSDVSS---LANLTN 349
Query: 402 LTWFSASGNSL 412
           + W SA  N +
Sbjct: 350 INWLSAGHNQI 360

>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human) Recognition Complex Length = 466

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 91/311 (29%), Positives = 142/311 (45%), Gaps = 45/311 (14%)
Query: 116 LKHLTHL-DLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRCLDLS 174
           LK+LT L D+  N+ Q   I   L +L NL  L L   +   I P  L NL+NL  L+LS
Sbjct: 86  LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELS 142
Query: 175 WSEYALQVHSFSWLSG-----------QIPN--RLGNLTSLRHLDLSANKFNSTTAGWLS 221
            +     +   S LSG           Q+ +   L NLT+L  LD+S+NK +  +   L+
Sbjct: 143 SNT----ISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISV--LA 196
Query: 222 KFNHLEFLSLSSNGLQGTISSIGLENLTSIKTIDLSLNFELGGPIPTSFVRLCELTSIDV 281
           K  +LE L +++N     I+ +G+  LT++   +LSLN      I T    L  LT +D+
Sbjct: 197 KLTNLESL-IATNNQISDITPLGI--LTNLD--ELSLNGNQLKDIGT-LASLTNLTDLDL 250
Query: 282 SDVKLSQDLSQVLDILSACGASALESLVFSSSQISGHLTSQLGQFKSLRTLSLDDNCISG 341
           ++       +Q+ ++    G + L  L   ++QIS    S L    +L  L L++N +  
Sbjct: 251 AN-------NQISNLAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED 301
Query: 342 PLPPAXXXXXXXXXXXXXXNMLNGSIPLSLGKISHLEYLDLSNNKMNGTLSEIHFVNLTK 401
            + P               N+ + S   SL K+  L +    NNK++   S     NLT 
Sbjct: 302 -ISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFY---NNKVSDVSS---LANLTN 354
Query: 402 LTWFSASGNSL 412
           + W SA  N +
Sbjct: 355 INWLSAGHNQI 365

>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex Length = 562

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 116/464 (25%), Positives = 186/464 (40%), Gaps = 77/464 (16%)
Query: 199 LTSLRHLDLSANKFNSTTAGWLSKFNHLEFLSLSSNGLQGTISSIGLENLTSIKTIDLSL 258
           L+ LR L LS N+  S           LE+L +S N LQ     I    + S++ +DLS 
Sbjct: 75  LSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQN----ISCCPMASLRHLDLSF 130
Query: 259 NFELGGPIPTSFVRLCELTSIDVSDVKLSQ-DLSQVLDILSACGASALESLVFSSSQISG 317
           N     P+   F  L +LT + +S  K  Q DL  V  +  +C    L  LV  S  I G
Sbjct: 131 NDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSC---ILLDLV--SYHIKG 185
Query: 318 HLTSQLGQFKSLRTLSLDDNCISGPLPPAXXXXXXXXXXXXXXNMLNGSIPLSLGKISHL 377
             T  L Q  +   L L    +  P                  ++ +  + +S+  + HL
Sbjct: 186 GETESL-QIPNTTVLHL----VFHP-----------------NSLFSVQVNMSVNALGHL 223
Query: 378 EYLDLSNNKMNGTLSEIHFVNLTKLTWFSASGNSLILQVNPNWVPPFQLKTLLLMSCHLG 437
           +   LSN K+N    +     L++LT      N  +  +   W    +L           
Sbjct: 224 Q---LSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFF------- 273
Query: 438 PQFPSWLHSQKNLSVLDISNARISDTIPRW-FWNSIFQLSGIIPESFKN----FS----- 487
                W    + +  L+I N  I++ I R  F  S   L  ++ E  KN    FS     
Sbjct: 274 -----W---PRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALY 325
Query: 488 ------NLEVLNLGDNEFVGKIPTWMGEGFTSLLILILRSNKFDGFLPIQLCRLTSLQIL 541
                 N+++L++ D  F+  +       FT    L    N F   +      L  LQ L
Sbjct: 326 SVFAEMNIKMLSISDTPFIHMVCPPSPSSFT---FLNFTQNVFTDSVFQGCSTLKRLQTL 382
Query: 542 DVANNSLSGTMPGCV--NNFSAMATIDSSHQS-NAMSYFEVTAY--DCEVLEDASIVMKG 596
            +  N L       +   N S++ T+D S  S N+ +Y    A+     VL  +S ++ G
Sbjct: 383 ILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTG 442
Query: 597 SMVEYNSILNLVRIIDVSKNNFSGEIPMELTYLRGLQSLNLSHN 640
           S+  +  +   V+++D+  NN    IP ++T+L+ LQ LN++ N
Sbjct: 443 SV--FRCLPPKVKVLDL-HNNRIMSIPKDVTHLQALQELNVASN 483

>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And Hagfish Vlrb.61 Length = 306

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 73/161 (45%), Gaps = 21/161 (13%)
Query: 80  LSLRNPFRNDLRYATTEYEDYMRSMLSGNVNPSLVDLKHLTHLDLSGNDFQGIRIPKYLG 139
           LSLRN    D+ +  T      R   +G  N     L  L  L ++GN FQ   +P    
Sbjct: 123 LSLRNLIYLDISHTHT------RVAFNGIFN----GLSSLEVLKMAGNSFQENFLPDIFT 172
Query: 140 SLKNLRYLNLSGAEFAGIIPHQLGNLSNLRCLDLSWSEYALQVHSFSWLSGQIPNRLGNL 199
            L+NL +L+LS  +   + P    +LS+L+ L++S + +   + +F +           L
Sbjct: 173 ELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF-FSLDTFPY---------KCL 222
Query: 200 TSLRHLDLSANKFNSTTAGWLSKF-NHLEFLSLSSNGLQGT 239
            SL+ LD S N   ++    L  F + L FL+L+ N    T
Sbjct: 223 NSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT 263

>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g And T399i In Complex With Md-2 And Lps Length = 635

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 73/161 (45%), Gaps = 21/161 (13%)
Query: 80  LSLRNPFRNDLRYATTEYEDYMRSMLSGNVNPSLVDLKHLTHLDLSGNDFQGIRIPKYLG 139
           LSLRN    D+ +  T      R   +G  N     L  L  L ++GN FQ   +P    
Sbjct: 442 LSLRNLIYLDISHTHT------RVAFNGIFN----GLSSLEVLKMAGNSFQENFLPDIFT 491
Query: 140 SLKNLRYLNLSGAEFAGIIPHQLGNLSNLRCLDLSWSEYALQVHSFSWLSGQIPNRLGNL 199
            L+NL +L+LS  +   + P    +LS+L+ L++S + +   + +F +           L
Sbjct: 492 ELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF-FSLDTFPY---------KCL 541
Query: 200 TSLRHLDLSANKFNSTTAGWLSKF-NHLEFLSLSSNGLQGT 239
            SL+ LD S N   ++    L  F + L FL+L+ N    T
Sbjct: 542 NSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT 582

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	794
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-133
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-120
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	6e-25
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	9e-22
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-82
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-71
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-61
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-53
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-11
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	8e-72
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-67
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-63
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-41
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-40
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-36
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-31
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-04
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-66
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	6e-56
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-34
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-34
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-12
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-65
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-56
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-47
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	8e-11
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-08
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	6e-59
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	7e-57
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	6e-40
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	4e-37
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	8e-59
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	9e-57
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-47
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-45
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-31
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-31
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-56
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	7e-49
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-48
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-37
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-43
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	7e-41
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-28
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-26
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-24
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-43
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-37
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-30
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-41
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-37
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-32
1o6v_A	466	Internalin A; bacterial infection, extracellular r	6e-31
1o6v_A	466	Internalin A; bacterial infection, extracellular r	9e-21
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-12
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-40
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-37
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	7e-35
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-31
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-26
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-19
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-36
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-35
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-34
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-30
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-28
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-19
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-32
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	5e-27
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	9e-27
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	8e-25
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-19
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	7e-16
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	5e-07
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-31
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-24
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-21
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	5e-20
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-17
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	6e-17
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	7e-17
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-13
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-30
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-27
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	7e-22
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-15
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-10
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-29
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-21
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	8e-18
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	8e-11
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	6e-07
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-29
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-26
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-22
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-20
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-16
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	8e-12
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	6e-11
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-28
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-26
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	5e-24
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-23
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-19
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-19
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-13
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	8e-09
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-08
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-26
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-21
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	8e-18
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-15
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-15
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-04
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-26
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	5e-21
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-25
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-21
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	4e-21
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	5e-18
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	8e-15
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	8e-11
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-09
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-25
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-24
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	4e-20
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	9e-18
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-13
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-10
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-06
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	9e-04
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	7e-24
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	8e-22
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	6e-21
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-19
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-05
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	8e-24
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	5e-21
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	6e-19
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-16
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	4e-16
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	6e-12
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-10
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-06
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-23
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-22
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	7e-18
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-17
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	9e-10
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-07
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	8e-04
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	4e-22
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	9e-21
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	3e-20
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	9e-08
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-21
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	7e-18
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-16
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	8e-11
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-21
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	6e-16
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	4e-13
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-07
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	4e-04
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	7e-21
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-16
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-16
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	4e-15
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	4e-11
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-10
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-06
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	8e-05
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-04
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-20
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-20
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-19
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	7e-19
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	9e-16
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-13
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-12
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	6e-12
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	6e-10
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	8e-04
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-20
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-16
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	4e-15
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	4e-14
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-13
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-10
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-04
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-20
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-16
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	8e-16
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	4e-15
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-11
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	6e-11
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	6e-07
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	4e-04
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-19
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	7e-18
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	9e-16
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	6e-14
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-08
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-04
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	7e-19
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-13
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-13
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-10
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-08
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	8e-08
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	5e-05
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	9e-19
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	7e-18
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-15
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-14
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-12
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	9e-07
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	3e-17
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-15
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	5e-15
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	8e-14
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	5e-13
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-10
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-10
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-17
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-16
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	5e-14
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-12
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-11
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	6e-07
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-06
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-16
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-10
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	3e-10
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	8e-08
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-06
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-06
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	3e-16
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	6e-16
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-15
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	8e-14
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-13
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-07
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	3e-07
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	1e-15
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-14
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-10
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	1e-04
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	3e-15
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-12
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	3e-11
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-09
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-08
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	6e-07
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	3e-06
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-13
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-09
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	9e-09
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-08
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	4e-04
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	4e-13
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	4e-13
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	9e-10
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	3e-07
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-05
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-12
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	6e-12
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-10
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-08
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	3e-06
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	4e-12
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-09
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-08
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	4e-06
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	7e-06
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	4e-04
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	4e-11
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-10
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	6e-10
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-07
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	8e-07
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	4e-11
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	5e-10
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	3e-08
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	2e-06
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	3e-04
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-10
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	3e-09
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	6e-09
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	7e-09
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-08
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	8e-08
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-10
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	3e-07
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	8e-06
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-04
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	6e-10
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	1e-06
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-06
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	6e-05
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-04
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	8e-09
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	1e-06
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-08
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	9e-08
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	3e-07
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	3e-06
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-05
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	6e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-08
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	7e-07
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-06
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-04
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	2e-08
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	4e-08
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	3e-07
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	3e-06
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	4e-05
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	1e-04
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	2e-07
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	4e-04
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	6e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-07
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	6e-06
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-04
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	4e-07
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	5e-06
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	7e-05
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	6e-07
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	7e-07
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	3e-05
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	8e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	3e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	8e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	5e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	9e-04
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	2e-06
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	2e-05
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	8e-05
3m19_A	251	Variable lymphocyte receptor A diversity region; a	6e-06
3m19_A	251	Variable lymphocyte receptor A diversity region; a	2e-04
3m19_A	251	Variable lymphocyte receptor A diversity region; a	3e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-05
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	2e-05
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	5e-05
3e6j_A	229	Variable lymphocyte receptor diversity region; var	8e-05
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	6e-04

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  413 bits (1064), Expect = e-133
 Identities = 180/631 (28%), Positives = 265/631 (41%), Gaps = 90/631 (14%)

Query: 105 LSGNVNPSLVDLKHLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGN 164
            S  + P L D   L HLD+SGN   G    + + +   L+ LN+S  +F G IP     
Sbjct: 212 FSTGI-PFLGDCSALQHLDISGNKLSG-DFSRAISTCTELKLLNISSNQFVGPIP--PLP 267

Query: 165 LSNLRCLDLSWSEYALQVHSFSWLSGQIPNRL-GNLTSLRHLDLSANKFNSTTAGWLSKF 223
           L +L+ L L+ ++           +G+IP+ L G   +L  LDLS N F      +    
Sbjct: 268 LKSLQYLSLAENK----------FTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSC 317

Query: 224 NHLEFLSLSSNGLQGTISSIGLENLTSIKTIDLSLNFELGGPIPTSFVRLC-ELTSIDVS 282
           + LE L+LSSN   G +    L  +  +K +DLS N E  G +P S   L   L ++D+S
Sbjct: 318 SLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFN-EFSGELPESLTNLSASLLTLDLS 376

Query: 283 DVKLSQDLSQVLDILSACGASALESLVFSSSQISGHLTSQLGQFKSLRTLSLDDNCISGP 342
               S  +   L        + L+ L   ++  +G +   L     L +L L  N +SG 
Sbjct: 377 SNNFSGPILPNL---CQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGT 433

Query: 343 LPPALGDLSSLTRLDLSRNMLNGSIPLSLGKISHLEYLDLSNNKMNGTLSEIHFVNLTKL 402
           +P +LG LS L  L L  NML G IP  L  +  LE L L  N + G +      N T L
Sbjct: 434 IPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPS-GLSNCTNL 492

Query: 403 TWFSASGNSLILQVNPNWVPPFQLKTLLLMSCHLGPQFPSWLHSQKNLSVLDISNARISD 462
            W S S N L                        G   P W+   +NL++L +SN     
Sbjct: 493 NWISLSNNRLT-----------------------GE-IPKWIGRLENLAILKLSN----- 523

Query: 463 TIPRWFWNSIFQLSGIIPESFKNFSNLEVLNLGDNEFVGKIPTWMGEGFTSLLILILRSN 522
                  NS    SG IP    +  +L  L+L  N F G IP  M +         + +N
Sbjct: 524 -------NS---FSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFK-----QSGKIAAN 568

Query: 523 KFDGFLPIQLCRLTSLQILDVANN--SLSGTMPGCVNNFSAMATIDSSHQSNAMSYFEVT 580
              G   + +      +    A N     G     +N  S     + + +          
Sbjct: 569 FIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRV--------- 619

Query: 581 AYDCEVLEDASIVMKGSMVEYNSILNLVRIIDVSKNNFSGEIPMELTYLRGLQSLNLSHN 640
                          G           +  +D+S N  SG IP E+  +  L  LNL HN
Sbjct: 620 -------------YGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHN 666

Query: 641 IFTGQIPENIGNLISIESLDFSTNQLSSKISQSMSSLSFLNHLNVSNNLLTGKIPSSTQL 700
             +G IP+ +G+L  +  LD S+N+L  +I Q+MS+L+ L  +++SNN L+G IP   Q 
Sbjct: 667 DISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQF 726

Query: 701 QSFDASCFVGN-NLCGPPLPSCTENNARAPK 730
           ++F  + F+ N  LCG PLP C  +NA    
Sbjct: 727 ETFPPAKFLNNPGLCGYPLPRCDPSNADGYA 757

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  379 bits (975), Expect = e-120
 Identities = 161/707 (22%), Positives = 256/707 (36%), Gaps = 166/707 (23%)

Query: 27  SDVGCTDSEREALLKLKQDLKDPSNRLGSWVVDGDCCKWAEVVCSNLTGHVLQLSLRNPF 86
           S       E   L+  K  L D  N L  W  + + C +  V C +    V  + L +  
Sbjct: 5   SPSQSLYREIHQLISFKDVLPDK-NLLPDWSSNKNPCTFDGVTCRD--DKVTSIDLSS-- 59

Query: 87  RNDLRYATTEYEDYMRSMLSGNVNPSLVDLKHLTHLDLSGNDFQGIRIPKYLGSLKNLRY 146
              L            ++    V+ SL+ L  L  L LS +   G  +        +L  
Sbjct: 60  -KPL------------NVGFSAVSSSLLSLTGLESLFLSNSHING-SVSG-FKCSASLTS 104

Query: 147 LNLSGAEFAGIIP--HQLGNLSNLRCLDLSWSEYALQVHSFSWLSGQIPNRLG-NLTSLR 203
           L+LS    +G +     LG+ S L+ L++S           + L        G  L SL 
Sbjct: 105 LDLSRNSLSGPVTTLTSLGSCSGLKFLNVSS----------NTLDFPGKVSGGLKLNSLE 154

Query: 204 HLDLSANKFNSTTAGWLSKFN---HLEFLSLSSNGLQGTISSIGLENLTSIKTIDLSLNF 260
            LDLSAN  +          +    L+ L++S N + G +    +    +++ +D+S N 
Sbjct: 155 VLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD---VSRCVNLEFLDVSSN- 210

Query: 261 ELGGPIPTSFVRLCELTSIDVSDVKLSQDLSQVLDILSACGASALESLVFSSSQISGHLT 320
                IP     L + ++                          L+ L  S +++SG  +
Sbjct: 211 NFSTGIPF----LGDCSA--------------------------LQHLDISGNKLSGDFS 240

Query: 321 SQLGQFKSLRTLSLDDNCISGPLPPALGDLSSLTRLDLSRNMLNGSIPLSL-GKISHLEY 379
             +     L+ L++  N   GP+PP    L SL  L L+ N   G IP  L G    L  
Sbjct: 241 RAISTCTELKLLNISSNQFVGPIPPLP--LKSLQYLSLAENKFTGEIPDFLSGACDTLTG 298

Query: 380 LDLSNNKMNGTLSEIHFVNLTKLTWFSASGNSLILQVNPNWVPPFQLKTLLLMSCHLGPQ 439
           LDLS N   G +    F + + L   + S N+                         G  
Sbjct: 299 LDLSGNHFYGAVPP-FFGSCSLLESLALSSNNFS-----------------------GEL 334

Query: 440 FPSWLHSQKNLSVLDISNARISDTIPRWFWNSIFQLSGIIPESFKNFSNLEVLNLGDNEF 499
               L   + L VLD+S    S  +P    N                ++L  L+L  N F
Sbjct: 335 PMDTLLKMRGLKVLDLSFNEFSGELPESLTN--------------LSASLLTLDLSSNNF 380

Query: 500 VGKIPTWMGEG-FTSLLILILRSNKFDGFLPIQLCRLTSLQILDVANNSLSGTMPGCVNN 558
            G I   + +    +L  L L++N F G +P  L   + L  L ++ N LSGT+P  + +
Sbjct: 381 SGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGS 440

Query: 559 FSAMATIDSSHQSNAMSYFEVTAYDCEVLEDASIVMKGSMVEYNSILNLVRIIDVSKNNF 618
            S +                                              R + +  N  
Sbjct: 441 LSKL----------------------------------------------RDLKLWLNML 454

Query: 619 SGEIPMELTYLRGLQSLNLSHNIFTGQIPENIGNLISIESLDFSTNQLSSKISQSMSSLS 678
            GEIP EL Y++ L++L L  N  TG+IP  + N  ++  +  S N+L+ +I + +  L 
Sbjct: 455 EGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLE 514

Query: 679 FLNHLNVSNNLLTGKIPSS----TQLQSFDASCFVGNNLCGPPLPSC 721
            L  L +SNN  +G IP+       L   D +    N   G  +P+ 
Sbjct: 515 NLAILKLSNNSFSGNIPAELGDCRSLIWLDLN---TNLFNG-TIPAA 557

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  109 bits (276), Expect = 6e-25
 Identities = 56/266 (21%), Positives = 88/266 (33%), Gaps = 70/266 (26%)

Query: 104 MLSGNVNPSLVDLKHLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLG 163
             SGN+   L D + L  LDL+ N F G  IP  +         N      AG     + 
Sbjct: 525 SFSGNIPAELGDCRSLIWLDLNTNLFNG-TIPAAMFKQSGKIAANF----IAGKRYVYIK 579

Query: 164 NLSNLRCLDLSWSEYALQVHSFSWLSGQIPNRLGNLTSLRHLDLSANKFNSTTAGWLSKF 223
           N    +    +         +     G    +L  L++    ++++  +   T+      
Sbjct: 580 NDGMKKECHGA--------GNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNN 631

Query: 224 NHLEFLSLSSNGLQGTI-SSIGLENLTSIKTIDLSLNFELGGPIPTSFVRLCELTSIDVS 282
             + FL +S N L G I   IG  ++  +  ++L  N  + G IP     L  L  +D+S
Sbjct: 632 GSMMFLDMSYNMLSGYIPKEIG--SMPYLFILNLGHND-ISGSIPDEVGDLRGLNILDLS 688

Query: 283 DVKLSQDLSQVLDILSACGASALESLVFSSSQISGHLTSQLGQFKSLRTLSLDDNCISGP 342
             KL                                                      G 
Sbjct: 689 SNKLD-----------------------------------------------------GR 695

Query: 343 LPPALGDLSSLTRLDLSRNMLNGSIP 368
           +P A+  L+ LT +DLS N L+G IP
Sbjct: 696 IPQAMSALTMLTEIDLSNNNLSGPIP 721

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =   99 bits (250), Expect = 9e-22
 Identities = 37/178 (20%), Positives = 73/178 (41%), Gaps = 14/178 (7%)

Query: 70  CSNLTGHVLQLSLRNPFRNDLRYATTEYEDYMRSM---LSGNVNPSLVDLKHLTHLDLSG 126
               +G +    +       ++    + E +         G  +  L  L      +++ 
Sbjct: 558 MFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITS 617

Query: 127 NDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRCLDLSWSEYALQVHSFS 186
             + G        +  ++ +L++S    +G IP ++G++  L  L+L  ++         
Sbjct: 618 RVYGG-HTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHND--------- 667

Query: 187 WLSGQIPNRLGNLTSLRHLDLSANKFNSTTAGWLSKFNHLEFLSLSSNGLQGTISSIG 244
            +SG IP+ +G+L  L  LDLS+NK +      +S    L  + LS+N L G I  +G
Sbjct: 668 -ISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMG 724

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  276 bits (707), Expect = 2e-82
 Identities = 131/640 (20%), Positives = 233/640 (36%), Gaps = 86/640 (13%)

Query: 105 LSGNVNPSLVDLKHLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGN 164
           L      +      LT LD+  N    +  P+    L  L+ LNL   E + +       
Sbjct: 37  LRRLPAANFTRYSQLTSLDVGFNTISKL-EPELCQKLPMLKVLNLQHNELSQLSDKTFAF 95

Query: 165 LSNLRCLDLSWSEYALQVHSFSWLSGQIPNRLGNLTSLRHLDLSANKFNSTTAGWLSKFN 224
            +NL  L L  +           +     N      +L  LDLS N  +ST  G   +  
Sbjct: 96  CTNLTELHLMSNS----------IQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLE 145

Query: 225 HLEFLSLSSNGLQGTISS-IGLENLTSIKTIDLSLNFELGGPIPTSFVRLCELTSIDVSD 283
           +L+ L LS+N +Q   S  + +   +S+K ++LS N  +    P  F  +  L  + +++
Sbjct: 146 NLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQ-IKEFSPGCFHAIGRLFGLFLNN 204

Query: 284 VKLSQDLSQVLDILSACGASALESLVFSSSQISGHLTSQLG--QFKSLRTLSLDDNCISG 341
           V+L   L++   +      +++ +L  S+SQ+S    +     ++ +L  L L  N ++ 
Sbjct: 205 VQLGPSLTE--KLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNV 262

Query: 342 PLPPALGDLSSLTRLDLSRNMLNGSIPLSLGKISHLEYLDLSNNKMNGTLSEIHFVNLTK 401
               +   L  L    L  N +      SL  + ++ YL+L  +    ++S     +L K
Sbjct: 263 VGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSIS---LASLPK 319

Query: 402 LTWFSASGNSLILQVNPNWVPPFQLKTLLLMSCHLGPQFPSWLHSQKNLSVLDISNARIS 461
           +  FS                   L+ L +    +     +      NL  L +SN+  S
Sbjct: 320 IDDFSFQWLK-------------CLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTS 366

Query: 462 DT--IPRWFWNSIF-----------QLSGIIPESFKNFSNLEVLNLGDNEFVGKIPTWMG 508
                   F +              ++S I  ++F    +LEVL+LG NE   ++     
Sbjct: 367 LRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEW 426

Query: 509 EGFTSLLILILRSNKFDGFLPIQLCRLTSLQILDVANNSLSG--TMPGCVNNFSAMATID 566
            G  ++  + L  NK+          + SLQ L +   +L    + P        +  +D
Sbjct: 427 RGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILD 486

Query: 567 SSHQSNAMSYFEVTAYDCEVLEDASIVMKGSMVEYNSILNLVRIIDVSKNNFS------- 619
            S+  N ++       + ++LE                L  + I+D+  NN +       
Sbjct: 487 LSN--NNIANI-----NDDMLEG---------------LEKLEILDLQHNNLARLWKHAN 524

Query: 620 -GEIPMELTYLRGLQSLNLSHNIFTGQIPENIGNLISIESLDFSTNQLSSKISQSMSSLS 678
            G     L  L  L  LNL  N F     E   +L  ++ +D   N L++  +   ++  
Sbjct: 525 PGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQV 584

Query: 679 FLNHLNVSNNLLTGKIPSS-----TQLQSFDASCFVGNNL 713
            L  LN+  NL+T             L   D      N  
Sbjct: 585 SLKSLNLQKNLITSVEKKVFGPAFRNLTELDMR---FNPF 621

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  245 bits (627), Expect = 5e-71
 Identities = 123/631 (19%), Positives = 221/631 (35%), Gaps = 92/631 (14%)

Query: 119 LTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRCLDLSWSEY 178
               D S       ++P       N+  LNL+  +   +        S L  LD+ ++  
Sbjct: 6   HEVADCSHLKLT--QVPD--DLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNT- 60

Query: 179 ALQVHSFSWLSGQIPNRLGNLTSLRHLDLSANKFNSTTAGWLSKFNHLEFLSLSSNGLQG 238
                    +S   P     L  L+ L+L  N+ +  +    +   +L  L L SN +Q 
Sbjct: 61  ---------ISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQK 111

Query: 239 TISSIGLENLTSIKTIDLSLNFELGGPIPTSFVRLCELTSIDVSDVKLSQDLSQVLDILS 298
            I +       ++ T+DLS N  L      + V+L  L  + +S+ K+    +   + L 
Sbjct: 112 -IKNNPFVKQKNLITLDLSHNG-LSSTKLGTQVQLENLQELLLSNNKIQ---ALKSEELD 166

Query: 299 ACGASALESLVFSSSQISGHLTSQLGQFKSLRTLSLDDNCISGPLPPALGD---LSSLTR 355
               S+L+ L  SS+QI             L  L L++  +   L   L      +S+  
Sbjct: 167 IFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRN 226

Query: 356 LDLSRNMLNGSIPLSLG--KISHLEYLDLSNNKMNGTLSEIHFVNLTKLTWFSASGNSLI 413
           L LS + L+ +   +    K ++L  LDLS N +N   ++  F  L +L +F    N++ 
Sbjct: 227 LSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDS-FAWLPQLEYFFLEYNNIQ 285

Query: 414 LQVNPNWVPPFQLKTLLLMSCHLGPQFPSWLHSQKNLSVLDISNARISDTIPRWFWN--- 470
              + +    F ++ L L               +++ +   IS A +       F     
Sbjct: 286 HLFSHSLHGLFNVRYLNL---------------KRSFTKQSISLASLPKIDDFSFQWLKC 330

Query: 471 ------SIFQLSGIIPESFKNFSNLEVLNLGDNEFVGKIP---TWMGEGFTSLLILILRS 521
                     + GI    F    NL+ L+L ++    +     T++    + L IL L  
Sbjct: 331 LEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTK 390

Query: 522 NKFDGFLPIQLCRLTSLQILDVANNSLSGTMPGCV-NNFSAMATIDSSHQSNAMSYFEVT 580
           NK           L  L++LD+  N +   + G        +  I  S+  N        
Sbjct: 391 NKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSY--NKYLQLTRN 448

Query: 581 AYDCEVLEDASIVMKGSMVEYNSILNLVRIIDVSKNNFSG--EIPMELTYLRGLQSLNLS 638
           ++                    +++  ++ + + +         P     LR L  L+LS
Sbjct: 449 SF--------------------ALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLS 488

Query: 639 HNIFTGQIPENIGNLISIESLDFSTNQLSS--------KISQSMSSLSFLNHLNVSNNLL 690
           +N       + +  L  +E LD   N L+              +  LS L+ LN+ +N  
Sbjct: 489 NNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGF 548

Query: 691 TGKIPSS----TQLQSFDASCFVGNNLCGPP 717
                       +L+  D      NNL   P
Sbjct: 549 DEIPVEVFKDLFELKIIDLG---LNNLNTLP 576

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  217 bits (554), Expect = 7e-61
 Identities = 118/612 (19%), Positives = 207/612 (33%), Gaps = 109/612 (17%)

Query: 105 LSGNVNPSLVDLKHLTHLDLSGNDFQGI-RIPKYLGSLKNLRYLNLSGAEFAGIIPHQLG 163
           LS     + V L++L  L LS N  Q +      + +  +L+ L LS  +     P    
Sbjct: 133 LSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFH 192

Query: 164 NLSNLRCLDLSWSEYALQVHSFSWLSGQIPNRLG---NLTSLRHLDLSANKFNSTTAGWL 220
            +  L  L L+  +          L   +  +L      TS+R+L LS ++ ++T+    
Sbjct: 193 AIGRLFGLFLNNVQ----------LGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTF 242

Query: 221 S--KFNHLEFLSLSSNGLQGTISSIGLENLTSIKTIDLSLNFELGGPIPTSFVRLCELTS 278
              K+ +L  L LS N L    +      L  ++   L  N  +      S   L  +  
Sbjct: 243 LGLKWTNLTMLDLSYNNLNVVGNDS-FAWLPQLEYFFLEYN-NIQHLFSHSLHGLFNVRY 300

Query: 279 IDVSDVKLSQDLS----QVLDILSACGASALESLVFSSSQISGHLTSQLGQFKSLRTLSL 334
           +++      Q +S      +D  S      LE L    + I G  ++      +L+ LSL
Sbjct: 301 LNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSL 360

Query: 335 DDNCISGPLPPALG----DLSSLTRLDLSRNMLNGSIPLSLGKISHLEYLDLSNNKMNGT 390
            ++  S              S L  L+L++N ++     +   + HLE LDL  N++   
Sbjct: 361 SNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQE 420

Query: 391 LSEIHFVNLTKLTWFSASGNSLILQVNPNWVPPF-QLKTLLLMSCHLG--PQFPSWLHSQ 447
           L+   +  L  +     S N   LQ+  N       L+ L+L    L      PS     
Sbjct: 421 LTGQEWRGLENIFEIYLSYNK-YLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPL 479

Query: 448 KNLSVLDISNARISDTIPRWFWNSIFQLSGIIPESFKNFSNLEVLNLGDNEFVGKIPTWM 507
           +NL++LD+SN            N    ++ I  +  +    LE+L+L  N          
Sbjct: 480 RNLTILDLSN------------N---NIANINDDMLEGLEKLEILDLQHNN--------- 515

Query: 508 GEGFTSLLILILRSNKFDGFLPIQLCRLTSLQILDVANNSLSGTMPGCVNNFSAMATIDS 567
                   +  L  +   G     L  L+ L IL++ +N           +         
Sbjct: 516 --------LARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFE------ 561

Query: 568 SHQSNAMSYFEVTAYDCEVLEDASIVMKGSMVEYNSILNLVRIIDVSKNNFSGEIPMELT 627
                                                   ++IID+  NN +        
Sbjct: 562 ----------------------------------------LKIIDLGLNNLNTLPASVFN 581

Query: 628 YLRGLQSLNLSHNIFTGQIPENIG-NLISIESLDFSTNQLSSKISQSMSSLSFLNHLNVS 686
               L+SLNL  N+ T    +  G    ++  LD   N            ++++N  + +
Sbjct: 582 NQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWINETHTN 641

Query: 687 NNLLTGKIPSST 698
              L+     +T
Sbjct: 642 IPELSSHYLCNT 653

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  194 bits (495), Expect = 7e-53
 Identities = 93/455 (20%), Positives = 158/455 (34%), Gaps = 63/455 (13%)

Query: 116 LKHLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRCLDLSW 175
             +LT LDLS N+   +        L  L Y  L       +  H L  L N+R L+L  
Sbjct: 247 WTNLTMLDLSYNNLNVV-GNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKR 305

Query: 176 SEYALQVHSFSWLSGQIPNRLGNLTSLRHLDLSANKFNSTTAGWLSKFNHLEFLSLSSNG 235
           S     + S + L          L  L HL++  N      +   +   +L++LSLS++ 
Sbjct: 306 SFTKQSI-SLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSF 364

Query: 236 LQ-GTISSIGLENL--TSIKTIDLSLNFELGGPIPTSFVRLCELTSIDVSDVKLSQDLSQ 292
               T+++    +L  + +  ++L+ N ++      +F  L  L  +D+   ++ Q+L+ 
Sbjct: 365 TSLRTLTNETFVSLAHSPLHILNLTKN-KISKIESDAFSWLGHLEVLDLGLNEIGQELTG 423

Query: 293 VLDILSACGASALESLVFSSSQISGHLTSQLGQFKSLRTLSLDDNCISG--PLPPALGDL 350
                       +  +  S ++      +      SL+ L L    +      P     L
Sbjct: 424 --QEWRGL--ENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPL 479

Query: 351 SSLTRLDLSRNMLNGSIPLSLGKISHLEYLDLSNNK-------MNGTLSEIHFVNLTKLT 403
            +LT LDLS N +       L  +  LE LDL +N         N          L+ L 
Sbjct: 480 RNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLH 539

Query: 404 WFSASGNSLILQVNPNWVPPFQLKTLLLMSCHLGPQFPSWLHSQKNLSVLDISNARISDT 463
             +   N        + +P    K L                    L ++D+        
Sbjct: 540 ILNLESNGF------DEIPVEVFKDL------------------FELKIIDLGL------ 569

Query: 464 IPRWFWNSIFQLSGIIPESFKNFSNLEVLNLGDNEFVGKIPTWMGEGFTSLLILILRSNK 523
                 N    L+ +    F N  +L+ LNL  N          G  F +L  L +R N 
Sbjct: 570 ------N---NLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNP 620

Query: 524 FDGFLP-----IQLCRLTSLQILDVANNSLSGTMP 553
           FD         +     T   I +++++ L  T P
Sbjct: 621 FDCTCESIAWFVNWINETHTNIPELSSHYLCNTPP 655

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 66.9 bits (164), Expect = 1e-11
 Identities = 25/128 (19%), Positives = 44/128 (34%), Gaps = 14/128 (10%)

Query: 102 RSMLSGNVNPSLVDLKHLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQ 161
           +    G     L  L HL  L+L  N F  I   +    L  L+ ++L       +    
Sbjct: 521 KHANPGGPIYFLKGLSHLHILNLESNGFDEI-PVEVFKDLFELKIIDLGLNNLNTLPASV 579

Query: 162 LGNLSNLRCLDLSWSEYALQVHSFSWLSGQIPNRLG-NLTSLRHLDLSANKFNST--TAG 218
             N  +L+ L+L  +           ++       G    +L  LD+  N F+ T  +  
Sbjct: 580 FNNQVSLKSLNLQKNL----------ITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIA 629

Query: 219 WLSKFNHL 226
           W   + + 
Sbjct: 630 WFVNWINE 637

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  245 bits (628), Expect = 8e-72
 Identities = 99/614 (16%), Positives = 181/614 (29%), Gaps = 105/614 (17%)

Query: 118 HLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRCLDLSWSE 177
              +LDLS N  + +       S   L+ L+LS  E   I      +LS+L  L L+ + 
Sbjct: 29  STKNLDLSFNPLRHL-GSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87

Query: 178 YALQVHSFSWLSGQIPNRLGNLTSLRHLDLSANKFNSTTAGWLSKFNHLEFLSLSSNGLQ 237
                     +          L+SL+ L        S     +     L+ L+++ N +Q
Sbjct: 88  ----------IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQ 137

Query: 238 GTISSIGLENLTSIKTIDLSLNFELGGPIPTSFVRLCELTSIDVSDVKLSQDLSQVLDIL 297
                    NLT+++ +DLS N  +     T    L ++  +++S       ++ +    
Sbjct: 138 SFKLPEYFSNLTNLEHLDLSSNK-IQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFI--QP 194

Query: 298 SACGASALESLVFSSSQISGHLTSQ-LGQFKSLRTLSLDDNCISG---PLPPALGDLSSL 353
            A     L  L   ++  S ++    +     L    L                  L  L
Sbjct: 195 GAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGL 254

Query: 354 TRLDLSRNMLN------GSIPLSLGKISHLEYLDLSNNKMNGTLSEIHFVNLTKLTWFSA 407
             L +    L         I      ++++    L +  +        F           
Sbjct: 255 CNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD---FSYNFGWQHLEL 311

Query: 408 SGNSLILQVNPNWVPPFQLKTLL-LMSCHLGPQFPSWLHSQKNLSVLDISNARISDTIPR 466
                         P  +LK+L  L                 +L  LD+S          
Sbjct: 312 VNCKF------GQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSR--------- 356

Query: 467 WFWNSIFQLSGIIPESFKNFSNLEVLNLGDNEFVGKIPTWMGEGFTSLLILILRSNKFDG 526
              N +    G   +S    ++L+ L+L  N  +     ++G     L  L  + +    
Sbjct: 357 ---NGL-SFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLG--LEQLEHLDFQHSNLKQ 410

Query: 527 FLPIQ-LCRLTSLQILDVANNSLSGTMPGCVNNFSAMATIDSSHQSNAMSYFEVTAYDCE 585
                    L +L  LD+++        G  N  S++                       
Sbjct: 411 MSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSL----------------------- 447

Query: 586 VLEDASIVMKGSMVEYNSILNLVRIIDVSKNNFSGEI-PMELTYLRGLQSLNLSHNIFTG 644
                                   ++ ++ N+F     P   T LR L  L+LS      
Sbjct: 448 -----------------------EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQ 484

Query: 645 QIPENIGNLISIESLDFSTNQLSSKISQSMSSLSFLNHLNVSNNLLTGKIPSS-----TQ 699
             P    +L S++ L+ S N   S  +     L+ L  L+ S N +            + 
Sbjct: 485 LSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSS 544

Query: 700 LQSFDASCFVGNNL 713
           L   + +    N+ 
Sbjct: 545 LAFLNLT---QNDF 555

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  233 bits (597), Expect = 2e-67
 Identities = 111/607 (18%), Positives = 202/607 (33%), Gaps = 98/607 (16%)

Query: 105 LSGNVNPSLVDLKHLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGN 164
           L    + S      L  LDLS  + Q I       SL +L  L L+G     +       
Sbjct: 40  LRHLGSYSFFSFPELQVLDLSRCEIQTI-EDGAYQSLSHLSTLILTGNPIQSLALGAFSG 98

Query: 165 LSNLRCLDLSWSEYALQVHSFSWLSGQIPNRLGNLTSLRHLDLSANKFNSTTAG-WLSKF 223
           LS+L+ L    +           L+      +G+L +L+ L+++ N   S     + S  
Sbjct: 99  LSSLQKLVAVETN----------LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNL 148

Query: 224 NHLEFLSLSSNGLQGTISSI--GLENLTSIK-TIDLSLNFELGGPIPTSFVRLCELTSID 280
            +LE L LSSN +Q    +    L  +  +  ++DLSLN  +    P +F +   L  + 
Sbjct: 149 TNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP-MNFIQPGAF-KEIRLHKLT 206

Query: 281 VSDVKLSQDLSQVLDILSACGASALESLVFSSSQISGHLTS-QLGQFKSLRTLSLDDNCI 339
           + +   S ++ +    +       +  LV    +  G+L        + L  L++++  +
Sbjct: 207 LRNNFDSLNVMK--TCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRL 264

Query: 340 S------GPLPPALGDLSSLTRLDLSRNMLNGSIPLSLGKISHLEYLDLSNNKMNGTLSE 393
           +        +      L++++   L    +      S       ++L+L N K       
Sbjct: 265 AYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYN--FGWQHLELVNCKFGQ-FPT 321

Query: 394 IHFVNLTKLTWFSASGNSLILQVNPNWVPPFQLKTLLLMSCHLG--PQFPSWLHSQKNLS 451
           +   +L +LT+ S  G +   +V+        L+ L L    L              +L 
Sbjct: 322 LKLKSLKRLTFTSNKGGNAFSEVDLP-----SLEFLDLSRNGLSFKGCCSQSDFGTTSLK 376

Query: 452 VLDISNARISDTIPRWFWNSIFQLSGIIPESFKNFSNLEVLNLGDNEFVGKIPTWMGEGF 511
            LD+S   +                  +  +F     LE L+   +         +    
Sbjct: 377 YLDLSFNGVIT----------------MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSL 420

Query: 512 TSLLILILRSNKFDGFLPIQLCRLTSLQILDVANNSLSGTMPGCVNNFSAMATIDSSHQS 571
            +L+ L +               L+SL++L +A NS        +  F+           
Sbjct: 421 RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDI--FTE---------- 468

Query: 572 NAMSYFEVTAYDCEVLEDASIVMKGSMVEYNSILNLVRIIDVSKNNFSGEIPMELTYLRG 631
                                            L  +  +D+S+       P     L  
Sbjct: 469 ---------------------------------LRNLTFLDLSQCQLEQLSPTAFNSLSS 495

Query: 632 LQSLNLSHNIFTGQIPENIGNLISIESLDFSTNQLSSKISQSMSSL-SFLNHLNVSNNLL 690
           LQ LN+SHN F          L S++ LD+S N + +   Q +    S L  LN++ N  
Sbjct: 496 LQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 555

Query: 691 TGKIPSS 697
                  
Sbjct: 556 ACTCEHQ 562

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  222 bits (568), Expect = 3e-63
 Identities = 100/582 (17%), Positives = 195/582 (33%), Gaps = 69/582 (11%)

Query: 105 LSGNVNPSLVDLKHLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGN 164
           +    + +   L HL+ L L+GN  Q +        L +L+ L       A +    +G+
Sbjct: 64  IQTIEDGAYQSLSHLSTLILTGNPIQSL-ALGAFSGLSSLQKLVAVETNLASLENFPIGH 122

Query: 165 LSNLRCLDLSWSEYALQVHSFSWLSGQIPNRLGNLTSLRHLDLSANKFNSTTAGWLSKFN 224
           L  L+ L+++ +            S ++P    NLT+L HLDLS+NK  S     L   +
Sbjct: 123 LKTLKELNVAHNLIQ---------SFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLH 173

Query: 225 HLEF----LSLSSNGLQGTISSIGLENLTSIKTIDLSLNFELGGPIPTSFVRLCELTSID 280
            +      L LS N +              +  + L  NF+    + T    L  L    
Sbjct: 174 QMPLLNLSLDLSLNPMNFIQPGAF--KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHR 231

Query: 281 VSDVKLSQDLSQVLDILSACGASALESLVFSSSQIS------GHLTSQLGQFKSLRTLSL 334
           +   +   + +      SA     L +L     +++        +        ++ + SL
Sbjct: 232 LVLGEFRNEGNLEKFDKSAL--EGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSL 289

Query: 335 DDNCISGPLPPALGDLSSLTRLDLSRNMLNGSIPLSLGKISHLEYLDLSNNKMNGTLSEI 394
               I                L+L          L L     L+ L  ++NK     S  
Sbjct: 290 VSVTIERVKD--FSYNFGWQHLELVNCKFGQFPTLKL---KSLKRLTFTSNKGGNAFS-- 342

Query: 395 HFVNLTKLTWFSASGNSL--ILQVNPNWVPPFQLKTLLLMSCHLGPQFPSWLHSQKNLSV 452
             V+L  L +   S N L      + +      LK L L    +     ++L  +  L  
Sbjct: 343 -EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLE-QLEH 400

Query: 453 LDISNARISDTIPRWFWNSIF----------QLSGIIPESFKNFSNLEVLNLGDNEFVGK 502
           LD  ++ +        + S+                    F   S+LEVL +  N F   
Sbjct: 401 LDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN 460

Query: 503 IPTWMGEGFTSLLILILRSNKFDGFLPIQLCRLTSLQILDVANNSLSGTMPGCVNNFSAM 562
               +     +L  L L   + +   P     L+SLQ+L++++N+            +++
Sbjct: 461 FLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSL 520

Query: 563 ATIDSSHQSNAMSYFEVTAYDCEVLEDASIVMKGSMVEYNSILNLVRIIDVSKNNFSGEI 622
             +D S   N +   +                           + +  +++++N+F+   
Sbjct: 521 QVLDYSL--NHIMTSKKQE-------------------LQHFPSSLAFLNLTQNDFACTC 559

Query: 623 PME--LTYLRGLQSLNLSHNIFTGQIPENIGNLISIESLDFS 662
             +  L +++  + L +         P +   +  + SL+ +
Sbjct: 560 EHQSFLQWIKDQRQLLVEVERMECATPSDKQGM-PVLSLNIT 600

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  158 bits (402), Expect = 5e-41
 Identities = 93/492 (18%), Positives = 151/492 (30%), Gaps = 75/492 (15%)

Query: 249 TSIKTIDLSLNFELGGPIPTSFVRLCELTSIDVSDVKLSQDLSQVLDILSACGASALESL 308
            S K +DLS N  L      SF                                  L+ L
Sbjct: 28  FSTKNLDLSFNP-LRHLGSYSFFSF-----------------------------PELQVL 57

Query: 309 VFSSSQISGHLTSQLGQFKSLRTLSLDDNCISGPLPPALGDLSSLTRLDLSRNMLNGSIP 368
             S  +I             L TL L  N I      A   LSSL +L      L     
Sbjct: 58  DLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLEN 117

Query: 369 LSLGKISHLEYLDLSNNKMNGTLSEIHFVNLTKLTWFSASGNSLILQVNPNWVPPFQLKT 428
             +G +  L+ L++++N +       +F NLT L     S N +   +    +       
Sbjct: 118 FPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMP 176

Query: 429 LLLMSCHLG----PQFPSWLHSQKNLSVLDISNARISDTIPRWFWNSIFQLSGIIPESFK 484
           LL +S  L              +  L  L + N   S  +                   +
Sbjct: 177 LLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVM--------------KTCIQ 222

Query: 485 NFSNLEVLNLGDNEFVG-----KIPTWMGEGFTSLLILILRSNKFDGF---LPIQLCRLT 536
             + LEV  L   EF       K      EG  +L I   R    D +   +      LT
Sbjct: 223 GLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLT 282

Query: 537 SLQILDVANNSLSGTMPGCVNNFSAMATIDSSHQSNAMSYF-EVTAYDCEVLEDASIVMK 595
           ++    + + ++        +       ++  +       F  +     + L   S    
Sbjct: 283 NVSSFSLVSVTIERVKDF--SYNFGWQHLELVN--CKFGQFPTLKLKSLKRLTFTSNKGG 338

Query: 596 GSMVEYNSILNLVRIIDVSKN--NFSGEIPMELTYLRGLQSLNLSHNIFTGQIPENIGNL 653
            +  E +  L  +  +D+S+N  +F G           L+ L+LS N     +  N   L
Sbjct: 339 NAFSEVD--LPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGL 395

Query: 654 ISIESLDFSTNQLSSKISQSM-SSLSFLNHLNVSNNLLTGKIPSS----TQLQSFDASCF 708
             +E LDF  + L      S+  SL  L +L++S+              + L+    +  
Sbjct: 396 EQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMA-- 453

Query: 709 VGNNLCGPPLPS 720
            GN+     LP 
Sbjct: 454 -GNSFQENFLPD 464

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  157 bits (398), Expect = 2e-40
 Identities = 80/464 (17%), Positives = 131/464 (28%), Gaps = 100/464 (21%)

Query: 104 MLSGNVNP-SLVDLKHLTHLDLSGNDFQGIR-----IPKYLGSLKNLRYLNLSGA---EF 154
             S NV    +  L  L    L   +F+            L  L NL       A    +
Sbjct: 211 FDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYY 270

Query: 155 AGIIPHQLGNLSNLRCLDLSWSEYALQVHSFSWLSGQIPNRLGNLTSLRHLDLSANKFNS 214
              I      L+N+    L              ++ +           +HL+L   KF  
Sbjct: 271 LDDIIDLFNCLTNVSSFSL------------VSVTIERVKDFSYNFGWQHLELVNCKFGQ 318

Query: 215 TTAGWLSKFNHLEFLSLSSNGLQGTISSIGLENLTSIKTIDLSLN-FELGGPIPTSFVRL 273
                L     L F S                +L S++ +DLS N     G    S    
Sbjct: 319 FPTLKLKSLKRLTFTSNKGGNA------FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGT 372

Query: 274 CELTSIDVSDVKLSQDLSQVLDILSACGASALESLVFSSSQISGHLTSQLGQFKSLRTLS 333
                                        ++L+ L  S + +   ++S     + L  L 
Sbjct: 373 -----------------------------TSLKYLDLSFNGVIT-MSSNFLGLEQLEHLD 402

Query: 334 LDDNCISGPLPP-ALGDLSSLTRLDLSRNMLNGSIPLSLGKISHLEYLDLSNNKMNGTLS 392
              + +           L +L  LD+S      +       +S LE L ++ N       
Sbjct: 403 FQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFL 462

Query: 393 EIHFVNLTKLTWFSASGNSLILQVNPNWVPPFQLKTLLLMSCHLGPQFPSWLHSQKNLSV 452
              F  L  LT+   S                QL+ L           P+  +S  +L V
Sbjct: 463 PDIFTELRNLTFLDLSQC--------------QLEQL----------SPTAFNSLSSLQV 498

Query: 453 LDISNARISDTIPRWFWNSIFQLSGIIPESFKNFSNLEVLNLGDNEFVGKIPTWMGEGFT 512
           L++S+            N       +    +K  ++L+VL+   N  +      +    +
Sbjct: 499 LNMSH------------N---NFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPS 543

Query: 513 SLLILILRSNKFDGFLPIQ--LCRLTSLQILDVANNSLSGTMPG 554
           SL  L L  N F      Q  L  +   + L V    +    P 
Sbjct: 544 SLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPS 587

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  143 bits (363), Expect = 5e-36
 Identities = 61/323 (18%), Positives = 111/323 (34%), Gaps = 24/323 (7%)

Query: 103 SMLSGNVNPSLVDLKHLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQL 162
                +    L +L  +    L+  D+    I      L N+   +L       +     
Sbjct: 244 EKFDKSALEGLCNL-TIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD--F 300

Query: 163 GNLSNLRCLDLS---------WSEYALQVHSFSWLSGQIPNRLGNLTSLRHLDLSANKFN 213
                 + L+L              +L+  +F+   G       +L SL  LDLS N  +
Sbjct: 301 SYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLS 360

Query: 214 --STTAGWLSKFNHLEFLSLSSNGLQGTISSIGLENLTSIKTIDLSLNFELGGPIPTS-F 270
                +        L++L LS NG+    S+     L  ++ +D   +  L      S F
Sbjct: 361 FKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFL--GLEQLEHLDFQHS-NLKQMSEFSVF 417

Query: 271 VRLCELTSIDVSDVKLSQDLSQVLDILSACGASALESLVFSSSQISGHLTSQ-LGQFKSL 329
           + L  L  +D+S        + +       G S+LE L  + +    +       + ++L
Sbjct: 418 LSLRNLIYLDISHTHTRVAFNGIF-----NGLSSLEVLKMAGNSFQENFLPDIFTELRNL 472

Query: 330 RTLSLDDNCISGPLPPALGDLSSLTRLDLSRNMLNGSIPLSLGKISHLEYLDLSNNKMNG 389
             L L    +    P A   LSSL  L++S N            ++ L+ LD S N +  
Sbjct: 473 TFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMT 532

Query: 390 TLSEIHFVNLTKLTWFSASGNSL 412
           +  +      + L + + + N  
Sbjct: 533 SKKQELQHFPSSLAFLNLTQNDF 555

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  128 bits (324), Expect = 4e-31
 Identities = 61/299 (20%), Positives = 88/299 (29%), Gaps = 68/299 (22%)

Query: 103 SMLSGNVNPSLVDLKHLTHLDLSGNDFQGI-RIPKYLGSLKNLRYLNLSGAEFAGIIPHQ 161
           +   G    S VDL  L  LDLS N         +      +L+YL+LS       +   
Sbjct: 333 TSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSN 391

Query: 162 LGNLSNLRCLDLSWSEYALQVHSFSWLSGQIPNR-LGNLTSLRHLDLSANKFNSTTAGWL 220
              L  L  LD             S L          +L +L +LD+S         G  
Sbjct: 392 FLGLEQLEHLDF----------QHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIF 441

Query: 221 SKFNHLEFLSLSSNGLQGTISSIGLENLTSIKTIDLSLNFELGGPIPTSFVRLCELTSID 280
           +  + LE L ++ N  Q          L ++  +DLS    L    PT+F          
Sbjct: 442 NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ-LEQLSPTAF---------- 490

Query: 281 VSDVKLSQDLSQVLDILSACGASALESLVFSSSQISGHLTSQLGQFKSLRTLSLDDNCIS 340
                                                          SL+ L++  N   
Sbjct: 491 -------------------------------------------NSLSSLQVLNMSHNNFF 507

Query: 341 GPLPPALGDLSSLTRLDLSRNMLNGSIPLSLGKI-SHLEYLDLSNNKMNGTLSEIHFVN 398
                    L+SL  LD S N +  S    L    S L +L+L+ N    T     F+ 
Sbjct: 508 SLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQ 566

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 42.3 bits (100), Expect = 6e-04
 Identities = 19/107 (17%), Positives = 34/107 (31%), Gaps = 13/107 (12%)

Query: 104 MLSGNVNPSLVDLKHLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQ-- 161
                       L  L  LD S N     +  +      +L +LNL+  +FA    HQ  
Sbjct: 505 NFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSF 564

Query: 162 LGNLSNLRCLDLSWSEYALQVHSFSWLSGQIPNRLGNLTSLRHLDLS 208
           L  + + R L +                   P+    +  +  L+++
Sbjct: 565 LQWIKDQRQLLVEVERM----------ECATPSDKQGM-PVLSLNIT 600

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  231 bits (591), Expect = 1e-66
 Identities = 112/588 (19%), Positives = 189/588 (32%), Gaps = 81/588 (13%)

Query: 110 NPSLVDLKHLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLR 169
           N +   L +LT LDL+      I       S   L  L L+      +    L     L+
Sbjct: 50  NTTFSRLINLTFLDLTRCQIYWI-HEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALK 108

Query: 170 CLDLSWSEYALQVHSFSWLSGQIPNRLGNLTSLRHLDLSANKFNSTTAGWLSKFNHLEFL 229
            L    +           +S      L N  +L  L L +N  +S           L+ L
Sbjct: 109 HLFFIQTG----------ISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVL 158

Query: 230 SLSSNGLQGTISSIGLENLTSIKTIDLSLNFELGGPIPTSFVRLCELTSIDVSDVKLSQD 289
              +N +   +S   + +L     + L+LN      I           S++      +Q+
Sbjct: 159 DFQNNAIH-YLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFG---GTQN 214

Query: 290 LSQVLDILSACGASALESLVFSSSQISGHLTSQLGQFK--SLRTLSLDDNCISGPLPPAL 347
           L  +   L      +L    F          +        S+ +++L  +          
Sbjct: 215 LLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTF 274

Query: 348 GDLSSLTRLDLSRNMLNGSIPLSLGKISHLEYLDLSNNKMNGTLSEIHFVNLTKLTWFSA 407
              S L  LDL+   L+  +P  L  +S L+ L LS NK    L +I   N   LT  S 
Sbjct: 275 HCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFEN-LCQISASNFPSLTHLSI 332

Query: 408 SGNSLILQVNPNWVPPF-QLKTLLLMSCHLG--PQFPSWLHSQKNLSVLDISNARISDTI 464
            GN+  L++    +     L+ L L    +         L +  +L  L++S        
Sbjct: 333 KGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSY------- 385

Query: 465 PRWFWNSIFQLSGIIPESFKNFSNLEVLNLGDNEFVGKIPTWMGEGFTSLLILILRSNKF 524
                N   +   +  E+FK    LE+L+L       K      +    L +L L  +  
Sbjct: 386 -----N---EPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLL 437

Query: 525 DGFLPIQLCRLTSLQILDVANNSLSGTMPGCVNNFSAMATIDSSHQSNAMSYFEVTAYDC 584
           D         L +LQ L++  N          N+                          
Sbjct: 438 DISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQT----------------------- 474

Query: 585 EVLEDASIVMKGSMVEYNSILNLVRIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTG 644
                               L  + I+ +S  + S       T L+ +  ++LSHN  T 
Sbjct: 475 --------------------LGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTS 514

Query: 645 QIPENIGNLISIESLDFSTNQLSSKISQSMSSLSFLNHLNVSNNLLTG 692
              E + +L  I  L+ ++N +S  +   +  LS    +N+  N L  
Sbjct: 515 SSIEALSHLKGIY-LNLASNHISIILPSLLPILSQQRTINLRQNPLDC 561

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  201 bits (514), Expect = 6e-56
 Identities = 103/592 (17%), Positives = 176/592 (29%), Gaps = 114/592 (19%)

Query: 116 LKHLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRCLDLSW 175
                 L+ S N    I        L NL +L+L+  +   I      +   L  L L+ 
Sbjct: 32  PNSTECLEFSFNVLPTI-QNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLT- 89

Query: 176 SEYALQVHSFSWLSGQIPNRLGNLTSLRHLDLSANKFNSTTAGWLSKFNHLEFLSLSSNG 235
                     + L       L    +L+HL       +S     L     LE L L SN 
Sbjct: 90  ---------ANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNH 140

Query: 236 LQGTISSIGLENLTSIKTIDLSLNFELGGPIPTSFVRLCELT--SIDVSDVKLSQDLSQV 293
           +              +K +D   N  +          L + T  S++++   ++      
Sbjct: 141 ISSIKLPK-GFPTEKLKVLDFQNNA-IHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGA 198

Query: 294 LDILSACGASALESLVFSSSQISGHLTSQLG--QFKSLRTLSLDDNCISGPLPPALGDLS 351
            D          +SL F  +Q    +   L     +SL   + +D       P     L 
Sbjct: 199 FDSAV------FQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLC 252

Query: 352 --SLTRLDLSRNMLNGSIPLSLGKISHLEYLDLSNNKMNGTLSEIHFVNLTKLTWFSASG 409
             S+  ++L ++        +    S L+ LDL+   ++   S    V L+ L     S 
Sbjct: 253 EMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPS--GLVGLSTLKKLVLSA 310

Query: 410 NSLILQVNPNWVPPFQLKTLLLMSCHLGPQFPSWLHSQKNLSVLDISNARISDTIPRWFW 469
           N          +                           +L+ L I              
Sbjct: 311 NKF------ENLCQISASNF------------------PSLTHLSIKG------------ 334

Query: 470 NSIFQLSGIIPESFKNFSNLEVLNLGDNEFVGKIPTWMG-EGFTSLLILILRSNKFDGFL 528
           N+      +     +N  NL  L+L  ++        +     + L  L L  N+     
Sbjct: 335 NTK--RLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLK 392

Query: 529 PIQLCRLTSLQILDVANNSLSGTMPGCVNNFSAMATIDSSHQSNAMSYFEVTAYDCEVLE 588
                    L++LD+A   L                          S F           
Sbjct: 393 TEAFKECPQLELLDLAFTRLKVKDAQ--------------------SPF----------- 421

Query: 589 DASIVMKGSMVEYNSILNLVRIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTG---Q 645
                           L+L++++++S +            L  LQ LNL  N F     Q
Sbjct: 422 --------------QNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQ 467

Query: 646 IPENIGNLISIESLDFSTNQLSSKISQSMSSLSFLNHLNVSNNLLTGKIPSS 697
              ++  L  +E L  S   LSS    + +SL  +NH+++S+N LT     +
Sbjct: 468 KTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEA 519

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  138 bits (350), Expect = 2e-34
 Identities = 68/316 (21%), Positives = 114/316 (36%), Gaps = 23/316 (7%)

Query: 105 LSGNVNPSLVDLKHLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGN 164
                + +      L  LDL+        +P  L  L  L+ L LS  +F  +      N
Sbjct: 266 FFNISSNTFHCFSGLQELDLTATHLS--ELPSGLVGLSTLKKLVLSANKFENLCQISASN 323

Query: 165 LSNLRCLDLSW--SEYALQVHSFSWL---------------SGQIPNRLGNLTSLRHLDL 207
             +L  L +        L       L               S     +L NL+ L+ L+L
Sbjct: 324 FPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNL 383

Query: 208 SANKFNSTTAGWLSKFNHLEFLSLSSNGLQGTISSIGLENLTSIKTIDLSLNFELGGPIP 267
           S N+  S       +   LE L L+   L+   +    +NL  +K ++LS +  L     
Sbjct: 384 SYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSL-LDISSE 442

Query: 268 TSFVRLCELTSIDVSDVKLSQDLSQVLDILSACGASALESLVFSSSQISGHLTSQLGQFK 327
             F  L  L  +++      +   Q  + L       LE LV S   +S          K
Sbjct: 443 QLFDGLPALQHLNLQGNHFPKGNIQKTNSLQ--TLGRLEILVLSFCDLSSIDQHAFTSLK 500

Query: 328 SLRTLSLDDNCISGPLPPALGDLSSLTRLDLSRNMLNGSIPLSLGKISHLEYLDLSNNKM 387
            +  + L  N ++     AL  L  +  L+L+ N ++  +P  L  +S    ++L  N +
Sbjct: 501 MMNHVDLSHNRLTSSSIEALSHLKGIY-LNLASNHISIILPSLLPILSQQRTINLRQNPL 559

Query: 388 NGTLSEIHFVNLTKLT 403
           + T S I+F+   K  
Sbjct: 560 DCTCSNIYFLEWYKEN 575

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  138 bits (349), Expect = 3e-34
 Identities = 67/430 (15%), Positives = 132/430 (30%), Gaps = 55/430 (12%)

Query: 303 SALESLVFSSSQISGHLTSQLGQFKSLRTLSLDDNCISGPLPPALGDLSSLTRLDLSRNM 362
           ++ E L FS + +     +   +  +L  L L    I             L  L L+ N 
Sbjct: 33  NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANP 92

Query: 363 LNGSIPLSLGKISHLEYLDLSNNKMNGTLSEIHFVNLTKLTWFSASGNSLILQVNPNWVP 422
           L      +L     L++L      ++  +  I   N   L       N +     P   P
Sbjct: 93  LIFMAETALSGPKALKHLFFIQTGISS-IDFIPLHNQKTLESLYLGSNHISSIKLPKGFP 151

Query: 423 PFQLKTLLLMSCHLGPQFPSWLHSQKNLSV--LDISNARISDTIPRWFWNSIFQLSGIIP 480
             +LK L   +  +       + S +  +   L+++   I+                 I 
Sbjct: 152 TEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAG----------------IE 195

Query: 481 ESFKNFSNLEVLNLGDNEFVGKIPTWM-GEGFTSLLILILRSNKFDGFLP--IQLCRLTS 537
               + +  + LN G  + +  I   +      SL +        +   P   +     S
Sbjct: 196 PGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMS 255

Query: 538 LQILDVANNSLSGTMPGCVNNFSAMATIDSSHQSNAMSYFEVTAYDCEVLEDASIVMKGS 597
           ++ +++  +          + FS +  +D +     +S           L+         
Sbjct: 256 VESINLQKHYFFNISSNTFHCFSGLQELDLTA--THLSELPSGLVGLSTLK--------- 304

Query: 598 MVEYNSILNLVRIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQIPEN-IGNLISI 656
                  L L      S N F     +  +    L  L++  N    ++    + NL ++
Sbjct: 305 ------KLVL------SANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENL 352

Query: 657 ESLDFSTNQLSSK--ISQSMSSLSFLNHLNVSNNLLTGKIPSS----TQLQSFDASCFVG 710
             LD S + + +    +  + +LS L  LN+S N        +     QL+  D +    
Sbjct: 353 RELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLA---F 409

Query: 711 NNLCGPPLPS 720
             L      S
Sbjct: 410 TRLKVKDAQS 419

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 69.7 bits (171), Expect = 2e-12
 Identities = 37/249 (14%), Positives = 63/249 (25%), Gaps = 51/249 (20%)

Query: 479 IPESFKNFSNLEVLNLGDNEFVGKIPTWMGEGFTSLLILILRSNKFDGFLPIQLCRLTSL 538
           IP +    ++ E L    N     I         +L  L L   +              L
Sbjct: 27  IPGTL--PNSTECLEFSFNVLPT-IQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRL 83

Query: 539 QILDVANNSLSGTMPGCVNNFSAMATIDSSHQSNAMSYFEVTAYDCEVLEDASIVMKGSM 598
             L +  N L       ++                                         
Sbjct: 84  DTLVLTANPLIFMAETALSGPK-------------------------------------- 105

Query: 599 VEYNSILNLVRIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQIPENIGNLISIES 658
                   L + +   +   S    + L   + L+SL L  N  +            ++ 
Sbjct: 106 -------AL-KHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKV 157

Query: 659 LDFSTNQLSSKISQSMSSLSFLNH--LNVSNNLLTGKIPSSTQLQSFDASCFVGNNLCGP 716
           LDF  N +     + MSSL    +  LN++ N + G  P +     F +  F G      
Sbjct: 158 LDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLV 217

Query: 717 PLPSCTENN 725
                  + 
Sbjct: 218 IFKGLKNST 226

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  229 bits (586), Expect = 1e-65
 Identities = 105/685 (15%), Positives = 188/685 (27%), Gaps = 138/685 (20%)

Query: 50  SNRLGSWVVDGDCCKWAE---VVCSNLTGHVLQLSLRNPFRNDLRYATTEYEDYMRSMLS 106
           +    +W  + +   W     V  ++  G V  LSL                       S
Sbjct: 54  TQPGANWNFNKELDMWGAQPGVSLNSN-GRVTGLSLEG------------------FGAS 94

Query: 107 GNVNPSLVDLKHLTHLDLSGNDFQG---IRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLG 163
           G V  ++  L  L  L L  +  +    +  PK + +  +          +         
Sbjct: 95  GRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDP 154

Query: 164 NLSNLRCLDLSWSE---------------YALQVHSFSWLSGQIPNRLGNLTSLRHLDLS 208
                  +    +                   Q+   S     +   +  LT LR   + 
Sbjct: 155 REDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMG 214

Query: 209 ANKFNSTTAGWLSKFNHLEFLSLSSNGLQGTISSIGLENLTSIKTIDLSLNFELGGPIPT 268
            + F +       +  + E+              +  +NL  +  +++     L   +PT
Sbjct: 215 NSPFVAENICEAWENENSEYAQQYKT------EDLKWDNLKDLTDVEVYNCPNLT-KLPT 267

Query: 269 SFVRLCELTSIDVSD---VKLSQDLSQVLDILSACGASALESLVFSSSQI-SGHLTSQLG 324
               L E+  I+V+    +   Q       +  A     ++ +    + + +  + + L 
Sbjct: 268 FLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQ 327

Query: 325 QFKSLRTLSLDDNCISGPLPPALGDLSSLTRLDLSRNMLNGSIPLSLGKISHLEYLDLSN 384
           + K L  L    N + G   PA G    L  L+L+ N +        G    +E L  ++
Sbjct: 328 KMKKLGMLECLYNQLEG-KLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAH 386

Query: 385 NKMNGTLSEIHFVNLTKLTWFSASGNSLILQVNPNWVPPFQLKTLLLMSCHLGPQFPSWL 444
           NK+    +     +++ ++    S N +        V       L               
Sbjct: 387 NKLKYIPNIFDAKSVSVMSAIDFSYNEI------GSVDGKNFDPL-----------DPTP 429

Query: 445 HSQKNLSVLDISNARISDTIPRWFWNSIFQLSGIIPESFKNFSNLEVLNLGDNEFVGKIP 504
               N+S +++SN            N   Q+S    E F   S L  +NL  N     IP
Sbjct: 430 FKGINVSSINLSN------------N---QISKFPKELFSTGSPLSSINLMGNMLTE-IP 473

Query: 505 TWMGEGF-------TSLLILILRSNKFDGFLP-IQLCRLTSLQILDVANNSLSGTMPGCV 556
               +           L  + LR NK        +   L  L  +D++ NS S   P   
Sbjct: 474 KNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK-FPTQP 532

Query: 557 NNFSAMATIDSSHQSNAMSYFEVTAYDCEVLEDASIVMKGSMVEYNSILNLVRIIDVSKN 616
            N S +                                            +    D   N
Sbjct: 533 LNSSTL----------------------------------------KGFGIRNQRDAQGN 552

Query: 617 NFSGEIPMELTYLRGLQSLNLSHNIFTGQIPENIGNLISIESLDFSTNQLSSKISQSMSS 676
               E P  +T    L  L +  N     + E I    +I  LD   N   S     +  
Sbjct: 553 RTLREWPEGITLCPSLTQLQIGSNDIRK-VNEKI--TPNISVLDIKDNPNISIDLSYVCP 609

Query: 677 LSFLNHLNVSNNLLTGKIPSSTQLQ 701
                   +  +     I     L 
Sbjct: 610 YIEAGMYMLFYDKTQ-DIRGCDALD 633

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  203 bits (518), Expect = 3e-56
 Identities = 84/600 (14%), Positives = 166/600 (27%), Gaps = 142/600 (23%)

Query: 138 LGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRCLDLSWSEYALQVHSFSWLSGQIPNRLG 197
           L S   +  L+L G   +G +P  +G L+ L  L L      +    F       P  + 
Sbjct: 77  LNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLF------GPKGIS 130

Query: 198 NLTSLRHLDLSANKFNSTTAGWLSK--FNHLEFLSLSSNGLQGTISSIGLENLTSIKTID 255
              S          +  T   +  +  F+ L    ++S+  Q +I             I 
Sbjct: 131 ANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKS-SRITLKDTQIG 189

Query: 256 LSLNFELGGPIPTSFVRLCELTSIDVSDVKLSQDLSQVLDILSACGASALESLVFSSSQI 315
              N                +T +  + ++L++                L      +S  
Sbjct: 190 QLSN---------------NITFVSKAVMRLTK----------------LRQFYMGNSPF 218

Query: 316 SGHLTSQLGQFKSLRTLSLDDNCISGPLPPALGDLSSLTRLDLSRNMLNGSIPLSLGKIS 375
                 +  + ++                    +L  LT +++        +P  L  + 
Sbjct: 219 VAENICEAWENENSEYAQQ-----YKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALP 273

Query: 376 HLEYLDLSNNKMNGTLSEIHFVNLTKLTWFSASGNSLILQVNPNWVPPFQLKTLLLMSCH 435
            ++ ++++ N+           +   L                       ++ + +   +
Sbjct: 274 EMQLINVACNRGISGEQLKD--DWQALADAPVGEK---------------IQIIYIGYNN 316

Query: 436 L--GPQFPSWLHSQKNLSVLDISNARISDTIPRWFWNSIFQLSGIIPESFKNFSNLEVLN 493
           L   P   + L   K L +L+               N   QL G +P  F +   L  LN
Sbjct: 317 LKTFP-VETSLQKMKKLGMLECLY------------N---QLEGKLPA-FGSEIKLASLN 359

Query: 494 LGDNEFVGKIPTWMGEGFTSLLILILRSNKFDGFLP-IQLCRLTSLQILDVANNSLSGTM 552
           L  N+    IP         +  L    NK            ++ +  +D + N +    
Sbjct: 360 LAYNQITE-IPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVD 418

Query: 553 PGCVNNFSAMATIDSSHQSNAMSYFEVTAYDCEVLEDASIVMKGSMVEYNSILNLV--RI 610
               +                                             +    +    
Sbjct: 419 GKNFDPLDP-----------------------------------------TPFKGINVSS 437

Query: 611 IDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTG-------QIPENIGNLISIESLDFST 663
           I++S N  S       +    L S+NL  N+ T           EN  N   + S+D   
Sbjct: 438 INLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRF 497

Query: 664 NQLSSKISQ-SMSSLSFLNHLNVSNNLLTGKIPSS----TQLQSFDASC---FVGNNLCG 715
           N+L+        ++L +L  +++S N  +   P+     + L+ F         GN    
Sbjct: 498 NKLTKLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLR 556

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  177 bits (450), Expect = 4e-47
 Identities = 73/567 (12%), Positives = 150/567 (26%), Gaps = 129/567 (22%)

Query: 187 WLSGQIPNRLGNLTSLRHLDLSANKFNSTTAGWLSKFNHLEFLSLSSNGLQGTISSIGLE 246
              G       N    + LD+   +   +    L+    +  LSL   G  G +    + 
Sbjct: 48  SQQGFGTQPGANWNFNKELDMWGAQPGVS----LNSNGRVTGLSLEGFGASGRVPD-AIG 102

Query: 247 NLTSIKTIDLSLNFELGGPIPTSFVRLCELTSIDVSDVKLSQDLSQVLDILSACGASALE 306
            LT ++ + L  + E           +    S +             +D       S L 
Sbjct: 103 QLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLI 162

Query: 307 SLVFSSSQISGHLTSQLGQFKSLRTLSLDDNCISGPLPPALGDLSSLTRLDLSRNMLNG- 365
               +S      +            +    N I+  +  A+  L+ L +  +  +     
Sbjct: 163 KDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAE 221

Query: 366 ------------------SIPLSLGKISHLEYLDLSNNKMNGTLSEIHFVNLTKLTWFSA 407
                             +  L    +  L  +++ N      L       L ++   + 
Sbjct: 222 NICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPT-FLKALPEMQLINV 280

Query: 408 SGNSLILQVNPNWVPPFQLKTLLLMSCHLGPQFPSWLHSQKNLSVLDISNARISDTIPRW 467
           + N                  +         Q  +     + + ++ I            
Sbjct: 281 ACNRG----------------ISGEQLKDDWQALADAPVGEKIQIIYIGY---------- 314

Query: 468 FWNSIFQLSGIIPESFKNFSNLEVLNLGDNEFVGKIPTWMGEGFTSLLILILRSNKFDGF 527
             N++   +  +  S +    L +L    N+  GK+P +       L  L L  N+    
Sbjct: 315 --NNL--KTFPVETSLQKMKKLGMLECLYNQLEGKLPAF--GSEIKLASLNLAYNQITE- 367

Query: 528 LPIQLC-RLTSLQILDVANNSLSGTMPGCVNNFSAMATIDSSHQSNAMSYFEVTAYDCEV 586
           +P   C     ++ L  A+N L                I +   + ++S           
Sbjct: 368 IPANFCGFTEQVENLSFAHNKLK--------------YIPNIFDAKSVS----------- 402

Query: 587 LEDASIVMKGSMVEYNSILNLVRIIDVSKNNFSG-------EIPMELTYLRGLQSLNLSH 639
                               +   ID S N            +         + S+NLS+
Sbjct: 403 -------------------VM-SAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSN 442

Query: 640 NIFTGQIPENIGNLISIESLDFSTNQLSS-------KISQSMSSLSFLNHLNVSNNLLTG 692
           N  +    E       + S++   N L+          +++  +   L  +++  N LT 
Sbjct: 443 NQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTK 502

Query: 693 KIPSS------TQLQSFDASCFVGNNL 713
            +           L   D S    N+ 
Sbjct: 503 -LSDDFRATTLPYLVGIDLS---YNSF 525

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 64.3 bits (157), Expect = 8e-11
 Identities = 18/117 (15%), Positives = 36/117 (30%), Gaps = 7/117 (5%)

Query: 608 VRIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQ----IPENIGNLISIESLDFST 663
           V  + +     SG +P  +  L  L+ L L  +          P+ I   +S E      
Sbjct: 83  VTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMR 142

Query: 664 NQLSSKISQSMSSLSFLN--HLNVSNNLLTGKIPSSTQLQSFDAS-CFVGNNLCGPP 717
                          F +     ++++     I  S+++   D     + NN+    
Sbjct: 143 MHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVS 199

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 56.2 bits (136), Expect = 3e-08
 Identities = 10/131 (7%), Positives = 35/131 (26%), Gaps = 16/131 (12%)

Query: 602 NSILNLV--RIIDVSKNNFSG----EIPMELTYLRGLQSLNLSHNIFTGQIPENIGNLI- 654
           ++I  L    ++ +  +          P  ++     +        +     +       
Sbjct: 99  DAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDF 158

Query: 655 -SIESLDFSTNQLSSKISQSMSSLSFLNHLNVSNNLLTGKIPSS----TQLQSFDASCFV 709
             +     +++     I +S         +   +N +T  +  +    T+L+ F      
Sbjct: 159 SDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMG--- 214

Query: 710 GNNLCGPPLPS 720
            +      +  
Sbjct: 215 NSPFVAENICE 225

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  201 bits (515), Expect = 6e-59
 Identities = 80/385 (20%), Positives = 134/385 (34%), Gaps = 96/385 (24%)

Query: 346 ALGDLSSL----TRLDLSRNMLNGSIPLSLGKISHLEYLDLSNNKMNGTLSEIHFV-NLT 400
            LG+ ++L       D       G +  +  +   +  LDLS   +         + NL 
Sbjct: 17  DLGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLP 76

Query: 401 KLTWFS-ASGNSLILQVNPNWVPPFQLKTLLLMSCHLGPQFPSWLHSQKNLSVLDISNAR 459
            L +      N+L+                       GP  P  +     L  L I++  
Sbjct: 77  YLNFLYIGGINNLV-----------------------GP-IPPAIAKLTQLHYLYITH-- 110

Query: 460 ISDTIPRWFWNSIFQLSGIIPESFKNFSNLEVLNLGDNEFVGKIPTWMGEGFTSLLILIL 519
                          +SG IP+       L  L+   N   G +P  +     +L+ +  
Sbjct: 111 ----------T---NVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISS-LPNLVGITF 156

Query: 520 RSNKFDGFLPIQLCRLTSL-QILDVANNSLSGTMPGCVNNFSAMATIDSSHQSNAMSYFE 578
             N+  G +P      + L   + ++ N L+G +P    N                    
Sbjct: 157 DGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFAN-------------------- 196

Query: 579 VTAYDCEVLEDASIVMKGSMVEYNSILNLVRIIDVSKNNFSGEIPMELTYLRGLQSLNLS 638
                                     LNL  + D+S+N   G+  +     +  Q ++L+
Sbjct: 197 --------------------------LNLAFV-DLSRNMLEGDASVLFGSDKNTQKIHLA 229

Query: 639 HNIFTGQIPENIGNLISIESLDFSTNQLSSKISQSMSSLSFLNHLNVSNNLLTGKIPSST 698
            N     + + +G   ++  LD   N++   + Q ++ L FL+ LNVS N L G+IP   
Sbjct: 230 KNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGG 288

Query: 699 QLQSFDASCFVGNN-LCGPPLPSCT 722
            LQ FD S +  N  LCG PLP+CT
Sbjct: 289 NLQRFDVSAYANNKCLCGSPLPACT 313

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  196 bits (500), Expect = 7e-57
 Identities = 89/388 (22%), Positives = 149/388 (38%), Gaps = 95/388 (24%)

Query: 31  CTDSEREALLKLKQDLKDPSNRLGSWVVDGDCC--KWAEVVCSNLT--GHVLQLSLRNPF 86
           C   +++ALL++K+DL +P+  L SW+   DCC   W  V+C   T    V  L L    
Sbjct: 3   CNPQDKQALLQIKKDLGNPTT-LSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSG-- 59

Query: 87  RNDLRYATTEYEDYMRSMLSGNVNPSLVDLKHLTHLDLSG-NDFQGIRIPKYLGSLKNLR 145
             +L                  +  SL +L +L  L + G N+  G  IP  +  L  L 
Sbjct: 60  -LNLP-------------KPYPIPSSLANLPYLNFLYIGGINNLVGP-IPPAIAKLTQLH 104

Query: 146 YLNLSGAEFAGIIPHQLGNLSNLRCLDLSWSEYALQVHSFSWLSGQIPNRLGNLTSLRHL 205
           YL ++    +G IP  L  +  L  LD           S++ LSG +P  + +L +L  +
Sbjct: 105 YLYITHTNVSGAIPDFLSQIKTLVTLDF----------SYNALSGTLPPSISSLPNLVGI 154

Query: 206 DLSANKFNSTTAGWLSKFNHLEFLSLSSNGLQGTI-SSIGLENLTSIKT-IDLSLNFELG 263
               N+ +                        G I  S G  + + + T + +S N  L 
Sbjct: 155 TFDGNRIS------------------------GAIPDSYG--SFSKLFTSMTISRNR-LT 187

Query: 264 GPIPTSFVRLCELTSIDVSDVKLSQDLSQVLDILSACGASALESLVFSSSQISGHLTSQL 323
           G IP +F  L                               L  +  S + + G  +   
Sbjct: 188 GKIPPTFANL------------------------------NLAFVDLSRNMLEGDASVLF 217

Query: 324 GQFKSLRTLSLDDNCISGPLPPALGDLSSLTRLDLSRNMLNGSIPLSLGKISHLEYLDLS 383
           G  K+ + + L  N ++  L   +G   +L  LDL  N + G++P  L ++  L  L++S
Sbjct: 218 GSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVS 276

Query: 384 NNKMNGTLSEIHFVNLTKLTWFSASGNS 411
            N + G + +    NL +    + + N 
Sbjct: 277 FNNLCGEIPQGG--NLQRFDVSAYANNK 302

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  148 bits (377), Expect = 6e-40
 Identities = 63/302 (20%), Positives = 116/302 (38%), Gaps = 50/302 (16%)

Query: 264 GPIPTSFVRLCELTSIDVSDVKLSQDLSQVLDILSACGASALESLVFSSS-QISGHLTSQ 322
           G +  +  +   + ++D+S + L +       +        L  L       + G +   
Sbjct: 40  GVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSL---ANLPYLNFLYIGGINNLVGPIPPA 96

Query: 323 LGQFKSLRTLSLDDNCISGPLPPALGDLSSLTRLDLSRNMLNGSIPLSLGKISHLEYLDL 382
           + +   L  L +    +SG +P  L  + +L  LD S N L+G++P S+  + +L  +  
Sbjct: 97  IAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITF 156

Query: 383 SNNKMNGTLSEIHFVNLTKL-TWFSASGNSLILQVNPNWVPPFQLKTLLLMSCHLGPQFP 441
             N+++G + +  + + +KL T  + S N L                        G   P
Sbjct: 157 DGNRISGAIPD-SYGSFSKLFTSMTISRNRLT-----------------------GK-IP 191

Query: 442 SWLHSQKNLSVLDISNARISDTIPRWFWNSIFQLSGIIPESFKNFSNLEVLNLGDNEFVG 501
               +  NL+ +D+S             N    L G     F +  N + ++L  N    
Sbjct: 192 PTF-ANLNLAFVDLSR------------N---MLEGDASVLFGSDKNTQKIHLAKNSLAF 235

Query: 502 KIPTWMGEGFTSLLILILRSNKFDGFLPIQLCRLTSLQILDVANNSLSGTMP--GCVNNF 559
            +         +L  L LR+N+  G LP  L +L  L  L+V+ N+L G +P  G +  F
Sbjct: 236 DLGKV--GLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRF 293

Query: 560 SA 561
             
Sbjct: 294 DV 295

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  140 bits (356), Expect = 4e-37
 Identities = 67/334 (20%), Positives = 111/334 (33%), Gaps = 90/334 (26%)

Query: 321 SQLGQFKSLRTLSLDDNCISG--PLPPALGDLSSLTRLDLS-RNMLNGSIPLSLGKISHL 377
               Q   +  L L    +    P+P +L +L  L  L +   N L G IP ++ K++ L
Sbjct: 44  DTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQL 103

Query: 378 EYLDLSNNKMNGTL-SEIHFVNLTKLTWFSASGNSLILQVNPNWVPPFQLKTLLLMSCHL 436
            YL +++  ++G +   +    +  L     S N+L                        
Sbjct: 104 HYLYITHTNVSGAIPDFLS--QIKTLVTLDFSYNALS----------------------- 138

Query: 437 GPQFPSWLHSQKNLSVLDISNARISDTIPRWFWN----------SIFQLSGIIPESFKNF 486
           G   P  + S  NL  +     RIS  IP  + +          S  +L+G IP +F N 
Sbjct: 139 GT-LPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL 197

Query: 487 SNLEVLNLGDNEFVGKIPTWMGEGFTSLLILILRSNKFDGFLPIQLCRLTSLQILDVANN 546
            NL  ++L  N   G      G    +   + L  N     L  ++    +L  LD+ NN
Sbjct: 198 -NLAFVDLSRNMLEGDASVLFGS-DKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNN 254

Query: 547 SLSGTMPGCVNNFSAMATIDSSHQSNAMSYFEVTAYDCEVLEDASIVMKGSMVEYNSILN 606
            + GT+P  +     +                                            
Sbjct: 255 RIYGTLPQGLTQLKFL-------------------------------------------- 270

Query: 607 LVRIIDVSKNNFSGEIPMELTYLRGLQSLNLSHN 640
               ++VS NN  GEIP +   L+       ++N
Sbjct: 271 --HSLNVSFNNLCGEIP-QGGNLQRFDVSAYANN 301

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  209 bits (535), Expect = 8e-59
 Identities = 108/595 (18%), Positives = 195/595 (32%), Gaps = 90/595 (15%)

Query: 118 HLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRCLDLSWSE 177
              ++DLS N  + +       +   L++L+LS  E   I       L +L  L L+ + 
Sbjct: 33  STKNIDLSFNPLKIL-KSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNP 91

Query: 178 YALQVHSFSWLSGQIPNRLGNLTSLRHLDLSANKFNSTTAGWLSKFNHLEFLSLSSNGLQ 237
                     +    P     LTSL +L     K  S  +  + +   L+ L+++ N + 
Sbjct: 92  ----------IQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIH 141

Query: 238 GTISSIGLENLTSIKTIDLSLNFELGGPIPTSFVRLCELTSIDVSDVKLSQDLSQVLDIL 297
                    NLT++  +DLS N+ +          L E   +                  
Sbjct: 142 SCKLPAYFSNLTNLVHVDLSYNY-IQTITVNDLQFLRENPQV------------------ 182

Query: 298 SACGASALESLVFSSSQISGHLTSQLGQFKSLRTLSLDDNCISGPLPP-ALGDLSSLTRL 356
                    SL  S + I   +  Q  Q   L  L+L  N  S  +    L +L+ L   
Sbjct: 183 -------NLSLDMSLNPID-FIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVH 234

Query: 357 DLSRNMLNGSIPLSLGKISHLE--------YLDLSNNKMNGTLSEIHFVNLTKLTWFSAS 408
            L          L + + S +E           L+      +   + F  L  ++  S +
Sbjct: 235 RLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDF-SDDIVKFHCLANVSAMSLA 293

Query: 409 GNSLILQVNPNWVPPFQLKTLLLMSCHLGPQFPSWLHSQKNLSVLDISNARISDTIPRWF 468
           G S+  +   +    F+ ++L ++ C L       L     L  L ++  + S +  +  
Sbjct: 294 GVSI--KYLEDVPKHFKWQSLSIIRCQLKQFPTLDL---PFLKSLTLTMNKGSISFKKVA 348

Query: 469 WNSIF-------QLSGIIPESFKNF--SNLEVLNLGDNEFVGKIPTWMGEGFTSLLILIL 519
             S+         LS     S+ +   ++L  L+L  N  +     +MG     L  L  
Sbjct: 349 LPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMG--LEELQHLDF 406

Query: 520 RSNKFDGFLPIQ-LCRLTSLQILDVANNSLSGTMPGCVNNFSAMATIDSSHQSNAMSYFE 578
           + +             L  L  LD++  +      G     +++ T+  +   N+     
Sbjct: 407 QHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAG--NSFKDN- 463

Query: 579 VTAYDCEVLEDASIVMKGSMVEYNSILNL--VRIIDVSKNNFSGEIPMELTYLRGLQSLN 636
                                  N   N   +  +D+SK             L  LQ LN
Sbjct: 464 --------------------TLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLN 503

Query: 637 LSHNIFTGQIPENIGNLISIESLDFSTNQLSSKISQSMSSLSFLNHLNVSNNLLT 691
           +SHN        +   L S+ +LD S N++ +           L   N++NN + 
Sbjct: 504 MSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  204 bits (520), Expect = 9e-57
 Identities = 111/631 (17%), Positives = 202/631 (32%), Gaps = 99/631 (15%)

Query: 107 GNVNPSLVDLKHLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLS 166
           G++NP +  + ++T            ++P  + S  + + ++LS      +  +   N S
Sbjct: 2   GSLNPCIEVVPNIT-YQCMDQKLS--KVPDDIPS--STKNIDLSFNPLKILKSYSFSNFS 56

Query: 167 NLRCLDLSWSEYALQVHSFSWLSGQIPNRLGNLTSLRHLDLSANKFNSTTAGWLSKFNHL 226
            L+ LDLS  E          +          L  L +L L+ N   S + G  S    L
Sbjct: 57  ELQWLDLSRCE----------IETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSL 106

Query: 227 EFLSLSSNGLQGTISSIGLENLTSIKTIDLSLNFELGGPIPTSFVRLCELTSIDVSDVKL 286
           E L      L   + S  +  L ++K ++++ NF     +P  F  L  L  +D+S   +
Sbjct: 107 ENLVAVETKLAS-LESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYI 165

Query: 287 SQDLSQVLDILSACGASALESLVFSSSQISGHLTSQLGQFKSLRTLSLDDNCISGPLPP- 345
                  L  L         SL  S + I   +  Q  Q   L  L+L  N  S  +   
Sbjct: 166 QTITVNDLQFLRENPQV-NLSLDMSLNPID-FIQDQAFQGIKLHELTLRGNFNSSNIMKT 223

Query: 346 ALGDLSSLTRLDLSRNMLNGSIPLSLGKISHLE--------YLDLSNNKMNGTLSEIHFV 397
            L +L+ L    L          L + + S +E           L+      +   + F 
Sbjct: 224 CLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDF-SDDIVKFH 282

Query: 398 NLTKLTWFSASGNSLILQVNPNWVPPFQLKTLLLMSCHLGPQFPSWLHSQKNLSVLDISN 457
            L  ++  S +G S+  +   +    F+ ++L ++ C L       L     L  L ++ 
Sbjct: 283 CLANVSAMSLAGVSI--KYLEDVPKHFKWQSLSIIRCQLKQFPTLDL---PFLKSLTLTM 337

Query: 458 ARISDTIPRWFWNSIF-------QLSGIIPESFKNF--SNLEVLNLGDNEFVGKIPTWMG 508
            + S +  +    S+         LS     S+ +   ++L  L+L  N  +     +MG
Sbjct: 338 NKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMG 397

Query: 509 EGFTSLLILILRSNKFDGFLPIQ-LCRLTSLQILDVANNSLSGTMPGCVNNFSAMATIDS 567
                L  L  + +             L  L  LD++  +      G     +       
Sbjct: 398 --LEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLT------- 448

Query: 568 SHQSNAMSYFEVTAYDCEVLEDASIVMKGSMVEYNSILNLVRIIDVSKNNFSGEIPME-L 626
                                                 +L   + ++ N+F         
Sbjct: 449 --------------------------------------SL-NTLKMAGNSFKDNTLSNVF 469

Query: 627 TYLRGLQSLNLSHNIFTGQIPENIGNLISIESLDFSTNQLSSKISQSMSSLSFLNHLNVS 686
                L  L+LS              L  ++ L+ S N L    S   + L  L+ L+ S
Sbjct: 470 ANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCS 529

Query: 687 NNLLTGKIPSS----TQLQSFDASCFVGNNL 713
            N +             L  F+ +    N++
Sbjct: 530 FNRIETSKGILQHFPKSLAFFNLT---NNSV 557

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  178 bits (453), Expect = 1e-47
 Identities = 89/469 (18%), Positives = 161/469 (34%), Gaps = 50/469 (10%)

Query: 105 LSGNVNPSLVDLKHLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGN 164
           L+   +  +  L  L  L+++ N     ++P Y  +L NL +++LS      I  + L  
Sbjct: 116 LASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQF 175

Query: 165 LSNLRCLDLSWSEYALQVHSFSWLSG----QIPNRLGNLTSLRHLDLSANKFNST-TAGW 219
           L     ++LS             +S      I ++      L  L L  N  +S      
Sbjct: 176 LRENPQVNLSLD-----------MSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTC 224

Query: 220 LSKFNHLEFLSLSSNGLQG-----TISSIGLENLTSIKTIDLSLNF-ELGGPIPTSFVRL 273
           L     L    L     +            +E L  +   +  L +          F  L
Sbjct: 225 LQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCL 284

Query: 274 CELTSIDVSDVKLSQDLSQVLDILSACGASALESLVFSSSQISGHLTSQLGQFKSLRTLS 333
             ++++ ++ V +         +         +SL     Q+    T  L     L++L+
Sbjct: 285 ANVSAMSLAGVSIKY-------LEDVPKHFKWQSLSIIRCQLKQFPTLDL---PFLKSLT 334

Query: 334 LDDNCISGPLPPALGDLSSLTRLDLSRNMLN--GSIPLSLGKISHLEYLDLSNNKMNGTL 391
           L  N  S  +      L SL+ LDLSRN L+  G    S    + L +LDLS N     +
Sbjct: 335 LTMNKGS--ISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGA--II 390

Query: 392 SEIHFVNLTKLTWFSASGNSLI-LQVNPNWVPPFQLKTLLLMSCHLGPQFPSWLHSQKNL 450
              +F+ L +L       ++L  +     ++   +L  L +   +    F        +L
Sbjct: 391 MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSL 450

Query: 451 SVLDISNARISDTIPRWFWNSIF----------QLSGIIPESFKNFSNLEVLNLGDNEFV 500
           + L ++     D      + +            QL  I    F     L++LN+  N  +
Sbjct: 451 NTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLL 510

Query: 501 GKIPTWMGEGFTSLLILILRSNKFDGFLPIQLCRLTSLQILDVANNSLS 549
             + +       SL  L    N+ +    I      SL   ++ NNS++
Sbjct: 511 F-LDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  170 bits (433), Expect = 5e-45
 Identities = 100/551 (18%), Positives = 172/551 (31%), Gaps = 62/551 (11%)

Query: 191 QIPNRLGNLTSLRHLDLSANKFNSTTAGWLSKFNHLEFLSLSSNGLQGTISSIGLENLTS 250
           ++P+ +   +S +++DLS N      +   S F+ L++L LS   ++  I       L  
Sbjct: 25  KVPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIET-IEDKAWHGLHH 81

Query: 251 IKTIDLSLNFELGGPIPTSFVRLCELTSIDVSDVKLSQDLSQVLDILSACGASALESLVF 310
           +  + L+ N  +    P SF  L  L ++   + KL+   S  +          L+ L  
Sbjct: 82  LSNLILTGN-PIQSFSPGSFSGLTSLENLVAVETKLASLESFPI-----GQLITLKKLNV 135

Query: 311 SSSQISG-HLTSQLGQFKSLRTLSLDDNCISGPLPPALGDLSSLT----RLDLSRNMLNG 365
           + + I    L +      +L  + L  N I       L  L         LD+S N ++ 
Sbjct: 136 AHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPID- 194

Query: 366 SIPLSLGKISHLEYLDLSNNKMNGTLSEIHFVNLTKLTWFSASGNSLILQVNPNWVPP-- 423
            I     +   L  L L  N  +  + +    NL  L            + N     P  
Sbjct: 195 FIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSI 254

Query: 424 ------FQLKTLLLMSCHLGPQFPSWLHSQKNLSVLDISNARISDTIPRWFWNSIFQLS- 476
                   +    L   +         H   N+S + ++   I              LS 
Sbjct: 255 MEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSI 314

Query: 477 ---GIIPESFKNFSNLEVLNLGDNEFVGKIPTWMGEGFTSLLILILRSNKFDGFLPI--Q 531
               +      +   L+ L L  N+              SL  L L  N           
Sbjct: 315 IRCQLKQFPTLDLPFLKSLTLTMNKGSISFKKV---ALPSLSYLDLSRNALSFSGCCSYS 371

Query: 532 LCRLTSLQILDVANNSLSGTMPGCVNNFSAMATIDSSHQSNAMSYFEVTAYDCEVLEDAS 591
                SL+ LD++ N     M         +  +D                     + ++
Sbjct: 372 DLGTNSLRHLDLSFNGAI-IMSANFMGLEELQHLD--------------------FQHST 410

Query: 592 IVMKGSMVEYNSILNLVRIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQIPENI- 650
           +        + S+  L   +D+S  N   +       L  L +L ++ N F      N+ 
Sbjct: 411 LKRVTEFSAFLSLEKL-LYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVF 469

Query: 651 GNLISIESLDFSTNQLSSKISQSMSSLSFLNHLNVSNNLLTGKIPSS----TQLQSFDAS 706
            N  ++  LD S  QL         +L  L  LN+S+N L     S       L + D S
Sbjct: 470 ANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCS 529

Query: 707 CFVGNNLCGPP 717
               N +    
Sbjct: 530 ---FNRIETSK 537

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  130 bits (328), Expect = 1e-31
 Identities = 96/511 (18%), Positives = 156/511 (30%), Gaps = 78/511 (15%)

Query: 229 LSLSSNGLQGTISSIGLENLTSIKTIDLSLNFELGGPIPTSFVRLCELTSIDVSDVKLSQ 288
                  L      I     +S K IDLS N  L      SF    EL  +D        
Sbjct: 16  YQCMDQKLSKVPDDIP----SSTKNIDLSFNP-LKILKSYSFSNFSELQWLD-------- 62

Query: 289 DLSQVLDILSACGASALESLVFSSSQISGHLTSQLGQFKSLRTLSLDDNCISGPLPPALG 348
                   LS C    +E   +                  L  L L  N I    P +  
Sbjct: 63  --------LSRCEIETIEDKAWHG-------------LHHLSNLILTGNPIQSFSPGSFS 101

Query: 349 DLSSLTRLDLSRNMLNGSIPLSLGKISHLEYLDLSNNKMNGTLSEIHFVNLTKLTWFSAS 408
            L+SL  L      L       +G++  L+ L++++N ++      +F NLT L     S
Sbjct: 102 GLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLS 161

Query: 409 GNSLILQVNPNWVPPFQLKTLLLMSCHLG----PQFPSWLHSQKNLSVLDISNARISDTI 464
            N  I  +  N +   +    + +S  +                 L  L +     S  I
Sbjct: 162 YNY-IQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNI 220

Query: 465 PRWFWNSIFQLSGIIPESFKNFSNLEVLNLGDNEFVG-----KIPTWMGEGFTSLLILIL 519
                              +N + L V  L   EF            + EG   + I   
Sbjct: 221 M--------------KTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEF 266

Query: 520 RSNKFDGF--LPIQLCRLTSLQILDVANNSLSGTMPGCVNNFSAMATIDSSHQSNAMSYF 577
           R    + F    ++   L ++  + +A  S+               ++            
Sbjct: 267 RLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVP--KHFKWQSLSIIRCQLK---- 320

Query: 578 EVTAYDCEVLEDASIVM-KGSMVEYNSILNLVRIIDVSKNNFS--GEIPMELTYLRGLQS 634
           +    D   L+  ++ M KGS+      L  +  +D+S+N  S  G           L+ 
Sbjct: 321 QFPTLDLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRH 380

Query: 635 LNLSHNIFTGQIPENIGNLISIESLDFSTNQLSSKISQSM-SSLSFLNHLNVSNNLLTGK 693
           L+LS N     +  N   L  ++ LDF  + L      S   SL  L +L++S       
Sbjct: 381 LDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKID 439

Query: 694 IPSS----TQLQSFDASCFVGNNLCGPPLPS 720
                   T L +   +   GN+     L +
Sbjct: 440 FDGIFLGLTSLNTLKMA---GNSFKDNTLSN 467

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  129 bits (326), Expect = 2e-31
 Identities = 60/317 (18%), Positives = 111/317 (35%), Gaps = 29/317 (9%)

Query: 99  DYMRSMLSGNVNPSLVDLKHLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGII 158
               +    +       L +++ + L+G     I+  + +      + L++   +     
Sbjct: 267 RLTYTNDFSDDIVKFHCLANVSAMSLAGVS---IKYLEDVPKHFKWQSLSIIRCQLKQFP 323

Query: 159 PHQLGNLSNLRCLDLSWSEYALQVHSFSWLSGQIPNRLGNLTSLRHLDLSANKFNSTTAG 218
                +L  L+ L L+ +             G I  +   L SL +LDLS N  + +   
Sbjct: 324 T---LDLPFLKSLTLTMN------------KGSISFKKVALPSLSYLDLSRNALSFSGCC 368

Query: 219 --WLSKFNHLEFLSLSSNGLQGTISSIGLENLTSIKTIDLSLNFELGGPIPTSFVRLCEL 276
                  N L  L LS NG    I S     L  ++ +D   +        ++F+ L +L
Sbjct: 369 SYSDLGTNSLRHLDLSFNGA--IIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKL 426

Query: 277 TSIDVSDVKLSQDLSQVLDILSACGASALESLVFSSSQISGHLTSQ-LGQFKSLRTLSLD 335
             +D+S      D   +       G ++L +L  + +    +  S       +L  L L 
Sbjct: 427 LYLDISYTNTKIDFDGIF-----LGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLS 481

Query: 336 DNCISGPLPPALGDLSSLTRLDLSRNMLNGSIPLSLGKISHLEYLDLSNNKMNGTLSEIH 395
              +          L  L  L++S N L         ++  L  LD S N++  T   I 
Sbjct: 482 KCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGIL 540

Query: 396 FVNLTKLTWFSASGNSL 412
                 L +F+ + NS+
Sbjct: 541 QHFPKSLAFFNLTNNSV 557

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  207 bits (528), Expect = 2e-56
 Identities = 96/709 (13%), Positives = 177/709 (24%), Gaps = 153/709 (21%)

Query: 27  SDVGCTDSEREALLKLKQDLKDPSNR-----------LGSWVVDGDCCKWAEVVCSNLT- 74
            +      + +AL  + + L   + R             +W  + +   W +    +L  
Sbjct: 262 KETAEYIKDYKALKAIWEALDGKNWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDN 321

Query: 75  -GHVLQLSLRNPFRNDLRYATTEYEDYMRSMLSGNVNPSLVDLKHLTHLDLSGNDFQGIR 133
            G V  LSL                        G V  ++  L  L  L    +      
Sbjct: 322 NGRVTGLSLAG---FGA---------------KGRVPDAIGQLTELKVLSFGTHSETVSG 363

Query: 134 IPKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRCLDLSW------------------ 175
                  L                    L     L   DL                    
Sbjct: 364 RLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRI 423

Query: 176 SEYALQVHSFSWLSGQIPNRLGNLTSLRHLDLSANKFNSTTAGWLSKFNHLEFLSLSSNG 235
           S    Q+ + +     I   +  LT L+ +  + + F        +     E  +     
Sbjct: 424 SLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTY-----DNIAVDWEDANSDYAK 478

Query: 236 LQGTISSIGLENLTSIKTIDLSLNFELGGPIPTSFVRLCELTSIDVSDVKLSQDLSQVLD 295
                      NL  +  ++L     +   +P     L EL S++++  +         D
Sbjct: 479 QYENEEL-SWSNLKDLTDVELYNCPNM-TQLPDFLYDLPELQSLNIACNRGISAAQLKAD 536

Query: 296 IL----SACGASALESLVFSSSQISG-HLTSQLGQFKSLRTLSLDDNCISGPLPPALGDL 350
                        ++      + +     ++ L +   L  L    N +      A G  
Sbjct: 537 WTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRH--LEAFGTN 594

Query: 351 SSLTRLDLSRNMLNGSIPLSLGK-ISHLEYLDLSNNKMNGTLSEIHFVNLTKLTWFSASG 409
             LT L L  N +   IP         +E L  S+NK+    +  +  ++  +     S 
Sbjct: 595 VKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSY 653

Query: 410 NSLILQVNPNWVPPFQLKTLLLMSCHLGPQFPSWLHSQKNLSVLDISNARISDTIPRWFW 469
           N  I     N          +                  N S + +S             
Sbjct: 654 NK-IGSEGRNISCSMDDYKGI------------------NASTVTLSYN----------- 683

Query: 470 NSIFQLSGIIPESFKNFSNLEVLNLGDNEFVGKIPTWMGEGF-------TSLLILILRSN 522
               ++     E F   S +  + L +N     IP    +           L  + LR N
Sbjct: 684 ----EIQKFPTELFATGSPISTIILSNNLM-TSIPENSLKPKDGNYKNTYLLTTIDLRFN 738

Query: 523 KFDGFLP-IQLCRLTSLQILDVANNSLSGTMPGCVNNFSAMATIDSSHQSNAMSYFEVTA 581
           K        +   L  L  +DV+ N  S                           F    
Sbjct: 739 KLTSLSDDFRATTLPYLSNMDVSYNCFSS--------------------------FPTQP 772

Query: 582 YDCEVLEDASIVMKGSMVEYNSILNLVRIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNI 641
            +   L+                  +    D   N    + P  +T    L  L +  N 
Sbjct: 773 LNSSQLK---------------AFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSND 817

Query: 642 FTGQIPENIGNLISIESLDFSTNQLSS-KISQSMSSLSFLNHLNVSNNL 689
               + E +     +  LD + N   S  ++     +    ++ + +  
Sbjct: 818 IRK-VDEKL--TPQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKT 863

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  185 bits (470), Expect = 7e-49
 Identities = 74/572 (12%), Positives = 160/572 (27%), Gaps = 121/572 (21%)

Query: 156 GIIPHQLGNLSNLRCLDLSWSEYALQVHSFSWLSGQIPNRLGNLTSLRHLDLSANKFNST 215
                 L N   +  L L+               G++P+ +G LT L+ L    +    +
Sbjct: 313 DQPGVDLDNNGRVTGLSLAGFG----------AKGRVPDAIGQLTELKVLSFGTHSETVS 362

Query: 216 TAGWLSKFNHLEFLSLSSNGLQGTISSIGLENLTSIKTIDLSLNFELGGPIPTSFVRLCE 275
              +  +    +      + ++     + L+    +   DL  +     P      +   
Sbjct: 363 GRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSR 422

Query: 276 LTSIDVSDVKLSQDLSQVLDILSACGASALESLVFSSSQISGHLTSQLGQFKSLRTLSLD 335
           ++  D     L+  ++ +   +     + L+ + F++S  +                + D
Sbjct: 423 ISLKDTQIGNLTNRITFISKAIQRL--TKLQIIYFANSPFTY-----DNIAVDWEDANSD 475

Query: 336 DNCISGPLPPALGDLSSLTRLDLSRNMLNGSIPLSLGKISHLEYLDLSNNKMNGTLSEIH 395
                     +  +L  LT ++L        +P  L  +  L+ L+++ N+         
Sbjct: 476 YAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKA 535

Query: 396 --------FVNLTKLTWFSASGNSLILQVNPNWVPPFQLKTLLLMSCHLGPQFPSWLHSQ 447
                        K+  F    N+L         P                   + L   
Sbjct: 536 DWTRLADDEDTGPKIQIFYMGYNNL------EEFPA-----------------SASLQKM 572

Query: 448 KNLSVLDISNARISDTIPRWFWNSIFQLSGIIPESFKNFSNLEVLNLGDNEFVGKIPTWM 507
             L +LD  + ++                    E+F     L  L L  N+    IP   
Sbjct: 573 VKLGLLDCVHNKVR-----------------HLEAFGTNVKLTDLKLDYNQIEE-IPEDF 614

Query: 508 GEGFTSLLILILRSNKFDGFLP-IQLCRLTSLQILDVANNSLSGTMPGCVNNFSAMATID 566
                 +  L    NK            +  +  +D + N +         +        
Sbjct: 615 CAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDY---- 670

Query: 567 SSHQSNAMSYFEVTAYDCEVLEDASIVMKGSMVEYNSILNLVRIIDVSKNNFSGEIPMEL 626
                                                 +N    + +S N          
Sbjct: 671 ------------------------------------KGINAST-VTLSYNEIQKFPTELF 693

Query: 627 TYLRGLQSLNLSHNIFT-------GQIPENIGNLISIESLDFSTNQLSSKISQ-SMSSLS 678
                + ++ LS+N+ T            N  N   + ++D   N+L+S       ++L 
Sbjct: 694 ATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLP 753

Query: 679 FLNHLNVSNNLLTGKIPSS----TQLQSFDAS 706
           +L++++VS N  +   P+     +QL++F   
Sbjct: 754 YLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIR 784

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  183 bits (466), Expect = 2e-48
 Identities = 63/470 (13%), Positives = 134/470 (28%), Gaps = 78/470 (16%)

Query: 111 PSLVDLKHLTHLDLSGNDFQGI------------------RIPKYLGSLKNLRYLNLSGA 152
            ++  L  L  +  + + F                            +LK+L  + L   
Sbjct: 442 KAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNC 501

Query: 153 EFAGIIPHQLGNLSNLRCLDLSWSEYALQVHSFSWLSGQIPNRLGNLTSLRHLDLSANKF 212
                +P  L +L  L+ L+++     +          ++ +       ++   +  N  
Sbjct: 502 PNMTQLPDFLYDLPELQSLNIA-CNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNL 560

Query: 213 NSTTAGW-LSKFNHLEFLSLSSNGLQGTISSIGLENLTSIKTIDLSLNFELGGPIPTSFV 271
               A   L K   L  L    N ++  + + G      +  + L  N ++         
Sbjct: 561 EEFPASASLQKMVKLGLLDCVHNKVR-HLEAFG--TNVKLTDLKLDYN-QIEEIPEDFCA 616

Query: 272 RLCELTSIDVSDVKLSQDLSQVLDILSACGASALESLVFSSSQISGHLTSQLG-----QF 326
              ++  +  S  K    L  + +I +A     + S+ FS ++I     +        + 
Sbjct: 617 FTDQVEGLGFSHNK----LKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKG 672

Query: 327 KSLRTLSLDDNCISGPLPPALGDLSSLTRLDLSRNML-------NGSIPLSLGKISHLEY 379
            +  T++L  N I           S ++ + LS N++             +      L  
Sbjct: 673 INASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTT 732

Query: 380 LDLSNNKMNGTLSEIHFVNLTKLTWFSASGNSLILQVNPNWVPPFQLKTLLLMSCHLGPQ 439
           +DL  NK+     +     L  L+    S N                 +           
Sbjct: 733 IDLRFNKLTSLSDDFRATTLPYLSNMDVSYN--------------CFSSF---------- 768

Query: 440 FPSWLHSQKNLSVLDISNARISDTIPRWFWNSIFQLSGIIPESFKNFSNLEVLNLGDNEF 499
            P+   +   L    I + R +            ++    P       +L  L +G N+ 
Sbjct: 769 -PTQPLNSSQLKAFGIRHQRDA---------EGNRILRQWPTGITTCPSLIQLQIGSNDI 818

Query: 500 VGKIPTWMGEGFTSLLILILRSNKFDGFLPIQLCRLTSLQILDVANNSLS 549
             K+   +      L IL +  N         +C      +  +  +   
Sbjct: 819 -RKVDEKL---TPQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQ 864

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  150 bits (380), Expect = 1e-37
 Identities = 66/435 (15%), Positives = 132/435 (30%), Gaps = 68/435 (15%)

Query: 313 SQISGHLTSQLGQFKSLRTLSLDDNCISGPLPPALGDLSSLTRLDLSRNMLNGSIPLSLG 372
                     L     +  LSL      G +P A+G L+ L  L    +    S  L   
Sbjct: 309 DMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGD 368

Query: 373 KISHLEYLDLSNNKMNGTLSEIHFVNLTKLTWFSASGNSLILQVNPNWVPPFQLKTLLLM 432
           +    +  +   +++     ++      +L       +++    NP   P  +   + L 
Sbjct: 369 EELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINR--NPEMKPIKKDSRISLK 426

Query: 433 SCHLGPQF------PSWLHSQKNLSVLDISNARISDTIPRWFWNSI----FQLSGIIPES 482
              +G            +     L ++  +N+  +       W        +       S
Sbjct: 427 DTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELS 486

Query: 483 FKNFSNLEVLNLGDNEFVGKIPTWMGEGFTSLLILILRSNKFDGF---------LPIQLC 533
           + N  +L  + L +   + ++P ++      L  L +  N+             L     
Sbjct: 487 WSNLKDLTDVELYNCPNMTQLPDFLY-DLPELQSLNIACNRGISAAQLKADWTRLADDED 545

Query: 534 RLTSLQILDVANNSLSGTMPGCV-NNFSAMATIDSSHQSNAMSYFEVTAYDCEVLEDASI 592
               +QI  +  N+L              +  +D  H  N + + E              
Sbjct: 546 TGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVH--NKVRHLE-------------- 589

Query: 593 VMKGSMVEYNSILNLV--RIIDVSKNNFSGEIPMEL-TYLRGLQSLNLSHNIFTGQIPE- 648
                     +    V    + +  N    EIP +   +   ++ L  SHN     IP  
Sbjct: 590 ----------AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKY-IPNI 637

Query: 649 -NIGNLISIESLDFSTNQLSS---KISQSMSSLSFLN--HLNVSNNLLTGKIPSS----T 698
            N  ++  + S+DFS N++ S    IS SM     +N   + +S N +           +
Sbjct: 638 FNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGS 697

Query: 699 QLQSFDASCFVGNNL 713
            + +   S    N +
Sbjct: 698 PISTIILS---NNLM 709

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  165 bits (420), Expect = 1e-43
 Identities = 116/602 (19%), Positives = 193/602 (32%), Gaps = 121/602 (20%)

Query: 118 HLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRCLDLSWSE 177
              +LDLS N  + +       S   L+ L+LS  E   I      +LS+L  L L+ + 
Sbjct: 29  STKNLDLSFNPLRHLG-SYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87

Query: 178 YALQVHSFSWLSGQIPNRLGNLTSLRHLDLSANKFNSTTAGWLSKFNHLEFLSLSSNGLQ 237
                     +          L+SL+ L        S     +     L+ L+++ N +Q
Sbjct: 88  ----------IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQ 137

Query: 238 GTISSIGLENLTSIKTIDLSLNFELGGPIPTSFVRLCELTSIDVSDVKLSQDLSQVLDIL 297
                    NLT+++ +DLS N  +     T    L ++  +++S           LD L
Sbjct: 138 SFKLPEYFSNLTNLEHLDLSSNK-IQSIYCTDLRVLHQMPLLNLS-----------LD-L 184

Query: 298 SACGASALESLVFSSSQISGHLTSQLGQFKSLRTLSLDDNCISGPLPP-ALGDLSSLTRL 356
           S    + ++   F                  L  L+L +N  S  +    +  L+ L   
Sbjct: 185 SLNPMNFIQPGAFKE--------------IRLHKLTLRNNFDSLNVMKTCIQGLAGLEVH 230

Query: 357 DLSRNMLNGSIPLSLGKISHLE--------YLDLSNNKMNGTLSEIHFVNLTKLTWFSAS 408
            L          L     S LE           L+            F  LT ++ FS  
Sbjct: 231 RLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLV 290

Query: 409 GNSLILQVNPNWVPPFQLKTLLLMSCHLGPQFPSWLHSQKNLSVLDISNARISDTIPRWF 468
             +  ++   ++   F  + L L++C    QFP+     K+L  L  ++ +  +      
Sbjct: 291 SVT--IERVKDFSYNFGWQHLELVNCKF-GQFPT--LKLKSLKRLTFTSNKGGNAF---- 341

Query: 469 WNSIFQLSGIIPESFKNFSNLEVLNLGDNEFVGK-IPTWMGEGFTSLLILILRSNKFDGF 527
                        S  +  +LE L+L  N    K   +    G TSL  L L  N     
Sbjct: 342 -------------SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-T 387

Query: 528 LPIQLCRLTSLQILDVANNSLSGTMPGCVNNFSAMATIDSSHQSNAMSYFEVTAYDCEVL 587
           +      L  L+ LD  +++L       V                               
Sbjct: 388 MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLS---------------------------- 419

Query: 588 EDASIVMKGSMVEYNSILNLVRIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQIP 647
                            L  +  +D+S  +           L  L+ L ++ N F     
Sbjct: 420 -----------------LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFL 462

Query: 648 ENI-GNLISIESLDFSTNQLSSKISQSMSSLSFLNHLNVSNNLLT----GKIPSSTQLQS 702
            +I   L ++  LD S  QL      + +SLS L  LN+++N L     G     T LQ 
Sbjct: 463 PDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQK 522

Query: 703 FD 704
             
Sbjct: 523 IW 524

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  157 bits (399), Expect = 7e-41
 Identities = 99/475 (20%), Positives = 161/475 (33%), Gaps = 47/475 (9%)

Query: 110 NPSLVDLKHLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLR 169
           + S      L  LDLS  + Q I       SL +L  L L+G     +       LS+L+
Sbjct: 45  SYSFFSFPELQVLDLSRCEIQTI-EDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQ 103

Query: 170 CLDLSWSE-YALQVHSFSWL--------------SGQIPNRLGNLTSLRHLDLSANKFNS 214
            L    +   +L+      L              S ++P    NLT+L HLDLS+NK  S
Sbjct: 104 KLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 163

Query: 215 TTAGWLSKFNHLEF----LSLSSNGLQGTISSIGLENLTSIKTIDLSLNFELGGPIPTSF 270
                L   + +      L LS N +   I     + +  +  + L  NF+    + T  
Sbjct: 164 IYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCI 221

Query: 271 VRLCELTSIDVSDVKL-SQDLSQVLDILSACGASALESLVFSSSQISGHLTSQLGQF--- 326
             L  L    +   +  ++   +  D  +  G   L    F  + +  +L   +  F   
Sbjct: 222 QGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCL 281

Query: 327 KSLRTLSLDDNCISGPLPPALGDLSSLTRLDLSRNMLNGSIPLSLGKISHLEYLDLSNNK 386
            ++ + SL    I                L+L          L L     L+ L  ++NK
Sbjct: 282 TNVSSFSLVSVTIER--VKDFSYNFGWQHLELVNCKFGQFPTLKL---KSLKRLTFTSNK 336

Query: 387 MNGTLSEIHFVNLTKLTWFSASGNSLILQVNPN--WVPPFQLKTLLLMSCHLGPQFPSWL 444
                S    V+L  L +   S N L  +   +        LK L L    +     S  
Sbjct: 337 GGNAFS---EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNF 392

Query: 445 HSQKNLSVLDISNARISDTIPRWFWNSIF----------QLSGIIPESFKNFSNLEVLNL 494
              + L  LD  ++ +        + S+                    F   S+LEVL +
Sbjct: 393 LGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKM 452

Query: 495 GDNEFVGKIPTWMGEGFTSLLILILRSNKFDGFLPIQLCRLTSLQILDVANNSLS 549
             N F       +     +L  L L   + +   P     L+SLQ+L++A+N L 
Sbjct: 453 AGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLK 507

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  120 bits (302), Expect = 1e-28
 Identities = 73/403 (18%), Positives = 127/403 (31%), Gaps = 64/403 (15%)

Query: 105 LSGN----VNPSLVDLKHLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAG---I 157
           LS N    + P       L  L L  N      +   +  L  L    L   EF     +
Sbjct: 184 LSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNL 243

Query: 158 IPHQLGNLSNLRCLDLSWSEYALQVHSFSWLSGQIPNRLGNLTSLRHLDLSANKFNSTTA 217
                  L  L  L +       ++    +    I +    LT++    L +        
Sbjct: 244 EKFDKSALEGLCNLTIEE----FRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD 299

Query: 218 GWLSKFNHLEFLSLSSNGLQGTISSIGLENLTSIKTIDLSLNFELGGPIPTSFVRLCELT 277
              S     + L L +        ++ L++L   K +  + N         S V L  L 
Sbjct: 300 F--SYNFGWQHLELVNCKFGQ-FPTLKLKSL---KRLTFTSNKGGNAF---SEVDLPSLE 350

Query: 278 SIDVSDVKLSQDLSQVLDILSACGASALESLVFSSSQISGHLTSQLGQFKSLRTLSLDDN 337
            +D+S   LS    +     S  G ++L+ L  S + +   ++S     + L  L    +
Sbjct: 351 FLDLSRNGLS---FKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHS 406

Query: 338 CISG-PLPPALGDLSSLTRLDLSRNMLNGSIPLSLGKISHLEYLDLSNNKMNGTLSEIHF 396
            +           L +L  LD+S      +       +S LE L ++ N          F
Sbjct: 407 NLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIF 466

Query: 397 VNLTKLTWFSASGNSLILQVNPNWVPPFQLKTLLLMSCHLGPQFPSWLHSQKNLSVLDIS 456
             L  LT+   S                QL+ L           P+  +S  +L VL+++
Sbjct: 467 TELRNLTFLDLSQC--------------QLEQL----------SPTAFNSLSSLQVLNMA 502

Query: 457 NARISDTIPRWFWNSIFQLSGIIPESFKNFSNLEVLNLGDNEF 499
           +            N   QL  +    F   ++L+ + L  N +
Sbjct: 503 S------------N---QLKSVPDGIFDRLTSLQKIWLHTNPW 530

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  114 bits (286), Expect = 2e-26
 Identities = 101/517 (19%), Positives = 155/517 (29%), Gaps = 93/517 (17%)

Query: 231 LSSNGLQGTISSIGLENLTSIKTIDLSLNFELGGPIPTSFVRLCELTSIDVSDVKLSQDL 290
                       I      S K +DLS N  L      SF    EL  +D          
Sbjct: 14  CMELNF----YKIPDNLPFSTKNLDLSFNP-LRHLGSYSFFSFPELQVLD---------- 58

Query: 291 SQVLDILSACGASALESLVFSSSQISGHLTSQLGQFKSLRTLSLDDNCISGPLPPALGDL 350
                 LS C    +E   +                  L TL L  N I      A   L
Sbjct: 59  ------LSRCEIQTIEDGAYQ-------------SLSHLSTLILTGNPIQSLALGAFSGL 99

Query: 351 SSLTRLDLSRNMLNGSIPLSLGKISHLEYLDLSNNKMNGTLSEIHFVNLTKLTWFSASGN 410
           SSL +L      L       +G +  L+ L++++N +       +F NLT L     S N
Sbjct: 100 SSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN 159

Query: 411 SLILQVNPNWVPPFQLKTLLLMSCHLG----PQFPSWLHSQKNLSVLDISNARISDTIPR 466
             I  +    +       LL +S  L              +  L  L + N   S  +  
Sbjct: 160 K-IQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVM- 217

Query: 467 WFWNSIFQLSGIIPESFKNFSNLEVLNLGDNEFVG-----KIPTWMGEGFTSLLILILRS 521
                            +  + LEV  L   EF       K      EG  +L I   R 
Sbjct: 218 -------------KTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRL 264

Query: 522 NKFDGF---LPIQLCRLTSLQILDVANNSLSGTMPGCVNNFSAMATIDSSHQSNAMSYFE 578
              D +   +      LT++    + + ++       V +FS           N   + +
Sbjct: 265 AYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER-----VKDFSYNFGWQHLELVN-CKFGQ 318

Query: 579 VTAYDCEVLEDASIVMKGSMVEYNSILNL--------VRIIDVSKN--NFSGEIPMELTY 628
                 + L       K      N   N         +  +D+S+N  +F G        
Sbjct: 319 FPTLKLKSL-------KRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFG 371

Query: 629 LRGLQSLNLSHNIFTGQIPENIGNLISIESLDFSTNQLSSKISQSM-SSLSFLNHLNVSN 687
              L+ L+LS N     +  N   L  +E LDF  + L      S+  SL  L +L++S+
Sbjct: 372 TTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISH 430

Query: 688 NLLTGKIPSS----TQLQSFDASCFVGNNLCGPPLPS 720
                         + L+    +   GN+     LP 
Sbjct: 431 THTRVAFNGIFNGLSSLEVLKMA---GNSFQENFLPD 464

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  107 bits (270), Expect = 1e-24
 Identities = 57/304 (18%), Positives = 111/304 (36%), Gaps = 18/304 (5%)

Query: 103 SMLSGNVNPSLVDLKHLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIP-HQ 161
                +    L +L  +    L+  D+    I      L N+   +L       +     
Sbjct: 244 EKFDKSALEGLCNL-TIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSY 302

Query: 162 LGNLSNLRCLDLSWSE------YALQVHSFSWLSGQIPNRLGNLTSLRHLDLSANKFN-- 213
                +L  ++  + +       +L+  +F+   G       +L SL  LDLS N  +  
Sbjct: 303 NFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFK 362

Query: 214 STTAGWLSKFNHLEFLSLSSNGLQGTISSIGLENLTSIKTIDLSLNFELGGPIPTSFVRL 273
              +        L++L LS NG+  T+SS     L  ++ +D   +        + F+ L
Sbjct: 363 GCCSQSDFGTTSLKYLDLSFNGVI-TMSS-NFLGLEQLEHLDFQHSNLKQMSEFSVFLSL 420

Query: 274 CELTSIDVSDVKLSQDLSQVLDILSACGASALESLVFSSSQISGHLTSQ-LGQFKSLRTL 332
             L  +D+S        + + + LS+     LE L  + +    +       + ++L  L
Sbjct: 421 RNLIYLDISHTHTRVAFNGIFNGLSS-----LEVLKMAGNSFQENFLPDIFTELRNLTFL 475

Query: 333 SLDDNCISGPLPPALGDLSSLTRLDLSRNMLNGSIPLSLGKISHLEYLDLSNNKMNGTLS 392
            L    +    P A   LSSL  L+++ N L         +++ L+ + L  N  + +  
Sbjct: 476 DLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 535

Query: 393 EIHF 396
            I +
Sbjct: 536 RIDY 539

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  167 bits (425), Expect = 3e-43
 Identities = 121/685 (17%), Positives = 228/685 (33%), Gaps = 95/685 (13%)

Query: 112 SLVDLKHLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRCL 171
           S   L+ L  L+L           +   +L NLR L+L  ++   + P     L +L  L
Sbjct: 43  SFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFEL 102

Query: 172 DLSW---SEYALQVHSFSWLSGQIPNRLGNLTSLRHLDLSANKFNSTTAGW-LSKFNHLE 227
            L +   S+  L+   F            NL +L  LDLS N+  S        K N L+
Sbjct: 103 RLYFCGLSDAVLKDGYFR-----------NLKALTRLDLSKNQIRSLYLHPSFGKLNSLK 151

Query: 228 FLSLSSNGLQGTISSIGLENLT--SIKTIDLSLNFELGGPIPTSFVRLCE------LTSI 279
            +  SSN +   +    LE L   ++    L+ N  L   +   + +         L  +
Sbjct: 152 SIDFSSNQIF-LVCEHELEPLQGKTLSFFSLAANS-LYSRVSVDWGKCMNPFRNMVLEIL 209

Query: 280 DVSDVKLSQDLSQVLDILSACGASALESLVFSSSQISGHLTSQLGQFKSLRTLSLDDNCI 339
           DVS    + D++                    S+ IS      L     +       + I
Sbjct: 210 DVSGNGWTVDITGNF-----------------SNAISKSQAFSLILAHHIMGAGFGFHNI 252

Query: 340 SGPLPPALGDL--SSLTRLDLSRNMLNGSIPLSLGKISHLEYLDLSNNKMNGTLSEIHFV 397
             P       L  SS+  LDLS   +          +  L+ L+L+ NK+N  +++  F 
Sbjct: 253 KDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKIN-KIADEAFY 311

Query: 398 NLTKLTWFSASGNSLILQVNPNWVPPF-QLKTLLLMSCHLGPQFPSWLHSQKNLSVLDIS 456
            L  L   + S N  + ++  +      ++  + L   H+           + L  LD+ 
Sbjct: 312 GLDNLQVLNLSYNL-LGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLR 370

Query: 457 NARISDTIPRWFWNSIFQLSGIIPESFKNFSNLEVLNLGDNEFVGKIPTWMGEGFTSLLI 516
           +  ++          IF     +    K      +++L +N        +       L I
Sbjct: 371 DNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQI 430

Query: 517 LILRSNKFDGFLPIQLCR-LTSLQILDVANNSLSGTMPGCVNNFSAMATIDSSHQSNAMS 575
           LIL  N+F      Q      SL+ L +  N L       +                   
Sbjct: 431 LILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCW----------------- 473

Query: 576 YFEVTAYDCEVLEDASIVMKGSMVEYNSILNLVRIIDVSKNNFSGEIPMELTYLRGLQSL 635
                    +V E                L+ ++++ ++ N  +   P   ++L  L+ L
Sbjct: 474 ---------DVFEG---------------LSHLQVLYLNHNYLNSLPPGVFSHLTALRGL 509

Query: 636 NLSHNIFTGQIPENIGNLISIESLDFSTNQLSSKISQSMSSLSFLNHLNVSNNLLTGKIP 695
           +L+ N  T  +  N     ++E LD S NQL    + +      L+ L++++N    +  
Sbjct: 510 SLNSNRLT-VLSHND-LPANLEILDISRNQLL---APNPDVFVSLSVLDITHNKFICECE 564

Query: 696 SSTQLQSFDAS-CFVGNNLCGPPLPSCTENNARAPKDPNGNAEQDEDEVDWLLYVSIAVG 754
            ST +   + +   +               +  +    +     +E+ +  L +    V 
Sbjct: 565 LSTFINWLNHTNVTIAGPPADIYCVYPDSFSGVSLFSLSTEGCDEEEVLKSLKFSLFIVC 624

Query: 755 FVVGFWCFIGPLLLNRGWRYKYCRF 779
            V      +  L + +   + +  +
Sbjct: 625 TVTLTLFLMTILTVTKFRGFCFICY 649

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  150 bits (380), Expect = 1e-37
 Identities = 110/544 (20%), Positives = 182/544 (33%), Gaps = 77/544 (14%)

Query: 198 NLTSLRHLDLSANKFNSTTAGWLSKFNHLEFLSLSSNGLQGTISSIGLENLTSIKTIDLS 257
            L +   L LS N   + TA        L+ L L S     TI      NL +++ +DL 
Sbjct: 22  VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLG 81

Query: 258 LNFELGGPIPTSFVRLCELTSIDVSDVKLSQDLSQVLDILSACGASALESLVFSSSQISG 317
            + ++    P +F  L  L  + +    LS     VL         AL  L  S +QI  
Sbjct: 82  SS-KIYFLHPDAFQGLFHLFELRLYFCGLS---DAVLKDGYFRNLKALTRLDLSKNQIRS 137

Query: 318 -HLTSQLGQFKSLRTLSLDDNCISGPLPPALGDLS--SLTRLDLSRNMLNGSIPLSLGKI 374
            +L    G+  SL+++    N I       L  L   +L+   L+ N L   + +  GK 
Sbjct: 138 LYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKC 197

Query: 375 S------HLEYLDLSNNKMNGTLSEIHFVNLTKLTWFSASGNSLILQVNPNWVPPFQLKT 428
                   LE LD+S N     ++      ++K   FS                   +  
Sbjct: 198 MNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAH-------------HIMG 244

Query: 429 LLLMSCHLGPQFPSWLHSQKNLSV--LDISNARISDTIPRWFWNSIFQLSGIIPESFKNF 486
                 ++     +        SV  LD+S+              +F L+      F+  
Sbjct: 245 AGFGFHNIKDPDQNTFAGLARSSVRHLDLSH------------GFVFSLN---SRVFETL 289

Query: 487 SNLEVLNLGDNEFVGKIPTWMGEGFTSLLILILRSNKFDGFLPIQLCRLTSLQILDVANN 546
            +L+VLNL  N+   KI      G  +L +L L  N            L  +  +D+  N
Sbjct: 290 KDLKVLNLAYNKIN-KIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKN 348

Query: 547 SLSGTMPGCVNNFSAMATIDSSHQSNAMSYFEVTAYDCEVLEDASIVMKGSMVEYNSILN 606
            ++            + T+D     NA++         ++            +  N ++ 
Sbjct: 349 HIAIIQDQTFKFLEKLQTLDLRD--NALTTIHFIPSIPDI-----------FLSGNKLVT 395

Query: 607 LV------RIIDVSKNNFSG-EIPMELTYLRGLQSLNLSHNIFTGQIPENI-GNLISIES 658
           L        +I +S+N     +I   L  +  LQ L L+ N F+    +       S+E 
Sbjct: 396 LPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQ 455

Query: 659 LDFSTNQLSSKISQSMSSLSF-----LNHLNVSNNLLT----GKIPSSTQLQSFDASCFV 709
           L    N L       +    F     L  L +++N L     G     T L+    +   
Sbjct: 456 LFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLN--- 512

Query: 710 GNNL 713
            N L
Sbjct: 513 SNRL 516

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  127 bits (321), Expect = 2e-30
 Identities = 77/401 (19%), Positives = 144/401 (35%), Gaps = 41/401 (10%)

Query: 94  TTEYEDYMRSMLSGNVNPSLVDLKHLTHLDLSGNDFQGIRIPKYLGSLK--NLRYLNLSG 151
           T +      + +S +   SL+   H+       ++ +          L   ++R+L+LS 
Sbjct: 217 TVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPD-QNTFAGLARSSVRHLDLSH 275

Query: 152 AEFAGIIPHQLGNLSNLRCLDLSWSEYALQVHSFSWLSGQIPNRLGNLTSLRHLDLSANK 211
                +       L +L+ L+L++++          ++         L +L+ L+LS N 
Sbjct: 276 GFVFSLNSRVFETLKDLKVLNLAYNK----------INKIADEAFYGLDNLQVLNLSYNL 325

Query: 212 FNSTTAGWLSKFNHLEFLSLSSNGLQGTISSIGLENLTSIKTIDLSLNFELGGPIPTSFV 271
                +        + ++ L  N +   I     + L  ++T+DL  N      + T+  
Sbjct: 326 LGELYSSNFYGLPKVAYIDLQKNHIA-IIQDQTFKFLEKLQTLDLRDN-----AL-TTIH 378

Query: 272 RLCELTSIDVSDVKLSQDLSQVLDILSACGASALESLVFSSSQISG-HLTSQLGQFKSLR 330
            +  +  I +S  KL       L             +  S +++    +   L +   L+
Sbjct: 379 FIPSIPDIFLSGNKLVTLPKINL---------TANLIHLSENRLENLDILYFLLRVPHLQ 429

Query: 331 TLSLDDNCISGPLPPAL-GDLSSLTRLDLSRNMLNGSIPLSL-----GKISHLEYLDLSN 384
            L L+ N  S         +  SL +L L  NML  +    L       +SHL+ L L++
Sbjct: 430 ILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNH 489

Query: 385 NKMNGTLSEIHFVNLTKLTWFSASGNSLILQVNPNWVPPFQLKTLLLMSCHLGPQFPSWL 444
           N +N +L    F +LT L   S + N   L V  +   P  L+ L +    L    P   
Sbjct: 490 NYLN-SLPPGVFSHLTALRGLSLNSNR--LTVLSHNDLPANLEILDISRNQLLAPNPDVF 546

Query: 445 HSQKNLSVLDISNARISDTIPRWFWNSIFQLSGIIPESFKN 485
            S   L +    N  I +     F N +   +  I     +
Sbjct: 547 VSLSVLDITH--NKFICECELSTFINWLNHTNVTIAGPPAD 585

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  156 bits (397), Expect = 3e-41
 Identities = 107/452 (23%), Positives = 172/452 (38%), Gaps = 66/452 (14%)

Query: 111 PSLVDLKHLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRC 170
            S  DL  +T L        GI+    +  L NL  +N S  +   I P  L NL+ L  
Sbjct: 40  VSQTDLDQVTTLQADRL---GIKSIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVD 94

Query: 171 LDLSWSEYALQVHSFSWLSGQIPNRLGNLTSLRHLDLSANKFNSTTAGWLSKFNHLEFLS 230
           + ++ ++          ++   P  L NLT+L  L L  N+        L    +L  L 
Sbjct: 95  ILMNNNQ----------IADITP--LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLE 140

Query: 231 LSSNGLQGTISSIGLENLTSIKTIDLSLNFELGGPIPTSFVRLCELTSIDVSDVKLSQDL 290
           LSSN +    +   L  LTS++ +                  L  L  +D+S  K+S   
Sbjct: 141 LSSNTISDISA---LSGLTSLQQLSFGNQVT----DLKPLANLTTLERLDISSNKVSD-- 191

Query: 291 SQVLDILSACGASALESLVFSSSQISGHLTSQLGQFKSLRTLSLDDNCISGPLPPALGDL 350
              + +L+    + LESL+ +++QIS    + LG   +L  LSL+ N +       L  L
Sbjct: 192 ---ISVLAKL--TNLESLIATNNQISD--ITPLGILTNLDELSLNGNQLKD--IGTLASL 242

Query: 351 SSLTRLDLSRNMLNGSIPLSLGKISHLEYLDLSNNKMNGTLSEIHFVNLTKLTWFSASGN 410
           ++LT LDL+ N ++   PLS   ++ L  L L  N+++  +S +    LT LT    + N
Sbjct: 243 TNLTDLDLANNQISNLAPLS--GLTKLTELKLGANQISN-ISPLA--GLTALTNLELNEN 297

Query: 411 SLILQVNPNWVPPF----QLKTLLLMSCHLGPQFPSWLHSQKNLSVLDISNARISDTIP- 465
            L        + P      L  L L   ++     S + S   L  L   N ++SD    
Sbjct: 298 QL------EDISPISNLKNLTYLTLYFNNI--SDISPVSSLTKLQRLFFYNNKVSDVSSL 349

Query: 466 ------RWFWNSIFQLSGIIPESFKNFSNLEVLNLGDNEFVGKIPTWMGEGFTSLLILIL 519
                  W      Q+S + P    N + +  L L D  +      +      S+   + 
Sbjct: 350 ANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVNYKAN--VSIPNTVK 405

Query: 520 RSNKFDGFLPIQLCRLTSLQILDVANNSLSGT 551
                    P  +    S    D+  N  S T
Sbjct: 406 NVTGAL-IAPATISDGGSYTEPDITWNLPSYT 436

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  144 bits (366), Expect = 3e-37
 Identities = 97/557 (17%), Positives = 172/557 (30%), Gaps = 141/557 (25%)

Query: 138 LGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRCLDLSWSEYALQVHSFSWLSGQIPNRLG 197
             +L       L        +     +L  +  L                L  +  + + 
Sbjct: 20  DTALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQA------------DRLGIKSIDGVE 65

Query: 198 NLTSLRHLDLSANKFNSTTAGWLSKFNHLEFLSLSSNGLQGTISSIGLENLTSIKTIDLS 257
            L +L  ++ S N+    T   L     L  + +++N +        L NLT++  + L 
Sbjct: 66  YLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIA---DITPLANLTNLTGLTLF 120

Query: 258 LNFELGGPIPTSFVRLCELTSIDVSDVKLSQDLSQVLDILSACGASALESLVFSSSQISG 317
            N ++    P     L  L  +++S   +S       DI +  G ++L+ L F +     
Sbjct: 121 NN-QITDIDP--LKNLTNLNRLELSSNTIS-------DISALSGLTSLQQLSFGNQVTD- 169

Query: 318 HLTSQLGQFKSLRTLSLDDNCISGPLPPALGDLSSLTRLDLSRNMLNGSIPLSLGKISHL 377
                L    +L  L +  N +S      L  L++L  L  + N ++   P  LG +++L
Sbjct: 170 --LKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITP--LGILTNL 223

Query: 378 EYLDLSNNKMNGTLSEI-HFVNLTKLTWFSASGNSLILQVNPNWVPPFQLKTLLLMSCHL 436
           + L L+ N+    L +I    +LT LT    + N              Q+  L       
Sbjct: 224 DELSLNGNQ----LKDIGTLASLTNLTDLDLANN--------------QISNL------- 258

Query: 437 GPQFPSWLHSQKNLSVLDISNARISDTIPRWFWNSIFQLSGIIPESFKNFSNLEVLNLGD 496
                + L     L+ L +   +IS+  P                     + L  L L +
Sbjct: 259 -----APLSGLTKLTELKLGANQISNISP-----------------LAGLTALTNLELNE 296

Query: 497 NEFVGKIPTWMGEGFTSLLILILRSNKFDGFLPIQLCRLTSLQILDVANNSLSGTMPGCV 556
           N+     P        +L  L L  N      P+    LT LQ L   NN +S       
Sbjct: 297 NQLEDISPI---SNLKNLTYLTLYFNNISDISPVS--SLTKLQRLFFYNNKVSD------ 345

Query: 557 NNFSAMATIDSSHQSNAMSYFEVTAYDCEVLEDASIVMKGSMVEYNSILNLVRIIDVSKN 616
                                                     V   + L  +  +    N
Sbjct: 346 ------------------------------------------VSSLANLTNINWLSAGHN 363

Query: 617 NFSGEIPMELTYLRGLQSLNLSHNIFTGQIPENIGNLISIESLDFSTNQLSSKISQSMSS 676
             S   P  L  L  +  L L+   +T   P N    +SI +   +        + ++S 
Sbjct: 364 QISDLTP--LANLTRITQLGLNDQAWTN-APVNYKANVSIPNTVKNVTGALIAPA-TISD 419

Query: 677 LSFLNHLNVSNNLLTGK 693
                  +++ NL +  
Sbjct: 420 GGSYTEPDITWNLPSYT 436

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  130 bits (329), Expect = 2e-32
 Identities = 94/510 (18%), Positives = 171/510 (33%), Gaps = 115/510 (22%)

Query: 197 GNLTSLRHLDLSANKFNSTTAGWLSKFNHLEFLSLSSNGLQGTISSIGLENLTSIKTIDL 256
           G L S           N       +         L    +  T+S     +L  + T+  
Sbjct: 1   GPLGSA--TITQDTPINQIFT--DTALAEKMKTVLGKTNVTDTVS---QTDLDQVTTLQA 53

Query: 257 SLNFELGGPIPTSFVRLCELTSIDVSDVKLSQDLSQVLDILSACGASALESLVFSSSQIS 316
                 G         L  LT I+ S+ +L+       DI      + L  ++ +++QI+
Sbjct: 54  DRL---GIKSIDGVEYLNNLTQINFSNNQLT-------DITPLKNLTKLVDILMNNNQIA 103

Query: 317 GHLTSQLGQFKSLRTLSLDDNCISGPLPPALGDLSSLTRLDLSRNMLNGSIPLSLGKISH 376
               + L    +L  L+L +N I+      L +L++L RL+LS N ++    LS   ++ 
Sbjct: 104 D--ITPLANLTNLTGLTLFNNQITD--IDPLKNLTNLNRLELSSNTISDISALS--GLTS 157

Query: 377 LEYLDLSNNKMNGTLSEIHFVNLTKLTWFSASGNSLILQVNPNWVPPF----QLKTLLLM 432
           L+ L   N             NLT L     S N +      + +        L++L+  
Sbjct: 158 LQQLSFGNQV----TDLKPLANLTTLERLDISSNKV------SDISVLAKLTNLESLIAT 207

Query: 433 SCHLGPQFPSWLHSQKNLSVLDISNARISDTIPRWFWNSIFQLSGIIPESFKNFSNLEVL 492
           +  +     + L    NL  L ++  ++ D                   +  + +NL  L
Sbjct: 208 NNQI--SDITPLGILTNLDELSLNGNQLKD-----------------IGTLASLTNLTDL 248

Query: 493 NLGDNEFVGKIPTWMGEGFTSLLILILRSNKFDGFLPIQLCRLTSLQILDVANNSLSGTM 552
           +L +N+     P     G T L  L L +N+     P+    LT+L  L++  N L    
Sbjct: 249 DLANNQISNLAPL---SGLTKLTELKLGANQISNISPLA--GLTALTNLELNENQLED-- 301

Query: 553 PGCVNNFSAMATIDSSHQSNAMSYFEVTAYDCEVLEDASIVMKGSMVEYNSILNLVRIID 612
                                                         +   S L  +  + 
Sbjct: 302 ----------------------------------------------ISPISNLKNLTYLT 315

Query: 613 VSKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQIPENIGNLISIESLDFSTNQLSSKISQ 672
           +  NN S   P  ++ L  LQ L   +N  +     ++ NL +I  L    NQ+S     
Sbjct: 316 LYFNNISDISP--VSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQISDLT-- 369

Query: 673 SMSSLSFLNHLNVSNNLLTGKIPSSTQLQS 702
            +++L+ +  L +++   T    +     S
Sbjct: 370 PLANLTRITQLGLNDQAWTNAPVNYKANVS 399

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  126 bits (318), Expect = 6e-31
 Identities = 88/396 (22%), Positives = 158/396 (39%), Gaps = 64/396 (16%)

Query: 111 PSLVDLKHLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRC 170
             L +L +L  L+LS N    I     L  L +L+ L+    +   + P  L NL+ L  
Sbjct: 128 DPLKNLTNLNRLELSSNT---ISDISALSGLTSLQQLSFGN-QVTDLKP--LANLTTLER 181

Query: 171 LDLSWSEYALQVHSFSWLSGQI--PNRLGNLTSLRHLDLSANKFNSTTAGWLSKFNHLEF 228
           LD+S              S ++   + L  LT+L  L  + N+ +  T   L    +L+ 
Sbjct: 182 LDIS--------------SNKVSDISVLAKLTNLESLIATNNQISDITP--LGILTNLDE 225

Query: 229 LSLSSNGLQGTISSIGLENLTSIKTIDLSLNFELGGPIPTSFVRLCELTSIDVSDVKLSQ 288
           LSL+ N L+  I +  L +LT++  +DL+ N ++    P     L +LT + +   ++S 
Sbjct: 226 LSLNGNQLKD-IGT--LASLTNLTDLDLANN-QISNLAP--LSGLTKLTELKLGANQIS- 278

Query: 289 DLSQVLDILSACGASALESLVFSSSQISGHLTSQLGQFKSLRTLSLDDNCISGPLPPALG 348
                 +I    G +AL +L  + +Q+     S +   K+L  L+L  N IS   P  + 
Sbjct: 279 ------NISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLYFNNISDISP--VS 328

Query: 349 DLSSLTRLDLSRNMLNGSIPLSLGKISHLEYLDLSNNKMNGTLSEIHFVNLTKLTWFSAS 408
            L+ L RL    N ++     SL  ++++ +L   +N+++         NLT++T    +
Sbjct: 329 SLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQIS---DLTPLANLTRITQLGLN 383

Query: 409 GNSLILQVNPNWVPPFQLKTLLLMSCHLGPQFPSWLHSQKNLSVLDISNARISDTIPRWF 468
             +       N+     +   +          P+ +    + +  DI+            
Sbjct: 384 DQAWTN-APVNYKANVSIPNTVKNVTGA-LIAPATISDGGSYTEPDIT------------ 429

Query: 469 WNSIFQLSGIIPESFKNFSNLEVLNLGDNEFVGKIP 504
           WN    L     E    FS    +  G   F G + 
Sbjct: 430 WN----LPSYTNEVSYTFSQPVTIGKGTTTFSGTVT 461

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 95.4 bits (238), Expect = 9e-21
 Identities = 74/404 (18%), Positives = 131/404 (32%), Gaps = 114/404 (28%)

Query: 305 LESLVFSSSQISGHLTSQLGQFKSLRTLSLDDNCISGPLPPALGDLSSLTRLDLSRNMLN 364
               V   + ++   T        + TL  D   I       +  L++LT+++ S N L 
Sbjct: 26  KMKTVLGKTNVTD--TVSQTDLDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLT 81

Query: 365 GSIPLSLGKISHLEYLDLSNNKMNGTLSEIHFVNLTKLTWFSASGNSLILQVNPNWVPPF 424
              PL    ++ L  + ++NN++          NLT LT  +   N              
Sbjct: 82  DITPLK--NLTKLVDILMNNNQIA---DITPLANLTNLTGLTLFNN-------------- 122

Query: 425 QLKTLLLMSCHLGPQFPSWLHSQKNLSVLDISNARISDTIPRWFWNSIFQLSGIIPESFK 484
           Q+  +              L +  NL+ L++S+  ISD                   +  
Sbjct: 123 QITDI------------DPLKNLTNLNRLELSSNTISD-----------------ISALS 153

Query: 485 NFSNLEVLNLGDNEFVGKIPTWMGEGFTSLLILILRSNKFDGFLPIQLCRLTSLQILDVA 544
             ++L+ L+ G N+     P       T+L  L + SNK        L +LT+L+ L   
Sbjct: 154 GLTSLQQLSFG-NQVTDLKPL---ANLTTLERLDISSNKVSDISV--LAKLTNLESLIAT 207

Query: 545 NNSLSGTMPGCVNNFSAMATIDSSHQSNAMSYFEVTAYDCEVLEDASIVMKGSMVEYNSI 604
           NN +S                                                 +    I
Sbjct: 208 NNQISD------------------------------------------------ITPLGI 219

Query: 605 LNLVRIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQIPENIGNLISIESLDFSTN 664
           L  +  + ++ N    +I   L  L  L  L+L++N  +      +  L  +  L    N
Sbjct: 220 LTNLDELSLNGNQLK-DIG-TLASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGAN 275

Query: 665 QLSSKISQSMSSLSFLNHLNVSNNLLTGKIPSS--TQLQSFDAS 706
           Q+S+     ++ L+ L +L ++ N L    P S    L      
Sbjct: 276 QISN--ISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLY 317

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 68.5 bits (168), Expect = 3e-12
 Identities = 55/284 (19%), Positives = 108/284 (38%), Gaps = 51/284 (17%)

Query: 448 KNLSVLDISNARISDTIPRWFWNSIFQLS----GI-IPESFKNFSNLEVLNLGDNEFVGK 502
                  +    ++DT+ +   + +  L     GI   +  +  +NL  +N  +N+    
Sbjct: 24  AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDI 83

Query: 503 IPTWMGEGFTSLLILILRSNKFDGFLPIQLCRLTSLQILDVANNSLSGTMPGCVNNFSAM 562
            P    +  T L+ +++ +N+     P  L  LT+L  L + NN ++   P  + N + +
Sbjct: 84  TPL---KNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP--LKNLTNL 136

Query: 563 ATIDSSHQSNAMSYFEVTAYDCEVLEDASIVMKGSMVEYNSILNLVRIIDVS-KNNFSGE 621
             ++ S   N +S                           ++  L  +  +S  N  +  
Sbjct: 137 NRLELSS--NTISDIS------------------------ALSGLTSLQQLSFGNQVTDL 170

Query: 622 IPMELTYLRGLQSLNLSHNIFTGQIPENIGNLISIESLDFSTNQLSSKISQSMSSLSFLN 681
            P  L  L  L+ L++S N  +      +  L ++ESL  + NQ+S      +  L+ L+
Sbjct: 171 KP--LANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 224

Query: 682 HLNVSNNLLTGKIPSS--TQLQSFDASCFVGNNLCG-PPLPSCT 722
            L+++ N L      +  T L   D +    N +    PL   T
Sbjct: 225 ELSLNGNQLKDIGTLASLTNLTDLDLA---NNQISNLAPLSGLT 265

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  156 bits (395), Expect = 2e-40
 Identities = 105/574 (18%), Positives = 190/574 (33%), Gaps = 77/574 (13%)

Query: 119 LTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRCLDLSWSEY 178
               D     F    IP  L     ++ L+LS  +   I    L   +NL+ L L  S  
Sbjct: 7   SGVCDGRSRSFT--SIPSGL--TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSR- 61

Query: 179 ALQVHSFSWLSGQIPNRLGNLTSLRHLDLSANKFNSTTAGWLSKFNHLEFLSLSSNGLQG 238
                    ++    +   +L SL HLDLS N  +S ++ W    + L++L+L  N  Q 
Sbjct: 62  ---------INTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQT 112

Query: 239 TISSIGLENLTSIKTIDLSLNFELGGPIPTSFVRLCELTSIDVSDVKLSQDLSQVLDILS 298
              +    NLT+++T+ +             F  L  L  +++  + L    SQ L  + 
Sbjct: 113 LGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSI- 171

Query: 299 ACGASALESLVFSSSQISGHLTSQLGQFKSLRTLSLDDNCISGPLPPALGDLSSLTRLDL 358
                 +  L    S+ +  L        S+R L L D  ++      L      + +  
Sbjct: 172 ----RDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKK 227

Query: 359 SRNMLNGSIPLSLGKISHLEYLDLSNNKMNGTLSEIHFVNLTKLTWFSASGNSLILQVNP 418
                +     S  ++  L    L        LSE+ F + T       + +   +    
Sbjct: 228 LAFRGSVLTDESFNELLKLLRYILE-------LSEVEFDDCTLNGLGDFNPSESDVVSEL 280

Query: 419 NWVPPFQLKTLLLMSCHLGPQFPSWLHSQKNLSVLDISNARISDTIPRWFWNSIFQLSGI 478
             V    ++ L +   +L     +     + +  + + N+++                 +
Sbjct: 281 GKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFL---------------V 325

Query: 479 IPESFKNFSNLEVLNLGDNEFVGKIPTWMG--EGFTSLLILILRSNKFD--GFLPIQLCR 534
                ++  +LE L+L +N  V +          + SL  L+L  N           L  
Sbjct: 326 PCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLT 385

Query: 535 LTSLQILDVANNSLSGTMPGCVNNFSAMATIDSSHQSNAMSYFEVTAYDCEVLEDASIVM 594
           L +L  LD++ N+    MP        M  ++ S     +   +                
Sbjct: 386 LKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSS--TGIRVVK---------------- 426

Query: 595 KGSMVEYNSILNLVRIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQIPENIGNLI 654
                    I   + ++DVS NN      + L     LQ L +S N     +P+      
Sbjct: 427 -------TCIPQTLEVLDVSNNNLD-SFSLFLP---RLQELYISRNKLK-TLPDA-SLFP 473

Query: 655 SIESLDFSTNQLSSKISQSMSSLSFLNHLNVSNN 688
            +  +  S NQL S        L+ L  + +  N
Sbjct: 474 VLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTN 507

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  147 bits (373), Expect = 1e-37
 Identities = 82/453 (18%), Positives = 156/453 (34%), Gaps = 54/453 (11%)

Query: 113 LVDLKHLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQ-LGNLSNLRCL 171
              L  L +L+L GN +Q + +     +L NL+ L +   E    I       L++L  L
Sbjct: 94  FGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNEL 153

Query: 172 DLSWSEYALQVHSFSWLSGQIPNRLGNLTSLRHLDLSANKFNSTTAGWLSKFNHLEFLSL 231
           ++              L       L ++  + HL L  ++       +    + + +L L
Sbjct: 154 EI----------KALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLEL 203

Query: 232 SSNGLQGTISSI--GLENLTSIKTIDLSLNFELGGP---IPTSFVRLCELTSIDVSDVKL 286
               L     S     E  + +K +    +         +      + EL+ ++  D  L
Sbjct: 204 RDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTL 263

Query: 287 SQ------DLSQVLDILSACGASALESLVFSSSQISGHLTSQLGQFKSLRTLSLDDNCIS 340
           +         S V+  L       +  L      +   L++     + ++ ++++++ + 
Sbjct: 264 NGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF 323

Query: 341 GPLPPALGDLSSLTRLDLSRNMLNGSI---PLSLGKISHLEYLDLSNNKMNGTLSEIH-- 395
                    L SL  LDLS N++           G    L+ L LS N +  ++ +    
Sbjct: 324 LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLR-SMQKTGEI 382

Query: 396 FVNLTKLTWFSASGNSLILQVNPNWVPPFQLKTLLLMSCHLGPQFPSWLHSQKNLSVLDI 455
            + L  LT    S N+    +  +   P +++ L L S  +             L VLD+
Sbjct: 383 LLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQ---TLEVLDV 438

Query: 456 SNARISDTIPRWFWNSIFQLSGIIPESFKNFSNLEVLNLGDNEFVGKIPTWMGEGFTSLL 515
           SN            N++   S            L+ L +  N+    +P      F  LL
Sbjct: 439 SN------------NNLDSFS-------LFLPRLQELYISRNKLK-TLPD--ASLFPVLL 476

Query: 516 ILILRSNKFDGFLPIQLCRLTSLQILDVANNSL 548
           ++ +  N+          RLTSLQ + +  N  
Sbjct: 477 VMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  139 bits (352), Expect = 7e-35
 Identities = 90/459 (19%), Positives = 166/459 (36%), Gaps = 60/459 (13%)

Query: 112 SLVDLKHLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRCL 171
            L    +L  L L  +    I       SL +L +L+LS    + +     G LS+L+ L
Sbjct: 45  DLRACANLQVLILKSSRINTIE-GDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYL 103

Query: 172 DLSWSEYALQVHSFSWLSGQIPNRLGNLTSLRHLDLS-ANKFNSTTAGWLSKFNHLEFLS 230
           +L  + Y          +  + +   NLT+L+ L +     F+       +    L  L 
Sbjct: 104 NLMGNPYQ---------TLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELE 154

Query: 231 LSSNGLQGTISSIGLENLTSIKTIDLSLNFELGGPIPTSFVRLCELTSIDVSDVKLSQDL 290
           + +  L+    S  L+++  I  + L L+ E    +      L  +  +++ D  L++  
Sbjct: 155 IKALSLR-NYQSQSLKSIRDIHHLTLHLS-ESAFLLEIFADILSSVRYLELRDTNLARFQ 212

Query: 291 SQVLDILSACGASALESLVFSSSQIS----GHLTSQLGQFKSLRTLSLDDNCISG--PLP 344
              L +      S ++ L F  S ++      L   L     L  +  DD  ++G     
Sbjct: 213 FSPLPVDEVS--SPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFN 270

Query: 345 PALGD---------LSSLTRLDLSRNMLNGSIPLSLGKISHLEYLDLSNNKMNGTLSEIH 395
           P+  D           ++ RL + +  L   +      +  ++ + + N+K+   +    
Sbjct: 271 PSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSF 329

Query: 396 FVNLTKLTWFSASGNSLILQVNPNWVPPFQ---LKTLLLMSCHLG--PQFPSWLHSQKNL 450
             +L  L +   S N ++ +   N         L+TL+L   HL    +    L + KNL
Sbjct: 330 SQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNL 389

Query: 451 SVLDISNARISDTIPRWFWNSIFQLSGIIPESFKNFSNLEVLNLGDNEFVGKIPTWMGEG 510
           + LDIS                      +P+S +    +  LNL        I       
Sbjct: 390 TSLDISRNTFHP----------------MPDSCQWPEKMRFLNLSST----GIRVVKTCI 429

Query: 511 FTSLLILILRSNKFDGFLPIQLCRLTSLQILDVANNSLS 549
             +L +L + +N  D F       L  LQ L ++ N L 
Sbjct: 430 PQTLEVLDVSNNNLDSFSL----FLPRLQELYISRNKLK 464

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  129 bits (327), Expect = 1e-31
 Identities = 79/402 (19%), Positives = 144/402 (35%), Gaps = 47/402 (11%)

Query: 112 SLVDLKHLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRCL 171
               L  L  L++     +  +  + L S++++ +L L  +E A ++      LS++R L
Sbjct: 143 DFAGLTSLNELEIKALSLRNYQ-SQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYL 201

Query: 172 DLS-WSEYALQVHSFSWLSGQIPNRLGNLTSLRHLDLSANKFNSTTAGWLSKFNHLEFLS 230
           +L   +    Q           P +          D S N+        L   + +EF  
Sbjct: 202 ELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILE-LSEVEFDD 260

Query: 231 LSSNGLQ-------GTISSIGLENLTSIKTIDLSLNFELGGPIPTSFVRLCELTSIDVSD 283
            + NGL          +S +G     +I+ + +   F L   + T +  L ++  I V +
Sbjct: 261 CTLNGLGDFNPSESDVVSELGKVETVTIRRLHIP-QFYLFYDLSTVYSLLEKVKRITVEN 319

Query: 284 VKLSQDLSQVLDILSACGASALESLVFSSSQIS---GHLTSQLGQFKSLRTLSLDDNCIS 340
            K+                 +LE L  S + +       ++  G + SL+TL L  N + 
Sbjct: 320 SKVFLVPCSFSQ-----HLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLR 374

Query: 341 --GPLPPALGDLSSLTRLDLSRNMLNGSIPLSLGKISHLEYLDLSNNKMNGTLSEIHFVN 398
                   L  L +LT LD+SRN  +  +P S      + +L+LS+      +  +    
Sbjct: 375 SMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTG----IRVVKTCI 429

Query: 399 LTKLTWFSASGNSLILQVNPNWVPPFQLKTLLLMSCHLGPQFPSWLHSQKNLSVLDISNA 458
              L     S N+L    +   +   +L+ L +    L    P        L V+ IS  
Sbjct: 430 PQTLEVLDVSNNNL----DSFSLFLPRLQELYISRNKLK-TLPDASLF-PVLLVMKISR- 482

Query: 459 RISDTIPRWFWNSIFQLSGIIPESFKNFSNLEVLNLGDNEFV 500
                      N   QL  +    F   ++L+ + L  N + 
Sbjct: 483 -----------N---QLKSVPDGIFDRLTSLQKIWLHTNPWD 510

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  113 bits (285), Expect = 2e-26
 Identities = 77/418 (18%), Positives = 140/418 (33%), Gaps = 50/418 (11%)

Query: 303 SALESLVFSSSQISGHLTSQLGQFKSLRTLSLDDNCISGPLPPALGDLSSLTRLDLSRNM 362
           +A++SL  S ++I+      L    +L+ L L  + I+     A   L SL  LDLS N 
Sbjct: 26  AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNH 85

Query: 363 LNGSIPLSLGKISHLEYLDLSNNKMNGTLSEIHFVNLTKLTWFSASGNSLILQVNPNWVP 422
           L+       G +S L+YL+L  N          F NLT L            ++      
Sbjct: 86  LSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFA 145

Query: 423 PF-QLKTLLLMSCHLGPQFPSWLHSQKNLSVLDISNARISDTIPRWFWNSIFQLSGIIPE 481
               L  L + +  L       L S +++  L +  +  +                ++  
Sbjct: 146 GLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAF---------------LLEI 190

Query: 482 SFKNFSNLEVLNLGDNEFVGKIPTWMGEGFTSLLILILRSNKFDGF----------LPIQ 531
                S++  L L D     +              +   + +              L   
Sbjct: 191 FADILSSVRYLELRDTNL-ARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRY 249

Query: 532 LCRLTSLQILDVANNSLSGTMPGCVNNFSAMATIDSSH-QSNAMSYFEVTAYDCEVLEDA 590
           +  L+ ++  D   N L    P   +  S +  +++   +   +  F +      V    
Sbjct: 250 ILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSL- 308

Query: 591 SIVMKGSMVEYNSILNLVRIIDVSKNNFSGEIPME-LTYLRGLQSLNLSHNIFTGQIPEN 649
                         L  V+ I V  +     +P     +L+ L+ L+LS N+   +  +N
Sbjct: 309 --------------LEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKN 353

Query: 650 ---IGNLISIESLDFSTNQLSS--KISQSMSSLSFLNHLNVSNNLLTGKIPSSTQLQS 702
               G   S+++L  S N L S  K  + + +L  L  L++S N       S    + 
Sbjct: 354 SACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEK 411

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 91.7 bits (228), Expect = 2e-19
 Identities = 46/290 (15%), Positives = 91/290 (31%), Gaps = 51/290 (17%)

Query: 110 NPSLVDLKHLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLR 169
               V+   +  L +         +      L+ ++ + +  ++   +      +L +L 
Sbjct: 279 ELGKVETVTIRRLHIPQFYLFYD-LSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLE 337

Query: 170 CLDLSWSEYALQVHSFSWLSGQIPNRLGNLTSLRHLDLSANKFNS--TTAGWLSKFNHLE 227
            LDLS +              +     G   SL+ L LS N   S   T   L    +L 
Sbjct: 338 FLDLSEN-------LMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLT 390

Query: 228 FLSLSSNGLQGTISSIGLENLTSIKTIDLSLNFELGGPIPTSFVRLCELTSIDVSDVKLS 287
            L +S N           +    ++ ++LS                              
Sbjct: 391 SLDISRNTF--HPMPDSCQWPEKMRFLNLSSTG--------------------------- 421

Query: 288 QDLSQVLDILSACGASALESLVFSSSQISGHLTSQLGQFKSLRTLSLDDNCISGPLPPAL 347
                 + ++  C    LE L  S++ +    +  L     L+ L +  N +   LP A 
Sbjct: 422 ------IRVVKTCIPQTLEVLDVSNNNLD-SFSLFL---PRLQELYISRNKLKT-LPDAS 470

Query: 348 GDLSSLTRLDLSRNMLNGSIPLSLGKISHLEYLDLSNNKMNGTLSEIHFV 397
                L  + +SRN L         +++ L+ + L  N  + +   I ++
Sbjct: 471 L-FPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYL 519

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  139 bits (353), Expect = 2e-36
 Identities = 82/431 (19%), Positives = 149/431 (34%), Gaps = 86/431 (19%)

Query: 119 LTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRCLDLSWSEY 178
              L         I        L       L  A    ++      L ++  L ++    
Sbjct: 2   AATLATLPAPINQI---FPDADLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGE-- 54

Query: 179 ALQVHSFSWLSGQIPNRLGNLTSLRHLDLSANKFNSTTAGWLSKFNHLEFLSLSSNGLQG 238
             +V S           +  LT+L +L+L+ N+    +   LS    L  L + +N +  
Sbjct: 55  --KVASIQ--------GIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKIT- 101

Query: 239 TISSIGLENLTSIKTIDLSLNFELGGPIPTSFVRLCELTSIDVSDVKLSQDLSQVLDILS 298
            IS++   NLT+++ + L+ +  +    P     L ++ S+++       DLS +     
Sbjct: 102 DISALQ--NLTNLRELYLNED-NISDISP--LANLTKMYSLNLGANHNLSDLSPL----- 151

Query: 299 ACGASALESLVFSSSQISGHLTSQLGQFKSLRTLSLDDNCISGPLPPALGDLSSLTRLDL 358
               + L  L  + S++     + +     L +LSL+ N I       L  L+SL     
Sbjct: 152 -SNMTGLNYLTVTESKVKD--VTPIANLTDLYSLSLNYNQIEDI--SPLASLTSLHYFTA 206

Query: 359 SRNMLNGSIPLSLGKISHLEYLDLSNNKMNGTLSEIHFVNLTKLTWFSASGNSLILQVNP 418
             N +    P+    ++ L  L + NNK+          NL++LTW     N        
Sbjct: 207 YVNQITDITPV--ANMTRLNSLKIGNNKITDLSP---LANLSQLTWLEIGTN-------- 253

Query: 419 NWVPPFQLKTLLLMSCHLGPQFPSWLHSQKNLSVLDISNARISDTIPRWFWNSIFQLSGI 478
                 Q+  +            + +     L +L++ + +ISD                
Sbjct: 254 ------QISDI------------NAVKDLTKLKMLNVGSNQISD---------------- 279

Query: 479 IPESFKNFSNLEVLNLGDNEFVGKIPTWMGEGFTSLLILILRSNKFDGFLPIQLCRLTSL 538
                 N S L  L L +N+   +    +G G T+L  L L  N      P+    L+ +
Sbjct: 280 -ISVLNNLSQLNSLFLNNNQLGNEDMEVIG-GLTNLTTLFLSQNHITDIRPLA--SLSKM 335

Query: 539 QILDVANNSLS 549
              D AN  + 
Sbjct: 336 DSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  136 bits (345), Expect = 2e-35
 Identities = 75/389 (19%), Positives = 152/389 (39%), Gaps = 83/389 (21%)

Query: 111 PSLVDLKHLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRC 170
            +  +L+ +T L ++G     I   + +  L NL YLNL+G +   I P  L NL  L  
Sbjct: 38  VTQEELESITKLVVAGEKVASI---QGIEYLTNLEYLNLNGNQITDISP--LSNLVKLTN 92

Query: 171 LDLSWSEYALQVHSFSWLSGQIPNRLGNLTSLRHLDLSANKFNSTTAGWLSKFNHLEFLS 230
           L +  ++                + L NLT+LR L L+ +  +  +   L+    +  L+
Sbjct: 93  LYIGTNK------------ITDISALQNLTNLRELYLNEDNISDISP--LANLTKMYSLN 138

Query: 231 LSSNGLQGTISSIGLENLTSIKTIDLSLNFELGGPIPTSFVRLCELTSIDVSDVKLSQDL 290
           L +N     +S +   N+T +  + ++ + ++    P     L +L S+ ++  ++    
Sbjct: 139 LGANHNLSDLSPLS--NMTGLNYLTVTES-KVKDVTP--IANLTDLYSLSLNYNQIE--- 190

Query: 291 SQVLDILSACGASALESLVFSSSQISGHLTSQLGQFKSLRTLSLDDNCISGPLPPALGDL 350
               DI      ++L       +QI+    + +     L +L + +N I+      L +L
Sbjct: 191 ----DISPLASLTSLHYFTAYVNQITD--ITPVANMTRLNSLKIGNNKITD--LSPLANL 242

Query: 351 SSLTRLDLSRNMLNGSIPLSLGKISHLEYLDLSNNKMNGTLSEI-HFVNLTKLTWFSASG 409
           S LT L++  N ++  I  ++  ++ L+ L++ +N+    +S+I    NL++L     + 
Sbjct: 243 SQLTWLEIGTNQIS-DIN-AVKDLTKLKMLNVGSNQ----ISDISVLNNLSQLNSLFLNN 296

Query: 410 NSLILQVNPNWVPPFQLKTLLLMSCHLGPQFPSWLHSQKNLSVLDISNARISDTIPRWFW 469
           N              QL                 +    NL+ L +S   I+D  P    
Sbjct: 297 N--------------QLGNED----------MEVIGGLTNLTTLFLSQNHITDIRP---- 328

Query: 470 NSIFQLSGIIPESFKNFSNLEVLNLGDNE 498
                          + S ++  +  +  
Sbjct: 329 -------------LASLSKMDSADFANQV 344

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  133 bits (336), Expect = 4e-34
 Identities = 70/302 (23%), Positives = 122/302 (40%), Gaps = 38/302 (12%)

Query: 111 PSLVDLKHLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRC 170
             L +L  LT+L +  N    I     L +L NLR L L+    + I P  L NL+ +  
Sbjct: 82  SPLSNLVKLTNLYIGTN---KITDISALQNLTNLRELYLNEDNISDISP--LANLTKMYS 136

Query: 171 LDLSWSEYALQVHSFSWLSGQIPNRLGNLTSLRHLDLSANKFNSTTAGWLSKFNHLEFLS 230
           L+L            +     +   L N+T L +L ++ +K    T   ++    L  LS
Sbjct: 137 LNLG----------ANHNLSDLSP-LSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLS 183

Query: 231 LSSNGLQGTISSIGLENLTSIKTIDLSLNFELGGPIPTSFVRLCELTSIDVSDVKLSQDL 290
           L+ N ++       L +LTS+      +N ++    P     +  L S+ + + K++   
Sbjct: 184 LNYNQIE---DISPLASLTSLHYFTAYVN-QITDITP--VANMTRLNSLKIGNNKIT--- 234

Query: 291 SQVLDILSACGASALESLVFSSSQISGHLTSQLGQFKSLRTLSLDDNCISGPLPPALGDL 350
               D+      S L  L   ++QIS    + +     L+ L++  N IS      L +L
Sbjct: 235 ----DLSPLANLSQLTWLEIGTNQISD--INAVKDLTKLKMLNVGSNQISDI--SVLNNL 286

Query: 351 SSLTRLDLSRNMLNGSIPLSLGKISHLEYLDLSNNKMNGTLSEIHFVNLTKLTWFSASGN 410
           S L  L L+ N L       +G +++L  L LS N +          +L+K+     +  
Sbjct: 287 SQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHIT---DIRPLASLSKMDSADFANQ 343

Query: 411 SL 412
            +
Sbjct: 344 VI 345

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  121 bits (305), Expect = 5e-30
 Identities = 75/421 (17%), Positives = 155/421 (36%), Gaps = 81/421 (19%)

Query: 276 LTSIDVSDVKLSQDLSQVLDILSACGASALESLVFSSSQISGHLTSQLGQFKSLRTLSLD 335
             ++      ++        I      +     V   + ++        + +S+  L + 
Sbjct: 2   AATLATLPAPIN-------QIFPDADLAEGIRAVLQKASVTD--VVTQEELESITKLVVA 52

Query: 336 DNCISGPLPPALGDLSSLTRLDLSRNMLNGSIPLSLGKISHLEYLDLSNNKMNGTLSEI- 394
              ++      +  L++L  L+L+ N +    PLS   +  L  L +  NK    +++I 
Sbjct: 53  GEKVASI--QGIEYLTNLEYLNLNGNQITDISPLS--NLVKLTNLYIGTNK----ITDIS 104

Query: 395 HFVNLTKLTWFSASGNSLILQVNPNWVPPF----QLKTLLLMSCHLGPQFPSWLHSQKNL 450
              NLT L     + +++      + + P     ++ +L L + H      S L +   L
Sbjct: 105 ALQNLTNLRELYLNEDNI------SDISPLANLTKMYSLNLGANHNL-SDLSPLSNMTGL 157

Query: 451 SVLDISNARISDTIPRWFWNSIFQLSGIIPESFKNFSNLEVLNLGDNEFVGKIPTWMGEG 510
           + L ++ +++ D  P                   N ++L  L+L  N+     P      
Sbjct: 158 NYLTVTESKVKDVTP-----------------IANLTDLYSLSLNYNQIEDISPL---AS 197

Query: 511 FTSLLILILRSNKFDGFLPIQLCRLTSLQILDVANNSLSGTMPGCVNNFSAMATIDSSHQ 570
            TSL       N+     P  +  +T L  L + NN ++   P  + N S +  ++    
Sbjct: 198 LTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGT- 252

Query: 571 SNAMSYFEVTAYDCEVLEDASIVMKGSMVEYNSILNLVRIIDVSKNNFSGEIPMELTYLR 630
            N +S                             L  +++++V  N  S +I   L  L 
Sbjct: 253 -NQISDINAVKD----------------------LTKLKMLNVGSNQIS-DIS-VLNNLS 287

Query: 631 GLQSLNLSHNIFTGQIPENIGNLISIESLDFSTNQLSSKISQSMSSLSFLNHLNVSNNLL 690
            L SL L++N    +  E IG L ++ +L  S N ++    + ++SLS ++  + +N ++
Sbjct: 288 QLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITD--IRPLASLSKMDSADFANQVI 345

Query: 691 T 691
            
Sbjct: 346 K 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  116 bits (294), Expect = 1e-28
 Identities = 70/376 (18%), Positives = 137/376 (36%), Gaps = 75/376 (19%)

Query: 196 LGNLTSLRHLDLSANKFNSTTAGWLSKFNHLEFLSLSSNGLQGTISSI-GLENLTSIKTI 254
             +L       L              +   +  L ++       ++SI G+E LT+++ +
Sbjct: 18  DADLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEK----VASIQGIEYLTNLEYL 71

Query: 255 DLSLNFELGGPIPTSFVRLCELTSIDVSDVKLSQDLSQVLDILSACGASALESLVFSSSQ 314
           +L+ N ++    P     L +LT++ +   K++       DI +    + L  L  +   
Sbjct: 72  NLNGN-QITDISP--LSNLVKLTNLYIGTNKIT-------DISALQNLTNLRELYLNEDN 121

Query: 315 ISGHLTSQLGQFKSLRTLSLDDNCISGPLPPALGDLSSLTRLDLSRNMLNGSIPLSLGKI 374
           IS    S L     + +L+L  N         L +++ L  L ++ + +    P+    +
Sbjct: 122 ISD--ISPLANLTKMYSLNLGANHNLS-DLSPLSNMTGLNYLTVTESKVKDVTPI--ANL 176

Query: 375 SHLEYLDLSNNKMNGTLSEI-HFVNLTKLTWFSASGNSLILQVNPNWVPPFQLKTLLLMS 433
           + L  L L+ N+    + +I    +LT L +F+A  N              Q+  +    
Sbjct: 177 TDLYSLSLNYNQ----IEDISPLASLTSLHYFTAYVN--------------QITDI---- 214

Query: 434 CHLGPQFPSWLHSQKNLSVLDISNARISDTIPRWFWNSIFQLSGIIPESFKNFSNLEVLN 493
                   + + +   L+ L I N +I+D  P                   N S L  L 
Sbjct: 215 --------TPVANMTRLNSLKIGNNKITDLSP-----------------LANLSQLTWLE 249

Query: 494 LGDNEFVGKIPTWMGEGFTSLLILILRSNKFDGFLPIQLCRLTSLQILDVANNSLSGTMP 553
           +G N+ +  I     +  T L +L + SN+      +    L+ L  L + NN L     
Sbjct: 250 IGTNQ-ISDINAV--KDLTKLKMLNVGSNQISDISVLN--NLSQLNSLFLNNNQLGNEDM 304

Query: 554 GCVNNFSAMATIDSSH 569
             +   + + T+  S 
Sbjct: 305 EVIGGLTNLTTLFLSQ 320

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 88.8 bits (221), Expect = 4e-19
 Identities = 60/404 (14%), Positives = 113/404 (27%), Gaps = 134/404 (33%)

Query: 305 LESLVFSSSQISGHLTSQLGQFKSLRTLSLDDNCISGPLPPALGDLSSLTRLDLSRNMLN 364
             +L    + I+                 L    ++  +     +L S+T+L ++   + 
Sbjct: 2   AATLATLPAPINQ--IFPDADLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKVA 57

Query: 365 GSIPLSLGKISHLEYLDLSNNKMNGTLSEIHFVNLTKLTWFSASGNSLILQVNPNWVPPF 424
            SI   +  +++LEYL+L+ N++          NL KLT      N +            
Sbjct: 58  -SIQ-GIEYLTNLEYLNLNGNQITDI---SPLSNLVKLTNLYIGTNKI------------ 100

Query: 425 QLKTLLLMSCHLGPQFPSWLHSQKNLSVLDISNARISDTIPRWFWNSIFQLSGIIPESFK 484
                            S L +  NL  L ++   ISD                      
Sbjct: 101 --------------TDISALQNLTNLRELYLNEDNISD-----------------ISPLA 129

Query: 485 NFSNLEVLNLGDNEFVGKIPTWMGEGFTSLLILILRSNKFDGFLPIQLCRLTSLQILDVA 544
           N + +  LNLG N  +  +                            L  +T L  L V 
Sbjct: 130 NLTKMYSLNLGANHNLSDLSP--------------------------LSNMTGLNYLTVT 163

Query: 545 NNSLSGTMPGCVNNFSAMATIDSSHQSNAMSYFEVTAYDCEVLEDASIVMKGSMVEYNSI 604
            + +       V   + +                                          
Sbjct: 164 ESKVKD-----VTPIANLT----------------------------------------- 177

Query: 605 LNLVRIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQIPENIGNLISIESLDFSTN 664
            +L   + ++ N      P  L  L  L       N  T      + N+  + SL    N
Sbjct: 178 -DL-YSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITD--ITPVANMTRLNSLKIGNN 231

Query: 665 QLSSKISQSMSSLSFLNHLNVSNNLLTG--KIPSSTQLQSFDAS 706
           +++      +++LS L  L +  N ++    +   T+L+  +  
Sbjct: 232 KITD--LSPLANLSQLTWLEIGTNQISDINAVKDLTKLKMLNVG 273

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  130 bits (329), Expect = 3e-32
 Identities = 68/484 (14%), Positives = 135/484 (27%), Gaps = 82/484 (16%)

Query: 112 SLVDLKHLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRCL 171
                 ++  LDLSGN    I     L     L  LNLS       +   L +LS LR L
Sbjct: 29  LRQSAWNVKELDLSGNPLSQI-SAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTL 85

Query: 172 DLSWSEYALQVHSFSWLSGQIPNRL---GNLTSLRHLDLSANKFNSTTAGWLSKFNHLEF 228
           DL+                   N +       S+  L  + N  +  +    S+    + 
Sbjct: 86  DLNN------------------NYVQELLVGPSIETLHAANNNISRVSC---SRGQGKKN 124

Query: 229 LSLSSNGLQGTISSIGLENLTSIKTIDLSLNFELGGPIPTSFVRLCELTSIDVSDVKLSQ 288
           + L++N +   +  +     + ++ +DL LN                L  +++    +  
Sbjct: 125 IYLANNKIT-MLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD 183

Query: 289 DLSQVLDILSACGASALESLVFSSSQISGHLTSQLGQFKSLRTLSLDDNCISGPLPPALG 348
                           ++  V                F  L+TL L  N ++  + P   
Sbjct: 184 ----------------VKGQVV---------------FAKLKTLDLSSNKLAF-MGPEFQ 211

Query: 349 DLSSLTRLDLSRNMLNGSIPLSLGKISHLEYLDLSNNKMNGTLSEIHFVNLTKLTWFSAS 408
             + +T + L  N L   I  +L    +LE+ DL  N  +       F    ++   +  
Sbjct: 212 SAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270

Query: 409 GNSLI-LQVNPNWVPPFQLKTLLLMSCHLGPQFPSWLHSQK--NLSVLDISNARISDTIP 465
               +  Q       P            L   F   L + K    ++L    +       
Sbjct: 271 TVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETER--- 327

Query: 466 RWFWNSIFQLSGIIPESFKNFSNLEVLNLGDNEFVGKIPTWMGEGFTSLLILILRSNKFD 525
                        +    +N +    ++    ++   +   +     + + L  +    D
Sbjct: 328 -------------LECERENQARQREIDALKEQYR-TVIDQVTLRKQAKITLEQKKKALD 373

Query: 526 GFLPIQLCRLTSLQILDVANNSLSGTMPGCVNNFSAMATIDSSHQSNAMSYFEVTAYDCE 585
             +         L             +       S +  + +  +     Y E  +    
Sbjct: 374 EQVSNGRRAHAELDGTLQQAVGQ-IELQHATEEQSPLQLLRAIVKRYEEMYVEQQSVQNN 432

Query: 586 VLED 589
            + D
Sbjct: 433 AIRD 436

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  114 bits (288), Expect = 5e-27
 Identities = 67/496 (13%), Positives = 135/496 (27%), Gaps = 109/496 (21%)

Query: 197 GNLTSLRHLDLSANKFNSTTAGWLSKFNHLEFLSLSSNGLQGTISSIGLENLTSIKTIDL 256
            N    +   ++ +      A       +++ L LS N L   IS+  L   T ++ ++L
Sbjct: 7   QNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLS-QISAADLAPFTKLELLNL 65

Query: 257 SLNFELGGPIPTSFVRLCELTSIDVSDVKLSQDLSQVLDILSACGASALESLVFSSSQIS 316
           S N             L E   ++                      S L +L  +++ + 
Sbjct: 66  SSN------------VLYETLDLE--------------------SLSTLRTLDLNNNYVQ 93

Query: 317 GHLTSQLGQFKSLRTLSLDDNCISGPLPPALGDLSSLTRLDLSRNMLNGSIPLSLGKISH 376
                +L    S+ TL   +N IS  +  +         + L+ N +     L  G  S 
Sbjct: 94  -----ELLVGPSIETLHAANNNISR-VSCSR--GQGKKNIYLANNKITMLRDLDEGCRSR 145

Query: 377 LEYLDLSNNKMNGTLSEIHFVNLTKLTWFSASGNSLILQVNPNWVPPFQLKTLLLMSCHL 436
           ++YLDL  N+++         +   L   +   N +        V   +LKTL L S  L
Sbjct: 146 VQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFI--YDVKGQVVFAKLKTLDLSSNKL 203

Query: 437 GPQFPSWLHSQKNLSVLDISNARISDTIPRWFWNSIFQLSGIIPESFKNFSNLEVLNLGD 496
                    S   ++ + + N ++                  I ++ +   NLE  +L  
Sbjct: 204 A-FMGPEFQSAAGVTWISLRNNKLVL----------------IEKALRFSQNLEHFDLRG 246

Query: 497 NEFVGKIPTWMGEGFTSLLILILRSNKFDGFLPIQLCRLTSLQILDVANNSLSGTMPGCV 556
           N F              +  +  ++ K       + C  T   +                
Sbjct: 247 NGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEEC--TVPTLGHYGAYCCEDLPAPFA 304

Query: 557 NNFSAMATIDSSHQSNAMSYFEVTAYDCEVLEDASIVMKGSMVEYNSILNLVRIIDVSKN 616
           +   A+   + +  S                                             
Sbjct: 305 DRLIALKRKEHALLSGQ------------------------------------------G 322

Query: 617 NFSGEIPMELTYLRGLQSLNLSHNIFTGQIPENIGNLISIESLDFSTNQLSSKISQSMSS 676
           + +  +  E       + ++     +   I +      +  +L+     L         S
Sbjct: 323 SETERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKAL-----DEQVS 377

Query: 677 LSFLNHLNVSNNLLTG 692
                H  +   L   
Sbjct: 378 NGRRAHAELDGTLQQA 393

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  113 bits (285), Expect = 9e-27
 Identities = 80/544 (14%), Positives = 159/544 (29%), Gaps = 120/544 (22%)

Query: 158 IPHQLGNLSNLRCLDLSWSEYALQVHSFSWLSGQIPNRLGNLTSLRHLDLSANKFNSTTA 217
           I     N +  +   ++ S           L   + +   +  +++ LDLS N  +  +A
Sbjct: 2   IHEIKQNGNRYKIEKVTDSS----------LKQALASLRQSAWNVKELDLSGNPLSQISA 51

Query: 218 GWLSKFNHLEFLSLSSNGLQGTISSIGLENLTSIKTIDLSLNFELGGPIPTSFVRLCELT 277
             L+ F  LE L+LSSN L  T+    LE+L++++T+DL+ N                + 
Sbjct: 52  ADLAPFTKLELLNLSSNVLYETLD---LESLSTLRTLDLNNN---------------YVQ 93

Query: 278 SIDVSDVKLSQDLSQVLDILSACGASALESLVFSSSQISGHLTSQLGQFKSLRTLSLDDN 337
            + V                      ++E+L  +++ IS        + +  + + L +N
Sbjct: 94  ELLVG--------------------PSIETLHAANNNIS---RVSCSRGQGKKNIYLANN 130

Query: 338 CISGPLPPALGDLSSLTRLDLSRNMLNG-SIPLSLGKISHLEYLDLSNNKMNGTLSEI-H 395
            I+       G  S +  LDL  N ++  +          LE+L+L  N     + ++  
Sbjct: 131 KITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF----IYDVKG 186

Query: 396 FVNLTKLTWFSASGNSLILQVNPNWVPPFQLKTLLLMSCHLGPQFPSWLHSQKNLSVLDI 455
            V   KL     S N              +L  +                S   ++ + +
Sbjct: 187 QVVFAKLKTLDLSSN--------------KLAFM-----------GPEFQSAAGVTWISL 221

Query: 456 SNARISDTIPRWFWNSIFQLSGIIPESFKNFSNLEVLNLGDNEFVGKIPTWMGEGFTSLL 515
            N ++                  I ++ +   NLE  +L  N F              + 
Sbjct: 222 RNNKLVL----------------IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQ 265

Query: 516 ILILRSNKFDGFLPIQLCRLTSLQILDVANNSLSGTMPGCVNNFSAMATIDSSHQSNAMS 575
            +  ++ K       + C  T   +                +   A+   + +  S   S
Sbjct: 266 TVAKQTVKKLTGQNEEEC--TVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGS 323

Query: 576 YFEVTAYDCEVLEDASIVMKGSMVEYNSILNLVRIIDVSKNNFSGEIPMELTYLRGLQSL 635
             E                   +          R ID  K  +   I       +   +L
Sbjct: 324 ETE------------------RLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITL 365

Query: 636 NLSHNIFTGQIPENIGNLISIESLDFSTNQLS--SKISQSMSSLSFLNHLNVSNNLLTGK 693
                    Q+         ++               ++  S L  L  +      +  +
Sbjct: 366 EQKKKALDEQVSNGRRAHAELDGTLQQAVGQIELQHATEEQSPLQLLRAIVKRYEEMYVE 425

Query: 694 IPSS 697
             S 
Sbjct: 426 QQSV 429

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  108 bits (270), Expect = 8e-25
 Identities = 61/392 (15%), Positives = 116/392 (29%), Gaps = 39/392 (9%)

Query: 328 SLRTLSLDDNCISGPLPPALGDLSSLTRLDLSRNMLNGSIPLSLGKISHLEYLDLSNNKM 387
             +   + D+ +   L        ++  LDLS N L+      L   + LE L+LS+N  
Sbjct: 11  RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV- 69

Query: 388 NGTLSEI-HFVNLTKLTWFSASGNSLILQVNPNWVPPFQLKTLLLMSCHLGPQFPSWLHS 446
              L E     +L+ L     + N +        +    ++TL   + ++     S    
Sbjct: 70  ---LYETLDLESLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNISRVSCSRG-- 119

Query: 447 QKNLSVLDISNARISDTIPRWFW------------NSIFQLSGIIPESFKNFSNLEVLNL 494
            +    + ++N +I+                    N I  ++    E   +   LE LNL
Sbjct: 120 -QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVN--FAELAASSDTLEHLNL 176

Query: 495 GDNEFVGKIPTWMGEGFTSLLILILRSNKFDGFLPIQLCRLTSLQILDVANNSLSGTMPG 554
             N     +   +   F  L  L L SNK   F+  +      +  + + NN L   +  
Sbjct: 177 QYNFIY-DVKGQV--VFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEK 231

Query: 555 CVNNFSAMATIDSSH----QSNAMSYFEVTAYDCEVLEDASIVMKGSMVEYNSILNLVRI 610
            +     +   D             +F        V +     + G   E  ++  L   
Sbjct: 232 ALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHY 291

Query: 611 IDVSKNNFSGEIPMELTYLR--GLQSLNLSHNIFTGQIPENIGNLISIESLDFSTNQLSS 668
                 +        L  L+      L+   +     +     N      +D    Q  +
Sbjct: 292 GAYCCEDLPAPFADRLIALKRKEHALLSGQGSETER-LECERENQARQREIDALKEQYRT 350

Query: 669 KISQSMSSLSFLNHLNVSNNLLTGKIPSSTQL 700
            I Q          L      L  ++ +  + 
Sbjct: 351 VIDQVTLRKQAKITLEQKKKALDEQVSNGRRA 382

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 91.1 bits (226), Expect = 3e-19
 Identities = 45/445 (10%), Positives = 122/445 (27%), Gaps = 79/445 (17%)

Query: 111 PSLVDLKHLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRC 170
             L  L  L  LDL+ N  Q +          ++  L+ +    + +           + 
Sbjct: 74  LDLESLSTLRTLDLNNNYVQEL------LVGPSIETLHAANNNISRV---SCSRGQGKKN 124

Query: 171 LDLSWSEYALQVHSFSWLSGQIPNRLGNLTSLRHLDLSANKFNSTTAGWL-SKFNHLEFL 229
           + L+ ++          ++       G  + +++LDL  N+ ++     L +  + LE L
Sbjct: 125 IYLANNK----------ITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHL 174

Query: 230 SLSSNGLQGTISSIGLENLTSIKTIDLSLNFELGGPIPTSFVRLCELTSIDVSDVKLSQD 289
           +L  N +      +    L   KT+DLS N               +L  +       +  
Sbjct: 175 NLQYNFIYDVKGQVVFAKL---KTLDLSSN---------------KLAFMGPEFQSAAG- 215

Query: 290 LSQVLDILSACGASALESLVFSSSQISGHLTSQLGQFKSLRTLSLDDNCISGPLPPALGD 349
                          +  +   ++++   +   L   ++L    L  N            
Sbjct: 216 ---------------VTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDF-F 258

Query: 350 LSSLTRLDLSRNMLNGSIPLSLGKISHLEYLDLSNNKMNGTLSEIHFVNLTKLTWFSASG 409
             +     +++  +      +  + +               L       L  L     + 
Sbjct: 259 SKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCE-DLPAPFADRLIALKRKEHAL 317

Query: 410 NSL----ILQVNPNWVPPFQLKTLLLMSCHLGPQFPSWLHSQKNLSVLDISNARISDTIP 465
            S       ++        + + +  +              ++    L+           
Sbjct: 318 LSGQGSETERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKK-------- 369

Query: 466 RWFWNSIFQLSGIIPESFKNFSNLEVLNLGDNEFVGKIPTWMGEGFTSLLILILRSNKFD 525
                ++ +       +           +G  E          E  + L +L     +++
Sbjct: 370 ----KALDEQVSNGRRAHAELDGTLQQAVGQIELQHAT-----EEQSPLQLLRAIVKRYE 420

Query: 526 -GFLPIQLCRLTSLQILDVANNSLS 549
             ++  Q  +  +++  D+  +  +
Sbjct: 421 EMYVEQQSVQNNAIRDWDMYQHKET 445

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 80.3 bits (198), Expect = 7e-16
 Identities = 43/362 (11%), Positives = 106/362 (29%), Gaps = 83/362 (22%)

Query: 366 SIPLSLGKISHLEYLDLSNNKMNGTLSEIHFVNLTKLTWFSASGNSLILQVNPNWVPPFQ 425
           +I       +  +   ++++ +   L+ +   +   +     SGN               
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASL-RQSAWNVKELDLSGN--------------P 45

Query: 426 LKTLLLMSCHLGPQFPSWLHSQKNLSVLDISNARISDTIPRWFWNSIFQLSGIIPESFKN 485
           L  +            + L     L +L++S+            N +++         ++
Sbjct: 46  LSQIS----------AADLAPFTKLELLNLSS------------NVLYETL-----DLES 78

Query: 486 FSNLEVLNLGDNEFVGKIPTWMGEGFTSLLILILRSNKFDGFLPIQLCRLTSLQILDVAN 545
            S L  L+L +N    ++         S+  L   +N       +   R    + + +AN
Sbjct: 79  LSTLRTLDLNNNYV-QELLV-----GPSIETLHAANNNISR---VSCSRGQGKKNIYLAN 129

Query: 546 NSLSGTMPGCVNNFSAMATIDSSHQSNAMSYFEVTAYDCEVLEDASIVMKGSMVEYNSIL 605
           N ++          S +  +D     N +                            +  
Sbjct: 130 NKITMLRDLDEGCRSRVQYLDLKL--NEIDTVNFAELA-------------------ASS 168

Query: 606 NLVRIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQIPENIGNLISIESLDFSTNQ 665
           + +  +++  N    ++         L++L+LS N     +     +   +  +    N+
Sbjct: 169 DTLEHLNLQYNFIY-DVK-GQVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNK 225

Query: 666 LSSKISQSMSSLSFLNHLNVSNNLLTGKIP-----SSTQLQSFDASCFVGNNLCGPPLPS 720
           L   I +++     L H ++  N             + ++Q+          L G     
Sbjct: 226 LVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTV--KKLTGQNEEE 282

Query: 721 CT 722
           CT
Sbjct: 283 CT 284

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 52.2 bits (125), Expect = 5e-07
 Identities = 17/161 (10%), Positives = 39/161 (24%), Gaps = 17/161 (10%)

Query: 105 LSGN----VNPSLVDLKHLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPH 160
           L  N    +  +L   ++L H DL GN F    +  +    + ++ +         +   
Sbjct: 221 LRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQT--VKKLTGQ 278

Query: 161 QLGNLSNLRCLDLSWSEYALQVHSFSWLSGQIPNRLGNLTS--LRHLDLSANKFNSTTAG 218
                +                     L     +RL  L       L    ++       
Sbjct: 279 NEEECTVPTLGHYGAY-------CCEDLPAPFADRLIALKRKEHALLSGQGSETERLECE 331

Query: 219 WLSKFNHLEFLSLSSNGLQGTISSIGLENLTSIKTIDLSLN 259
             +       +       + T+         +  T++    
Sbjct: 332 REN-QARQREIDALKEQYR-TVIDQVTLRKQAKITLEQKKK 370

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  123 bits (312), Expect = 3e-31
 Identities = 56/300 (18%), Positives = 109/300 (36%), Gaps = 33/300 (11%)

Query: 115 DLKHLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRCLDLS 174
           +        ++ +  +   +     S  N++ L+LSG   + I    L   + L  L+LS
Sbjct: 8   NGNRYKIEKVTDSSLKQA-LASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLS 66

Query: 175 WSEYALQVHSFSWLSGQIPNRLGNLTSLRHLDLSANKFNSTTAGWLSKFNHLEFLSLSSN 234
            +           L  +  + L +L++LR LDL+ N         L     +E L  ++N
Sbjct: 67  SNV----------LY-ETLD-LESLSTLRTLDLNNNYVQE-----LLVGPSIETLHAANN 109

Query: 235 GLQGTISSIGLENLTSIKTIDLSLNFELGGPIPTSFVRLCELTSIDVSDVKLSQ-DLSQV 293
                IS +        K I L+ N ++             +  +D+   ++   + +++
Sbjct: 110 N----ISRVSCSRGQGKKNIYLANN-KITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAEL 164

Query: 294 LDILSACGASALESLVFSSSQISGHLTSQLGQFKSLRTLSLDDNCISGPLPPALGDLSSL 353
                      LE L    + I   +  Q+  F  L+TL L  N ++  + P     + +
Sbjct: 165 AASS-----DTLEHLNLQYNFIY-DVKGQV-VFAKLKTLDLSSNKLAF-MGPEFQSAAGV 216

Query: 354 TRLDLSRNMLNGSIPLSLGKISHLEYLDLSNNKMNGTLSEIHFVNLTKLTWFSASGNSLI 413
           T + L  N L   I  +L    +LE+ DL  N  +       F    ++   +      +
Sbjct: 217 TWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKL 275

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  103 bits (260), Expect = 2e-24
 Identities = 59/370 (15%), Positives = 116/370 (31%), Gaps = 85/370 (22%)

Query: 134 IPKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRCLDLSWSEYALQVHSFSWLSGQIP 193
           I +   +    +   ++ +     +     +  N++ LDLS +           LS    
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNP----------LSQISA 51

Query: 194 NRLGNLTSLRHLDLSANKFNSTTAGWLSKFNHLEFLSLSSNGLQGTISSIGLENLTSIKT 253
             L   T L  L+LS+N    T    L   + L  L L++N +Q       L    SI+T
Sbjct: 52  ADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQ------ELLVGPSIET 103

Query: 254 IDLSLNFELGGPIPTSFVRLCELTSIDVSDVKLSQDLSQVLDILSACGASALESLVFSSS 313
           +  + N                ++ +  S  +                    +++  +++
Sbjct: 104 LHAANN---------------NISRVSCSRGQG------------------KKNIYLANN 130

Query: 314 QISGHLTSQLGQFKSLRTLSLDDNCISG-PLPPALGDLSSLTRLDLSRNMLNGSIPLSLG 372
           +I+       G    ++ L L  N I             +L  L+L  N +   +   + 
Sbjct: 131 KITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQVV 189

Query: 373 KISHLEYLDLSNNKMNGTLSEIH--FVNLTKLTWFSASGNSLILQVNPNWVPPFQLKTLL 430
             + L+ LDLS+NK    L+ +   F +   +TW S   N L+                 
Sbjct: 190 -FAKLKTLDLSSNK----LAFMGPEFQSAAGVTWISLRNNKLV----------------- 227

Query: 431 LMSCHLGPQFPSWLHSQKNLSVLDISNARISDTIPRWFWNSIFQLSGIIPESFKNFSNLE 490
                        L   +NL   D+          R F++   ++  +  ++ K  +   
Sbjct: 228 --------LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQN 279

Query: 491 VLNLGDNEFV 500
                     
Sbjct: 280 EEECTVPTLG 289

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 94.3 bits (235), Expect = 4e-21
 Identities = 52/360 (14%), Positives = 113/360 (31%), Gaps = 79/360 (21%)

Query: 327 KSLRTLSLDDNCISGPLPPALGDLSSLTRLDLSRNMLNGSIPLSLGKISHLEYLDLSNNK 386
              +   + D+ +   L        ++  LDLS N L+      L   + LE L+LS+N 
Sbjct: 10  NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV 69

Query: 387 MNGTLSEI-HFVNLTKLTWFSASGNSLILQVNPNWVPPFQLKTLLLMSCHLGPQFPSWLH 445
               L E     +L+ L     + N +        +    ++TL   + ++     S   
Sbjct: 70  ----LYETLDLESLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNISRVSCSRG- 119

Query: 446 SQKNLSVLDISNARISDTIPRWFWNSIFQLSGIIPESFKNFSNLEVLNLGDNEFVGKIPT 505
             +    + ++N            N   +++ +        S ++ L+L  NE       
Sbjct: 120 --QGKKNIYLAN------------N---KITMLRDLDEGCRSRVQYLDLKLNEIDTVNFA 162

Query: 506 WMGEGFTSLLILILRSNKFDGFLPIQLCRLTSLQILDVANNSLSGTMPGCVNNFSAMATI 565
            +     +L  L L+ N     +  Q+     L+ LD+++N L+  M     + +     
Sbjct: 163 ELAASSDTLEHLNLQYNFIYD-VKGQVV-FAKLKTLDLSSNKLA-FMGPEFQSAA----- 214

Query: 566 DSSHQSNAMSYFEVTAYDCEVLEDASIVMKGSMVEYNSILNLVRIIDVSKNNFSGEIPME 625
                                                    +   I +  N     I   
Sbjct: 215 ----------------------------------------GV-TWISLRNNKLV-LIEKA 232

Query: 626 LTYLRGLQSLNLSHN-IFTGQIPENIGNLISIESLDFSTNQLSSKISQSMSSLSFLNHLN 684
           L + + L+  +L  N    G + +       ++++   T +  +  ++   ++  L H  
Sbjct: 233 LRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYG 292

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 90.8 bits (226), Expect = 5e-20
 Identities = 52/267 (19%), Positives = 90/267 (33%), Gaps = 30/267 (11%)

Query: 303 SALESLVFSSSQISGHLTSQLGQFKSLRTLSLDDNCISGPLPPALGDLSSLTRLDLSRNM 362
           +  +    + S +   L S      +++ L L  N +S      L   + L  L+LS N+
Sbjct: 10  NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV 69

Query: 363 LNGSIPLSLGKISHLEYLDLSNNKMNGTLSEIHFVNLTKLTWFSASGNSLILQVNPNWVP 422
           L       L  +S L  LDL+NN     + E+       +    A+ N+ I +V+ +   
Sbjct: 70  LY-ETL-DLESLSTLRTLDLNNNY----VQELL--VGPSIETLHAANNN-ISRVSCSRGQ 120

Query: 423 PFQLKTLLLMSCHLGPQFPSWLHSQKNLSVLDISNARISDTIPRWFWNSIFQLSGIIPES 482
               K + L +  +          +  +  LD+    I  T+                E 
Sbjct: 121 --GKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEID-TVN-------------FAEL 164

Query: 483 FKNFSNLEVLNLGDNEFVGKIPTWMGEGFTSLLILILRSNKFDGFLPIQLCRLTSLQILD 542
             +   LE LNL  N     +       F  L  L L SNK   F+  +      +  + 
Sbjct: 165 AASSDTLEHLNLQYNFIY-DVKG--QVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWIS 220

Query: 543 VANNSLSGTMPGCVNNFSAMATIDSSH 569
           + NN L   +   +     +   D   
Sbjct: 221 LRNNKLV-LIEKALRFSQNLEHFDLRG 246

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 82.0 bits (203), Expect = 4e-17
 Identities = 34/225 (15%), Positives = 81/225 (36%), Gaps = 35/225 (15%)

Query: 479 IPESFKNFSNLEVLNLGDNEFVGKIPTWMGEGFTSLLILILRSNKFDGFLPIQLCRLTSL 538
           I E  +N +  ++  + D+    +    + +   ++  L L  N         L   T L
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLK-QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 539 QILDVANNSLSGTMPGCVNNFSAMATIDSSHQSNAMSYFEVTAYDCEVLEDASIVMKGSM 598
           ++L++++N L       + + S + T+D ++  N +                        
Sbjct: 61  ELLNLSSNVL--YETLDLESLSTLRTLDLNN--NYVQEL--------------------- 95

Query: 599 VEYNSILNLVRIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQIPENIGNLISIES 658
                +   +  +  + NN S  +       +G +++ L++N  T     + G    ++ 
Sbjct: 96  ----LVGPSIETLHAANNNIS-RVSCSR--GQGKKNIYLANNKITMLRDLDEGCRSRVQY 148

Query: 659 LDFSTNQLSS-KISQSMSSLSFLNHLNVSNNLLTGKIPSSTQLQS 702
           LD   N++ +   ++  +S   L HLN+  N +   +        
Sbjct: 149 LDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQVVFAK 192

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 81.6 bits (202), Expect = 6e-17
 Identities = 42/362 (11%), Positives = 104/362 (28%), Gaps = 83/362 (22%)

Query: 366 SIPLSLGKISHLEYLDLSNNKMNGTLSEIHFVNLTKLTWFSASGNSLILQVNPNWVPPFQ 425
           +I       +  +   ++++ +   L+ +   +   +     SGN L      + +    
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASL-RQSAWNVKELDLSGNPL------SQISAAD 53

Query: 426 LKTLLLMSCHLGPQFPSWLHSQKNLSVLDISNARISDTIPRWFWNSIFQLSGIIPESFKN 485
           L                       L +L++S+  + +                     ++
Sbjct: 54  LAPF------------------TKLELLNLSSNVLYE-----------------TLDLES 78

Query: 486 FSNLEVLNLGDNEFVGKIPTWMGEGFTSLLILILRSNKFDGFLPIQLCRLTSLQILDVAN 545
            S L  L+L +N    ++         S+  L   +N       +   R    + + +AN
Sbjct: 79  LSTLRTLDLNNNYV-QELLV-----GPSIETLHAANNNISR---VSCSRGQGKKNIYLAN 129

Query: 546 NSLSGTMPGCVNNFSAMATIDSSHQSNAMSYFEVTAYDCEVLEDASIVMKGSMVEYNSIL 605
           N ++          S +  +D     N +                            +  
Sbjct: 130 NKITMLRDLDEGCRSRVQYLDLKL--NEIDTVNFAELA-------------------ASS 168

Query: 606 NLVRIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQIPENIGNLISIESLDFSTNQ 665
           + +  +++  N    ++         L++L+LS N     +     +   +  +    N+
Sbjct: 169 DTLEHLNLQYNFIY-DVK-GQVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNK 225

Query: 666 LSSKISQSMSSLSFLNHLNVSNNLLTGKIP-----SSTQLQSFDASCFVGNNLCGPPLPS 720
           L   I +++     L H ++  N             + ++Q+          L G     
Sbjct: 226 LVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTV--KKLTGQNEEE 282

Query: 721 CT 722
           CT
Sbjct: 283 CT 284

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 81.6 bits (202), Expect = 7e-17
 Identities = 42/278 (15%), Positives = 83/278 (29%), Gaps = 80/278 (28%)

Query: 111 PSLVDLKHLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRC 170
             L  L  L  LDL+ N  Q       L    ++  L+ +    + +           + 
Sbjct: 74  LDLESLSTLRTLDLNNNYVQ------ELLVGPSIETLHAANNNISRV---SCSRGQGKKN 124

Query: 171 LDLSWSEYALQVHSFSWLSGQIPNRLGNLTSLRHLDLSANKFNSTTAGWL-SKFNHLEFL 229
           + L          + + ++       G  + +++LDL  N+ ++     L +  + LE L
Sbjct: 125 IYL----------ANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHL 174

Query: 230 SLSSNGLQGTISSIGLENLTSIKTIDLSLNFELGGPIPTSFVRLCELTSIDVSDVKLSQD 289
           +L  N +      +    L   KT+DLS N               +L  +          
Sbjct: 175 NLQYNFIYDVKGQVVFAKL---KTLDLSSN---------------KLAFMG--------- 207

Query: 290 LSQVLDILSACGASALESLVFSSSQISGHLTSQLGQFKSLRTLSLDDNCISGPLPPALGD 349
                                           +      +  +SL +N +   +  AL  
Sbjct: 208 -------------------------------PEFQSAAGVTWISLRNNKLVL-IEKALRF 235

Query: 350 LSSLTRLDLSRNMLN-GSIPLSLGKISHLEYLDLSNNK 386
             +L   DL  N  + G++     K   ++ +     K
Sbjct: 236 SQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVK 273

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 70.8 bits (174), Expect = 3e-13
 Identities = 27/156 (17%), Positives = 48/156 (30%), Gaps = 14/156 (8%)

Query: 112 SLVDLKHLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRCL 171
                  + +LDL  N+   +   +   S   L +LNL       +        + L+ L
Sbjct: 139 DEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG--QVVFAKLKTL 196

Query: 172 DLSWSEYALQVHSFSWLSGQIPNRLGNLTSLRHLDLSANKFNSTTAGWLSKFNHLEFLSL 231
           DLS ++          L+  +     +   +  + L  NK        L    +LE   L
Sbjct: 197 DLSSNK----------LA-FMGPEFQSAAGVTWISLRNNKLVLIEKA-LRFSQNLEHFDL 244

Query: 232 SSNGLQGTISSIGLENLTSIKTIDLSLNFELGGPIP 267
             NG               ++T+      +L G   
Sbjct: 245 RGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNE 280

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  124 bits (313), Expect = 3e-30
 Identities = 70/303 (23%), Positives = 114/303 (37%), Gaps = 21/303 (6%)

Query: 112 SLVDLKHLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRCL 171
                 HL  L+L+ N    +  P    +L NLR L L       I       LSNL  L
Sbjct: 51  EFASFPHLEELELNENIVSAVE-PGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKL 109

Query: 172 DLSWSE-YALQVHSFSWLSGQIPNRLGNLTSLRHLDLSANKFNSTTAGWLSKFNHLEFLS 230
           D+S ++   L  + F            +L +L+ L++  N     +    S  N LE L+
Sbjct: 110 DISENKIVILLDYMFQ-----------DLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLT 158

Query: 231 LSSNGLQGTISSIGLENLTSIKTIDLSLNFELGGPIPTSFVRLCELTSIDVSDVKLSQDL 290
           L    L  +I +  L +L  +  + L     +      SF RL  L  +++S       +
Sbjct: 159 LEKCNLT-SIPTEALSHLHGLIVLRLRHL-NINAIRDYSFKRLYRLKVLEISHWPYLDTM 216

Query: 291 SQVLDILSACGASALESLVFSSSQISGHLTSQLGQFKSLRTLSLDDNCISGPLPPALGDL 350
           +      +      L SL  +   ++      +     LR L+L  N IS      L +L
Sbjct: 217 TP-----NCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHEL 271

Query: 351 SSLTRLDLSRNMLNGSIPLSLGKISHLEYLDLSNNKMNGTLSEIHFVNLTKLTWFSASGN 410
             L  + L    L    P +   +++L  L++S N++  TL E  F ++  L       N
Sbjct: 272 LRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLT-TLEESVFHSVGNLETLILDSN 330

Query: 411 SLI 413
            L 
Sbjct: 331 PLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  116 bits (292), Expect = 1e-27
 Identities = 64/383 (16%), Positives = 132/383 (34%), Gaps = 65/383 (16%)

Query: 120 THLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRCLDLSWSE-Y 178
             +      F    +P+ +      R L+L       +   +  +  +L  L+L+ +   
Sbjct: 14  RAVLCHRKRFV--AVPEGI--PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVS 69

Query: 179 ALQVHSFSWLSGQIPNRLGNLTSLRHLDLSANKFNSTTAGWLSKFNHLEFLSLSSNGLQG 238
           A++  +F+           NL +LR L L +N+      G  +  ++L  L +S N +  
Sbjct: 70  AVEPGAFN-----------NLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIV- 117

Query: 239 TISSIGLENLTSIKTIDLSLNFELGGPIPTSFVRLCELTSIDVSDVKLSQDLSQVLDILS 298
            +     ++L ++K++++  N               +L  I                   
Sbjct: 118 ILLDYMFQDLYNLKSLEVGDN---------------DLVYISHRAFS------------- 149

Query: 299 ACGASALESLVFSSSQISGHLTSQLGQFKSLRTLSLDDNCISGPLPPALGDLSSLTRLDL 358
             G ++LE L      ++   T  L     L  L L    I+     +   L  L  L++
Sbjct: 150 --GLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEI 207

Query: 359 SRNMLNGSIPLSLGKISHLEYLDLSNNKMNGTLSEIHFVNLTKLTWFSASGNSLILQVNP 418
           S      ++  +     +L  L +++  +   +  +   +L  L + + S N  I  +  
Sbjct: 208 SHWPYLDTMTPNCLYGLNLTSLSITHCNLT-AVPYLAVRHLVYLRFLNLSYNP-ISTIEG 265

Query: 419 NW-VPPFQLKTLLLMSCHLGPQFPSWLHSQKNLSVLDISNARISDTIPRWFWNSIFQLSG 477
           +      +L+ + L+   L    P        L VL++S  +++ T+             
Sbjct: 266 SMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLT-TLE------------ 312

Query: 478 IIPESFKNFSNLEVLNLGDNEFV 500
                F +  NLE L L  N   
Sbjct: 313 --ESVFHSVGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 98.6 bits (246), Expect = 7e-22
 Identities = 70/351 (19%), Positives = 119/351 (33%), Gaps = 69/351 (19%)

Query: 343 LPPALGDLSSLTRLDLSRNMLNGSIPLSLGKISHLEYLDLSNNKMNGTLSEIHFVNLTKL 402
           +P  +   +    LDL +N +            HLE L+L+ N +   +    F NL  L
Sbjct: 26  VPEGI--PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIV-SAVEPGAFNNLFNL 82

Query: 403 TWFSASGNSLILQVNPNWVPPFQLKTLLLMSCHLGPQFPSWLHSQKNLSVLDISNARISD 462
                  N L        +P      L                   NL+ LDIS  +I  
Sbjct: 83  RTLGLRSNRL------KLIPLGVFTGL------------------SNLTKLDISENKIVI 118

Query: 463 TIPRWFWNSIFQLSGIIPESFKNFSNLEVLNLGDNEFVGKIPTWMGEGFTSLLILILRSN 522
                          ++   F++  NL+ L +GDN+ V  I      G  SL  L L   
Sbjct: 119 ---------------LLDYMFQDLYNLKSLEVGDNDLV-YISHRAFSGLNSLEQLTLEKC 162

Query: 523 KFDGFLPIQLCRLTSLQILDVANNSLSGTMPGCVNNFSAMATIDSSHQSNAMSYFEVTAY 582
                    L  L  L +L + + +++            +  ++ SH    +        
Sbjct: 163 NLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISH-WPYLDTMTPNCL 221

Query: 583 DCEVLEDASIVMKGSMVEYNSILNLVRIIDVSKNNFSGEIPME-LTYLRGLQSLNLSHNI 641
               L                 L++      +  N +  +P   + +L  L+ LNLS+N 
Sbjct: 222 YGLNLTS---------------LSI------THCNLT-AVPYLAVRHLVYLRFLNLSYNP 259

Query: 642 FTGQIPENI-GNLISIESLDFSTNQLSSKISQSMSSLSFLNHLNVSNNLLT 691
            +  I  ++   L+ ++ +     QL+     +   L++L  LNVS N LT
Sbjct: 260 IS-TIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLT 309

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 79.0 bits (195), Expect = 2e-15
 Identities = 50/278 (17%), Positives = 100/278 (35%), Gaps = 43/278 (15%)

Query: 423 PFQLKTLLLMSCHLGPQFPSWLHSQKNLSVLDISNARISDTIPRWFWNSIFQLSGIIPES 482
           P + + L L    +         S  +L  L+++   +S                + P +
Sbjct: 31  PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSA---------------VEPGA 75

Query: 483 FKNFSNLEVLNLGDNEFVGKIPTWMGEGFTSLLILILRSNKFDGFLPIQLCRLTSLQILD 542
           F N  NL  L L  N     IP  +  G ++L  L +  NK    L      L +L+ L+
Sbjct: 76  FNNLFNLRTLGLRSNRLK-LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLE 134

Query: 543 VANNSLSGTMPGCVNNFSAMATIDSSHQSNAMSYFEVTAYDCEVLEDASIVMKGSMVEYN 602
           V +N L        +  +++  +                     LE  ++    + +   
Sbjct: 135 VGDNDLVYISHRAFSGLNSLEQLT--------------------LEKCNL----TSIPTE 170

Query: 603 SILNLV--RIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQIPENIGNLISIESLD 660
           ++ +L    ++ +   N +         L  L+ L +SH  +   +  N    +++ SL 
Sbjct: 171 ALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLS 230

Query: 661 FSTNQLSSKISQSMSSLSFLNHLNVSNNLLTGKIPSST 698
            +   L++    ++  L +L  LN+S N ++  I  S 
Sbjct: 231 ITHCNLTAVPYLAVRHLVYLRFLNLSYNPIS-TIEGSM 267

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 62.0 bits (151), Expect = 3e-10
 Identities = 30/128 (23%), Positives = 52/128 (40%), Gaps = 13/128 (10%)

Query: 111 PSLVDLKHLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRC 170
           P+ +   +LT L ++  +   +     +  L  LR+LNLS    + I    L  L  L+ 
Sbjct: 218 PNCLYGLNLTSLSITHCNLTAVP-YLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQE 276

Query: 171 LDLSWSE-YALQVHSFSWLSGQIPNRLGNLTSLRHLDLSANKFNSTTAGWLSKFNHLEFL 229
           + L   +   ++ ++F             L  LR L++S N+  +          +LE L
Sbjct: 277 IQLVGGQLAVVEPYAFR-----------GLNYLRVLNVSGNQLTTLEESVFHSVGNLETL 325

Query: 230 SLSSNGLQ 237
            L SN L 
Sbjct: 326 ILDSNPLA 333

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  122 bits (308), Expect = 1e-29
 Identities = 103/588 (17%), Positives = 179/588 (30%), Gaps = 142/588 (24%)

Query: 109 VNPSLVDLKHLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNL 168
           +NP  V    L       ++     +P    ++K+      + +E+    P   G    +
Sbjct: 3   INPRNVSNTFLQEPLRHSSNLT--EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREM 60

Query: 169 RCLDLSWSEYALQVHSFSWLSGQIPNRLGNLTSLRHLDLSANKFNSTTAGWLSKFNHLEF 228
               L                     R         L+L+    +S          HLE 
Sbjct: 61  AVSRL---------------------RDCLDRQAHELELNNLGLSSLP----ELPPHLES 95

Query: 229 LSLSSNGLQGTISSIGLENLTSIKTIDLSLNFELGGPIPTSFVRLCELTSIDVSDVKLSQ 288
           L  S N L   +     ++L S+   + +L   L    P        L  + VS+ +L  
Sbjct: 96  LVASCNSLT-ELPE-LPQSLKSLLVDNNNLK-ALSDLPPL-------LEYLGVSNNQLE- 144

Query: 289 DLSQVLDILSACGASALESLVFSSSQISGHLTSQLGQFKSLRTLSLDDNCISGPLPPALG 348
                  +     +S L+ +   ++ +   L        SL  ++  +N +     P L 
Sbjct: 145 ------KLPELQNSSFLKIIDVDNNSLK-KLPDLPP---SLEFIAAGNNQLEEL--PELQ 192

Query: 349 DLSSLTRLDLSRNMLNGSIPLSLGKISHLEYLDLSNNKMNGTLSEI-HFVNLTKLTWFSA 407
           +L  LT +    N L   +P        LE +   NN     L E+    NL  LT   A
Sbjct: 193 NLPFLTAIYADNNSLK-KLPDLPLS---LESIVAGNNI----LEELPELQNLPFLTTIYA 244

Query: 408 SGNSLILQVNPNWVPPFQLKTLLLMSCHLGPQFPSWLHSQKNLSVLDISNARISDTIPRW 467
             N L  +  P+  P   L+ L +   +L    P    S   L V +   + +S+  P  
Sbjct: 245 DNNLL--KTLPDLPP--SLEALNVRDNYLT-DLPELPQSLTFLDVSENIFSGLSELPP-- 297

Query: 468 FWNSIFQLSGIIPESFKNFSNLEVLNLGDNEFVGKIPTWMGEGFTSLLILILRSNKFDGF 527
                               NL  LN   NE    +         SL  L + +NK    
Sbjct: 298 --------------------NLYYLNASSNEIR-SLCDLP----PSLEELNVSNNKLI-E 331

Query: 528 LPIQLCRLTSLQILDVANNSLSGTMPGCVNNFSAMATIDSSHQSNAMSYFEVTAYDCEVL 587
           LP        L+ L  + N L+               +    Q+             + L
Sbjct: 332 LPALPP---RLERLIASFNHLA--------------EVPELPQN------------LKQL 362

Query: 588 EDASIVMKGSMVEYNSILNLVRII----DVSKNNFSGEIPMELTYLRGLQSLNLSHNIFT 643
                      VEYN +     I     D+  N+   E+P        L+ L++  N   
Sbjct: 363 H----------VEYNPLREFPDIPESVEDLRMNSHLAEVPELPQ---NLKQLHVETNPLR 409

Query: 644 GQIPENIGNLISIESLDFSTNQLSSKISQSMSSLSFLNHLNVSNNLLT 691
            + P+   ++   E L  ++ ++      +  +   L      ++   
Sbjct: 410 -EFPDIPESV---EDLRMNSERVVDPYEFAHETTDKLEDDVFEHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 97.8 bits (244), Expect = 1e-21
 Identities = 85/490 (17%), Positives = 148/490 (30%), Gaps = 122/490 (24%)

Query: 225 HLEFLSLSSNGLQGTISSIGLENLTSIKTIDLSLNFELGGPIPTSFVRLCELTSIDVSDV 284
            L+     S+ L          N+ S      + + E     P       E+        
Sbjct: 12  FLQEPLRHSSNLTEMPVEAE--NVKSKTEYYNAWS-EWERNAPPGNGEQREMAVSR---- 64

Query: 285 KLSQDLSQVLDILSACGASALESLVFSSSQISGHLTSQLGQFKSLRTLSLDDNCISGPLP 344
                       L  C       L  ++  +S  L         L +L    N ++  LP
Sbjct: 65  ------------LRDCLDRQAHELELNNLGLS-SLPELPPH---LESLVASCNSLT-ELP 107

Query: 345 PALGDLSSLTRLDLSRNMLNGSIPLSLGKISHLEYLDLSNNKMNGTLSEIHFVNLTKLTW 404
                L SL   + +   L+   P        LEYL +SNN++   L E+   N + L  
Sbjct: 108 ELPQSLKSLLVDNNNLKALSDLPP-------LLEYLGVSNNQLE-KLPELQ--NSSFLKI 157

Query: 405 FSASGNSLILQVNPNWVPPFQLKTLLLMSCHLGPQFPSWLHSQKNLSVLDISNARISDTI 464
                NSL                          + P       +L  +   N ++ +  
Sbjct: 158 IDVDNNSL-------------------------KKLPDLP---PSLEFIAAGNNQLEE-- 187

Query: 465 PRWFWNSIFQLSGIIPESFKNFSNLEVLNLGDNEFVGKIPTWMGEGFTSLLILILRSNKF 524
                         +PE  +N   L  +   +N    K+P    +   SL  ++  +N  
Sbjct: 188 --------------LPE-LQNLPFLTAIYADNNSLK-KLP----DLPLSLESIVAGNNIL 227

Query: 525 DGFLPIQLCRLTSLQILDVANNSLSGTMPGCVNNFSAMATIDSSHQSNAMSYFEVTAYDC 584
           +  LP +L  L  L  +   NN L  T+P    +      ++     N ++         
Sbjct: 228 E-ELP-ELQNLPFLTTIYADNNLLK-TLPDLPPSLE---ALNVRD--NYLTDLPELPQSL 279

Query: 585 EVLEDASIVMKGSMVEYNSILNL------VRIIDVSKNNFSGEIPMELTYLRGLQSLNLS 638
             L+          V  N    L      +  ++ S N     +         L+ LN+S
Sbjct: 280 TFLD----------VSENIFSGLSELPPNLYYLNASSNEIR-SLCDLPP---SLEELNVS 325

Query: 639 HNIFTGQIPENIGNLISIESLDFSTNQLSSKISQSMSSLSFLNHLNVSNNLLTGKIPSS- 697
           +N    ++P     L   E L  S N L+  + +   +L     L+V  N L  + P   
Sbjct: 326 NNKLI-ELPALPPRL---ERLIASFNHLAE-VPELPQNLK---QLHVEYNPLR-EFPDIP 376

Query: 698 TQLQSFDASC 707
             ++    + 
Sbjct: 377 ESVEDLRMNS 386

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 86.2 bits (214), Expect = 8e-18
 Identities = 73/403 (18%), Positives = 143/403 (35%), Gaps = 76/403 (18%)

Query: 325 QFKSLRTLSLDDNCISGPLPPALGDLSSLTRLDLSRNMLNGSIPLSLGKISHLEYLDLSN 384
               L+      + ++  +P    ++ S T    + +    + P   G+   +    L +
Sbjct: 9   SNTFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRD 67

Query: 385 NKMNGTLSEIHFVNLTKLTWFSASGNSLILQVNPNWVPP--FQLKTLLLMSCHLGPQFPS 442
                           +      +   L      + +P     L++L+     L  + P 
Sbjct: 68  CL------------DRQAHELELNNLGL------SSLPELPPHLESLVASCNSLT-ELPE 108

Query: 443 WLHSQKNLSVLDISNARISDTIP-----RWFWNSIFQLSGIIPESFKNFSNLEVLNLGDN 497
              S K+L V + +   +SD  P         N + +L        +N S L+++++ +N
Sbjct: 109 LPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLP-----ELQNSSFLKIIDVDNN 163

Query: 498 EFVGKIPTWMGEGFTSLLILILRSNKFDGFLPIQLCRLTSLQILDVANNSLSGTMPGCVN 557
               K+P    +   SL  +   +N+ +  LP +L  L  L  +   NNSL   +P    
Sbjct: 164 SLK-KLP----DLPPSLEFIAAGNNQLE-ELP-ELQNLPFLTAIYADNNSLK-KLPDLPL 215

Query: 558 NFSAMATIDSSHQSNAMSYFEVTAYDCEVLEDASIVMKGSMVEYNSILNL------VRII 611
           +     +I + +  N +        +   L            + N +  L      +  +
Sbjct: 216 SLE---SIVAGN--NILEELPELQ-NLPFLTTIYA-------DNNLLKTLPDLPPSLEAL 262

Query: 612 DVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQIPENIGNLISIESLDFSTNQLSSKIS 671
           +V  N  + ++P     L  L       +     + E   NL     L+ S+N++ S + 
Sbjct: 263 NVRDNYLT-DLPELPQSLTFLDVSENIFS----GLSELPPNL---YYLNASSNEIRS-LC 313

Query: 672 QSMSSLSFLNHLNVSNNLLTGKIPSS-TQLQSFDASCFVGNNL 713
               SL     LNVSNN L  ++P+   +L+   AS    N+L
Sbjct: 314 DLPPSLE---ELNVSNNKLI-ELPALPPRLERLIAS---FNHL 349

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 63.9 bits (156), Expect = 8e-11
 Identities = 42/239 (17%), Positives = 85/239 (35%), Gaps = 33/239 (13%)

Query: 479 IPESFKNFSNLEVLNLGDNEFVGKIPTWMGEGFTSLLILILRSNKFDGFLPIQLCRLTSL 538
           +P   +N  +        +E+    P   GE             +      ++ C     
Sbjct: 26  MPVEAENVKSKTEYYNAWSEWERNAPPGNGE------------QREMAVSRLRDCLDRQA 73

Query: 539 QILDVANNSLSGTMPGCVNNFSAMATIDSSHQSNAMSYFEVTAYDCEVLEDASIVMKGSM 598
             L++ N  LS ++P    +     ++ +S   N+++         + L   +     ++
Sbjct: 74  HELELNNLGLS-SLPELPPHLE---SLVASC--NSLTELPELPQSLKSLLVDNN----NL 123

Query: 599 VEYNSILNLVRIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQIPENIGNLISIES 658
              + +  L+  + VS N    ++P EL     L+ +++ +N    ++P+   +L   E 
Sbjct: 124 KALSDLPPLLEYLGVSNNQLE-KLP-ELQNSSFLKIIDVDNNSLK-KLPDLPPSL---EF 177

Query: 659 LDFSTNQLSSKISQSMSSLSFLNHLNVSNNLLTGKIPSSTQLQSFDASCFVGNNLCGPP 717
           +    NQL       + +L FL  +   NN L         L+S  A     N L   P
Sbjct: 178 IAAGNNQLEE--LPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAG---NNILEELP 231

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 51.9 bits (125), Expect = 6e-07
 Identities = 37/224 (16%), Positives = 65/224 (29%), Gaps = 59/224 (26%)

Query: 510 GFTSLLILILRSNKFDGFLPIQLCRLTSLQILDVANNSLSGTMPGCVNNFSAMATIDSSH 569
             T L   +  S+     +P++   + S      A +      P        MA      
Sbjct: 9   SNTFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLR- 66

Query: 570 QSNAMSYFEVTAYDCEVLEDASIVMKGSMVEYNSILNLVRIIDVSKNNFSGEIPMELTYL 629
                                           + +      ++++    S  +P    +L
Sbjct: 67  --------------------------------DCLDRQAHELELNNLGLS-SLPELPPHL 93

Query: 630 RGLQSLNLSHNIFTGQIPENIGNLISIESLDFSTNQLSSKISQ---------------SM 674
              +SL  S N  T ++PE   +L S+   + +   LS                     +
Sbjct: 94  ---ESLVASCNSLT-ELPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLPEL 149

Query: 675 SSLSFLNHLNVSNNLLTGKIPSS-TQLQSFDASCFVGNNLCGPP 717
            + SFL  ++V NN L  K+P     L+   A     N L   P
Sbjct: 150 QNSSFLKIIDVDNNSLK-KLPDLPPSLEFIAAG---NNQLEELP 189

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  119 bits (301), Expect = 3e-29
 Identities = 74/371 (19%), Positives = 129/371 (34%), Gaps = 45/371 (12%)

Query: 110 NPSLVDLKHLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLR 169
               + L +   +    +  + +     L S + +  LNL+  +   I  +       ++
Sbjct: 38  GFEDITLNNQKIVTFKNSTMRKLP-AALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQ 96

Query: 170 CLDLSWSE-YALQVHSFSWLSGQIPNRLGNLTSLRHLDLSANKFNSTTAGWLSKFNHLEF 228
            L + ++    L  H F            N+  L  L L  N  +S   G       L  
Sbjct: 97  KLYMGFNAIRYLPPHVFQ-----------NVPLLTVLVLERNDLSSLPRGIFHNTPKLTT 145

Query: 229 LSLSSNGLQGTISSIGLENLTSIKTIDLSLNFELGGPIPT-SFVRLCELTSIDVSDVKLS 287
           LS+S+N L+  I     +  TS++ + LS N      +       +  L   +VS   LS
Sbjct: 146 LSMSNNNLE-RIEDDTFQATTSLQNLQLSSN-----RLTHVDLSLIPSLFHANVSYNLLS 199

Query: 288 QDLSQVLDILSACGASALESLVFSSSQISGHLTSQLGQFKSLRTLSLDDNCISGPLPPAL 347
                     +     A+E L  S + I+     +      L  L L  N ++      L
Sbjct: 200 ----------TLAIPIAVEELDASHNSIN---VVRGPVNVELTILKLQHNNLTD--TAWL 244

Query: 348 GDLSSLTRLDLSRNMLNGSIPLSLGKISHLEYLDLSNNKMNGTLSEIH--FVNLTKLTWF 405
            +   L  +DLS N L   +     K+  LE L +SNN+    L  ++     +  L   
Sbjct: 245 LNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR----LVALNLYGQPIPTLKVL 300

Query: 406 SASGNSLILQVNPNWVPPFQLKTLLLMSCHLGPQFPSWLHSQKNLSVLDISNARISDTIP 465
             S N  +L V  N     +L+ L L    +     S  H    L  L +S+        
Sbjct: 301 DLSHN-HLLHVERNQPQFDRLENLYLDHNSIVTLKLSTHH---TLKNLTLSHNDWDCNSL 356

Query: 466 RWFWNSIFQLS 476
           R  + ++ + +
Sbjct: 357 RALFRNVARPA 367

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  110 bits (277), Expect = 4e-26
 Identities = 64/417 (15%), Positives = 137/417 (32%), Gaps = 78/417 (18%)

Query: 134 IPKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRCLDLSWSEYALQVHSFSWLSGQIP 193
           I   L        +++           +   L+N + +    S           +     
Sbjct: 13  IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNST----------MRKLPA 62

Query: 194 NRLGNLTSLRHLDLSANKFNSTTAGWLSKFNHLEFLSLSSNGLQGTISSIGLENLTSIKT 253
             L +   +  L+L+  +         +  + ++ L +  N ++  +     +N+  +  
Sbjct: 63  ALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTV 121

Query: 254 IDLSLNFELGGPIPTSFVRLCELTSIDVSDVKLSQDLSQVLDILSACGASALESLVFSSS 313
           + L  N +L       F    +LT++ +S+  L +     ++  +    ++L++L  SS+
Sbjct: 122 LVLERN-DLSSLPRGIFHNTPKLTTLSMSNNNLER-----IEDDTFQATTSLQNLQLSSN 175

Query: 314 QISGHLTSQLGQFKSLRTLSLDDNCISGPLPPALGDLSSLTRLDLSRNMLNGSIPLSLGK 373
           +++      L    SL   ++  N +S      L    ++  LD S N +N    +    
Sbjct: 176 RLT---HVDLSLIPSLFHANVSYNLLS-----TLAIPIAVEELDASHNSINV---VRGPV 224

Query: 374 ISHLEYLDLSNNKMNGTLSEIH-FVNLTKLTWFSASGNSLILQVNPNWVPPFQLKTLLLM 432
              L  L L +N     L++    +N   L     S N              +L+ ++  
Sbjct: 225 NVELTILKLQHNN----LTDTAWLLNYPGLVEVDLSYN--------------ELEKIM-- 264

Query: 433 SCHLGPQFPSWLHSQKNLSVLDISNARISDTIPRWFWNSIFQLSGIIPESFKNFSNLEVL 492
                          + L  L ISN R+                  +    +    L+VL
Sbjct: 265 --------YHPFVKMQRLERLYISNNRLVA----------------LNLYGQPIPTLKVL 300

Query: 493 NLGDNEFVGKIPTWMGEGFTSLLILILRSNKFDGFLPIQLCRLTSLQILDVANNSLS 549
           +L  N  +  +       F  L  L L  N       ++L    +L+ L +++N   
Sbjct: 301 DLSHNHLL-HVERNQP-QFDRLENLYLDHNSIV---TLKLSTHHTLKNLTLSHNDWD 352

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 99.0 bits (247), Expect = 2e-22
 Identities = 67/424 (15%), Positives = 130/424 (30%), Gaps = 66/424 (15%)

Query: 266 IPTSFVRLCELTSIDVSDVKLSQDLSQVLDILSACGASALESLVFSSSQISGHLTSQLGQ 325
           I ++    C        DV +      V         +  + + F +S +     + L  
Sbjct: 13  IDSNLQYDCVF-----YDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDS 67

Query: 326 FKSLRTLSLDDNCISGPLPPALGDLSSLTRLDLSRNMLNGSIPLSLGKISHLEYLDLSNN 385
           F+ +  L+L+D  I      A     ++ +L +  N +    P     +  L  L L  N
Sbjct: 68  FRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERN 127

Query: 386 KMNGTLSEIHFVNLTKLTWFSASGNSLILQVNPNWVPPFQLKTLLLMSCHLGPQFPSWLH 445
            ++ +L    F N  KLT  S S N+L        +     +                  
Sbjct: 128 DLS-SLPRGIFHNTPKLTTLSMSNNNL------ERIEDDTFQAT---------------- 164

Query: 446 SQKNLSVLDISNARISDTIPRWFWN-SIFQLSGIIPESFKNFSNLEVLNLGDNEFVGKIP 504
              +L  L +S+ R++        +     +S  +  +      +E L+   N     I 
Sbjct: 165 --TSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHN----SIN 218

Query: 505 TWMGEGFTSLLILILRSNKFDGFLPIQLCRLTSLQILDVANNSLSGTMPGCVNNFSAMAT 564
              G     L IL L+ N         L     L  +D++ N L   M         +  
Sbjct: 219 VVRGPVNVELTILKLQHNNLTD-TA-WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLER 276

Query: 565 IDSSHQSNAMSYFEVTAYDCEVLEDASIVMKGSMVEYNSILNLVRIIDVSKNNFSGEIPM 624
           +  S+  N +    +       L                     +++D+S N+    +  
Sbjct: 277 LYISN--NRLVALNLYGQPIPTL---------------------KVLDLSHNHLL-HVER 312

Query: 625 ELTYLRGLQSLNLSHNIFTGQIPENIGNLISIESLDFSTNQLSSKISQSMSSLSFLNHLN 684
                  L++L L HN     +   +    ++++L  S N      +   +    +    
Sbjct: 313 NQPQFDRLENLYLDHNSIV-TLK--LSTHHTLKNLTLSHNDWDC--NSLRALFRNVARPA 367

Query: 685 VSNN 688
           V + 
Sbjct: 368 VDDA 371

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 94.3 bits (235), Expect = 1e-20
 Identities = 62/381 (16%), Positives = 128/381 (33%), Gaps = 82/381 (21%)

Query: 328 SLRTLSLDDNCISGPLPPALGDLSSLTRLDLSRNMLNGSIPLSLGKISHLEYLDLSNNKM 387
               + +D              L++   +    + +       L     +E L+L++ ++
Sbjct: 22  VFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQI 81

Query: 388 NGTLSEIHFVNLTKLTWFSASGNSLILQVNPNWVPPFQLKTLLLMSCHLGPQFPSWLHSQ 447
              +    F     +       N++       ++PP   + +                  
Sbjct: 82  E-EIDTYAFAYAHTIQKLYMGFNAI------RYLPPHVFQNV------------------ 116

Query: 448 KNLSVLDISNARISDTIPRWFWNSIFQLSGIIPESFKNFSNLEVLNLGDNEFVGKIPTWM 507
             L+VL +              N +  L       F N   L  L++ +N    +I    
Sbjct: 117 PLLTVLVLER------------NDLSSLP---RGIFHNTPKLTTLSMSNNNLE-RIEDDT 160

Query: 508 GEGFTSLLILILRSNKFDGFLPIQLCRLTSLQILDVANNSLSGTMPGCVNNFSAMATIDS 567
            +  TSL  L L SN+      + L  + SL   +V+ N LS T+   +     +  +D+
Sbjct: 161 FQATTSLQNLQLSSNRLTH---VDLSLIPSLFHANVSYNLLS-TLAIPIA----VEELDA 212

Query: 568 SHQSNAMSYFEVTAYDCEVLEDASIVMKGSMVEYNSILNLVRIIDVSKNNFSGEIPMELT 627
           SH  N+++                            +   + I+ +  NN + +    L 
Sbjct: 213 SH--NSINVVR-----------------------GPVNVELTILKLQHNNLT-DTA-WLL 245

Query: 628 YLRGLQSLNLSHNIFTGQIPENI-GNLISIESLDFSTNQLSSKISQSMSSLSFLNHLNVS 686
              GL  ++LS+N    +I  +    +  +E L  S N+L + ++     +  L  L++S
Sbjct: 246 NYPGLVEVDLSYNELE-KIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLS 303

Query: 687 NNLLT---GKIPSSTQLQSFD 704
           +N L       P   +L++  
Sbjct: 304 HNHLLHVERNQPQFDRLENLY 324

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 81.6 bits (202), Expect = 2e-16
 Identities = 57/374 (15%), Positives = 109/374 (29%), Gaps = 82/374 (21%)

Query: 343 LPPALGDLSSLTRLDLSRNMLNGSIPLSLGKISHLEYLDLSNNKMNGTLSEIHFVNLTKL 402
           +   L        + +     +         +++ + +   N+ M   L      +  ++
Sbjct: 13  IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQV 71

Query: 403 TWFSASGNSLILQVNPNWVPPFQLKTLLLMSCHLGPQFPSWLHSQKNLSVLDISNARISD 462
              + +   +        +  +                         +  L +       
Sbjct: 72  ELLNLNDLQI------EEIDTYAFAYA------------------HTIQKLYMGF----- 102

Query: 463 TIPRWFWNSIFQLSGIIPESFKNFSNLEVLNLGDNEFVGKIPTWMGEGFTSLLILILRSN 522
                  N+I  L    P  F+N   L VL L  N+    +P  +      L  L + +N
Sbjct: 103 -------NAIRYLP---PHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNN 151

Query: 523 KFDGFLPIQLCRLTSLQILDVANNSLSGTMPGCVNNFSAMATIDSSHQSNAMSYFEVTAY 582
             +          TSLQ L +++N L+           ++   + S+  N +S       
Sbjct: 152 NLERIEDDTFQATTSLQNLQLSSNRLTHVDLS---LIPSLFHANVSY--NLLSTL----- 201

Query: 583 DCEVLEDASIVMKGSMVEYNSILNLVRIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIF 642
                               +I   V  +D S N+ +  +   +     L  L L HN  
Sbjct: 202 --------------------AIPIAVEELDASHNSIN-VVRGPV--NVELTILKLQHNNL 238

Query: 643 TGQIPENIGNLISIESLDFSTNQLSSKISQSMSSLSFLNHLNVSNNLLT---GKIPSSTQ 699
           T      + N   +  +D S N+L   +      +  L  L +SNN L            
Sbjct: 239 T-DTA-WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPT 296

Query: 700 LQSFDASCFVGNNL 713
           L+  D S    N+L
Sbjct: 297 LKVLDLS---HNHL 307

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 66.6 bits (163), Expect = 8e-12
 Identities = 38/168 (22%), Positives = 59/168 (35%), Gaps = 24/168 (14%)

Query: 105 LSGNVNPSLVDLKHLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGN 164
           +S N+  +L     +  LD S N    +R          L  L L            L N
Sbjct: 193 VSYNLLSTLAIPIAVEELDASHNSINVVRG----PVNVELTILKLQHNNLTDT--AWLLN 246

Query: 165 LSNLRCLDLSWSE-YALQVHSFSWLSG------------QIPNRLGNLTSLRHLDLSANK 211
              L  +DLS++E   +  H F  +               +      + +L+ LDLS N 
Sbjct: 247 YPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNH 306

Query: 212 FNSTTAGWLSKFNHLEFLSLSSNGLQGTISSIGLENLTSIKTIDLSLN 259
                     +F+ LE L L  N     I ++ L    ++K + LS N
Sbjct: 307 LLHVERN-QPQFDRLENLYLDHNS----IVTLKLSTHHTLKNLTLSHN 349

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 64.3 bits (157), Expect = 6e-11
 Identities = 29/149 (19%), Positives = 49/149 (32%), Gaps = 16/149 (10%)

Query: 111 PSLVDLKHLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRC 170
             L++   L  +DLS N+ + I        ++ L  L +S       +      +  L+ 
Sbjct: 242 AWLLNYPGLVEVDLSYNELEKIM-YHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKV 299

Query: 171 LDLSWSEYALQVHSFSWLSGQIPNRLGNLTSLRHLDLSANKFNSTTAGWLSKFNHLEFLS 230
           LDLS +           L   +         L +L L  N   +     LS  + L+ L+
Sbjct: 300 LDLSHNH----------LL-HVERNQPQFDRLENLYLDHNSIVTLK---LSTHHTLKNLT 345

Query: 231 LSSNGLQGTISSIGLENLTSIKTIDLSLN 259
           LS N            N+      D   +
Sbjct: 346 LSHNDWDCNSLRALFRNVARPAVDDADQH 374

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  116 bits (292), Expect = 2e-28
 Identities = 57/338 (16%), Positives = 100/338 (29%), Gaps = 51/338 (15%)

Query: 226 LEFLSLS-SNGLQGTISSIGLENLTSIKTIDLSLNFELGGPIPTSFVRLCELTSIDVSDV 284
            E L    S  L+     +           D +           S  R     +  +   
Sbjct: 14  RENLYFQGSTALRPYHDVLS--QWQRHYNADRNR--------WHSAWRQANSNNPQIETR 63

Query: 285 KLSQDLSQVLDILSACGASALESLVFSSSQISGHLTSQLGQFKSLRTLSLDDNCISGPLP 344
                L    D+L         +L   S  +      Q  +   L+ +++D   +   LP
Sbjct: 64  TGRA-LKATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLME-LP 120

Query: 345 PALGDLSSLTRLDLSRNMLNGSIPLSLGKISHLEYLDLSNNKMNGTLSE--------IHF 396
             +   + L  L L+RN L  ++P S+  ++ L  L +        L E           
Sbjct: 121 DTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEH 179

Query: 397 VNLTKLTWFSASGNSLILQVNPNWVPP-----FQLKTLLLMSCHLGPQFPSWLHSQKNLS 451
             L  L         +        +P        LK+L + +  L       +H    L 
Sbjct: 180 QGLVNLQSLRLEWTGIRS------LPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLE 232

Query: 452 VLDISNARISDTIPRWFWNSIFQLSGIIPESFKNFSNLEVLNLGDNEFVGKIPTWMGEGF 511
            LD+               ++       P  F   + L+ L L D   +  +P  +    
Sbjct: 233 ELDLRG-----------CTAL----RNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHR-L 276

Query: 512 TSLLILILRSNKFDGFLPIQLCRLTSLQILDVANNSLS 549
           T L  L LR       LP  + +L +  I+ V  +  +
Sbjct: 277 TQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  109 bits (275), Expect = 2e-26
 Identities = 53/319 (16%), Positives = 95/319 (29%), Gaps = 38/319 (11%)

Query: 116 LKHLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRCLDLSW 175
                +L   G+          L   +     + +          +  N +N +    + 
Sbjct: 11  SSGRENLYFQGS-TALRPYHDVLSQWQRHYNADRNRWHS----AWRQANSNNPQIETRTG 65

Query: 176 SEYALQVHSFSWLSG--------------QIPNRLGNLTSLRHLDLSANKFNSTTAGWLS 221
                        +               Q P++   L+ L+H+ + A          + 
Sbjct: 66  RALKATADLLEDATQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPD-TMQ 124

Query: 222 KFNHLEFLSLSSNGLQGTISSIGLENLTSIKTIDLSLNFELG--------GPIPTSFVRL 273
           +F  LE L+L+ N L+   +SI   +L  ++ + +    EL                  L
Sbjct: 125 QFAGLETLTLARNPLRALPASIA--SLNRLRELSIRACPELTELPEPLASTDASGEHQGL 182

Query: 274 CELTSIDVSDVKLSQDLSQVLDILSACGASALESLVFSSSQISGHLTSQLGQFKSLRTLS 333
             L S+ +    +   L       S      L+SL   +S +S  L   +     L  L 
Sbjct: 183 VNLQSLRLEWTGIRS-LPA-----SIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELD 235

Query: 334 LDDNCISGPLPPALGDLSSLTRLDLSRNMLNGSIPLSLGKISHLEYLDLSNNKMNGTLSE 393
           L         PP  G  + L RL L       ++PL + +++ LE LDL        L  
Sbjct: 236 LRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPS 295

Query: 394 IHFVNLTKLTWFSASGNSL 412
                L          +  
Sbjct: 296 -LIAQLPANCIILVPPHLQ 313

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  103 bits (258), Expect = 5e-24
 Identities = 47/380 (12%), Positives = 95/380 (25%), Gaps = 92/380 (24%)

Query: 327 KSLRTLSLDDNCISGPLPPALGDLSSLTRLDLSRNMLNGSIPLSLGKISHLEYLDLSNNK 386
                L    +    P    L         D +R              ++ +    +   
Sbjct: 12  SGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRW----HSAWRQANSNNPQIETRTGRA 67

Query: 387 MNGTLSEIHFVNLTKLTWFSASGNSLILQVNPNWVPPF-----QLKTLLLMSCHLGPQFP 441
           +  T   +                 L         P        L+ + + +  L  + P
Sbjct: 68  LKATADLLEDATQPGRVALELRSVPLPQ------FPDQAFRLSHLQHMTIDAAGL-MELP 120

Query: 442 SWLHSQKNLSVLDISNARISDTIPRWFWNSIFQLSGIIPESFKNFSNLEVLNLGDNEFVG 501
             +     L  L ++   +                  +P S  + + L  L++     + 
Sbjct: 121 DTMQQFAGLETLTLARNPLR----------------ALPASIASLNRLRELSIRACPELT 164

Query: 502 KIPTWMG--------EGFTSLLILILRSNKFDGFLPIQLCRLTSLQILDVANNSLSGTMP 553
           ++P  +         +G  +L  L L        LP  +  L +L+ L + N+ LS  + 
Sbjct: 165 ELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALG 222

Query: 554 GCVNNFSAMATIDSSHQSNAMSYFEVTAYDCEVLEDASIVMKGSMVEYNSILNLV--RII 611
                                                            +I +L     +
Sbjct: 223 ------------------------------------------------PAIHHLPKLEEL 234

Query: 612 DVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQIPENIGNLISIESLDFSTNQLSSKIS 671
           D+         P        L+ L L        +P +I  L  +E LD       S++ 
Sbjct: 235 DLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLP 294

Query: 672 QSMSSLSFLNHLNVSNNLLT 691
             ++ L     + V  +L  
Sbjct: 295 SLIAQLPANCIILVPPHLQA 314

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  101 bits (255), Expect = 1e-23
 Identities = 42/354 (11%), Positives = 93/354 (26%), Gaps = 90/354 (25%)

Query: 318 HLTSQLGQFKSLRTLSLDDNCISGPLPPALGDLSS--LTRLDLSRNMLNGSIPLSLGKIS 375
           H   +     + +  +     +       L D +      L+L    L    P    ++S
Sbjct: 47  HSAWRQANSNNPQIETRTGRALKA-TADLLEDATQPGRVALELRSVPLP-QFPDQAFRLS 104

Query: 376 HLEYLDLSNNKMNGTLSEIHFVNLTKLTWFSASGNSLILQVNPNWVPPFQLKTLLLMSCH 435
           HL+++ +    +      +       L   + + N               L+ L      
Sbjct: 105 HLQHMTIDAAGLMELPDTMQ--QFAGLETLTLARN--------------PLRAL------ 142

Query: 436 LGPQFPSWLHSQKNLSVLDISNARISDTIPRWFWNSIFQLSGIIPESFKNFSNLEVLNLG 495
                P+ + S   L  L I        +P      +           +   NL+ L L 
Sbjct: 143 -----PASIASLNRLRELSIRACPELTELP----EPLASTD--ASGEHQGLVNLQSLRLE 191

Query: 496 DNEFVGKIPTWMGEGFTSLLILILRSNKFDGFLPIQLCRLTSLQILDVANNSLSGTMPGC 555
                  +P  +     +L  L +R++     L   +  L  L+ LD+   +     P  
Sbjct: 192 WTGIR-SLPASIAN-LQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYP-- 246

Query: 556 VNNFSAMATIDSSHQSNAMSYFEVTAYDCEVLEDASIVMKGSMVEYNSILNLV--RIIDV 613
                                                                  + + +
Sbjct: 247 ----------------------------------------------PIFGGRAPLKRLIL 260

Query: 614 SKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQIPENIGNLISIESLDFSTNQLS 667
              +    +P+++  L  L+ L+L   +   ++P  I  L +   +    +  +
Sbjct: 261 KDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 89.6 bits (223), Expect = 1e-19
 Identities = 46/355 (12%), Positives = 100/355 (28%), Gaps = 76/355 (21%)

Query: 350 LSSLTRLDLSRNMLNGSIPLSLGKISHLEYLDLSNNKMNGTLSEIHFVNLTKLTWFSASG 409
            S    L    +         L +       D +        +     N       + +G
Sbjct: 11  SSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQA-----NSNNPQIETRTG 65

Query: 410 NSLILQVNPNWVPPFQLKTLLLMSCHLGPQFPSWLH--SQKNLSVLDISNARISDTIPRW 467
            +L                               L   +Q     L++ +  +       
Sbjct: 66  RAL-------------------------KATADLLEDATQPGRVALELRSVPLPQ----- 95

Query: 468 FWNSIFQLSGIIPESFKNFSNLEVLNLGDNEFVGKIPTWMGEGFTSLLILILRSNKFDGF 527
                       P+     S+L+ + +     + ++P  M + F  L  L L  N     
Sbjct: 96  -----------FPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQ-FAGLETLTLARNPLRA- 141

Query: 528 LPIQLCRLTSLQILDVANNSLSGTMPGCVNNFSAMATIDSSHQSNAMSYFEVTAYDCEVL 587
           LP  +  L  L+ L +        +P  + +  A                         L
Sbjct: 142 LPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVN----------------L 185

Query: 588 EDASIVMKGSMVEY--NSILNLV--RIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFT 643
           +   + ++ + +     SI NL   + + +  +  S  +   + +L  L+ L+L      
Sbjct: 186 QS--LRLEWTGIRSLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTAL 242

Query: 644 GQIPENIGNLISIESLDFS-TNQLSSKISQSMSSLSFLNHLNVSNNLLTGKIPSS 697
              P   G    ++ L     + L + +   +  L+ L  L++   +   ++PS 
Sbjct: 243 RNYPPIFGGRAPLKRLILKDCSNLLT-LPLDIHRLTQLEKLDLRGCVNLSRLPSL 296

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 88.8 bits (221), Expect = 2e-19
 Identities = 40/243 (16%), Positives = 74/243 (30%), Gaps = 13/243 (5%)

Query: 111 PSLVDLKHLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRC 170
                L HL H+ +         +P  +     L  L L+       +P  + +L+ LR 
Sbjct: 98  DQAFRLSHLQHMTIDAAGLM--ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRE 154

Query: 171 LDLSWSEYALQVHSFSWLSGQIPNRLGNLTSLRHLDLSANKFNSTTAGWLSKFNHLEFLS 230
           L +      L        S         L +L+ L L      S  A  ++   +L+ L 
Sbjct: 155 LSIRACP-ELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPAS-IANLQNLKSLK 212

Query: 231 LSSNGLQGTISSIGLENLTSIKTIDLSLNFELGGPIPTSFVRLCELTSIDVSDVKLSQDL 290
           + ++ L     +I   +L  ++ +DL     L    P  F     L  + + D      L
Sbjct: 213 IRNSPLSALGPAIH--HLPKLEELDLRGCTALRN-YPPIFGGRAPLKRLILKDCSNLLTL 269

Query: 291 SQVLDILSACGASALESLVFSSSQISGHLTSQLGQFKSLRTLSLDDNCISGPLPPALGDL 350
                       + LE L          L S + Q  +   + +  +  +          
Sbjct: 270 PL-----DIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQHRPVAR 324

Query: 351 SSL 353
            + 
Sbjct: 325 PAE 327

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 71.9 bits (177), Expect = 1e-13
 Identities = 31/171 (18%), Positives = 57/171 (33%), Gaps = 18/171 (10%)

Query: 103 SMLSGNVNPSLVDLKHLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQL 162
            + S + +     L +L  L L     +   +P  + +L+NL+ L +  +  +  +   +
Sbjct: 169 PLASTDASGEHQGLVNLQSLRLEWTGIR--SLPASIANLQNLKSLKIRNSPLSA-LGPAI 225

Query: 163 GNLSNLRCLDLSWSEYALQVHSFSWLSGQIPNRLGNLTSLRHLDLSANKFNSTTAGWLSK 222
            +L  L  LDL            + L    P   G    L+ L L       T    + +
Sbjct: 226 HHLPKLEELDLR---------GCTALRN-YPPIFGGRAPLKRLILKDCSNLLTLPLDIHR 275

Query: 223 FNHLEFLSLSSNGLQGTI-SSIGLENLTSIKTIDLSLNFELGGP--IPTSF 270
              LE L L        + S I    L +   I +  + +       P + 
Sbjct: 276 LTQLEKLDLRGCVNLSRLPSLIA--QLPANCIILVPPHLQAQLDQHRPVAR 324

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 57.3 bits (139), Expect = 8e-09
 Identities = 24/245 (9%), Positives = 72/245 (29%), Gaps = 52/245 (21%)

Query: 479 IPESFKNFSNLEVLNLGDNEFVGKIPTWMGEGFTSLLILILRSNKFDGFLP--IQLCRLT 536
             +    +      +        +          +   +  R+ +        ++     
Sbjct: 28  YHDVLSQWQRHYNADRNRWHSAWRQANS------NNPQIETRTGRALKATADLLEDATQP 81

Query: 537 SLQILDVANNSLSGTMPGCVNNFSAMATIDSSHQSNAMSYFEVTAYDCEVLEDASIVMKG 596
               L++ +  L    P      S +  +        +                      
Sbjct: 82  GRVALELRSVPLP-QFPDQAFRLSHLQHMTIDA--AGLMELP------------------ 120

Query: 597 SMVEYNSILNLV--RIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQIPENIGN-- 652
                +++        + +++N     +P  +  L  L+ L++       ++PE + +  
Sbjct: 121 -----DTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTD 174

Query: 653 -------LISIESLDFSTNQLSSKISQSMSSLSFLNHLNVSNNLLTGKIPSS----TQLQ 701
                  L++++SL      + S +  S+++L  L  L + N+ L+  +  +     +L+
Sbjct: 175 ASGEHQGLVNLQSLRLEWTGIRS-LPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLE 232

Query: 702 SFDAS 706
             D  
Sbjct: 233 ELDLR 237

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 56.5 bits (137), Expect = 1e-08
 Identities = 24/196 (12%), Positives = 62/196 (31%), Gaps = 20/196 (10%)

Query: 535 LTSLQILDVANNSLSGTMPGCVNNFSAMATIDSSHQSNAMSYFEVTAYDCEVLEDASIVM 594
            +  + L    ++        ++ +      D +   +A           E     ++  
Sbjct: 11  SSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKA 70

Query: 595 KGSMVEYNSILNLVRIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQIPENIGNLI 654
              ++E  +       +++       + P +   L  LQ + +       ++P+ +    
Sbjct: 71  TADLLEDATQPGR-VALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFA 127

Query: 655 SIESLDFSTNQLSSKISQSMSSLSFLNHLNVSNNLLTGKIPSS-------------TQLQ 701
            +E+L  + N L + +  S++SL+ L  L++       ++P                 LQ
Sbjct: 128 GLETLTLARNPLRA-LPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQ 186

Query: 702 SFDASCFVGNNLCGPP 717
           S          +   P
Sbjct: 187 SLRLEW---TGIRSLP 199

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  113 bits (284), Expect = 2e-26
 Identities = 81/481 (16%), Positives = 152/481 (31%), Gaps = 58/481 (12%)

Query: 117 KHLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRCLDLSWS 176
           +  T L++S N    +     + SL  LR L +S      +          L  LDLS +
Sbjct: 21  QKTTILNISQNYISELW-TSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN 79

Query: 177 EYALQVHSFSWLSG--------------QIPNRLGNLTSLRHLDLSANKFNSTTAGWLSK 222
           +  L   S                     I    GN++ L+ L LS           +  
Sbjct: 80  K--LVKISCHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHL---EKSSVLP 134

Query: 223 FNHLEFLSLSSNGLQGTISSIGLENLTSIKTIDLSLNFELGGPIPTSFVRLCELTSIDVS 282
             HL    +     +        E L    T  L + F          + +   T  ++ 
Sbjct: 135 IAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVF-PTNKEFHFILDVSVKTVANLE 193

Query: 283 DVKLSQDLSQVL------DILSACGASALESLVFSSSQISGHLTSQLGQF---KSLRTLS 333
              +   L           +        L +L  ++ + + +   ++ Q     ++   S
Sbjct: 194 LSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFS 253

Query: 334 LDDNCISGPLPPALGDLS-----SLTRLDLSRNMLNGSIPLSLGKISHLEYLDLSNNKMN 388
           + +  + G L     D S     +L+   +  ++            S++   + + +   
Sbjct: 254 ISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSG-T 312

Query: 389 GTLSEIHFVNLTKLTWFSASGNSLILQVNPNWVPPFQLKTLLLMSCHLG--PQFPSWLHS 446
             +  +    ++       S N L   V  N     +L+TL+L    L    +       
Sbjct: 313 RMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQ 372

Query: 447 QKNLSVLDISNARISDTIPRWFWNSIFQLSGIIPESFKNFSNLEVLNLGDNEFVGKIPTW 506
            K+L  LDIS   +S                          +L  LN+  N     +   
Sbjct: 373 MKSLQQLDISQNSVSYDEK--------------KGDCSWTKSLLSLNMSSN----ILTDT 414

Query: 507 MGEGFTSLL-ILILRSNKFDGFLPIQLCRLTSLQILDVANNSLSGTMPGCVNNFSAMATI 565
           +       + +L L SNK    +P Q+ +L +LQ L+VA+N L     G  +  +++  I
Sbjct: 415 IFRCLPPRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKI 473

Query: 566 D 566
            
Sbjct: 474 W 474

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 97.6 bits (243), Expect = 2e-21
 Identities = 87/496 (17%), Positives = 163/496 (32%), Gaps = 55/496 (11%)

Query: 193 PNRLGNLTSLRHLDLSANKFNSTTAGWLSKFNHLEFLSLSSNGLQGTISSIGLENLTSIK 252
            + + +L+ LR L +S N+              LE+L LS N L      I      ++K
Sbjct: 38  TSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV----KISCHPTVNLK 93

Query: 253 TIDLSLNFELGGPIPTSFVRLCELTSIDVSDVKLSQDLSQVLDILSACGASALESLVFSS 312
            +DLS N     PI   F  + +L  + +S   L +     +  L+        S V   
Sbjct: 94  HLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLN-------ISKVLLV 146

Query: 313 SQISGHLTSQLGQFKSLRTLSLDDNCISGPLPPALGDLSSLTRLDLSRNMLNGSIPLSLG 372
              +          +   T SL     +      + D+S  T  +L  + +     +   
Sbjct: 147 LGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKC---VLED 203

Query: 373 KISHLEYLDLSNNKMNGTLSEIHFVNLTKLTWFSASGNSLILQVNPNWVPPFQLKTLLLM 432
                    L+  + N  LS +   N+ + TW   S   ++  V    V  F +  + L 
Sbjct: 204 NKCSYFLSILAKLQTNPKLSNLTLNNI-ETTW--NSFIRILQLVWHTTVWYFSISNVKLQ 260

Query: 433 SCHLGPQFPSWLHSQKNLSVLDISNARISDTIPRWFWNSIFQLSGIIPESFKNFSNLEVL 492
                  F     S K LS+  + +                         ++ FSN+ + 
Sbjct: 261 GQLDFRDFDYSGTSLKALSIHQVVSD---------------VFGFPQSYIYEIFSNMNIK 305

Query: 493 NLGDNEFVGKIPTWMGEGFTSLLILILRSNKFDGFLPIQLCRLTSLQILDVANNSLSGTM 552
           N   +     +        +  L L   +N     +      LT L+ L +  N L   +
Sbjct: 306 NFTVSG-TRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLK-EL 363

Query: 553 PGCVNNFSAMATIDSSHQSNAMSYFEVTAYDCEVLEDASIVMKGSMVEYNSILNLVRIID 612
                  + M ++                 D   +   S+       + +   +L   ++
Sbjct: 364 SKIAEMTTQMKSL--------------QQLD---ISQNSVSYDEKKGDCSWTKSL-LSLN 405

Query: 613 VSKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQIPENIGNLISIESLDFSTNQLSSKISQ 672
           +S N  +  I   L     ++ L+L  N     IP+ +  L +++ L+ ++NQL S    
Sbjct: 406 MSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDG 462

Query: 673 SMSSLSFLNHLNVSNN 688
               L+ L  + +  N
Sbjct: 463 IFDRLTSLQKIWLHTN 478

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 86.5 bits (214), Expect = 8e-18
 Identities = 84/456 (18%), Positives = 144/456 (31%), Gaps = 75/456 (16%)

Query: 303 SALESLVFSSSQISGHLTSQLGQFKSLRTLSLDDNCISGPLPPALGDLSSLTRLDLSRNM 362
                L  S + IS   TS +     LR L +  N I             L  LDLS N 
Sbjct: 21  QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNK 80

Query: 363 LNGSIPLSLGKISHLEYLDLSNNKMNGTLSEIHFVNLTKLTWFSASGNSL---------- 412
           L     +S     +L++LDLS N  +       F N+++L +   S   L          
Sbjct: 81  LVK---ISCHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAH 137

Query: 413 ------ILQVNPNWVPPFQ---LKTLLLMSCHLGPQFPSWLHSQKNLSVLDISNARISDT 463
                 +L +   +        L+     S H+        H   ++SV  ++N  +S+ 
Sbjct: 138 LNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSN- 196

Query: 464 IPRWFWNSIFQLSGIIPESFKNFSNLEVLNLGDNEFVGKIPTWMGEGF--TSLLILILRS 521
           I     ++       I    +    L  L L + E        + +    T++    + +
Sbjct: 197 IKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISN 256

Query: 522 NKFDG-----FLPIQLCRLTSLQILDVANNSLSGTMPGCVNNFSAMATID---SSHQSNA 573
            K  G             L +L I  V ++            FS M   +   S  +   
Sbjct: 257 VKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVH 316

Query: 574 MSYFEVTAYDCEVLEDASIVMKGSMVEYNSILNLVRIIDVSKNNFSGEIPMELTYLRGLQ 633
           M                            S ++    +D S N  +  +     +L  L+
Sbjct: 317 MLCP-------------------------SKISPFLHLDFSNNLLTDTVFENCGHLTELE 351

Query: 634 SLNLSHNIFTGQIPENIG---NLISIESLDFSTNQLSSKISQSM-SSLSFLNHLNVSNNL 689
           +L L  N    ++ +       + S++ LD S N +S    +   S    L  LN+S+N+
Sbjct: 352 TLILQMNQLK-ELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNI 410

Query: 690 LTGKIP------------SSTQLQSFDASCFVGNNL 713
           LT  I              S +++S          L
Sbjct: 411 LTDTIFRCLPPRIKVLDLHSNKIKSIPKQVVKLEAL 446

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 79.9 bits (197), Expect = 1e-15
 Identities = 49/304 (16%), Positives = 116/304 (38%), Gaps = 19/304 (6%)

Query: 112 SLVDLKHLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRCL 171
            L ++K +   +        +   +    L NL   N+     + I   QL   + +   
Sbjct: 193 ELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYF 252

Query: 172 DLSWSEYALQVHSFSWLSGQIPNRLGNLTSLRHLDLSANKFNSTTAGWLSKFNHLEFLSL 231
            +S     +++               +L +L    + ++ F    +     F+++   + 
Sbjct: 253 SISN----VKLQGQLDFR-DFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNF 307

Query: 232 SSNGLQGTISSIGLENLTSIKTIDLSLNFELGGPIPTSFVRLCELTSIDVSDVKLS--QD 289
           + +G +  +  +    ++    +D S N  L   +  +   L EL ++ +   +L     
Sbjct: 308 TVSGTR-MVHMLCPSKISPFLHLDFSNN-LLTDTVFENCGHLTELETLILQMNQLKELSK 365

Query: 290 LSQVLDILSACGASALESLVFSSSQISGHLTSQL-GQFKSLRTLSLDDNCISGPLPPALG 348
           ++++   + +     L+ L  S + +S           KSL +L++  N ++  +   L 
Sbjct: 366 IAEMTTQMKS-----LQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL- 419

Query: 349 DLSSLTRLDLSRNMLNGSIPLSLGKISHLEYLDLSNNKMNGTLSEIHFVNLTKLTWFSAS 408
               +  LDL  N +  SIP  + K+  L+ L++++N++  ++ +  F  LT L      
Sbjct: 420 -PPRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWLH 476

Query: 409 GNSL 412
            N  
Sbjct: 477 TNPW 480

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 79.5 bits (196), Expect = 1e-15
 Identities = 55/336 (16%), Positives = 108/336 (32%), Gaps = 33/336 (9%)

Query: 39  LLKLKQDLKDPSNRLGSWVVDGDCCKWAEVVCSNLTG---HVLQLSLRNPFRNDLRYATT 95
                  +  P+N+   +++D      A +  SN+             +           
Sbjct: 163 FNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKL 222

Query: 96  EYEDYMRSMLSGNVNPSL---VDLKHLTHLDLSGNDFQGIRIPKYLG----SLKNLRYLN 148
                     + N    +   V    + +  +S    QG    +       SLK L    
Sbjct: 223 SNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQ 282

Query: 149 LSGAEFAGIIPHQLGNLSNLRCLDLSWSE-YALQVHSFSWLSGQIPNRLGNLTSLRHLDL 207
           +    F     +     SN+   + + S    + +   S            ++   HLD 
Sbjct: 283 VVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPS-----------KISPFLHLDF 331

Query: 208 SANKFNSTTAGWLSKFNHLEFLSLSSNGLQGTISSIG--LENLTSIKTIDLSLNFELGGP 265
           S N    T          LE L L  N L+  +S I      + S++ +D+S N      
Sbjct: 332 SNNLLTDTVFENCGHLTELETLILQMNQLK-ELSKIAEMTTQMKSLQQLDISQNSVSYDE 390

Query: 266 IPTSFVRLCELTSIDVSDVKLSQDLSQVLDILSACGASALESLVFSSSQISGHLTSQLGQ 325
                     L S+++S   L+  + + L          ++ L   S++I   +  Q+ +
Sbjct: 391 KKGDCSWTKSLLSLNMSSNILTDTIFRCLP-------PRIKVLDLHSNKIK-SIPKQVVK 442

Query: 326 FKSLRTLSLDDNCISGPLPPALGDLSSLTRLDLSRN 361
            ++L+ L++  N +          L+SL ++ L  N
Sbjct: 443 LEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTN 478

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 43.7 bits (103), Expect = 2e-04
 Identities = 23/111 (20%), Positives = 41/111 (36%), Gaps = 15/111 (13%)

Query: 116 LKHLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRCLDLSW 175
           +K L  LD+S N              K+L  LN+S       I   L     ++ LDL  
Sbjct: 373 MKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL--PPRIKVLDLHS 430

Query: 176 SEY-ALQVHSFS-------WLSG----QIPNR-LGNLTSLRHLDLSANKFN 213
           ++  ++              ++      +P+     LTSL+ + L  N ++
Sbjct: 431 NKIKSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWD 481

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  113 bits (284), Expect = 3e-26
 Identities = 81/601 (13%), Positives = 174/601 (28%), Gaps = 60/601 (9%)

Query: 109 VNPSLVDLKHLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNL 168
           ++ +L        + +           + + +L N + +    +    +    L +   +
Sbjct: 19  IDSNLQYDCVFYDVHIDMQTQDVYFGFEDI-TLNNQKIVTFKNSTMRKLPAALLDSFRQV 77

Query: 169 RCLDLSWSEYALQVHSFSWLSGQIPNRLGNLTSLRHLDLSANKFNSTTAGWLSKFNHLEF 228
             L+L+      Q+                  +++ L +  N               L  
Sbjct: 78  ELLNLNDL----QIEEID------TYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV 127

Query: 229 LSLSSNGLQGTISSIGLENLTSIKTIDLSLNFELGGPIPTSFVRLCELTSIDVSDVKLSQ 288
           L L  N L  ++      N   + T+ +S N  L      +F     L ++ +S  +L+ 
Sbjct: 128 LVLERNDLS-SLPRGIFHNTPKLTTLSMSNN-NLERIEDDTFQATTSLQNLQLSSNRLTH 185

Query: 289 DLSQVLDIL-----------SACGASALESLVFSSSQISGHLTSQLGQFKSLRTLSLDDN 337
               ++  L           +     A+E L  S + I+     +      L  L L  N
Sbjct: 186 VDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSIN---VVRGPVNVELTILKLQHN 242

Query: 338 CISGPLPPALGDLSSLTRLDLSRNMLNGSIPLSLGKISHLEYLDLSNNKMNGTLSEIH-- 395
            ++      L +   L  +DLS N L   +     K+  LE L +SNN+    L  ++  
Sbjct: 243 NLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR----LVALNLY 296

Query: 396 FVNLTKLTWFSASGNSLILQVNPNWVPPFQLKTLLLMSCHLGPQFPSWLHSQKNLSVLDI 455
              +  L     S N  +L V  N     +L+ L L    +     S  H    L  L +
Sbjct: 297 GQPIPTLKVLDLSHNH-LLHVERNQPQFDRLENLYLDHNSIVTLKLSTHH---TLKNLTL 352

Query: 456 SNARISDTIPRWFWNSIFQLSGIIPESFKNFSNLEVLNLGDNEFVGKIPTWMGEGFTSLL 515
           S+        R                   F N+    + D +   KI   +  G     
Sbjct: 353 SHNDWDCNSLRAL-----------------FRNVARPAVDDADQHCKIDYQLEHGLCCKE 395

Query: 516 ILILRSNKFDGFLPIQ--LCRLTSLQILDVANNSLSGTMPGCVNNFSAMATIDSSHQSNA 573
                 ++   ++ +   + ++   Q    A ++++                   ++   
Sbjct: 396 SDKPYLDRLLQYIALTSVVEKVQRAQGRCSATDTINSVQSLSHYITQQGGVPLQGNEQLE 455

Query: 574 MSYFEVTAYDCEVLEDASIVMKGSMVEYNSILNLVRIIDVSKNNFSGEIPMELTYLRGLQ 633
               E+ A   ++  +     +     +  I   +R   + K+  +            L+
Sbjct: 456 AEVNELRAEVQQLTNEQIQQEQLLQGLHAEIDTNLRRYRLPKDGLARSSDNLNKVFTHLK 515

Query: 634 SLNLSHNIFTGQIPENIGNLI-SIESLDFSTNQLSSKI-SQSMSSLSFLNHLNVSNNLLT 691
                    T              E L+     L  ++ ++           ++    + 
Sbjct: 516 ERQAFKLRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVK 575

Query: 692 G 692
            
Sbjct: 576 Q 576

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 96.9 bits (241), Expect = 5e-21
 Identities = 66/415 (15%), Positives = 128/415 (30%), Gaps = 61/415 (14%)

Query: 282 SDVKLSQDLSQVLDILSACGASALESLVFSSSQISGHLTSQLGQFKSLRTLSLDDNCISG 341
            DV +      V         +  + + F +S +     + L  F+ +  L+L+D  I  
Sbjct: 30  YDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEE 89

Query: 342 PLPPALGDLSSLTRLDLSRNMLNGSIPLSLGKISHLEYLDLSNNKMNGTLSEIHFVNLTK 401
               A     ++ +L +  N +    P     +  L  L L  N ++ +L    F N  K
Sbjct: 90  IDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPK 148

Query: 402 LTWFSASGNSLILQVNPNWVPPFQLKTLLLMSCHLGPQFPSWLHSQKNLSVLDISNARIS 461
           LT  S S N               L+ +                +  +L  L +S+ R++
Sbjct: 149 LTTLSMSNN--------------NLERIE----------DDTFQATTSLQNLQLSSNRLT 184

Query: 462 DTIPRWFWN-SIFQLSGIIPESFKNFSNLEVLNLGDNEFVGKIPTWMGEGFTSLLILILR 520
                   +     +S  +  +      +E L+   N     +    G     L IL L+
Sbjct: 185 HVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSIN-VVR---GPVNVELTILKLQ 240

Query: 521 SNKFDGFLPIQLCRLTSLQILDVANNSLSGTMPGCVNNFSAMATIDSSHQSNAMSYFEVT 580
            N         L     L  +D++ N L   M         +  +  S+  N +    + 
Sbjct: 241 HNNLTD-TA-WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISN--NRLVALNLY 296

Query: 581 AYDCEVLEDASIVMKGSMVEYNSILNLVRIIDVSKNNFSGEIPMELTYLRGLQSLNLSHN 640
                 L                     +++D+S N+    +         L++L L HN
Sbjct: 297 GQPIPTL---------------------KVLDLSHNHLL-HVERNQPQFDRLENLYLDHN 334

Query: 641 IFTGQIPENIGNLISIESLDFSTNQLSSKISQSMSSLSFLNHLNVSNNLLTGKIP 695
                +   +    ++++L  S N      +   +    +    V +     KI 
Sbjct: 335 SIV-TLK--LSTHHTLKNLTLSHNDWDC--NSLRALFRNVARPAVDDADQHCKID 384

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score =  109 bits (274), Expect = 2e-25
 Identities = 77/438 (17%), Positives = 137/438 (31%), Gaps = 100/438 (22%)

Query: 112 SLVDLKHLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRCL 171
           S   L  LT LD   +    +     +  L  L  L  +      +    L   +NL  L
Sbjct: 37  SEEQLATLTSLDCHNSSITDM---TGIEKLTGLTKLICTSNNITTL---DLSQNTNLTYL 90

Query: 172 DLSWSEYALQVHSFSWLSGQIPNRLGNLTSLRHLDLSANKFNSTTAGWLSKFNHLEFLSL 231
               +    ++ +           +  LT L +L+   NK        +S+   L +L+ 
Sbjct: 91  ACDSN----KLTNLD---------VTPLTKLTYLNCDTNKLTKLD---VSQNPLLTYLNC 134

Query: 232 SSNGLQGTISSIGLENLTSIKTIDLSLNFELGGPIPTSFVRLCELTSIDVSDVKLSQDLS 291
           + N     ++ I + + T +  +D  LN ++            +LT++D S  K+++   
Sbjct: 135 ARNT----LTEIDVSHNTQLTELDCHLNKKITKL---DVTPQTQLTTLDCSFNKITE--- 184

Query: 292 QVLDILSACGASALESLVFSSSQISGHLTSQLGQFKSLRTLSLDDNCISGPLPPALGDLS 351
                L       L  L   ++ I+      L Q   L  L    N ++  +   +  L+
Sbjct: 185 -----LDVSQNKLLNRLNCDTNNIT---KLDLNQNIQLTFLDCSSNKLTE-ID--VTPLT 233

Query: 352 SLTRLDLSRNMLNGSIPLSLGKISHLEYLDLSNNKMNGTLSEIHFVNLTKLTWFSASGNS 411
            LT  D S N L     L +  +S L  L          L EI   + T+L +F A G  
Sbjct: 234 QLTYFDCSVNPLT---ELDVSTLSKLTTLHCIQTD----LLEIDLTHNTQLIYFQAEGCR 286

Query: 412 LILQVNPNWVPPFQLKTLLLMSCHLGPQFPSWLHSQKNLSVLDISNARISDTIPRWFWNS 471
            I +++                          +     L +LD   A I++         
Sbjct: 287 KIKELD--------------------------VTHNTQLYLLDCQAAGITE--------- 311

Query: 472 IFQLSGIIPESFKNFSNLEVLNLGDNEFVGKIPTWMGEGFTSLLILILRSNKFDGFLPIQ 531
                            L  L L + E   ++        T L  L   +     F  + 
Sbjct: 312 ---------LDLSQNPKLVYLYLNNTELT-ELDV---SHNTKLKSLSCVNAHIQDFSSVG 358

Query: 532 LCRLTSLQILDVANNSLS 549
             ++ +L     A     
Sbjct: 359 --KIPALNNNFEAEGQTI 374

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 96.7 bits (241), Expect = 3e-21
 Identities = 68/496 (13%), Positives = 144/496 (29%), Gaps = 139/496 (28%)

Query: 196 LGNLTSLRHLDLSANKFNSTTAGWLSKFNHLEFLSLSSNGLQGTISSIGLENLTSIKTID 255
              L +L  LD   +     T   + K   L  L  +SN     I+++ L   T++  + 
Sbjct: 38  EEQLATLTSLDCHNSSITDMTG--IEKLTGLTKLICTSNN----ITTLDLSQNTNLTYLA 91

Query: 256 LSLNFELGGPIPT-SFVRLCELTSIDVSDVKLSQDLSQVLDILSACGASALESLVFSSSQ 314
              N      +       L +LT ++    KL++        L       L  L  + + 
Sbjct: 92  CDSN-----KLTNLDVTPLTKLTYLNCDTNKLTK--------LDVSQNPLLTYLNCARNT 138

Query: 315 ISGHLTSQLGQFKSLRTLSLDDNCISGPLPPALGDLSSLTRLDLSRNMLNGSIPLSLGKI 374
           ++      +     L  L    N     L   +   + LT LD S N +     L + + 
Sbjct: 139 LT---EIDVSHNTQLTELDCHLNKKITKLD--VTPQTQLTTLDCSFNKITE---LDVSQN 190

Query: 375 SHLEYLDLSNNKMNGTLSEIHFVNLTKLTWFSASGNSLILQVNPNWVPPFQLKTLLLMSC 434
             L  L+   N     ++++      +LT+   S N              +L  + +   
Sbjct: 191 KLLNRLNCDTNN----ITKLDLNQNIQLTFLDCSSN--------------KLTEIDVTPL 232

Query: 435 HLGPQFPSWLHSQKNLSVLDISNARISDTIPRWFWNSIFQLSGIIPESFKNFSNLEVLNL 494
                          L+  D S   +++                +  S    S L  L+ 
Sbjct: 233 -------------TQLTYFDCSVNPLTE----------------LDVS--TLSKLTTLHC 261

Query: 495 GDNEFVGKIPTWMGEGFTSLLILILRSNKFDGFLPIQLCRLTSLQILDVANNSLSGTMPG 554
                   +        T L+       +    L +     T L +LD     ++     
Sbjct: 262 IQT----DLLEIDLTHNTQLIYFQAEGCRKIKELDV--THNTQLYLLDCQAAGIT----- 310

Query: 555 CVNNFSAMATIDSSHQSNAMSYFEVTAYDCEVLEDASIVMKGSMVEYNSILNLVRIIDVS 614
                     +D S                                       +  + ++
Sbjct: 311 ---------ELDLSQNPK-----------------------------------LVYLYLN 326

Query: 615 KNNFSGEIPMELTYLRGLQSLNLSHNIFTGQIPENIGNLISIESLDFSTNQLSSKISQSM 674
               + E+   +++   L+SL+  +          +G + ++ +   +  Q  +   +++
Sbjct: 327 NTELT-ELD--VSHNTKLKSLSCVNAHIQ-DFSS-VGKIPALNNNFEAEGQTITMPKETL 381

Query: 675 SSLSFLNHLNVSNNLL 690
           ++ S    + VS +LL
Sbjct: 382 TNNSL--TIAVSPDLL 395

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 96.3 bits (240), Expect = 4e-21
 Identities = 77/435 (17%), Positives = 140/435 (32%), Gaps = 81/435 (18%)

Query: 292 QVLDILSACGASALESLVFSSSQISGHLTSQLGQFKSLRTLSLDDNCISGPLPPALGDLS 351
           Q  D +S    + L SL   +S I+    + + +   L  L    N I+  L   L   +
Sbjct: 31  QATDTISEEQLATLTSLDCHNSSITD--MTGIEKLTGLTKLICTSNNITT-LD--LSQNT 85

Query: 352 SLTRLDLSRNMLNGSIPLSLGKISHLEYLDLSNNKMNGTLSEIHFVNLTKLTWFSASGNS 411
           +LT L    N L     L +  ++ L YL+   NK    L+++       LT+ + + N+
Sbjct: 86  NLTYLACDSNKLTN---LDVTPLTKLTYLNCDTNK----LTKLDVSQNPLLTYLNCARNT 138

Query: 412 L-ILQVNPNWVPPFQLKTLLLMSCHLGPQFPSWLHSQKNLSVLDISNARISDTIPRWFWN 470
           L  + V+ N     QL  L         +    +  Q  L+ LD S  +I++        
Sbjct: 139 LTEIDVSHN----TQLTELDCHLNKKITKLD--VTPQTQLTTLDCSFNKITE-------- 184

Query: 471 SIFQLSGIIPESFKNFSNLEVLNLGDNEFVGKIPTWMGEGFTSLLILILRSNKFDGFLPI 530
                             L  LN   N     I          L  L   SNK      I
Sbjct: 185 ----------LDVSQNKLLNRLNCDTN----NITKLDLNQNIQLTFLDCSSNKLTE---I 227

Query: 531 QLCRLTSLQILDVANNSLSGTMPGCVNNFSAMATIDSSHQSNAMSYFEVTAYDCEVLEDA 590
            +  LT L   D + N L+               +D S  S               L   
Sbjct: 228 DVTPLTQLTYFDCSVNPLT--------------ELDVSTLSK--------------LT-- 257

Query: 591 SIVMKGSMVEYNSILNLVRIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQIPENI 650
           ++    + +    + +  ++I            +++T+   L  L+      T     ++
Sbjct: 258 TLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGIT---ELDL 314

Query: 651 GNLISIESLDFSTNQLSSKISQSMSSLSFLNHLNVSNNLLTGKIPSSTQLQSFDASCFVG 710
                +  L  +  +L+      +S  + L  L+  N  +     S  ++ + + +    
Sbjct: 315 SQNPKLVYLYLNNTELTE---LDVSHNTKLKSLSCVNAHIQ-DFSSVGKIPALNNNFEAE 370

Query: 711 NNLCGPPLPSCTENN 725
                 P  + T N+
Sbjct: 371 GQTITMPKETLTNNS 385

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 86.7 bits (215), Expect = 5e-18
 Identities = 71/414 (17%), Positives = 138/414 (33%), Gaps = 83/414 (20%)

Query: 303 SALESLVFSSSQISGHLTSQLGQFKSLRTLSLDDNCISGPLPPALGDLSSLTRLDLSRNM 362
               S V ++ ++    T    Q  +L +L   ++ I+      +  L+ LT+L  + N 
Sbjct: 18  DNFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITDM--TGIEKLTGLTKLICTSNN 75

Query: 363 LNGSIPLSLGKISHLEYLDLSNNKMNGTLSEIHFVNLTKLTWFSASGNSLILQVNPNWVP 422
           +     L L + ++L YL   +NK    L+ +    LTKLT+ +   N L        + 
Sbjct: 76  ITT---LDLSQNTNLTYLACDSNK----LTNLDVTPLTKLTYLNCDTNKLTK------LD 122

Query: 423 PFQLKTLLLMSCHLGPQFPSW-LHSQKNLSVLDISNARISDTIPRWFWNSIFQLSGIIPE 481
             Q   L  ++C          +     L+ LD    +    +                 
Sbjct: 123 VSQNPLLTYLNCA-RNTLTEIDVSHNTQLTELDCHLNKKITKLD---------------- 165

Query: 482 SFKNFSNLEVLNLGDNEFVGKIPTWMGEGFTSLLILILRSNKFDGFLPIQLCRLTSLQIL 541
                + L  L+   N    KI          L  L   +N       + L +   L  L
Sbjct: 166 -VTPQTQLTTLDCSFN----KITELDVSQNKLLNRLNCDTNNITK---LDLNQNIQLTFL 217

Query: 542 DVANNSLSGTMPGCVNNFSAMATIDSSHQSNAMSYFEVTAYDCEVLEDASIVMKGSMVEY 601
           D ++N L+  +   V   + +   D S   N ++  +V                      
Sbjct: 218 DCSSNKLT-EID--VTPLTQLTYFDCSV--NPLTELDV---------------------- 250

Query: 602 NSILNLVRIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQIPENIGNLISIESLDF 661
            S L+ +  +   + +   EI   LT+   L            ++  ++ +   +  LD 
Sbjct: 251 -STLSKLTTLHCIQTDLL-EID--LTHNTQLIYFQAEGCRKIKEL--DVTHNTQLYLLDC 304

Query: 662 STNQLSSKISQSMSSLSFLNHLNVSNNLLTGKIPSS--TQLQSFDASCFVGNNL 713
               ++      +S    L +L ++N  LT ++  S  T+L+S         ++
Sbjct: 305 QAAGITEL---DLSQNPKLVYLYLNNTELT-ELDVSHNTKLKSLSCV---NAHI 351

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 76.7 bits (189), Expect = 8e-15
 Identities = 50/313 (15%), Positives = 85/313 (27%), Gaps = 71/313 (22%)

Query: 111 PSLVDLKHLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRC 170
             +     LT LD S N    +     +   K L  LN        +    L     L  
Sbjct: 164 LDVTPQTQLTTLDCSFNKITEL----DVSQNKLLNRLNCDTNNITKLD---LNQNIQLTF 216

Query: 171 LDLSWSEYALQVHSFSWLSGQIPNRLGNLTSLRHLDLSANKFNSTTAGWLSKFNHLEFLS 230
           LD S +    ++             +  LT L + D S N         +S  + L  L 
Sbjct: 217 LDCSSN----KLTEID---------VTPLTQLTYFDCSVNPLTELD---VSTLSKLTTLH 260

Query: 231 LSSNGLQGTISSIGLENLTSIKTIDLSLNFELGGPIPTSFVRLCELTSIDVSDVKLSQDL 290
                L      I L + T +                       ++  +DV+        
Sbjct: 261 CIQTDL----LEIDLTHNTQLIYFQAEGCR--------------KIKELDVT-------- 294

Query: 291 SQVLDILSACGASALESLVFSSSQISGHLTSQLGQFKSLRTLSLDDNCISGPLPPALGDL 350
                       + L  L   ++ I+      L Q   L  L L++  ++  L   +   
Sbjct: 295 ----------HNTQLYLLDCQAAGIT---ELDLSQNPKLVYLYLNNTELTE-LD--VSHN 338

Query: 351 SSLTRLDLSRNMLNGSIPLSLGKISHLEYLDLSNNKM----NGTLSEIHFVNLTKLTWFS 406
           + L  L      +      S+GKI  L     +  +       TL+              
Sbjct: 339 TKLKSLSCVNAHIQ-DFS-SVGKIPALNNNFEAEGQTITMPKETLTNNSLTIAVSPDLLD 396

Query: 407 ASGNSLILQVNPN 419
             GN + ++    
Sbjct: 397 QFGNPMNIEPGDG 409

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 63.9 bits (156), Expect = 8e-11
 Identities = 62/374 (16%), Positives = 106/374 (28%), Gaps = 98/374 (26%)

Query: 353 LTRLDLSRNMLNGSIPLSLGKISHLEYLDLSNNKMNGTLSEIHFVNLTKLTWFSASGN-- 410
                 +   +  +  +S  +++ L  LD  N+ +   ++ I    LT LT    + N  
Sbjct: 20  FASEVAAAFEMQATDTISEEQLATLTSLDCHNSSIT-DMTGIE--KLTGLTKLICTSNNI 76

Query: 411 -SLILQVNPNWVPPFQLKTLLLMSCHLGPQFPSWLHSQKNLSVLDISNARISDTIPRWFW 469
            +L L  N N      L  L   S  L       +     L+ L+    +++        
Sbjct: 77  TTLDLSQNTN------LTYLACDSNKL-TNLD--VTPLTKLTYLNCDTNKLTKL------ 121

Query: 470 NSIFQLSGIIPESFKNFSNLEVLNLGDNEFVGKIPTWMGEGFTSLLILILRSNKFDGFLP 529
                              L  LN   N     +        T L  L    NK    L 
Sbjct: 122 ------------DVSQNPLLTYLNCARN----TLTEIDVSHNTQLTELDCHLNKKITKLD 165

Query: 530 IQLCRLTSLQILDVANNSLSGTMPGCVNNFSAMATIDSSHQSNAMSYFEVTAYDCEVLED 589
           +     T L  LD + N ++               +D S                     
Sbjct: 166 V--TPQTQLTTLDCSFNKIT--------------ELDVSQ-------------------- 189

Query: 590 ASIVMKGSMVEYNSILNLVRIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQIPEN 649
                            L+  ++   NN +    ++L     L  L+ S N  T +I   
Sbjct: 190 ---------------NKLLNRLNCDTNNITK---LDLNQNIQLTFLDCSSNKLT-EID-- 228

Query: 650 IGNLISIESLDFSTNQLSSKISQSMSSLSFLNHLNVSNNLLTGKIPSSTQLQSFDASCFV 709
           +  L  +   D S N L+      +S+LS L  L+     L  +I  +   Q        
Sbjct: 229 VTPLTQLTYFDCSVNPLT---ELDVSTLSKLTTLHCIQTDLL-EIDLTHNTQLIYFQAEG 284

Query: 710 GNNLCGPPLPSCTE 723
              +    +   T+
Sbjct: 285 CRKIKELDVTHNTQ 298

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 59.3 bits (144), Expect = 3e-09
 Identities = 48/291 (16%), Positives = 82/291 (28%), Gaps = 70/291 (24%)

Query: 112 SLVDLKHLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRCL 171
            L     LT LD S N    I +      L  L Y + S      +    L  L+ L C+
Sbjct: 207 DLNQNIQLTFLDCSSNKLTEIDV----TPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCI 262

Query: 172 DLSWSEYALQVHSFSWLSGQIPNRLGNLTSLRHLDLSANKFNSTTAGWLSKFNHLEFLSL 231
                     +             L + T L +               ++    L  L  
Sbjct: 263 Q-------TDLLEID---------LTHNTQLIYFQAEGC--RKIKELDVTHNTQLYLLDC 304

Query: 232 SSNGLQGTISSIGLENLTSIKTIDLSLNFELGGPIPTSFVRLCELTSIDVSDVKLSQDLS 291
            + G    I+ + L     +  + L+                 ELT +DVS         
Sbjct: 305 QAAG----ITELDLSQNPKLVYLYLNNT---------------ELTELDVSHNT------ 339

Query: 292 QVLDILSACGASALESLVFSSSQISGHLTSQLGQFKSLRTLSLDDNCISGPLPPALGDLS 351
                        L+SL   ++ I     S +G+  +L      +      +P      +
Sbjct: 340 ------------KLKSLSCVNAHIQD--FSSVGKIPALNNNFEAEGQTIT-MPKETLTNN 384

Query: 352 SLTR------LDLSRNMLNGSIPLSLGKISHLEYLDLSNNKMNGTLSEIHF 396
           SLT       LD   N +N  I    G +       ++   ++     + +
Sbjct: 385 SLTIAVSPDLLDQFGNPMN--IEPGDGGVYDQATNTITWENLSTDNPAVTY 433

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  106 bits (266), Expect = 3e-25
 Identities = 70/383 (18%), Positives = 120/383 (31%), Gaps = 88/383 (22%)

Query: 118 HLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRCLDLSWSE 177
           HL  +  S    +  ++PK L    +   L+L   +   I      NL NL  L L  ++
Sbjct: 32  HLRVVQCSDLGLE--KVPKDLPP--DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNK 87

Query: 178 -YALQVHSFSWLSGQIPNRLGNLTSLRHLDLSANKFNSTTAGWLSKFNHLEFLSLSSNGL 236
              +   +F+            L  L  L LS N+              L+ L +  N +
Sbjct: 88  ISKISPGAFA-----------PLVKLERLYLSKNQLKELPEKM---PKTLQELRVHENEI 133

Query: 237 QGTISSIGLENLTSIKTIDLSLNFELGGPIPTSFVRLCELTSIDVSDVKLSQDLSQVLDI 296
              +       L  +  ++L  N                L S  + +             
Sbjct: 134 T-KVRKSVFNGLNQMIVVELGTN---------------PLKSSGIENGAFQ--------- 168

Query: 297 LSACGASALESLVFSSSQISGHLTSQLGQFKSLRTLSLDDNCISGPLPPALGDLSSLTRL 356
               G   L  +  + + I+  +   L    SL  L LD N I+     +L  L++L +L
Sbjct: 169 ----GMKKLSYIRIADTNIT-TIPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKL 221

Query: 357 DLSRNMLNGSIPLSLGKISHLEYLDLSNNKMNGTLSEI--HFVNLTKLTWFSASGNSLIL 414
            LS N ++     SL    HL  L L+NNK    L ++     +   +       N+ I 
Sbjct: 222 GLSFNSISAVDNGSLANTPHLRELHLNNNK----LVKVPGGLADHKYIQVVYLHNNN-IS 276

Query: 415 QVNPNWVPPFQLKTLLLMSCHLGPQFPSWLHSQKNLSVLDISNARISDTIPRWFWNSIFQ 474
            +  N   P    T                    + S + + +  +             Q
Sbjct: 277 AIGSNDFCPPGYNTKK-----------------ASYSGVSLFSNPV-------------Q 306

Query: 475 LSGIIPESFKNFSNLEVLNLGDN 497
              I P +F+       + LG+ 
Sbjct: 307 YWEIQPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  104 bits (261), Expect = 2e-24
 Identities = 57/308 (18%), Positives = 97/308 (31%), Gaps = 66/308 (21%)

Query: 117 KHLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRCLDLSWS 176
                LDL  N    I+      +LKNL  L L   + + I P     L  L  L LS  
Sbjct: 52  PDTALLDLQNNKITEIK-DGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK- 109

Query: 177 EYALQVHSFSWLSGQIPNRLGNL-----TSLRHLDLSANKFNSTTAGWLSKFNHLEFLSL 231
                            N+L  L      +L+ L +  N+         +  N +  + L
Sbjct: 110 -----------------NQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVEL 152

Query: 232 SSNGLQ-GTISSIGLENLTSIKTIDLSLNFELGGPIPTSFVRLCELTSIDVSDVKLSQDL 290
            +N L+   I +   + +  +  I ++                  +T+I           
Sbjct: 153 GTNPLKSSGIENGAFQGMKKLSYIRIADT---------------NITTIPQ--------- 188

Query: 291 SQVLDILSACGA-SALESLVFSSSQISGHLTSQLGQFKSLRTLSLDDNCISGPLPPALGD 349
                     G   +L  L    ++I+    + L    +L  L L  N IS     +L +
Sbjct: 189 ----------GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLAN 238

Query: 350 LSSLTRLDLSRNMLNGSIPLSLGKISHLEYLDLSNNKM-----NGTLSEIHFVNLTKLTW 404
              L  L L+ N L   +P  L    +++ + L NN +     N      +       + 
Sbjct: 239 TPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSG 297

Query: 405 FSASGNSL 412
            S   N +
Sbjct: 298 VSLFSNPV 305

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 91.2 bits (227), Expect = 4e-20
 Identities = 57/357 (15%), Positives = 103/357 (28%), Gaps = 89/357 (24%)

Query: 200 TSLRHLDLSANKFNSTTAGWLSKFNHLEFLSLSSNGLQGTISSIGLENLTSIKTIDLSLN 259
                LDL  NK      G      +L  L L +N +   IS      L  ++ + LS N
Sbjct: 52  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS-KISPGAFAPLVKLERLYLSKN 110

Query: 260 FELGGPIPTSFVRLCELTSIDVSDVKLSQDLSQVLDILSACGASALESLVFSSSQISGHL 319
                          +L  +            ++           L+ L    ++I+   
Sbjct: 111 ---------------QLKELP----------EKMP--------KTLQELRVHENEITKVR 137

Query: 320 TSQLGQFKSLRTLSLDDNCI-SGPLPP-ALGDLSSLTRLDLSRNMLNGSIPLSLGKISHL 377
            S       +  + L  N + S  +   A   +  L+ + ++   +  +IP  L     L
Sbjct: 138 KSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGL--PPSL 194

Query: 378 EYLDLSNNKMNGTLSEIHFVNLTKLTWFSASGNSLILQVNPNWVPPFQLKTLLLMSCHLG 437
             L L  NK+   +       L  L     S NS+      + V    L           
Sbjct: 195 TELHLDGNKIT-KVDAASLKGLNNLAKLGLSFNSI------SAVDNGSLANT-------- 239

Query: 438 PQFPSWLHSQKNLSVLDISNARISDTIPRWFWNSIFQLSGIIPESFKNFSNLEVLNLGDN 497
                      +L  L ++N ++                  +P    +   ++V+ L +N
Sbjct: 240 ----------PHLRELHLNNNKLV----------------KVPGGLADHKYIQVVYLHNN 273

Query: 498 --EFVGK---IPTWMGEGFTSLLILILRSNKFDGFLPIQ---LCRLTSLQILDVANN 546
               +G     P        S   + L SN    +  IQ      +     + + N 
Sbjct: 274 NISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ-YWEIQPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 84.3 bits (209), Expect = 9e-18
 Identities = 64/344 (18%), Positives = 113/344 (32%), Gaps = 53/344 (15%)

Query: 328 SLRTLSLDDNCISGPLPPALGDLSSLTRLDLSRNMLNGSIPLSLGKISHLEYLDLSNNKM 387
            LR +   D  +   +P  L        LDL  N +          + +L  L L NNK 
Sbjct: 32  HLRVVQCSDLGLEK-VPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNK- 87

Query: 388 NGTLSEIH---FVNLTKLTWFSASGNSLILQVNPNWVPPFQLKTLLLMSCHLGPQFPSWL 444
              +S+I    F  L KL     S N L  +  P  +P   L+ L +    +     S  
Sbjct: 88  ---ISKISPGAFAPLVKLERLYLSKNQL--KELPEKMPK-TLQELRVHENEITKVRKSVF 141

Query: 445 HSQKNLSVLDISNARISDTIPRWFWNSIFQLSGIIPESFKNFSNLEVLNLGDNEFVGKIP 504
           +    + V+++    +               SGI   +F+    L  + + D      IP
Sbjct: 142 NGLNQMIVVELGTNPLKS-------------SGIENGAFQGMKKLSYIRIADTNIT-TIP 187

Query: 505 TWMGEGFTSLLILILRSNKFDGFLPIQLCRLTSLQILDVANNSLSGTMPGCVNNFSAMAT 564
             +     SL  L L  NK        L  L +L  L ++ NS+S    G + N   +  
Sbjct: 188 QGL---PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRE 244

Query: 565 IDSSHQSNAMSYFEVTAYDCEVLEDASIVMKGSMVEYNSILNLV--RIIDVSKNNFSGEI 622
           +  ++  N +        D + ++               ++ L    I  +  N+F    
Sbjct: 245 LHLNN--NKLVKVPGGLADHKYIQ---------------VVYLHNNNISAIGSNDFCP-- 285

Query: 623 PMELTYLRGLQSLNLSHN-IFTGQIPENI-GNLISIESLDFSTN 664
           P   T       ++L  N +   +I  +    +    ++     
Sbjct: 286 PGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 71.6 bits (176), Expect = 2e-13
 Identities = 40/253 (15%), Positives = 71/253 (28%), Gaps = 66/253 (26%)

Query: 112 SLVDLKHLTHLDLSGNDFQGIRIPK-YLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRC 170
               L  +  ++L  N  +   I       +K L Y+ ++      I     G   +L  
Sbjct: 140 VFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTI---PQGLPPSLTE 196

Query: 171 LDLSWSEYALQVHSFSWLSGQIPNRLGNLTSLRHLDLSANKFNSTTAGWLSKFNHLEFLS 230
           L L       ++             L  L +L  L LS N  ++   G L+   HL  L 
Sbjct: 197 LHLDG----NKITKVD------AASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELH 246

Query: 231 LSSNGLQGTISSIGLENLTSIKTIDLSLNFELGGPIPTSFVRLCELTSIDVSDVKLSQDL 290
           L++N L   +   GL +   I+ + L  N                +++I  +        
Sbjct: 247 LNNNKLV-KVPG-GLADHKYIQVVYLHNN---------------NISAIGSN-------- 281

Query: 291 SQVLDILSACGASALESLVFSSSQISGHLTSQLGQFKSLRTLSLDDNCIS-GPLPP-ALG 348
                              F     +           S   +SL  N +    + P    
Sbjct: 282 ------------------DFCPPGYNTKKA-------SYSGVSLFSNPVQYWEIQPSTFR 316

Query: 349 DLSSLTRLDLSRN 361
            +     + L   
Sbjct: 317 CVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 62.7 bits (153), Expect = 1e-10
 Identities = 51/226 (22%), Positives = 88/226 (38%), Gaps = 34/226 (15%)

Query: 474 QLSGIIPESFKNFSNLEVLNLGDNEFVGKIPTWMGEGFTSLLILILRSNKFDGFLPIQLC 533
           +++ I    FKN  NL  L L +N+   KI          L  L L  N+    LP ++ 
Sbjct: 63  KITEIKDGDFKNLKNLHTLILINNKIS-KISPGAFAPLVKLERLYLSKNQLKE-LPEKM- 119

Query: 534 RLTSLQILDVANNSLSGTMPGCVNNFSAMATIDSSHQSNAMSYFEVTAYDCEVLEDASIV 593
              +LQ L V  N ++       N  + M  ++                    L    + 
Sbjct: 120 -PKTLQELRVHENEITKVRKSVFNGLNQMIVVE--------------------LGTNPL- 157

Query: 594 MKGSMVEYNSILNL--VRIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQIPENI- 650
            K S +E  +   +  +  I ++  N +  IP  L     L  L+L  N  T ++     
Sbjct: 158 -KSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGL--PPSLTELHLDGNKIT-KVDAASL 212

Query: 651 GNLISIESLDFSTNQLSSKISQSMSSLSFLNHLNVSNNLLTGKIPS 696
             L ++  L  S N +S+  + S+++   L  L+++NN L  K+P 
Sbjct: 213 KGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPG 257

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 49.6 bits (119), Expect = 2e-06
 Identities = 17/109 (15%), Positives = 32/109 (29%), Gaps = 22/109 (20%)

Query: 112 SLVDLKHLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSG------AEFAGIIPHQLGNL 165
           SL +  HL  L L+ N     ++P  L   K ++ + L               P      
Sbjct: 235 SLANTPHLRELHLNNNKLV--KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKK 292

Query: 166 SNLRCLDLS---WSEYALQVHSFSWLSGQIPNRLGNLTSLRHLDLSANK 211
           ++   + L       + +Q  +F             +     + L   K
Sbjct: 293 ASYSGVSLFSNPVQYWEIQPSTFR-----------CVYVRAAVQLGNYK 330

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 41.1 bits (97), Expect = 9e-04
 Identities = 15/81 (18%), Positives = 27/81 (33%), Gaps = 11/81 (13%)

Query: 105 LSGN----VNPSLVDLKHLTHLDLSGNDFQGI-----RIPKYLGSLKNLRYLNLSG--AE 153
           L+ N    V   L D K++  + L  N+   I       P Y     +   ++L     +
Sbjct: 247 LNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ 306

Query: 154 FAGIIPHQLGNLSNLRCLDLS 174
           +  I P     +     + L 
Sbjct: 307 YWEIQPSTFRCVYVRAAVQLG 327

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  106 bits (265), Expect = 7e-24
 Identities = 68/359 (18%), Positives = 121/359 (33%), Gaps = 54/359 (15%)

Query: 105 LSGNVNPSLVD--LKHLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQL 162
           +  +   +L D    H+T L +  N+     +P        LR L +SG +    +P   
Sbjct: 47  VGESGLTTLPDCLPAHITTLVIPDNNLT--SLPALPP---ELRTLEVSGNQLT-SLPVLP 100

Query: 163 GNLSNLRCLDLSWSEYALQVHSFSWLS------GQIPNRLGNLTSLRHLDLSANKFNSTT 216
             L  L       +           L         +P     L     L +S N+  S  
Sbjct: 101 PGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLTSLPVLPPGLQE---LSVSDNQLASLP 157

Query: 217 AGWLSKFNHLEFLSLSSNGLQGTISSIGLENLTSIKTIDLSLNFELGGPIPTSFVRLCEL 276
           A      + L  L   +N L  ++        + ++ + +S N +L   +PT      EL
Sbjct: 158 AL----PSELCKLWAYNNQLT-SLP----MLPSGLQELSVSDN-QLAS-LPTL---PSEL 203

Query: 277 TSIDVSDVKLSQDLSQVLDILSACGASALESLVFSSSQISGHLTSQLGQFKSLRTLSLDD 336
             +   + +L+  L  +         S L+ L+ S ++++  L     +   L+ L +  
Sbjct: 204 YKLWAYNNRLTS-LPALP--------SGLKELIVSGNRLT-SLPVLPSE---LKELMVSG 250

Query: 337 NCISGPLPPALGDLSSLTRLDLSRNMLNGSIPLSLGKISHLEYLDLSNNKMNGTLSEIHF 396
           N ++  LP        L  L + RN L   +P SL  +S    ++L  N     LSE   
Sbjct: 251 NRLTS-LPMLPS---GLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNP----LSERTL 301

Query: 397 VNLTKLTWFSASGNSLILQVNPNWVPPFQLKTL-LLMSCHLGPQFPSWLHSQKNLSVLD 454
             L ++T        +I         P + + L L  +  L P             +  
Sbjct: 302 QALREITSAPGYSGPIIRFDMAGASAPRETRALHLAAADWLVPAREGEPAPADRWHMFG 360

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 99.6 bits (248), Expect = 8e-22
 Identities = 71/408 (17%), Positives = 138/408 (33%), Gaps = 99/408 (24%)

Query: 327 KSLRTLSLDDNCISGPLPPALGDLSSLTRLDLSRNMLNGSIPLSLGKISHLEYLDLSNNK 386
                L++ ++ ++  LP  L   + +T L +  N L  S+P        L  L++S N+
Sbjct: 40  NGNAVLNVGESGLTT-LPDCLP--AHITTLVIPDNNLT-SLPALPP---ELRTLEVSGNQ 92

Query: 387 MNGTLSEI--HFVNLTKLTWFSASGNSLILQVNPNWVPPFQLKTLLLMSCHLGPQFPSWL 444
               L+ +      L +L+ FS     L          P  L  L +    L    P   
Sbjct: 93  ----LTSLPVLPPGLLELSIFSNPLTHLPAL-------PSGLCKLWIFGNQLT-SLPVLP 140

Query: 445 HSQKNLSVLDISNARISDTIPRWFWN-SIFQLSG----IIPESFKNFSNLEVLNLGDNEF 499
                L  L +S+ +++ ++P                  +P      S L+ L++ DN+ 
Sbjct: 141 ---PGLQELSVSDNQLA-SLPALPSELCKLWAYNNQLTSLPMLP---SGLQELSVSDNQL 193

Query: 500 VGKIPTWMGEGFTSLLILILRSNKFDGFLPIQLCRLTSLQILDVANNSLSGTMPGCVNNF 559
              +P       + L  L   +N+    LP      + L+ L V+ N L+ ++P      
Sbjct: 194 A-SLP----TLPSELYKLWAYNNRLT-SLPALP---SGLKELIVSGNRLT-SLP------ 237

Query: 560 SAMATIDSSHQSNAMSYFEVTAYDCEVLEDASIVMKGSMVEYNSILNLVRIIDVSKNNFS 619
                                                          L + + VS N  +
Sbjct: 238 ------------------------------------------VLPSEL-KELMVSGNRLT 254

Query: 620 GEIPMELTYLRGLQSLNLSHNIFTGQIPENIGNLISIESLDFSTNQLSSKISQSMSSLSF 679
             +PM  +   GL SL++  N  T ++PE++ +L S  +++   N LS +  Q++  ++ 
Sbjct: 255 -SLPMLPS---GLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREITS 309

Query: 680 LNHLNVSNNLLTGKIPSSTQLQSFDASCFVGNNLCGPPLPSCTENNAR 727
                 S  ++   +  ++  +   A      +   P          R
Sbjct: 310 APGY--SGPIIRFDMAGASAPRETRALHLAAADWLVPAREGEPAPADR 355

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 96.9 bits (241), Expect = 6e-21
 Identities = 65/387 (16%), Positives = 114/387 (29%), Gaps = 86/387 (22%)

Query: 116 LKHLTHLDLSGNDFQGIRIPKYLG------------------SLKNLRYLNLSGAEFAGI 157
                 L++  +      +P  L                       LR L +SG +    
Sbjct: 39  NNGNAVLNVGESGLT--TLPDCLPAHITTLVIPDNNLTSLPALPPELRTLEVSGNQLT-S 95

Query: 158 IPHQLGNLSNLRCLDLSWSEYALQVHSFSWLSGQIPNRLGNL-TSLRHLDLSANKFNSTT 216
           +P     L  L                           L  L + L  L +  N+  S  
Sbjct: 96  LPVLPPGLLELSIFSNPL------------------THLPALPSGLCKLWIFGNQLTSLP 137

Query: 217 AGWLSKFNHLEFLSLSSNGLQGTISSIGLENLTSIKTIDLSLNFELGGPIPTSFVRLCEL 276
                    L+ LS+S N L    +      L  +   +  L       +P     L EL
Sbjct: 138 VL----PPGLQELSVSDNQLASLPALPS--ELCKLWAYNNQLTS-----LPMLPSGLQEL 186

Query: 277 TSIDVSDVKLSQDLSQVLDILSACGASALESLVFSSSQISGHLTSQLGQFKSLRTLSLDD 336
               VSD +L+  L  +         S L  L   +++++  L +       L+ L +  
Sbjct: 187 ---SVSDNQLAS-LPTLP--------SELYKLWAYNNRLT-SLPALPS---GLKELIVSG 230

Query: 337 NCISGPLPPALGDLSSLTRLDLSRNMLNGSIPLSLGKISHLEYLDLSNNKMNGTLSEI-- 394
           N ++  LP        L  L +S N L  S+P+       L  L +  N+    L+ +  
Sbjct: 231 NRLTS-LPVLPS---ELKELMVSGNRLT-SLPMLPSG---LLSLSVYRNQ----LTRLPE 278

Query: 395 HFVNLTKLTWFSASGNSL----ILQVNPNWVPPFQLKTLLLMSCHLGPQFPSWLHSQKNL 450
             ++L+  T  +  GN L    +  +      P     ++               +    
Sbjct: 279 SLIHLSSETTVNLEGNPLSERTLQALREITSAPGYSGPIIRFDMAGASAPRET-RALHLA 337

Query: 451 SVLDISNARISDTIPRWFWNSIFQLSG 477
           +   +  AR  +  P   W+   Q   
Sbjct: 338 AADWLVPAREGEPAPADRWHMFGQEDN 364

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 91.5 bits (227), Expect = 3e-19
 Identities = 68/351 (19%), Positives = 112/351 (31%), Gaps = 92/351 (26%)

Query: 199 LTSLRHLDLSANKFNSTTAGWLSKFNHLEFLSLSSNGLQGTISSIGLENLTSIKTIDLSL 258
                 L++  +   +          H+  L +  N L  ++          ++T+++S 
Sbjct: 39  NNGNAVLNVGESGLTTLPDCL---PAHITTLVIPDNNLT-SLP----ALPPELRTLEVSG 90

Query: 259 NFELGGPIPTSFVRLCELTSIDVSDVKLSQDLSQVLDILSACGASALESLVFSSSQISGH 318
           N +L   +P     L EL+        L    S             L  L    +Q    
Sbjct: 91  N-QLTS-LPVLPPGLLELSIFSNPLTHLPALPSG------------LCKLWIFGNQ---- 132

Query: 319 LTSQLGQFKSLRTLSLDDNCISGPLPPALGDLSSLTRLDLSRNMLNGSIPLSLGKISHLE 378
           LTS       L+ LS+ DN ++  LP        L +L    N L  S+P+     S L+
Sbjct: 133 LTSLPVLPPGLQELSVSDNQLAS-LPALPS---ELCKLWAYNNQLT-SLPML---PSGLQ 184

Query: 379 YLDLSNNKMNGTLSEIHFVNLTKLTWFSASGNSLILQVNPNWVPPFQLKTLLLMSCHLGP 438
            L +S+N+            L  L               P      +L  L   +  L  
Sbjct: 185 ELSVSDNQ------------LASL---------------PTLPS--ELYKLWAYNNRLT- 214

Query: 439 QFPSWLHSQKNLSVLDISNARISDTIPRWFWNSIFQLSGIIPESFKNFSNLEVLNLGDNE 498
             P+       L  L +S  R++                 +P      S L+ L +  N 
Sbjct: 215 SLPALPS---GLKELIVSGNRLTS----------------LPVLP---SELKELMVSGNR 252

Query: 499 FVGKIPTWMGEGFTSLLILILRSNKFDGFLPIQLCRLTSLQILDVANNSLS 549
               +P         LL L +  N+    LP  L  L+S   +++  N LS
Sbjct: 253 LT-SLPMLPS----GLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLS 297

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 47.2 bits (112), Expect = 2e-05
 Identities = 25/98 (25%), Positives = 36/98 (36%), Gaps = 11/98 (11%)

Query: 624 MELTYLRGLQSLNLSHNIFTGQIPENIGNLISIESLDFSTNQLSSKISQSMSSLSFLNHL 683
           M      G   LN+  +  T  +P+ +     I +L    N L+S +    +    L  L
Sbjct: 34  MRACLNNGNAVLNVGESGLT-TLPDCLPA--HITTLVIPDNNLTS-LP---ALPPELRTL 86

Query: 684 NVSNNLLTGKIPSS-TQLQSFDASCFVGNNLCGPPLPS 720
            VS N LT  +P     L           +L  P LPS
Sbjct: 87  EVSGNQLT-SLPVLPPGLLELSIFSNPLTHL--PALPS 121

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  101 bits (254), Expect = 8e-24
 Identities = 56/273 (20%), Positives = 91/273 (33%), Gaps = 48/273 (17%)

Query: 118 HLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSG--AEFAGIIPHQLGNLSNLRCLDLSW 175
             T L+L  N  Q +        L  L  L+LS     F G         ++L+ LDLS+
Sbjct: 29  SATRLELESNKLQSLP-HGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF 87

Query: 176 SEYALQVHSFSWLSGQIPNRLGNLTSLRHLDLSANKFNS-TTAGWLSKFNHLEFLSLSSN 234
           +               + +    L  L HLD   +     +         +L +L +S  
Sbjct: 88  NGVI-----------TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT 136

Query: 235 GLQGTISSIGLENLTSIKTIDLSLNFELGGPIPTSFVRLCELTSIDVSDVKLSQDLSQVL 294
             +    +     L+S++ + ++ N      +P  F  L  LT +D              
Sbjct: 137 HTR-VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLD-------------- 181

Query: 295 DILSACGASALESLVFSSSQISGHLTSQLGQFKSLRTLSLDDNCISGPLPPALGDLSSLT 354
             LS C    L    F+S               SL+ L++  N            L+SL 
Sbjct: 182 --LSQCQLEQLSPTAFNS-------------LSSLQVLNMSHNNFFSLDTFPYKCLNSLQ 226

Query: 355 RLDLSRNMLNGSIPLSL--GKISHLEYLDLSNN 385
            LD S N +  +          S L +L+L+ N
Sbjct: 227 VLDYSLNHIM-TSKKQELQHFPSSLAFLNLTQN 258

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 93.5 bits (233), Expect = 5e-21
 Identities = 69/274 (25%), Positives = 103/274 (37%), Gaps = 29/274 (10%)

Query: 191 QIPNRLGNLTSLRHLDLSANKFNSTTAGWLSKFNHLEFLSLSSNGLQ-GTISSIGLENLT 249
            +P  +   +S   L+L +NK  S   G   K   L  LSLSSNGL      S      T
Sbjct: 21  SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTT 78

Query: 250 SIKTIDLSLNFELGGPIPTSFVRLCELTSIDVSDVKLSQDLSQVLDILSACGA----SAL 305
           S+K +DLS N  +   + ++F+ L +L  +D     L Q        +S          L
Sbjct: 79  SLKYLDLSFN-GVIT-MSSNFLGLEQLEHLDFQHSNLKQ--------MSEFSVFLSLRNL 128

Query: 306 ESLVFSSSQISGHLTSQLGQFKSLRTLSLDDNCISGPLPP-ALGDLSSLTRLDLSRNMLN 364
             L  S +              SL  L +  N       P    +L +LT LDLS+  L 
Sbjct: 129 IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE 188

Query: 365 GSIPLSLGKISHLEYLDLSNNKMNGTLSEIHFVNLTKLTWFSASGNSLILQVNPNWVPPF 424
              P +   +S L+ L++S+N    +L    +  L  L     S N ++       +  F
Sbjct: 189 QLSPTAFNSLSSLQVLNMSHNNFF-SLDTFPYKCLNSLQVLDYSLNHIM-TSKKQELQHF 246

Query: 425 --QLKTLLLM------SCHLGPQFPSWLHSQKNL 450
              L  L L       +C     F  W+  Q+ L
Sbjct: 247 PSSLAFLNLTQNDFACTCEHQS-FLQWIKDQRQL 279

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 87.4 bits (217), Expect = 6e-19
 Identities = 54/227 (23%), Positives = 88/227 (38%), Gaps = 20/227 (8%)

Query: 326 FKSLRTLSLDDNCISGPLPPALGDLSSLTRLDLSRNMLN--GSIPLSLGKISHLEYLDLS 383
             S   L L+ N +          L+ LT+L LS N L+  G    S    + L+YLDLS
Sbjct: 27  PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS 86

Query: 384 NNKMNGTLSEIHFVNLTKLTWFSASGNSL-ILQVNPNWVPPFQLKTLLLMSCHLGPQFPS 442
            N +  T+S  +F+ L +L       ++L  +     ++    L  L +   H    F  
Sbjct: 87  FNGVI-TMSS-NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNG 144

Query: 443 WLHSQKNLSVLDISNARISDTIPRWFWNSIFQLSGIIPESFKNFSNLEVLNLGDNEFVGK 502
             +   +L VL ++             NS       +P+ F    NL  L+L   +   +
Sbjct: 145 IFNGLSSLEVLKMAG------------NSF--QENFLPDIFTELRNLTFLDLSQCQLE-Q 189

Query: 503 IPTWMGEGFTSLLILILRSNKFDGFLPIQLCRLTSLQILDVANNSLS 549
           +        +SL +L +  N F          L SLQ+LD + N + 
Sbjct: 190 LSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM 236

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 80.1 bits (198), Expect = 2e-16
 Identities = 54/253 (21%), Positives = 93/253 (36%), Gaps = 29/253 (11%)

Query: 305 LESLVFSSSQISGHLTSQLGQFKSLRTLSLDDNCIS--GPLPPALGDLSSLTRLDLSRNM 362
              L   S+++         +   L  LSL  N +S  G    +    +SL  LDLS N 
Sbjct: 30  ATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG 89

Query: 363 LNGSIPLSLGKISHLEYLDLSNNKMNGTLSEIHFVNLTKLTWFSASGNSLILQVNPNWVP 422
           +  ++  +   +  LE+LD  ++ +        F++L  L +   S              
Sbjct: 90  VI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR-VAFNGI-- 145

Query: 423 PFQ----LKTLLLMSCHLGPQFPS-WLHSQKNLSVLDISNARISDTIPRWFWNSIFQLSG 477
            F     L+ L +        F        +NL+ LD+S                 QL  
Sbjct: 146 -FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ------------C---QLEQ 189

Query: 478 IIPESFKNFSNLEVLNLGDNEFVGKIPTWMGEGFTSLLILILRSNKFDGFLPIQLCRL-T 536
           + P +F + S+L+VLN+  N F   + T+  +   SL +L    N        +L    +
Sbjct: 190 LSPTAFNSLSSLQVLNMSHNNFF-SLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPS 248

Query: 537 SLQILDVANNSLS 549
           SL  L++  N  +
Sbjct: 249 SLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 79.3 bits (196), Expect = 4e-16
 Identities = 37/159 (23%), Positives = 71/159 (44%), Gaps = 14/159 (8%)

Query: 105 LSGN----VNPSLVDLKHLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPH 160
           LS N    ++ + + L+ L HLD   ++ + +       SL+NL YL++S          
Sbjct: 85  LSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNG 144

Query: 161 QLGNLSNLRCLDLSWSEYALQVHSFSWLSGQIPNRLGNLTSLRHLDLSANKFNSTTAGWL 220
               LS+L  L ++ +         S+    +P+    L +L  LDLS  +    +    
Sbjct: 145 IFNGLSSLEVLKMAGN---------SFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAF 195

Query: 221 SKFNHLEFLSLSSNGLQGTISSIGLENLTSIKTIDLSLN 259
           +  + L+ L++S N    ++ +   + L S++ +D SLN
Sbjct: 196 NSLSSLQVLNMSHNNFF-SLDTFPYKCLNSLQVLDYSLN 233

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 66.6 bits (163), Expect = 6e-12
 Identities = 63/340 (18%), Positives = 106/340 (31%), Gaps = 92/340 (27%)

Query: 352 SLTRLDLSRNMLNGSIPLSLGKISHLEYLDLSNNKMNGTLSEIHFVNLTKLTWFSASGNS 411
           S T +  +   L  S+P  +   S    L+L +NK+  +L    F  LT+LT  S S N 
Sbjct: 8   SGTEIRCNSKGLT-SVPTGIP--SSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNG 63

Query: 412 LILQVNPNWVPPFQLKTLLLMSCHLGPQFPSWLHSQKNLSVLDISNARISDTIPRWFWNS 471
           L  +                                 +L  LD+S   +           
Sbjct: 64  LSFKG----CCSQSDFGT------------------TSLKYLDLSFNGVI---------- 91

Query: 472 IFQLSGIIPESFKNFSNLEVLNLGDNEFVGKIPTWMGEGFTSLLILILRSNKFDGFLPIQ 531
                  +  +F     LE L+   +         +     +L+ L +            
Sbjct: 92  ------TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGI 145

Query: 532 LCRLTSLQILDVANNSLSGTMPGCVNNFSAMATIDSSHQSNAMSYFEVTAYDCEVLEDAS 591
              L+SL++L +A NS         + F+ +                             
Sbjct: 146 FNGLSSLEVLKMAGNSFQENFLP--DIFTELR---------------------------- 175

Query: 592 IVMKGSMVEYNSILNLVRIIDVSKNNFSGEIPME-LTYLRGLQSLNLSHNIFTGQIPENI 650
                         NL   +D+S+     ++       L  LQ LN+SHN F   +    
Sbjct: 176 --------------NL-TFLDLSQCQLE-QLSPTAFNSLSSLQVLNMSHNNFF-SLDTFP 218

Query: 651 -GNLISIESLDFSTNQLSSKISQSMSSL-SFLNHLNVSNN 688
              L S++ LD+S N + +   Q +    S L  LN++ N
Sbjct: 219 YKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN 258

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 61.2 bits (149), Expect = 3e-10
 Identities = 44/222 (19%), Positives = 77/222 (34%), Gaps = 28/222 (12%)

Query: 474 QLSGIIPESFKNFSNLEVLNLGDNEF-VGKIPTWMGEGFTSLLILILRSNKFDGFLPIQL 532
           +L  +    F   + L  L+L  N        +    G TSL  L L  N     +    
Sbjct: 39  KLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGV-ITMSSNF 97

Query: 533 CRLTSLQILDVANNSLSGTMPGCV-NNFSAMATIDSSHQSNAMSYFEVTAYDCEVLEDAS 591
             L  L+ LD  +++L       V  +   +  +D SH            ++        
Sbjct: 98  LGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISH--THTRVAFNGIFNG------- 148

Query: 592 IVMKGSMVEYNSILNLVRIIDVSKNNFSGEIPME-LTYLRGLQSLNLSHNIFTGQIPENI 650
                        L+ + ++ ++ N+F      +  T LR L  L+LS      Q+    
Sbjct: 149 -------------LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE-QLSPTA 194

Query: 651 -GNLISIESLDFSTNQLSSKISQSMSSLSFLNHLNVSNNLLT 691
             +L S++ L+ S N   S  +     L+ L  L+ S N + 
Sbjct: 195 FNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM 236

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 49.6 bits (119), Expect = 2e-06
 Identities = 46/190 (24%), Positives = 74/190 (38%), Gaps = 13/190 (6%)

Query: 511 FTSLLILILRSNKFDGFLPIQLCRLTSLQILDVANNSLS--GTMPGCVNNFSAMATIDSS 568
            +S   L L SNK          +LT L  L +++N LS  G         +++  +D S
Sbjct: 27  PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS 86

Query: 569 HQSNAMSYFEVTAYDCEVLEDASIVMKG----SMVEYNSILNLV--RIIDVSKNNFSGEI 622
              N +          E LE   +  +      M E++  L+L     +D+S  +     
Sbjct: 87  F--NGVITMSSNFLGLEQLE--HLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAF 142

Query: 623 PMELTYLRGLQSLNLSHNIFTGQIPENI-GNLISIESLDFSTNQLSSKISQSMSSLSFLN 681
                 L  L+ L ++ N F      +I   L ++  LD S  QL      + +SLS L 
Sbjct: 143 NGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQ 202

Query: 682 HLNVSNNLLT 691
            LN+S+N   
Sbjct: 203 VLNMSHNNFF 212

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  103 bits (258), Expect = 2e-23
 Identities = 78/411 (18%), Positives = 135/411 (32%), Gaps = 75/411 (18%)

Query: 112 SLVDLKHLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRCL 171
           S   L+ L  L +       +        L +L  L L   +F  +       L+NL  L
Sbjct: 49  SFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVL 108

Query: 172 DLSWSEYALQVHSFSWLSGQIPNRL-GNLTSLRHLDLSANKFNSTT-AGWLSKFNHLEFL 229
            L+     L           +       LTSL  L L  N       A +         L
Sbjct: 109 TLTQCN--LD-------GAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVL 159

Query: 230 SLSSNGLQGTISSIGLENLTSIKTIDLSL---------NFELGGPIPTSFVRLCELTSID 280
            L+ N ++ +I    L N        L L          + LG     +  +   +T++D
Sbjct: 160 DLTFNKVK-SICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLD 218

Query: 281 VSDVKLSQDLSQVLDILSACGASALESLVFSSSQISG------------HLTSQLGQFKS 328
           +S     + +++      A   + ++SL+ S+S   G            + T +  +   
Sbjct: 219 LSGNGFKESMAKRFF--DAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASG 276

Query: 329 LRTLSLDDNCISGPLPPALGDLSSLTRLDLSRNMLNGSIPLSLGKISHLEYLDLSNNKMN 388
           ++T  L  + I   L       + L +L L++N +N     +   ++HL  L+LS N + 
Sbjct: 277 VKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFL- 335

Query: 389 GTLSEIHFVNLTKLTWFSASGNSLILQVNPNWVPPFQLKTLLLMSCHLGPQFPSWLHSQK 448
           G++    F NL KL         L L  N        ++ L                   
Sbjct: 336 GSIDSRMFENLDKLEV-------LDLSYN-------HIRALG----------DQSFLGLP 371

Query: 449 NLSVLDISNARISDTIPRWFWNSIFQLSGIIPESFKNFSNLEVLNLGDNEF 499
           NL  L +              N   QL  +    F   ++L+ + L  N +
Sbjct: 372 NLKELALDT------------N---QLKSVPDGIFDRLTSLQKIWLHTNPW 407

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  100 bits (252), Expect = 1e-22
 Identities = 78/434 (17%), Positives = 147/434 (33%), Gaps = 73/434 (16%)

Query: 143 NLRYLNLSGAEFAGIIPHQLGNLSNLRCLDLSWSEYALQVHSFSWLSGQIPNRLGNLTSL 202
           ++ Y++LS    A +       L +L+ L +      L +           N    L+SL
Sbjct: 31  HVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIR---------NNTFRGLSSL 81

Query: 203 RHLDLSANKFNSTTAGWLSKFNHLEFLSLSSNGLQGTISSIGL-ENLTSIKTIDLSLN-- 259
             L L  N+F     G  +   +LE L+L+   L G + S    + LTS++ + L  N  
Sbjct: 82  IILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNI 141

Query: 260 --FELGGPIPTSFVRLCELTSIDVSDVKLSQDLSQVLDILSACGASALESLVFSSSQISG 317
              +        F+ +     +D++  K+     + L             L  SS  +  
Sbjct: 142 KKIQPAS----FFLNMRRFHVLDLTFNKVKSICEEDLLNFQ---GKHFTLLRLSSITL-- 192

Query: 318 HLTSQLGQFKSLRTLSLDDNCISGPLPPALGDLSSLTRLDLSRNMLNGSIP---LSLGKI 374
                           +++  +           +S+T LDLS N    S+          
Sbjct: 193 --------------QDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAG 238

Query: 375 SHLEYLDLSNN-KMNGTLSEIHFVNLTKLTWFSASGNSL-ILQVNPNWVPPFQLKTLLLM 432
           + ++ L LSN+  M  +    +F +    T+     + +    ++ +     ++      
Sbjct: 239 TKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKS-----KIFA---- 289

Query: 433 SCHLGPQFPSWLHSQKNLSVLDISNARISDTIPRWFWNSIFQLSGIIPESFKNFSNLEVL 492
              L     S      +L  L ++             N   +++ I   +F   ++L  L
Sbjct: 290 ---LLKSVFSHF---TDLEQLTLAQ------------N---EINKIDDNAFWGLTHLLKL 328

Query: 493 NLGDNEFVGKIPTWMGEGFTSLLILILRSNKFDGFLPIQLCRLTSLQILDVANNSLSGTM 552
           NL  N   G I + M E    L +L L  N            L +L+ L +  N L    
Sbjct: 329 NLSQNFL-GSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVP 387

Query: 553 PGCVNNFSAMATID 566
            G  +  +++  I 
Sbjct: 388 DGIFDRLTSLQKIW 401

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 86.3 bits (214), Expect = 7e-18
 Identities = 66/361 (18%), Positives = 119/361 (32%), Gaps = 50/361 (13%)

Query: 351 SSLTRLDLSRNMLNGSIPLSLGKISHLEYLDLSNNKMNGTLSEIHFVNLTKLTWFSASGN 410
           + +  +DLS N +      S  ++  L++L +        +    F  L+ L       N
Sbjct: 30  AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89

Query: 411 SLILQVNPNWVPP------FQLKTLLLMSCHLGPQF--PSWLHSQKNLSVLDISNARISD 462
                     +          L+ L L  C+L       ++     +L +L + +     
Sbjct: 90  QF------LQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRD----- 138

Query: 463 TIPRWFWNSIFQLSGIIPES-FKNFSNLEVLNLGDNEFVGKIP--TWMGEGFTSLLILIL 519
                  N    +  I P S F N     VL+L  N+    I     +        +L L
Sbjct: 139 -------N---NIKKIQPASFFLNMRRFHVLDLTFNKVK-SICEEDLLNFQGKHFTLLRL 187

Query: 520 RSNKFDGFLPIQLC--------RLTSLQILDVANNSLSGTMPGCVNNFSAMATIDSSHQS 571
            S          L         + TS+  LD++ N    +M     +  A   I S   S
Sbjct: 188 SSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILS 247

Query: 572 NAMSYFEVTAYDCEVLEDASIVMKGSMVEYNSILNLVRIIDVSKNNFSGEIPMELTYLRG 631
           N+ +               +     +        + V+  D+SK+     +    ++   
Sbjct: 248 NSYNMG-------SSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTD 300

Query: 632 LQSLNLSHNIFTGQIPENI-GNLISIESLDFSTNQLSSKISQSMSSLSFLNHLNVSNNLL 690
           L+ L L+ N    +I +N    L  +  L+ S N L S  S+   +L  L  L++S N +
Sbjct: 301 LEQLTLAQNEIN-KIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHI 359

Query: 691 T 691
            
Sbjct: 360 R 360

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 85.6 bits (212), Expect = 1e-17
 Identities = 72/395 (18%), Positives = 117/395 (29%), Gaps = 72/395 (18%)

Query: 328 SLRTLSLDDNCISGPLPPALGDLSSLTRLDLSRNMLNGSIPL-SLGKISHLEYLDLSNNK 386
            +  + L  N I+     +   L  L  L + +      I   +   +S L  L L  N+
Sbjct: 31  HVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQ 90

Query: 387 MNGTLSEIHFVNLTKLTWFSASGNSLILQVNPNWVPPFQLKTLLLMSCHLGPQFPSWLHS 446
               L    F  L  L   + +  +L   V                         ++   
Sbjct: 91  F-LQLETGAFNGLANLEVLTLTQCNLDGAVLS----------------------GNFFKP 127

Query: 447 QKNLSVLDISNARISDTIPRWFWNSIFQLSGIIPES-FKNFSNLEVLNLGDNEFVGKIP- 504
             +L +L + +            N    +  I P S F N     VL+L  N+    I  
Sbjct: 128 LTSLEMLVLRD------------N---NIKKIQPASFFLNMRRFHVLDLTFNKVK-SICE 171

Query: 505 -TWMGEGFTSLLILILRSNKFDGFLPIQLC--------RLTSLQILDVANNSLSGTMPGC 555
              +        +L L S          L         + TS+  LD++ N    +M   
Sbjct: 172 EDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKR 231

Query: 556 VNNFSAMATIDSSHQSNAMSYFEVTAYDCEVLEDASIVMKGSMV-------EYNSI---- 604
             +  A   I S   SN+ +      +      D                   + I    
Sbjct: 232 FFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALL 291

Query: 605 ------LNLVRIIDVSKNNFSGEIPME-LTYLRGLQSLNLSHNIFTGQIPENI-GNLISI 656
                    +  + +++N  + +I       L  L  LNLS N     I   +  NL  +
Sbjct: 292 KSVFSHFTDLEQLTLAQNEIN-KIDDNAFWGLTHLLKLNLSQNFLGS-IDSRMFENLDKL 349

Query: 657 ESLDFSTNQLSSKISQSMSSLSFLNHLNVSNNLLT 691
           E LD S N + +   QS   L  L  L +  N L 
Sbjct: 350 EVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLK 384

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 60.5 bits (147), Expect = 9e-10
 Identities = 54/285 (18%), Positives = 92/285 (32%), Gaps = 59/285 (20%)

Query: 81  SLRNPFRNDLRYATTEYEDYMRSMLSGNVNPSLVDLKHLTHLDLSGNDFQGIRIPKYLGS 140
           + +      LR ++   +D     L      +      +T LDLSGN F+     ++  +
Sbjct: 176 NFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDA 235

Query: 141 LKNLR----YLNLSGAEFAGIIPHQLGNLSNLRCLDLSWSEYALQVHSFSWLSGQIPNRL 196
           +   +     L+ S    +        +  N     L                       
Sbjct: 236 IAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEA--------------------- 274

Query: 197 GNLTSLRHLDLSANKFNSTTAGWLSKFNHLEFLSLSSNGLQGTISSIGLENLTSIKTIDL 256
              + ++  DLS +K  +      S F  LE L+L+ N +   I       LT +  ++L
Sbjct: 275 ---SGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEIN-KIDDNAFWGLTHLLKLNL 330

Query: 257 SLNFELGGPIPTSFVRLCELTSIDVSDVKLSQDLSQVLDILSACGASALESLVFSSSQIS 316
           S N  LG      F  L +L  +D+S   +                 AL    F      
Sbjct: 331 SQN-FLGSIDSRMFENLDKLEVLDLSYNHI----------------RALGDQSFL----- 368

Query: 317 GHLTSQLGQFKSLRTLSLDDNCISGPLPPALGDLSSLTRLDLSRN 361
             L        +L+ L+LD N +          L+SL ++ L  N
Sbjct: 369 -GLP-------NLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 405

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 54.0 bits (130), Expect = 1e-07
 Identities = 39/245 (15%), Positives = 85/245 (34%), Gaps = 22/245 (8%)

Query: 474 QLSGIIPESFKNFSNLEVLNLGDNEFVGKIPTWMGEGFTSLLILILRSNKFDGFLPIQLC 533
            ++ +   SF    +L+ L +        I      G +SL+IL L  N+F         
Sbjct: 41  SIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFN 100

Query: 534 RLTSLQILDVANNSLSGTM--PGCVNNFSAMATIDSSHQSNAMSYFEVTAYDCEVLEDAS 591
            L +L++L +   +L G +         +++  +      N +   +  ++         
Sbjct: 101 GLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRD--NNIKKIQPASFFL------- 151

Query: 592 IVMKGSMVEYNSI-LNLVRIIDVSKNNFSGEIPMELTYLR--GLQSLNLSHNIFTGQIPE 648
                +M  ++ + L   ++  + + +         T LR   +   +++      +   
Sbjct: 152 -----NMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCG 206

Query: 649 NIGNLISIESLDFSTNQLSSKISQSMSSL---SFLNHLNVSNNLLTGKIPSSTQLQSFDA 705
           N     SI +LD S N     +++        + +  L +SN+   G     T  +  D 
Sbjct: 207 NPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDN 266

Query: 706 SCFVG 710
             F G
Sbjct: 267 FTFKG 271

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 41.7 bits (98), Expect = 8e-04
 Identities = 19/90 (21%), Positives = 34/90 (37%), Gaps = 1/90 (1%)

Query: 603 SILNLVRIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQIPENI-GNLISIESLDF 661
            +   V  +D+S N+ +       + L+ LQ L +        I  N    L S+  L  
Sbjct: 27  ELPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKL 86

Query: 662 STNQLSSKISQSMSSLSFLNHLNVSNNLLT 691
             NQ     + + + L+ L  L ++   L 
Sbjct: 87  DYNQFLQLETGAFNGLANLEVLTLTQCNLD 116

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score =  100 bits (250), Expect = 4e-22
 Identities = 85/421 (20%), Positives = 144/421 (34%), Gaps = 41/421 (9%)

Query: 116 LKHLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRCLDLSW 175
           +  L HLDLS NDF  + + K  G+L  L +L LS A+F      +  +L  +  L LS 
Sbjct: 120 MASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKF------RQLDLLPVAHLHLSC 173

Query: 176 SEYALQVHSFSWLSGQIPNRLGNLTSLRHLDLSANKFNSTTAGWLSKFNHLEFLSLSSNG 235
               L  +      G+  +     T++ HL    N   S         N L  L LS+  
Sbjct: 174 ILLDLVSYHIK--GGETESLQIPNTTVLHLVFHPNSLFS--VQVNMSVNALGHLQLSNIK 229

Query: 236 LQGTISSIGLENLTSIKTIDLSLNFELGGPIPT--------SFVRLCELTSIDVSDVKLS 287
           L        +  L+ +      LN  L     T         F     +  +++ ++ ++
Sbjct: 230 LNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTIT 289

Query: 288 QDLSQVLDILSACGASALESLVFSSSQISGHLTSQLGQFKSLRTLSLDDNCISGPLPPAL 347
           + + +     S     +L      +        +    F  +    L  +          
Sbjct: 290 ERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCP 349

Query: 348 GDLSSLTRLDLSRNMLNGSIPLSLGKISHLEYLDLSNNKMNGTLSEI--HFVNLTKLTWF 405
              SS T L+ ++N+   S+      +  L+ L L  N +     ++     N++ L   
Sbjct: 350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLK-NFFKVALMTKNMSSLETL 408

Query: 406 SASGNSLILQVNPNWVP-PFQLKTLLLMSCHLGPQFPSWLHSQKNLSVLDISNARISDTI 464
             S NSL              +  L L S  L       L     + VLD+ N RI    
Sbjct: 409 DVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPP--KVKVLDLHNNRIMS-- 464

Query: 465 PRWFWNSIFQLSGIIPESFKNFSNLEVLNLGDNEFVGKIPTWMGEGFTSLLILILRSNKF 524
                         IP+   +   L+ LN+  N+    +P  + +  TSL  + L  N +
Sbjct: 465 --------------IPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNPW 509

Query: 525 D 525
           D
Sbjct: 510 D 510

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 96.1 bits (239), Expect = 9e-21
 Identities = 81/476 (17%), Positives = 145/476 (30%), Gaps = 52/476 (10%)

Query: 118 HLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRCLDLSWSE 177
               L LS N    +R    +  L  LR L LS      +  H      +L  LD+S + 
Sbjct: 53  RTKALSLSQNSISELR-MPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHN- 110

Query: 178 YALQVHSFSWLSGQIPNRLGNLTSLRHLDLSANKFNS-TTAGWLSKFNHLEFLSLSSNGL 236
              ++ + S            + SLRHLDLS N F+             L FL LS+   
Sbjct: 111 ---RLQNISC---------CPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKF 158

Query: 237 QGTISSIGLENLTSIKTIDLSLNFELGGPIPTSFVRLCELTSIDVSDVKLSQDL--SQVL 294
           +     + L  +  +    + L+             L    +  +  V     L   QV 
Sbjct: 159 R----QLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVN 214

Query: 295 DILSACGASALESLVFSSSQISGHLTSQLGQFKSLRTLSLDDNCISGPLPPALGDL---- 350
             ++A G   L ++  +       +T      +    L++    I      ++       
Sbjct: 215 MSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFW 274

Query: 351 -SSLTRLDLSRNMLNGSIPLSLGKISH-----LEYLDLSNNKMNGTLSEIHFVNLTKLTW 404
              +  L++    +   I       S      L    + N        E  +    ++  
Sbjct: 275 PRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFL-FSKEALYSVFAEMNI 333

Query: 405 FSASGNSLILQVNPNWVP--PFQLKTLLLMSCHLGPQFPSWLHSQKNLSVLDISNARISD 462
              S +           P  P     L                + K L  L +    + +
Sbjct: 334 KMLSISD--TPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKN 391

Query: 463 -----------TIPRWFWNSIFQL-SGIIPESFKNFSNLEVLNLGDNEFVGKIPTWMGEG 510
                      +       S+  L S     +     ++ VLNL  N   G +   +   
Sbjct: 392 FFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP-- 449

Query: 511 FTSLLILILRSNKFDGFLPIQLCRLTSLQILDVANNSLSGTMPGCVNNFSAMATID 566
              + +L L +N+    +P  +  L +LQ L+VA+N L     G  +  +++  I 
Sbjct: 450 -PKVKVLDLHNNRIMS-IPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIW 503

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 94.2 bits (234), Expect = 3e-20
 Identities = 92/494 (18%), Positives = 168/494 (34%), Gaps = 63/494 (12%)

Query: 198 NLTSLRHLDLSANKFNSTTAGWLSKFNHLEFLSLSSNGLQGTISSIGLENLTSIKTIDLS 257
            L+ LR L LS N+  S           LE+L +S N LQ    +I    + S++ +DLS
Sbjct: 74  FLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ----NISCCPMASLRHLDLS 129

Query: 258 LNFELGGPIPTSFVRLCELTSIDVSDVKL-SQDLSQVLDILSACGASALESLVFSSSQIS 316
            N     P+   F  L +LT + +S  K    DL  V  +  +C    L S      +  
Sbjct: 130 FNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGE-- 187

Query: 317 GHLTSQLGQFKSLRTLSLDDNCISGPLPPALGDLSSLTRLDLSRNMLNGSIPLSLGKISH 376
               ++  Q  +   L L  +  S         +++L  L LS         + L   + 
Sbjct: 188 ----TESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLS--------NIKLNDENC 235

Query: 377 LEYLDLSNNKMNGTLSEIHFVNLTKLTWFSASGNSLILQVNPNWVPPFQLKTLLLMSCHL 436
              +   +    G         L  +T                +  P  ++ L + +  +
Sbjct: 236 QRLMTFLSELTRGP-------TLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTI 288

Query: 437 G--PQFPSWLHSQKNLSVLDISNARISDTIPRWFWNSIFQLSGIIPESFKNFSNLEVLNL 494
                   + +S+  L  L I +                         +  F+ + +  L
Sbjct: 289 TERIDREEFTYSETALKSLMIEH------------VKNQVFLFSKEALYSVFAEMNIKML 336

Query: 495 GDNEFVGKIPTWMGEGFTSLLILILRSNKFDGFLPIQLCRLTSLQILDVANNSLSGTMPG 554
             ++    I        +S   L    N F   +      L  LQ L +  N L      
Sbjct: 337 SISD-TPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLK-NFFK 394

Query: 555 CVNNFSAMATIDSSHQSNAMSYFEVTAYDCEVLEDASIVMKGSMVEYNSILNLVRIIDVS 614
                  M+++       +++     AYD       SI+          +LNL      S
Sbjct: 395 VALMTKNMSSL--ETLDVSLNSLNSHAYDRTCAWAESIL----------VLNL------S 436

Query: 615 KNNFSGEIPMELTYLRGLQSLNLSHNIFTGQIPENIGNLISIESLDFSTNQLSSKISQSM 674
            N  +G +   L     ++ L+L +N     IP+++ +L +++ L+ ++NQL S      
Sbjct: 437 SNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVF 493

Query: 675 SSLSFLNHLNVSNN 688
             L+ L ++ + +N
Sbjct: 494 DRLTSLQYIWLHDN 507

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 54.5 bits (131), Expect = 9e-08
 Identities = 25/122 (20%), Positives = 50/122 (40%), Gaps = 13/122 (10%)

Query: 113 LVDLKHLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRCLD 172
             ++  L  LD+S N        +     +++  LNLS     G +   L     ++ LD
Sbjct: 399 TKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCL--PPKVKVLD 456

Query: 173 LSWSEYALQVHSFSWLSGQIPNRLGNLTSLRHLDLSANKFNSTTAGWLSKFNHLEFLSLS 232
           L  +   +           IP  + +L +L+ L++++N+  S   G   +   L+++ L 
Sbjct: 457 LHNNR--IM---------SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLH 505

Query: 233 SN 234
            N
Sbjct: 506 DN 507

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 97.3 bits (243), Expect = 2e-21
 Identities = 90/478 (18%), Positives = 147/478 (30%), Gaps = 85/478 (17%)

Query: 117 KHLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLS----GAEFAGIIPHQLGNLSNLRCLD 172
             +  LD+   +    R  + L  L+  + + L            I   L     L  L+
Sbjct: 3   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 62

Query: 173 LSWSEYALQVHSFSWLSGQIPNRLGNLTSLRHLDLSANKFNSTTAGW------LSKFNHL 226
           L  +E  L       +   +         ++ L L       T AG       L     L
Sbjct: 63  LRSNE--LGDVGVHCVLQGLQT---PSCKIQKLSLQNCCL--TGAGCGVLSSTLRTLPTL 115

Query: 227 EFLSLSSNGLQGT----ISSIGLENLTSIKTIDLSLN---FELGGPIPTSFVRLCELTSI 279
           + L LS N L       +    L+    ++ + L           P+ +      +   +
Sbjct: 116 QELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKEL 175

Query: 280 DVSDVKLS-QDLSQVLDILSACGASALESLVFSSSQIS----GHLTSQLGQFKSLRTLSL 334
            VS+  ++   +  +   L       LE+L   S  ++      L   +    SLR L+L
Sbjct: 176 TVSNNDINEAGVRVLCQGLKDSPCQ-LEALKLESCGVTSDNCRDLCGIVASKASLRELAL 234

Query: 335 DDNCISGP----LPPALGD-LSSLTRLDLSRNMLN----GSIPLSLGKISHLEYLDLSNN 385
             N +       L P L    S L  L +    +     G +   L     L+ L L+ N
Sbjct: 235 GSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGN 294

Query: 386 KMNGTLSEIHFVNLTKLTWFSASGNSLILQV--NPNWVPPFQLKTLLLMSCHLGPQ---- 439
           ++                     G  L+ +    P      QL++L + SC         
Sbjct: 295 EL------------------GDEGARLLCETLLEPGC----QLESLWVKSCSFTAACCSH 332

Query: 440 FPSWLHSQKNLSVLDISNARISDTIPRWFWNSIFQLSGIIPESFKNFSNLEVLNLGDNEF 499
           F S L   + L  L ISN R+ D   R     + Q            S L VL L D + 
Sbjct: 333 FSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPG----------SVLRVLWLADCDV 382

Query: 500 VGKIPTWMGEGF---TSLLILILRSNKFDGFLPIQLCRL-----TSLQILDVANNSLS 549
                + +        SL  L L +N       +QL          L+ L + +   S
Sbjct: 383 SDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWS 440

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 86.2 bits (214), Expect = 7e-18
 Identities = 67/401 (16%), Positives = 121/401 (30%), Gaps = 62/401 (15%)

Query: 113 LVDLKHLTHLDLSGNDFQGIRIPKYLGSLKN----LRYLNLS----GAEFAGIIPHQLGN 164
           L     L  L+L  N+   + +   L  L+     ++ L+L          G++   L  
Sbjct: 52  LRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRT 111

Query: 165 LSNLRCLDLSWSEYALQVHSFSWLSGQIPNRLGNLTSLRHLDLSANKFNSTTAGWLSKF- 223
           L  L+ L LS +   L       L   +   L     L  L L     ++ +   L+   
Sbjct: 112 LPTLQELHLSDNL--LGDAGLQLLCEGL---LDPQCRLEKLQLEYCSLSAASCEPLASVL 166

Query: 224 ---NHLEFLSLSSNGLQGT----ISSIGLENLTSIKTIDLSLNF---ELGGPIPTSFVRL 273
                 + L++S+N +       +     ++   ++ + L       +    +       
Sbjct: 167 RAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASK 226

Query: 274 CELTSIDVSDVKLSQDLSQVLDILSACGASALESLVFSSSQIS----GHLTSQLGQFKSL 329
             L  + +   KL       L       +S L +L      I+    G L   L   +SL
Sbjct: 227 ASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESL 286

Query: 330 RTLSLDDNCISGPLPPALGDL-----SSLTRLDLSRNML--NGSIPLS--LGKISHLEYL 380
           + LSL  N +       L +        L  L +             S  L +   L  L
Sbjct: 287 KELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLEL 346

Query: 381 DLSNNKMNGT----LSEIHFVNLTKLTWFSASGNSL----------ILQVNPNWVPPFQL 426
            +SNN++       L +      + L     +   +           L  N +      L
Sbjct: 347 QISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHS------L 400

Query: 427 KTLLLMSCHLGPQFPSWL-----HSQKNLSVLDISNARISD 462
           + L L +  LG      L          L  L + +   S+
Sbjct: 401 RELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSE 441

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 81.9 bits (203), Expect = 2e-16
 Identities = 84/494 (17%), Positives = 148/494 (29%), Gaps = 106/494 (21%)

Query: 200 TSLRHLDLSANKFNSTTAGWLSKFN-HLEFLSLSSNGLQGT----ISSIGLENLTSIKTI 254
             ++ LD+   + +      L       + + L   GL       ISS  L    ++  +
Sbjct: 3   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSA-LRVNPALAEL 61

Query: 255 DLSLNFELGGPIPTSFVRLCELTSIDVSDVKLSQDLSQVLDILSACGASALESLVFSSSQ 314
           +L  N                   +    V     + Q L       +  ++ L   +  
Sbjct: 62  NLRSN------------------ELGDVGVHC---VLQGL----QTPSCKIQKLSLQNCC 96

Query: 315 IS----GHLTSQLGQFKSLRTLSLDDNCISGPLPPALGDL-----SSLTRLDLSRNMLN- 364
           ++    G L+S L    +L+ L L DN +       L +        L +L L    L+ 
Sbjct: 97  LTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSA 156

Query: 365 ---GSIPLSLGKISHLEYLDLSNNKMNGT----LSEIHFVNLTKLTWFSASGNSL----- 412
                +   L      + L +SNN +N      L +    +  +L         +     
Sbjct: 157 ASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNC 216

Query: 413 -----ILQVNPNWVPPFQLKTLLLMSCHLGPQ-----FPSWLHSQKNLSVLDISNARISD 462
                I+    +      L+ L L S  LG        P  LH    L  L I    I+ 
Sbjct: 217 RDLCGIVASKAS------LRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITA 270

Query: 463 TIPRWFWNSIFQLSGIIPESFKNFSNLEVLNLGDNEF----VGKIPTWMGEGFTSLLILI 518
                       L        +   +L+ L+L  NE        +   + E    L  L 
Sbjct: 271 K-------GCGDLC----RVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLW 319

Query: 519 LRSNKF--DGFLPI--QLCRLTSLQILDVANNSLSGTMPGCVNNFSAMATIDSSHQSNAM 574
           ++S  F           L +   L  L ++NN L     G       +    S  +   +
Sbjct: 320 VKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDA--GVRELCQGLGQPGSVLRVLWL 377

Query: 575 SYFEVTAYDCEVLEDASIVMKGSMVEYNSILNLVRIIDVSKNNFSGEIPMEL-----TYL 629
           +  +V+   C  L         + +  N  L   R +D+S N       ++L        
Sbjct: 378 ADCDVSDSSCSSL--------AATLLANHSL---RELDLSNNCLGDAGILQLVESVRQPG 426

Query: 630 RGLQSLNLSHNIFT 643
             L+ L L    ++
Sbjct: 427 CLLEQLVLYDIYWS 440

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 64.2 bits (157), Expect = 8e-11
 Identities = 72/439 (16%), Positives = 134/439 (30%), Gaps = 110/439 (25%)

Query: 275 ELTSIDVSDVKLS-QDLSQVLDILSACGASALESLVFSSSQIS----GHLTSQLGQFKSL 329
           ++ S+D+   +LS    +++L +L  C     + +      ++      ++S L    +L
Sbjct: 4   DIQSLDIQCEELSDARWAELLPLLQQC-----QVVRLDDCGLTEARCKDISSALRVNPAL 58

Query: 330 RTLSLDDNCISGPLPPALGDL-----SSLTRLDLSRNMLN----GSIPLSLGKISHLEYL 380
             L+L  N +       +          + +L L    L     G +  +L  +  L+ L
Sbjct: 59  AELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQEL 118

Query: 381 DLSNNKMNGTLSEIHFVNLTKLTWFSASGNSLILQVNPNWVPPFQLKTLLLMSCHLGPQ- 439
            LS+N     L +     L +           +L           L+ L L  C L    
Sbjct: 119 HLSDNL----LGDAGLQLLCEG----------LLDPQCR------LEKLQLEYCSLSAAS 158

Query: 440 ---FPSWLHSQKNLSVLDISNARISDTIPRWFWNSIFQLSGIIPESFKNFSNLEVLNLGD 496
                S L ++ +   L +SN  I++         +  L   + +   +   LE L L  
Sbjct: 159 CEPLASVLRAKPDFKELTVSNNDINEA-------GVRVLCQGLKD---SPCQLEALKLES 208

Query: 497 NEFVGKIPTWMGEGFTSLLILILRSNKFDGFLPIQLCRLTSLQILDVANNSLSGTMPGCV 556
                             L  I+ S               SL+ L + +N L     G  
Sbjct: 209 CGV--------TSDNCRDLCGIVASK-------------ASLRELALGSNKLGDV--GMA 245

Query: 557 NNFSAMATIDSSHQSNAMSYFEVTAYDCEVLEDASIVMKGSMVEYNSILNLVRIIDVSKN 616
                +    S  ++  +    +TA  C  L          ++     L   + + ++ N
Sbjct: 246 ELCPGLLHPSSRLRTLWIWECGITAKGCGDL--------CRVLRAKESL---KELSLAGN 294

Query: 617 NFSGEIPMELTYLRGLQSLNLSHNIFTGQIPENIGNLISIESLDFSTNQLSSK----ISQ 672
               E    L     L                       +ESL   +   ++      S 
Sbjct: 295 ELGDEGARLLC--ETLLEPGCQ-----------------LESLWVKSCSFTAACCSHFSS 335

Query: 673 SMSSLSFLNHLNVSNNLLT 691
            ++   FL  L +SNN L 
Sbjct: 336 VLAQNRFLLELQISNNRLE 354

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 95.2 bits (237), Expect = 3e-21
 Identities = 61/317 (19%), Positives = 110/317 (34%), Gaps = 31/317 (9%)

Query: 105 LSGNVNPSLVDLKHLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGN 164
              + N + +          S        IP   G  + ++ L+LS      I    L  
Sbjct: 19  KEESSNQASLSCDRNGICKGSSGSLN--SIPS--GLTEAVKSLDLSNNRITYISNSDLQR 74

Query: 165 LSNLRCLDLSWSE-YALQVHSFSWLSGQIPNRLGNLTSLRHLDLSANKFNSTTAGWLSKF 223
             NL+ L L+ +    ++  SFS           +L SL HLDLS N  ++ ++ W    
Sbjct: 75  CVNLQALVLTSNGINTIEEDSFS-----------SLGSLEHLDLSYNYLSNLSSSWFKPL 123

Query: 224 NHLEFLSLSSNGLQGTISSIGLENLTSIKTIDLSLNFELGGPIPTSFVRLCELTSIDVSD 283
           + L FL+L  N  +    +    +LT ++ + +             F  L  L  +++  
Sbjct: 124 SSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDA 183

Query: 284 VKLSQDLSQVLDILSACGASALESLVFSSSQISGHLTSQLGQFKSLRTLSLDDNCISGP- 342
             L     + L  +       +  L+    Q    L   +    S+  L L D  +    
Sbjct: 184 SDLQSYEPKSLKSI-----QNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFH 238

Query: 343 ---LPP----ALGDLSSLTRLDLSRNMLNGSIPLSLGKISHLEYLDLSNNKMNGTLSEIH 395
              L      +L    +   + ++   L   +   L +IS L  L+ S N++  ++ +  
Sbjct: 239 FSELSTGETNSLIKKFTFRNVKITDESLF-QVMKLLNQISGLLELEFSRNQLK-SVPDGI 296

Query: 396 FVNLTKLTWFSASGNSL 412
           F  LT L       N  
Sbjct: 297 FDRLTSLQKIWLHTNPW 313

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 79.4 bits (196), Expect = 6e-16
 Identities = 57/266 (21%), Positives = 92/266 (34%), Gaps = 24/266 (9%)

Query: 303 SALESLVFSSSQISGHLTSQLGQFKSLRTLSLDDNCISGPLPPALGDLSSLTRLDLSRNM 362
            A++SL  S+++I+    S L +  +L+ L L  N I+     +   L SL  LDLS N 
Sbjct: 52  EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNY 111

Query: 363 LNGSIPLSL-GKISHLEYLDLSNNKMNGTLSEIHFVNLTKLTWFSASGNSLILQVNPNWV 421
           L  ++  S    +S L +L+L  N          F +LTKL            ++     
Sbjct: 112 L-SNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDF 170

Query: 422 PPF-QLKTLLLMSCHLGPQFPSWLHSQKNLSVLDISNARISDTIPRWF------------ 468
                L+ L + +  L    P  L S +N+S L +   +    +   F            
Sbjct: 171 AGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLEL 229

Query: 469 ------WNSIFQLSGIIPESFKNFSNLEVLNLGDNEFVGKIPTWMGEGFTSLLILILRSN 522
                      +LS     S         + + D      +        + LL L    N
Sbjct: 230 RDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLL--NQISGLLELEFSRN 287

Query: 523 KFDGFLPIQLCRLTSLQILDVANNSL 548
           +          RLTSLQ + +  N  
Sbjct: 288 QLKSVPDGIFDRLTSLQKIWLHTNPW 313

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 70.5 bits (173), Expect = 4e-13
 Identities = 62/350 (17%), Positives = 107/350 (30%), Gaps = 59/350 (16%)

Query: 340 SGPLPPALGDLSSLTRLDLSRNMLNGSIPLSLGKISHLEYLDLSNNKMNGTLSEIHFVNL 399
                 A            S   LN SIP  L     ++ LDLSNN++   +S       
Sbjct: 20  EESSNQASLSCDRNGICKGSSGSLN-SIPSGLT--EAVKSLDLSNNRIT-YISNSDLQRC 75

Query: 400 TKLTWFSASGNSLILQVNPNWVPPFQLKTLLLMSCHLGPQFPSWLHSQKNLSVLDISNAR 459
             L         L+L  N        + T+                S  +L  LD+S   
Sbjct: 76  VNLQA-------LVLTSN-------GINTIE----------EDSFSSLGSLEHLDLSY-- 109

Query: 460 ISDTIPRWFWNSIFQLSGIIPESFKNFSNLEVLNLGDNEFVGKIPTWMGEGFTSLLILIL 519
                     N    LS +    FK  S+L  LNL  N +     T +    T L IL +
Sbjct: 110 ----------N---YLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRV 156

Query: 520 RSNKFDGFLPIQ-LCRLTSLQILDVANNSLSGTMPGCVNNFSAMATIDSSHQSNAMSYFE 578
            +      +  +    LT L+ L++  + L    P  + +   ++ +             
Sbjct: 157 GNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHM--KQHILLL 214

Query: 579 VTAYDCEVLEDASIVMKGSMVEYNSILNLVRIIDVSKNNFSGEIPMELTYLRGLQSLNLS 638
                        I +  +       L    +     +  S      L      +++ ++
Sbjct: 215 ------------EIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKIT 262

Query: 639 HNIFTGQIPENIGNLISIESLDFSTNQLSSKISQSMSSLSFLNHLNVSNN 688
                 Q+ + +  +  +  L+FS NQL S        L+ L  + +  N
Sbjct: 263 DESLF-QVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTN 311

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 53.6 bits (129), Expect = 1e-07
 Identities = 33/240 (13%), Positives = 70/240 (29%), Gaps = 61/240 (25%)

Query: 474 QLSGIIPESFKNFSNLEVLNLGDNEFVGKIPTWMGEGFTSLLILILRSNK--------FD 525
           +++ I     +   NL+ L L  N  +  I         SL  L L  N         F 
Sbjct: 63  RITYISNSDLQRCVNLQALVLTSNG-INTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFK 121

Query: 526 GFLPIQLCRLTSLQILDVANNSLSGTMPGCVNNFSAMATIDSSHQSNAMSYFEVTAYDCE 585
                    L+SL  L++  N                                       
Sbjct: 122 P--------LSSLTFLNLLGNPYK------------------------------------ 137

Query: 586 VLEDASIVMKGSMVEYNSILNLVRIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQ 645
            L + S+    + ++   + N+     + + +F+G        L  L+ L +  +     
Sbjct: 138 TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAG--------LTFLEELEIDASDLQSY 189

Query: 646 IPENIGNLISIESLDFSTNQLSSKISQSMSSLSFLNHLNVSNNLLTGKIPSSTQLQSFDA 705
            P+++ ++ ++  L     Q    +   +   S +  L + +  L     S       ++
Sbjct: 190 EPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNS 249

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 42.4 bits (100), Expect = 4e-04
 Identities = 28/85 (32%), Positives = 40/85 (47%), Gaps = 2/85 (2%)

Query: 608 VRIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQIPENI-GNLISIESLDFSTNQL 666
           V+ +D+S N  +     +L     LQ+L L+ N     I E+   +L S+E LD S N L
Sbjct: 54  VKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGIN-TIEEDSFSSLGSLEHLDLSYNYL 112

Query: 667 SSKISQSMSSLSFLNHLNVSNNLLT 691
           S+  S     LS L  LN+  N   
Sbjct: 113 SNLSSSWFKPLSSLTFLNLLGNPYK 137

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 95.2 bits (237), Expect = 7e-21
 Identities = 52/295 (17%), Positives = 89/295 (30%), Gaps = 68/295 (23%)

Query: 118 HLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRCLDLSWSE 177
           +   L+L  N  Q I+       L++L  L LS      I       L+NL  L+L  + 
Sbjct: 65  NTRLLNLHENQIQIIK-VNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR 123

Query: 178 YALQVHSFSWLSGQIPNRLGNLTSLRHLDLSANKFNSTTAGWLSKFNHLEFLSLSSNGLQ 237
                     L+         L+ L+ L L  N   S  +   ++   L  L L      
Sbjct: 124 ----------LTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRL 173

Query: 238 GTISSIGLENLTSIKTIDLSLNFELGGPIPTSFVRLCELTSIDVSDVKLSQDLSQVLDIL 297
             IS    E L++++ ++L++                 L  I                  
Sbjct: 174 SYISEGAFEGLSNLRYLNLAMC---------------NLREIP----------------- 201

Query: 298 SACGASALESLVFSSSQISGHLTSQLGQFKSLRTLSLDDNCISGPLPPALGDLSSLTRLD 357
                  L  L+                   L  L L  N +S   P +   L  L +L 
Sbjct: 202 ------NLTPLI------------------KLDELDLSGNHLSAIRPGSFQGLMHLQKLW 237

Query: 358 LSRNMLNGSIPLSLGKISHLEYLDLSNNKMNGTLSEIHFVNLTKLTWFSASGNSL 412
           + ++ +      +   +  L  ++L++N +   L    F  L  L       N  
Sbjct: 238 MIQSQIQVIERNAFDNLQSLVEINLAHNNLT-LLPHDLFTPLHHLERIHLHHNPW 291

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 81.7 bits (202), Expect = 2e-16
 Identities = 47/242 (19%), Positives = 84/242 (34%), Gaps = 20/242 (8%)

Query: 326 FKSLRTLSLDDNCISGPLPPALGDLSSLTRLDLSRNMLNGSIPLSLGKISHLEYLDLSNN 385
             + R L+L +N I      +   L  L  L LSRN +      +   +++L  L+L +N
Sbjct: 63  STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN 122

Query: 386 KMNGTLSEIHFVNLTKLTWFSASGNSLILQVNPNWVPPFQLKTLLLMSC-HLGPQFPSWL 444
           ++  T+    FV L+KL       N +    +  +     L+ L L     L        
Sbjct: 123 RLT-TIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAF 181

Query: 445 HSQKNLSVLDISNARISDTIPRWFWNSIFQLSGIIPESFKNFSNLEVLNLGDNEFVGKIP 504
               NL  L+++   +   IP                +      L+ L+L  N     I 
Sbjct: 182 EGLSNLRYLNLAMCNLR-EIP----------------NLTPLIKLDELDLSGNHLS-AIR 223

Query: 505 TWMGEGFTSLLILILRSNKFDGFLPIQLCRLTSLQILDVANNSLSGTMPGCVNNFSAMAT 564
               +G   L  L +  ++           L SL  +++A+N+L+            +  
Sbjct: 224 PGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLER 283

Query: 565 ID 566
           I 
Sbjct: 284 IH 285

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 81.3 bits (201), Expect = 2e-16
 Identities = 53/217 (24%), Positives = 86/217 (39%), Gaps = 17/217 (7%)

Query: 200 TSLRHLDLSANKFNSTTAGWLSKFNHLEFLSLSSNGLQGTISSIGLENLTSIKTIDLSLN 259
           T+ R L+L  N+             HLE L LS N ++ TI       L ++ T++L  N
Sbjct: 64  TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR-TIEIGAFNGLANLNTLELFDN 122

Query: 260 FELGGPIPTSFVRLCELTSIDVSDVKLSQDLSQVLDILSACGASALESLVFSSS-QISGH 318
             L      +FV L +L  + + +  +    S   + +      +L  L      ++S  
Sbjct: 123 -RLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRI-----PSLRRLDLGELKRLSYI 176

Query: 319 LTSQLGQFKSLRTLSLDDNCISGPLPPALGDLSSLTRLDLSRNMLNGSIPLSLGKISHLE 378
                    +LR L+L    +     P L  L  L  LDLS N L+   P S   + HL+
Sbjct: 177 SEGAFEGLSNLRYLNLAMCNLRE--IPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQ 234

Query: 379 YLDLSNNKMNGTLSEIH---FVNLTKLTWFSASGNSL 412
            L +  ++    +  I    F NL  L   + + N+L
Sbjct: 235 KLWMIQSQ----IQVIERNAFDNLQSLVEINLAHNNL 267

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 77.5 bits (191), Expect = 4e-15
 Identities = 57/255 (22%), Positives = 91/255 (35%), Gaps = 47/255 (18%)

Query: 112 SLVDLKHLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRCL 171
           S   L+HL  L LS N  + I        L NL  L L       I       LS L+ L
Sbjct: 83  SFKHLRHLEILQLSRNHIRTIE-IGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKEL 141

Query: 172 DLSWSE-YALQVHSFSWLSGQIPNRLGNLTSLRHLDLS-ANKFNSTTAGWLSKFNHLEFL 229
            L  +   ++  ++F+            + SLR LDL    + +  + G     ++L +L
Sbjct: 142 WLRNNPIESIPSYAFN-----------RIPSLRRLDLGELKRLSYISEGAFEGLSNLRYL 190

Query: 230 SLSSNGLQGTISSIGLENLTSIKTIDLSLNFELGGPIPTSFVRLCELTSIDVSDVKLSQD 289
           +L+   L+  I +  L  L  +  +DLS N  L    P SF  L  L  + +   ++   
Sbjct: 191 NLAMCNLR-EIPN--LTPLIKLDELDLSGN-HLSAIRPGSFQGLMHLQKLWMIQSQIQV- 245

Query: 290 LSQVLDILSACGASALESLVFSSSQISGHLTSQLGQFKSLRTLSLDDNCISGPLPPALGD 349
                          +E   F +              +SL  ++L  N ++         
Sbjct: 246 ---------------IERNAFDN-------------LQSLVEINLAHNNLTLLPHDLFTP 277

Query: 350 LSSLTRLDLSRNMLN 364
           L  L R+ L  N  N
Sbjct: 278 LHHLERIHLHHNPWN 292

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 64.8 bits (158), Expect = 4e-11
 Identities = 50/218 (22%), Positives = 87/218 (39%), Gaps = 24/218 (11%)

Query: 474 QLSGIIPESFKNFSNLEVLNLGDNEFVGKIPTWMGEGFTSLLILILRSNKFDGFLPIQLC 533
           Q+  I   SFK+  +LE+L L  N  +  I      G  +L  L L  N+          
Sbjct: 75  QIQIIKVNSFKHLRHLEILQLSRNH-IRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFV 133

Query: 534 RLTSLQILDVANNSLSGTMPGCVNNFSAMATIDSSHQSNAMSYFEVTAYDCEVLEDASIV 593
            L+ L+ L + NN +        N   ++  +D       +SY    A++          
Sbjct: 134 YLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGE-LKRLSYISEGAFEG--------- 183

Query: 594 MKGSMVEYNSILNLVRIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQIPENIGNL 653
                      L+ +R ++++  N   EIP  LT L  L  L+LS N  +   P +   L
Sbjct: 184 -----------LSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGL 230

Query: 654 ISIESLDFSTNQLSSKISQSMSSLSFLNHLNVSNNLLT 691
           + ++ L    +Q+      +  +L  L  +N+++N LT
Sbjct: 231 MHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT 268

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 63.6 bits (155), Expect = 1e-10
 Identities = 56/342 (16%), Positives = 112/342 (32%), Gaps = 99/342 (28%)

Query: 351 SSLTRLDLSRNMLNGSIPLSLGKISHLEYLDLSNNKMNGTLSEIHFVNLTKLTWFSASGN 410
           +  +++   R  L   +P  +   ++   L+L  N++   +    F +L  L        
Sbjct: 43  NQFSKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQ-IIKVNSFKHLRHLEI------ 92

Query: 411 SLILQVNPNWVPPFQLKTLLLMSCHLGPQFPSWLHSQKNLSVLDISNARISDTIPRWFWN 470
            L L  N        ++T+               +   NL+ L++ +            N
Sbjct: 93  -LQLSRN-------HIRTIE----------IGAFNGLANLNTLELFD------------N 122

Query: 471 SIFQLSGIIPESFKNFSNLEVLNLGDNEFVGKIPTWMGEGFTSLLILIL-RSNKFDGFLP 529
              +L+ I   +F   S L+ L L +N     IP++      SL  L L    +      
Sbjct: 123 ---RLTTIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGELKRLSYISE 178

Query: 530 IQLCRLTSLQILDVANNSLSGTMPGCVNNFSAMATIDSSHQSNAMSYFEVTAYDCEVLED 589
                L++L+ L++A  +L       + N + +                        L++
Sbjct: 179 GAFEGLSNLRYLNLAMCNLRE-----IPNLTPLIK----------------------LDE 211

Query: 590 ASIVMKGSMVEYNSILNLV--RIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQIP 647
                          L+L    +  +   +F G        L  LQ L +  +     I 
Sbjct: 212 ---------------LDLSGNHLSAIRPGSFQG--------LMHLQKLWMIQSQIQ-VIE 247

Query: 648 EN-IGNLISIESLDFSTNQLSSKISQSMSSLSFLNHLNVSNN 688
            N   NL S+  ++ + N L+       + L  L  +++ +N
Sbjct: 248 RNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 49.4 bits (118), Expect = 3e-06
 Identities = 25/100 (25%), Positives = 39/100 (39%), Gaps = 11/100 (11%)

Query: 111 PSLVDLKHLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRC 170
           P+L  L  L  LDLSGN    IR P     L +L+ L +  ++   I  +   NL +L  
Sbjct: 201 PNLTPLIKLDELDLSGNHLSAIR-PGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVE 259

Query: 171 LDLSWSEYALQVHSFSWLSGQIPNRLGNLTSLRHLDLSAN 210
           ++L+       +           +    L  L  + L  N
Sbjct: 260 INLA----HNNLTLLP------HDLFTPLHHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 44.7 bits (106), Expect = 8e-05
 Identities = 23/91 (25%), Positives = 41/91 (45%), Gaps = 3/91 (3%)

Query: 609 RIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQIPENI-GNLISIESLDFSTNQLS 667
           R++++ +N           +LR L+ L LS N     I       L ++ +L+   N+L+
Sbjct: 67  RLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR-TIEIGAFNGLANLNTLELFDNRLT 125

Query: 668 SKISQSMSSLSFLNHLNVSNNLLTGKIPSST 698
           +  + +   LS L  L + NN +   IPS  
Sbjct: 126 TIPNGAFVYLSKLKELWLRNNPIE-SIPSYA 155

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 44.0 bits (104), Expect = 2e-04
 Identities = 39/225 (17%), Positives = 69/225 (30%), Gaps = 54/225 (24%)

Query: 480 PESFKNFSNLEVLNLGDNEFVGKIPTWMGEGFTSLLILILRSNKFDGFLPIQLCRLTSLQ 539
           P      +    +         ++P  +    T+  +L L  N+           L  L+
Sbjct: 36  PSVCSCSNQFSKVICVRKNLR-EVPDGI---STNTRLLNLHENQIQIIKVNSFKHLRHLE 91

Query: 540 ILDVANNSLSGTMPGCVNNFSAMATIDSSHQSNAMSYFEVTAYDCEVLEDASIVMKGSMV 599
           IL ++ N +     G  N  + + T++                                +
Sbjct: 92  ILQLSRNHIRTIEIGAFNGLANLNTLE--------------------------------L 119

Query: 600 EYNSILNLVRIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQIPENI-GNLISIES 658
             N      R+  +    F          L  L+ L L +N     IP      + S+  
Sbjct: 120 FDN------RLTTIPNGAFVY--------LSKLKELWLRNNPIE-SIPSYAFNRIPSLRR 164

Query: 659 LDFS-TNQLSSKISQSMSSLSFLNHLNVSNNLLTGKIPSSTQLQS 702
           LD     +LS     +   LS L +LN++   L  +IP+ T L  
Sbjct: 165 LDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIPNLTPLIK 208

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 93.2 bits (232), Expect = 1e-20
 Identities = 55/306 (17%), Positives = 91/306 (29%), Gaps = 63/306 (20%)

Query: 117 KHLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRCLDLSWS 176
              T LDL  ND   +R       L++L  L L   + + I       L  L+ L +S  
Sbjct: 54  PDTTLLDLQNNDISELR-KDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISK- 111

Query: 177 EYALQVHSFSWLSGQIPNRLGNL-----TSLRHLDLSANKFNSTTAGWLSKFNHLEFLSL 231
                            N L  +     +SL  L +  N+      G  S   ++  + +
Sbjct: 112 -----------------NHLVEIPPNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEM 154

Query: 232 SSNGLQGTISSIGLENLTSIKTIDLSLNFELGGPIPTSFVRLCELTSIDVSDVKLSQDLS 291
             N L+ +    G  +   +  + +S                 +LT I            
Sbjct: 155 GGNPLENSGFEPGAFDGLKLNYLRISEA---------------KLTGIPKD--------- 190

Query: 292 QVLDILSACGASALESLVFSSSQISGHLTSQLGQFKSLRTLSLDDNCISGPLPPALGDLS 351
                        L  L    ++I       L ++  L  L L  N I      +L  L 
Sbjct: 191 ---------LPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLP 241

Query: 352 SLTRLDLSRNMLNGSIPLSLGKISHLEYLDLSNNKM----NGTLSEIH-FVNLTKLTWFS 406
           +L  L L  N L+  +P  L  +  L+ + L  N +          +   V        S
Sbjct: 242 TLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGIS 300

Query: 407 ASGNSL 412
              N +
Sbjct: 301 LFNNPV 306

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 80.4 bits (199), Expect = 2e-16
 Identities = 38/264 (14%), Positives = 77/264 (29%), Gaps = 44/264 (16%)

Query: 112 SLVDLKHLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRCL 171
           +   L+ L  L +S N    I          +L  L +       +       L N+ C+
Sbjct: 97  AFSPLRKLQKLYISKNHLVEIP----PNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCI 152

Query: 172 DLSW---SEYALQVHSFSWLSGQI----PNRL-----GNLTSLRHLDLSANKFNSTTAGW 219
           ++          +  +F  L          +L         +L  L L  NK  +     
Sbjct: 153 EMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELED 212

Query: 220 LSKFNHLEFLSLSSNGLQGTISSIGLENLTSIKTIDLSLNFELGGPIPTSFVRLCELTSI 279
           L +++ L  L L  N ++  I +  L  L +++ + L  N +L   +P     L  L  +
Sbjct: 213 LLRYSKLYRLGLGHNQIR-MIENGSLSFLPTLRELHLDNN-KLSR-VPAGLPDLKLLQVV 269

Query: 280 DVSDVKLSQDLSQVLDILSACGASALESLVFSSSQISGHLTSQLGQFKSLRTLSLDDNCI 339
            +    +                + +    F                     +SL +N +
Sbjct: 270 YLHTNNI----------------TKVGVNDFCPVGFGVKRA-------YYNGISLFNNPV 306

Query: 340 S-GPLPP-ALGDLSSLTRLDLSRN 361
               + P     ++    +     
Sbjct: 307 PYWEVQPATFRCVTDRLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 76.6 bits (189), Expect = 4e-15
 Identities = 56/334 (16%), Positives = 99/334 (29%), Gaps = 69/334 (20%)

Query: 225 HLEFLSLSSNGLQGTISSIGLENLTSIKTIDLSLNF--ELGGPIPTSFVRLCELTSIDVS 282
           HL  +  S  GL+    ++  E       +DL  N   EL       F  L  L ++ + 
Sbjct: 34  HLRVVQCSDLGLK----AVPKEISPDTTLLDLQNNDISELR---KDDFKGLQHLYALVLV 86

Query: 283 DVKLSQDLSQVLDILSACGASALESLVFSSSQISGHLTSQLGQFKSLRTLSLDDNCISGP 342
           + K+S+   +            L+ L  S + +            SL  L + DN I   
Sbjct: 87  NNKISKIHEKAFS-----PLRKLQKLYISKNHLV---EIPPNLPSSLVELRIHDNRIRKV 138

Query: 343 LPPALGDLSSLTRLDLSRNML-NGSIPLSLGKISHLEYLDLSNNKMNGTLSEIHFVNLTK 401
                  L ++  +++  N L N            L YL +S  K    L+ I       
Sbjct: 139 PKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAK----LTGIPKDLPET 194

Query: 402 LTWFSASGNSLILQVNPNWVPPFQLKTLLLMSCHLGPQFPSWLHSQKNLSVLDISNARIS 461
           L       N +        +    L                       L  L + + +I 
Sbjct: 195 LNELHLDHNKI------QAIELEDLLRY------------------SKLYRLGLGHNQIR 230

Query: 462 DTIPRWFWNSIFQLSGIIPESFKNFSNLEVLNLGDNEFVGKIPTWMGEGFTSLLILILRS 521
                           I   S      L  L+L +N+   ++P  +      L ++ L +
Sbjct: 231 M---------------IENGSLSFLPTLRELHLDNNKLS-RVPAGL-PDLKLLQVVYLHT 273

Query: 522 NKF-----DGFLPIQ-LCRLTSLQILDVANNSLS 549
           N       + F P+    +      + + NN + 
Sbjct: 274 NNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVP 307

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 73.1 bits (180), Expect = 4e-14
 Identities = 54/317 (17%), Positives = 94/317 (29%), Gaps = 41/317 (12%)

Query: 326 FKSLRTLSLDDNCISGPLPPALGDLSSLTRLDLSRNMLNGSIPLSLGKISHLEYLDLSNN 385
                 L L +N IS         L  L  L L  N ++     +   +  L+ L +S N
Sbjct: 53  SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKN 112

Query: 386 KMNGTLSEIHFVNLTKLTWFSASGNSLILQVNPNWVPPF-QLKTLLLMSCHLGPQ-FPSW 443
                L EI     + L       N  I +V          +  + +    L    F   
Sbjct: 113 H----LVEIPPNLPSSLVELRIHDNR-IRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPG 167

Query: 444 LHSQKNLSVLDISNARISDTIPRWFWNSIFQLSGIIPESFKNFSNLEVLNLGDNEFVGKI 503
                 L+ L IS A+++  IP+                      L  L+L  N+    I
Sbjct: 168 AFDGLKLNYLRISEAKLT-GIPK-----------------DLPETLNELHLDHNKIQ-AI 208

Query: 504 PTWMGEGFTSLLILILRSNKFDGFLPIQLCRLTSLQILDVANNSLSGTMPGCVNNFSAMA 563
                  ++ L  L L  N+        L  L +L+ L + NN LS  +P  + +   + 
Sbjct: 209 ELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQ 267

Query: 564 TIDSSHQSNAMSYFEVTAYDCEVLEDASIVMKGSMVEYNSILNLVRIIDVSKNNFSGEIP 623
            +      N ++   V  +             G  +  N +       +V    F     
Sbjct: 268 VVYLHT--NNITKVGVNDFCPVGFGVKRAYYNGISLFNNPV----PYWEVQPATFRC--- 318

Query: 624 MELTYLRGLQSLNLSHN 640
                +    ++   + 
Sbjct: 319 -----VTDRLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 71.2 bits (175), Expect = 2e-13
 Identities = 64/374 (17%), Positives = 115/374 (30%), Gaps = 110/374 (29%)

Query: 328 SLRTLSLDDNCISGPLPPALGDLSSLTRLDLSRNMLNGSIPLSLGKISHLEYLDLSNNKM 387
            LR +   D  +   +P  +      T LDL  N ++         + HL  L L NNK 
Sbjct: 34  HLRVVQCSDLGLKA-VPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNK- 89

Query: 388 NGTLSEIH---FVNLTKLTWFSASGNSLILQVNPNWVPPFQLKTLLLMSCHLGPQFPSWL 444
              +S+IH   F  L KL     S N L+       +PP                     
Sbjct: 90  ---ISKIHEKAFSPLRKLQKLYISKNHLVE------IPPNLPS----------------- 123

Query: 445 HSQKNLSVLDISNARISDTIPRWFWNSIFQLSGIIPESFKNFSNLEVLNLGDNEF-VGKI 503
               +L  L I +            N I ++       F    N+  + +G N       
Sbjct: 124 ----SLVELRIHD------------NRIRKVP---KGVFSGLRNMNCIEMGGNPLENSGF 164

Query: 504 PTWMGEGFTSLLILILRSNKFDGFLPIQLCRLTSLQILDVANNSLSGTMPGCVNNFSAMA 563
                +G   L  L +   K  G +P  L    +L  L + +N +       +  +S + 
Sbjct: 165 EPGAFDG-LKLNYLRISEAKLTG-IPKDL--PETLNELHLDHNKIQAIELEDLLRYSKLY 220

Query: 564 TIDSSHQSNAMSYFEVTAYDCEVLEDASIVMKGSMVEYNSILNLVRIIDVSKNNFSGEIP 623
            +   H                                    N  +I  +   + S    
Sbjct: 221 RLGLGH------------------------------------N--QIRMIENGSLSF--- 239

Query: 624 MELTYLRGLQSLNLSHNIFTGQIPENIGNLISIESLDFSTNQLSS------KISQSMSSL 677
                L  L+ L+L +N  + ++P  + +L  ++ +   TN ++                
Sbjct: 240 -----LPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKR 293

Query: 678 SFLNHLNVSNNLLT 691
           ++ N +++ NN + 
Sbjct: 294 AYYNGISLFNNPVP 307

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 62.3 bits (152), Expect = 2e-10
 Identities = 50/224 (22%), Positives = 81/224 (36%), Gaps = 31/224 (13%)

Query: 474 QLSGIIPESFKNFSNLEVLNLGDNEFVGKIPTWMGEGFTSLLILILRSNKFDGFLPIQLC 533
            +S +  + FK   +L  L L +N+   KI          L  L +  N     +P  L 
Sbjct: 65  DISELRKDDFKGLQHLYALVLVNNKIS-KIHEKAFSPLRKLQKLYISKNHLVE-IPPNL- 121

Query: 534 RLTSLQILDVANNSLSGTMPGCVNNFSAMATIDSSHQSNAMSYFEVTAYDCEVLEDASIV 593
             +SL  L + +N +     G  +    M  I+        S FE  A+D          
Sbjct: 122 -PSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDG--------- 171

Query: 594 MKGSMVEYNSILNLVRIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQIPENI-GN 652
                      L L   + +S+   +  IP +L     L  L+L HN     I       
Sbjct: 172 -----------LKL-NYLRISEAKLT-GIPKDL--PETLNELHLDHNKIQ-AIELEDLLR 215

Query: 653 LISIESLDFSTNQLSSKISQSMSSLSFLNHLNVSNNLLTGKIPS 696
              +  L    NQ+    + S+S L  L  L++ NN L+ ++P+
Sbjct: 216 YSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPA 258

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 44.2 bits (105), Expect = 1e-04
 Identities = 20/111 (18%), Positives = 32/111 (28%), Gaps = 26/111 (23%)

Query: 112 SLVDLKHLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSG--------AEFAGIIPHQLG 163
           SL  L  L  L L  N     R+P  L  LK L+ + L           +F  +      
Sbjct: 236 SLSFLPTLRELHLDNNKLS--RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGF--GV 291

Query: 164 NLSNLRCLDLSW---SEYALQVHSFSWLSGQIPNRLGNLTSLRHLDLSANK 211
             +    + L       + +Q  +F             +T    +     K
Sbjct: 292 KRAYYNGISLFNNPVPYWEVQPATFR-----------CVTDRLAIQFGNYK 331

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 94.0 bits (234), Expect = 2e-20
 Identities = 54/270 (20%), Positives = 93/270 (34%), Gaps = 47/270 (17%)

Query: 118 HLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRCLDLSWSE 177
           +  +L+L  N+ Q I+       L +L  L L       I       L++L  L+L  + 
Sbjct: 76  NTRYLNLMENNIQMIQ-ADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW 134

Query: 178 -YALQVHSFSWLSGQIPNRLGNLTSLRHLDLSANKFNSTTAGWLSKFNHLEFLSLSSNGL 236
              +   +F             L+ LR L L  N   S  +   ++   L  L L     
Sbjct: 135 LTVIPSGAFE-----------YLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKK 183

Query: 237 QGTISSIGLENLTSIKTIDLSLNFELGGPIPTSFVRLCELTSIDVSDVKLSQDLSQVLDI 296
              IS    E L ++K ++L +                 +  +         +L+     
Sbjct: 184 LEYISEGAFEGLFNLKYLNLGMC---------------NIKDM--------PNLT----- 215

Query: 297 LSACGASALESLVFSSSQISGHLTSQLGQFKSLRTLSLDDNCISGPLPPALGDLSSLTRL 356
                   LE L  S +              SL+ L + ++ +S     A   L+SL  L
Sbjct: 216 ----PLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVEL 271

Query: 357 DLSRNMLNGSIPLS-LGKISHLEYLDLSNN 385
           +L+ N L+ S+P      + +L  L L +N
Sbjct: 272 NLAHNNLS-SLPHDLFTPLRYLVELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 82.1 bits (203), Expect = 1e-16
 Identities = 48/217 (22%), Positives = 83/217 (38%), Gaps = 17/217 (7%)

Query: 200 TSLRHLDLSANKFNSTTAGWLSKFNHLEFLSLSSNGLQGTISSIGLENLTSIKTIDLSLN 259
           ++ R+L+L  N      A      +HLE L L  N ++  I       L S+ T++L  N
Sbjct: 75  SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIR-QIEVGAFNGLASLNTLELFDN 133

Query: 260 FELGGPIPTSFVRLCELTSIDVSDVKLSQDLSQVLDILSACGASALESLVFSSS-QISGH 318
             L      +F  L +L  + + +  +    S   + +      +L  L      ++   
Sbjct: 134 -WLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRV-----PSLMRLDLGELKKLEYI 187

Query: 319 LTSQLGQFKSLRTLSLDDNCISGPLPPALGDLSSLTRLDLSRNMLNGSIPLSLGKISHLE 378
                    +L+ L+L    I     P L  L  L  L++S N      P S   +S L+
Sbjct: 188 SEGAFEGLFNLKYLNLGMCNIKD--MPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLK 245

Query: 379 YLDLSNNKMNGTLSEIH---FVNLTKLTWFSASGNSL 412
            L + N++    +S I    F  L  L   + + N+L
Sbjct: 246 KLWVMNSQ----VSLIERNAFDGLASLVELNLAHNNL 278

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 79.8 bits (197), Expect = 8e-16
 Identities = 51/246 (20%), Positives = 80/246 (32%), Gaps = 28/246 (11%)

Query: 326 FKSLRTLSLDDNCISGPLPPALGDLSSLTRLDLSRNMLNGSIPLSLGKISHLEYLDLSNN 385
             + R L+L +N I          L  L  L L RN +      +   ++ L  L+L +N
Sbjct: 74  PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDN 133

Query: 386 KMNGTLSEIH---FVNLTKLTWFSASGNSLILQVNPNWVPPF-QLKTLLLMSC-HLGPQF 440
                L+ I    F  L+KL       N  I  +          L  L L     L    
Sbjct: 134 W----LTVIPSGAFEYLSKLRELWLRNNP-IESIPSYAFNRVPSLMRLDLGELKKLEYIS 188

Query: 441 PSWLHSQKNLSVLDISNARISDTIPRWFWNSIFQLSGIIPESFKNFSNLEVLNLGDNEFV 500
                   NL  L++    I D +P                +      LE L +  N F 
Sbjct: 189 EGAFEGLFNLKYLNLGMCNIKD-MP----------------NLTPLVGLEELEMSGNHFP 231

Query: 501 GKIPTWMGEGFTSLLILILRSNKFDGFLPIQLCRLTSLQILDVANNSLSGTMPGCVNNFS 560
            +I      G +SL  L + +++           L SL  L++A+N+LS           
Sbjct: 232 -EIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLR 290

Query: 561 AMATID 566
            +  + 
Sbjct: 291 YLVELH 296

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 77.5 bits (191), Expect = 4e-15
 Identities = 54/255 (21%), Positives = 85/255 (33%), Gaps = 47/255 (18%)

Query: 112 SLVDLKHLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRCL 171
           +   L HL  L L  N  + I        L +L  L L       I       LS LR L
Sbjct: 94  TFRHLHHLEVLQLGRNSIRQIE-VGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLREL 152

Query: 172 DLSWSE-YALQVHSFSWLSGQIPNRLGNLTSLRHLDLS-ANKFNSTTAGWLSKFNHLEFL 229
            L  +   ++  ++F+            + SL  LDL    K    + G      +L++L
Sbjct: 153 WLRNNPIESIPSYAFN-----------RVPSLMRLDLGELKKLEYISEGAFEGLFNLKYL 201

Query: 230 SLSSNGLQGTISSIGLENLTSIKTIDLSLNFELGGPIPTSFVRLCELTSIDVSDVKLSQD 289
           +L    ++  + +  L  L  ++ +++S N       P SF  L  L  + V + ++S  
Sbjct: 202 NLGMCNIK-DMPN--LTPLVGLEELEMSGN-HFPEIRPGSFHGLSSLKKLWVMNSQVSL- 256

Query: 290 LSQVLDILSACGASALESLVFSSSQISGHLTSQLGQFKSLRTLSLDDNCISGPLPPALGD 349
                          +E   F                 SL  L+L  N +S         
Sbjct: 257 ---------------IERNAFDG-------------LASLVELNLAHNNLSSLPHDLFTP 288

Query: 350 LSSLTRLDLSRNMLN 364
           L  L  L L  N  N
Sbjct: 289 LRYLVELHLHHNPWN 303

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 65.5 bits (160), Expect = 3e-11
 Identities = 58/341 (17%), Positives = 114/341 (33%), Gaps = 97/341 (28%)

Query: 351 SSLTRLDLSRNMLNGSIPLSLGKISHLEYLDLSNNKMNGTLSEIHFVNLTKLTWFSASGN 410
           +  +++  +R  L+  +P  +   S+  YL+L  N +   +    F +L  L        
Sbjct: 54  NQFSKVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQ-MIQADTFRHLHHLEV------ 103

Query: 411 SLILQVNPNWVPPFQLKTLLLMSCHLGPQFPSWLHSQKNLSVLDISNARISDTIPRWFWN 470
            L L  N        ++ +               +   +L+ L++ +            N
Sbjct: 104 -LQLGRN-------SIRQIE----------VGAFNGLASLNTLELFD------------N 133

Query: 471 SIFQLSGIIPESFKNFSNLEVLNLGDNEFVGKIPTWMGEGFTSLLILIL-RSNKFDGFLP 529
               L+ I   +F+  S L  L L +N     IP++      SL+ L L    K +    
Sbjct: 134 ---WLTVIPSGAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYISE 189

Query: 530 IQLCRLTSLQILDVANNSLSGTMPGCVNNFSAMATIDSSHQSNAMSYFEVTAYDCEVLED 589
                L +L+ L++   ++       + N + +                           
Sbjct: 190 GAFEGLFNLKYLNLGMCNIKD-----MPNLTPLV-------------------------- 218

Query: 590 ASIVMKGSMVEYNSILNLVRIIDVSKNNFSGEIPME-LTYLRGLQSLNLSHNIFTGQIPE 648
                            L   +++S N+F  EI       L  L+ L + ++  +  I  
Sbjct: 219 ----------------GL-EELEMSGNHFP-EIRPGSFHGLSSLKKLWVMNSQVS-LIER 259

Query: 649 N-IGNLISIESLDFSTNQLSSKISQSMSSLSFLNHLNVSNN 688
           N    L S+  L+ + N LSS      + L +L  L++ +N
Sbjct: 260 NAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 64.4 bits (157), Expect = 6e-11
 Identities = 50/225 (22%), Positives = 89/225 (39%), Gaps = 25/225 (11%)

Query: 474 QLSGIIPESFKNFSNLEVLNLGDNEFVGKIPTWMGEGFTSLLILILRSNKFDGFLPIQLC 533
            +  I  ++F++  +LEVL LG N  + +I      G  SL  L L  N           
Sbjct: 86  NIQMIQADTFRHLHHLEVLQLGRNS-IRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFE 144

Query: 534 RLTSLQILDVANNSLSGTMPGCVNNFSAMATIDSSHQSNAMSYFEVTAYDCEVLEDASIV 593
            L+ L+ L + NN +        N   ++  +D       + Y    A++          
Sbjct: 145 YLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGE-LKKLEYISEGAFEG--------- 194

Query: 594 MKGSMVEYNSILNLVRIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQIPENIGNL 653
                      L  ++ +++   N   ++P  LT L GL+ L +S N F    P +   L
Sbjct: 195 -----------LFNLKYLNLGMCNIK-DMP-NLTPLVGLEELEMSGNHFPEIRPGSFHGL 241

Query: 654 ISIESLDFSTNQLSSKISQSMSSLSFLNHLNVSNNLLTGKIPSST 698
            S++ L    +Q+S     +   L+ L  LN+++N L+  +P   
Sbjct: 242 SSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLS-SLPHDL 285

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 51.7 bits (124), Expect = 6e-07
 Identities = 26/100 (26%), Positives = 42/100 (42%), Gaps = 11/100 (11%)

Query: 111 PSLVDLKHLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRC 170
           P+L  L  L  L++SGN F  IR P     L +L+ L +  ++ + I  +    L++L  
Sbjct: 212 PNLTPLVGLEELEMSGNHFPEIR-PGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVE 270

Query: 171 LDLSWSEYALQVHSFSWLSGQIPNRLGNLTSLRHLDLSAN 210
           L+L+       + S         +    L  L  L L  N
Sbjct: 271 LNLA----HNNLSSLP------HDLFTPLRYLVELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 42.4 bits (100), Expect = 4e-04
 Identities = 31/194 (15%), Positives = 56/194 (28%), Gaps = 50/194 (25%)

Query: 511 FTSLLILILRSNKFDGFLPIQLCRLTSLQILDVANNSLSGTMPGCVNNFSAMATIDSSHQ 570
            ++   L L  N            L  L++L +  NS+     G  N  +++ T++    
Sbjct: 74  PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLE---- 129

Query: 571 SNAMSYFEVTAYDCEVLEDASIVMKGSMVEYNSILNLVRIIDVSKNNFSGEIPMELTYLR 630
                                       +  N       +  +    F          L 
Sbjct: 130 ----------------------------LFDN------WLTVIPSGAFEY--------LS 147

Query: 631 GLQSLNLSHNIFTGQIPENI-GNLISIESLDFS-TNQLSSKISQSMSSLSFLNHLNVSNN 688
            L+ L L +N     IP      + S+  LD     +L      +   L  L +LN+   
Sbjct: 148 KLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMC 206

Query: 689 LLTGKIPSSTQLQS 702
            +   +P+ T L  
Sbjct: 207 NIK-DMPNLTPLVG 219

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 89.3 bits (222), Expect = 1e-19
 Identities = 49/216 (22%), Positives = 80/216 (37%), Gaps = 13/216 (6%)

Query: 200 TSLRHLDLSANKFNSTTAGWLSKFNHLEFLSLSSNGLQGTISSIGLENLTSIKTIDLSLN 259
            + + + L  N+ +   A       +L  L L SN L   I +     L  ++ +DLS N
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA-RIDAAAFTGLALLEQLDLSDN 90

Query: 260 FELGGPIPTSFVRLCELTSIDVSDVKLSQDLSQVLDILSACGASALESLVFSSSQISGHL 319
            +L    P +F  L  L ++ +    L +    +       G +AL+ L    + +    
Sbjct: 91  AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFR-----GLAALQYLYLQDNALQ--- 142

Query: 320 TSQLGQFK---SLRTLSLDDNCISGPLPPALGDLSSLTRLDLSRNMLNGSIPLSLGKISH 376
                 F+   +L  L L  N IS     A   L SL RL L +N +    P +   +  
Sbjct: 143 ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGR 202

Query: 377 LEYLDLSNNKMNGTLSEIHFVNLTKLTWFSASGNSL 412
           L  L L  N ++  L       L  L +   + N  
Sbjct: 203 LMTLYLFANNLS-ALPTEALAPLRALQYLRLNDNPW 237

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 83.9 bits (208), Expect = 7e-18
 Identities = 54/270 (20%), Positives = 82/270 (30%), Gaps = 71/270 (26%)

Query: 119 LTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRCLDLSWSEY 178
              + L GN    +       + +NL  L L     A I       L+ L  LDLS +  
Sbjct: 34  SQRIFLHGNRISHVP-AASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ 92

Query: 179 --ALQVHSFSWLSGQIPNRLGNLTSLRHLDLSANKFNSTTAGWLSKFNHLEFLSLSSNGL 236
             ++   +F             L  L  L L          G       L++L L  N L
Sbjct: 93  LRSVDPATFH-----------GLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNAL 141

Query: 237 QGTISSIGLENLTSIKTIDLSLNFELGGPIPTSFVRLCELTSIDVSDVKLSQDLSQVLDI 296
           Q  +      +L ++  + L  N                ++S+                 
Sbjct: 142 Q-ALPDDTFRDLGNLTHLFLHGN---------------RISSVP---------------- 169

Query: 297 LSACGASALESLVFSSSQISGHLTSQLGQFKSLRTLSLDDNCISGPLPPALGDLSSLTRL 356
                  A   L                   SL  L L  N ++   P A  DL  L  L
Sbjct: 170 -----ERAFRGLH------------------SLDRLLLHQNRVAHVHPHAFRDLGRLMTL 206

Query: 357 DLSRNMLNGSIPLS-LGKISHLEYLDLSNN 385
            L  N L+ ++P   L  +  L+YL L++N
Sbjct: 207 YLFANNLS-ALPTEALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 77.7 bits (192), Expect = 9e-16
 Identities = 46/224 (20%), Positives = 77/224 (34%), Gaps = 18/224 (8%)

Query: 326 FKSLRTLSLDDNCISGPLPPALGDLSSLTRLDLSRNMLNGSIPLSLGKISHLEYLDLSNN 385
             + + + L  N IS     +     +LT L L  N+L      +   ++ LE LDLS+N
Sbjct: 31  PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90

Query: 386 KMNGTLSEIHFVNLTKLTWFSASGNSLILQVNPNW-VPPFQLKTLLLMSCHLGPQFPSWL 444
               ++    F  L +L         L  ++ P        L+ L L    L        
Sbjct: 91  AQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQALPDDTF 149

Query: 445 HSQKNLSVLDISNARISDTIPRWFWNSIFQLSGIIPESFKNFSNLEVLNLGDNEFVGKIP 504
               NL+ L +              N   ++S +   +F+   +L+ L L  N     + 
Sbjct: 150 RDLGNLTHLFLHG------------N---RISSVPERAFRGLHSLDRLLLHQNRVA-HVH 193

Query: 505 TWMGEGFTSLLILILRSNKFDGFLPIQLCRLTSLQILDVANNSL 548
                    L+ L L +N         L  L +LQ L + +N  
Sbjct: 194 PHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPW 237

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 71.9 bits (177), Expect = 6e-14
 Identities = 49/255 (19%), Positives = 70/255 (27%), Gaps = 69/255 (27%)

Query: 112 SLVDLKHLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSG-AEFAGIIPHQLGNLSNLRC 170
           S    ++LT L L  N    I        L  L  L+LS  A+   + P     L  L  
Sbjct: 51  SFRACRNLTILWLHSNVLARID-AAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHT 109

Query: 171 LDLSWSEYALQVHSFSWLSGQIPNRLGNLTSLRHLDLSANKFNSTTAGWLSKFNHLEFLS 230
           L L        +          P     L +L++L L  N   +          +L  L 
Sbjct: 110 LHLDRC----GLQELG------PGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLF 159

Query: 231 LSSNGLQGTISSIGLENLTSIKTIDLSLNFELGGPIPTSFVRLCELTSIDVSDVKLSQDL 290
           L  N +  ++       L S+  + L  N                +  +           
Sbjct: 160 LHGNRIS-SVPERAFRGLHSLDRLLLHQN---------------RVAHVH---------- 193

Query: 291 SQVLDILSACGASALESLVFSSSQISGHLTSQLGQFKSLRTLSLDDNCISGPLPP-ALGD 349
                        A   L                    L TL L  N +S  LP  AL  
Sbjct: 194 -----------PHAFRDL------------------GRLMTLYLFANNLSA-LPTEALAP 223

Query: 350 LSSLTRLDLSRNMLN 364
           L +L  L L+ N   
Sbjct: 224 LRALQYLRLNDNPWV 238

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 55.0 bits (133), Expect = 2e-08
 Identities = 44/250 (17%), Positives = 76/250 (30%), Gaps = 57/250 (22%)

Query: 449 NLSVLDISNARISDTIPRWFWNSIF---------QLSGIIPESFKNFSNLEVLNLGDNEF 499
               + +   RIS      F               L+ I   +F   + LE L+L DN  
Sbjct: 33  ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ 92

Query: 500 VGKIPTWMGEGFTSLLILILRSNKFDGFLPIQLCRLTSLQILDVANNSLSGTMPGCVNNF 559
           +  +      G   L  L L         P     L +LQ L + +N+L         + 
Sbjct: 93  LRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDL 152

Query: 560 SAMATIDSSHQSNAMSYFEVTAYDCEVLEDASIVMKGSMVEYNSILNLVRIIDVSKNNFS 619
             +  +                                 +  N      RI  V +  F 
Sbjct: 153 GNLTHLF--------------------------------LHGN------RISSVPERAFR 174

Query: 620 GEIPMELTYLRGLQSLNLSHNIFTGQIPENI-GNLISIESLDFSTNQLSSKISQSMSSLS 678
           G        L  L  L L  N     +  +   +L  + +L    N LS+  +++++ L 
Sbjct: 175 G--------LHSLDRLLLHQNRVA-HVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLR 225

Query: 679 FLNHLNVSNN 688
            L +L +++N
Sbjct: 226 ALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 43.1 bits (102), Expect = 2e-04
 Identities = 37/216 (17%), Positives = 69/216 (31%), Gaps = 30/216 (13%)

Query: 479 IPESFKNFSNLEVLNLGDNEFVGKIPTWMGEGFTSLLILILRSNKFDGFLPIQLCRLTSL 538
           +P      +  + + L  N     +P        +L IL L SN            L  L
Sbjct: 26  VPVGI--PAASQRIFLHGNRI-SHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALL 82

Query: 539 QILDVANNS-LSGTMPGCVNNFSAMATIDSSHQSNAMSYFEVTAYDCEVLEDASIVMKGS 597
           + LD+++N+ L    P   +    + T+        +       +               
Sbjct: 83  EQLDLSDNAQLRSVDPATFHGLGRLHTLHLDR--CGLQELGPGLFRG------------- 127

Query: 598 MVEYNSILNLVRIIDVSKNNFSGEIPME-LTYLRGLQSLNLSHNIFTGQIPENI-GNLIS 655
                  L  ++ + +  N     +P +    L  L  L L  N  +  +PE     L S
Sbjct: 128 -------LAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRIS-SVPERAFRGLHS 178

Query: 656 IESLDFSTNQLSSKISQSMSSLSFLNHLNVSNNLLT 691
           ++ L    N+++     +   L  L  L +  N L+
Sbjct: 179 LDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLS 214

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 87.4 bits (217), Expect = 7e-19
 Identities = 58/308 (18%), Positives = 106/308 (34%), Gaps = 66/308 (21%)

Query: 113 LVDLKHLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRCLD 172
              L +   +    ++            L  +  L+  G     I    +  L+NL  L+
Sbjct: 15  DPALANAIKIAAGKSNVTDT---VTQADLDGITTLSAFGTGVTTIEG--VQYLNNLIGLE 69

Query: 173 LSWSEYALQVHSFSWLSGQIPNRLGNLTSLRHLDLSANKFNSTTAGWLSKFNHLEFLSLS 232
           L  +    Q+   +         L NLT +  L+LS N   + +A  ++    ++ L L+
Sbjct: 70  LKDN----QITDLA--------PLKNLTKITELELSGNPLKNVSA--IAGLQSIKTLDLT 115

Query: 233 SNGLQGTISSI-GLENLTSIKTIDLSLNFELGGPIPTSFVRLCELTSIDVSDVKLSQDLS 291
           S      I+ +  L  L++++ + L LN                                
Sbjct: 116 STQ----ITDVTPLAGLSNLQVLYLDLN-------------------------------- 139

Query: 292 QVLDILSACGASALESLVFSSSQISGHLTSQLGQFKSLRTLSLDDNCISGPLPPALGDLS 351
           Q+ +I    G + L+ L   ++Q+S    + L     L TL  DDN IS      L  L 
Sbjct: 140 QITNISPLAGLTNLQYLSIGNAQVSD--LTPLANLSKLTTLKADDNKISD--ISPLASLP 195

Query: 352 SLTRLDLSRNMLNGSIPLSLGKISHLEYLDLSNNKMNGTLSEIHFVNLTKLTWFSASGNS 411
           +L  + L  N ++   PL+    S+L  + L+N      ++         L   +     
Sbjct: 196 NLIEVHLKNNQISDVSPLA--NTSNLFIVTLTNQT----ITNQPVFYNNNLVVPNVVKGP 249

Query: 412 LILQVNPN 419
               + P 
Sbjct: 250 SGAPIAPA 257

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 70.5 bits (173), Expect = 2e-13
 Identities = 47/239 (19%), Positives = 96/239 (40%), Gaps = 35/239 (14%)

Query: 323 LGQFKSLRTLSLDDNCISGPLPPALGDLSSLTRLDLSRNMLNGSIPLSLGKISHLEYLDL 382
                +   ++   + ++  +     DL  +T L      +  +I   +  +++L  L+L
Sbjct: 15  DPALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVT-TIE-GVQYLNNLIGLEL 70

Query: 383 SNNKMNGTLSEI-HFVNLTKLTWFSASGNSLILQVNPNWVPPF----QLKTLLLMSCHLG 437
            +N+    ++++    NLTK+T    SGN L        V        +KTL L S  + 
Sbjct: 71  KDNQ----ITDLAPLKNLTKITELELSGNPL------KNVSAIAGLQSIKTLDLTSTQI- 119

Query: 438 PQFPSWLHSQKNLSVLDISNARISDTIP-------RWFWNSIFQLSGIIPESFKNFSNLE 490
               + L    NL VL +   +I++  P       ++      Q+S +      N S L 
Sbjct: 120 -TDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDL--TPLANLSKLT 176

Query: 491 VLNLGDNEFVGKIPTWMGEGFTSLLILILRSNKFDGFLPIQLCRLTSLQILDVANNSLS 549
            L   DN+ +  I         +L+ + L++N+     P+     ++L I+ + N +++
Sbjct: 177 TLKADDNK-ISDISPL--ASLPNLIEVHLKNNQISDVSPLA--NTSNLFIVTLTNQTIT 230

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 70.5 bits (173), Expect = 3e-13
 Identities = 54/306 (17%), Positives = 106/306 (34%), Gaps = 75/306 (24%)

Query: 220 LSKFNHLEFLSLSSNGLQGTISSIGLENLTSIKTIDLSLNF--ELGGPIPTSFVRLCELT 277
                +   ++   + +  T++     +L  I T+         + G        L  L 
Sbjct: 15  DPALANAIKIAAGKSNVTDTVT---QADLDGITTLSAFGTGVTTIEG-----VQYLNNLI 66

Query: 278 SIDVSDVKLSQDLSQVLDILSACGASALESLVFSSSQISGHLTSQLGQFKSLRTLSLDDN 337
            +++ D +++       D+      + +  L  S + +     S +   +S++TL L   
Sbjct: 67  GLELKDNQIT-------DLAPLKNLTKITELELSGNPLKN--VSAIAGLQSIKTLDLTST 117

Query: 338 CISGPLPPALGDLSSLTRLDLSRNMLNGSIPLSLGKISHLEYLDLSNNKMNGTLSEI-HF 396
            I+      L  LS+L  L L  N +    PL+   +++L+YL + N +    +S++   
Sbjct: 118 QITD--VTPLAGLSNLQVLYLDLNQITNISPLA--GLTNLQYLSIGNAQ----VSDLTPL 169

Query: 397 VNLTKLTWFSASGNSLILQVNPNWVPPFQLKTLLLMSCHLGPQFPSWLHSQKNLSVLDIS 456
            NL+KLT   A  N              ++  +            S L S  NL  + + 
Sbjct: 170 ANLSKLTTLKADDN--------------KISDI------------SPLASLPNLIEVHLK 203

Query: 457 NARISDTIPRWFWNSIFQLSGIIPESFKNFSNLEVLNLGDNEFVGKIPTWMGEGFTSLLI 516
           N +ISD                      N SNL ++ L +      I         +L++
Sbjct: 204 NNQISDV-----------------SPLANTSNLFIVTLTNQ----TITNQPVFYNNNLVV 242

Query: 517 LILRSN 522
             +   
Sbjct: 243 PNVVKG 248

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 61.2 bits (149), Expect = 3e-10
 Identities = 42/346 (12%), Positives = 101/346 (29%), Gaps = 107/346 (30%)

Query: 347 LGDLSSLTRLDLSRNMLNGSIPLSLGKISHLEYLDLSNNKMNGTLSEIHFVNLTKLTWFS 406
              L++  ++   ++ +  ++  +   +  +  L      +  T+  +    L  L    
Sbjct: 15  DPALANAIKIAAGKSNVTDTVTQA--DLDGITTLSAFGTGVT-TIEGVQ--YLNNLIGLE 69

Query: 407 ASGNSLILQVNPNWVPPFQLKTLLLMSCHLGPQFPSWLHSQKNLSVLDISNARISDTIPR 466
              N              Q+  L            + L +   ++ L++S   + +    
Sbjct: 70  LKDN--------------QITDL------------APLKNLTKITELELSGNPLKN---- 99

Query: 467 WFWNSIFQLSGIIPESFKNFSNLEVLNLGDNEFVGKIPTWMG-EGFTSLLILILRSNKFD 525
                          +     +++ L+L       +I       G ++L +L L  N+  
Sbjct: 100 -------------VSAIAGLQSIKTLDLTST----QITDVTPLAGLSNLQVLYLDLNQIT 142

Query: 526 GFLPIQLCRLTSLQILDVANNSLSGTMPGCVNNFSAMATIDSSHQSNAMSYFEVTAYDCE 585
              P  L  LT+LQ L + N  +S                                 D  
Sbjct: 143 NISP--LAGLTNLQYLSIGNAQVS---------------------------------DLT 167

Query: 586 VLEDASIVMKGSMVEYNSILNLVRIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQ 645
            L +               L+ +  +    N  S +I   L  L  L  ++L +N  +  
Sbjct: 168 PLAN---------------LSKLTTLKADDNKIS-DIS-PLASLPNLIEVHLKNNQISDV 210

Query: 646 IPENIGNLISIESLDFSTNQLSSKISQSMSSLSFLNHLNVSNNLLT 691
               + N  ++  +  +   ++++     ++L   N +   +    
Sbjct: 211 --SPLANTSNLFIVTLTNQTITNQPVFYNNNLVVPNVVKGPSGAPI 254

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 55.5 bits (134), Expect = 2e-08
 Identities = 32/149 (21%), Positives = 62/149 (41%), Gaps = 23/149 (15%)

Query: 111 PSLVDLKHLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRC 170
             L  L +L  L L  N    I     L  L NL+YL++  A+ + + P  L NLS L  
Sbjct: 123 TPLAGLSNLQVLYLDLN---QITNISPLAGLTNLQYLSIGNAQVSDLTP--LANLSKLTT 177

Query: 171 LDLSWSEYALQVHSFSWLSGQIPNRLGNLTSLRHLDLSANKFNSTTAGWLSKFNHLEFLS 230
           L    +    ++   S         L +L +L  + L  N+ +  +   L+  ++L  ++
Sbjct: 178 LKADDN----KISDIS--------PLASLPNLIEVHLKNNQISDVSP--LANTSNLFIVT 223

Query: 231 LSSNGLQGTISSIGLENLTSIKTIDLSLN 259
           L++     TI++  +    ++   ++   
Sbjct: 224 LTNQ----TITNQPVFYNNNLVVPNVVKG 248

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 53.5 bits (129), Expect = 8e-08
 Identities = 55/339 (16%), Positives = 111/339 (32%), Gaps = 74/339 (21%)

Query: 371 LGKISHLEYLDLSNNKMNGTLSEIHFVNLTKLTWFSASGNSL----ILQVNPNWVPPFQL 426
              +++   +    + +  T++     +L  +T  SA G  +     +Q   N      L
Sbjct: 15  DPALANAIKIAAGKSNVTDTVT---QADLDGITTLSAFGTGVTTIEGVQYLNN------L 65

Query: 427 KTLLLMSCHLGPQFPSWLHSQKNLSVLDISNARISDTIPRWFWNSIFQLSGIIPESFKNF 486
             L L    +     + L +   ++ L++S   + +                   +    
Sbjct: 66  IGLELKDNQI--TDLAPLKNLTKITELELSGNPLKN-----------------VSAIAGL 106

Query: 487 SNLEVLNLGDNEFVGKIPTWMG-EGFTSLLILILRSNKFDGFLPIQLCRLTSLQILDVAN 545
            +++ L+L       +I       G ++L +L L  N+     P  L  LT+LQ L + N
Sbjct: 107 QSIKTLDLTST----QITDVTPLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGN 160

Query: 546 NSLSGTMPGCVNNFSAMATIDSSHQSNAMSYFEVTAYDCEVLEDASIVMKGSMVEYNSIL 605
             +S   P  + N S + T+ +    N +S       D   L                 L
Sbjct: 161 AQVSDLTP--LANLSKLTTLKADD--NKIS-------DISPLAS---------------L 194

Query: 606 NLVRIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQIPENIGNLISIESLDFSTNQ 665
             +  + +  N  S   P  L     L  + L++   T Q      NL+         N 
Sbjct: 195 PNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITNQPVFYNNNLV-------VPNV 245

Query: 666 LSSKISQSMSSLSFLNHLNVSNNLLTGKIPSSTQLQSFD 704
           +       ++  +  ++   ++  LT  + S     S+ 
Sbjct: 246 VKGPSGAPIAPATISDNGTYASPNLTWNLTSFINNVSYT 284

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 45.1 bits (107), Expect = 5e-05
 Identities = 35/227 (15%), Positives = 69/227 (30%), Gaps = 43/227 (18%)

Query: 484 KNFSNLEVLNLGDNEFVGKIPTWMGEGFTSLLILILRSNKFDGFLPIQLCRLTSLQILDV 543
              +N   +  G +     +          +  L            +Q   L +L  L++
Sbjct: 16  PALANAIKIAAGKSNVTDTVTQ---ADLDGITTLSAFGTGVTTIEGVQ--YLNNLIGLEL 70

Query: 544 ANNSLSGTMPGCVNNFSAMATIDSSHQSNAMSYFEVTAYDCEVLEDASIVMKGSMVEYNS 603
            +N ++                D +   N     E+      +            V   +
Sbjct: 71  KDNQIT----------------DLAPLKNLTKITELELSGNPL----------KNVSAIA 104

Query: 604 ILNLVRIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQIP--ENIGNLISIESLDF 661
            L  ++ +D++    +   P  L  L  LQ L L  N    QI     +  L +++ L  
Sbjct: 105 GLQSIKTLDLTSTQITDVTP--LAGLSNLQVLYLDLN----QITNISPLAGLTNLQYLSI 158

Query: 662 STNQLSSKISQSMSSLSFLNHLNVSNNLLTG--KIPSSTQLQSFDAS 706
              Q+S      +++LS L  L   +N ++    + S   L      
Sbjct: 159 GNAQVSD--LTPLANLSKLTTLKADDNKISDISPLASLPNLIEVHLK 203

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 89.8 bits (222), Expect = 9e-19
 Identities = 55/291 (18%), Positives = 99/291 (34%), Gaps = 40/291 (13%)

Query: 113 LVDLKHLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRCLD 172
                     +L                L ++  +  + ++   +    +  L N+  L 
Sbjct: 17  DDAFAETIKDNLKKKSVTDA---VTQNELNSIDQIIANNSDIKSVQG--IQYLPNVTKLF 71

Query: 173 LSWSEYALQVHSFSWLSGQIPNRLGNLTSLRHLDLSANKFNSTTAGWLSKFNHLEFLSLS 232
           L+ +    ++             L NL +L  L L  NK    ++  L     L+ LSL 
Sbjct: 72  LNGN----KLTDIK--------PLTNLKNLGWLFLDENKIKDLSS--LKDLKKLKSLSLE 117

Query: 233 SNGLQGTISSI-GLENLTSIKTIDLSLNFELGGPI--PTSFVRLCELTSIDVSDVKLSQD 289
            NG    IS I GL +L  ++++ L  N      I   T   RL +L ++ + D ++S  
Sbjct: 118 HNG----ISDINGLVHLPQLESLYLGNN-----KITDITVLSRLTKLDTLSLEDNQIS-- 166

Query: 290 LSQVLDILSACGASALESLVFSSSQISGHLTSQLGQFKSLRTLSLDDNCISGPLPPALGD 349
                DI+   G + L++L  S + IS      L   K+L  L L              +
Sbjct: 167 -----DIVPLAGLTKLQNLYLSKNHISD--LRALAGLKNLDVLELFSQECLNKPINHQSN 219

Query: 350 LSSLTRLDLSRNMLNGSIPLSLGKISHLEYLDLSNNKMNGTLSEIHFVNLT 400
           L     +  +   L     +S         +     +    +S I +  +T
Sbjct: 220 LVVPNTVKNTDGSLVTPEIISDDGDYEKPNVKWHLPEFTNEVSFIFYQPVT 270

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 87.1 bits (215), Expect = 7e-18
 Identities = 53/297 (17%), Positives = 90/297 (30%), Gaps = 84/297 (28%)

Query: 111 PSLVDLKHLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRC 170
            +  +L  +  +  + +D + +   + +  L N+  L L+G +   I P  L NL NL  
Sbjct: 37  VTQNELNSIDQIIANNSDIKSV---QGIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGW 91

Query: 171 LDLSWSEYALQVHSFSWLSGQIPNRLGNLTSLRHLDLSANKFNSTTAGWLSKFNHLEFLS 230
           L L  +    ++   S         L +L  L+ L L  N  +      L     LE L 
Sbjct: 92  LFLDEN----KIKDLS--------SLKDLKKLKSLSLEHNGISDING--LVHLPQLESLY 137

Query: 231 LSSNGLQGTISSI-GLENLTSIKTIDLSLNFELGGPIPTSFVRLCELTSIDVSDVKLSQD 289
           L +N     I+ I  L  LT + T+ L  N               +++ I          
Sbjct: 138 LGNNK----ITDITVLSRLTKLDTLSLEDN---------------QISDI---------- 168

Query: 290 LSQVLDILSACGASALESLVFSSSQISGHLTSQLGQFKSLRTLSLDDNCISGPLPPALGD 349
                                            L     L+ L L  N IS     AL  
Sbjct: 169 -------------------------------VPLAGLTKLQNLYLSKNHISD--LRALAG 195

Query: 350 LSSLTRLDLSRNMLNGSIPLSLGKISHLEYLDLSNNKMN--GTLSEIHFVNLTKLTW 404
           L +L  L+L               +     +  ++  +     +S+        + W
Sbjct: 196 LKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPNVKW 252

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 79.8 bits (196), Expect = 1e-15
 Identities = 66/391 (16%), Positives = 102/391 (26%), Gaps = 120/391 (30%)

Query: 196 LGNLTSLRHLDLSANKFNSTTAGWLSKFNHLEFLSLSSNGLQGTISSI-GLENLTSIKTI 254
                     +L             ++ N ++ +  +++     I S+ G++ L ++  +
Sbjct: 17  DDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSD----IKSVQGIQYLPNVTKL 70

Query: 255 DLSLNFELGGPIPTSFVRLCELTSIDVSDVKLSQDLSQVLDILSACGASALESLVFSSSQ 314
            L+ N               +LT I                                   
Sbjct: 71  FLNGN---------------KLTDI----------------------------------- 80

Query: 315 ISGHLTSQLGQFKSLRTLSLDDNCISGPLPPALGDLSSLTRLDLSRNMLNGSIPLSLGKI 374
                   L   K+L  L LD+N I   L   L DL  L  L L  N ++  I   L  +
Sbjct: 81  ------KPLTNLKNLGWLFLDENKIKD-LSS-LKDLKKLKSLSLEHNGIS-DIN-GLVHL 130

Query: 375 SHLEYLDLSNNKMNGTLSEIH-FVNLTKLTWFSASGNSLILQVNPNWVPPFQLKTLLLMS 433
             LE L L NNK    +++I     LTKL   S   N              Q+  +    
Sbjct: 131 PQLESLYLGNNK----ITDITVLSRLTKLDTLSLEDN--------------QISDI---- 168

Query: 434 CHLGPQFPSWLHSQKNLSVLDISNARISDTIPRWFWNSIFQLSGIIPESFKNFSNLEVLN 493
                     L     L  L +S   ISD                   +     NL+VL 
Sbjct: 169 --------VPLAGLTKLQNLYLSKNHISDL-----------------RALAGLKNLDVLE 203

Query: 494 LGDNEFVGKIPTWMGEGFTSLLILILRSNKFDGFLPIQ----LCRLTSLQILDVANNSLS 549
           L   E + K              +            I       +      L    N +S
Sbjct: 204 LFSQECLNKPINHQ-SNLVVPNTVKNTDGSLVTPEIISDDGDYEKPNVKWHLPEFTNEVS 262

Query: 550 GTMPGCVNNFSAMATIDSSHQSNAMSYFEVT 580
                 V    A A             + V+
Sbjct: 263 FIFYQPVTIGKAKARFHGRVTQPLKEVYTVS 293

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 75.5 bits (185), Expect = 3e-14
 Identities = 49/247 (19%), Positives = 84/247 (34%), Gaps = 61/247 (24%)

Query: 305 LESLVFSSSQISGHLTSQLGQFKSLRTLSLDDNCISGPLPPALGDLSSLTRLDLSRNMLN 364
           +   +  S+ I          F      +L    ++  +     +L+S+ ++  + + + 
Sbjct: 1   MGETITVSTPIKQ--IFPDDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK 56

Query: 365 GSIPLSLGKISHLEYLDLSNNKMNGTLSEI-HFVNLTKLTWFSASGNSLILQVNPNWVPP 423
            S+   +  + ++  L L+ NK    L++I    NL  L W     N  I  ++      
Sbjct: 57  -SVQ-GIQYLPNVTKLFLNGNK----LTDIKPLTNLKNLGWLFLDENK-IKDLSS----- 104

Query: 424 FQLKTLLLMSCHLGPQFPSWLHSQKNLSVLDISNARISDTIPRWFWNSIFQLSGIIPESF 483
             LK L                  K L  L + +  ISD                     
Sbjct: 105 --LKDL------------------KKLKSLSLEHNGISDI-----------------NGL 127

Query: 484 KNFSNLEVLNLGDNEFVGKIPTWMG-EGFTSLLILILRSNKFDGFLPIQLCRLTSLQILD 542
            +   LE L LG+N    KI         T L  L L  N+    +P+    LT LQ L 
Sbjct: 128 VHLPQLESLYLGNN----KITDITVLSRLTKLDTLSLEDNQISDIVPLA--GLTKLQNLY 181

Query: 543 VANNSLS 549
           ++ N +S
Sbjct: 182 LSKNHIS 188

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 69.0 bits (168), Expect = 3e-12
 Identities = 56/372 (15%), Positives = 109/372 (29%), Gaps = 109/372 (29%)

Query: 329 LRTLSLDDNCISGPLPPALGDLSSLTRLDLSRNMLNGSIPLSLGKISHLEYLDLSNNKMN 388
           +         I    P      +   + +L +  +  ++  +  +++ ++ +  +N+   
Sbjct: 1   MGETITVSTPIKQIFP--DDAFAETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSD-- 54

Query: 389 GTLSEIHFV-NLTKLTWFSASGNSLILQVNPNWVPPFQLKTLLLMSCHLGPQFPSWLHSQ 447
             +  +  +  L  +T    +GN              +L  +              L + 
Sbjct: 55  --IKSVQGIQYLPNVTKLFLNGN--------------KLTDI------------KPLTNL 86

Query: 448 KNLSVLDISNARISDTIPRWFWNSIFQLSGIIPESFKNFSNLEVLNLGDNEFVGKIPTWM 507
           KNL  L +   +I D                   S K+   L+ L+L  N  +  I    
Sbjct: 87  KNLGWLFLDENKIKDL-----------------SSLKDLKKLKSLSLEHNG-ISDING-- 126

Query: 508 GEGFTSLLILILRSNKFDGFLPIQLCRLTSLQILDVANNSLSGTMPGCVNNFSAMATIDS 567
                 L  L L +NK        L RLT L  L + +N +S                  
Sbjct: 127 LVHLPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQIS------------------ 166

Query: 568 SHQSNAMSYFEVTAYDCEVLEDASIVMKGSMVEYNSILNLVRIIDVSKNNFSGEIPMELT 627
                          D   L                 L  ++ + +SKN+ S ++   L 
Sbjct: 167 ---------------DIVPLAG---------------LTKLQNLYLSKNHIS-DLR-ALA 194

Query: 628 YLRGLQSLNLSHNIFTGQIPENIGNLISIESLDFSTNQLSSKISQSMSSLSFLNHLNVSN 687
            L+ L  L L       +   +  NL+   ++  +   L +   + +S        NV  
Sbjct: 195 GLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTP--EIISDDGDYEKPNVKW 252

Query: 688 NLLTGKIPSSTQ 699
           +L       S  
Sbjct: 253 HLPEFTNEVSFI 264

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 51.3 bits (122), Expect = 9e-07
 Identities = 43/239 (17%), Positives = 83/239 (34%), Gaps = 66/239 (27%)

Query: 470 NSIFQLSGIIPESFKNFSNLEVLNLGDNEFVGKIPTWMGEGFTSLLILILRSNKFDGFLP 529
             I Q+          F+     NL     V    T       S+  +I  ++       
Sbjct: 9   TPIKQIFPD-----DAFAETIKDNLKKKS-VTDAVTQ--NELNSIDQIIANNSDIKSVQG 60

Query: 530 IQLCRLTSLQILDVANNSLSGTMPGCVNNFSAMATIDSSHQSNAMSYFEVTAYDCEVLED 589
           IQ   L ++  L +  N L+                                 D + L +
Sbjct: 61  IQ--YLPNVTKLFLNGNKLT---------------------------------DIKPLTN 85

Query: 590 ASIVMKGSMVEYNSILNLVRIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQIPEN 649
                          L  +  + + +N    ++   L  L+ L+SL+L HN  +  I   
Sbjct: 86  ---------------LKNLGWLFLDENKIK-DLSS-LKDLKKLKSLSLEHNGIS-DI-NG 126

Query: 650 IGNLISIESLDFSTNQLSSKISQSMSSLSFLNHLNVSNNLLT--GKIPSSTQLQSFDAS 706
           + +L  +ESL    N++ + I+  +S L+ L+ L++ +N ++    +   T+LQ+   S
Sbjct: 127 LVHLPQLESLYLGNNKI-TDIT-VLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLS 183

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 84.6 bits (209), Expect = 3e-17
 Identities = 50/277 (18%), Positives = 92/277 (33%), Gaps = 50/277 (18%)

Query: 279 IDVSDVKLSQDLSQVLDILSACGASALESLVFSSSQISGHLTS-QLGQFKSLRTLSLDDN 337
             +S       +S       +      E         +  ++  +         L L+  
Sbjct: 11  FSLSQNSFYNTISGTYADYFSA-WDKWEKQALPGENRNEAVSLLKECLINQFSELQLNRL 69

Query: 338 CISGPLPPALGDLSSLTRLDLSRNMLNGSIPLSLGKISHLEYLDLSNNKMNGTLSEIHFV 397
            +S  LP  L     +T L++++N L  S+P        LEYLD  +N+++ TL E    
Sbjct: 70  NLSS-LPDNLP--PQITVLEITQNAL-ISLPELPA---SLEYLDACDNRLS-TLPE-LPA 120

Query: 398 NLTKLTWFSASGNSLILQVNPNWVPPF--QLKTLLLMSCHLGPQFPSWLHSQKNLSVLDI 455
           +L  L       N L        +P     L+ +   +  L    P       +L VL +
Sbjct: 121 SLKHL---DVDNNQLT------MLPELPALLEYINADNNQLT-MLPELP---TSLEVLSV 167

Query: 456 SNARISDTIPRWFWNSIFQLSGIIPESFKNFSNLEVLNLGDNEFVGKIPTWMGEGF---T 512
            N +++                 +PE      +LE L++  N     +P           
Sbjct: 168 RNNQLTF----------------LPELP---ESLEALDVSTNLLES-LPAVPVRNHHSEE 207

Query: 513 SLLILILRSNKFDGFLPIQLCRLTSLQILDVANNSLS 549
           + +    R N+    +P  +  L     + + +N LS
Sbjct: 208 TEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLS 243

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 79.6 bits (196), Expect = 1e-15
 Identities = 50/389 (12%), Positives = 113/389 (29%), Gaps = 77/389 (19%)

Query: 116 LKHLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRCLDLSW 175
           +   + L L+  +     +P  L     +  L ++       +P    +L  L   D   
Sbjct: 58  INQFSELQLNRLNLS--SLPDNLP--PQITVLEITQNAL-ISLPELPASLEYLDACDNRL 112

Query: 176 SEYALQVHSFSWLSGQIPNRLGNLTSLRHLDLSANKFNSTTAGWLSKFNHLEFLSLSSNG 235
           S               +P    +L   +HLD+  N+              LE+++  +N 
Sbjct: 113 ST--------------LPELPASL---KHLDVDNNQLTMLP----ELPALLEYINADNNQ 151

Query: 236 LQGTISSIGLENLTSIKTIDLSLNFELGGPIPTSFVRLCELTSIDVSDVKLSQDLSQVLD 295
           L                             +P        L  + V + +L+  L ++  
Sbjct: 152 LTM---------------------------LPEL---PTSLEVLSVRNNQLTF-LPELP- 179

Query: 296 ILSACGASALESLVFSSSQISGHLTSQLGQFKSLRT----LSLDDNCISGPLPPALGDLS 351
                   +LE+L  S++ +   L +   +              +N I+  +P  +  L 
Sbjct: 180 -------ESLEALDVSTNLLE-SLPAVPVRNHHSEETEIFFRCRENRITH-IPENILSLD 230

Query: 352 SLTRLDLSRNMLNGSIPLSLGKISHLEYLDLSNNKMNGTLSEIHFVNLT----KLTWFSA 407
               + L  N L+  I  SL + +            + +  + + ++         WF  
Sbjct: 231 PTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRPLADAVTAWFPE 290

Query: 408 SGNSLILQVNPNWVPPFQLKTLLLMSCHLG--PQFPSWLHSQKNLSVLDISNARISDTIP 465
           +  S + Q+   +       T       L       +    ++ ++      +  ++   
Sbjct: 291 NKQSDVSQIWHAFEHEEHANTFSAFLDRLSDTVSARNTSGFREQVAAWLEKLSASAELRQ 350

Query: 466 RWFWNSIFQLSGIIPESFKNFSNLEVLNL 494
           + F  +              ++NL    L
Sbjct: 351 QSFAVAADATESCEDRVALTWNNLRKTLL 379

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 77.7 bits (191), Expect = 5e-15
 Identities = 58/312 (18%), Positives = 88/312 (28%), Gaps = 62/312 (19%)

Query: 225 HLEFLSLSSNGLQGTISSIG------LENLTSIKTIDLSLNFELGGPIPTSFVRLCELTS 278
                SLS N    TIS          +          + N  +         +  EL  
Sbjct: 7   INNNFSLSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSEL-- 64

Query: 279 IDVSDVKLSQDLSQVLDILSACGASALESLVFSSSQISGHLTSQLGQFKSLRTLSLDDNC 338
             ++ + LS         L       +  L  + + +   L         L  L   DN 
Sbjct: 65  -QLNRLNLSS--------LPDNLPPQITVLEITQNALI-SLPELPAS---LEYLDACDNR 111

Query: 339 ISGPLPPALGDLSSLTRLDLSRNMLNGSIPLSLGKISHLEYLDLSNNKMNGTLSEIHFVN 398
           +S  LP       SL  LD+  N L   +P        LEY++  NN++   L E     
Sbjct: 112 LST-LPELPA---SLKHLDVDNNQLT-MLPELPAL---LEYINADNNQLT-MLPE----L 158

Query: 399 LTKLTWFSASGNSLILQVNPNWVP--PFQLKTLLLMSCHLG---PQFPSWLHSQKNLSVL 453
            T L   S   N L       ++P  P  L+ L + +  L           HS++     
Sbjct: 159 PTSLEVLSVRNNQL------TFLPELPESLEALDVSTNLLESLPAVPVRNHHSEETEIFF 212

Query: 454 DISNARISDTIPRWFWNSIFQLSGIIPESFKNFSNLEVLNLGDNEFVGKIPTWMGEGFTS 513
                RI+                 IPE+  +      + L DN              T+
Sbjct: 213 RCRENRITH----------------IPENILSLDPTCTIILEDNPLS-SRIRESLSQQTA 255

Query: 514 LLILILRSNKFD 525
                     F 
Sbjct: 256 QPDYHGPRIYFS 267

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 73.9 bits (181), Expect = 8e-14
 Identities = 64/364 (17%), Positives = 114/364 (31%), Gaps = 110/364 (30%)

Query: 311 SSSQISGHLTSQLGQFKSLRTLSLDDNCISGPLPPALGDLSSLTRLDLSRNMLNGSIPLS 370
           + S       S   +++       + N     L   L  ++  + L L+R  L+ S+P +
Sbjct: 21  TISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECL--INQFSELQLNRLNLS-SLPDN 77

Query: 371 LGKISHLEYLDLSNNKMNGTLSEIHFVNLTKLTWFSASGNSLILQVNPNWVPPFQLKTLL 430
           L     +  L+++ N     L  +       L +  A  N              +L TL 
Sbjct: 78  LPP--QITVLEITQNA----LISLP-ELPASLEYLDACDN--------------RLSTL- 115

Query: 431 LMSCHLGPQFPSWLHSQKNLSVLDISNARISDTIPRWFWNSIFQLSGIIPESFKNFSNLE 490
                  P+ P+      +L  LD+ N +++                 +PE     + LE
Sbjct: 116 -------PELPA------SLKHLDVDNNQLTM----------------LPELP---ALLE 143

Query: 491 VLNLGDNEFVGKIPTWMGEGFTSLLILILRSNKFDGFLPIQLCRLTSLQILDVANNSLSG 550
            +N  +N+    +P       TSL +L +R+N+   FLP       SL+ LDV+ N L  
Sbjct: 144 YINADNNQLT-MLPELP----TSLEVLSVRNNQL-TFLPELP---ESLEALDVSTNLLE- 193

Query: 551 TMPGCVNNFSAMATIDSSHQSNAMSYFEVTAYDCEVLEDASIVMKGSMVEYNSILNLVRI 610
           ++P                                    A  V      E          
Sbjct: 194 SLP------------------------------------AVPVRNHHSEETEIFFRC--- 214

Query: 611 IDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQIPENIGNLISIESLDFSTNQLSSKI 670
               +N  +  IP  +  L    ++ L  N  + +I E++    +           S   
Sbjct: 215 ---RENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSD 270

Query: 671 SQSM 674
            Q  
Sbjct: 271 GQQN 274

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 71.2 bits (174), Expect = 5e-13
 Identities = 54/330 (16%), Positives = 97/330 (29%), Gaps = 65/330 (19%)

Query: 158 IPHQLGNLSNLRCLDLSWSEYALQVHSFSWLSGQIPNRLGNLTSLRHLDLSANKFNSTTA 217
           I   + N  +L              ++ S       +             + N   + + 
Sbjct: 3   IMLPINNNFSLSQNSFY--------NTISGTYADYFSAWDKWEKQALPGENRN--EAVSL 52

Query: 218 GWLSKFNHLEFLSLSSNGLQGTISSIGLENLTSIKTIDLSLNFELGGPIPTSFVRLCELT 277
                 N    L L+   L     ++       I  ++++ N  L   +P        L 
Sbjct: 53  LKECLINQFSELQLNRLNLSSLPDNLP----PQITVLEITQN-AL-ISLPEL---PASLE 103

Query: 278 SIDVSDVKLSQ-----------DLSQV-LDILSACGASALESLVFSSSQISGHLTSQLGQ 325
            +D  D +LS            D+    L +L    A  LE +   ++Q++  L      
Sbjct: 104 YLDACDNRLSTLPELPASLKHLDVDNNQLTMLPELPAL-LEYINADNNQLT-MLPELPT- 160

Query: 326 FKSLRTLSLDDNCISGPLPPALGDLSSLTRLDLSRNMLNGSIPLSLGKISHLE----YLD 381
             SL  LS+ +N ++  LP       SL  LD+S N+L  S+P    +  H E    +  
Sbjct: 161 --SLEVLSVRNNQLTF-LPELPE---SLEALDVSTNLLE-SLPAVPVRNHHSEETEIFFR 213

Query: 382 LSNNKMNGTLSEI--HFVNLTKLTWFSASGN--------------SLILQVNPNWVPPFQ 425
              N+    ++ I  + ++L          N              +      P       
Sbjct: 214 CRENR----ITHIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMS 269

Query: 426 LKTLLLMSCHLGPQFPSWLHSQKNLSVLDI 455
                 +   L     +W    K   V  I
Sbjct: 270 DGQQNTLHRPLADAVTAWFPENKQSDVSQI 299

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 63.8 bits (155), Expect = 1e-10
 Identities = 59/354 (16%), Positives = 105/354 (29%), Gaps = 104/354 (29%)

Query: 348 GDLSSLTRLDLSRNMLNGSIPLSLGKISHLEYLDLSNNKMNGTLSEIHFVNLTKLTWFSA 407
            +  SL+  +   N ++G+           E   L     N  +S +    + + +    
Sbjct: 8   NNNFSLS-QNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSELQL 66

Query: 408 SGNSLILQVNPNWVPPFQLKTLLLMSCHLGPQFPSWLHSQKNLSVLDISNARISDTIPRW 467
           +  +L                            P  L     ++VL+I+   +       
Sbjct: 67  NRLNL-------------------------SSLPDNL--PPQITVLEITQNALIS----- 94

Query: 468 FWNSIFQLSGIIPESFKNFSNLEVLNLGDNEFVGKIPTWMGEGFTSLLILILRSNKFDGF 527
                      +PE     ++LE L+  DN     +P    E   SL  L + +N+    
Sbjct: 95  -----------LPELP---ASLEYLDACDNRLS-TLP----ELPASLKHLDVDNNQLT-M 134

Query: 528 LPIQLCRLTSLQILDVANNSLSGTMPGCVNNFSAMATIDSSHQSNAMSYFEVTAYDCEVL 587
           LP        L+ ++  NN L+  +P    +                          EVL
Sbjct: 135 LPELPA---LLEYINADNNQLT-MLPELPTSL-------------------------EVL 165

Query: 588 EDASIVMKGSMVEYNSI------LNLVRIIDVSKNNFSGEIPMELTYLRGLQS----LNL 637
                      V  N +         +  +DVS N     +P         +        
Sbjct: 166 S----------VRNNQLTFLPELPESLEALDVSTNLLE-SLPAVPVRNHHSEETEIFFRC 214

Query: 638 SHNIFTGQIPENIGNLISIESLDFSTNQLSSKISQSMSSLSFLNHLNVSNNLLT 691
             N  T  IPENI +L    ++    N LSS+I +S+S  +     +      +
Sbjct: 215 RENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFS 267

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 63.1 bits (153), Expect = 2e-10
 Identities = 59/371 (15%), Positives = 114/371 (30%), Gaps = 93/371 (25%)

Query: 366 SIPLSLGKISHLEYLDLSNNKMNGTLSEIHFVNLTKLTWFSASGNSLILQVNPNWVPPFQ 425
           SI L +     L   +   N ++GT ++  F    K    +  G +             +
Sbjct: 2   SIMLPINNNFSLS-QNSFYNTISGTYADY-FSAWDKWEKQALPGENRN-----------E 48

Query: 426 LKTLLLMSCHLGPQFPSWLHSQKNLSVLDISNARISDTIPRWFWNSIFQLSGIIPESFKN 485
             +LL   C +              S L ++   +S                 +P++   
Sbjct: 49  AVSLLK-ECLI-----------NQFSELQLNRLNLSS----------------LPDNL-- 78

Query: 486 FSNLEVLNLGDNEFVGKIPTWMGEGFTSLLILILRSNKFDGFLPIQLCRLTSLQILDVAN 545
              + VL +  N  +  +P    E   SL  L    N+             SL+ LDV N
Sbjct: 79  PPQITVLEITQNALI-SLP----ELPASLEYLDACDNRLSTLPE----LPASLKHLDVDN 129

Query: 546 NSLSGTMPGCVNNFSAMATIDSSHQSNAMSYFEVTAYDCEVLEDASIVMKGSMVEYNSIL 605
           N L+  +P           I++ +  N ++                              
Sbjct: 130 NQLT-MLPELPALLE---YINADN--NQLTMLP-----------------------ELPT 160

Query: 606 NLVRIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQIPENIGNLISIES----LDF 661
           +L  ++ V  N  +  +P        L++L++S N+    +P         E        
Sbjct: 161 SL-EVLSVRNNQLT-FLPELPE---SLEALDVSTNLLE-SLPAVPVRNHHSEETEIFFRC 214

Query: 662 STNQLSSKISQSMSSLSFLNHLNVSNNLLTGKIPSSTQLQSFDASCFVGNNLCGPPLPSC 721
             N+++  I +++ SL     + + +N L+ +I  S   Q+     + G  +        
Sbjct: 215 RENRITH-IPENILSLDPTCTIILEDNPLSSRIRESLSQQTA-QPDYHGPRIYFSMSDGQ 272

Query: 722 TENNARAPKDP 732
                R   D 
Sbjct: 273 QNTLHRPLADA 283

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 79.6 bits (197), Expect = 3e-17
 Identities = 27/148 (18%), Positives = 59/148 (39%), Gaps = 17/148 (11%)

Query: 112 SLVDLKHLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRCL 171
           +   +  LT++ L+  +   +     +    N++ L ++        P  +  LSNL  L
Sbjct: 39  TEAQMNSLTYITLANINVTDL---TGIEYAHNIKDLTINNIHATNYNP--ISGLSNLERL 93

Query: 172 DLSWSEYALQVHSFSWLSGQIPNRLGNLTSLRHLDLSANKFNSTTAGWLSKFNHLEFLSL 231
            +   +          ++      L  LTSL  LD+S +  + +    ++    +  + L
Sbjct: 94  RIMGKD----------VTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDL 143

Query: 232 SSNGLQGTISSIGLENLTSIKTIDLSLN 259
           S NG    I    L+ L  +K++++  +
Sbjct: 144 SYNGAITDIM--PLKTLPELKSLNIQFD 169

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 77.7 bits (192), Expect = 2e-16
 Identities = 30/215 (13%), Positives = 67/215 (31%), Gaps = 46/215 (21%)

Query: 198 NLTSLRHLDLSANKFNSTTAGWLSKFNHLEFLSLSSNGLQGTISSI-GLENLTSIKTIDL 256
              +  +  L  +   + T    ++ N L +++L++      ++ + G+E   +IK + +
Sbjct: 21  TFKAYLNGLLGQSSTANIT---EAQMNSLTYITLANIN----VTDLTGIEYAHNIKDLTI 73

Query: 257 SLNFELGGPIPTSFVRLCELTSIDVSDVKLSQDLSQVLDILSACGASALESLVFSSSQIS 316
           +                        ++      LS             LE L      ++
Sbjct: 74  NNI--------------------HATNYNPISGLSN------------LERLRIMGKDVT 101

Query: 317 GHLTSQLGQFKSLRTLSLDDNCISGPLPPALGDLSSLTRLDLSRNMLNGSIPLSLGKISH 376
                 L    SL  L +  +     +   +  L  +  +DLS N     I   L  +  
Sbjct: 102 SDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPE 160

Query: 377 LEYLDLSNNKMNGTLSEI-HFVNLTKLTWFSASGN 410
           L+ L++  +     + +     +  KL    A   
Sbjct: 161 LKSLNIQFDG----VHDYRGIEDFPKLNQLYAFSQ 191

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 70.4 bits (173), Expect = 5e-14
 Identities = 31/224 (13%), Positives = 72/224 (32%), Gaps = 41/224 (18%)

Query: 239 TISSIGLENLTSIKTIDLSLNFELGGPIPTSFVRLCELTSIDVSDVKLSQDLSQVLDILS 298
              +I          ++  L       I  +  ++  LT I ++++ ++       D+  
Sbjct: 13  DNVNIPDSTFK--AYLNGLLGQSSTANI--TEAQMNSLTYITLANINVT-------DLTG 61

Query: 299 ACGASALESLVFSSSQISGHLTSQLGQFKSLRTLSLDDNCISGPLPPALGDLSSLTRLDL 358
              A  ++ L  ++   +    + +    +L  L +    ++    P L  L+SLT LD+
Sbjct: 62  IEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDI 119

Query: 359 SRNMLNGSIPLSLGKISHLEYLDLSNNKMNGTLSEIHFVNLTKLTWFSASGNSLILQVNP 418
           S +  + SI   +  +  +  +DLS N     +  +    L +L   +   +        
Sbjct: 120 SHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLK--TLPELKSLNIQFD-------- 169

Query: 419 NWVPPFQLKTLLLMSCHLGPQFPSWLHSQKNLSVLDISNARISD 462
                  +                 +     L+ L   +  I  
Sbjct: 170 ------GVHDY------------RGIEDFPKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 66.1 bits (162), Expect = 1e-12
 Identities = 27/131 (20%), Positives = 48/131 (36%), Gaps = 18/131 (13%)

Query: 113 LVDLKHLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRCLD 172
           +  L +L  L + G D    +IP  L  L +L  L++S +     I  ++  L  +  +D
Sbjct: 84  ISGLSNLERLRIMGKDVTSDKIP-NLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSID 142

Query: 173 LSWSEYALQVHSFSWLSGQIPNRLGNLTSLRHLDLSANKFNSTTAGWLSKFNHLEFLSLS 232
           LS++     +     L          L  L+ L++  +  +      +  F  L  L   
Sbjct: 143 LSYNG---AITDIMPLK--------TLPELKSLNIQFDGVHDYRG--IEDFPKLNQLYAF 189

Query: 233 SNGLQGTISSI 243
           S     TI   
Sbjct: 190 SQ----TIGGK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 63.8 bits (156), Expect = 1e-11
 Identities = 30/226 (13%), Positives = 69/226 (30%), Gaps = 51/226 (22%)

Query: 325 QFKSLRTLSLDDNCISGPLPPALGDLSSLTRLDLSRNMLNGSIPLSLGKISHLEYLDLSN 384
            FK+     L  +  +         ++SLT + L+   +     +      +++ L ++N
Sbjct: 21  TFKAYLNGLLGQSSTA---NITEAQMNSLTYITLANINVTDLTGIE--YAHNIKDLTINN 75

Query: 385 NKMNGTLSEIHFVNLTKLTWFSASGNSLILQVNPNWVPPFQLKTLLLMSCHLGPQFPSWL 444
                  +      ++ L+                      L+ L +M   +       L
Sbjct: 76  IH----ATNY--NPISGLS---------------------NLERLRIMGKDVTSDKIPNL 108

Query: 445 HSQKNLSVLDISNARISDTIPRWFWNSIFQLSGIIPESFKNFSNLEVLNLGDNEFVGKIP 504
               +L++LDIS++   D                I         +  ++L  N  +  I 
Sbjct: 109 SGLTSLTLLDISHSAHDD---------------SILTKINTLPKVNSIDLSYNGAITDIM 153

Query: 505 TWMGEGFTSLLILILRSNKFDGFLPIQLCRLTSLQILDVANNSLSG 550
               +    L  L ++ +    +  I+      L  L   + ++ G
Sbjct: 154 PL--KTLPELKSLNIQFDGVHDYRGIE--DFPKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 49.6 bits (119), Expect = 6e-07
 Identities = 32/246 (13%), Positives = 79/246 (32%), Gaps = 54/246 (21%)

Query: 447 QKNLSVLDISNARISDTIPRWFWNSIFQLSGIIPESFKNFSNLEVLNLGDNEFVGKIPTW 506
           ++        N  I D+  + + N +   S     +    ++L  + L +   V  +   
Sbjct: 4   EQTGLKASQDNVNIPDSTFKAYLNGLLGQSSTANITEAQMNSLTYITLANIN-VTDLTGI 62

Query: 507 MGEGFTSLLILILRSNKFDGFLPIQLCRLTSLQILDVANNSLSGTMPGCVNNFSAMATID 566
             E   ++  L + +     + PI    L++L+ L +    ++      ++  +      
Sbjct: 63  --EYAHNIKDLTINNIHATNYNPIS--GLSNLERLRIMGKDVTSDKIPNLSGLT------ 112

Query: 567 SSHQSNAMSYFEVTAYDCEVLEDASIVMKGSMVEYNSILNLVRIIDVSKNNFSGEIPMEL 626
                                                  +L  ++D+S +     I  ++
Sbjct: 113 ---------------------------------------SL-TLLDISHSAHDDSILTKI 132

Query: 627 TYLRGLQSLNLSHNIFTGQIPENIGNLISIESLDFSTNQLSSKISQSMSSLSFLNHLNVS 686
             L  + S++LS+N     I   +  L  ++SL+   + +     + +     LN L   
Sbjct: 133 NTLPKVNSIDLSYNGAITDI-MPLKTLPELKSLNIQFDGVHD--YRGIEDFPKLNQLYAF 189

Query: 687 NNLLTG 692
           +  + G
Sbjct: 190 SQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 47.6 bits (114), Expect = 3e-06
 Identities = 17/88 (19%), Positives = 37/88 (42%), Gaps = 2/88 (2%)

Query: 609 RIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQIPENIGNLISIESLDFSTNQLSS 668
           + + ++  + +   P  ++ L  L+ L +     T     N+  L S+  LD S +    
Sbjct: 69  KDLTINNIHATNYNP--ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDD 126

Query: 669 KISQSMSSLSFLNHLNVSNNLLTGKIPS 696
            I   +++L  +N +++S N     I  
Sbjct: 127 SILTKINTLPKVNSIDLSYNGAITDIMP 154

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 79.7 bits (197), Expect = 2e-16
 Identities = 51/295 (17%), Positives = 91/295 (30%), Gaps = 62/295 (21%)

Query: 113 LVDLKHLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRCLD 172
                     +L                L ++  +  + ++   +    +  L N+  L 
Sbjct: 20  DDAFAETIKDNLKKKSVTDA---VTQNELNSIDQIIANNSDIKSVQG--IQYLPNVTKLF 74

Query: 173 LSWSEYALQVHSFSWLSGQIPNRLGNLTSLRHLDLSANKFNSTTAGWLSKFNHLEFLSLS 232
           L+ +    ++             L NL +L  L L  NK    ++  L     L+ LSL 
Sbjct: 75  LNGN----KLTDIK--------PLANLKNLGWLFLDENKVKDLSS--LKDLKKLKSLSLE 120

Query: 233 SNGLQGTISSI-GLENLTSIKTIDLSLNFELGGPIPTSFVRLCELTSIDVSDVKLSQDLS 291
            NG    IS I GL +L  ++++ L  N                                
Sbjct: 121 HNG----ISDINGLVHLPQLESLYLGNN-------------------------------- 144

Query: 292 QVLDILSACGASALESLVFSSSQISGHLTSQLGQFKSLRTLSLDDNCISGPLPPALGDLS 351
           ++ DI      + L++L    +QIS      L     L+ L L  N IS     AL  L 
Sbjct: 145 KITDITVLSRLTKLDTLSLEDNQISD--IVPLAGLTKLQNLYLSKNHISDL--RALAGLK 200

Query: 352 SLTRLDLSRNMLNGSIPLSLGKISHLEYLDLSNNKMNG--TLSEIHFVNLTKLTW 404
           +L  L+L               +     +  ++  +     +S+        + W
Sbjct: 201 NLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPNVKW 255

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 62.0 bits (151), Expect = 1e-10
 Identities = 44/247 (17%), Positives = 86/247 (34%), Gaps = 35/247 (14%)

Query: 321 SQLGQFKSLRTLSLDDNCISGPLPPALGDLSSLTRLDLSRNMLNGSIPLSLGKISHLEYL 380
                F      +L    ++  +     +L+S+ ++  + + +  S+   +  + ++  L
Sbjct: 18  FSDDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SVQ-GIQYLPNVTKL 73

Query: 381 DLSNNKMNGTLSEI-HFVNLTKLTWFSASGNSLILQVNPNWVPPFQLKTLLLMSCHLGPQ 439
            L+ NK    L++I    NL  L W     N +    +   +   +LK+L L    +   
Sbjct: 74  FLNGNK----LTDIKPLANLKNLGWLFLDENKVKDLSSLKDLK--KLKSLSLEHNGI--S 125

Query: 440 FPSWLHSQKNLSVLDISNARISDTIPRWFWNSIFQLSGIIPESFKNFSNLEVLNLGDNEF 499
             + L     L  L + N +I+D                        + L+ L+L DN+ 
Sbjct: 126 DINGLVHLPQLESLYLGNNKITD-----------------ITVLSRLTKLDTLSLEDNQ- 167

Query: 500 VGKIPTWMGEGFTSLLILILRSNKFDGFLPIQLCRLTSLQILDVANNSLSGTMPGCVNNF 559
           +  I      G T L  L L  N         L  L +L +L++ +           +N 
Sbjct: 168 ISDIVPL--AGLTKLQNLYLSKNHISDLRA--LAGLKNLDVLELFSQECLNKPINHQSNL 223

Query: 560 SAMATID 566
               T+ 
Sbjct: 224 VVPNTVK 230

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 61.2 bits (149), Expect = 3e-10
 Identities = 51/287 (17%), Positives = 84/287 (29%), Gaps = 66/287 (22%)

Query: 240 ISSI-GLENLTSIKTIDLSLNFELGGPIPTSFVRLCELTSIDVSDVKLSQDLSQVLDILS 298
           I  I   +        +L     +   +  +   L  +  I  ++  +         +  
Sbjct: 14  IKQIFSDDAFAETIKDNLKKK-SVTDAVTQN--ELNSIDQIIANNSDIK-------SVQG 63

Query: 299 ACGASALESLVFSSSQISGHLTSQLGQFKSLRTLSLDDNCISGPLPPALGDLSSLTRLDL 358
                 +  L  + ++++      L   K+L  L LD+N +      +L DL  L  L L
Sbjct: 64  IQYLPNVTKLFLNGNKLTD--IKPLANLKNLGWLFLDENKVKDL--SSLKDLKKLKSLSL 119

Query: 359 SRNMLNGSIPLSLGKISHLEYLDLSNNKMNGTLSEIH-FVNLTKLTWFSASGNSLILQVN 417
             N ++  I   L  +  LE L L NNK    +++I     LTKL   S   N       
Sbjct: 120 EHNGIS-DIN-GLVHLPQLESLYLGNNK----ITDITVLSRLTKLDTLSLEDN------- 166

Query: 418 PNWVPPFQLKTLLLMSCHLGPQFPSWLHSQKNLSVLDISNARISDTIPRWFWNSIFQLSG 477
                  Q+  +              L     L  L +S   ISD               
Sbjct: 167 -------QISDI------------VPLAGLTKLQNLYLSKNHISDL-------------- 193

Query: 478 IIPESFKNFSNLEVLNLGDNEFVGKIPTWMGEGFTSLLILILRSNKF 524
               +     NL+VL L   E +   P            +       
Sbjct: 194 ---RALAGLKNLDVLELFSQECL-NKPINHQSNLVVPNTVKNTDGSL 236

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 53.5 bits (129), Expect = 8e-08
 Identities = 52/348 (14%), Positives = 105/348 (30%), Gaps = 107/348 (30%)

Query: 347 LGDLSSLTRLDLSRNMLNGSIPLSLGKISHLEYLDLSNNKMNGTLSEIHFV-NLTKLTWF 405
               +   + +L +  +  ++  +  +++ ++ +  +N+     +  +  +  L  +T  
Sbjct: 20  DDAFAETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSD----IKSVQGIQYLPNVTKL 73

Query: 406 SASGNSLILQVNPNWVPPFQLKTLLLMSCHLGPQFPSWLHSQKNLSVLDISNARISDTIP 465
             +GN              +L  +              L + KNL  L +   ++ D   
Sbjct: 74  FLNGN--------------KLTDI------------KPLANLKNLGWLFLDENKVKDL-- 105

Query: 466 RWFWNSIFQLSGIIPESFKNFSNLEVLNLGDNEFVGKIPTWMGEGFTSLLILILRSNKFD 525
                           S K+   L+ L+L  N  +  I          L  L L +NK  
Sbjct: 106 ---------------SSLKDLKKLKSLSLEHNG-ISDINGL--VHLPQLESLYLGNNKIT 147

Query: 526 GFLPIQLCRLTSLQILDVANNSLSGTMPGCVNNFSAMATIDSSHQSNAMSYFEVTAYDCE 585
                 L RLT L  L + +N +S                                 D  
Sbjct: 148 DITV--LSRLTKLDTLSLEDNQIS---------------------------------DIV 172

Query: 586 VLEDASIVMKGSMVEYNSILNLVRIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQ 645
            L                 L  ++ + +SKN+ S ++   L  L+ L  L L       +
Sbjct: 173 PLAG---------------LTKLQNLYLSKNHIS-DLR-ALAGLKNLDVLELFSQECLNK 215

Query: 646 IPENIGNLISIESLDFSTNQLSSKISQSMSSLSFLNHLNVSNNLLTGK 693
              +  NL+   ++  +   L +   + +S        NV  +L    
Sbjct: 216 PINHQSNLVVPNTVKNTDGSLVTP--EIISDDGDYEKPNVKWHLPEFT 261

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 49.3 bits (118), Expect = 2e-06
 Identities = 43/213 (20%), Positives = 78/213 (36%), Gaps = 41/213 (19%)

Query: 481 ESFKNFSNLEVLNLGDNEFVGKIPTWMGEGFTSLLILILRSNKFDGFLPIQLCRLTSLQI 540
            S   F+     NL     V    T       S+  +I  ++       IQ   L ++  
Sbjct: 18  FSDDAFAETIKDNLKKKS-VTDAVTQ--NELNSIDQIIANNSDIKSVQGIQ--YLPNVTK 72

Query: 541 LDVANNSLSGTMPGCVNNFSAMATIDSSHQSNAMSYFEVTAYDCEVLEDASIVMKGSMVE 600
           L +  N L+   P  + N   +  +      N +        D   L+D           
Sbjct: 73  LFLNGNKLTDIKP--LANLKNLGWLFLDE--NKVK-------DLSSLKD----------- 110

Query: 601 YNSILNLVRIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQI--PENIGNLISIES 658
               L  ++ + +  N  S +I   L +L  L+SL L +N    +I     +  L  +++
Sbjct: 111 ----LKKLKSLSLEHNGIS-DIN-GLVHLPQLESLYLGNN----KITDITVLSRLTKLDT 160

Query: 659 LDFSTNQLSSKISQSMSSLSFLNHLNVSNNLLT 691
           L    NQ+S  I   ++ L+ L +L +S N ++
Sbjct: 161 LSLEDNQISD-IV-PLAGLTKLQNLYLSKNHIS 191

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 48.9 bits (117), Expect = 2e-06
 Identities = 28/151 (18%), Positives = 52/151 (34%), Gaps = 22/151 (14%)

Query: 111 PSLVDLKHLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRC 170
             LV L  L  L L  N    I     L  L  L  L+L   + + I+P  L  L+ L+ 
Sbjct: 128 NGLVHLPQLESLYLGNN---KITDITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQN 182

Query: 171 LDLSWSEYALQVHSFSWLSGQIPNRLGNLTSLRHLDLSANKFNSTTAGWLSKFNHLEFLS 230
           L LS +     +     L+         L +L  L+L + +  +      S       + 
Sbjct: 183 LYLSKN----HISDLRALA--------GLKNLDVLELFSQECLNKPINHQSNLVVPNTVK 230

Query: 231 LSSNGLQGTISSI-GLENLTSIKTIDLSLNF 260
                  G++ +   + +    +  ++  + 
Sbjct: 231 N----TDGSLVTPEIISDDGDYEKPNVKWHL 257

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 79.2 bits (195), Expect = 3e-16
 Identities = 42/235 (17%), Positives = 67/235 (28%), Gaps = 27/235 (11%)

Query: 328 SLRTLSLDDNCISGPLPP---ALGDLSSLTRLDLSRNMLNGSIPLSLGKISH--LEYLDL 382
           SL+ L++    I   +      +  +S L  L L    + G+ P  L + +   L  L+L
Sbjct: 69  SLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNL 128

Query: 383 SNNKMNGT---LSEIHFVNLTKLTWFSASGNSLILQVNPNWVPPFQLKTLLL----MSCH 435
            N         L+E+       L   S +    +            L TL L        
Sbjct: 129 RNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGE 188

Query: 436 LGPQFPSWLHSQKNLSVLDISNARISDTIPRWFWNSIFQLSGIIPESFKNFSNLEVLNLG 495
            G            L VL + N              +   SG+          L+ L+L 
Sbjct: 189 RGLISALCPLKFPTLQVLALRN------------AGMETPSGVCSALAAARVQLQGLDLS 236

Query: 496 DNEFVGKIPTWMGEGFTSLLILILRSNKFDGFLPIQLCRLTSLQILDVANNSLSG 550
            N           +  + L  L L                  L +LD++ N L  
Sbjct: 237 HNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPK---GLPAKLSVLDLSYNRLDR 288

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 78.4 bits (193), Expect = 6e-16
 Identities = 45/262 (17%), Positives = 79/262 (30%), Gaps = 24/262 (9%)

Query: 111 PSLVDLKHLTHLDLSGNDFQGIRIPKYLG--SLKNLRYLNLSGAEFAGIIPHQLGNL--S 166
             ++    L  L +         +   L    +  L+ L L   E  G  P  L      
Sbjct: 62  TDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGP 121

Query: 167 NLRCLDLSWSEYALQVHSFSWLSGQIPNRLGNLTSLRHLDLSANKFNSTTAGWLSKFNHL 226
           +L  L+L      +   +      ++   L     L+ L ++     + +   +  F  L
Sbjct: 122 DLNILNLR----NVSWATRDAWLAELQQWL--KPGLKVLSIAQAHSLNFSCEQVRVFPAL 175

Query: 227 EFLSLSSNGLQGTIS---SIGLENLTSIKTIDLSLNF--ELGGPIPTSFVRLCELTSIDV 281
             L LS N   G      ++      +++ + L         G          +L  +D+
Sbjct: 176 STLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDL 235

Query: 282 SDVKLSQDLSQVLDILSACGASALESLVFSSSQISGHLTSQLGQFKSLRTLSLDDNCISG 341
           S       L       S    S L SL  S + +   +   L     L  L L  N +  
Sbjct: 236 SHNS----LRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGL--PAKLSVLDLSYNRLDR 288

Query: 342 PLPPALGDLSSLTRLDLSRNML 363
              P+  +L  +  L L  N  
Sbjct: 289 --NPSPDELPQVGNLSLKGNPF 308

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 77.2 bits (190), Expect = 2e-15
 Identities = 55/291 (18%), Positives = 92/291 (31%), Gaps = 41/291 (14%)

Query: 177 EYALQVHSFSWLSGQIPNRLGNLTSLRHLDLSANKFNSTTAGWLSKF---NHLEFLSLSS 233
           EY L+        GQ  + + +L SL+ L + A +  S       +    + L+ L+L +
Sbjct: 46  EYLLKRVDTEADLGQFTDIIKSL-SLKRLTVRAARIPSRILFGALRVLGISGLQELTLEN 104

Query: 234 NGLQGTISSIGLENLTSIKTIDLSLNFELGGPIPTSFVRLCELTSIDVSDVKLSQDLSQV 293
             + GT                         P P       +L  +++ +V         
Sbjct: 105 LEVTGTA------------------------PPPLLEATGPDLNILNLRNVSW-ATRDAW 139

Query: 294 LDILSACGASALESLVFSSSQISGHLTSQLGQFKSLRTLSLDDNCISGPLP----PALGD 349
           L  L       L+ L  + +        Q+  F +L TL L DN   G            
Sbjct: 140 LAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLK 199

Query: 350 LSSLTRLDLSRNMLN---GSIPLSLGKISHLEYLDLSNNKMNGTLSEIHFVNLTKLTWFS 406
             +L  L L    +    G           L+ LDLS+N +            ++L   +
Sbjct: 200 FPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLN 259

Query: 407 ASGNSLILQVNPNWVPPFQLKTLLLMSCHLGPQFPSWLHSQKNLSVLDISN 457
            S     L+  P  +P  +L  L L    L  + PS       +  L +  
Sbjct: 260 LSFTG--LKQVPKGLPA-KLSVLDLSYNRLD-RNPSPDELP-QVGNLSLKG 305

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 72.2 bits (177), Expect = 8e-14
 Identities = 57/300 (19%), Positives = 98/300 (32%), Gaps = 42/300 (14%)

Query: 118 HLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRCLDLSWSE 177
            L  +D   +  Q   I K L    +L+ L +  A     I         LR L +S   
Sbjct: 48  LLKRVDTEADLGQFTDIIKSL----SLKRLTVRAARIPSRILFGA-----LRVLGIS--- 95

Query: 178 YALQVHSFSWLSGQIPNRLGNLTSLRHLDLSANKFNSTTAGWLSKFNHLEFLSLSSNGLQ 237
                             L  LT L +L+++               N L   ++S     
Sbjct: 96  -----------------GLQELT-LENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRD 137

Query: 238 GTISSIGLENLTSIKTIDLSLNFELGGPIPTSFVRLCELTSIDVSDVKLSQDLSQVLDIL 297
             ++ +       +K + ++    L             L+++D+SD     +   ++  L
Sbjct: 138 AWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVR-VFPALSTLDLSDNPELGERG-LISAL 195

Query: 298 SACGASALESLVFSS---SQISGHLTSQLGQFKSLRTLSLDDNCISG-PLPPALGDLSSL 353
                  L+ L   +      SG  ++       L+ L L  N +      P+    S L
Sbjct: 196 CPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQL 255

Query: 354 TRLDLSRNMLNGSIPLSLGKISHLEYLDLSNNKMNGTLSEIHFVNLTKLTWFSASGNSLI 413
             L+LS   L   +P  L   + L  LDLS N+++   S      +  L   S  GN  +
Sbjct: 256 NSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRNPSPDELPQVGNL---SLKGNPFL 309

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 70.7 bits (173), Expect = 2e-13
 Identities = 56/318 (17%), Positives = 98/318 (30%), Gaps = 48/318 (15%)

Query: 398 NLTKLTWFSASGNSLILQVNPNWVPPFQLKTLLLMS-CHLGPQFPSWLHSQKNLSVLDIS 456
           +  K  W SA  N L       +     L+ LL            + +    +L  L + 
Sbjct: 18  SDPKPDWSSAF-NCLGAADVELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVR 76

Query: 457 NARISDTIPRWFWNSI------------FQLSGIIPESFKNFS--NLEVLNLGDNEFVG- 501
            ARI   I       +             +++G  P      +  +L +LNL +  +   
Sbjct: 77  AARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR 136

Query: 502 --KIPTWMGEGFTSLLILILRSNKFDGFLPIQLCRLTSLQILDVANNSLSGTMP----GC 555
              +          L +L +       F   Q+    +L  LD+++N   G        C
Sbjct: 137 DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALC 196

Query: 556 VNNFSAMATIDSSHQSNAMSYFEVTAYDCEVLEDASIVMKGSMVEYNSILNLVRIIDVSK 615
              F  +  +   +                 +E  S V          +  L    D+S 
Sbjct: 197 PLKFPTLQVLALRNAG---------------METPSGVCSALAAARVQLQGL----DLSH 237

Query: 616 NNFSGEIPMEL-TYLRGLQSLNLSHNIFTGQIPENIGNLISIESLDFSTNQLSSKISQSM 674
           N+           +   L SLNLS      Q+P+ +     +  LD S N+L    + S 
Sbjct: 238 NSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLPA--KLSVLDLSYNRLDR--NPSP 292

Query: 675 SSLSFLNHLNVSNNLLTG 692
             L  + +L++  N    
Sbjct: 293 DELPQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 53.0 bits (127), Expect = 2e-07
 Identities = 36/247 (14%), Positives = 79/247 (31%), Gaps = 27/247 (10%)

Query: 465 PRWFWNSIFQLSGIIP-ESFKNFSNLEVLNLGDNEFVGKIPTWMGEGFTSLLILILRSNK 523
           P+  W+S F   G    E +    +LE L    +               SL  L +R+ +
Sbjct: 20  PKPDWSSAFNCLGAADVELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAAR 79

Query: 524 FDGFLPIQLCRL---TSLQILDVANNSLSGTMPGCVNNFSAMATIDSSHQSNAMSYFEVT 580
               +     R+   + LQ L + N  ++GT P        +           +      
Sbjct: 80  IPSRILFGALRVLGISGLQELTLENLEVTGTAP-----PPLLEATGPDLNILNLRNVSWA 134

Query: 581 AYDCEVLEDASIVMKGSMVEYNSILNLVRIIDVSKNNFSGEIPMELTYLRGLQSLNLSHN 640
             D  + E               +   ++++ +++ +       ++     L +L+LS N
Sbjct: 135 TRDAWLAEL-----------QQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDN 183

Query: 641 IFTGQIPENI----GNLISIESLDFSTNQLSS---KISQSMSSLSFLNHLNVSNNLLTGK 693
              G+             +++ L      + +     S   ++   L  L++S+N L   
Sbjct: 184 PELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDA 243

Query: 694 IPSSTQL 700
             + +  
Sbjct: 244 AGAPSCD 250

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 52.2 bits (125), Expect = 3e-07
 Identities = 27/116 (23%), Positives = 34/116 (29%), Gaps = 27/116 (23%)

Query: 103 SMLSGNVNPSLVDLKHLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQL 162
              SG  +        L  LDLS N  +             L  LNLS      +     
Sbjct: 214 ETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPK--- 270

Query: 163 GNLSNLRCLDLSWSEYALQVHSFSWLSGQIPNRL------GNLTSLRHLDLSANKF 212
           G  + L  LDLS+                  NRL        L  + +L L  N F
Sbjct: 271 GLPAKLSVLDLSY------------------NRLDRNPSPDELPQVGNLSLKGNPF 308

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 78.2 bits (193), Expect = 1e-15
 Identities = 61/372 (16%), Positives = 108/372 (29%), Gaps = 88/372 (23%)

Query: 119 LTHLDLSGNDF--QGIR-IPKYLGSLKNLRYLNLS----GAEFAGIIPHQLGNLSNLRCL 171
           +    L  +    +  + +   L    +++ + LS    G E A  +   + +  +L   
Sbjct: 6   IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIA 65

Query: 172 DLSWSEYALQVHSFSWLSGQIPNRLGNLTSLRHLDLSANKFNSTTAGWLSKFNHLEFLSL 231
           + S                 +   L     L  + LS N F  T    L  F        
Sbjct: 66  EFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDF-------- 117

Query: 232 SSNGLQGTISSIGLENLTSIKTIDLSLNFELGGPIPTSFVRLCELTSIDVSDVKLSQDLS 291
                        L   T ++ + L  N  LG                  +  K+++ L 
Sbjct: 118 -------------LSKHTPLEHLYLHNN-GLG----------------PQAGAKIARALQ 147

Query: 292 QVLDILSACGASALESLVFSSSQISG----HLTSQLGQFKSLRTLSLDDNCI-----SGP 342
           ++     A  A  L S++   +++               + L T+ +  N I        
Sbjct: 148 ELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHL 207

Query: 343 LPPALGDLSSLTRLDLSRNML--NGSIPLS--LGKISHLEYLDLSNNKMNGTLSEIHFVN 398
           L   L     L  LDL  N     GS  L+  L    +L  L L++  +           
Sbjct: 208 LLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLL----------- 256

Query: 399 LTKLTWFSASGNSLI---LQVNPNWVPPFQLKTLLLMSCHLGPQFPSWL-----HSQKNL 450
                  SA G + +        N      L+TL L    +       L         +L
Sbjct: 257 -------SARGAAAVVDAFSKLEN----IGLQTLRLQYNEIELDAVRTLKTVIDEKMPDL 305

Query: 451 SVLDISNARISD 462
             L+++  R S+
Sbjct: 306 LFLELNGNRFSE 317

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 74.7 bits (184), Expect = 2e-14
 Identities = 59/328 (17%), Positives = 96/328 (29%), Gaps = 66/328 (20%)

Query: 112 SLVDLKHLTHLDLSGNDF--QGIR-IPKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNL 168
            L++   +  + LSGN    +  R + + + S K+L     S            G + + 
Sbjct: 27  VLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDI--------FTGRVKDE 78

Query: 169 RCLDLSWSEYALQVHSFSWLSGQIPNRLGNLTSLRHLDLSANKFNSTTAGWLSKF----N 224
               L                  +   L     L  + LS N F  T    L  F     
Sbjct: 79  IPEALR----------------LLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHT 122

Query: 225 HLEFLSLSSNGLQGTISSIGLENLTSIKTIDLSLNFELGGPIPTSFVRLCELTSIDVSDV 284
            LE L L +NG    +       +                P          L SI     
Sbjct: 123 PLEHLYLHNNG----LGPQAGAKIARALQELAVNKKAKNAP---------PLRSIICGRN 169

Query: 285 KLSQDLSQVL-DILSACGASALESLVFSSSQI-----SGHLTSQLGQFKSLRTLSLDDNC 338
           +L     +       +     L ++    + I        L   L   + L+ L L DN 
Sbjct: 170 RLENGSMKEWAKTFQSH--RLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNT 227

Query: 339 ISGP----LPPALGDLSSLTRLDLSRNML--NGSIP----LSLGKISHLEYLDLSNNKMN 388
            +      L  AL    +L  L L+  +L   G+       S  +   L+ L L  N++ 
Sbjct: 228 FTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIE 287

Query: 389 G----TLSEIHFVNLTKLTWFSASGNSL 412
                TL  +    +  L +   +GN  
Sbjct: 288 LDAVRTLKTVIDEKMPDLLFLELNGNRF 315

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 62.8 bits (153), Expect = 2e-10
 Identities = 51/310 (16%), Positives = 92/310 (29%), Gaps = 64/310 (20%)

Query: 276 LTSIDVSDVKLS-QDLSQVLDILSACGASALESLVFSSSQISG----HLTSQLGQFKSLR 330
           +    +    ++ +D   V  +L      +++ +V S + I       L+  +   K L 
Sbjct: 6   IEGKSLKLDAITTEDEKSVFAVLLED--DSVKEIVLSGNTIGTEAARWLSENIASKKDLE 63

Query: 331 TLSLDDNCISGP----------LPPALGDLSSLTRLDLSRNML--NGSIPLS--LGKISH 376
                D                L  AL     L  + LS N        PL   L K + 
Sbjct: 64  IAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTP 123

Query: 377 LEYLDLSNNKMN----GTLSEIHFVNLTKLTWFSASGNSLILQVNPNWVPPFQLKTLLLM 432
           LE+L L NN +       ++      L +L     + N+              L++++  
Sbjct: 124 LEHLYLHNNGLGPQAGAKIARA----LQELAVNKKAKNAP------------PLRSIICG 167

Query: 433 SCHLGPQ----FPSWLHSQKNLSVLDISNARISDTIPRWFWNSIFQLSGIIPESFKNFSN 488
              L       +     S + L  + +    I              +  ++ E       
Sbjct: 168 RNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPE----------GIEHLLLEGLAYCQE 217

Query: 489 LEVLNLGDNEFVGKIPTWMGEGF---TSLLILILRSNKF--DGFLPI----QLCRLTSLQ 539
           L+VL+L DN F     + +        +L  L L        G   +           LQ
Sbjct: 218 LKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQ 277

Query: 540 ILDVANNSLS 549
            L +  N + 
Sbjct: 278 TLRLQYNEIE 287

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 43.9 bits (104), Expect = 1e-04
 Identities = 41/301 (13%), Positives = 87/301 (28%), Gaps = 80/301 (26%)

Query: 426 LKTLLLMSCHLGPQ----FPSWLHSQKNLSVLDISNARISDTIPRWFWNSIFQLSGI--I 479
           ++   L    +  +      + L    ++  + +S   I                    +
Sbjct: 6   IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGT-------------EAARWL 52

Query: 480 PESFKNFSNLEVLNLGDNEFVGKIPTWMGEGF----------TSLLILILRSNKF--DGF 527
            E+  +  +LE+    D  F G++   + E              L  + L  N F     
Sbjct: 53  SENIASKKDLEIAEFSDI-FTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQ 111

Query: 528 LPI--QLCRLTSLQILDVANNSLSGTMPGCVNNFSAMATIDSSHQSNAMSYFEVTAYDCE 585
            P+   L + T L+ L + NN L    P                                
Sbjct: 112 EPLIDFLSKHTPLEHLYLHNNGLG---PQAGAKI------------------------AR 144

Query: 586 VLEDASIVMKGSMVEYNSILNLVRIIDVSKNNFSGE----IPMELTYLRGLQSLNLSHNI 641
            L++ ++       +    L   R I   +N                 R L ++ +  N 
Sbjct: 145 ALQELAV---NKKAKNAPPL---RSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNG 198

Query: 642 FTGQ-----IPENIGNLISIESLDFSTNQLSSK----ISQSMSSLSFLNHLNVSNNLLTG 692
              +     + E +     ++ LD   N  +      ++ ++ S   L  L +++ LL+ 
Sbjct: 199 IRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSA 258

Query: 693 K 693
           +
Sbjct: 259 R 259

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 76.8 bits (189), Expect = 3e-15
 Identities = 45/288 (15%), Positives = 86/288 (29%), Gaps = 49/288 (17%)

Query: 120 THLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRCLDLSWSEY- 178
                  +      IP  L   +N   L     +   I         +L  +++S ++  
Sbjct: 12  RVFLCQESKVT--EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVL 67

Query: 179 -ALQVHSFSWLSGQIPNRLGNLTSLRHLDLS-ANKFNSTTAGWLSKFNHLEFLSLSSNGL 236
             ++   FS           NL  L  + +  AN              +L++L +S+ G+
Sbjct: 68  EVIEADVFS-----------NLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGI 116

Query: 237 QGTISSIGLENLTSIKTIDLSLNFELGGPIPTSFVRLCELTSIDVSDVKLSQDLSQVLDI 296
           +  +  +   +      +D+  N  +      SFV L   +               +L  
Sbjct: 117 K-HLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFES--------------VILW- 160

Query: 297 LSACGASALESLVFSSSQISGHLTSQLGQFKSLRTLSLDDNCISGPLPPALGDLSSLTRL 356
           L+  G   + +  F+ +Q                    D+N +           S    L
Sbjct: 161 LNKNGIQEIHNSAFNGTQ-------------LDELNLSDNNNLEELPNDVFHGASGPVIL 207

Query: 357 DLSRNMLNGSIPLSLGKISHLEYLDLSNNKMNGTLSEIHFVNLTKLTW 404
           D+SR  ++      L  +  L      N K   TL     V L + + 
Sbjct: 208 DISRTRIHSLPSYGLENLKKLRARSTYNLKKLPTLE--KLVALMEASL 253

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 69.5 bits (170), Expect = 1e-12
 Identities = 39/247 (15%), Positives = 80/247 (32%), Gaps = 25/247 (10%)

Query: 305 LESLVFSSSQISGHLTSQLGQFKSLRTLSLDDNCISGPLPP-ALGDLSSLTRLDLSR-NM 362
              L F  +++          F  L  + +  N +   +      +L  L  + + + N 
Sbjct: 32  AIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANN 91

Query: 363 LNGSIPLSLGKISHLEYLDLSNNKMNGTLSEIHFVNLTKLTWFSASGNSLILQVNPNWVP 422
           L    P +   + +L+YL +SN  +   L ++H ++  +        N  I  +  N   
Sbjct: 92  LLYINPEAFQNLPNLQYLLISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTIERNSFV 150

Query: 423 --PFQLKTLLLMSCHLGPQFPSWLHSQKNLSVLDISNARISDTIPRWFWNSIFQLSGIIP 480
              F+   L L    +     S  +  +   +    N  +   +P               
Sbjct: 151 GLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLE-ELP--------------N 195

Query: 481 ESFKNFSNLEVLNLGDNEFVGKIPTWMGEGFTSLLILILRSNKFDGFLPIQLCRLTSLQI 540
           + F   S   +L++        +P++  E    L      + K    LP  L +L +L  
Sbjct: 196 DVFHGASGPVILDISRTRIH-SLPSYGLENLKKLRARSTYNLKK---LPT-LEKLVALME 250

Query: 541 LDVANNS 547
             +   S
Sbjct: 251 ASLTYPS 257

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 64.8 bits (158), Expect = 3e-11
 Identities = 43/227 (18%), Positives = 68/227 (29%), Gaps = 14/227 (6%)

Query: 191 QIPNRLGNLTSLRHLDLSANKFNSTTAGWLSKFNHLEFLSLSSNGLQGTISSIGLENLTS 250
           +IP+ L    +   L     K      G  S F  LE + +S N +   I +    NL  
Sbjct: 23  EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPK 80

Query: 251 IKTIDLSLNFELGGPIPTSFVRLCELTSIDVSDVKLSQDLSQVLDILSACGASALESLVF 310
           +  I +     L    P +F  L  L  + +S+  +     + L  +    +     L  
Sbjct: 81  LHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGI-----KHLPDVHKIHSLQKVLLDI 135

Query: 311 SS----SQISGHLTSQLGQFKSLRTLSLDDNCISGPLPPALGDLSSLTRLDLSRNMLNGS 366
                   I  +    L        L L+ N I      A              N L   
Sbjct: 136 QDNINIHTIERNSFVGLSF--ESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEEL 193

Query: 367 IPLSLGKISHLEYLDLSNNKMNGTLSEIHFVNLTKLTWFSASGNSLI 413
                   S    LD+S  +++ +L      NL KL   S      +
Sbjct: 194 PNDVFHGASGPVILDISRTRIH-SLPSYGLENLKKLRARSTYNLKKL 239

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 59.1 bits (143), Expect = 2e-09
 Identities = 34/235 (14%), Positives = 65/235 (27%), Gaps = 39/235 (16%)

Query: 326 FKSLRTLSLDDNCISGPLPPALGDLSSLTRLDLSRNMLNGSIPLS-LGKISHLEYLDLSN 384
            ++   L      +      A      L ++++S+N +   I       +  L  + +  
Sbjct: 29  PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88

Query: 385 NKMNGTLSEIHFVNLTKLTWFSASGNSLILQVNPNWVPPFQLKTLLLMSCHLGPQFPSWL 444
                 ++   F NL  L +   S   +        +P       L              
Sbjct: 89  ANNLLYINPEAFQNLPNLQYLLISNTGI------KHLPDVHKIHSL-------------- 128

Query: 445 HSQKNLSVLDIS-NARISDTIP-----------RWFWNSIFQLSGIIPESFKNFSNLEVL 492
                  +LDI  N  I  TI               W +   +  I   +F      E+ 
Sbjct: 129 ----QKVLLDIQDNINIH-TIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELN 183

Query: 493 NLGDNEFVGKIPTWMGEGFTSLLILILRSNKFDGFLPIQLCRLTSLQILDVANNS 547
              +N    ++P  +  G +  +IL +   +        L  L  L+     N  
Sbjct: 184 LSDNNNLE-ELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK 237

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 56.0 bits (135), Expect = 2e-08
 Identities = 43/207 (20%), Positives = 69/207 (33%), Gaps = 44/207 (21%)

Query: 112 SLVDLKHLTHLDLSGND---------FQG------IRI----------PKYLGSLKNLRY 146
           +      L  +++S ND         F        IRI          P+   +L NL+Y
Sbjct: 49  AFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQY 108

Query: 147 LNLSGAEFAGIIPHQLGNLSNLRCLDLSWSEY--ALQVHSFSWLSGQ------------- 191
           L +S      +      +      LD+  +     ++ +SF  LS +             
Sbjct: 109 LLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE 168

Query: 192 IPNRLGNLTSLRHLDLSA-NKFNSTTAGWLSKFNHLEFLSLSSNGLQGTISSIGLENLTS 250
           I N   N T L  L+LS  N             +    L +S   +  ++ S GLENL  
Sbjct: 169 IHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH-SLPSYGLENLKK 227

Query: 251 IKTIDLSLNFELGGPIPTSFVRLCELT 277
           ++        +L  P     V L E +
Sbjct: 228 LRARSTYNLKKL--PTLEKLVALMEAS 252

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 51.4 bits (123), Expect = 6e-07
 Identities = 50/314 (15%), Positives = 87/314 (27%), Gaps = 68/314 (21%)

Query: 328 SLRTLSLDDNCISGPLPPALGDLSSLTRLDLSRNMLNGSIPLSLGKISHLEYLDLSNNKM 387
           S R     ++ ++  +P  L    +   L      L      +      LE +++S N +
Sbjct: 10  SNRVFLCQESKVTE-IPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDV 66

Query: 388 NGTLSEIHFVNLTKLTWFSASGNSLILQVNPNWVPPFQLKTLLLMSCHLGPQFPSWLHSQ 447
              +    F NL KL        + +L +NP                           + 
Sbjct: 67  LEVIEADVFSNLPKLHEIRIEKANNLLYINPEA-----------------------FQNL 103

Query: 448 KNLSVLDISNARISDTIPRWFWNSIFQLSGIIPESFKNFSNLEVLNLGDNEFVGKIPTWM 507
            NL  L ISN  I   +P                   +     +L++ DN  +  I    
Sbjct: 104 PNLQYLLISNTGIK-HLP--------------DVHKIHSLQKVLLDIQDNINIHTIERNS 148

Query: 508 GEGFTSLL-ILILRSNKFDGFLPIQLCRLTSLQILDVANNSLSGTMPGCVNNFSAMATID 566
             G +    IL L  N                ++    NN+L        +  S    +D
Sbjct: 149 FVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILD 208

Query: 567 SSHQSNAMSYFEVTAYDCEVLEDASIVMKGSMVEYNSILNLVRIIDVSKNNFSGEIPMEL 626
            S     +        +                      NL ++   S  N   ++P  L
Sbjct: 209 ISR--TRIHSLPSYGLE----------------------NLKKLRARSTYNLK-KLPT-L 242

Query: 627 TYLRGLQSLNLSHN 640
             L  L   +L++ 
Sbjct: 243 EKLVALMEASLTYP 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 49.1 bits (117), Expect = 3e-06
 Identities = 40/217 (18%), Positives = 74/217 (34%), Gaps = 23/217 (10%)

Query: 474 QLSGIIPESFKNFSNLEVLNLGDNEFVGKIPTWMGEGFTSLLIL-ILRSNKFDGFLPIQL 532
           +L  I   +F  F +LE + +  N+ +  I   +      L  + I ++N      P   
Sbjct: 41  KLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAF 100

Query: 533 CRLTSLQILDVANNSLSGTMPGCVNNFSAMATIDSSHQSNAMSYFEVTAYDCEVLEDASI 592
             L +LQ L ++N  +   +P      S    +     +  +   E  ++          
Sbjct: 101 QNLPNLQYLLISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTIERNSFV--------- 150

Query: 593 VMKGSMVEYNSILNLVRIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQIPENI-G 651
                      +     I+ ++KN    EI         L  LNLS N    ++P ++  
Sbjct: 151 ----------GLSFESVILWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLEELPNDVFH 199

Query: 652 NLISIESLDFSTNQLSSKISQSMSSLSFLNHLNVSNN 688
                  LD S  ++ S  S  + +L  L   +  N 
Sbjct: 200 GASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNL 236

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 73.3 bits (179), Expect = 1e-13
 Identities = 43/247 (17%), Positives = 79/247 (31%), Gaps = 22/247 (8%)

Query: 167 NLRCLDLSWSEYALQVHSFSWLSGQIPNRLGNLTSLRHLDLSANKFNSTTAGWLSKFNHL 226
            +     S  E  L                     L   +LS  K        L     L
Sbjct: 320 VIWTGSDSQKECVLLKDRPECWCRDS----ATDEQLFRCELSVEKSTVLQ-SELESCKEL 374

Query: 227 EFLSLSSNGLQGTISSIGLENLTSIKTIDLSLNFELGGPIPTSFVRLCELTSIDVSDVKL 286
           + L   +     TI    +  + ++  +               F  L  +  +  + +  
Sbjct: 375 QELEPENKWCLLTI----ILLMRALDPLLYEKE------TLQYFSTLKAVDPMRAAYLDD 424

Query: 287 SQDLSQVLDILSACGASALESLVFSSSQISGHLTSQLGQFKSLRTLSLDDNCISGPLPPA 346
            +    + + +     + +  L  +   ++  +   L Q   +  L L  N +   LPPA
Sbjct: 425 LRSKFLLENSVLKMEYADVRVLHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRA-LPPA 481

Query: 347 LGDLSSLTRLDLSRNMLNGSIPLSLGKISHLEYLDLSNNKMNGTLSEI-HFVNLTKLTWF 405
           L  L  L  L  S N L  ++   +  +  L+ L L NN++    + I   V+  +L   
Sbjct: 482 LAALRCLEVLQASDNALE-NVD-GVANLPRLQELLLCNNRLQ-QSAAIQPLVSCPRLVLL 538

Query: 406 SASGNSL 412
           +  GNSL
Sbjct: 539 NLQGNSL 545

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 59.8 bits (144), Expect = 2e-09
 Identities = 31/140 (22%), Positives = 51/140 (36%), Gaps = 17/140 (12%)

Query: 96  EYEDYMRSMLSGNVNPSLVDLKHLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFA 155
            Y D +RS      +   ++   +  L L+  D   + +  +L  L  + +L+LS     
Sbjct: 420 AYLDDLRSKFLLENSVLKMEYADVRVLHLAHKD---LTVLCHLEQLLLVTHLDLSHNRLR 476

Query: 156 GIIPHQLGNLSNLRCLDLSWSEYALQVHSFSWLSGQIPNRLGNLTSLRHLDLSANKFNST 215
            + P  L  L  L  L  S +           + G     + NL  L+ L L  N+   +
Sbjct: 477 AL-PPALAALRCLEVLQASDNA-------LENVDG-----VANLPRLQELLLCNNRLQQS 523

Query: 216 TA-GWLSKFNHLEFLSLSSN 234
            A   L     L  L+L  N
Sbjct: 524 AAIQPLVSCPRLVLLNLQGN 543

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 57.8 bits (139), Expect = 9e-09
 Identities = 43/317 (13%), Positives = 83/317 (26%), Gaps = 55/317 (17%)

Query: 39  LLKLKQDLKDPSNRLGSWVVDGDCCKWAEVVCSNLTGHVLQLSLRNPFRNDLRYATTEYE 98
            +     + D +     W       + + V   +L    L   L       +   +   +
Sbjct: 270 RMGTLLLMVDEAPLSVEWRTPDGRNRPSHVWLCDLPAASLNDQLPQHTFRVIWTGSDSQK 329

Query: 99  DYMRSMLSGNVNPSLVD-LKHLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGA----- 152
           + +                + L   +LS    +   +   L S K L+ L          
Sbjct: 330 ECVLLKDRPECWCRDSATDEQLFRCELSVE--KSTVLQSELESCKELQELEPENKWCLLT 387

Query: 153 --------EFAGIIPHQLGNLSNLRCLDLSWSEYALQVHSFSWLSGQIPNRLGNLTSLRH 204
                   +        L   S L+ +D   + Y   + S      +          +R 
Sbjct: 388 IILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKF--LLENSVLKMEYADVRV 445

Query: 205 LDLSANKFNSTTAGWLSKFNHLEFLSLSSNGLQGTISSIGLENLTSIKTIDLSLNFELGG 264
           L L+      T    L +   +  L LS N L        L  L  ++ +  S N     
Sbjct: 446 LHLAHKDL--TVLCHLEQLLLVTHLDLSHNRL--RALPPALAALRCLEVLQASDN----- 496

Query: 265 PIPTSFVRLCELTSIDVSDVKLSQDLSQVLDILSACGASALESLVFSSSQISGHLT-SQL 323
                   L  +  +      L +                L+ L+  ++++        L
Sbjct: 497 -------ALENVDGVA----NLPR----------------LQELLLCNNRLQQSAAIQPL 529

Query: 324 GQFKSLRTLSLDDNCIS 340
                L  L+L  N + 
Sbjct: 530 VSCPRLVLLNLQGNSLC 546

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 56.7 bits (136), Expect = 2e-08
 Identities = 36/190 (18%), Positives = 67/190 (35%), Gaps = 20/190 (10%)

Query: 515 LILILRSNKFDGFLPIQLCRLTSLQILDVANNSLSGTMPGCVNNFSAMATIDSSHQSNAM 574
           +IL++R+     +    L   ++L+ +D    +    +                   N++
Sbjct: 388 IILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSK------------FLLENSV 435

Query: 575 SYFEVTAYDCEVLEDASIVMKGSMVEYNSILNLVRIIDVSKNNFSGEIPMELTYLRGLQS 634
              E        L    +    +++ +   L LV  +D+S N     +P  L  LR L+ 
Sbjct: 436 LKMEYADVRVLHLAHKDL----TVLCHLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEV 490

Query: 635 LNLSHNIFTGQIPENIGNLISIESLDFSTNQLSS-KISQSMSSLSFLNHLNVSNNLLTGK 693
           L  S N     +   + NL  ++ L    N+L      Q + S   L  LN+  N L  +
Sbjct: 491 LQASDNALE-NVD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE 548

Query: 694 IPSSTQLQSF 703
                +L   
Sbjct: 549 EGIQERLAEM 558

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 42.8 bits (100), Expect = 4e-04
 Identities = 16/65 (24%), Positives = 23/65 (35%), Gaps = 3/65 (4%)

Query: 111 PSLVDLKHLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSG---AEFAGIIPHQLGNLSN 167
             + +L  L  L L  N  Q     + L S   L  LNL G    +  GI       L +
Sbjct: 502 DGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPS 561

Query: 168 LRCLD 172
           +  + 
Sbjct: 562 VSSIL 566

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 69.6 bits (171), Expect = 4e-13
 Identities = 52/223 (23%), Positives = 83/223 (37%), Gaps = 28/223 (12%)

Query: 200 TSLRHLDLSANKFNSTTAGWLSKFNHLEFLSLSSNGLQGTISSIGLENLTSIKTIDLSLN 259
            S ++LDLS N      +     F  L+ L LS   +Q TI     ++L+ + T+ L+ N
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGN 86

Query: 260 FELGGPIPTSFVRLCELTSIDVSDVKLSQDLSQVLDILSACGASALESLVFSSSQIS--- 316
             +      +F  L  L  +   +  L+   +  +  L       L+ L  + + I    
Sbjct: 87  -PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHL-----KTLKELNVAHNLIQSFK 140

Query: 317 -----GHLTSQLGQFKSLRTLSLDDNCISGPLPPALGDLSSLT----RLDLSRNMLNGSI 367
                 +LT       +L  L L  N I       L  L  +      LDLS N +N  I
Sbjct: 141 LPEYFSNLT-------NLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FI 192

Query: 368 PLSLGKISHLEYLDLSNNKMNGTLSEIHFVNLTKLTWFSASGN 410
                K   L+ L L  N++  ++ +  F  LT L       N
Sbjct: 193 QPGAFKEIRLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 69.2 bits (170), Expect = 4e-13
 Identities = 48/223 (21%), Positives = 88/223 (39%), Gaps = 21/223 (9%)

Query: 143 NLRYLNLSGAEFAGIIPHQLGNLSNLRCLDLSWSE-YALQVHSFSWLSGQIPNRLGNLTS 201
           + + L+LS      +  +   +   L+ LDLS  E   ++  ++            +L+ 
Sbjct: 29  STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQ-----------SLSH 77

Query: 202 LRHLDLSANKFNSTTAGWLSKFNHLEFLSLSSNGLQGTISSIGLENLTSIKTIDLSLNFE 261
           L  L L+ N   S   G  S  + L+ L      L  ++ +  + +L ++K ++++ N  
Sbjct: 78  LSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLI 136

Query: 262 LGGPIPTSFVRLCELTSIDVSDVKLSQDLSQVLDILSACGASALESLVFSSSQISGHLTS 321
               +P  F  L  L  +D+S  K+       L +L       +  L  S       +  
Sbjct: 137 QSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVL-----HQMPLLNLSLDLSLNPMNF 191

Query: 322 -QLGQFK--SLRTLSLDDNCISGPLPPALGDLSSLTRLDLSRN 361
            Q G FK   L+ L+LD N +          L+SL ++ L  N
Sbjct: 192 IQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 59.2 bits (144), Expect = 9e-10
 Identities = 52/247 (21%), Positives = 82/247 (33%), Gaps = 53/247 (21%)

Query: 328 SLRTLSLDDNCISGPLPPALGDLSSLTRLDLSRNMLNGSIPLSL-GKISHLEYLDLSNNK 386
           S + L L  N +      +      L  LDLSR  +  +I       +SHL  L L+ N 
Sbjct: 29  STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNP 87

Query: 387 MNGTLSEIH---FVNLTKLTWFSASGNSLILQVNPNWVPPFQLKTLLLMSCHLGPQFPSW 443
               +  +    F  L+ L    A                  L +L          FP  
Sbjct: 88  ----IQSLALGAFSGLSSLQKLVAVET--------------NLASL--------ENFP-- 119

Query: 444 LHSQKNLSVLDISNARISDTIPRWFWNSIFQLSGIIPESFKNFSNLEVLNLGDNEFVGKI 503
           +   K L  L++++  I               S  +PE F N +NLE L+L  N+    I
Sbjct: 120 IGHLKTLKELNVAHNLIQ--------------SFKLPEYFSNLTNLEHLDLSSNKIQ-SI 164

Query: 504 PTWMGEGFTSL----LILILRSNKFDGFLPIQLCRLTSLQILDVANNSLSGTMPGCVNNF 559
                     +    L L L  N  + F+     +   L+ L +  N L     G  +  
Sbjct: 165 YCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLKELALDTNQLKSVPDGIFDRL 223

Query: 560 SAMATID 566
           +++  I 
Sbjct: 224 TSLQKIW 230

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 51.9 bits (125), Expect = 3e-07
 Identities = 42/171 (24%), Positives = 67/171 (39%), Gaps = 36/171 (21%)

Query: 115 DLKHLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRCLDLS 174
            L HL+ L L+GN  Q +        L +L+ L       A +    +G+L  L+ L+++
Sbjct: 74  SLSHLSTLILTGNPIQSLA-LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVA 132

Query: 175 WSEYALQVHSFSWLSGQIPNRLGNLTSLRHLDLSANKFNSTTAGWLSKFNHLEF----LS 230
                  + SF     ++P    NLT+L HLDLS+NK  S     L   + +      L 
Sbjct: 133 H----NLIQSF-----KLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLD 183

Query: 231 LSSNGLQG----------------------TISSIGLENLTSIKTIDLSLN 259
           LS N +                        ++     + LTS++ I L  N
Sbjct: 184 LSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 46.1 bits (110), Expect = 2e-05
 Identities = 50/228 (21%), Positives = 81/228 (35%), Gaps = 45/228 (19%)

Query: 474 QLSGIIPESFKNFSNLEVLNLGDNEFVGKIPTWMGEGFTSLLILILRSNK--------FD 525
            L  +   SF +F  L+VL+L   E +  I     +  + L  LIL  N         F 
Sbjct: 39  PLRHLGSYSFFSFPELQVLDLSRCE-IQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFS 97

Query: 526 GFLPIQLCRLTSLQILDVANNSLSGTMPGCVNNFSAMATIDSSHQSNAMSYFEVTAY--D 583
           G        L+SLQ L     +L+      + +   +  ++ +H  N +  F++  Y  +
Sbjct: 98  G--------LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAH--NLIQSFKLPEYFSN 147

Query: 584 CEVLEDASIVMKGSMVEYNSILNLV--RIIDVSKNNFSGEIPMELTYLRGLQ-SLNLSHN 640
              LE                L+L   +I  +   +        L  +  L  SL+LS N
Sbjct: 148 LTNLEH---------------LDLSSNKIQSIYCTDLRV-----LHQMPLLNLSLDLSLN 187

Query: 641 IFTGQIPENIGNLISIESLDFSTNQLSSKISQSMSSLSFLNHLNVSNN 688
                I       I ++ L   TNQL S        L+ L  + +  N
Sbjct: 188 PMN-FIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 68.3 bits (167), Expect = 2e-12
 Identities = 36/144 (25%), Positives = 50/144 (34%), Gaps = 12/144 (8%)

Query: 118 HLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRCLDLSWSE 177
           +   LDLS N+   +R       L NL  L LS      I       + NLR LDLS + 
Sbjct: 40  YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN- 98

Query: 178 YALQVHSFSWLSGQIPNRLGNLTSLRHLDLSANKFNSTTAGWLSKFNHLEFLSLSSNGLQ 237
               +H+             +L +L  L L  N               L+ L LS N + 
Sbjct: 99  ---HLHTLDEFL------FSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS 149

Query: 238 GTISSI--GLENLTSIKTIDLSLN 259
                +      L  +  +DLS N
Sbjct: 150 RFPVELIKDGNKLPKLMLLDLSSN 173

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 66.8 bits (163), Expect = 6e-12
 Identities = 58/264 (21%), Positives = 84/264 (31%), Gaps = 79/264 (29%)

Query: 200 TSLRHLDLSANKFNSTTAGW-LSKFNHLEFLSLSSNGLQGTISSIGLENLTSIKTIDLSL 258
           +    LDLS N  +   A W  ++  +L  L LS N L   ISS     + +++ +DLS 
Sbjct: 39  SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLSS 97

Query: 259 NFELGGPIPTSFVRLCELTSIDVSDVKLSQDLSQVLDILSACGASALESLVFSSSQISGH 318
           N                L ++D                           L          
Sbjct: 98  N---------------HLHTLD---------------------EFLFSDLQ--------- 112

Query: 319 LTSQLGQFKSLRTLSLDDNCISGPLPPALGDLSSLTRLDLSRNMLNGSIP----LSLGKI 374
                    +L  L L +N I      A  D++ L +L LS+N ++   P        K+
Sbjct: 113 ---------ALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS-RFPVELIKDGNKL 162

Query: 375 SHLEYLDLSNNKMNGTLSEIHFVNLTKLTWFSASGNSLILQVNPNWVPPFQLKTLLLMSC 434
             L  LDLS+NK+   L       L          N L L  NP           L   C
Sbjct: 163 PKLMLLDLSSNKLK-KLPLTDLQKLPAWVK-----NGLYLHNNP-----------LECDC 205

Query: 435 HLGPQFPSWLHSQKNLSVLDISNA 458
            L     S    ++  SV+D    
Sbjct: 206 KLYQ-LFSHWQYRQLSSVMDFQED 228

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 62.6 bits (152), Expect = 2e-10
 Identities = 36/154 (23%), Positives = 58/154 (37%), Gaps = 17/154 (11%)

Query: 110 NPSLVDLKHLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLR 169
             +   L +L  L LS N    I   +    + NLRYL+LS      +      +L  L 
Sbjct: 57  EWTPTRLTNLHSLLLSHNHLNFIS-SEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALE 115

Query: 170 CLDLSWSE-YALQVHSFSWLSGQIPNRLGNLTSLRHLDLSANKFNSTTAG---WLSKFNH 225
            L L  +    +  ++F            ++  L+ L LS N+ +          +K   
Sbjct: 116 VLLLYNNHIVVVDRNAFE-----------DMAQLQKLYLSQNQISRFPVELIKDGNKLPK 164

Query: 226 LEFLSLSSNGLQGTISSIGLENLTSIKTIDLSLN 259
           L  L LSSN L+  +    L+ L +     L L+
Sbjct: 165 LMLLDLSSNKLK-KLPLTDLQKLPAWVKNGLYLH 197

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 56.8 bits (137), Expect = 1e-08
 Identities = 28/122 (22%), Positives = 45/122 (36%), Gaps = 10/122 (8%)

Query: 115 DLKHLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRCLDLS 174
            + +L +LDLS N    +        L+ L  L L       +  +   +++ L+ L LS
Sbjct: 86  PVPNLRYLDLSSNHLHTLD-EFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLS 144

Query: 175 WSEYALQVHSFSWLSGQIPNRLGNLTSLRHLDLSANKFNSTTAGWLSKFNHL--EFLSLS 232
            ++        S    ++      L  L  LDLS+NK        L K        L L 
Sbjct: 145 QNQ-------ISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLH 197

Query: 233 SN 234
           +N
Sbjct: 198 NN 199

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 49.1 bits (117), Expect = 3e-06
 Identities = 48/224 (21%), Positives = 75/224 (33%), Gaps = 46/224 (20%)

Query: 352 SLTRLDLSRNMLNGSIPLSLGKISHLEYLDLSNNKMNGTLSEIHFVNLTKLTWFSASGNS 411
           +   L  S+  L  ++P SL   S+   LDLS+N ++   +E     LT L     S N 
Sbjct: 19  ASNILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNH 75

Query: 412 LILQVNPNWVPPFQLKTLLLMSCHLGPQFPSWLHSQKNLSVLDISNARISDTIPRWFWNS 471
           L      N++       +                   NL  LD+S+            N 
Sbjct: 76  L------NFISSEAFVPV------------------PNLRYLDLSS------------N- 98

Query: 472 IFQLSGIIPESFKNFSNLEVLNLGDNEFVGKIPTWMGEGFTSLLILILRSNKFDGFLP-- 529
              L  +    F +   LEVL L +N  +  +     E    L  L L  N+   F    
Sbjct: 99  --HLHTLDEFLFSDLQALEVLLLYNNH-IVVVDRNAFEDMAQLQKLYLSQNQISRFPVEL 155

Query: 530 -IQLCRLTSLQILDVANNSLSGTMPGCVNNFSAMATIDSSHQSN 572
                +L  L +LD+++N L       +    A         +N
Sbjct: 156 IKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNN 199

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 65.8 bits (161), Expect = 4e-12
 Identities = 33/209 (15%), Positives = 66/209 (31%), Gaps = 10/209 (4%)

Query: 199 LTSLRHLDLSANKFNSTTAGWLSKFNHLEFLSLSSNGLQGTISSIGLENLTSIKTIDLSL 258
             S + L L      +  +   S   ++  + +S +     + S    NL+ +  I++  
Sbjct: 30  PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRN 89

Query: 259 NFELGGPIPTSFVRLCELTSIDVSDVKLSQDLSQVLDILSACGASALESLVFSSSQISGH 318
              L    P +   L  L  + + +      L    D+           L  + +     
Sbjct: 90  TRNLTYIDPDALKELPLLKFLGIFNTG----LKMFPDLTKVYSTDIFFILEITDNPYMTS 145

Query: 319 LTSQL--GQFKSLRTLSLDDNCISGPLPPALGDLSSLTRLDLSRNMLNGSIPLSL--GKI 374
           +      G      TL L +N  +  +     + + L  + L++N     I      G  
Sbjct: 146 IPVNAFQGLCNETLTLKLYNNGFTS-VQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVY 204

Query: 375 SHLEYLDLSNNKMNGTLSEIHFVNLTKLT 403
           S    LD+S   +   L      +L +L 
Sbjct: 205 SGPSLLDVSQTSVT-ALPSKGLEHLKELI 232

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 58.9 bits (143), Expect = 1e-09
 Identities = 39/229 (17%), Positives = 82/229 (35%), Gaps = 49/229 (21%)

Query: 328 SLRTLSLDDNCISGPLPPALGDLSSLTRLDLSRNMLNGSIPL-SLGKISHLEYLDLSNNK 386
           S +TL L +  +      A  +L +++R+ +S ++    +   S   +S + ++++ N +
Sbjct: 32  STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTR 91

Query: 387 MNGTLSEIH---FVNLTKLTWFSASGNSLILQVNPNWVPPFQLKTLLLMSCHLGPQFPSW 443
               L+ I       L  L +                     LK          P   + 
Sbjct: 92  ---NLTYIDPDALKELPLLKFLGIFNT--------------GLKMF--------PDL-TK 125

Query: 444 LHSQKNLSVLDISNARISDTIPRWFWNSIFQLSGIIPESFKNFSN-LEVLNLGDNEFVGK 502
           ++S     +L+I++            N    ++ I   +F+   N    L L +N F   
Sbjct: 126 VYSTDIFFILEITD------------NP--YMTSIPVNAFQGLCNETLTLKLYNNGF-TS 170

Query: 503 IPTWMGEGFTSLLILILRSNKFDGFLPIQLCR--LTSLQILDVANNSLS 549
           +  +   G T L  + L  NK+   +         +   +LDV+  S++
Sbjct: 171 VQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT 218

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 54.6 bits (132), Expect = 2e-08
 Identities = 27/225 (12%), Positives = 73/225 (32%), Gaps = 24/225 (10%)

Query: 303 SALESLVFSSSQISGHLTSQLGQFKSLRTLSLDDNCISGPLPP-ALGDLSSLTRLDLSRN 361
            + ++L    + +    +       ++  + +  +     L   +  +LS +T +++   
Sbjct: 31  PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNT 90

Query: 362 MLNGSIPLS-LGKISHLEYLDLSNNKMNGTLSEIHFVNLTKLTWFSASGNSLILQVNPNW 420
                I    L ++  L++L + N  +          +         + N  +  +  N 
Sbjct: 91  RNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNA 150

Query: 421 VP--PFQLKTLLLMSCHLGPQFPSWLHSQKNLSVLDISNARISDTIPRWFWNSIFQLSGI 478
                 +  TL L +         +  +   L  + ++  +               L+ I
Sbjct: 151 FQGLCNETLTLKLYNNGF-TSVQGYAFNGTKLDAVYLNKNK--------------YLTVI 195

Query: 479 IPESFKN-FSNLEVLNLGDNEFVGKIPTWMGEGFTSLLILILRSN 522
             ++F   +S   +L++        +P+   +G   L  LI R+ 
Sbjct: 196 DKDAFGGVYSGPSLLDVSQTSVT-ALPS---KGLEHLKELIARNT 236

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 48.1 bits (115), Expect = 4e-06
 Identities = 30/214 (14%), Positives = 70/214 (32%), Gaps = 23/214 (10%)

Query: 474 QLSGIIPESFKNFSNLEVLNLGDNEFVGKIPTWMGEGFTSLLILILRSNKFDGFLPIQLC 533
            L  I   +F N  N+  + +  +  + ++ +      + +  + +R+ +   ++     
Sbjct: 42  HLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDAL 101

Query: 534 R-LTSLQILDVANNSLSGTMPGCVNNFSAMATIDSSHQSNAMSYFEVTAYDCEVLEDASI 592
           + L  L+ L + N  L    P     +S           N              +   + 
Sbjct: 102 KELPLLKFLGIFNTGLK-MFPDLTKVYSTDIFFILEITDNPYM---------TSIPVNAF 151

Query: 593 VMKGSMVEYNSILNLVRIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQIPENI-G 651
                      + N    + +  N F+  +         L ++ L+ N +   I ++  G
Sbjct: 152 ---------QGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFG 201

Query: 652 NLIS-IESLDFSTNQLSSKISQSMSSLSFLNHLN 684
            + S    LD S   +++  S+ +  L  L   N
Sbjct: 202 GVYSGPSLLDVSQTSVTALPSKGLEHLKELIARN 235

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 47.3 bits (113), Expect = 7e-06
 Identities = 27/181 (14%), Positives = 66/181 (36%), Gaps = 17/181 (9%)

Query: 112 SLVDLKHLTHLDLSGND-FQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQ-LGNLSNLR 169
           +  +L +++ + +S +   Q +       +L  + ++ +        I    L  L  L+
Sbjct: 50  AFSNLPNISRIYVSIDVTLQQLE-SHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLK 108

Query: 170 CLDLSWSEYALQVHSFSWLSGQIPNRLGNLTSLRHLDLSANKFNST-TAGWLSKF-NHLE 227
            L +  +     +  F  L+      + +      L+++ N + ++          N   
Sbjct: 109 FLGIFNT----GLKMFPDLTK-----VYSTDIFFILEITDNPYMTSIPVNAFQGLCNETL 159

Query: 228 FLSLSSNGLQGTISSIGLENLTSIKTIDLSLNFELGGPIPTSFVRLCE-LTSIDVSDVKL 286
            L L +NG   ++      N T +  + L+ N  L      +F  +    + +DVS   +
Sbjct: 160 TLKLYNNGFT-SVQG-YAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSV 217

Query: 287 S 287
           +
Sbjct: 218 T 218

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 41.9 bits (99), Expect = 4e-04
 Identities = 25/146 (17%), Positives = 45/146 (30%), Gaps = 16/146 (10%)

Query: 115 DLKHLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQ-LGNLSN-LRCLD 172
           +L  L  L +     +       + S      L ++   +   IP      L N    L 
Sbjct: 103 ELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLK 162

Query: 173 LSWSEYALQVHSFSWLSGQIPNRLGNLTSLRHLDLSANKF-NSTTAGWLSK-FNHLEFLS 230
           L  +       S       +     N T L  + L+ NK+            ++    L 
Sbjct: 163 LYNN----GFTS-------VQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLD 211

Query: 231 LSSNGLQGTISSIGLENLTSIKTIDL 256
           +S   +   + S GLE+L  +   + 
Sbjct: 212 VSQTSVT-ALPSKGLEHLKELIARNT 236

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 63.5 bits (155), Expect = 4e-11
 Identities = 37/280 (13%), Positives = 77/280 (27%), Gaps = 63/280 (22%)

Query: 113 LVDLKHLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRCLD 172
              L +    +L       +        L  ++  N   +    +    +   +NL+ L 
Sbjct: 15  DPGLANAVKQNLGKQ---SVTDLVSQKELSGVQNFNGDNSNIQSLAG--MQFFTNLKELH 69

Query: 173 LSWSEYALQVHSFSWLSGQIPNRLGNLTSLRHLDLSANKFNSTTAGWLSKFNHLEFLSLS 232
           LS +    Q+   S L         +LT L  L ++ N+  +           L  L L 
Sbjct: 70  LSHN----QISDLSPLK--------DLTKLEELSVNRNRLKNLNGI---PSACLSRLFLD 114

Query: 233 SNGLQGTISSI-GLENLTSIKTIDLSLNFELGGPIPTSFVRLCELTSIDVSDVKLSQDLS 291
           +N     +     L +L +++ + +  N                                
Sbjct: 115 NNE----LRDTDSLIHLKNLEILSIRNN-------------------------------- 138

Query: 292 QVLDILSACGASALESLVFSSSQISGHLTSQLGQFKSLRTLSLDDNCISGPLPPALGDLS 351
           ++  I+     S LE L    ++I+      L + K +  + L            +    
Sbjct: 139 KLKSIVMLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCV---NEPVKYQP 193

Query: 352 SLTRLDLSRNMLNGSI-PLSLGKISHLEYLDLSNNKMNGT 390
            L   +  ++     I P  +          +       T
Sbjct: 194 ELYITNTVKDPDGRWISPYYISNGGSYVDGCVLWELPVYT 233

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 62.0 bits (151), Expect = 1e-10
 Identities = 33/163 (20%), Positives = 67/163 (41%), Gaps = 29/163 (17%)

Query: 111 PSLVDLKHLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRC 170
            S  +L  + + +   ++ Q +     +    NL+ L+LS  + + + P  L +L+ L  
Sbjct: 35  VSQKELSGVQNFNGDNSNIQSL---AGMQFFTNLKELHLSHNQISDLSP--LKDLTKLEE 89

Query: 171 LDLSWSEYALQVHSFSWLSG-----------QIPN--RLGNLTSLRHLDLSANKFNSTTA 217
           L ++ +    ++ + + +             ++ +   L +L +L  L +  NK  S   
Sbjct: 90  LSVNRN----RLKNLNGIPSACLSRLFLDNNELRDTDSLIHLKNLEILSIRNNKLKSIVM 145

Query: 218 GWLSKFNHLEFLSLSSNGLQGTISSI-GLENLTSIKTIDLSLN 259
             L   + LE L L  N     I++  GL  L  +  IDL+  
Sbjct: 146 --LGFLSKLEVLDLHGNE----ITNTGGLTRLKKVNWIDLTGQ 182

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 60.0 bits (146), Expect = 6e-10
 Identities = 40/205 (19%), Positives = 75/205 (36%), Gaps = 36/205 (17%)

Query: 321 SQLGQFKSLRTLSLDDNCISGPLPPALGDLSSLTRLDLSRNMLNGSIPLSLGKISHLEYL 380
                  +    +L    ++  +     +LS +   +   + +  S+   +   ++L+ L
Sbjct: 13  FPDPGLANAVKQNLGKQSVTDLVS--QKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKEL 68

Query: 381 DLSNNKMNGTLSEIHFV-NLTKLTWFSASGNSLILQVNPNWVPPFQLKTLLLMSCHLGPQ 439
            LS+N+    +S++  + +LTKL   S + N  +  +N   +P   L  L L +  L  +
Sbjct: 69  HLSHNQ----ISDLSPLKDLTKLEELSVNRNR-LKNLNG--IPSACLSRLFLDNNEL--R 119

Query: 440 FPSWLHSQKNLSVLDISNARISDTIPRWFWNSIFQLSGIIPESFKNFSNLEVLNLGDNEF 499
               L   KNL +L I N ++                          S LEVL+L  N  
Sbjct: 120 DTDSLIHLKNLEILSIRNNKLKSI-----------------VMLGFLSKLEVLDLHGN-- 160

Query: 500 VGKIPTWMG-EGFTSLLILILRSNK 523
             +I    G      +  + L   K
Sbjct: 161 --EITNTGGLTRLKKVNWIDLTGQK 183

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 52.7 bits (127), Expect = 1e-07
 Identities = 38/175 (21%), Positives = 61/175 (34%), Gaps = 23/175 (13%)

Query: 240 ISSI-GLENLTSIKTIDLSLNFELGGPIPTSFVRLCELTSIDVSDVKLSQDLSQVLDILS 298
           I+ +     L +    +L            S   L  + + +  +  +         +  
Sbjct: 9   INQVFPDPGLANAVKQNLGKQ---SVTDLVSQKELSGVQNFNGDNSNIQ-------SLAG 58

Query: 299 ACGASALESLVFSSSQISGHLTSQLGQFKSLRTLSLDDNCISGPLPPALGDLSSLTRLDL 358
               + L+ L  S +QIS    S L     L  LS++ N +           + L+RL L
Sbjct: 59  MQFFTNLKELHLSHNQISD--LSPLKDLTKLEELSVNRNRLKNLNG---IPSACLSRLFL 113

Query: 359 SRNMLNGSIPLSLGKISHLEYLDLSNNKMNGTLSEI-HFVNLTKLTWFSASGNSL 412
             N L      SL  + +LE L + NNK    L  I     L+KL      GN +
Sbjct: 114 DNNEL--RDTDSLIHLKNLEILSIRNNK----LKSIVMLGFLSKLEVLDLHGNEI 162

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 50.4 bits (121), Expect = 8e-07
 Identities = 34/204 (16%), Positives = 70/204 (34%), Gaps = 56/204 (27%)

Query: 347 LGDLSSLTRLDLSRNMLNGSIPLSLGKISHLEYLDLSNNKMNGTLSEI-HFVNLTKLTWF 405
              L++  + +L +  +   +     ++S ++  +  N+     +  +      T L   
Sbjct: 15  DPGLANAVKQNLGKQSVTDLVSQK--ELSGVQNFNGDNSN----IQSLAGMQFFTNLKEL 68

Query: 406 SASGNSLILQVNPNWVPPFQLKTLLLMSCHLGPQFPSWLHSQKNLSVLDISNARISDTIP 465
             S N              Q+  L            S L     L  L ++  R+ +   
Sbjct: 69  HLSHN--------------QISDL------------SPLKDLTKLEELSVNRNRLKN--- 99

Query: 466 RWFWNSIFQLSGIIPESFKNFSNLEVLNLGDNEFVGKIPTWMGEGFTSLLILILRSNKFD 525
                    L+GI        + L  L L +NE +    +       +L IL +R+NK  
Sbjct: 100 ---------LNGI------PSACLSRLFLDNNE-LRDTDSL--IHLKNLEILSIRNNKLK 141

Query: 526 GFLPIQLCRLTSLQILDVANNSLS 549
             + +    L+ L++LD+  N ++
Sbjct: 142 SIVMLG--FLSKLEVLDLHGNEIT 163

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 64.3 bits (157), Expect = 4e-11
 Identities = 52/308 (16%), Positives = 105/308 (34%), Gaps = 70/308 (22%)

Query: 117 KHLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRCLDLSWS 176
             +T LDLS N                    NL       +I       +++  L+LS +
Sbjct: 22  HGVTSLDLSLN--------------------NLYSISTVELIQAFANTPASVTSLNLSGN 61

Query: 177 EYALQVHSFSWLSGQIPNRLGNLTSLRHLDLSANKFNSTTAGWLSKF-----NHLEFLSL 231
              L   +   L   +        ++  L+LS N  +  ++  L K        +  L L
Sbjct: 62  S--LGFKNSDELVQILAA---IPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDL 116

Query: 232 SSNGLQGT----ISSIGLENLTSIKTIDLSLNFELGGPIPTSFVRLCE--------LTSI 279
             N                   SI +++L  N +LG     S   L +        + S+
Sbjct: 117 GWNDFSSKSSSEFKQAFSNLPASITSLNLRGN-DLG---IKSSDELIQILAAIPANVNSL 172

Query: 280 DVSDVKLS----QDLSQVLDILSACGASALESLVFSSSQISGHLTSQLGQF-----KSLR 330
           ++    L+     +L++ L    A   +++ SL  S++ +     ++L          + 
Sbjct: 173 NLRGNNLASKNCAELAKFL----ASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVV 228

Query: 331 TLSLDDNCISGP----LPPALGDLSSLTRLDLSRNMLNG-------SIPLSLGKISHLEY 379
           +L+L  NC+ GP    L      L  L  + L  +++         ++  +   I  +  
Sbjct: 229 SLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIIL 288

Query: 380 LDLSNNKM 387
           +D +  ++
Sbjct: 289 VDKNGKEI 296

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 61.3 bits (149), Expect = 5e-10
 Identities = 50/278 (17%), Positives = 92/278 (33%), Gaps = 48/278 (17%)

Query: 146 YLNLSGAEFAGIIPHQLGNLSNLRCLDLSWSEYALQVHSFSWLSGQIPNRLGNLTSLRHL 205
              L+    +  +         +  LDLS +   L   S   L     N      S+  L
Sbjct: 2   NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNN--LYSISTVELIQAFAN---TPASVTSL 56

Query: 206 DLSANKFNSTTAGWLSKF-----NHLEFLSLSSNGLQGT----ISSIGLENLTSIKTIDL 256
           +LS N      +  L +       ++  L+LS N L       +         +I  +DL
Sbjct: 57  NLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDL 116

Query: 257 SLNFELGGPIPTSFVRLCE--------LTSIDVSDVKLS----QDLSQVLDILSACGASA 304
             N +       S     +        +TS+++    L      +L Q+L    A   + 
Sbjct: 117 GWN-DFS---SKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQIL----AAIPAN 168

Query: 305 LESLVFSSSQIS----GHLTSQLGQF-KSLRTLSLDDNCISGPLPPALGDL-----SSLT 354
           + SL    + ++      L   L     S+ +L L  N +       L  +     + + 
Sbjct: 169 VNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVV 228

Query: 355 RLDLSRNMLNGS----IPLSLGKISHLEYLDLSNNKMN 388
            L+L  N L+G     + L    + HL+ + L  + + 
Sbjct: 229 SLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVK 266

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 55.5 bits (134), Expect = 3e-08
 Identities = 52/332 (15%), Positives = 93/332 (28%), Gaps = 81/332 (24%)

Query: 196 LGNLTSLRHLDLSANKFNSTTAGWLSK-----FNHLEFLSLSSNGLQGT----ISSIGLE 246
                 +  LDLS N   S +   L +        +  L+LS N L       +  I   
Sbjct: 18  TSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAA 77

Query: 247 NLTSIKTIDLSLNFELGGPIPTSFVRLCELTSIDVSDVKLSQDLSQVLDILSACGASALE 306
              ++ +++LS N                   +          L + L    A     + 
Sbjct: 78  IPANVTSLNLSGN------------------FLSYKSSDE---LVKTL----AAIPFTIT 112

Query: 307 SLVFSSSQISG----HLTSQLGQF-KSLRTLSLDDNCISGPLPPALGDL-----SSLTRL 356
            L    +  S                S+ +L+L  N +       L  +     +++  L
Sbjct: 113 VLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSL 172

Query: 357 DLSRNMLNGSIPLSLGKI-----SHLEYLDLSNNKMNGTLSEIHFVNLTKLTWFSASGNS 411
           +L  N L       L K      + +  LDLS N                L   S +  +
Sbjct: 173 NLRGNNLASKNCAELAKFLASIPASVTSLDLSANL---------------LGLKSYAELA 217

Query: 412 LILQVNPNWVPPFQLKTLLLMSCHLGPQ----FPSWLHSQKNLSVLDISNARISDTIPRW 467
            I    PN      + +L L    L             S K+L  + +    + +     
Sbjct: 218 YIFSSIPN-----HVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKE- 271

Query: 468 FWNSIFQLSGIIPESFKNFSNLEVLNLGDNEF 499
                 Q   +   +F N   + +++    E 
Sbjct: 272 ------QCKALG-AAFPNIQKIILVDKNGKEI 296

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 49.7 bits (119), Expect = 2e-06
 Identities = 42/258 (16%), Positives = 83/258 (32%), Gaps = 48/258 (18%)

Query: 328 SLRTLSLDDNCISGPLPPALGDL-----SSLTRLDLSRNMLNGSIPLSLGKI-----SHL 377
           S+ +L+L  N +       L  +     +++T L+LS N L+      L K        +
Sbjct: 52  SVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTI 111

Query: 378 EYLDLSNNKMNGT----LSEIHFVNLTKLTWFSASGNSL-------ILQVNPNWVPPFQL 426
             LDL  N  +        +        +T  +  GN L       ++Q+      P  +
Sbjct: 112 TVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAA--IPANV 169

Query: 427 KTLLLMSCHLGPQFPSWL-----HSQKNLSVLDISNARISDTIPRWFWNSIFQLSGIIPE 481
            +L L   +L  +  + L         +++ LD+S   +          S  +L+ I   
Sbjct: 170 NSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLK-------SYAELAYIFS- 221

Query: 482 SFKNFSNLEVLNLGDNEFVGKIPTWMGEGF---TSLLILILRSNKFDGFLPIQ------- 531
                +++  LNL  N   G     +         L  + L  +        Q       
Sbjct: 222 --SIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAA 279

Query: 532 LCRLTSLQILDVANNSLS 549
              +  + ++D     + 
Sbjct: 280 FPNIQKIILVDKNGKEIH 297

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 42.8 bits (101), Expect = 3e-04
 Identities = 64/352 (18%), Positives = 114/352 (32%), Gaps = 82/352 (23%)

Query: 375 SHLEYLDLSNNKMNGT----LSEIHFVNLTKLTWFSASGNSL----------ILQVNPNW 420
             +  LDLS N +       L +        +T  + SGNSL          IL   P  
Sbjct: 22  HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPA- 80

Query: 421 VPPFQLKTLLLMSCHLGPQFPSWL-----HSQKNLSVLDISNARISDTIPRWFWNSIFQL 475
                + +L L    L  +    L          ++VLD+     S         S  + 
Sbjct: 81  ----NVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSK-------SSSEF 129

Query: 476 SGIIPESFKNFSNLEVLNLGDNEFVGKIPTWMGEGFTSLLILILRSNKFDGFLPIQLCRL 535
                      +++  LNL  N+         G   +  LI IL +              
Sbjct: 130 KQAFS---NLPASITSLNLRGNDL--------GIKSSDELIQILAAIP------------ 166

Query: 536 TSLQILDVANNSLSGTMPGCVNNFSAMATIDSSHQSNAMSYFEVTAYDCEVLEDASIVMK 595
            ++  L++  N+L+     C      +A+I +S  S  +S   +       L        
Sbjct: 167 ANVNSLNLRGNNLASK--NCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYI----- 219

Query: 596 GSMVEYNSILNLVRIIDVSKNNFSGE----IPMELTYLRGLQSLNLSHNIFTGQIPEN-- 649
                ++SI N V  +++  N   G     + +    L+ LQ++ L ++I      E   
Sbjct: 220 -----FSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCK 274

Query: 650 -----IGNLISIESLDFSTNQLS----SKISQSMSSLSF-LNHLNVSNNLLT 691
                  N+  I  +D +  ++       IS  +  LS   +  ++ N  L 
Sbjct: 275 ALGAAFPNIQKIILVDKNGKEIHPSHSIPISNLIRELSGKADVPSLLNQCLI 326

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 62.0 bits (151), Expect = 2e-10
 Identities = 48/194 (24%), Positives = 68/194 (35%), Gaps = 27/194 (13%)

Query: 200 TSLRHLDLSANKFNSTTAGWLSKFNHLEFLSLSSNGLQGTISSIGLENLTSIKTIDLSLN 259
                L LS N   + +   L  +  L  L+L    L        L  L    T+DLS N
Sbjct: 31  KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLG---TLDLSHN 87

Query: 260 FELGGPIPTSFVRLCELTSIDVSDVKLSQDLSQVLDILSACGASALESLVFSSSQIS--- 316
            +L   +P     L  LT +DVS  +L+      L  L       L+ L    +++    
Sbjct: 88  -QLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGL-----GELQELYLKGNELKTLP 140

Query: 317 ----GHLTSQLGQFKSLRTLSLDDNCISGPLPP-ALGDLSSLTRLDLSRNMLNGSIPLSL 371
                           L  LSL +N ++  LP   L  L +L  L L  N L  +IP   
Sbjct: 141 PGLLTPTP-------KLEKLSLANNNLTE-LPAGLLNGLENLDTLLLQENSLY-TIPKGF 191

Query: 372 GKISHLEYLDLSNN 385
                L +  L  N
Sbjct: 192 FGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 58.2 bits (141), Expect = 3e-09
 Identities = 39/150 (26%), Positives = 53/150 (35%), Gaps = 16/150 (10%)

Query: 111 PSLVDLKHLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRC 170
                L  L  LDLS N  Q   +P    +L  L  L++S      +    L  L  L+ 
Sbjct: 71  QVDGTLPVLGTLDLSHNQLQ--SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQE 128

Query: 171 LDLSWSEYALQVHSFSWLSGQIPNRL-GNLTSLRHLDLSANKFNSTTAGWLSKFNHLEFL 229
           L L  +E  L+          +P  L      L  L L+ N      AG L+   +L+ L
Sbjct: 129 LYLKGNE--LKT---------LPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTL 177

Query: 230 SLSSNGLQGTISSIGLENLTSIKTIDLSLN 259
            L  N L  TI   G      +    L  N
Sbjct: 178 LLQENSLY-TIPK-GFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 57.0 bits (138), Expect = 6e-09
 Identities = 50/243 (20%), Positives = 71/243 (29%), Gaps = 70/243 (28%)

Query: 119 LTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRCLDLSWSEY 178
            T L LS N          L     L  LNL  AE   +     G L  L  LDLS ++ 
Sbjct: 33  TTILHLSENLLYTFS-LATLMPYTRLTQLNLDRAELTKL--QVDGTLPVLGTLDLSHNQL 89

Query: 179 ALQVHSFSWLSGQIPNRLGNLTSLRHLDLSANKFNSTTAGWLSKFNHLEFLSLSSNGLQG 238
                        +P     L +L  LD+S N+  S   G L     L+ L L  N L+ 
Sbjct: 90  Q-----------SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK- 137

Query: 239 TISSIGLENLTSIKTIDLSLNFELGGPIPTSFVRLCELTSIDVSDVKLSQDLSQVLDILS 298
           T+    L     ++ + L+ N                LT +                   
Sbjct: 138 TLPPGLLTPTPKLEKLSLANN---------------NLTELPAG---------------- 166

Query: 299 ACGASALESLVFSSSQISGHLTSQLGQFKSLRTLSLDDNCISGPLPPALGDLSSLTRLDL 358
                     + +       L        +L TL L +N +   +P        L    L
Sbjct: 167 ----------LLN------GLE-------NLDTLLLQENSLYT-IPKGFFGSHLLPFAFL 202

Query: 359 SRN 361
             N
Sbjct: 203 HGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 57.0 bits (138), Expect = 7e-09
 Identities = 44/208 (21%), Positives = 70/208 (33%), Gaps = 39/208 (18%)

Query: 350 LSSLTRLDLSRNMLNGSIPLSLGKISHLEYLDLSNNKMNGTLSEIHFVNLTKLTWFSASG 409
           ++S   ++  +  L  ++P  L        L LS N +  T S    +  T+LT  +   
Sbjct: 9   VASHLEVNCDKRNL-TALPPDLP--KDTTILHLSENLL-YTFSLATLMPYTRLTQLNLDR 64

Query: 410 NSLILQVNPNWVPPFQLKTLLLMSCHLGPQFPSWLHSQKNLSVLDISNARISDTIPRWFW 469
             L             L TL L    L    P    +   L+VLD+S             
Sbjct: 65  AEL--TKLQVDGTLPVLGTLDLSHNQL-QSLPLLGQTLPALTVLDVSF------------ 109

Query: 470 NSIFQLSGIIPESFKNFSNLEVLNLGDNEFVGKIPTWMGEGFTSLLILILRSNK------ 523
           N   +L+ +   + +    L+ L L  NE    +P  +      L  L L +N       
Sbjct: 110 N---RLTSLPLGALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLANNNLTELPA 165

Query: 524 --FDGFLPIQLCRLTSLQILDVANNSLS 549
              +G        L +L  L +  NSL 
Sbjct: 166 GLLNG--------LENLDTLLLQENSLY 185

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 56.3 bits (136), Expect = 1e-08
 Identities = 37/144 (25%), Positives = 62/144 (43%), Gaps = 15/144 (10%)

Query: 116 LKHLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRCLDLSW 175
              LT L+L   +   +++    G+L  L  L+LS  +    +P     L  L  LD+S+
Sbjct: 54  YTRLTQLNLDRAELTKLQV---DGTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSF 109

Query: 176 SEYALQVHSFSWLSGQIPNRLGNLTSLRHLDLSANKFNSTTAGWLSKFNHLEFLSLSSNG 235
           +    ++ S           L  L  L+ L L  N+  +   G L+    LE LSL++N 
Sbjct: 110 N----RLTSLP------LGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN 159

Query: 236 LQGTISSIGLENLTSIKTIDLSLN 259
           L   + +  L  L ++ T+ L  N
Sbjct: 160 LT-ELPAGLLNGLENLDTLLLQEN 182

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 53.6 bits (129), Expect = 8e-08
 Identities = 46/223 (20%), Positives = 73/223 (32%), Gaps = 49/223 (21%)

Query: 326 FKSLRTLSLDDNCISGPLPPALGDLSSLTRLDLSRNMLNGSIPLSLGKISHLEYLDLSNN 385
            K    L L +N +       L   + LT+L+L R  L   + +  G +  L  LDLS+N
Sbjct: 30  PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQVD-GTLPVLGTLDLSHN 87

Query: 386 KMNGTLSEIH--FVNLTKLTWFSASGNSLILQVNPNWVPPFQLKTLLLMSCHLGPQFPSW 443
           +    L  +      L  LT        L +  N       +L +L              
Sbjct: 88  Q----LQSLPLLGQTLPALTV-------LDVSFN-------RLTSL----------PLGA 119

Query: 444 LHSQKNLSVLDISNARISDTIPRWFWNSIFQLSGIIPESFKNFSNLEVLNLGDNEFVGKI 503
           L     L  L +              N   +L  + P        LE L+L +N    ++
Sbjct: 120 LRGLGELQELYLKG------------N---ELKTLPPGLLTPTPKLEKLSLANNNLT-EL 163

Query: 504 PTWMGEGFTSLLILILRSNKFDGFLPIQLCRLTSLQILDVANN 546
           P  +  G  +L  L+L+ N     +P        L    +  N
Sbjct: 164 PAGLLNGLENLDTLLLQENSLYT-IPKGFFGSHLLPFAFLHGN 205

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 60.4 bits (147), Expect = 2e-10
 Identities = 40/141 (28%), Positives = 61/141 (43%), Gaps = 14/141 (9%)

Query: 120 THLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRCLDLSWSEYA 179
           T + L  N  + I  P      K LR ++LS  + + + P     L +L  L L  +   
Sbjct: 35  TEIRLEQNTIKVIP-PGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN--- 90

Query: 180 LQVHSFSWLSGQIPNRL-GNLTSLRHLDLSANKFNSTTAGWLSKFNHLEFLSLSSNGLQG 238
            ++         +P  L   L SL+ L L+ANK N          ++L  LSL  N LQ 
Sbjct: 91  -KITE-------LPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQ- 141

Query: 239 TISSIGLENLTSIKTIDLSLN 259
           TI+      L +I+T+ L+ N
Sbjct: 142 TIAKGTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 50.8 bits (122), Expect = 3e-07
 Identities = 30/91 (32%), Positives = 41/91 (45%), Gaps = 11/91 (12%)

Query: 327 KSLRTLSLDDNCISGPLPP-ALGDLSSLTRLDLSRNMLNGSIPLSL-GKISHLEYLDLSN 384
           K LR + L +N IS  L P A   L SL  L L  N +   +P SL   +  L+ L L+ 
Sbjct: 56  KKLRRIDLSNNQISE-LAPDAFQGLRSLNSLVLYGNKIT-ELPKSLFEGLFSLQLLLLNA 113

Query: 385 NKMNGTLSEIH---FVNLTKLTWFSASGNSL 412
           NK    ++ +    F +L  L   S   N L
Sbjct: 114 NK----INCLRVDAFQDLHNLNLLSLYDNKL 140

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 46.6 bits (111), Expect = 8e-06
 Identities = 31/174 (17%), Positives = 58/174 (33%), Gaps = 48/174 (27%)

Query: 328 SLRTLSLDDNCISGPLPPALGDLSSLTRLDLSRNMLNGSIPL-SLGKISHLEYLDLSNNK 386
           ++  + L+ N I    P A      L R+DLS N ++  +   +   +  L  L L  NK
Sbjct: 33  TITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGNK 91

Query: 387 MNGTLSEIH---FVNLTKLTWFSASGNSLILQVNPNWVPPFQLKTLLLMSCHLGPQFPSW 443
               ++E+    F  L  L     + N +      N +     + L              
Sbjct: 92  ----ITELPKSLFEGLFSLQLLLLNANKI------NCLRVDAFQDL-------------- 127

Query: 444 LHSQKNLSVLDISNARISDTIPRWFWNSIFQLSGIIPESFKNFSNLEVLNLGDN 497
                NL++L + +                +L  I   +F     ++ ++L  N
Sbjct: 128 ----HNLNLLSLYDN---------------KLQTIAKGTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 43.1 bits (102), Expect = 1e-04
 Identities = 26/162 (16%), Positives = 59/162 (36%), Gaps = 31/162 (19%)

Query: 200 TSLRHLDLSANKFNSTTAGWLSKFNHLEFLSLSSNGLQGTISSIGLENLTSIKTIDLSLN 259
            ++  + L  N       G  S +  L  + LS+N +   ++    + L S+ ++ L  N
Sbjct: 32  ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGN 90

Query: 260 FELGGPIPTSFVRLCELTSIDVSDVKLSQDLSQVLDILSACGASALESLVFSSSQISGHL 319
                          ++T +             + +     G  +L+ L+ ++++I+   
Sbjct: 91  ---------------KITELP----------KSLFE-----GLFSLQLLLLNANKINCLR 120

Query: 320 TSQLGQFKSLRTLSLDDNCISGPLPPALGDLSSLTRLDLSRN 361
                   +L  LSL DN +          L ++  + L++N
Sbjct: 121 VDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 58.9 bits (143), Expect = 6e-10
 Identities = 28/141 (19%), Positives = 56/141 (39%), Gaps = 13/141 (9%)

Query: 120 THLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRCLDLSWSEYA 179
             L L+ N+F  +        L  LR +N S  +   I        S +  + L+ +   
Sbjct: 35  AELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN--- 91

Query: 180 LQVHSFSWLSGQIPNRL-GNLTSLRHLDLSANKFNSTTAGWLSKFNHLEFLSLSSNGLQG 238
            ++ +       + +++   L SL+ L L +N+            + +  LSL  N +  
Sbjct: 92  -RLEN-------VQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQIT- 142

Query: 239 TISSIGLENLTSIKTIDLSLN 259
           T++    + L S+ T++L  N
Sbjct: 143 TVAPGAFDTLHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 49.7 bits (119), Expect = 1e-06
 Identities = 23/121 (19%), Positives = 40/121 (33%), Gaps = 13/121 (10%)

Query: 115 DLKHLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRCLDLS 174
            L  L  ++ S N    I           +  + L+      +       L +L+ L L 
Sbjct: 55  KLPQLRKINFSNNKITDIE-EGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLR 113

Query: 175 WSE-YALQVHSFSWLSGQIPNRLGNLTSLRHLDLSANKFNSTTAGWLSKFNHLEFLSLSS 233
            +    +   SF             L+S+R L L  N+  +   G     + L  L+L +
Sbjct: 114 SNRITCVGNDSFI-----------GLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLA 162

Query: 234 N 234
           N
Sbjct: 163 N 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 48.9 bits (117), Expect = 2e-06
 Identities = 17/91 (18%), Positives = 39/91 (42%), Gaps = 11/91 (12%)

Query: 327 KSLRTLSLDDNCISGPLPP-ALGDLSSLTRLDLSRNMLNGSIPLSL-GKISHLEYLDLSN 384
             LR ++  +N I+  +   A    S +  + L+ N L  ++   +   +  L+ L L +
Sbjct: 57  PQLRKINFSNNKITD-IEEGAFEGASGVNEILLTSNRLE-NVQHKMFKGLESLKTLMLRS 114

Query: 385 NKMNGTLSEIH---FVNLTKLTWFSASGNSL 412
           N+    ++ +    F+ L+ +   S   N +
Sbjct: 115 NR----ITCVGNDSFIGLSSVRLLSLYDNQI 141

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 43.9 bits (104), Expect = 6e-05
 Identities = 27/174 (15%), Positives = 57/174 (32%), Gaps = 47/174 (27%)

Query: 328 SLRTLSLDDNCISGPLPPAL-GDLSSLTRLDLSRNMLNGSIPLSLGKISHLEYLDLSNNK 386
               L L++N  +      +   L  L +++ S N +      +    S +  + L++N+
Sbjct: 33  YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNR 92

Query: 387 MNGTLSEIH---FVNLTKLTWFSASGNSLILQVNPNWVPPFQLKTLLLMSCHLGPQFPSW 443
               L  +    F  L  L         L+L+ N       ++  +              
Sbjct: 93  ----LENVQHKMFKGLESLKT-------LMLRSN-------RITCVG----------NDS 124

Query: 444 LHSQKNLSVLDISNARISDTIPRWFWNSIFQLSGIIPESFKNFSNLEVLNLGDN 497
                ++ +L + +            N   Q++ + P +F    +L  LNL  N
Sbjct: 125 FIGLSSVRLLSLYD------------N---QITTVAPGAFDTLHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 42.7 bits (101), Expect = 2e-04
 Identities = 37/163 (22%), Positives = 59/163 (36%), Gaps = 32/163 (19%)

Query: 200 TSLRHLDLSANKFNSTTA-GWLSKFNHLEFLSLSSNGLQGTISSIGLENLTSIKTIDLSL 258
                L L+ N+F    A G   K   L  ++ S+N +   I     E  + +  I L+ 
Sbjct: 32  QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT-DIEEGAFEGASGVNEILLTS 90

Query: 259 NFELGGPIPTSFVRLCELTSIDVSDVKLSQDLSQVLDILSACGASALESLVFSSSQISGH 318
           N  L       F  L  L ++ +   +++                 + +  F        
Sbjct: 91  N-RLENVQHKMFKGLESLKTLMLRSNRIT----------------CVGNDSFI------G 127

Query: 319 LTSQLGQFKSLRTLSLDDNCISGPLPPALGDLSSLTRLDLSRN 361
           L+S       +R LSL DN I+   P A   L SL+ L+L  N
Sbjct: 128 LSS-------VRLLSLYDNQITTVAPGAFDTLHSLSTLNLLAN 163

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 58.0 bits (140), Expect = 8e-09
 Identities = 58/313 (18%), Positives = 98/313 (31%), Gaps = 64/313 (20%)

Query: 118 HLTHLDLSG--------------NDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLG 163
            +  ++L G                +    I     S   L  + L            + 
Sbjct: 67  KVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIA 126

Query: 164 -NLSNLRCLDLSWSEYALQVHSFSWLSGQIPNRLGNLTSLRHLDLSANKFNSTTAGWLSK 222
            +  N + L LS          FS     +        +L+ LDL  +  +  +  WLS 
Sbjct: 127 KSFKNFKVLVLSS------CEGFSTDG--LAAIAATCRNLKELDLRESDVDDVSGHWLSH 178

Query: 223 F----NHLEFLSLSSNGLQGTISSIGLENLTSIKTIDLSLNFELGGPIPTSFVRLCELTS 278
           F      L  L++S   L   +S   LE L +                     R   L S
Sbjct: 179 FPDTYTSLVSLNIS--CLASEVSFSALERLVT---------------------RCPNLKS 215

Query: 279 IDVSDVKLSQDLSQVLDILSACGASALESLVFSS------SQISGHLTSQLGQFKSLRTL 332
           + ++     + L+ +L       A  LE L            +   L+  L   K LR L
Sbjct: 216 LKLNRAVPLEKLATLLQ-----RAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCL 270

Query: 333 SLDDNCISGPLPPALGDLSSLTRLDLSR-NMLNGSIPLSLGKISHLEYLDLSNNKMNGTL 391
           S   + +   LP      S LT L+LS   + +  +   L +   L+ L + +   +  L
Sbjct: 271 SGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGL 330

Query: 392 SEI--HFVNLTKL 402
             +     +L +L
Sbjct: 331 EVLASTCKDLREL 343

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 51.1 bits (122), Expect = 1e-06
 Identities = 55/368 (14%), Positives = 106/368 (28%), Gaps = 51/368 (13%)

Query: 116 LKHLTHLDLSG--NDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRCLDL 173
              L  L++S   ++     + + +    NL+ L L+ A     +   L     L  L  
Sbjct: 183 YTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGT 242

Query: 174 SWSEYALQVHSFSWLSGQIPNRLGNLTSLRHLDLSANKFNSTTAGWLSKFNHLEFLSLSS 233
                 ++   +S LS      L     LR L    +   +      S  + L  L+LS 
Sbjct: 243 GGYTAEVRPDVYSGLS----VALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSY 298

Query: 234 NGLQGTISSIGLENLTSIKTIDLSLNFELGGPIPTSFVRLC-ELTSIDVSDVKLSQDLSQ 292
             +Q       L     ++ + +    E  G         C +L  + V   +       
Sbjct: 299 ATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGL--EVLASTCKDLRELRVFPSEPFVMEPN 356

Query: 293 -------VLDILSACGASALESLVFSSSQISG----HLTSQLGQFKSLRTLSLDDNCISG 341
                  ++ +   C    LES+++   Q++      +          R           
Sbjct: 357 VALTEQGLVSVSMGC--PKLESVLYFCRQMTNAALITIARNRPNMTRFR----------- 403

Query: 342 PLPPALGDLSSLTRLDLSRNMLNGSIPLSLGKISHLEYLDLSNNKMNGTLSEI--HFVNL 399
                L  +       L+   L+      +     L  L LS    +     I  +   +
Sbjct: 404 -----LCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGLLTDKVFEYIGTYAKKM 458

Query: 400 TKL----TWFSASGNSLILQVNPNWVPPFQLKTLLLMSCHLG-PQFPSWLHSQKNLSVLD 454
             L       S  G   +L    +      L+ L +  C  G     +     + +  L 
Sbjct: 459 EMLSVAFAGDSDLGMHHVLSGCDS------LRKLEIRDCPFGDKALLANASKLETMRSLW 512

Query: 455 ISNARISD 462
           +S+  +S 
Sbjct: 513 MSSCSVSF 520

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 56.1 bits (136), Expect = 1e-08
 Identities = 55/213 (25%), Positives = 87/213 (40%), Gaps = 36/213 (16%)

Query: 200 TSLRHLDLSANKFNSTTAGWLSKFNHLEFLSLSSNGLQGTISSIGLENLTSIKTIDLSLN 259
              + LDL +NK +S  +    +   L  L L+ N LQ T+ +   + L +++T+ ++ N
Sbjct: 37  ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDN 95

Query: 260 FELGGPIPTSFVRLCELTSIDVSDVKLSQDLSQVLDILSACGASALESLVFSSSQISGHL 319
            +L       F +L  L  + +   +L                 +L   VF S      L
Sbjct: 96  -KLQALPIGVFDQLVNLAELRLDRNQL----------------KSLPPRVFDS------L 132

Query: 320 TSQLGQFKSLRTLSLDDNCISGPLPPALGD-LSSLTRLDLSRNMLNGSIPLSL-GKISHL 377
           T        L  LSL  N +   LP  + D L+SL  L L  N L   +P     K++ L
Sbjct: 133 T-------KLTYLSLGYNELQS-LPKGVFDKLTSLKELRLYNNQLK-RVPEGAFDKLTEL 183

Query: 378 EYLDLSNNKMNGTLSEIHFVNLTKLTWFSASGN 410
           + L L NN++   + E  F +L KL       N
Sbjct: 184 KTLKLDNNQLK-RVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 53.4 bits (129), Expect = 9e-08
 Identities = 50/199 (25%), Positives = 82/199 (41%), Gaps = 28/199 (14%)

Query: 305 LESLVFSSSQISGHLTSQLGQFKSLRTLSLDDNCISGPLPP-ALGDLSSLTRLDLSRNML 363
            + L   S+++S   +    +   LR L L+DN +   LP     +L +L  L ++ N L
Sbjct: 39  TKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQT-LPAGIFKELKNLETLWVTDNKL 97

Query: 364 NGSIPLSL-GKISHLEYLDLSNNKMNGTLSEIHFVNLTKLTWFSASGNSLILQVNPNWVP 422
             ++P+ +  ++ +L  L L  N++  +L    F +LTKLT+ S   N L  Q  P  V 
Sbjct: 98  Q-ALPIGVFDQLVNLAELRLDRNQLK-SLPPRVFDSLTKLTYLSLGYNEL--QSLPKGV- 152

Query: 423 PF----QLKTLLLMSCHLGPQFPSWLHSQKNLSVLDISNARISDTIPRWFWNSIFQLSGI 478
            F     LK L L +  L             L  L + N                QL  +
Sbjct: 153 -FDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNN---------------QLKRV 196

Query: 479 IPESFKNFSNLEVLNLGDN 497
              +F +   L++L L +N
Sbjct: 197 PEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 51.5 bits (124), Expect = 3e-07
 Identities = 43/168 (25%), Positives = 67/168 (39%), Gaps = 13/168 (7%)

Query: 116 LKHLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRCLDLSW 175
           L  L  L L+ N  Q +        LKNL  L ++  +   +       L NL  L L  
Sbjct: 60  LTKLRLLYLNDNKLQTLP-AGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDR 118

Query: 176 SEYALQVHSFSWLSGQIPNRLGNLTSLRHLDLSANKFNSTTAGWLSKFNHLEFLSLSSNG 235
           +    Q+ S        P    +LT L +L L  N+  S   G   K   L+ L L +N 
Sbjct: 119 N----QLKSLP------PRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQ 168

Query: 236 LQGTISSIGLENLTSIKTIDLSLNFELGGPIPTSFVRLCELTSIDVSD 283
           L+  +     + LT +KT+ L  N +L      +F  L +L  + + +
Sbjct: 169 LK-RVPEGAFDKLTELKTLKLDNN-QLKRVPEGAFDSLEKLKMLQLQE 214

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 48.8 bits (117), Expect = 3e-06
 Identities = 34/144 (23%), Positives = 50/144 (34%), Gaps = 18/144 (12%)

Query: 119 LTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGI---IPHQLGNLSNLRCLDLSW 175
              LDL  N    +   K    L  LR L L+  +   +   I  +L NL  L       
Sbjct: 39  TKKLDLQSNKLSSLP-SKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWV----- 92

Query: 176 SEYALQVHSFSWLSGQIPNRLGNLTSLRHLDLSANKFNSTTAGWLSKFNHLEFLSLSSNG 235
                ++ +              L +L  L L  N+  S           L +LSL  N 
Sbjct: 93  --TDNKLQALP------IGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNE 144

Query: 236 LQGTISSIGLENLTSIKTIDLSLN 259
           LQ ++     + LTS+K + L  N
Sbjct: 145 LQ-SLPKGVFDKLTSLKELRLYNN 167

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 46.1 bits (110), Expect = 2e-05
 Identities = 50/243 (20%), Positives = 80/243 (32%), Gaps = 65/243 (26%)

Query: 143 NLRYLNLSGAEFAGIIPHQLGNLSNLRCLDLSWSEYALQVHSFSWLSGQIPNRLGNLTSL 202
           + + L+L   + + +       L+ LR L L+ ++  LQ      L   I   L NL   
Sbjct: 38  DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNK--LQT-----LPAGIFKELKNLE-- 88

Query: 203 RHLDLSANKFNSTTAGWLSKFNHLEFLSLSSNGLQGTISSIGLENLTSIKTIDLSLNFEL 262
             L ++ NK  +   G   +  +L  L L  N L+ ++     ++LT +  + L  N   
Sbjct: 89  -TLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLK-SLPPRVFDSLTKLTYLSLGYN--- 143

Query: 263 GGPIPTSFVRLCELTSIDVSDVKLSQDLSQVLDILSACGASALESLVFSSSQISGHLTSQ 322
                       EL S+                             VF        LT  
Sbjct: 144 ------------ELQSLPKG--------------------------VFD------KLT-- 157

Query: 323 LGQFKSLRTLSLDDNCISGPLPPALGDLSSLTRLDLSRNMLNGSIPLSLGKISHLEYLDL 382
                SL+ L L +N +      A   L+ L  L L  N L      +   +  L+ L L
Sbjct: 158 -----SLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQL 212

Query: 383 SNN 385
             N
Sbjct: 213 QEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 44.6 bits (106), Expect = 6e-05
 Identities = 49/217 (22%), Positives = 81/217 (37%), Gaps = 43/217 (19%)

Query: 351 SSLTRLDLSRNMLNGSIPLSLGKISHLEYLDLSNNKMNGTLSEIHFVNLTKLTWFSASGN 410
           +   +LDL  N L+     +  +++ L  L L++NK+  TL    F  L  L     + N
Sbjct: 37  ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDN 95

Query: 411 SLILQVNPNWVPPFQLKTLLLMSCHLGPQFPSWLHSQ-KNLSVLDISNARISDTIPRWFW 469
                         +L+ L           P  +  Q  NL+ L +              
Sbjct: 96  --------------KLQAL-----------PIGVFDQLVNLAELRLDR------------ 118

Query: 470 NSIFQLSGIIPESFKNFSNLEVLNLGDNEFVGKIPTWMGEGFTSLLILILRSNKFDGFLP 529
           N   QL  + P  F + + L  L+LG NE    +P  + +  TSL  L L +N+      
Sbjct: 119 N---QLKSLPPRVFDSLTKLTYLSLGYNELQ-SLPKGVFDKLTSLKELRLYNNQLKRVPE 174

Query: 530 IQLCRLTSLQILDVANNSLSGTMPGCVNNFSAMATID 566
               +LT L+ L + NN L     G  ++   +  + 
Sbjct: 175 GAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQ 211

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 53.1 bits (128), Expect = 2e-08
 Identities = 26/121 (21%), Positives = 45/121 (37%), Gaps = 13/121 (10%)

Query: 115 DLKHLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRCLDLS 174
               +  L L  +     ++       + L +L+        I    L  L+ L+ L+LS
Sbjct: 15  TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELS 72

Query: 175 WSEYALQVHSFSWLSGQIPNRLGNLTSLRHLDLSANKFNS-TTAGWLSKFNHLEFLSLSS 233
            +           +SG +        +L HL+LS NK    +T   L K  +L+ L L +
Sbjct: 73  DNR----------VSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFN 122

Query: 234 N 234
            
Sbjct: 123 C 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 48.5 bits (116), Expect = 7e-07
 Identities = 28/112 (25%), Positives = 50/112 (44%), Gaps = 7/112 (6%)

Query: 302 ASALESLVFSSSQIS-GHLTSQLGQFKSLRTLSLDDNCIS--GPLPPALGDLSSLTRLDL 358
            S ++ LV  +S+ + G L     +F+ L  LS  +  ++    LP     L+ L +L+L
Sbjct: 16  PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLP----KLNKLKKLEL 71

Query: 359 SRNMLNGSIPLSLGKISHLEYLDLSNNKMNGTLSEIHFVNLTKLTWFSASGN 410
           S N ++G + +   K  +L +L+LS NK+    +      L  L        
Sbjct: 72  SDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 46.6 bits (111), Expect = 3e-06
 Identities = 22/98 (22%), Positives = 33/98 (33%), Gaps = 12/98 (12%)

Query: 113 LVDLKHLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRCLD 172
             + + L  L         I     L  L  L+ L LS    +G +        NL  L+
Sbjct: 38  TDEFEELEFLSTINVGLTSIAN---LPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94

Query: 173 LSWSEYALQVHSFSWLSGQIPNRLGNLTSLRHLDLSAN 210
           LS      ++   S +       L  L +L+ LDL   
Sbjct: 95  LS----GNKIKDLSTIE-----PLKKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 41.2 bits (97), Expect = 3e-04
 Identities = 29/134 (21%), Positives = 45/134 (33%), Gaps = 24/134 (17%)

Query: 369 LSLGKISHLEYLDLSNNKMNGTLSEIHFVNLTKLTWFSASGNSL----ILQVNPNWVPPF 424
           L     S ++ L L N++ N    E       +L + S     L     L          
Sbjct: 11  LRNRTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNK----- 65

Query: 425 QLKTLLLMSCHLGPQFPSWLHSQKNLSVLDISNARISDTIPRWFWNSIFQLSGIIPESFK 484
            LK L L    +            NL+ L++S  +I D       ++I        E  K
Sbjct: 66  -LKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKD------LSTI--------EPLK 110

Query: 485 NFSNLEVLNLGDNE 498
              NL+ L+L + E
Sbjct: 111 KLENLKSLDLFNCE 124

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 40.4 bits (95), Expect = 4e-04
 Identities = 20/83 (24%), Positives = 38/83 (45%), Gaps = 3/83 (3%)

Query: 609 RIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQIPENIGNLISIESLDFSTNQLSS 668
            ++D S++N  G++         L+ L+  +   T  I  N+  L  ++ L+ S N++S 
Sbjct: 22  LVLDNSRSN-EGKLEGLTDEFEELEFLSTINVGLT-SI-ANLPKLNKLKKLELSDNRVSG 78

Query: 669 KISQSMSSLSFLNHLNVSNNLLT 691
            +         L HLN+S N + 
Sbjct: 79  GLEVLAEKCPNLTHLNLSGNKIK 101

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 56.0 bits (135), Expect = 2e-08
 Identities = 44/230 (19%), Positives = 76/230 (33%), Gaps = 19/230 (8%)

Query: 62  CCKWAEVVCSNLTGHVLQLSLRNPFRNDLRYATTEYEDYMRSMLSGNVNPSLVDLK--HL 119
           C +W  +         L L+ +N   +      ++     R   S    P         +
Sbjct: 36  CKRWYRLASDESLWQTLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRV 95

Query: 120 THLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRCLDLSWSEYA 179
            H+DLS +  +   +   L     L+ L+L G   +  I + L   SNL  L+LS     
Sbjct: 96  QHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCS-G 154

Query: 180 LQVHSFSWLSGQIPNRLGNLTSLRHLDLS-ANKFNSTTAGWLSKFN--HLEFLSLSSNGL 236
               +   L         + + L  L+LS    F               +  L+LS  G 
Sbjct: 155 FSEFALQTLL-------SSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLS--GY 205

Query: 237 QGTISSIGL----ENLTSIKTIDLSLNFELGGPIPTSFVRLCELTSIDVS 282
           +  +    L        ++  +DLS +  L       F +L  L  + +S
Sbjct: 206 RKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLS 255

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 53.1 bits (128), Expect = 4e-08
 Identities = 40/159 (25%), Positives = 68/159 (42%), Gaps = 28/159 (17%)

Query: 108 NVNPSLVDLKHLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSN 167
            ++ +L  LK   HL LS N+ + I     L  ++NLR L+L       I    L  +++
Sbjct: 39  KMDATLSTLKACKHLALSTNNIEKI---SSLSGMENLRILSLGRNLIKKI--ENLDAVAD 93

Query: 168 -LRCLDLSWSEYALQVHSFSWLSGQIPNRLGNLTSLRHLDLSANKFNSTTA-GWLSKFNH 225
            L  L +S+++        + LSG     +  L +LR L +S NK  +      L+  + 
Sbjct: 94  TLEELWISYNQ-------IASLSG-----IEKLVNLRVLYMSNNKITNWGEIDKLAALDK 141

Query: 226 LEFLSLSSNGLQGTISSIG---------LENLTSIKTID 255
           LE L L+ N L                 ++ L ++K +D
Sbjct: 142 LEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 50.8 bits (122), Expect = 3e-07
 Identities = 35/164 (21%), Positives = 58/164 (35%), Gaps = 28/164 (17%)

Query: 281 VSDVKLSQDLSQVLDILSACGASALE--SLVFSSSQISGHLTSQLGQFKSLRTLSLDDNC 338
           ++     +D  ++ +   +  A+  E   L      I   + + L   K+ + L+L  N 
Sbjct: 1   MAKATTIKDAIRIFEERKSVVATEAEKVELHGMIPPIE-KMDATLSTLKACKHLALSTNN 59

Query: 339 IS---GPLPPALGDLSSLTRLDLSRNMLNGSIPLSLGKISHLEYLDLSNNKMNGTLSEIH 395
           I          L  + +L  L L RN++   I         LE L +S N++  +LS I 
Sbjct: 60  IEKISS-----LSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIA-SLSGIE 112

Query: 396 FVNLTKLTWFSASGNSL-------ILQVNPNWVPPFQLKTLLLM 432
              L  L     S N +        L           L+ LLL 
Sbjct: 113 --KLVNLRVLYMSNNKITNWGEIDKLAALDK------LEDLLLA 148

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 47.8 bits (114), Expect = 3e-06
 Identities = 34/180 (18%), Positives = 60/180 (33%), Gaps = 53/180 (29%)

Query: 192 IPNRLGNLTSLRHLDLSANKFNSTTAGWLSKFNHLEFLSLSSNGLQGTISSI-GLENLT- 249
           +   L  L + +HL LS N     ++  LS   +L  LSL  N     I  I  L+ +  
Sbjct: 40  MDATLSTLKACKHLALSTNNIEKISS--LSGMENLRILSLGRNL----IKKIENLDAVAD 93

Query: 250 SIKTIDLSLNF--ELGGPIPTSFVRLCELTSIDVSDVKLSQDLSQVLDILSACGASALES 307
           +++ + +S N    L G       +L  L  + +S+ K++ +  ++              
Sbjct: 94  TLEELWISYNQIASLSG-----IEKLVNLRVLYMSNNKIT-NWGEI-------------- 133

Query: 308 LVFSSSQISGHLTSQLGQFKSLRTLSLDDNCISGPLPPALGD----------LSSLTRLD 357
                         +L     L  L L  N +                    L +L +LD
Sbjct: 134 -------------DKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 44.3 bits (105), Expect = 4e-05
 Identities = 15/71 (21%), Positives = 30/71 (42%), Gaps = 3/71 (4%)

Query: 621 EIPMELTYLRGLQSLNLSHNIFTGQIPENIGNLISIESLDFSTNQLSSKISQSMSSLSFL 680
           ++   L+ L+  + L LS N    +I  ++  + ++  L    N +  KI    +    L
Sbjct: 39  KMDATLSTLKACKHLALSTNNIE-KI-SSLSGMENLRILSLGRNLI-KKIENLDAVADTL 95

Query: 681 NHLNVSNNLLT 691
             L +S N + 
Sbjct: 96  EELWISYNQIA 106

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 43.1 bits (102), Expect = 1e-04
 Identities = 31/152 (20%), Positives = 55/152 (36%), Gaps = 25/152 (16%)

Query: 349 DLSSLTRLDLSRNMLNG--SIPLSLGKISHLEYLDLSNNKMNGTLSEI-HFVNLTKLTWF 405
             +   +++L   M+     +  +L  +   ++L LS N     + +I     +  L   
Sbjct: 21  VATEAEKVELH-GMIPPIEKMDATLSTLKACKHLALSTNN----IEKISSLSGMENLRIL 75

Query: 406 SASGNSLILQVNPNWVPPFQLKTLLLMSCHLGPQFPSWLHSQKNLSVLDISNARISDTIP 465
           S   N LI ++         L+ L +    +     S +    NL VL +SN +I++   
Sbjct: 76  SLGRN-LIKKIENLDAVADTLEELWISYNQI--ASLSGIEKLVNLRVLYMSNNKITN--- 129

Query: 466 RWFWNSIFQLSGIIPESFKNFSNLEVLNLGDN 497
              W  I +L             LE L L  N
Sbjct: 130 ---WGEIDKL--------AALDKLEDLLLAGN 150

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 53.8 bits (129), Expect = 2e-07
 Identities = 60/427 (14%), Positives = 117/427 (27%), Gaps = 55/427 (12%)

Query: 70  CSNLTGHVLQLSLRNPFRNDLRYATTEYEDYMRSMLSGNVNPSLVDLKHLTHLDLSGNDF 129
             NL    L+   R    N +      Y     + +S N    L  + H   + +S  D 
Sbjct: 72  FPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNN-LRQLKSV-HFRRMIVSDLDL 129

Query: 130 QGIRIPKYLGSLKNLRYLNLSGAEF---AGIIPHQLGNLSNLRCLDLSWSEYALQVHSFS 186
             +          +L  L L         G++   + +   ++ L +  S          
Sbjct: 130 DRLA----KARADDLETLKLDKCSGFTTDGLL-SIVTHCRKIKTLLMEESS--FSEKDGK 182

Query: 187 WLSGQIPNRLGNLTSLRHLDLSANKFNSTTAGWLSKF----NHLEFLSLSS-NGLQGTIS 241
           WL         + TSL  L+    +F   +   L         L  + +     L+    
Sbjct: 183 WLH----ELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGF 238

Query: 242 SIGLENLTSIKTIDLSLNFELGGPIPTSFVRLCELTSIDVSDVKLSQDLSQVLDILSACG 301
                NL       L+ +      +P  ++ L     +    +        +  +     
Sbjct: 239 FKAAANLEEFCGGSLNEDIG----MPEKYMNLVFPRKLCRLGLSYMGPNE-MPILFPFA- 292

Query: 302 ASALESLVFSS-SQISGHLTSQLGQFKSLRTLSLDDNCISGPLPPALGDL-SSLTRLDLS 359
            + +  L        +    + + +  +L  L    N I       L      L RL + 
Sbjct: 293 -AQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIE 350

Query: 360 RNMLNGSIPLSLGKIS------------HLEYLDLSNNKM-NGTLSEI--HFVNLTKLTW 404
           R      +    G +S             LEY+ +  + + N +L  I  +  NL     
Sbjct: 351 RGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRL 410

Query: 405 FSASGNSLILQVNPNWVPPF------QLKTLLLMSC--HLGPQFPSWL-HSQKNLSVLDI 455
                   I  +  +           +L+          L     S++     N+  + +
Sbjct: 411 VLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLL 470

Query: 456 SNARISD 462
                SD
Sbjct: 471 GYVGESD 477

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 42.6 bits (100), Expect = 4e-04
 Identities = 66/545 (12%), Positives = 152/545 (27%), Gaps = 94/545 (17%)

Query: 183 HSFSWLSGQIPNRLGNLTSLR--------HLDLSANKFNSTTAGWL----SKFNHLEFLS 230
             ++    ++  R  NL SL+          +L    +      W+    +    L+ + 
Sbjct: 59  LCYTATPDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVH 118

Query: 231 LSSNGLQ-GTISSIGLENLTSIKTIDLSLNFELGGPIPTSFVRLC-ELTSIDVSDVKLSQ 288
                +    +  +       ++T+ L            S V  C ++ ++ + +   S+
Sbjct: 119 FRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSE 178

Query: 289 DLSQVLDILSACGASALESLVFSSSQISG----HLTSQLGQFKSLRTLSLDDNCISGPLP 344
              + L  L A   ++LE L F  ++ +      L +     +SL ++ +  +     L 
Sbjct: 179 KDGKWLHEL-AQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVG-DFEILELV 236

Query: 345 PALGDLSSLTRLDLSRNMLNGSIPLSLGKISHLEYLDLSNNKMNGTLSEIHFVNLTKLTW 404
                 ++L          +  +P     +     L                     L++
Sbjct: 237 GFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLG-----------------LSY 279

Query: 405 FSASGNSLILQVNPNWVPPFQLKTLLLMSCHL-GPQFPSWLHSQKNLSVLDISNARISDT 463
              +   ++            ++ L L+   L      + +    NL VL+  N  I D 
Sbjct: 280 MGPNEMPILFPFAAQ------IRKLDLLYALLETEDHCTLIQKCPNLEVLETRN-VIGDR 332

Query: 464 IPRWFWNSIFQLSGIIPESFKNFSNLEVLNLGDNEFVGKIPTW-----------MGEGFT 512
                   +  L+       +    L+ L +        +              + +G  
Sbjct: 333 -------GLEVLA-------QYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQ 378

Query: 513 SLLILILRSNKF--DGFLPI--QLCRLTSLQILDVANNSLSGTMPGCVNNFSAMATIDSS 568
            L  + +  +    +    I   L  L   +++ +       T     N   ++      
Sbjct: 379 ELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREE-RITDLPLDNGVRSLLIGCKK 437

Query: 569 HQSNAMSYFEVTAYDCEVLEDASIVMKGSMVEYNSILNLVRIIDVSKNNFSGE-IPMELT 627
            +  A             L D  +   G           VR + +     S E +     
Sbjct: 438 LRRFAFYL------RQGGLTDLGLSYIGQY------SPNVRWMLLGYVGESDEGLMEFSR 485

Query: 628 YLRGLQSLNLSHNIFTGQ-IPENIGNLISIESLDFSTNQLS----SKISQSMSSLSFLNH 682
               LQ L +    F+ + I   +  L S+  L     + S      +  +    + +  
Sbjct: 486 GCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWN-IEL 544

Query: 683 LNVSN 687
           +    
Sbjct: 545 IPSRR 549

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 42.2 bits (99), Expect = 6e-04
 Identities = 29/237 (12%), Positives = 62/237 (26%), Gaps = 26/237 (10%)

Query: 116 LKHLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRCLDLSW 175
              +  LDL     +       +    NL  L          +         L+ L +  
Sbjct: 292 AAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIER 351

Query: 176 SEYALQVHSFSWLSGQIPNR-----LGNLTSLRHLDLSANKFNSTT----AGWLSKFNHL 226
                         G +  R           L ++ +  +   + +      +L      
Sbjct: 352 GA---DEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDF 408

Query: 227 EFLSLSS------NGLQGTISSIGLENLTSIKTIDLSLN-FELGGPIPTSFVRLCE-LTS 278
             + L          L   + S+ L     ++     L    L     +   +    +  
Sbjct: 409 RLVLLDREERITDLPLDNGVRSL-LIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRW 467

Query: 279 IDVSDVKLSQDLSQVLDILSACGASALESLVFSSSQISGH-LTSQLGQFKSLRTLSL 334
           + +  V  S D   +++    C    L+ L       S   + + + +  SLR L +
Sbjct: 468 MLLGYVGES-DEG-LMEFSRGC--PNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWV 520

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 50.5 bits (121), Expect = 2e-07
 Identities = 31/120 (25%), Positives = 53/120 (44%), Gaps = 16/120 (13%)

Query: 303 SALESLVFSSSQIS-GHLTSQLGQFKSLRTLSLDDNCIS--GPLPPALGDLSSLTRLDLS 359
           +A+  LV  + + + G +     +F +L  LSL +  +     LP     L  L +L+LS
Sbjct: 24  AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPK----LPKLKKLELS 79

Query: 360 RNMLNGSIPLSLGKISHLEYLDLSNNKMNGTLSEI-HFVNLTKLTWFSASGNSLILQVNP 418
            N + G + +   K+ +L +L+LS NK+   +S +     L  L        SL L    
Sbjct: 80  ENRIFGGLDMLAEKLPNLTHLNLSGNKLK-DISTLEPLKKLECLK-------SLDLFNCE 131

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 46.3 bits (110), Expect = 6e-06
 Identities = 24/98 (24%), Positives = 33/98 (33%), Gaps = 12/98 (12%)

Query: 113 LVDLKHLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRCLD 172
             +  +L  L L       +     L  L  L+ L LS     G +      L NL  L+
Sbjct: 45  TAEFVNLEFLSLINVGLISV---SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101

Query: 173 LSWSEYALQVHSFSWLSGQIPNRLGNLTSLRHLDLSAN 210
           LS      ++   S L       L  L  L+ LDL   
Sbjct: 102 LS----GNKLKDISTL-----EPLKKLECLKSLDLFNC 130

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 42.4 bits (100), Expect = 1e-04
 Identities = 29/145 (20%), Positives = 46/145 (31%), Gaps = 36/145 (24%)

Query: 115 DLKHLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRCLDLS 174
               +  L L        +I        NL +L+L            L ++SNL      
Sbjct: 22  TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINV--------GLISVSNLP----- 68

Query: 175 WSEYALQVHSFSWLSGQIPNRLGNLTSLRHLDLSANKFNSTTAGWLSKFNHLEFLSLSSN 234
                                   L  L+ L+LS N+          K  +L  L+LS N
Sbjct: 69  -----------------------KLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGN 105

Query: 235 GLQGTISSIGLENLTSIKTIDLSLN 259
            L+   +   L+ L  +K++DL   
Sbjct: 106 KLKDISTLEPLKKLECLKSLDLFNC 130

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 40.9 bits (96), Expect = 4e-04
 Identities = 21/83 (25%), Positives = 37/83 (44%), Gaps = 3/83 (3%)

Query: 609 RIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQIPENIGNLISIESLDFSTNQLSS 668
            ++D  K+N  G+I         L+ L+L +      +  N+  L  ++ L+ S N++  
Sbjct: 29  LVLDNCKSN-DGKIEGLTAEFVNLEFLSLINVGLI-SV-SNLPKLPKLKKLELSENRIFG 85

Query: 669 KISQSMSSLSFLNHLNVSNNLLT 691
            +      L  L HLN+S N L 
Sbjct: 86  GLDMLAEKLPNLTHLNLSGNKLK 108

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 51.9 bits (123), Expect = 4e-07
 Identities = 28/170 (16%), Positives = 57/170 (33%), Gaps = 22/170 (12%)

Query: 237 QGTISSIGLENLTSIKTIDLSLNFE---LGGPIPTSFVRLCELTSIDVSDVKLSQDLSQV 293
           +  IS I   +L+ +      LN         +         L S+++    L      V
Sbjct: 153 EQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGKKPRPNLKSLEIISGGLP---DSV 209

Query: 294 LDILSACGASALESLV--FSSSQISGHLTSQL-------GQFKSLRTLSLDDNCISGPLP 344
           ++ +       LE LV               +        +F +L+ L + D      + 
Sbjct: 210 VEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVV 269

Query: 345 PALGD---LSSLTRLDLSRNMLNGS----IPLSLGKISHLEYLDLSNNKM 387
               +   L  L  +D+S  +L       +   + KI HL+++++  N +
Sbjct: 270 EMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYL 319

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 48.4 bits (114), Expect = 5e-06
 Identities = 33/207 (15%), Positives = 64/207 (30%), Gaps = 30/207 (14%)

Query: 310 FSSSQISGHLTSQLGQFKSLRTLSLDDNCISGPLPP--ALGDLSSL--TRLDLSRNMLNG 365
              S I+  +     +F     L   D              DLS +      L+   + G
Sbjct: 122 EDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKG 181

Query: 366 SIPLSLGKISH--LEYLDLSNNKMNGT----LSEIHFVNLTKLT-WFSAS---GNSLILQ 415
           +  LS+GK     L+ L++ +  +  +    +      NL KL  +        +  +  
Sbjct: 182 TNNLSIGKKPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNV 241

Query: 416 VNPNWVPP--FQLKTLLLMSCHLGPQFPSWLHS---QKNLSVLDISNARISDTIPRWFWN 470
             P +       LK L ++                    L  +DIS   ++D   R    
Sbjct: 242 FRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGAR---- 297

Query: 471 SIFQLSGIIPESFKNFSNLEVLNLGDN 497
                  ++ +      +L+ +N+  N
Sbjct: 298 -------LLLDHVDKIKHLKFINMKYN 317

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 44.9 bits (105), Expect = 7e-05
 Identities = 35/279 (12%), Positives = 92/279 (32%), Gaps = 30/279 (10%)

Query: 81  SLRNPFRNDLRYATTEYEDYMRSMLSGNVNPSLVDLKHLTHLDLSGNDFQGIRIPKYLGS 140
            +    + + +     Y++    +   +       L  L  + +    ++G         
Sbjct: 71  EVAKEMKVEAKKYALSYDEAEEGVNLMDKILKDKKLPSLKQITIGXWGYEGEDCSDIADG 130

Query: 141 LKNLRYL--NLSGAEFAGIIPHQLGNLSNLRCLDLSWSEYALQVHSFSWLSGQIPNRLGN 198
           +   +    +  G  +  I   +   +S +  +DLS    A+ + +   + G     +G 
Sbjct: 131 IVENKEKFAHFEGLFWGDIDFEEQ-EISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGK 189

Query: 199 LTS--LRHLDLSANKFNSTTAGWL--SKFNHLEFLSLSSNGLQGTISSIGLENLTSIKTI 254
                L+ L++ +     +    +  S   +LE L L   G++       +     + + 
Sbjct: 190 KPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLY-VGVEDYGFDGDMNVFRPLFSK 248

Query: 255 DLSLNFELGGPIPTSFVRLCELTSIDVSDVKLSQDLSQVLDILSACGASALESLVFSSSQ 314
           D                R   L  + + D +    + ++   L +     LE++  S+  
Sbjct: 249 D----------------RFPNLKWLGIVDAEEQNVVVEMF--LESDILPQLETMDISAGV 290

Query: 315 ISG----HLTSQLGQFKSLRTLSLDDNCISGPLPPALGD 349
           ++      L   + + K L+ +++  N +S  +   L  
Sbjct: 291 LTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQK 329

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 49.3 bits (118), Expect = 6e-07
 Identities = 20/125 (16%), Positives = 34/125 (27%), Gaps = 15/125 (12%)

Query: 111 PSLVDLKHLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRC 170
               +      LDL G       I     +L     ++ S  E   +       L  L+ 
Sbjct: 13  AQYTNAVRDRELDLRGYKIP--VIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKT 68

Query: 171 LDLSWSEYALQVHSFSWLSGQIPNRLGNLTSLRHLDLSANKFNS-TTAGWLSKFNHLEFL 229
           L ++ +           +          L  L  L L+ N          L+    L +L
Sbjct: 69  LLVNNNR----------ICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYL 118

Query: 230 SLSSN 234
            +  N
Sbjct: 119 CILRN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 49.3 bits (118), Expect = 7e-07
 Identities = 27/133 (20%), Positives = 44/133 (33%), Gaps = 17/133 (12%)

Query: 284 VKLSQDLSQVLDILSACGASALESLVFSSSQIS--GHLTSQLGQFKSLRTLSLDDNCISG 341
           VKL+ +L  +        A     L     +I    +L + L        +   DN I  
Sbjct: 2   VKLTAEL--IEQAAQYTNAVRDRELDLRGYKIPVIENLGATL---DQFDAIDFSDNEIR- 55

Query: 342 PLPPALGDLSSLTRL---DLSRNMLNGSIPLSLGKISHLEYLDLSNNKMNGTLSEI-HFV 397
                L     L RL    ++ N +          +  L  L L+NN +   L ++    
Sbjct: 56  ----KLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLA 110

Query: 398 NLTKLTWFSASGN 410
           +L  LT+     N
Sbjct: 111 SLKSLTYLCILRN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 44.3 bits (105), Expect = 3e-05
 Identities = 25/122 (20%), Positives = 42/122 (34%), Gaps = 13/122 (10%)

Query: 138 LGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRCLDLSWSEYALQVHSFSWLSGQIPNRLG 197
             +    R L+L G +   +I +    L     +D S +E          L G       
Sbjct: 15  YTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNE-------IRKLDG-----FP 61

Query: 198 NLTSLRHLDLSANKFNSTTAGWLSKFNHLEFLSLSSNGLQGTISSIGLENLTSIKTIDLS 257
            L  L+ L ++ N+      G       L  L L++N L        L +L S+  + + 
Sbjct: 62  LLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCIL 121

Query: 258 LN 259
            N
Sbjct: 122 RN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 40.0 bits (94), Expect = 8e-04
 Identities = 20/147 (13%), Positives = 46/147 (31%), Gaps = 24/147 (16%)

Query: 356 LDLSRNMLNGSIPLSLGKISHLEYLDLSNNKMNGTLSEIH--FVNLTKLTWFSASGNSLI 413
           + L+  ++  +             LDL   K    +  I      L +      S N + 
Sbjct: 2   VKLTAELIEQA--AQYTNAVRDRELDLRGYK----IPVIENLGATLDQFDAIDFSDNEI- 54

Query: 414 LQVNPNWVPPFQLKTLLLMSCHLGPQFPSWLHSQKNLSVLDISNARISDTIPRWFWNSIF 473
            +    +    +LKTLL+ +  +         +  +L+ L ++N  + +         + 
Sbjct: 55  -RKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVE------LGDL- 106

Query: 474 QLSGIIPESFKNFSNLEVLNLGDNEFV 500
                  +   +  +L  L +  N   
Sbjct: 107 -------DPLASLKSLTYLCILRNPVT 126

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 49.7 bits (118), Expect = 2e-06
 Identities = 23/108 (21%), Positives = 37/108 (34%), Gaps = 14/108 (12%)

Query: 132 IRIPKYLGSLKNLRYLNLSGAEFAGIIP-HQLGNLSNLRCLDLSWSEYA-LQVHSFSWLS 189
           +    +L   +NL  L +   +    +    L  L  LR L +  S    +   +F    
Sbjct: 21  LDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFH--- 77

Query: 190 GQIPNRLGNLTSLRHLDLSANKFNSTTAGWLSKFNHLEFLSLSSNGLQ 237
                       L  L+LS N   S +   +   + L+ L LS N L 
Sbjct: 78  --------FTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 49.0 bits (116), Expect = 3e-06
 Identities = 18/94 (19%), Positives = 33/94 (35%), Gaps = 9/94 (9%)

Query: 344 PPALGDLSSLTRLDLSRNMLNGSIPL-SLGKISHLEYLDLSNNKMNGTLSEIH---FVNL 399
              L    +LT L +        + L  L  +  L  L +  +     L  +    F   
Sbjct: 24  LHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSG----LRFVAPDAFHFT 79

Query: 400 TKLTWFSASGNSLILQVNPNWVPPFQLKTLLLMS 433
            +L+  + S N+L   ++   V    L+ L+L  
Sbjct: 80  PRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSG 112

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 47.8 bits (113), Expect = 8e-06
 Identities = 24/108 (22%), Positives = 40/108 (37%), Gaps = 15/108 (13%)

Query: 108 NVNPSLVDLKHLTHLDLSGNDFQGIR-IPKY-LGSLKNLRYLNLSGAEFAGIIPHQLGNL 165
           +    L   ++LT L +     Q ++ +    L  L  LR L +  +    + P      
Sbjct: 22  DSLHHLPGAENLTELYIENQ--QHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFT 79

Query: 166 SNLRCLDLSWSEYALQVHSFSWLSGQIPNRLGNLTSLRHLDLSANKFN 213
             L  L+LS        ++   LS +    L    SL+ L LS N  +
Sbjct: 80  PRLSRLNLS-------FNALESLSWKTVQGL----SLQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 47.0 bits (111), Expect = 2e-05
 Identities = 26/89 (29%), Positives = 39/89 (43%), Gaps = 2/89 (2%)

Query: 301 GASALESLVFSSSQISGHLTSQ-LGQFKSLRTLSLDDNCISGPLPPALGDLSSLTRLDLS 359
           GA  L  L   + Q   HL  + L     LR L++  + +    P A      L+RL+LS
Sbjct: 29  GAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88

Query: 360 RNMLNGSIPLSLGKISHLEYLDLSNNKMN 388
            N L  S+     +   L+ L LS N ++
Sbjct: 89  FNALE-SLSWKTVQGLSLQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 46.3 bits (109), Expect = 2e-05
 Identities = 22/102 (21%), Positives = 38/102 (37%), Gaps = 11/102 (10%)

Query: 158 IPHQLGNLSNLRCLDLSWSEYALQVHSFSWLSGQIPNRLGNLTSLRHLDLSANKFNSTTA 217
             H L    NL  L +   ++   +             L  L  LR+L +  +       
Sbjct: 23  SLHHLPGAENLTELYIENQQHLQHLELRD---------LRGLGELRNLTIVKSGLRFVAP 73

Query: 218 GWLSKFNHLEFLSLSSNGLQGTISSIGLENLTSIKTIDLSLN 259
                   L  L+LS N L+ ++S   ++ L S++ + LS N
Sbjct: 74  DAFHFTPRLSRLNLSFNALE-SLSWKTVQGL-SLQELVLSGN 113

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 45.1 bits (106), Expect = 5e-05
 Identities = 12/72 (16%), Positives = 23/72 (31%), Gaps = 1/72 (1%)

Query: 621 EIPMELTYLRGLQSLNLSHNIFTGQIPEN-IGNLISIESLDFSTNQLSSKISQSMSSLSF 679
           +    L     L  L + +      +    +  L  + +L    + L      +      
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPR 81

Query: 680 LNHLNVSNNLLT 691
           L+ LN+S N L 
Sbjct: 82  LSRLNLSFNALE 93

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 43.2 bits (101), Expect = 2e-04
 Identities = 13/82 (15%), Positives = 24/82 (29%)

Query: 479 IPESFKNFSNLEVLNLGDNEFVGKIPTWMGEGFTSLLILILRSNKFDGFLPIQLCRLTSL 538
                    NL  L + + + +  +      G   L  L +  +      P        L
Sbjct: 23  SLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRL 82

Query: 539 QILDVANNSLSGTMPGCVNNFS 560
             L+++ N+L       V   S
Sbjct: 83  SRLNLSFNALESLSWKTVQGLS 104

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 41.3 bits (96), Expect = 9e-04
 Identities = 16/89 (17%), Positives = 33/89 (37%), Gaps = 4/89 (4%)

Query: 605 LNLVRIIDVSKNNFSGEIPME-LTYLRGLQSLNLSHNIFTGQIPENI-GNLISIESLDFS 662
              +  + +        + +  L  L  L++L +  +     +  +       +  L+ S
Sbjct: 30  AENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPDAFHFTPRLSRLNLS 88

Query: 663 TNQLSSKISQSMSSLSFLNHLNVSNNLLT 691
            N L S   +++  LS L  L +S N L 
Sbjct: 89  FNALESLSWKTVQGLS-LQELVLSGNPLH 116

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 49.7 bits (119), Expect = 2e-06
 Identities = 38/259 (14%), Positives = 74/259 (28%), Gaps = 49/259 (18%)

Query: 116 LKHLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAE-FAGIIPHQLGNLSNLRCLDLS 174
                 L L  N                         +    ++ H   +   +  L LS
Sbjct: 125 FLRARKLGLQLNSLGP------------------EACKDLRDLLLH---DQCQITTLRLS 163

Query: 175 WSEYALQVHSFSWLSGQIPNRLGNLTSLRHLDLSANKFNSTTAGWLS---KFN-HLEFLS 230
            +   L     + L       L   TS+ HL L            L+     N  L+ L+
Sbjct: 164 NNP--LTAAGVAVLM----EGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELN 217

Query: 231 LSSNGLQGT----ISSIGLENLTSIKTIDLSLNFELGGPIPTSFVRLCELTSIDVSDVKL 286
           ++ NG   T    ++        S++ + L  N EL          L +L        ++
Sbjct: 218 VAYNGAGDTAALALAR-AAREHPSLELLHLYFN-ELS---SEGRQVLRDLGGAAEGGARV 272

Query: 287 SQDLSQVLDILSACGASALESLVFSSSQISGHLTSQLGQFKSLRTLSLDDNCISGPLPPA 346
              L++    +S   +  L  +  + +       +++ +   L    L+D+  +   P  
Sbjct: 273 VVSLTE-GTAVSEYWSVILSEVQRNLNS---WDRARVQRHLELLLRDLEDSRGATLNPWR 328

Query: 347 LGDL----SSLTRLDLSRN 361
              L      +  L     
Sbjct: 329 KAQLLRVEGEVRALLEQLG 347

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 47.0 bits (112), Expect = 2e-05
 Identities = 45/277 (16%), Positives = 74/277 (26%), Gaps = 44/277 (15%)

Query: 117 KHLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLS----GAEFAGIIPHQL-GNLSNLRCL 171
             L  ++L+        +   L      R L L     G E    +   L  +   +  L
Sbjct: 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTL 160

Query: 172 DLSWSEYALQVHSFSWLSGQIPNRLGNLTSLRHLDLSANKFNSTTAGWLS---KFN-HLE 227
            LS +   L     + L       L   TS+ HL L            L+     N  L+
Sbjct: 161 RLSNNP--LTAAGVAVLM----EGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQ 214

Query: 228 FLSLSSNGLQGT----ISSIGLENLTSIKTIDLSLNF-----------ELGGPIPTSFVR 272
            L+++ NG   T    ++        S++ + L  N              G     + V 
Sbjct: 215 ELNVAYNGAGDTAALALAR-AAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVV 273

Query: 273 LCELTSIDVSD---VKLSQDL--SQVLDILSACGASALESLVFSSSQISGHLTSQLGQF- 326
           +       VS+   V LS+        D         L       S+ +     +  Q  
Sbjct: 274 VSLTEGTAVSEYWSVILSEVQRNLNSWDRARVQRHLELLLRDLEDSRGATLNPWRKAQLL 333

Query: 327 ---KSLRTLSLDDNCISGP----LPPALGDLSSLTRL 356
                +R L         P      P     +     
Sbjct: 334 RVEGEVRALLEQLGSSGSPSGSWSHPQFEKGAGHHHH 370

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 44.7 bits (106), Expect = 8e-05
 Identities = 54/388 (13%), Positives = 101/388 (26%), Gaps = 108/388 (27%)

Query: 163 GNLSNLRCLDLSWSEYALQVHSFSWLSGQIPNRLGNLTSLRHLDLSANKFNSTTAGW--- 219
             L     LD  +  Y  Q   FS            L+SLR L+L+  +           
Sbjct: 44  QVLPPSELLDHLFFHYEFQNQRFS---------AEVLSSLRQLNLAGVRMTP--VKCTVV 92

Query: 220 ----LSKFNHLEFLSLSSNGLQGTISSIGLENLTSIKTIDLSLNFELGGPIPTSFVRLCE 275
                S  + L+ ++L+S      +   GL  L  +                        
Sbjct: 93  AAVLGSGRHALDEVNLASCQ----LDPAGLRTLLPV---------------------FLR 127

Query: 276 LTSIDVSDVKLSQDLSQVLDILSACGASAL-ESLVFSSSQISGHLTSQLGQFKSLRTLSL 334
              + +    L  +               L + L+                   + TL L
Sbjct: 128 ARKLGLQLNSLGPE-----------ACKDLRDLLLHDQC--------------QITTLRL 162

Query: 335 DDNCISGP----LPPALGDLSSLTRLDLSRNML--NGSIPLS--LGKISHLEYLDLSNNK 386
            +N ++      L   L   +S+T L L    L   G   L+  L +   L+ L+++ N 
Sbjct: 163 SNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYN- 221

Query: 387 MNGTLSEIHFVNLTKLTWFSASGNSLILQVNPNWVPPFQLKTLLLMSCHLGP-------Q 439
                              +A   +   + +P+      L+ L L    L          
Sbjct: 222 --------------GAGDTAALALARAAREHPS------LELLHLYFNELSSEGRQVLRD 261

Query: 440 FPSWLHSQKNLSVLDISNARISDTIPRWFWNSIFQLSGIIPESFKNFSNLEVLNLGDNEF 499
                     + V       +S+            L+       +    L + +L D+  
Sbjct: 262 LGGAAEGGARVVVSLTEGTAVSEYWSVILSEVQRNLNSWDRARVQRHLELLLRDLEDSRG 321

Query: 500 VGKIPTWMGEGF---TSLLILILRSNKF 524
               P    +       +  L+ +    
Sbjct: 322 ATLNPWRKAQLLRVEGEVRALLEQLGSS 349

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 47.4 bits (113), Expect = 6e-06
 Identities = 42/145 (28%), Positives = 65/145 (44%), Gaps = 14/145 (9%)

Query: 116 LKHLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRCLDLSW 175
           L  LT L+L  N  Q +        L  L  L L+  + A +      +L+ L  L L  
Sbjct: 58  LTKLTWLNLDYNQLQTLS-AGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGG 116

Query: 176 SEYALQVHSFSWLSGQIPNRL-GNLTSLRHLDLSANKFNSTTAGWLSKFNHLEFLSLSSN 234
           +    Q+ S       +P+ +   LT L+ L L+ N+  S  AG   K  +L+ LSLS+N
Sbjct: 117 N----QLKS-------LPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTN 165

Query: 235 GLQGTISSIGLENLTSIKTIDLSLN 259
            LQ ++     + L  ++TI L  N
Sbjct: 166 QLQ-SVPHGAFDRLGKLQTITLFGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 42.8 bits (101), Expect = 2e-04
 Identities = 51/213 (23%), Positives = 77/213 (36%), Gaps = 60/213 (28%)

Query: 200 TSLRHLDLSANKFNSTTAGWLSKFNHLEFLSLSSNGLQGTISSIGLENLTSIKTIDLSLN 259
                LDL +    + +         L +L+L  N LQ T+S+   ++LT + T+ L+ N
Sbjct: 35  ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ-TLSAGVFDDLTELGTLGLANN 93

Query: 260 FELGGPIPTSFVRLCELTSIDVSDVKLSQDLSQVLDILSACGASALESLVFSSSQISGHL 319
                          +L S                          L   VF        L
Sbjct: 94  ---------------QLAS--------------------------LPLGVFDH------L 106

Query: 320 TSQLGQFKSLRTLSLDDNCISGPLPPALGD-LSSLTRLDLSRNMLNGSIPLSL-GKISHL 377
           T        L  L L  N +   LP  + D L+ L  L L+ N L  SIP     K+++L
Sbjct: 107 T-------QLDKLYLGGNQLKS-LPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKLTNL 157

Query: 378 EYLDLSNNKMNGTLSEIHFVNLTKLTWFSASGN 410
           + L LS N++  ++    F  L KL   +  GN
Sbjct: 158 QTLSLSTNQLQ-SVPHGAFDRLGKLQTITLFGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 42.4 bits (100), Expect = 3e-04
 Identities = 31/109 (28%), Positives = 48/109 (44%), Gaps = 5/109 (4%)

Query: 306 ESLVFSSSQISGHLTSQLGQFKSLRTLSLDDNCISGPLPP-ALGDLSSLTRLDLSRNMLN 364
           E L   S+ ++    +       L  L+LD N +   L      DL+ L  L L+ N L 
Sbjct: 38  EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQT-LSAGVFDDLTELGTLGLANNQLA 96

Query: 365 GSIPLSL-GKISHLEYLDLSNNKMNGTLSEIHFVNLTKLTWFSASGNSL 412
            S+PL +   ++ L+ L L  N++  +L    F  LTKL     + N L
Sbjct: 97  -SLPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQL 143

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.5 bits (112), Expect = 2e-05
 Identities = 65/446 (14%), Positives = 124/446 (27%), Gaps = 140/446 (31%)

Query: 36  REALLKLKQDLKDPSNRLGSWVVDGD--CCKWAEVVCSNLTGHVLQ-LSLRNPFRNDLRY 92
           R+ALL+L+     P+  +   ++DG     K        +   V     ++      + +
Sbjct: 141 RQALLELR-----PAKNV---LIDGVLGSGKTW------VALDVCLSYKVQCKMDFKIFW 186

Query: 93  ATTEYEDYMRSMLSGNVNPSLVDLKHLTHLDLSGNDFQGIRIPKYLGSLKN-LRYLNLSG 151
              +  +   ++L       L  L +    + +        I   + S++  LR L L  
Sbjct: 187 LNLKNCNSPETVLE-----MLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRL-LKS 240

Query: 152 AEFAGIIPHQLGNLSNLRCL----DLSWSEYALQVHSFS--WL----SGQIPNRLGNLTS 201
             +               CL    ++  +  A    + S   L      Q+ + L   T+
Sbjct: 241 KPYE-------------NCLLVLLNV-QNAKAWNAFNLSCKILLTTRFKQVTDFLSAATT 286

Query: 202 LRHLDLSANKFNST---TAGWLSKFNHLEFLSLSSNGLQG---TISSIG----------- 244
             H+ L  +    T       L K+       L    L      +S I            
Sbjct: 287 -THISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWD 345

Query: 245 ------LENLTSIKTIDLSLN----------------FELGGPIPTS-FVRL-CELTSID 280
                  + LT+I  I+ SLN                F     IPT     +  ++   D
Sbjct: 346 NWKHVNCDKLTTI--IESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSD 403

Query: 281 VSDV----------------------KLSQDLSQVLDILSACGASALESLV--------- 309
           V  V                       +  +L   L+   A   S ++            
Sbjct: 404 VMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDD 463

Query: 310 FSSSQISG--------HLTS--QLGQFKSLRTLSLDDNCI------SGPLPPALGD-LSS 352
                +          HL +     +    R + LD   +            A G  L++
Sbjct: 464 LIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNT 523

Query: 353 LTRLDLSRNMLNGSIPLSLGKISHLE 378
           L +L   +  +  + P     ++ + 
Sbjct: 524 LQQLKFYKPYICDNDPKYERLVNAIL 549

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 45.4 bits (108), Expect = 2e-05
 Identities = 24/81 (29%), Positives = 36/81 (44%), Gaps = 2/81 (2%)

Query: 332 LSLDDNCISGPLPPALGDLSSLTRLDLSRNMLNGSIPLSLGKISHLEYLDLSNNKMNGTL 391
           L LD N  +  +P  L +   LT +DLS N ++     S   ++ L  L LS N++   +
Sbjct: 36  LYLDGNQFTL-VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLR-CI 93

Query: 392 SEIHFVNLTKLTWFSASGNSL 412
               F  L  L   S  GN +
Sbjct: 94  PPRTFDGLKSLRLLSLHGNDI 114

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 43.8 bits (104), Expect = 5e-05
 Identities = 33/140 (23%), Positives = 51/140 (36%), Gaps = 37/140 (26%)

Query: 120 THLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRCLDLSWSEYA 179
           T L L GN F    +PK L + K+L  ++LS         +++  LSN            
Sbjct: 34  TELYLDGNQFT--LVPKELSNYKHLTLIDLSN--------NRISTLSN------------ 71

Query: 180 LQVHSFSWLSGQIPNRLGNLTSLRHLDLSANKFNSTTAGWLSKFNHLEFLSLSSNGLQGT 239
               SFS           N+T L  L LS N+              L  LSL  N +   
Sbjct: 72  ---QSFS-----------NMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDIS-V 116

Query: 240 ISSIGLENLTSIKTIDLSLN 259
           +      +L+++  + +  N
Sbjct: 117 VPEGAFNDLSALSHLAIGAN 136

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 43.9 bits (104), Expect = 8e-05
 Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 4/80 (5%)

Query: 325 QFKSLRTLSLDDNCISGPLPPALGD-LSSLTRLDLSRNMLNGSIPLSLGKISHLEYLDLS 383
               L  L L  N ++  LP A+ D L  L  L +  N L   +P  + +++HL +L L 
Sbjct: 86  SLTQLTVLDLGTNQLTV-LPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALD 143

Query: 384 NNKMNGTLSEIHFVNLTKLT 403
            N++  ++    F  L+ LT
Sbjct: 144 QNQLK-SIPHGAFDRLSSLT 162

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 40.8 bits (96), Expect = 6e-04
 Identities = 39/141 (27%), Positives = 62/141 (43%), Gaps = 14/141 (9%)

Query: 120 THLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRCLDLSWSEYA 179
           T+LDL  N  + +        L +L  L L G +   +       L++L  L+LS +   
Sbjct: 31  TYLDLETNSLKSLP-NGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN--- 86

Query: 180 LQVHSFSWLSGQIPNRL-GNLTSLRHLDLSANKFNSTTAGWLSKFNHLEFLSLSSNGLQG 238
            Q+ S       +PN +   LT L+ L L+ N+  S   G   K   L+ L L  N L+ 
Sbjct: 87  -QLQS-------LPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLK- 137

Query: 239 TISSIGLENLTSIKTIDLSLN 259
           ++     + LTS++ I L  N
Sbjct: 138 SVPDGVFDRLTSLQYIWLHDN 158

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	794
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	100.0
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	100.0
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	100.0
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.97
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.97
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.97
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.97
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.97
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.97
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.97
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.96
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.96
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.96
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.95
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.95
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.95
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.95
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.95
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.94
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.94
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.94
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.94
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.93
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.93
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.93
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.93
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.93
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.93
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.93
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.93
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.92
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.92
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.91
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.9
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.9
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.9
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.89
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.89
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.88
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.88
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.87
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.87
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.87
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.87
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.86
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.85
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.85
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.85
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.85
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.84
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.84
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.84
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.84
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.84
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.83
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.82
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.81
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.81
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.8
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.79
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.79
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.79
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.78
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.77
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.77
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.76
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.76
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.74
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.73
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.73
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.73
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.73
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.72
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.71
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.7
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.7
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.7
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.69
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.69
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.68
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.68
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.67
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.67
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.65
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.62
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.62
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.61
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.6
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.6
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.59
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.58
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.57
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.56
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.56
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.52
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.51
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.49
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.47
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.46
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.42
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.41
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.41
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.37
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.35
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.34
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.32
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.3
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.24
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.18
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.14
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.09
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.04
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.81
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.78
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.7
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.69
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.44
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.39
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.34
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.3
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.9
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.65
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	96.98
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.83
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.63
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	96.51

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=2.8e-84  Score=768.86  Aligned_cols=668  Identities=29%  Similarity=0.398  Sum_probs=493.7

Q ss_pred             CCCHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcceeeeEecCCCCcEEEEEcCCCCCccc---c---ccchhhhhcccc
Q 046398           30 GCTDSEREALLKLKQDLKDPSNRLGSWVVDGDCCKWAEVVCSNLTGHVLQLSLRNPFRNDL---R---YATTEYEDYMRS  103 (794)
Q Consensus        30 ~~~~~~~~~ll~~k~~~~~~~~~~~~W~~~~~~c~w~gv~c~~~~~~v~~L~l~~~~~~~~---~---~~~~~~~~~~~~  103 (794)
                      .+.++|++||++||+++.||. .+++|+.+.|||.|+||+|+  ++||++|+|++......   .   ...+..+++..+
T Consensus         8 ~~~~~~~~all~~k~~~~~~~-~l~~W~~~~~~C~w~gv~C~--~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l~~   84 (768)
T 3rgz_A            8 QSLYREIHQLISFKDVLPDKN-LLPDWSSNKNPCTFDGVTCR--DDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFL   84 (768)
T ss_dssp             CCHHHHHHHHHHHHTTCSCTT-SSTTCCTTSCGGGSTTEEEE--TTEEEEEECTTSCCCEEHHHHHHHTTTCTTCCEEEC
T ss_pred             cCCHHHHHHHHHHHhhCCCcc-cccCCCCCCCCcCCcceEEC--CCcEEEEECCCCCcCCccCccChhHhccCcccccCC
Confidence            347899999999999999988 89999878899999999998  68999999998643221   1   112223333333


Q ss_pred             ccceeec--ccccCCCCCCEEeCCCCCCCCCCCCc--ccCCCCCCCEEEcCCCCCCCCCcccc-cCCccccccccCcccc
Q 046398          104 MLSGNVN--PSLVDLKHLTHLDLSGNDFQGIRIPK--YLGSLKNLRYLNLSGAEFAGIIPHQL-GNLSNLRCLDLSWSEY  178 (794)
Q Consensus       104 ~l~g~~~--~~l~~l~~L~~L~Ls~n~l~~~~~p~--~~~~l~~L~~L~Ls~n~l~~~~p~~l-~~l~~L~~L~Ls~~~~  178 (794)
                      ...|..+  +.++++++|++|+|++|.+++. +|.  .++++++|++|+|++|.+.+..|..+ .++++|++|++++|.+
T Consensus        85 ~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l  163 (768)
T 3rgz_A           85 SNSHINGSVSGFKCSASLTSLDLSRNSLSGP-VTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSI  163 (768)
T ss_dssp             TTSCEEECCCCCCCCTTCCEEECCSSEEEEE-GGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCC
T ss_pred             cCCCcCCCchhhccCCCCCEEECCCCcCCCc-CCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCcc
Confidence            3444333  4556666666666666665542 455  55666666666666666655555544 5566666666665552


Q ss_pred             ccccccccccccCCCCc---cCCCCCCCEEECcCCCCCCCCCccccCCCCCCeEeeeccCCCCCCCccccCCCCCCcEEE
Q 046398          179 ALQVHSFSWLSGQIPNR---LGNLTSLRHLDLSANKFNSTTAGWLSKFNHLEFLSLSSNGLQGTISSIGLENLTSIKTID  255 (794)
Q Consensus       179 ~~~~~~~~~~~~~lp~~---l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~  255 (794)
                                .+..|..   +.++++|++|++++|.+++..+  +..+++|++|++++|.+++.+|.  ++++++|++|+
T Consensus       164 ----------~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~~~~~--l~~l~~L~~L~  229 (768)
T 3rgz_A          164 ----------SGANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIPF--LGDCSALQHLD  229 (768)
T ss_dssp             ----------EEETHHHHHHTTCCTTCCEEECCSSEEESCCB--CTTCTTCCEEECCSSCCCSCCCB--CTTCCSCCEEE
T ss_pred             ----------CCcCChhhhhhccCCCCCEEECCCCcccccCC--cccCCcCCEEECcCCcCCCCCcc--cccCCCCCEEE
Confidence                      2333433   5566666666666666665544  25666777777777777665554  66777777777


Q ss_pred             ccCCCCCCCCCchhhhccCCCCEEEccCCCCCcchHHHHHhhhhcCcCCccEEEeecccccccccccccCC-CCCCEEEc
Q 046398          256 LSLNFELGGPIPTSFVRLCELTSIDVSDVKLSQDLSQVLDILSACGASALESLVFSSSQISGHLTSQLGQF-KSLRTLSL  334 (794)
Q Consensus       256 L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~~l~~l-~~L~~L~L  334 (794)
                      ++ ++.+.+.+|..+.++++|+.|++++|.+.+.+|..       .+++|++|++++|.+++.+|..+... ++|++|++
T Consensus       230 Ls-~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~-------~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~L  301 (768)
T 3rgz_A          230 IS-GNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL-------PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDL  301 (768)
T ss_dssp             CC-SSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC-------CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEEC
T ss_pred             Cc-CCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc-------ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEEC
Confidence            77 55666666777777777777777777776655443       23477777777777777777776654 77888888


Q ss_pred             cCCcCcCCCCCCcCCCCCCCEEEccCCcccccCCcc-ccCCCCCCeEeccCcccccccChhhhcCCC-CCCEEECcCCcc
Q 046398          335 DDNCISGPLPPALGDLSSLTRLDLSRNMLNGSIPLS-LGKISHLEYLDLSNNKMNGTLSEIHFVNLT-KLTWFSASGNSL  412 (794)
Q Consensus       335 ~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~-l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~-~L~~L~ls~n~l  412 (794)
                      ++|.+++.+|..++++++|++|++++|.+++.+|.. +..+++|++|++++|++.+.+|. .+..++ +|+.|++++|.+
T Consensus       302 s~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~-~l~~l~~~L~~L~Ls~N~l  380 (768)
T 3rgz_A          302 SGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPE-SLTNLSASLLTLDLSSNNF  380 (768)
T ss_dssp             CSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCT-THHHHTTTCSEEECCSSEE
T ss_pred             cCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccH-HHHhhhcCCcEEEccCCCc
Confidence            888777777777777788888888888777777755 77777888888888877776666 455555 777777777777


Q ss_pred             eeEcCCCCcC--ccccceEecccccCCCCCCcccCCCCCCCEEeccCCCCCCCcchhHHhccc---------cceeccCc
Q 046398          413 ILQVNPNWVP--PFQLKTLLLMSCHLGPQFPSWLHSQKNLSVLDISNARISDTIPRWFWNSIF---------QLSGIIPE  481 (794)
Q Consensus       413 ~~~~~~~~~~--~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~---------~l~~~~p~  481 (794)
                      .+..+..+..  .++|++|++++|.+++.+|..+..+++|++|++++|++++.+|..+.....         .+.+.+|.
T Consensus       381 ~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~  460 (768)
T 3rgz_A          381 SGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQ  460 (768)
T ss_dssp             EEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCG
T ss_pred             CCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCH
Confidence            7776666655  667888888888888888888888888888888888888888877765432         56677888


Q ss_pred             ccCCCCCCCEEEccCCcccccCChhhhhcCCCCcEEEcccccccccCCccccCCCCCCEEEccCCcCcccCCchhhcccc
Q 046398          482 SFKNFSNLEVLNLGDNEFVGKIPTWMGEGFTSLLILILRSNKFDGFLPIQLCRLTSLQILDVANNSLSGTMPGCVNNFSA  561 (794)
Q Consensus       482 ~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~  561 (794)
                      .+..+++|++|++++|++++.+|..+. .+++|++|++++|++++.+|..+..+++|++|++++|+++|.+|..+.++++
T Consensus       461 ~~~~l~~L~~L~L~~N~l~~~~p~~l~-~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~  539 (768)
T 3rgz_A          461 ELMYVKTLETLILDFNDLTGEIPSGLS-NCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRS  539 (768)
T ss_dssp             GGGGCTTCCEEECCSSCCCSCCCGGGG-GCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTT
T ss_pred             HHcCCCCceEEEecCCcccCcCCHHHh-cCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCC
Confidence            888888888888888888888887776 6888888888888888888888888888888888888888888888888888


Q ss_pred             ccccccccCCCCccccccccc------------------------------------------ccc------cceeeEEE
Q 046398          562 MATIDSSHQSNAMSYFEVTAY------------------------------------------DCE------VLEDASIV  593 (794)
Q Consensus       562 L~~l~~~~~~~~~~~~~~~~~------------------------------------------~~~------~l~~~~~~  593 (794)
                      |+.++.+.+...-.++.....                                          ...      ........
T Consensus       540 L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~  619 (768)
T 3rgz_A          540 LIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRV  619 (768)
T ss_dssp             CCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCE
T ss_pred             CCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccce
Confidence            888876554321111110000                                          000      00000122


Q ss_pred             EeccchhhcccccceeEEEcCCCccccccChhhhcccCCCEEecccccccccCCccccccCCCCEEeCCCCcCcccCccc
Q 046398          594 MKGSMVEYNSILNLVRIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQIPENIGNLISIESLDFSTNQLSSKISQS  673 (794)
Q Consensus       594 ~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~  673 (794)
                      +.|..+.....++.|+.||+++|+++|.+|.+++++++|+.|+|++|+++|.+|+.++++++|++|||++|+++|.+|..
T Consensus       620 ~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~  699 (768)
T 3rgz_A          620 YGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQA  699 (768)
T ss_dssp             EEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGG
T ss_pred             ecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChH
Confidence            34555556667889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCCCEEeCcCCcccccCCCCCccCccCcccccCC-CcCCCCCCCCCCCC
Q 046398          674 MSSLSFLNHLNVSNNLLTGKIPSSTQLQSFDASCFVGN-NLCGPPLPSCTENN  725 (794)
Q Consensus       674 l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gn-~lcg~~~~~c~~~~  725 (794)
                      ++.+++|++||+++|+++|+||..++|++++..+|.|| +|||+|+..|....
T Consensus       700 l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l~~C~~~~  752 (768)
T 3rgz_A          700 MSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPRCDPSN  752 (768)
T ss_dssp             GGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTTSCCCCSCC
T ss_pred             HhCCCCCCEEECcCCcccccCCCchhhccCCHHHhcCCchhcCCCCcCCCCCc
Confidence            99999999999999999999999999999999999999 99999988886443

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=2.1e-63  Score=589.94  Aligned_cols=576  Identities=28%  Similarity=0.379  Sum_probs=423.3

Q ss_pred             cchhhhhccccccceeecc--cccCCCCCCEEeCCCCCCCCCCCCccc-CCCCCCCEEEcCCCCCCCCCccc---ccCCc
Q 046398           93 ATTEYEDYMRSMLSGNVNP--SLVDLKHLTHLDLSGNDFQGIRIPKYL-GSLKNLRYLNLSGAEFAGIIPHQ---LGNLS  166 (794)
Q Consensus        93 ~~~~~~~~~~~~l~g~~~~--~l~~l~~L~~L~Ls~n~l~~~~~p~~~-~~l~~L~~L~Ls~n~l~~~~p~~---l~~l~  166 (794)
                      ..+..++++++.+.|.+|.  .++++++|++|+|++|.+.+. +|..+ .++++|++|+|++|++++..|..   +.+++
T Consensus       100 ~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~  178 (768)
T 3rgz_A          100 ASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFP-GKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCG  178 (768)
T ss_dssp             TTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECC-SSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCT
T ss_pred             CCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCc-CCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCC
Confidence            4456677778899999998  899999999999999999874 66665 88999999999999999888877   78899


Q ss_pred             cccccccCccccccccccccccccCCCCccCCCCCCCEEECcCCCCCCCCCccccCCCCCCeEeeeccCCCCCCCccccC
Q 046398          167 NLRCLDLSWSEYALQVHSFSWLSGQIPNRLGNLTSLRHLDLSANKFNSTTAGWLSKFNHLEFLSLSSNGLQGTISSIGLE  246 (794)
Q Consensus       167 ~L~~L~Ls~~~~~~~~~~~~~~~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~l~  246 (794)
                      +|++|++++|.+.          +..|  +.++++|++|++++|.+++.+|. ++++++|++|++++|.+++.++. .+.
T Consensus       179 ~L~~L~Ls~n~l~----------~~~~--~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~-~l~  244 (768)
T 3rgz_A          179 ELKHLAISGNKIS----------GDVD--VSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSR-AIS  244 (768)
T ss_dssp             TCCEEECCSSEEE----------SCCB--CTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHH-HTT
T ss_pred             CCCEEECCCCccc----------ccCC--cccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccH-HHh
Confidence            9999999988754          2232  25677777777777777766665 77777777777777777766665 667


Q ss_pred             CCCCCcEEEccCCCCCCCCCchhhhccCCCCEEEccCCCCCcchHHHHHhhhhcCcCCccEEEeecccccccccccccCC
Q 046398          247 NLTSIKTIDLSLNFELGGPIPTSFVRLCELTSIDVSDVKLSQDLSQVLDILSACGASALESLVFSSSQISGHLTSQLGQF  326 (794)
Q Consensus       247 ~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~~l~~l  326 (794)
                      ++++|++|+++ ++.+.+.+|..  .+++|+.|++++|.+++.+|..+...    +++|++|++++|.+++.+|..++.+
T Consensus       245 ~l~~L~~L~Ls-~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~----~~~L~~L~Ls~n~l~~~~p~~~~~l  317 (768)
T 3rgz_A          245 TCTELKLLNIS-SNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGA----CDTLTGLDLSGNHFYGAVPPFFGSC  317 (768)
T ss_dssp             TCSSCCEEECC-SSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTT----CTTCSEEECCSSEEEECCCGGGGGC
T ss_pred             cCCCCCEEECC-CCcccCccCcc--ccCCCCEEECcCCccCCccCHHHHhh----cCcCCEEECcCCcCCCccchHHhcC
Confidence            77777777777 55555555544  66667777777776666655544332    1266777777777666666666666


Q ss_pred             CCCCEEEccCCcCcCCCCCC-cCCCCCCCEEEccCCcccccCCccccCCC-CCCeEeccCcccccccChhhhcC--CCCC
Q 046398          327 KSLRTLSLDDNCISGPLPPA-LGDLSSLTRLDLSRNMLNGSIPLSLGKIS-HLEYLDLSNNKMNGTLSEIHFVN--LTKL  402 (794)
Q Consensus       327 ~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~-~L~~L~Ls~N~l~~~~~~~~~~~--l~~L  402 (794)
                      ++|++|++++|.+++.+|.. +..+++|++|++++|.+++.+|..+..++ +|++|++++|++.+.++. .+..  +++|
T Consensus       318 ~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~-~~~~~~~~~L  396 (768)
T 3rgz_A          318 SLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILP-NLCQNPKNTL  396 (768)
T ss_dssp             TTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCT-TTTCSTTCCC
T ss_pred             CCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcCh-hhhhcccCCc
Confidence            77777777777666555544 66666677777777766666666666665 666666666666665554 2323  5566


Q ss_pred             CEEECcCCcceeEcCCCCcCccccceEecccccCCCCCCcccCCCCCCCEEeccCCCCCCCcchhHHhccc---------
Q 046398          403 TWFSASGNSLILQVNPNWVPPFQLKTLLLMSCHLGPQFPSWLHSQKNLSVLDISNARISDTIPRWFWNSIF---------  473 (794)
Q Consensus       403 ~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~---------  473 (794)
                      +.|++++|.+++..+..+..+++|++|++++|.+++.+|..+..+++|++|++++|++++.+|..+.....         
T Consensus       397 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N  476 (768)
T 3rgz_A          397 QELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFN  476 (768)
T ss_dssp             CEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSS
T ss_pred             cEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCC
Confidence            66666666666666666666666666666666666666666666666666666666666666665544321         


Q ss_pred             cceeccCcccCCCCCCCEEEccCCcccccCChhhhhcCCCCcEEEcccccccccCCccccCCCCCCEEEccCCcCcccCC
Q 046398          474 QLSGIIPESFKNFSNLEVLNLGDNEFVGKIPTWMGEGFTSLLILILRSNKFDGFLPIQLCRLTSLQILDVANNSLSGTMP  553 (794)
Q Consensus       474 ~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p  553 (794)
                      .+.+.+|..+.++++|++|++++|++++.+|.++. .+++|++|+|++|++++.+|..+..+++|++||+++|+++|.+|
T Consensus       477 ~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~-~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip  555 (768)
T 3rgz_A          477 DLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIG-RLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIP  555 (768)
T ss_dssp             CCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGG-GCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCC
T ss_pred             cccCcCCHHHhcCCCCCEEEccCCccCCcCChHHh-cCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCC
Confidence            45567888899999999999999999999999987 79999999999999999999999999999999999999999999


Q ss_pred             chhhccccccccccccC-------------------------CCC-----------------ccccccc---ccccccce
Q 046398          554 GCVNNFSAMATIDSSHQ-------------------------SNA-----------------MSYFEVT---AYDCEVLE  588 (794)
Q Consensus       554 ~~~~~l~~L~~l~~~~~-------------------------~~~-----------------~~~~~~~---~~~~~~l~  588 (794)
                      ..+.....+..+.....                         +..                 ..+....   ......+.
T Consensus       556 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~  635 (768)
T 3rgz_A          556 AAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMM  635 (768)
T ss_dssp             GGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCC
T ss_pred             hHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhcccccc
Confidence            98877665544321110                         000                 0000000   01112222


Q ss_pred             eeEE---EEeccchhhcccccceeEEEcCCCccccccChhhhcccCCCEEecccccccccCCccccccCCCCEEeCCCCc
Q 046398          589 DASI---VMKGSMVEYNSILNLVRIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQIPENIGNLISIESLDFSTNQ  665 (794)
Q Consensus       589 ~~~~---~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~  665 (794)
                      .+.+   ...|..+.....++.|+.|||++|+++|.+|..++++++|++|||++|+++|.+|+.++++++|++|||++|+
T Consensus       636 ~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~  715 (768)
T 3rgz_A          636 FLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNN  715 (768)
T ss_dssp             EEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSE
T ss_pred             EEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCc
Confidence            2222   2456777788889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcccCcccccCCCCCCEEeCcCCc-cccc
Q 046398          666 LSSKISQSMSSLSFLNHLNVSNNL-LTGK  693 (794)
Q Consensus       666 l~~~~p~~l~~l~~L~~L~ls~N~-l~g~  693 (794)
                      ++|.||.. ..+..+....+.+|+ +.|.
T Consensus       716 l~g~iP~~-~~~~~~~~~~~~gN~~Lcg~  743 (768)
T 3rgz_A          716 LSGPIPEM-GQFETFPPAKFLNNPGLCGY  743 (768)
T ss_dssp             EEEECCSS-SSGGGSCGGGGCSCTEEEST
T ss_pred             ccccCCCc-hhhccCCHHHhcCCchhcCC
Confidence            99999975 345556667778886 5654

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=4.1e-56  Score=522.91  Aligned_cols=567  Identities=23%  Similarity=0.245  Sum_probs=413.6

Q ss_pred             CcEEEEEcCCCCCccccccchhhhhccccccceeecccccCCCCCCEEeCCCCCCCCCCCCcccCCCCCCCEEEcCCCCC
Q 046398           75 GHVLQLSLRNPFRNDLRYATTEYEDYMRSMLSGNVNPSLVDLKHLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEF  154 (794)
Q Consensus        75 ~~v~~L~l~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l  154 (794)
                      .+++.|++++                  +.+.+..+..+.++++|++|+|++|.+++. .|..++++++|++|+|++|.+
T Consensus        25 ~~l~~L~Ls~------------------n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~l   85 (680)
T 1ziw_A           25 TNITVLNLTH------------------NQLRRLPAANFTRYSQLTSLDVGFNTISKL-EPELCQKLPMLKVLNLQHNEL   85 (680)
T ss_dssp             TTCSEEECCS------------------SCCCCCCGGGGGGGTTCSEEECCSSCCCCC-CTTHHHHCTTCCEEECCSSCC
T ss_pred             CCCcEEECCC------------------CCCCCcCHHHHhCCCcCcEEECCCCccCcc-CHHHHhcccCcCEEECCCCcc
Confidence            4677777776                  577777777899999999999999999975 688889999999999999999


Q ss_pred             CCCCcccccCCccccccccCccccccccccccccccCCCCccCCCCCCCEEECcCCCCCCCCCccccCCCCCCeEeeecc
Q 046398          155 AGIIPHQLGNLSNLRCLDLSWSEYALQVHSFSWLSGQIPNRLGNLTSLRHLDLSANKFNSTTAGWLSKFNHLEFLSLSSN  234 (794)
Q Consensus       155 ~~~~p~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n  234 (794)
                      ++..+..|+++++|++|++++|.+.          +..|..++++++|++|++++|.+++..+..+.++++|++|++++|
T Consensus        86 ~~l~~~~~~~l~~L~~L~L~~n~l~----------~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n  155 (680)
T 1ziw_A           86 SQLSDKTFAFCTNLTELHLMSNSIQ----------KIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNN  155 (680)
T ss_dssp             CCCCTTTTTTCTTCSEEECCSSCCC----------CCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSS
T ss_pred             CccChhhhccCCCCCEEECCCCccC----------ccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCC
Confidence            9666667999999999999988743          344578999999999999999999999988999999999999999


Q ss_pred             CCCCCCCcccc--CCCCCCcEEEccCCCCCCCCCchhhhccCCCCEEEccCCCCCcchHHHHHhhhhcCcCCccEEEeec
Q 046398          235 GLQGTISSIGL--ENLTSIKTIDLSLNFELGGPIPTSFVRLCELTSIDVSDVKLSQDLSQVLDILSACGASALESLVFSS  312 (794)
Q Consensus       235 ~l~~~i~~~~l--~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~l~~l~~~~~~~L~~L~L~~  312 (794)
                      .+++..+. .+  ..+++|++|+++ .+.+.+..|..+..+.+|+.+++.++.+.+.....+...  ...++|++|++++
T Consensus       156 ~l~~~~~~-~~~~~~~~~L~~L~L~-~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~--l~~~~L~~L~L~~  231 (680)
T 1ziw_A          156 KIQALKSE-ELDIFANSSLKKLELS-SNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLE--LANTSIRNLSLSN  231 (680)
T ss_dssp             CCCCBCHH-HHGGGTTCEESEEECT-TCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHH--HTTSCCCEEECTT
T ss_pred             cccccCHH-HhhccccccccEEECC-CCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHH--hhhccccEEEccC
Confidence            99865443 33  366899999999 668888888889888888888888887765443333211  1234788888888


Q ss_pred             ccccccccccccCCCC--CCEEEccCCcCcCCCCCCcCCCCCCCEEEccCCcccccCCccccCCCCCCeEeccCcccccc
Q 046398          313 SQISGHLTSQLGQFKS--LRTLSLDDNCISGPLPPALGDLSSLTRLDLSRNMLNGSIPLSLGKISHLEYLDLSNNKMNGT  390 (794)
Q Consensus       313 n~l~~~~~~~l~~l~~--L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~  390 (794)
                      |.+++..+..+..++.  |++|++++|.+++..|..++.+++|++|++++|.+++..|..+..+++|++|++++|...+.
T Consensus       232 n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~  311 (680)
T 1ziw_A          232 SQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQS  311 (680)
T ss_dssp             SCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC-
T ss_pred             CcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcc
Confidence            8888888887777654  88888888888877777888888888888888888887787888888888888887755432


Q ss_pred             --------cChhhhcCCCCCCEEECcCCcceeEcCCCCcCccccceEecccccCCCC--CCcccCC--CCCCCEEeccCC
Q 046398          391 --------LSEIHFVNLTKLTWFSASGNSLILQVNPNWVPPFQLKTLLLMSCHLGPQ--FPSWLHS--QKNLSVLDISNA  458 (794)
Q Consensus       391 --------~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~--~~~~l~~--l~~L~~L~Ls~n  458 (794)
                              +....+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+...  ....+..  .++|+.|++++|
T Consensus       312 ~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n  391 (680)
T 1ziw_A          312 ISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKN  391 (680)
T ss_dssp             -----CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTS
T ss_pred             cccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCC
Confidence                    2233567788888888888888877777777788888888888765332  1122222  257888888888


Q ss_pred             CCCCCcchhHHhccccceeccCcccCCCCCCCEEEccCCcccccCChhhhhcCCCCcEEEcccccccccCCccccCCCCC
Q 046398          459 RISDTIPRWFWNSIFQLSGIIPESFKNFSNLEVLNLGDNEFVGKIPTWMGEGFTSLLILILRSNKFDGFLPIQLCRLTSL  538 (794)
Q Consensus       459 ~l~~~~p~~~~~~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L  538 (794)
                      ++++               ..|..+..+++|+.|++++|++++.+|...+.++++|++|++++|++.+..+..|..+++|
T Consensus       392 ~l~~---------------~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L  456 (680)
T 1ziw_A          392 KISK---------------IESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSL  456 (680)
T ss_dssp             CCCE---------------ECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTC
T ss_pred             CCCe---------------EChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCccc
Confidence            7765               3455667777788888888877766765444567777788888877777777777777777


Q ss_pred             CEEEccCCcCc--ccCCchhhccccccccccccCCCCcccccccccccccceeeEEEEeccchhhcccccceeEEEcCCC
Q 046398          539 QILDVANNSLS--GTMPGCVNNFSAMATIDSSHQSNAMSYFEVTAYDCEVLEDASIVMKGSMVEYNSILNLVRIIDVSKN  616 (794)
Q Consensus       539 ~~L~Ls~N~l~--~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~LdLs~N  616 (794)
                      +.|++++|.+.  +.+|..+.++++|+.++.+.+...                      +........++.|++|++++|
T Consensus       457 ~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~----------------------~i~~~~~~~l~~L~~L~Ls~N  514 (680)
T 1ziw_A          457 QRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIA----------------------NINDDMLEGLEKLEILDLQHN  514 (680)
T ss_dssp             CEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCC----------------------CCCTTTTTTCTTCCEEECCSS
T ss_pred             ccchhccccccccccCCcccccCCCCCEEECCCCCCC----------------------cCChhhhccccccCEEeCCCC
Confidence            77777777776  456777777777777765543210                      111122234556677777777


Q ss_pred             ccccccC--------hhhhcccCCCEEecccccccccCCccccccCCCCEEeCCCCcCcccCcccccCCCCCCEEeCcCC
Q 046398          617 NFSGEIP--------MELTYLRGLQSLNLSHNIFTGQIPENIGNLISIESLDFSTNQLSSKISQSMSSLSFLNHLNVSNN  688 (794)
Q Consensus       617 ~l~~~ip--------~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N  688 (794)
                      ++++..+        ..++.+++|++|+|++|+++...+..|+++++|+.|+|++|++++..+..+..+++|+.|++++|
T Consensus       515 ~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N  594 (680)
T 1ziw_A          515 NLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKN  594 (680)
T ss_dssp             CCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred             CccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCC
Confidence            7765321        22566677777777777777332335677777777777777777666666667777777777777


Q ss_pred             cccccCCCC-C-ccCccCcccccCC
Q 046398          689 LLTGKIPSS-T-QLQSFDASCFVGN  711 (794)
Q Consensus       689 ~l~g~iP~~-~-~~~~~~~~~~~gn  711 (794)
                      ++++.+|.. . .+..+....+.||
T Consensus       595 ~l~~~~~~~~~~~~~~L~~l~l~~N  619 (680)
T 1ziw_A          595 LITSVEKKVFGPAFRNLTELDMRFN  619 (680)
T ss_dssp             CCCBCCHHHHHHHHTTCSEEECTTC
T ss_pred             cCCccChhHhcccccccCEEEccCC
Confidence            777665532 1 3445555556666

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=1.9e-54  Score=501.77  Aligned_cols=508  Identities=21%  Similarity=0.205  Sum_probs=369.8

Q ss_pred             cccceeecccccCCCCCCEEeCCCCCCCCCCCCcccCCCCCCCEEEcCCCCCCCCCcccccCCccccccccCcccccccc
Q 046398          103 SMLSGNVNPSLVDLKHLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRCLDLSWSEYALQV  182 (794)
Q Consensus       103 ~~l~g~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~~~~~~~~  182 (794)
                      +.+++..+..|.++++|++|+|++|+++++ .|..|+.+++|++|+|++|++++..|..|+++++|++|++++|.+.   
T Consensus        43 n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~---  118 (606)
T 3t6q_A           43 NVLPTIQNTTFSRLINLTFLDLTRCQIYWI-HEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGIS---  118 (606)
T ss_dssp             CCCSEECTTTSTTCTTCSEEECTTCCCCEE-CTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCS---
T ss_pred             CccCcCChhHhccCccceEEECCCCcccee-ChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcc---
Confidence            355555555666666666666666666653 4556666666666666666666656666666666666666666533   


Q ss_pred             ccccccccCCCCccCCCCCCCEEECcCCCCCCCCCccccCCCCCCeEeeeccCCCCCCCccccCCCCCCc--EEEccCCC
Q 046398          183 HSFSWLSGQIPNRLGNLTSLRHLDLSANKFNSTTAGWLSKFNHLEFLSLSSNGLQGTISSIGLENLTSIK--TIDLSLNF  260 (794)
Q Consensus       183 ~~~~~~~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~--~L~L~~~~  260 (794)
                             +..|..++++++|++|++++|.+++.....+..+++|++|++++|.+++..+. .++.+++|+  +|+++ ++
T Consensus       119 -------~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~l~L~l~-~n  189 (606)
T 3t6q_A          119 -------SIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKE-DMSSLQQATNLSLNLN-GN  189 (606)
T ss_dssp             -------CGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHH-HHHTTTTCCSEEEECT-TC
T ss_pred             -------cCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChh-hhhhhcccceeEEecC-CC
Confidence                   22244566666666666666666664433344466666666666666533333 556666666  56665 44


Q ss_pred             CCCCCCchhhhccCCCCEEEccCCCCCcchHHHHHhhhhcCcCCccEEEeeccccc-----ccccccccCCC--CCCEEE
Q 046398          261 ELGGPIPTSFVRLCELTSIDVSDVKLSQDLSQVLDILSACGASALESLVFSSSQIS-----GHLTSQLGQFK--SLRTLS  333 (794)
Q Consensus       261 ~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~-----~~~~~~l~~l~--~L~~L~  333 (794)
                      .+.+..|..+. ..+|+.|+++++.   ..+..+..+.     .++...+....+.     ...+..+..+.  +|+.|+
T Consensus       190 ~l~~~~~~~~~-~~~L~~L~l~~~~---~~~~~~~~l~-----~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~  260 (606)
T 3t6q_A          190 DIAGIEPGAFD-SAVFQSLNFGGTQ---NLLVIFKGLK-----NSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESIN  260 (606)
T ss_dssp             CCCEECTTTTT-TCEEEEEECTTCS---CHHHHHHHTT-----TCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEE
T ss_pred             ccCccChhHhh-hccccccccCCch---hHHHHhhhcc-----ccchhheechhhccccccccChhHhchhhcCceeEEE
Confidence            55544444433 2456666666654   2333333332     2222222111111     11122222222  688899


Q ss_pred             ccCCcCcCCCCCCcCCCCCCCEEEccCCcccccCCccccCCCCCCeEeccCcccccccChhhhcCCCCCCEEECcCCcce
Q 046398          334 LDDNCISGPLPPALGDLSSLTRLDLSRNMLNGSIPLSLGKISHLEYLDLSNNKMNGTLSEIHFVNLTKLTWFSASGNSLI  413 (794)
Q Consensus       334 L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~ls~n~l~  413 (794)
                      +++|.+++..+..+..+++|++|++++|.++ .+|..+..+++|++|++++|++.+..+ ..+..+++|+.|++++|.+.
T Consensus       261 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~~~  338 (606)
T 3t6q_A          261 LQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQ-ISASNFPSLTHLSIKGNTKR  338 (606)
T ss_dssp             CTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGG-GCGGGCTTCSEEECCSCSSC
T ss_pred             eecCccCccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCch-hhhhccCcCCEEECCCCCcc
Confidence            9999998877777888999999999999888 778888888999999999998885444 47888899999999999887


Q ss_pred             eEcCCC-CcCccccceEecccccCCCCC--CcccCCCCCCCEEeccCCCCCCCcchhHHhccccceeccCcccCCCCCCC
Q 046398          414 LQVNPN-WVPPFQLKTLLLMSCHLGPQF--PSWLHSQKNLSVLDISNARISDTIPRWFWNSIFQLSGIIPESFKNFSNLE  490 (794)
Q Consensus       414 ~~~~~~-~~~~~~L~~L~L~~n~l~~~~--~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~l~~~~p~~l~~l~~L~  490 (794)
                      +..+.. +..+++|++|++++|.+.+..  +..+..+++|++|++++|++.+               ..|..+..+++|+
T Consensus       339 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~---------------~~~~~~~~l~~L~  403 (606)
T 3t6q_A          339 LELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLS---------------LKTEAFKECPQLE  403 (606)
T ss_dssp             CBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEE---------------ECTTTTTTCTTCS
T ss_pred             cccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCc---------------CCHHHhcCCccCC
Confidence            666554 677888999999999887765  7778899999999999998765               4567788899999


Q ss_pred             EEEccCCcccccCChhhhhcCCCCcEEEcccccccccCCccccCCCCCCEEEccCCcCcccC---Cchhhcccccccccc
Q 046398          491 VLNLGDNEFVGKIPTWMGEGFTSLLILILRSNKFDGFLPIQLCRLTSLQILDVANNSLSGTM---PGCVNNFSAMATIDS  567 (794)
Q Consensus       491 ~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~---p~~~~~l~~L~~l~~  567 (794)
                      +|++++|++++..|...+..+++|+.|++++|++++..|..+..+++|++|++++|++++..   +..+..         
T Consensus       404 ~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~---------  474 (606)
T 3t6q_A          404 LLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQT---------  474 (606)
T ss_dssp             EEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGG---------
T ss_pred             eEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhcc---------
Confidence            99999999987766654457899999999999999888889999999999999999987621   223333         


Q ss_pred             ccCCCCcccccccccccccceeeEEEEeccchhhcccccceeEEEcCCCccccccChhhhcccCCCEEecccccccccCC
Q 046398          568 SHQSNAMSYFEVTAYDCEVLEDASIVMKGSMVEYNSILNLVRIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQIP  647 (794)
Q Consensus       568 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip  647 (794)
                                                           ++.|+.|++++|++++..|..++.+++|++|+|++|++++.+|
T Consensus       475 -------------------------------------l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~  517 (606)
T 3t6q_A          475 -------------------------------------LGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSI  517 (606)
T ss_dssp             -------------------------------------CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGG
T ss_pred             -------------------------------------CCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCCh
Confidence                                                 4455999999999999999999999999999999999999999


Q ss_pred             ccccccCCCCEEeCCCCcCcccCcccccCCCCCCEEeCcCCcccccCCC
Q 046398          648 ENIGNLISIESLDFSTNQLSSKISQSMSSLSFLNHLNVSNNLLTGKIPS  696 (794)
Q Consensus       648 ~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~  696 (794)
                      +.+.+++.| .|++++|++++.+|..+..+++|+.|++++|++.+..+.
T Consensus       518 ~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~  565 (606)
T 3t6q_A          518 EALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSN  565 (606)
T ss_dssp             GGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGGG
T ss_pred             hHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCCc
Confidence            999999999 999999999999999999999999999999999988764

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=4e-55  Score=506.92  Aligned_cols=507  Identities=19%  Similarity=0.235  Sum_probs=343.4

Q ss_pred             CCHHHHHHHHHHHhcCCCCC--------CCCCCCCCCCCCcce---eeeEecCCCCcEEEEEcCCCCCccccccchhhhh
Q 046398           31 CTDSEREALLKLKQDLKDPS--------NRLGSWVVDGDCCKW---AEVVCSNLTGHVLQLSLRNPFRNDLRYATTEYED   99 (794)
Q Consensus        31 ~~~~~~~~ll~~k~~~~~~~--------~~~~~W~~~~~~c~w---~gv~c~~~~~~v~~L~l~~~~~~~~~~~~~~~~~   99 (794)
                      ....|++||.++++++.++.        +..++|+.+.+||.|   .||+|+. .|||++|+|++               
T Consensus        27 ~~~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~~~~~~c~w~~~~GV~C~~-~~~V~~L~L~~---------------   90 (636)
T 4eco_A           27 EYIKDYLALKEIWDALNGKNWSQQGFGTQPGANWNFNKELDMWGAQPGVSLNS-NGRVTGLSLEG---------------   90 (636)
T ss_dssp             HHHHHHHHHHHHHHHTTGGGCCCCC------CCCCCSSCGGGTTCCTTEEECT-TCCEEEEECTT---------------
T ss_pred             hHHHHHHHHHHHHHHcCCCCcccCCcCCccCCCCCCCCCcccccCCCCeEEcC-CCCEEEEEecC---------------
Confidence            44579999999999986442        234589988999999   9999975 48999999998               


Q ss_pred             ccccccceeecccccCCCCCCEEeCCCCCCCCC-----------CCCcccCCCCCCCEEEcCCCCCCCCCcccccC-Ccc
Q 046398          100 YMRSMLSGNVNPSLVDLKHLTHLDLSGNDFQGI-----------RIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGN-LSN  167 (794)
Q Consensus       100 ~~~~~l~g~~~~~l~~l~~L~~L~Ls~n~l~~~-----------~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~-l~~  167 (794)
                         +.+.|.+|++++++++|++|+|++|.+...           .+|...  +.+|| +++++|.+.+.+|..+.. +.+
T Consensus        91 ---~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~l~-l~l~~~~l~~~~~~~~~~~~~~  164 (636)
T 4eco_A           91 ---FGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ--KQKMR-MHYQKTFVDYDPREDFSDLIKD  164 (636)
T ss_dssp             ---SCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHHHH-THHHHHHTCCCGGGGSCHHHHH
T ss_pred             ---cccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHH--HHHHH-hhHHHhhhccCchhhHHHHHHH
Confidence               489999999999999999999999976210           133333  45677 888888888877776663 334


Q ss_pred             ccccccCccccccccccccccccCCCCccCCCCCCCEEECc--CCCCCCCCCccccCCCCCCeEeeeccCCCCC------
Q 046398          168 LRCLDLSWSEYALQVHSFSWLSGQIPNRLGNLTSLRHLDLS--ANKFNSTTAGWLSKFNHLEFLSLSSNGLQGT------  239 (794)
Q Consensus       168 L~~L~Ls~~~~~~~~~~~~~~~~~lp~~l~~l~~L~~L~Ls--~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~------  239 (794)
                      +..+++....+.                ......++.+.+.  .|++++ +|..++++++|++|++++|.+++.      
T Consensus       165 l~~~~l~~~~~~----------------~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~  227 (636)
T 4eco_A          165 CINSDPQQKSIK----------------KSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAW  227 (636)
T ss_dssp             HHHHCTTSCCCC----------------CCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSC
T ss_pred             HhhcCccccccc----------------cccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccc
Confidence            444444321111                1112223333333  466777 677777888888888888887764      


Q ss_pred             -----------CCccccC--CCCCCcEEEccCCCCCCCCCchhhhccCCCCEEEccCCC-CCc-chHHHHHhhh-hcCcC
Q 046398          240 -----------ISSIGLE--NLTSIKTIDLSLNFELGGPIPTSFVRLCELTSIDVSDVK-LSQ-DLSQVLDILS-ACGAS  303 (794)
Q Consensus       240 -----------i~~~~l~--~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~-l~~-~~~~~l~~l~-~~~~~  303 (794)
                                 +|. .++  ++++|++|+++ ++.+.+.+|..+.++++|+.|++++|+ +++ .+|..+..+. ...++
T Consensus       228 ~~~~~~~~~~~ip~-~l~~~~l~~L~~L~L~-~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~  305 (636)
T 4eco_A          228 ENENSEYAQQYKTE-DLKWDNLKDLTDVEVY-NCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGE  305 (636)
T ss_dssp             SCTTSHHHHHHTTS-CCCGGGCTTCCEEEEE-CCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGG
T ss_pred             cccccchhcccCch-hhhhcccCCCCEEEec-CCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCC
Confidence                       666 666  88888888888 667778888888888888888888888 887 7888777651 01112


Q ss_pred             CccEEEeecccccccccc--cccCCCCCCEEEccCCcCcCCCCCCcCCCCCCCEEEccCCcccccCCccccCCCC-CCeE
Q 046398          304 ALESLVFSSSQISGHLTS--QLGQFKSLRTLSLDDNCISGPLPPALGDLSSLTRLDLSRNMLNGSIPLSLGKISH-LEYL  380 (794)
Q Consensus       304 ~L~~L~L~~n~l~~~~~~--~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~-L~~L  380 (794)
                      +|++|++++|+++ .+|.  .++.+++|++|++++|.++|.+| .+..+++|++|++++|.++ .+|..+..+++ |++|
T Consensus       306 ~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L  382 (636)
T 4eco_A          306 KIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENL  382 (636)
T ss_dssp             TCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEE
T ss_pred             CCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEE
Confidence            6666666666666 4555  56666666666666666665565 5666666666666666665 55555666665 6666


Q ss_pred             eccCcccccccChhhhcCCCCCCEEECcCCcceeEcCCCCcCccccceEecccccCCCCCCcccCC--CCCCCEEeccCC
Q 046398          381 DLSNNKMNGTLSEIHFVNLTKLTWFSASGNSLILQVNPNWVPPFQLKTLLLMSCHLGPQFPSWLHS--QKNLSVLDISNA  458 (794)
Q Consensus       381 ~Ls~N~l~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~--l~~L~~L~Ls~n  458 (794)
                      ++++|.++ .+|.                                                 .+..  +++|++|++++|
T Consensus       383 ~Ls~N~l~-~lp~-------------------------------------------------~~~~~~l~~L~~L~Ls~N  412 (636)
T 4eco_A          383 SFAHNKLK-YIPN-------------------------------------------------IFDAKSVSVMSAIDFSYN  412 (636)
T ss_dssp             ECCSSCCS-SCCS-------------------------------------------------CCCTTCSSCEEEEECCSS
T ss_pred             EccCCcCc-ccch-------------------------------------------------hhhhcccCccCEEECcCC
Confidence            66666554 3332                                                 2222  124555555555


Q ss_pred             CCCCCcchhHHhccccceeccCcccCCCCCCCEEEccCCcccccCChhhhhcCCCCcEEEcccccccccCCcc-ccC---
Q 046398          459 RISDTIPRWFWNSIFQLSGIIPESFKNFSNLEVLNLGDNEFVGKIPTWMGEGFTSLLILILRSNKFDGFLPIQ-LCR---  534 (794)
Q Consensus       459 ~l~~~~p~~~~~~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~-~~~---  534 (794)
                      ++++.+|.++..        .......+++|++|++++|+++ .+|..++..+++|+.|+|++|+++ .+|.. +..   
T Consensus       413 ~l~~~~p~~l~~--------~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~  482 (636)
T 4eco_A          413 EIGSVDGKNFDP--------LDPTPFKGINVSSINLSNNQIS-KFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENE  482 (636)
T ss_dssp             CTTTTTTCSSCT--------TCSSCCCCCCEEEEECCSSCCC-SCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTE
T ss_pred             cCCCcchhhhcc--------cccccccCCCCCEEECcCCccC-cCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccc
Confidence            555432221100        0000114556777777777776 666666655677777777777776 34433 222   


Q ss_pred             ----CCCCCEEEccCCcCcccCCchhh--ccccccccccccCCCCcccccccccccccceeeEEEEeccchhhcccccce
Q 046398          535 ----LTSLQILDVANNSLSGTMPGCVN--NFSAMATIDSSHQSNAMSYFEVTAYDCEVLEDASIVMKGSMVEYNSILNLV  608 (794)
Q Consensus       535 ----l~~L~~L~Ls~N~l~~~~p~~~~--~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L  608 (794)
                          +++|++|++++|+++ .+|..+.  .+++                                              |
T Consensus       483 ~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~----------------------------------------------L  515 (636)
T 4eco_A          483 NFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPY----------------------------------------------L  515 (636)
T ss_dssp             ECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTT----------------------------------------------C
T ss_pred             cccccCCccEEECcCCcCC-ccChhhhhccCCC----------------------------------------------c
Confidence                237888888888877 5665543  3333                                              3


Q ss_pred             eEEEcCCCccccccChhhhcccCCCEEec------ccccccccCCccccccCCCCEEeCCCCcCcccCcccccCCCCCCE
Q 046398          609 RIIDVSKNNFSGEIPMELTYLRGLQSLNL------SHNIFTGQIPENIGNLISIESLDFSTNQLSSKISQSMSSLSFLNH  682 (794)
Q Consensus       609 ~~LdLs~N~l~~~ip~~l~~l~~L~~L~L------s~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~  682 (794)
                      +.|++++|++++ +|..+..+++|+.|+|      ++|++.+.+|..++++++|+.|+|++|++ +.+|..+.  ++|+.
T Consensus       516 ~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~~L~~  591 (636)
T 4eco_A          516 VGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT--PNISV  591 (636)
T ss_dssp             CEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--TTCCE
T ss_pred             CEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh--CcCCE
Confidence            778888888886 7888888888888888      56788889999999999999999999999 67887765  78999


Q ss_pred             EeCcCCcccc
Q 046398          683 LNVSNNLLTG  692 (794)
Q Consensus       683 L~ls~N~l~g  692 (794)
                      |++++|++..
T Consensus       592 L~Ls~N~l~~  601 (636)
T 4eco_A          592 LDIKDNPNIS  601 (636)
T ss_dssp             EECCSCTTCE
T ss_pred             EECcCCCCcc
Confidence            9999998774

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=7.3e-54  Score=513.34  Aligned_cols=551  Identities=22%  Similarity=0.241  Sum_probs=416.0

Q ss_pred             cceeeeEecCCCCcEEEEEcCCCCCccccccchhhhhccccccceeecccccCCCCCCEEeCCCCCCCCCCC-CcccCCC
Q 046398           63 CKWAEVVCSNLTGHVLQLSLRNPFRNDLRYATTEYEDYMRSMLSGNVNPSLVDLKHLTHLDLSGNDFQGIRI-PKYLGSL  141 (794)
Q Consensus        63 c~w~gv~c~~~~~~v~~L~l~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~l~~l~~L~~L~Ls~n~l~~~~~-p~~~~~l  141 (794)
                      |+|.+|.+  ...+++.|+|++                  +.+++..+..+.++++|++|+|++|...+. + |..|+++
T Consensus        14 ~~L~~vP~--lp~~l~~LdLs~------------------N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~-i~~~~f~~L   72 (844)
T 3j0a_A           14 CNLTQVPQ--VLNTTERLLLSF------------------NYIRTVTASSFPFLEQLQLLELGSQYTPLT-IDKEAFRNL   72 (844)
T ss_dssp             CCSSCCCS--SCTTCCEEEEES------------------CCCCEECSSSCSSCCSCSEEEECTTCCCCE-ECTTTTSSC
T ss_pred             CCCCCCCC--CCCCcCEEECCC------------------CcCCccChhHCcccccCeEEeCCCCCCccc-cCHHHhcCC
Confidence            45666665  356778888877                  477887888899999999999999965543 4 7778999


Q ss_pred             CCCCEEEcCCCCCCCCCcccccCCccccccccCccccccccccccccccCCCCc--cCCCCCCCEEECcCCCCCCCCC-c
Q 046398          142 KNLRYLNLSGAEFAGIIPHQLGNLSNLRCLDLSWSEYALQVHSFSWLSGQIPNR--LGNLTSLRHLDLSANKFNSTTA-G  218 (794)
Q Consensus       142 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~~~~lp~~--l~~l~~L~~L~Ls~n~l~~~~~-~  218 (794)
                      ++|++|+|++|.+++..|+.|+++++|++|+|++|.+          .+.+|..  +.++++|++|++++|.+++..+ .
T Consensus        73 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l----------~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~  142 (844)
T 3j0a_A           73 PNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGL----------SDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHP  142 (844)
T ss_dssp             TTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCC----------SSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCG
T ss_pred             CCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCC----------CcccccCccccccCCCCEEECCCCcccccccch
Confidence            9999999999999988899999999999999988874          4445554  8889999999999999988765 5


Q ss_pred             cccCCCCCCeEeeeccCCCCCCCccccCCC--CCCcEEEccCCCCCCCCCchhhhccCC------CCEEEccCCCCCcch
Q 046398          219 WLSKFNHLEFLSLSSNGLQGTISSIGLENL--TSIKTIDLSLNFELGGPIPTSFVRLCE------LTSIDVSDVKLSQDL  290 (794)
Q Consensus       219 ~l~~l~~L~~L~L~~n~l~~~i~~~~l~~l--~~L~~L~L~~~~~~~~~~~~~l~~l~~------L~~L~l~~~~l~~~~  290 (794)
                      .++++++|++|++++|.+++..+. .+..+  ++|+.|+++ .+.+.+..|..+..+.+      |+.|++++|.+++..
T Consensus       143 ~~~~L~~L~~L~Ls~N~i~~~~~~-~l~~l~~~~L~~L~L~-~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~  220 (844)
T 3j0a_A          143 SFGKLNSLKSIDFSSNQIFLVCEH-ELEPLQGKTLSFFSLA-ANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDI  220 (844)
T ss_dssp             GGGTCSSCCEEEEESSCCCCCCSG-GGHHHHHCSSCCCEEC-CSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTT
T ss_pred             hHhhCCCCCEEECCCCcCCeeCHH-HcccccCCccceEECC-CCccccccccchhhcCCccccCceeEEecCCCcCchhH
Confidence            788999999999999998876665 67666  889999998 66777777776666555      899999999888777


Q ss_pred             HHHHHhhhhcCcCCccEEEeecc---------cccccccccccCC--CCCCEEEccCCcCcCCCCCCcCCCCCCCEEEcc
Q 046398          291 SQVLDILSACGASALESLVFSSS---------QISGHLTSQLGQF--KSLRTLSLDDNCISGPLPPALGDLSSLTRLDLS  359 (794)
Q Consensus       291 ~~~l~~l~~~~~~~L~~L~L~~n---------~l~~~~~~~l~~l--~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls  359 (794)
                      +..+....  ....++.+.+..+         .+.+.....+..+  ++|+.|++++|.+.+..|..+..+++|++|+++
T Consensus       221 ~~~~~~~l--~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~  298 (844)
T 3j0a_A          221 TGNFSNAI--SKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLA  298 (844)
T ss_dssp             TSGGGGTS--CSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEE
T ss_pred             HHHHHhhc--CcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECC
Confidence            66554321  2236777777633         3333333444443  678888888888887778888888888888888


Q ss_pred             CCcccccCCccccCCCCCCeEeccCcccccccChhhhcCCCCCCEEECcCCcceeEcCCCCcCccccceEecccccCCCC
Q 046398          360 RNMLNGSIPLSLGKISHLEYLDLSNNKMNGTLSEIHFVNLTKLTWFSASGNSLILQVNPNWVPPFQLKTLLLMSCHLGPQ  439 (794)
Q Consensus       360 ~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~  439 (794)
                      +|.+++..|..+..+++|++|++++|.+.+..+. .+..+++|+.|++++|.+....+..+..+++|+.|++++|.+++.
T Consensus       299 ~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i  377 (844)
T 3j0a_A          299 YNKINKIADEAFYGLDNLQVLNLSYNLLGELYSS-NFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI  377 (844)
T ss_dssp             SCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSC-SCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCC
T ss_pred             CCcCCCCChHHhcCCCCCCEEECCCCCCCccCHH-HhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcc
Confidence            8888877788888888888888888888744443 788888888888888888777777777788888888888877642


Q ss_pred             CCcccCCCCCCCEEeccCCCCCCCcchhHHhccccceeccCcccCCCCCCCEEEccCCcccccCChhhhhcCCCCcEEEc
Q 046398          440 FPSWLHSQKNLSVLDISNARISDTIPRWFWNSIFQLSGIIPESFKNFSNLEVLNLGDNEFVGKIPTWMGEGFTSLLILIL  519 (794)
Q Consensus       440 ~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L  519 (794)
                           ..+++|+.|++++|+++.                +|..   ..+++.|++++|++++.-.......+++|+.|+|
T Consensus       378 -----~~~~~L~~L~l~~N~l~~----------------l~~~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~L  433 (844)
T 3j0a_A          378 -----HFIPSIPDIFLSGNKLVT----------------LPKI---NLTANLIHLSENRLENLDILYFLLRVPHLQILIL  433 (844)
T ss_dssp             -----SSCCSCSEEEEESCCCCC----------------CCCC---CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEE
T ss_pred             -----cCCCCcchhccCCCCccc----------------cccc---ccccceeecccCccccCchhhhhhcCCccceeeC
Confidence                 236778888888888774                3322   4578888888888874222222236788888888


Q ss_pred             ccccccccCCc-cccCCCCCCEEEccCCcCcccCCchhhccccccccccccCCCCcccccccccccccceeeEEEEeccc
Q 046398          520 RSNKFDGFLPI-QLCRLTSLQILDVANNSLSGTMPGCVNNFSAMATIDSSHQSNAMSYFEVTAYDCEVLEDASIVMKGSM  598 (794)
Q Consensus       520 ~~n~l~~~~p~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  598 (794)
                      ++|++++..+. .+..+++|+.|++++|.+++..+...                                         .
T Consensus       434 s~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~-----------------------------------------~  472 (844)
T 3j0a_A          434 NQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETEL-----------------------------------------C  472 (844)
T ss_dssp             ESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCC-----------------------------------------C
T ss_pred             CCCcccccccccccccCCccccccCCCCcccccccccc-----------------------------------------c
Confidence            88888765433 35567888888888888864332110                                         0


Q ss_pred             hhhcccccceeEEEcCCCccccccChhhhcccCCCEEecccccccccCCccccccCCCCEEeCCCCcCcccCcccccCCC
Q 046398          599 VEYNSILNLVRIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQIPENIGNLISIESLDFSTNQLSSKISQSMSSLS  678 (794)
Q Consensus       599 ~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~  678 (794)
                      ......++.|+.|||++|++++..|..+..+++|+.|+|++|++++..|..+.  ++|+.|||++|++++.+|..+   .
T Consensus       473 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~---~  547 (844)
T 3j0a_A          473 WDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVF---V  547 (844)
T ss_dssp             SSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCC---S
T ss_pred             hhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhHh---C
Confidence            01122355679999999999999998999999999999999999977666665  899999999999999999775   4


Q ss_pred             CCCEEeCcCCcccccCCCCCccCccCcccccCC-CcCCCCCC-CCCC
Q 046398          679 FLNHLNVSNNLLTGKIPSSTQLQSFDASCFVGN-NLCGPPLP-SCTE  723 (794)
Q Consensus       679 ~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gn-~lcg~~~~-~c~~  723 (794)
                      +|+.+++++|++.+..+..    .|......+| .++|.+.. .|..
T Consensus       548 ~L~~l~l~~Np~~C~c~~~----~f~~~~~~~~~~~~~~~~~~~C~~  590 (844)
T 3j0a_A          548 SLSVLDITHNKFICECELS----TFINWLNHTNVTIAGPPADIYCVY  590 (844)
T ss_dssp             SCCEEEEEEECCCCSSSCC----SHHHHHHHTTTTTCCCGGGCCCSS
T ss_pred             CcCEEEecCCCcccccccH----HHHHHHHhcCcccccccccCccCC
Confidence            7899999999999887643    2222222345 67776655 6754

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=3.2e-53  Score=498.22  Aligned_cols=557  Identities=21%  Similarity=0.241  Sum_probs=459.9

Q ss_pred             CcEEEEEcCCCCCccccccchhhhhccccccceeecccccCCCCCCEEeCCCCCCCCCCCCc-ccCCCCCCCEEEcCCCC
Q 046398           75 GHVLQLSLRNPFRNDLRYATTEYEDYMRSMLSGNVNPSLVDLKHLTHLDLSGNDFQGIRIPK-YLGSLKNLRYLNLSGAE  153 (794)
Q Consensus        75 ~~v~~L~l~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~-~~~~l~~L~~L~Ls~n~  153 (794)
                      .+++.|++++                  +.+.+..|..+.++++|++|+|++|.++.  +|. .|+.+++|++|++++|+
T Consensus        49 ~~L~~L~Ls~------------------n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--l~~~~~~~l~~L~~L~L~~n~  108 (680)
T 1ziw_A           49 SQLTSLDVGF------------------NTISKLEPELCQKLPMLKVLNLQHNELSQ--LSDKTFAFCTNLTELHLMSNS  108 (680)
T ss_dssp             TTCSEEECCS------------------SCCCCCCTTHHHHCTTCCEEECCSSCCCC--CCTTTTTTCTTCSEEECCSSC
T ss_pred             CcCcEEECCC------------------CccCccCHHHHhcccCcCEEECCCCccCc--cChhhhccCCCCCEEECCCCc
Confidence            3567777776                  47888888889999999999999999995  454 69999999999999999


Q ss_pred             CCCCCcccccCCccccccccCccccccccccccccccCCCCccCCCCCCCEEECcCCCCCCCCCcccc--CCCCCCeEee
Q 046398          154 FAGIIPHQLGNLSNLRCLDLSWSEYALQVHSFSWLSGQIPNRLGNLTSLRHLDLSANKFNSTTAGWLS--KFNHLEFLSL  231 (794)
Q Consensus       154 l~~~~p~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~~~l~--~l~~L~~L~L  231 (794)
                      +++..|..|+++++|++|++++|.          +.+..|..++++++|++|++++|.+++..+..+.  .+++|++|++
T Consensus       109 l~~~~~~~~~~l~~L~~L~Ls~n~----------l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L  178 (680)
T 1ziw_A          109 IQKIKNNPFVKQKNLITLDLSHNG----------LSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLEL  178 (680)
T ss_dssp             CCCCCSCTTTTCTTCCEEECCSSC----------CSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEEC
T ss_pred             cCccChhHccccCCCCEEECCCCc----------ccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEEC
Confidence            998888899999999999999887          4456778899999999999999999998887664  5689999999


Q ss_pred             eccCCCCCCCccccCCCCCCcEEEccCCCCCCCCCchhhh---ccCCCCEEEccCCCCCcchHHHHHhhhhcCcCCccEE
Q 046398          232 SSNGLQGTISSIGLENLTSIKTIDLSLNFELGGPIPTSFV---RLCELTSIDVSDVKLSQDLSQVLDILSACGASALESL  308 (794)
Q Consensus       232 ~~n~l~~~i~~~~l~~l~~L~~L~L~~~~~~~~~~~~~l~---~l~~L~~L~l~~~~l~~~~~~~l~~l~~~~~~~L~~L  308 (794)
                      ++|.+++..+. .+..+++|+.+++. ++.+.+.....+.   ..++|+.|++++|.+.+..+..+..+.   .++|++|
T Consensus       179 ~~n~l~~~~~~-~~~~l~~L~~L~l~-~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~---~~~L~~L  253 (680)
T 1ziw_A          179 SSNQIKEFSPG-CFHAIGRLFGLFLN-NVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLK---WTNLTML  253 (680)
T ss_dssp             TTCCCCCBCTT-GGGGSSEECEEECT-TCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGG---GSCCCEE
T ss_pred             CCCcccccChh-hhhhhhhhhhhhcc-ccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccC---cCCCCEE
Confidence            99999976666 88999999999998 4444332222211   347899999999999998887776654   1259999


Q ss_pred             EeecccccccccccccCCCCCCEEEccCCcCcCCCCCCcCCCCCCCEEEccCCcccc-----cCCc----cccCCCCCCe
Q 046398          309 VFSSSQISGHLTSQLGQFKSLRTLSLDDNCISGPLPPALGDLSSLTRLDLSRNMLNG-----SIPL----SLGKISHLEY  379 (794)
Q Consensus       309 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~-----~~p~----~l~~l~~L~~  379 (794)
                      ++++|.+++..+..++.+++|++|++++|.+++..|..+.++++|++|++++|...+     .+|.    .+..+++|++
T Consensus       254 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~  333 (680)
T 1ziw_A          254 DLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEH  333 (680)
T ss_dssp             ECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCE
T ss_pred             ECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCE
Confidence            999999999999999999999999999999999889999999999999999876553     2332    6788999999


Q ss_pred             EeccCcccccccChhhhcCCCCCCEEECcCCccee--EcCCCCcC--ccccceEecccccCCCCCCcccCCCCCCCEEec
Q 046398          380 LDLSNNKMNGTLSEIHFVNLTKLTWFSASGNSLIL--QVNPNWVP--PFQLKTLLLMSCHLGPQFPSWLHSQKNLSVLDI  455 (794)
Q Consensus       380 L~Ls~N~l~~~~~~~~~~~l~~L~~L~ls~n~l~~--~~~~~~~~--~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L  455 (794)
                      |++++|.+.+. +...|.++++|+.|++++|.+..  .....+..  ..+|+.|++++|.+.+..|..+..+++|+.|++
T Consensus       334 L~l~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  412 (680)
T 1ziw_A          334 LNMEDNDIPGI-KSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDL  412 (680)
T ss_dssp             EECCSCCBCCC-CTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred             EECCCCccCCC-ChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeC
Confidence            99999999864 44478999999999999997543  22233332  258999999999999999999999999999999


Q ss_pred             cCCCCCCCcchhHHhccccceeccCcccCCCCCCCEEEccCCcccccCChhhhhcCCCCcEEEccccccc--ccCCcccc
Q 046398          456 SNARISDTIPRWFWNSIFQLSGIIPESFKNFSNLEVLNLGDNEFVGKIPTWMGEGFTSLLILILRSNKFD--GFLPIQLC  533 (794)
Q Consensus       456 s~n~l~~~~p~~~~~~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~--~~~p~~~~  533 (794)
                      ++|++++.+|              +..+.++++|++|++++|++++..+..+. .+++|+.|++++|.+.  +.+|..+.
T Consensus       413 ~~N~l~~~~~--------------~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~p~~~~  477 (680)
T 1ziw_A          413 GLNEIGQELT--------------GQEWRGLENIFEIYLSYNKYLQLTRNSFA-LVPSLQRLMLRRVALKNVDSSPSPFQ  477 (680)
T ss_dssp             CSSCCEEECC--------------SGGGTTCTTCCEEECCSCSEEECCTTTTT-TCTTCCEEECTTSCCBCTTCSSCTTT
T ss_pred             CCCcCccccC--------------cccccCcccccEEecCCCCcceeChhhhh-cCcccccchhccccccccccCCcccc
Confidence            9998875322              25678899999999999999855555444 7999999999999987  56788999


Q ss_pred             CCCCCCEEEccCCcCcccCCchhhccccccccccccCCCCcccccccccccccceeeEEEEeccchhhcccccceeEEEc
Q 046398          534 RLTSLQILDVANNSLSGTMPGCVNNFSAMATIDSSHQSNAMSYFEVTAYDCEVLEDASIVMKGSMVEYNSILNLVRIIDV  613 (794)
Q Consensus       534 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~LdL  613 (794)
                      .+++|++|++++|++++..|..+.++++|+.++.+.+.... +.....             .+........++.|+.|++
T Consensus       478 ~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~-------------~~~~~~~~~~l~~L~~L~L  543 (680)
T 1ziw_A          478 PLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLAR-LWKHAN-------------PGGPIYFLKGLSHLHILNL  543 (680)
T ss_dssp             TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGG-GGSTTS-------------TTSCCCTTTTCTTCCEEEC
T ss_pred             cCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccc-cchhhc-------------cCCcchhhcCCCCCCEEEC
Confidence            99999999999999998888889999999988776543110 000000             0001123456788999999


Q ss_pred             CCCccccccChhhhcccCCCEEecccccccccCCccccccCCCCEEeCCCCcCcccCccccc-CCCCCCEEeCcCCcccc
Q 046398          614 SKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQIPENIGNLISIESLDFSTNQLSSKISQSMS-SLSFLNHLNVSNNLLTG  692 (794)
Q Consensus       614 s~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~-~l~~L~~L~ls~N~l~g  692 (794)
                      ++|+++...+..|.++++|+.|+|++|++++..+..|.++++|+.|+|++|++++..|..+. .+++|+.+++++|++.+
T Consensus       544 ~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c  623 (680)
T 1ziw_A          544 ESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDC  623 (680)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCB
T ss_pred             CCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCccc
Confidence            99999954445689999999999999999976667789999999999999999999888887 78999999999999999


Q ss_pred             cCCC
Q 046398          693 KIPS  696 (794)
Q Consensus       693 ~iP~  696 (794)
                      ..+.
T Consensus       624 ~c~~  627 (680)
T 1ziw_A          624 TCES  627 (680)
T ss_dssp             CCCC
T ss_pred             CCcc
Confidence            8775

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=2.9e-53  Score=491.91  Aligned_cols=503  Identities=19%  Similarity=0.177  Sum_probs=377.4

Q ss_pred             cccceeecccccCCCCCCEEeCCCCCCCCCCCCcccCCCCCCCEEEcCCCCCCCCCcccccCCccccccccCcccccccc
Q 046398          103 SMLSGNVNPSLVDLKHLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRCLDLSWSEYALQV  182 (794)
Q Consensus       103 ~~l~g~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~~~~~~~~  182 (794)
                      +.+.+..+..+.++++|++|+|++|.++++ .|..|+++++|++|+|++|.+++..|+.|+++++|++|++++|.+.   
T Consensus        42 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i-~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~---  117 (606)
T 3vq2_A           42 NPLKILKSYSFSNFSELQWLDLSRCEIETI-EDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLA---  117 (606)
T ss_dssp             SCCCEECTTTTTTCTTCCEEECTTCCCCEE-CTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCC---
T ss_pred             CCcCEeChhhccCCccCcEEeCCCCccccc-CHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccc---
Confidence            467776666788888888888888888764 5667788888888888888887777778888888888888777643   


Q ss_pred             ccccccccCCCCccCCCCCCCEEECcCCCCCC-CCCccccCCCCCCeEeeeccCCCCCCCccccCCCCCCc----EEEcc
Q 046398          183 HSFSWLSGQIPNRLGNLTSLRHLDLSANKFNS-TTAGWLSKFNHLEFLSLSSNGLQGTISSIGLENLTSIK----TIDLS  257 (794)
Q Consensus       183 ~~~~~~~~~lp~~l~~l~~L~~L~Ls~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~----~L~L~  257 (794)
                             +..|..++++++|++|++++|.+++ .+|..++++++|++|++++|.+++..+. .++.+++|+    +|+++
T Consensus       118 -------~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~~l~~L~l~  189 (606)
T 3vq2_A          118 -------SLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVN-DLQFLRENPQVNLSLDMS  189 (606)
T ss_dssp             -------CSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTT-TTHHHHHCTTCCCEEECT
T ss_pred             -------cccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChh-hhhhhhccccccceeecc
Confidence                   3334667788888888888888776 4577788888888888888887754443 555555443    77887


Q ss_pred             CCCCCCCCCchhhhccCCCCEEEccCCCCCc-chHHHHHhhhhcCcCCccEEEeeccccccc------ccccccCCC--C
Q 046398          258 LNFELGGPIPTSFVRLCELTSIDVSDVKLSQ-DLSQVLDILSACGASALESLVFSSSQISGH------LTSQLGQFK--S  328 (794)
Q Consensus       258 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~-~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~------~~~~l~~l~--~  328 (794)
                       .+.+.+..+..+.. .+|+.|++++|.+.+ ..+..+..+.     .++.+++..+.+.+.      .+..+..+.  .
T Consensus       190 -~n~l~~~~~~~~~~-~~L~~L~L~~n~~~~~~~~~~~~~l~-----~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~  262 (606)
T 3vq2_A          190 -LNPIDFIQDQAFQG-IKLHELTLRGNFNSSNIMKTCLQNLA-----GLHVHRLILGEFKDERNLEIFEPSIMEGLCDVT  262 (606)
T ss_dssp             -TCCCCEECTTTTTT-CEEEEEEEESCCSCHHHHHHHHHTTT-----TCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSE
T ss_pred             -CCCcceeCcccccC-ceeeeeeccCCccchhHHHHHhcccc-----ccccccccccccccCCcccccChHHhhhhhhcc
Confidence             55555444444433 378888888887763 4455555555     677766654433221      111122221  3


Q ss_pred             CCEEEc-cCCcCcCCCCCCcCCCCCCCEEEccCCcccccCCccccCCCCCCeEeccCcccccccChhhhcCCCCCCEEEC
Q 046398          329 LRTLSL-DDNCISGPLPPALGDLSSLTRLDLSRNMLNGSIPLSLGKISHLEYLDLSNNKMNGTLSEIHFVNLTKLTWFSA  407 (794)
Q Consensus       329 L~~L~L-~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~l  407 (794)
                      ++.+++ ..+.+.+..|. +..+++|++|++++|.+. .+| .+..+++|++|++++|.+ +.+|.  + .+++|+.|++
T Consensus       263 l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~-~l~-~l~~~~~L~~L~l~~n~l-~~lp~--~-~l~~L~~L~l  335 (606)
T 3vq2_A          263 IDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIK-YLE-DVPKHFKWQSLSIIRCQL-KQFPT--L-DLPFLKSLTL  335 (606)
T ss_dssp             EEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCC-CCC-CCCTTCCCSEEEEESCCC-SSCCC--C-CCSSCCEEEE
T ss_pred             Hhheeccccccccccccc-cccCCCCCEEEecCccch-hhh-hccccccCCEEEcccccC-ccccc--C-CCCccceeec
Confidence            455666 56677766666 777888888888888886 455 677888888888888888 57773  3 7888888888


Q ss_pred             cCCcceeEcCCCCcCccccceEecccccCCCC--CCcccCCCCCCCEEeccCCCCCCCcchhHHhccccceeccCcccCC
Q 046398          408 SGNSLILQVNPNWVPPFQLKTLLLMSCHLGPQ--FPSWLHSQKNLSVLDISNARISDTIPRWFWNSIFQLSGIIPESFKN  485 (794)
Q Consensus       408 s~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~--~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~l~~~~p~~l~~  485 (794)
                      ++|......  .+..+++|++|++++|.+.+.  .+..+..+++|++|++++|.+++                +|..+..
T Consensus       336 ~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~----------------~~~~~~~  397 (606)
T 3vq2_A          336 TMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII----------------MSANFMG  397 (606)
T ss_dssp             ESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE----------------ECCCCTT
T ss_pred             cCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc----------------chhhccC
Confidence            888655444  455677888888888887765  37778888889999999888664                5567888


Q ss_pred             CCCCCEEEccCCcccccCChhhhhcCCCCcEEEcccccccccCCccccCCCCCCEEEccCCcCcc-cCCchhhccccccc
Q 046398          486 FSNLEVLNLGDNEFVGKIPTWMGEGFTSLLILILRSNKFDGFLPIQLCRLTSLQILDVANNSLSG-TMPGCVNNFSAMAT  564 (794)
Q Consensus       486 l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~~  564 (794)
                      +++|+.|++++|++.+..|...+..+++|+.|++++|++.+..|..+..+++|++|++++|++++ .+|..+..+++|  
T Consensus       398 l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L--  475 (606)
T 3vq2_A          398 LEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNL--  475 (606)
T ss_dssp             CTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTC--
T ss_pred             CCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCC--
Confidence            88899999999988866663334478889999999999888888888888999999999998887 366666555444  


Q ss_pred             cccccCCCCcccccccccccccceeeEEEEeccchhhcccccceeEEEcCCCccccccChhhhcccCCCEEecccccccc
Q 046398          565 IDSSHQSNAMSYFEVTAYDCEVLEDASIVMKGSMVEYNSILNLVRIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTG  644 (794)
Q Consensus       565 l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~  644 (794)
                                                                  +.|++++|++++..|..++.+++|++|+|++|++++
T Consensus       476 --------------------------------------------~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~  511 (606)
T 3vq2_A          476 --------------------------------------------TFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLF  511 (606)
T ss_dssp             --------------------------------------------CEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSC
T ss_pred             --------------------------------------------CEEECCCCcCCccChhhhcccccCCEEECCCCcCCC
Confidence                                                        889999999999999999999999999999999998


Q ss_pred             cCCccccccCCCCEEeCCCCcCcccCcccccCCC-CCCEEeCcCCcccccCCC
Q 046398          645 QIPENIGNLISIESLDFSTNQLSSKISQSMSSLS-FLNHLNVSNNLLTGKIPS  696 (794)
Q Consensus       645 ~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~-~L~~L~ls~N~l~g~iP~  696 (794)
                      .+|..++++++|+.|+|++|+++ .+|..+..++ +|++|++++|++.+..|.
T Consensus       512 ~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~~  563 (606)
T 3vq2_A          512 LDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICEH  563 (606)
T ss_dssp             EEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSSTT
T ss_pred             cCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCcc
Confidence            88999999999999999999998 5777788887 599999999999988775

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=1.2e-51  Score=478.32  Aligned_cols=519  Identities=20%  Similarity=0.183  Sum_probs=430.0

Q ss_pred             eecccccCCCCCCEEeCCCCCCCCCCCCcccCCCCCCCEEEcCCCCCCCCCcccccCCccccccccCccccccccccccc
Q 046398          108 NVNPSLVDLKHLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRCLDLSWSEYALQVHSFSW  187 (794)
Q Consensus       108 ~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~~~~~~~~~~~~~  187 (794)
                      .+|..+..  ++++|+|++|.++++ .|..|+++++|++|+|++|++++..|..|+++++|++|++++|.+         
T Consensus        26 ~iP~~l~~--~l~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l---------   93 (606)
T 3t6q_A           26 EIPGTLPN--STECLEFSFNVLPTI-QNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPL---------   93 (606)
T ss_dssp             SCCTTSCT--TCCEEECTTCCCSEE-CTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC---------
T ss_pred             cCcCCCCC--cCcEEEccCCccCcC-ChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcc---------
Confidence            45555543  789999999999975 578899999999999999999988899999999999999998874         


Q ss_pred             cccCCCCccCCCCCCCEEECcCCCCCCCCCccccCCCCCCeEeeeccCCCCCCCccccCCCCCCcEEEccCCCCCCCCCc
Q 046398          188 LSGQIPNRLGNLTSLRHLDLSANKFNSTTAGWLSKFNHLEFLSLSSNGLQGTISSIGLENLTSIKTIDLSLNFELGGPIP  267 (794)
Q Consensus       188 ~~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~~~~~~~~~~  267 (794)
                       .+..|..++++++|++|++++|.+++..+..+.++++|++|++++|.+++.... .+..+++|++|+++ ++.+.+..+
T Consensus        94 -~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~-~n~l~~~~~  170 (606)
T 3t6q_A           94 -IFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLP-KGFPTEKLKVLDFQ-NNAIHYLSK  170 (606)
T ss_dssp             -SEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCC-TTCCCTTCCEEECC-SSCCCEECH
T ss_pred             -cccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcc-cccCCcccCEEEcc-cCcccccCh
Confidence             455688899999999999999999998788899999999999999999863323 45559999999999 677888888


Q ss_pred             hhhhccCCCC--EEEccCCCCCcchHHHHHhhhhcCcCCccEEEeecccccccccccccCCCCCCEEEccCCcCcC----
Q 046398          268 TSFVRLCELT--SIDVSDVKLSQDLSQVLDILSACGASALESLVFSSSQISGHLTSQLGQFKSLRTLSLDDNCISG----  341 (794)
Q Consensus       268 ~~l~~l~~L~--~L~l~~~~l~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~----  341 (794)
                      ..+..+++|+  .|++++|.+.+..+..+..      ..|++|++++|..   .+..+..+.+++...+....+.+    
T Consensus       171 ~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~------~~L~~L~l~~~~~---~~~~~~~l~~~~l~~l~~~~~~~~~~~  241 (606)
T 3t6q_A          171 EDMSSLQQATNLSLNLNGNDIAGIEPGAFDS------AVFQSLNFGGTQN---LLVIFKGLKNSTIQSLWLGTFEDMDDE  241 (606)
T ss_dssp             HHHHTTTTCCSEEEECTTCCCCEECTTTTTT------CEEEEEECTTCSC---HHHHHHHTTTCEEEEEECCCCTTSCCC
T ss_pred             hhhhhhcccceeEEecCCCccCccChhHhhh------ccccccccCCchh---HHHHhhhccccchhheechhhcccccc
Confidence            8899999999  8999999998877665443      2789999988862   33444445554443333222221    


Q ss_pred             -CCCCCcCCCC--CCCEEEccCCcccccCCccccCCCCCCeEeccCcccccccChhhhcCCCCCCEEECcCCcceeEcCC
Q 046398          342 -PLPPALGDLS--SLTRLDLSRNMLNGSIPLSLGKISHLEYLDLSNNKMNGTLSEIHFVNLTKLTWFSASGNSLILQVNP  418 (794)
Q Consensus       342 -~~p~~l~~l~--~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~  418 (794)
                       ..+..+..+.  +|++|++++|.+++..+..+..+++|++|++++|+++ .+|. .+..+++|+.|++++|.+....+.
T Consensus       242 ~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~-~l~~l~~L~~L~l~~n~l~~~~~~  319 (606)
T 3t6q_A          242 DISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPS-GLVGLSTLKKLVLSANKFENLCQI  319 (606)
T ss_dssp             CCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCS-SCCSCTTCCEEECTTCCCSBGGGG
T ss_pred             ccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCCh-hhcccccCCEEECccCCcCcCchh
Confidence             1122233332  7999999999999888888999999999999999998 6776 588999999999999999988888


Q ss_pred             CCcCccccceEecccccCCCCCCc-ccCCCCCCCEEeccCCCCCCCcchhHHhccccceeccCcccCCCCCCCEEEccCC
Q 046398          419 NWVPPFQLKTLLLMSCHLGPQFPS-WLHSQKNLSVLDISNARISDTIPRWFWNSIFQLSGIIPESFKNFSNLEVLNLGDN  497 (794)
Q Consensus       419 ~~~~~~~L~~L~L~~n~l~~~~~~-~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~l~~~~p~~l~~l~~L~~L~Ls~n  497 (794)
                      .+..+++|++|++++|.+.+.++. .+..+++|++|++++|++++..             ..+..+..+++|++|++++|
T Consensus       320 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~-------------~~~~~~~~l~~L~~L~l~~n  386 (606)
T 3t6q_A          320 SASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSD-------------CCNLQLRNLSHLQSLNLSYN  386 (606)
T ss_dssp             CGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEE-------------ESTTTTTTCTTCCEEECCSC
T ss_pred             hhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCcccccc-------------CcchhcccCCCCCEEECCCC
Confidence            888999999999999998866654 5889999999999999987621             12667889999999999999


Q ss_pred             cccccCChhhhhcCCCCcEEEcccccccccCCcc-ccCCCCCCEEEccCCcCcccCCchhhccccccccccccCCCCccc
Q 046398          498 EFVGKIPTWMGEGFTSLLILILRSNKFDGFLPIQ-LCRLTSLQILDVANNSLSGTMPGCVNNFSAMATIDSSHQSNAMSY  576 (794)
Q Consensus       498 ~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~-~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~  576 (794)
                      ++++..|..+. .+++|+.|++++|++.+..|.. +..+++|++|++++|.+++..|..+..+++|              
T Consensus       387 ~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L--------------  451 (606)
T 3t6q_A          387 EPLSLKTEAFK-ECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPAL--------------  451 (606)
T ss_dssp             SCEEECTTTTT-TCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTC--------------
T ss_pred             cCCcCCHHHhc-CCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCC--------------
Confidence            99876666665 7999999999999999876654 8899999999999999998888777665555              


Q ss_pred             ccccccccccceeeEEEEeccchhhcccccceeEEEcCCCccccc---cChhhhcccCCCEEecccccccccCCcccccc
Q 046398          577 FEVTAYDCEVLEDASIVMKGSMVEYNSILNLVRIIDVSKNNFSGE---IPMELTYLRGLQSLNLSHNIFTGQIPENIGNL  653 (794)
Q Consensus       577 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~---ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l  653 (794)
                                                      +.|++++|++++.   .+..+..+++|++|+|++|++++..|..|+++
T Consensus       452 --------------------------------~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l  499 (606)
T 3t6q_A          452 --------------------------------QHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSL  499 (606)
T ss_dssp             --------------------------------CEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTC
T ss_pred             --------------------------------CEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccc
Confidence                                            8999999999873   33678999999999999999999999999999


Q ss_pred             CCCCEEeCCCCcCcccCcccccCCCCCCEEeCcCCcccccCCCC-CccCccCcccccCCCc
Q 046398          654 ISIESLDFSTNQLSSKISQSMSSLSFLNHLNVSNNLLTGKIPSS-TQLQSFDASCFVGNNL  713 (794)
Q Consensus       654 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~~-~~~~~~~~~~~~gn~l  713 (794)
                      ++|+.|+|++|++++.+|..+..++.| +|++++|++++.+|.. ..+..+....+.||.+
T Consensus       500 ~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~  559 (606)
T 3t6q_A          500 KMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPL  559 (606)
T ss_dssp             TTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCE
T ss_pred             cCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCc
Confidence            999999999999999999999999999 9999999999888764 4556666777888843

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=7.1e-53  Score=494.95  Aligned_cols=495  Identities=19%  Similarity=0.241  Sum_probs=304.2

Q ss_pred             CCCCHHHHHHHHHHHhcCCCCCCCCCCCCCC-----CCC--cce------------eeeEecCCCCcEEEEEcCCCCCcc
Q 046398           29 VGCTDSEREALLKLKQDLKDPSNRLGSWVVD-----GDC--CKW------------AEVVCSNLTGHVLQLSLRNPFRND   89 (794)
Q Consensus        29 ~~~~~~~~~~ll~~k~~~~~~~~~~~~W~~~-----~~~--c~w------------~gv~c~~~~~~v~~L~l~~~~~~~   89 (794)
                      +.+..+|++||++||+++.+|     +|+.+     .+|  |.|            .||+|+. .+||++|+|++     
T Consensus       264 ~~~~~~d~~ALl~~k~~l~~~-----~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~-~~~V~~L~Ls~-----  332 (876)
T 4ecn_A          264 TAEYIKDYKALKAIWEALDGK-----NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDN-NGRVTGLSLAG-----  332 (876)
T ss_dssp             CCHHHHHHHHHHHHHHHTTGG-----GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECT-TSCEEEEECTT-----
T ss_pred             cccchHHHHHHHHHHHHcCCC-----CCCcCCCcccccCCccccccccccccccCcCceEecC-CCCEEEEECcc-----
Confidence            345678999999999999876     68633     356  999            9999986 68999999998     


Q ss_pred             ccccchhhhhccccccceeecccccCCCCCCEEeC-CCCCCCCCCCCcccCCC-CCCCEEE---c------------CCC
Q 046398           90 LRYATTEYEDYMRSMLSGNVNPSLVDLKHLTHLDL-SGNDFQGIRIPKYLGSL-KNLRYLN---L------------SGA  152 (794)
Q Consensus        90 ~~~~~~~~~~~~~~~l~g~~~~~l~~l~~L~~L~L-s~n~l~~~~~p~~~~~l-~~L~~L~---L------------s~n  152 (794)
                                   +++.|.+|++++++++|++|+| ++|.+.+. .|-..... ..+....   +            ...
T Consensus       333 -------------~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~-~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~  398 (876)
T 4ecn_A          333 -------------FGAKGRVPDAIGQLTELKVLSFGTHSETVSG-RLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRL  398 (876)
T ss_dssp             -------------TCCEEEECGGGGGCTTCCEEESCCTTHHHHT-TCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGG
T ss_pred             -------------CCCCCcCchHHhccccceEeeeccccccccc-ccccccccccccchhHHHHHHHhhhhhhhccCcch
Confidence                         4899999999999999999999 88877654 22211111 0000000   0            000


Q ss_pred             CCCCCCcccccCCccccccccCccccccccccccccccCCCCccCCCCCCCEEECcC--CCCCCCCCccccCCCCCCeEe
Q 046398          153 EFAGIIPHQLGNLSNLRCLDLSWSEYALQVHSFSWLSGQIPNRLGNLTSLRHLDLSA--NKFNSTTAGWLSKFNHLEFLS  230 (794)
Q Consensus       153 ~l~~~~p~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~~~~lp~~l~~l~~L~~L~Ls~--n~l~~~~~~~l~~l~~L~~L~  230 (794)
                      .+.+..+..+...+.                       ..+........++.+.+..  |.+++ +|..++++++|++|+
T Consensus       399 ~~s~l~~~~l~~~~~-----------------------~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~  454 (876)
T 4ecn_A          399 NLSDLLQDAINRNPE-----------------------MKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIY  454 (876)
T ss_dssp             GSCHHHHHHHHTCTT-----------------------SCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEE
T ss_pred             hhhHHHHHHhhhCcc-----------------------ccccccccccchhhceeccccCcccc-hhHHHhcCCCCCEEE
Confidence            000000000000000                       0000011112222222222  44444 444455555555555


Q ss_pred             eeccCCCC-----------------CCCccccC--CCCCCcEEEccCCCCCCCCCchhhhccCCCCEEEccCCC-CCc-c
Q 046398          231 LSSNGLQG-----------------TISSIGLE--NLTSIKTIDLSLNFELGGPIPTSFVRLCELTSIDVSDVK-LSQ-D  289 (794)
Q Consensus       231 L~~n~l~~-----------------~i~~~~l~--~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~-l~~-~  289 (794)
                      +++|.+++                 .+|. .++  ++++|++|+++ +|.+.+.+|..+.++++|+.|++++|+ +++ .
T Consensus       455 Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~-~l~f~~L~~L~~L~Ls-~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~  532 (876)
T 4ecn_A          455 FANSPFTYDNIAVDWEDANSDYAKQYENE-ELSWSNLKDLTDVELY-NCPNMTQLPDFLYDLPELQSLNIACNRGISAAQ  532 (876)
T ss_dssp             EESCCCCGGGBSSSCSCTTSHHHHHHTTS-CCCGGGCTTCCEEEEE-SCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHH
T ss_pred             CcCCcCCCCcccccccccccccccccCCh-hhhhccCCCCCEEECc-CCCCCccChHHHhCCCCCCEEECcCCCCccccc
Confidence            55555554                 3666 555  78888888887 666777888888888888888888887 887 7


Q ss_pred             hHHHHHhhh--hcCcCCccEEEeecccccccccc--cccCCCCCCEEEccCCcCcCCCCCCcCCCCCCCEEEccCCcccc
Q 046398          290 LSQVLDILS--ACGASALESLVFSSSQISGHLTS--QLGQFKSLRTLSLDDNCISGPLPPALGDLSSLTRLDLSRNMLNG  365 (794)
Q Consensus       290 ~~~~l~~l~--~~~~~~L~~L~L~~n~l~~~~~~--~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~  365 (794)
                      +|..+..+.  ...+++|++|++++|.++ .+|.  .++.+++|++|++++|.++ .+| .++.+++|++|++++|.++ 
T Consensus       533 iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-  608 (876)
T 4ecn_A          533 LKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-  608 (876)
T ss_dssp             HHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-
T ss_pred             chHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-
Confidence            887776653  334568999999999999 7777  8999999999999999998 777 8999999999999999999 


Q ss_pred             cCCccccCCCC-CCeEeccCcccccccChhhhcCCC--CCCEEECcCCcceeEcCCCCcCccccceEecccccCCCCCCc
Q 046398          366 SIPLSLGKISH-LEYLDLSNNKMNGTLSEIHFVNLT--KLTWFSASGNSLILQVNPNWVPPFQLKTLLLMSCHLGPQFPS  442 (794)
Q Consensus       366 ~~p~~l~~l~~-L~~L~Ls~N~l~~~~~~~~~~~l~--~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~  442 (794)
                      .+|..+..+++ |++|++++|.+. .+|. .+..++  +|+.|++++|.                               
T Consensus       609 ~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~-~~~~~~~~~L~~L~Ls~N~-------------------------------  655 (876)
T 4ecn_A          609 EIPEDFCAFTDQVEGLGFSHNKLK-YIPN-IFNAKSVYVMGSVDFSYNK-------------------------------  655 (876)
T ss_dssp             CCCTTSCEECTTCCEEECCSSCCC-SCCS-CCCTTCSSCEEEEECCSSC-------------------------------
T ss_pred             cchHHHhhccccCCEEECcCCCCC-cCch-hhhccccCCCCEEECcCCc-------------------------------
Confidence            88888999999 999999999987 5553 222222  13333333333                               


Q ss_pred             ccCCCCCCCEEeccCCCCCCCcchhHHhccccceeccCcccC--CCCCCCEEEccCCcccccCChhhhhcCCCCcEEEcc
Q 046398          443 WLHSQKNLSVLDISNARISDTIPRWFWNSIFQLSGIIPESFK--NFSNLEVLNLGDNEFVGKIPTWMGEGFTSLLILILR  520 (794)
Q Consensus       443 ~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~l~~~~p~~l~--~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~  520 (794)
                                       +.+.+|.            ++..+.  .+++|+.|++++|+++ .+|..++..+++|+.|+|+
T Consensus       656 -----------------l~g~ip~------------l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls  705 (876)
T 4ecn_A          656 -----------------IGSEGRN------------ISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILS  705 (876)
T ss_dssp             -----------------TTTTSSS------------CSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECC
T ss_pred             -----------------CCCcccc------------chhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECC
Confidence                             3322111            111111  1234445555555544 4444444344455555555


Q ss_pred             cccccccCCccccC--------CCCCCEEEccCCcCcccCCchhh--ccccccccccccCCCCcccccccccccccceee
Q 046398          521 SNKFDGFLPIQLCR--------LTSLQILDVANNSLSGTMPGCVN--NFSAMATIDSSHQSNAMSYFEVTAYDCEVLEDA  590 (794)
Q Consensus       521 ~n~l~~~~p~~~~~--------l~~L~~L~Ls~N~l~~~~p~~~~--~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~  590 (794)
                      +|+++ .+|..+..        +++|+.|+|++|+++ .+|..+.  .+++                             
T Consensus       706 ~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~-----------------------------  754 (876)
T 4ecn_A          706 NNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPY-----------------------------  754 (876)
T ss_dssp             SCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTT-----------------------------
T ss_pred             CCcCC-ccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCC-----------------------------
Confidence            55544 23322221        125555555555555 3443332  2222                             


Q ss_pred             EEEEeccchhhcccccceeEEEcCCCccccccChhhhcccCCCEEeccc------ccccccCCccccccCCCCEEeCCCC
Q 046398          591 SIVMKGSMVEYNSILNLVRIIDVSKNNFSGEIPMELTYLRGLQSLNLSH------NIFTGQIPENIGNLISIESLDFSTN  664 (794)
Q Consensus       591 ~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~------N~l~~~ip~~l~~l~~L~~L~Ls~N  664 (794)
                                       |+.|+|++|++++ +|..+..+++|+.|+|++      |++.+.+|..++++++|+.|+|++|
T Consensus       755 -----------------L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N  816 (876)
T 4ecn_A          755 -----------------LSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSN  816 (876)
T ss_dssp             -----------------CCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSS
T ss_pred             -----------------cCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCC
Confidence                             2555555555554 455555555555555544      6666666666666677777777777


Q ss_pred             cCcccCcccccCCCCCCEEeCcCCccccc
Q 046398          665 QLSSKISQSMSSLSFLNHLNVSNNLLTGK  693 (794)
Q Consensus       665 ~l~~~~p~~l~~l~~L~~L~ls~N~l~g~  693 (794)
                      ++ +.+|..+.  ++|+.|||++|++...
T Consensus       817 ~L-~~Ip~~l~--~~L~~LdLs~N~l~~i  842 (876)
T 4ecn_A          817 DI-RKVDEKLT--PQLYILDIADNPNISI  842 (876)
T ss_dssp             CC-CBCCSCCC--SSSCEEECCSCTTCEE
T ss_pred             CC-CccCHhhc--CCCCEEECCCCCCCcc
Confidence            66 55666544  4667777777766543

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=1.1e-51  Score=478.66  Aligned_cols=521  Identities=20%  Similarity=0.168  Sum_probs=422.1

Q ss_pred             cccceeecccccCCCCCCEEeCCCCCCCCCCCCcccCCCCCCCEEEcCCCCCCCCCcccccCCccccccccCcccccccc
Q 046398          103 SMLSGNVNPSLVDLKHLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRCLDLSWSEYALQV  182 (794)
Q Consensus       103 ~~l~g~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~~~~~~~~  182 (794)
                      .+++ .+|..+.  +++++|+|++|.+++. .+..|+++++|++|++++|.+++..|..|+++++|++|++++|.+    
T Consensus        21 ~~l~-~ip~~~~--~~l~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l----   92 (606)
T 3vq2_A           21 QKLS-KVPDDIP--SSTKNIDLSFNPLKIL-KSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPI----   92 (606)
T ss_dssp             SCCS-SCCTTSC--TTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC----
T ss_pred             CCcc-cCCCCCC--CCcCEEECCCCCcCEe-ChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcc----
Confidence            3443 3455444  7899999999999865 566889999999999999999988888899999999999998874    


Q ss_pred             ccccccccCCCCccCCCCCCCEEECcCCCCCCCCCccccCCCCCCeEeeeccCCCC-CCCccccCCCCCCcEEEccCCCC
Q 046398          183 HSFSWLSGQIPNRLGNLTSLRHLDLSANKFNSTTAGWLSKFNHLEFLSLSSNGLQG-TISSIGLENLTSIKTIDLSLNFE  261 (794)
Q Consensus       183 ~~~~~~~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~-~i~~~~l~~l~~L~~L~L~~~~~  261 (794)
                            .+..|..|+++++|++|++++|.+++..+..++++++|++|++++|.+.+ .+|. .++++++|++|+++ ++.
T Consensus        93 ------~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~-~~~~l~~L~~L~Ls-~n~  164 (606)
T 3vq2_A           93 ------QSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPA-YFSNLTNLVHVDLS-YNY  164 (606)
T ss_dssp             ------CCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCG-GGGTCTTCCEEECC-SSC
T ss_pred             ------cccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechH-hHhhcCCCCEEEcc-CCc
Confidence                  34558889999999999999999998888889999999999999999875 5676 88999999999999 667


Q ss_pred             CCCCCchhhhccCCCC----EEEccCCCCCcchHHHHHhhhhcCcCCccEEEeeccccc-ccccccccCCCCCCEEEccC
Q 046398          262 LGGPIPTSFVRLCELT----SIDVSDVKLSQDLSQVLDILSACGASALESLVFSSSQIS-GHLTSQLGQFKSLRTLSLDD  336 (794)
Q Consensus       262 ~~~~~~~~l~~l~~L~----~L~l~~~~l~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~-~~~~~~l~~l~~L~~L~L~~  336 (794)
                      +.+..+..+..+.+|+    .+++++|.+++..+..+..      .+|++|++++|.++ +..|..+..+++|+.+++..
T Consensus       165 l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~------~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~  238 (606)
T 3vq2_A          165 IQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQG------IKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLIL  238 (606)
T ss_dssp             CCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTT------CEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEE
T ss_pred             ceecChhhhhhhhccccccceeeccCCCcceeCcccccC------ceeeeeeccCCccchhHHHHHhccccccccccccc
Confidence            7777777777666554    8999999988665544332      27899999999887 46677888899999888865


Q ss_pred             CcCcCC------CCCCcCCCC--CCCEEEc-cCCcccccCCccccCCCCCCeEeccCcccccccChhhhcCCCCCCEEEC
Q 046398          337 NCISGP------LPPALGDLS--SLTRLDL-SRNMLNGSIPLSLGKISHLEYLDLSNNKMNGTLSEIHFVNLTKLTWFSA  407 (794)
Q Consensus       337 n~l~~~------~p~~l~~l~--~L~~L~L-s~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~l  407 (794)
                      +.+.+.      .+..+.++.  .++.+++ ..|.+.+.+|. +..+++|+.|++++|.+. .++  .+..+++|+.|++
T Consensus       239 ~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~-~l~--~l~~~~~L~~L~l  314 (606)
T 3vq2_A          239 GEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIK-YLE--DVPKHFKWQSLSI  314 (606)
T ss_dssp             ECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCC-CCC--CCCTTCCCSEEEE
T ss_pred             cccccCCcccccChHHhhhhhhccHhheeccccccccccccc-cccCCCCCEEEecCccch-hhh--hccccccCCEEEc
Confidence            544321      111122222  4566777 67788877776 888999999999999986 566  6788899999999


Q ss_pred             cCCcceeEcCCCCcCccccceEecccccCCCCCCcccCCCCCCCEEeccCCCCCCCcchhHHhccccceeccCcccCCCC
Q 046398          408 SGNSLILQVNPNWVPPFQLKTLLLMSCHLGPQFPSWLHSQKNLSVLDISNARISDTIPRWFWNSIFQLSGIIPESFKNFS  487 (794)
Q Consensus       408 s~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~l~~~~p~~l~~l~  487 (794)
                      ++|.+ +.++ .+ .+++|++|++++|...+..  .+..+++|++|++++|++++.             +.+|..+..++
T Consensus       315 ~~n~l-~~lp-~~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~-------------~~~~~~~~~~~  376 (606)
T 3vq2_A          315 IRCQL-KQFP-TL-DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFS-------------GCCSYSDLGTN  376 (606)
T ss_dssp             ESCCC-SSCC-CC-CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEE-------------EECCHHHHCCS
T ss_pred             ccccC-cccc-cC-CCCccceeeccCCcCccch--hhccCCCCCEEECcCCccCCC-------------cchhhhhccCC
Confidence            99998 5555 55 8889999999999655544  567889999999999987652             12366778889


Q ss_pred             CCCEEEccCCcccccCChhhhhcCCCCcEEEcccccccccCC-ccccCCCCCCEEEccCCcCcccCCchhhccccccccc
Q 046398          488 NLEVLNLGDNEFVGKIPTWMGEGFTSLLILILRSNKFDGFLP-IQLCRLTSLQILDVANNSLSGTMPGCVNNFSAMATID  566 (794)
Q Consensus       488 ~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~  566 (794)
                      +|++|++++|+++ .+|..+. .+++|+.|++++|++.+..| ..+..+++|++|++++|++++..|..+.++++|    
T Consensus       377 ~L~~L~L~~n~l~-~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L----  450 (606)
T 3vq2_A          377 SLRHLDLSFNGAI-IMSANFM-GLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSL----  450 (606)
T ss_dssp             CCCEEECCSCSEE-EECCCCT-TCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTC----
T ss_pred             cccEeECCCCccc-cchhhcc-CCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCC----
Confidence            9999999999988 5775555 68999999999999998877 688899999999999999998888777665555    


Q ss_pred             cccCCCCcccccccccccccceeeEEEEeccchhhcccccceeEEEcCCCcccc-ccChhhhcccCCCEEeccccccccc
Q 046398          567 SSHQSNAMSYFEVTAYDCEVLEDASIVMKGSMVEYNSILNLVRIIDVSKNNFSG-EIPMELTYLRGLQSLNLSHNIFTGQ  645 (794)
Q Consensus       567 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~-~ip~~l~~l~~L~~L~Ls~N~l~~~  645 (794)
                                                                +.|++++|++++ .+|..++.+++|++|+|++|++++.
T Consensus       451 ------------------------------------------~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~  488 (606)
T 3vq2_A          451 ------------------------------------------NTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQI  488 (606)
T ss_dssp             ------------------------------------------CEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEE
T ss_pred             ------------------------------------------CEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCcc
Confidence                                                      899999999998 4788999999999999999999999


Q ss_pred             CCccccccCCCCEEeCCCCcCcccCcccccCCCCCCEEeCcCCcccccCCCC-CccC-ccCcccccCC-CcCCC
Q 046398          646 IPENIGNLISIESLDFSTNQLSSKISQSMSSLSFLNHLNVSNNLLTGKIPSS-TQLQ-SFDASCFVGN-NLCGP  716 (794)
Q Consensus       646 ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~~-~~~~-~~~~~~~~gn-~lcg~  716 (794)
                      .|..++++++|+.|+|++|++++.+|..+..+++|++|++++|+++ .+|.. ..+. .+....+.+| -.|..
T Consensus       489 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c  561 (606)
T 3vq2_A          489 SWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACIC  561 (606)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSS
T ss_pred             ChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCC
Confidence            9999999999999999999999999999999999999999999999 56654 3332 3566678888 44543

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=3.1e-50  Score=481.90  Aligned_cols=527  Identities=22%  Similarity=0.203  Sum_probs=414.2

Q ss_pred             hccccccceeecccccCCCCCCEEeCCCCCCCCCCCCcccCCCCCCCEEEcCCCCCCCCC-cccccCCccccccccCccc
Q 046398           99 DYMRSMLSGNVNPSLVDLKHLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGII-PHQLGNLSNLRCLDLSWSE  177 (794)
Q Consensus        99 ~~~~~~l~g~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~-p~~l~~l~~L~~L~Ls~~~  177 (794)
                      +.+..+++. +|.   -.++|++|||++|.+++. .|..|..+++|++|+|++|...+.+ |..|+++++|++|+|++|.
T Consensus        10 dcs~~~L~~-vP~---lp~~l~~LdLs~N~i~~i-~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~   84 (844)
T 3j0a_A           10 FYRFCNLTQ-VPQ---VLNTTERLLLSFNYIRTV-TASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSK   84 (844)
T ss_dssp             EESCCCSSC-CCS---SCTTCCEEEEESCCCCEE-CSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCC
T ss_pred             EccCCCCCC-CCC---CCCCcCEEECCCCcCCcc-ChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCc
Confidence            334445554 343   457899999999999875 6788899999999999999665555 7789999999999998887


Q ss_pred             cccccccccccccCCCCccCCCCCCCEEECcCCCCCCCCCcc--ccCCCCCCeEeeeccCCCCCCCccccCCCCCCcEEE
Q 046398          178 YALQVHSFSWLSGQIPNRLGNLTSLRHLDLSANKFNSTTAGW--LSKFNHLEFLSLSSNGLQGTISSIGLENLTSIKTID  255 (794)
Q Consensus       178 ~~~~~~~~~~~~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~~~--l~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~  255 (794)
                      +          .+..|..|.++++|++|+|++|.+++..+..  +.++++|++|++++|.+++..+...++++++|++|+
T Consensus        85 l----------~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~  154 (844)
T 3j0a_A           85 I----------YFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSID  154 (844)
T ss_dssp             C----------CEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEE
T ss_pred             C----------cccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEE
Confidence            4          3456888999999999999999998866554  888999999999999988766544788999999999


Q ss_pred             ccCCCCCCCCCchhhhcc--CCCCEEEccCCCCCcchHHHHHhhhh-cCcCCccEEEeecccccccccccccCC---CCC
Q 046398          256 LSLNFELGGPIPTSFVRL--CELTSIDVSDVKLSQDLSQVLDILSA-CGASALESLVFSSSQISGHLTSQLGQF---KSL  329 (794)
Q Consensus       256 L~~~~~~~~~~~~~l~~l--~~L~~L~l~~~~l~~~~~~~l~~l~~-~~~~~L~~L~L~~n~l~~~~~~~l~~l---~~L  329 (794)
                      ++ ++.+.+..+..+..+  ++|+.|+++.|.+.+..+..+..+.. .....|++|++++|.+++..+..+...   +++
T Consensus       155 Ls-~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l  233 (844)
T 3j0a_A          155 FS-SNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQA  233 (844)
T ss_dssp             EE-SSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCB
T ss_pred             CC-CCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccc
Confidence            98 677888888888777  88999999998888766544332220 011248889999988887777665543   567


Q ss_pred             CEEEccCCc---------CcCCCCCCcCCC--CCCCEEEccCCcccccCCccccCCCCCCeEeccCcccccccChhhhcC
Q 046398          330 RTLSLDDNC---------ISGPLPPALGDL--SSLTRLDLSRNMLNGSIPLSLGKISHLEYLDLSNNKMNGTLSEIHFVN  398 (794)
Q Consensus       330 ~~L~L~~n~---------l~~~~p~~l~~l--~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~  398 (794)
                      +.+.++.+.         +.+..+..+.++  ++|++|++++|.+.+..|..+..+++|+.|++++|++.+..+. .|..
T Consensus       234 ~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~-~~~~  312 (844)
T 3j0a_A          234 FSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADE-AFYG  312 (844)
T ss_dssp             SEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTT-TTTT
T ss_pred             cceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChH-HhcC
Confidence            788876432         222223344443  6899999999999888888888899999999999999855444 7888


Q ss_pred             CCCCCEEECcCCcceeEcCCCCcCccccceEecccccCCCCCCcccCCCCCCCEEeccCCCCCCCcchhHHhccccceec
Q 046398          399 LTKLTWFSASGNSLILQVNPNWVPPFQLKTLLLMSCHLGPQFPSWLHSQKNLSVLDISNARISDTIPRWFWNSIFQLSGI  478 (794)
Q Consensus       399 l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~l~~~  478 (794)
                      +++|+.|++++|.+....+..+..+++|+.|++++|.+....+..+..+++|+.|++++|.+++                
T Consensus       313 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~----------------  376 (844)
T 3j0a_A          313 LDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTT----------------  376 (844)
T ss_dssp             CSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCC----------------
T ss_pred             CCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCc----------------
Confidence            9999999999999888878888888899999999998888878888889999999999998775                


Q ss_pred             cCcccCCCCCCCEEEccCCcccccCChhhhhcCCCCcEEEcccccccccC-CccccCCCCCCEEEccCCcCcccCCch-h
Q 046398          479 IPESFKNFSNLEVLNLGDNEFVGKIPTWMGEGFTSLLILILRSNKFDGFL-PIQLCRLTSLQILDVANNSLSGTMPGC-V  556 (794)
Q Consensus       479 ~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~-p~~~~~l~~L~~L~Ls~N~l~~~~p~~-~  556 (794)
                      +    ..+++|+.|++++|+++ .+|..    ..+++.|++++|++++.. +..+..+++|++|++++|++++..+.. +
T Consensus       377 i----~~~~~L~~L~l~~N~l~-~l~~~----~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~  447 (844)
T 3j0a_A          377 I----HFIPSIPDIFLSGNKLV-TLPKI----NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTP  447 (844)
T ss_dssp             C----SSCCSCSEEEEESCCCC-CCCCC----CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSS
T ss_pred             c----cCCCCcchhccCCCCcc-ccccc----ccccceeecccCccccCchhhhhhcCCccceeeCCCCccccccccccc
Confidence            2    23678899999999987 67653    567889999999988643 234568889999999999887543321 1


Q ss_pred             hccccccccccccCCCCcccccccccccccceeeEEEEeccchhhcccccceeEEEcCCCccc-----cccChhhhcccC
Q 046398          557 NNFSAMATIDSSHQSNAMSYFEVTAYDCEVLEDASIVMKGSMVEYNSILNLVRIIDVSKNNFS-----GEIPMELTYLRG  631 (794)
Q Consensus       557 ~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~-----~~ip~~l~~l~~  631 (794)
                      .                                              .+++|+.|++++|.++     +..+..+..+++
T Consensus       448 ~----------------------------------------------~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~  481 (844)
T 3j0a_A          448 S----------------------------------------------ENPSLEQLFLGENMLQLAWETELCWDVFEGLSH  481 (844)
T ss_dssp             C----------------------------------------------SCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCC
T ss_pred             c----------------------------------------------cCCccccccCCCCccccccccccchhhhcCccc
Confidence            1                                              1345688999999997     455567889999


Q ss_pred             CCEEecccccccccCCccccccCCCCEEeCCCCcCcccCcccccCCCCCCEEeCcCCcccccCCCCCccCccCcccccCC
Q 046398          632 LQSLNLSHNIFTGQIPENIGNLISIESLDFSTNQLSSKISQSMSSLSFLNHLNVSNNLLTGKIPSSTQLQSFDASCFVGN  711 (794)
Q Consensus       632 L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gn  711 (794)
                      |+.|+|++|++++..|..|.++++|+.|+|++|++++..|..+.  ++|+.|++++|+++|.+|..  +..+....+.||
T Consensus       482 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~--~~~L~~l~l~~N  557 (844)
T 3j0a_A          482 LQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDV--FVSLSVLDITHN  557 (844)
T ss_dssp             EECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCC--CSSCCEEEEEEE
T ss_pred             ccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhH--hCCcCEEEecCC
Confidence            99999999999999999999999999999999999998887776  89999999999999999964  567777788899


Q ss_pred             -CcCCCC
Q 046398          712 -NLCGPP  717 (794)
Q Consensus       712 -~lcg~~  717 (794)
                       -.|..+
T Consensus       558 p~~C~c~  564 (844)
T 3j0a_A          558 KFICECE  564 (844)
T ss_dssp             CCCCSSS
T ss_pred             Ccccccc
Confidence             566543

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=9.4e-48  Score=442.56  Aligned_cols=501  Identities=20%  Similarity=0.195  Sum_probs=395.0

Q ss_pred             ecccccCCCCCCEEeCCCCCCCCCCCCcccCCCCCCCEEEcCCCCCCCCCcccccCCccccccccCcccccccccccccc
Q 046398          109 VNPSLVDLKHLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRCLDLSWSEYALQVHSFSWL  188 (794)
Q Consensus       109 ~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~  188 (794)
                      +|..+.  +++++|+|++|.++++ .+..|..+++|++|+|++|++++..|..|+++++|++|++++|.+.         
T Consensus        22 ip~~l~--~~l~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~---------   89 (570)
T 2z63_A           22 IPDNLP--FSTKNLDLSFNPLRHL-GSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ---------   89 (570)
T ss_dssp             CCSSSC--SSCCEEECCSCCCCEE-CTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC---------
T ss_pred             cCCCcc--ccccEEEccCCccCcc-ChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCC---------
Confidence            444443  5789999999998865 4667888999999999999998877888899999999999888743         


Q ss_pred             ccCCCCccCCCCCCCEEECcCCCCCCCCCccccCCCCCCeEeeeccCCCC-CCCccccCCCCCCcEEEccCCCCCCCCCc
Q 046398          189 SGQIPNRLGNLTSLRHLDLSANKFNSTTAGWLSKFNHLEFLSLSSNGLQG-TISSIGLENLTSIKTIDLSLNFELGGPIP  267 (794)
Q Consensus       189 ~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~-~i~~~~l~~l~~L~~L~L~~~~~~~~~~~  267 (794)
                       +..|..|.++++|++|++++|.+++..+..++++++|++|++++|.+++ .+|. .++++++|++|+++ ++.+.+..+
T Consensus        90 -~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~-~~~~l~~L~~L~l~-~n~l~~~~~  166 (570)
T 2z63_A           90 -SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPE-YFSNLTNLEHLDLS-SNKIQSIYC  166 (570)
T ss_dssp             -EECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCG-GGGGCTTCCEEECT-TSCCCEECG
T ss_pred             -ccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChh-hhcccCCCCEEeCc-CCccceecH
Confidence             3445788889999999999999888877678899999999999998876 4566 78888999999998 667777777


Q ss_pred             hhhhccCCC----CEEEccCCCCCcchHHHHHhhhhcCcCCccEEEeecccccc-cccccccCCCCCCEEEccCCcCc--
Q 046398          268 TSFVRLCEL----TSIDVSDVKLSQDLSQVLDILSACGASALESLVFSSSQISG-HLTSQLGQFKSLRTLSLDDNCIS--  340 (794)
Q Consensus       268 ~~l~~l~~L----~~L~l~~~~l~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~--  340 (794)
                      ..+..+++|    +.+++++|.+.+..+..+...      +|++|++++|.... ..+..+..+++++.+.+....+.  
T Consensus       167 ~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~------~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~  240 (570)
T 2z63_A          167 TDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI------RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNE  240 (570)
T ss_dssp             GGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTC------EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCC
T ss_pred             HHccchhccchhhhhcccCCCCceecCHHHhccC------cceeEecccccccccchhhhhcCccccceeeeccccccCc
Confidence            788888887    788888888887666554322      68888888874332 23445566666666555432221  


Q ss_pred             ----CCCCCCcCCCC--CCCEEEccCC-cccccCCccccCCCCCCeEeccCcccccccChhhhcCCCCCCEEECcCCcce
Q 046398          341 ----GPLPPALGDLS--SLTRLDLSRN-MLNGSIPLSLGKISHLEYLDLSNNKMNGTLSEIHFVNLTKLTWFSASGNSLI  413 (794)
Q Consensus       341 ----~~~p~~l~~l~--~L~~L~Ls~n-~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~ls~n~l~  413 (794)
                          ......+..++  .++.++++++ .+.+..|..+..+++|++|++++|.+. .+|. .+..+ +|+.|++++|.+.
T Consensus       241 ~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~-~~~~~-~L~~L~l~~n~~~  317 (570)
T 2z63_A          241 GNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKD-FSYNF-GWQHLELVNCKFG  317 (570)
T ss_dssp             SSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCB-CCSCC-CCSEEEEESCBCS
T ss_pred             hhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccch-hhhh-hhccC-CccEEeeccCccc
Confidence                11112222222  3566677776 667777888888888888888888887 5665 45566 8888888888876


Q ss_pred             eEcCCCCcCccccceEecccccCCCCCCcccCCCCCCCEEeccCCCCCCCcchhHHhccccceeccCcccCCCCCCCEEE
Q 046398          414 LQVNPNWVPPFQLKTLLLMSCHLGPQFPSWLHSQKNLSVLDISNARISDTIPRWFWNSIFQLSGIIPESFKNFSNLEVLN  493 (794)
Q Consensus       414 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~l~~~~p~~l~~l~~L~~L~  493 (794)
                       .++.  ..+++|+.|++++|.+.+..+.  ..+++|++|++++|++++..             ..|..+..+++|++|+
T Consensus       318 -~l~~--~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~-------------~~~~~~~~~~~L~~L~  379 (570)
T 2z63_A          318 -QFPT--LKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKG-------------CCSQSDFGTTSLKYLD  379 (570)
T ss_dssp             -SCCB--CBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEE-------------EEEHHHHTCSCCCEEE
T ss_pred             -ccCc--ccccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCccc-------------cccccccccCccCEEE
Confidence             2332  3567888899988888776665  67899999999999887521             2355677889999999


Q ss_pred             ccCCcccccCChhhhhcCCCCcEEEcccccccccCC-ccccCCCCCCEEEccCCcCcccCCchhhccccccccccccCCC
Q 046398          494 LGDNEFVGKIPTWMGEGFTSLLILILRSNKFDGFLP-IQLCRLTSLQILDVANNSLSGTMPGCVNNFSAMATIDSSHQSN  572 (794)
Q Consensus       494 Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~  572 (794)
                      +++|++++ +|..+. .+++|+.|++++|++.+..| ..+..+++|++|++++|++.+..|..+.++++|          
T Consensus       380 l~~n~l~~-~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L----------  447 (570)
T 2z63_A          380 LSFNGVIT-MSSNFL-GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSL----------  447 (570)
T ss_dssp             CCSCSEEE-EEEEEE-TCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTC----------
T ss_pred             CCCCcccc-cccccc-ccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcC----------
Confidence            99999984 555444 78999999999999998766 578899999999999999998888777665555          


Q ss_pred             CcccccccccccccceeeEEEEeccchhhcccccceeEEEcCCCccc-cccChhhhcccCCCEEecccccccccCCcccc
Q 046398          573 AMSYFEVTAYDCEVLEDASIVMKGSMVEYNSILNLVRIIDVSKNNFS-GEIPMELTYLRGLQSLNLSHNIFTGQIPENIG  651 (794)
Q Consensus       573 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~-~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~  651 (794)
                                                          +.|++++|+++ +.+|..+..+++|++|+|++|++++..|..++
T Consensus       448 ------------------------------------~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~  491 (570)
T 2z63_A          448 ------------------------------------EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFN  491 (570)
T ss_dssp             ------------------------------------CEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTT
T ss_pred             ------------------------------------cEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhh
Confidence                                                88999999998 68999999999999999999999988899999


Q ss_pred             ccCCCCEEeCCCCcCcccCcccccCCCCCCEEeCcCCcccccCCCCCc
Q 046398          652 NLISIESLDFSTNQLSSKISQSMSSLSFLNHLNVSNNLLTGKIPSSTQ  699 (794)
Q Consensus       652 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~~~~  699 (794)
                      ++++|+.|++++|++++.+|..+..+++|++|++++|+++|.+|....
T Consensus       492 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~~~  539 (570)
T 2z63_A          492 SLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDY  539 (570)
T ss_dssp             TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTHH
T ss_pred             cccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcchHH
Confidence            999999999999999999999999999999999999999999997543

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=2e-48  Score=445.89  Aligned_cols=481  Identities=19%  Similarity=0.243  Sum_probs=361.6

Q ss_pred             eecccccCCCCCCEEeCCCCCCCCCCCCcccCCCCCCCEEEcCCCCCCCCCcccccCCccccccccCccccccccccccc
Q 046398          108 NVNPSLVDLKHLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRCLDLSWSEYALQVHSFSW  187 (794)
Q Consensus       108 ~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~~~~~~~~~~~~~  187 (794)
                      .+|+.+.  ++|++|+|++|++++. .|..|+.+++|++|++++|++++..|+.|+++++|++|++++|.+.        
T Consensus        19 ~ip~~~~--~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~--------   87 (549)
T 2z81_A           19 SIPSGLT--AAMKSLDLSFNKITYI-GHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLS--------   87 (549)
T ss_dssp             SCCSCCC--TTCCEEECCSSCCCEE-CSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCC--------
T ss_pred             cccccCC--CCccEEECcCCccCcc-ChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccC--------
Confidence            3454443  7899999999999875 5788999999999999999999888889999999999999988743        


Q ss_pred             cccCCCCccCCCCCCCEEECcCCCCCCC-CCccccCCCCCCeEeeeccCCCCCCCccccCCCCCCcEEEccCCCCCCCCC
Q 046398          188 LSGQIPNRLGNLTSLRHLDLSANKFNST-TAGWLSKFNHLEFLSLSSNGLQGTISSIGLENLTSIKTIDLSLNFELGGPI  266 (794)
Q Consensus       188 ~~~~lp~~l~~l~~L~~L~Ls~n~l~~~-~~~~l~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~~~~~~~~~  266 (794)
                        +..|..++++++|++|++++|.+++. .+..+.++++|++|++++|.+.+.++...+.++++|++|+++ ++.+.+..
T Consensus        88 --~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~-~n~l~~~~  164 (549)
T 2z81_A           88 --SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIK-ALSLRNYQ  164 (549)
T ss_dssp             --SCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEE-ETTCCEEC
T ss_pred             --ccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeecc-CCcccccC
Confidence              44455689999999999999999874 567789999999999999986667776688999999999999 67788888


Q ss_pred             chhhhccCCCCEEEccCCCCCcchHHHHHhhhhcCcCCccEEEeecccccccc---cccccCCCCCCEEEccCCcCcCCC
Q 046398          267 PTSFVRLCELTSIDVSDVKLSQDLSQVLDILSACGASALESLVFSSSQISGHL---TSQLGQFKSLRTLSLDDNCISGPL  343 (794)
Q Consensus       267 ~~~l~~l~~L~~L~l~~~~l~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~---~~~l~~l~~L~~L~L~~n~l~~~~  343 (794)
                      |..+..+++|+.|+++.|.+.......+..++     +|++|++++|++++..   ......+++|+.|++++|.+++..
T Consensus       165 ~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~-----~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~  239 (549)
T 2z81_A          165 SQSLKSIRDIHHLTLHLSESAFLLEIFADILS-----SVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDES  239 (549)
T ss_dssp             TTTTTTCSEEEEEEEECSBSTTHHHHHHHSTT-----TBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHH
T ss_pred             hhhhhccccCceEecccCcccccchhhHhhcc-----cccEEEccCCccccccccccchhhhhhcccceeccccccchhH
Confidence            88999999999999988887543332223333     7888888888777642   112234566777777777665432


Q ss_pred             C----CCcCCCCCCCEEEccCCcccccC------CccccCCCCCCeEeccCcccccccChhhhcCCCCCCEEECcCCcce
Q 046398          344 P----PALGDLSSLTRLDLSRNMLNGSI------PLSLGKISHLEYLDLSNNKMNGTLSEIHFVNLTKLTWFSASGNSLI  413 (794)
Q Consensus       344 p----~~l~~l~~L~~L~Ls~n~l~~~~------p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~ls~n~l~  413 (794)
                      +    ..+..+++|+.+++++|.+.+..      ...+..+++|+.|++.++.+....   .+..+              
T Consensus       240 ~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~---~~~~l--------------  302 (549)
T 2z81_A          240 FNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFY---LFYDL--------------  302 (549)
T ss_dssp             HHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGG---GSCCC--------------
T ss_pred             HHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhh---hcccc--------------
Confidence            2    22345566777777776665421      112344555666666555543110   00000              


Q ss_pred             eEcCCCCcCccccceEecccccCCCCCCccc-CCCCCCCEEeccCCCCCCCcchhHHhccccceeccCcccCCCCCCCEE
Q 046398          414 LQVNPNWVPPFQLKTLLLMSCHLGPQFPSWL-HSQKNLSVLDISNARISDTIPRWFWNSIFQLSGIIPESFKNFSNLEVL  492 (794)
Q Consensus       414 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l-~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~l~~~~p~~l~~l~~L~~L  492 (794)
                         +..+....+|+.|++++|.+. .+|..+ ..+++|++|++++|++++.+|..            +..+..+++|++|
T Consensus       303 ---~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~------------~~~~~~l~~L~~L  366 (549)
T 2z81_A          303 ---STVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKN------------SACKGAWPSLQTL  366 (549)
T ss_dssp             ---CHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHH------------HTCTTSSTTCCEE
T ss_pred             ---hhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccc------------hhhhhccccCcEE
Confidence               000112346777777777765 455554 57899999999999988744321            2346788999999


Q ss_pred             EccCCcccccCCh--hhhhcCCCCcEEEcccccccccCCccccCCCCCCEEEccCCcCcccCCchhhccccccccccccC
Q 046398          493 NLGDNEFVGKIPT--WMGEGFTSLLILILRSNKFDGFLPIQLCRLTSLQILDVANNSLSGTMPGCVNNFSAMATIDSSHQ  570 (794)
Q Consensus       493 ~Ls~n~l~~~ip~--~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~  570 (794)
                      ++++|++++ ++.  .....+++|++|++++|+++ .+|..+..+++|++|++++|++++ +|..+              
T Consensus       367 ~Ls~N~l~~-~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~~-l~~~~--------------  429 (549)
T 2z81_A          367 VLSQNHLRS-MQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRV-VKTCI--------------  429 (549)
T ss_dssp             ECTTSCCCC-HHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCSC-CCTTS--------------
T ss_pred             EccCCcccc-cccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCccc-ccchh--------------
Confidence            999999974 442  23347999999999999998 678889999999999999999873 33221              


Q ss_pred             CCCcccccccccccccceeeEEEEeccchhhcccccceeEEEcCCCccccccChhhhcccCCCEEecccccccccCCccc
Q 046398          571 SNAMSYFEVTAYDCEVLEDASIVMKGSMVEYNSILNLVRIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQIPENI  650 (794)
Q Consensus       571 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l  650 (794)
                                                        .+.|+.||+++|++++.+    ..+++|++|+|++|+++ .+|+ .
T Consensus       430 ----------------------------------~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~-~  469 (549)
T 2z81_A          430 ----------------------------------PQTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLK-TLPD-A  469 (549)
T ss_dssp             ----------------------------------CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-SCCC-G
T ss_pred             ----------------------------------cCCceEEECCCCChhhhc----ccCChhcEEECCCCccC-cCCC-c
Confidence                                              134589999999999753    57899999999999999 7887 5


Q ss_pred             cccCCCCEEeCCCCcCcccCcccccCCCCCCEEeCcCCcccccCCCC
Q 046398          651 GNLISIESLDFSTNQLSSKISQSMSSLSFLNHLNVSNNLLTGKIPSS  697 (794)
Q Consensus       651 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~~  697 (794)
                      +.+++|+.|+|++|++++.+|..+..+++|+.|++++|+++|.+|..
T Consensus       470 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~  516 (549)
T 2z81_A          470 SLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI  516 (549)
T ss_dssp             GGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHHHH
T ss_pred             ccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCccH
Confidence            78999999999999999999999999999999999999999998853

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=2.9e-47  Score=438.41  Aligned_cols=490  Identities=20%  Similarity=0.202  Sum_probs=403.1

Q ss_pred             cchhhhhccccccceeecccccCCCCCCEEeCCCCCCCCCCCCcccCCCCCCCEEEcCCCCCCCCCcccccCCccccccc
Q 046398           93 ATTEYEDYMRSMLSGNVNPSLVDLKHLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRCLD  172 (794)
Q Consensus        93 ~~~~~~~~~~~~l~g~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~  172 (794)
                      ..+..+++..+.+++..+..|.++++|++|+|++|+++++ .|..|+.+++|++|+|++|.+++..|..|+++++|++|+
T Consensus        28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  106 (570)
T 2z63_A           28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTI-EDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV  106 (570)
T ss_dssp             SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEE-CTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEE
T ss_pred             ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCcc-CcccccCchhCCEEeCcCCcCCccCHhhhcCcccccccc
Confidence            3456678888999988888999999999999999999965 567899999999999999999988889999999999999


Q ss_pred             cCccccccccccccccccCCC-CccCCCCCCCEEECcCCCCCCC-CCccccCCCCCCeEeeeccCCCCCCCccccCCCCC
Q 046398          173 LSWSEYALQVHSFSWLSGQIP-NRLGNLTSLRHLDLSANKFNST-TAGWLSKFNHLEFLSLSSNGLQGTISSIGLENLTS  250 (794)
Q Consensus       173 Ls~~~~~~~~~~~~~~~~~lp-~~l~~l~~L~~L~Ls~n~l~~~-~~~~l~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~  250 (794)
                      +++|.+.           .+| ..++++++|++|++++|.+++. .|..++++++|++|++++|.+++..+. .++.+++
T Consensus       107 L~~n~l~-----------~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~  174 (570)
T 2z63_A          107 AVETNLA-----------SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT-DLRVLHQ  174 (570)
T ss_dssp             CTTSCCC-----------CSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGG-GGHHHHT
T ss_pred             ccccccc-----------cCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHH-Hccchhc
Confidence            9998854           344 3699999999999999999884 688999999999999999999855444 7777888


Q ss_pred             C----cEEEccCCCCCCCCCchhhhccCCCCEEEccCCCCCc-chHHHHHhhhhcCcCCccEEEeeccccc------ccc
Q 046398          251 I----KTIDLSLNFELGGPIPTSFVRLCELTSIDVSDVKLSQ-DLSQVLDILSACGASALESLVFSSSQIS------GHL  319 (794)
Q Consensus       251 L----~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~-~~~~~l~~l~~~~~~~L~~L~L~~n~l~------~~~  319 (794)
                      |    +.++++ ++.+.+..+..+... +|+.|++++|.... ..+..+..+.     .++...+....+.      ...
T Consensus       175 L~~~~~~L~l~-~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~-----~l~~~~l~~~~~~~~~~l~~~~  247 (570)
T 2z63_A          175 MPLLNLSLDLS-LNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLA-----GLEVHRLVLGEFRNEGNLEKFD  247 (570)
T ss_dssp             CTTCCCEEECT-TCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTT-----TCEEEEEEEEECCCCSSCEECC
T ss_pred             cchhhhhcccC-CCCceecCHHHhccC-cceeEecccccccccchhhhhcCcc-----ccceeeeccccccCchhhhhcc
Confidence            7    899999 677777777777665 89999999886543 3344455444     6665555433221      112


Q ss_pred             cccccCCC--CCCEEEccCC-cCcCCCCCCcCCCCCCCEEEccCCcccccCCccccCCCCCCeEeccCcccccccChhhh
Q 046398          320 TSQLGQFK--SLRTLSLDDN-CISGPLPPALGDLSSLTRLDLSRNMLNGSIPLSLGKISHLEYLDLSNNKMNGTLSEIHF  396 (794)
Q Consensus       320 ~~~l~~l~--~L~~L~L~~n-~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~  396 (794)
                      ...+..++  .++.++++++ .+.+..|..+..+++|++|++++|.+. .+|..+..+ +|++|++++|.+. .+|.   
T Consensus       248 ~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~-~l~~---  321 (570)
T 2z63_A          248 KSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFG-QFPT---  321 (570)
T ss_dssp             TTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCS-SCCB---
T ss_pred             hhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccC-CccEEeeccCccc-ccCc---
Confidence            22233332  3567777777 677778888888889999999999887 577778887 8999999999887 5554   


Q ss_pred             cCCCCCCEEECcCCcceeEcCCCCcCccccceEecccccCCCCC--CcccCCCCCCCEEeccCCCCCCCcchhHHhcccc
Q 046398          397 VNLTKLTWFSASGNSLILQVNPNWVPPFQLKTLLLMSCHLGPQF--PSWLHSQKNLSVLDISNARISDTIPRWFWNSIFQ  474 (794)
Q Consensus       397 ~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~--~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~  474 (794)
                      ..+++|+.|++++|.+.+..+.  ..+++|++|++++|.+.+..  +..+..+++|++|++++|++.+            
T Consensus       322 ~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~------------  387 (570)
T 2z63_A          322 LKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT------------  387 (570)
T ss_dssp             CBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEE------------
T ss_pred             ccccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccc------------
Confidence            4778899999999887765544  56778999999999887654  6778889999999999998775            


Q ss_pred             ceeccCcccCCCCCCCEEEccCCcccccCChhhhhcCCCCcEEEcccccccccCCccccCCCCCCEEEccCCcCc-ccCC
Q 046398          475 LSGIIPESFKNFSNLEVLNLGDNEFVGKIPTWMGEGFTSLLILILRSNKFDGFLPIQLCRLTSLQILDVANNSLS-GTMP  553 (794)
Q Consensus       475 l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~-~~~p  553 (794)
                          ++..+..+++|++|++++|++.+..|...+..+++|++|++++|++.+..|..+..+++|++|++++|+++ +.+|
T Consensus       388 ----~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p  463 (570)
T 2z63_A          388 ----MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP  463 (570)
T ss_dssp             ----EEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEEC
T ss_pred             ----ccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccch
Confidence                34448889999999999999997666444557999999999999999999999999999999999999997 5677


Q ss_pred             chhhccccccccccccCCCCcccccccccccccceeeEEEEeccchhhcccccceeEEEcCCCccccccChhhhcccCCC
Q 046398          554 GCVNNFSAMATIDSSHQSNAMSYFEVTAYDCEVLEDASIVMKGSMVEYNSILNLVRIIDVSKNNFSGEIPMELTYLRGLQ  633 (794)
Q Consensus       554 ~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~  633 (794)
                      ..+..+++|                                              +.|++++|++++..|..+..+++|+
T Consensus       464 ~~~~~l~~L----------------------------------------------~~L~l~~n~l~~~~~~~~~~l~~L~  497 (570)
T 2z63_A          464 DIFTELRNL----------------------------------------------TFLDLSQCQLEQLSPTAFNSLSSLQ  497 (570)
T ss_dssp             SCCTTCTTC----------------------------------------------CEEECTTSCCCEECTTTTTTCTTCC
T ss_pred             hhhhcccCC----------------------------------------------CEEECCCCccccCChhhhhcccCCC
Confidence            766665554                                              8999999999999899999999999


Q ss_pred             EEecccccccccCCccccccCCCCEEeCCCCcCcccCcc
Q 046398          634 SLNLSHNIFTGQIPENIGNLISIESLDFSTNQLSSKISQ  672 (794)
Q Consensus       634 ~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~  672 (794)
                      +|+|++|++++..|..+.++++|+.|++++|++++..|.
T Consensus       498 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~  536 (570)
T 2z63_A          498 VLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR  536 (570)
T ss_dssp             EEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred             EEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcc
Confidence            999999999988888899999999999999999998764

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=6.2e-46  Score=421.97  Aligned_cols=456  Identities=21%  Similarity=0.214  Sum_probs=320.2

Q ss_pred             CEEeCCCCCCCCCCCCcccCCCCCCCEEEcCCCCCCCCCcccccCCccccccccCccccccccccccccccCCCCccCCC
Q 046398          120 THLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRCLDLSWSEYALQVHSFSWLSGQIPNRLGNL  199 (794)
Q Consensus       120 ~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~~~~lp~~l~~l  199 (794)
                      ++||+++|+++  .+|..+.  ++|++|++++|.+++..|..|.++++|++|++++|.+          .+..|..|+++
T Consensus         3 ~~l~ls~n~l~--~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l----------~~~~~~~~~~l   68 (520)
T 2z7x_B            3 FLVDRSKNGLI--HVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRI----------QYLDISVFKFN   68 (520)
T ss_dssp             CEEECTTSCCS--SCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCC----------CEEEGGGGTTC
T ss_pred             ceEecCCCCcc--ccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCcc----------CCcChHHhhcc
Confidence            46677777776  3566554  6777777777777666556666666666666665553          22335555666


Q ss_pred             CCCCEEECcCCCCCCCCCccccCCCCCCeEeeeccCCCCCCCccccCCCCCCcEEEccCCCCCCCCCchhhhccCCCCEE
Q 046398          200 TSLRHLDLSANKFNSTTAGWLSKFNHLEFLSLSSNGLQGTISSIGLENLTSIKTIDLSLNFELGGPIPTSFVRLCELTSI  279 (794)
Q Consensus       200 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L  279 (794)
                      ++|++|++++|+++.. |..  .+++|++|++++|.+++.                         .+|..++++++|+.|
T Consensus        69 ~~L~~L~Ls~N~l~~l-p~~--~l~~L~~L~L~~N~l~~~-------------------------~~p~~~~~l~~L~~L  120 (520)
T 2z7x_B           69 QELEYLDLSHNKLVKI-SCH--PTVNLKHLDLSFNAFDAL-------------------------PICKEFGNMSQLKFL  120 (520)
T ss_dssp             TTCCEEECCSSCCCEE-ECC--CCCCCSEEECCSSCCSSC-------------------------CCCGGGGGCTTCCEE
T ss_pred             cCCCEEecCCCceeec-Ccc--ccCCccEEeccCCccccc-------------------------cchhhhccCCcceEE
Confidence            6666666666665532 222  455555555555555431                         223333334444444


Q ss_pred             EccCCCCCcchHHHHHhhhhcCcCCc--cEEEeecccc--cccccccccCCC-CCCEEEccCCcCcCCCCC-CcCCCCCC
Q 046398          280 DVSDVKLSQDLSQVLDILSACGASAL--ESLVFSSSQI--SGHLTSQLGQFK-SLRTLSLDDNCISGPLPP-ALGDLSSL  353 (794)
Q Consensus       280 ~l~~~~l~~~~~~~l~~l~~~~~~~L--~~L~L~~n~l--~~~~~~~l~~l~-~L~~L~L~~n~l~~~~p~-~l~~l~~L  353 (794)
                      ++++|.+++.   .+..++     +|  ++|++++|.+  .+..|..+..+. +...+++++|.+.+.++. .+..+++|
T Consensus       121 ~L~~n~l~~~---~~~~l~-----~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L  192 (520)
T 2z7x_B          121 GLSTTHLEKS---SVLPIA-----HLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANL  192 (520)
T ss_dssp             EEEESSCCGG---GGGGGT-----TSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEE
T ss_pred             EecCcccchh---hccccc-----cceeeEEEeecccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccce
Confidence            4444444331   111122     44  6666666666  555666555544 233567777777665543 45678888


Q ss_pred             CEEEccCCc-------ccccCCccccCCCCCCeEeccCcccccccChhhh--cCCCCCCEEECcCCcceeEcCCCC----
Q 046398          354 TRLDLSRNM-------LNGSIPLSLGKISHLEYLDLSNNKMNGTLSEIHF--VNLTKLTWFSASGNSLILQVNPNW----  420 (794)
Q Consensus       354 ~~L~Ls~n~-------l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~--~~l~~L~~L~ls~n~l~~~~~~~~----  420 (794)
                      +.|++++|.       +.+.+| .++.+++|+.|++++|.+.+.......  ...++|+.|++++|.+.+.++..+    
T Consensus       193 ~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~  271 (520)
T 2z7x_B          193 ELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYS  271 (520)
T ss_dssp             EECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCC
T ss_pred             eeccccccccccccceeecchh-hhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcc
Confidence            888888886       666665 678888888888888887653322111  124688888888888887777777    


Q ss_pred             -cCccccceEecccccCCCCCC-cccCCC---CCCCEEeccCCCCCCCcchhHHhccccceeccCcccCCCCCCCEEEcc
Q 046398          421 -VPPFQLKTLLLMSCHLGPQFP-SWLHSQ---KNLSVLDISNARISDTIPRWFWNSIFQLSGIIPESFKNFSNLEVLNLG  495 (794)
Q Consensus       421 -~~~~~L~~L~L~~n~l~~~~~-~~l~~l---~~L~~L~Ls~n~l~~~~p~~~~~~~~~l~~~~p~~l~~l~~L~~L~Ls  495 (794)
                       ..+..|+.+++++|.+  .+| ..+..+   .+|+.|++++|.+.+.                + ....+++|++|+++
T Consensus       272 ~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~----------------~-~~~~l~~L~~L~Ls  332 (520)
T 2z7x_B          272 GTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHM----------------L-CPSKISPFLHLDFS  332 (520)
T ss_dssp             SCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCC----------------C-CCSSCCCCCEEECC
T ss_pred             cccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCccccc----------------c-chhhCCcccEEEeE
Confidence             7788888999988887  455 344333   6799999999987652                1 12578899999999


Q ss_pred             CCcccccCChhhhhcCCCCcEEEcccccccc--cCCccccCCCCCCEEEccCCcCcccCCch-hhccccccccccccCCC
Q 046398          496 DNEFVGKIPTWMGEGFTSLLILILRSNKFDG--FLPIQLCRLTSLQILDVANNSLSGTMPGC-VNNFSAMATIDSSHQSN  572 (794)
Q Consensus       496 ~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~--~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~-~~~l~~L~~l~~~~~~~  572 (794)
                      +|++++.+|..+. .+++|+.|++++|++++  .+|..+..+++|++|++++|++++.+|.. +..              
T Consensus       333 ~n~l~~~~~~~~~-~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~--------------  397 (520)
T 2z7x_B          333 NNLLTDTVFENCG-HLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSW--------------  397 (520)
T ss_dssp             SSCCCTTTTTTCC-CCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCC--------------
T ss_pred             CCccChhhhhhhc-cCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhcc--------------
Confidence            9999987888776 79999999999999987  56678999999999999999998756543 333              


Q ss_pred             CcccccccccccccceeeEEEEeccchhhcccccceeEEEcCCCccccccChhhhcccCCCEEecccccccccCCccccc
Q 046398          573 AMSYFEVTAYDCEVLEDASIVMKGSMVEYNSILNLVRIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQIPENIGN  652 (794)
Q Consensus       573 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~  652 (794)
                                                      ++.|+.|++++|++++.+|..+.  ++|+.|+|++|+++ .+|..+..
T Consensus       398 --------------------------------l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~  442 (520)
T 2z7x_B          398 --------------------------------TKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVK  442 (520)
T ss_dssp             --------------------------------CTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGG
T ss_pred             --------------------------------CccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhc
Confidence                                            34458999999999988887765  79999999999999 89999999


Q ss_pred             cCCCCEEeCCCCcCcccCcc-cccCCCCCCEEeCcCCcccccCCC
Q 046398          653 LISIESLDFSTNQLSSKISQ-SMSSLSFLNHLNVSNNLLTGKIPS  696 (794)
Q Consensus       653 l~~L~~L~Ls~N~l~~~~p~-~l~~l~~L~~L~ls~N~l~g~iP~  696 (794)
                      +++|+.|+|++|+++. +|. .+..+++|++|++++|++++..|.
T Consensus       443 l~~L~~L~L~~N~l~~-l~~~~~~~l~~L~~L~l~~N~~~c~c~~  486 (520)
T 2z7x_B          443 LEALQELNVASNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCSCPR  486 (520)
T ss_dssp             CTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred             CCCCCEEECCCCcCCc-cCHHHhccCCcccEEECcCCCCcccCCc
Confidence            9999999999999996 555 499999999999999999987663

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=4.1e-45  Score=418.37  Aligned_cols=485  Identities=22%  Similarity=0.269  Sum_probs=349.3

Q ss_pred             CCCCEEeCCCCCCCCCCCCcccCCCCCCCEEEcCCCCCCCCCcccccCCccccccccCccccccccccccccccCCCCcc
Q 046398          117 KHLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRCLDLSWSEYALQVHSFSWLSGQIPNRL  196 (794)
Q Consensus       117 ~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~~~~lp~~l  196 (794)
                      +...+.|.+++.++  .+|..+.  ++|++|++++|++++..|..|+++++|++|++++|.+          .+..|..|
T Consensus         5 ~~~~~c~~~~~~l~--~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i----------~~~~~~~~   70 (549)
T 2z81_A            5 DASGVCDGRSRSFT--SIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRI----------NTIEGDAF   70 (549)
T ss_dssp             CTTSEEECTTSCCS--SCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCC----------CEECTTTT
T ss_pred             CCCceEECCCCccc--cccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCc----------CccChhhc
Confidence            34445788899998  5788664  7999999999999988899999999999999999874          44556889


Q ss_pred             CCCCCCCEEECcCCCCCCCCCccccCCCCCCeEeeeccCCCCC-CCccccCCCCCCcEEEccCCCCCCCCC-chhhhccC
Q 046398          197 GNLTSLRHLDLSANKFNSTTAGWLSKFNHLEFLSLSSNGLQGT-ISSIGLENLTSIKTIDLSLNFELGGPI-PTSFVRLC  274 (794)
Q Consensus       197 ~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~-i~~~~l~~l~~L~~L~L~~~~~~~~~~-~~~l~~l~  274 (794)
                      .++++|++|++++|.+++..+..++++++|++|++++|.+++. ++. .++++++|++|+++ ++...+.+ +..+.+++
T Consensus        71 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~-~~~~l~~L~~L~L~-~n~~~~~~~~~~~~~l~  148 (549)
T 2z81_A           71 YSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTS-LFPNLTNLQTLRIG-NVETFSEIRRIDFAGLT  148 (549)
T ss_dssp             TTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSC-SCTTCTTCCEEEEE-ESSSCCEECTTTTTTCC
T ss_pred             cccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhh-hhhccCCccEEECC-CCccccccCHhhhhccc
Confidence            9999999999999999999998899999999999999999853 344 78899999999998 44433344 35677788


Q ss_pred             CCCEEEccCCCCCcchHHHHHhhhhcCcCCccEEEeecccccccccccccCCCCCCEEEccCCcCcCCC--C-CCcCCCC
Q 046398          275 ELTSIDVSDVKLSQDLSQVLDILSACGASALESLVFSSSQISGHLTSQLGQFKSLRTLSLDDNCISGPL--P-PALGDLS  351 (794)
Q Consensus       275 ~L~~L~l~~~~l~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~--p-~~l~~l~  351 (794)
                      +|+.|++++|.+++..|..+..++     +|++|++++|.+.......+..+++|++|++++|.+++..  | .....++
T Consensus       149 ~L~~L~L~~n~l~~~~~~~l~~l~-----~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~  223 (549)
T 2z81_A          149 SLNELEIKALSLRNYQSQSLKSIR-----DIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSS  223 (549)
T ss_dssp             EEEEEEEEETTCCEECTTTTTTCS-----EEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCC
T ss_pred             ccCeeeccCCcccccChhhhhccc-----cCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhh
Confidence            788888877777776666655544     6777777777665443333455677777777777776532  1 1123456


Q ss_pred             CCCEEEccCCcccccCC----ccccCCCCCCeEeccCcccccccChhhhcCCCCCCEEECcCCcceeEcCCCCcCccccc
Q 046398          352 SLTRLDLSRNMLNGSIP----LSLGKISHLEYLDLSNNKMNGTLSEIHFVNLTKLTWFSASGNSLILQVNPNWVPPFQLK  427 (794)
Q Consensus       352 ~L~~L~Ls~n~l~~~~p----~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~  427 (794)
                      +|++|++++|.+++..+    ..+..+++|+.+++++|.+.+.... .     .             .....+....+++
T Consensus       224 ~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~-~-----~-------------~~~~~~~~l~~L~  284 (549)
T 2z81_A          224 PMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDF-N-----P-------------SESDVVSELGKVE  284 (549)
T ss_dssp             CCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCC-C-----C-------------CTTTCCCCCTTCC
T ss_pred             cccceeccccccchhHHHHHHHHhhhhccccccccccccccccccc-c-----c-------------cchhhhhhhcccc
Confidence            67777777776654332    2334556666666666665532110 0     0             0001122334455


Q ss_pred             eEecccccCCCC-----CCcccCCCCCCCEEeccCCCCCCCcchhHHhccccceeccCccc-CCCCCCCEEEccCCcccc
Q 046398          428 TLLLMSCHLGPQ-----FPSWLHSQKNLSVLDISNARISDTIPRWFWNSIFQLSGIIPESF-KNFSNLEVLNLGDNEFVG  501 (794)
Q Consensus       428 ~L~L~~n~l~~~-----~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~l~~~~p~~l-~~l~~L~~L~Ls~n~l~~  501 (794)
                      .+.+.++.+...     ++..+....+|+.|++++|++..                +|..+ ..+++|++|++++|++++
T Consensus       285 ~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~----------------ip~~~~~~l~~L~~L~Ls~N~l~~  348 (549)
T 2z81_A          285 TVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFL----------------VPCSFSQHLKSLEFLDLSENLMVE  348 (549)
T ss_dssp             EEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCC----------------CCHHHHHHCTTCCEEECCSSCCCH
T ss_pred             cccccccccchhhhcccchhhhhhcccceEEEeccCcccc----------------CCHHHHhcCccccEEEccCCcccc
Confidence            555555443321     12223345678999999998764                44443 367889999999999887


Q ss_pred             cCChhh--hhcCCCCcEEEcccccccccCC--ccccCCCCCCEEEccCCcCcccCCchhhccccccccccccCCCCcccc
Q 046398          502 KIPTWM--GEGFTSLLILILRSNKFDGFLP--IQLCRLTSLQILDVANNSLSGTMPGCVNNFSAMATIDSSHQSNAMSYF  577 (794)
Q Consensus       502 ~ip~~~--~~~l~~L~~L~L~~n~l~~~~p--~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~  577 (794)
                      .+|...  ...+++|+.|++++|++++..+  ..+..+++|++||+++|+++ .+|..+..+                  
T Consensus       349 ~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~------------------  409 (549)
T 2z81_A          349 EYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWP------------------  409 (549)
T ss_dssp             HHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCC------------------
T ss_pred             ccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhccc------------------
Confidence            665321  2367889999999999886532  45788899999999999887 556554443                  


Q ss_pred             cccccccccceeeEEEEeccchhhcccccceeEEEcCCCccccccChhhhcccCCCEEecccccccccCCccccccCCCC
Q 046398          578 EVTAYDCEVLEDASIVMKGSMVEYNSILNLVRIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQIPENIGNLISIE  657 (794)
Q Consensus       578 ~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~  657 (794)
                                                  +.|++|++++|+++ .+|..+  .++|++|+|++|++++.+    ..+++|+
T Consensus       410 ----------------------------~~L~~L~Ls~N~l~-~l~~~~--~~~L~~L~Ls~N~l~~~~----~~l~~L~  454 (549)
T 2z81_A          410 ----------------------------EKMRFLNLSSTGIR-VVKTCI--PQTLEVLDVSNNNLDSFS----LFLPRLQ  454 (549)
T ss_dssp             ----------------------------TTCCEEECTTSCCS-CCCTTS--CTTCSEEECCSSCCSCCC----CCCTTCC
T ss_pred             ----------------------------ccccEEECCCCCcc-cccchh--cCCceEEECCCCChhhhc----ccCChhc
Confidence                                        34489999999998 455444  368999999999999643    5789999


Q ss_pred             EEeCCCCcCcccCcccccCCCCCCEEeCcCCcccccCCCC-CccCccCcccccCCCc
Q 046398          658 SLDFSTNQLSSKISQSMSSLSFLNHLNVSNNLLTGKIPSS-TQLQSFDASCFVGNNL  713 (794)
Q Consensus       658 ~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~~-~~~~~~~~~~~~gn~l  713 (794)
                      +|+|++|+++ .+|. ...+++|++|++++|++++.+|.. ..+..+....+.+|.+
T Consensus       455 ~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~  509 (549)
T 2z81_A          455 ELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPW  509 (549)
T ss_dssp             EEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCB
T ss_pred             EEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCc
Confidence            9999999998 5776 578999999999999999988863 5667777777888843

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=3.1e-44  Score=421.71  Aligned_cols=369  Identities=17%  Similarity=0.227  Sum_probs=299.1

Q ss_pred             CCCCeEeeec--cCCCCCCCccccCCCCCCcEEEccCCCCCCC-----------------CCchhhh--ccCCCCEEEcc
Q 046398          224 NHLEFLSLSS--NGLQGTISSIGLENLTSIKTIDLSLNFELGG-----------------PIPTSFV--RLCELTSIDVS  282 (794)
Q Consensus       224 ~~L~~L~L~~--n~l~~~i~~~~l~~l~~L~~L~L~~~~~~~~-----------------~~~~~l~--~l~~L~~L~l~  282 (794)
                      ..++.+.+..  |.+++ +|. .++++++|++|+|+ ++.+++                 .+|..++  ++++|+.|+++
T Consensus       423 l~l~~l~l~~~~N~L~~-IP~-~l~~L~~L~~L~Ls-~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls  499 (876)
T 4ecn_A          423 ISLKDTQIGNLTNRITF-ISK-AIQRLTKLQIIYFA-NSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELY  499 (876)
T ss_dssp             CCCCTTTTTCCSCEEEE-ECG-GGGGCTTCCEEEEE-SCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEE
T ss_pred             cchhhceeccccCcccc-hhH-HHhcCCCCCEEECc-CCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECc
Confidence            3444454544  78887 888 89999999999999 677888                 3899877  99999999999


Q ss_pred             CCCCCcchHHHHHhhhhcCcCCccEEEeeccc-ccc-cccccccCC-------CCCCEEEccCCcCcCCCCC--CcCCCC
Q 046398          283 DVKLSQDLSQVLDILSACGASALESLVFSSSQ-ISG-HLTSQLGQF-------KSLRTLSLDDNCISGPLPP--ALGDLS  351 (794)
Q Consensus       283 ~~~l~~~~~~~l~~l~~~~~~~L~~L~L~~n~-l~~-~~~~~l~~l-------~~L~~L~L~~n~l~~~~p~--~l~~l~  351 (794)
                      +|.+.+.+|..+..++     +|++|++++|+ +++ .+|..++.+       ++|++|++++|.++ .+|.  .+++++
T Consensus       500 ~N~l~~~iP~~l~~L~-----~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~  573 (876)
T 4ecn_A          500 NCPNMTQLPDFLYDLP-----ELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMV  573 (876)
T ss_dssp             SCTTCCSCCGGGGGCS-----SCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCT
T ss_pred             CCCCCccChHHHhCCC-----CCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCC
Confidence            9999999998888777     99999999998 998 788766555       49999999999999 7888  899999


Q ss_pred             CCCEEEccCCcccccCCccccCCCCCCeEeccCcccccccChhhhcCCCCCCEEECcCCcceeEcCCCCcCccccceEec
Q 046398          352 SLTRLDLSRNMLNGSIPLSLGKISHLEYLDLSNNKMNGTLSEIHFVNLTKLTWFSASGNSLILQVNPNWVPPFQLKTLLL  431 (794)
Q Consensus       352 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L  431 (794)
                      +|++|++++|.++ .+| .++.+++|++|++++|++. .+|.                                      
T Consensus       574 ~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~--------------------------------------  612 (876)
T 4ecn_A          574 KLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPE--------------------------------------  612 (876)
T ss_dssp             TCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCT--------------------------------------
T ss_pred             CCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchH--------------------------------------
Confidence            9999999999999 888 8999999999999999887 4443                                      


Q ss_pred             ccccCCCCCCcccCCCCC-CCEEeccCCCCCCCcchhHHhccccceeccCcccCCCC--CCCEEEccCCcccccCChhh-
Q 046398          432 MSCHLGPQFPSWLHSQKN-LSVLDISNARISDTIPRWFWNSIFQLSGIIPESFKNFS--NLEVLNLGDNEFVGKIPTWM-  507 (794)
Q Consensus       432 ~~n~l~~~~~~~l~~l~~-L~~L~Ls~n~l~~~~p~~~~~~~~~l~~~~p~~l~~l~--~L~~L~Ls~n~l~~~ip~~~-  507 (794)
                                 .+..+++ |+.|++++|+++.                +|..+..++  +|+.|++++|++++.+|... 
T Consensus       613 -----------~l~~l~~~L~~L~Ls~N~L~~----------------lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~  665 (876)
T 4ecn_A          613 -----------DFCAFTDQVEGLGFSHNKLKY----------------IPNIFNAKSVYVMGSVDFSYNKIGSEGRNISC  665 (876)
T ss_dssp             -----------TSCEECTTCCEEECCSSCCCS----------------CCSCCCTTCSSCEEEEECCSSCTTTTSSSCSS
T ss_pred             -----------HHhhccccCCEEECcCCCCCc----------------CchhhhccccCCCCEEECcCCcCCCccccchh
Confidence                       2333445 6666666666652                444555544  49999999999998766422 


Q ss_pred             --h-hcCCCCcEEEcccccccccCCcc-ccCCCCCCEEEccCCcCcccCCchhhccccccccccccCCCCcccccccccc
Q 046398          508 --G-EGFTSLLILILRSNKFDGFLPIQ-LCRLTSLQILDVANNSLSGTMPGCVNNFSAMATIDSSHQSNAMSYFEVTAYD  583 (794)
Q Consensus       508 --~-~~l~~L~~L~L~~n~l~~~~p~~-~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~  583 (794)
                        . -.+++|+.|+|++|+++. +|.. +..+++|+.|+|++|+++ .+|..+.....                      
T Consensus       666 ~l~~~~~~~L~~L~Ls~N~L~~-lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~----------------------  721 (876)
T 4ecn_A          666 SMDDYKGINASTVTLSYNEIQK-FPTELFATGSPISTIILSNNLMT-SIPENSLKPKD----------------------  721 (876)
T ss_dssp             CTTTCCCCCEEEEECCSSCCCS-CCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTT----------------------
T ss_pred             hhccccCCCcCEEEccCCcCCc-cCHHHHccCCCCCEEECCCCcCC-ccChHHhcccc----------------------
Confidence              1 024589999999999994 5554 458999999999999999 66654332110                      


Q ss_pred             cccceeeEEEEeccchhhcccccceeEEEcCCCccccccChhhh--cccCCCEEecccccccccCCccccccCCCCEEeC
Q 046398          584 CEVLEDASIVMKGSMVEYNSILNLVRIIDVSKNNFSGEIPMELT--YLRGLQSLNLSHNIFTGQIPENIGNLISIESLDF  661 (794)
Q Consensus       584 ~~~l~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~--~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~L  661 (794)
                                      .....++.|+.|+|++|+++ .+|..+.  .+++|+.|+|++|++++ +|..++++++|+.|+|
T Consensus       722 ----------------~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~L  783 (876)
T 4ecn_A          722 ----------------GNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGI  783 (876)
T ss_dssp             ----------------SCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEEC
T ss_pred             ----------------ccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEEC
Confidence                            00112446799999999999 8899987  99999999999999996 8999999999999999


Q ss_pred             CC------CcCcccCcccccCCCCCCEEeCcCCcccccCCCCCccCccCcccccCCCc
Q 046398          662 ST------NQLSSKISQSMSSLSFLNHLNVSNNLLTGKIPSSTQLQSFDASCFVGNNL  713 (794)
Q Consensus       662 s~------N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gn~l  713 (794)
                      ++      |++.+.+|..+..+++|+.|+|++|++ +.||.. ....+....+.+|.+
T Consensus       784 s~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~-l~~~L~~LdLs~N~l  839 (876)
T 4ecn_A          784 RHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEK-LTPQLYILDIADNPN  839 (876)
T ss_dssp             CCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSC-CCSSSCEEECCSCTT
T ss_pred             CCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHh-hcCCCCEEECCCCCC
Confidence            77      889999999999999999999999999 899986 235666666777744

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=9.8e-44  Score=414.73  Aligned_cols=515  Identities=20%  Similarity=0.189  Sum_probs=291.4

Q ss_pred             CCCEEeCCCCCCCCCCCCcccCCCCCCCEEEcCCCCCCCCCcccccCCccccccccCccccccccccccccccCCCCccC
Q 046398          118 HLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRCLDLSWSEYALQVHSFSWLSGQIPNRLG  197 (794)
Q Consensus       118 ~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~~~~lp~~l~  197 (794)
                      ++++|||++|+|+.+ .+..|.++++|++|+|++|+|++..|.+|.++++|++|+|++|++.          +..+..|.
T Consensus        53 ~~~~LdLs~N~i~~l-~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~----------~l~~~~f~  121 (635)
T 4g8a_A           53 STKNLDLSFNPLRHL-GSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ----------SLALGAFS  121 (635)
T ss_dssp             TCCEEECTTSCCCEE-CTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC----------EECGGGGT
T ss_pred             CCCEEEeeCCCCCCC-CHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCC----------CCCHHHhc
Confidence            567777777777743 3456777777777777777777666666777777777777776643          22234567


Q ss_pred             CCCCCCEEECcCCCCCCCCCccccCCCCCCeEeeeccCCCCC-CCccccCCCCCCcEEEccCCCCCCCCCchhhhccCCC
Q 046398          198 NLTSLRHLDLSANKFNSTTAGWLSKFNHLEFLSLSSNGLQGT-ISSIGLENLTSIKTIDLSLNFELGGPIPTSFVRLCEL  276 (794)
Q Consensus       198 ~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~-i~~~~l~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L  276 (794)
                      ++++|++|++++|++++..+..|+++++|++|++++|.+++. +|. .+..+++|++|+++ ++.+.+..+..+..+.++
T Consensus       122 ~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~-~~~~l~~L~~L~L~-~N~l~~~~~~~l~~L~~l  199 (635)
T 4g8a_A          122 GLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPE-YFSNLTNLEHLDLS-SNKIQSIYCTDLRVLHQM  199 (635)
T ss_dssp             TCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCG-GGGGCTTCCEEECC-SSCCCEECGGGGHHHHTC
T ss_pred             CCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCch-hhccchhhhhhccc-Cccccccccccccchhhh
Confidence            777777777777777777666677777777777777777643 333 56677777777777 556666666666554443


Q ss_pred             ----CEEEccCCCCCcchHHHHHhhhhcCcCCccEEEeeccccccc-ccccccCCCCCCEEEccCCcC------cCCCCC
Q 046398          277 ----TSIDVSDVKLSQDLSQVLDILSACGASALESLVFSSSQISGH-LTSQLGQFKSLRTLSLDDNCI------SGPLPP  345 (794)
Q Consensus       277 ----~~L~l~~~~l~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~L~~n~l------~~~~p~  345 (794)
                          ..++++.|.+....+..+...      .++.+++.+|..... .+..+..++.++...+..+..      ......
T Consensus       200 ~~~~~~~~ls~n~l~~i~~~~~~~~------~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~  273 (635)
T 4g8a_A          200 PLLNLSLDLSLNPMNFIQPGAFKEI------RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKS  273 (635)
T ss_dssp             TTCCCEEECTTCCCCEECTTTTTTC------EEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTT
T ss_pred             hhhhhhhhcccCcccccCcccccch------hhhhhhhhcccccccccchhhcCCccccccccccccccccccccccccc
Confidence                356666666655443332221      345566665544321 223344455555444432211      111112


Q ss_pred             CcCCCCCCCEEEccCCccc---ccCCccccCCCCCCeEeccCcccccccChhhhcCCCCCCEEECcCCcceeEcCCCCcC
Q 046398          346 ALGDLSSLTRLDLSRNMLN---GSIPLSLGKISHLEYLDLSNNKMNGTLSEIHFVNLTKLTWFSASGNSLILQVNPNWVP  422 (794)
Q Consensus       346 ~l~~l~~L~~L~Ls~n~l~---~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~  422 (794)
                      .+.....+...++..+...   ...+..+..+.+++.+++.++.+.. +.  .+.....|+.|++.+|.+.....   ..
T Consensus       274 ~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~-~~--~~~~~~~L~~L~l~~~~~~~~~~---~~  347 (635)
T 4g8a_A          274 ALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIER-VK--DFSYNFGWQHLELVNCKFGQFPT---LK  347 (635)
T ss_dssp             TTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEE-CG--GGGSCCCCSEEEEESCEESSCCC---CB
T ss_pred             ccccccchhhhhhhhhhhcccccchhhhhhhhccccccccccccccc-cc--ccccchhhhhhhcccccccCcCc---cc
Confidence            2222333333333322211   1122233344455555555555442 11  23344455555555554432221   12


Q ss_pred             ccccceEecccccCCCCCCcccCCCCCCCEEeccCCCCCCCcchhHHhccccceeccCcccCCCCCCCEEEccCCccccc
Q 046398          423 PFQLKTLLLMSCHLGPQFPSWLHSQKNLSVLDISNARISDTIPRWFWNSIFQLSGIIPESFKNFSNLEVLNLGDNEFVGK  502 (794)
Q Consensus       423 ~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~  502 (794)
                      ...|+.+.+.+|.......  ...+++|+.+++++|.+...             +..+..+..+.+|+.+++..|.+.+ 
T Consensus       348 l~~L~~l~l~~n~~~~~~~--~~~l~~L~~L~ls~n~l~~~-------------~~~~~~~~~~~~L~~L~~~~~~~~~-  411 (635)
T 4g8a_A          348 LKSLKRLTFTSNKGGNAFS--EVDLPSLEFLDLSRNGLSFK-------------GCCSQSDFGTISLKYLDLSFNGVIT-  411 (635)
T ss_dssp             CTTCCEEEEESCCSCCBCC--CCBCTTCCEEECCSSCCBEE-------------EECCHHHHSCSCCCEEECCSCSEEE-
T ss_pred             chhhhhcccccccCCCCcc--cccccccccchhhccccccc-------------cccccchhhhhhhhhhhcccccccc-
Confidence            3345555555544432221  23445555555555554321             1222333344445555555444432 


Q ss_pred             CChhhhhcCCCCcEEEcccccccccCC-ccccCCCCCCEEEccCCcCcccCCchhhccccccccccccCCCCcccccccc
Q 046398          503 IPTWMGEGFTSLLILILRSNKFDGFLP-IQLCRLTSLQILDVANNSLSGTMPGCVNNFSAMATIDSSHQSNAMSYFEVTA  581 (794)
Q Consensus       503 ip~~~~~~l~~L~~L~L~~n~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~  581 (794)
                      ++..+. .+++|+.+++++|+.....+ ..+..+++++.+++++|.+.+..+..+..++.++.++...+...        
T Consensus       412 ~~~~~~-~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~--------  482 (635)
T 4g8a_A          412 MSSNFL-GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQ--------  482 (635)
T ss_dssp             ECSCCT-TCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEG--------
T ss_pred             cccccc-ccccccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccc--------
Confidence            222222 34445555554444433322 23444445555555555554444444444444444332221100        


Q ss_pred             cccccceeeEEEEeccchhhcccccceeEEEcCCCccccccChhhhcccCCCEEecccccccccCCccccccCCCCEEeC
Q 046398          582 YDCEVLEDASIVMKGSMVEYNSILNLVRIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQIPENIGNLISIESLDF  661 (794)
Q Consensus       582 ~~~~~l~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~L  661 (794)
                                   .+..+.....+++|++|||++|++++..|..|+++++|++|+|++|+|++..|..|+++++|++|||
T Consensus       483 -------------~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L  549 (635)
T 4g8a_A          483 -------------ENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDY  549 (635)
T ss_dssp             -------------GGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEEC
T ss_pred             -------------cccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEEC
Confidence                         0001112233556699999999999999999999999999999999999888889999999999999


Q ss_pred             CCCcCcccCcccccCC-CCCCEEeCcCCcccccCC
Q 046398          662 STNQLSSKISQSMSSL-SFLNHLNVSNNLLTGKIP  695 (794)
Q Consensus       662 s~N~l~~~~p~~l~~l-~~L~~L~ls~N~l~g~iP  695 (794)
                      ++|++++.+|+.+..+ ++|++|++++|++++...
T Consensus       550 s~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~  584 (635)
T 4g8a_A          550 SLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE  584 (635)
T ss_dssp             TTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGG
T ss_pred             CCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCC
Confidence            9999999999999988 689999999999987643

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=4.1e-45  Score=415.23  Aligned_cols=451  Identities=21%  Similarity=0.226  Sum_probs=330.4

Q ss_pred             cccceeecccccCCCCCCEEeCCCCCCCCCCCCcccCCCCCCCEEEcCCCCCCCCCcccccCCccccccccCcccccccc
Q 046398          103 SMLSGNVNPSLVDLKHLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRCLDLSWSEYALQV  182 (794)
Q Consensus       103 ~~l~g~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~~~~~~~~  182 (794)
                      +.++ .+|..+.  ++|++|+|++|.+++. .|..|..+++|++|+|++|++++..|+.|+++++|++|++++|.+.   
T Consensus        10 n~l~-~ip~~~~--~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~---   82 (520)
T 2z7x_B           10 NGLI-HVPKDLS--QKTTILNISQNYISEL-WTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV---   82 (520)
T ss_dssp             SCCS-SCCCSCC--TTCSEEECCSSCCCCC-CHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC---
T ss_pred             CCcc-ccccccc--ccccEEECCCCccccc-ChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee---
Confidence            4666 4677666  8999999999999975 5678999999999999999999888999999999999999999865   


Q ss_pred             ccccccccCCCCccCCCCCCCEEECcCCCCCC-CCCccccCCCCCCeEeeeccCCCCCCCccccCCCCCC--cEEEccCC
Q 046398          183 HSFSWLSGQIPNRLGNLTSLRHLDLSANKFNS-TTAGWLSKFNHLEFLSLSSNGLQGTISSIGLENLTSI--KTIDLSLN  259 (794)
Q Consensus       183 ~~~~~~~~~lp~~l~~l~~L~~L~Ls~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L--~~L~L~~~  259 (794)
                              .+|..  .+++|++|++++|.+++ ..|..++++++|++|++++|.+++.    .+..+++|  ++|+++ .
T Consensus        83 --------~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~----~~~~l~~L~L~~L~l~-~  147 (520)
T 2z7x_B           83 --------KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKS----SVLPIAHLNISKVLLV-L  147 (520)
T ss_dssp             --------EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCGG----GGGGGTTSCEEEEEEE-E
T ss_pred             --------ecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccchh----hccccccceeeEEEee-c
Confidence                    56766  89999999999999998 4688999999999999999998752    56777777  999998 5


Q ss_pred             CCC--CCCCchhhhccC-CCCEEEccCCCCCcchHHHHHhhhhcCcCCccEEEeeccc-------ccccccccccCCCCC
Q 046398          260 FEL--GGPIPTSFVRLC-ELTSIDVSDVKLSQDLSQVLDILSACGASALESLVFSSSQ-------ISGHLTSQLGQFKSL  329 (794)
Q Consensus       260 ~~~--~~~~~~~l~~l~-~L~~L~l~~~~l~~~~~~~l~~l~~~~~~~L~~L~L~~n~-------l~~~~~~~l~~l~~L  329 (794)
                      +.+  .+..|..+..+. +...+++++|.+.+.++..    ....+++|+.+++++|.       +.+.++ .++.+++|
T Consensus       148 n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~----~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L  222 (520)
T 2z7x_B          148 GETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDV----SVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKL  222 (520)
T ss_dssp             CTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCC----CCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTC
T ss_pred             ccccccccccccccccccceEEEEeccCcchhhhhhh----hhhcccceeeccccccccccccceeecchh-hhccccch
Confidence            566  667777776655 2334566666655433221    11123366666666665       454444 55666666


Q ss_pred             CEEEccCCcCcCCCCCCcC---CCCCCCEEEccCCcccccCCccc-----cCCCCCCeEeccCcccccccChhhhcCCCC
Q 046398          330 RTLSLDDNCISGPLPPALG---DLSSLTRLDLSRNMLNGSIPLSL-----GKISHLEYLDLSNNKMNGTLSEIHFVNLTK  401 (794)
Q Consensus       330 ~~L~L~~n~l~~~~p~~l~---~l~~L~~L~Ls~n~l~~~~p~~l-----~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~  401 (794)
                      +.|++++|.+++..+..+.   ..++|++|++++|.+++.+|..+     +.+++|+.+++++|.+  .+|...+..+  
T Consensus       223 ~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~--  298 (520)
T 2z7x_B          223 SNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEI--  298 (520)
T ss_dssp             CEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHH--
T ss_pred             hhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcc--
Confidence            6666666655532211110   12466666666666666666655     5666666666666665  3442222222  


Q ss_pred             CCEEECcCCcceeEcCCCCcCccccceEecccccCCCCCCcccCCCCCCCEEeccCCCCCCCcchhHHhccccceeccCc
Q 046398          402 LTWFSASGNSLILQVNPNWVPPFQLKTLLLMSCHLGPQFPSWLHSQKNLSVLDISNARISDTIPRWFWNSIFQLSGIIPE  481 (794)
Q Consensus       402 L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~l~~~~p~  481 (794)
                                         ....+|+.|++++|.+....  ....+++|++|++++|++++.               +|.
T Consensus       299 -------------------~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~---------------~~~  342 (520)
T 2z7x_B          299 -------------------FSNMNIKNFTVSGTRMVHML--CPSKISPFLHLDFSNNLLTDT---------------VFE  342 (520)
T ss_dssp             -------------------HHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTT---------------TTT
T ss_pred             -------------------cccCceeEEEcCCCcccccc--chhhCCcccEEEeECCccChh---------------hhh
Confidence                               00123444444444443221  125678889999999988763               556


Q ss_pred             ccCCCCCCCEEEccCCcccc--cCChhhhhcCCCCcEEEcccccccccCCc-cccCCCCCCEEEccCCcCcccCCchhhc
Q 046398          482 SFKNFSNLEVLNLGDNEFVG--KIPTWMGEGFTSLLILILRSNKFDGFLPI-QLCRLTSLQILDVANNSLSGTMPGCVNN  558 (794)
Q Consensus       482 ~l~~l~~L~~L~Ls~n~l~~--~ip~~~~~~l~~L~~L~L~~n~l~~~~p~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~  558 (794)
                      .+..+++|++|++++|++++  .+|..+. .+++|++|++++|++++.+|. .+..+++|++|++++|++++.+|..+. 
T Consensus       343 ~~~~l~~L~~L~L~~N~l~~l~~~~~~~~-~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~-  420 (520)
T 2z7x_B          343 NCGHLTELETLILQMNQLKELSKIAEMTT-QMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP-  420 (520)
T ss_dssp             TCCCCSSCCEEECCSSCCCBHHHHHHHHT-TCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC-
T ss_pred             hhccCCCCCEEEccCCccCccccchHHHh-hCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc-
Confidence            67888999999999999885  4455554 689999999999999985665 478899999999999999876664431 


Q ss_pred             cccccccccccCCCCcccccccccccccceeeEEEEeccchhhcccccceeEEEcCCCccccccChhhhcccCCCEEecc
Q 046398          559 FSAMATIDSSHQSNAMSYFEVTAYDCEVLEDASIVMKGSMVEYNSILNLVRIIDVSKNNFSGEIPMELTYLRGLQSLNLS  638 (794)
Q Consensus       559 l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls  638 (794)
                                                                     +.|+.||+++|+++ .+|..+..+++|++|+|+
T Consensus       421 -----------------------------------------------~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~  452 (520)
T 2z7x_B          421 -----------------------------------------------PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVA  452 (520)
T ss_dssp             -----------------------------------------------TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECC
T ss_pred             -----------------------------------------------ccCCEEECCCCccc-ccchhhhcCCCCCEEECC
Confidence                                                           23589999999999 889988899999999999


Q ss_pred             cccccccCCcc-ccccCCCCEEeCCCCcCcccCc
Q 046398          639 HNIFTGQIPEN-IGNLISIESLDFSTNQLSSKIS  671 (794)
Q Consensus       639 ~N~l~~~ip~~-l~~l~~L~~L~Ls~N~l~~~~p  671 (794)
                      +|+++ .+|.. +..+++|+.|++++|++++..+
T Consensus       453 ~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~c~  485 (520)
T 2z7x_B          453 SNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP  485 (520)
T ss_dssp             SSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             CCcCC-ccCHHHhccCCcccEEECcCCCCcccCC
Confidence            99999 67765 9999999999999999998654

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=1.6e-44  Score=418.09  Aligned_cols=458  Identities=15%  Similarity=0.190  Sum_probs=350.5

Q ss_pred             ccccccccCccccccccccccccccCCCCccCCCCCCCEEECcCCCC------CC------CCCccccCCCCCCeEeeec
Q 046398          166 SNLRCLDLSWSEYALQVHSFSWLSGQIPNRLGNLTSLRHLDLSANKF------NS------TTAGWLSKFNHLEFLSLSS  233 (794)
Q Consensus       166 ~~L~~L~Ls~~~~~~~~~~~~~~~~~lp~~l~~l~~L~~L~Ls~n~l------~~------~~~~~l~~l~~L~~L~L~~  233 (794)
                      .+++.|+|+++.          +.|.+|..++++++|++|+|++|.+      .+      .+|...  +.+|+ +++++
T Consensus        81 ~~V~~L~L~~~~----------l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~l~-l~l~~  147 (636)
T 4eco_A           81 GRVTGLSLEGFG----------ASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ--KQKMR-MHYQK  147 (636)
T ss_dssp             CCEEEEECTTSC----------CEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHHHH-THHHH
T ss_pred             CCEEEEEecCcc----------cCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHH--HHHHH-hhHHH
Confidence            478889998777          5688999999999999999999965      22      222222  34566 77777


Q ss_pred             cCCCCCCCccccCC-CCCCcEEEccCCCCCCCCCchhhhccCCCCEEEcc--CCCCCcchHHHHHhhhhcCcCCccEEEe
Q 046398          234 NGLQGTISSIGLEN-LTSIKTIDLSLNFELGGPIPTSFVRLCELTSIDVS--DVKLSQDLSQVLDILSACGASALESLVF  310 (794)
Q Consensus       234 n~l~~~i~~~~l~~-l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~--~~~l~~~~~~~l~~l~~~~~~~L~~L~L  310 (794)
                      |.+.+.++. .+.. +..+..+++.. ..+.      ......++.+.+.  .|++++ +|..+..++     +|++|++
T Consensus       148 ~~l~~~~~~-~~~~~~~~l~~~~l~~-~~~~------~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~-----~L~~L~L  213 (636)
T 4eco_A          148 TFVDYDPRE-DFSDLIKDCINSDPQQ-KSIK------KSSRITLKDTQIGQLSNNITF-VSKAVMRLT-----KLRQFYM  213 (636)
T ss_dssp             HHTCCCGGG-GSCHHHHHHHHHCTTS-CCCC------CCCCCCCCTTTTTCCSCEEEE-ECGGGGGCT-----TCCEEEE
T ss_pred             hhhccCchh-hHHHHHHHHhhcCccc-cccc------cccccchhhhhhccccCCCcc-CCHHHhccc-----CCCEEEC
Confidence            777766655 3321 11111111110 0000      0001112222221  345555 555555554     6777777


Q ss_pred             eccccccc-----------------cccccc--CCCCCCEEEccCCcCcCCCCCCcCCCCCCCEEEccCCc-ccc-cCCc
Q 046398          311 SSSQISGH-----------------LTSQLG--QFKSLRTLSLDDNCISGPLPPALGDLSSLTRLDLSRNM-LNG-SIPL  369 (794)
Q Consensus       311 ~~n~l~~~-----------------~~~~l~--~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~-l~~-~~p~  369 (794)
                      ++|.+++.                 +|..++  ++++|++|++++|.+.+.+|..++++++|++|++++|+ +++ .+|.
T Consensus       214 s~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~  293 (636)
T 4eco_A          214 GNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKD  293 (636)
T ss_dssp             ESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHH
T ss_pred             cCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchH
Confidence            77777664                 888888  99999999999999999999999999999999999998 888 7888


Q ss_pred             cccCC------CCCCeEeccCcccccccCh-hhhcCCCCCCEEECcCCcceeEcCCCCcCccccceEecccccCCCCCCc
Q 046398          370 SLGKI------SHLEYLDLSNNKMNGTLSE-IHFVNLTKLTWFSASGNSLILQVNPNWVPPFQLKTLLLMSCHLGPQFPS  442 (794)
Q Consensus       370 ~l~~l------~~L~~L~Ls~N~l~~~~~~-~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~  442 (794)
                      .++.+      ++|++|++++|+++ .+|. ..+.++++|+.|++++|.+.+.++ .+..+++|++|++++|.+. .+|.
T Consensus       294 ~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~  370 (636)
T 4eco_A          294 DWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPA  370 (636)
T ss_dssp             HHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCT
T ss_pred             HHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccH
Confidence            88776      89999999999998 6775 468899999999999999998888 8888899999999999988 7888


Q ss_pred             ccCCCCC-CCEEeccCCCCCCCcchhHHhccccceeccCcccCCCC--CCCEEEccCCcccccCChhhhh------cCCC
Q 046398          443 WLHSQKN-LSVLDISNARISDTIPRWFWNSIFQLSGIIPESFKNFS--NLEVLNLGDNEFVGKIPTWMGE------GFTS  513 (794)
Q Consensus       443 ~l~~l~~-L~~L~Ls~n~l~~~~p~~~~~~~~~l~~~~p~~l~~l~--~L~~L~Ls~n~l~~~ip~~~~~------~l~~  513 (794)
                      .+..+++ |++|++++|+++.                +|..+..++  +|++|++++|++++.+|..+..      .+++
T Consensus       371 ~l~~l~~~L~~L~Ls~N~l~~----------------lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~  434 (636)
T 4eco_A          371 NFCGFTEQVENLSFAHNKLKY----------------IPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGIN  434 (636)
T ss_dssp             TSEEECTTCCEEECCSSCCSS----------------CCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCC
T ss_pred             hhhhhcccCcEEEccCCcCcc----------------cchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCC
Confidence            8999999 9999999999884                555565544  8999999999999888876541      3679


Q ss_pred             CcEEEcccccccccCCccccCCCCCCEEEccCCcCcccCCchhhccccccccccccCCCCcccccccccccccceeeEEE
Q 046398          514 LLILILRSNKFDGFLPIQLCRLTSLQILDVANNSLSGTMPGCVNNFSAMATIDSSHQSNAMSYFEVTAYDCEVLEDASIV  593 (794)
Q Consensus       514 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~  593 (794)
                      |+.|++++|++++..+..+..+++|++|++++|+++ .+|........                                
T Consensus       435 L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~--------------------------------  481 (636)
T 4eco_A          435 VSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDEN--------------------------------  481 (636)
T ss_dssp             EEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETT--------------------------------
T ss_pred             CCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhcccc--------------------------------
Confidence            999999999999554445667999999999999998 55543221100                                


Q ss_pred             EeccchhhcccccceeEEEcCCCccccccChhhh--cccCCCEEecccccccccCCccccccCCCCEEeC------CCCc
Q 046398          594 MKGSMVEYNSILNLVRIIDVSKNNFSGEIPMELT--YLRGLQSLNLSHNIFTGQIPENIGNLISIESLDF------STNQ  665 (794)
Q Consensus       594 ~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~--~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~L------s~N~  665 (794)
                            .....++.|+.|++++|+++ .+|..+.  .+++|+.|+|++|++++ +|..+.++++|+.|+|      ++|+
T Consensus       482 ------~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~  553 (636)
T 4eco_A          482 ------ENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNR  553 (636)
T ss_dssp             ------EECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCB
T ss_pred             ------ccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCc
Confidence                  00112346799999999999 7898887  99999999999999997 9999999999999999      5688


Q ss_pred             CcccCcccccCCCCCCEEeCcCCcccccCCCCCccCccCcccccCCC
Q 046398          666 LSSKISQSMSSLSFLNHLNVSNNLLTGKIPSSTQLQSFDASCFVGNN  712 (794)
Q Consensus       666 l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gn~  712 (794)
                      +.+.+|..+..+++|++|++++|++ +.||..- ...+....+.+|.
T Consensus       554 l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~-~~~L~~L~Ls~N~  598 (636)
T 4eco_A          554 TLREWPEGITLCPSLTQLQIGSNDI-RKVNEKI-TPNISVLDIKDNP  598 (636)
T ss_dssp             CCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCC-CTTCCEEECCSCT
T ss_pred             ccccChHHHhcCCCCCEEECCCCcC-CccCHhH-hCcCCEEECcCCC
Confidence            9999999999999999999999999 8899752 3566666777773

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=3e-42  Score=394.89  Aligned_cols=461  Identities=20%  Similarity=0.228  Sum_probs=311.2

Q ss_pred             CCCCCEEeCCCCCCCCCCCCcccCCCCCCCEEEcCCCCCCCCCcccccCCccccccccCccccccccccccccccCCCCc
Q 046398          116 LKHLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRCLDLSWSEYALQVHSFSWLSGQIPNR  195 (794)
Q Consensus       116 l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~~~~lp~~  195 (794)
                      +...+++++++|+++  .+|..+.  ++|++|++++|.+++..|..|+++++|++|++++|.+          .+..|..
T Consensus        30 ~~~~~~l~ls~~~L~--~ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l----------~~~~~~~   95 (562)
T 3a79_B           30 NELESMVDYSNRNLT--HVPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRI----------RSLDFHV   95 (562)
T ss_dssp             ---CCEEECTTSCCC--SCCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCC----------CEECTTT
T ss_pred             cCCCcEEEcCCCCCc--cCCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCC----------CcCCHHH
Confidence            334478888888887  3676553  6888888888888876667777777777777777663          3344666


Q ss_pred             cCCCCCCCEEECcCCCCCCCCCccccCCCCCCeEeeeccCCCCC-CCccccCCCCCCcEEEccCCCCCCCCCchhhhccC
Q 046398          196 LGNLTSLRHLDLSANKFNSTTAGWLSKFNHLEFLSLSSNGLQGT-ISSIGLENLTSIKTIDLSLNFELGGPIPTSFVRLC  274 (794)
Q Consensus       196 l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~-i~~~~l~~l~~L~~L~L~~~~~~~~~~~~~l~~l~  274 (794)
                      |.++++|++|++++|+++.....   .+++|++|++++|.+++. +|. .++++++|++|+++ ++.+.+.   .+..++
T Consensus        96 ~~~l~~L~~L~Ls~N~l~~lp~~---~l~~L~~L~Ls~N~l~~l~~p~-~~~~l~~L~~L~L~-~n~l~~~---~~~~l~  167 (562)
T 3a79_B           96 FLFNQDLEYLDVSHNRLQNISCC---PMASLRHLDLSFNDFDVLPVCK-EFGNLTKLTFLGLS-AAKFRQL---DLLPVA  167 (562)
T ss_dssp             TTTCTTCCEEECTTSCCCEECSC---CCTTCSEEECCSSCCSBCCCCG-GGGGCTTCCEEEEE-CSBCCTT---TTGGGT
T ss_pred             hCCCCCCCEEECCCCcCCccCcc---ccccCCEEECCCCCccccCchH-hhcccCcccEEecC-CCccccC---chhhhh
Confidence            77777777777777777643332   566677777776666531 222 44455555555554 2233221   111111


Q ss_pred             CCCEEEccCCCCCcchHHHHHhhhhcCcCCccEEEeecccc--cccccccccCCC--CCCEEEccCCcCcCCCCC-CcCC
Q 046398          275 ELTSIDVSDVKLSQDLSQVLDILSACGASALESLVFSSSQI--SGHLTSQLGQFK--SLRTLSLDDNCISGPLPP-ALGD  349 (794)
Q Consensus       275 ~L~~L~l~~~~l~~~~~~~l~~l~~~~~~~L~~L~L~~n~l--~~~~~~~l~~l~--~L~~L~L~~n~l~~~~p~-~l~~  349 (794)
                      +|                           +|++|++++|.+  ++..|..+..++  .+ .+++++|.+.+.++. .+..
T Consensus       168 ~L---------------------------~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l-~l~l~~n~~~~~~~~~~~~~  219 (562)
T 3a79_B          168 HL---------------------------HLSCILLDLVSYHIKGGETESLQIPNTTVL-HLVFHPNSLFSVQVNMSVNA  219 (562)
T ss_dssp             TS---------------------------CEEEEEEEESSCCCCSSSCCEEEECCEEEE-EEEECSSSCCCCCCEEEESS
T ss_pred             hc---------------------------eeeEEEeecccccccccCcccccccCcceE-EEEecCccchhhhhhhcccc
Confidence            11                           226666666666  555555555443  22 456666666654443 3445


Q ss_pred             CCCCCEEEccCCc-----ccccCCccccCCCCCCeEeccCcccccccChh--hhcCCCCCCEEECcCCcceeEcCCCC--
Q 046398          350 LSSLTRLDLSRNM-----LNGSIPLSLGKISHLEYLDLSNNKMNGTLSEI--HFVNLTKLTWFSASGNSLILQVNPNW--  420 (794)
Q Consensus       350 l~~L~~L~Ls~n~-----l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~--  420 (794)
                      +++|+.+++++|.     +.+. ...+..+++|+.++++++.+.+.....  .....++|+.|++++|.+.+.+|..+  
T Consensus       220 l~~L~~L~l~~n~~~~~~l~~~-~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~  298 (562)
T 3a79_B          220 LGHLQLSNIKLNDENCQRLMTF-LSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFT  298 (562)
T ss_dssp             EEEEEEEEEECCSTTHHHHHHH-HHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCC
T ss_pred             cceEEEecccccccccchHHHH-HHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhh
Confidence            6777777777764     2222 234566777777777776655321110  11223477778888777776666655  


Q ss_pred             ---cCccccceEecccccCCCCCC-cccC---CCCCCCEEeccCCCCCCCcchhHHhccccceeccCcccCCCCCCCEEE
Q 046398          421 ---VPPFQLKTLLLMSCHLGPQFP-SWLH---SQKNLSVLDISNARISDTIPRWFWNSIFQLSGIIPESFKNFSNLEVLN  493 (794)
Q Consensus       421 ---~~~~~L~~L~L~~n~l~~~~~-~~l~---~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~l~~~~p~~l~~l~~L~~L~  493 (794)
                         ..+..|+.+++..+.+  .+| .++.   ...+|+.|++++|.+...                + ....+++|++|+
T Consensus       299 ~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l~~n~~~~~----------------~-~~~~l~~L~~L~  359 (562)
T 3a79_B          299 YSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLSISDTPFIHM----------------V-CPPSPSSFTFLN  359 (562)
T ss_dssp             CCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSEEEEESSCCCCC----------------C-CCSSCCCCCEEE
T ss_pred             cccccchheehhhccccee--ecChhhhhhhhccCcceEEEccCCCcccc----------------c-CccCCCCceEEE
Confidence               4444555555555554  334 2221   125789999999987641                1 125788999999


Q ss_pred             ccCCcccccCChhhhhcCCCCcEEEccccccccc--CCccccCCCCCCEEEccCCcCcccCCch-hhccccccccccccC
Q 046398          494 LGDNEFVGKIPTWMGEGFTSLLILILRSNKFDGF--LPIQLCRLTSLQILDVANNSLSGTMPGC-VNNFSAMATIDSSHQ  570 (794)
Q Consensus       494 Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~--~p~~~~~l~~L~~L~Ls~N~l~~~~p~~-~~~l~~L~~l~~~~~  570 (794)
                      +++|++++.+|..+. .+++|+.|++++|++++.  +|..+..+++|++|++++|++++.+|.. +..            
T Consensus       360 l~~n~l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~------------  426 (562)
T 3a79_B          360 FTQNVFTDSVFQGCS-TLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAW------------  426 (562)
T ss_dssp             CCSSCCCTTTTTTCC-SCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCC------------
T ss_pred             CCCCccccchhhhhc-ccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcC------------
Confidence            999999987887775 789999999999999873  3567889999999999999998756543 333            


Q ss_pred             CCCcccccccccccccceeeEEEEeccchhhcccccceeEEEcCCCccccccChhhhcccCCCEEecccccccccCCccc
Q 046398          571 SNAMSYFEVTAYDCEVLEDASIVMKGSMVEYNSILNLVRIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQIPENI  650 (794)
Q Consensus       571 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l  650 (794)
                                                        ++.|+.|++++|++++.+|..+.  ++|+.|+|++|+++ .+|..+
T Consensus       427 ----------------------------------l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~  469 (562)
T 3a79_B          427 ----------------------------------AESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDV  469 (562)
T ss_dssp             ----------------------------------CTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTT
T ss_pred             ----------------------------------cccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhh
Confidence                                              33458999999999988887665  79999999999999 889888


Q ss_pred             cccCCCCEEeCCCCcCcccCccc-ccCCCCCCEEeCcCCcccccCCCC
Q 046398          651 GNLISIESLDFSTNQLSSKISQS-MSSLSFLNHLNVSNNLLTGKIPSS  697 (794)
Q Consensus       651 ~~l~~L~~L~Ls~N~l~~~~p~~-l~~l~~L~~L~ls~N~l~g~iP~~  697 (794)
                      ..+++|+.|+|++|++++ +|.. +..+++|+.|++++|++++.+|..
T Consensus       470 ~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~L~~L~l~~N~~~c~c~~~  516 (562)
T 3a79_B          470 THLQALQELNVASNQLKS-VPDGVFDRLTSLQYIWLHDNPWDCTCPGI  516 (562)
T ss_dssp             TSSCCCSEEECCSSCCCC-CCTTSTTTCTTCCCEECCSCCBCCCHHHH
T ss_pred             cCCCCCCEEECCCCCCCC-CCHHHHhcCCCCCEEEecCCCcCCCcchH
Confidence            899999999999999995 5555 999999999999999999987743

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=7.9e-40  Score=381.69  Aligned_cols=527  Identities=20%  Similarity=0.194  Sum_probs=401.2

Q ss_pred             EeCCCCCCCCCCCCcccCCCCCCCEEEcCCCCCCCCCcccccCCccccccccCccccccccccccccccCCCCccCCCCC
Q 046398          122 LDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRCLDLSWSEYALQVHSFSWLSGQIPNRLGNLTS  201 (794)
Q Consensus       122 L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~~~~lp~~l~~l~~  201 (794)
                      .+-++-+++  .+|..+.  +++++|||++|+|++..|.+|.++++|++|+|++|.+.          +..|..|.++++
T Consensus        36 ~~c~~~~l~--~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~----------~i~~~~f~~L~~  101 (635)
T 4g8a_A           36 YQCMELNFY--KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ----------TIEDGAYQSLSH  101 (635)
T ss_dssp             EECTTSCCS--SCCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCC----------EECTTTTTTCTT
T ss_pred             EECCCCCcC--ccCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCC----------CcChhHhcCCCC
Confidence            344445566  4677653  47999999999999877889999999999999999854          333567999999


Q ss_pred             CCEEECcCCCCCCCCCccccCCCCCCeEeeeccCCCCCCCccccCCCCCCcEEEccCCCCCC-CCCchhhhccCCCCEEE
Q 046398          202 LRHLDLSANKFNSTTAGWLSKFNHLEFLSLSSNGLQGTISSIGLENLTSIKTIDLSLNFELG-GPIPTSFVRLCELTSID  280 (794)
Q Consensus       202 L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~~~~~~-~~~~~~l~~l~~L~~L~  280 (794)
                      |++|+|++|++++..+..|.++++|++|++++|.+++ ++...++++++|++|+++ +|.+. ...|..+..+++|+.|+
T Consensus       102 L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~-l~~~~~~~L~~L~~L~Ls-~N~l~~~~~~~~~~~l~~L~~L~  179 (635)
T 4g8a_A          102 LSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLAS-LENFPIGHLKTLKELNVA-HNLIQSFKLPEYFSNLTNLEHLD  179 (635)
T ss_dssp             CCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCC-STTCCCTTCTTCCEEECC-SSCCCCCCCCGGGGGCTTCCEEE
T ss_pred             CCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCC-CChhhhhcCcccCeeccc-cCccccCCCchhhccchhhhhhc
Confidence            9999999999999999999999999999999999985 454479999999999999 55554 46788999999999999


Q ss_pred             ccCCCCCcchHHHHHhhhhcCcCCccEEEeecccccccccccccCCCCCCEEEccCCcCcCC-CCCCcCCCCCCCEEEcc
Q 046398          281 VSDVKLSQDLSQVLDILSACGASALESLVFSSSQISGHLTSQLGQFKSLRTLSLDDNCISGP-LPPALGDLSSLTRLDLS  359 (794)
Q Consensus       281 l~~~~l~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~-~p~~l~~l~~L~~L~Ls  359 (794)
                      +++|++++..+..+..+.... .....++++.|.++...+..+. ...++.+++.+|..... .+..+..+..++...+.
T Consensus       180 L~~N~l~~~~~~~l~~L~~l~-~~~~~~~ls~n~l~~i~~~~~~-~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~  257 (635)
T 4g8a_A          180 LSSNKIQSIYCTDLRVLHQMP-LLNLSLDLSLNPMNFIQPGAFK-EIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLV  257 (635)
T ss_dssp             CCSSCCCEECGGGGHHHHTCT-TCCCEEECTTCCCCEECTTTTT-TCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEE
T ss_pred             ccCccccccccccccchhhhh-hhhhhhhcccCcccccCccccc-chhhhhhhhhcccccccccchhhcCCccccccccc
Confidence            999999988887776665111 1345788999999876665544 34577888888765422 22345566777766664


Q ss_pred             CCcc------cccCCccccCCCCCCeEeccCccccccc--ChhhhcCCCCCCEEECcCCcceeEcCCCCcCccccceEec
Q 046398          360 RNML------NGSIPLSLGKISHLEYLDLSNNKMNGTL--SEIHFVNLTKLTWFSASGNSLILQVNPNWVPPFQLKTLLL  431 (794)
Q Consensus       360 ~n~l------~~~~p~~l~~l~~L~~L~Ls~N~l~~~~--~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L  431 (794)
                      .+..      .......+..+..+...++..+......  ....+....+++.+++.++.+....  .+.....++.|++
T Consensus       258 ~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~--~~~~~~~L~~L~l  335 (635)
T 4g8a_A          258 LGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVK--DFSYNFGWQHLEL  335 (635)
T ss_dssp             EECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECG--GGGSCCCCSEEEE
T ss_pred             ccccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhccccccccccccccccc--ccccchhhhhhhc
Confidence            3332      2223334445556666666554432111  1124667788999999998876543  3455668999999


Q ss_pred             ccccCCCCCCcccCCCCCCCEEeccCCCCCCCcchhHHhccccceeccCcccCCCCCCCEEEccCCcccc--cCChhhhh
Q 046398          432 MSCHLGPQFPSWLHSQKNLSVLDISNARISDTIPRWFWNSIFQLSGIIPESFKNFSNLEVLNLGDNEFVG--KIPTWMGE  509 (794)
Q Consensus       432 ~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~--~ip~~~~~  509 (794)
                      .+|.+....+.   .+..|+.+++.+|.+...                 .....+++|+.|++++|.+..  ..+.... 
T Consensus       336 ~~~~~~~~~~~---~l~~L~~l~l~~n~~~~~-----------------~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~-  394 (635)
T 4g8a_A          336 VNCKFGQFPTL---KLKSLKRLTFTSNKGGNA-----------------FSEVDLPSLEFLDLSRNGLSFKGCCSQSDF-  394 (635)
T ss_dssp             ESCEESSCCCC---BCTTCCEEEEESCCSCCB-----------------CCCCBCTTCCEEECCSSCCBEEEECCHHHH-
T ss_pred             ccccccCcCcc---cchhhhhcccccccCCCC-----------------cccccccccccchhhccccccccccccchh-
Confidence            99988765543   457789999999987642                 234578999999999998853  3455555 


Q ss_pred             cCCCCcEEEcccccccccCCccccCCCCCCEEEccCCcCcccCC-chhhccccccccccccCCCCcccccccccccccce
Q 046398          510 GFTSLLILILRSNKFDGFLPIQLCRLTSLQILDVANNSLSGTMP-GCVNNFSAMATIDSSHQSNAMSYFEVTAYDCEVLE  588 (794)
Q Consensus       510 ~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~  588 (794)
                      .+.+|+.+++..|..... +..+..+++|+.+++++|+.....+ ..+.+++.+..++...+..                
T Consensus       395 ~~~~L~~L~~~~~~~~~~-~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l----------------  457 (635)
T 4g8a_A          395 GTISLKYLDLSFNGVITM-SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHT----------------  457 (635)
T ss_dssp             SCSCCCEEECCSCSEEEE-CSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCC----------------
T ss_pred             hhhhhhhhhccccccccc-cccccccccccchhhhhcccccccccccccccccccccccccccc----------------
Confidence            688999999999998754 5578899999999999998876654 4566777776665443321                


Q ss_pred             eeEEEEeccchhhcccccceeEEEcCCCcc-ccccChhhhcccCCCEEecccccccccCCccccccCCCCEEeCCCCcCc
Q 046398          589 DASIVMKGSMVEYNSILNLVRIIDVSKNNF-SGEIPMELTYLRGLQSLNLSHNIFTGQIPENIGNLISIESLDFSTNQLS  667 (794)
Q Consensus       589 ~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l-~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~  667 (794)
                            .+........++.++.|++++|++ .+.+|..+..+++|++|+|++|++++.+|..|+++++|+.|+|++|+|+
T Consensus       458 ------~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~  531 (635)
T 4g8a_A          458 ------RVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFF  531 (635)
T ss_dssp             ------EECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCC
T ss_pred             ------ccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCC
Confidence                  112223344577889999999985 4567888999999999999999999999999999999999999999999


Q ss_pred             ccCcccccCCCCCCEEeCcCCcccccCCCC-Ccc-CccCcccccCCC
Q 046398          668 SKISQSMSSLSFLNHLNVSNNLLTGKIPSS-TQL-QSFDASCFVGNN  712 (794)
Q Consensus       668 ~~~p~~l~~l~~L~~L~ls~N~l~g~iP~~-~~~-~~~~~~~~~gn~  712 (794)
                      +..|..+..+++|++||+++|++++.+|.. ..+ .++....+.+|.
T Consensus       532 ~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np  578 (635)
T 4g8a_A          532 SLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND  578 (635)
T ss_dssp             BCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCC
T ss_pred             CCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCC
Confidence            999999999999999999999999998864 222 456666677883

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=2.1e-41  Score=387.97  Aligned_cols=448  Identities=19%  Similarity=0.215  Sum_probs=322.4

Q ss_pred             ccceeecccccCCCCCCEEeCCCCCCCCCCCCcccCCCCCCCEEEcCCCCCCCCCcccccCCccccccccCccccccccc
Q 046398          104 MLSGNVNPSLVDLKHLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRCLDLSWSEYALQVH  183 (794)
Q Consensus       104 ~l~g~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~~~~~~~~~  183 (794)
                      .+++ +|..+.  ++|++|+|++|.+++. .|..|+.+++|++|+|++|++++..|+.|+++++|++|++++|.+.    
T Consensus        42 ~L~~-ip~~~~--~~L~~L~Ls~N~i~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~----  113 (562)
T 3a79_B           42 NLTH-VPKDLP--PRTKALSLSQNSISEL-RMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ----  113 (562)
T ss_dssp             CCCS-CCTTSC--TTCCEEECCSSCCCCC-CGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC----
T ss_pred             CCcc-CCCCCC--CCcCEEECCCCCcccc-ChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC----
Confidence            5664 666554  8999999999999975 5678999999999999999999888999999999999999999865    


Q ss_pred             cccccccCCCCccCCCCCCCEEECcCCCCCCC-CCccccCCCCCCeEeeeccCCCCCCCccccCCCCCC--cEEEccCCC
Q 046398          184 SFSWLSGQIPNRLGNLTSLRHLDLSANKFNST-TAGWLSKFNHLEFLSLSSNGLQGTISSIGLENLTSI--KTIDLSLNF  260 (794)
Q Consensus       184 ~~~~~~~~lp~~l~~l~~L~~L~Ls~n~l~~~-~~~~l~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L--~~L~L~~~~  260 (794)
                             .+|..  .+++|++|++++|++++. .|..++++++|++|++++|.+++.    .+..+++|  ++|+++ .+
T Consensus       114 -------~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~----~~~~l~~L~L~~L~L~-~n  179 (562)
T 3a79_B          114 -------NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL----DLLPVAHLHLSCILLD-LV  179 (562)
T ss_dssp             -------EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT----TTGGGTTSCEEEEEEE-ES
T ss_pred             -------ccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC----chhhhhhceeeEEEee-cc
Confidence                   56766  899999999999999985 468899999999999999999853    45555555  999999 66


Q ss_pred             CC--CCCCchhhhccC-CCCEEEccCCCCCcchHHHHHhhhhcCcCCccEEEeeccc-----ccccccccccCCCCCCEE
Q 046398          261 EL--GGPIPTSFVRLC-ELTSIDVSDVKLSQDLSQVLDILSACGASALESLVFSSSQ-----ISGHLTSQLGQFKSLRTL  332 (794)
Q Consensus       261 ~~--~~~~~~~l~~l~-~L~~L~l~~~~l~~~~~~~l~~l~~~~~~~L~~L~L~~n~-----l~~~~~~~l~~l~~L~~L  332 (794)
                      .+  .+..|..+..+. ..-.++++.|.+.+.++..    ....+++|+.+++++|.     +.+. ...+..+++|+.+
T Consensus       180 ~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~----~~~~l~~L~~L~l~~n~~~~~~l~~~-~~~l~~l~~L~~L  254 (562)
T 3a79_B          180 SYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNM----SVNALGHLQLSNIKLNDENCQRLMTF-LSELTRGPTLLNV  254 (562)
T ss_dssp             SCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEE----EESSEEEEEEEEEECCSTTHHHHHHH-HHHHHSCSSCEEE
T ss_pred             cccccccCcccccccCcceEEEEecCccchhhhhhh----cccccceEEEecccccccccchHHHH-HHHHhccCcceEE
Confidence            66  777777777654 1124566777666533221    11223367777777764     2221 2345566777777


Q ss_pred             EccCCcCcCCC----CCCcCCCCCCCEEEccCCcccccCCccc-----cCCCCCCeEeccCcccccccChhhhcCCCCCC
Q 046398          333 SLDDNCISGPL----PPALGDLSSLTRLDLSRNMLNGSIPLSL-----GKISHLEYLDLSNNKMNGTLSEIHFVNLTKLT  403 (794)
Q Consensus       333 ~L~~n~l~~~~----p~~l~~l~~L~~L~Ls~n~l~~~~p~~l-----~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~  403 (794)
                      +++++.+.+..    +..+ ..++|++|++++|.+++.+|..+     ..++.|+.++++.|.+  .+|...+..+    
T Consensus       255 ~L~~~~l~~~~~~~~~~~~-~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~----  327 (562)
T 3a79_B          255 TLQHIETTWKCSVKLFQFF-WPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSV----  327 (562)
T ss_dssp             EEEEEEECHHHHHHHHHHH-TTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHH----
T ss_pred             EecCCcCcHHHHHHHHHhh-hcccccEEEEeccEeeccccchhhhcccccchheehhhccccee--ecChhhhhhh----
Confidence            77666554321    1111 22367777777777776666655     4445555555555544  3332222111    


Q ss_pred             EEECcCCcceeEcCCCCcCccccceEecccccCCCCCCcccCCCCCCCEEeccCCCCCCCcchhHHhccccceeccCccc
Q 046398          404 WFSASGNSLILQVNPNWVPPFQLKTLLLMSCHLGPQFPSWLHSQKNLSVLDISNARISDTIPRWFWNSIFQLSGIIPESF  483 (794)
Q Consensus       404 ~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~l~~~~p~~l  483 (794)
                                       ....+|++|++++|.+....  ....+++|++|++++|++++.               +|..+
T Consensus       328 -----------------~~~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~---------------~~~~~  373 (562)
T 3a79_B          328 -----------------FAEMNIKMLSISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDS---------------VFQGC  373 (562)
T ss_dssp             -----------------HHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTT---------------TTTTC
T ss_pred             -----------------hccCcceEEEccCCCccccc--CccCCCCceEEECCCCccccc---------------hhhhh
Confidence                             00123444444444443221  125677888888888887763               55667


Q ss_pred             CCCCCCCEEEccCCcccccCC---hhhhhcCCCCcEEEcccccccccCCc-cccCCCCCCEEEccCCcCcccCCchhhcc
Q 046398          484 KNFSNLEVLNLGDNEFVGKIP---TWMGEGFTSLLILILRSNKFDGFLPI-QLCRLTSLQILDVANNSLSGTMPGCVNNF  559 (794)
Q Consensus       484 ~~l~~L~~L~Ls~n~l~~~ip---~~~~~~l~~L~~L~L~~n~l~~~~p~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l  559 (794)
                      ..+++|++|++++|++++ ++   ..+. .+++|+.|++++|++++.+|. .+..+++|++|++++|++++.+|..+.  
T Consensus       374 ~~l~~L~~L~L~~N~l~~-~~~~~~~~~-~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--  449 (562)
T 3a79_B          374 STLKRLQTLILQRNGLKN-FFKVALMTK-NMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--  449 (562)
T ss_dssp             CSCSSCCEEECCSSCCCB-TTHHHHTTT-TCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--
T ss_pred             cccCCCCEEECCCCCcCC-cccchhhhc-CCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--
Confidence            788899999999998874 43   3333 688999999999999884554 578889999999999999876554331  


Q ss_pred             ccccccccccCCCCcccccccccccccceeeEEEEeccchhhcccccceeEEEcCCCccccccChhhhcccCCCEEeccc
Q 046398          560 SAMATIDSSHQSNAMSYFEVTAYDCEVLEDASIVMKGSMVEYNSILNLVRIIDVSKNNFSGEIPMELTYLRGLQSLNLSH  639 (794)
Q Consensus       560 ~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~  639 (794)
                                                                    +.|+.||+++|+++ .+|..+..+++|++|+|++
T Consensus       450 ----------------------------------------------~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~  482 (562)
T 3a79_B          450 ----------------------------------------------PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVAS  482 (562)
T ss_dssp             ----------------------------------------------TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCS
T ss_pred             ----------------------------------------------CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCC
Confidence                                                          23589999999998 7888888999999999999


Q ss_pred             ccccccCCcc-ccccCCCCEEeCCCCcCcccCc
Q 046398          640 NIFTGQIPEN-IGNLISIESLDFSTNQLSSKIS  671 (794)
Q Consensus       640 N~l~~~ip~~-l~~l~~L~~L~Ls~N~l~~~~p  671 (794)
                      |+++ .+|.. +..+++|+.|++++|++.+..|
T Consensus       483 N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~c~  514 (562)
T 3a79_B          483 NQLK-SVPDGVFDRLTSLQYIWLHDNPWDCTCP  514 (562)
T ss_dssp             SCCC-CCCTTSTTTCTTCCCEECCSCCBCCCHH
T ss_pred             CCCC-CCCHHHHhcCCCCCEEEecCCCcCCCcc
Confidence            9999 67766 9999999999999999998665

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=1.7e-40  Score=367.48  Aligned_cols=407  Identities=24%  Similarity=0.289  Sum_probs=206.0

Q ss_pred             ccccCCCCCCEEeCCCCCCCCCCCCcccCCCCCCCEEEcCCCCCCCCCcccccCCccccccccCcccccccccccccccc
Q 046398          111 PSLVDLKHLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRCLDLSWSEYALQVHSFSWLSG  190 (794)
Q Consensus       111 ~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~~~  190 (794)
                      |.-.+.++|++|++++|.+.  .+|+.++++++|++|++++|.+.|.+|..++++++|+.++++.|..            
T Consensus         5 p~~~~~~~L~~L~l~~n~l~--~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~------------   70 (454)
T 1jl5_A            5 PRNVSNTFLQEPLRHSSNLT--EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLD------------   70 (454)
T ss_dssp             -------------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHH------------
T ss_pred             ccccccccchhhhcccCchh--hCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhc------------
Confidence            44445689999999999994  5899999999999999999999999999999999999988876642            


Q ss_pred             CCCCccCCCCCCCEEECcCCCCCCCCCccccCCCCCCeEeeeccCCCCCCCccccCCCCCCcEEEccCCCCCCCCCchhh
Q 046398          191 QIPNRLGNLTSLRHLDLSANKFNSTTAGWLSKFNHLEFLSLSSNGLQGTISSIGLENLTSIKTIDLSLNFELGGPIPTSF  270 (794)
Q Consensus       191 ~lp~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~~~~~~~~~~~~l  270 (794)
                               .++++|++++|.+++...    -.++|++|++++|.+++ +|.    .+++|++|+++ ++.+.+ ++.  
T Consensus        71 ---------~~l~~L~l~~~~l~~lp~----~~~~L~~L~l~~n~l~~-lp~----~~~~L~~L~l~-~n~l~~-l~~--  128 (454)
T 1jl5_A           71 ---------RQAHELELNNLGLSSLPE----LPPHLESLVASCNSLTE-LPE----LPQSLKSLLVD-NNNLKA-LSD--  128 (454)
T ss_dssp             ---------HTCSEEECTTSCCSCCCS----CCTTCSEEECCSSCCSS-CCC----CCTTCCEEECC-SSCCSC-CCS--
T ss_pred             ---------cCCCEEEecCCccccCCC----CcCCCCEEEccCCcCCc-ccc----ccCCCcEEECC-CCccCc-ccC--
Confidence                     468899999999887543    13688888888888875 553    13556666665 333332 110  


Q ss_pred             hccCCCCEEEccCCCCCcchHHHHHhhhhcCcCCccEEEeecccccccccccccCCCCCCEEEccCCcCcCCCCCCcCCC
Q 046398          271 VRLCELTSIDVSDVKLSQDLSQVLDILSACGASALESLVFSSSQISGHLTSQLGQFKSLRTLSLDDNCISGPLPPALGDL  350 (794)
Q Consensus       271 ~~l~~L~~L~l~~~~l~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l  350 (794)
                        .                            .++|++|++++|++++ +| .++.+++|++|++++|++++ +|..+   
T Consensus       129 --~----------------------------~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~~---  172 (454)
T 1jl5_A          129 --L----------------------------PPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDLP---  172 (454)
T ss_dssp             --C----------------------------CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCCC---
T ss_pred             --C----------------------------CCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCCc---
Confidence              0                            0156666666666665 44 46667777777777777764 44332   


Q ss_pred             CCCCEEEccCCcccccCCccccCCCCCCeEeccCcccccccChhhhcCCCCCCEEECcCCcceeEcCCCCcCccccceEe
Q 046398          351 SSLTRLDLSRNMLNGSIPLSLGKISHLEYLDLSNNKMNGTLSEIHFVNLTKLTWFSASGNSLILQVNPNWVPPFQLKTLL  430 (794)
Q Consensus       351 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~  430 (794)
                      ++|++|++++|.+++ +| .++.+++|++|++++|++++ +|.    ..++|+.|++++|.+. .++ .+..+++|++|+
T Consensus       173 ~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~----~~~~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~  243 (454)
T 1jl5_A          173 PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPD----LPLSLESIVAGNNILE-ELP-ELQNLPFLTTIY  243 (454)
T ss_dssp             TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCC----CCTTCCEEECCSSCCS-SCC-CCTTCTTCCEEE
T ss_pred             ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCC----CcCcccEEECcCCcCC-ccc-ccCCCCCCCEEE
Confidence            467777777777764 44 46667777777777777663 332    1235566666666554 222 244445555555


Q ss_pred             cccccCCCCCCcccCCCCCCCEEeccCCCCCCCcchhHHhccccceeccCcccCCCCCCCEEEccCCcccccCChhhhhc
Q 046398          431 LMSCHLGPQFPSWLHSQKNLSVLDISNARISDTIPRWFWNSIFQLSGIIPESFKNFSNLEVLNLGDNEFVGKIPTWMGEG  510 (794)
Q Consensus       431 L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~  510 (794)
                      +++|.+.+ +|..   +++|+.|++++|++++                +|..   +++|++|++++|++++ +|.    .
T Consensus       244 l~~N~l~~-l~~~---~~~L~~L~l~~N~l~~----------------l~~~---~~~L~~L~ls~N~l~~-l~~----~  295 (454)
T 1jl5_A          244 ADNNLLKT-LPDL---PPSLEALNVRDNYLTD----------------LPEL---PQSLTFLDVSENIFSG-LSE----L  295 (454)
T ss_dssp             CCSSCCSS-CCSC---CTTCCEEECCSSCCSC----------------CCCC---CTTCCEEECCSSCCSE-ESC----C
T ss_pred             CCCCcCCc-cccc---ccccCEEECCCCcccc----------------cCcc---cCcCCEEECcCCccCc-ccC----c
Confidence            55555543 2221   2456666666665554                2221   2456666666666553 221    1


Q ss_pred             CCCCcEEEcccccccccCCccccCC-CCCCEEEccCCcCcccCCchhhccccccccccccCCCCccccccccccccccee
Q 046398          511 FTSLLILILRSNKFDGFLPIQLCRL-TSLQILDVANNSLSGTMPGCVNNFSAMATIDSSHQSNAMSYFEVTAYDCEVLED  589 (794)
Q Consensus       511 l~~L~~L~L~~n~l~~~~p~~~~~l-~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~  589 (794)
                      .++|+.|++++|++++. +    .+ ++|++|++++|++++ +|..                                  
T Consensus       296 ~~~L~~L~l~~N~l~~i-~----~~~~~L~~L~Ls~N~l~~-lp~~----------------------------------  335 (454)
T 1jl5_A          296 PPNLYYLNASSNEIRSL-C----DLPPSLEELNVSNNKLIE-LPAL----------------------------------  335 (454)
T ss_dssp             CTTCCEEECCSSCCSEE-C----CCCTTCCEEECCSSCCSC-CCCC----------------------------------
T ss_pred             CCcCCEEECcCCcCCcc-c----CCcCcCCEEECCCCcccc-cccc----------------------------------
Confidence            24566666666665531 1    12 356666666666553 3321                                  


Q ss_pred             eEEEEeccchhhcccccceeEEEcCCCccccccChhhhcccCCCEEecccccccc--cCCccccccCCCCEEeCCCCcCc
Q 046398          590 ASIVMKGSMVEYNSILNLVRIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTG--QIPENIGNLISIESLDFSTNQLS  667 (794)
Q Consensus       590 ~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~--~ip~~l~~l~~L~~L~Ls~N~l~  667 (794)
                                     ++.|+.|++++|+++ .+|.   .+++|++|++++|++++  .+|.+++++        +.|.+.
T Consensus       336 ---------------~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L--------~~n~~~  388 (454)
T 1jl5_A          336 ---------------PPRLERLIASFNHLA-EVPE---LPQNLKQLHVEYNPLREFPDIPESVEDL--------RMNSHL  388 (454)
T ss_dssp             ---------------CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSSCCCCCTTCCEE--------ECCC--
T ss_pred             ---------------CCcCCEEECCCCccc-cccc---hhhhccEEECCCCCCCcCCCChHHHHhh--------hhcccc
Confidence                           122356666666665 3444   35566666666666665  455544432        234555


Q ss_pred             ccCcccccCCCCCCEEeCcCCcccc--cCCC
Q 046398          668 SKISQSMSSLSFLNHLNVSNNLLTG--KIPS  696 (794)
Q Consensus       668 ~~~p~~l~~l~~L~~L~ls~N~l~g--~iP~  696 (794)
                      +.+|..   +++|++|++++|+++|  .||.
T Consensus       389 ~~i~~~---~~~L~~L~ls~N~l~~~~~iP~  416 (454)
T 1jl5_A          389 AEVPEL---PQNLKQLHVETNPLREFPDIPE  416 (454)
T ss_dssp             -------------------------------
T ss_pred             cccccc---cCcCCEEECCCCcCCccccchh
Confidence            555542   3778889999999887  7775

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=100.00  E-value=1.2e-40  Score=351.35  Aligned_cols=293  Identities=31%  Similarity=0.527  Sum_probs=203.9

Q ss_pred             CCCHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcc--eeeeEecCCC--CcEEEEEcCCCCCccccccchhhhhcccccc
Q 046398           30 GCTDSEREALLKLKQDLKDPSNRLGSWVVDGDCCK--WAEVVCSNLT--GHVLQLSLRNPFRNDLRYATTEYEDYMRSML  105 (794)
Q Consensus        30 ~~~~~~~~~ll~~k~~~~~~~~~~~~W~~~~~~c~--w~gv~c~~~~--~~v~~L~l~~~~~~~~~~~~~~~~~~~~~~l  105 (794)
                      .|.++|++||++||+++.+|. .+++|..+.+||.  |.||+|+..+  ++|++|++++.                  .+
T Consensus         2 ~c~~~~~~aL~~~k~~~~~~~-~l~~W~~~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~------------------~l   62 (313)
T 1ogq_A            2 LCNPQDKQALLQIKKDLGNPT-TLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGL------------------NL   62 (313)
T ss_dssp             CSCHHHHHHHHHHHHHTTCCG-GGTTCCTTSCTTTTCSTTEEECCSSSCCCEEEEEEECC------------------CC
T ss_pred             CCCHHHHHHHHHHHHhcCCcc-cccCCCCCCCCCcCCCcceEeCCCCCCceEEEEECCCC------------------Cc
Confidence            599999999999999998876 7899987789998  9999998654  89999999984                  78


Q ss_pred             ce--eecccccCCCCCCEEeCCC-CCCCCCCCCcccCCCCCCCEEEcCCCCCCCCCcccccCCccccccccCcccccccc
Q 046398          106 SG--NVNPSLVDLKHLTHLDLSG-NDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRCLDLSWSEYALQV  182 (794)
Q Consensus       106 ~g--~~~~~l~~l~~L~~L~Ls~-n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~~~~~~~~  182 (794)
                      .|  .+|+.+.++++|++|+|++ |.+.+. +|..++.+++|++|+|++|.+++.+|..++++++|++|++++|.     
T Consensus        63 ~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~-~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~-----  136 (313)
T 1ogq_A           63 PKPYPIPSSLANLPYLNFLYIGGINNLVGP-IPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNA-----  136 (313)
T ss_dssp             SSCEECCGGGGGCTTCSEEEEEEETTEESC-CCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSE-----
T ss_pred             cCCcccChhHhCCCCCCeeeCCCCCccccc-CChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCc-----
Confidence            88  8899999999999999995 888875 89999999999999999999998899999999999999998877     


Q ss_pred             ccccccccCCCCccCCCCCCCEEECcCCCCCCCCCccccCCC-CCCeEeeeccCCCCCCCccccCCCCCCcEEEccCCCC
Q 046398          183 HSFSWLSGQIPNRLGNLTSLRHLDLSANKFNSTTAGWLSKFN-HLEFLSLSSNGLQGTISSIGLENLTSIKTIDLSLNFE  261 (794)
Q Consensus       183 ~~~~~~~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~-~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~~~~  261 (794)
                           +.+.+|..+.++++|++|++++|++++..|..+..++ +|++|++++|.+++.+|. .+..++ |++|+++ ++.
T Consensus       137 -----l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~-~~~~l~-L~~L~Ls-~N~  208 (313)
T 1ogq_A          137 -----LSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPP-TFANLN-LAFVDLS-RNM  208 (313)
T ss_dssp             -----EESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCG-GGGGCC-CSEEECC-SSE
T ss_pred             -----cCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCCh-HHhCCc-ccEEECc-CCc
Confidence                 4467788888888888888888888888888787777 788888877777655554 333333 4444443 222


Q ss_pred             CCCCCchhhhccCCCCEEEccCCCCCcchHHHHHhhhhcCcCCccEEEeecccccccccccccCCCCCCEEEccCCcCcC
Q 046398          262 LGGPIPTSFVRLCELTSIDVSDVKLSQDLSQVLDILSACGASALESLVFSSSQISGHLTSQLGQFKSLRTLSLDDNCISG  341 (794)
Q Consensus       262 ~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~  341 (794)
                      +.+..|..+..++                             +|++|++++|.+++.++. +..+++|++|++++|.+++
T Consensus       209 l~~~~~~~~~~l~-----------------------------~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~  258 (313)
T 1ogq_A          209 LEGDASVLFGSDK-----------------------------NTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYG  258 (313)
T ss_dssp             EEECCGGGCCTTS-----------------------------CCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEE
T ss_pred             ccCcCCHHHhcCC-----------------------------CCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccC
Confidence            3322332222222                             333333333333332222 3344455555555555544


Q ss_pred             CCCCCcCCCCCCCEEEccCCcccccCCccccCCCCCCeEeccCcc
Q 046398          342 PLPPALGDLSSLTRLDLSRNMLNGSIPLSLGKISHLEYLDLSNNK  386 (794)
Q Consensus       342 ~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~  386 (794)
                      .+|.++..+++|++|++++|++++.+|.. ..+++|+.+++++|+
T Consensus       259 ~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~  302 (313)
T 1ogq_A          259 TLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNK  302 (313)
T ss_dssp             CCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSS
T ss_pred             cCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCC
Confidence            44444444555555555555555444433 444445555554444

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=1.1e-38  Score=356.12  Aligned_cols=381  Identities=18%  Similarity=0.175  Sum_probs=238.9

Q ss_pred             CCCCEEECcCCCCCCCCCccccCCCCCCeEeeeccCCCCCCCccccCCCCCCcEEEccCCCCCCCCCchhhhccCCCCEE
Q 046398          200 TSLRHLDLSANKFNSTTAGWLSKFNHLEFLSLSSNGLQGTISSIGLENLTSIKTIDLSLNFELGGPIPTSFVRLCELTSI  279 (794)
Q Consensus       200 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L  279 (794)
                      ++|++|++++|.+++..|..+.++++|++|++++|.+.+.++...+.++++|++|+++ ++.+.+..|..+.++++|+.|
T Consensus        30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls-~n~l~~~~~~~~~~l~~L~~L  108 (455)
T 3v47_A           30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLD-YNQFLQLETGAFNGLANLEVL  108 (455)
T ss_dssp             TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECT-TCTTCEECTTTTTTCTTCCEE
T ss_pred             CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCC-CCccCccChhhccCcccCCEE
Confidence            5677777777777777777777777777777777777666655567777777777777 556666667777777777777


Q ss_pred             EccCCCCCcchHHHHHhhhhcCcCCccEEEeecccccccccccccCCCCCCEEEccCCcCcCCCCCC-cCCCCCCCEEEc
Q 046398          280 DVSDVKLSQDLSQVLDILSACGASALESLVFSSSQISGHLTSQLGQFKSLRTLSLDDNCISGPLPPA-LGDLSSLTRLDL  358 (794)
Q Consensus       280 ~l~~~~l~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L  358 (794)
                      ++++|.+++..+..                           ..+..+++|++|++++|.+++..|.. +.++++|++|++
T Consensus       109 ~L~~n~l~~~~~~~---------------------------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L  161 (455)
T 3v47_A          109 TLTQCNLDGAVLSG---------------------------NFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDL  161 (455)
T ss_dssp             ECTTSCCBTHHHHS---------------------------STTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEEC
T ss_pred             eCCCCCCCccccCc---------------------------ccccCcccCCEEECCCCccCccCcccccCCCCcccEEeC
Confidence            77777666543322                           11334444455555555444443433 444455555555


Q ss_pred             cCCcccccCCccccCC--CCCCeEeccCcccccccChhhhcCCCCCCEEECcCCcceeEcCCCCcCccccceEecccccC
Q 046398          359 SRNMLNGSIPLSLGKI--SHLEYLDLSNNKMNGTLSEIHFVNLTKLTWFSASGNSLILQVNPNWVPPFQLKTLLLMSCHL  436 (794)
Q Consensus       359 s~n~l~~~~p~~l~~l--~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l  436 (794)
                      ++|.+++..+..+..+  .+|+.|++++|.+.+..+. .+..                .....+...++|++|++++|.+
T Consensus       162 ~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~-~~~~----------------~~~~~~~~~~~L~~L~Ls~n~l  224 (455)
T 3v47_A          162 TFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEY-WLGW----------------EKCGNPFKNTSITTLDLSGNGF  224 (455)
T ss_dssp             TTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTT-CTTH----------------HHHCCTTTTCEEEEEECTTSCC
T ss_pred             CCCcccccChhhhhccccccccccccccCcccccchh-hccc----------------cccccccccceeeeEecCCCcc
Confidence            5555544444444333  3455555555554421111 0000                0000000111222222222222


Q ss_pred             CCCCCcccC---CCCCCCEEeccCCCCCCCcchhHHhccccceeccCcccCCCCCCCEEEccCCcccccCChhhh-hcCC
Q 046398          437 GPQFPSWLH---SQKNLSVLDISNARISDTIPRWFWNSIFQLSGIIPESFKNFSNLEVLNLGDNEFVGKIPTWMG-EGFT  512 (794)
Q Consensus       437 ~~~~~~~l~---~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~-~~l~  512 (794)
                      .+..|..+.   ..++|+.|++++|.+.+..                             +..+.+.+..+..+. ...+
T Consensus       225 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~  275 (455)
T 3v47_A          225 KESMAKRFFDAIAGTKIQSLILSNSYNMGSS-----------------------------FGHTNFKDPDNFTFKGLEAS  275 (455)
T ss_dssp             CHHHHHHHHHHTTTCCEEEEECTTCTTTSCC-----------------------------TTCCSSCCCCTTTTGGGTTS
T ss_pred             cccchhhhhccccccceeeEeeccccccccc-----------------------------cchhhhccCccccccccccc
Confidence            222221111   1134444444444433210                             000111111111110 0246


Q ss_pred             CCcEEEcccccccccCCccccCCCCCCEEEccCCcCcccCCchhhccccccccccccCCCCcccccccccccccceeeEE
Q 046398          513 SLLILILRSNKFDGFLPIQLCRLTSLQILDVANNSLSGTMPGCVNNFSAMATIDSSHQSNAMSYFEVTAYDCEVLEDASI  592 (794)
Q Consensus       513 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~  592 (794)
                      +|+.|++++|++.+..|..+..+++|++|++++|++++..|..+.++++|                              
T Consensus       276 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L------------------------------  325 (455)
T 3v47_A          276 GVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHL------------------------------  325 (455)
T ss_dssp             CCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTC------------------------------
T ss_pred             CceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccC------------------------------
Confidence            78888888888888888888889999999999999988777777665554                              


Q ss_pred             EEeccchhhcccccceeEEEcCCCccccccChhhhcccCCCEEecccccccccCCccccccCCCCEEeCCCCcCcccCcc
Q 046398          593 VMKGSMVEYNSILNLVRIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQIPENIGNLISIESLDFSTNQLSSKISQ  672 (794)
Q Consensus       593 ~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~  672 (794)
                                      +.|++++|++++..|..++.+++|++|+|++|++++..|..+.++++|++|+|++|++++..+.
T Consensus       326 ----------------~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~  389 (455)
T 3v47_A          326 ----------------LKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDG  389 (455)
T ss_dssp             ----------------CEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred             ----------------CEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHh
Confidence                            8889999999888888999999999999999999988899999999999999999999998888


Q ss_pred             cccCCCCCCEEeCcCCcccccCCCCCcc
Q 046398          673 SMSSLSFLNHLNVSNNLLTGKIPSSTQL  700 (794)
Q Consensus       673 ~l~~l~~L~~L~ls~N~l~g~iP~~~~~  700 (794)
                      .+..+++|++|++++|++++.+|....+
T Consensus       390 ~~~~l~~L~~L~l~~N~l~~~~~~~~~l  417 (455)
T 3v47_A          390 IFDRLTSLQKIWLHTNPWDCSCPRIDYL  417 (455)
T ss_dssp             TTTTCTTCCEEECCSSCBCCCTTTTHHH
T ss_pred             HhccCCcccEEEccCCCcccCCCcchHH
Confidence            8899999999999999999999975444

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=3.1e-39  Score=357.31  Aligned_cols=404  Identities=22%  Similarity=0.279  Sum_probs=265.6

Q ss_pred             CcccCCCCCCCEEEcCCCCCCCCCcccccCCccccccccCccccccccccccccccCCCCccCCCCCCCEEECcCCCCCC
Q 046398          135 PKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRCLDLSWSEYALQVHSFSWLSGQIPNRLGNLTSLRHLDLSANKFNS  214 (794)
Q Consensus       135 p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~~~~lp~~l~~l~~L~~L~Ls~n~l~~  214 (794)
                      |+.+ +.++|++|++++|.+ +.+|++++++++|++|++++|.          +.|.+|..++++++|+.+++..|..  
T Consensus         5 p~~~-~~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~----------~~~~~p~~~~~l~~L~~l~l~~c~~--   70 (454)
T 1jl5_A            5 PRNV-SNTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSE----------WERNAPPGNGEQREMAVSRLRDCLD--   70 (454)
T ss_dssp             -------------------------------CCHHHHHHHHHH----------HHHTSCTTSCCCHHHHHHHHHHHHH--
T ss_pred             cccc-ccccchhhhcccCch-hhCChhHhcccchhhhhccCCc----------ccccCCcccccchhcchhhhhhhhc--
Confidence            3444 468999999999999 7999999999999999999877          5578899999999888888876642  


Q ss_pred             CCCccccCCCCCCeEeeeccCCCCCCCccccCCCCCCcEEEccCCCCCCCCCchhhhccCCCCEEEccCCCCCcchHHHH
Q 046398          215 TTAGWLSKFNHLEFLSLSSNGLQGTISSIGLENLTSIKTIDLSLNFELGGPIPTSFVRLCELTSIDVSDVKLSQDLSQVL  294 (794)
Q Consensus       215 ~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~l  294 (794)
                               .++++|++++|.+++ +|.    -.++|++|+++ ++.+++ +|..                         
T Consensus        71 ---------~~l~~L~l~~~~l~~-lp~----~~~~L~~L~l~-~n~l~~-lp~~-------------------------  109 (454)
T 1jl5_A           71 ---------RQAHELELNNLGLSS-LPE----LPPHLESLVAS-CNSLTE-LPEL-------------------------  109 (454)
T ss_dssp             ---------HTCSEEECTTSCCSC-CCS----CCTTCSEEECC-SSCCSS-CCCC-------------------------
T ss_pred             ---------cCCCEEEecCCcccc-CCC----CcCCCCEEEcc-CCcCCc-cccc-------------------------
Confidence                     568889999888874 332    12455555555 333333 2211                         


Q ss_pred             HhhhhcCcCCccEEEeecccccccccccccCCCCCCEEEccCCcCcCCCCCCcCCCCCCCEEEccCCcccccCCccccCC
Q 046398          295 DILSACGASALESLVFSSSQISGHLTSQLGQFKSLRTLSLDDNCISGPLPPALGDLSSLTRLDLSRNMLNGSIPLSLGKI  374 (794)
Q Consensus       295 ~~l~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l  374 (794)
                             .++|++|++++|++++. +..   .++|++|++++|.+++ +| .++++++|++|++++|++++ +|..+   
T Consensus       110 -------~~~L~~L~l~~n~l~~l-~~~---~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~~---  172 (454)
T 1jl5_A          110 -------PQSLKSLLVDNNNLKAL-SDL---PPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDLP---  172 (454)
T ss_dssp             -------CTTCCEEECCSSCCSCC-CSC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCCC---
T ss_pred             -------cCCCcEEECCCCccCcc-cCC---CCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCCc---
Confidence                   12777888888877753 221   2689999999999996 67 59999999999999999985 66543   


Q ss_pred             CCCCeEeccCcccccccChhhhcCCCCCCEEECcCCcceeEcCCCCcCccccceEecccccCCCCCCcccCCCCCCCEEe
Q 046398          375 SHLEYLDLSNNKMNGTLSEIHFVNLTKLTWFSASGNSLILQVNPNWVPPFQLKTLLLMSCHLGPQFPSWLHSQKNLSVLD  454 (794)
Q Consensus       375 ~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~  454 (794)
                      ++|++|++++|++++ ++  .+.++++|+.|++++|.+.+. +.   .+.+|++|++++|.+. .+|. +..+++|++|+
T Consensus       173 ~~L~~L~L~~n~l~~-l~--~~~~l~~L~~L~l~~N~l~~l-~~---~~~~L~~L~l~~n~l~-~lp~-~~~l~~L~~L~  243 (454)
T 1jl5_A          173 PSLEFIAAGNNQLEE-LP--ELQNLPFLTAIYADNNSLKKL-PD---LPLSLESIVAGNNILE-ELPE-LQNLPFLTTIY  243 (454)
T ss_dssp             TTCCEEECCSSCCSS-CC--CCTTCTTCCEEECCSSCCSSC-CC---CCTTCCEEECCSSCCS-SCCC-CTTCTTCCEEE
T ss_pred             ccccEEECcCCcCCc-Cc--cccCCCCCCEEECCCCcCCcC-CC---CcCcccEEECcCCcCC-cccc-cCCCCCCCEEE
Confidence            589999999999985 66  488999999999999998752 22   1258999999999887 5664 88899999999


Q ss_pred             ccCCCCCCCcchhHHhccccceeccCcccCCCCCCCEEEccCCcccccCChhhhhcCCCCcEEEcccccccccCCccccC
Q 046398          455 ISNARISDTIPRWFWNSIFQLSGIIPESFKNFSNLEVLNLGDNEFVGKIPTWMGEGFTSLLILILRSNKFDGFLPIQLCR  534 (794)
Q Consensus       455 Ls~n~l~~~~p~~~~~~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~  534 (794)
                      +++|++++                +|.   .+++|++|++++|+++ .+|..    +++|+.|++++|++++. |.   .
T Consensus       244 l~~N~l~~----------------l~~---~~~~L~~L~l~~N~l~-~l~~~----~~~L~~L~ls~N~l~~l-~~---~  295 (454)
T 1jl5_A          244 ADNNLLKT----------------LPD---LPPSLEALNVRDNYLT-DLPEL----PQSLTFLDVSENIFSGL-SE---L  295 (454)
T ss_dssp             CCSSCCSS----------------CCS---CCTTCCEEECCSSCCS-CCCCC----CTTCCEEECCSSCCSEE-SC---C
T ss_pred             CCCCcCCc----------------ccc---cccccCEEECCCCccc-ccCcc----cCcCCEEECcCCccCcc-cC---c
Confidence            99998875                333   2378999999999988 46652    47899999999998863 21   1


Q ss_pred             CCCCCEEEccCCcCcccCCchhhccccccccccccCCCCcccccccccccccceeeEEEEeccchhhcccccceeEEEcC
Q 046398          535 LTSLQILDVANNSLSGTMPGCVNNFSAMATIDSSHQSNAMSYFEVTAYDCEVLEDASIVMKGSMVEYNSILNLVRIIDVS  614 (794)
Q Consensus       535 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~LdLs  614 (794)
                      .++|++|++++|++++. +.    +                                             .+.|+.|+++
T Consensus       296 ~~~L~~L~l~~N~l~~i-~~----~---------------------------------------------~~~L~~L~Ls  325 (454)
T 1jl5_A          296 PPNLYYLNASSNEIRSL-CD----L---------------------------------------------PPSLEELNVS  325 (454)
T ss_dssp             CTTCCEEECCSSCCSEE-CC----C---------------------------------------------CTTCCEEECC
T ss_pred             CCcCCEEECcCCcCCcc-cC----C---------------------------------------------cCcCCEEECC
Confidence            26889999999988741 11    0                                             1245899999


Q ss_pred             CCccccccChhhhcccCCCEEecccccccccCCccccccCCCCEEeCCCCcCcc--cCcccccCCCCCCEEeCcCCcccc
Q 046398          615 KNNFSGEIPMELTYLRGLQSLNLSHNIFTGQIPENIGNLISIESLDFSTNQLSS--KISQSMSSLSFLNHLNVSNNLLTG  692 (794)
Q Consensus       615 ~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~--~~p~~l~~l~~L~~L~ls~N~l~g  692 (794)
                      +|++++ +|..   +++|++|++++|+++ .+|.   .+++|+.|++++|++++  .+|..+..        ++.|.+.|
T Consensus       326 ~N~l~~-lp~~---~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~--------L~~n~~~~  389 (454)
T 1jl5_A          326 NNKLIE-LPAL---PPRLERLIASFNHLA-EVPE---LPQNLKQLHVEYNPLREFPDIPESVED--------LRMNSHLA  389 (454)
T ss_dssp             SSCCSC-CCCC---CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSSCCCCCTTCCE--------EECCC---
T ss_pred             CCcccc-cccc---CCcCCEEECCCCccc-cccc---hhhhccEEECCCCCCCcCCCChHHHHh--------hhhccccc
Confidence            999986 6654   588999999999999 6777   47899999999999998  67766543        35688889


Q ss_pred             cCCCCCccCccCcccccCCCcCC
Q 046398          693 KIPSSTQLQSFDASCFVGNNLCG  715 (794)
Q Consensus       693 ~iP~~~~~~~~~~~~~~gn~lcg  715 (794)
                      .+|..  +..+....+.+|.+.|
T Consensus       390 ~i~~~--~~~L~~L~ls~N~l~~  410 (454)
T 1jl5_A          390 EVPEL--PQNLKQLHVETNPLRE  410 (454)
T ss_dssp             -----------------------
T ss_pred             ccccc--cCcCCEEECCCCcCCc
Confidence            99874  4566667788887766

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=3.9e-37  Score=343.55  Aligned_cols=358  Identities=19%  Similarity=0.199  Sum_probs=203.3

Q ss_pred             cccceeecccccCCCCCCEEeCCCCCCCCCCCCcccCCCCCCCEEEcCCCCCCCCCcccccCCccccccccCcccccccc
Q 046398          103 SMLSGNVNPSLVDLKHLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRCLDLSWSEYALQV  182 (794)
Q Consensus       103 ~~l~g~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~~~~~~~~  182 (794)
                      +.+.+..+..+.++++|++|+|++|.+.+.-.+..|..+++|++|+|++|++++..|..|+++++|++|++++|.+.   
T Consensus        40 n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~---  116 (455)
T 3v47_A           40 NSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLD---  116 (455)
T ss_dssp             SCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCB---
T ss_pred             CccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCC---
Confidence            35565556666666777777777666654212445666667777777776666666666666667777777666532   


Q ss_pred             ccccccccCCCCc--cCCCCCCCEEECcCCCCCCCCCcc-ccCCCCCCeEeeeccCCCCCCCccccCCC--CCCcEEEcc
Q 046398          183 HSFSWLSGQIPNR--LGNLTSLRHLDLSANKFNSTTAGW-LSKFNHLEFLSLSSNGLQGTISSIGLENL--TSIKTIDLS  257 (794)
Q Consensus       183 ~~~~~~~~~lp~~--l~~l~~L~~L~Ls~n~l~~~~~~~-l~~l~~L~~L~L~~n~l~~~i~~~~l~~l--~~L~~L~L~  257 (794)
                             +.+|..  +.++++|++|++++|.+++..|.. +.++++|++|++++|.+++..+. .+..+  ++|+.|+++
T Consensus       117 -------~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~l~~l~~~~L~~L~l~  188 (455)
T 3v47_A          117 -------GAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEE-DLLNFQGKHFTLLRLS  188 (455)
T ss_dssp             -------THHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTT-TSGGGTTCEEEEEECT
T ss_pred             -------ccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChh-hhhccccccccccccc
Confidence                   222322  666666777777766666665554 56666667777666666654444 44443  566666666


Q ss_pred             CCCCCCCCCchh--------hhccCCCCEEEccCCCCCcchHHHHHhhhhcCcCCccEEEeecccccccccccccCCCCC
Q 046398          258 LNFELGGPIPTS--------FVRLCELTSIDVSDVKLSQDLSQVLDILSACGASALESLVFSSSQISGHLTSQLGQFKSL  329 (794)
Q Consensus       258 ~~~~~~~~~~~~--------l~~l~~L~~L~l~~~~l~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L  329 (794)
                       ++.+.+..+..        +..+++|+.|++++|.+.+..+..+....  ..++|+.|++++|...+....        
T Consensus       189 -~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~--------  257 (455)
T 3v47_A          189 -SITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAI--AGTKIQSLILSNSYNMGSSFG--------  257 (455)
T ss_dssp             -TCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHT--TTCCEEEEECTTCTTTSCCTT--------
T ss_pred             -cCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccc--cccceeeEeeccccccccccc--------
Confidence             44444333222        22445666666666666666655554431  112566666666544332110        


Q ss_pred             CEEEccCCcCcCCCCCCcC--CCCCCCEEEccCCcccccCCccccCCCCCCeEeccCcccccccChhhhcCCCCCCEEEC
Q 046398          330 RTLSLDDNCISGPLPPALG--DLSSLTRLDLSRNMLNGSIPLSLGKISHLEYLDLSNNKMNGTLSEIHFVNLTKLTWFSA  407 (794)
Q Consensus       330 ~~L~L~~n~l~~~~p~~l~--~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~l  407 (794)
                            .+.+.+..+..+.  ..++|++|++++|.+++..|..++.+++|++|++++|++.+..+. .+..+++|+.|++
T Consensus       258 ------~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~L  330 (455)
T 3v47_A          258 ------HTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDN-AFWGLTHLLKLNL  330 (455)
T ss_dssp             ------CCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTT-TTTTCTTCCEEEC
T ss_pred             ------hhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChh-HhcCcccCCEEEC
Confidence                  0001111111111  123555555555555555555555555555555555555533222 4555555555555


Q ss_pred             cCCcceeEcCCCCcCccccceEecccccCCCCCCcccCCCCCCCEEeccCCCCCCCcchhHHhccccceeccCcccCCCC
Q 046398          408 SGNSLILQVNPNWVPPFQLKTLLLMSCHLGPQFPSWLHSQKNLSVLDISNARISDTIPRWFWNSIFQLSGIIPESFKNFS  487 (794)
Q Consensus       408 s~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~l~~~~p~~l~~l~  487 (794)
                      ++|.+.+..+..+..+++|++|++++|.+++..|..+..+++|++|++++|++++.               .+..+..++
T Consensus       331 s~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~---------------~~~~~~~l~  395 (455)
T 3v47_A          331 SQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSV---------------PDGIFDRLT  395 (455)
T ss_dssp             CSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCC---------------CTTTTTTCT
T ss_pred             CCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccC---------------CHhHhccCC
Confidence            55555555445555555666666666666656666677777777778877777652               234456777


Q ss_pred             CCCEEEccCCcccccCC
Q 046398          488 NLEVLNLGDNEFVGKIP  504 (794)
Q Consensus       488 ~L~~L~Ls~n~l~~~ip  504 (794)
                      +|++|++++|++++..|
T Consensus       396 ~L~~L~l~~N~l~~~~~  412 (455)
T 3v47_A          396 SLQKIWLHTNPWDCSCP  412 (455)
T ss_dssp             TCCEEECCSSCBCCCTT
T ss_pred             cccEEEccCCCcccCCC
Confidence            88888888888877776

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=1.2e-36  Score=336.95  Aligned_cols=359  Identities=19%  Similarity=0.206  Sum_probs=281.0

Q ss_pred             cceeecccccCCCCCCEEeCCCCCCCCCCCCcccCCCCCCCEEEcCCCCCCCCCcccccCCccccccccCcccccccccc
Q 046398          105 LSGNVNPSLVDLKHLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRCLDLSWSEYALQVHS  184 (794)
Q Consensus       105 l~g~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~~~~~~~~~~  184 (794)
                      ..+..+..++++++|++|++++|.+++  +| .++.+++|++|++++|++++. |  ++.+++|++|++++|.+.     
T Consensus        30 ~~~~~~~~~~~l~~L~~L~Ls~n~l~~--~~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~-----   98 (457)
T 3bz5_A           30 MQATDTISEEQLATLTSLDCHNSSITD--MT-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLT-----   98 (457)
T ss_dssp             CCTTSEEEHHHHTTCCEEECCSSCCCC--CT-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCS-----
T ss_pred             cCcccccChhHcCCCCEEEccCCCccc--Ch-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCc-----
Confidence            344445578899999999999999995  45 689999999999999999974 4  899999999999998854     


Q ss_pred             ccccccCCCCccCCCCCCCEEECcCCCCCCCCCccccCCCCCCeEeeeccCCCCCCCccccCCCCCCcEEEccCCCCCCC
Q 046398          185 FSWLSGQIPNRLGNLTSLRHLDLSANKFNSTTAGWLSKFNHLEFLSLSSNGLQGTISSIGLENLTSIKTIDLSLNFELGG  264 (794)
Q Consensus       185 ~~~~~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~~~~~~~  264 (794)
                            .+|  ++++++|++|++++|++++. +  ++.+++|++|++++|.+++.    .++++++|++|+++ ++...+
T Consensus        99 ------~~~--~~~l~~L~~L~L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~l----~l~~l~~L~~L~l~-~n~~~~  162 (457)
T 3bz5_A           99 ------NLD--VTPLTKLTYLNCDTNKLTKL-D--VSQNPLLTYLNCARNTLTEI----DVSHNTQLTELDCH-LNKKIT  162 (457)
T ss_dssp             ------CCC--CTTCTTCCEEECCSSCCSCC-C--CTTCTTCCEEECTTSCCSCC----CCTTCTTCCEEECT-TCSCCC
T ss_pred             ------eee--cCCCCcCCEEECCCCcCCee-c--CCCCCcCCEEECCCCcccee----ccccCCcCCEEECC-CCCccc
Confidence                  344  88999999999999999885 3  89999999999999999863    47899999999999 444444


Q ss_pred             CCchhhhccCCCCEEEccCCCCCcchHHHHHhhhhcCcCCccEEEeecccccccccccccCCCCCCEEEccCCcCcCCCC
Q 046398          265 PIPTSFVRLCELTSIDVSDVKLSQDLSQVLDILSACGASALESLVFSSSQISGHLTSQLGQFKSLRTLSLDDNCISGPLP  344 (794)
Q Consensus       265 ~~~~~l~~l~~L~~L~l~~~~l~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p  344 (794)
                      .+  .+..+++|+.|++++|++++. |  +.     .+++|++|++++|.+++.   .++.+++|++|++++|++++ +|
T Consensus       163 ~~--~~~~l~~L~~L~ls~n~l~~l-~--l~-----~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip  228 (457)
T 3bz5_A          163 KL--DVTPQTQLTTLDCSFNKITEL-D--VS-----QNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID  228 (457)
T ss_dssp             CC--CCTTCTTCCEEECCSSCCCCC-C--CT-----TCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC
T ss_pred             cc--ccccCCcCCEEECCCCcccee-c--cc-----cCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC
Confidence            44  478899999999999999874 2  33     345999999999999975   37889999999999999997 55


Q ss_pred             CCcCCCCCCCEEEccCCcccccCCccccCCC-------CCCeEeccCcccccccChhhhcCCCCCCEEECcCCcceeEcC
Q 046398          345 PALGDLSSLTRLDLSRNMLNGSIPLSLGKIS-------HLEYLDLSNNKMNGTLSEIHFVNLTKLTWFSASGNSLILQVN  417 (794)
Q Consensus       345 ~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~-------~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~  417 (794)
                        +..+++|++|++++|++++..+..+..++       +|+.|++++|.+.+.+|   +..+++|+.|++++|...+.++
T Consensus       229 --~~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~---~~~l~~L~~L~Ls~n~~l~~l~  303 (457)
T 3bz5_A          229 --VTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ---AEGCRKIKELDVTHNTQLYLLD  303 (457)
T ss_dssp             --CTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE---CTTCTTCCCCCCTTCTTCCEEE
T ss_pred             --ccccCCCCEEEeeCCcCCCcCHHHCCCCCEEeccCCCCCEEECCCCccCCccc---ccccccCCEEECCCCcccceec
Confidence              78899999999999999876544333332       34445555555444443   3456667777777766555544


Q ss_pred             CCCcCccccceEecccccCCCCCCcccCCCCCCCEEeccCCCCCCCcchhHHhccccceeccCcccCCCCCCCEEEccCC
Q 046398          418 PNWVPPFQLKTLLLMSCHLGPQFPSWLHSQKNLSVLDISNARISDTIPRWFWNSIFQLSGIIPESFKNFSNLEVLNLGDN  497 (794)
Q Consensus       418 ~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~l~~~~p~~l~~l~~L~~L~Ls~n  497 (794)
                      .   ...+|+.++++             .+++|++|++++|++++                +  .+..+++|+.|++++|
T Consensus       304 ~---~~~~L~~L~l~-------------~~~~L~~L~L~~N~l~~----------------l--~l~~l~~L~~L~l~~N  349 (457)
T 3bz5_A          304 C---QAAGITELDLS-------------QNPKLVYLYLNNTELTE----------------L--DVSHNTKLKSLSCVNA  349 (457)
T ss_dssp             C---TTCCCSCCCCT-------------TCTTCCEEECTTCCCSC----------------C--CCTTCTTCSEEECCSS
T ss_pred             c---CCCcceEechh-------------hcccCCEEECCCCcccc----------------c--ccccCCcCcEEECCCC
Confidence            3   22344444443             44789999999999886                3  2778999999999999


Q ss_pred             cccccCChhhhhcCCCCcEEEcccccccccCCccccCCCCCCEEEccCCcCcccCCchhh
Q 046398          498 EFVGKIPTWMGEGFTSLLILILRSNKFDGFLPIQLCRLTSLQILDVANNSLSGTMPGCVN  557 (794)
Q Consensus       498 ~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~  557 (794)
                      ++++         ++.|..|++++|.+.|.     ..+..|+.+++++|+++|.+|..+.
T Consensus       350 ~l~~---------l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~~~~  395 (457)
T 3bz5_A          350 HIQD---------FSSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVSPDLL  395 (457)
T ss_dssp             CCCB---------CTTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCTTCB
T ss_pred             CCCC---------ccccccccccCCcEEec-----ceeeecCccccccCcEEEEcChhHh
Confidence            9984         35677778999999876     3456788899999999999997654

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=1.8e-36  Score=335.47  Aligned_cols=320  Identities=21%  Similarity=0.233  Sum_probs=234.1

Q ss_pred             CCcccCCCCCCCEEEcCCCCCCCCCcccccCCccccccccCccccccccccccccccCCCCccCCCCCCCEEECcCCCCC
Q 046398          134 IPKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRCLDLSWSEYALQVHSFSWLSGQIPNRLGNLTSLRHLDLSANKFN  213 (794)
Q Consensus       134 ~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~~~~lp~~l~~l~~L~~L~Ls~n~l~  213 (794)
                      .+..++.+++|++|++++|.+++. | .++.+++|++|++++|.+.           .+|  ++.+++|++|++++|.++
T Consensus        34 ~~~~~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~-----------~~~--~~~l~~L~~L~Ls~N~l~   98 (457)
T 3bz5_A           34 DTISEEQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNIT-----------TLD--LSQNTNLTYLACDSNKLT   98 (457)
T ss_dssp             SEEEHHHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCS-----------CCC--CTTCTTCSEEECCSSCCS
T ss_pred             cccChhHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCC-----------eEc--cccCCCCCEEECcCCCCc
Confidence            456788899999999999999964 5 6999999999999998854           344  889999999999999999


Q ss_pred             CCCCccccCCCCCCeEeeeccCCCCCCCccccCCCCCCcEEEccCCCCCCCCCchhhhccCCCCEEEccCCCCCcchHHH
Q 046398          214 STTAGWLSKFNHLEFLSLSSNGLQGTISSIGLENLTSIKTIDLSLNFELGGPIPTSFVRLCELTSIDVSDVKLSQDLSQV  293 (794)
Q Consensus       214 ~~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~  293 (794)
                      +. +  ++++++|++|++++|.+++ +   .++.+++|++|+++ ++.+++.   .+.++++|+.|++++|...+.++  
T Consensus        99 ~~-~--~~~l~~L~~L~L~~N~l~~-l---~~~~l~~L~~L~l~-~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~~--  165 (457)
T 3bz5_A           99 NL-D--VTPLTKLTYLNCDTNKLTK-L---DVSQNPLLTYLNCA-RNTLTEI---DVSHNTQLTELDCHLNKKITKLD--  165 (457)
T ss_dssp             CC-C--CTTCTTCCEEECCSSCCSC-C---CCTTCTTCCEEECT-TSCCSCC---CCTTCTTCCEEECTTCSCCCCCC--
T ss_pred             ee-e--cCCCCcCCEEECCCCcCCe-e---cCCCCCcCCEEECC-CCcccee---ccccCCcCCEEECCCCCcccccc--
Confidence            86 2  8899999999999999986 3   37899999999999 6677763   27788889999998886555442  


Q ss_pred             HHhhhhcCcCCccEEEeecccccccccccccCCCCCCEEEccCCcCcCCCCCCcCCCCCCCEEEccCCcccccCCccccC
Q 046398          294 LDILSACGASALESLVFSSSQISGHLTSQLGQFKSLRTLSLDDNCISGPLPPALGDLSSLTRLDLSRNMLNGSIPLSLGK  373 (794)
Q Consensus       294 l~~l~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~  373 (794)
                      +.     .+++|++|++++|++++. |  +..+++|+.|++++|.+++.   .++.+++|++|++++|++++ +|  ++.
T Consensus       166 ~~-----~l~~L~~L~ls~n~l~~l-~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~  231 (457)
T 3bz5_A          166 VT-----PQTQLTTLDCSFNKITEL-D--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTP  231 (457)
T ss_dssp             CT-----TCTTCCEEECCSSCCCCC-C--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTT
T ss_pred             cc-----cCCcCCEEECCCCcccee-c--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccc
Confidence            22     334888888888888873 3  67778888888888888764   36778888888888888876 55  677


Q ss_pred             CCCCCeEeccCcccccccChhhhcCCCCCCEEECcCCcceeEcCCCCcCccccceEecccccCCCCCCcccCCCCCCCEE
Q 046398          374 ISHLEYLDLSNNKMNGTLSEIHFVNLTKLTWFSASGNSLILQVNPNWVPPFQLKTLLLMSCHLGPQFPSWLHSQKNLSVL  453 (794)
Q Consensus       374 l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L  453 (794)
                      +++|++|++++|++++. +   ...+++|+.++++.|              +|+.+++++|.+.+.+|  +..+++|+.|
T Consensus       232 l~~L~~L~l~~N~l~~~-~---~~~l~~L~~L~l~~n--------------~L~~L~l~~n~~~~~~~--~~~l~~L~~L  291 (457)
T 3bz5_A          232 LTQLTYFDCSVNPLTEL-D---VSTLSKLTTLHCIQT--------------DLLEIDLTHNTQLIYFQ--AEGCRKIKEL  291 (457)
T ss_dssp             CTTCSEEECCSSCCSCC-C---CTTCTTCCEEECTTC--------------CCSCCCCTTCTTCCEEE--CTTCTTCCCC
T ss_pred             cCCCCEEEeeCCcCCCc-C---HHHCCCCCEEeccCC--------------CCCEEECCCCccCCccc--ccccccCCEE
Confidence            88888888888888753 2   345677777777665              35566667766665555  3556667777


Q ss_pred             eccCCCCCCCcchhHHhccccceeccCcccCCCCCCCEEEccCCcccccCChhhhhcCCCCcEEEcccccccccCCcccc
Q 046398          454 DISNARISDTIPRWFWNSIFQLSGIIPESFKNFSNLEVLNLGDNEFVGKIPTWMGEGFTSLLILILRSNKFDGFLPIQLC  533 (794)
Q Consensus       454 ~Ls~n~l~~~~p~~~~~~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~~~  533 (794)
                      ++++|+..+.+|               .   ..++|+.|++++|              ++|+.|++++|++++. +  +.
T Consensus       292 ~Ls~n~~l~~l~---------------~---~~~~L~~L~l~~~--------------~~L~~L~L~~N~l~~l-~--l~  336 (457)
T 3bz5_A          292 DVTHNTQLYLLD---------------C---QAAGITELDLSQN--------------PKLVYLYLNNTELTEL-D--VS  336 (457)
T ss_dssp             CCTTCTTCCEEE---------------C---TTCCCSCCCCTTC--------------TTCCEEECTTCCCSCC-C--CT
T ss_pred             ECCCCcccceec---------------c---CCCcceEechhhc--------------ccCCEEECCCCccccc-c--cc
Confidence            777776554322               1   2234444444333              4566666666666653 2  66


Q ss_pred             CCCCCCEEEccCCcCcc
Q 046398          534 RLTSLQILDVANNSLSG  550 (794)
Q Consensus       534 ~l~~L~~L~Ls~N~l~~  550 (794)
                      .+++|+.||+++|++++
T Consensus       337 ~l~~L~~L~l~~N~l~~  353 (457)
T 3bz5_A          337 HNTKLKSLSCVNAHIQD  353 (457)
T ss_dssp             TCTTCSEEECCSSCCCB
T ss_pred             cCCcCcEEECCCCCCCC
Confidence            66666666666666654

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=2.4e-35  Score=330.94  Aligned_cols=305  Identities=19%  Similarity=0.185  Sum_probs=168.3

Q ss_pred             CCCEEEccCCcCcCCCCCCcCCCCCCCEEEccCCcccccCCccccCCCCCCeEeccCcccccccChhhhcCCCCCCEEEC
Q 046398          328 SLRTLSLDDNCISGPLPPALGDLSSLTRLDLSRNMLNGSIPLSLGKISHLEYLDLSNNKMNGTLSEIHFVNLTKLTWFSA  407 (794)
Q Consensus       328 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~l  407 (794)
                      +++.|++++|.+++..+..|.++++|++|+|++|.+++..|..+.++++|++|+|++|++. .++...|.++++|+.|++
T Consensus        33 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L  111 (477)
T 2id5_A           33 ETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK-LIPLGVFTGLSNLTKLDI  111 (477)
T ss_dssp             TCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-SCCTTSSTTCTTCCEEEC
T ss_pred             CCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCC-ccCcccccCCCCCCEEEC
Confidence            4444444444444444444444444444444444444444444444444444444444444 333333444444555555


Q ss_pred             cCCcceeEcCCCCcCccccceEecccccCCCCCCcccCCCCCCCEEeccCCCCCCCcchhHHhccccceeccCcccCCCC
Q 046398          408 SGNSLILQVNPNWVPPFQLKTLLLMSCHLGPQFPSWLHSQKNLSVLDISNARISDTIPRWFWNSIFQLSGIIPESFKNFS  487 (794)
Q Consensus       408 s~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~l~~~~p~~l~~l~  487 (794)
                      ++|.+....+..+..+++|++|++++|.+.+..+..+..+++|++|++++|++++.               .+..+..++
T Consensus       112 s~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---------------~~~~l~~l~  176 (477)
T 2id5_A          112 SENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSI---------------PTEALSHLH  176 (477)
T ss_dssp             TTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSC---------------CHHHHTTCT
T ss_pred             CCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCccc---------------ChhHhcccC
Confidence            55444444444444444555555555555444455555556666666666655542               122344556


Q ss_pred             CCCEEEccCCcccccCChhhhhcCCCCcEEEcccccccccCCccccCCCCCCEEEccCCcCcccCCchhhcccccccccc
Q 046398          488 NLEVLNLGDNEFVGKIPTWMGEGFTSLLILILRSNKFDGFLPIQLCRLTSLQILDVANNSLSGTMPGCVNNFSAMATIDS  567 (794)
Q Consensus       488 ~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~  567 (794)
                      +|+.|++++|++.+..+.. +..+++|+.|++++|.+.+.+|.......+|++|++++|++++..+..+.++++      
T Consensus       177 ~L~~L~l~~n~i~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~------  249 (477)
T 2id5_A          177 GLIVLRLRHLNINAIRDYS-FKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVY------  249 (477)
T ss_dssp             TCCEEEEESCCCCEECTTC-SCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTT------
T ss_pred             CCcEEeCCCCcCcEeChhh-cccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccc------
Confidence            6666666666665322222 224566666666666555555555545556666666666665332233333333      


Q ss_pred             ccCCCCcccccccccccccceeeEEEEeccchhhcccccceeEEEcCCCccccccChhhhcccCCCEEecccccccccCC
Q 046398          568 SHQSNAMSYFEVTAYDCEVLEDASIVMKGSMVEYNSILNLVRIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQIP  647 (794)
Q Consensus       568 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip  647 (794)
                                                              |+.|++++|++++..+..+..+++|+.|+|++|++++..|
T Consensus       250 ----------------------------------------L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  289 (477)
T 2id5_A          250 ----------------------------------------LRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEP  289 (477)
T ss_dssp             ----------------------------------------CCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECT
T ss_pred             ----------------------------------------cCeeECCCCcCCccChhhccccccCCEEECCCCccceECH
Confidence                                                    3666666666666666666667777777777777776666


Q ss_pred             ccccccCCCCEEeCCCCcCcccCcccccCCCCCCEEeCcCCcccccCC
Q 046398          648 ENIGNLISIESLDFSTNQLSSKISQSMSSLSFLNHLNVSNNLLTGKIP  695 (794)
Q Consensus       648 ~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP  695 (794)
                      ..|.++++|+.|+|++|++++..+..|..+++|++|++++|++.+..+
T Consensus       290 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~  337 (477)
T 2id5_A          290 YAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCR  337 (477)
T ss_dssp             TTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGG
T ss_pred             HHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccc
Confidence            677777777777777777776666666667777777777777765543

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=1.7e-34  Score=322.51  Aligned_cols=347  Identities=29%  Similarity=0.401  Sum_probs=241.6

Q ss_pred             cCCCCCCEEeCCCCCCCCCCCCcccCCCCCCCEEEcCCCCCCCCCcccccCCccccccccCccccccccccccccccCCC
Q 046398          114 VDLKHLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRCLDLSWSEYALQVHSFSWLSGQIP  193 (794)
Q Consensus       114 ~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~~~~lp  193 (794)
                      ..+++++.|+++++.+..  +|. +..+++|++|++++|.+++..|  ++++++|++|++++|.+.           .++
T Consensus        43 ~~l~~l~~L~l~~~~i~~--l~~-~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~-----------~~~  106 (466)
T 1o6v_A           43 TDLDQVTTLQADRLGIKS--IDG-VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIA-----------DIT  106 (466)
T ss_dssp             HHHHTCCEEECCSSCCCC--CTT-GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-----------CCG
T ss_pred             hHhccccEEecCCCCCcc--Ccc-hhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccc-----------cCh
Confidence            457899999999999984  554 7889999999999999986544  999999999999988754           344


Q ss_pred             CccCCCCCCCEEECcCCCCCCCCCccccCCCCCCeEeeeccCCCCCCCccccCCCCCCcEEEccCCCCCCCCCchhhhcc
Q 046398          194 NRLGNLTSLRHLDLSANKFNSTTAGWLSKFNHLEFLSLSSNGLQGTISSIGLENLTSIKTIDLSLNFELGGPIPTSFVRL  273 (794)
Q Consensus       194 ~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~~~~~~~~~~~~l~~l  273 (794)
                      . +.++++|++|++++|.+++..+  +.++++|++|++++|.+.+ ++  .+..+++|++|+++ + .+.+.  ..+.++
T Consensus       107 ~-~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~~--~~~~l~~L~~L~l~-~-~~~~~--~~~~~l  176 (466)
T 1o6v_A          107 P-LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISD-IS--ALSGLTSLQQLSFG-N-QVTDL--KPLANL  176 (466)
T ss_dssp             G-GTTCTTCCEEECCSSCCCCCGG--GTTCTTCSEEEEEEEEECC-CG--GGTTCTTCSEEEEE-E-SCCCC--GGGTTC
T ss_pred             h-hcCCCCCCEEECCCCCCCCChH--HcCCCCCCEEECCCCccCC-Ch--hhccCCcccEeecC-C-cccCc--hhhccC
Confidence            4 8999999999999999988754  8999999999999999885 33  58899999999996 3 33332  238888


Q ss_pred             CCCCEEEccCCCCCcchHHHHHhhhhcCcCCccEEEeecccccccccccccCCCCCCEEEccCCcCcCCCCCCcCCCCCC
Q 046398          274 CELTSIDVSDVKLSQDLSQVLDILSACGASALESLVFSSSQISGHLTSQLGQFKSLRTLSLDDNCISGPLPPALGDLSSL  353 (794)
Q Consensus       274 ~~L~~L~l~~~~l~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L  353 (794)
                      ++|+.|++++|.+.+..  .+..     +++|++|++++|.+++..+  ++.+++|++|++++|.+++.  ..+..+++|
T Consensus       177 ~~L~~L~l~~n~l~~~~--~l~~-----l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L  245 (466)
T 1o6v_A          177 TTLERLDISSNKVSDIS--VLAK-----LTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNL  245 (466)
T ss_dssp             TTCCEEECCSSCCCCCG--GGGG-----CTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTC
T ss_pred             CCCCEEECcCCcCCCCh--hhcc-----CCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCC
Confidence            88999999888877542  1233     3377778887777776554  56677777777777777643  346677777


Q ss_pred             CEEEccCCcccccCCccccCCCCCCeEeccCcccccccChhhhcCCCCCCEEECcCCcceeEcCCCCcCccccceEeccc
Q 046398          354 TRLDLSRNMLNGSIPLSLGKISHLEYLDLSNNKMNGTLSEIHFVNLTKLTWFSASGNSLILQVNPNWVPPFQLKTLLLMS  433 (794)
Q Consensus       354 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~  433 (794)
                      ++|++++|.+++..+  +..+++|++|++++|.+.+.. .  +..+++|+.|++++|.+.+..+                
T Consensus       246 ~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~-~--~~~l~~L~~L~L~~n~l~~~~~----------------  304 (466)
T 1o6v_A          246 TDLDLANNQISNLAP--LSGLTKLTELKLGANQISNIS-P--LAGLTALTNLELNENQLEDISP----------------  304 (466)
T ss_dssp             SEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCG-G--GTTCTTCSEEECCSSCCSCCGG----------------
T ss_pred             CEEECCCCccccchh--hhcCCCCCEEECCCCccCccc-c--ccCCCccCeEEcCCCcccCchh----------------
Confidence            777777777765443  667777777777777776432 2  5566666666666666543222                


Q ss_pred             ccCCCCCCcccCCCCCCCEEeccCCCCCCCcchhHHhccccceeccCcccCCCCCCCEEEccCCcccccCChhhhhcCCC
Q 046398          434 CHLGPQFPSWLHSQKNLSVLDISNARISDTIPRWFWNSIFQLSGIIPESFKNFSNLEVLNLGDNEFVGKIPTWMGEGFTS  513 (794)
Q Consensus       434 n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~  513 (794)
                                +..+++|+.|++++|++++.               .|  +..+++|+.|++++|++++ ++ .+. .+++
T Consensus       305 ----------~~~l~~L~~L~L~~n~l~~~---------------~~--~~~l~~L~~L~l~~n~l~~-~~-~l~-~l~~  354 (466)
T 1o6v_A          305 ----------ISNLKNLTYLTLYFNNISDI---------------SP--VSSLTKLQRLFFYNNKVSD-VS-SLA-NLTN  354 (466)
T ss_dssp             ----------GGGCTTCSEEECCSSCCSCC---------------GG--GGGCTTCCEEECCSSCCCC-CG-GGT-TCTT
T ss_pred             ----------hcCCCCCCEEECcCCcCCCc---------------hh--hccCccCCEeECCCCccCC-ch-hhc-cCCC
Confidence                      34455556666666655542               11  3445556666666665553 22 222 4556


Q ss_pred             CcEEEcccccccccCCccccCCCCCCEEEccCCcCcc
Q 046398          514 LLILILRSNKFDGFLPIQLCRLTSLQILDVANNSLSG  550 (794)
Q Consensus       514 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~  550 (794)
                      |+.|++++|++++..|  +..+++|+.|++++|++++
T Consensus       355 L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~  389 (466)
T 1o6v_A          355 INWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN  389 (466)
T ss_dssp             CCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred             CCEEeCCCCccCccch--hhcCCCCCEEeccCCcccC
Confidence            6666666666655544  5556666666666666554

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=5.6e-34  Score=318.23  Aligned_cols=347  Identities=27%  Similarity=0.408  Sum_probs=235.0

Q ss_pred             CCCCCCeEeeeccCCCCCCCccccCCCCCCcEEEccCCCCCCCCCchhhhccCCCCEEEccCCCCCcchHHHHHhhhhcC
Q 046398          222 KFNHLEFLSLSSNGLQGTISSIGLENLTSIKTIDLSLNFELGGPIPTSFVRLCELTSIDVSDVKLSQDLSQVLDILSACG  301 (794)
Q Consensus       222 ~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~l~~l~~~~  301 (794)
                      .+++++.|++.++.+. .++  .+..+++|++|+++ ++.+.+..+  +.++++|+.|++++|.+               
T Consensus        44 ~l~~l~~L~l~~~~i~-~l~--~~~~l~~L~~L~Ls-~n~l~~~~~--~~~l~~L~~L~l~~n~l---------------  102 (466)
T 1o6v_A           44 DLDQVTTLQADRLGIK-SID--GVEYLNNLTQINFS-NNQLTDITP--LKNLTKLVDILMNNNQI---------------  102 (466)
T ss_dssp             HHHTCCEEECCSSCCC-CCT--TGGGCTTCCEEECC-SSCCCCCGG--GTTCTTCCEEECCSSCC---------------
T ss_pred             HhccccEEecCCCCCc-cCc--chhhhcCCCEEECC-CCccCCchh--hhccccCCEEECCCCcc---------------
Confidence            3556777777777665 233  25556666666666 334443322  55555555555555544               


Q ss_pred             cCCccEEEeecccccccccccccCCCCCCEEEccCCcCcCCCCCCcCCCCCCCEEEccCCcccccCCccccCCCCCCeEe
Q 046398          302 ASALESLVFSSSQISGHLTSQLGQFKSLRTLSLDDNCISGPLPPALGDLSSLTRLDLSRNMLNGSIPLSLGKISHLEYLD  381 (794)
Q Consensus       302 ~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~  381 (794)
                                    ++..+  +..+++|++|++++|.+++..+  +..+++|++|++++|.+.+ ++ .+..+++|++|+
T Consensus       103 --------------~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~~-~~~~l~~L~~L~  162 (466)
T 1o6v_A          103 --------------ADITP--LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISD-IS-ALSGLTSLQQLS  162 (466)
T ss_dssp             --------------CCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCSEEEEEEEEECC-CG-GGTTCTTCSEEE
T ss_pred             --------------ccChh--hcCCCCCCEEECCCCCCCCChH--HcCCCCCCEEECCCCccCC-Ch-hhccCCcccEee
Confidence                          43332  4555555555555555553322  5555555555555555553 22 355555555555


Q ss_pred             ccCcccccccChhhhcCCCCCCEEECcCCcceeEcCCCCcCccccceEecccccCCCCCCcccCCCCCCCEEeccCCCCC
Q 046398          382 LSNNKMNGTLSEIHFVNLTKLTWFSASGNSLILQVNPNWVPPFQLKTLLLMSCHLGPQFPSWLHSQKNLSVLDISNARIS  461 (794)
Q Consensus       382 Ls~N~l~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~  461 (794)
                      ++ |.+.+ ++  .+.++++|+.|++++|.+...  ..+..+++|++|++++|.+.+..+  +..+++|++|++++|+++
T Consensus       163 l~-~~~~~-~~--~~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~  234 (466)
T 1o6v_A          163 FG-NQVTD-LK--PLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLK  234 (466)
T ss_dssp             EE-ESCCC-CG--GGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCC
T ss_pred             cC-CcccC-ch--hhccCCCCCEEECcCCcCCCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcc
Confidence            54 33321 11  245555556666655554432  124445566666666666665544  566888999999999887


Q ss_pred             CCcchhHHhccccceeccCcccCCCCCCCEEEccCCcccccCChhhhhcCCCCcEEEcccccccccCCccccCCCCCCEE
Q 046398          462 DTIPRWFWNSIFQLSGIIPESFKNFSNLEVLNLGDNEFVGKIPTWMGEGFTSLLILILRSNKFDGFLPIQLCRLTSLQIL  541 (794)
Q Consensus       462 ~~~p~~~~~~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L  541 (794)
                      +                + ..+..+++|+.|++++|++++..|  + ..+++|+.|++++|++++..+  +..+++|++|
T Consensus       235 ~----------------~-~~l~~l~~L~~L~l~~n~l~~~~~--~-~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L  292 (466)
T 1o6v_A          235 D----------------I-GTLASLTNLTDLDLANNQISNLAP--L-SGLTKLTELKLGANQISNISP--LAGLTALTNL  292 (466)
T ss_dssp             C----------------C-GGGGGCTTCSEEECCSSCCCCCGG--G-TTCTTCSEEECCSSCCCCCGG--GTTCTTCSEE
T ss_pred             c----------------c-hhhhcCCCCCEEECCCCccccchh--h-hcCCCCCEEECCCCccCcccc--ccCCCccCeE
Confidence            5                2 246678899999999999885433  3 368899999999999987544  8889999999


Q ss_pred             EccCCcCcccCCchhhccccccccccccCCCCcccccccccccccceeeEEEEeccchhhcccccceeEEEcCCCccccc
Q 046398          542 DVANNSLSGTMPGCVNNFSAMATIDSSHQSNAMSYFEVTAYDCEVLEDASIVMKGSMVEYNSILNLVRIIDVSKNNFSGE  621 (794)
Q Consensus       542 ~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~  621 (794)
                      ++++|++++..+  +..                                              ++.|+.|++++|++++.
T Consensus       293 ~L~~n~l~~~~~--~~~----------------------------------------------l~~L~~L~L~~n~l~~~  324 (466)
T 1o6v_A          293 ELNENQLEDISP--ISN----------------------------------------------LKNLTYLTLYFNNISDI  324 (466)
T ss_dssp             ECCSSCCSCCGG--GGG----------------------------------------------CTTCSEEECCSSCCSCC
T ss_pred             EcCCCcccCchh--hcC----------------------------------------------CCCCCEEECcCCcCCCc
Confidence            999999875433  333                                              34458999999999977


Q ss_pred             cChhhhcccCCCEEecccccccccCCccccccCCCCEEeCCCCcCcccCcccccCCCCCCEEeCcCCccccc
Q 046398          622 IPMELTYLRGLQSLNLSHNIFTGQIPENIGNLISIESLDFSTNQLSSKISQSMSSLSFLNHLNVSNNLLTGK  693 (794)
Q Consensus       622 ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~  693 (794)
                      .|  +..+++|+.|++++|++++.  ..+.++++|+.|++++|++++.+|  +..+++|+.|++++|++++.
T Consensus       325 ~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~~  390 (466)
T 1o6v_A          325 SP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNA  390 (466)
T ss_dssp             GG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEECC
T ss_pred             hh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccCC
Confidence            66  78999999999999999965  578999999999999999999887  88999999999999999984

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=7.5e-34  Score=309.86  Aligned_cols=333  Identities=20%  Similarity=0.175  Sum_probs=216.8

Q ss_pred             cCCCCEEEccCCCCCcchHHHHHhhhhcCcCCccEEEeecccccccccccccCCCCCCEEEccCCcCcCCCCCCcCCCCC
Q 046398          273 LCELTSIDVSDVKLSQDLSQVLDILSACGASALESLVFSSSQISGHLTSQLGQFKSLRTLSLDDNCISGPLPPALGDLSS  352 (794)
Q Consensus       273 l~~L~~L~l~~~~l~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~  352 (794)
                      +.+++.++++++.+....+..+..++     +|++|++++|.+++..+..+..+++|++|++++|.+++..|..++++++
T Consensus        44 l~~l~~l~l~~~~l~~l~~~~~~~l~-----~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~  118 (390)
T 3o6n_A           44 LNNQKIVTFKNSTMRKLPAALLDSFR-----QVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPL  118 (390)
T ss_dssp             GCCCSEEEEESCEESEECTHHHHHCC-----CCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred             cCCceEEEecCCchhhCChhHhcccc-----cCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCC
Confidence            44555555555555444444444433     5555555555555444445555555555555555555444444555555


Q ss_pred             CCEEEccCCcccccCCccccCCCCCCeEeccCcccccccChhhhcCCCCCCEEECcCCcceeEcCCCCcCccccceEecc
Q 046398          353 LTRLDLSRNMLNGSIPLSLGKISHLEYLDLSNNKMNGTLSEIHFVNLTKLTWFSASGNSLILQVNPNWVPPFQLKTLLLM  432 (794)
Q Consensus       353 L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~  432 (794)
                      |++|++++|.+++..+..+..+++|++|++++|.+.                         ...+..+..+++|++|+++
T Consensus       119 L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~-------------------------~~~~~~~~~l~~L~~L~l~  173 (390)
T 3o6n_A          119 LTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLE-------------------------RIEDDTFQATTSLQNLQLS  173 (390)
T ss_dssp             CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-------------------------BCCTTTTSSCTTCCEEECC
T ss_pred             CCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccC-------------------------ccChhhccCCCCCCEEECC
Confidence            555555555554322222344555555555555554                         4333444444455555555


Q ss_pred             cccCCCCCCcccCCCCCCCEEeccCCCCCCCcchhHHhccccceeccCcccCCCCCCCEEEccCCcccccCChhhhhcCC
Q 046398          433 SCHLGPQFPSWLHSQKNLSVLDISNARISDTIPRWFWNSIFQLSGIIPESFKNFSNLEVLNLGDNEFVGKIPTWMGEGFT  512 (794)
Q Consensus       433 ~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~  512 (794)
                      +|.+++.   .+..+++|+.|++++|.+++                    +...++|++|++++|++. .+|..   ..+
T Consensus       174 ~n~l~~~---~~~~l~~L~~L~l~~n~l~~--------------------~~~~~~L~~L~l~~n~l~-~~~~~---~~~  226 (390)
T 3o6n_A          174 SNRLTHV---DLSLIPSLFHANVSYNLLST--------------------LAIPIAVEELDASHNSIN-VVRGP---VNV  226 (390)
T ss_dssp             SSCCSBC---CGGGCTTCSEEECCSSCCSE--------------------EECCSSCSEEECCSSCCC-EEECC---CCS
T ss_pred             CCcCCcc---ccccccccceeecccccccc--------------------cCCCCcceEEECCCCeee-ecccc---ccc
Confidence            5554433   14456778888888887764                    123357888888888887 44543   357


Q ss_pred             CCcEEEcccccccccCCccccCCCCCCEEEccCCcCcccCCchhhccccccccccccCCCCcccccccccccccceeeEE
Q 046398          513 SLLILILRSNKFDGFLPIQLCRLTSLQILDVANNSLSGTMPGCVNNFSAMATIDSSHQSNAMSYFEVTAYDCEVLEDASI  592 (794)
Q Consensus       513 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~  592 (794)
                      +|+.|++++|++++.  ..+..+++|++|++++|.+++..|..+..+++|                              
T Consensus       227 ~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L------------------------------  274 (390)
T 3o6n_A          227 ELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRL------------------------------  274 (390)
T ss_dssp             SCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSC------------------------------
T ss_pred             cccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccC------------------------------
Confidence            889999999988864  568888999999999999888777777665554                              


Q ss_pred             EEeccchhhcccccceeEEEcCCCccccccChhhhcccCCCEEecccccccccCCccccccCCCCEEeCCCCcCcccCcc
Q 046398          593 VMKGSMVEYNSILNLVRIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQIPENIGNLISIESLDFSTNQLSSKISQ  672 (794)
Q Consensus       593 ~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~  672 (794)
                                      +.|++++|++++ +|..+..+++|++|+|++|+++ .+|..++.+++|+.|++++|+++.. | 
T Consensus       275 ----------------~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~-  334 (390)
T 3o6n_A          275 ----------------ERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K-  334 (390)
T ss_dssp             ----------------CEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C-
T ss_pred             ----------------CEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCcccee-C-
Confidence                            788999999884 5667788999999999999998 6788899999999999999999865 3 


Q ss_pred             cccCCCCCCEEeCcCCcccccCCCCCccCccCcccccCC-CcCCC
Q 046398          673 SMSSLSFLNHLNVSNNLLTGKIPSSTQLQSFDASCFVGN-NLCGP  716 (794)
Q Consensus       673 ~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gn-~lcg~  716 (794)
                       +..+++|+.|++++|++.+.-.. ..+..+....+.++ ..|+.
T Consensus       335 -~~~~~~L~~L~l~~N~~~~~~~~-~~~~~~~~~~~~~~~~~c~~  377 (390)
T 3o6n_A          335 -LSTHHTLKNLTLSHNDWDCNSLR-ALFRNVARPAVDDADQHCKI  377 (390)
T ss_dssp             -CCTTCCCSEEECCSSCEEHHHHH-HHTTTCCTTTBCCCCSCCCT
T ss_pred             -chhhccCCEEEcCCCCccchhHH-HHHHHHHhhcccccCceecc
Confidence             67889999999999999875321 23444444445555 55543

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=9.9e-34  Score=317.74  Aligned_cols=328  Identities=21%  Similarity=0.217  Sum_probs=277.8

Q ss_pred             CccEEEeecccccccccccccCCCCCCEEEccCCcCcCCCCCCcCCCCCCCEEEccCCcccccCCccccCCCCCCeEecc
Q 046398          304 ALESLVFSSSQISGHLTSQLGQFKSLRTLSLDDNCISGPLPPALGDLSSLTRLDLSRNMLNGSIPLSLGKISHLEYLDLS  383 (794)
Q Consensus       304 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls  383 (794)
                      +++.|++++|.+++..+..|..+++|++|+|++|.+++..|..|.++++|++|+|++|.+++..+..+..+++|++|+++
T Consensus        33 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls  112 (477)
T 2id5_A           33 ETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDIS  112 (477)
T ss_dssp             TCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECT
T ss_pred             CCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECC
Confidence            78888999999888888889999999999999999998888889999999999999999986666678889999999999


Q ss_pred             CcccccccChhhhcCCCCCCEEECcCCcceeEcCCCCcCccccceEecccccCCCCCCcccCCCCCCCEEeccCCCCCCC
Q 046398          384 NNKMNGTLSEIHFVNLTKLTWFSASGNSLILQVNPNWVPPFQLKTLLLMSCHLGPQFPSWLHSQKNLSVLDISNARISDT  463 (794)
Q Consensus       384 ~N~l~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~  463 (794)
                      +|++.+..+. .|..+++|+.|++++|.+....+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+.+ 
T Consensus       113 ~n~i~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~-  190 (477)
T 2id5_A          113 ENKIVILLDY-MFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINA-  190 (477)
T ss_dssp             TSCCCEECTT-TTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCE-
T ss_pred             CCccccCChh-HccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcE-
Confidence            9999855444 78899999999999999998888888899999999999999988777789999999999999998875 


Q ss_pred             cchhHHhccccceeccCcccCCCCCCCEEEccCCcccccCChhhhhcCCCCcEEEcccccccccCCccccCCCCCCEEEc
Q 046398          464 IPRWFWNSIFQLSGIIPESFKNFSNLEVLNLGDNEFVGKIPTWMGEGFTSLLILILRSNKFDGFLPIQLCRLTSLQILDV  543 (794)
Q Consensus       464 ~p~~~~~~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L  543 (794)
                                    ..+..+..+++|+.|++++|.+.+.+|...+ ...+|+.|++++|++++..+..+..+++|++|+|
T Consensus       191 --------------~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L  255 (477)
T 2id5_A          191 --------------IRDYSFKRLYRLKVLEISHWPYLDTMTPNCL-YGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNL  255 (477)
T ss_dssp             --------------ECTTCSCSCTTCCEEEEECCTTCCEECTTTT-TTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEEC
T ss_pred             --------------eChhhcccCcccceeeCCCCccccccCcccc-cCccccEEECcCCcccccCHHHhcCccccCeeEC
Confidence                          3456788999999999999998888888777 4669999999999999766678999999999999


Q ss_pred             cCCcCcccCCchhhccccccccccccCCCCcccccccccccccceeeEEEEeccchhhcccccceeEEEcCCCccccccC
Q 046398          544 ANNSLSGTMPGCVNNFSAMATIDSSHQSNAMSYFEVTAYDCEVLEDASIVMKGSMVEYNSILNLVRIIDVSKNNFSGEIP  623 (794)
Q Consensus       544 s~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip  623 (794)
                      ++|++++..+..+.++++|                                              +.|++++|++++..|
T Consensus       256 s~n~l~~~~~~~~~~l~~L----------------------------------------------~~L~L~~n~l~~~~~  289 (477)
T 2id5_A          256 SYNPISTIEGSMLHELLRL----------------------------------------------QEIQLVGGQLAVVEP  289 (477)
T ss_dssp             CSSCCCEECTTSCTTCTTC----------------------------------------------CEEECCSSCCSEECT
T ss_pred             CCCcCCccChhhccccccC----------------------------------------------CEEECCCCccceECH
Confidence            9999997777666655544                                              899999999999999


Q ss_pred             hhhhcccCCCEEecccccccccCCccccccCCCCEEeCCCCcCcccCcccccCCCCCCEEeCcCCcccccCC
Q 046398          624 MELTYLRGLQSLNLSHNIFTGQIPENIGNLISIESLDFSTNQLSSKISQSMSSLSFLNHLNVSNNLLTGKIP  695 (794)
Q Consensus       624 ~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP  695 (794)
                      ..+..+++|+.|+|++|++++..+..|..+++|+.|+|++|++....+.. .-...+..+++.++.....-|
T Consensus       290 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~~~-~~~~~~~~~~~~~~~~~C~~p  360 (477)
T 2id5_A          290 YAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRLL-WVFRRRWRLNFNRQQPTCATP  360 (477)
T ss_dssp             TTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGGGH-HHHTTTTSSCCTTCCCBEEES
T ss_pred             HHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccchH-hHHhhhhccccCccCceeCCc
Confidence            99999999999999999999777778899999999999999998754321 111223344555555544434

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=100.00  E-value=1e-33  Score=325.87  Aligned_cols=334  Identities=20%  Similarity=0.184  Sum_probs=231.1

Q ss_pred             cCCCCEEEccCCCCCcchHHHHHhhhhcCcCCccEEEeecccccccccccccCCCCCCEEEccCCcCcCCCCCCcCCCCC
Q 046398          273 LCELTSIDVSDVKLSQDLSQVLDILSACGASALESLVFSSSQISGHLTSQLGQFKSLRTLSLDDNCISGPLPPALGDLSS  352 (794)
Q Consensus       273 l~~L~~L~l~~~~l~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~  352 (794)
                      +.+++.++++++.+....+..+..++     +|++|++++|.+++..+..|+.+++|++|+|++|.+++..|..|+++++
T Consensus        50 l~~l~~l~l~~~~l~~lp~~~~~~l~-----~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~  124 (597)
T 3oja_B           50 LNNQKIVTFKNSTMRKLPAALLDSFR-----QVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPL  124 (597)
T ss_dssp             GCCCSEEEESSCEESEECTHHHHHCC-----CCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred             CCCceEEEeeCCCCCCcCHHHHccCC-----CCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCC
Confidence            45566666666665555554455444     5666666666655555555555566666666666655555555555556


Q ss_pred             CCEEEccCCcccccCCccccCCCCCCeEeccCcccccccChhhhcCCCCCCEEECcCCcceeEcCCCCcCccccceEecc
Q 046398          353 LTRLDLSRNMLNGSIPLSLGKISHLEYLDLSNNKMNGTLSEIHFVNLTKLTWFSASGNSLILQVNPNWVPPFQLKTLLLM  432 (794)
Q Consensus       353 L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~  432 (794)
                      |++|+|++|.+++..+..++.+++|++|++++|.+.+..+. .+..+++|+.|++++|                      
T Consensus       125 L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~L~~N----------------------  181 (597)
T 3oja_B          125 LTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDD-TFQATTSLQNLQLSSN----------------------  181 (597)
T ss_dssp             CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTT-TTTTCTTCCEEECTTS----------------------
T ss_pred             CCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChh-hhhcCCcCcEEECcCC----------------------
Confidence            66666666655543333345555555555555555533222 4455555555555555                      


Q ss_pred             cccCCCCCCcccCCCCCCCEEeccCCCCCCCcchhHHhccccceeccCcccCCCCCCCEEEccCCcccccCChhhhhcCC
Q 046398          433 SCHLGPQFPSWLHSQKNLSVLDISNARISDTIPRWFWNSIFQLSGIIPESFKNFSNLEVLNLGDNEFVGKIPTWMGEGFT  512 (794)
Q Consensus       433 ~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~  512 (794)
                        .+++..   +..+++|+.|++++|.+++                    +...++|+.|++++|.++ .+|...   .+
T Consensus       182 --~l~~~~---~~~l~~L~~L~l~~n~l~~--------------------l~~~~~L~~L~ls~n~l~-~~~~~~---~~  232 (597)
T 3oja_B          182 --RLTHVD---LSLIPSLFHANVSYNLLST--------------------LAIPIAVEELDASHNSIN-VVRGPV---NV  232 (597)
T ss_dssp             --CCSBCC---GGGCTTCSEEECCSSCCSE--------------------EECCTTCSEEECCSSCCC-EEECSC---CS
T ss_pred             --CCCCcC---hhhhhhhhhhhcccCcccc--------------------ccCCchhheeeccCCccc-cccccc---CC
Confidence              444321   3456778888888887764                    223457888889888887 444432   46


Q ss_pred             CCcEEEcccccccccCCccccCCCCCCEEEccCCcCcccCCchhhccccccccccccCCCCcccccccccccccceeeEE
Q 046398          513 SLLILILRSNKFDGFLPIQLCRLTSLQILDVANNSLSGTMPGCVNNFSAMATIDSSHQSNAMSYFEVTAYDCEVLEDASI  592 (794)
Q Consensus       513 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~  592 (794)
                      +|+.|+|++|.+++  +..+..+++|+.|+|++|.+++..|..+.++++|                              
T Consensus       233 ~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L------------------------------  280 (597)
T 3oja_B          233 ELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRL------------------------------  280 (597)
T ss_dssp             CCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSC------------------------------
T ss_pred             CCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCccCC------------------------------
Confidence            88999999998886  3678888999999999999988888777766555                              


Q ss_pred             EEeccchhhcccccceeEEEcCCCccccccChhhhcccCCCEEecccccccccCCccccccCCCCEEeCCCCcCcccCcc
Q 046398          593 VMKGSMVEYNSILNLVRIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQIPENIGNLISIESLDFSTNQLSSKISQ  672 (794)
Q Consensus       593 ~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~  672 (794)
                                      +.|+|++|++++ +|..+..+++|+.|+|++|.++ .+|..++.+++|+.|+|++|++++..  
T Consensus       281 ----------------~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~--  340 (597)
T 3oja_B          281 ----------------ERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK--  340 (597)
T ss_dssp             ----------------CEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC--
T ss_pred             ----------------CEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCcC--
Confidence                            788999999985 5777788999999999999999 78888999999999999999998753  


Q ss_pred             cccCCCCCCEEeCcCCcccccCCCCCccCccCcccccCC-CcCCCC
Q 046398          673 SMSSLSFLNHLNVSNNLLTGKIPSSTQLQSFDASCFVGN-NLCGPP  717 (794)
Q Consensus       673 ~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gn-~lcg~~  717 (794)
                       +..+++|+.|++++|++++..+. ..+..+....+.++ ..|+.+
T Consensus       341 -~~~~~~L~~L~l~~N~~~~~~~~-~~~~~~~~~~~~~~~~~C~~~  384 (597)
T 3oja_B          341 -LSTHHTLKNLTLSHNDWDCNSLR-ALFRNVARPAVDDADQHCKID  384 (597)
T ss_dssp             -CCTTCCCSEEECCSSCEEHHHHH-HHTTTCCTTTBCCCCCCCCTT
T ss_pred             -hhhcCCCCEEEeeCCCCCChhHH-HHHHHHhhhccccccccCCcc
Confidence             67789999999999999987432 34566666677888 888764

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=100.00  E-value=8.3e-34  Score=298.91  Aligned_cols=258  Identities=26%  Similarity=0.501  Sum_probs=224.9

Q ss_pred             CCCCeEeccCccccc--ccChhhhcCCCCCCEEECcC-CcceeEcCCCCcCccccceEecccccCCCCCCcccCCCCCCC
Q 046398          375 SHLEYLDLSNNKMNG--TLSEIHFVNLTKLTWFSASG-NSLILQVNPNWVPPFQLKTLLLMSCHLGPQFPSWLHSQKNLS  451 (794)
Q Consensus       375 ~~L~~L~Ls~N~l~~--~~~~~~~~~l~~L~~L~ls~-n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~  451 (794)
                      .+++.|++++|.+.+  .+|. .+.++++|++|++++ |.                        +.+.+|..+..+++|+
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~-~l~~l~~L~~L~L~~~n~------------------------l~~~~p~~l~~l~~L~  104 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPS-SLANLPYLNFLYIGGINN------------------------LVGPIPPAIAKLTQLH  104 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCG-GGGGCTTCSEEEEEEETT------------------------EESCCCGGGGGCTTCS
T ss_pred             ceEEEEECCCCCccCCcccCh-hHhCCCCCCeeeCCCCCc------------------------ccccCChhHhcCCCCC
Confidence            467888888888876  6665 566666666666663 44                        4456677788888999


Q ss_pred             EEeccCCCCCCCcchhHHhccccceeccCcccCCCCCCCEEEccCCcccccCChhhhhcCCCCcEEEcccccccccCCcc
Q 046398          452 VLDISNARISDTIPRWFWNSIFQLSGIIPESFKNFSNLEVLNLGDNEFVGKIPTWMGEGFTSLLILILRSNKFDGFLPIQ  531 (794)
Q Consensus       452 ~L~Ls~n~l~~~~p~~~~~~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~  531 (794)
                      +|++++|++++               .+|..+..+++|++|++++|++++.+|..+. .+++|++|++++|++++.+|..
T Consensus       105 ~L~Ls~n~l~~---------------~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~-~l~~L~~L~L~~N~l~~~~p~~  168 (313)
T 1ogq_A          105 YLYITHTNVSG---------------AIPDFLSQIKTLVTLDFSYNALSGTLPPSIS-SLPNLVGITFDGNRISGAIPDS  168 (313)
T ss_dssp             EEEEEEECCEE---------------ECCGGGGGCTTCCEEECCSSEEESCCCGGGG-GCTTCCEEECCSSCCEEECCGG
T ss_pred             EEECcCCeeCC---------------cCCHHHhCCCCCCEEeCCCCccCCcCChHHh-cCCCCCeEECcCCcccCcCCHH
Confidence            99999997764               4677788899999999999999988898877 6999999999999999999999


Q ss_pred             ccCCC-CCCEEEccCCcCcccCCchhhccccccccccccCCCCcccccccccccccceeeEEEEeccchhhcccccceeE
Q 046398          532 LCRLT-SLQILDVANNSLSGTMPGCVNNFSAMATIDSSHQSNAMSYFEVTAYDCEVLEDASIVMKGSMVEYNSILNLVRI  610 (794)
Q Consensus       532 ~~~l~-~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~  610 (794)
                      +..++ +|++|++++|++++.+|..+..++ |                                              +.
T Consensus       169 l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L----------------------------------------------~~  201 (313)
T 1ogq_A          169 YGSFSKLFTSMTISRNRLTGKIPPTFANLN-L----------------------------------------------AF  201 (313)
T ss_dssp             GGCCCTTCCEEECCSSEEEEECCGGGGGCC-C----------------------------------------------SE
T ss_pred             HhhhhhcCcEEECcCCeeeccCChHHhCCc-c----------------------------------------------cE
Confidence            99998 999999999999999888776543 3                                              88


Q ss_pred             EEcCCCccccccChhhhcccCCCEEecccccccccCCccccccCCCCEEeCCCCcCcccCcccccCCCCCCEEeCcCCcc
Q 046398          611 IDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQIPENIGNLISIESLDFSTNQLSSKISQSMSSLSFLNHLNVSNNLL  690 (794)
Q Consensus       611 LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l  690 (794)
                      |++++|++++.+|..+..+++|+.|+|++|++++.+|. +..+++|++|+|++|++++.+|..+..+++|++|++++|++
T Consensus       202 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l  280 (313)
T 1ogq_A          202 VDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNL  280 (313)
T ss_dssp             EECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEE
T ss_pred             EECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcc
Confidence            99999999999999999999999999999999977766 88999999999999999999999999999999999999999


Q ss_pred             cccCCCCCccCccCcccccCC-CcCCCCCCCC
Q 046398          691 TGKIPSSTQLQSFDASCFVGN-NLCGPPLPSC  721 (794)
Q Consensus       691 ~g~iP~~~~~~~~~~~~~~gn-~lcg~~~~~c  721 (794)
                      +|.+|...++..+....+.+| .+||.|++.|
T Consensus       281 ~~~ip~~~~l~~L~~l~l~~N~~lc~~p~~~C  312 (313)
T 1ogq_A          281 CGEIPQGGNLQRFDVSAYANNKCLCGSPLPAC  312 (313)
T ss_dssp             EEECCCSTTGGGSCGGGTCSSSEEESTTSSCC
T ss_pred             cccCCCCccccccChHHhcCCCCccCCCCCCC
Confidence            999999988999999999999 7999887766

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=3.8e-33  Score=304.32  Aligned_cols=311  Identities=23%  Similarity=0.268  Sum_probs=186.5

Q ss_pred             cCCCCCCEEeCCCCCCCCCCCCcc-cCCCCCCCEEEcCCCCCCCCCcccccCCccccccccCccccccccccccccccCC
Q 046398          114 VDLKHLTHLDLSGNDFQGIRIPKY-LGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRCLDLSWSEYALQVHSFSWLSGQI  192 (794)
Q Consensus       114 ~~l~~L~~L~Ls~n~l~~~~~p~~-~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~~~~l  192 (794)
                      ..++++++|++++|.++.  +|.. +..+++|++|++++|.+++..+..|+.+++|++|++++|.+          .+..
T Consensus        42 ~~l~~l~~l~l~~~~l~~--l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l----------~~~~  109 (390)
T 3o6n_A           42 ITLNNQKIVTFKNSTMRK--LPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAI----------RYLP  109 (390)
T ss_dssp             GGGCCCSEEEEESCEESE--ECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC----------CCCC
T ss_pred             cccCCceEEEecCCchhh--CChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCC----------CcCC
Confidence            457888999999988884  5554 67888999999999988877777888888888888887774          3444


Q ss_pred             CCccCCCCCCCEEECcCCCCCCCCCccccCCCCCCeEeeeccCCCCCCCccccCCCCCCcEEEccCCCCCCCCCchhhhc
Q 046398          193 PNRLGNLTSLRHLDLSANKFNSTTAGWLSKFNHLEFLSLSSNGLQGTISSIGLENLTSIKTIDLSLNFELGGPIPTSFVR  272 (794)
Q Consensus       193 p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~~~~~~~~~~~~l~~  272 (794)
                      |..++++++|++|++++|.++...+..+.++++|++|++++|.+++..+. .+..+++|++|+++ ++.+++.   .+..
T Consensus       110 ~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~l~-~n~l~~~---~~~~  184 (390)
T 3o6n_A          110 PHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDD-TFQATTSLQNLQLS-SNRLTHV---DLSL  184 (390)
T ss_dssp             TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTT-TTSSCTTCCEEECC-SSCCSBC---CGGG
T ss_pred             HHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChh-hccCCCCCCEEECC-CCcCCcc---cccc
Confidence            56678888888888888888877766678888888888888888744443 67777777777777 4444432   2344


Q ss_pred             cCCCCEEEccCCCCCcchHHHHHhhhhcCcCCccEEEeecccccccccccccCCCCCCEEEccCCcCcCCCCCCcCCCCC
Q 046398          273 LCELTSIDVSDVKLSQDLSQVLDILSACGASALESLVFSSSQISGHLTSQLGQFKSLRTLSLDDNCISGPLPPALGDLSS  352 (794)
Q Consensus       273 l~~L~~L~l~~~~l~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~  352 (794)
                      +++|+.+++++|.+++.                                  ...++|++|++++|.+... |..  ..++
T Consensus       185 l~~L~~L~l~~n~l~~~----------------------------------~~~~~L~~L~l~~n~l~~~-~~~--~~~~  227 (390)
T 3o6n_A          185 IPSLFHANVSYNLLSTL----------------------------------AIPIAVEELDASHNSINVV-RGP--VNVE  227 (390)
T ss_dssp             CTTCSEEECCSSCCSEE----------------------------------ECCSSCSEEECCSSCCCEE-ECC--CCSS
T ss_pred             ccccceeeccccccccc----------------------------------CCCCcceEEECCCCeeeec-ccc--cccc
Confidence            55566666655554431                                  1123444555555444422 211  1244


Q ss_pred             CCEEEccCCcccccCCccccCCCCCCeEeccCcccccccChhhhcCCCCCCEEECcCCcceeEcCCCCcCccccceEecc
Q 046398          353 LTRLDLSRNMLNGSIPLSLGKISHLEYLDLSNNKMNGTLSEIHFVNLTKLTWFSASGNSLILQVNPNWVPPFQLKTLLLM  432 (794)
Q Consensus       353 L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~  432 (794)
                      |++|++++|.+++.  ..+..+++|++|++++|.+.+..+. .+..+++|+.|++++|.+++.                 
T Consensus       228 L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~-----------------  287 (390)
T 3o6n_A          228 LTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYH-PFVKMQRLERLYISNNRLVAL-----------------  287 (390)
T ss_dssp             CCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESG-GGTTCSSCCEEECCSSCCCEE-----------------
T ss_pred             ccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChh-HccccccCCEEECCCCcCccc-----------------
Confidence            55555555555432  2445555555555555555533333 445555555555555544332                 


Q ss_pred             cccCCCCCCcccCCCCCCCEEeccCCCCCCCcchhHHhccccceeccCcccCCCCCCCEEEccCCcccccCChhhhhcCC
Q 046398          433 SCHLGPQFPSWLHSQKNLSVLDISNARISDTIPRWFWNSIFQLSGIIPESFKNFSNLEVLNLGDNEFVGKIPTWMGEGFT  512 (794)
Q Consensus       433 ~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~  512 (794)
                              |..+..+++|++|++++|++++                +|..+..+++|++|++++|+++ .++  + ..++
T Consensus       288 --------~~~~~~l~~L~~L~L~~n~l~~----------------~~~~~~~l~~L~~L~L~~N~i~-~~~--~-~~~~  339 (390)
T 3o6n_A          288 --------NLYGQPIPTLKVLDLSHNHLLH----------------VERNQPQFDRLENLYLDHNSIV-TLK--L-STHH  339 (390)
T ss_dssp             --------ECSSSCCTTCCEEECCSSCCCC----------------CGGGHHHHTTCSEEECCSSCCC-CCC--C-CTTC
T ss_pred             --------CcccCCCCCCCEEECCCCccee----------------cCccccccCcCCEEECCCCccc-eeC--c-hhhc
Confidence                    1112234445555555555443                2333344455555555555554 333  1 1355


Q ss_pred             CCcEEEcccccccc
Q 046398          513 SLLILILRSNKFDG  526 (794)
Q Consensus       513 ~L~~L~L~~n~l~~  526 (794)
                      +|+.|++++|++..
T Consensus       340 ~L~~L~l~~N~~~~  353 (390)
T 3o6n_A          340 TLKNLTLSHNDWDC  353 (390)
T ss_dssp             CCSEEECCSSCEEH
T ss_pred             cCCEEEcCCCCccc
Confidence            56666666665554

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=100.00  E-value=2.4e-32  Score=314.40  Aligned_cols=242  Identities=23%  Similarity=0.243  Sum_probs=144.9

Q ss_pred             CCCCCCEEeCCCCCCCCCCCCc-ccCCCCCCCEEEcCCCCCCCCCcccccCCccccccccCccccccccccccccccCCC
Q 046398          115 DLKHLTHLDLSGNDFQGIRIPK-YLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRCLDLSWSEYALQVHSFSWLSGQIP  193 (794)
Q Consensus       115 ~l~~L~~L~Ls~n~l~~~~~p~-~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~~~~lp  193 (794)
                      .+++++.|++++|.+..  +|. .+..+++|++|+|++|.+++..|..|+.+++|++|+|++|.+          .+..|
T Consensus        49 ~l~~l~~l~l~~~~l~~--lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l----------~~~~~  116 (597)
T 3oja_B           49 TLNNQKIVTFKNSTMRK--LPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAI----------RYLPP  116 (597)
T ss_dssp             GGCCCSEEEESSCEESE--ECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC----------CCCCT
T ss_pred             cCCCceEEEeeCCCCCC--cCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcC----------CCCCH
Confidence            56788888888888874  444 467788888888888888877777888888888888887763          34455


Q ss_pred             CccCCCCCCCEEECcCCCCCCCCCccccCCCCCCeEeeeccCCCCCCCccccCCCCCCcEEEccCCCCCCCCCchhhhcc
Q 046398          194 NRLGNLTSLRHLDLSANKFNSTTAGWLSKFNHLEFLSLSSNGLQGTISSIGLENLTSIKTIDLSLNFELGGPIPTSFVRL  273 (794)
Q Consensus       194 ~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~~~~~~~~~~~~l~~l  273 (794)
                      ..|+++++|++|+|++|.+++.++..|.++++|++|++++|.+++..+. .+..+++|++|+++ +|.+.+.   .+..+
T Consensus       117 ~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~L~-~N~l~~~---~~~~l  191 (597)
T 3oja_B          117 HVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDD-TFQATTSLQNLQLS-SNRLTHV---DLSLI  191 (597)
T ss_dssp             TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTT-TTTTCTTCCEEECT-TSCCSBC---CGGGC
T ss_pred             HHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChh-hhhcCCcCcEEECc-CCCCCCc---Chhhh
Confidence            6677888888888888888877777677888888888888877755444 66777777777776 4444433   13445


Q ss_pred             CCCCEEEccCCCCCcchHHHHHhhhhcCcCCccEEEeecccccccccccccCCCCCCEEEccCCcCcCCCCCCcCCCCCC
Q 046398          274 CELTSIDVSDVKLSQDLSQVLDILSACGASALESLVFSSSQISGHLTSQLGQFKSLRTLSLDDNCISGPLPPALGDLSSL  353 (794)
Q Consensus       274 ~~L~~L~l~~~~l~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L  353 (794)
                      ++|+.|++++|.+++..          ..++|++|++++|.++...+..   .++|+.|++++|.+++.  ..+..+++|
T Consensus       192 ~~L~~L~l~~n~l~~l~----------~~~~L~~L~ls~n~l~~~~~~~---~~~L~~L~L~~n~l~~~--~~l~~l~~L  256 (597)
T 3oja_B          192 PSLFHANVSYNLLSTLA----------IPIAVEELDASHNSINVVRGPV---NVELTILKLQHNNLTDT--AWLLNYPGL  256 (597)
T ss_dssp             TTCSEEECCSSCCSEEE----------CCTTCSEEECCSSCCCEEECSC---CSCCCEEECCSSCCCCC--GGGGGCTTC
T ss_pred             hhhhhhhcccCcccccc----------CCchhheeeccCCccccccccc---CCCCCEEECCCCCCCCC--hhhccCCCC
Confidence            55555555555544311          1114444444444444322211   13444444444444431  333444444


Q ss_pred             CEEEccCCcccccCCccccCCCCCCeEeccCcccc
Q 046398          354 TRLDLSRNMLNGSIPLSLGKISHLEYLDLSNNKMN  388 (794)
Q Consensus       354 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~  388 (794)
                      ++|++++|.+++..|..++.+++|++|+|++|.+.
T Consensus       257 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~  291 (597)
T 3oja_B          257 VEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV  291 (597)
T ss_dssp             SEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCC
T ss_pred             CEEECCCCccCCCCHHHhcCccCCCEEECCCCCCC
Confidence            44444444444444444444444444444444433

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=100.00  E-value=1.4e-31  Score=287.07  Aligned_cols=302  Identities=24%  Similarity=0.365  Sum_probs=197.7

Q ss_pred             CccEEEeecccccccccccccCCCCCCEEEccCCcCcCCCCCCcCCCCCCCEEEccCCcccccCCccccCCCCCCeEecc
Q 046398          304 ALESLVFSSSQISGHLTSQLGQFKSLRTLSLDDNCISGPLPPALGDLSSLTRLDLSRNMLNGSIPLSLGKISHLEYLDLS  383 (794)
Q Consensus       304 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls  383 (794)
                      +|++|+++++.+... + .+..+++|++|++++|.+++. +. +..+++|++|++++|.+++ ++ .+..+++|++|+++
T Consensus        45 ~L~~L~l~~~~i~~~-~-~~~~~~~L~~L~l~~n~i~~~-~~-~~~l~~L~~L~L~~n~i~~-~~-~~~~l~~L~~L~l~  118 (347)
T 4fmz_A           45 SITKLVVAGEKVASI-Q-GIEYLTNLEYLNLNGNQITDI-SP-LSNLVKLTNLYIGTNKITD-IS-ALQNLTNLRELYLN  118 (347)
T ss_dssp             TCSEEECCSSCCCCC-T-TGGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCC-CG-GGTTCTTCSEEECT
T ss_pred             cccEEEEeCCccccc-h-hhhhcCCccEEEccCCccccc-hh-hhcCCcCCEEEccCCcccC-ch-HHcCCCcCCEEECc
Confidence            444444444444432 1 244455555555555555532 22 4555555555555555542 22 35555555555555


Q ss_pred             CcccccccChhhhcCCCCCCEEECcCCcceeEcCCCCcCccccceEecccccCCCCCCcccCCCCCCCEEeccCCCCCCC
Q 046398          384 NNKMNGTLSEIHFVNLTKLTWFSASGNSLILQVNPNWVPPFQLKTLLLMSCHLGPQFPSWLHSQKNLSVLDISNARISDT  463 (794)
Q Consensus       384 ~N~l~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~  463 (794)
                      +|.+.+ ++.  +..+++|+.|++++|......+ .+..+++|++|++++|.+.+..+  +..+++|++|++++|++.+ 
T Consensus       119 ~n~i~~-~~~--~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~-  191 (347)
T 4fmz_A          119 EDNISD-ISP--LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIED-  191 (347)
T ss_dssp             TSCCCC-CGG--GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCC-
T ss_pred             CCcccC-chh--hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCcccc-
Confidence            555542 222  4455555555555553332221 14445556666666665554333  6677888888888888775 


Q ss_pred             cchhHHhccccceeccCcccCCCCCCCEEEccCCcccccCChhhhhcCCCCcEEEcccccccccCCccccCCCCCCEEEc
Q 046398          464 IPRWFWNSIFQLSGIIPESFKNFSNLEVLNLGDNEFVGKIPTWMGEGFTSLLILILRSNKFDGFLPIQLCRLTSLQILDV  543 (794)
Q Consensus       464 ~p~~~~~~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L  543 (794)
                                     ++. +..+++|+.|++++|++++ ++. + ..+++|+.|++++|++++..+  +..+++|++|++
T Consensus       192 ---------------~~~-~~~l~~L~~L~l~~n~l~~-~~~-~-~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l  250 (347)
T 4fmz_A          192 ---------------ISP-LASLTSLHYFTAYVNQITD-ITP-V-ANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEI  250 (347)
T ss_dssp             ---------------CGG-GGGCTTCCEEECCSSCCCC-CGG-G-GGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEEC
T ss_pred             ---------------ccc-ccCCCccceeecccCCCCC-Cch-h-hcCCcCCEEEccCCccCCCcc--hhcCCCCCEEEC
Confidence                           222 6677888888888888874 333 3 368888889998888886544  788888999999


Q ss_pred             cCCcCcccCCchhhccccccccccccCCCCcccccccccccccceeeEEEEeccchhhcccccceeEEEcCCCccccccC
Q 046398          544 ANNSLSGTMPGCVNNFSAMATIDSSHQSNAMSYFEVTAYDCEVLEDASIVMKGSMVEYNSILNLVRIIDVSKNNFSGEIP  623 (794)
Q Consensus       544 s~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip  623 (794)
                      ++|++++.  ..+..                                              +++|+.|++++|++++.  
T Consensus       251 ~~n~l~~~--~~~~~----------------------------------------------l~~L~~L~l~~n~l~~~--  280 (347)
T 4fmz_A          251 GTNQISDI--NAVKD----------------------------------------------LTKLKMLNVGSNQISDI--  280 (347)
T ss_dssp             CSSCCCCC--GGGTT----------------------------------------------CTTCCEEECCSSCCCCC--
T ss_pred             CCCccCCC--hhHhc----------------------------------------------CCCcCEEEccCCccCCC--
Confidence            98888742  12222                                              34458899999998854  


Q ss_pred             hhhhcccCCCEEecccccccccCCccccccCCCCEEeCCCCcCcccCcccccCCCCCCEEeCcCCccc
Q 046398          624 MELTYLRGLQSLNLSHNIFTGQIPENIGNLISIESLDFSTNQLSSKISQSMSSLSFLNHLNVSNNLLT  691 (794)
Q Consensus       624 ~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~  691 (794)
                      +.+..+++|+.|++++|++++..|+.++.+++|+.|++++|++++..|  +..+++|++|++++|+++
T Consensus       281 ~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          281 SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK  346 (347)
T ss_dssp             GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred             hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence            458889999999999999998888889999999999999999988766  788999999999999875

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.97  E-value=1.5e-30  Score=279.15  Aligned_cols=280  Identities=24%  Similarity=0.332  Sum_probs=181.2

Q ss_pred             CccEEEeecccccccccccccCCCCCCEEEccCCcCcCCCCCCcCCCCCCCEEEccCCcccccCCccccCCCCCCeEecc
Q 046398          304 ALESLVFSSSQISGHLTSQLGQFKSLRTLSLDDNCISGPLPPALGDLSSLTRLDLSRNMLNGSIPLSLGKISHLEYLDLS  383 (794)
Q Consensus       304 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls  383 (794)
                      +|++|++++|.+++..+  +..+++|++|++++|.+++ ++ .+..+++|++|++++|.+.+. +. +..+++|++|+++
T Consensus        67 ~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~-~~-~~~~l~~L~~L~l~~n~i~~~-~~-~~~l~~L~~L~l~  140 (347)
T 4fmz_A           67 NLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITD-IS-ALQNLTNLRELYLNEDNISDI-SP-LANLTKMYSLNLG  140 (347)
T ss_dssp             TCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-CG-GGTTCTTCSEEECTTSCCCCC-GG-GTTCTTCCEEECT
T ss_pred             CccEEEccCCccccchh--hhcCCcCCEEEccCCcccC-ch-HHcCCCcCCEEECcCCcccCc-hh-hccCCceeEEECC
Confidence            34444444444433222  4444444455554444442 11 344444455555555444422 21 4444455555555


Q ss_pred             CcccccccChhhhcCCCCCCEEECcCCcceeEcCCCCcCccccceEecccccCCCCCCcccCCCCCCCEEeccCCCCCCC
Q 046398          384 NNKMNGTLSEIHFVNLTKLTWFSASGNSLILQVNPNWVPPFQLKTLLLMSCHLGPQFPSWLHSQKNLSVLDISNARISDT  463 (794)
Q Consensus       384 ~N~l~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~  463 (794)
                      +|.....++  .+..+++|+.|++++|.+....+  +..+++|++|++++|.+.+..+  +..+++|+.|++++|.+++.
T Consensus       141 ~n~~~~~~~--~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~  214 (347)
T 4fmz_A          141 ANHNLSDLS--PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDI  214 (347)
T ss_dssp             TCTTCCCCG--GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCC
T ss_pred             CCCCccccc--chhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccccccc--ccCCCccceeecccCCCCCC
Confidence            443332222  24444455555555544433222  3444555555555555554332  67788999999999988762


Q ss_pred             cchhHHhccccceeccCcccCCCCCCCEEEccCCcccccCChhhhhcCCCCcEEEcccccccccCCccccCCCCCCEEEc
Q 046398          464 IPRWFWNSIFQLSGIIPESFKNFSNLEVLNLGDNEFVGKIPTWMGEGFTSLLILILRSNKFDGFLPIQLCRLTSLQILDV  543 (794)
Q Consensus       464 ~p~~~~~~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L  543 (794)
                                      +. +..+++|++|++++|+++ .++. + ..+++|++|++++|++++.  ..+..+++|++|++
T Consensus       215 ----------------~~-~~~~~~L~~L~l~~n~l~-~~~~-~-~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l  272 (347)
T 4fmz_A          215 ----------------TP-VANMTRLNSLKIGNNKIT-DLSP-L-ANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNV  272 (347)
T ss_dssp             ----------------GG-GGGCTTCCEEECCSSCCC-CCGG-G-TTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEEC
T ss_pred             ----------------ch-hhcCCcCCEEEccCCccC-CCcc-h-hcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEc
Confidence                            22 667899999999999998 4554 3 3789999999999999864  46889999999999


Q ss_pred             cCCcCcccCCchhhccccccccccccCCCCcccccccccccccceeeEEEEeccchhhcccccceeEEEcCCCccccccC
Q 046398          544 ANNSLSGTMPGCVNNFSAMATIDSSHQSNAMSYFEVTAYDCEVLEDASIVMKGSMVEYNSILNLVRIIDVSKNNFSGEIP  623 (794)
Q Consensus       544 s~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip  623 (794)
                      ++|++++. + .+..                                              ++.|+.|++++|++++..|
T Consensus       273 ~~n~l~~~-~-~~~~----------------------------------------------l~~L~~L~L~~n~l~~~~~  304 (347)
T 4fmz_A          273 GSNQISDI-S-VLNN----------------------------------------------LSQLNSLFLNNNQLGNEDM  304 (347)
T ss_dssp             CSSCCCCC-G-GGGG----------------------------------------------CTTCSEEECCSSCCCGGGH
T ss_pred             cCCccCCC-h-hhcC----------------------------------------------CCCCCEEECcCCcCCCcCh
Confidence            99998753 2 2333                                              3445899999999999999


Q ss_pred             hhhhcccCCCEEecccccccccCCccccccCCCCEEeCCCCcCc
Q 046398          624 MELTYLRGLQSLNLSHNIFTGQIPENIGNLISIESLDFSTNQLS  667 (794)
Q Consensus       624 ~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~  667 (794)
                      ..++.+++|++|++++|++++..|  +..+++|+.|++++|+++
T Consensus       305 ~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          305 EVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK  346 (347)
T ss_dssp             HHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred             hHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence            999999999999999999997655  899999999999999986

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.97  E-value=4e-32  Score=287.73  Aligned_cols=271  Identities=16%  Similarity=0.257  Sum_probs=182.4

Q ss_pred             CCCCHHHHHHHHHHHhcCC-CCCCCCCCC----CCCCCCcceeeeEecC--------CCCcEEEEEcCCCCCccccccch
Q 046398           29 VGCTDSEREALLKLKQDLK-DPSNRLGSW----VVDGDCCKWAEVVCSN--------LTGHVLQLSLRNPFRNDLRYATT   95 (794)
Q Consensus        29 ~~~~~~~~~~ll~~k~~~~-~~~~~~~~W----~~~~~~c~w~gv~c~~--------~~~~v~~L~l~~~~~~~~~~~~~   95 (794)
                      ..+..+|++||++||+++. ++.+...+|    ....++|.|.|+.|..        ...+|+.|+++++          
T Consensus        22 ~~~~~~~~~aLl~~k~~~~~~~~~~~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n----------   91 (328)
T 4fcg_A           22 STALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSV----------   91 (328)
T ss_dssp             -CCCCCHHHHHHHHHHHHHHCCTTHHHHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESS----------
T ss_pred             cccCchHHHHHHHHHHhccCCchhhhhhhcccccccccccccCCcchhhhHHHHhcccccceeEEEccCC----------
Confidence            4567789999999999984 676667889    3467899999999952        2356777777663          


Q ss_pred             hhhhccccccceeecccccCCCCCCEEeCCCCCCCCCCCCcccCCCCCCCEEEcCCCCCCCCCcccccCCccccccccCc
Q 046398           96 EYEDYMRSMLSGNVNPSLVDLKHLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRCLDLSW  175 (794)
Q Consensus        96 ~~~~~~~~~l~g~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~  175 (794)
                              .+. .+|+.+.++++|++|+|++|.++  .+|..++.+++|++|+|++|.++ .+|..++++++|++|++++
T Consensus        92 --------~l~-~lp~~l~~l~~L~~L~L~~n~l~--~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~  159 (328)
T 4fcg_A           92 --------PLP-QFPDQAFRLSHLQHMTIDAAGLM--ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRA  159 (328)
T ss_dssp             --------CCS-SCCSCGGGGTTCSEEEEESSCCC--CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEE
T ss_pred             --------Cch-hcChhhhhCCCCCEEECCCCCcc--chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCC
Confidence                    444 56666777777777777777777  46777777777777777777777 6677777777777777776


Q ss_pred             cccccccccccccccCCCCccCC---------CCCCCEEECcCCCCCCCCCccccCCCCCCeEeeeccCCCCCCCccccC
Q 046398          176 SEYALQVHSFSWLSGQIPNRLGN---------LTSLRHLDLSANKFNSTTAGWLSKFNHLEFLSLSSNGLQGTISSIGLE  246 (794)
Q Consensus       176 ~~~~~~~~~~~~~~~~lp~~l~~---------l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~l~  246 (794)
                      |.          ..+.+|..+..         +++|++|++++|.++ .+|..+.++++|++|++++|.+++ ++. .+.
T Consensus       160 n~----------~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~-~l~  226 (328)
T 4fcg_A          160 CP----------ELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGP-AIH  226 (328)
T ss_dssp             ET----------TCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCG-GGG
T ss_pred             CC----------CccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-Cch-hhc
Confidence            55          33455555443         666666666666665 444555666666666666666552 333 345


Q ss_pred             CCCCCcEEEccCCCCCCCCCchhhhccCCCCEEEccCCCCCcchHHHHHhhhhcCcCCccEEEeecccccccccccccCC
Q 046398          247 NLTSIKTIDLSLNFELGGPIPTSFVRLCELTSIDVSDVKLSQDLSQVLDILSACGASALESLVFSSSQISGHLTSQLGQF  326 (794)
Q Consensus       247 ~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~~l~~l  326 (794)
                      .+++|++|+++ +|.+.+.+|..+..++                             +|++|++++|.+.+.+|..+..+
T Consensus       227 ~l~~L~~L~Ls-~n~~~~~~p~~~~~l~-----------------------------~L~~L~L~~n~~~~~~p~~~~~l  276 (328)
T 4fcg_A          227 HLPKLEELDLR-GCTALRNYPPIFGGRA-----------------------------PLKRLILKDCSNLLTLPLDIHRL  276 (328)
T ss_dssp             GCTTCCEEECT-TCTTCCBCCCCTTCCC-----------------------------CCCEEECTTCTTCCBCCTTGGGC
T ss_pred             cCCCCCEEECc-CCcchhhhHHHhcCCC-----------------------------CCCEEECCCCCchhhcchhhhcC
Confidence            55555555555 3344444444444444                             55666666666666677777778


Q ss_pred             CCCCEEEccCCcCcCCCCCCcCCCCCCCEEEccCCccc
Q 046398          327 KSLRTLSLDDNCISGPLPPALGDLSSLTRLDLSRNMLN  364 (794)
Q Consensus       327 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~  364 (794)
                      ++|++|++++|.+.+.+|..++++++|+.+++..+.+.
T Consensus       277 ~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~  314 (328)
T 4fcg_A          277 TQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA  314 (328)
T ss_dssp             TTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred             CCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence            88888888888888888888888888888888766554

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.97  E-value=2.4e-30  Score=275.46  Aligned_cols=290  Identities=20%  Similarity=0.262  Sum_probs=210.8

Q ss_pred             CCCEEEccCCcCcCCCCCCcCCCCCCCEEEccCCcccccCCccccCCCCCCeEeccCcccccccChhhhcCCCCCCEEEC
Q 046398          328 SLRTLSLDDNCISGPLPPALGDLSSLTRLDLSRNMLNGSIPLSLGKISHLEYLDLSNNKMNGTLSEIHFVNLTKLTWFSA  407 (794)
Q Consensus       328 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~l  407 (794)
                      +++.++++++.++ .+|..+.  ++|++|++++|.+++..|..+..+++|++|++++|++++..+ ..+.++++|+.|++
T Consensus        34 ~l~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L  109 (332)
T 2ft3_A           34 HLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHE-KAFSPLRKLQKLYI  109 (332)
T ss_dssp             ETTEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECG-GGSTTCTTCCEEEC
T ss_pred             cCCEEECCCCCcc-ccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCH-hHhhCcCCCCEEEC
Confidence            4555666555555 3444332  455666666666554445555566666666666666553222 24555666666666


Q ss_pred             cCCcceeEcCCCCcCccccceEecccccCCCCCCcccCCCCCCCEEeccCCCCCCCcchhHHhccccceeccCcccCCCC
Q 046398          408 SGNSLILQVNPNWVPPFQLKTLLLMSCHLGPQFPSWLHSQKNLSVLDISNARISDTIPRWFWNSIFQLSGIIPESFKNFS  487 (794)
Q Consensus       408 s~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~l~~~~p~~l~~l~  487 (794)
                      ++|.+.. ++..+.  ++|++|++++|.+....+..+..+++|++|++++|.++..             +..|..+..+ 
T Consensus       110 ~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~-------------~~~~~~~~~l-  172 (332)
T 2ft3_A          110 SKNHLVE-IPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENS-------------GFEPGAFDGL-  172 (332)
T ss_dssp             CSSCCCS-CCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGG-------------GSCTTSSCSC-
T ss_pred             CCCcCCc-cCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccC-------------CCCcccccCC-
Confidence            6665542 222222  5777788888877777777788899999999999988631             2345667677 


Q ss_pred             CCCEEEccCCcccccCChhhhhcCCCCcEEEcccccccccCCccccCCCCCCEEEccCCcCcccCCchhhcccccccccc
Q 046398          488 NLEVLNLGDNEFVGKIPTWMGEGFTSLLILILRSNKFDGFLPIQLCRLTSLQILDVANNSLSGTMPGCVNNFSAMATIDS  567 (794)
Q Consensus       488 ~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~  567 (794)
                      +|++|++++|+++ .+|..+.   ++|+.|++++|++++..+..+..+++|++|++++|++++..+..+..+++|     
T Consensus       173 ~L~~L~l~~n~l~-~l~~~~~---~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L-----  243 (332)
T 2ft3_A          173 KLNYLRISEAKLT-GIPKDLP---ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTL-----  243 (332)
T ss_dssp             CCSCCBCCSSBCS-SCCSSSC---SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTC-----
T ss_pred             ccCEEECcCCCCC-ccCcccc---CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCC-----
Confidence            8999999999998 5777543   789999999999998888899999999999999999988777666655544     


Q ss_pred             ccCCCCcccccccccccccceeeEEEEeccchhhcccccceeEEEcCCCccccccChhhhcccCCCEEecccccccccCC
Q 046398          568 SHQSNAMSYFEVTAYDCEVLEDASIVMKGSMVEYNSILNLVRIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQIP  647 (794)
Q Consensus       568 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip  647 (794)
                                                               +.|++++|+++ .+|..+..+++|+.|++++|++++..+
T Consensus       244 -----------------------------------------~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~  281 (332)
T 2ft3_A          244 -----------------------------------------RELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGV  281 (332)
T ss_dssp             -----------------------------------------CEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCT
T ss_pred             -----------------------------------------CEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccCh
Confidence                                                     88999999998 788889999999999999999997666


Q ss_pred             ccccc------cCCCCEEeCCCCcCc--ccCcccccCCCCCCEEeCcCCc
Q 046398          648 ENIGN------LISIESLDFSTNQLS--SKISQSMSSLSFLNHLNVSNNL  689 (794)
Q Consensus       648 ~~l~~------l~~L~~L~Ls~N~l~--~~~p~~l~~l~~L~~L~ls~N~  689 (794)
                      ..|..      ..+|+.|++++|++.  +..|..+..++.|+.+++++|+
T Consensus       282 ~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~  331 (332)
T 2ft3_A          282 NDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK  331 (332)
T ss_dssp             TSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred             hHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence            66655      367899999999998  6778889999999999999885

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.97  E-value=7.3e-30  Score=271.54  Aligned_cols=291  Identities=20%  Similarity=0.237  Sum_probs=206.7

Q ss_pred             CccEEEeecccccccccccccCCCCCCEEEccCCcCcCCCCCCcCCCCCCCEEEccCCcccccCCccccCCCCCCeEecc
Q 046398          304 ALESLVFSSSQISGHLTSQLGQFKSLRTLSLDDNCISGPLPPALGDLSSLTRLDLSRNMLNGSIPLSLGKISHLEYLDLS  383 (794)
Q Consensus       304 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls  383 (794)
                      +++.++++++.++. +|..+  .++++.|++++|.+++..+..+.++++|++|++++|.+++..|..++.+++|++|+++
T Consensus        32 ~l~~l~~~~~~l~~-lp~~~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls  108 (330)
T 1xku_A           32 HLRVVQCSDLGLEK-VPKDL--PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS  108 (330)
T ss_dssp             ETTEEECTTSCCCS-CCCSC--CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             CCeEEEecCCCccc-cCccC--CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence            56666666666653 33322  2466666666666665555556666666666666666665556666666666666666


Q ss_pred             CcccccccChhhhcCCCCCCEEECcCCcceeEcCCCCcCccccceEecccccCCCCCCcccCCCCCCCEEeccCCCCCCC
Q 046398          384 NNKMNGTLSEIHFVNLTKLTWFSASGNSLILQVNPNWVPPFQLKTLLLMSCHLGPQFPSWLHSQKNLSVLDISNARISDT  463 (794)
Q Consensus       384 ~N~l~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~  463 (794)
                      +|+++ .++.                         .+.  ++|++|++++|.+.+..+..+..+++|++|++++|++...
T Consensus       109 ~n~l~-~l~~-------------------------~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~  160 (330)
T 1xku_A          109 KNQLK-ELPE-------------------------KMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSS  160 (330)
T ss_dssp             SSCCS-BCCS-------------------------SCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGG
T ss_pred             CCcCC-ccCh-------------------------hhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCcc
Confidence            66665 3332                         111  3566666666666666666778888899999998887631


Q ss_pred             cchhHHhccccceeccCcccCCCCCCCEEEccCCcccccCChhhhhcCCCCcEEEcccccccccCCccccCCCCCCEEEc
Q 046398          464 IPRWFWNSIFQLSGIIPESFKNFSNLEVLNLGDNEFVGKIPTWMGEGFTSLLILILRSNKFDGFLPIQLCRLTSLQILDV  543 (794)
Q Consensus       464 ~p~~~~~~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L  543 (794)
                                   +..+..+..+++|++|++++|+++ .+|..+   .++|+.|++++|++++..|..+..+++|++|++
T Consensus       161 -------------~~~~~~~~~l~~L~~L~l~~n~l~-~l~~~~---~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L  223 (330)
T 1xku_A          161 -------------GIENGAFQGMKKLSYIRIADTNIT-TIPQGL---PPSLTELHLDGNKITKVDAASLKGLNNLAKLGL  223 (330)
T ss_dssp             -------------GBCTTGGGGCTTCCEEECCSSCCC-SCCSSC---CTTCSEEECTTSCCCEECTGGGTTCTTCCEEEC
T ss_pred             -------------CcChhhccCCCCcCEEECCCCccc-cCCccc---cccCCEEECCCCcCCccCHHHhcCCCCCCEEEC
Confidence                         235567778889999999999887 677654   378899999999988888888888999999999


Q ss_pred             cCCcCcccCCchhhccccccccccccCCCCcccccccccccccceeeEEEEeccchhhcccccceeEEEcCCCccccccC
Q 046398          544 ANNSLSGTMPGCVNNFSAMATIDSSHQSNAMSYFEVTAYDCEVLEDASIVMKGSMVEYNSILNLVRIIDVSKNNFSGEIP  623 (794)
Q Consensus       544 s~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip  623 (794)
                      ++|++++..+..+..+++|                                              +.|++++|+++ .+|
T Consensus       224 s~n~l~~~~~~~~~~l~~L----------------------------------------------~~L~L~~N~l~-~lp  256 (330)
T 1xku_A          224 SFNSISAVDNGSLANTPHL----------------------------------------------RELHLNNNKLV-KVP  256 (330)
T ss_dssp             CSSCCCEECTTTGGGSTTC----------------------------------------------CEEECCSSCCS-SCC
T ss_pred             CCCcCceeChhhccCCCCC----------------------------------------------CEEECCCCcCc-cCC
Confidence            9998887766666554444                                              78888888888 788


Q ss_pred             hhhhcccCCCEEecccccccccCCccccc------cCCCCEEeCCCCcCcc--cCcccccCCCCCCEEeCcCCc
Q 046398          624 MELTYLRGLQSLNLSHNIFTGQIPENIGN------LISIESLDFSTNQLSS--KISQSMSSLSFLNHLNVSNNL  689 (794)
Q Consensus       624 ~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~------l~~L~~L~Ls~N~l~~--~~p~~l~~l~~L~~L~ls~N~  689 (794)
                      ..+..+++|++|++++|++++..+..|..      .+.|+.|++++|++..  ..|..+..+..++.+++++|+
T Consensus       257 ~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~  330 (330)
T 1xku_A          257 GGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK  330 (330)
T ss_dssp             TTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred             hhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence            88888889999999999988665666643      3778888999988864  566778888888888888874

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.97  E-value=1.6e-32  Score=306.73  Aligned_cols=371  Identities=19%  Similarity=0.180  Sum_probs=167.7

Q ss_pred             CCCCeEeeeccCCCCCCCccccCCCCCCcEEEccCCCCCCC----CCchhhhccCCCCEEEccCCCCCcchHHHHHhhhh
Q 046398          224 NHLEFLSLSSNGLQGTISSIGLENLTSIKTIDLSLNFELGG----PIPTSFVRLCELTSIDVSDVKLSQDLSQVLDILSA  299 (794)
Q Consensus       224 ~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~~~~~~~----~~~~~l~~l~~L~~L~l~~~~l~~~~~~~l~~l~~  299 (794)
                      ++|++|++++|.++.......+..+++|++|+++ ++.+++    .++..+..+++|+.|++++|.+.+..+..+...-.
T Consensus         3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~   81 (461)
T 1z7x_W            3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLD-DCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQ   81 (461)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEE-SSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTC
T ss_pred             ccceehhhhhcccCchhHHHHHhhcCCccEEEcc-CCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHh
Confidence            4566777777766533222124455666666666 333332    23344555556666666665555433333222110


Q ss_pred             cCcCCccEEEeecccccc----cccccccCCCCCCEEEccCCcCcCCCCCCc-----CCCCCCCEEEccCCccccc----
Q 046398          300 CGASALESLVFSSSQISG----HLTSQLGQFKSLRTLSLDDNCISGPLPPAL-----GDLSSLTRLDLSRNMLNGS----  366 (794)
Q Consensus       300 ~~~~~L~~L~L~~n~l~~----~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l-----~~l~~L~~L~Ls~n~l~~~----  366 (794)
                      ...++|++|++++|.++.    .++..+..+++|++|++++|.+++..+..+     ...++|++|++++|.+++.    
T Consensus        82 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~  161 (461)
T 1z7x_W           82 TPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEP  161 (461)
T ss_dssp             STTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHH
T ss_pred             hCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHH
Confidence            011135555555555542    234444455555555555554442211111     1123455555555544432    


Q ss_pred             CCccccCCCCCCeEeccCcccccccChhhhcC-CCCCCEEECcCCcceeEcCCCCcCccccceEecccccCCCC----CC
Q 046398          367 IPLSLGKISHLEYLDLSNNKMNGTLSEIHFVN-LTKLTWFSASGNSLILQVNPNWVPPFQLKTLLLMSCHLGPQ----FP  441 (794)
Q Consensus       367 ~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~-l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~----~~  441 (794)
                      ++..+..+++|++|++++|.+.+.... .+.. +.                    ...++|++|++++|.++..    ++
T Consensus       162 l~~~l~~~~~L~~L~L~~n~i~~~~~~-~l~~~l~--------------------~~~~~L~~L~L~~n~l~~~~~~~l~  220 (461)
T 1z7x_W          162 LASVLRAKPDFKELTVSNNDINEAGVR-VLCQGLK--------------------DSPCQLEALKLESCGVTSDNCRDLC  220 (461)
T ss_dssp             HHHHHHHCTTCCEEECCSSBCHHHHHH-HHHHHHH--------------------HSCCCCCEEECTTSCCBTTHHHHHH
T ss_pred             HHHHHhhCCCCCEEECcCCCcchHHHH-HHHHHHh--------------------cCCCCceEEEccCCCCcHHHHHHHH
Confidence            122333344444444444444321111 1100 00                    0112344444444444332    34


Q ss_pred             cccCCCCCCCEEeccCCCCCCCcchhHHhccccceeccCcccCCCCCCCEEEccCCccccc----CChhhhhcCCCCcEE
Q 046398          442 SWLHSQKNLSVLDISNARISDTIPRWFWNSIFQLSGIIPESFKNFSNLEVLNLGDNEFVGK----IPTWMGEGFTSLLIL  517 (794)
Q Consensus       442 ~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~----ip~~~~~~l~~L~~L  517 (794)
                      ..+..+++|++|++++|++++.....+          .+..+..+++|++|++++|++++.    ++..+. .+++|++|
T Consensus       221 ~~l~~~~~L~~L~Ls~n~l~~~~~~~l----------~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~-~~~~L~~L  289 (461)
T 1z7x_W          221 GIVASKASLRELALGSNKLGDVGMAEL----------CPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLR-AKESLKEL  289 (461)
T ss_dssp             HHHHHCTTCCEEECCSSBCHHHHHHHH----------HHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHH-HCTTCCEE
T ss_pred             HHHHhCCCccEEeccCCcCChHHHHHH----------HHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHh-hCCCcceE
Confidence            444555666666666665543211100          011122455666666666666532    333333 35666666


Q ss_pred             EcccccccccCCcccc-----CCCCCCEEEccCCcCcccCCchhhccccccccccccCCCCcccccccccccccceeeEE
Q 046398          518 ILRSNKFDGFLPIQLC-----RLTSLQILDVANNSLSGTMPGCVNNFSAMATIDSSHQSNAMSYFEVTAYDCEVLEDASI  592 (794)
Q Consensus       518 ~L~~n~l~~~~p~~~~-----~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~  592 (794)
                      ++++|++++..+..+.     ..++|++|++++|.+++.....+.                                   
T Consensus       290 ~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~-----------------------------------  334 (461)
T 1z7x_W          290 SLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFS-----------------------------------  334 (461)
T ss_dssp             ECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHH-----------------------------------
T ss_pred             ECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHH-----------------------------------
Confidence            6666665543322222     124666666666665533111100                                   


Q ss_pred             EEeccchhhcccccceeEEEcCCCccccccChhhhc-----ccCCCEEecccccccc----cCCccccccCCCCEEeCCC
Q 046398          593 VMKGSMVEYNSILNLVRIIDVSKNNFSGEIPMELTY-----LRGLQSLNLSHNIFTG----QIPENIGNLISIESLDFST  663 (794)
Q Consensus       593 ~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~-----l~~L~~L~Ls~N~l~~----~ip~~l~~l~~L~~L~Ls~  663 (794)
                             .....++.|+.||+++|++++..+..+..     .++|++|+|++|++++    .+|..+..+++|+.|++++
T Consensus       335 -------~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~  407 (461)
T 1z7x_W          335 -------SVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSN  407 (461)
T ss_dssp             -------HHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCS
T ss_pred             -------HHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCC
Confidence                   00111233356666666665544444432     4466666666666654    5555566666666666666


Q ss_pred             CcCccc
Q 046398          664 NQLSSK  669 (794)
Q Consensus       664 N~l~~~  669 (794)
                      |++++.
T Consensus       408 N~i~~~  413 (461)
T 1z7x_W          408 NCLGDA  413 (461)
T ss_dssp             SSCCHH
T ss_pred             CCCCHH
Confidence            666543

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.97  E-value=2.1e-29  Score=268.20  Aligned_cols=290  Identities=22%  Similarity=0.269  Sum_probs=159.6

Q ss_pred             CCCEEEccCCCCCcchHHHHHhhhhcCcCCccEEEeecccccccccccccCCCCCCEEEccCCcCcCCCCCCcCCCCCCC
Q 046398          275 ELTSIDVSDVKLSQDLSQVLDILSACGASALESLVFSSSQISGHLTSQLGQFKSLRTLSLDDNCISGPLPPALGDLSSLT  354 (794)
Q Consensus       275 ~L~~L~l~~~~l~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~  354 (794)
                      +++.++++++.++. +|..+       .+++++|++++|.+++..+..+..+++|++|++++|.+++..|..+.++++|+
T Consensus        34 ~l~~l~~~~~~l~~-ip~~~-------~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  105 (332)
T 2ft3_A           34 HLRVVQCSDLGLKA-VPKEI-------SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQ  105 (332)
T ss_dssp             ETTEEECCSSCCSS-CCSCC-------CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCC
T ss_pred             cCCEEECCCCCccc-cCCCC-------CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCC
Confidence            57777777776653 22211       12677777777777766666677777777777777777766666677777777


Q ss_pred             EEEccCCcccccCCccccCCCCCCeEeccCcccccccChhhhcCCCCCCEEECcCCcceeEcCCCCcCccccceEecccc
Q 046398          355 RLDLSRNMLNGSIPLSLGKISHLEYLDLSNNKMNGTLSEIHFVNLTKLTWFSASGNSLILQVNPNWVPPFQLKTLLLMSC  434 (794)
Q Consensus       355 ~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n  434 (794)
                      +|++++|.++ .+|..+.  ++|++|++++|++. .++...+..+++|+.|++++|.+...                   
T Consensus       106 ~L~L~~n~l~-~l~~~~~--~~L~~L~l~~n~i~-~~~~~~~~~l~~L~~L~l~~n~l~~~-------------------  162 (332)
T 2ft3_A          106 KLYISKNHLV-EIPPNLP--SSLVELRIHDNRIR-KVPKGVFSGLRNMNCIEMGGNPLENS-------------------  162 (332)
T ss_dssp             EEECCSSCCC-SCCSSCC--TTCCEEECCSSCCC-CCCSGGGSSCSSCCEEECCSCCCBGG-------------------
T ss_pred             EEECCCCcCC-ccCcccc--ccCCEEECCCCccC-ccCHhHhCCCccCCEEECCCCccccC-------------------
Confidence            7777777776 4554443  66777777777776 44444566667777777776665420                   


Q ss_pred             cCCCCCCcccCCCCCCCEEeccCCCCCCCcchhHHhccccceeccCcccCCCCCCCEEEccCCcccccCChhhhhcCCCC
Q 046398          435 HLGPQFPSWLHSQKNLSVLDISNARISDTIPRWFWNSIFQLSGIIPESFKNFSNLEVLNLGDNEFVGKIPTWMGEGFTSL  514 (794)
Q Consensus       435 ~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L  514 (794)
                         +..+..+..+ +|++|++++|++++                +|..+.  ++|++|++++|++++..+..+. .+++|
T Consensus       163 ---~~~~~~~~~l-~L~~L~l~~n~l~~----------------l~~~~~--~~L~~L~l~~n~i~~~~~~~l~-~l~~L  219 (332)
T 2ft3_A          163 ---GFEPGAFDGL-KLNYLRISEAKLTG----------------IPKDLP--ETLNELHLDHNKIQAIELEDLL-RYSKL  219 (332)
T ss_dssp             ---GSCTTSSCSC-CCSCCBCCSSBCSS----------------CCSSSC--SSCSCCBCCSSCCCCCCTTSST-TCTTC
T ss_pred             ---CCCcccccCC-ccCEEECcCCCCCc----------------cCcccc--CCCCEEECCCCcCCccCHHHhc-CCCCC
Confidence               1223333333 44555555554443                222221  3455555555555432223332 34555


Q ss_pred             cEEEcccccccccCCccccCCCCCCEEEccCCcCcccCCchhhccccccccccccCCCCcccccccccccccceeeEEEE
Q 046398          515 LILILRSNKFDGFLPIQLCRLTSLQILDVANNSLSGTMPGCVNNFSAMATIDSSHQSNAMSYFEVTAYDCEVLEDASIVM  594 (794)
Q Consensus       515 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  594 (794)
                      +.|++++|++++..+..+..+++|++|++++|+++ .+|..+..+++|                                
T Consensus       220 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L--------------------------------  266 (332)
T 2ft3_A          220 YRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLL--------------------------------  266 (332)
T ss_dssp             SCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTC--------------------------------
T ss_pred             CEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccC--------------------------------
Confidence            55555555555444444555555555555555554 344333332222                                


Q ss_pred             eccchhhcccccceeEEEcCCCccccccChhhhc------ccCCCEEeccccccc--ccCCccccccCCCCEEeCCCCc
Q 046398          595 KGSMVEYNSILNLVRIIDVSKNNFSGEIPMELTY------LRGLQSLNLSHNIFT--GQIPENIGNLISIESLDFSTNQ  665 (794)
Q Consensus       595 ~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~------l~~L~~L~Ls~N~l~--~~ip~~l~~l~~L~~L~Ls~N~  665 (794)
                                    +.|++++|++++..+..+..      ...|+.|++++|.+.  +..|..|..+++|+.+++++|+
T Consensus       267 --------------~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~  331 (332)
T 2ft3_A          267 --------------QVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK  331 (332)
T ss_dssp             --------------CEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred             --------------CEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence                          45555555555443333332      245666777777665  4555666777777777777664

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.97  E-value=2.7e-32  Score=304.93  Aligned_cols=367  Identities=19%  Similarity=0.150  Sum_probs=229.0

Q ss_pred             CCCcEEEccCCCCCCCCCch-hhhccCCCCEEEccCCCCCcchHHHHHhhhhcCcCCccEEEeecccccccccccc-cCC
Q 046398          249 TSIKTIDLSLNFELGGPIPT-SFVRLCELTSIDVSDVKLSQDLSQVLDILSACGASALESLVFSSSQISGHLTSQL-GQF  326 (794)
Q Consensus       249 ~~L~~L~L~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~~l-~~l  326 (794)
                      ++|++|+++ ++.++..... .+..+++|+.|++++|.+++.....+... ...+++|++|++++|.+++..+..+ ..+
T Consensus         3 ~~l~~L~Ls-~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~-l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l   80 (461)
T 1z7x_W            3 LDIQSLDIQ-CEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSA-LRVNPALAELNLRSNELGDVGVHCVLQGL   80 (461)
T ss_dssp             EEEEEEEEE-SCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHH-HHTCTTCCEEECTTCCCHHHHHHHHHHTT
T ss_pred             ccceehhhh-hcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHH-HHhCCCcCEEeCCCCcCChHHHHHHHHHH
Confidence            456666776 3344332222 25566666666666666654322221111 0012256666666666554333222 123


Q ss_pred             C----CCCEEEccCCcCcC----CCCCCcCCCCCCCEEEccCCcccccCCcccc-----CCCCCCeEeccCcccccccC-
Q 046398          327 K----SLRTLSLDDNCISG----PLPPALGDLSSLTRLDLSRNMLNGSIPLSLG-----KISHLEYLDLSNNKMNGTLS-  392 (794)
Q Consensus       327 ~----~L~~L~L~~n~l~~----~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~-----~l~~L~~L~Ls~N~l~~~~~-  392 (794)
                      +    +|++|++++|.++.    .++..+..+++|++|++++|.+++..+..+.     ..++|++|++++|.+++... 
T Consensus        81 ~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~  160 (461)
T 1z7x_W           81 QTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCE  160 (461)
T ss_dssp             CSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHH
T ss_pred             hhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHH
Confidence            3    46666666666553    2344555556666666666655433222221     13456666666665543211 


Q ss_pred             --hhhhcCCCCCCEEECcCCcceeEcCCCCcCccccceEecccccCCCCCCcccC-----CCCCCCEEeccCCCCCCCcc
Q 046398          393 --EIHFVNLTKLTWFSASGNSLILQVNPNWVPPFQLKTLLLMSCHLGPQFPSWLH-----SQKNLSVLDISNARISDTIP  465 (794)
Q Consensus       393 --~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~-----~l~~L~~L~Ls~n~l~~~~p  465 (794)
                        ...+..+++|+.|++++|.                        ++...+..+.     ..++|++|++++|.+++...
T Consensus       161 ~l~~~l~~~~~L~~L~L~~n~------------------------i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~  216 (461)
T 1z7x_W          161 PLASVLRAKPDFKELTVSNND------------------------INEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNC  216 (461)
T ss_dssp             HHHHHHHHCTTCCEEECCSSB------------------------CHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHH
T ss_pred             HHHHHHhhCCCCCEEECcCCC------------------------cchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHH
Confidence              1123344555555555544                        3322222221     35689999999998876311


Q ss_pred             hhHHhccccceeccCcccCCCCCCCEEEccCCcccccCC----hhhhhcCCCCcEEEccccccccc----CCccccCCCC
Q 046398          466 RWFWNSIFQLSGIIPESFKNFSNLEVLNLGDNEFVGKIP----TWMGEGFTSLLILILRSNKFDGF----LPIQLCRLTS  537 (794)
Q Consensus       466 ~~~~~~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip----~~~~~~l~~L~~L~L~~n~l~~~----~p~~~~~l~~  537 (794)
                      .           .++..+..+++|++|++++|++++...    ..+...+++|+.|++++|++++.    ++..+..+++
T Consensus       217 ~-----------~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~  285 (461)
T 1z7x_W          217 R-----------DLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKES  285 (461)
T ss_dssp             H-----------HHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTT
T ss_pred             H-----------HHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCC
Confidence            1           134556678899999999998875422    22222478999999999998864    5667777899


Q ss_pred             CCEEEccCCcCcccCCchhhccccccccccccCCCCcccccccccccccceeeEEEEeccchhhcccccceeEEEcCCCc
Q 046398          538 LQILDVANNSLSGTMPGCVNNFSAMATIDSSHQSNAMSYFEVTAYDCEVLEDASIVMKGSMVEYNSILNLVRIIDVSKNN  617 (794)
Q Consensus       538 L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~  617 (794)
                      |++|++++|.+.+..+..+...-                                         ....+.|+.|++++|.
T Consensus       286 L~~L~Ls~n~i~~~~~~~l~~~l-----------------------------------------~~~~~~L~~L~L~~n~  324 (461)
T 1z7x_W          286 LKELSLAGNELGDEGARLLCETL-----------------------------------------LEPGCQLESLWVKSCS  324 (461)
T ss_dssp             CCEEECTTCCCHHHHHHHHHHHH-----------------------------------------TSTTCCCCEEECTTSC
T ss_pred             cceEECCCCCCchHHHHHHHHHh-----------------------------------------ccCCccceeeEcCCCC
Confidence            99999999988754433332110                                         0112467999999999


Q ss_pred             cccc----cChhhhcccCCCEEecccccccccCCccccc-----cCCCCEEeCCCCcCcc----cCcccccCCCCCCEEe
Q 046398          618 FSGE----IPMELTYLRGLQSLNLSHNIFTGQIPENIGN-----LISIESLDFSTNQLSS----KISQSMSSLSFLNHLN  684 (794)
Q Consensus       618 l~~~----ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~-----l~~L~~L~Ls~N~l~~----~~p~~l~~l~~L~~L~  684 (794)
                      +++.    ++..+..+++|++|+|++|++++..+..+..     .++|+.|+|++|++++    .+|..+..+++|++|+
T Consensus       325 l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~  404 (461)
T 1z7x_W          325 FTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELD  404 (461)
T ss_dssp             CBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEE
T ss_pred             CchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEE
Confidence            9876    5777888899999999999999776665554     6799999999999997    7899999999999999


Q ss_pred             CcCCccccc
Q 046398          685 VSNNLLTGK  693 (794)
Q Consensus       685 ls~N~l~g~  693 (794)
                      +++|++++.
T Consensus       405 l~~N~i~~~  413 (461)
T 1z7x_W          405 LSNNCLGDA  413 (461)
T ss_dssp             CCSSSCCHH
T ss_pred             CCCCCCCHH
Confidence            999999865

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.96  E-value=6.4e-29  Score=264.25  Aligned_cols=290  Identities=21%  Similarity=0.262  Sum_probs=185.6

Q ss_pred             CCCCEEEccCCCCCcchHHHHHhhhhcCcCCccEEEeecccccccccccccCCCCCCEEEccCCcCcCCCCCCcCCCCCC
Q 046398          274 CELTSIDVSDVKLSQDLSQVLDILSACGASALESLVFSSSQISGHLTSQLGQFKSLRTLSLDDNCISGPLPPALGDLSSL  353 (794)
Q Consensus       274 ~~L~~L~l~~~~l~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L  353 (794)
                      .+++.++++++.++.. |..+       .+.+++|++++|.+++..+..+..+++|++|++++|.+++..|..+.++++|
T Consensus        31 c~l~~l~~~~~~l~~l-p~~~-------~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  102 (330)
T 1xku_A           31 CHLRVVQCSDLGLEKV-PKDL-------PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKL  102 (330)
T ss_dssp             EETTEEECTTSCCCSC-CCSC-------CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTC
T ss_pred             CCCeEEEecCCCcccc-CccC-------CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCC
Confidence            4789999999888743 2221       2389999999999999888899999999999999999998889999999999


Q ss_pred             CEEEccCCcccccCCccccCCCCCCeEeccCcccccccChhhhcCCCCCCEEECcCCccee--EcCCCCcCccccceEec
Q 046398          354 TRLDLSRNMLNGSIPLSLGKISHLEYLDLSNNKMNGTLSEIHFVNLTKLTWFSASGNSLIL--QVNPNWVPPFQLKTLLL  431 (794)
Q Consensus       354 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~ls~n~l~~--~~~~~~~~~~~L~~L~L  431 (794)
                      ++|++++|.++ .+|..+.  ++|++|++++|.+. .++...+.++++|+.|++++|.+..  ..+..+..+++|++|++
T Consensus       103 ~~L~Ls~n~l~-~l~~~~~--~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l  178 (330)
T 1xku_A          103 ERLYLSKNQLK-ELPEKMP--KTLQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRI  178 (330)
T ss_dssp             CEEECCSSCCS-BCCSSCC--TTCCEEECCSSCCC-BBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEEC
T ss_pred             CEEECCCCcCC-ccChhhc--ccccEEECCCCccc-ccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEEC
Confidence            99999999998 5666554  79999999999998 5666678999999999999998753  33333444444555555


Q ss_pred             ccccCCCCCCcccCCCCCCCEEeccCCCCCCCcchhHHhccccceeccCcccCCCCCCCEEEccCCcccccCChhhhhcC
Q 046398          432 MSCHLGPQFPSWLHSQKNLSVLDISNARISDTIPRWFWNSIFQLSGIIPESFKNFSNLEVLNLGDNEFVGKIPTWMGEGF  511 (794)
Q Consensus       432 ~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l  511 (794)
                      ++|.++. +|.                                       .+.  ++|++|++++|++++..|..+. .+
T Consensus       179 ~~n~l~~-l~~---------------------------------------~~~--~~L~~L~l~~n~l~~~~~~~~~-~l  215 (330)
T 1xku_A          179 ADTNITT-IPQ---------------------------------------GLP--PSLTELHLDGNKITKVDAASLK-GL  215 (330)
T ss_dssp             CSSCCCS-CCS---------------------------------------SCC--TTCSEEECTTSCCCEECTGGGT-TC
T ss_pred             CCCcccc-CCc---------------------------------------ccc--ccCCEEECCCCcCCccCHHHhc-CC
Confidence            4444442 222                                       221  4455555555555433333332 34


Q ss_pred             CCCcEEEcccccccccCCccccCCCCCCEEEccCCcCcccCCchhhccccccccccccCCCCcccccccccccccceeeE
Q 046398          512 TSLLILILRSNKFDGFLPIQLCRLTSLQILDVANNSLSGTMPGCVNNFSAMATIDSSHQSNAMSYFEVTAYDCEVLEDAS  591 (794)
Q Consensus       512 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~  591 (794)
                      ++|+.|++++|++++..+..+..+++|++|++++|+++ .+|..+..+++|                             
T Consensus       216 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L-----------------------------  265 (330)
T 1xku_A          216 NNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYI-----------------------------  265 (330)
T ss_dssp             TTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSC-----------------------------
T ss_pred             CCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCc-----------------------------
Confidence            55555555555555444444445555555555555544 333333322222                             


Q ss_pred             EEEeccchhhcccccceeEEEcCCCccccccChhhhc------ccCCCEEecccccccc--cCCccccccCCCCEEeCCC
Q 046398          592 IVMKGSMVEYNSILNLVRIIDVSKNNFSGEIPMELTY------LRGLQSLNLSHNIFTG--QIPENIGNLISIESLDFST  663 (794)
Q Consensus       592 ~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~------l~~L~~L~Ls~N~l~~--~ip~~l~~l~~L~~L~Ls~  663 (794)
                                       ++|++++|++++..+..+..      ...|+.|++++|.+..  ..|..|..+.+++.++|++
T Consensus       266 -----------------~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~  328 (330)
T 1xku_A          266 -----------------QVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGN  328 (330)
T ss_dssp             -----------------CEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC--
T ss_pred             -----------------CEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEecc
Confidence                             44555555554433333322      2556667777776642  3455666677777777777


Q ss_pred             Cc
Q 046398          664 NQ  665 (794)
Q Consensus       664 N~  665 (794)
                      |+
T Consensus       329 N~  330 (330)
T 1xku_A          329 YK  330 (330)
T ss_dssp             --
T ss_pred             cC
Confidence            64

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.96  E-value=2.8e-31  Score=306.53  Aligned_cols=435  Identities=15%  Similarity=0.105  Sum_probs=236.9

Q ss_pred             ecccccCCCCCCEEeCCCCCCC---CCCCCcccC------------CCCCCCEEEcCCCCCCCCCcccccCC--cccccc
Q 046398          109 VNPSLVDLKHLTHLDLSGNDFQ---GIRIPKYLG------------SLKNLRYLNLSGAEFAGIIPHQLGNL--SNLRCL  171 (794)
Q Consensus       109 ~~~~l~~l~~L~~L~Ls~n~l~---~~~~p~~~~------------~l~~L~~L~Ls~n~l~~~~p~~l~~l--~~L~~L  171 (794)
                      ++..+.++++|++|+|+++...   + .+|..++            .+++|++|+|++|.+++..+..+...  .+|++|
T Consensus        65 ~~~~~~~~~~L~~L~L~~~~~~~~~~-~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L  143 (592)
T 3ogk_B           65 PDRLSRRFPNLRSLKLKGKPRAAMFN-LIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETL  143 (592)
T ss_dssp             HHHHHHHCTTCSEEEEECSCGGGGGT-CSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEE
T ss_pred             hHHHHHhCCCCeEEEecCCcchhhcc-cccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEE
Confidence            3445678899999999886321   1 1333333            68899999999998887666666663  348888


Q ss_pred             ccCccccccccccccccccCCCCccCCCCCCCEEECcCCCCCCCCCc----cccCCCCCCeEeeeccCCCCCCCccccCC
Q 046398          172 DLSWSEYALQVHSFSWLSGQIPNRLGNLTSLRHLDLSANKFNSTTAG----WLSKFNHLEFLSLSSNGLQGTISSIGLEN  247 (794)
Q Consensus       172 ~Ls~~~~~~~~~~~~~~~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~~----~l~~l~~L~~L~L~~n~l~~~i~~~~l~~  247 (794)
                      ++++|...        ....++....++++|++|+|++|.+++....    ....+++|++|++++|.+++.-.      
T Consensus       144 ~L~~~~~~--------~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~------  209 (592)
T 3ogk_B          144 KLDKCSGF--------TTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISP------  209 (592)
T ss_dssp             EEESCEEE--------EHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCH------
T ss_pred             ECcCCCCc--------CHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCH------
Confidence            88776521        0111222334567777888777776555322    23445556666555555431100      


Q ss_pred             CCCCcEEEccCCCCCCCCCchhhhccCCCCEEEccCCCCCcchHHHHHhhhhcCcCCccEEEeeccccc---cccccccc
Q 046398          248 LTSIKTIDLSLNFELGGPIPTSFVRLCELTSIDVSDVKLSQDLSQVLDILSACGASALESLVFSSSQIS---GHLTSQLG  324 (794)
Q Consensus       248 l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~---~~~~~~l~  324 (794)
                                      +.++..+.++++|+.|++++|.+.+ ++..+..++     +|++|+++.....   ...+..+.
T Consensus       210 ----------------~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~-----~L~~L~l~~~~~~~~~~~~~~~l~  267 (592)
T 3ogk_B          210 ----------------KDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAA-----NLEEFCGGSLNEDIGMPEKYMNLV  267 (592)
T ss_dssp             ----------------HHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCT-----TCCEEEECBCCCCTTCTTSSSCCC
T ss_pred             ----------------HHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhh-----HHHhhcccccccccchHHHHHHhh
Confidence                            1122334445555555555554443 333333333     4455544432111   11222334


Q ss_pred             CCCCCCEEEccCCcCcCCCCCCcCCCCCCCEEEccCCcccccCCccccCCCCCCeEeccCcccccccChhhhcCCCCCCE
Q 046398          325 QFKSLRTLSLDDNCISGPLPPALGDLSSLTRLDLSRNMLNGSIPLSLGKISHLEYLDLSNNKMNGTLSEIHFVNLTKLTW  404 (794)
Q Consensus       325 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~  404 (794)
                      .+++|+.|+++++..                         +.+|..+..+++|++|++++|.+.+......+..+++|+.
T Consensus       268 ~~~~L~~L~l~~~~~-------------------------~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~  322 (592)
T 3ogk_B          268 FPRKLCRLGLSYMGP-------------------------NEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEV  322 (592)
T ss_dssp             CCTTCCEEEETTCCT-------------------------TTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCE
T ss_pred             ccccccccCccccch-------------------------hHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCE
Confidence            444455554444322                         1333344444444455544444332222112344445555


Q ss_pred             EECcCCcceeEcCCCCcCccccceEecccccCCCCCCcccCCCCCCCEEeccC-----------CCCCCCcchhHHhccc
Q 046398          405 FSASGNSLILQVNPNWVPPFQLKTLLLMSCHLGPQFPSWLHSQKNLSVLDISN-----------ARISDTIPRWFWNSIF  473 (794)
Q Consensus       405 L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~-----------n~l~~~~p~~~~~~~~  473 (794)
                      |+++ +.+...                       .++.....+++|++|++++           |.+++.          
T Consensus       323 L~L~-~~~~~~-----------------------~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~----------  368 (592)
T 3ogk_B          323 LETR-NVIGDR-----------------------GLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQR----------  368 (592)
T ss_dssp             EEEE-GGGHHH-----------------------HHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHH----------
T ss_pred             Eecc-CccCHH-----------------------HHHHHHHhCCCCCEEEeecCccccccccccCccCHH----------
Confidence            5444 221110                       0111122334455555552           333321          


Q ss_pred             cceeccCcccCCCCCCCEEEccCCcccccCChhhhhcCCCCcEEEcc----ccccccc-----CCccccCCCCCCEEEcc
Q 046398          474 QLSGIIPESFKNFSNLEVLNLGDNEFVGKIPTWMGEGFTSLLILILR----SNKFDGF-----LPIQLCRLTSLQILDVA  544 (794)
Q Consensus       474 ~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~----~n~l~~~-----~p~~~~~l~~L~~L~Ls  544 (794)
                          .++.....+++|++|+++.|++++..+..+...+++|+.|+++    .|.+++.     ++..+..+++|++|+++
T Consensus       369 ----~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~  444 (592)
T 3ogk_B          369 ----GLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFY  444 (592)
T ss_dssp             ----HHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEE
T ss_pred             ----HHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEe
Confidence                0111233467788888877777766666666557788888885    5566643     23335567888888887


Q ss_pred             CCc--CcccCCchhhccccccccccccCCCCcccccccccccccceeeEEEEeccchhhcccccceeEEEcCCCcccc-c
Q 046398          545 NNS--LSGTMPGCVNNFSAMATIDSSHQSNAMSYFEVTAYDCEVLEDASIVMKGSMVEYNSILNLVRIIDVSKNNFSG-E  621 (794)
Q Consensus       545 ~N~--l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~-~  621 (794)
                      +|.  +++..+..+.                                             ..+++|+.|++++|++++ .
T Consensus       445 ~~~~~l~~~~~~~~~---------------------------------------------~~~~~L~~L~L~~n~l~~~~  479 (592)
T 3ogk_B          445 LRQGGLTDLGLSYIG---------------------------------------------QYSPNVRWMLLGYVGESDEG  479 (592)
T ss_dssp             CCGGGCCHHHHHHHH---------------------------------------------HSCTTCCEEEECSCCSSHHH
T ss_pred             cCCCCccHHHHHHHH---------------------------------------------HhCccceEeeccCCCCCHHH
Confidence            543  4433222221                                             113445888888888876 3


Q ss_pred             cChhhhcccCCCEEeccccccccc-CCccccccCCCCEEeCCCCcCcccCcccc-cCCCCCCEEeCcCC
Q 046398          622 IPMELTYLRGLQSLNLSHNIFTGQ-IPENIGNLISIESLDFSTNQLSSKISQSM-SSLSFLNHLNVSNN  688 (794)
Q Consensus       622 ip~~l~~l~~L~~L~Ls~N~l~~~-ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l-~~l~~L~~L~ls~N  688 (794)
                      ++..+..+++|++|+|++|.+++. ++..+..+++|+.|+|++|+++......+ ..++.+....+..+
T Consensus       480 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~~~~p~l~~~~~~~~  548 (592)
T 3ogk_B          480 LMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPSR  548 (592)
T ss_dssp             HHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGGGGCCTTEEEEEECCC
T ss_pred             HHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHHHHHHHHhCCCcEEEEecCc
Confidence            455567788899999999988754 34445678899999999999887644333 35666666555544

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.96  E-value=8.2e-31  Score=302.67  Aligned_cols=380  Identities=14%  Similarity=0.069  Sum_probs=245.6

Q ss_pred             CCCCCCEEECcCCCCCCCCCccccC-CC-CCCeEeeeccCCCCCCCccccCCCCCCcEEEccCCCCCCCCCchhhhccCC
Q 046398          198 NLTSLRHLDLSANKFNSTTAGWLSK-FN-HLEFLSLSSNGLQGTISSIGLENLTSIKTIDLSLNFELGGPIPTSFVRLCE  275 (794)
Q Consensus       198 ~l~~L~~L~Ls~n~l~~~~~~~l~~-l~-~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~  275 (794)
                      ++++|++|+|++|.+++..+..+.. ++ +|++|++++|.-   +....                     ++.....+++
T Consensus       110 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~---~~~~~---------------------l~~~~~~~~~  165 (592)
T 3ogk_B          110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSG---FTTDG---------------------LLSIVTHCRK  165 (592)
T ss_dssp             HCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEE---EEHHH---------------------HHHHHHHCTT
T ss_pred             hCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCC---cCHHH---------------------HHHHHhhCCC
Confidence            5677777777777766655555544 23 377777766541   00001                     1111223444


Q ss_pred             CCEEEccCCCCCcch----HHHHHhhhhcCcCCccEEEeeccccc----ccccccccCCCCCCEEEccCCcCcCCCCCCc
Q 046398          276 LTSIDVSDVKLSQDL----SQVLDILSACGASALESLVFSSSQIS----GHLTSQLGQFKSLRTLSLDDNCISGPLPPAL  347 (794)
Q Consensus       276 L~~L~l~~~~l~~~~----~~~l~~l~~~~~~~L~~L~L~~n~l~----~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l  347 (794)
                      |+.|++++|.+++..    +.....+     ++|++|++++|.++    +.++..+..+++|++|++++|.+.+ +|..+
T Consensus       166 L~~L~L~~~~~~~~~~~~l~~~~~~~-----~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~  239 (592)
T 3ogk_B          166 IKTLLMEESSFSEKDGKWLHELAQHN-----TSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFF  239 (592)
T ss_dssp             CSEEECTTCEEECCCSHHHHHHHHHC-----CCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHH
T ss_pred             CCEEECccccccCcchhHHHHHHhcC-----CCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHH
Confidence            444444444443331    1122222     25555555555544    2233334456666777776666653 44555


Q ss_pred             CCCCCCCEEEccCCccc---ccCCccccCCCCCCeEeccCcccccccChhhhcCCCCCCEEECcCCcceeEcCCCCcCcc
Q 046398          348 GDLSSLTRLDLSRNMLN---GSIPLSLGKISHLEYLDLSNNKMNGTLSEIHFVNLTKLTWFSASGNSLILQVNPNWVPPF  424 (794)
Q Consensus       348 ~~l~~L~~L~Ls~n~l~---~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~  424 (794)
                      ..+++|++|+++.+...   +..+..+..+++|+.|+++++... .++. .+..+++|+.|++++|.+....        
T Consensus       240 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~l~~-~~~~~~~L~~L~Ls~~~l~~~~--------  309 (592)
T 3ogk_B          240 KAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPN-EMPI-LFPFAAQIRKLDLLYALLETED--------  309 (592)
T ss_dssp             HHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTT-TGGG-GGGGGGGCCEEEETTCCCCHHH--------
T ss_pred             hhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchh-HHHH-HHhhcCCCcEEecCCCcCCHHH--------
Confidence            66667777777643222   234456677889999999886443 4544 5677889999998888643211        


Q ss_pred             ccceEecccccCCCCCCcccCCCCCCCEEeccCCCCCCCcchhHHhccccceeccCcccCCCCCCCEEEcc---------
Q 046398          425 QLKTLLLMSCHLGPQFPSWLHSQKNLSVLDISNARISDTIPRWFWNSIFQLSGIIPESFKNFSNLEVLNLG---------  495 (794)
Q Consensus       425 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~l~~~~p~~l~~l~~L~~L~Ls---------  495 (794)
                                     ++..+..+++|++|+++ +.+.+.              .++.....+++|++|+++         
T Consensus       310 ---------------~~~~~~~~~~L~~L~L~-~~~~~~--------------~l~~~~~~~~~L~~L~L~~g~~~~~~~  359 (592)
T 3ogk_B          310 ---------------HCTLIQKCPNLEVLETR-NVIGDR--------------GLEVLAQYCKQLKRLRIERGADEQGME  359 (592)
T ss_dssp             ---------------HHHHHTTCTTCCEEEEE-GGGHHH--------------HHHHHHHHCTTCCEEEEECCCCSSTTS
T ss_pred             ---------------HHHHHHhCcCCCEEecc-CccCHH--------------HHHHHHHhCCCCCEEEeecCccccccc
Confidence                           12235678899999999 443321              233344578899999999         


Q ss_pred             --CCcccccCChhhhhcCCCCcEEEcccccccccCCccccC-CCCCCEEEcc----CCcCcccC-----Cchhhcccccc
Q 046398          496 --DNEFVGKIPTWMGEGFTSLLILILRSNKFDGFLPIQLCR-LTSLQILDVA----NNSLSGTM-----PGCVNNFSAMA  563 (794)
Q Consensus       496 --~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~-l~~L~~L~Ls----~N~l~~~~-----p~~~~~l~~L~  563 (794)
                        .|.+++.....+...+++|+.|+++.|++++..+..+.. +++|+.|+++    .|.+++..     +..+.+     
T Consensus       360 ~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~-----  434 (592)
T 3ogk_B          360 DEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIG-----  434 (592)
T ss_dssp             STTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHH-----
T ss_pred             cccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHh-----
Confidence              466765444444557999999999999998877777765 8999999997    66776532     222222     


Q ss_pred             ccccccCCCCcccccccccccccceeeEEEEeccchhhcccccceeEEEcCCC--ccccccChhhhc-ccCCCEEecccc
Q 046398          564 TIDSSHQSNAMSYFEVTAYDCEVLEDASIVMKGSMVEYNSILNLVRIIDVSKN--NFSGEIPMELTY-LRGLQSLNLSHN  640 (794)
Q Consensus       564 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~LdLs~N--~l~~~ip~~l~~-l~~L~~L~Ls~N  640 (794)
                                                               +++|+.|++++|  .+++..+..+.. +++|++|+|++|
T Consensus       435 -----------------------------------------~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n  473 (592)
T 3ogk_B          435 -----------------------------------------CKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYV  473 (592)
T ss_dssp             -----------------------------------------CTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSC
T ss_pred             -----------------------------------------CCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCC
Confidence                                                     344588899754  377766666654 899999999999


Q ss_pred             cccc-cCCccccccCCCCEEeCCCCcCccc-CcccccCCCCCCEEeCcCCccccc
Q 046398          641 IFTG-QIPENIGNLISIESLDFSTNQLSSK-ISQSMSSLSFLNHLNVSNNLLTGK  693 (794)
Q Consensus       641 ~l~~-~ip~~l~~l~~L~~L~Ls~N~l~~~-~p~~l~~l~~L~~L~ls~N~l~g~  693 (794)
                      ++++ .++..+..+++|+.|+|++|++++. ++.....+++|++|++++|++++.
T Consensus       474 ~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~  528 (592)
T 3ogk_B          474 GESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMT  528 (592)
T ss_dssp             CSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTT
T ss_pred             CCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHH
Confidence            9986 4455668899999999999998765 445556899999999999998865

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.95  E-value=5.9e-28  Score=259.31  Aligned_cols=261  Identities=21%  Similarity=0.306  Sum_probs=188.7

Q ss_pred             ecccccCCCCCCEEeCCCCCCCCCCCCcccCCCCCCCEEEcCCCCCCCCCcccccCCccccccccCcccccccccccccc
Q 046398          109 VNPSLVDLKHLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRCLDLSWSEYALQVHSFSWL  188 (794)
Q Consensus       109 ~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~  188 (794)
                      +|..+.  ++|++|++++|++++. .+..+..+++|++|++++|++++..|..|+++++|++|++++|.+.         
T Consensus        46 iP~~~~--~~L~~L~l~~n~i~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~---------  113 (353)
T 2z80_A           46 IPSGLT--EAVKSLDLSNNRITYI-SNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS---------  113 (353)
T ss_dssp             CCTTCC--TTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS---------
T ss_pred             cccccc--ccCcEEECCCCcCccc-CHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCC---------
Confidence            444443  4899999999999864 3447899999999999999999888888999999999999988754         


Q ss_pred             ccCCCCc-cCCCCCCCEEECcCCCCCCCCC-ccccCCCCCCeEeeeccCCCCCCCccccCCCCCCcEEEccCCCCCCCCC
Q 046398          189 SGQIPNR-LGNLTSLRHLDLSANKFNSTTA-GWLSKFNHLEFLSLSSNGLQGTISSIGLENLTSIKTIDLSLNFELGGPI  266 (794)
Q Consensus       189 ~~~lp~~-l~~l~~L~~L~Ls~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~~~~~~~~~  266 (794)
                        .+|.. +.++++|++|++++|++++..+ ..+.++++|++|++++|...+.++...+.++++|++|+++ ++.+.+..
T Consensus       114 --~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~-~n~l~~~~  190 (353)
T 2z80_A          114 --NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEID-ASDLQSYE  190 (353)
T ss_dssp             --SCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEE-ETTCCEEC
T ss_pred             --cCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECC-CCCcCccC
Confidence              45544 8899999999999999987766 6789999999999999953335554478899999999999 66788888


Q ss_pred             chhhhccCCCCEEEccCCCCCcchHHHHHhhhhcCcCCccEEEeeccccccccccccc---CCCCCCEEEccCCcCcC--
Q 046398          267 PTSFVRLCELTSIDVSDVKLSQDLSQVLDILSACGASALESLVFSSSQISGHLTSQLG---QFKSLRTLSLDDNCISG--  341 (794)
Q Consensus       267 ~~~l~~l~~L~~L~l~~~~l~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~~l~---~l~~L~~L~L~~n~l~~--  341 (794)
                      |..+..+++|+.|++++|.+.......+..++     +|++|++++|.+++..+..+.   ..+.++.++++++.+++  
T Consensus       191 ~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~-----~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~  265 (353)
T 2z80_A          191 PKSLKSIQNVSHLILHMKQHILLLEIFVDVTS-----SVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDES  265 (353)
T ss_dssp             TTTTTTCSEEEEEEEECSCSTTHHHHHHHHTT-----TEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHH
T ss_pred             HHHHhccccCCeecCCCCccccchhhhhhhcc-----cccEEECCCCccccccccccccccccchhhccccccccccCcc
Confidence            88899999999999999988654444444444     888888888888775544332   23455566665555543  


Q ss_pred             --CCCCCcCCCCCCCEEEccCCcccccCCcc-ccCCCCCCeEeccCcccccc
Q 046398          342 --PLPPALGDLSSLTRLDLSRNMLNGSIPLS-LGKISHLEYLDLSNNKMNGT  390 (794)
Q Consensus       342 --~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~-l~~l~~L~~L~Ls~N~l~~~  390 (794)
                        .+|.++..+++|++|++++|+++ .+|.. +..+++|++|++++|++.+.
T Consensus       266 l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~~  316 (353)
T 2z80_A          266 LFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCS  316 (353)
T ss_dssp             HHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred             hhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccCc
Confidence              13344455555555555555555 33333 34555555555555555543

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.95  E-value=8.7e-28  Score=258.02  Aligned_cols=279  Identities=20%  Similarity=0.260  Sum_probs=197.8

Q ss_pred             CCCCCEEEccCCcCcCCCCCCcCCCCCCCEEEccCCcccccCCccccCCCCCCeEeccCcccccccChhhhcCCCCCCEE
Q 046398          326 FKSLRTLSLDDNCISGPLPPALGDLSSLTRLDLSRNMLNGSIPLSLGKISHLEYLDLSNNKMNGTLSEIHFVNLTKLTWF  405 (794)
Q Consensus       326 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L  405 (794)
                      ++.....+.+++.++ .+|..+.  ++|++|++++|.+++..+..+..+++|++|++++|++++. +...+.++++|++|
T Consensus        30 C~~~~~c~~~~~~l~-~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L  105 (353)
T 2z80_A           30 CDRNGICKGSSGSLN-SIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTI-EEDSFSSLGSLEHL  105 (353)
T ss_dssp             ECTTSEEECCSTTCS-SCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEE-CTTTTTTCTTCCEE
T ss_pred             CCCCeEeeCCCCCcc-ccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCcc-CHhhcCCCCCCCEE
Confidence            445556777777776 4555443  4677777777777755555667777777777777776633 22245555555555


Q ss_pred             ECcCCcceeEcCCCCcCccccceEecccccCCCCCCcccCCCCCCCEEeccCCCCCCCcchhHHhccccceeccCc--cc
Q 046398          406 SASGNSLILQVNPNWVPPFQLKTLLLMSCHLGPQFPSWLHSQKNLSVLDISNARISDTIPRWFWNSIFQLSGIIPE--SF  483 (794)
Q Consensus       406 ~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~l~~~~p~--~l  483 (794)
                      ++++|                        .+++..+..+..+++|++|++++|++++                +|.  .+
T Consensus       106 ~Ls~n------------------------~l~~~~~~~~~~l~~L~~L~L~~n~l~~----------------l~~~~~~  145 (353)
T 2z80_A          106 DLSYN------------------------YLSNLSSSWFKPLSSLTFLNLLGNPYKT----------------LGETSLF  145 (353)
T ss_dssp             ECCSS------------------------CCSSCCHHHHTTCTTCSEEECTTCCCSS----------------SCSSCSC
T ss_pred             ECCCC------------------------cCCcCCHhHhCCCccCCEEECCCCCCcc----------------cCchhhh
Confidence            55555                        4444444457778888888888888775                333  67


Q ss_pred             CCCCCCCEEEccCCc-ccccCChhhhhcCCCCcEEEcccccccccCCccccCCCCCCEEEccCCcCcccCCchhhccccc
Q 046398          484 KNFSNLEVLNLGDNE-FVGKIPTWMGEGFTSLLILILRSNKFDGFLPIQLCRLTSLQILDVANNSLSGTMPGCVNNFSAM  562 (794)
Q Consensus       484 ~~l~~L~~L~Ls~n~-l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L  562 (794)
                      ..+++|++|++++|+ +. .++...+..+++|+.|++++|++++..|..+..+++|++|++++|++....+..+..    
T Consensus       146 ~~l~~L~~L~l~~n~~~~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~----  220 (353)
T 2z80_A          146 SHLTKLQILRVGNMDTFT-KIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDV----  220 (353)
T ss_dssp             TTCTTCCEEEEEESSSCC-EECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHH----
T ss_pred             ccCCCCcEEECCCCcccc-ccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhh----
Confidence            788888888888884 54 454333346888889999999888888888888889999999988875322222222    


Q ss_pred             cccccccCCCCcccccccccccccceeeEEEEeccchhhcccccceeEEEcCCCccccccChhhh---cccCCCEEeccc
Q 046398          563 ATIDSSHQSNAMSYFEVTAYDCEVLEDASIVMKGSMVEYNSILNLVRIIDVSKNNFSGEIPMELT---YLRGLQSLNLSH  639 (794)
Q Consensus       563 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~---~l~~L~~L~Ls~  639 (794)
                                                                ++.|+.|++++|++++..+..+.   ....++.++|++
T Consensus       221 ------------------------------------------~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~  258 (353)
T 2z80_A          221 ------------------------------------------TSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRN  258 (353)
T ss_dssp             ------------------------------------------TTTEEEEEEESCBCTTCCCC------CCCCCCEEEEES
T ss_pred             ------------------------------------------cccccEEECCCCccccccccccccccccchhhcccccc
Confidence                                                      34558889999998876555443   356788888888


Q ss_pred             ccccc----cCCccccccCCCCEEeCCCCcCcccCccc-ccCCCCCCEEeCcCCcccccCCC
Q 046398          640 NIFTG----QIPENIGNLISIESLDFSTNQLSSKISQS-MSSLSFLNHLNVSNNLLTGKIPS  696 (794)
Q Consensus       640 N~l~~----~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~-l~~l~~L~~L~ls~N~l~g~iP~  696 (794)
                      +.+++    .+|+.+.++++|+.|++++|+++. +|.. +..+++|++|++++|++++.+|.
T Consensus       259 ~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~-i~~~~~~~l~~L~~L~L~~N~~~~~~~~  319 (353)
T 2z80_A          259 VKITDESLFQVMKLLNQISGLLELEFSRNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCSCPR  319 (353)
T ss_dssp             CBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred             ccccCcchhhhHHHHhcccCCCEEECCCCCCCc-cCHHHHhcCCCCCEEEeeCCCccCcCCC
Confidence            88876    478889999999999999999995 5554 68999999999999999998874

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.95  E-value=3e-27  Score=248.56  Aligned_cols=254  Identities=22%  Similarity=0.266  Sum_probs=168.4

Q ss_pred             CEEEccCCcCcCCCCCCcCCCCCCCEEEccCCcccccCCccccCCCCCCeEeccCcccccccChhhhcCCCCCCEEECcC
Q 046398          330 RTLSLDDNCISGPLPPALGDLSSLTRLDLSRNMLNGSIPLSLGKISHLEYLDLSNNKMNGTLSEIHFVNLTKLTWFSASG  409 (794)
Q Consensus       330 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~ls~  409 (794)
                      +.++.+++.++ .+|..+.  ++|++|++++|.+++..+..+..+++|++|++++|.+...-                  
T Consensus        10 ~~l~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~------------------   68 (306)
T 2z66_A           10 TEIRCNSKGLT-SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKG------------------   68 (306)
T ss_dssp             TEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEE------------------
T ss_pred             CEEEcCCCCcc-cCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCccc------------------
Confidence            45666666665 3444332  46666666666666333334566666666666666654210                  


Q ss_pred             CcceeEcCCCCcCccccceEecccccCCCCCCcccCCCCCCCEEeccCCCCCCCcchhHHhccccceeccCcccCCCCCC
Q 046398          410 NSLILQVNPNWVPPFQLKTLLLMSCHLGPQFPSWLHSQKNLSVLDISNARISDTIPRWFWNSIFQLSGIIPESFKNFSNL  489 (794)
Q Consensus       410 n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~l~~~~p~~l~~l~~L  489 (794)
                                                   ..+..+..+++|++|++++|.+++                +|..+..+++|
T Consensus        69 -----------------------------~~~~~~~~~~~L~~L~Ls~n~i~~----------------l~~~~~~l~~L  103 (306)
T 2z66_A           69 -----------------------------CCSQSDFGTTSLKYLDLSFNGVIT----------------MSSNFLGLEQL  103 (306)
T ss_dssp             -----------------------------EEEHHHHSCSCCCEEECCSCSEEE----------------EEEEEETCTTC
T ss_pred             -----------------------------CcccccccccccCEEECCCCcccc----------------ChhhcCCCCCC
Confidence                                         001112234455555555555442                34445566777


Q ss_pred             CEEEccCCcccccCChhhhhcCCCCcEEEcccccccccCCccccCCCCCCEEEccCCcCcc-cCCchhhccccccccccc
Q 046398          490 EVLNLGDNEFVGKIPTWMGEGFTSLLILILRSNKFDGFLPIQLCRLTSLQILDVANNSLSG-TMPGCVNNFSAMATIDSS  568 (794)
Q Consensus       490 ~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~~l~~~  568 (794)
                      ++|++++|++++..+...+..+++|++|++++|++.+..+..+..+++|++|++++|.+++ .+|..+..+++       
T Consensus       104 ~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~-------  176 (306)
T 2z66_A          104 EHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRN-------  176 (306)
T ss_dssp             CEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTT-------
T ss_pred             CEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcC-------
Confidence            7777777777633221223357777777777777777777777777888888888887765 45555544433       


Q ss_pred             cCCCCcccccccccccccceeeEEEEeccchhhcccccceeEEEcCCCccccccChhhhcccCCCEEecccccccccCCc
Q 046398          569 HQSNAMSYFEVTAYDCEVLEDASIVMKGSMVEYNSILNLVRIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQIPE  648 (794)
Q Consensus       569 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~  648 (794)
                                                             |+.|++++|++++..|..+..+++|++|+|++|++++..+.
T Consensus       177 ---------------------------------------L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~  217 (306)
T 2z66_A          177 ---------------------------------------LTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTF  217 (306)
T ss_dssp             ---------------------------------------CCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSG
T ss_pred             ---------------------------------------CCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChh
Confidence                                                   37788888888877778888888888888888888876666


Q ss_pred             cccccCCCCEEeCCCCcCcccCcccccCCC-CCCEEeCcCCcccccCC
Q 046398          649 NIGNLISIESLDFSTNQLSSKISQSMSSLS-FLNHLNVSNNLLTGKIP  695 (794)
Q Consensus       649 ~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~-~L~~L~ls~N~l~g~iP  695 (794)
                      .+..+++|+.|+|++|++++..|..+..++ +|++|++++|++++..+
T Consensus       218 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~  265 (306)
T 2z66_A          218 PYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE  265 (306)
T ss_dssp             GGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGG
T ss_pred             hccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccC
Confidence            788888888888888888888888888874 88888888888887643

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.95  E-value=6e-27  Score=246.23  Aligned_cols=278  Identities=23%  Similarity=0.289  Sum_probs=180.8

Q ss_pred             ccEEEeecccccccccccccCCCCCCEEEccCCcCcCCCCCCcCCCCCCCEEEccCCccccc--CCccccCCCCCCeEec
Q 046398          305 LESLVFSSSQISGHLTSQLGQFKSLRTLSLDDNCISGPLPPALGDLSSLTRLDLSRNMLNGS--IPLSLGKISHLEYLDL  382 (794)
Q Consensus       305 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~--~p~~l~~l~~L~~L~L  382 (794)
                      -+.++.+++.++.. |..+  .++|++|++++|.++...+..+.++++|++|++++|.++..  .+..+..+++|++|++
T Consensus         9 ~~~l~c~~~~l~~i-p~~~--~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L   85 (306)
T 2z66_A            9 GTEIRCNSKGLTSV-PTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDL   85 (306)
T ss_dssp             TTEEECCSSCCSSC-CSCC--CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEEC
T ss_pred             CCEEEcCCCCcccC-CCCC--CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEEC
Confidence            46789999888854 4433  37899999999999965556689999999999999999733  3566777889999999


Q ss_pred             cCcccccccChhhhcCCCCCCEEECcCCcceeEcCCCCcCccccceEecccccCCCCCCcccCCCCCCCEEeccCCCCCC
Q 046398          383 SNNKMNGTLSEIHFVNLTKLTWFSASGNSLILQVNPNWVPPFQLKTLLLMSCHLGPQFPSWLHSQKNLSVLDISNARISD  462 (794)
Q Consensus       383 s~N~l~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~  462 (794)
                      ++|.+. .++. .+..+++|+.|++++|.+..                        ..+                     
T Consensus        86 s~n~i~-~l~~-~~~~l~~L~~L~l~~n~l~~------------------------~~~---------------------  118 (306)
T 2z66_A           86 SFNGVI-TMSS-NFLGLEQLEHLDFQHSNLKQ------------------------MSE---------------------  118 (306)
T ss_dssp             CSCSEE-EEEE-EEETCTTCCEEECTTSEEES------------------------STT---------------------
T ss_pred             CCCccc-cChh-hcCCCCCCCEEECCCCcccc------------------------ccc---------------------
Confidence            998886 3433 24455555555555544321                        111                     


Q ss_pred             CcchhHHhccccceeccCcccCCCCCCCEEEccCCcccccCChhhhhcCCCCcEEEcccccccc-cCCccccCCCCCCEE
Q 046398          463 TIPRWFWNSIFQLSGIIPESFKNFSNLEVLNLGDNEFVGKIPTWMGEGFTSLLILILRSNKFDG-FLPIQLCRLTSLQIL  541 (794)
Q Consensus       463 ~~p~~~~~~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~-~~p~~~~~l~~L~~L  541 (794)
                                       ...+..+++|++|++++|++.+..+..+. .+++|++|++++|.+++ ..|..+..+++|++|
T Consensus       119 -----------------~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L  180 (306)
T 2z66_A          119 -----------------FSVFLSLRNLIYLDISHTHTRVAFNGIFN-GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFL  180 (306)
T ss_dssp             -----------------TTTTTTCTTCCEEECTTSCCEECSTTTTT-TCTTCCEEECTTCEEGGGEECSCCTTCTTCCEE
T ss_pred             -----------------chhhhhccCCCEEECCCCcCCccchhhcc-cCcCCCEEECCCCccccccchhHHhhCcCCCEE
Confidence                             02344455555555555555544443333 45666666666666654 455666666777777


Q ss_pred             EccCCcCcccCCchhhccccccccccccCCCCcccccccccccccceeeEEEEeccchhhcccccceeEEEcCCCccccc
Q 046398          542 DVANNSLSGTMPGCVNNFSAMATIDSSHQSNAMSYFEVTAYDCEVLEDASIVMKGSMVEYNSILNLVRIIDVSKNNFSGE  621 (794)
Q Consensus       542 ~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~  621 (794)
                      ++++|++++..|..+..+++|                                              +.|++++|++++.
T Consensus       181 ~Ls~n~l~~~~~~~~~~l~~L----------------------------------------------~~L~L~~N~l~~~  214 (306)
T 2z66_A          181 DLSQCQLEQLSPTAFNSLSSL----------------------------------------------QVLNMSHNNFFSL  214 (306)
T ss_dssp             ECTTSCCCEECTTTTTTCTTC----------------------------------------------CEEECTTSCCSBC
T ss_pred             ECCCCCcCCcCHHHhcCCCCC----------------------------------------------CEEECCCCccCcc
Confidence            777777766555555444433                                              6667777777766


Q ss_pred             cChhhhcccCCCEEecccccccccCCccccccC-CCCEEeCCCCcCcccCc--ccccCCCCCCEEeCcCCcccccCCC
Q 046398          622 IPMELTYLRGLQSLNLSHNIFTGQIPENIGNLI-SIESLDFSTNQLSSKIS--QSMSSLSFLNHLNVSNNLLTGKIPS  696 (794)
Q Consensus       622 ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~-~L~~L~Ls~N~l~~~~p--~~l~~l~~L~~L~ls~N~l~g~iP~  696 (794)
                      .+..+..+++|+.|+|++|++++..|..+..++ +|+.|+|++|++++..+  ....-+...+.+.+..+.+.+..|.
T Consensus       215 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~~C~~p~  292 (306)
T 2z66_A          215 DTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPS  292 (306)
T ss_dssp             CSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGGHHHHHHHHHTGGGBSCGGGCBEEESG
T ss_pred             ChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccChHHHHHHHHhhhhhhccccccccCCch
Confidence            666677777888888888888877777777774 78888888888876432  1122233344555566666666664

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.95  E-value=6.8e-27  Score=247.51  Aligned_cols=227  Identities=18%  Similarity=0.254  Sum_probs=161.7

Q ss_pred             CCCCCeEeccCcccccccChhhhcCCCCCCEEECcCCcceeEcCCCCcCccccceEecccccCCCCCCcccCCCCCCCEE
Q 046398          374 ISHLEYLDLSNNKMNGTLSEIHFVNLTKLTWFSASGNSLILQVNPNWVPPFQLKTLLLMSCHLGPQFPSWLHSQKNLSVL  453 (794)
Q Consensus       374 l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L  453 (794)
                      .++++.|++++|.+. .+|. .+..+++|++|++++|.+.                         .+|..+..+++|++|
T Consensus        80 ~~~l~~L~L~~n~l~-~lp~-~l~~l~~L~~L~L~~n~l~-------------------------~lp~~~~~l~~L~~L  132 (328)
T 4fcg_A           80 QPGRVALELRSVPLP-QFPD-QAFRLSHLQHMTIDAAGLM-------------------------ELPDTMQQFAGLETL  132 (328)
T ss_dssp             STTCCEEEEESSCCS-SCCS-CGGGGTTCSEEEEESSCCC-------------------------CCCSCGGGGTTCSEE
T ss_pred             ccceeEEEccCCCch-hcCh-hhhhCCCCCEEECCCCCcc-------------------------chhHHHhccCCCCEE
Confidence            366777777777776 5554 3444566666655555543                         445555666666666


Q ss_pred             eccCCCCCCCcchhHHhccccceeccCcccCCCCCCCEEEccCCcccccCChhhh--------hcCCCCcEEEccccccc
Q 046398          454 DISNARISDTIPRWFWNSIFQLSGIIPESFKNFSNLEVLNLGDNEFVGKIPTWMG--------EGFTSLLILILRSNKFD  525 (794)
Q Consensus       454 ~Ls~n~l~~~~p~~~~~~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~--------~~l~~L~~L~L~~n~l~  525 (794)
                      ++++|+++.                +|..+..+++|++|++++|++.+.+|..+.        .++++|++|++++|+++
T Consensus       133 ~Ls~n~l~~----------------lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~  196 (328)
T 4fcg_A          133 TLARNPLRA----------------LPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR  196 (328)
T ss_dssp             EEESCCCCC----------------CCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC
T ss_pred             ECCCCcccc----------------CcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC
Confidence            666666652                455566666777777777666666666543        13777888888888877


Q ss_pred             ccCCccccCCCCCCEEEccCCcCcccCCchhhccccccccccccCCCCcccccccccccccceeeEEEEeccchhhcccc
Q 046398          526 GFLPIQLCRLTSLQILDVANNSLSGTMPGCVNNFSAMATIDSSHQSNAMSYFEVTAYDCEVLEDASIVMKGSMVEYNSIL  605 (794)
Q Consensus       526 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l  605 (794)
                       .+|..+..+++|++|++++|++++ +|..+..+++|                                           
T Consensus       197 -~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L-------------------------------------------  231 (328)
T 4fcg_A          197 -SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKL-------------------------------------------  231 (328)
T ss_dssp             -CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTC-------------------------------------------
T ss_pred             -cchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCC-------------------------------------------
Confidence             667777788888888888888774 44445444433                                           


Q ss_pred             cceeEEEcCCCccccccChhhhcccCCCEEecccccccccCCccccccCCCCEEeCCCCcCcccCcccccCCCCCCEEeC
Q 046398          606 NLVRIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQIPENIGNLISIESLDFSTNQLSSKISQSMSSLSFLNHLNV  685 (794)
Q Consensus       606 ~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l  685 (794)
                         +.|++++|++.+.+|..++.+++|++|+|++|.+.+.+|..++++++|+.|+|++|++.+.+|..+..+++|+.+++
T Consensus       232 ---~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l  308 (328)
T 4fcg_A          232 ---EELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILV  308 (328)
T ss_dssp             ---CEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEEC
T ss_pred             ---CEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeC
Confidence               77888888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             cCCccc
Q 046398          686 SNNLLT  691 (794)
Q Consensus       686 s~N~l~  691 (794)
                      ..|.+.
T Consensus       309 ~~~~~~  314 (328)
T 4fcg_A          309 PPHLQA  314 (328)
T ss_dssp             CGGGSC
T ss_pred             CHHHHH
Confidence            866543

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.94  E-value=1.3e-27  Score=252.37  Aligned_cols=267  Identities=20%  Similarity=0.202  Sum_probs=171.0

Q ss_pred             ccEEEeecccccccccccccCCCCCCEEEccCCcCcCCCCCCcCCCCCCCEEEccCCcccccCCccccCCCCCCeEeccC
Q 046398          305 LESLVFSSSQISGHLTSQLGQFKSLRTLSLDDNCISGPLPPALGDLSSLTRLDLSRNMLNGSIPLSLGKISHLEYLDLSN  384 (794)
Q Consensus       305 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~  384 (794)
                      ++..+++.+.+...+...+..+++|++|++++|.+++..|..+..+++|++|++++|.+++..+  +..+++|++|++++
T Consensus        12 l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~   89 (317)
T 3o53_A           12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNN   89 (317)
T ss_dssp             EEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCS
T ss_pred             eeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcC
Confidence            3444445555544444444455667777777777666555566666667777777666664433  56666666666666


Q ss_pred             cccccccChhhhcCCCCCCEEECcCCcceeEcCCCCcCccccceEecccccCCCCCCcccCCCCCCCEEeccCCCCCCCc
Q 046398          385 NKMNGTLSEIHFVNLTKLTWFSASGNSLILQVNPNWVPPFQLKTLLLMSCHLGPQFPSWLHSQKNLSVLDISNARISDTI  464 (794)
Q Consensus       385 N~l~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~  464 (794)
                      |++++ ++     ..+                                                +|++|++++|++++. 
T Consensus        90 n~l~~-l~-----~~~------------------------------------------------~L~~L~l~~n~l~~~-  114 (317)
T 3o53_A           90 NYVQE-LL-----VGP------------------------------------------------SIETLHAANNNISRV-  114 (317)
T ss_dssp             SEEEE-EE-----ECT------------------------------------------------TCCEEECCSSCCSEE-
T ss_pred             Ccccc-cc-----CCC------------------------------------------------CcCEEECCCCccCCc-
Confidence            66552 11     112                                                344444444444331 


Q ss_pred             chhHHhccccceeccCcccCCCCCCCEEEccCCcccccCChhhhhcCCCCcEEEcccccccccCCccc-cCCCCCCEEEc
Q 046398          465 PRWFWNSIFQLSGIIPESFKNFSNLEVLNLGDNEFVGKIPTWMGEGFTSLLILILRSNKFDGFLPIQL-CRLTSLQILDV  543 (794)
Q Consensus       465 p~~~~~~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~~-~~l~~L~~L~L  543 (794)
                                    .+   ..+++|++|++++|++++..+..+. .+++|++|++++|++++..+..+ ..+++|++|++
T Consensus       115 --------------~~---~~~~~L~~L~l~~N~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L  176 (317)
T 3o53_A          115 --------------SC---SRGQGKKNIYLANNKITMLRDLDEG-CRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNL  176 (317)
T ss_dssp             --------------EE---CCCSSCEEEECCSSCCCSGGGBCTG-GGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEEC
T ss_pred             --------------Cc---cccCCCCEEECCCCCCCCccchhhh-ccCCCCEEECCCCCCCcccHHHHhhccCcCCEEEC
Confidence                          01   1234566666666666533232332 46666666666666666555554 35677777777


Q ss_pred             cCCcCcccCCchhhccccccccccccCCCCcccccccccccccceeeEEEEeccchhhcccccceeEEEcCCCccccccC
Q 046398          544 ANNSLSGTMPGCVNNFSAMATIDSSHQSNAMSYFEVTAYDCEVLEDASIVMKGSMVEYNSILNLVRIIDVSKNNFSGEIP  623 (794)
Q Consensus       544 s~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip  623 (794)
                      ++|++++..+..                                                .++.|+.|++++|++++ +|
T Consensus       177 ~~N~l~~~~~~~------------------------------------------------~l~~L~~L~Ls~N~l~~-l~  207 (317)
T 3o53_A          177 QYNFIYDVKGQV------------------------------------------------VFAKLKTLDLSSNKLAF-MG  207 (317)
T ss_dssp             TTSCCCEEECCC------------------------------------------------CCTTCCEEECCSSCCCE-EC
T ss_pred             CCCcCccccccc------------------------------------------------ccccCCEEECCCCcCCc-ch
Confidence            777776431100                                                13345788888888874 55


Q ss_pred             hhhhcccCCCEEecccccccccCCccccccCCCCEEeCCCCcCc-ccCcccccCCCCCCEEeCc-CCcccccCCC
Q 046398          624 MELTYLRGLQSLNLSHNIFTGQIPENIGNLISIESLDFSTNQLS-SKISQSMSSLSFLNHLNVS-NNLLTGKIPS  696 (794)
Q Consensus       624 ~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~-~~~p~~l~~l~~L~~L~ls-~N~l~g~iP~  696 (794)
                      ..+..+++|+.|+|++|+++ .+|..+..+++|+.|++++|++. +.+|..+..++.|+.++++ .+.++|..|.
T Consensus       208 ~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~~  281 (317)
T 3o53_A          208 PEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEE  281 (317)
T ss_dssp             GGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSSC
T ss_pred             hhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCchh
Confidence            56888999999999999999 67888999999999999999999 7888889999999999998 4567777664

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.94  E-value=1.7e-25  Score=254.53  Aligned_cols=263  Identities=25%  Similarity=0.301  Sum_probs=168.7

Q ss_pred             CCccEEEeecccccccccccccCCCCCCEEEccCCcCcCCCCCCcCCCCCCCEEEccCCcccccCCccccCCCCCCeEec
Q 046398          303 SALESLVFSSSQISGHLTSQLGQFKSLRTLSLDDNCISGPLPPALGDLSSLTRLDLSRNMLNGSIPLSLGKISHLEYLDL  382 (794)
Q Consensus       303 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L  382 (794)
                      ..++.|++++|.++ .+|..+.  ++|++|++++|.++ .+|.   .+++|++|+|++|+++ .+|.   .+++|++|++
T Consensus        40 ~~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~L  108 (622)
T 3g06_A           40 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPV---LPPGLLELSI  108 (622)
T ss_dssp             HCCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCS-CCCC---CCTTCCEEEE
T ss_pred             CCCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEEC
Confidence            36788888888887 4455443  68888888888887 4454   4677888888888877 4554   5678888888


Q ss_pred             cCcccccccChhhhcCCCCCCEEECcCCcceeEcCCCCcCccccceEecccccCCCCCCcccCCCCCCCEEeccCCCCCC
Q 046398          383 SNNKMNGTLSEIHFVNLTKLTWFSASGNSLILQVNPNWVPPFQLKTLLLMSCHLGPQFPSWLHSQKNLSVLDISNARISD  462 (794)
Q Consensus       383 s~N~l~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~  462 (794)
                      ++|++++ ++.    .+++|+.|++++|.++.                         +|..   +++|++|++++|++++
T Consensus       109 s~N~l~~-l~~----~l~~L~~L~L~~N~l~~-------------------------lp~~---l~~L~~L~Ls~N~l~~  155 (622)
T 3g06_A          109 FSNPLTH-LPA----LPSGLCKLWIFGNQLTS-------------------------LPVL---PPGLQELSVSDNQLAS  155 (622)
T ss_dssp             CSCCCCC-CCC----CCTTCCEEECCSSCCSC-------------------------CCCC---CTTCCEEECCSSCCSC
T ss_pred             cCCcCCC-CCC----CCCCcCEEECCCCCCCc-------------------------CCCC---CCCCCEEECcCCcCCC
Confidence            8887763 333    44566666666665442                         2221   2566666666666654


Q ss_pred             CcchhHHhccccceeccCcccCCCCCCCEEEccCCcccccCChhhhhcCCCCcEEEcccccccccCCccccCCCCCCEEE
Q 046398          463 TIPRWFWNSIFQLSGIIPESFKNFSNLEVLNLGDNEFVGKIPTWMGEGFTSLLILILRSNKFDGFLPIQLCRLTSLQILD  542 (794)
Q Consensus       463 ~~p~~~~~~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~  542 (794)
                                      +|.   .+++|+.|++++|+++ .+|    ..+++|+.|++++|++++ +|.   .+++|+.|+
T Consensus       156 ----------------l~~---~~~~L~~L~L~~N~l~-~l~----~~~~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~  207 (622)
T 3g06_A          156 ----------------LPA---LPSELCKLWAYNNQLT-SLP----MLPSGLQELSVSDNQLAS-LPT---LPSELYKLW  207 (622)
T ss_dssp             ----------------CCC---CCTTCCEEECCSSCCS-CCC----CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEE
T ss_pred             ----------------cCC---ccCCCCEEECCCCCCC-CCc----ccCCCCcEEECCCCCCCC-CCC---ccchhhEEE
Confidence                            222   2356667777777766 455    135667777777777664 332   235677777


Q ss_pred             ccCCcCcccCCchhhccccccccccccCCCCcccccccccccccceeeEEEEeccchhhcccccceeEEEcCCCcccccc
Q 046398          543 VANNSLSGTMPGCVNNFSAMATIDSSHQSNAMSYFEVTAYDCEVLEDASIVMKGSMVEYNSILNLVRIIDVSKNNFSGEI  622 (794)
Q Consensus       543 Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~i  622 (794)
                      +++|.++. +|..                                                 +++|+.|++++|++++ +
T Consensus       208 L~~N~l~~-l~~~-------------------------------------------------~~~L~~L~Ls~N~L~~-l  236 (622)
T 3g06_A          208 AYNNRLTS-LPAL-------------------------------------------------PSGLKELIVSGNRLTS-L  236 (622)
T ss_dssp             CCSSCCSS-CCCC-------------------------------------------------CTTCCEEECCSSCCSC-C
T ss_pred             CcCCcccc-cCCC-------------------------------------------------CCCCCEEEccCCccCc-C
Confidence            77776652 2211                                                 1234667777777764 4


Q ss_pred             ChhhhcccCCCEEecccccccccCCccccccCCCCEEeCCCCcCcccCcccccCCCCCCEEeCcCCcccccCCC
Q 046398          623 PMELTYLRGLQSLNLSHNIFTGQIPENIGNLISIESLDFSTNQLSSKISQSMSSLSFLNHLNVSNNLLTGKIPS  696 (794)
Q Consensus       623 p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~  696 (794)
                      |   ..+++|+.|+|++|+|+ .+|.   .+++|+.|+|++|+++ .+|..+..+++|+.|++++|+++|.+|.
T Consensus       237 p---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~  302 (622)
T 3g06_A          237 P---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQ  302 (622)
T ss_dssp             C---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHH
T ss_pred             C---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHH
Confidence            5   34567777777777777 5555   4567777777777777 5666777777777777777777776664

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.94  E-value=3.9e-25  Score=251.65  Aligned_cols=258  Identities=27%  Similarity=0.332  Sum_probs=201.9

Q ss_pred             CCCCEEEccCCcCcCCCCCCcCCCCCCCEEEccCCcccccCCccccCCCCCCeEeccCcccccccChhhhcCCCCCCEEE
Q 046398          327 KSLRTLSLDDNCISGPLPPALGDLSSLTRLDLSRNMLNGSIPLSLGKISHLEYLDLSNNKMNGTLSEIHFVNLTKLTWFS  406 (794)
Q Consensus       327 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~  406 (794)
                      .+++.|++++|.++ .+|..+.  ++|++|++++|.++ .+|.   .+++|++|++++|+++ .+|.    .+++|+.|+
T Consensus        40 ~~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~-~lp~----~l~~L~~L~  107 (622)
T 3g06_A           40 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPV----LPPGLLELS  107 (622)
T ss_dssp             HCCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCS-CCCC----CCTTCCEEE
T ss_pred             CCCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCC-cCCC----CCCCCCEEE
Confidence            46899999999998 6777665  79999999999998 5665   5689999999999987 4554    456666666


Q ss_pred             CcCCcceeEcCCCCcCccccceEecccccCCCCCCcccCCCCCCCEEeccCCCCCCCcchhHHhccccceeccCcccCCC
Q 046398          407 ASGNSLILQVNPNWVPPFQLKTLLLMSCHLGPQFPSWLHSQKNLSVLDISNARISDTIPRWFWNSIFQLSGIIPESFKNF  486 (794)
Q Consensus       407 ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~l~~~~p~~l~~l  486 (794)
                      +++|.++                        + +|.   .+++|+.|++++|++++                +|..   +
T Consensus       108 Ls~N~l~------------------------~-l~~---~l~~L~~L~L~~N~l~~----------------lp~~---l  140 (622)
T 3g06_A          108 IFSNPLT------------------------H-LPA---LPSGLCKLWIFGNQLTS----------------LPVL---P  140 (622)
T ss_dssp             ECSCCCC------------------------C-CCC---CCTTCCEEECCSSCCSC----------------CCCC---C
T ss_pred             CcCCcCC------------------------C-CCC---CCCCcCEEECCCCCCCc----------------CCCC---C
Confidence            6666543                        2 222   46789999999999886                4443   4


Q ss_pred             CCCCEEEccCCcccccCChhhhhcCCCCcEEEcccccccccCCccccCCCCCCEEEccCCcCcccCCchhhccccccccc
Q 046398          487 SNLEVLNLGDNEFVGKIPTWMGEGFTSLLILILRSNKFDGFLPIQLCRLTSLQILDVANNSLSGTMPGCVNNFSAMATID  566 (794)
Q Consensus       487 ~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~  566 (794)
                      ++|++|++++|+++ .+|.    .+++|+.|++++|++++ +|   ..+++|+.|++++|++++ +|..           
T Consensus       141 ~~L~~L~Ls~N~l~-~l~~----~~~~L~~L~L~~N~l~~-l~---~~~~~L~~L~Ls~N~l~~-l~~~-----------  199 (622)
T 3g06_A          141 PGLQELSVSDNQLA-SLPA----LPSELCKLWAYNNQLTS-LP---MLPSGLQELSVSDNQLAS-LPTL-----------  199 (622)
T ss_dssp             TTCCEEECCSSCCS-CCCC----CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCCC-----------
T ss_pred             CCCCEEECcCCcCC-CcCC----ccCCCCEEECCCCCCCC-Cc---ccCCCCcEEECCCCCCCC-CCCc-----------
Confidence            89999999999998 5664    36789999999999996 45   457899999999999984 3321           


Q ss_pred             cccCCCCcccccccccccccceeeEEEEeccchhhcccccceeEEEcCCCccccccChhhhcccCCCEEecccccccccC
Q 046398          567 SSHQSNAMSYFEVTAYDCEVLEDASIVMKGSMVEYNSILNLVRIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQI  646 (794)
Q Consensus       567 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~i  646 (794)
                                                            ++.|+.|++++|.++ .+|..   +++|+.|+|++|++++ +
T Consensus       200 --------------------------------------~~~L~~L~L~~N~l~-~l~~~---~~~L~~L~Ls~N~L~~-l  236 (622)
T 3g06_A          200 --------------------------------------PSELYKLWAYNNRLT-SLPAL---PSGLKELIVSGNRLTS-L  236 (622)
T ss_dssp             --------------------------------------CTTCCEEECCSSCCS-SCCCC---CTTCCEEECCSSCCSC-C
T ss_pred             --------------------------------------cchhhEEECcCCccc-ccCCC---CCCCCEEEccCCccCc-C
Confidence                                                  234588999999998 56643   5889999999999994 7


Q ss_pred             CccccccCCCCEEeCCCCcCcccCcccccCCCCCCEEeCcCCcccccCCCC-CccCccCcccccCCCcCC
Q 046398          647 PENIGNLISIESLDFSTNQLSSKISQSMSSLSFLNHLNVSNNLLTGKIPSS-TQLQSFDASCFVGNNLCG  715 (794)
Q Consensus       647 p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~~-~~~~~~~~~~~~gn~lcg  715 (794)
                      |   ..+++|+.|+|++|+++. +|.   .+++|+.|++++|+++ .||.. ..+..+....+.+|.+.|
T Consensus       237 p---~~l~~L~~L~Ls~N~L~~-lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~  298 (622)
T 3g06_A          237 P---VLPSELKELMVSGNRLTS-LPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSE  298 (622)
T ss_dssp             C---CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCH
T ss_pred             C---CCCCcCcEEECCCCCCCc-CCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCC
Confidence            7   456899999999999995 565   6789999999999999 67753 455566666677876554

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.94  E-value=1.3e-25  Score=249.38  Aligned_cols=249  Identities=22%  Similarity=0.240  Sum_probs=164.0

Q ss_pred             CCCEEeCCCCCCCCCCCCcccCCCCCCCEEEcCCCCCCCCCcccccCCccccccccCccccccccccccccccCCCCccC
Q 046398          118 HLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRCLDLSWSEYALQVHSFSWLSGQIPNRLG  197 (794)
Q Consensus       118 ~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~~~~lp~~l~  197 (794)
                      ..+.++.++..++  .+|..+.  ++|++|+|++|++++..|..|.++++|++|+|++|.+.          +..|..|.
T Consensus        55 ~~~~v~c~~~~l~--~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~----------~~~~~~~~  120 (452)
T 3zyi_A           55 QFSKVVCTRRGLS--EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIR----------QIEVGAFN  120 (452)
T ss_dssp             SSCEEECCSSCCS--SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC----------EECTTTTT
T ss_pred             CCcEEEECCCCcC--ccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccC----------CcChhhcc
Confidence            3567777777777  4676554  57888888888888777788888888888888877643          34456778


Q ss_pred             CCCCCCEEECcCCCCCCCCCccccCCCCCCeEeeeccCCCCCCCccccCCCCCCcEEEccCCCCCCCCCchhhhccCCCC
Q 046398          198 NLTSLRHLDLSANKFNSTTAGWLSKFNHLEFLSLSSNGLQGTISSIGLENLTSIKTIDLSLNFELGGPIPTSFVRLCELT  277 (794)
Q Consensus       198 ~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~  277 (794)
                      ++++|++|+|++|+++...+..+..+++|++|++++|.++ .++...+.++++|++|+++.++.+....+..+..+++|+
T Consensus       121 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~  199 (452)
T 3zyi_A          121 GLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLK  199 (452)
T ss_dssp             TCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCC-EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCC
T ss_pred             CcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcc-eeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCC
Confidence            8888888888888888877777888888888888888887 444447778888888888754555444444566777777


Q ss_pred             EEEccCCCCCcchHHHHHhhhhcCcCCccEEEeecccccccccccccCCCCCCEEEccCCcCcCCCCCCcCCCCCCCEEE
Q 046398          278 SIDVSDVKLSQDLSQVLDILSACGASALESLVFSSSQISGHLTSQLGQFKSLRTLSLDDNCISGPLPPALGDLSSLTRLD  357 (794)
Q Consensus       278 ~L~l~~~~l~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~  357 (794)
                      .|++++|.+++..  .+     ..+++|++|++++|.+++..|..|..+++|+.|++++|.+++..+..+.++++|++|+
T Consensus       200 ~L~L~~n~l~~~~--~~-----~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  272 (452)
T 3zyi_A          200 YLNLGMCNIKDMP--NL-----TPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELN  272 (452)
T ss_dssp             EEECTTSCCSSCC--CC-----TTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred             EEECCCCcccccc--cc-----cccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEE
Confidence            7777777665431  11     1223555555555555555555555555555555555555555555555555555555


Q ss_pred             ccCCcccccCCccccCCCCCCeEeccCcccc
Q 046398          358 LSRNMLNGSIPLSLGKISHLEYLDLSNNKMN  388 (794)
Q Consensus       358 Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~  388 (794)
                      |++|++++..+..+..+++|++|++++|.+.
T Consensus       273 L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~  303 (452)
T 3zyi_A          273 LAHNNLSSLPHDLFTPLRYLVELHLHHNPWN  303 (452)
T ss_dssp             CCSSCCSCCCTTSSTTCTTCCEEECCSSCEE
T ss_pred             CCCCcCCccChHHhccccCCCEEEccCCCcC
Confidence            5555555444444455555555555555543

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.93  E-value=3.8e-25  Score=244.79  Aligned_cols=250  Identities=21%  Similarity=0.247  Sum_probs=181.9

Q ss_pred             CCCEEEccCCcccccCCccccCCCCCCeEeccCcccccccChhhhcCCCCCCEEECcCCcceeEcCCCCcCccccceEec
Q 046398          352 SLTRLDLSRNMLNGSIPLSLGKISHLEYLDLSNNKMNGTLSEIHFVNLTKLTWFSASGNSLILQVNPNWVPPFQLKTLLL  431 (794)
Q Consensus       352 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L  431 (794)
                      ..+.++.+++.++ .+|..+.  ++++.|+|++|++.+ ++...|.++++|+.|++++|.+...                
T Consensus        44 ~~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~-~~~~~~~~l~~L~~L~Ls~n~i~~i----------------  103 (440)
T 3zyj_A           44 QFSKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQI-IKVNSFKHLRHLEILQLSRNHIRTI----------------  103 (440)
T ss_dssp             TSCEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCE-ECTTTTSSCSSCCEEECCSSCCCEE----------------
T ss_pred             CCCEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCe-eCHHHhhCCCCCCEEECCCCcCCcc----------------
Confidence            3567788887777 5666554  678888888888873 4434677777777777777665543                


Q ss_pred             ccccCCCCCCcccCCCCCCCEEeccCCCCCCCcchhHHhccccceeccCcccCCCCCCCEEEccCCcccccCChhhhhcC
Q 046398          432 MSCHLGPQFPSWLHSQKNLSVLDISNARISDTIPRWFWNSIFQLSGIIPESFKNFSNLEVLNLGDNEFVGKIPTWMGEGF  511 (794)
Q Consensus       432 ~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l  511 (794)
                              .+..+..+++|++|++++|++++.               .+..+..+++|++|++++|+++ .+|...+..+
T Consensus       104 --------~~~~~~~l~~L~~L~L~~n~l~~~---------------~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~~~l  159 (440)
T 3zyj_A          104 --------EIGAFNGLANLNTLELFDNRLTTI---------------PNGAFVYLSKLKELWLRNNPIE-SIPSYAFNRI  159 (440)
T ss_dssp             --------CGGGGTTCSSCCEEECCSSCCSSC---------------CTTTSCSCSSCCEEECCSCCCC-EECTTTTTTC
T ss_pred             --------ChhhccCCccCCEEECCCCcCCee---------------CHhHhhccccCceeeCCCCccc-ccCHHHhhhC
Confidence                    344566667777777777776641               2335667777777777777776 4555444467


Q ss_pred             CCCcEEEccccc-ccccCCccccCCCCCCEEEccCCcCcccCCchhhccccccccccccCCCCcccccccccccccceee
Q 046398          512 TSLLILILRSNK-FDGFLPIQLCRLTSLQILDVANNSLSGTMPGCVNNFSAMATIDSSHQSNAMSYFEVTAYDCEVLEDA  590 (794)
Q Consensus       512 ~~L~~L~L~~n~-l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~  590 (794)
                      ++|+.|++++|+ +....+..|..+++|++|++++|+++ .+|. +..                                
T Consensus       160 ~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~~-~~~--------------------------------  205 (440)
T 3zyj_A          160 PSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIPN-LTP--------------------------------  205 (440)
T ss_dssp             TTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCCC-CTT--------------------------------
T ss_pred             cccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-cccc-cCC--------------------------------
Confidence            777888887744 33333446778888888888888876 3331 222                                


Q ss_pred             EEEEeccchhhcccccceeEEEcCCCccccccChhhhcccCCCEEecccccccccCCccccccCCCCEEeCCCCcCcccC
Q 046398          591 SIVMKGSMVEYNSILNLVRIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQIPENIGNLISIESLDFSTNQLSSKI  670 (794)
Q Consensus       591 ~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~  670 (794)
                                    +++|+.||+++|++++..|..|..+++|+.|+|++|++++..|..|.++++|+.|+|++|++++..
T Consensus       206 --------------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~  271 (440)
T 3zyj_A          206 --------------LIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLP  271 (440)
T ss_dssp             --------------CSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCC
T ss_pred             --------------CcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccC
Confidence                          334588888888888888888888999999999999999888888999999999999999999888


Q ss_pred             cccccCCCCCCEEeCcCCccccc
Q 046398          671 SQSMSSLSFLNHLNVSNNLLTGK  693 (794)
Q Consensus       671 p~~l~~l~~L~~L~ls~N~l~g~  693 (794)
                      +..+..+++|+.|++++|++...
T Consensus       272 ~~~~~~l~~L~~L~L~~Np~~Cd  294 (440)
T 3zyj_A          272 HDLFTPLHHLERIHLHHNPWNCN  294 (440)
T ss_dssp             TTTTSSCTTCCEEECCSSCEECS
T ss_pred             hhHhccccCCCEEEcCCCCccCC
Confidence            88888899999999999988754

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.93  E-value=1.5e-25  Score=232.87  Aligned_cols=170  Identities=18%  Similarity=0.242  Sum_probs=107.7

Q ss_pred             CcccCCCCCCCEEEccCCcccccCChhhhhcCCCCcEEEcccccccccCCccccCCCCCCEEEccCCcCcccCCchhhcc
Q 046398          480 PESFKNFSNLEVLNLGDNEFVGKIPTWMGEGFTSLLILILRSNKFDGFLPIQLCRLTSLQILDVANNSLSGTMPGCVNNF  559 (794)
Q Consensus       480 p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l  559 (794)
                      |..+..+++|++|++++|++++..|..+. .+++|++|++++|++++..+..+..+++|++|++++|++++..+..+..+
T Consensus        98 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l  176 (285)
T 1ozn_A           98 PATFHGLGRLHTLHLDRCGLQELGPGLFR-GLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGL  176 (285)
T ss_dssp             TTTTTTCTTCCEEECTTSCCCCCCTTTTT-TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTC
T ss_pred             HHHhcCCcCCCEEECCCCcCCEECHhHhh-CCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCc
Confidence            34455556666666666666533333332 46666666666666665555556667777777777777665444444443


Q ss_pred             ccccccccccCCCCcccccccccccccceeeEEEEeccchhhcccccceeEEEcCCCccccccChhhhcccCCCEEeccc
Q 046398          560 SAMATIDSSHQSNAMSYFEVTAYDCEVLEDASIVMKGSMVEYNSILNLVRIIDVSKNNFSGEIPMELTYLRGLQSLNLSH  639 (794)
Q Consensus       560 ~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~  639 (794)
                      ++|                                              +.|++++|++++..|..+..+++|+.|++++
T Consensus       177 ~~L----------------------------------------------~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~  210 (285)
T 1ozn_A          177 HSL----------------------------------------------DRLLLHQNRVAHVHPHAFRDLGRLMTLYLFA  210 (285)
T ss_dssp             TTC----------------------------------------------CEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             ccc----------------------------------------------CEEECCCCcccccCHhHccCcccccEeeCCC
Confidence            333                                              6677777777777777777777888888888


Q ss_pred             ccccccCCccccccCCCCEEeCCCCcCcccCcccccCCCCCCEEeCcCCcccccCCCC
Q 046398          640 NIFTGQIPENIGNLISIESLDFSTNQLSSKISQSMSSLSFLNHLNVSNNLLTGKIPSS  697 (794)
Q Consensus       640 N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~~  697 (794)
                      |++++..++.+..+++|+.|++++|++....+.. .-...++.+..+.+.+.+..|..
T Consensus       211 n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~-~~~~~l~~~~~~~~~~~c~~p~~  267 (285)
T 1ozn_A          211 NNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR-PLWAWLQKFRGSSSEVPCSLPQR  267 (285)
T ss_dssp             SCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGH-HHHHHHHHCCSEECCCBEEESGG
T ss_pred             CcCCcCCHHHcccCcccCEEeccCCCccCCCCcH-HHHHHHHhcccccCccccCCchH
Confidence            8887655566777888888888888877644421 11233455557777787777753

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.93  E-value=5.2e-25  Score=244.60  Aligned_cols=87  Identities=21%  Similarity=0.236  Sum_probs=62.3

Q ss_pred             ceeEEEcCCCccccccChhhhcccCCCEEecccccccccCCccccccCCCCEEeCCCCcCcccCcccccCCCCCCEEeCc
Q 046398          607 LVRIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQIPENIGNLISIESLDFSTNQLSSKISQSMSSLSFLNHLNVS  686 (794)
Q Consensus       607 ~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls  686 (794)
                      +|+.|++++|++++..|..+..+++|+.|+|++|++++..|..|.++++|+.|+|++|++++..+..+..+++|+.|+++
T Consensus       219 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~  298 (452)
T 3zyi_A          219 GLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLH  298 (452)
T ss_dssp             TCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECC
T ss_pred             cccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEcc
Confidence            34666777777766667777777777777777777776667777777777777777777776666667777777777777


Q ss_pred             CCccccc
Q 046398          687 NNLLTGK  693 (794)
Q Consensus       687 ~N~l~g~  693 (794)
                      +|++...
T Consensus       299 ~Np~~Cd  305 (452)
T 3zyi_A          299 HNPWNCD  305 (452)
T ss_dssp             SSCEECS
T ss_pred             CCCcCCC
Confidence            7776543

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.93  E-value=2.9e-27  Score=248.97  Aligned_cols=209  Identities=21%  Similarity=0.247  Sum_probs=145.3

Q ss_pred             ccccceEecccccCCCCCCccc--CCCCCCCEEeccCCCCCCCcchhHHhccccceeccCcccCCCCCCCEEEccCCccc
Q 046398          423 PFQLKTLLLMSCHLGPQFPSWL--HSQKNLSVLDISNARISDTIPRWFWNSIFQLSGIIPESFKNFSNLEVLNLGDNEFV  500 (794)
Q Consensus       423 ~~~L~~L~L~~n~l~~~~~~~l--~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~  500 (794)
                      +++|++|++++|.+++.+|..+  ..+++|++|++++|++++. |..+...        +.  ..+++|++|++++|+++
T Consensus        94 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l--------~~--~~~~~L~~L~L~~N~l~  162 (312)
T 1wwl_A           94 ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAEL--------QQ--WLKPGLKVLSIAQAHSL  162 (312)
T ss_dssp             TSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHH--------HT--TCCTTCCEEEEESCSCC
T ss_pred             cCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHH--------HH--hhcCCCcEEEeeCCCCc
Confidence            3455555555555555556554  6777788888888877764 3322210        00  01277888888888887


Q ss_pred             ccCChhhhhcCCCCcEEEccccccccc--CCccc--cCCCCCCEEEccCCcCccc--CCchhhccccccccccccCCCCc
Q 046398          501 GKIPTWMGEGFTSLLILILRSNKFDGF--LPIQL--CRLTSLQILDVANNSLSGT--MPGCVNNFSAMATIDSSHQSNAM  574 (794)
Q Consensus       501 ~~ip~~~~~~l~~L~~L~L~~n~l~~~--~p~~~--~~l~~L~~L~Ls~N~l~~~--~p~~~~~l~~L~~l~~~~~~~~~  574 (794)
                      +..|..+. .+++|++|++++|++.+.  .|..+  ..+++|++|++++|++++.  ++..+                  
T Consensus       163 ~~~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~------------------  223 (312)
T 1wwl_A          163 NFSCEQVR-VFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSAL------------------  223 (312)
T ss_dssp             CCCTTTCC-CCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHH------------------
T ss_pred             cchHHHhc-cCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHH------------------
Confidence            54445544 678888888888887654  23333  6788888888888887621  11110                  


Q ss_pred             ccccccccccccceeeEEEEeccchhhcccccceeEEEcCCCccccccC-hhhhcccCCCEEecccccccccCCcccccc
Q 046398          575 SYFEVTAYDCEVLEDASIVMKGSMVEYNSILNLVRIIDVSKNNFSGEIP-MELTYLRGLQSLNLSHNIFTGQIPENIGNL  653 (794)
Q Consensus       575 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip-~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l  653 (794)
                                                 ...++.|+.||+++|++++.+| ..+..+++|++|+|++|+++ .+|..+.  
T Consensus       224 ---------------------------~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--  273 (312)
T 1wwl_A          224 ---------------------------AAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--  273 (312)
T ss_dssp             ---------------------------HHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--
T ss_pred             ---------------------------HhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--
Confidence                                       1123455888999999988775 45667889999999999998 7888777  


Q ss_pred             CCCCEEeCCCCcCcccCcccccCCCCCCEEeCcCCccccc
Q 046398          654 ISIESLDFSTNQLSSKISQSMSSLSFLNHLNVSNNLLTGK  693 (794)
Q Consensus       654 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~  693 (794)
                      ++|+.|||++|++++. |. +..+++|++|++++|++++.
T Consensus       274 ~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~~  311 (312)
T 1wwl_A          274 AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLDS  311 (312)
T ss_dssp             SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTCC
T ss_pred             CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCCC
Confidence            8899999999999876 65 88899999999999998864

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.93  E-value=2.7e-25  Score=230.96  Aligned_cols=148  Identities=20%  Similarity=0.242  Sum_probs=78.1

Q ss_pred             cccCCCCCCCEEEccCCcccccCChhhhhcCCCCcEEEcccccccccCCccccCCCCCCEEEccCCcCcccCCchhhccc
Q 046398          481 ESFKNFSNLEVLNLGDNEFVGKIPTWMGEGFTSLLILILRSNKFDGFLPIQLCRLTSLQILDVANNSLSGTMPGCVNNFS  560 (794)
Q Consensus       481 ~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~  560 (794)
                      ..+..+++|++|++++|+++ .++...+..+++|+.|++++|++++..+..+..+++|++|++++|++++..|..+.+++
T Consensus       123 ~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~  201 (285)
T 1ozn_A          123 GLFRGLAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLG  201 (285)
T ss_dssp             TTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCT
T ss_pred             hHhhCCcCCCEEECCCCccc-ccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcc
Confidence            33445555555555555554 23332222455555555555555544444555566666666666666555555444433


Q ss_pred             cccccccccCCCCcccccccccccccceeeEEEEeccchhhcccccceeEEEcCCCccccccChhhhcccCCCEEecccc
Q 046398          561 AMATIDSSHQSNAMSYFEVTAYDCEVLEDASIVMKGSMVEYNSILNLVRIIDVSKNNFSGEIPMELTYLRGLQSLNLSHN  640 (794)
Q Consensus       561 ~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N  640 (794)
                      +|                                              +.|++++|++++..+..+..+++|+.|+|++|
T Consensus       202 ~L----------------------------------------------~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N  235 (285)
T 1ozn_A          202 RL----------------------------------------------MTLYLFANNLSALPTEALAPLRALQYLRLNDN  235 (285)
T ss_dssp             TC----------------------------------------------CEEECCSSCCSCCCHHHHTTCTTCCEEECCSS
T ss_pred             cc----------------------------------------------cEeeCCCCcCCcCCHHHcccCcccCEEeccCC
Confidence            33                                              55666666666544455666666666666666


Q ss_pred             cccccCCccccccCCCCEEeCCCCcCcccCcccccC
Q 046398          641 IFTGQIPENIGNLISIESLDFSTNQLSSKISQSMSS  676 (794)
Q Consensus       641 ~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~  676 (794)
                      .+....+. ......++.+..+.+.+....|+.+.+
T Consensus       236 ~~~c~~~~-~~~~~~l~~~~~~~~~~~c~~p~~l~g  270 (285)
T 1ozn_A          236 PWVCDCRA-RPLWAWLQKFRGSSSEVPCSLPQRLAG  270 (285)
T ss_dssp             CEECSGGG-HHHHHHHHHCCSEECCCBEEESGGGTT
T ss_pred             CccCCCCc-HHHHHHHHhcccccCccccCCchHhCC
Confidence            66543221 111223444445666666666665543

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.93  E-value=4.6e-25  Score=244.14  Aligned_cols=245  Identities=21%  Similarity=0.255  Sum_probs=122.9

Q ss_pred             EEeCCCCCCCCCCCCcccCCCCCCCEEEcCCCCCCCCCcccccCCccccccccCccccccccccccccccCCCCccCCCC
Q 046398          121 HLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRCLDLSWSEYALQVHSFSWLSGQIPNRLGNLT  200 (794)
Q Consensus       121 ~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~~~~lp~~l~~l~  200 (794)
                      .++.++..++  .+|..+.  +++++|+|++|++++..+..|.++++|++|+|++|.+.          +..+..|.+++
T Consensus        47 ~v~c~~~~l~--~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~----------~i~~~~~~~l~  112 (440)
T 3zyj_A           47 KVICVRKNLR--EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR----------TIEIGAFNGLA  112 (440)
T ss_dssp             EEECCSCCCS--SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCC----------EECGGGGTTCS
T ss_pred             EEEeCCCCcC--cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCC----------ccChhhccCCc
Confidence            4455555555  3454443  45566666666655555555555666666666555432          22234555566


Q ss_pred             CCCEEECcCCCCCCCCCccccCCCCCCeEeeeccCCCCCCCccccCCCCCCcEEEccCCCCCCCCCchhhhccCCCCEEE
Q 046398          201 SLRHLDLSANKFNSTTAGWLSKFNHLEFLSLSSNGLQGTISSIGLENLTSIKTIDLSLNFELGGPIPTSFVRLCELTSID  280 (794)
Q Consensus       201 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~  280 (794)
                      +|++|+|++|+++...+..|..+++|++|++++|.++ .++...+.++++|++|+++.++.+....+..+.++++|+.|+
T Consensus       113 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~  191 (440)
T 3zyj_A          113 NLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLN  191 (440)
T ss_dssp             SCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCC-EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEE
T ss_pred             cCCEEECCCCcCCeeCHhHhhccccCceeeCCCCccc-ccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeec
Confidence            6666666666666555555666666666666666655 333335556666666666633333333333455555555555


Q ss_pred             ccCCCCCcchHHHHHhhhhcCcCCccEEEeecccccccccccccCCCCCCEEEccCCcCcCCCCCCcCCCCCCCEEEccC
Q 046398          281 VSDVKLSQDLSQVLDILSACGASALESLVFSSSQISGHLTSQLGQFKSLRTLSLDDNCISGPLPPALGDLSSLTRLDLSR  360 (794)
Q Consensus       281 l~~~~l~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~  360 (794)
                      +++|.++.. |. +     ..+++|++|++++|.+++..+..|..+++|++|++++|.+++..+..|.++++|++|+|++
T Consensus       192 L~~n~l~~~-~~-~-----~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  264 (440)
T 3zyj_A          192 LAMCNLREI-PN-L-----TPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAH  264 (440)
T ss_dssp             CTTSCCSSC-CC-C-----TTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTT
T ss_pred             CCCCcCccc-cc-c-----CCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCC
Confidence            555554421 10 0     1122444444444444444444444444444444444444444444444444444444444


Q ss_pred             CcccccCCccccCCCCCCeEeccCccc
Q 046398          361 NMLNGSIPLSLGKISHLEYLDLSNNKM  387 (794)
Q Consensus       361 n~l~~~~p~~l~~l~~L~~L~Ls~N~l  387 (794)
                      |++++..+..+..+++|+.|++++|.+
T Consensus       265 N~l~~~~~~~~~~l~~L~~L~L~~Np~  291 (440)
T 3zyj_A          265 NNLTLLPHDLFTPLHHLERIHLHHNPW  291 (440)
T ss_dssp             SCCCCCCTTTTSSCTTCCEEECCSSCE
T ss_pred             CCCCccChhHhccccCCCEEEcCCCCc
Confidence            444433333444444444444444443

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.93  E-value=6.1e-28  Score=278.78  Aligned_cols=162  Identities=12%  Similarity=0.043  Sum_probs=99.6

Q ss_pred             CCCCCCEEEccCCcccccCChhhhhcCCCCcEEEcc--c----cccccc-----CCccccCCCCCCEEEccCCcCcccCC
Q 046398          485 NFSNLEVLNLGDNEFVGKIPTWMGEGFTSLLILILR--S----NKFDGF-----LPIQLCRLTSLQILDVANNSLSGTMP  553 (794)
Q Consensus       485 ~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~--~----n~l~~~-----~p~~~~~l~~L~~L~Ls~N~l~~~~p  553 (794)
                      .+++|+.|+++.|++++..+..+...+++|+.|+++  +    +.+++.     ++..+..+++|++|++++ .+++..+
T Consensus       370 ~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~  448 (594)
T 2p1m_B          370 GCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVF  448 (594)
T ss_dssp             HCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHH
T ss_pred             hchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHH
Confidence            367777777777777665555555457777777777  3    344421     111245667777777765 4443222


Q ss_pred             chhhccccccccccccCCCCcccccccccccccceeeEEEEeccchhhcccccceeEEEcCCCccccccChhh-hcccCC
Q 046398          554 GCVNNFSAMATIDSSHQSNAMSYFEVTAYDCEVLEDASIVMKGSMVEYNSILNLVRIIDVSKNNFSGEIPMEL-TYLRGL  632 (794)
Q Consensus       554 ~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l-~~l~~L  632 (794)
                      ..+..                                             .+++|+.|++++|.+++..+..+ ..+++|
T Consensus       449 ~~l~~---------------------------------------------~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L  483 (594)
T 2p1m_B          449 EYIGT---------------------------------------------YAKKMEMLSVAFAGDSDLGMHHVLSGCDSL  483 (594)
T ss_dssp             HHHHH---------------------------------------------HCTTCCEEEEESCCSSHHHHHHHHHHCTTC
T ss_pred             HHHHH---------------------------------------------hchhccEeeccCCCCcHHHHHHHHhcCCCc
Confidence            22211                                             13445788888888776655555 567888


Q ss_pred             CEEecccccccccCCc-cccccCCCCEEeCCCCcCcccCcccc-cCCCCCCEEeCcCCcccc
Q 046398          633 QSLNLSHNIFTGQIPE-NIGNLISIESLDFSTNQLSSKISQSM-SSLSFLNHLNVSNNLLTG  692 (794)
Q Consensus       633 ~~L~Ls~N~l~~~ip~-~l~~l~~L~~L~Ls~N~l~~~~p~~l-~~l~~L~~L~ls~N~l~g  692 (794)
                      ++|+|++|.+++..+. ....+++|+.|++++|+++......+ ..++.|+...+..+.-..
T Consensus       484 ~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~~~~~~  545 (594)
T 2p1m_B          484 RKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDERGAPD  545 (594)
T ss_dssp             CEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEEEEECSSSCGG
T ss_pred             CEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEEEEecCCCccc
Confidence            8888888888654443 34457888888888888865444444 456677666666554433

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.93  E-value=2.1e-27  Score=250.05  Aligned_cols=247  Identities=19%  Similarity=0.255  Sum_probs=151.4

Q ss_pred             cCCCCCCEEeCCCCCCCCCCCCcccCCCCCCCEEEcCCCCC-CCCCccccc-------CCccccccccCccccccccccc
Q 046398          114 VDLKHLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEF-AGIIPHQLG-------NLSNLRCLDLSWSEYALQVHSF  185 (794)
Q Consensus       114 ~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l-~~~~p~~l~-------~l~~L~~L~Ls~~~~~~~~~~~  185 (794)
                      +..++|++|++++|.+   .+|..+...  |++|+|++|.+ ...+|..+.       ++++|++|++++|.        
T Consensus        40 ~~~~~L~~l~l~~n~l---~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~--------  106 (312)
T 1wwl_A           40 GGGRSLEYLLKRVDTE---ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLE--------  106 (312)
T ss_dssp             EEEEECTTHHHHCCTT---CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEB--------
T ss_pred             ccCCCceeEeeccccc---ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCc--------
Confidence            4455666677777766   255554433  66677777766 334555554       56777777776665        


Q ss_pred             cccccCCCCcc--CCCCCCCEEECcCCCCCCCCCccccCC-----CCCCeEeeeccCCCCCCCccccCCCCCCcEEEccC
Q 046398          186 SWLSGQIPNRL--GNLTSLRHLDLSANKFNSTTAGWLSKF-----NHLEFLSLSSNGLQGTISSIGLENLTSIKTIDLSL  258 (794)
Q Consensus       186 ~~~~~~lp~~l--~~l~~L~~L~Ls~n~l~~~~~~~l~~l-----~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~  258 (794)
                        +.+.+|..+  ..+++|++|++++|++++. |..+..+     ++|++|++++|.+.+..+. .++++++|++|+++ 
T Consensus       107 --l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~Ls-  181 (312)
T 1wwl_A          107 --VTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCE-QVRVFPALSTLDLS-  181 (312)
T ss_dssp             --CBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTT-TCCCCSSCCEEECC-
T ss_pred             --ccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHH-HhccCCCCCEEECC-
Confidence              345566655  6777777777777777776 5556655     7777777777777654444 66777777777777 


Q ss_pred             CCCCCCC--Cchhh--hccCCCCEEEccCCCCCcc--hH-HHHHhhhhcCcCCccEEEeeccccccccc-ccccCCCCCC
Q 046398          259 NFELGGP--IPTSF--VRLCELTSIDVSDVKLSQD--LS-QVLDILSACGASALESLVFSSSQISGHLT-SQLGQFKSLR  330 (794)
Q Consensus       259 ~~~~~~~--~~~~l--~~l~~L~~L~l~~~~l~~~--~~-~~l~~l~~~~~~~L~~L~L~~n~l~~~~~-~~l~~l~~L~  330 (794)
                      +|.+.+.  .+..+  ..+++|+.|++++|.+++.  ++ ..+..++     +|++|++++|.+++..| ..+..+++|+
T Consensus       182 ~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~-----~L~~L~Ls~N~l~~~~~~~~~~~l~~L~  256 (312)
T 1wwl_A          182 DNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARV-----QLQGLDLSHNSLRDAAGAPSCDWPSQLN  256 (312)
T ss_dssp             SCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTC-----CCSEEECTTSCCCSSCCCSCCCCCTTCC
T ss_pred             CCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCC-----CCCEEECCCCcCCcccchhhhhhcCCCC
Confidence            4444433  23333  6677777777777777632  11 1112222     66666666666666553 3444556666


Q ss_pred             EEEccCCcCcCCCCCCcCCCCCCCEEEccCCcccccCCccccCCCCCCeEeccCcccc
Q 046398          331 TLSLDDNCISGPLPPALGDLSSLTRLDLSRNMLNGSIPLSLGKISHLEYLDLSNNKMN  388 (794)
Q Consensus       331 ~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~  388 (794)
                      +|++++|.++ .+|..+.  ++|++|++++|++++. |. +..+++|++|++++|+++
T Consensus       257 ~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~  309 (312)
T 1wwl_A          257 SLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFL  309 (312)
T ss_dssp             EEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTT
T ss_pred             EEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCC
Confidence            6666666666 4555444  5666666666666643 43 566666666666666654

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.92  E-value=2.1e-26  Score=242.99  Aligned_cols=271  Identities=17%  Similarity=0.191  Sum_probs=203.2

Q ss_pred             CCCEEEccCCcccccCCccccCCCCCCeEeccCcccccccChhhhcCCCCCCEEECcCCcceeEcCCCCcCccccceEec
Q 046398          352 SLTRLDLSRNMLNGSIPLSLGKISHLEYLDLSNNKMNGTLSEIHFVNLTKLTWFSASGNSLILQVNPNWVPPFQLKTLLL  431 (794)
Q Consensus       352 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L  431 (794)
                      +++..+++.+.+.......+..+++|++|++++|.+++ ++...+..+++|+.|++++|.+.+..               
T Consensus        11 ~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~---------------   74 (317)
T 3o53_A           11 RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQ-ISAADLAPFTKLELLNLSSNVLYETL---------------   74 (317)
T ss_dssp             EEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCC-CCHHHHTTCTTCCEEECTTSCCEEEE---------------
T ss_pred             ceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCc-CCHHHhhCCCcCCEEECCCCcCCcch---------------
Confidence            34556677777664444555566788888888888874 44447788888888888888765432               


Q ss_pred             ccccCCCCCCcccCCCCCCCEEeccCCCCCCCcchhHHhccccceeccCcccCCCCCCCEEEccCCcccccCChhhhhcC
Q 046398          432 MSCHLGPQFPSWLHSQKNLSVLDISNARISDTIPRWFWNSIFQLSGIIPESFKNFSNLEVLNLGDNEFVGKIPTWMGEGF  511 (794)
Q Consensus       432 ~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l  511 (794)
                               +  +..+++|++|++++|++++                ++    ..++|++|++++|++++..+.    .+
T Consensus        75 ---------~--~~~l~~L~~L~Ls~n~l~~----------------l~----~~~~L~~L~l~~n~l~~~~~~----~~  119 (317)
T 3o53_A           75 ---------D--LESLSTLRTLDLNNNYVQE----------------LL----VGPSIETLHAANNNISRVSCS----RG  119 (317)
T ss_dssp             ---------E--ETTCTTCCEEECCSSEEEE----------------EE----ECTTCCEEECCSSCCSEEEEC----CC
T ss_pred             ---------h--hhhcCCCCEEECcCCcccc----------------cc----CCCCcCEEECCCCccCCcCcc----cc
Confidence                     1  5667889999999998764                22    338999999999999854332    47


Q ss_pred             CCCcEEEcccccccccCCccccCCCCCCEEEccCCcCcccCCchhhccccccccccccCCCCcccccccccccccceeeE
Q 046398          512 TSLLILILRSNKFDGFLPIQLCRLTSLQILDVANNSLSGTMPGCVNNFSAMATIDSSHQSNAMSYFEVTAYDCEVLEDAS  591 (794)
Q Consensus       512 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~  591 (794)
                      ++|+.|++++|++++..+..+..+++|++|++++|++++..+..+.                                  
T Consensus       120 ~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~----------------------------------  165 (317)
T 3o53_A          120 QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELA----------------------------------  165 (317)
T ss_dssp             SSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGG----------------------------------
T ss_pred             CCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHh----------------------------------
Confidence            8899999999999988888899999999999999999876655442                                  


Q ss_pred             EEEeccchhhcccccceeEEEcCCCccccccChhhhcccCCCEEecccccccccCCccccccCCCCEEeCCCCcCcccCc
Q 046398          592 IVMKGSMVEYNSILNLVRIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQIPENIGNLISIESLDFSTNQLSSKIS  671 (794)
Q Consensus       592 ~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p  671 (794)
                                 ..++.|+.|++++|++++. | ....+++|++|+|++|+++ .+|..+..+++|+.|+|++|++++ +|
T Consensus       166 -----------~~l~~L~~L~L~~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~L~~N~l~~-l~  230 (317)
T 3o53_A          166 -----------ASSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLVL-IE  230 (317)
T ss_dssp             -----------GGTTTCCEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCC-EECGGGGGGTTCSEEECTTSCCCE-EC
T ss_pred             -----------hccCcCCEEECCCCcCccc-c-cccccccCCEEECCCCcCC-cchhhhcccCcccEEECcCCcccc-hh
Confidence                       1134459999999999865 3 3345899999999999999 466669999999999999999995 78


Q ss_pred             ccccCCCCCCEEeCcCCccc-ccCCCC-CccCccCcccccCC-CcCCCCCCCCC
Q 046398          672 QSMSSLSFLNHLNVSNNLLT-GKIPSS-TQLQSFDASCFVGN-NLCGPPLPSCT  722 (794)
Q Consensus       672 ~~l~~l~~L~~L~ls~N~l~-g~iP~~-~~~~~~~~~~~~gn-~lcg~~~~~c~  722 (794)
                      ..+..+++|+.|++++|+++ +.+|.. ..+..+......++ .+.|.....|.
T Consensus       231 ~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~~~~~  284 (317)
T 3o53_A          231 KALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECT  284 (317)
T ss_dssp             TTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSSCCCS
T ss_pred             hHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCchhccC
Confidence            88999999999999999999 555532 22233333334545 55555444443

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.92  E-value=2.2e-25  Score=248.83  Aligned_cols=150  Identities=15%  Similarity=0.153  Sum_probs=112.3

Q ss_pred             CCCCCEEEccCCcccccCChhhhhcCCCCcEEEcccccccccCCcccc-CCCCCCEEEccCCcCcccCCchhhccccccc
Q 046398          486 FSNLEVLNLGDNEFVGKIPTWMGEGFTSLLILILRSNKFDGFLPIQLC-RLTSLQILDVANNSLSGTMPGCVNNFSAMAT  564 (794)
Q Consensus       486 l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~~~-~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~  564 (794)
                      +++|+.|++++|++++..|..+. .+++|+.|+|++|.+++..|..+. .+++|++|+|++|.+++..+..         
T Consensus       119 l~~L~~L~L~~N~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~~~---------  188 (487)
T 3oja_A          119 GQGKKNIYLANNKITMLRDLDEG-CRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQV---------  188 (487)
T ss_dssp             CSSCEEEECCSSCCCSGGGBCGG-GGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECCC---------
T ss_pred             cCCCCEEECCCCCCCCCCchhhc-CCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccccccc---------
Confidence            46677777777777755555554 577788888888888777777665 6788888888888877542211         


Q ss_pred             cccccCCCCcccccccccccccceeeEEEEeccchhhcccccceeEEEcCCCccccccChhhhcccCCCEEecccccccc
Q 046398          565 IDSSHQSNAMSYFEVTAYDCEVLEDASIVMKGSMVEYNSILNLVRIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTG  644 (794)
Q Consensus       565 l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~  644 (794)
                                                             .++.|+.|++++|++++ +|+.+..+++|+.|+|++|.++ 
T Consensus       189 ---------------------------------------~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~-  227 (487)
T 3oja_A          189 ---------------------------------------VFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-  227 (487)
T ss_dssp             ---------------------------------------CCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-
T ss_pred             ---------------------------------------cCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCc-
Confidence                                                   13345788888888885 4445888889999999999988 


Q ss_pred             cCCccccccCCCCEEeCCCCcCc-ccCcccccCCCCCCEEeCc
Q 046398          645 QIPENIGNLISIESLDFSTNQLS-SKISQSMSSLSFLNHLNVS  686 (794)
Q Consensus       645 ~ip~~l~~l~~L~~L~Ls~N~l~-~~~p~~l~~l~~L~~L~ls  686 (794)
                      .+|..++.+++|+.|++++|++. +.+|..+..++.|+.++++
T Consensus       228 ~lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~  270 (487)
T 3oja_A          228 LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ  270 (487)
T ss_dssp             EECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred             ccchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence            47888888889999999999888 6677778888888777776

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.91  E-value=8.5e-27  Score=269.18  Aligned_cols=89  Identities=11%  Similarity=0.056  Sum_probs=72.6

Q ss_pred             ccccceeEEEcCCCccccccChhhhc-ccCCCEEecccccccccCCccc-cccCCCCEEeCCCCcCcccCcc-cccCCCC
Q 046398          603 SILNLVRIIDVSKNNFSGEIPMELTY-LRGLQSLNLSHNIFTGQIPENI-GNLISIESLDFSTNQLSSKISQ-SMSSLSF  679 (794)
Q Consensus       603 ~~l~~L~~LdLs~N~l~~~ip~~l~~-l~~L~~L~Ls~N~l~~~ip~~l-~~l~~L~~L~Ls~N~l~~~~p~-~l~~l~~  679 (794)
                      ..+++|+.|++++ .+++..+..+.. +++|+.|+|++|.+++..+..+ ..+++|+.|+|++|++++..+. ....+++
T Consensus       429 ~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~  507 (594)
T 2p1m_B          429 EHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLET  507 (594)
T ss_dssp             HHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGG
T ss_pred             hhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCC
Confidence            3456789999987 777777777766 8999999999999987666555 6789999999999999765554 4456899


Q ss_pred             CCEEeCcCCcccc
Q 046398          680 LNHLNVSNNLLTG  692 (794)
Q Consensus       680 L~~L~ls~N~l~g  692 (794)
                      |++|++++|+++.
T Consensus       508 L~~L~l~~~~~~~  520 (594)
T 2p1m_B          508 MRSLWMSSCSVSF  520 (594)
T ss_dssp             SSEEEEESSCCBH
T ss_pred             CCEEeeeCCCCCH
Confidence            9999999999853

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.90  E-value=4.1e-23  Score=213.37  Aligned_cols=211  Identities=24%  Similarity=0.272  Sum_probs=164.3

Q ss_pred             ccceEecccccCCCCCCcccCCCCCCCEEeccCCCCCCCcchhHHhccccceeccCcccCCCCCCCEEEccCCcccccCC
Q 046398          425 QLKTLLLMSCHLGPQFPSWLHSQKNLSVLDISNARISDTIPRWFWNSIFQLSGIIPESFKNFSNLEVLNLGDNEFVGKIP  504 (794)
Q Consensus       425 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip  504 (794)
                      ++++|++++|.+++..+..+..+++|++|++++|++++               ..+..+..+++|++|++++|++++..+
T Consensus        29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~---------------~~~~~~~~l~~L~~L~L~~n~l~~~~~   93 (276)
T 2z62_A           29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT---------------IEDGAYQSLSHLSTLILTGNPIQSLAL   93 (276)
T ss_dssp             TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCE---------------ECTTTTTTCTTCCEEECTTCCCCEECT
T ss_pred             CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCc---------------cCHHHccCCcCCCEEECCCCccCccCh
Confidence            45566666666655555567777888888888887764               234567788888888888888875444


Q ss_pred             hhhhhcCCCCcEEEcccccccccCCccccCCCCCCEEEccCCcCccc-CCchhhccccccccccccCCCCcccccccccc
Q 046398          505 TWMGEGFTSLLILILRSNKFDGFLPIQLCRLTSLQILDVANNSLSGT-MPGCVNNFSAMATIDSSHQSNAMSYFEVTAYD  583 (794)
Q Consensus       505 ~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~  583 (794)
                      ..+. .+++|++|++++|++.+..+..+..+++|++|++++|++++. +|..+.++++|                     
T Consensus        94 ~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L---------------------  151 (276)
T 2z62_A           94 GAFS-GLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNL---------------------  151 (276)
T ss_dssp             TTTT-TCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTC---------------------
T ss_pred             hhhc-CCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCC---------------------
Confidence            4444 688888888888888877776788889999999999988763 56666655544                     


Q ss_pred             cccceeeEEEEeccchhhcccccceeEEEcCCCccccccChhhhcccCCC----EEecccccccccCCccccccCCCCEE
Q 046398          584 CEVLEDASIVMKGSMVEYNSILNLVRIIDVSKNNFSGEIPMELTYLRGLQ----SLNLSHNIFTGQIPENIGNLISIESL  659 (794)
Q Consensus       584 ~~~l~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~----~L~Ls~N~l~~~ip~~l~~l~~L~~L  659 (794)
                                               +.|++++|++++..+..+..+++|+    .|++++|++++..+..+ ...+|+.|
T Consensus       152 -------------------------~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~-~~~~L~~L  205 (276)
T 2z62_A          152 -------------------------EHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF-KEIRLKEL  205 (276)
T ss_dssp             -------------------------CEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSS-CSCCEEEE
T ss_pred             -------------------------CEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCcccc-CCCcccEE
Confidence                                     8889999999887777888887777    89999999996555544 44589999


Q ss_pred             eCCCCcCcccCcccccCCCCCCEEeCcCCcccccCCCCC
Q 046398          660 DFSTNQLSSKISQSMSSLSFLNHLNVSNNLLTGKIPSST  698 (794)
Q Consensus       660 ~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~~~  698 (794)
                      ++++|++++..+..+..+++|++|++++|++++..|...
T Consensus       206 ~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~l~  244 (276)
T 2z62_A          206 ALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRID  244 (276)
T ss_dssp             ECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTTTTH
T ss_pred             ECCCCceeecCHhHhcccccccEEEccCCcccccCCchH
Confidence            999999998877788999999999999999999888643

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.90  E-value=1.7e-24  Score=241.62  Aligned_cols=237  Identities=21%  Similarity=0.199  Sum_probs=166.8

Q ss_pred             CCCCCEEEccCCcCcCCCCCCcCCCCCCCEEEccCCcccccCCccccCCCCCCeEeccCcccccccChhhhcCCCCCCEE
Q 046398          326 FKSLRTLSLDDNCISGPLPPALGDLSSLTRLDLSRNMLNGSIPLSLGKISHLEYLDLSNNKMNGTLSEIHFVNLTKLTWF  405 (794)
Q Consensus       326 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L  405 (794)
                      +++|++|++++|.+++..|..+..+++|++|+|++|.+++..|  +..+++|++|++++|.+++ ++     ..++|+.|
T Consensus        33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~-----~~~~L~~L  104 (487)
T 3oja_A           33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQE-LL-----VGPSIETL  104 (487)
T ss_dssp             GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEE-EE-----ECTTCCEE
T ss_pred             CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCC-CC-----CCCCcCEE
Confidence            3467777777777766666666677777777777777665444  6666777777777776652 21     22455555


Q ss_pred             ECcCCcceeEcCCCCcCccccceEecccccCCCCCCcccCCCCCCCEEeccCCCCCCCcchhHHhccccceeccCcccCC
Q 046398          406 SASGNSLILQVNPNWVPPFQLKTLLLMSCHLGPQFPSWLHSQKNLSVLDISNARISDTIPRWFWNSIFQLSGIIPESFKN  485 (794)
Q Consensus       406 ~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~l~~~~p~~l~~  485 (794)
                      ++++|.+.+                        ..+.   .+++|+.|++++|.+++.               .|..+..
T Consensus       105 ~L~~N~l~~------------------------~~~~---~l~~L~~L~L~~N~l~~~---------------~~~~~~~  142 (487)
T 3oja_A          105 HAANNNISR------------------------VSCS---RGQGKKNIYLANNKITML---------------RDLDEGC  142 (487)
T ss_dssp             ECCSSCCCC------------------------EEEC---CCSSCEEEECCSSCCCSG---------------GGBCGGG
T ss_pred             ECcCCcCCC------------------------CCcc---ccCCCCEEECCCCCCCCC---------------CchhhcC
Confidence            555554433                        2222   245677888888877652               4455667


Q ss_pred             CCCCCEEEccCCcccccCChhhhhcCCCCcEEEcccccccccCCccccCCCCCCEEEccCCcCcccCCchhhcccccccc
Q 046398          486 FSNLEVLNLGDNEFVGKIPTWMGEGFTSLLILILRSNKFDGFLPIQLCRLTSLQILDVANNSLSGTMPGCVNNFSAMATI  565 (794)
Q Consensus       486 l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l  565 (794)
                      +++|+.|++++|.+++..|..+...+++|+.|+|++|.+++..  ....+++|++|+|++|.+++..|. +..+++    
T Consensus       143 l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~--~~~~l~~L~~L~Ls~N~l~~~~~~-~~~l~~----  215 (487)
T 3oja_A          143 RSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVK--GQVVFAKLKTLDLSSNKLAFMGPE-FQSAAG----  215 (487)
T ss_dssp             GSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEE--CCCCCTTCCEEECCSSCCCEECGG-GGGGTT----
T ss_pred             CCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccccc--ccccCCCCCEEECCCCCCCCCCHh-HcCCCC----
Confidence            7888888888888887777766656788888888888888663  244588899999999988865443 544443    


Q ss_pred             ccccCCCCcccccccccccccceeeEEEEeccchhhcccccceeEEEcCCCccccccChhhhcccCCCEEeccccccc-c
Q 046398          566 DSSHQSNAMSYFEVTAYDCEVLEDASIVMKGSMVEYNSILNLVRIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFT-G  644 (794)
Q Consensus       566 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~-~  644 (794)
                                                                |+.||+++|.+++ +|..+..+++|+.|++++|.++ +
T Consensus       216 ------------------------------------------L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~  252 (487)
T 3oja_A          216 ------------------------------------------VTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCG  252 (487)
T ss_dssp             ------------------------------------------CSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHH
T ss_pred             ------------------------------------------ccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCc
Confidence                                                      3788899999884 7778888899999999999988 7


Q ss_pred             cCCccccccCCCCEEeCC
Q 046398          645 QIPENIGNLISIESLDFS  662 (794)
Q Consensus       645 ~ip~~l~~l~~L~~L~Ls  662 (794)
                      .+|..+..++.|+.++++
T Consensus       253 ~~~~~~~~l~~L~~l~~~  270 (487)
T 3oja_A          253 TLRDFFSKNQRVQTVAKQ  270 (487)
T ss_dssp             HHHHHHTTCHHHHHHHHH
T ss_pred             chHHHHHhCCCCcEEecc
Confidence            778888888888888886

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.90  E-value=1.9e-22  Score=207.43  Aligned_cols=207  Identities=19%  Similarity=0.259  Sum_probs=171.7

Q ss_pred             ccceEecccccCCCCCCcccCCCCCCCEEeccCCCCCCCcchhHHhccccceeccCcccCCCCCCCEEEccCCcccccCC
Q 046398          425 QLKTLLLMSCHLGPQFPSWLHSQKNLSVLDISNARISDTIPRWFWNSIFQLSGIIPESFKNFSNLEVLNLGDNEFVGKIP  504 (794)
Q Consensus       425 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip  504 (794)
                      ..+.++++++.++. +|..+.  +++++|++++|++++.               .+..+..+++|++|++++|+++ .+|
T Consensus        17 ~~~~l~~~~~~l~~-ip~~~~--~~l~~L~l~~n~l~~~---------------~~~~~~~l~~L~~L~l~~n~l~-~i~   77 (270)
T 2o6q_A           17 NKNSVDCSSKKLTA-IPSNIP--ADTKKLDLQSNKLSSL---------------PSKAFHRLTKLRLLYLNDNKLQ-TLP   77 (270)
T ss_dssp             TTTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCSCC---------------CTTSSSSCTTCCEEECCSSCCS-CCC
T ss_pred             CCCEEEccCCCCCc-cCCCCC--CCCCEEECcCCCCCee---------------CHHHhcCCCCCCEEECCCCccC-eeC
Confidence            35566666666653 444332  5789999999988762               3456888999999999999998 677


Q ss_pred             hhhhhcCCCCcEEEcccccccccCCccccCCCCCCEEEccCCcCcccCCchhhccccccccccccCCCCccccccccccc
Q 046398          505 TWMGEGFTSLLILILRSNKFDGFLPIQLCRLTSLQILDVANNSLSGTMPGCVNNFSAMATIDSSHQSNAMSYFEVTAYDC  584 (794)
Q Consensus       505 ~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~  584 (794)
                      ...+..+++|++|++++|++++..+..+..+++|++|++++|++++..+..+.++++|                      
T Consensus        78 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L----------------------  135 (270)
T 2o6q_A           78 AGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKL----------------------  135 (270)
T ss_dssp             TTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTC----------------------
T ss_pred             hhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCC----------------------
Confidence            7766678999999999999998777788899999999999999987777666655544                      


Q ss_pred             ccceeeEEEEeccchhhcccccceeEEEcCCCccccccChhhhcccCCCEEecccccccccCCccccccCCCCEEeCCCC
Q 046398          585 EVLEDASIVMKGSMVEYNSILNLVRIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQIPENIGNLISIESLDFSTN  664 (794)
Q Consensus       585 ~~l~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N  664 (794)
                                              +.|++++|++++..+..+..+++|++|+|++|++++..+..|..+++|+.|+|++|
T Consensus       136 ------------------------~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N  191 (270)
T 2o6q_A          136 ------------------------TYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNN  191 (270)
T ss_dssp             ------------------------CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred             ------------------------CEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCC
Confidence                                    88999999999776667899999999999999999777777999999999999999


Q ss_pred             cCcccCcccccCCCCCCEEeCcCCcccccCCC
Q 046398          665 QLSSKISQSMSSLSFLNHLNVSNNLLTGKIPS  696 (794)
Q Consensus       665 ~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~  696 (794)
                      ++++..+..+..+++|+.|++++|++.+..+.
T Consensus       192 ~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~  223 (270)
T 2o6q_A          192 QLKRVPEGAFDSLEKLKMLQLQENPWDCTCNG  223 (270)
T ss_dssp             CCSCCCTTTTTTCTTCCEEECCSSCBCCSSSS
T ss_pred             cCCcCCHHHhccccCCCEEEecCCCeeCCCcc
Confidence            99988888899999999999999999887653

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.89  E-value=1.9e-22  Score=207.51  Aligned_cols=218  Identities=23%  Similarity=0.310  Sum_probs=134.8

Q ss_pred             CCCcceeeeEecCCCCcEEEEEcCCCCCccccccchhhhhccccccceeecccccCCCCCCEEeCCCCCCCCCCCCcccC
Q 046398           60 GDCCKWAEVVCSNLTGHVLQLSLRNPFRNDLRYATTEYEDYMRSMLSGNVNPSLVDLKHLTHLDLSGNDFQGIRIPKYLG  139 (794)
Q Consensus        60 ~~~c~w~gv~c~~~~~~v~~L~l~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~  139 (794)
                      .++|.|.|+.|.- .+.++.+++++.                  .++ .+|..+.  +++++|+|++|+++.. .+..|.
T Consensus         2 ~~~C~~~~~~C~c-~~~~~~l~~~~~------------------~l~-~ip~~~~--~~l~~L~l~~n~l~~~-~~~~~~   58 (270)
T 2o6q_A            2 EALCKKDGGVCSC-NNNKNSVDCSSK------------------KLT-AIPSNIP--ADTKKLDLQSNKLSSL-PSKAFH   58 (270)
T ss_dssp             CCCBGGGTCSBEE-ETTTTEEECTTS------------------CCS-SCCSCCC--TTCSEEECCSSCCSCC-CTTSSS
T ss_pred             CccCCCCCCCCEe-CCCCCEEEccCC------------------CCC-ccCCCCC--CCCCEEECcCCCCCee-CHHHhc
Confidence            5799999999853 234456666653                  333 2444333  4677777777777753 344677


Q ss_pred             CCCCCCEEEcCCCCCCCCCcccccCCccccccccCccccccccccccccccCCCCccCCCCCCCEEECcCCCCCCCCCcc
Q 046398          140 SLKNLRYLNLSGAEFAGIIPHQLGNLSNLRCLDLSWSEYALQVHSFSWLSGQIPNRLGNLTSLRHLDLSANKFNSTTAGW  219 (794)
Q Consensus       140 ~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~~~  219 (794)
                      .+++|++|++++|.++...+..|.++++|++|++++|.+.          +..+..+.++++|++|++++|.+++..+..
T Consensus        59 ~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~----------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~  128 (270)
T 2o6q_A           59 RLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQ----------ALPIGVFDQLVNLAELRLDRNQLKSLPPRV  128 (270)
T ss_dssp             SCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCC----------CCCTTTTTTCSSCCEEECCSSCCCCCCTTT
T ss_pred             CCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCC----------cCCHhHcccccCCCEEECCCCccCeeCHHH
Confidence            7777777777777776544445566666666666665532          222234455666666666666666655555


Q ss_pred             ccCCCCCCeEeeeccCCCCCCCccccCCCCCCcEEEccCCCCCCCCCchhhhccCCCCEEEccCCCCCcchHHHHHhhhh
Q 046398          220 LSKFNHLEFLSLSSNGLQGTISSIGLENLTSIKTIDLSLNFELGGPIPTSFVRLCELTSIDVSDVKLSQDLSQVLDILSA  299 (794)
Q Consensus       220 l~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~l~~l~~  299 (794)
                      +..+++|++|++++|.+++ ++                         +..+..++                         
T Consensus       129 ~~~l~~L~~L~Ls~n~l~~-~~-------------------------~~~~~~l~-------------------------  157 (270)
T 2o6q_A          129 FDSLTKLTYLSLGYNELQS-LP-------------------------KGVFDKLT-------------------------  157 (270)
T ss_dssp             TTTCTTCCEEECCSSCCCC-CC-------------------------TTTTTTCT-------------------------
T ss_pred             hCcCcCCCEEECCCCcCCc-cC-------------------------HhHccCCc-------------------------
Confidence            5555556666555555542 22                         22222333                         


Q ss_pred             cCcCCccEEEeecccccccccccccCCCCCCEEEccCCcCcCCCCCCcCCCCCCCEEEccCCcccc
Q 046398          300 CGASALESLVFSSSQISGHLTSQLGQFKSLRTLSLDDNCISGPLPPALGDLSSLTRLDLSRNMLNG  365 (794)
Q Consensus       300 ~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~  365 (794)
                          +|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+..
T Consensus       158 ----~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c  219 (270)
T 2o6q_A          158 ----SLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDC  219 (270)
T ss_dssp             ----TCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             ----ccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeC
Confidence                44444444444555555567777888888888888886666667788888888888888764

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.89  E-value=5e-22  Score=205.20  Aligned_cols=204  Identities=22%  Similarity=0.253  Sum_probs=115.7

Q ss_pred             CCCEEEcCCCCCCCCCcccccCCccccccccCccccccccccccccccCCCCccCCCCCCCEEECcCCCCCCCCCccccC
Q 046398          143 NLRYLNLSGAEFAGIIPHQLGNLSNLRCLDLSWSEYALQVHSFSWLSGQIPNRLGNLTSLRHLDLSANKFNSTTAGWLSK  222 (794)
Q Consensus       143 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~  222 (794)
                      +|++|++++|++++..+..+.++++|++|++++|.+.          +..+..+.++++|++|++++|.+++..+..+.+
T Consensus        29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~----------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~   98 (276)
T 2z62_A           29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ----------TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSG   98 (276)
T ss_dssp             TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCC----------EECTTTTTTCTTCCEEECTTCCCCEECTTTTTT
T ss_pred             CccEEECCCCcccccCHhHhccccCCcEEECCCCcCC----------ccCHHHccCCcCCCEEECCCCccCccChhhhcC
Confidence            4555555555555444445555555555555555422          222334555666666666666666666566666


Q ss_pred             CCCCCeEeeeccCCCCCCCccccCCCCCCcEEEccCCCCCCC-CCchhhhccCCCCEEEccCCCCCcchHHHHHhhhhcC
Q 046398          223 FNHLEFLSLSSNGLQGTISSIGLENLTSIKTIDLSLNFELGG-PIPTSFVRLCELTSIDVSDVKLSQDLSQVLDILSACG  301 (794)
Q Consensus       223 l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~~~~~~~-~~~~~l~~l~~L~~L~l~~~~l~~~~~~~l~~l~~~~  301 (794)
                      +++|++|++++|.+.+..+. .+.++++|++|+++ ++.+.+ .+|..+..+++|+.|++++|++++..+..+..+.   
T Consensus        99 l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~-~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~---  173 (276)
T 2z62_A           99 LSSLQKLVAVETNLASLENF-PIGHLKTLKELNVA-HNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLH---  173 (276)
T ss_dssp             CTTCCEEECTTSCCCCSTTC-CCTTCTTCCEEECC-SSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHH---
T ss_pred             CccccEEECCCCCccccCch-hcccCCCCCEEECc-CCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhh---
Confidence            66666666666666543332 46666666666666 444443 3567777777777777777777665555444444   


Q ss_pred             cCCcc----EEEeecccccccccccccCCCCCCEEEccCCcCcCCCCCCcCCCCCCCEEEccCCccc
Q 046398          302 ASALE----SLVFSSSQISGHLTSQLGQFKSLRTLSLDDNCISGPLPPALGDLSSLTRLDLSRNMLN  364 (794)
Q Consensus       302 ~~~L~----~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~  364 (794)
                        +++    +|++++|.+++..+..+.. .+|++|++++|.+++..+..+..+++|++|++++|.+.
T Consensus       174 --~L~~l~l~L~ls~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~  237 (276)
T 2z62_A          174 --QMPLLNLSLDLSLNPMNFIQPGAFKE-IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD  237 (276)
T ss_dssp             --TCTTCCEEEECCSSCCCEECTTSSCS-CCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBC
T ss_pred             --hccccceeeecCCCcccccCccccCC-CcccEEECCCCceeecCHhHhcccccccEEEccCCccc
Confidence              343    5666666665544433332 35666666666655444444455555555555555554

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.88  E-value=1.5e-22  Score=208.47  Aligned_cols=183  Identities=21%  Similarity=0.272  Sum_probs=141.5

Q ss_pred             cCCCCCCCEEeccCCCCCCCcchhHHhccccceeccCcccCCCCCCCEEEccCCcccccCChhhhhcCCCCcEEEccccc
Q 046398          444 LHSQKNLSVLDISNARISDTIPRWFWNSIFQLSGIIPESFKNFSNLEVLNLGDNEFVGKIPTWMGEGFTSLLILILRSNK  523 (794)
Q Consensus       444 l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~  523 (794)
                      +..+++|++|++++|++++                + ..+..+++|++|++++|+++ .++...+..+++|++|++++|+
T Consensus        59 l~~l~~L~~L~l~~n~l~~----------------~-~~l~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~  120 (272)
T 3rfs_A           59 IQYLPNVRYLALGGNKLHD----------------I-SALKELTNLTYLILTGNQLQ-SLPNGVFDKLTNLKELVLVENQ  120 (272)
T ss_dssp             GGGCTTCCEEECTTSCCCC----------------C-GGGTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECTTSC
T ss_pred             cccCCCCcEEECCCCCCCC----------------c-hhhcCCCCCCEEECCCCccC-ccChhHhcCCcCCCEEECCCCc
Confidence            5667788888888887765                2 25667888888888888887 4444443468888888888888


Q ss_pred             ccccCCccccCCCCCCEEEccCCcCcccCCchhhccccccccccccCCCCcccccccccccccceeeEEEEeccchhhcc
Q 046398          524 FDGFLPIQLCRLTSLQILDVANNSLSGTMPGCVNNFSAMATIDSSHQSNAMSYFEVTAYDCEVLEDASIVMKGSMVEYNS  603 (794)
Q Consensus       524 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  603 (794)
                      +++..+..+..+++|++|++++|++++..+..+.++++|                                         
T Consensus       121 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L-----------------------------------------  159 (272)
T 3rfs_A          121 LQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNL-----------------------------------------  159 (272)
T ss_dssp             CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC-----------------------------------------
T ss_pred             CCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccC-----------------------------------------
Confidence            887777778888888888888888886666555554444                                         


Q ss_pred             cccceeEEEcCCCccccccChhhhcccCCCEEecccccccccCCccccccCCCCEEeCCCCcCcccCcccccCCCCCCEE
Q 046398          604 ILNLVRIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQIPENIGNLISIESLDFSTNQLSSKISQSMSSLSFLNHL  683 (794)
Q Consensus       604 ~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L  683 (794)
                           +.|++++|++++..+..++.+++|++|++++|++++..|..++.+++|+.|++++|++.+..       +.|+.+
T Consensus       160 -----~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~-------~~l~~l  227 (272)
T 3rfs_A          160 -----TELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTC-------PGIRYL  227 (272)
T ss_dssp             -----CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCT-------TTTHHH
T ss_pred             -----CEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccccC-------cHHHHH
Confidence                 78888888888777777788888888888888888777777888888888888888887643       467888


Q ss_pred             eCcCCcccccCCCC
Q 046398          684 NVSNNLLTGKIPSS  697 (794)
Q Consensus       684 ~ls~N~l~g~iP~~  697 (794)
                      +++.|.++|.+|..
T Consensus       228 ~~~~n~~~g~ip~~  241 (272)
T 3rfs_A          228 SEWINKHSGVVRNS  241 (272)
T ss_dssp             HHHHHHTGGGBBCT
T ss_pred             HHHHHhCCCcccCc
Confidence            88888888888864

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.88  E-value=3.5e-22  Score=203.02  Aligned_cols=211  Identities=20%  Similarity=0.244  Sum_probs=162.7

Q ss_pred             CCCEEeccCCCCCCCcchhHHhccccceeccCcccCCCCCCCEEEccCCcccccCChhhhhcCCCCcEEEcccccccccC
Q 046398          449 NLSVLDISNARISDTIPRWFWNSIFQLSGIIPESFKNFSNLEVLNLGDNEFVGKIPTWMGEGFTSLLILILRSNKFDGFL  528 (794)
Q Consensus       449 ~L~~L~Ls~n~l~~~~p~~~~~~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~  528 (794)
                      +.++++++++.++.                +|..+.  ++++.|++++|++++..+..+. .+++|++|+|++|++++..
T Consensus        15 ~~~~l~~~~~~l~~----------------~p~~~~--~~l~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~   75 (251)
T 3m19_A           15 GKKEVDCQGKSLDS----------------VPSGIP--ADTEKLDLQSTGLATLSDATFR-GLTKLTWLNLDYNQLQTLS   75 (251)
T ss_dssp             GGTEEECTTCCCSS----------------CCSCCC--TTCCEEECTTSCCCCCCTTTTT-TCTTCCEEECTTSCCCCCC
T ss_pred             CCeEEecCCCCccc----------------cCCCCC--CCCCEEEccCCCcCccCHhHhc-CcccCCEEECCCCcCCccC
Confidence            46778888888775                444443  5889999999999855554444 7899999999999999888


Q ss_pred             CccccCCCCCCEEEccCCcCcccCCchhhccccccccccccCCCCcccccccccccccceeeEEEEeccchhhcccccce
Q 046398          529 PIQLCRLTSLQILDVANNSLSGTMPGCVNNFSAMATIDSSHQSNAMSYFEVTAYDCEVLEDASIVMKGSMVEYNSILNLV  608 (794)
Q Consensus       529 p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L  608 (794)
                      +..|..+++|++|++++|++++..+..+..+++|                                              
T Consensus        76 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L----------------------------------------------  109 (251)
T 3m19_A           76 AGVFDDLTELGTLGLANNQLASLPLGVFDHLTQL----------------------------------------------  109 (251)
T ss_dssp             TTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTC----------------------------------------------
T ss_pred             HhHhccCCcCCEEECCCCcccccChhHhcccCCC----------------------------------------------
Confidence            8889999999999999999987766666555444                                              


Q ss_pred             eEEEcCCCccccccChhhhcccCCCEEecccccccccCCccccccCCCCEEeCCCCcCcccCcccccCCCCCCEEeCcCC
Q 046398          609 RIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQIPENIGNLISIESLDFSTNQLSSKISQSMSSLSFLNHLNVSNN  688 (794)
Q Consensus       609 ~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N  688 (794)
                      ++|++++|++++..+..+..+++|++|+|++|++++..+..|+.+++|+.|+|++|++++..+..+..+++|++|++++|
T Consensus       110 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N  189 (251)
T 3m19_A          110 DKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN  189 (251)
T ss_dssp             CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSC
T ss_pred             CEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCC
Confidence            88999999999777777899999999999999999777778999999999999999999988889999999999999999


Q ss_pred             cccccCCCCCccCc------cCcccccCCCcCCCCCC-CCCCC
Q 046398          689 LLTGKIPSSTQLQS------FDASCFVGNNLCGPPLP-SCTEN  724 (794)
Q Consensus       689 ~l~g~iP~~~~~~~------~~~~~~~gn~lcg~~~~-~c~~~  724 (794)
                      ++++..+....+..      .......|+.+++.|.. .|...
T Consensus       190 ~~~c~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~  232 (251)
T 3m19_A          190 QFDCSRCEILYLSQWIRENSNKVKDGTGQNLHESPDGVTCSDG  232 (251)
T ss_dssp             CBCTTSTTHHHHHHHHHHSGGGBCC-------CCGGGCBBTTS
T ss_pred             ceeCCccccHHHHHHHHhcccceeeccCcccccCCCcCccCCC
Confidence            99988554322211      11222445667776655 66543

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.87  E-value=2.1e-21  Score=201.29  Aligned_cols=180  Identities=21%  Similarity=0.247  Sum_probs=129.1

Q ss_pred             CCCCEEeccCCCCCCCcchhHHhccccceeccCcccCCCCCCCEEEccCCcccccCChhhhhcCCCCcEEEccccccccc
Q 046398          448 KNLSVLDISNARISDTIPRWFWNSIFQLSGIIPESFKNFSNLEVLNLGDNEFVGKIPTWMGEGFTSLLILILRSNKFDGF  527 (794)
Q Consensus       448 ~~L~~L~Ls~n~l~~~~p~~~~~~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~  527 (794)
                      ++++.|++++|++++               ..+..+..+++|++|++++|++++ ++..  ..+++|+.|++++|+++ .
T Consensus        31 ~~l~~L~L~~N~l~~---------------~~~~~~~~l~~L~~L~L~~n~l~~-~~~~--~~l~~L~~L~Ls~N~l~-~   91 (290)
T 1p9a_G           31 KDTTILHLSENLLYT---------------FSLATLMPYTRLTQLNLDRAELTK-LQVD--GTLPVLGTLDLSHNQLQ-S   91 (290)
T ss_dssp             TTCCEEECTTSCCSE---------------EEGGGGTTCTTCCEEECTTSCCCE-EECC--SCCTTCCEEECCSSCCS-S
T ss_pred             CCCCEEEcCCCcCCc---------------cCHHHhhcCCCCCEEECCCCccCc-ccCC--CCCCcCCEEECCCCcCC-c
Confidence            467777777776654               234556677777777777777763 4332  25777777777777776 4


Q ss_pred             CCccccCCCCCCEEEccCCcCcccCCchhhccccccccccccCCCCcccccccccccccceeeEEEEeccchhhcccccc
Q 046398          528 LPIQLCRLTSLQILDVANNSLSGTMPGCVNNFSAMATIDSSHQSNAMSYFEVTAYDCEVLEDASIVMKGSMVEYNSILNL  607 (794)
Q Consensus       528 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~  607 (794)
                      +|..+..+++|++|++++|++++..|..|.++++|                                             
T Consensus        92 l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L---------------------------------------------  126 (290)
T 1p9a_G           92 LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGEL---------------------------------------------  126 (290)
T ss_dssp             CCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTC---------------------------------------------
T ss_pred             CchhhccCCCCCEEECCCCcCcccCHHHHcCCCCC---------------------------------------------
Confidence            56667777788888888887776665656554444                                             


Q ss_pred             eeEEEcCCCccccccChhhhcccCCCEEecccccccccCCccccccCCCCEEeCCCCcCcccCcccccCCCCCCEEeCcC
Q 046398          608 VRIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQIPENIGNLISIESLDFSTNQLSSKISQSMSSLSFLNHLNVSN  687 (794)
Q Consensus       608 L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~  687 (794)
                       +.|++++|++++..+..+..+++|+.|+|++|++++..+..+..+++|+.|+|++|+++ .+|..+..+++|+.+++++
T Consensus       127 -~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~  204 (290)
T 1p9a_G          127 -QELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHG  204 (290)
T ss_dssp             -CEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCS
T ss_pred             -CEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCC
Confidence             77788888887666666777888888888888888555555677888888888888887 5677777777888888888


Q ss_pred             Cccccc
Q 046398          688 NLLTGK  693 (794)
Q Consensus       688 N~l~g~  693 (794)
                      |++...
T Consensus       205 Np~~C~  210 (290)
T 1p9a_G          205 NPWLCN  210 (290)
T ss_dssp             CCBCCS
T ss_pred             CCccCc
Confidence            887654

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.87  E-value=2.9e-23  Score=223.29  Aligned_cols=173  Identities=21%  Similarity=0.216  Sum_probs=91.0

Q ss_pred             CCCCEEeccCCCCCCCcchhHHhccccceeccCcccCC-CCCCCEEEccCCcccccCChhhhh---cCC-CCcEEEcccc
Q 046398          448 KNLSVLDISNARISDTIPRWFWNSIFQLSGIIPESFKN-FSNLEVLNLGDNEFVGKIPTWMGE---GFT-SLLILILRSN  522 (794)
Q Consensus       448 ~~L~~L~Ls~n~l~~~~p~~~~~~~~~l~~~~p~~l~~-l~~L~~L~Ls~n~l~~~ip~~~~~---~l~-~L~~L~L~~n  522 (794)
                      ++|++|++++|++++..+..+           ...+.. .++|++|++++|++++..+..+..   ..+ +|++|+|++|
T Consensus       109 ~~L~~L~Ls~N~l~~~~~~~l-----------~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n  177 (362)
T 3goz_A          109 FTITVLDLGWNDFSSKSSSEF-----------KQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGN  177 (362)
T ss_dssp             TTCCEEECCSSCGGGSCHHHH-----------HHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTS
T ss_pred             CCccEEECcCCcCCcHHHHHH-----------HHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCC
Confidence            456666666666655333221           122334 357888888888887543333221   233 7777777777


Q ss_pred             cccccCCcccc----CC-CCCCEEEccCCcCcccCCchhhccccccccccccCCCCcccccccccccccceeeEEEEecc
Q 046398          523 KFDGFLPIQLC----RL-TSLQILDVANNSLSGTMPGCVNNFSAMATIDSSHQSNAMSYFEVTAYDCEVLEDASIVMKGS  597 (794)
Q Consensus       523 ~l~~~~p~~~~----~l-~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  597 (794)
                      ++++..+..+.    .+ ++|++|||++|++++.....+..                                       
T Consensus       178 ~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~---------------------------------------  218 (362)
T 3goz_A          178 NLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAY---------------------------------------  218 (362)
T ss_dssp             CGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHH---------------------------------------
T ss_pred             CCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHH---------------------------------------
Confidence            77765554333    33 47777777777766421111100                                       


Q ss_pred             chhhcccccceeEEEcCCCccccccChh----hhcccCCCEEeccccccccc-------CCccccccCCCCEEeCCCCcC
Q 046398          598 MVEYNSILNLVRIIDVSKNNFSGEIPME----LTYLRGLQSLNLSHNIFTGQ-------IPENIGNLISIESLDFSTNQL  666 (794)
Q Consensus       598 ~~~~~~~l~~L~~LdLs~N~l~~~ip~~----l~~l~~L~~L~Ls~N~l~~~-------ip~~l~~l~~L~~L~Ls~N~l  666 (794)
                        ......+.|+.||+++|++++..+..    +..+++|++|+|++|.+.+.       +++.+.++++|+.||+++|++
T Consensus       219 --~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l  296 (362)
T 3goz_A          219 --IFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEI  296 (362)
T ss_dssp             --HHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBC
T ss_pred             --HHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcC
Confidence              00000124466677777666543322    34456666666666664322       223445555566666666666


Q ss_pred             cccCcc
Q 046398          667 SSKISQ  672 (794)
Q Consensus       667 ~~~~p~  672 (794)
                      ....+.
T Consensus       297 ~~~~~~  302 (362)
T 3goz_A          297 HPSHSI  302 (362)
T ss_dssp             CGGGCH
T ss_pred             CCcchH
Confidence            554443

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.87  E-value=2.5e-21  Score=199.28  Aligned_cols=188  Identities=20%  Similarity=0.276  Sum_probs=166.0

Q ss_pred             cCCCCCCCEEeccCCCCCCCcchhHHhccccceeccCcccCCCCCCCEEEccCCcccccCChhhhhcCCCCcEEEccccc
Q 046398          444 LHSQKNLSVLDISNARISDTIPRWFWNSIFQLSGIIPESFKNFSNLEVLNLGDNEFVGKIPTWMGEGFTSLLILILRSNK  523 (794)
Q Consensus       444 l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~  523 (794)
                      ...+++|+.|++++|.++.                + ..+..+++|++|++++|++++ ++ .+. .+++|++|++++|+
T Consensus        37 ~~~l~~L~~L~l~~~~i~~----------------~-~~l~~l~~L~~L~l~~n~l~~-~~-~l~-~l~~L~~L~L~~n~   96 (272)
T 3rfs_A           37 QNELNSIDQIIANNSDIKS----------------V-QGIQYLPNVRYLALGGNKLHD-IS-ALK-ELTNLTYLILTGNQ   96 (272)
T ss_dssp             HHHHTTCCEEECTTSCCCC----------------C-TTGGGCTTCCEEECTTSCCCC-CG-GGT-TCTTCCEEECTTSC
T ss_pred             cccccceeeeeeCCCCccc----------------c-cccccCCCCcEEECCCCCCCC-ch-hhc-CCCCCCEEECCCCc
Confidence            4557889999999998875                2 347789999999999999984 44 444 79999999999999


Q ss_pred             ccccCCccccCCCCCCEEEccCCcCcccCCchhhccccccccccccCCCCcccccccccccccceeeEEEEeccchhhcc
Q 046398          524 FDGFLPIQLCRLTSLQILDVANNSLSGTMPGCVNNFSAMATIDSSHQSNAMSYFEVTAYDCEVLEDASIVMKGSMVEYNS  603 (794)
Q Consensus       524 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  603 (794)
                      +++..+..+..+++|++|++++|++++..+..+.++++|                                         
T Consensus        97 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L-----------------------------------------  135 (272)
T 3rfs_A           97 LQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNL-----------------------------------------  135 (272)
T ss_dssp             CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTC-----------------------------------------
T ss_pred             cCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCC-----------------------------------------
Confidence            998888889999999999999999997777666665554                                         


Q ss_pred             cccceeEEEcCCCccccccChhhhcccCCCEEecccccccccCCccccccCCCCEEeCCCCcCcccCcccccCCCCCCEE
Q 046398          604 ILNLVRIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQIPENIGNLISIESLDFSTNQLSSKISQSMSSLSFLNHL  683 (794)
Q Consensus       604 ~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L  683 (794)
                           +.|++++|++++..+..++.+++|++|++++|++++..|..++.+++|+.|++++|++++..|..+..+++|++|
T Consensus       136 -----~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L  210 (272)
T 3rfs_A          136 -----TYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYI  210 (272)
T ss_dssp             -----CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEE
T ss_pred             -----CEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEE
Confidence                 899999999998777778999999999999999998777888999999999999999999988889999999999


Q ss_pred             eCcCCcccccCCCC
Q 046398          684 NVSNNLLTGKIPSS  697 (794)
Q Consensus       684 ~ls~N~l~g~iP~~  697 (794)
                      ++++|++.|.+|..
T Consensus       211 ~l~~N~~~~~~~~l  224 (272)
T 3rfs_A          211 WLHDNPWDCTCPGI  224 (272)
T ss_dssp             ECCSSCBCCCTTTT
T ss_pred             EccCCCccccCcHH
Confidence            99999999998853

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.87  E-value=3e-21  Score=200.15  Aligned_cols=179  Identities=20%  Similarity=0.176  Sum_probs=148.1

Q ss_pred             ccceEecccccCCCCCCcccCCCCCCCEEeccCCCCCCCcchhHHhccccceeccCcccCCCCCCCEEEccCCcccccCC
Q 046398          425 QLKTLLLMSCHLGPQFPSWLHSQKNLSVLDISNARISDTIPRWFWNSIFQLSGIIPESFKNFSNLEVLNLGDNEFVGKIP  504 (794)
Q Consensus       425 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip  504 (794)
                      .++.|++++|.+++..+..+..+++|++|++++|.+++                ++. ...+++|++|++++|+++ .+|
T Consensus        32 ~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~----------------~~~-~~~l~~L~~L~Ls~N~l~-~l~   93 (290)
T 1p9a_G           32 DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK----------------LQV-DGTLPVLGTLDLSHNQLQ-SLP   93 (290)
T ss_dssp             TCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE----------------EEC-CSCCTTCCEEECCSSCCS-SCC
T ss_pred             CCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCc----------------ccC-CCCCCcCCEEECCCCcCC-cCc
Confidence            55566666666665666778888899999999998875                222 267889999999999998 788


Q ss_pred             hhhhhcCCCCcEEEcccccccccCCccccCCCCCCEEEccCCcCcccCCchhhccccccccccccCCCCccccccccccc
Q 046398          505 TWMGEGFTSLLILILRSNKFDGFLPIQLCRLTSLQILDVANNSLSGTMPGCVNNFSAMATIDSSHQSNAMSYFEVTAYDC  584 (794)
Q Consensus       505 ~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~  584 (794)
                      ..+. .+++|++|++++|++++..+..|..+++|++|++++|++++..+..|..+++|                      
T Consensus        94 ~~~~-~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L----------------------  150 (290)
T 1p9a_G           94 LLGQ-TLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKL----------------------  150 (290)
T ss_dssp             CCTT-TCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTC----------------------
T ss_pred             hhhc-cCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCC----------------------
Confidence            7665 78999999999999998888889999999999999999987666666554444                      


Q ss_pred             ccceeeEEEEeccchhhcccccceeEEEcCCCccccccChhhhcccCCCEEecccccccccCCccccccCCCCEEeCCCC
Q 046398          585 EVLEDASIVMKGSMVEYNSILNLVRIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQIPENIGNLISIESLDFSTN  664 (794)
Q Consensus       585 ~~l~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N  664 (794)
                                              +.|++++|++++..+..+..+++|+.|+|++|+++ .+|..+..+++|+.|+|++|
T Consensus       151 ------------------------~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~N  205 (290)
T 1p9a_G          151 ------------------------EKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGN  205 (290)
T ss_dssp             ------------------------CEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSC
T ss_pred             ------------------------CEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCC
Confidence                                    88999999999666666788999999999999999 88999999999999999999


Q ss_pred             cCccc
Q 046398          665 QLSSK  669 (794)
Q Consensus       665 ~l~~~  669 (794)
                      ++...
T Consensus       206 p~~C~  210 (290)
T 1p9a_G          206 PWLCN  210 (290)
T ss_dssp             CBCCS
T ss_pred             CccCc
Confidence            98753

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.86  E-value=3.1e-23  Score=225.44  Aligned_cols=252  Identities=14%  Similarity=0.207  Sum_probs=184.9

Q ss_pred             cCCccccCCCCCCeEeccCcccccccChh---hhcCCCCCCEEECcCCcceeEcCCCCcCccccceEecccccCCCCCCc
Q 046398          366 SIPLSLGKISHLEYLDLSNNKMNGTLSEI---HFVNLTKLTWFSASGNSLILQVNPNWVPPFQLKTLLLMSCHLGPQFPS  442 (794)
Q Consensus       366 ~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~---~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~  442 (794)
                      .++..+..+++|++|++++|.+.+..+..   .+..+++|+.|++++|.+.                     .+.+.+|.
T Consensus        23 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~---------------------~l~~~~~~   81 (386)
T 2ca6_A           23 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTG---------------------RVKDEIPE   81 (386)
T ss_dssp             TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTT---------------------SCGGGSHH
T ss_pred             HHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccC---------------------ccccchhH
Confidence            45667777888888888888887543221   2456677777777765331                     22223333


Q ss_pred             c-------cCCCCCCCEEeccCCCCCCCcchhHHhccccceeccCcccCCCCCCCEEEccCCcccccCChhhhh---cC-
Q 046398          443 W-------LHSQKNLSVLDISNARISDTIPRWFWNSIFQLSGIIPESFKNFSNLEVLNLGDNEFVGKIPTWMGE---GF-  511 (794)
Q Consensus       443 ~-------l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~---~l-  511 (794)
                      .       +..+++|++|++++|.+++.-..           .+|..+..+++|++|+|++|.+++..+..+..   .+ 
T Consensus        82 ~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~-----------~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~  150 (386)
T 2ca6_A           82 ALRLLLQALLKCPKLHTVRLSDNAFGPTAQE-----------PLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELA  150 (386)
T ss_dssp             HHHHHHHHHTTCTTCCEEECCSCCCCTTTHH-----------HHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhCCcccEEECCCCcCCHHHHH-----------HHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHh
Confidence            3       36788899999999988763111           24455667889999999999887544443332   22 


Q ss_pred             --------CCCcEEEccccccc-ccCC---ccccCCCCCCEEEccCCcCccc-----CCchhhccccccccccccCCCCc
Q 046398          512 --------TSLLILILRSNKFD-GFLP---IQLCRLTSLQILDVANNSLSGT-----MPGCVNNFSAMATIDSSHQSNAM  574 (794)
Q Consensus       512 --------~~L~~L~L~~n~l~-~~~p---~~~~~l~~L~~L~Ls~N~l~~~-----~p~~~~~l~~L~~l~~~~~~~~~  574 (794)
                              ++|++|++++|+++ +.++   ..+..+++|++|++++|+++..     .|..+.                 
T Consensus       151 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~-----------------  213 (386)
T 2ca6_A          151 VNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLA-----------------  213 (386)
T ss_dssp             HHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGG-----------------
T ss_pred             hhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhh-----------------
Confidence                    89999999999987 3344   4667888999999999988621     121222                 


Q ss_pred             ccccccccccccceeeEEEEeccchhhcccccceeEEEcCCCccc----cccChhhhcccCCCEEeccccccccc----C
Q 046398          575 SYFEVTAYDCEVLEDASIVMKGSMVEYNSILNLVRIIDVSKNNFS----GEIPMELTYLRGLQSLNLSHNIFTGQ----I  646 (794)
Q Consensus       575 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~----~~ip~~l~~l~~L~~L~Ls~N~l~~~----i  646 (794)
                                                   .++.|+.|+|++|.++    +.+|..+..+++|++|+|++|++++.    +
T Consensus       214 -----------------------------~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l  264 (386)
T 2ca6_A          214 -----------------------------YCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAV  264 (386)
T ss_dssp             -----------------------------GCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHH
T ss_pred             -----------------------------cCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHH
Confidence                                         2455689999999996    67888999999999999999999876    5


Q ss_pred             Ccccc--ccCCCCEEeCCCCcCcc----cCcccc-cCCCCCCEEeCcCCcccccCC
Q 046398          647 PENIG--NLISIESLDFSTNQLSS----KISQSM-SSLSFLNHLNVSNNLLTGKIP  695 (794)
Q Consensus       647 p~~l~--~l~~L~~L~Ls~N~l~~----~~p~~l-~~l~~L~~L~ls~N~l~g~iP  695 (794)
                      |..+.  .+++|+.|+|++|.+++    .+|..+ .++++|++|++++|++++..|
T Consensus       265 ~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~  320 (386)
T 2ca6_A          265 VDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD  320 (386)
T ss_dssp             HHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred             HHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence            67774  48999999999999998    588877 668999999999999998875

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.85  E-value=3.9e-22  Score=212.53  Aligned_cols=251  Identities=19%  Similarity=0.238  Sum_probs=164.4

Q ss_pred             CCCEEEccCCcccccCCccccCC--CCCCeEeccCcccccccChhhhcCCCCCCEEECcCCcceeEcCCCCcCccccceE
Q 046398          352 SLTRLDLSRNMLNGSIPLSLGKI--SHLEYLDLSNNKMNGTLSEIHFVNLTKLTWFSASGNSLILQVNPNWVPPFQLKTL  429 (794)
Q Consensus       352 ~L~~L~Ls~n~l~~~~p~~l~~l--~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L  429 (794)
                      .++.+++++|.+.   +..+..+  ++++.|++++|.+.+..+.  +..++                        +|++|
T Consensus        48 ~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~--~~~~~------------------------~L~~L   98 (336)
T 2ast_B           48 LWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE--HFSPF------------------------RVQHM   98 (336)
T ss_dssp             TSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS--CCCCB------------------------CCCEE
T ss_pred             hheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh--hccCC------------------------CCCEE
Confidence            3667777777665   2334444  5666777766666544332  22334                        44444


Q ss_pred             ecccccCCCC-CCcccCCCCCCCEEeccCCCCCCCcchhHHhccccceeccCcccCCCCCCCEEEccCC-ccccc-CChh
Q 046398          430 LLMSCHLGPQ-FPSWLHSQKNLSVLDISNARISDTIPRWFWNSIFQLSGIIPESFKNFSNLEVLNLGDN-EFVGK-IPTW  506 (794)
Q Consensus       430 ~L~~n~l~~~-~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~l~~~~p~~l~~l~~L~~L~Ls~n-~l~~~-ip~~  506 (794)
                      ++++|.+.+. ++..+..+++|++|++++|++++.               .+..+..+++|++|++++| .+++. ++..
T Consensus        99 ~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~---------------~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~  163 (336)
T 2ast_B           99 DLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDP---------------IVNTLAKNSNLVRLNLSGCSGFSEFALQTL  163 (336)
T ss_dssp             ECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHH---------------HHHHHTTCTTCSEEECTTCBSCCHHHHHHH
T ss_pred             EccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHH---------------HHHHHhcCCCCCEEECCCCCCCCHHHHHHH
Confidence            5555544433 555667778888888888876653               3445667788888888888 56653 4444


Q ss_pred             hhhcCCCCcEEEcccc-ccccc-CCccccCCC-CCCEEEccCCc--Cc-ccCCchhhccccccccccccCCCCccccccc
Q 046398          507 MGEGFTSLLILILRSN-KFDGF-LPIQLCRLT-SLQILDVANNS--LS-GTMPGCVNNFSAMATIDSSHQSNAMSYFEVT  580 (794)
Q Consensus       507 ~~~~l~~L~~L~L~~n-~l~~~-~p~~~~~l~-~L~~L~Ls~N~--l~-~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~  580 (794)
                      +. .+++|++|++++| .+++. ++..+..++ +|++|++++|.  ++ +.+|..+.+                      
T Consensus       164 ~~-~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~----------------------  220 (336)
T 2ast_B          164 LS-SCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRR----------------------  220 (336)
T ss_dssp             HH-HCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHH----------------------
T ss_pred             Hh-cCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhh----------------------
Confidence            43 6888888888888 77754 466677788 88888888883  43 233333333                      


Q ss_pred             ccccccceeeEEEEeccchhhcccccceeEEEcCCCc-cccccChhhhcccCCCEEeccccc-ccccCCccccccCCCCE
Q 046398          581 AYDCEVLEDASIVMKGSMVEYNSILNLVRIIDVSKNN-FSGEIPMELTYLRGLQSLNLSHNI-FTGQIPENIGNLISIES  658 (794)
Q Consensus       581 ~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~-l~~~ip~~l~~l~~L~~L~Ls~N~-l~~~ip~~l~~l~~L~~  658 (794)
                                              +++|+.|++++|. +++..+..+..+++|++|++++|. ++......++++++|+.
T Consensus       221 ------------------------~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~  276 (336)
T 2ast_B          221 ------------------------CPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKT  276 (336)
T ss_dssp             ------------------------CTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCE
T ss_pred             ------------------------CCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCE
Confidence                                    3445788888888 777777788888888888888885 33222235778888888


Q ss_pred             EeCCCCcCcccCcccccCC-CCCCEEeCcCCcccccCCCC
Q 046398          659 LDFSTNQLSSKISQSMSSL-SFLNHLNVSNNLLTGKIPSS  697 (794)
Q Consensus       659 L~Ls~N~l~~~~p~~l~~l-~~L~~L~ls~N~l~g~iP~~  697 (794)
                      |++++| ++.   ..+..+ ..+..|++++|++++..|..
T Consensus       277 L~l~~~-i~~---~~~~~l~~~l~~L~l~~n~l~~~~~~~  312 (336)
T 2ast_B          277 LQVFGI-VPD---GTLQLLKEALPHLQINCSHFTTIARPT  312 (336)
T ss_dssp             EECTTS-SCT---TCHHHHHHHSTTSEESCCCSCCTTCSS
T ss_pred             EeccCc-cCH---HHHHHHHhhCcceEEecccCccccCCc
Confidence            888888 433   233333 23677778888888887753

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.85  E-value=4.2e-23  Score=220.06  Aligned_cols=266  Identities=20%  Similarity=0.207  Sum_probs=170.3

Q ss_pred             CCCCcceeeeEecCCCCcEEEEEcCCCCCccccccchhhhhccccccceeecccccCC--CCCCEEeCCCCCCCCCCCCc
Q 046398           59 DGDCCKWAEVVCSNLTGHVLQLSLRNPFRNDLRYATTEYEDYMRSMLSGNVNPSLVDL--KHLTHLDLSGNDFQGIRIPK  136 (794)
Q Consensus        59 ~~~~c~w~gv~c~~~~~~v~~L~l~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~l~~l--~~L~~L~Ls~n~l~~~~~p~  136 (794)
                      +.-|.+|.++.|+  ...++.+++++.                  .+.   +..+.++  +++++|++++|.+.+.  +.
T Consensus        33 ~~vc~~W~~~~~~--~~~~~~l~l~~~------------------~~~---~~~~~~~~~~~l~~L~l~~n~l~~~--~~   87 (336)
T 2ast_B           33 SGVCKRWYRLASD--ESLWQTLDLTGK------------------NLH---PDVTGRLLSQGVIAFRCPRSFMDQP--LA   87 (336)
T ss_dssp             TSSCHHHHHHHTC--STTSSEEECTTC------------------BCC---HHHHHHHHHTTCSEEECTTCEECSC--CC
T ss_pred             HHHHHHHHHHhcC--chhheeeccccc------------------cCC---HHHHHhhhhccceEEEcCCcccccc--ch
Confidence            3456679998875  335777888774                  333   3345555  7889999999888863  33


Q ss_pred             ccCCCCCCCEEEcCCCCCCCC-CcccccCCccccccccCccccccccccccccccCCCCccCCCCCCCEEECcCC-CCCC
Q 046398          137 YLGSLKNLRYLNLSGAEFAGI-IPHQLGNLSNLRCLDLSWSEYALQVHSFSWLSGQIPNRLGNLTSLRHLDLSAN-KFNS  214 (794)
Q Consensus       137 ~~~~l~~L~~L~Ls~n~l~~~-~p~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~~~~lp~~l~~l~~L~~L~Ls~n-~l~~  214 (794)
                      .+..+++|++|++++|.+++. +|..+..+++|++|++++|.+          .+..|..++++++|++|++++| .+++
T Consensus        88 ~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l----------~~~~~~~l~~~~~L~~L~L~~~~~l~~  157 (336)
T 2ast_B           88 EHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRL----------SDPIVNTLAKNSNLVRLNLSGCSGFSE  157 (336)
T ss_dssp             SCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBC----------CHHHHHHHTTCTTCSEEECTTCBSCCH
T ss_pred             hhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCccc----------CHHHHHHHhcCCCCCEEECCCCCCCCH
Confidence            456788899999988887755 677777777777777776652          3344556666777777777777 4554


Q ss_pred             C-CCccccCCCCCCeEeeecc-CCCCCCCccccCCCCCCcEEEccCCCCCCCCCchhhhccC-CCCEEEccCC--CCC-c
Q 046398          215 T-TAGWLSKFNHLEFLSLSSN-GLQGTISSIGLENLTSIKTIDLSLNFELGGPIPTSFVRLC-ELTSIDVSDV--KLS-Q  288 (794)
Q Consensus       215 ~-~~~~l~~l~~L~~L~L~~n-~l~~~i~~~~l~~l~~L~~L~L~~~~~~~~~~~~~l~~l~-~L~~L~l~~~--~l~-~  288 (794)
                      . .+..+..+++|++|++++| .+++.                         .++..+..++ +|+.|++++|  .++ +
T Consensus       158 ~~l~~~~~~~~~L~~L~l~~~~~l~~~-------------------------~~~~~~~~l~~~L~~L~l~~~~~~~~~~  212 (336)
T 2ast_B          158 FALQTLLSSCSRLDELNLSWCFDFTEK-------------------------HVQVAVAHVSETITQLNLSGYRKNLQKS  212 (336)
T ss_dssp             HHHHHHHHHCTTCCEEECCCCTTCCHH-------------------------HHHHHHHHSCTTCCEEECCSCGGGSCHH
T ss_pred             HHHHHHHhcCCCCCEEcCCCCCCcChH-------------------------HHHHHHHhcccCCCEEEeCCCcccCCHH
Confidence            2 3444555666666666665 44421                         1344455566 6666666666  344 3


Q ss_pred             chHHHHHhhhhcCcCCccEEEeeccc-ccccccccccCCCCCCEEEccCCc-CcCCCCCCcCCCCCCCEEEccCCccccc
Q 046398          289 DLSQVLDILSACGASALESLVFSSSQ-ISGHLTSQLGQFKSLRTLSLDDNC-ISGPLPPALGDLSSLTRLDLSRNMLNGS  366 (794)
Q Consensus       289 ~~~~~l~~l~~~~~~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~L~L~~n~-l~~~~p~~l~~l~~L~~L~Ls~n~l~~~  366 (794)
                      .++..+..++     +|++|++++|. +++..+..+..+++|++|++++|. +.......+.++++|++|++++| ++..
T Consensus       213 ~l~~~~~~~~-----~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~  286 (336)
T 2ast_B          213 DLSTLVRRCP-----NLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDG  286 (336)
T ss_dssp             HHHHHHHHCT-----TCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTT
T ss_pred             HHHHHHhhCC-----CCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCHH
Confidence            3444444444     77777777777 666666677778888888888874 22221224667888888888887 4322


Q ss_pred             CCccccCC-CCCCeEeccCcccccccCh
Q 046398          367 IPLSLGKI-SHLEYLDLSNNKMNGTLSE  393 (794)
Q Consensus       367 ~p~~l~~l-~~L~~L~Ls~N~l~~~~~~  393 (794)
                         .+..+ .+++.|++++|++++..|.
T Consensus       287 ---~~~~l~~~l~~L~l~~n~l~~~~~~  311 (336)
T 2ast_B          287 ---TLQLLKEALPHLQINCSHFTTIARP  311 (336)
T ss_dssp             ---CHHHHHHHSTTSEESCCCSCCTTCS
T ss_pred             ---HHHHHHhhCcceEEecccCccccCC
Confidence               22223 3466777888888876665

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.85  E-value=1.5e-21  Score=205.06  Aligned_cols=207  Identities=21%  Similarity=0.203  Sum_probs=135.2

Q ss_pred             cceEecccccCCCCCCccc--CCCCCCCEEeccCCCCCCCcchhHHhccccceeccCcccCCCCCCCEEEccCCcccccC
Q 046398          426 LKTLLLMSCHLGPQFPSWL--HSQKNLSVLDISNARISDTIPRWFWNSIFQLSGIIPESFKNFSNLEVLNLGDNEFVGKI  503 (794)
Q Consensus       426 L~~L~L~~n~l~~~~~~~l--~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~i  503 (794)
                      |++|++++|.+.+..|..+  ..+++|++|++++|++++..+..           ....+..+++|++|++++|++++..
T Consensus        93 L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~-----------~~~~~~~~~~L~~L~Ls~n~l~~~~  161 (310)
T 4glp_A           93 LKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWL-----------AELQQWLKPGLKVLSIAQAHSPAFS  161 (310)
T ss_dssp             CCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSH-----------HHHHTTBCSCCCEEEEECCSSCCCC
T ss_pred             eeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhh-----------HHHHhhhccCCCEEEeeCCCcchhh
Confidence            4444444444444555554  56667777777777766532210           0022335677777777777776444


Q ss_pred             ChhhhhcCCCCcEEEccccccccc--C--CccccCCCCCCEEEccCCcCcccCCchhhccccccccccccCCCCcccccc
Q 046398          504 PTWMGEGFTSLLILILRSNKFDGF--L--PIQLCRLTSLQILDVANNSLSGTMPGCVNNFSAMATIDSSHQSNAMSYFEV  579 (794)
Q Consensus       504 p~~~~~~l~~L~~L~L~~n~l~~~--~--p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~  579 (794)
                      |..+. .+++|++|+|++|++.+.  +  +..+..+++|++|++++|+++. ++....                      
T Consensus       162 ~~~~~-~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~----------------------  217 (310)
T 4glp_A          162 CEQVR-AFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCA----------------------  217 (310)
T ss_dssp             TTSCC-CCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHH----------------------
T ss_pred             HHHhc-cCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHH----------------------
Confidence            44433 577777777777776542  1  2233567788888888887752 111100                      


Q ss_pred             cccccccceeeEEEEeccchhhcccccceeEEEcCCCccccccChhhhcc---cCCCEEecccccccccCCccccccCCC
Q 046398          580 TAYDCEVLEDASIVMKGSMVEYNSILNLVRIIDVSKNNFSGEIPMELTYL---RGLQSLNLSHNIFTGQIPENIGNLISI  656 (794)
Q Consensus       580 ~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l---~~L~~L~Ls~N~l~~~ip~~l~~l~~L  656 (794)
                                          .....++.|+.||+++|++++.+|..+..+   ++|++|+|++|+++ .+|..+.  ++|
T Consensus       218 --------------------~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L  274 (310)
T 4glp_A          218 --------------------ALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKL  274 (310)
T ss_dssp             --------------------HHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCC
T ss_pred             --------------------HHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCC
Confidence                                001123445888888898888778777776   68999999999998 7787775  789


Q ss_pred             CEEeCCCCcCcccCcccccCCCCCCEEeCcCCcccc
Q 046398          657 ESLDFSTNQLSSKISQSMSSLSFLNHLNVSNNLLTG  692 (794)
Q Consensus       657 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g  692 (794)
                      +.|||++|++++. |. +..+++|+.|++++|+++.
T Consensus       275 ~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~~  308 (310)
T 4glp_A          275 RVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFLV  308 (310)
T ss_dssp             SCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTSC
T ss_pred             CEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCCC
Confidence            9999999999874 33 6778889999999998874

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.85  E-value=5.4e-23  Score=223.50  Aligned_cols=252  Identities=16%  Similarity=0.206  Sum_probs=185.8

Q ss_pred             CCCCCcCCCCCCCEEEccCCcccccCC----ccccCCCCCCeEeccCcc---cccccChhh------hcCCCCCCEEECc
Q 046398          342 PLPPALGDLSSLTRLDLSRNMLNGSIP----LSLGKISHLEYLDLSNNK---MNGTLSEIH------FVNLTKLTWFSAS  408 (794)
Q Consensus       342 ~~p~~l~~l~~L~~L~Ls~n~l~~~~p----~~l~~l~~L~~L~Ls~N~---l~~~~~~~~------~~~l~~L~~L~ls  408 (794)
                      .++..+..+++|++|+|++|.+++..+    ..+..+++|++|+|++|.   +.+.+|...      +..+++|+.|+++
T Consensus        23 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls  102 (386)
T 2ca6_A           23 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS  102 (386)
T ss_dssp             TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred             HHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECC
Confidence            455667788999999999999986533    447789999999999964   444444321      3566666666666


Q ss_pred             CCcceeEcCCCCcCccccceEecccccCCCCCCcccCCCCCCCEEeccCCCCCCCcchhHHhccccceeccCcccCCC--
Q 046398          409 GNSLILQVNPNWVPPFQLKTLLLMSCHLGPQFPSWLHSQKNLSVLDISNARISDTIPRWFWNSIFQLSGIIPESFKNF--  486 (794)
Q Consensus       409 ~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~l~~~~p~~l~~l--  486 (794)
                      +|.+.....                    ..++..+..+++|++|++++|.+++..+..+           +..+..+  
T Consensus       103 ~n~l~~~~~--------------------~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l-----------~~~l~~l~~  151 (386)
T 2ca6_A          103 DNAFGPTAQ--------------------EPLIDFLSKHTPLEHLYLHNNGLGPQAGAKI-----------ARALQELAV  151 (386)
T ss_dssp             SCCCCTTTH--------------------HHHHHHHHHCTTCCEEECCSSCCHHHHHHHH-----------HHHHHHHHH
T ss_pred             CCcCCHHHH--------------------HHHHHHHHhCCCCCEEECcCCCCCHHHHHHH-----------HHHHHHHhh
Confidence            665432000                    0355667788899999999998875433332           2223333  


Q ss_pred             -------CCCCEEEccCCccc-ccCCh---hhhhcCCCCcEEEcccccccc-----cCCccccCCCCCCEEEccCCcCc-
Q 046398          487 -------SNLEVLNLGDNEFV-GKIPT---WMGEGFTSLLILILRSNKFDG-----FLPIQLCRLTSLQILDVANNSLS-  549 (794)
Q Consensus       487 -------~~L~~L~Ls~n~l~-~~ip~---~~~~~l~~L~~L~L~~n~l~~-----~~p~~~~~l~~L~~L~Ls~N~l~-  549 (794)
                             ++|++|++++|+++ +.+|.   .+ ..+++|+.|++++|+++.     ..|..+..+++|++|+|++|.++ 
T Consensus       152 ~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l-~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~  230 (386)
T 2ca6_A          152 NKKAKNAPPLRSIICGRNRLENGSMKEWAKTF-QSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTH  230 (386)
T ss_dssp             HHHHHTCCCCCEEECCSSCCTGGGHHHHHHHH-HHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHH
T ss_pred             hhhcccCCCCcEEECCCCCCCcHHHHHHHHHH-HhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCc
Confidence                   89999999999997 34442   33 368899999999999873     34447889999999999999986 


Q ss_pred             ---ccCCchhhccccccccccccCCCCcccccccccccccceeeEEEEeccchhhcccccceeEEEcCCCccccc----c
Q 046398          550 ---GTMPGCVNNFSAMATIDSSHQSNAMSYFEVTAYDCEVLEDASIVMKGSMVEYNSILNLVRIIDVSKNNFSGE----I  622 (794)
Q Consensus       550 ---~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~----i  622 (794)
                         +.+|..+..+                                              +.|+.|+|++|++++.    +
T Consensus       231 ~g~~~l~~~l~~~----------------------------------------------~~L~~L~L~~n~i~~~~~~~l  264 (386)
T 2ca6_A          231 LGSSALAIALKSW----------------------------------------------PNLRELGLNDCLLSARGAAAV  264 (386)
T ss_dssp             HHHHHHHHHGGGC----------------------------------------------TTCCEEECTTCCCCHHHHHHH
T ss_pred             HHHHHHHHHHccC----------------------------------------------CCcCEEECCCCCCchhhHHHH
Confidence               4455444443                                              3458999999999876    5


Q ss_pred             Chhhhc--ccCCCEEecccccccc----cCCccc-cccCCCCEEeCCCCcCcccCc
Q 046398          623 PMELTY--LRGLQSLNLSHNIFTG----QIPENI-GNLISIESLDFSTNQLSSKIS  671 (794)
Q Consensus       623 p~~l~~--l~~L~~L~Ls~N~l~~----~ip~~l-~~l~~L~~L~Ls~N~l~~~~p  671 (794)
                      |..+..  +++|+.|+|++|.+++    .+|..+ .++++|+.|++++|++++..|
T Consensus       265 ~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~  320 (386)
T 2ca6_A          265 VDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD  320 (386)
T ss_dssp             HHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred             HHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence            666744  8999999999999997    488888 678999999999999998774

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.84  E-value=3e-20  Score=188.79  Aligned_cols=193  Identities=22%  Similarity=0.314  Sum_probs=161.8

Q ss_pred             CCCcceeeeEecCCCCcEEEEEcCCCCCccccccchhhhhccccccceeecccccCCCCCCEEeCCCCCCCCCCCCcccC
Q 046398           60 GDCCKWAEVVCSNLTGHVLQLSLRNPFRNDLRYATTEYEDYMRSMLSGNVNPSLVDLKHLTHLDLSGNDFQGIRIPKYLG  139 (794)
Q Consensus        60 ~~~c~w~gv~c~~~~~~v~~L~l~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~  139 (794)
                      .+||.|.|.+|..   ..+.+++++.                  .+. .+|..+.  +++++|+|++|.+++. .+..+.
T Consensus         2 ~~Cp~~~gC~C~~---~~~~l~~~~~------------------~l~-~~p~~~~--~~l~~L~L~~n~l~~~-~~~~~~   56 (251)
T 3m19_A            2 KTCETVTGCTCNE---GKKEVDCQGK------------------SLD-SVPSGIP--ADTEKLDLQSTGLATL-SDATFR   56 (251)
T ss_dssp             --CHHHHSSEEEG---GGTEEECTTC------------------CCS-SCCSCCC--TTCCEEECTTSCCCCC-CTTTTT
T ss_pred             ccCCCCCceEcCC---CCeEEecCCC------------------Ccc-ccCCCCC--CCCCEEEccCCCcCcc-CHhHhc
Confidence            3688999999953   2335677763                  333 3555454  5899999999999975 677899


Q ss_pred             CCCCCCEEEcCCCCCCCCCcccccCCccccccccCccccccccccccccccCCCCccCCCCCCCEEECcCCCCCCCCCcc
Q 046398          140 SLKNLRYLNLSGAEFAGIIPHQLGNLSNLRCLDLSWSEYALQVHSFSWLSGQIPNRLGNLTSLRHLDLSANKFNSTTAGW  219 (794)
Q Consensus       140 ~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~~~  219 (794)
                      .+++|++|+|++|.+++..|..+.++++|++|++++|.+.          +..+..+..+++|++|++++|++++..+..
T Consensus        57 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~----------~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~  126 (251)
T 3m19_A           57 GLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLA----------SLPLGVFDHLTQLDKLYLGGNQLKSLPSGV  126 (251)
T ss_dssp             TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCC----------CCCTTTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred             CcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCccc----------ccChhHhcccCCCCEEEcCCCcCCCcChhH
Confidence            9999999999999999888888999999999999988854          344567889999999999999999988888


Q ss_pred             ccCCCCCCeEeeeccCCCCCCCccccCCCCCCcEEEccCCCCCCCCCchhhhccCCCCEEEccCCCCCcc
Q 046398          220 LSKFNHLEFLSLSSNGLQGTISSIGLENLTSIKTIDLSLNFELGGPIPTSFVRLCELTSIDVSDVKLSQD  289 (794)
Q Consensus       220 l~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~  289 (794)
                      +..+++|++|++++|.+++..+ ..+..+++|++|+++ +|.+.+..+..+..+++|+.|++++|.+...
T Consensus       127 ~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~L~-~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  194 (251)
T 3m19_A          127 FDRLTKLKELRLNTNQLQSIPA-GAFDKLTNLQTLSLS-TNQLQSVPHGAFDRLGKLQTITLFGNQFDCS  194 (251)
T ss_dssp             TTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECC-SSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred             hccCCcccEEECcCCcCCccCH-HHcCcCcCCCEEECC-CCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence            9999999999999999985444 378999999999999 7788888788899999999999999999876

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.84  E-value=1.1e-20  Score=198.61  Aligned_cols=233  Identities=17%  Similarity=0.143  Sum_probs=161.9

Q ss_pred             cCCCCEEEccCCCCCcchHHHHHhhhhcCcCCccEEEeecccccccccccc--cCCCCCCEEEccCCcCcCCCC----CC
Q 046398          273 LCELTSIDVSDVKLSQDLSQVLDILSACGASALESLVFSSSQISGHLTSQL--GQFKSLRTLSLDDNCISGPLP----PA  346 (794)
Q Consensus       273 l~~L~~L~l~~~~l~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~~l--~~l~~L~~L~L~~n~l~~~~p----~~  346 (794)
                      ...++.+.+..+.++......+...  ...++|++|++++|.+++..|..+  ..+++|++|++++|.+++..+    ..
T Consensus        63 ~~~l~~l~l~~~~~~~~~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~  140 (310)
T 4glp_A           63 ALRVRRLTVGAAQVPAQLLVGALRV--LAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQ  140 (310)
T ss_dssp             SCCCCEEEECSCCCBHHHHHHHHHH--HHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHH
T ss_pred             hcceeEEEEeCCcCCHHHHHHHHHh--cccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHH
Confidence            3457788888877764332222111  112368888888888888888777  788888888888888886554    23


Q ss_pred             cCCCCCCCEEEccCCcccccCCccccCCCCCCeEeccCcccccc--c-ChhhhcCCCCCCEEECcCCcceeEcCCCCcCc
Q 046398          347 LGDLSSLTRLDLSRNMLNGSIPLSLGKISHLEYLDLSNNKMNGT--L-SEIHFVNLTKLTWFSASGNSLILQVNPNWVPP  423 (794)
Q Consensus       347 l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~--~-~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~  423 (794)
                      +..+++|++|++++|.+++..+..++.+++|++|++++|++.+.  + +...+..+++|+.|++++|.++..        
T Consensus       141 ~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l--------  212 (310)
T 4glp_A          141 QWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETP--------  212 (310)
T ss_dssp             TTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCH--------
T ss_pred             hhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCch--------
Confidence            34678888888888888877777788888888888888887542  1 111234555555555555544210        


Q ss_pred             cccceEecccccCCCCCCc-ccCCCCCCCEEeccCCCCCCCcchhHHhccccceeccCcccCCC---CCCCEEEccCCcc
Q 046398          424 FQLKTLLLMSCHLGPQFPS-WLHSQKNLSVLDISNARISDTIPRWFWNSIFQLSGIIPESFKNF---SNLEVLNLGDNEF  499 (794)
Q Consensus       424 ~~L~~L~L~~n~l~~~~~~-~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~l~~~~p~~l~~l---~~L~~L~Ls~n~l  499 (794)
                                    ...+. .+..+++|++|++++|++++.               .|..+..+   ++|++|++++|++
T Consensus       213 --------------~~~~~~l~~~l~~L~~L~Ls~N~l~~~---------------~p~~~~~~~~~~~L~~L~Ls~N~l  263 (310)
T 4glp_A          213 --------------TGVCAALAAAGVQPHSLDLSHNSLRAT---------------VNPSAPRCMWSSALNSLNLSFAGL  263 (310)
T ss_dssp             --------------HHHHHHHHHHTCCCSSEECTTSCCCCC---------------CCSCCSSCCCCTTCCCEECCSSCC
T ss_pred             --------------HHHHHHHHhcCCCCCEEECCCCCCCcc---------------chhhHHhccCcCcCCEEECCCCCC
Confidence                          01111 245678888999999988764               34445444   6899999999999


Q ss_pred             cccCChhhhhcCCCCcEEEcccccccccCCccccCCCCCCEEEccCCcCcc
Q 046398          500 VGKIPTWMGEGFTSLLILILRSNKFDGFLPIQLCRLTSLQILDVANNSLSG  550 (794)
Q Consensus       500 ~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~  550 (794)
                      + .+|..+.   ++|+.|+|++|++++. |. +..+++|+.|++++|+++.
T Consensus       264 ~-~lp~~~~---~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~~  308 (310)
T 4glp_A          264 E-QVPKGLP---AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFLV  308 (310)
T ss_dssp             C-SCCSCCC---SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTSC
T ss_pred             C-chhhhhc---CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCCC
Confidence            8 7887653   7899999999999864 33 6778999999999998864

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.84  E-value=1e-20  Score=190.81  Aligned_cols=199  Identities=17%  Similarity=0.219  Sum_probs=142.4

Q ss_pred             CCCCEEeccCCCCCCCcchhHHhccccceeccCcccCCCCCCCEEEccCCc-ccccCChhhhhcCCCCcEEEccc-cccc
Q 046398          448 KNLSVLDISNARISDTIPRWFWNSIFQLSGIIPESFKNFSNLEVLNLGDNE-FVGKIPTWMGEGFTSLLILILRS-NKFD  525 (794)
Q Consensus       448 ~~L~~L~Ls~n~l~~~~p~~~~~~~~~l~~~~p~~l~~l~~L~~L~Ls~n~-l~~~ip~~~~~~l~~L~~L~L~~-n~l~  525 (794)
                      +++++|++++|++++               ..+..+.++++|++|++++|+ ++ .++...+..+++|++|++++ |+++
T Consensus        31 ~~l~~L~l~~n~l~~---------------i~~~~~~~l~~L~~L~l~~n~~l~-~i~~~~f~~l~~L~~L~l~~~n~l~   94 (239)
T 2xwt_C           31 PSTQTLKLIETHLRT---------------IPSHAFSNLPNISRIYVSIDVTLQ-QLESHSFYNLSKVTHIEIRNTRNLT   94 (239)
T ss_dssp             TTCCEEEEESCCCSE---------------ECTTTTTTCTTCCEEEEECCSSCC-EECTTTEESCTTCCEEEEEEETTCC
T ss_pred             CcccEEEEeCCcceE---------------ECHHHccCCCCCcEEeCCCCCCcc-eeCHhHcCCCcCCcEEECCCCCCee
Confidence            378888888887765               233467778888888888886 66 56654444688888888887 8888


Q ss_pred             ccCCccccCCCCCCEEEccCCcCcccCCchhhccccccccccccCCCCcccccccccccccceeeEEEEeccchhhcccc
Q 046398          526 GFLPIQLCRLTSLQILDVANNSLSGTMPGCVNNFSAMATIDSSHQSNAMSYFEVTAYDCEVLEDASIVMKGSMVEYNSIL  605 (794)
Q Consensus       526 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l  605 (794)
                      +..+..|..+++|++|++++|++++ +|. +..+++++                                          
T Consensus        95 ~i~~~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~------------------------------------------  130 (239)
T 2xwt_C           95 YIDPDALKELPLLKFLGIFNTGLKM-FPD-LTKVYSTD------------------------------------------  130 (239)
T ss_dssp             EECTTSEECCTTCCEEEEEEECCCS-CCC-CTTCCBCC------------------------------------------
T ss_pred             EcCHHHhCCCCCCCEEeCCCCCCcc-ccc-cccccccc------------------------------------------
Confidence            7767778888888888888888875 554 44444431                                          


Q ss_pred             cceeEEEcCCC-ccccccChhhhcccCCC-EEecccccccccCCccccccCCCCEEeCCCCc-CcccCcccccCC-CCCC
Q 046398          606 NLVRIIDVSKN-NFSGEIPMELTYLRGLQ-SLNLSHNIFTGQIPENIGNLISIESLDFSTNQ-LSSKISQSMSSL-SFLN  681 (794)
Q Consensus       606 ~~L~~LdLs~N-~l~~~ip~~l~~l~~L~-~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~-l~~~~p~~l~~l-~~L~  681 (794)
                       .|+.|++++| ++++..+..+..+++|+ +|++++|+++ .+|......++|+.|++++|+ +++..+..+..+ ++|+
T Consensus       131 -~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~  208 (239)
T 2xwt_C          131 -IFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPS  208 (239)
T ss_dssp             -SEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCS
T ss_pred             -cccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCc
Confidence             1357888888 88766666688888888 8888888888 555544344788888888884 887767778888 8888


Q ss_pred             EEeCcCCcccccCCCCCccCccCcccccC
Q 046398          682 HLNVSNNLLTGKIPSSTQLQSFDASCFVG  710 (794)
Q Consensus       682 ~L~ls~N~l~g~iP~~~~~~~~~~~~~~g  710 (794)
                      .|++++|++++ +|.. .+..+....+.+
T Consensus       209 ~L~l~~N~l~~-l~~~-~~~~L~~L~l~~  235 (239)
T 2xwt_C          209 LLDVSQTSVTA-LPSK-GLEHLKELIARN  235 (239)
T ss_dssp             EEECTTCCCCC-CCCT-TCTTCSEEECTT
T ss_pred             EEECCCCcccc-CChh-HhccCceeeccC
Confidence            88888888874 4443 444444443333

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.84  E-value=1.2e-20  Score=190.28  Aligned_cols=197  Identities=18%  Similarity=0.209  Sum_probs=145.3

Q ss_pred             ccceEecccccCCCCCCcccCCCCCCCEEeccCCC-CCCCcchhHHhccccceeccCcccCCCCCCCEEEccC-Cccccc
Q 046398          425 QLKTLLLMSCHLGPQFPSWLHSQKNLSVLDISNAR-ISDTIPRWFWNSIFQLSGIIPESFKNFSNLEVLNLGD-NEFVGK  502 (794)
Q Consensus       425 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~-l~~~~p~~~~~~~~~l~~~~p~~l~~l~~L~~L~Ls~-n~l~~~  502 (794)
                      ++++|++++|.+++..+..+..+++|++|++++|+ +++               ..+..|.++++|++|++++ |+++ .
T Consensus        32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~---------------i~~~~f~~l~~L~~L~l~~~n~l~-~   95 (239)
T 2xwt_C           32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQ---------------LESHSFYNLSKVTHIEIRNTRNLT-Y   95 (239)
T ss_dssp             TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCE---------------ECTTTEESCTTCCEEEEEEETTCC-E
T ss_pred             cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcce---------------eCHhHcCCCcCCcEEECCCCCCee-E
Confidence            55666666666665556667778888888888886 654               2334677888888888887 8887 5


Q ss_pred             CChhhhhcCCCCcEEEcccccccccCCccccCCCCCC---EEEccCC-cCcccCCchhhccccccccccccCCCCccccc
Q 046398          503 IPTWMGEGFTSLLILILRSNKFDGFLPIQLCRLTSLQ---ILDVANN-SLSGTMPGCVNNFSAMATIDSSHQSNAMSYFE  578 (794)
Q Consensus       503 ip~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~---~L~Ls~N-~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~  578 (794)
                      +|...+..+++|+.|++++|++++ +|. +..+++|+   +|++++| ++++..+..|.++++|                
T Consensus        96 i~~~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L----------------  157 (239)
T 2xwt_C           96 IDPDALKELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNE----------------  157 (239)
T ss_dssp             ECTTSEECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSS----------------
T ss_pred             cCHHHhCCCCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcc----------------
Confidence            554444468888888888888886 555 77888888   8999988 8876666666555544                


Q ss_pred             ccccccccceeeEEEEeccchhhccccccee-EEEcCCCccccccChhhhcccCCCEEeccccc-ccccCCcccccc-CC
Q 046398          579 VTAYDCEVLEDASIVMKGSMVEYNSILNLVR-IIDVSKNNFSGEIPMELTYLRGLQSLNLSHNI-FTGQIPENIGNL-IS  655 (794)
Q Consensus       579 ~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~-~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~-l~~~ip~~l~~l-~~  655 (794)
                                                    + .|++++|+++ .+|......++|+.|+|++|+ +++..+..|..+ ++
T Consensus       158 ------------------------------~~~L~l~~n~l~-~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~  206 (239)
T 2xwt_C          158 ------------------------------TLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSG  206 (239)
T ss_dssp             ------------------------------EEEEECCSCCCC-EECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBC
T ss_pred             ------------------------------eeEEEcCCCCCc-ccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccC
Confidence                                          7 8888888888 555544444789999999995 886666778888 89


Q ss_pred             CCEEeCCCCcCcccCcccccCCCCCCEEeCcCCc
Q 046398          656 IESLDFSTNQLSSKISQSMSSLSFLNHLNVSNNL  689 (794)
Q Consensus       656 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~  689 (794)
                      |+.|++++|++++. |..  .+++|+.|+++++.
T Consensus       207 L~~L~l~~N~l~~l-~~~--~~~~L~~L~l~~~~  237 (239)
T 2xwt_C          207 PSLLDVSQTSVTAL-PSK--GLEHLKELIARNTW  237 (239)
T ss_dssp             CSEEECTTCCCCCC-CCT--TCTTCSEEECTTC-
T ss_pred             CcEEECCCCccccC-Chh--HhccCceeeccCcc
Confidence            99999999999864 433  67788889888763

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.84  E-value=2.8e-20  Score=194.92  Aligned_cols=191  Identities=21%  Similarity=0.338  Sum_probs=147.3

Q ss_pred             ccceEecccccCCCCCCcccCCCCCCCEEeccCCCCCCCcchhHHhccccceeccCcccCCCCCCCEEEccCCcccccCC
Q 046398          425 QLKTLLLMSCHLGPQFPSWLHSQKNLSVLDISNARISDTIPRWFWNSIFQLSGIIPESFKNFSNLEVLNLGDNEFVGKIP  504 (794)
Q Consensus       425 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip  504 (794)
                      +|++|++++|.+.. ++ .+..+++|++|++++|++++                ++. +..+++|++|++++|+++ .++
T Consensus        42 ~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~----------------~~~-~~~l~~L~~L~L~~n~l~-~~~  101 (308)
T 1h6u_A           42 GITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITD----------------LAP-LKNLTKITELELSGNPLK-NVS  101 (308)
T ss_dssp             TCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCC----------------CGG-GTTCCSCCEEECCSCCCS-CCG
T ss_pred             CcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCC----------------Chh-HccCCCCCEEEccCCcCC-Cch
Confidence            44444444444433 23 36678888888998888875                333 778889999999999887 454


Q ss_pred             hhhhhcCCCCcEEEcccccccccCCccccCCCCCCEEEccCCcCcccCCchhhccccccccccccCCCCccccccccccc
Q 046398          505 TWMGEGFTSLLILILRSNKFDGFLPIQLCRLTSLQILDVANNSLSGTMPGCVNNFSAMATIDSSHQSNAMSYFEVTAYDC  584 (794)
Q Consensus       505 ~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~  584 (794)
                       .+. .+++|+.|++++|++++. + .+..+++|++|++++|++++..+  +..                          
T Consensus       102 -~~~-~l~~L~~L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~--l~~--------------------------  149 (308)
T 1h6u_A          102 -AIA-GLQSIKTLDLTSTQITDV-T-PLAGLSNLQVLYLDLNQITNISP--LAG--------------------------  149 (308)
T ss_dssp             -GGT-TCTTCCEEECTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG--GGG--------------------------
T ss_pred             -hhc-CCCCCCEEECCCCCCCCc-h-hhcCCCCCCEEECCCCccCcCcc--ccC--------------------------
Confidence             343 688999999999998864 3 38889999999999998875433  333                          


Q ss_pred             ccceeeEEEEeccchhhcccccceeEEEcCCCccccccChhhhcccCCCEEecccccccccCCccccccCCCCEEeCCCC
Q 046398          585 EVLEDASIVMKGSMVEYNSILNLVRIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQIPENIGNLISIESLDFSTN  664 (794)
Q Consensus       585 ~~l~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N  664 (794)
                                          ++.|+.|++++|++++..+  +..+++|+.|++++|++++. +. +..+++|+.|+|++|
T Consensus       150 --------------------l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~L~~N  205 (308)
T 1h6u_A          150 --------------------LTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDI-SP-LASLPNLIEVHLKNN  205 (308)
T ss_dssp             --------------------CTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC-GG-GGGCTTCCEEECTTS
T ss_pred             --------------------CCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccCcC-hh-hcCCCCCCEEEccCC
Confidence                                3345889999999986433  88999999999999999854 33 899999999999999


Q ss_pred             cCcccCcccccCCCCCCEEeCcCCccccc
Q 046398          665 QLSSKISQSMSSLSFLNHLNVSNNLLTGK  693 (794)
Q Consensus       665 ~l~~~~p~~l~~l~~L~~L~ls~N~l~g~  693 (794)
                      ++++..|  +..+++|+.|++++|++++.
T Consensus       206 ~l~~~~~--l~~l~~L~~L~l~~N~i~~~  232 (308)
T 1h6u_A          206 QISDVSP--LANTSNLFIVTLTNQTITNQ  232 (308)
T ss_dssp             CCCBCGG--GTTCTTCCEEEEEEEEEECC
T ss_pred             ccCcccc--ccCCCCCCEEEccCCeeecC
Confidence            9997654  88999999999999999863

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.83  E-value=1.3e-21  Score=210.40  Aligned_cols=256  Identities=18%  Similarity=0.219  Sum_probs=117.3

Q ss_pred             EeCCCCCCCCCCCCcccCCCCCCCEEEcCCCCCCCCCc----ccccCCc-cccccccCccccccccccccccccCCCCcc
Q 046398          122 LDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIP----HQLGNLS-NLRCLDLSWSEYALQVHSFSWLSGQIPNRL  196 (794)
Q Consensus       122 L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p----~~l~~l~-~L~~L~Ls~~~~~~~~~~~~~~~~~lp~~l  196 (794)
                      ++++.|.+++. +|..+...++|++|+|++|.+++..+    +.+.+++ +|++|++++|.+.          +..+..+
T Consensus         3 ~~ls~n~~~~~-~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~----------~~~~~~l   71 (362)
T 3goz_A            3 YKLTLHPGSNP-VEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLG----------FKNSDEL   71 (362)
T ss_dssp             EECCCCTTCCH-HHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGG----------GSCHHHH
T ss_pred             cccccccchHH-HHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCC----------HHHHHHH
Confidence            34455555542 44444444445555555555544333    3444444 4555555444422          1122222


Q ss_pred             CCC-----CCCCEEECcCCCCCCCCCcccc----CC-CCCCeEeeeccCCCCCCCcc---ccCC-CCCCcEEEccCCCCC
Q 046398          197 GNL-----TSLRHLDLSANKFNSTTAGWLS----KF-NHLEFLSLSSNGLQGTISSI---GLEN-LTSIKTIDLSLNFEL  262 (794)
Q Consensus       197 ~~l-----~~L~~L~Ls~n~l~~~~~~~l~----~l-~~L~~L~L~~n~l~~~i~~~---~l~~-l~~L~~L~L~~~~~~  262 (794)
                      ..+     ++|++|++++|.+++..+..+.    .+ ++|++|++++|.+++..+..   .+.. .++|++|+++ +|.+
T Consensus        72 ~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls-~N~l  150 (362)
T 3goz_A           72 VQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLR-GNDL  150 (362)
T ss_dssp             HHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECT-TSCG
T ss_pred             HHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEcc-CCcC
Confidence            222     5555555555555554444322    22 45555555555554222110   1222 1345555555 3333


Q ss_pred             CCCCc----hhhhccC-CCCEEEccCCCCCcchHHHHHhhhhcCcCCccEEEeeccccccc----ccccccC-CCCCCEE
Q 046398          263 GGPIP----TSFVRLC-ELTSIDVSDVKLSQDLSQVLDILSACGASALESLVFSSSQISGH----LTSQLGQ-FKSLRTL  332 (794)
Q Consensus       263 ~~~~~----~~l~~l~-~L~~L~l~~~~l~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~----~~~~l~~-l~~L~~L  332 (794)
                      ++..+    ..+...+ +|+.|++++|.+++..+..+...-....++|++|++++|.+++.    ++..+.. .++|++|
T Consensus       151 ~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L  230 (362)
T 3goz_A          151 GIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSL  230 (362)
T ss_dssp             GGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEE
T ss_pred             CHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEE
Confidence            33222    2233333 66666666666665555444432111112566666666665542    2223333 3466666


Q ss_pred             EccCCcCcCCCC----CCcCCCCCCCEEEccCCccccc-------CCccccCCCCCCeEeccCccccc
Q 046398          333 SLDDNCISGPLP----PALGDLSSLTRLDLSRNMLNGS-------IPLSLGKISHLEYLDLSNNKMNG  389 (794)
Q Consensus       333 ~L~~n~l~~~~p----~~l~~l~~L~~L~Ls~n~l~~~-------~p~~l~~l~~L~~L~Ls~N~l~~  389 (794)
                      ++++|.+++..+    ..+..+++|++|++++|.+.+.       ++..+..+++|++|++++|++.+
T Consensus       231 ~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~  298 (362)
T 3goz_A          231 NLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHP  298 (362)
T ss_dssp             ECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCG
T ss_pred             ECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCC
Confidence            666666654332    2234455566666666653321       22234445555555565555543

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.82  E-value=1.1e-19  Score=190.41  Aligned_cols=195  Identities=25%  Similarity=0.370  Sum_probs=136.9

Q ss_pred             ccCCCCCCEEeCCCCCCCCCCCCcccCCCCCCCEEEcCCCCCCCCCcccccCCccccccccCccccccccccccccccCC
Q 046398          113 LVDLKHLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRCLDLSWSEYALQVHSFSWLSGQI  192 (794)
Q Consensus       113 l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~~~~l  192 (794)
                      ..++++|++|++++|.++.  +| .+..+++|++|++++|.+++..+  +..+++|++|++++|.+.           .+
T Consensus        37 ~~~l~~L~~L~l~~~~i~~--l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~-----------~~  100 (308)
T 1h6u_A           37 QADLDGITTLSAFGTGVTT--IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLK-----------NV  100 (308)
T ss_dssp             HHHHHTCCEEECTTSCCCC--CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCS-----------CC
T ss_pred             HHHcCCcCEEEeeCCCccC--ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCC-----------Cc
Confidence            4578899999999998884  45 57889999999999999885443  888888999999888754           23


Q ss_pred             CCccCCCCCCCEEECcCCCCCCCCCccccCCCCCCeEeeeccCCCCCCCccccCCCCCCcEEEccCCCCCCCCCchhhhc
Q 046398          193 PNRLGNLTSLRHLDLSANKFNSTTAGWLSKFNHLEFLSLSSNGLQGTISSIGLENLTSIKTIDLSLNFELGGPIPTSFVR  272 (794)
Q Consensus       193 p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~~~~~~~~~~~~l~~  272 (794)
                      + .+.++++|++|++++|.+++..+  +..+++|++|++++|.+++..   .+..+++|++|+++ ++.+.+. +. +..
T Consensus       101 ~-~~~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~---~l~~l~~L~~L~l~-~n~l~~~-~~-l~~  171 (308)
T 1h6u_A          101 S-AIAGLQSIKTLDLTSTQITDVTP--LAGLSNLQVLYLDLNQITNIS---PLAGLTNLQYLSIG-NAQVSDL-TP-LAN  171 (308)
T ss_dssp             G-GGTTCTTCCEEECTTSCCCCCGG--GTTCTTCCEEECCSSCCCCCG---GGGGCTTCCEEECC-SSCCCCC-GG-GTT
T ss_pred             h-hhcCCCCCCEEECCCCCCCCchh--hcCCCCCCEEECCCCccCcCc---cccCCCCccEEEcc-CCcCCCC-hh-hcC
Confidence            3 57788888888888888877533  777888888888888776432   14555555555555 3333332 11 333


Q ss_pred             cCCCCEEEccCCCCCcchHHHHHhhhhcCcCCccEEEeecccccccccccccCCCCCCEEEccCCcCcCCCCCCcCCCCC
Q 046398          273 LCELTSIDVSDVKLSQDLSQVLDILSACGASALESLVFSSSQISGHLTSQLGQFKSLRTLSLDDNCISGPLPPALGDLSS  352 (794)
Q Consensus       273 l~~L~~L~l~~~~l~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~  352 (794)
                      ++                             +|++|++++|.+++..+  +..+++|++|++++|.+++..+  +..+++
T Consensus       172 l~-----------------------------~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~  218 (308)
T 1h6u_A          172 LS-----------------------------KLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSN  218 (308)
T ss_dssp             CT-----------------------------TCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTT
T ss_pred             CC-----------------------------CCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCcccc--ccCCCC
Confidence            43                             55566666666654433  6677788888888888875542  677888


Q ss_pred             CCEEEccCCcccc
Q 046398          353 LTRLDLSRNMLNG  365 (794)
Q Consensus       353 L~~L~Ls~n~l~~  365 (794)
                      |++|++++|.+++
T Consensus       219 L~~L~l~~N~i~~  231 (308)
T 1h6u_A          219 LFIVTLTNQTITN  231 (308)
T ss_dssp             CCEEEEEEEEEEC
T ss_pred             CCEEEccCCeeec
Confidence            8888888888763

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.81  E-value=6.5e-20  Score=181.86  Aligned_cols=157  Identities=20%  Similarity=0.221  Sum_probs=132.7

Q ss_pred             CEEEccCCcccccCChhhhhcCCCCcEEEcccccccccCC-ccccCCCCCCEEEccCCcCcccCCchhhccccccccccc
Q 046398          490 EVLNLGDNEFVGKIPTWMGEGFTSLLILILRSNKFDGFLP-IQLCRLTSLQILDVANNSLSGTMPGCVNNFSAMATIDSS  568 (794)
Q Consensus       490 ~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~  568 (794)
                      +.+++++|.++ .+|..+.   +.++.|+|++|++++..+ ..|..+++|++|++++|++++..+..|.++++|      
T Consensus        14 ~~l~~s~n~l~-~iP~~~~---~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L------   83 (220)
T 2v70_A           14 TTVDCSNQKLN-KIPEHIP---QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGV------   83 (220)
T ss_dssp             TEEECCSSCCS-SCCSCCC---TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTC------
T ss_pred             CEeEeCCCCcc-cCccCCC---CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCC------
Confidence            57888888887 6776543   456788888888887654 457888899999999998887777666665554      


Q ss_pred             cCCCCcccccccccccccceeeEEEEeccchhhcccccceeEEEcCCCccccccChhhhcccCCCEEecccccccccCCc
Q 046398          569 HQSNAMSYFEVTAYDCEVLEDASIVMKGSMVEYNSILNLVRIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQIPE  648 (794)
Q Consensus       569 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~  648 (794)
                                                              ++|+|++|++++..+..+..+++|++|+|++|++++..|.
T Consensus        84 ----------------------------------------~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~  123 (220)
T 2v70_A           84 ----------------------------------------NEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGND  123 (220)
T ss_dssp             ----------------------------------------CEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTT
T ss_pred             ----------------------------------------CEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHh
Confidence                                                    7889999999888888899999999999999999988899


Q ss_pred             cccccCCCCEEeCCCCcCcccCcccccCCCCCCEEeCcCCcccccCCC
Q 046398          649 NIGNLISIESLDFSTNQLSSKISQSMSSLSFLNHLNVSNNLLTGKIPS  696 (794)
Q Consensus       649 ~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~  696 (794)
                      .|..+++|+.|+|++|++++..|..+..+++|++|++++|++++..+-
T Consensus       124 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l  171 (220)
T 2v70_A          124 SFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCYL  171 (220)
T ss_dssp             SSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGGG
T ss_pred             HcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCch
Confidence            999999999999999999999899999999999999999999987664

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.81  E-value=2.4e-19  Score=201.39  Aligned_cols=78  Identities=21%  Similarity=0.376  Sum_probs=40.4

Q ss_pred             eEEEcCCCccccccChhhhcccCCCEEecccccccccCCccccccCCC-------CEEeCCCCcCcccCcccccCCCCCC
Q 046398          609 RIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQIPENIGNLISI-------ESLDFSTNQLSSKISQSMSSLSFLN  681 (794)
Q Consensus       609 ~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L-------~~L~Ls~N~l~~~~p~~l~~l~~L~  681 (794)
                      +.|++++|++++ +|. +.  ++|+.|+|++|+|+ .+|. +..  +|       +.|+|++|+|+. +|..+..+++|+
T Consensus       163 ~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~~-lp~~l~~l~~L~  233 (571)
T 3cvr_A          163 EVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRITH-IPENILSLDPTC  233 (571)
T ss_dssp             CEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCCC-CCGGGGGSCTTE
T ss_pred             CEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCccee-cCHHHhcCCCCC
Confidence            555555555553 444 33  55555555555555 4444 333  44       555555555552 455555555555


Q ss_pred             EEeCcCCcccccCC
Q 046398          682 HLNVSNNLLTGKIP  695 (794)
Q Consensus       682 ~L~ls~N~l~g~iP  695 (794)
                      .|++++|+++|.+|
T Consensus       234 ~L~L~~N~l~~~~p  247 (571)
T 3cvr_A          234 TIILEDNPLSSRIR  247 (571)
T ss_dssp             EEECCSSSCCHHHH
T ss_pred             EEEeeCCcCCCcCH
Confidence            55555555555554

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.80  E-value=3e-19  Score=175.82  Aligned_cols=175  Identities=19%  Similarity=0.230  Sum_probs=138.4

Q ss_pred             CEEeccCCCCCCCcchhHHhccccceeccCcccCCCCCCCEEEccCCcccccCChhhhhcCCCCcEEEcccccccccCCc
Q 046398          451 SVLDISNARISDTIPRWFWNSIFQLSGIIPESFKNFSNLEVLNLGDNEFVGKIPTWMGEGFTSLLILILRSNKFDGFLPI  530 (794)
Q Consensus       451 ~~L~Ls~n~l~~~~p~~~~~~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~  530 (794)
                      +.++.+++.++.                +|..+  .++|++|++++|+++ .++...+..+++|++|++++|++++..+.
T Consensus        10 ~~v~c~~~~l~~----------------~p~~~--~~~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~   70 (208)
T 2o6s_A           10 TTVECYSQGRTS----------------VPTGI--PAQTTYLDLETNSLK-SLPNGVFDELTSLTQLYLGGNKLQSLPNG   70 (208)
T ss_dssp             TEEECCSSCCSS----------------CCSCC--CTTCSEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCTT
T ss_pred             CEEEecCCCccC----------------CCCCC--CCCCcEEEcCCCccC-cCChhhhcccccCcEEECCCCccCccChh
Confidence            466677776664                34333  357889999999888 55555444788999999999998877667


Q ss_pred             cccCCCCCCEEEccCCcCcccCCchhhccccccccccccCCCCcccccccccccccceeeEEEEeccchhhcccccceeE
Q 046398          531 QLCRLTSLQILDVANNSLSGTMPGCVNNFSAMATIDSSHQSNAMSYFEVTAYDCEVLEDASIVMKGSMVEYNSILNLVRI  610 (794)
Q Consensus       531 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~  610 (794)
                      .|..+++|++|++++|++++..+..+.++++|                                              +.
T Consensus        71 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L----------------------------------------------~~  104 (208)
T 2o6s_A           71 VFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQL----------------------------------------------KE  104 (208)
T ss_dssp             TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC----------------------------------------------CE
T ss_pred             hcCCCCCcCEEECCCCcCCccCHhHhcCccCC----------------------------------------------CE
Confidence            78889999999999999886655555554444                                              88


Q ss_pred             EEcCCCccccccChhhhcccCCCEEecccccccccCCccccccCCCCEEeCCCCcCcccCcccccCCCCCCEEeCcCCcc
Q 046398          611 IDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQIPENIGNLISIESLDFSTNQLSSKISQSMSSLSFLNHLNVSNNLL  690 (794)
Q Consensus       611 LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l  690 (794)
                      |++++|++++..+..+..+++|++|+|++|++++..+..+..+++|+.|++++|.+.+.       ++.|++|+++.|++
T Consensus       105 L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~L~~~~n~~  177 (208)
T 2o6s_A          105 LALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKH  177 (208)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCC-------TTTTHHHHHHHHHC
T ss_pred             EEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeecC-------CCCHHHHHHHHHhC
Confidence            89999999877777788899999999999999976666788999999999999988754       45789999999999


Q ss_pred             cccCCCC
Q 046398          691 TGKIPSS  697 (794)
Q Consensus       691 ~g~iP~~  697 (794)
                      +|.+|..
T Consensus       178 ~g~ip~~  184 (208)
T 2o6s_A          178 SGVVRNS  184 (208)
T ss_dssp             TTTBBCT
T ss_pred             Cceeecc
Confidence            9999963

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.79  E-value=6.8e-19  Score=197.76  Aligned_cols=188  Identities=28%  Similarity=0.384  Sum_probs=110.4

Q ss_pred             CCCeEeccCcccccccChhhhcCCCCCCEEECcCCcceeEcCCCCcCccccceEecccccCCCCCCcccCCCCCCCEEec
Q 046398          376 HLEYLDLSNNKMNGTLSEIHFVNLTKLTWFSASGNSLILQVNPNWVPPFQLKTLLLMSCHLGPQFPSWLHSQKNLSVLDI  455 (794)
Q Consensus       376 ~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L  455 (794)
                      +++.|++++|.+++ +|...   .++|+.|++++|.++                         .+|   ..+++|+.|++
T Consensus        60 ~L~~L~Ls~n~L~~-lp~~l---~~~L~~L~Ls~N~l~-------------------------~ip---~~l~~L~~L~L  107 (571)
T 3cvr_A           60 QFSELQLNRLNLSS-LPDNL---PPQITVLEITQNALI-------------------------SLP---ELPASLEYLDA  107 (571)
T ss_dssp             TCSEEECCSSCCSC-CCSCC---CTTCSEEECCSSCCS-------------------------CCC---CCCTTCCEEEC
T ss_pred             CccEEEeCCCCCCc-cCHhH---cCCCCEEECcCCCCc-------------------------ccc---cccCCCCEEEc
Confidence            66677777776664 44311   245555555555544                         233   23456666666


Q ss_pred             cCCCCCCCcchhHHhccccceeccCcccCCCCCCCEEEccCCcccccCChhhhhcCCCCcEEEcccccccccCCccccCC
Q 046398          456 SNARISDTIPRWFWNSIFQLSGIIPESFKNFSNLEVLNLGDNEFVGKIPTWMGEGFTSLLILILRSNKFDGFLPIQLCRL  535 (794)
Q Consensus       456 s~n~l~~~~p~~~~~~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l  535 (794)
                      ++|++++                +|. +..  +|++|++++|++++ +|.    .+++|+.|+|++|++++ +|.   .+
T Consensus       108 s~N~l~~----------------ip~-l~~--~L~~L~Ls~N~l~~-lp~----~l~~L~~L~Ls~N~l~~-lp~---~l  159 (571)
T 3cvr_A          108 CDNRLST----------------LPE-LPA--SLKHLDVDNNQLTM-LPE----LPALLEYINADNNQLTM-LPE---LP  159 (571)
T ss_dssp             CSSCCSC----------------CCC-CCT--TCCEEECCSSCCSC-CCC----CCTTCCEEECCSSCCSC-CCC---CC
T ss_pred             cCCCCCC----------------cch-hhc--CCCEEECCCCcCCC-CCC----cCccccEEeCCCCccCc-CCC---cC
Confidence            6666554                333 322  66666666666663 554    35666666666666664 343   45


Q ss_pred             CCCCEEEccCCcCcccCCchhhccccccccccccCCCCcccccccccccccceeeEEEEeccchhhcccccceeEEEcCC
Q 046398          536 TSLQILDVANNSLSGTMPGCVNNFSAMATIDSSHQSNAMSYFEVTAYDCEVLEDASIVMKGSMVEYNSILNLVRIIDVSK  615 (794)
Q Consensus       536 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~LdLs~  615 (794)
                      ++|++|++++|++++ +|. +.  +                                              +|+.|+|++
T Consensus       160 ~~L~~L~Ls~N~L~~-lp~-l~--~----------------------------------------------~L~~L~Ls~  189 (571)
T 3cvr_A          160 TSLEVLSVRNNQLTF-LPE-LP--E----------------------------------------------SLEALDVST  189 (571)
T ss_dssp             TTCCEEECCSSCCSC-CCC-CC--T----------------------------------------------TCCEEECCS
T ss_pred             CCcCEEECCCCCCCC-cch-hh--C----------------------------------------------CCCEEECcC
Confidence            666666666666664 443 21  1                                              236666666


Q ss_pred             CccccccChhhhcccCC-------CEEecccccccccCCccccccCCCCEEeCCCCcCcccCcccccCCC
Q 046398          616 NNFSGEIPMELTYLRGL-------QSLNLSHNIFTGQIPENIGNLISIESLDFSTNQLSSKISQSMSSLS  678 (794)
Q Consensus       616 N~l~~~ip~~l~~l~~L-------~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~  678 (794)
                      |+|+ .+|. +..  +|       +.|+|++|+|+ .+|..+..+++|+.|+|++|++++.+|..+..++
T Consensus       190 N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~  254 (571)
T 3cvr_A          190 NLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQT  254 (571)
T ss_dssp             SCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHH
T ss_pred             CCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhh
Confidence            6666 5555 443  55       77777777777 5777777777777777777777777777666543

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.79  E-value=1.3e-18  Score=185.95  Aligned_cols=190  Identities=19%  Similarity=0.129  Sum_probs=96.8

Q ss_pred             CCCEEEccCCcccccCCccccCCCCCCeEeccCcccccccChhhhcCCCCCCE-EECcCCcceeEcCCCCcCccccceEe
Q 046398          352 SLTRLDLSRNMLNGSIPLSLGKISHLEYLDLSNNKMNGTLSEIHFVNLTKLTW-FSASGNSLILQVNPNWVPPFQLKTLL  430 (794)
Q Consensus       352 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~-L~ls~n~l~~~~~~~~~~~~~L~~L~  430 (794)
                      ++++|+|++|+|+...+.+|.++++|++|+|++|++.+.++...|.+++++.. +.+..|++....+..+..+++|++|+
T Consensus        31 ~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~  110 (350)
T 4ay9_X           31 NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLL  110 (350)
T ss_dssp             TCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEE
T ss_pred             CCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhcccccccc
Confidence            34444444444442222334444444444444444443444434444444332 22333444444344444444444445


Q ss_pred             cccccCCCCCCcccCCCCCCCEEeccCC-CCCCCcchhHHhccccceeccCcccCCC-CCCCEEEccCCcccccCChhhh
Q 046398          431 LMSCHLGPQFPSWLHSQKNLSVLDISNA-RISDTIPRWFWNSIFQLSGIIPESFKNF-SNLEVLNLGDNEFVGKIPTWMG  508 (794)
Q Consensus       431 L~~n~l~~~~~~~l~~l~~L~~L~Ls~n-~l~~~~p~~~~~~~~~l~~~~p~~l~~l-~~L~~L~Ls~n~l~~~ip~~~~  508 (794)
                      +++|.+....+..+....++..+++.++ ++..               ..+..|..+ ..++.|++++|+++ .+|...+
T Consensus       111 l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~---------------l~~~~f~~~~~~l~~L~L~~N~i~-~i~~~~f  174 (350)
T 4ay9_X          111 ISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHT---------------IERNSFVGLSFESVILWLNKNGIQ-EIHNSAF  174 (350)
T ss_dssp             EEEECCSSCCCCTTCCBSSCEEEEEESCTTCCE---------------ECTTSSTTSBSSCEEEECCSSCCC-EECTTSS
T ss_pred             ccccccccCCchhhcccchhhhhhhcccccccc---------------ccccchhhcchhhhhhcccccccc-CCChhhc
Confidence            5555444444444444555666666543 3332               122234443 35677777777776 5666665


Q ss_pred             hcCCCCcEEEccc-ccccccCCccccCCCCCCEEEccCCcCcccCCchhhc
Q 046398          509 EGFTSLLILILRS-NKFDGFLPIQLCRLTSLQILDVANNSLSGTMPGCVNN  558 (794)
Q Consensus       509 ~~l~~L~~L~L~~-n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~  558 (794)
                       ...+|+.|++++ |.++...+..|..+++|++||+++|+++...+..+.+
T Consensus       175 -~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~~~  224 (350)
T 4ay9_X          175 -NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLEN  224 (350)
T ss_dssp             -TTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSCTT
T ss_pred             -cccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhhcc
Confidence             356777777764 4454433446677777778888777777443333333

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.79  E-value=7.5e-19  Score=187.78  Aligned_cols=242  Identities=18%  Similarity=0.171  Sum_probs=151.3

Q ss_pred             CEEeCCCCCCCCCCCCcccCCCCCCCEEEcCCCCCCCCCcccccCCccccccccCccccccccccccccccCCC-CccCC
Q 046398          120 THLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRCLDLSWSEYALQVHSFSWLSGQIP-NRLGN  198 (794)
Q Consensus       120 ~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~~~~lp-~~l~~  198 (794)
                      ++++.++++++  ++|..+  .+++++|+|++|+|+...+..|.++++|++|+|++|.+.          +.+| ..|.+
T Consensus        12 ~~v~C~~~~Lt--~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~----------~~i~~~~f~~   77 (350)
T 4ay9_X           12 RVFLCQESKVT--EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVL----------EVIEADVFSN   77 (350)
T ss_dssp             TEEEEESTTCC--SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTC----------CEECTTSBCS
T ss_pred             CEEEecCCCCC--ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCC----------CccChhHhhc
Confidence            56788888888  578766  368899999999998655567889999999999888742          3344 45778


Q ss_pred             CCCCCE-EECcCCCCCCCCCccccCCCCCCeEeeeccCCCCCCCccccCCCCCCcEEEccCCCCCCCCCchhhhccCCCC
Q 046398          199 LTSLRH-LDLSANKFNSTTAGWLSKFNHLEFLSLSSNGLQGTISSIGLENLTSIKTIDLSLNFELGGPIPTSFVRLCELT  277 (794)
Q Consensus       199 l~~L~~-L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~  277 (794)
                      ++++++ +.+++|+++...+..|..+++|++|++++|.++. ++...+....++..+++..++.+....+..+..+..  
T Consensus        78 L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~-~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~--  154 (350)
T 4ay9_X           78 LPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKH-LPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSF--  154 (350)
T ss_dssp             CTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSS-CCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBS--
T ss_pred             chhhhhhhcccCCcccccCchhhhhcccccccccccccccc-CCchhhcccchhhhhhhccccccccccccchhhcch--
Confidence            888775 5667789999888889999999999999999884 443356666677778876444444333333333321  


Q ss_pred             EEEccCCCCCcchHHHHHhhhhcCcCCccEEEeecccccccccccccCCCCCCEEEccC-CcCcCCCCCCcCCCCCCCEE
Q 046398          278 SIDVSDVKLSQDLSQVLDILSACGASALESLVFSSSQISGHLTSQLGQFKSLRTLSLDD-NCISGPLPPALGDLSSLTRL  356 (794)
Q Consensus       278 ~L~l~~~~l~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~-n~l~~~~p~~l~~l~~L~~L  356 (794)
                                                .++.|++++|+++...+..+ ..++|+++++.+ |.++...+..|.++++|++|
T Consensus       155 --------------------------~l~~L~L~~N~i~~i~~~~f-~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~L  207 (350)
T 4ay9_X          155 --------------------------ESVILWLNKNGIQEIHNSAF-NGTQLDELNLSDNNNLEELPNDVFHGASGPVIL  207 (350)
T ss_dssp             --------------------------SCEEEECCSSCCCEECTTSS-TTEEEEEEECTTCTTCCCCCTTTTTTEECCSEE
T ss_pred             --------------------------hhhhhccccccccCCChhhc-cccchhHHhhccCCcccCCCHHHhccCcccchh
Confidence                                      34455555555554333322 334566666653 44443333445666666666


Q ss_pred             EccCCcccccCCccccCCCCCCeEeccCcccccccChhhhcCCCCCCEEECcCC
Q 046398          357 DLSRNMLNGSIPLSLGKISHLEYLDLSNNKMNGTLSEIHFVNLTKLTWFSASGN  410 (794)
Q Consensus       357 ~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~ls~n  410 (794)
                      ++++|+++. +|..  .+.+|+.|.+.++.--..+|  .+.++++|+.+++.++
T Consensus       208 dLs~N~l~~-lp~~--~~~~L~~L~~l~~~~l~~lP--~l~~l~~L~~l~l~~~  256 (350)
T 4ay9_X          208 DISRTRIHS-LPSY--GLENLKKLRARSTYNLKKLP--TLEKLVALMEASLTYP  256 (350)
T ss_dssp             ECTTSCCCC-CCSS--SCTTCCEEECTTCTTCCCCC--CTTTCCSCCEEECSCH
T ss_pred             hcCCCCcCc-cChh--hhccchHhhhccCCCcCcCC--CchhCcChhhCcCCCC
Confidence            666666653 3321  23344444444333223444  2555666666666543

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.78  E-value=1.3e-18  Score=172.41  Aligned_cols=155  Identities=17%  Similarity=0.229  Sum_probs=130.3

Q ss_pred             CEEEccCCcccccCChhhhhcCCCCcEEEcccccccccCCccccCCCCCCEEEccCCcCcccCCchhhcccccccccccc
Q 046398          490 EVLNLGDNEFVGKIPTWMGEGFTSLLILILRSNKFDGFLPIQLCRLTSLQILDVANNSLSGTMPGCVNNFSAMATIDSSH  569 (794)
Q Consensus       490 ~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~  569 (794)
                      +.++++++.++ .+|..+.   ++++.|++++|++++..+..|..+++|++|+|++|++++..|..|.++++|       
T Consensus        14 ~~v~c~~~~l~-~iP~~l~---~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L-------   82 (220)
T 2v9t_B           14 NIVDCRGKGLT-EIPTNLP---ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSL-------   82 (220)
T ss_dssp             TEEECTTSCCS-SCCSSCC---TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSC-------
T ss_pred             CEEEcCCCCcC-cCCCccC---cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCC-------
Confidence            56788888887 6776543   678888888888887777788888899999999999888777777665555       


Q ss_pred             CCCCcccccccccccccceeeEEEEeccchhhcccccceeEEEcCCCccccccChhhhcccCCCEEecccccccccCCcc
Q 046398          570 QSNAMSYFEVTAYDCEVLEDASIVMKGSMVEYNSILNLVRIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQIPEN  649 (794)
Q Consensus       570 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~  649 (794)
                                                             ++|+|++|++++..+..+..+++|++|+|++|++++..|..
T Consensus        83 ---------------------------------------~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~  123 (220)
T 2v9t_B           83 ---------------------------------------NSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDA  123 (220)
T ss_dssp             ---------------------------------------CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred             ---------------------------------------CEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHH
Confidence                                                   78889999998655556788999999999999999888889


Q ss_pred             ccccCCCCEEeCCCCcCcccCcccccCCCCCCEEeCcCCcccccC
Q 046398          650 IGNLISIESLDFSTNQLSSKISQSMSSLSFLNHLNVSNNLLTGKI  694 (794)
Q Consensus       650 l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~i  694 (794)
                      |..+++|+.|+|++|++++..+..+..+++|++|++++|++.+..
T Consensus       124 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c  168 (220)
T 2v9t_B          124 FQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDC  168 (220)
T ss_dssp             TTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECSG
T ss_pred             cCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCCC
Confidence            999999999999999999988888999999999999999997643

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.77  E-value=2.3e-18  Score=171.96  Aligned_cols=157  Identities=21%  Similarity=0.268  Sum_probs=136.2

Q ss_pred             CCEEEccCCcccccCChhhhhcCCCCcEEEcccccccccCCccccCCCCCCEEEccCCcCcccCCchhhccccccccccc
Q 046398          489 LEVLNLGDNEFVGKIPTWMGEGFTSLLILILRSNKFDGFLPIQLCRLTSLQILDVANNSLSGTMPGCVNNFSAMATIDSS  568 (794)
Q Consensus       489 L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~  568 (794)
                      .+.++.++++++ .+|..+   .++|+.|+|++|++++..|..|..+++|++|+|++|+++...+..|..+++|      
T Consensus        21 ~~~v~c~~~~l~-~ip~~~---~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L------   90 (229)
T 3e6j_A           21 GTTVDCRSKRHA-SVPAGI---PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQL------   90 (229)
T ss_dssp             TTEEECTTSCCS-SCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC------
T ss_pred             CCEeEccCCCcC-ccCCCC---CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCc------
Confidence            567888888887 788754   3789999999999998888889999999999999999976555555554444      


Q ss_pred             cCCCCcccccccccccccceeeEEEEeccchhhcccccceeEEEcCCCccccccChhhhcccCCCEEecccccccccCCc
Q 046398          569 HQSNAMSYFEVTAYDCEVLEDASIVMKGSMVEYNSILNLVRIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQIPE  648 (794)
Q Consensus       569 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~  648 (794)
                                                              +.|+|++|++++..+..+..+++|++|+|++|+++ .+|.
T Consensus        91 ----------------------------------------~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~  129 (229)
T 3e6j_A           91 ----------------------------------------TVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPR  129 (229)
T ss_dssp             ----------------------------------------CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCT
T ss_pred             ----------------------------------------CEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCc
Confidence                                                    88999999999777777899999999999999999 8899


Q ss_pred             cccccCCCCEEeCCCCcCcccCcccccCCCCCCEEeCcCCcccccCCC
Q 046398          649 NIGNLISIESLDFSTNQLSSKISQSMSSLSFLNHLNVSNNLLTGKIPS  696 (794)
Q Consensus       649 ~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~  696 (794)
                      .+..+++|+.|+|++|++++..+..+..+++|+.|++++|++.+..+.
T Consensus       130 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~  177 (229)
T 3e6j_A          130 GIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECRD  177 (229)
T ss_dssp             TGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBGG
T ss_pred             ccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcch
Confidence            999999999999999999988888899999999999999999988763

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.77  E-value=3.5e-18  Score=169.38  Aligned_cols=157  Identities=18%  Similarity=0.214  Sum_probs=135.7

Q ss_pred             CEEeccCCCCCCCcchhHHhccccceeccCcccCCCCCCCEEEccCCcccccCChhhhhcCCCCcEEEcccccccccCCc
Q 046398          451 SVLDISNARISDTIPRWFWNSIFQLSGIIPESFKNFSNLEVLNLGDNEFVGKIPTWMGEGFTSLLILILRSNKFDGFLPI  530 (794)
Q Consensus       451 ~~L~Ls~n~l~~~~p~~~~~~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~  530 (794)
                      +.+++++|.++.                +|..+.  +.+++|++++|++++..|...+..+++|+.|+|++|++++..+.
T Consensus        14 ~~l~~s~n~l~~----------------iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~   75 (220)
T 2v70_A           14 TTVDCSNQKLNK----------------IPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEG   75 (220)
T ss_dssp             TEEECCSSCCSS----------------CCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTT
T ss_pred             CEeEeCCCCccc----------------CccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHH
Confidence            578888888875                444432  45789999999998655655555799999999999999988888


Q ss_pred             cccCCCCCCEEEccCCcCcccCCchhhccccccccccccCCCCcccccccccccccceeeEEEEeccchhhcccccceeE
Q 046398          531 QLCRLTSLQILDVANNSLSGTMPGCVNNFSAMATIDSSHQSNAMSYFEVTAYDCEVLEDASIVMKGSMVEYNSILNLVRI  610 (794)
Q Consensus       531 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~  610 (794)
                      .|..+++|++|+|++|++++..+..|.++++|                                              ++
T Consensus        76 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L----------------------------------------------~~  109 (220)
T 2v70_A           76 AFEGASGVNEILLTSNRLENVQHKMFKGLESL----------------------------------------------KT  109 (220)
T ss_dssp             TTTTCTTCCEEECCSSCCCCCCGGGGTTCSSC----------------------------------------------CE
T ss_pred             HhCCCCCCCEEECCCCccCccCHhHhcCCcCC----------------------------------------------CE
Confidence            99999999999999999998777777665555                                              88


Q ss_pred             EEcCCCccccccChhhhcccCCCEEecccccccccCCccccccCCCCEEeCCCCcCcccCc
Q 046398          611 IDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQIPENIGNLISIESLDFSTNQLSSKIS  671 (794)
Q Consensus       611 LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p  671 (794)
                      |+|++|++++..|..+..+++|+.|+|++|++++..|..|..+++|+.|+|++|++.+..+
T Consensus       110 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~  170 (220)
T 2v70_A          110 LMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCY  170 (220)
T ss_dssp             EECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred             EECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence            9999999999889999999999999999999998889999999999999999999987654

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.76  E-value=4.5e-18  Score=167.35  Aligned_cols=180  Identities=23%  Similarity=0.257  Sum_probs=103.3

Q ss_pred             CEEeCCCCCCCCCCCCcccCCCCCCCEEEcCCCCCCCCCcccccCCccccccccCccccccccccccccccCCCCccCCC
Q 046398          120 THLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRCLDLSWSEYALQVHSFSWLSGQIPNRLGNL  199 (794)
Q Consensus       120 ~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~~~~lp~~l~~l  199 (794)
                      +.++.+++.++  .+|..+  .++|++|++++|++++..+..++++++|++|++++|.+.          +..+..+.++
T Consensus        10 ~~v~c~~~~l~--~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~----------~~~~~~~~~l   75 (208)
T 2o6s_A           10 TTVECYSQGRT--SVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ----------SLPNGVFNKL   75 (208)
T ss_dssp             TEEECCSSCCS--SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC----------CCCTTTTTTC
T ss_pred             CEEEecCCCcc--CCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccC----------ccChhhcCCC
Confidence            34555555555  344433  346666666666666555555566666666666655532          2222335566


Q ss_pred             CCCCEEECcCCCCCCCCCccccCCCCCCeEeeeccCCCCCCCccccCCCCCCcEEEccCCCCCCCCCchhhhccCCCCEE
Q 046398          200 TSLRHLDLSANKFNSTTAGWLSKFNHLEFLSLSSNGLQGTISSIGLENLTSIKTIDLSLNFELGGPIPTSFVRLCELTSI  279 (794)
Q Consensus       200 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L  279 (794)
                      ++|++|++++|++++..+..+..+++|++|++++|.+++..+. .+.++++|++|+++ ++.+++..+..+..+++|+.|
T Consensus        76 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~l~-~N~l~~~~~~~~~~l~~L~~L  153 (208)
T 2o6s_A           76 TSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDG-VFDKLTQLKDLRLY-QNQLKSVPDGVFDRLTSLQYI  153 (208)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT-TTTTCTTCCEEECC-SSCCSCCCTTTTTTCTTCCEE
T ss_pred             CCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHh-HhccCCcCCEEECC-CCccceeCHHHhccCCCccEE
Confidence            6666666666666666665566666666666666666633322 45666666666666 445555444456666666666


Q ss_pred             EccCCCCCcchHHHHHhhhhcCcCCccEEEeecccccccccccccCCC
Q 046398          280 DVSDVKLSQDLSQVLDILSACGASALESLVFSSSQISGHLTSQLGQFK  327 (794)
Q Consensus       280 ~l~~~~l~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~  327 (794)
                      ++++|.+.+..            +.|++|+++.|+++|.+|..++.++
T Consensus       154 ~l~~N~~~~~~------------~~l~~L~~~~n~~~g~ip~~~~~l~  189 (208)
T 2o6s_A          154 WLHDNPWDCTC------------PGIRYLSEWINKHSGVVRNSAGSVA  189 (208)
T ss_dssp             ECCSCCBCCCT------------TTTHHHHHHHHHCTTTBBCTTSSBC
T ss_pred             EecCCCeecCC------------CCHHHHHHHHHhCCceeeccCcccc
Confidence            66666554322            2455555566666666665555443

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.76  E-value=2.4e-18  Score=184.57  Aligned_cols=177  Identities=23%  Similarity=0.287  Sum_probs=138.3

Q ss_pred             CEEeccCCCCCCCcchhHHhccccceeccCcccCCCCCCCEEEccCCcccccCChhhhh-cCCCCcEEEcccccccccCC
Q 046398          451 SVLDISNARISDTIPRWFWNSIFQLSGIIPESFKNFSNLEVLNLGDNEFVGKIPTWMGE-GFTSLLILILRSNKFDGFLP  529 (794)
Q Consensus       451 ~~L~Ls~n~l~~~~p~~~~~~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~-~l~~L~~L~L~~n~l~~~~p  529 (794)
                      +.+++++++++.                +|..+.  +.++.|+|++|++++ ++...+. .+++|+.|+|++|++++..+
T Consensus        21 ~~l~c~~~~l~~----------------iP~~~~--~~l~~L~Ls~N~l~~-l~~~~~~~~l~~L~~L~L~~N~i~~i~~   81 (361)
T 2xot_A           21 NILSCSKQQLPN----------------VPQSLP--SYTALLDLSHNNLSR-LRAEWTPTRLTNLHSLLLSHNHLNFISS   81 (361)
T ss_dssp             TEEECCSSCCSS----------------CCSSCC--TTCSEEECCSSCCCE-ECTTSSSSCCTTCCEEECCSSCCCEECT
T ss_pred             CEEEeCCCCcCc----------------cCccCC--CCCCEEECCCCCCCc-cChhhhhhcccccCEEECCCCcCCccCh
Confidence            577888887775                444332  457889999998884 4444443 68889999999999988877


Q ss_pred             ccccCCCCCCEEEccCCcCcccCCchhhccccccccccccCCCCcccccccccccccceeeEEEEeccchhhccccccee
Q 046398          530 IQLCRLTSLQILDVANNSLSGTMPGCVNNFSAMATIDSSHQSNAMSYFEVTAYDCEVLEDASIVMKGSMVEYNSILNLVR  609 (794)
Q Consensus       530 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~  609 (794)
                      ..|..+++|++|+|++|++++..+..|.++++|                                              +
T Consensus        82 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L----------------------------------------------~  115 (361)
T 2xot_A           82 EAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQAL----------------------------------------------E  115 (361)
T ss_dssp             TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTC----------------------------------------------C
T ss_pred             hhccCCCCCCEEECCCCcCCcCCHHHhCCCcCC----------------------------------------------C
Confidence            888889999999999999887666666555444                                              8


Q ss_pred             EEEcCCCccccccChhhhcccCCCEEecccccccccCCcc-c---cccCCCCEEeCCCCcCcccCcccccCCCC--CCEE
Q 046398          610 IIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQIPEN-I---GNLISIESLDFSTNQLSSKISQSMSSLSF--LNHL  683 (794)
Q Consensus       610 ~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~-l---~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~--L~~L  683 (794)
                      .|+|++|++++..|..|..+++|+.|+|++|+|++ +|.. +   ..+++|+.|||++|++++..+..+..++.  ++.|
T Consensus       116 ~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l  194 (361)
T 2xot_A          116 VLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISR-FPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGL  194 (361)
T ss_dssp             EEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCS-CCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTE
T ss_pred             EEECCCCcccEECHHHhCCcccCCEEECCCCcCCe-eCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceE
Confidence            88999999988888889999999999999999984 5544 4   67899999999999999877777888877  4889


Q ss_pred             eCcCCccccc
Q 046398          684 NVSNNLLTGK  693 (794)
Q Consensus       684 ~ls~N~l~g~  693 (794)
                      ++++|++...
T Consensus       195 ~l~~N~~~C~  204 (361)
T 2xot_A          195 YLHNNPLECD  204 (361)
T ss_dssp             ECCSSCEECC
T ss_pred             EecCCCccCC
Confidence            9999988753

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.74  E-value=1.2e-17  Score=173.26  Aligned_cols=173  Identities=21%  Similarity=0.323  Sum_probs=138.1

Q ss_pred             CCCCCCCEEeccCCCCCCCcchhHHhccccceeccCcccCCCCCCCEEEccCCcccccCChhhhhcCCCCcEEEcccccc
Q 046398          445 HSQKNLSVLDISNARISDTIPRWFWNSIFQLSGIIPESFKNFSNLEVLNLGDNEFVGKIPTWMGEGFTSLLILILRSNKF  524 (794)
Q Consensus       445 ~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l  524 (794)
                      ..+++|+.|++++|.+.+                ++ .+..+++|++|++++|++++ ++. +. .+++|+.|++++|++
T Consensus        43 ~~l~~L~~L~l~~~~i~~----------------~~-~~~~l~~L~~L~L~~n~l~~-~~~-l~-~l~~L~~L~l~~n~l  102 (291)
T 1h6t_A           43 NELNSIDQIIANNSDIKS----------------VQ-GIQYLPNVTKLFLNGNKLTD-IKP-LA-NLKNLGWLFLDENKV  102 (291)
T ss_dssp             HHHHTCCEEECTTSCCCC----------------CT-TGGGCTTCCEEECCSSCCCC-CGG-GT-TCTTCCEEECCSSCC
T ss_pred             hhcCcccEEEccCCCccc----------------Ch-hHhcCCCCCEEEccCCccCC-Ccc-cc-cCCCCCEEECCCCcC
Confidence            346778888888888775                22 36678889999999998884 444 43 688999999999988


Q ss_pred             cccCCccccCCCCCCEEEccCCcCcccCCchhhccccccccccccCCCCcccccccccccccceeeEEEEeccchhhccc
Q 046398          525 DGFLPIQLCRLTSLQILDVANNSLSGTMPGCVNNFSAMATIDSSHQSNAMSYFEVTAYDCEVLEDASIVMKGSMVEYNSI  604 (794)
Q Consensus       525 ~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  604 (794)
                      ++.  ..+..+++|++|++++|++++.  ..+..                                              
T Consensus       103 ~~~--~~l~~l~~L~~L~L~~n~i~~~--~~l~~----------------------------------------------  132 (291)
T 1h6t_A          103 KDL--SSLKDLKKLKSLSLEHNGISDI--NGLVH----------------------------------------------  132 (291)
T ss_dssp             CCG--GGGTTCTTCCEEECTTSCCCCC--GGGGG----------------------------------------------
T ss_pred             CCC--hhhccCCCCCEEECCCCcCCCC--hhhcC----------------------------------------------
Confidence            763  3488899999999999988753  22332                                              


Q ss_pred             ccceeEEEcCCCccccccChhhhcccCCCEEecccccccccCCccccccCCCCEEeCCCCcCcccCcccccCCCCCCEEe
Q 046398          605 LNLVRIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQIPENIGNLISIESLDFSTNQLSSKISQSMSSLSFLNHLN  684 (794)
Q Consensus       605 l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~  684 (794)
                      ++.|+.|++++|++++.  ..+..+++|++|++++|++++..|  +..+++|+.|++++|++++. | .+..+++|+.|+
T Consensus       133 l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~l-~-~l~~l~~L~~L~  206 (291)
T 1h6t_A          133 LPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLE  206 (291)
T ss_dssp             CTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEE
T ss_pred             CCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCCC-h-hhccCCCCCEEE
Confidence            34458899999999865  578899999999999999996544  89999999999999999874 4 489999999999


Q ss_pred             CcCCccccc
Q 046398          685 VSNNLLTGK  693 (794)
Q Consensus       685 ls~N~l~g~  693 (794)
                      +++|+++..
T Consensus       207 l~~n~i~~~  215 (291)
T 1h6t_A          207 LFSQECLNK  215 (291)
T ss_dssp             EEEEEEECC
T ss_pred             CcCCcccCC
Confidence            999999863

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.73  E-value=2.1e-17  Score=163.73  Aligned_cols=154  Identities=16%  Similarity=0.234  Sum_probs=129.7

Q ss_pred             CEEeccCCCCCCCcchhHHhccccceeccCcccCCCCCCCEEEccCCcccccCChhhhhcCCCCcEEEcccccccccCCc
Q 046398          451 SVLDISNARISDTIPRWFWNSIFQLSGIIPESFKNFSNLEVLNLGDNEFVGKIPTWMGEGFTSLLILILRSNKFDGFLPI  530 (794)
Q Consensus       451 ~~L~Ls~n~l~~~~p~~~~~~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~  530 (794)
                      +.++++++.++.                +|..+.  ++|+.|++++|+++ .++...+..+++|+.|+|++|++++..|.
T Consensus        14 ~~v~c~~~~l~~----------------iP~~l~--~~l~~L~l~~n~i~-~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~   74 (220)
T 2v9t_B           14 NIVDCRGKGLTE----------------IPTNLP--ETITEIRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQISELAPD   74 (220)
T ss_dssp             TEEECTTSCCSS----------------CCSSCC--TTCCEEECCSSCCC-EECTTSSTTCTTCCEEECCSSCCCEECTT
T ss_pred             CEEEcCCCCcCc----------------CCCccC--cCCCEEECCCCcCC-CcCHhHhhCCCCCCEEECCCCcCCCcCHH
Confidence            577888888775                454443  68999999999998 45554444789999999999999988899


Q ss_pred             cccCCCCCCEEEccCCcCcccCCchhhccccccccccccCCCCcccccccccccccceeeEEEEeccchhhcccccceeE
Q 046398          531 QLCRLTSLQILDVANNSLSGTMPGCVNNFSAMATIDSSHQSNAMSYFEVTAYDCEVLEDASIVMKGSMVEYNSILNLVRI  610 (794)
Q Consensus       531 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~  610 (794)
                      .|..+++|++|+|++|+++...+..|.++++|                                              +.
T Consensus        75 ~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L----------------------------------------------~~  108 (220)
T 2v9t_B           75 AFQGLRSLNSLVLYGNKITELPKSLFEGLFSL----------------------------------------------QL  108 (220)
T ss_dssp             TTTTCSSCCEEECCSSCCCCCCTTTTTTCTTC----------------------------------------------CE
T ss_pred             HhhCCcCCCEEECCCCcCCccCHhHccCCCCC----------------------------------------------CE
Confidence            99999999999999999986655555555444                                              88


Q ss_pred             EEcCCCccccccChhhhcccCCCEEecccccccccCCccccccCCCCEEeCCCCcCccc
Q 046398          611 IDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQIPENIGNLISIESLDFSTNQLSSK  669 (794)
Q Consensus       611 LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~  669 (794)
                      |+|++|++++..|..+..+++|++|+|++|++++..+..|..+++|+.|+|++|++...
T Consensus       109 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~  167 (220)
T 2v9t_B          109 LLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICD  167 (220)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECS
T ss_pred             EECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCC
Confidence            99999999988899999999999999999999987778899999999999999999763

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.73  E-value=2.1e-17  Score=164.96  Aligned_cols=164  Identities=21%  Similarity=0.262  Sum_probs=127.4

Q ss_pred             CCCCCCCCcceeeeEecCCCCcEEEEEcCCCCCccccccchhhhhccccccceeecccccCCCCCCEEeCCCCCCCCCCC
Q 046398           55 SWVVDGDCCKWAEVVCSNLTGHVLQLSLRNPFRNDLRYATTEYEDYMRSMLSGNVNPSLVDLKHLTHLDLSGNDFQGIRI  134 (794)
Q Consensus        55 ~W~~~~~~c~w~gv~c~~~~~~v~~L~l~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~l~~l~~L~~L~Ls~n~l~~~~~  134 (794)
                      .|+.+...|.|++|.|....                              + +.+|..+.  ++|++|+|++|.+++. .
T Consensus        11 ~~~~~~~~Cs~~~v~c~~~~------------------------------l-~~ip~~~~--~~L~~L~Ls~n~i~~~-~   56 (229)
T 3e6j_A           11 AACPSQCSCSGTTVDCRSKR------------------------------H-ASVPAGIP--TNAQILYLHDNQITKL-E   56 (229)
T ss_dssp             CCCCTTCEEETTEEECTTSC------------------------------C-SSCCSCCC--TTCSEEECCSSCCCCC-C
T ss_pred             ccCCCCCEEeCCEeEccCCC------------------------------c-CccCCCCC--CCCCEEEcCCCccCcc-C
Confidence            34457788999999996421                              1 22333332  7899999999999875 6


Q ss_pred             CcccCCCCCCCEEEcCCCCCCCCCcccccCCccccccccCccccccccccccccccCCCCccCCCCCCCEEECcCCCCCC
Q 046398          135 PKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRCLDLSWSEYALQVHSFSWLSGQIPNRLGNLTSLRHLDLSANKFNS  214 (794)
Q Consensus       135 p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~~~~lp~~l~~l~~L~~L~Ls~n~l~~  214 (794)
                      |..+..+++|++|+|++|+++...+..|..+++|++|+|++|.+.          +..+..+..+++|++|++++|+++ 
T Consensus        57 ~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~----------~l~~~~~~~l~~L~~L~Ls~N~l~-  125 (229)
T 3e6j_A           57 PGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLT----------VLPSAVFDRLVHLKELFMCCNKLT-  125 (229)
T ss_dssp             TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC----------CCCTTTTTTCTTCCEEECCSSCCC-
T ss_pred             HHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCC----------ccChhHhCcchhhCeEeccCCccc-
Confidence            788889999999999999998666677889999999999988754          333455788999999999999998 


Q ss_pred             CCCccccCCCCCCeEeeeccCCCCCCCccccCCCCCCcEEEccCCCCCCCC
Q 046398          215 TTAGWLSKFNHLEFLSLSSNGLQGTISSIGLENLTSIKTIDLSLNFELGGP  265 (794)
Q Consensus       215 ~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~~~~~~~~  265 (794)
                      .+|..+..+++|++|++++|.+++ ++...+..+++|++|+++ +|.+...
T Consensus       126 ~lp~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~l~-~N~~~c~  174 (229)
T 3e6j_A          126 ELPRGIERLTHLTHLALDQNQLKS-IPHGAFDRLSSLTHAYLF-GNPWDCE  174 (229)
T ss_dssp             SCCTTGGGCTTCSEEECCSSCCCC-CCTTTTTTCTTCCEEECT-TSCBCTT
T ss_pred             ccCcccccCCCCCEEECCCCcCCc-cCHHHHhCCCCCCEEEee-CCCccCC
Confidence            456678889999999999999984 444478889999999998 5555544

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.73  E-value=1.4e-17  Score=172.59  Aligned_cols=170  Identities=21%  Similarity=0.328  Sum_probs=126.8

Q ss_pred             ccceEecccccCCCCCCcccCCCCCCCEEeccCCCCCCCcchhHHhccccceeccCcccCCCCCCCEEEccCCcccccCC
Q 046398          425 QLKTLLLMSCHLGPQFPSWLHSQKNLSVLDISNARISDTIPRWFWNSIFQLSGIIPESFKNFSNLEVLNLGDNEFVGKIP  504 (794)
Q Consensus       425 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip  504 (794)
                      +|+.|++++|.+... + .+..+++|++|++++|++++                ++. +..+++|++|++++|+++ .+|
T Consensus        47 ~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~----------------~~~-l~~l~~L~~L~l~~n~l~-~~~  106 (291)
T 1h6t_A           47 SIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTD----------------IKP-LANLKNLGWLFLDENKVK-DLS  106 (291)
T ss_dssp             TCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCC----------------CGG-GTTCTTCCEEECCSSCCC-CGG
T ss_pred             cccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCC----------------Ccc-cccCCCCCEEECCCCcCC-CCh
Confidence            344444444444332 2 26667888888888888776                233 778888888999988887 354


Q ss_pred             hhhhhcCCCCcEEEcccccccccCCccccCCCCCCEEEccCCcCcccCCchhhccccccccccccCCCCccccccccccc
Q 046398          505 TWMGEGFTSLLILILRSNKFDGFLPIQLCRLTSLQILDVANNSLSGTMPGCVNNFSAMATIDSSHQSNAMSYFEVTAYDC  584 (794)
Q Consensus       505 ~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~  584 (794)
                      . +. .+++|+.|++++|++++.  ..+..+++|++|++++|++++.  ..+..                          
T Consensus       107 ~-l~-~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~--------------------------  154 (291)
T 1h6t_A          107 S-LK-DLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSR--------------------------  154 (291)
T ss_dssp             G-GT-TCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGG--------------------------
T ss_pred             h-hc-cCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhcc--------------------------
Confidence            4 33 688899999999988864  4678889999999999988753  23333                          


Q ss_pred             ccceeeEEEEeccchhhcccccceeEEEcCCCccccccChhhhcccCCCEEecccccccccCCccccccCCCCEEeCCCC
Q 046398          585 EVLEDASIVMKGSMVEYNSILNLVRIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQIPENIGNLISIESLDFSTN  664 (794)
Q Consensus       585 ~~l~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N  664 (794)
                                          +++|+.|++++|++++..|  +..+++|+.|+|++|++++ +| .+..+++|+.|++++|
T Consensus       155 --------------------l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~-l~-~l~~l~~L~~L~l~~n  210 (291)
T 1h6t_A          155 --------------------LTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQ  210 (291)
T ss_dssp             --------------------CTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEEE
T ss_pred             --------------------CCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCC-Ch-hhccCCCCCEEECcCC
Confidence                                3345889999999986555  8889999999999999985 45 4899999999999999


Q ss_pred             cCcccC
Q 046398          665 QLSSKI  670 (794)
Q Consensus       665 ~l~~~~  670 (794)
                      +++...
T Consensus       211 ~i~~~~  216 (291)
T 1h6t_A          211 ECLNKP  216 (291)
T ss_dssp             EEECCC
T ss_pred             cccCCc
Confidence            988643

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.73  E-value=2e-17  Score=161.04  Aligned_cols=154  Identities=15%  Similarity=0.235  Sum_probs=119.4

Q ss_pred             CCCCCCCEEEccCCcccccCChhhhhcCCCCcEEEcccccccccCCccccCCCCCCEEEccCCcCcccCCchhhcccccc
Q 046398          484 KNFSNLEVLNLGDNEFVGKIPTWMGEGFTSLLILILRSNKFDGFLPIQLCRLTSLQILDVANNSLSGTMPGCVNNFSAMA  563 (794)
Q Consensus       484 ~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~  563 (794)
                      ..+++|+.|++++|+++ .+| .+. .+++|++|++++|.++.  +..+..+++|++|++++|++++..|..+..+++| 
T Consensus        41 ~~l~~L~~L~l~~n~i~-~l~-~l~-~l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L-  114 (197)
T 4ezg_A           41 AQMNSLTYITLANINVT-DLT-GIE-YAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSL-  114 (197)
T ss_dssp             HHHHTCCEEEEESSCCS-CCT-TGG-GCTTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTC-
T ss_pred             hhcCCccEEeccCCCcc-ChH-HHh-cCCCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCcccChhhcCCCCC-
Confidence            45677888888888887 666 343 68888888888886653  3467888888888888888887666665554444 


Q ss_pred             ccccccCCCCcccccccccccccceeeEEEEeccchhhcccccceeEEEcCCCccccccChhhhcccCCCEEeccccc-c
Q 046398          564 TIDSSHQSNAMSYFEVTAYDCEVLEDASIVMKGSMVEYNSILNLVRIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNI-F  642 (794)
Q Consensus       564 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~-l  642 (794)
                                                                   +.|++++|++++..|..++.+++|++|++++|+ +
T Consensus       115 ---------------------------------------------~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i  149 (197)
T 4ezg_A          115 ---------------------------------------------TLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAI  149 (197)
T ss_dssp             ---------------------------------------------CEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBC
T ss_pred             ---------------------------------------------CEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCc
Confidence                                                         788899999888888888999999999999998 5


Q ss_pred             cccCCccccccCCCCEEeCCCCcCcccCcccccCCCCCCEEeCcCCcccc
Q 046398          643 TGQIPENIGNLISIESLDFSTNQLSSKISQSMSSLSFLNHLNVSNNLLTG  692 (794)
Q Consensus       643 ~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g  692 (794)
                      + .+| .+..+++|+.|++++|++++. + .+..+++|++|++++|++.+
T Consensus       150 ~-~~~-~l~~l~~L~~L~l~~n~i~~~-~-~l~~l~~L~~L~l~~N~i~~  195 (197)
T 4ezg_A          150 T-DIM-PLKTLPELKSLNIQFDGVHDY-R-GIEDFPKLNQLYAFSQTIGG  195 (197)
T ss_dssp             C-CCG-GGGGCSSCCEEECTTBCCCCC-T-TGGGCSSCCEEEECBC----
T ss_pred             c-ccH-hhcCCCCCCEEECCCCCCcCh-H-HhccCCCCCEEEeeCcccCC
Confidence            5 566 688999999999999999873 3 68889999999999998764

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.72  E-value=1.7e-17  Score=188.57  Aligned_cols=78  Identities=21%  Similarity=0.335  Sum_probs=39.1

Q ss_pred             eEEEcCCCccccccChhhhcccCCCEEecccccccccCCccccccCCCCEEeCCCCcCcccCcccccCCCCCCEEeCcCC
Q 046398          609 RIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQIPENIGNLISIESLDFSTNQLSSKISQSMSSLSFLNHLNVSNN  688 (794)
Q Consensus       609 ~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N  688 (794)
                      +.|+|++|++++.  ..+..+++|+.|+|++|++++..|  +..+++|+.|+|++|++++.  ..+..+++|+.|+|++|
T Consensus       134 ~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N  207 (605)
T 1m9s_A          134 ESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQ  207 (605)
T ss_dssp             SEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSE
T ss_pred             CEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCC
Confidence            4555555555432  344555555555555555554333  45555555555555555542  23455555555555555


Q ss_pred             cccc
Q 046398          689 LLTG  692 (794)
Q Consensus       689 ~l~g  692 (794)
                      ++++
T Consensus       208 ~l~~  211 (605)
T 1m9s_A          208 ECLN  211 (605)
T ss_dssp             EEEC
T ss_pred             cCcC
Confidence            5544

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.71  E-value=1.9e-17  Score=160.26  Aligned_cols=88  Identities=20%  Similarity=0.268  Sum_probs=62.4

Q ss_pred             eEEEcCCCccccccChhhhcccCCCEEecccccccccCCccccccCCCCEEeCCCCcCcccCcccccCCCCCCEEeCcCC
Q 046398          609 RIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQIPENIGNLISIESLDFSTNQLSSKISQSMSSLSFLNHLNVSNN  688 (794)
Q Consensus       609 ~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N  688 (794)
                      +.|++++|++++..|..+..+++|++|+|++|++++..|..|.++++|+.|+|++|++++.+|..+..+++|++|++++|
T Consensus        57 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N  136 (192)
T 1w8a_A           57 VKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN  136 (192)
T ss_dssp             CEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTC
T ss_pred             CEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCC
Confidence            55566666666566666667777777777777777666666777777777777777777777777777777777777777


Q ss_pred             cccccCCC
Q 046398          689 LLTGKIPS  696 (794)
Q Consensus       689 ~l~g~iP~  696 (794)
                      ++++..|.
T Consensus       137 ~l~c~c~l  144 (192)
T 1w8a_A          137 PFNCNCHL  144 (192)
T ss_dssp             CBCCSGGG
T ss_pred             CccCcCcc
Confidence            77776653

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.70  E-value=5e-17  Score=158.18  Aligned_cols=155  Identities=19%  Similarity=0.260  Sum_probs=124.2

Q ss_pred             CCCCCCCEEeccCCCCCCCcchhHHhccccceeccCcccCCCCCCCEEEccCCcccccCChhhhhcCCCCcEEEcccccc
Q 046398          445 HSQKNLSVLDISNARISDTIPRWFWNSIFQLSGIIPESFKNFSNLEVLNLGDNEFVGKIPTWMGEGFTSLLILILRSNKF  524 (794)
Q Consensus       445 ~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l  524 (794)
                      ..+++|+.|++++|.++.                +| .+..+++|++|++++|.++ .++ .+. .+++|++|++++|++
T Consensus        41 ~~l~~L~~L~l~~n~i~~----------------l~-~l~~l~~L~~L~l~~n~~~-~~~-~l~-~l~~L~~L~l~~n~l  100 (197)
T 4ezg_A           41 AQMNSLTYITLANINVTD----------------LT-GIEYAHNIKDLTINNIHAT-NYN-PIS-GLSNLERLRIMGKDV  100 (197)
T ss_dssp             HHHHTCCEEEEESSCCSC----------------CT-TGGGCTTCSEEEEESCCCS-CCG-GGT-TCTTCCEEEEECTTC
T ss_pred             hhcCCccEEeccCCCccC----------------hH-HHhcCCCCCEEEccCCCCC-cch-hhh-cCCCCCEEEeECCcc
Confidence            456778889999988874                44 5778889999999999775 333 444 689999999999999


Q ss_pred             cccCCccccCCCCCCEEEccCCcCcccCCchhhccccccccccccCCCCcccccccccccccceeeEEEEeccchhhccc
Q 046398          525 DGFLPIQLCRLTSLQILDVANNSLSGTMPGCVNNFSAMATIDSSHQSNAMSYFEVTAYDCEVLEDASIVMKGSMVEYNSI  604 (794)
Q Consensus       525 ~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  604 (794)
                      ++..+..+..+++|++|++++|++++..|..+..+++|                                          
T Consensus       101 ~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L------------------------------------------  138 (197)
T 4ezg_A          101 TSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKV------------------------------------------  138 (197)
T ss_dssp             BGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSC------------------------------------------
T ss_pred             CcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCC------------------------------------------
Confidence            98788889999999999999999987777666655444                                          


Q ss_pred             ccceeEEEcCCCccccccChhhhcccCCCEEecccccccccCCccccccCCCCEEeCCCCcCcc
Q 046398          605 LNLVRIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQIPENIGNLISIESLDFSTNQLSS  668 (794)
Q Consensus       605 l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~  668 (794)
                          +.|++++|++.+.+| .+..+++|+.|++++|++++ ++ .+..+++|+.|++++|++.+
T Consensus       139 ----~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i~~  195 (197)
T 4ezg_A          139 ----NSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTIGG  195 (197)
T ss_dssp             ----CEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC----
T ss_pred             ----CEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcccCC
Confidence                889999998333566 68999999999999999985 55 78999999999999999864

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.70  E-value=2.8e-17  Score=167.66  Aligned_cols=170  Identities=22%  Similarity=0.309  Sum_probs=138.0

Q ss_pred             CCCCCEEeccCCCCCCCcchhHHhccccceeccCcccCCCCCCCEEEccCCcccccCChhhhhcCCCCcEEEcccccccc
Q 046398          447 QKNLSVLDISNARISDTIPRWFWNSIFQLSGIIPESFKNFSNLEVLNLGDNEFVGKIPTWMGEGFTSLLILILRSNKFDG  526 (794)
Q Consensus       447 l~~L~~L~Ls~n~l~~~~p~~~~~~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~  526 (794)
                      +.++..+++++|.+++                ++ .+..+++|++|++++|+++ .+| .+. .+++|+.|++++|++++
T Consensus        18 l~~l~~l~l~~~~i~~----------------~~-~~~~l~~L~~L~l~~n~i~-~l~-~l~-~l~~L~~L~L~~N~i~~   77 (263)
T 1xeu_A           18 LANAVKQNLGKQSVTD----------------LV-SQKELSGVQNFNGDNSNIQ-SLA-GMQ-FFTNLKELHLSHNQISD   77 (263)
T ss_dssp             HHHHHHHHHTCSCTTS----------------EE-CHHHHTTCSEEECTTSCCC-CCT-TGG-GCTTCCEEECCSSCCCC
T ss_pred             HHHHHHHHhcCCCccc----------------cc-chhhcCcCcEEECcCCCcc-cch-HHh-hCCCCCEEECCCCccCC
Confidence            4456677777777765                22 4567789999999999987 677 344 68999999999999987


Q ss_pred             cCCccccCCCCCCEEEccCCcCcccCCchhhccccccccccccCCCCcccccccccccccceeeEEEEeccchhhccccc
Q 046398          527 FLPIQLCRLTSLQILDVANNSLSGTMPGCVNNFSAMATIDSSHQSNAMSYFEVTAYDCEVLEDASIVMKGSMVEYNSILN  606 (794)
Q Consensus       527 ~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~  606 (794)
                      ..+  +..+++|++|++++|++++. |....                                                +
T Consensus        78 ~~~--l~~l~~L~~L~L~~N~l~~l-~~~~~------------------------------------------------~  106 (263)
T 1xeu_A           78 LSP--LKDLTKLEELSVNRNRLKNL-NGIPS------------------------------------------------A  106 (263)
T ss_dssp             CGG--GTTCSSCCEEECCSSCCSCC-TTCCC------------------------------------------------S
T ss_pred             Chh--hccCCCCCEEECCCCccCCc-Ccccc------------------------------------------------C
Confidence            654  88999999999999998752 21110                                                3


Q ss_pred             ceeEEEcCCCccccccChhhhcccCCCEEecccccccccCCccccccCCCCEEeCCCCcCcccCcccccCCCCCCEEeCc
Q 046398          607 LVRIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQIPENIGNLISIESLDFSTNQLSSKISQSMSSLSFLNHLNVS  686 (794)
Q Consensus       607 ~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls  686 (794)
                      .|+.|++++|++++ ++ .+..+++|+.|+|++|++++. | .++.+++|+.|++++|++++.  ..+..+++|+.|+++
T Consensus       107 ~L~~L~L~~N~l~~-~~-~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~  180 (263)
T 1xeu_A          107 CLSRLFLDNNELRD-TD-SLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLT  180 (263)
T ss_dssp             SCCEEECCSSCCSB-SG-GGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEE
T ss_pred             cccEEEccCCccCC-Ch-hhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCC
Confidence            45899999999986 33 689999999999999999954 4 689999999999999999987  678999999999999


Q ss_pred             CCccccc
Q 046398          687 NNLLTGK  693 (794)
Q Consensus       687 ~N~l~g~  693 (794)
                      +|++++.
T Consensus       181 ~N~~~~~  187 (263)
T 1xeu_A          181 GQKCVNE  187 (263)
T ss_dssp             EEEEECC
T ss_pred             CCcccCC
Confidence            9999877

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.70  E-value=7.6e-17  Score=183.26  Aligned_cols=191  Identities=24%  Similarity=0.343  Sum_probs=112.0

Q ss_pred             CCCEEEccCCcccccCCccccCCCCCCeEeccCcccccccChhhhcCCCCCCEEECcCCcceeEcCCCCcCccccceEec
Q 046398          352 SLTRLDLSRNMLNGSIPLSLGKISHLEYLDLSNNKMNGTLSEIHFVNLTKLTWFSASGNSLILQVNPNWVPPFQLKTLLL  431 (794)
Q Consensus       352 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L  431 (794)
                      .+..+.+..+.+.+..+  +..+++|+.|++++|.+. .++  .+..+++|+.|++++|.+.+..               
T Consensus        22 ~l~~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~-~l~--~l~~l~~L~~L~Ls~N~l~~~~---------------   81 (605)
T 1m9s_A           22 ETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SVQ--GIQYLPNVTKLFLNGNKLTDIK---------------   81 (605)
T ss_dssp             HHHHHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCC-CCT--TGGGCTTCCEEECTTSCCCCCG---------------
T ss_pred             HHHHHhccCCCcccccc--hhcCCCCCEEECcCCCCC-CCh--HHccCCCCCEEEeeCCCCCCCh---------------
Confidence            34455566666654333  456677788888877776 343  3566666666666666554322               


Q ss_pred             ccccCCCCCCcccCCCCCCCEEeccCCCCCCCcchhHHhccccceeccCcccCCCCCCCEEEccCCcccccCChhhhhcC
Q 046398          432 MSCHLGPQFPSWLHSQKNLSVLDISNARISDTIPRWFWNSIFQLSGIIPESFKNFSNLEVLNLGDNEFVGKIPTWMGEGF  511 (794)
Q Consensus       432 ~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l  511 (794)
                               +  +..+++|+.|+|++|++.+                +| .+..+++|+.|+|++|++.+ ++. +. .+
T Consensus        82 ---------~--l~~l~~L~~L~Ls~N~l~~----------------l~-~l~~l~~L~~L~Ls~N~l~~-l~~-l~-~l  130 (605)
T 1m9s_A           82 ---------P--LTNLKNLGWLFLDENKIKD----------------LS-SLKDLKKLKSLSLEHNGISD-ING-LV-HL  130 (605)
T ss_dssp             ---------G--GGGCTTCCEEECCSSCCCC----------------CT-TSTTCTTCCEEECTTSCCCC-CGG-GG-GC
T ss_pred             ---------h--hccCCCCCEEECcCCCCCC----------------Ch-hhccCCCCCEEEecCCCCCC-Ccc-cc-CC
Confidence                     2  4555666666666666553                22 45566666666666666653 332 32 46


Q ss_pred             CCCcEEEcccccccccCCccccCCCCCCEEEccCCcCcccCCchhhccccccccccccCCCCcccccccccccccceeeE
Q 046398          512 TSLLILILRSNKFDGFLPIQLCRLTSLQILDVANNSLSGTMPGCVNNFSAMATIDSSHQSNAMSYFEVTAYDCEVLEDAS  591 (794)
Q Consensus       512 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~  591 (794)
                      ++|+.|+|++|++++.  ..+..+++|+.|+|++|++++..|  +..++                               
T Consensus       131 ~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~-------------------------------  175 (605)
T 1m9s_A          131 PQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLT-------------------------------  175 (605)
T ss_dssp             TTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCT-------------------------------
T ss_pred             CccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCC-------------------------------
Confidence            6666666666666654  456666666666666666664433  33322                               


Q ss_pred             EEEeccchhhcccccceeEEEcCCCccccccChhhhcccCCCEEeccccccccc
Q 046398          592 IVMKGSMVEYNSILNLVRIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQ  645 (794)
Q Consensus       592 ~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~  645 (794)
                                     .|+.|+|++|++++.  +.+..+++|+.|+|++|++++.
T Consensus       176 ---------------~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~~  212 (605)
T 1m9s_A          176 ---------------KLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNK  212 (605)
T ss_dssp             ---------------TCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEECC
T ss_pred             ---------------CCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcCC
Confidence                           236666666666642  2466666666667766666643

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.69  E-value=1.2e-16  Score=171.44  Aligned_cols=156  Identities=21%  Similarity=0.207  Sum_probs=136.8

Q ss_pred             CCEEEccCCcccccCChhhhhcCCCCcEEEcccccccccCCcccc-CCCCCCEEEccCCcCcccCCchhhcccccccccc
Q 046398          489 LEVLNLGDNEFVGKIPTWMGEGFTSLLILILRSNKFDGFLPIQLC-RLTSLQILDVANNSLSGTMPGCVNNFSAMATIDS  567 (794)
Q Consensus       489 L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~~~-~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~  567 (794)
                      -+.+++++++++ .+|..+.   +.++.|+|++|++++..+..+. .+++|++|+|++|++++..+..|.++++|     
T Consensus        20 ~~~l~c~~~~l~-~iP~~~~---~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L-----   90 (361)
T 2xot_A           20 SNILSCSKQQLP-NVPQSLP---SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNL-----   90 (361)
T ss_dssp             TTEEECCSSCCS-SCCSSCC---TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTC-----
T ss_pred             CCEEEeCCCCcC-ccCccCC---CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCC-----
Confidence            368999999998 7887653   5799999999999988888887 99999999999999998877777665555     


Q ss_pred             ccCCCCcccccccccccccceeeEEEEeccchhhcccccceeEEEcCCCccccccChhhhcccCCCEEecccccccccCC
Q 046398          568 SHQSNAMSYFEVTAYDCEVLEDASIVMKGSMVEYNSILNLVRIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQIP  647 (794)
Q Consensus       568 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip  647 (794)
                                                               +.|||++|++++..+..|..+++|++|+|++|+|++..|
T Consensus        91 -----------------------------------------~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~  129 (361)
T 2xot_A           91 -----------------------------------------RYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDR  129 (361)
T ss_dssp             -----------------------------------------CEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECT
T ss_pred             -----------------------------------------CEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECH
Confidence                                                     899999999998878889999999999999999998889


Q ss_pred             ccccccCCCCEEeCCCCcCcccCcccc---cCCCCCCEEeCcCCcccccC
Q 046398          648 ENIGNLISIESLDFSTNQLSSKISQSM---SSLSFLNHLNVSNNLLTGKI  694 (794)
Q Consensus       648 ~~l~~l~~L~~L~Ls~N~l~~~~p~~l---~~l~~L~~L~ls~N~l~g~i  694 (794)
                      ..|.++++|+.|+|++|++++..+..+   ..+++|+.|+|++|++++..
T Consensus       130 ~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~  179 (361)
T 2xot_A          130 NAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLP  179 (361)
T ss_dssp             TTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCC
T ss_pred             HHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccC
Confidence            999999999999999999998666655   67999999999999998543

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.69  E-value=2.7e-18  Score=200.30  Aligned_cols=261  Identities=20%  Similarity=0.186  Sum_probs=110.0

Q ss_pred             CCHHHHHHHHHHHhcCCC-CCCCCCCCC-CCCCCcceeeeEecCCCCcEEEEEcCCCCCccccccchhhhhcccccccee
Q 046398           31 CTDSEREALLKLKQDLKD-PSNRLGSWV-VDGDCCKWAEVVCSNLTGHVLQLSLRNPFRNDLRYATTEYEDYMRSMLSGN  108 (794)
Q Consensus        31 ~~~~~~~~ll~~k~~~~~-~~~~~~~W~-~~~~~c~w~gv~c~~~~~~v~~L~l~~~~~~~~~~~~~~~~~~~~~~l~g~  108 (794)
                      ..+.++++|+++..+... ....-..|. .....+.|.++.++  ++++++++|.+.                  .+.. 
T Consensus       129 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s--~~~~~~l~L~~n------------------~~~~-  187 (727)
T 4b8c_D          129 LVDCTKQALMEMADTLTDSKTAKKQQPTGDSTPSGTATNSAVS--TPLTPKIELFAN------------------GKDE-  187 (727)
T ss_dssp             ---CCCHHHHHHHHHHHHHHTTC---------------------------------------------------------
T ss_pred             ccccchhhhhhhhhhcccccCcccCCCcCCCCccccCCCceec--CCccceEEeeCC------------------CCCc-
Confidence            345677899999877642 122334674 34556789998886  468999998764                  3332 


Q ss_pred             ecccccCCCCCCE-----EeCCCCCCCCCCCCcccCCCCCCCEEEcCCCCCCCCCcccccCCccccccccCccccccccc
Q 046398          109 VNPSLVDLKHLTH-----LDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRCLDLSWSEYALQVH  183 (794)
Q Consensus       109 ~~~~l~~l~~L~~-----L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~~~~~~~~~  183 (794)
                      .+..+.....|+.     ++++.|.+.  ..|..+..+++|++|+|++|.+. .+|..+.++++|++|+|++|.+.    
T Consensus       188 ~~~~~l~~l~Ls~~~i~~~~~~~n~~~--~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~----  260 (727)
T 4b8c_D          188 ANQALLQHKKLSQYSIDEDDDIENRMV--MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT----  260 (727)
T ss_dssp             ------------------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS----
T ss_pred             chhhHhhcCccCcccccCcccccccee--cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc----
Confidence            2222222222222     233334443  24677888888899999888887 67777778888888888887743    


Q ss_pred             cccccccCCCCccCCCCCCCEEECcCCCCCCCCCccccCCCCCCeEeeeccCCCCCCCccccCCCCCCcEEEccCCCCCC
Q 046398          184 SFSWLSGQIPNRLGNLTSLRHLDLSANKFNSTTAGWLSKFNHLEFLSLSSNGLQGTISSIGLENLTSIKTIDLSLNFELG  263 (794)
Q Consensus       184 ~~~~~~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~~~~~~  263 (794)
                             .+|..|+++++|++|+|++|.++ .+|..++++++|++|+|++|.++ .+|.                     
T Consensus       261 -------~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~---------------------  310 (727)
T 4b8c_D          261 -------ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPW---------------------  310 (727)
T ss_dssp             -------CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCS---------------------
T ss_pred             -------ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccCh---------------------
Confidence                   67878888888888888888887 45666777777777777777765 4444                     


Q ss_pred             CCCchhhhccCCCCEEEccCCCCCcchHHHHHhhhhcCcCCccEEEeecccccccccccccCCCCCCEEEccCC------
Q 046398          264 GPIPTSFVRLCELTSIDVSDVKLSQDLSQVLDILSACGASALESLVFSSSQISGHLTSQLGQFKSLRTLSLDDN------  337 (794)
Q Consensus       264 ~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n------  337 (794)
                           .|.++++|+.|++++|.+++.+|..+.....    ....+++++|.+++.+|.      .|+.|+++.|      
T Consensus       311 -----~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~----~~~~l~l~~N~l~~~~p~------~l~~l~l~~n~~~~~~  375 (727)
T 4b8c_D          311 -----EFGNLCNLQFLGVEGNPLEKQFLKILTEKSV----TGLIFYLRDNRPEIPLPH------ERRFIEINTDGEPQRE  375 (727)
T ss_dssp             -----STTSCTTCCCEECTTSCCCSHHHHHHHHHHH----HHHHHHHHHCCCCCCCCC------C---------------
T ss_pred             -----hhhcCCCccEEeCCCCccCCCChHHHhhcch----hhhHHhhccCcccCcCcc------ccceeEeecccccccc
Confidence                 3444455555555555566555555543321    122356677777766654      3445555555      


Q ss_pred             --cCcCCCCCCcCCCCCCCEEEccCCccc
Q 046398          338 --CISGPLPPALGDLSSLTRLDLSRNMLN  364 (794)
Q Consensus       338 --~l~~~~p~~l~~l~~L~~L~Ls~n~l~  364 (794)
                        .+.+..+..+..+..++...++.|.+.
T Consensus       376 ~~~l~~~~~~~~~~l~~~~~~~ls~Nil~  404 (727)
T 4b8c_D          376 YDSLQQSTEHLATDLAKRTFTVLSYNTLC  404 (727)
T ss_dssp             --------------------------CCC
T ss_pred             cCCccccccchhhcccccceeeeeccccc
Confidence              233333333445555666667777664

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.68  E-value=1.2e-17  Score=194.74  Aligned_cols=74  Identities=23%  Similarity=0.353  Sum_probs=37.6

Q ss_pred             ccCCCCCCCEEEccCCcccccCChhhhhcCCCCcEEEcccccccccCCccccCCCCCCEEEccCCcCcccCCchhhcc
Q 046398          482 SFKNFSNLEVLNLGDNEFVGKIPTWMGEGFTSLLILILRSNKFDGFLPIQLCRLTSLQILDVANNSLSGTMPGCVNNF  559 (794)
Q Consensus       482 ~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l  559 (794)
                      .+..+++|++|+|++|+++ .+|..+. .+++|++|+|++|+++ .+|..|..+++|++|+|++|.++ .+|..|+++
T Consensus       242 ~~~~l~~L~~L~Ls~N~l~-~lp~~~~-~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l  315 (727)
T 4b8c_D          242 NIFKYDFLTRLYLNGNSLT-ELPAEIK-NLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNL  315 (727)
T ss_dssp             GGGGCCSCSCCBCTTSCCS-CCCGGGG-GGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSC
T ss_pred             hhcCCCCCCEEEeeCCcCc-ccChhhh-CCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcC
Confidence            3334555555555555555 4554443 4555555555555555 44555555555555555555554 344444433

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.68  E-value=1e-16  Score=155.14  Aligned_cols=132  Identities=20%  Similarity=0.289  Sum_probs=108.0

Q ss_pred             CEEEccCCcccccCChhhhhcCCCCcEEEcccccccccCCc-cccCCCCCCEEEccCCcCcccCCchhhccccccccccc
Q 046398          490 EVLNLGDNEFVGKIPTWMGEGFTSLLILILRSNKFDGFLPI-QLCRLTSLQILDVANNSLSGTMPGCVNNFSAMATIDSS  568 (794)
Q Consensus       490 ~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~  568 (794)
                      +.+++++|+++ .+|..+.   .+++.|++++|++++..+. .+..+++|++|+|++|++++..|..|.++++|      
T Consensus        11 ~~l~~s~~~l~-~ip~~~~---~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L------   80 (192)
T 1w8a_A           11 TTVDCTGRGLK-EIPRDIP---LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHI------   80 (192)
T ss_dssp             TEEECTTSCCS-SCCSCCC---TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTC------
T ss_pred             CEEEcCCCCcC-cCccCCC---CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccC------
Confidence            67788888775 6776553   3788888888888766654 47788888888888888887777777665554      


Q ss_pred             cCCCCcccccccccccccceeeEEEEeccchhhcccccceeEEEcCCCccccccChhhhcccCCCEEecccccccccCCc
Q 046398          569 HQSNAMSYFEVTAYDCEVLEDASIVMKGSMVEYNSILNLVRIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQIPE  648 (794)
Q Consensus       569 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~  648 (794)
                                                              ++|+|++|++++..|..+..+++|++|+|++|++++.+|.
T Consensus        81 ----------------------------------------~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~  120 (192)
T 1w8a_A           81 ----------------------------------------QELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPG  120 (192)
T ss_dssp             ----------------------------------------CEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTT
T ss_pred             ----------------------------------------CEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHH
Confidence                                                    7888888888888888888999999999999999988899


Q ss_pred             cccccCCCCEEeCCCCcCcccCc
Q 046398          649 NIGNLISIESLDFSTNQLSSKIS  671 (794)
Q Consensus       649 ~l~~l~~L~~L~Ls~N~l~~~~p  671 (794)
                      .+..+++|+.|+|++|++++..+
T Consensus       121 ~~~~l~~L~~L~L~~N~l~c~c~  143 (192)
T 1w8a_A          121 SFEHLNSLTSLNLASNPFNCNCH  143 (192)
T ss_dssp             SSTTCTTCCEEECTTCCBCCSGG
T ss_pred             HhhcCCCCCEEEeCCCCccCcCc
Confidence            99999999999999999988665

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.67  E-value=1.2e-18  Score=196.98  Aligned_cols=87  Identities=28%  Similarity=0.348  Sum_probs=75.2

Q ss_pred             eeEEEcCCCccccccChhhhcccCCCEEecccccccccCCccccccCCCCEEeCCCCcCcccC-cccccCCCCCCEEeCc
Q 046398          608 VRIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQIPENIGNLISIESLDFSTNQLSSKI-SQSMSSLSFLNHLNVS  686 (794)
Q Consensus       608 L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~-p~~l~~l~~L~~L~ls  686 (794)
                      |+.|+|++|+++ .+|..++.+++|+.|+|++|+|++ +| .++++++|+.|+|++|++++.+ |..+..+++|+.|+++
T Consensus       465 L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~  541 (567)
T 1dce_A          465 VTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQ  541 (567)
T ss_dssp             CCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECT
T ss_pred             CcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEec
Confidence            378889999888 788888999999999999999985 67 7888999999999999998877 8888999999999999


Q ss_pred             CCcccccCCCC
Q 046398          687 NNLLTGKIPSS  697 (794)
Q Consensus       687 ~N~l~g~iP~~  697 (794)
                      +|++++.+|..
T Consensus       542 ~N~l~~~~~~~  552 (567)
T 1dce_A          542 GNSLCQEEGIQ  552 (567)
T ss_dssp             TSGGGGSSSCT
T ss_pred             CCcCCCCccHH
Confidence            99998887754

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.67  E-value=9.7e-19  Score=197.70  Aligned_cols=122  Identities=21%  Similarity=0.255  Sum_probs=88.9

Q ss_pred             CCCEEEccCCcccccCChhhhhcCCCCcEEEcccccccccCCccccCCCCCCEEEccCCcCcccCCchhhcccccccccc
Q 046398          488 NLEVLNLGDNEFVGKIPTWMGEGFTSLLILILRSNKFDGFLPIQLCRLTSLQILDVANNSLSGTMPGCVNNFSAMATIDS  567 (794)
Q Consensus       488 ~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~  567 (794)
                      .|+.|++++|+++ .+|. +. .+++|+.|+|++|+++ .+|..++.+++|+.|+|++|++++ +| .++++++|     
T Consensus       442 ~L~~L~Ls~n~l~-~lp~-~~-~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L-----  510 (567)
T 1dce_A          442 DVRVLHLAHKDLT-VLCH-LE-QLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRL-----  510 (567)
T ss_dssp             TCSEEECTTSCCS-SCCC-GG-GGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSC-----
T ss_pred             CceEEEecCCCCC-CCcC-cc-ccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCC-----
Confidence            4777777777777 4665 44 6777888888888777 667777888888888888888775 44 44444433     


Q ss_pred             ccCCCCcccccccccccccceeeEEEEeccchhhcccccceeEEEcCCCcccccc-ChhhhcccCCCEEecccccccccC
Q 046398          568 SHQSNAMSYFEVTAYDCEVLEDASIVMKGSMVEYNSILNLVRIIDVSKNNFSGEI-PMELTYLRGLQSLNLSHNIFTGQI  646 (794)
Q Consensus       568 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~i-p~~l~~l~~L~~L~Ls~N~l~~~i  646 (794)
                                                               +.|+|++|++++.+ |..++.+++|+.|+|++|.+++.+
T Consensus       511 -----------------------------------------~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~  549 (567)
T 1dce_A          511 -----------------------------------------QELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEE  549 (567)
T ss_dssp             -----------------------------------------CEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSS
T ss_pred             -----------------------------------------cEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCc
Confidence                                                     77888888888776 888888888888888888888654


Q ss_pred             Ccc---ccccCCCCEEeC
Q 046398          647 PEN---IGNLISIESLDF  661 (794)
Q Consensus       647 p~~---l~~l~~L~~L~L  661 (794)
                      |..   +..+++|+.||+
T Consensus       550 ~~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          550 GIQERLAEMLPSVSSILT  567 (567)
T ss_dssp             SCTTHHHHHCTTCSEEEC
T ss_pred             cHHHHHHHHCcccCccCC
Confidence            432   334788888865

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.65  E-value=1.9e-16  Score=161.49  Aligned_cols=169  Identities=18%  Similarity=0.244  Sum_probs=124.8

Q ss_pred             ccceEecccccCCCCCCcccCCCCCCCEEeccCCCCCCCcchhHHhccccceeccCcccCCCCCCCEEEccCCcccccCC
Q 046398          425 QLKTLLLMSCHLGPQFPSWLHSQKNLSVLDISNARISDTIPRWFWNSIFQLSGIIPESFKNFSNLEVLNLGDNEFVGKIP  504 (794)
Q Consensus       425 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip  504 (794)
                      .+..++++++.+.+..  .+..+++|+.|++++|+++.                ++ .+..+++|++|++++|+++ .++
T Consensus        20 ~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~----------------l~-~l~~l~~L~~L~L~~N~i~-~~~   79 (263)
T 1xeu_A           20 NAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQS----------------LA-GMQFFTNLKELHLSHNQIS-DLS   79 (263)
T ss_dssp             HHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCC----------------CT-TGGGCTTCCEEECCSSCCC-CCG
T ss_pred             HHHHHHhcCCCccccc--chhhcCcCcEEECcCCCccc----------------ch-HHhhCCCCCEEECCCCccC-CCh
Confidence            4455555555555433  35667888888888888775                33 5677888888888888887 455


Q ss_pred             hhhhhcCCCCcEEEcccccccccCCccccCCCCCCEEEccCCcCcccCCchhhccccccccccccCCCCccccccccccc
Q 046398          505 TWMGEGFTSLLILILRSNKFDGFLPIQLCRLTSLQILDVANNSLSGTMPGCVNNFSAMATIDSSHQSNAMSYFEVTAYDC  584 (794)
Q Consensus       505 ~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~  584 (794)
                      . +. .+++|+.|++++|++++. |. +.. ++|++|++++|++++. + .+..                          
T Consensus        80 ~-l~-~l~~L~~L~L~~N~l~~l-~~-~~~-~~L~~L~L~~N~l~~~-~-~l~~--------------------------  126 (263)
T 1xeu_A           80 P-LK-DLTKLEELSVNRNRLKNL-NG-IPS-ACLSRLFLDNNELRDT-D-SLIH--------------------------  126 (263)
T ss_dssp             G-GT-TCSSCCEEECCSSCCSCC-TT-CCC-SSCCEEECCSSCCSBS-G-GGTT--------------------------
T ss_pred             h-hc-cCCCCCEEECCCCccCCc-Cc-ccc-CcccEEEccCCccCCC-h-hhcC--------------------------
Confidence            4 33 688888888888888864 32 233 8899999999988753 2 2333                          


Q ss_pred             ccceeeEEEEeccchhhcccccceeEEEcCCCccccccChhhhcccCCCEEecccccccccCCccccccCCCCEEeCCCC
Q 046398          585 EVLEDASIVMKGSMVEYNSILNLVRIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQIPENIGNLISIESLDFSTN  664 (794)
Q Consensus       585 ~~l~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N  664 (794)
                                          ++.|+.|++++|++++. + .+..+++|+.|+|++|++++.  ..+..+++|+.|++++|
T Consensus       127 --------------------l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N  182 (263)
T 1xeu_A          127 --------------------LKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQ  182 (263)
T ss_dssp             --------------------CTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEE
T ss_pred             --------------------cccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCC
Confidence                                33448889999998864 4 688899999999999999865  67889999999999999


Q ss_pred             cCcccC
Q 046398          665 QLSSKI  670 (794)
Q Consensus       665 ~l~~~~  670 (794)
                      ++++..
T Consensus       183 ~~~~~~  188 (263)
T 1xeu_A          183 KCVNEP  188 (263)
T ss_dssp             EEECCC
T ss_pred             cccCCc
Confidence            988753

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.62  E-value=1.1e-15  Score=144.48  Aligned_cols=83  Identities=23%  Similarity=0.234  Sum_probs=48.9

Q ss_pred             eEEEcCCCccccccChhhhcccCCCEEecccccccccC-CccccccCCCCEEeCCCCcCcccCc---ccccCCCCCCEEe
Q 046398          609 RIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQI-PENIGNLISIESLDFSTNQLSSKIS---QSMSSLSFLNHLN  684 (794)
Q Consensus       609 ~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~i-p~~l~~l~~L~~L~Ls~N~l~~~~p---~~l~~l~~L~~L~  684 (794)
                      +.|++++|++++.+|..+..+++|++|+|++|++++.. +..+..+++|+.|++++|++++..+   ..+..+++|++|+
T Consensus        74 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~  153 (168)
T 2ell_A           74 KKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLD  153 (168)
T ss_dssp             CEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEET
T ss_pred             CEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEec
Confidence            44555555555445555555666666666666666321 1556666666666666666665444   3566666666666


Q ss_pred             CcCCccc
Q 046398          685 VSNNLLT  691 (794)
Q Consensus       685 ls~N~l~  691 (794)
                      +++|.+.
T Consensus       154 l~~n~~~  160 (168)
T 2ell_A          154 GYDREDQ  160 (168)
T ss_dssp             TEETTSC
T ss_pred             CCCCChh
Confidence            6666654

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.62  E-value=3.6e-16  Score=165.47  Aligned_cols=223  Identities=13%  Similarity=0.101  Sum_probs=117.2

Q ss_pred             CCCCCEEECcCCCCCCCCCccccCCCCCCeEeeeccCCCCCCCccccCCCCCCcEEEccCCC---CCCCCCchhhhccCC
Q 046398          199 LTSLRHLDLSANKFNSTTAGWLSKFNHLEFLSLSSNGLQGTISSIGLENLTSIKTIDLSLNF---ELGGPIPTSFVRLCE  275 (794)
Q Consensus       199 l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~~~---~~~~~~~~~l~~l~~  275 (794)
                      +++|+.|++.+ .++.....+|.++++|+++++.+|.+. .++...|..+.++..+......   .........|.++..
T Consensus       100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~-~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~  177 (329)
T 3sb4_A          100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAP-NLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEP  177 (329)
T ss_dssp             CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCC-EECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCC
T ss_pred             cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCcc-ccchhhhcCCCceEEecCcchhhhhccccccccccccccc
Confidence            56666666655 555555555666666666666666555 4444455555555555443100   011111222344444


Q ss_pred             CC-EEEccCCCCCcchHHHHHhhhhcCcCCccEEEeecccccccccccccCCCCCCEEEccCCcCcCCCCCCcCCCCCCC
Q 046398          276 LT-SIDVSDVKLSQDLSQVLDILSACGASALESLVFSSSQISGHLTSQLGQFKSLRTLSLDDNCISGPLPPALGDLSSLT  354 (794)
Q Consensus       276 L~-~L~l~~~~l~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~  354 (794)
                      |+ .+++...   +.++..+.... ....+++.+.+.++-...........+++|+.+++++|+++...+.+|.++++|+
T Consensus       178 L~~~i~~~~~---~~l~~~~~~~~-~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~  253 (329)
T 3sb4_A          178 LETTIQVGAM---GKLEDEIMKAG-LQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLL  253 (329)
T ss_dssp             CEEEEEECTT---CCHHHHHHHTT-CCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCC
T ss_pred             cceeEEecCC---CcHHHHHhhcc-cCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCC
Confidence            44 3333321   12222222110 1122455555554422111111112256677777776666655555666677777


Q ss_pred             EEEccCCcccccCCccccCCCCCC-eEeccCcccccccChhhhcCCCCCCEEECcCCcceeEcCCCCcCccccceEe
Q 046398          355 RLDLSRNMLNGSIPLSLGKISHLE-YLDLSNNKMNGTLSEIHFVNLTKLTWFSASGNSLILQVNPNWVPPFQLKTLL  430 (794)
Q Consensus       355 ~L~Ls~n~l~~~~p~~l~~l~~L~-~L~Ls~N~l~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~  430 (794)
                      ++++.+| ++...+.+|.++++|+ .+++.+ .++ .++...|.++++|+.++++.|.+.......|..+++|+.++
T Consensus       254 ~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~-~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly  327 (329)
T 3sb4_A          254 KIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVT-AIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIY  327 (329)
T ss_dssp             EEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCC-EECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred             EEECCcc-cceehHHHhhCChhccEEEEEcc-cce-EEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence            7777666 5544555666677776 777766 454 55555677777777777767776666666666666776665

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.61  E-value=9.2e-16  Score=141.87  Aligned_cols=128  Identities=22%  Similarity=0.260  Sum_probs=81.4

Q ss_pred             CCCcEEEccccccc-ccCCccccCCCCCCEEEccCCcCcccCCchhhccccccccccccCCCCcccccccccccccceee
Q 046398          512 TSLLILILRSNKFD-GFLPIQLCRLTSLQILDVANNSLSGTMPGCVNNFSAMATIDSSHQSNAMSYFEVTAYDCEVLEDA  590 (794)
Q Consensus       512 ~~L~~L~L~~n~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~  590 (794)
                      ++|+.|++++|.++ +.+|..+..+++|++|++++|++++.  ..+.+                                
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~--------------------------------   62 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPK--------------------------------   62 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCC--------------------------------
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhc--------------------------------
Confidence            45556666666655 45555556666666666666666543  22222                                


Q ss_pred             EEEEeccchhhcccccceeEEEcCCCccccccChhhhcccCCCEEeccccccccc-CCccccccCCCCEEeCCCCcCccc
Q 046398          591 SIVMKGSMVEYNSILNLVRIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQ-IPENIGNLISIESLDFSTNQLSSK  669 (794)
Q Consensus       591 ~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~-ip~~l~~l~~L~~L~Ls~N~l~~~  669 (794)
                                    ++.|+.|++++|++++.+|..+..+++|++|++++|++++. .|..++.+++|+.|++++|++++.
T Consensus        63 --------------l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~  128 (149)
T 2je0_A           63 --------------LNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNL  128 (149)
T ss_dssp             --------------CTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGS
T ss_pred             --------------CCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccch
Confidence                          22336666777777665666666677777777777777752 336677777777777777777766


Q ss_pred             Cc---ccccCCCCCCEEeCcC
Q 046398          670 IS---QSMSSLSFLNHLNVSN  687 (794)
Q Consensus       670 ~p---~~l~~l~~L~~L~ls~  687 (794)
                      .+   ..+..+++|++||+++
T Consensus       129 ~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A          129 NDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             TTHHHHHHHHCTTCCEETTBC
T ss_pred             HHHHHHHHHHCCCcccccCCC
Confidence            55   4677777777777753

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.60  E-value=5.7e-15  Score=142.72  Aligned_cols=86  Identities=27%  Similarity=0.297  Sum_probs=67.2

Q ss_pred             eEEEcCCCccccccChhhhcccCCCEEecccccccccCCccccccCCCCEEeCCCCcCcccCcccccCCCCCCEEeCcCC
Q 046398          609 RIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQIPENIGNLISIESLDFSTNQLSSKISQSMSSLSFLNHLNVSNN  688 (794)
Q Consensus       609 ~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N  688 (794)
                      +.|++++|++++..+..|..+++|++|+|++|++++..|..|..+++|+.|+|++|++++..+..+..+++|+.|++++|
T Consensus        57 ~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N  136 (193)
T 2wfh_A           57 TLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGAN  136 (193)
T ss_dssp             CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCC
Confidence            56666666666666666777888888888888888777777888888888888888888776667888888888888888


Q ss_pred             cccccC
Q 046398          689 LLTGKI  694 (794)
Q Consensus       689 ~l~g~i  694 (794)
                      ++.+..
T Consensus       137 ~~~C~c  142 (193)
T 2wfh_A          137 PLYCDC  142 (193)
T ss_dssp             CEECSG
T ss_pred             CeecCC
Confidence            887643

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.60  E-value=3.4e-15  Score=141.17  Aligned_cols=135  Identities=20%  Similarity=0.172  Sum_probs=110.9

Q ss_pred             CCCCCCEEEccCCccc-ccCChhhhhcCCCCcEEEcccccccccCCccccCCCCCCEEEccCCcCcccCCchhhcccccc
Q 046398          485 NFSNLEVLNLGDNEFV-GKIPTWMGEGFTSLLILILRSNKFDGFLPIQLCRLTSLQILDVANNSLSGTMPGCVNNFSAMA  563 (794)
Q Consensus       485 ~l~~L~~L~Ls~n~l~-~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~  563 (794)
                      ..++|+.|++++|+++ +.+|..+. .+++|+.|++++|.+++.  ..+..+++|++|++++|++++.+|..+.++++| 
T Consensus        22 ~~~~L~~L~l~~n~l~~~~i~~~~~-~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L-   97 (168)
T 2ell_A           22 TPAAVRELVLDNCKSNDGKIEGLTA-EFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNL-   97 (168)
T ss_dssp             CTTSCSEEECCSCBCBTTBCSSCCG-GGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTC-
T ss_pred             CcccCCEEECCCCCCChhhHHHHHH-hCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCC-
Confidence            3478889999999887 67877654 688999999999998866  678889999999999999987777766555544 


Q ss_pred             ccccccCCCCcccccccccccccceeeEEEEeccchhhcccccceeEEEcCCCcccccc-ChhhhcccCCCEEecccccc
Q 046398          564 TIDSSHQSNAMSYFEVTAYDCEVLEDASIVMKGSMVEYNSILNLVRIIDVSKNNFSGEI-PMELTYLRGLQSLNLSHNIF  642 (794)
Q Consensus       564 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~i-p~~l~~l~~L~~L~Ls~N~l  642 (794)
                                                                   +.|++++|++++.. +..+..+++|++|++++|.+
T Consensus        98 ---------------------------------------------~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l  132 (168)
T 2ell_A           98 ---------------------------------------------THLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEV  132 (168)
T ss_dssp             ---------------------------------------------CEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGG
T ss_pred             ---------------------------------------------CEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcC
Confidence                                                         88899999998642 27888999999999999999


Q ss_pred             cccCC---ccccccCCCCEEeCCCCcCcc
Q 046398          643 TGQIP---ENIGNLISIESLDFSTNQLSS  668 (794)
Q Consensus       643 ~~~ip---~~l~~l~~L~~L~Ls~N~l~~  668 (794)
                      ++..+   ..+..+++|+.|++++|.+..
T Consensus       133 ~~~~~~~~~~~~~l~~L~~L~l~~n~~~~  161 (168)
T 2ell_A          133 TNLNDYRESVFKLLPQLTYLDGYDREDQE  161 (168)
T ss_dssp             GTSTTHHHHHHTTCSSCCEETTEETTSCB
T ss_pred             cchHHHHHHHHHhCccCcEecCCCCChhh
Confidence            95544   478999999999999999874

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.59  E-value=6.1e-15  Score=140.68  Aligned_cols=88  Identities=20%  Similarity=0.190  Sum_probs=67.1

Q ss_pred             eEEEcCCCccccccChhhhcccCCCEEecccccccccCCccccccCCCCEEeCCCCcCcccCcccccCCCCCCEEeCcCC
Q 046398          609 RIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQIPENIGNLISIESLDFSTNQLSSKISQSMSSLSFLNHLNVSNN  688 (794)
Q Consensus       609 ~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N  688 (794)
                      ++|++++|++++..+..+..+++|++|+|++|++++..+..+..+++|+.|++++|++++..+..+..+++|++|++++|
T Consensus        55 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N  134 (177)
T 2o6r_A           55 TKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN  134 (177)
T ss_dssp             SEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred             cEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCC
Confidence            55555555555444555677788888888888888666666788888888888888888766666788888888999999


Q ss_pred             cccccCCC
Q 046398          689 LLTGKIPS  696 (794)
Q Consensus       689 ~l~g~iP~  696 (794)
                      ++++.+|.
T Consensus       135 ~~~~~~~~  142 (177)
T 2o6r_A          135 PWDCSCPR  142 (177)
T ss_dssp             CBCCCHHH
T ss_pred             CeeccCcc
Confidence            88887764

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.58  E-value=3.6e-15  Score=137.85  Aligned_cols=129  Identities=21%  Similarity=0.210  Sum_probs=105.4

Q ss_pred             CCCCCEEEccCCccc-ccCChhhhhcCCCCcEEEcccccccccCCccccCCCCCCEEEccCCcCcccCCchhhccccccc
Q 046398          486 FSNLEVLNLGDNEFV-GKIPTWMGEGFTSLLILILRSNKFDGFLPIQLCRLTSLQILDVANNSLSGTMPGCVNNFSAMAT  564 (794)
Q Consensus       486 l~~L~~L~Ls~n~l~-~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~  564 (794)
                      .++|+.|++++|+++ +.+|..+. .+++|+.|++++|++++.  ..+..+++|++|++++|++++.+|..+..+++|  
T Consensus        16 ~~~l~~L~l~~n~l~~~~~~~~~~-~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L--   90 (149)
T 2je0_A           16 PSDVKELVLDNSRSNEGKLEGLTD-EFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNL--   90 (149)
T ss_dssp             GGGCSEEECTTCBCBTTBCCSCCT-TCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTC--
T ss_pred             CccCeEEEccCCcCChhHHHHHHh-hcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCC--
Confidence            367888888888887 67777554 688899999999988866  678889999999999999987777666555444  


Q ss_pred             cccccCCCCcccccccccccccceeeEEEEeccchhhcccccceeEEEcCCCccccc-cChhhhcccCCCEEeccccccc
Q 046398          565 IDSSHQSNAMSYFEVTAYDCEVLEDASIVMKGSMVEYNSILNLVRIIDVSKNNFSGE-IPMELTYLRGLQSLNLSHNIFT  643 (794)
Q Consensus       565 l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~-ip~~l~~l~~L~~L~Ls~N~l~  643 (794)
                                                                  +.|++++|++++. .+..++.+++|++|++++|.++
T Consensus        91 --------------------------------------------~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~  126 (149)
T 2je0_A           91 --------------------------------------------THLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVT  126 (149)
T ss_dssp             --------------------------------------------CEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGG
T ss_pred             --------------------------------------------CEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCccc
Confidence                                                        8889999999863 4578899999999999999999


Q ss_pred             ccCC---ccccccCCCCEEeCCC
Q 046398          644 GQIP---ENIGNLISIESLDFST  663 (794)
Q Consensus       644 ~~ip---~~l~~l~~L~~L~Ls~  663 (794)
                      +..+   ..++.+++|+.||+++
T Consensus       127 ~~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A          127 NLNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             GSTTHHHHHHHHCTTCCEETTBC
T ss_pred             chHHHHHHHHHHCCCcccccCCC
Confidence            6655   5789999999999874

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.57  E-value=9.4e-15  Score=154.49  Aligned_cols=286  Identities=11%  Similarity=0.041  Sum_probs=154.7

Q ss_pred             CccEEEeecccccccccccccC-CCCCCEEEccCCcCc--CCCCCCcCCCCCCCEEEccCCcccccCCccccC-------
Q 046398          304 ALESLVFSSSQISGHLTSQLGQ-FKSLRTLSLDDNCIS--GPLPPALGDLSSLTRLDLSRNMLNGSIPLSLGK-------  373 (794)
Q Consensus       304 ~L~~L~L~~n~l~~~~~~~l~~-l~~L~~L~L~~n~l~--~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~-------  373 (794)
                      ++++|.++++ +.......+.. +++|+.|||++|++.  ...+.   .++.++.+.+..|.+.   +..|.+       
T Consensus        26 ~l~~L~l~g~-i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~---~~~~~~~~~~~~~~I~---~~aF~~~~~~~~~   98 (329)
T 3sb4_A           26 SITHLTLTGK-LNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAG---TYPNGKFYIYMANFVP---AYAFSNVVNGVTK   98 (329)
T ss_dssp             HCSEEEEEEE-ECHHHHHHHHHSCTTCCEEEEEEEEECCEEESSS---SSGGGCCEEECTTEEC---TTTTEEEETTEEE
T ss_pred             ceeEEEEecc-ccHHHHHHHHHhhccCeEEecCcceeEEecCccc---cccccccccccccccC---HHHhccccccccc
Confidence            5566666553 11111122333 788999999999887  22222   2223455555555432   334555       


Q ss_pred             -CCCCCeEeccCcccccccChhhhcCCCCCCEEECcCCcceeEcCCCCcCccccceEecccccCCCCCCcccCCCCCCCE
Q 046398          374 -ISHLEYLDLSNNKMNGTLSEIHFVNLTKLTWFSASGNSLILQVNPNWVPPFQLKTLLLMSCHLGPQFPSWLHSQKNLSV  452 (794)
Q Consensus       374 -l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~  452 (794)
                       +++|+.|++.+ .++ .++...|.++++|+.++++.|.+....+..|..+.++..+........               
T Consensus        99 g~~~L~~l~L~~-~i~-~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~---------------  161 (329)
T 3sb4_A           99 GKQTLEKVILSE-KIK-NIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAY---------------  161 (329)
T ss_dssp             ECTTCCC-CBCT-TCC-EECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHH---------------
T ss_pred             ccCCCcEEECCc-ccc-chhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhh---------------
Confidence             88888888888 676 677778888888888888888776655555554444444433221100               


Q ss_pred             EeccCCCCCCCcchhHHhccccceeccCcccCCCCCCC-EEEccCCcccccCChhhhh---cCCCCcEEEcccccccccC
Q 046398          453 LDISNARISDTIPRWFWNSIFQLSGIIPESFKNFSNLE-VLNLGDNEFVGKIPTWMGE---GFTSLLILILRSNKFDGFL  528 (794)
Q Consensus       453 L~Ls~n~l~~~~p~~~~~~~~~l~~~~p~~l~~l~~L~-~L~Ls~n~l~~~ip~~~~~---~l~~L~~L~L~~n~l~~~~  528 (794)
                           ....               ..-...|.++..|+ .+++....   .++..++.   ...+++.+.+.++-.....
T Consensus       162 -----~~~~---------------~i~~~~f~~~~~L~~~i~~~~~~---~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~  218 (329)
T 3sb4_A          162 -----RFKN---------------RWEHFAFIEGEPLETTIQVGAMG---KLEDEIMKAGLQPRDINFLTIEGKLDNADF  218 (329)
T ss_dssp             -----HTST---------------TTTTSCEEESCCCEEEEEECTTC---CHHHHHHHTTCCGGGCSEEEEEECCCHHHH
T ss_pred             -----hccc---------------cccccccccccccceeEEecCCC---cHHHHHhhcccCccccceEEEeeeecHHHH
Confidence                 0000               00112233444444 33333321   22222221   1234444444443211110


Q ss_pred             CccccCCCCCCEEEccCCcCcccCCchhhccccccccccccCCCCcccccccccccccceeeEEEEeccchhhcccccce
Q 046398          529 PIQLCRLTSLQILDVANNSLSGTMPGCVNNFSAMATIDSSHQSNAMSYFEVTAYDCEVLEDASIVMKGSMVEYNSILNLV  608 (794)
Q Consensus       529 p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L  608 (794)
                      ......+++|+.+++++|+++...+.+|.++++|                                              
T Consensus       219 ~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L----------------------------------------------  252 (329)
T 3sb4_A          219 KLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYL----------------------------------------------  252 (329)
T ss_dssp             HHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTC----------------------------------------------
T ss_pred             HHHHHhcCCCeEEECCCCCcceecHhhhhCCCCC----------------------------------------------
Confidence            0001125566666666666664444555554444                                              


Q ss_pred             eEEEcCCCccccccChhhhcccCCC-EEecccccccccCCccccccCCCCEEeCCCCcCcccCcccccCCCCCCEEe
Q 046398          609 RIIDVSKNNFSGEIPMELTYLRGLQ-SLNLSHNIFTGQIPENIGNLISIESLDFSTNQLSSKISQSMSSLSFLNHLN  684 (794)
Q Consensus       609 ~~LdLs~N~l~~~ip~~l~~l~~L~-~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~  684 (794)
                      +.+++++| ++..-+..|.++++|+ .+++.+ .++..-+.+|.++++|+.+++++|+++...+..|.++++|+.+.
T Consensus       253 ~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly  327 (329)
T 3sb4_A          253 LKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIY  327 (329)
T ss_dssp             CEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred             CEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence            55566555 5544555677777777 777776 66645556777777777777777777777777777777777765

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.56  E-value=1.6e-14  Score=139.63  Aligned_cols=129  Identities=20%  Similarity=0.289  Sum_probs=102.4

Q ss_pred             CEEEccCCcccccCChhhhhcCCCCcEEEcccccccccCCccccCCCCCCEEEccCCcCcccCCchhhcccccccccccc
Q 046398          490 EVLNLGDNEFVGKIPTWMGEGFTSLLILILRSNKFDGFLPIQLCRLTSLQILDVANNSLSGTMPGCVNNFSAMATIDSSH  569 (794)
Q Consensus       490 ~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~  569 (794)
                      +.+++++|+++ .+|..+   .++|+.|++++|+++ .+|..|..+++|++|++++|++++..+..|.++++|       
T Consensus        13 ~~l~~~~~~l~-~ip~~~---~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L-------   80 (193)
T 2wfh_A           13 TVVRCSNKGLK-VLPKGI---PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQL-------   80 (193)
T ss_dssp             TEEECTTSCCS-SCCSCC---CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTC-------
T ss_pred             CEEEcCCCCCC-cCCCCC---CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCC-------
Confidence            56777777776 677654   357888888888887 566778888888888888888887666666655544       


Q ss_pred             CCCCcccccccccccccceeeEEEEeccchhhcccccceeEEEcCCCccccccChhhhcccCCCEEecccccccccCCcc
Q 046398          570 QSNAMSYFEVTAYDCEVLEDASIVMKGSMVEYNSILNLVRIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQIPEN  649 (794)
Q Consensus       570 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~  649 (794)
                                                             +.|+|++|++++..|..|..+++|+.|+|++|++++..+..
T Consensus        81 ---------------------------------------~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~  121 (193)
T 2wfh_A           81 ---------------------------------------LTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGA  121 (193)
T ss_dssp             ---------------------------------------CEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTT
T ss_pred             ---------------------------------------CEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhh
Confidence                                                   77888888888777788899999999999999999666667


Q ss_pred             ccccCCCCEEeCCCCcCccc
Q 046398          650 IGNLISIESLDFSTNQLSSK  669 (794)
Q Consensus       650 l~~l~~L~~L~Ls~N~l~~~  669 (794)
                      |..+++|+.|+|++|++...
T Consensus       122 ~~~l~~L~~L~L~~N~~~C~  141 (193)
T 2wfh_A          122 FNDLSALSHLAIGANPLYCD  141 (193)
T ss_dssp             TTTCTTCCEEECCSSCEECS
T ss_pred             hhcCccccEEEeCCCCeecC
Confidence            88999999999999998753

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.56  E-value=2e-14  Score=137.06  Aligned_cols=133  Identities=19%  Similarity=0.211  Sum_probs=105.2

Q ss_pred             CCEEEccCCcccccCChhhhhcCCCCcEEEcccccccccCCccccCCCCCCEEEccCCcCcccCCchhhccccccccccc
Q 046398          489 LEVLNLGDNEFVGKIPTWMGEGFTSLLILILRSNKFDGFLPIQLCRLTSLQILDVANNSLSGTMPGCVNNFSAMATIDSS  568 (794)
Q Consensus       489 L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~  568 (794)
                      .+.+++++|+++ .+|..+   .++|+.|++++|++++..+..+..+++|++|++++|++++..+..+.++++|      
T Consensus         9 ~~~l~~~~~~l~-~~p~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L------   78 (177)
T 2o6r_A            9 GTEIRCNSKGLT-SVPTGI---PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKL------   78 (177)
T ss_dssp             TTEEECCSSCCS-SCCTTC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTC------
T ss_pred             CCEEEecCCCCc-cCCCCC---CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCcc------
Confidence            467778888776 677543   3678888888888887666677888888888888888886655555554444      


Q ss_pred             cCCCCcccccccccccccceeeEEEEeccchhhcccccceeEEEcCCCccccccChhhhcccCCCEEecccccccccCCc
Q 046398          569 HQSNAMSYFEVTAYDCEVLEDASIVMKGSMVEYNSILNLVRIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQIPE  648 (794)
Q Consensus       569 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~  648 (794)
                                                              +.|++++|++++..+..+..+++|++|+|++|++++..+.
T Consensus        79 ----------------------------------------~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~  118 (177)
T 2o6r_A           79 ----------------------------------------TILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDG  118 (177)
T ss_dssp             ----------------------------------------CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred             ----------------------------------------CEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHH
Confidence                                                    7888999999877777788899999999999999966566


Q ss_pred             cccccCCCCEEeCCCCcCcccCc
Q 046398          649 NIGNLISIESLDFSTNQLSSKIS  671 (794)
Q Consensus       649 ~l~~l~~L~~L~Ls~N~l~~~~p  671 (794)
                      .+..+++|+.|++++|++.+..|
T Consensus       119 ~~~~l~~L~~L~l~~N~~~~~~~  141 (177)
T 2o6r_A          119 IFDRLTSLQKIWLHTNPWDCSCP  141 (177)
T ss_dssp             TTTTCTTCCEEECCSSCBCCCHH
T ss_pred             HhcCCcccCEEEecCCCeeccCc
Confidence            67889999999999999988665

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.52  E-value=3.2e-16  Score=152.60  Aligned_cols=154  Identities=18%  Similarity=0.236  Sum_probs=105.3

Q ss_pred             CCCCCCEEEccCCcccccCCh------hhhhcCCCCcEEEcccccccccCCccccCCCCCCEEEccCCcCcccCCchhhc
Q 046398          485 NFSNLEVLNLGDNEFVGKIPT------WMGEGFTSLLILILRSNKFDGFLPIQLCRLTSLQILDVANNSLSGTMPGCVNN  558 (794)
Q Consensus       485 ~l~~L~~L~Ls~n~l~~~ip~------~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~  558 (794)
                      ....++.++++.+.++|.+|.      .+. .+++|++|++++|++++ +| .+..+++|++|++++|+++ .+|..+..
T Consensus        16 ~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~-~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~   91 (198)
T 1ds9_A           16 ERKSVVATEAEKVELHGMIPPIEKMDATLS-TLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAV   91 (198)
T ss_dssp             HTTCCCCTTCSEEECCBCCTTCCCCHHHHH-HTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHH
T ss_pred             hcccccCcchheeEeccccCcHhhhhHHHh-cCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhc
Confidence            344566666666666666554      554 57788888888887776 45 6777788888888888776 44544433


Q ss_pred             cccccccccccCCCCcccccccccccccceeeEEEEeccchhhcccccceeEEEcCCCccccccChhhhcccCCCEEecc
Q 046398          559 FSAMATIDSSHQSNAMSYFEVTAYDCEVLEDASIVMKGSMVEYNSILNLVRIIDVSKNNFSGEIPMELTYLRGLQSLNLS  638 (794)
Q Consensus       559 l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls  638 (794)
                      ++                                              .|+.|++++|++++ +| .+..+++|++|+++
T Consensus        92 ~~----------------------------------------------~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~  123 (198)
T 1ds9_A           92 AD----------------------------------------------TLEELWISYNQIAS-LS-GIEKLVNLRVLYMS  123 (198)
T ss_dssp             HH----------------------------------------------HCSEEEEEEEECCC-HH-HHHHHHHSSEEEES
T ss_pred             CC----------------------------------------------cCCEEECcCCcCCc-CC-ccccCCCCCEEECC
Confidence            33                                              33777788887775 44 57777888888888


Q ss_pred             cccccccCC-ccccccCCCCEEeCCCCcCcccCccc----------ccCCCCCCEEeCcCCcccc
Q 046398          639 HNIFTGQIP-ENIGNLISIESLDFSTNQLSSKISQS----------MSSLSFLNHLNVSNNLLTG  692 (794)
Q Consensus       639 ~N~l~~~ip-~~l~~l~~L~~L~Ls~N~l~~~~p~~----------l~~l~~L~~L~ls~N~l~g  692 (794)
                      +|++++..+ +.+..+++|+.|++++|++++.+|..          +..+++|+.||  +|+++.
T Consensus       124 ~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~~  186 (198)
T 1ds9_A          124 NNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVDV  186 (198)
T ss_dssp             EEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGTT
T ss_pred             CCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccCH
Confidence            888874322 46777888888888888887766653          67778888776  565553

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.51  E-value=4.7e-14  Score=134.29  Aligned_cols=82  Identities=16%  Similarity=0.145  Sum_probs=46.3

Q ss_pred             eEEEcCCCccccccChhhhcccCCCEEecccccccccCCc--cccccCCCCEEeCCCCcCcccCcc----cccCCCCCCE
Q 046398          609 RIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQIPE--NIGNLISIESLDFSTNQLSSKISQ----SMSSLSFLNH  682 (794)
Q Consensus       609 ~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~--~l~~l~~L~~L~Ls~N~l~~~~p~----~l~~l~~L~~  682 (794)
                      +.|++++|++++..+..+..+++|++|+|++|+++ .+|.  .++.+++|+.|++++|+++. +|.    .+..+++|+.
T Consensus        67 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~~-~~~~~~~~~~~l~~L~~  144 (176)
T 1a9n_A           67 KTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRV  144 (176)
T ss_dssp             CEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSE
T ss_pred             CEEECCCCcccccCcchhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCCC-cHhHHHHHHHHCCccce
Confidence            44444444444332233355666666666666664 4444  56666666666666666653 343    2666667777


Q ss_pred             EeCcCCcccc
Q 046398          683 LNVSNNLLTG  692 (794)
Q Consensus       683 L~ls~N~l~g  692 (794)
                      ||+++|....
T Consensus       145 Ld~~~n~~~~  154 (176)
T 1a9n_A          145 LDFQKVKLKE  154 (176)
T ss_dssp             ETTEECCHHH
T ss_pred             eCCCcCCHHH
Confidence            7777666543

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.49  E-value=5.6e-14  Score=133.80  Aligned_cols=135  Identities=19%  Similarity=0.220  Sum_probs=113.1

Q ss_pred             ccCCCCCCCEEEccCCcccccCChhhhhcCCCCcEEEcccccccccCCccccCCCCCCEEEccCCcCcccCCchhhcccc
Q 046398          482 SFKNFSNLEVLNLGDNEFVGKIPTWMGEGFTSLLILILRSNKFDGFLPIQLCRLTSLQILDVANNSLSGTMPGCVNNFSA  561 (794)
Q Consensus       482 ~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~  561 (794)
                      .+.++++|+.|++++|+++ .+|. +....++|+.|++++|++++.  ..+..+++|++|++++|++++..+..+..+++
T Consensus        14 ~~~~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~   89 (176)
T 1a9n_A           14 QYTNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPD   89 (176)
T ss_dssp             EEECTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTT
T ss_pred             hcCCcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCC
Confidence            4567899999999999998 6665 443455999999999999976  67899999999999999998765555555554


Q ss_pred             ccccccccCCCCcccccccccccccceeeEEEEeccchhhcccccceeEEEcCCCccccccCh--hhhcccCCCEEeccc
Q 046398          562 MATIDSSHQSNAMSYFEVTAYDCEVLEDASIVMKGSMVEYNSILNLVRIIDVSKNNFSGEIPM--ELTYLRGLQSLNLSH  639 (794)
Q Consensus       562 L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~--~l~~l~~L~~L~Ls~  639 (794)
                      |                                              +.|++++|+++ .+|.  .+..+++|+.|++++
T Consensus        90 L----------------------------------------------~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~  122 (176)
T 1a9n_A           90 L----------------------------------------------TELILTNNSLV-ELGDLDPLASLKSLTYLCILR  122 (176)
T ss_dssp             C----------------------------------------------CEEECCSCCCC-CGGGGGGGGGCTTCCEEECCS
T ss_pred             C----------------------------------------------CEEECCCCcCC-cchhhHhhhcCCCCCEEEecC
Confidence            4                                              88999999996 5666  789999999999999


Q ss_pred             ccccccCCcc----ccccCCCCEEeCCCCcCcc
Q 046398          640 NIFTGQIPEN----IGNLISIESLDFSTNQLSS  668 (794)
Q Consensus       640 N~l~~~ip~~----l~~l~~L~~L~Ls~N~l~~  668 (794)
                      |.++ .+|..    +..+++|+.||+++|.+..
T Consensus       123 N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~~  154 (176)
T 1a9n_A          123 NPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLKE  154 (176)
T ss_dssp             SGGG-GSTTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred             CCCC-CcHhHHHHHHHHCCccceeCCCcCCHHH
Confidence            9998 66764    8999999999999998765

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.47  E-value=3.3e-12  Score=137.80  Aligned_cols=265  Identities=11%  Similarity=0.119  Sum_probs=164.4

Q ss_pred             CCCCCEEEccCCcCcCCCCCCcCCCCCCCEEEccCCcccccCCccccCCCCCCeEeccCcccccccChhhhcCCCCCCEE
Q 046398          326 FKSLRTLSLDDNCISGPLPPALGDLSSLTRLDLSRNMLNGSIPLSLGKISHLEYLDLSNNKMNGTLSEIHFVNLTKLTWF  405 (794)
Q Consensus       326 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L  405 (794)
                      +..++.+.+.+ .++.....+|.++ +|+.+.+..+ ++..-..+|.++ +|+.+.+.+ .+. .++...|.++++|+.+
T Consensus       112 ~~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~-~I~~~aF~~c~~L~~l  185 (401)
T 4fdw_A          112 LKGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLE-QLKEDIFYYCYNLKKA  185 (401)
T ss_dssp             CSSCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCC-EECSSTTTTCTTCCEE
T ss_pred             cCCccEEEECC-ccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-Ccc-EehHHHhhCcccCCee
Confidence            46777887765 3554555677764 7888888766 554555566663 688888875 454 5666677778888888


Q ss_pred             ECcCCcceeEcCCCCcCccccceEecccccCCCCCCcccCCCCCCCEEeccCCCCCCCcchhHHhccccceeccCcccCC
Q 046398          406 SASGNSLILQVNPNWVPPFQLKTLLLMSCHLGPQFPSWLHSQKNLSVLDISNARISDTIPRWFWNSIFQLSGIIPESFKN  485 (794)
Q Consensus       406 ~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~l~~~~p~~l~~  485 (794)
                      ++..|.++......|.                         +.+|+.+.+.++ ++.               +-...|.+
T Consensus       186 ~l~~n~l~~I~~~aF~-------------------------~~~L~~l~lp~~-l~~---------------I~~~aF~~  224 (401)
T 4fdw_A          186 DLSKTKITKLPASTFV-------------------------YAGIEEVLLPVT-LKE---------------IGSQAFLK  224 (401)
T ss_dssp             ECTTSCCSEECTTTTT-------------------------TCCCSEEECCTT-CCE---------------ECTTTTTT
T ss_pred             ecCCCcceEechhhEe-------------------------ecccCEEEeCCc-hhe---------------ehhhHhhC
Confidence            7777766544333332                         345555555533 221               22345666


Q ss_pred             CCCCCEEEccCCcccccCChhhhhcCCCCcEEEcccccccccCCccccCCCCCCEEEccCCcCc-----ccCCchhhccc
Q 046398          486 FSNLEVLNLGDNEFVGKIPTWMGEGFTSLLILILRSNKFDGFLPIQLCRLTSLQILDVANNSLS-----GTMPGCVNNFS  560 (794)
Q Consensus       486 l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~-----~~~p~~~~~l~  560 (794)
                      |++|+.+++..| ++ .++...+.+ .+|+.+.+ .+.++...+.+|.++++|+.+++.+|.+.     ...+.+|.+|+
T Consensus       225 ~~~L~~l~l~~~-l~-~I~~~aF~~-~~L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~  300 (401)
T 4fdw_A          225 TSQLKTIEIPEN-VS-TIGQEAFRE-SGITTVKL-PNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCP  300 (401)
T ss_dssp             CTTCCCEECCTT-CC-EECTTTTTT-CCCSEEEE-ETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCT
T ss_pred             CCCCCEEecCCC-cc-Ccccccccc-CCccEEEe-CCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCc
Confidence            777777777664 33 555555543 66777777 34455455667777777777777776654     22233444443


Q ss_pred             cccccccccCCCCcccccccccccccceeeEEEEeccchhhcccccceeEEEcCCCccccccChhhhcccCCCEEecccc
Q 046398          561 AMATIDSSHQSNAMSYFEVTAYDCEVLEDASIVMKGSMVEYNSILNLVRIIDVSKNNFSGEIPMELTYLRGLQSLNLSHN  640 (794)
Q Consensus       561 ~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N  640 (794)
                      +|                                              +.+++. +.++..-...|.++++|+.++|..|
T Consensus       301 ~L----------------------------------------------~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~  333 (401)
T 4fdw_A          301 KL----------------------------------------------ARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN  333 (401)
T ss_dssp             TC----------------------------------------------CEECCC-TTCCEECTTTTTTCCSCCEEEECTT
T ss_pred             cC----------------------------------------------CeEEeC-CceEEEhhhhhcCCCCccEEEECcc
Confidence            33                                              555555 3355444556777777888877554


Q ss_pred             cccccCCccccccCCCCEEeCCCCcCcccCcccccCCC-CCCEEeCcCCcc
Q 046398          641 IFTGQIPENIGNLISIESLDFSTNQLSSKISQSMSSLS-FLNHLNVSNNLL  690 (794)
Q Consensus       641 ~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~-~L~~L~ls~N~l  690 (794)
                       ++..-+.+|.++ +|+.+++++|.+....+..|.+++ .++.|.+..+.+
T Consensus       334 -l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~  382 (401)
T 4fdw_A          334 -VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESV  382 (401)
T ss_dssp             -CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGH
T ss_pred             -ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHH
Confidence             554555677777 788888888777766666676664 566777666543

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.46  E-value=4.5e-12  Score=136.81  Aligned_cols=264  Identities=11%  Similarity=0.093  Sum_probs=161.0

Q ss_pred             CCccEEEeecccccccccccccCCCCCCEEEccCCcCcCCCCCCcCCCCCCCEEEccCCcccccCCccccCCCCCCeEec
Q 046398          303 SALESLVFSSSQISGHLTSQLGQFKSLRTLSLDDNCISGPLPPALGDLSSLTRLDLSRNMLNGSIPLSLGKISHLEYLDL  382 (794)
Q Consensus       303 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L  382 (794)
                      ..++.+.+.. .++......|.++ +|+.+.+.++ ++.....+|.+ .+|+.+.+.. .+...-+.+|.++++|+.+++
T Consensus       113 ~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l  187 (401)
T 4fdw_A          113 KGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKADL  187 (401)
T ss_dssp             SSCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEEEC
T ss_pred             CCccEEEECC-ccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCeeec
Confidence            3677777765 4565666778875 7999999876 66566677887 4799999986 666566678999999999999


Q ss_pred             cCcccccccChhhhcCCCCCCEEECcCCcceeEcCCCCcCccccceEecccccCCCCCCcccCCCCCCCEEeccCCCCCC
Q 046398          383 SNNKMNGTLSEIHFVNLTKLTWFSASGNSLILQVNPNWVPPFQLKTLLLMSCHLGPQFPSWLHSQKNLSVLDISNARISD  462 (794)
Q Consensus       383 s~N~l~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~  462 (794)
                      ++|+++ .++...|. ..+|+.+.+..+ +.......|..+.+|+.+.+.++ +...-..+|.+ .+|+.+.+.+     
T Consensus       188 ~~n~l~-~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp~-----  257 (401)
T 4fdw_A          188 SKTKIT-KLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLPN-----  257 (401)
T ss_dssp             TTSCCS-EECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEET-----
T ss_pred             CCCcce-EechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeCC-----
Confidence            999998 78877887 589999999854 55555555656666666665542 22222333333 3444444422     


Q ss_pred             CcchhHHhccccceeccCcccCCCCCCCEEEccCCcccccCChhhhhcCCCCcEEEccccccc-----ccCCccccCCCC
Q 046398          463 TIPRWFWNSIFQLSGIIPESFKNFSNLEVLNLGDNEFVGKIPTWMGEGFTSLLILILRSNKFD-----GFLPIQLCRLTS  537 (794)
Q Consensus       463 ~~p~~~~~~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~-----~~~p~~~~~l~~  537 (794)
                                                         .++ .++...+.++++|+.+++.+|.+.     ...+.+|..+++
T Consensus       258 -----------------------------------~i~-~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~  301 (401)
T 4fdw_A          258 -----------------------------------GVT-NIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPK  301 (401)
T ss_dssp             -----------------------------------TCC-EECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTT
T ss_pred             -----------------------------------Ccc-EEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCcc
Confidence                                               232 343333434444555554444432     233445556666


Q ss_pred             CCEEEccCCcCcccCCchhhccccccccccccCCCCcccccccccccccceeeEEEEeccchhhcccccceeEEEcCCCc
Q 046398          538 LQILDVANNSLSGTMPGCVNNFSAMATIDSSHQSNAMSYFEVTAYDCEVLEDASIVMKGSMVEYNSILNLVRIIDVSKNN  617 (794)
Q Consensus       538 L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~  617 (794)
                      |+.+++.+ .++..-..+|.++++|                                              +.+++..| 
T Consensus       302 L~~l~l~~-~i~~I~~~aF~~c~~L----------------------------------------------~~l~lp~~-  333 (401)
T 4fdw_A          302 LARFEIPE-SIRILGQGLLGGNRKV----------------------------------------------TQLTIPAN-  333 (401)
T ss_dssp             CCEECCCT-TCCEECTTTTTTCCSC----------------------------------------------CEEEECTT-
T ss_pred             CCeEEeCC-ceEEEhhhhhcCCCCc----------------------------------------------cEEEECcc-
Confidence            66666653 3443334444444444                                              34444322 


Q ss_pred             cccccChhhhcccCCCEEecccccccccCCccccccC-CCCEEeCCCCcC
Q 046398          618 FSGEIPMELTYLRGLQSLNLSHNIFTGQIPENIGNLI-SIESLDFSTNQL  666 (794)
Q Consensus       618 l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~-~L~~L~Ls~N~l  666 (794)
                      ++..-+..|.++ +|+.+++++|.+....+..|..++ .++.|++..+.+
T Consensus       334 l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~  382 (401)
T 4fdw_A          334 VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESV  382 (401)
T ss_dssp             CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGH
T ss_pred             ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHH
Confidence            333344556666 667777776666644455555553 566666665544

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.42  E-value=5.2e-13  Score=126.05  Aligned_cols=90  Identities=21%  Similarity=0.225  Sum_probs=79.1

Q ss_pred             eeEEEcCCCccccccChhhhcccCCCEEecccccccccCCccccccCCCCEEeCCCCcCcccCcccccCCCCCCEEeCcC
Q 046398          608 VRIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQIPENIGNLISIESLDFSTNQLSSKISQSMSSLSFLNHLNVSN  687 (794)
Q Consensus       608 L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~  687 (794)
                      ++.|++++|++++..|..|..+++|++|+|++|+|++..|..|..+++|+.|+|++|++++..+..+..+++|++|++++
T Consensus        32 l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~  111 (170)
T 3g39_A           32 TQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLN  111 (170)
T ss_dssp             CSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCC
Confidence            47888888988888888899999999999999999977677789999999999999999988887899999999999999


Q ss_pred             CcccccCCCC
Q 046398          688 NLLTGKIPSS  697 (794)
Q Consensus       688 N~l~g~iP~~  697 (794)
                      |++++..+..
T Consensus       112 N~~~c~c~~l  121 (170)
T 3g39_A          112 NPWDCACSDI  121 (170)
T ss_dssp             SCBCTTBGGG
T ss_pred             CCCCCCchhH
Confidence            9998876643

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.41  E-value=1.4e-11  Score=133.48  Aligned_cols=56  Identities=7%  Similarity=0.141  Sum_probs=26.5

Q ss_pred             hhhhcccCCCEEecccccccccCCccccccCCCCEEeCCCCcCcccCcccccCCCCCCE
Q 046398          624 MELTYLRGLQSLNLSHNIFTGQIPENIGNLISIESLDFSTNQLSSKISQSMSSLSFLNH  682 (794)
Q Consensus       624 ~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~  682 (794)
                      ..|.++.+|+.+++..| ++..-..+|.++++|+.+++..+ ++ .+...|.+.++|+.
T Consensus       337 ~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~~-~~~~~F~~c~~L~~  392 (394)
T 4fs7_A          337 RSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR-LE-QYRYDFEDTTKFKW  392 (394)
T ss_dssp             TTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-GG-GGGGGBCTTCEEEE
T ss_pred             HhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC-CE-EhhheecCCCCCcE
Confidence            34455555555555544 44233345555555555555433 11 22334555554443

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.41  E-value=5.8e-15  Score=143.61  Aligned_cols=136  Identities=18%  Similarity=0.284  Sum_probs=118.7

Q ss_pred             cCCCCcEEEcccccccccCCc------cccCCCCCCEEEccCCcCcccCCchhhccccccccccccCCCCcccccccccc
Q 046398          510 GFTSLLILILRSNKFDGFLPI------QLCRLTSLQILDVANNSLSGTMPGCVNNFSAMATIDSSHQSNAMSYFEVTAYD  583 (794)
Q Consensus       510 ~l~~L~~L~L~~n~l~~~~p~------~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~  583 (794)
                      ....++.++++.+.+.+.+|.      .+..+++|++|++++|++++ +| .+.++++|                     
T Consensus        16 ~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L---------------------   72 (198)
T 1ds9_A           16 ERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENL---------------------   72 (198)
T ss_dssp             HTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTC---------------------
T ss_pred             hcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCC---------------------
Confidence            467888899999999988876      89999999999999999986 55 55554444                     


Q ss_pred             cccceeeEEEEeccchhhcccccceeEEEcCCCccccccChhhhcccCCCEEecccccccccCCccccccCCCCEEeCCC
Q 046398          584 CEVLEDASIVMKGSMVEYNSILNLVRIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQIPENIGNLISIESLDFST  663 (794)
Q Consensus       584 ~~~l~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~  663 (794)
                                               +.|++++|+++ .+|..+..+++|++|+|++|++++ +| .++.+++|+.|++++
T Consensus        73 -------------------------~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~  124 (198)
T 1ds9_A           73 -------------------------RILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSN  124 (198)
T ss_dssp             -------------------------CEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESE
T ss_pred             -------------------------CEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCC
Confidence                                     89999999998 788888889999999999999995 55 699999999999999


Q ss_pred             CcCcccCc-ccccCCCCCCEEeCcCCcccccCCC
Q 046398          664 NQLSSKIS-QSMSSLSFLNHLNVSNNLLTGKIPS  696 (794)
Q Consensus       664 N~l~~~~p-~~l~~l~~L~~L~ls~N~l~g~iP~  696 (794)
                      |++++..+ ..+..+++|++|++++|++++.+|.
T Consensus       125 N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~  158 (198)
T 1ds9_A          125 NKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKE  158 (198)
T ss_dssp             EECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHT
T ss_pred             CcCCchhHHHHHhcCCCCCEEEecCCcccccccc
Confidence            99997543 5789999999999999999999876

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.37  E-value=1.5e-12  Score=123.28  Aligned_cols=89  Identities=21%  Similarity=0.225  Sum_probs=74.2

Q ss_pred             eeEEEcCCCccccccChhhhcccCCCEEecccccccccCCccccccCCCCEEeCCCCcCcccCcccccCCCCCCEEeCcC
Q 046398          608 VRIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQIPENIGNLISIESLDFSTNQLSSKISQSMSSLSFLNHLNVSN  687 (794)
Q Consensus       608 L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~  687 (794)
                      ++.|++++|++++..|..|..+++|+.|+|++|+|++..+..|.++++|+.|+|++|+|++..+..+..+++|++|++++
T Consensus        35 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~  114 (174)
T 2r9u_A           35 KQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYN  114 (174)
T ss_dssp             CSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCS
T ss_pred             CcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEeCC
Confidence            47788888888877788888889999999999999865555678899999999999999987776788899999999999


Q ss_pred             CcccccCCC
Q 046398          688 NLLTGKIPS  696 (794)
Q Consensus       688 N~l~g~iP~  696 (794)
                      |++.+..+.
T Consensus       115 N~~~c~~~~  123 (174)
T 2r9u_A          115 NPWDCECRD  123 (174)
T ss_dssp             SCBCTTBGG
T ss_pred             CCccccccc
Confidence            998876543

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.35  E-value=2.9e-12  Score=120.87  Aligned_cols=63  Identities=19%  Similarity=0.166  Sum_probs=44.6

Q ss_pred             eEEEcCCCccccccChhhhcccCCCEEecccccccccCCccccccCCCCEEeCCCCcCcccCc
Q 046398          609 RIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQIPENIGNLISIESLDFSTNQLSSKIS  671 (794)
Q Consensus       609 ~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p  671 (794)
                      ++|+|++|++++..+..|..+++|++|+|++|+|++..+..|.++++|+.|+|++|++....+
T Consensus        57 ~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~  119 (170)
T 3g39_A           57 TRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACS  119 (170)
T ss_dssp             SEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred             CEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence            555555555554445556777788888888888886556668888888888888888876543

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.34  E-value=7.5e-11  Score=127.76  Aligned_cols=81  Identities=9%  Similarity=0.048  Sum_probs=62.9

Q ss_pred             ccceeEEEcCCCccccccChhhhcccCCCEEecccccccccCCccccccCCCCEEeCCCCcCcccCcccccCCCCCCEEe
Q 046398          605 LNLVRIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQIPENIGNLISIESLDFSTNQLSSKISQSMSSLSFLNHLN  684 (794)
Q Consensus       605 l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~  684 (794)
                      ...|+.+.+..+ ++..-...|.++.+|+.++|..+ ++..-..+|.++++|+.+++..| ++......|.++++|+.++
T Consensus       296 ~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~  372 (394)
T 4fs7_A          296 CSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVE  372 (394)
T ss_dssp             CTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEE
T ss_pred             cccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEE
Confidence            344566666544 55455667889999999999754 66455678999999999999877 7777778899999999999


Q ss_pred             CcCC
Q 046398          685 VSNN  688 (794)
Q Consensus       685 ls~N  688 (794)
                      +..+
T Consensus       373 lp~~  376 (394)
T 4fs7_A          373 LPKR  376 (394)
T ss_dssp             EEGG
T ss_pred             ECCC
Confidence            8754

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.32  E-value=6.2e-12  Score=118.98  Aligned_cols=61  Identities=16%  Similarity=0.174  Sum_probs=40.2

Q ss_pred             eEEEcCCCccccccChhhhcccCCCEEecccccccccCCccccccCCCCEEeCCCCcCccc
Q 046398          609 RIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQIPENIGNLISIESLDFSTNQLSSK  669 (794)
Q Consensus       609 ~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~  669 (794)
                      +.|+|++|++++..+..+..+++|++|+|++|+|++..+..|..+++|+.|+|++|++...
T Consensus        60 ~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~  120 (174)
T 2r9u_A           60 QQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDCE  120 (174)
T ss_dssp             CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBCTT
T ss_pred             CEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEeCCCCcccc
Confidence            4455555555544344456677777777777777754445577778888888888877754

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.30  E-value=1.5e-13  Score=146.98  Aligned_cols=192  Identities=18%  Similarity=0.110  Sum_probs=118.4

Q ss_pred             CCCCCEEeccCCCCCCCcchhHHhccccceeccCcccC-CCCCCCEEEccCCcccccCChhhhhcCCCCcEEEccccccc
Q 046398          447 QKNLSVLDISNARISDTIPRWFWNSIFQLSGIIPESFK-NFSNLEVLNLGDNEFVGKIPTWMGEGFTSLLILILRSNKFD  525 (794)
Q Consensus       447 l~~L~~L~Ls~n~l~~~~p~~~~~~~~~l~~~~p~~l~-~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~  525 (794)
                      ++.|+.|++++|.++......+           ...+. ..++|++|+|++|.+++.....+...+++|+.|+|++|.++
T Consensus        71 ~~~L~~L~Ls~n~l~~~~~~~l-----------~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~  139 (372)
T 3un9_A           71 LSSLRQLNLAGVRMTPVKCTVV-----------AAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLG  139 (372)
T ss_dssp             HTTCCEEECTTSCCCHHHHHHH-----------HHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCC
T ss_pred             HhhCCEEEecCCCCCHHHHHHH-----------HHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCC
Confidence            3568888888888775322221           12222 34689999999998875544455555678889999999887


Q ss_pred             ccCCccc-----cCCCCCCEEEccCCcCcccCCchhhccccccccccccCCCCcccccccccccccceeeEEEEeccchh
Q 046398          526 GFLPIQL-----CRLTSLQILDVANNSLSGTMPGCVNNFSAMATIDSSHQSNAMSYFEVTAYDCEVLEDASIVMKGSMVE  600 (794)
Q Consensus       526 ~~~p~~~-----~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  600 (794)
                      ......+     ...++|++|+|++|.++..-...+.                                          .
T Consensus       140 ~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~------------------------------------------~  177 (372)
T 3un9_A          140 PEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLM------------------------------------------E  177 (372)
T ss_dssp             HHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHH------------------------------------------H
T ss_pred             HHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHH------------------------------------------H
Confidence            5443333     2467888888888887632111110                                          0


Q ss_pred             hcccccceeEEEcCCCccccc----cChhhhcccCCCEEeccccccccc----CCccccccCCCCEEeCCCCcCcccCcc
Q 046398          601 YNSILNLVRIIDVSKNNFSGE----IPMELTYLRGLQSLNLSHNIFTGQ----IPENIGNLISIESLDFSTNQLSSKISQ  672 (794)
Q Consensus       601 ~~~~l~~L~~LdLs~N~l~~~----ip~~l~~l~~L~~L~Ls~N~l~~~----ip~~l~~l~~L~~L~Ls~N~l~~~~p~  672 (794)
                      .....+.|++|||++|.+++.    ++..+...++|++|+|++|.|++.    ++..+...++|++|||++|.|+.....
T Consensus       178 ~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~  257 (372)
T 3un9_A          178 GLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQ  257 (372)
T ss_dssp             HHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHH
T ss_pred             HHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHH
Confidence            111234457888888887653    345566677888888888888753    334455667888888888888765555


Q ss_pred             cccCCCC-----CCEEe--CcCCccc
Q 046398          673 SMSSLSF-----LNHLN--VSNNLLT  691 (794)
Q Consensus       673 ~l~~l~~-----L~~L~--ls~N~l~  691 (794)
                      .+..+..     |+.+.  +..|.++
T Consensus       258 ~L~~~~~~~~~~L~~l~~ll~~~~~~  283 (372)
T 3un9_A          258 VLRDLGGAAEGGARVVVSLTEGTAVS  283 (372)
T ss_dssp             HHHHCC------CEEECCCC----CH
T ss_pred             HHHHHhcCCCccchhhHhhhcCCccC
Confidence            5443321     55555  5555554

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.24  E-value=7.4e-13  Score=141.51  Aligned_cols=167  Identities=17%  Similarity=0.129  Sum_probs=122.2

Q ss_pred             CCCCCEEEccCCcccccCChhhhh----cCCCCcEEEcccccccccCCccc-cCCCCCCEEEccCCcCcccCCchhhccc
Q 046398          486 FSNLEVLNLGDNEFVGKIPTWMGE----GFTSLLILILRSNKFDGFLPIQL-CRLTSLQILDVANNSLSGTMPGCVNNFS  560 (794)
Q Consensus       486 l~~L~~L~Ls~n~l~~~ip~~~~~----~l~~L~~L~L~~n~l~~~~p~~~-~~l~~L~~L~Ls~N~l~~~~p~~~~~l~  560 (794)
                      .+.|+.|++++|.+++.....+..    ..++|+.|+|++|.++......+ ..+++|++|+|++|.++......+... 
T Consensus        71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~-  149 (372)
T 3un9_A           71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDL-  149 (372)
T ss_dssp             HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHH-
T ss_pred             HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHH-
Confidence            367999999999987543333322    23689999999999875433333 245689999999999874433222110 


Q ss_pred             cccccccccCCCCcccccccccccccceeeEEEEeccchhhcccccceeEEEcCCCcccc----ccChhhhcccCCCEEe
Q 046398          561 AMATIDSSHQSNAMSYFEVTAYDCEVLEDASIVMKGSMVEYNSILNLVRIIDVSKNNFSG----EIPMELTYLRGLQSLN  636 (794)
Q Consensus       561 ~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~----~ip~~l~~l~~L~~L~  636 (794)
                       +                                       ....+.|+.|+|++|.++.    .++..+...++|++|+
T Consensus       150 -L---------------------------------------~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~  189 (372)
T 3un9_A          150 -L---------------------------------------LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLS  189 (372)
T ss_dssp             -H---------------------------------------HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEE
T ss_pred             -H---------------------------------------HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEe
Confidence             0                                       0113457999999999975    3455567889999999


Q ss_pred             ccccccccc----CCccccccCCCCEEeCCCCcCccc----CcccccCCCCCCEEeCcCCccccc
Q 046398          637 LSHNIFTGQ----IPENIGNLISIESLDFSTNQLSSK----ISQSMSSLSFLNHLNVSNNLLTGK  693 (794)
Q Consensus       637 Ls~N~l~~~----ip~~l~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~ls~N~l~g~  693 (794)
                      |++|.+++.    +++.+...++|+.|+|++|.++..    ++..+...++|++|||++|++++.
T Consensus       190 Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~  254 (372)
T 3un9_A          190 LLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSE  254 (372)
T ss_dssp             CTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHH
T ss_pred             CCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHH
Confidence            999999853    356678889999999999999864    445566779999999999998754

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.18  E-value=2.4e-09  Score=115.93  Aligned_cols=281  Identities=11%  Similarity=0.134  Sum_probs=150.6

Q ss_pred             ccccCCC-CCCEEeCCCCCCCCCCCCcccCCCCCCCEEEcCCCC---CCCCCcccccCCccccccccCcccccccccccc
Q 046398          111 PSLVDLK-HLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAE---FAGIIPHQLGNLSNLRCLDLSWSEYALQVHSFS  186 (794)
Q Consensus       111 ~~l~~l~-~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~---l~~~~p~~l~~l~~L~~L~Ls~~~~~~~~~~~~  186 (794)
                      .+|.+++ .|+.+.+..+ ++.+ -...|.++++|+.+.+..|.   ++..-..+|.++.+|+.+.+..+-.        
T Consensus        57 ~aF~~~~~~L~sI~iP~s-vt~I-g~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~~~--------  126 (394)
T 4gt6_A           57 RVFCNYKYVLTSVQIPDT-VTEI-GSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDSVT--------  126 (394)
T ss_dssp             TTTTTCCSCCCEEEECTT-CCEE-CTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTTCS--------
T ss_pred             hhccCCCCcCEEEEECCC-eeEE-hHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCccc--------
Confidence            4566774 5899988754 5543 34568889999999987653   5544556788888888887753311        


Q ss_pred             ccccCCCCccCCCCCCCEEECcCCCCCCCCCccccCCCCCCeEeeeccCCCCCCCccccCCCCCCcEEEccCCCCCCCCC
Q 046398          187 WLSGQIPNRLGNLTSLRHLDLSANKFNSTTAGWLSKFNHLEFLSLSSNGLQGTISSIGLENLTSIKTIDLSLNFELGGPI  266 (794)
Q Consensus       187 ~~~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~~~~~~~~~  266 (794)
                         ..-...+..+.+|+.+.+..+ +.......|..+.+|+.+.+..+ ++ .+...++.. .+|+.+.+...  .....
T Consensus       127 ---~I~~~aF~~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~-~I~~~aF~~-~~l~~i~ip~~--~~~i~  197 (394)
T 4gt6_A          127 ---EIDSEAFHHCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS-VT-AIEERAFTG-TALTQIHIPAK--VTRIG  197 (394)
T ss_dssp             ---EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CC-EECTTTTTT-CCCSEEEECTT--CCEEC
T ss_pred             ---eehhhhhhhhcccccccccce-eeeecccceecccccccccccce-ee-Eeccccccc-cceeEEEECCc--ccccc
Confidence               112345777888888888643 44555666778888888887654 22 344434543 56777777522  22222


Q ss_pred             chhhhccCCCCEEEccCCCCCcchHHHHHhhhhcCcCCccEEEeecccccccccccccCCCCCCEEEccCCcCcCCCCCC
Q 046398          267 PTSFVRLCELTSIDVSDVKLSQDLSQVLDILSACGASALESLVFSSSQISGHLTSQLGQFKSLRTLSLDDNCISGPLPPA  346 (794)
Q Consensus       267 ~~~l~~l~~L~~L~l~~~~l~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~  346 (794)
                      ...+..+.+++............                .......+.........+.....+..+.+.. .++.....+
T Consensus       198 ~~af~~c~~l~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~-~v~~i~~~a  260 (394)
T 4gt6_A          198 TNAFSECFALSTITSDSESYPAI----------------DNVLYEKSANGDYALIRYPSQREDPAFKIPN-GVARIETHA  260 (394)
T ss_dssp             TTTTTTCTTCCEEEECCSSSCBS----------------SSCEEEECTTSCEEEEECCTTCCCSEEECCT-TEEEECTTT
T ss_pred             cchhhhccccceecccccccccc----------------cceeecccccccccccccccccccceEEcCC-cceEcccce
Confidence            34455666666665544332210                0000000000000001111223334444332 222233345


Q ss_pred             cCCCCCCCEEEccCCcccccCCccccCCCCCCeEeccCcccccccChhhhcCCCCCCEEECcCCcceeEcCCCCcCcccc
Q 046398          347 LGDLSSLTRLDLSRNMLNGSIPLSLGKISHLEYLDLSNNKMNGTLSEIHFVNLTKLTWFSASGNSLILQVNPNWVPPFQL  426 (794)
Q Consensus       347 l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L  426 (794)
                      |.++..|+.+.+..+... ....++.++++|+.+.+. +.+. .++...|.++.+|+.+.+..+ ++......|..+.+|
T Consensus       261 F~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~-~~i~-~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L  336 (394)
T 4gt6_A          261 FDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFS-SRIT-ELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQL  336 (394)
T ss_dssp             TTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECC-TTCC-EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTC
T ss_pred             eeecccccEEecccccce-ecCcccccccccccccCC-Cccc-ccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCC
Confidence            666666666666544332 334455666666666664 2333 455556666666666666543 333333333333444


Q ss_pred             ceEec
Q 046398          427 KTLLL  431 (794)
Q Consensus       427 ~~L~L  431 (794)
                      +.+.+
T Consensus       337 ~~i~i  341 (394)
T 4gt6_A          337 ERIAI  341 (394)
T ss_dssp             CEEEE
T ss_pred             CEEEE
Confidence            44443

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.14  E-value=8.4e-11  Score=125.12  Aligned_cols=104  Identities=21%  Similarity=0.213  Sum_probs=67.3

Q ss_pred             EEEcccc-cccccCCccccCCCCCCEEEccC-CcCcccCCchhhccccccccccccCCCCcccccccccccccceeeEEE
Q 046398          516 ILILRSN-KFDGFLPIQLCRLTSLQILDVAN-NSLSGTMPGCVNNFSAMATIDSSHQSNAMSYFEVTAYDCEVLEDASIV  593 (794)
Q Consensus       516 ~L~L~~n-~l~~~~p~~~~~l~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~  593 (794)
                      .++++++ ++++ +|. +..+++|++|+|++ |++++..+..|.++++|                               
T Consensus        12 ~v~~~~~n~l~~-ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L-------------------------------   58 (347)
T 2ifg_A           12 GLRCTRDGALDS-LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGEL-------------------------------   58 (347)
T ss_dssp             CEECCSSCCCTT-TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCC-------------------------------
T ss_pred             EEEcCCCCCCCc-cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCC-------------------------------
Confidence            4566666 6663 565 77777777777775 77776655555544444                               


Q ss_pred             EeccchhhcccccceeEEEcCCCccccccChhhhcccCCCEEecccccccccCCccccccCCCCEEeCCCCcCcc
Q 046398          594 MKGSMVEYNSILNLVRIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQIPENIGNLISIESLDFSTNQLSS  668 (794)
Q Consensus       594 ~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~  668 (794)
                                     +.|||++|+|++..|..|.++++|+.|+|++|+|++..+..+..++ |+.|+|++|++..
T Consensus        59 ---------------~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c  117 (347)
T 2ifg_A           59 ---------------RNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLHC  117 (347)
T ss_dssp             ---------------SEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred             ---------------CEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEEEeeCCCccC
Confidence                           6667777777766666677777777777777777644444444444 7777777777664

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.09  E-value=7.6e-09  Score=111.91  Aligned_cols=322  Identities=10%  Similarity=0.094  Sum_probs=162.1

Q ss_pred             ccEEEeecccccccccccccCCCCCCEEEccCCc---CcCCCCCCcCCCCCCCEEEccCCcccccCCccccCCCCCCeEe
Q 046398          305 LESLVFSSSQISGHLTSQLGQFKSLRTLSLDDNC---ISGPLPPALGDLSSLTRLDLSRNMLNGSIPLSLGKISHLEYLD  381 (794)
Q Consensus       305 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~---l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~  381 (794)
                      |+.+.+..+ ++.....+|.++++|+.+.+..|.   ++.....+|.++.+|+.+.+..+ ++......+..+.+|+.+.
T Consensus        66 L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~i~  143 (394)
T 4gt6_A           66 LTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDTVT  143 (394)
T ss_dssp             CCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCEEE
T ss_pred             CEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhccccccc
Confidence            444444332 444445566777777777776553   44334456666677776666543 3323344566677777777


Q ss_pred             ccCcccccccChhhhcCCCCCCEEECcCCcceeEcCCCCcCccccceEecccccCCCCCCcccCCCCCCCEEeccCCCCC
Q 046398          382 LSNNKMNGTLSEIHFVNLTKLTWFSASGNSLILQVNPNWVPPFQLKTLLLMSCHLGPQFPSWLHSQKNLSVLDISNARIS  461 (794)
Q Consensus       382 Ls~N~l~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~  461 (794)
                      +..+. . .+....|..+.+|+.+.+..+ +.......|. ...|+.+.+...- .......+..+.+++......+...
T Consensus       144 lp~~~-~-~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~-~~~l~~i~ip~~~-~~i~~~af~~c~~l~~~~~~~~~~~  218 (394)
T 4gt6_A          144 IPEGV-T-SVADGMFSYCYSLHTVTLPDS-VTAIEERAFT-GTALTQIHIPAKV-TRIGTNAFSECFALSTITSDSESYP  218 (394)
T ss_dssp             CCTTC-C-EECTTTTTTCTTCCEEECCTT-CCEECTTTTT-TCCCSEEEECTTC-CEECTTTTTTCTTCCEEEECCSSSC
T ss_pred             cccee-e-eecccceecccccccccccce-eeEecccccc-ccceeEEEECCcc-cccccchhhhccccceecccccccc
Confidence            75432 2 455556777777777777654 2323333332 3456666654431 1223344556666666665544332


Q ss_pred             CCcchhHHhccccceeccCcccCCCCCCCEEEccCCcccccCChhhhhcCCCCcEEEcccccccccCCccccCCCCCCEE
Q 046398          462 DTIPRWFWNSIFQLSGIIPESFKNFSNLEVLNLGDNEFVGKIPTWMGEGFTSLLILILRSNKFDGFLPIQLCRLTSLQIL  541 (794)
Q Consensus       462 ~~~p~~~~~~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L  541 (794)
                      .. ...+...... .......+.....+..+.+... ++ .+....+.++..|+.+.+.++... ....+|.++++|+.+
T Consensus       219 ~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ip~~-v~-~i~~~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i  293 (394)
T 4gt6_A          219 AI-DNVLYEKSAN-GDYALIRYPSQREDPAFKIPNG-VA-RIETHAFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDI  293 (394)
T ss_dssp             BS-SSCEEEECTT-SCEEEEECCTTCCCSEEECCTT-EE-EECTTTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEE
T ss_pred             cc-cceeeccccc-ccccccccccccccceEEcCCc-ce-EcccceeeecccccEEecccccce-ecCcccccccccccc
Confidence            10 0000000000 0000001112233344444322 22 344444446677777777654332 344566777777777


Q ss_pred             EccCCcCcccCCchhhccccccccccccCCCCcccccccccccccceeeEEEEeccchhhcccccceeEEEcCCCccccc
Q 046398          542 DVANNSLSGTMPGCVNNFSAMATIDSSHQSNAMSYFEVTAYDCEVLEDASIVMKGSMVEYNSILNLVRIIDVSKNNFSGE  621 (794)
Q Consensus       542 ~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~  621 (794)
                      ++. +.++.....+|.++.+|                                              +.+++..+ ++..
T Consensus       294 ~l~-~~i~~I~~~aF~~c~~L----------------------------------------------~~i~lp~~-v~~I  325 (394)
T 4gt6_A          294 EFS-SRITELPESVFAGCISL----------------------------------------------KSIDIPEG-ITQI  325 (394)
T ss_dssp             ECC-TTCCEECTTTTTTCTTC----------------------------------------------CEEECCTT-CCEE
T ss_pred             cCC-CcccccCceeecCCCCc----------------------------------------------CEEEeCCc-ccEe
Confidence            775 33443444455555555                                              44455432 3333


Q ss_pred             cChhhhcccCCCEEecccccccccCCccccccCCCCEEeCCCCcCcccCcccccCCCCCCEEeCcCCcc
Q 046398          622 IPMELTYLRGLQSLNLSHNIFTGQIPENIGNLISIESLDFSTNQLSSKISQSMSSLSFLNHLNVSNNLL  690 (794)
Q Consensus       622 ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l  690 (794)
                      -...|.++.+|+.+.|..+ ++..-..+|.++++|+.+++.++....   ..+.....|+.+.+..|.+
T Consensus       326 ~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i~i~~~~~  390 (394)
T 4gt6_A          326 LDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQW---NAISTDSGLQNLPVAPGSI  390 (394)
T ss_dssp             CTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH---HTCBCCCCC----------
T ss_pred             hHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeeh---hhhhccCCCCEEEeCCCCE
Confidence            4456777778888877644 553334567778888888887775432   3456667777777665543

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.04  E-value=4.6e-10  Score=119.38  Aligned_cols=103  Identities=24%  Similarity=0.262  Sum_probs=78.2

Q ss_pred             EEeCCCC-CCCCCCCCcccCCCCCCCEEEcCC-CCCCCCCcccccCCccccccccCccccccccccccccccCCCCccCC
Q 046398          121 HLDLSGN-DFQGIRIPKYLGSLKNLRYLNLSG-AEFAGIIPHQLGNLSNLRCLDLSWSEYALQVHSFSWLSGQIPNRLGN  198 (794)
Q Consensus       121 ~L~Ls~n-~l~~~~~p~~~~~l~~L~~L~Ls~-n~l~~~~p~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~~~~lp~~l~~  198 (794)
                      .++++++ +++  .+|. +..+++|++|+|++ |.+++..|..|+++++|++|+|++|.          +++..|..|.+
T Consensus        12 ~v~~~~~n~l~--~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~----------l~~~~~~~~~~   78 (347)
T 2ifg_A           12 GLRCTRDGALD--SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSG----------LRFVAPDAFHF   78 (347)
T ss_dssp             CEECCSSCCCT--TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSC----------CCEECTTGGGS
T ss_pred             EEEcCCCCCCC--ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCc----------cceeCHHHhcC
Confidence            4577877 787  4677 88888888888885 88887777778888888888888776          34455667778


Q ss_pred             CCCCCEEECcCCCCCCCCCccccCCCCCCeEeeeccCCC
Q 046398          199 LTSLRHLDLSANKFNSTTAGWLSKFNHLEFLSLSSNGLQ  237 (794)
Q Consensus       199 l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~  237 (794)
                      +++|++|+|++|++++.++..+..++ |++|++.+|.+.
T Consensus        79 l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~  116 (347)
T 2ifg_A           79 TPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLH  116 (347)
T ss_dssp             CSCCCEEECCSSCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred             CcCCCEEeCCCCccceeCHHHcccCC-ceEEEeeCCCcc
Confidence            88888888888888777766666655 777777777765

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.81  E-value=3.3e-09  Score=112.14  Aligned_cols=164  Identities=13%  Similarity=0.169  Sum_probs=89.3

Q ss_pred             cccCCCCCCCEEEccCCcccccCChhhhhcCCCCcEEEcccccccccCCcccc--CCCCCCEEEccCC--cCcccCCchh
Q 046398          481 ESFKNFSNLEVLNLGDNEFVGKIPTWMGEGFTSLLILILRSNKFDGFLPIQLC--RLTSLQILDVANN--SLSGTMPGCV  556 (794)
Q Consensus       481 ~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~~~--~l~~L~~L~Ls~N--~l~~~~p~~~  556 (794)
                      ..+..+|+|+.|++++|.-. .++. +  ..++|+.|+|..|.+.......+.  .+++|+.|+|+.+  ...+..  .+
T Consensus       166 ~ll~~~P~L~~L~L~g~~~l-~l~~-~--~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~--~~  239 (362)
T 2ra8_A          166 PVLDAMPLLNNLKIKGTNNL-SIGK-K--PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDG--DM  239 (362)
T ss_dssp             HHHHTCTTCCEEEEECCBTC-BCCS-C--BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCS--CG
T ss_pred             HHHhcCCCCcEEEEeCCCCc-eecc-c--cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccch--hH
Confidence            33455677777777766311 2333 2  266777777777766543323333  5677777776531  111100  00


Q ss_pred             hccccccccccccCCCCcccccccccccccceeeEEEEeccchhhcccccceeEEEcCCCccccccChhhh---cccCCC
Q 046398          557 NNFSAMATIDSSHQSNAMSYFEVTAYDCEVLEDASIVMKGSMVEYNSILNLVRIIDVSKNNFSGEIPMELT---YLRGLQ  633 (794)
Q Consensus       557 ~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~---~l~~L~  633 (794)
                      ..+..+                                     .....++.|+.|+|++|.+.+..+..+.   .+++|+
T Consensus       240 ~~l~~~-------------------------------------l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~  282 (362)
T 2ra8_A          240 NVFRPL-------------------------------------FSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLE  282 (362)
T ss_dssp             GGTGGG-------------------------------------SCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCS
T ss_pred             HHHHHH-------------------------------------HhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCC
Confidence            000000                                     0001245667777877777654444443   366778


Q ss_pred             EEeccccccccc----CCccccccCCCCEEeCCCCcCcccCcccccC-CCCCCEEeCcCCc
Q 046398          634 SLNLSHNIFTGQ----IPENIGNLISIESLDFSTNQLSSKISQSMSS-LSFLNHLNVSNNL  689 (794)
Q Consensus       634 ~L~Ls~N~l~~~----ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~-l~~L~~L~ls~N~  689 (794)
                      +|+|+.|.+++.    ++..+..+++|+.|+|++|.++...-..+.. +  ...++++.++
T Consensus       283 ~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~~  341 (362)
T 2ra8_A          283 TMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSDSQ  341 (362)
T ss_dssp             EEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred             EEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence            888887777653    3444556777888888877776544333433 2  3556777665

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.78  E-value=1.2e-06  Score=93.96  Aligned_cols=63  Identities=10%  Similarity=0.112  Sum_probs=39.9

Q ss_pred             ChhhhcccCCCEEecccccccccCCccccccCCCCEEeCCCCcCcccCcccccCCCCCCEEeCc
Q 046398          623 PMELTYLRGLQSLNLSHNIFTGQIPENIGNLISIESLDFSTNQLSSKISQSMSSLSFLNHLNVS  686 (794)
Q Consensus       623 p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls  686 (794)
                      ...|.++++|+.+++.++.++..-..+|.++++|+.++|..+ ++......|.++++|+.+.+.
T Consensus       279 ~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip  341 (379)
T 4h09_A          279 YLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYP  341 (379)
T ss_dssp             TTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCC
T ss_pred             ccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEEC
Confidence            344566677777777766666444556777777777777544 554555667777777766553

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.70  E-value=8e-09  Score=109.21  Aligned_cols=87  Identities=17%  Similarity=0.253  Sum_probs=51.1

Q ss_pred             ccCCCCEEEccCCCCCcchHHHHHhhhhcCcCCccEEEeeccccccc----ccccccCCCCCCEEEccCCcCcCCCCCCc
Q 046398          272 RLCELTSIDVSDVKLSQDLSQVLDILSACGASALESLVFSSSQISGH----LTSQLGQFKSLRTLSLDDNCISGPLPPAL  347 (794)
Q Consensus       272 ~l~~L~~L~l~~~~l~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~~p~~l  347 (794)
                      .+++|+.|++.+|.+.+..+..+...  ..+++|++|+|+.|.+++.    ++..+..+++|+.|++++|.++...-..+
T Consensus       250 ~~p~Lr~L~L~~~~i~~~~~~~la~a--~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l  327 (362)
T 2ra8_A          250 RFPNLKWLGIVDAEEQNVVVEMFLES--DILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKEL  327 (362)
T ss_dssp             TCTTCCEEEEESCTTHHHHHHHHHHC--SSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHH
T ss_pred             CCCCcCEEeCCCCCCchHHHHHHHhC--ccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHH
Confidence            35677777777776665444333321  1234777788877777663    23333456788888888887764332223


Q ss_pred             CC-CCCCCEEEccCCc
Q 046398          348 GD-LSSLTRLDLSRNM  362 (794)
Q Consensus       348 ~~-l~~L~~L~Ls~n~  362 (794)
                      .. +  ...++++.++
T Consensus       328 ~~al--g~~~~~~~~~  341 (362)
T 2ra8_A          328 QKSL--PMKIDVSDSQ  341 (362)
T ss_dssp             HHHC--CSEEECCSBC
T ss_pred             HHHc--CCEEEecCCc
Confidence            22 1  3567777765

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.69  E-value=1.1e-06  Score=94.42  Aligned_cols=71  Identities=8%  Similarity=0.061  Sum_probs=46.7

Q ss_pred             ccceeEEEcCCCccccccChhhhcccCCCEEecccccccccCCccccccCCCCEEeCCCCcCcccCcccccCC
Q 046398          605 LNLVRIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQIPENIGNLISIESLDFSTNQLSSKISQSMSSL  677 (794)
Q Consensus       605 l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l  677 (794)
                      +.+|+.+++.++.++..-...|.++.+|+.++|..+ ++..-..+|.++++|+.+.+..+ ++..-...|.+.
T Consensus       285 c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c  355 (379)
T 4h09_A          285 CSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGS  355 (379)
T ss_dssp             CTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTS
T ss_pred             ccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCC
Confidence            344467777777776555667788888888888654 55344567888888888877654 544444555544

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.44  E-value=9.6e-08  Score=90.97  Aligned_cols=83  Identities=16%  Similarity=0.202  Sum_probs=44.3

Q ss_pred             eEEEcCCCccccc----cChhhhcccCCCEEeccccccccc----CCccccccCCCCEEeC--CCCcCccc----Ccccc
Q 046398          609 RIIDVSKNNFSGE----IPMELTYLRGLQSLNLSHNIFTGQ----IPENIGNLISIESLDF--STNQLSSK----ISQSM  674 (794)
Q Consensus       609 ~~LdLs~N~l~~~----ip~~l~~l~~L~~L~Ls~N~l~~~----ip~~l~~l~~L~~L~L--s~N~l~~~----~p~~l  674 (794)
                      ++|||++|++...    +...+...++|++|+|++|.|+..    +.+.+...++|++|+|  ++|.+...    +...+
T Consensus        68 ~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L  147 (185)
T 1io0_A           68 KKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANML  147 (185)
T ss_dssp             CEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHH
T ss_pred             CEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHH
Confidence            4444444444321    223334445566666666666532    2344555566666666  56666543    23344


Q ss_pred             cCCCCCCEEeCcCCccc
Q 046398          675 SSLSFLNHLNVSNNLLT  691 (794)
Q Consensus       675 ~~l~~L~~L~ls~N~l~  691 (794)
                      ...++|++|++++|.+.
T Consensus       148 ~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          148 EKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HHCSSCCEEECCCSSHH
T ss_pred             HhCCCcCEEeccCCCCC
Confidence            44566777777777654

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.39  E-value=1.7e-07  Score=93.77  Aligned_cols=84  Identities=25%  Similarity=0.304  Sum_probs=64.3

Q ss_pred             EEcCCCccc---cccChhhhcccCCCEEecccccccc--cCCccccccCCCCEEeCCCCcCcccCcccccCCC--CCCEE
Q 046398          611 IDVSKNNFS---GEIPMELTYLRGLQSLNLSHNIFTG--QIPENIGNLISIESLDFSTNQLSSKISQSMSSLS--FLNHL  683 (794)
Q Consensus       611 LdLs~N~l~---~~ip~~l~~l~~L~~L~Ls~N~l~~--~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~--~L~~L  683 (794)
                      ++++.|+..   +.++....++++|+.|+|++|+|++  .+|..+..+++|+.|+|++|++++.  ..+..+.  .|++|
T Consensus       148 l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L  225 (267)
T 3rw6_A          148 IDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEEL  225 (267)
T ss_dssp             CCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEE
T ss_pred             ccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceE
Confidence            667777433   2233333568899999999999987  5667788999999999999999875  3344444  89999


Q ss_pred             eCcCCcccccCCC
Q 046398          684 NVSNNLLTGKIPS  696 (794)
Q Consensus       684 ~ls~N~l~g~iP~  696 (794)
                      +|++|++++.+|.
T Consensus       226 ~L~~Npl~~~~~~  238 (267)
T 3rw6_A          226 WLDGNSLCDTFRD  238 (267)
T ss_dssp             ECTTSTTGGGCSS
T ss_pred             EccCCcCccccCc
Confidence            9999999998874

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.34  E-value=4.5e-07  Score=90.67  Aligned_cols=79  Identities=18%  Similarity=0.232  Sum_probs=67.4

Q ss_pred             cccceeEEEcCCCcccc--ccChhhhcccCCCEEecccccccccCCccccccC--CCCEEeCCCCcCcccCcc-------
Q 046398          604 ILNLVRIIDVSKNNFSG--EIPMELTYLRGLQSLNLSHNIFTGQIPENIGNLI--SIESLDFSTNQLSSKISQ-------  672 (794)
Q Consensus       604 ~l~~L~~LdLs~N~l~~--~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~--~L~~L~Ls~N~l~~~~p~-------  672 (794)
                      .++.|+.|+|++|++++  .+|..+..+++|+.|+|++|+|++.  +.+..+.  +|++|+|++|.+.+.+|.       
T Consensus       168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~  245 (267)
T 3rw6_A          168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISA  245 (267)
T ss_dssp             HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred             hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHHH
Confidence            46789999999999998  5678888999999999999999965  4466666  999999999999987763       


Q ss_pred             cccCCCCCCEEe
Q 046398          673 SMSSLSFLNHLN  684 (794)
Q Consensus       673 ~l~~l~~L~~L~  684 (794)
                      .+..+++|+.||
T Consensus       246 il~~~P~L~~LD  257 (267)
T 3rw6_A          246 IRERFPKLLRLD  257 (267)
T ss_dssp             HHHHCTTCCEES
T ss_pred             HHHHCcccCeEC
Confidence            467889999887

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.30  E-value=2.5e-07  Score=88.01  Aligned_cols=61  Identities=15%  Similarity=0.216  Sum_probs=37.0

Q ss_pred             ceeEEEcCCCccccc----cChhhhcccCCCEEec--cccccccc----CCccccccCCCCEEeCCCCcCc
Q 046398          607 LVRIIDVSKNNFSGE----IPMELTYLRGLQSLNL--SHNIFTGQ----IPENIGNLISIESLDFSTNQLS  667 (794)
Q Consensus       607 ~L~~LdLs~N~l~~~----ip~~l~~l~~L~~L~L--s~N~l~~~----ip~~l~~l~~L~~L~Ls~N~l~  667 (794)
                      .|+.|+|++|.+...    +...+...++|++|+|  ++|.++..    +.+.+...++|+.|+|++|.+.
T Consensus        94 ~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A           94 TLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             SCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             CcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence            345666666666542    3444555667777777  66777643    2334445577777777777764

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.90  E-value=3.7e-06  Score=77.76  Aligned_cols=83  Identities=13%  Similarity=0.094  Sum_probs=69.2

Q ss_pred             ceeEEEcCCCccccccChhhhcccCCCEEeccccc-ccccCCcccccc----CCCCEEeCCCCc-CcccCcccccCCCCC
Q 046398          607 LVRIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNI-FTGQIPENIGNL----ISIESLDFSTNQ-LSSKISQSMSSLSFL  680 (794)
Q Consensus       607 ~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~-l~~~ip~~l~~l----~~L~~L~Ls~N~-l~~~~p~~l~~l~~L  680 (794)
                      .|+.||++++.++..--..+..+++|++|+|++|. ++..--..++.+    ++|++|+|++|. ++...-..+..+++|
T Consensus        62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L  141 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL  141 (176)
T ss_dssp             CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred             eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence            57999999999987766778899999999999995 776544455554    479999999985 887666778899999


Q ss_pred             CEEeCcCCc
Q 046398          681 NHLNVSNNL  689 (794)
Q Consensus       681 ~~L~ls~N~  689 (794)
                      ++|++++++
T Consensus       142 ~~L~L~~c~  150 (176)
T 3e4g_A          142 KYLFLSDLP  150 (176)
T ss_dssp             CEEEEESCT
T ss_pred             CEEECCCCC
Confidence            999999986

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.65  E-value=2.5e-05  Score=72.24  Aligned_cols=85  Identities=12%  Similarity=0.104  Sum_probs=51.4

Q ss_pred             CCCCEEECcCCCCCCCCCccccCCCCCCeEeeeccC-CCCCCCccccCCC----CCCcEEEccCCCCCCCCCchhhhccC
Q 046398          200 TSLRHLDLSANKFNSTTAGWLSKFNHLEFLSLSSNG-LQGTISSIGLENL----TSIKTIDLSLNFELGGPIPTSFVRLC  274 (794)
Q Consensus       200 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~~i~~~~l~~l----~~L~~L~L~~~~~~~~~~~~~l~~l~  274 (794)
                      .+|++||++++.++......+..+++|++|+|++|. +++.--. .+..+    ++|++|+++++..++..--..+.+++
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~-~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~  139 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLE-RLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFR  139 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHH-HHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCT
T ss_pred             ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHH-HHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCC
Confidence            456777777776666655566677777777777764 4322111 23332    35777777655556555555566677


Q ss_pred             CCCEEEccCCC
Q 046398          275 ELTSIDVSDVK  285 (794)
Q Consensus       275 ~L~~L~l~~~~  285 (794)
                      +|+.|+++++.
T Consensus       140 ~L~~L~L~~c~  150 (176)
T 3e4g_A          140 NLKYLFLSDLP  150 (176)
T ss_dssp             TCCEEEEESCT
T ss_pred             CCCEEECCCCC
Confidence            77777777665

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=96.98  E-value=0.00043  Score=65.15  Aligned_cols=65  Identities=15%  Similarity=0.149  Sum_probs=32.7

Q ss_pred             hhcccCCCEEeccccccccc----CCccccccCCCCEEeCCCC---cCcc----cCcccccCCCCCCEEeCcCCcc
Q 046398          626 LTYLRGLQSLNLSHNIFTGQ----IPENIGNLISIESLDFSTN---QLSS----KISQSMSSLSFLNHLNVSNNLL  690 (794)
Q Consensus       626 l~~l~~L~~L~Ls~N~l~~~----ip~~l~~l~~L~~L~Ls~N---~l~~----~~p~~l~~l~~L~~L~ls~N~l  690 (794)
                      +..-+.|++|+|++|.|+..    +-+.+..-+.|++|+|++|   .+..    .+.+.+..-+.|+.|+++.|..
T Consensus        94 L~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~  169 (197)
T 1pgv_A           94 IETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM  169 (197)
T ss_dssp             HHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred             HhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence            33445556666666655432    1223344455666666544   2222    2334445556666666666543

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.83  E-value=0.0017  Score=57.06  Aligned_cols=56  Identities=16%  Similarity=0.321  Sum_probs=25.3

Q ss_pred             eEEEcCCCccc-cccChhhhcccCCCEEecccccccccCCccccccCCCCEEeCCCCcC
Q 046398          609 RIIDVSKNNFS-GEIPMELTYLRGLQSLNLSHNIFTGQIPENIGNLISIESLDFSTNQL  666 (794)
Q Consensus       609 ~~LdLs~N~l~-~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l  666 (794)
                      ..+|.+++.++ ..+|..+.  ++|+.|+|++|+|+..-+..|..+++|+.|+|++|.+
T Consensus        11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~   67 (130)
T 3rfe_A           11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW   67 (130)
T ss_dssp             TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred             CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence            34555555554 23443221  2445555555555533333344444444444444444

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.63  E-value=0.0025  Score=55.95  Aligned_cols=58  Identities=14%  Similarity=0.192  Sum_probs=50.0

Q ss_pred             CEEeccccccc-ccCCccccccCCCCEEeCCCCcCcccCcccccCCCCCCEEeCcCCcccc
Q 046398          633 QSLNLSHNIFT-GQIPENIGNLISIESLDFSTNQLSSKISQSMSSLSFLNHLNVSNNLLTG  692 (794)
Q Consensus       633 ~~L~Ls~N~l~-~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g  692 (794)
                      ..++.+++.++ ..+|..+.  ++|+.|+|++|+|+...+..|..+++|+.|+|++|++..
T Consensus        11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~C   69 (130)
T 3rfe_A           11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRC   69 (130)
T ss_dssp             TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBC
T ss_pred             CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeec
Confidence            47999999997 46776543  479999999999999888889999999999999999864

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=96.51  E-value=0.0015  Score=61.40  Aligned_cols=85  Identities=12%  Similarity=0.147  Sum_probs=64.9

Q ss_pred             cccceeEEEcCCC-cccc----ccChhhhcccCCCEEeccccccccc----CCccccccCCCCEEeCCCCcCccc----C
Q 046398          604 ILNLVRIIDVSKN-NFSG----EIPMELTYLRGLQSLNLSHNIFTGQ----IPENIGNLISIESLDFSTNQLSSK----I  670 (794)
Q Consensus       604 ~l~~L~~LdLs~N-~l~~----~ip~~l~~l~~L~~L~Ls~N~l~~~----ip~~l~~l~~L~~L~Ls~N~l~~~----~  670 (794)
                      .-+.|+.|+|++| ++..    .+.+.+..-+.|+.|+|++|+|...    +-+.+..-+.|+.|+|++|.|...    +
T Consensus        39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~al  118 (197)
T 1pgv_A           39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL  118 (197)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred             cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHH
Confidence            4567899999986 7754    2455667778999999999999753    334455678999999999999864    3


Q ss_pred             cccccCCCCCCEEeCcCC
Q 046398          671 SQSMSSLSFLNHLNVSNN  688 (794)
Q Consensus       671 p~~l~~l~~L~~L~ls~N  688 (794)
                      -+.+..-+.|++|+|++|
T Consensus       119 a~aL~~N~tL~~L~L~n~  136 (197)
T 1pgv_A          119 LRSTLVTQSIVEFKADNQ  136 (197)
T ss_dssp             HHHTTTTCCCSEEECCCC
T ss_pred             HHHHhhCCceeEEECCCC
Confidence            445666678999999865

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	794
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	1e-21
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	5e-17
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	3e-07
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-21
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	8e-18
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	3e-17
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-13
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-12
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-10
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	3e-08
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	3e-07
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	3e-14
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	8e-14
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-13
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-11
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-10
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	6e-09
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-05
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	4e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-11
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	9e-07
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.003
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	3e-11
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	3e-06
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	1e-04
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	9e-04
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	1e-09
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	6e-09
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	7e-07
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	4e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	4e-09
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	3e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.002
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	1e-07
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	4e-07
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	5e-07
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	5e-04
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.002
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	2e-07
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	3e-05
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	0.003
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	4e-07
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	2e-05
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	5e-05
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	0.003
d2omxa2	199	c.10.2.1 (A:37-235) Internalin B {Listeria monocyt	1e-06
d2omxa2	199	c.10.2.1 (A:37-235) Internalin B {Listeria monocyt	0.004
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	9e-06
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	2e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	4e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	3e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	8e-04
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	1e-04
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	0.002
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	2e-04
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	0.004
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	2e-04
d1m9la_	198	c.10.3.1 (A:) Outer arm dynein light chain 1 {Gree	3e-04
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	0.001
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	0.002
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	0.004

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 94.4 bits (233), Expect = 1e-21
 Identities = 79/361 (21%), Positives = 125/361 (34%), Gaps = 64/361 (17%)

Query: 31  CTDSEREALLKLKQDLKDPSNRLGSWVVDGDCC--KWAEVVCSNLTGHVLQLSLRNPFRN 88
           C   +++ALL++K+DL +P+  L SW+   DCC   W  V+C   T              
Sbjct: 3   CNPQDKQALLQIKKDLGNPTT-LSSWLPTTDCCNRTWLGVLCDTDTQTY----------- 50

Query: 89  DLRYATTEYEDYMRSMLSGNVNPSLVDLKHLTHLDLSGNDFQG-IRIPKYLGSLKNLRYL 147
                                         + +LDLSG +      IP  L +L  L +L
Sbjct: 51  -----------------------------RVNNLDLSGLNLPKPYPIPSSLANLPYLNFL 81

Query: 148 NLSGAE-FAGIIPHQLGNLSNLRCLDLSWSEYALQVHSFSWLSGQIPNRLGNLTSLRHLD 206
            + G     G IP  +  L+ L  L ++ +  +  +  F             + +L  LD
Sbjct: 82  YIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLS----------QIKTLVTLD 131

Query: 207 LSANKFNSTTAGWLSKFNHLEFLSLSSNGLQGTISSIGLENLTSIKTIDLSLNFELGGPI 266
            S N  + T    +S   +L  ++   N + G I            ++ +S N   G   
Sbjct: 132 FSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIP 191

Query: 267 PTSFVRLCELTSIDVSDVKLSQDLSQVLDILSACGASALESLVFSSSQISGHLTSQLGQF 326
           PT                          D     G+      +  +         ++G  
Sbjct: 192 PTFANLNL--------AFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLS 243

Query: 327 KSLRTLSLDDNCISGPLPPALGDLSSLTRLDLSRNMLNGSIPLSLGKISHLEYLDLSNNK 386
           K+L  L L +N I G LP  L  L  L  L++S N L G IP   G +   +    +NNK
Sbjct: 244 KNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYANNK 302

Query: 387 M 387
            
Sbjct: 303 C 303

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 80.6 bits (197), Expect = 5e-17
 Identities = 63/276 (22%), Positives = 101/276 (36%), Gaps = 15/276 (5%)

Query: 449 NLSVLDISNARISDTIPRWFWNSIFQLSGIIPESFKNFSNLEVLNLGDNEFVGKIPTWMG 508
            ++ LD+S   +    P             IP S  N   L  L +G    +        
Sbjct: 51  RVNNLDLSGLNLPKPYP-------------IPSSLANLPYLNFLYIGGINNLVGPIPPAI 97

Query: 509 EGFTSLLILILRSNKFDGFLPIQLCRLTSLQILDVANNSLSGTMPGCVNNFSAMATIDSS 568
              T L  L +      G +P  L ++ +L  LD + N+LSGT+P  +++   +  I   
Sbjct: 98  AKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFD 157

Query: 569 HQSNAMSYFEVTAYDCEVLEDASIVMKG-SMVEYNSILNLVRIIDVSKNNFSGEIPMELT 627
               + +  +      ++    +I     +     +  NL         N        L 
Sbjct: 158 GNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLF 217

Query: 628 YLRGLQSLNLSHNIFTGQIPENIGNLISIESLDFSTNQLSSKISQSMSSLSFLNHLNVSN 687
                                 +G   ++  LD   N++   + Q ++ L FL+ LNVS 
Sbjct: 218 GSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSF 277

Query: 688 NLLTGKIPSSTQLQSFDASCFVGNN-LCGPPLPSCT 722
           N L G+IP    LQ FD S +  N  LCG PLP+CT
Sbjct: 278 NNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLPACT 313

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 50.9 bits (120), Expect = 3e-07
 Identities = 52/285 (18%), Positives = 89/285 (31%), Gaps = 24/285 (8%)

Query: 221 SKFNHLEFLSLSSNGLQGTIS-SIGLENLTSIKTIDLSLNFELGGPIPTSFVRLCELTSI 279
           ++   +  L LS   L         L NL  +  + +     L GPIP +  +L +L   
Sbjct: 47  TQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLH-- 104

Query: 280 DVSDVKLSQDLSQVLDILSACGASALESLVFSSSQISGHLTSQLGQFKSLRTLSLDDNCI 339
               + ++                 L +L FS + +SG L   +    +L  ++ D N I
Sbjct: 105 ---YLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRI 161

Query: 340 SGPLPPALGDLSSLTRLDLSRNMLNGSIPLSLGKISHLEYLDLSNNKMNGTLSEIHFVNL 399
           SG +P + G  S L                      +L ++DLS N + G  S +   + 
Sbjct: 162 SGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDK 221

Query: 400 TKLTWFSASGNSLILQVNPNWVPPFQLKTLLLMSCHLGPQFPSWLHSQKNLSVLDISNAR 459
                  A  +                    L +  +    P  L   K L  L++S   
Sbjct: 222 NTQKIHLAKNSLAFDLGKVGLSKNLNGL--DLRNNRIYGTLPQGLTQLKFLHSLNVSFNN 279

Query: 460 ISDTIPRWFWNSIFQLSGIIPESFKNFSNLEVLNLGDNEFVGKIP 504
           +   IP                   N    +V    +N+ +   P
Sbjct: 280 LCGEIP----------------QGGNLQRFDVSAYANNKCLCGSP 308

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 94.7 bits (234), Expect = 2e-21
 Identities = 69/364 (18%), Positives = 133/364 (36%), Gaps = 22/364 (6%)

Query: 325 QFKSLRTLSLDDNCISGPLPPALGDLSSLTRLDLSRNMLNGSIPLSLGKISHLEYLDLSN 384
               + TL  D   I       +  L++LT+++ S N L    P  L  ++ L  + ++N
Sbjct: 42  DLDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNN 97

Query: 385 NKMNGTLSEIHFVNLTKLTWFSASGNSLILQVNPNWVPPFQLKTLLLMSCHLGPQFPSWL 444
           N++       +  NLT LT F+     +    N   +   +L +  +          S  
Sbjct: 98  NQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQ 157

Query: 445 HSQKNLSVLDISNARISDTIPRWFWNSIFQLSGIIPESFKNFSNLEVLNLGDNEFVGKIP 504
                     +++ +    +       I              +NLE L   +N+     P
Sbjct: 158 QLSFG---NQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITP 214

Query: 505 TWMGEGFTSLLILILRSNKFDGFLPIQLCRLTSLQILDVANNSLSGTMPGCVNNFSAMAT 564
             +    T+L  L L  N+        L  LT+L  LD+ANN +S   P  ++  + +  
Sbjct: 215 LGI---LTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTE 267

Query: 565 IDSSHQSNAMSYFEVTAYDCEVLEDASIVMKGSMVEYNSILNLVRIIDVSKNNFSGEIPM 624
           +       +             LE     ++   +   S L  +  + +  NN S   P 
Sbjct: 268 LKLGANQISNISPLAGLTALTNLELNENQLE--DISPISNLKNLTYLTLYFNNISDISP- 324

Query: 625 ELTYLRGLQSLNLSHNIFTGQIPENIGNLISIESLDFSTNQLSSKISQSMSSLSFLNHLN 684
            ++ L  LQ L  ++N  +     ++ NL +I  L    NQ+S      +++L+ +  L 
Sbjct: 325 -VSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQISDLT--PLANLTRITQLG 379

Query: 685 VSNN 688
           +++ 
Sbjct: 380 LNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 83.9 bits (206), Expect = 8e-18
 Identities = 63/383 (16%), Positives = 134/383 (34%), Gaps = 24/383 (6%)

Query: 326 FKSLRTLSLDDNCISGPLPPALGDLSSLTRLDLSRNMLNGSIPLSLGKISHLEYLDLSNN 385
                   L    ++  +     DL  +T L   R  +  SI   +  +++L  ++ SNN
Sbjct: 21  LAEKMKTVLGKTNVTDTVSQT--DLDQVTTLQADRLGIK-SID-GVEYLNNLTQINFSNN 76

Query: 386 KMNGTLSEIHFVNLTKLTWFSASGNSLILQVNPNWVPPFQLKTLLLMSCHLGPQFPSWLH 445
           ++          NLTKL     + N      +   +      T L +  +         +
Sbjct: 77  QLTDI---TPLKNLTKLVDILMNNNQ---IADITPLANLTNLTGLTLFNNQITDIDPLKN 130

Query: 446 SQKNLSVLDISNARISDTIPRWFWNSIFQLSGIIPESFKNFSNLEVLNLGDNEFVGKIPT 505
                 +   SN     +      +      G      K  +NL  L   D         
Sbjct: 131 LTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDI 190

Query: 506 WMGEGFTSLLILILRSNKFDGFLPIQLCRLTSLQILDVANNSLSGTMPGCVNNFSAMATI 565
            +    T+L  LI  +N+     P+ +   T+L  L +  N L     G + + + +  +
Sbjct: 191 SVLAKLTNLESLIATNNQISDITPLGIL--TNLDELSLNGNQLKD--IGTLASLTNLTDL 246

Query: 566 DSSHQSNAMSYFEVTAYDCEVLEDASIVMKGSMVEYNSILNLVRIIDVSKNNFSGEIPME 625
           D ++   +             L+  +  +       + +  L  + ++  N    E    
Sbjct: 247 DLANNQISNLAPLSGLTKLTELKLGANQISN----ISPLAGLTALTNLELNENQLEDISP 302

Query: 626 LTYLRGLQSLNLSHNIFTGQIPENIGNLISIESLDFSTNQLSSKISQSMSSLSFLNHLNV 685
           ++ L+ L  L L  N  +   P  + +L  ++ L F+ N++S     S+++L+ +N L+ 
Sbjct: 303 ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSA 358

Query: 686 SNNLLTGKIPSS--TQLQSFDAS 706
            +N ++   P +  T++     +
Sbjct: 359 GHNQISDLTPLANLTRITQLGLN 381

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 82.4 bits (202), Expect = 3e-17
 Identities = 75/392 (19%), Positives = 131/392 (33%), Gaps = 51/392 (13%)

Query: 111 PSLVDLKHLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRC 170
            S  DL  +T L        GI+    +  L NL  +N S  +   I P  L NL+ L  
Sbjct: 38  VSQTDLDQVTTLQADRL---GIKSIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVD 92

Query: 171 LDLSWSEYALQVHSFSWLSGQIPNRLGNLTSLRHLDLSANKFNSTTAGWLS-KFNHLEFL 229
           + ++ ++ A      +  +        N  +      +    N       +         
Sbjct: 93  ILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSG 152

Query: 230 SLSSNGLQGTISSIGLENLTSIKTIDLSLNFELGGPIPTSFVRLCELTSIDVSDVKLSQD 289
             S   L        L+ L ++ T++            +   +L  L S+  ++ ++S  
Sbjct: 153 LTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQIS-- 210

Query: 290 LSQVLDILSACGASALESLVFSSSQISGHLTSQLGQFKSLRTLSLDDNCISGPLPPALGD 349
                DI      + L+ L  + +Q+       L    +L  L L +N IS   P  L  
Sbjct: 211 -----DITPLGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP--LSG 261

Query: 350 LSSLTRLDLSRNMLNGSIPLSLGKISHLEYLDLSNNKMNGTLSEIHFVNLTKLTWFSASG 409
           L+ LT L L  N ++   PL     + L  L       N         NL  LT+ +   
Sbjct: 262 LTKLTELKLGANQISNISPL-----AGLTALTNLELNENQLEDISPISNLKNLTYLTLYF 316

Query: 410 NSLILQVNPNWVPPF----QLKTLLLMSCHLGPQFPSWLHSQKNLSVLDISNARISDTIP 465
           N++      + + P     +L+ L   +  +     S L +  N++ L   + +ISD  P
Sbjct: 317 NNI------SDISPVSSLTKLQRLFFANNKV--SDVSSLANLTNINWLSAGHNQISDLTP 368

Query: 466 RWFWNSIFQLSGIIPESFKNFSNLEVLNLGDN 497
                              N + +  L L D 
Sbjct: 369 -----------------LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 70.8 bits (172), Expect = 1e-13
 Identities = 80/414 (19%), Positives = 137/414 (33%), Gaps = 56/414 (13%)

Query: 115 DLKHLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRCLDLS 174
            L       L   +         L  +  L+   L      G+       L+NL  ++ S
Sbjct: 20  ALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGV-----EYLNNLTQINFS 74

Query: 175 WSEYALQVHSFSWLSGQIPNRLGNLTSLRHLDLSANKFNSTTAGWLSKFNHLEFLSLSSN 234
            ++          L+   P  L NLT L  + ++ N+    T            L  +  
Sbjct: 75  NNQ----------LTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQI 122

Query: 235 GLQGTISSIGLENLTSIKTIDLSLNFELGGPIPTSFVRLCELTSIDVSDVKLSQDLSQVL 294
                + ++   N   + +  +S    L G      +      +       L+      +
Sbjct: 123 TDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDI 182

Query: 295 DILSAC------GASALESLVFSSSQISGHLTSQLGQFKSLRTLSLDDNCISGPLPPALG 348
                         + LESL+ +++QIS    + LG   +L  LSL+ N +       L 
Sbjct: 183 SSNKVSDISVLAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQLKDI--GTLA 238

Query: 349 DLSSLTRLDLSRNMLNGSIPLSLGKISHLEYLDLSNNKMNGTLSEIHFVNLTKLTWFSAS 408
            L++LT LDL+ N ++   PLS   ++ L  L L  N+++          LT LT    +
Sbjct: 239 SLTNLTDLDLANNQISNLAPLS--GLTKLTELKLGANQISNI---SPLAGLTALTNLELN 293

Query: 409 GNSLILQVNPNWVPPFQLKTLLLMSCHLGPQFPSWLHSQKNLSVLDISNARISDTIPRWF 468
            N   L+          L  L L   ++     S + S   L  L  +N ++SD      
Sbjct: 294 EN--QLEDISPISNLKNLTYLTLYFNNI--SDISPVSSLTKLQRLFFANNKVSD------ 343

Query: 469 WNSIFQLSGIIPESFKNFSNLEVLNLGDNEFVGKIPTWMGEGFTSLLILILRSN 522
                        S  N +N+  L+ G N+     P       T +  L L   
Sbjct: 344 -----------VSSLANLTNINWLSAGHNQISDLTPL---ANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 68.1 bits (165), Expect = 1e-12
 Identities = 60/361 (16%), Positives = 120/361 (33%), Gaps = 31/361 (8%)

Query: 198 NLTSLRHLDLSANKFNSTTAGWLSKFNHLEFLSLSSNGLQGTISSIGLENLTSIKTIDLS 257
           +L  +  L        S     +   N+L  ++ S+N L        L+NLT +  I ++
Sbjct: 42  DLDQVTTLQADRLGIKSIDG--VEYLNNLTQINFSNNQLTDITP---LKNLTKLVDILMN 96

Query: 258 LNFELGGPIPTSFVRLCELTSIDVSDVKLSQDLSQVLDILSACGASALESLVFSSSQISG 317
            N         +   L  LT  +     +    +          ++ +  +   S   S 
Sbjct: 97  NNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSL 156

Query: 318 HLTSQLGQFKSLRTLSL-------DDNCISGPLPPALGDLSSLTRLDLSRNMLNGSIPLS 370
              S   Q   L+ L+        D +         L  L++L  L  + N ++   PL 
Sbjct: 157 QQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLG 216

Query: 371 LGKISHLEYLDLSNNKMNGTLSEIHFVNLTKLTWFSASGNSLILQVNPNWVPPFQLKTLL 430
           +  +++L+ L L+ N++    +     +LT LT    + N   +          +L  L 
Sbjct: 217 I--LTNLDELSLNGNQLKDIGT---LASLTNLTDLDLANNQ--ISNLAPLSGLTKLTELK 269

Query: 431 LMSCHLGPQFPSWLHSQKNLSVLDISNARISDTIPRWFWNSIF-----QLSGIIPESFKN 485
           L +  +    P    +      L+ +       I      +        +S I P    +
Sbjct: 270 LGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP--VSS 327

Query: 486 FSNLEVLNLGDNEFVGKIPTWMGEGFTSLLILILRSNKFDGFLPIQLCRLTSLQILDVAN 545
            + L+ L   +N+      + +    T++  L    N+     P  L  LT +  L + +
Sbjct: 328 LTKLQRLFFANNKVSD--VSSLA-NLTNINWLSAGHNQISDLTP--LANLTRITQLGLND 382

Query: 546 N 546
            
Sbjct: 383 Q 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 61.2 bits (147), Expect = 2e-10
 Identities = 69/370 (18%), Positives = 120/370 (32%), Gaps = 35/370 (9%)

Query: 198 NLTSLRHLDLSANKFNSTTAGWLSKFNHLEFLSLSSNGLQGTISSI-GLENLTSIKTIDL 256
            L       L       T +   +  + +  L     G    I SI G+E L ++  I+ 
Sbjct: 20  ALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLG----IKSIDGVEYLNNLTQINF 73

Query: 257 SLNFELGGPIPTSFVRLCELTSIDVSDVKLSQ-------DLSQVLDILSACGASALESLV 309
           S N +L    P     L +L  I +++ +++             L + +           
Sbjct: 74  SNN-QLTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKN 130

Query: 310 FSSSQISGHLTSQLGQFKSLRTLSLDDNCISGPLPPALGDLSSLTRLDLSRNMLN-GSIP 368
            ++       ++ +    +L  L+       G     L  L++LT L+      N  S  
Sbjct: 131 LTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDI 190

Query: 369 LSLGKISHLEYLDLSNNKMNGTLSEIHFVNLTKLTWFSASGNSLILQVNPNWVPPFQLKT 428
             L K+++LE L  +NN+++         NL +L+        +             L  
Sbjct: 191 SVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDI-----GTLASLTNLTD 245

Query: 429 LLLMSCHLGPQFPSWLHSQKNLSVLDISNARISDTIP-----RWFWNSIFQLSGIIPESF 483
           L L +  +    P  L     L+ L +   +IS+  P           + +         
Sbjct: 246 LDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPI 303

Query: 484 KNFSNLEVLNLGDNEFVGKIPTWMGEGFTSLLILILRSNKFDGFLPIQLCRLTSLQILDV 543
            N  NL  L L  N      P       T L  L   +NK        L  LT++  L  
Sbjct: 304 SNLKNLTYLTLYFNNISDISPV---SSLTKLQRLFFANNKVSD--VSSLANLTNINWLSA 358

Query: 544 ANNSLSGTMP 553
            +N +S   P
Sbjct: 359 GHNQISDLTP 368

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 53.9 bits (128), Expect = 3e-08
 Identities = 29/135 (21%), Positives = 49/135 (36%), Gaps = 17/135 (12%)

Query: 76  HVLQLSLRNPFRNDLRYATTEYEDYMRSMLSGNVNPSLVDLKHLTHLDLSGNDFQGIRIP 135
             L+L              T   +   +         + +LK+LT+L L  N+   I  P
Sbjct: 266 TELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDI-SP 324

Query: 136 KYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRCLDLSWSEYALQVHSFSWLSGQIPNR 195
             + SL  L+ L  +  + +      L NL+N+  L    ++          +S   P  
Sbjct: 325 --VSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQ----------ISDLTP-- 368

Query: 196 LGNLTSLRHLDLSAN 210
           L NLT +  L L+  
Sbjct: 369 LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 51.2 bits (121), Expect = 3e-07
 Identities = 29/130 (22%), Positives = 52/130 (40%), Gaps = 16/130 (12%)

Query: 105 LSGNVNPSLVDLKHLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGN 164
           L  N   ++  L  LT L     +   +     + +LKNL YL L     + I P  + +
Sbjct: 270 LGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP--VSS 327

Query: 165 LSNLRCLDLSWSEYALQVHSFSWLSGQIPNRLGNLTSLRHLDLSANKFNSTTAGWLSKFN 224
           L+ L+ L  + ++          +S    + L NLT++  L    N+ +  T   L+   
Sbjct: 328 LTKLQRLFFANNK----------VSD--VSSLANLTNINWLSAGHNQISDLTP--LANLT 373

Query: 225 HLEFLSLSSN 234
            +  L L+  
Sbjct: 374 RITQLGLNDQ 383

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 72.0 bits (175), Expect = 3e-14
 Identities = 44/230 (19%), Positives = 78/230 (33%), Gaps = 10/230 (4%)

Query: 327 KSLRTLSLDDNCISGPLPPALGDLSSLTRLDLSRNMLNGSIPLSLGKISHLEYLDLSNNK 386
                L L +N I+        +L +L  L L  N ++   P +   +  LE L LS N+
Sbjct: 31  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 90

Query: 387 MNGTLSEIHFVNLTKLTWFSASGNSLILQVNPNWVPPFQLKTLLLMSCHLGPQFPSWLHS 446
           +   L E     L +L         +   V  N +    +  L                 
Sbjct: 91  LK-ELPEKMPKTLQELRVHENEITKVRKSV-FNGLNQMIVVELGTNPLKSSGIENGAFQG 148

Query: 447 QKNLSVLDISNARISDTIPRWFWN------SIFQLSGIIPESFKNFSNLEVLNLGDNEFV 500
            K LS + I++  I+        +         +++ +   S K  +NL  L L  N   
Sbjct: 149 MKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSIS 208

Query: 501 GKIPTWMGEGFTSLLILILRSNKFDGFLPIQLCRLTSLQILDVANNSLSG 550
                 +    T  L  +  +N     +P  L     +Q++ + NN++S 
Sbjct: 209 AVDNGSL--ANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISA 256

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 70.8 bits (172), Expect = 8e-14
 Identities = 46/267 (17%), Positives = 84/267 (31%), Gaps = 31/267 (11%)

Query: 117 KHLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRCLDLS-- 174
                LDL  N    I       +LKNL  L L   + + I P     L  L  L LS  
Sbjct: 31  PDTALLDLQNNKITEI-KDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN 89

Query: 175 ---------WSEYALQVHSFSWLSGQIPNRLGNLTSLRHLDLSANKFNSTT--AGWLSKF 223
                               + ++    +    L  +  ++L  N   S+    G     
Sbjct: 90  QLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGM 149

Query: 224 NHLEFLSLSSNGLQGTISSIGLENLTSIKTIDLSLNFELGGPIPTSFVRLCELTSIDVSD 283
             L ++ ++   +    ++I      S+  + L  N ++      S   L  L  + +S 
Sbjct: 150 KKLSYIRIADTNI----TTIPQGLPPSLTELHLDGN-KITKVDAASLKGLNNLAKLGLSF 204

Query: 284 VKLSQDLSQVLDILSACGASALESLVFSSSQISGHLTSQLGQFKSLRTLSLDDNCISG-- 341
             +S       D  S      L  L  +++++           K ++ + L +N IS   
Sbjct: 205 NSISAV-----DNGSLANTPHLRELHLNNNKLVKVPGGL-ADHKYIQVVYLHNNNISAIG 258

Query: 342 ----PLPPALGDLSSLTRLDLSRNMLN 364
                 P      +S + + L  N + 
Sbjct: 259 SNDFCPPGYNTKKASYSGVSLFSNPVQ 285

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 70.5 bits (171), Expect = 1e-13
 Identities = 67/377 (17%), Positives = 112/377 (29%), Gaps = 82/377 (21%)

Query: 118 HLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRCLDLSWSE 177
           HL  +  S    +  ++PK L    +   L+L   +   I      NL NL  L L  + 
Sbjct: 11  HLRVVQCSDLGLE--KVPKDLPP--DTALLDLQNNKITEIKDGDFKNLKNLHTLILINN- 65

Query: 178 YALQVHSFSWLSGQIPNRLGNLTSLRHLDLSANKFNSTTAGWLSKFNHLEFLSLSSNGLQ 237
                     +S   P     L  L  L LS N+              L       N + 
Sbjct: 66  ---------KISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRV---HENEIT 113

Query: 238 GTISSIGLENLTSIKTIDLSLNFELGGPIPTSFVRLCELTSIDVSDVKLSQDLSQVLDIL 297
               S+       I     +   +  G    +F  + +L+ I ++D  ++          
Sbjct: 114 KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT---------- 163

Query: 298 SACGASALESLVFSSSQISGHLTSQLGQFKSLRTLSLDDNCISGPLPPALGDLSSLTRLD 357
                                 T   G   SL  L LD N I+     +L  L++L +L 
Sbjct: 164 ----------------------TIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLG 201

Query: 358 LSRNMLNGSIPLSLGKISHLEYLDLSNNKMNGTLSEIHFVNLTKLTWFSASGNSLILQVN 417
           LS N ++     SL    HL  L L+NNK+      +   +   +       N++   + 
Sbjct: 202 LSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLA--DHKYIQVVYLHNNNIS-AIG 258

Query: 418 PNWVPPFQLKTLLLMSCHLGPQFPSWLHSQKNLSVLDISNARISDTIPRWFWNSIFQLSG 477
            N   P    T                    + S + + +  +             Q   
Sbjct: 259 SNDFCPPGYNTKKA-----------------SYSGVSLFSNPV-------------QYWE 288

Query: 478 IIPESFKNFSNLEVLNL 494
           I P +F+       + L
Sbjct: 289 IQPSTFRCVYVRAAVQL 305

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 63.1 bits (152), Expect = 2e-11
 Identities = 50/323 (15%), Positives = 85/323 (26%), Gaps = 74/323 (22%)

Query: 351 SSLTRLDLSRNMLNGSIPLSLGKISHLEYLDLSNNKMNGTLSEIHFVNLTKLTWFSASGN 410
                LDL  N +          + +L  L L NNK++       F  L KL     S N
Sbjct: 31  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGA-FAPLVKLERLYLSKN 89

Query: 411 SLILQVNPNWVPPFQLKTLLLMSCHLGPQFPSWLHSQKNLSVLDISNARISDTIPRWFWN 470
            L            +L+        +     + L+    +                    
Sbjct: 90  QLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVV----------------ELGT 133

Query: 471 SIFQLSGIIPESFKNFSNLEVLNLGDNEFVGKIPTWMGEGFTSLLILILRSNKFDGFLPI 530
           +  + SGI   +F+    L  + + D      I T       SL  L L  NK       
Sbjct: 134 NPLKSSGIENGAFQGMKKLSYIRIADT----NITTIPQGLPPSLTELHLDGNKITKVDAA 189

Query: 531 QLCRLTSLQILDVANNSLSGTMPGCVNNFSAMATIDSSHQSNAMSYFEVTAYDCEVLEDA 590
            L  L +L  L ++ NS+S    G + N   +  +  ++                     
Sbjct: 190 SLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVK---------------- 233

Query: 591 SIVMKGSMVEYNSILNLVRIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTG------ 644
                                          +P  L   + +Q + L +N  +       
Sbjct: 234 -------------------------------VPGGLADHKYIQVVYLHNNNISAIGSNDF 262

Query: 645 QIPENIGNLISIESLDFSTNQLS 667
             P       S   +   +N + 
Sbjct: 263 CPPGYNTKKASYSGVSLFSNPVQ 285

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 60.4 bits (145), Expect = 2e-10
 Identities = 45/229 (19%), Positives = 84/229 (36%), Gaps = 7/229 (3%)

Query: 487 SNLEVLNLGDNEFVGKIPTWMGEGFTSLLILILRSNKFDGFLPIQLCRLTSLQILDVANN 546
            +  +L+L +N+              +L  LIL +NK     P     L  L+ L ++ N
Sbjct: 31  PDTALLDLQNNKITEIKDGDFK-NLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN 89

Query: 547 SLSGTMPGCVNNFSAMATIDSSHQSNAMSYFEVTAYDCEVLEDASIVMKGSMVEYNSILN 606
            L             +   ++       S F        V+E  +  +K S +E  +   
Sbjct: 90  QLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQ-MIVVELGTNPLKSSGIENGAFQG 148

Query: 607 L--VRIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQIPENIGNLISIESLDFSTN 664
           +  +  I ++  N +  IP  L     L  L+L  N  T     ++  L ++  L  S N
Sbjct: 149 MKKLSYIRIADTNIT-TIPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFN 205

Query: 665 QLSSKISQSMSSLSFLNHLNVSNNLLTGKIPSSTQLQSFDASCFVGNNL 713
            +S+  + S+++   L  L+++NN L          +         NN+
Sbjct: 206 SISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNI 254

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 55.8 bits (133), Expect = 6e-09
 Identities = 38/248 (15%), Positives = 73/248 (29%), Gaps = 34/248 (13%)

Query: 474 QLSGIIPESFKNFSNLEVLNLGDNEFVGKIPTWMGEGFTSLLILILRSNKFDGFLPIQLC 533
           +++ I    FKN  NL  L L +N+     P         L  L L  N+          
Sbjct: 42  KITEIKDGDFKNLKNLHTLILINNKISKISPGAFA-PLVKLERLYLSKNQLKELPEKMPK 100

Query: 534 RLTSLQILDVANNSLSGTMPGCVNNFSAMATIDSSHQSNAMSYFEVTAY-DCEVLEDASI 592
            L  L++     N ++       N  + M  ++        S  E  A+   + L    I
Sbjct: 101 TLQELRVH---ENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRI 157

Query: 593 VMKGSMVEYNSILNLVRIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQI------ 646
                      +   +  + +  N  +      L  L  L  L LS N  +         
Sbjct: 158 ADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLAN 217

Query: 647 -----------------PENIGNLISIESLDFSTNQLSSKISQSM------SSLSFLNHL 683
                            P  + +   I+ +    N +S+  S         +  +  + +
Sbjct: 218 TPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGV 277

Query: 684 NVSNNLLT 691
           ++ +N + 
Sbjct: 278 SLFSNPVQ 285

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 44.6 bits (104), Expect = 2e-05
 Identities = 18/119 (15%), Positives = 36/119 (30%)

Query: 603 SILNLVRIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQIPENIGNLISIESLDFS 662
            +     ++D+  N  +     +   L+ L +L L +N  +   P     L+ +E L  S
Sbjct: 28  DLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 87

Query: 663 TNQLSSKISQSMSSLSFLNHLNVSNNLLTGKIPSSTQLQSFDASCFVGNNLCGPPLPSC 721
            NQL     +   +L  L         +   + +                  G    + 
Sbjct: 88  KNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAF 146

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 40.8 bits (94), Expect = 4e-04
 Identities = 32/148 (21%), Positives = 50/148 (33%), Gaps = 19/148 (12%)

Query: 116 LKHLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRCLDLSW 175
              LT L L GN          L  L NL  L LS    + +    L N  +LR L L+ 
Sbjct: 170 PPSLTELHLDGNKITK-VDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNN 228

Query: 176 SEYALQVHSFSWLSGQIPNRLGNLTSLRHLDLSANKFNS------TTAGWLSKFNHLEFL 229
                          ++P  L +   ++ + L  N  ++         G+ +K      +
Sbjct: 229 -----------NKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGV 277

Query: 230 SLSSNGLQ-GTISSIGLENLTSIKTIDL 256
           SL SN +Q   I       +     + L
Sbjct: 278 SLFSNPVQYWEIQPSTFRCVYVRAAVQL 305

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.6 bits (155), Expect = 2e-11
 Identities = 44/442 (9%), Positives = 101/442 (22%), Gaps = 49/442 (11%)

Query: 305 LESLVFSSSQIS-GHLTSQLGQFKSLRTLSLDDNCISG----PLPPALGDLSSLTRLDLS 359
           ++SL     ++S       L   +  + + LDD  ++      +  AL    +L  L+L 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 360 RNMLNGSIPLSLGKI-----SHLEYLDLSNNKMNGTLSEIHFVNLTKLTWFSASGNSLIL 414
            N L       + +        ++ L L N  + G    +    L  L        S  L
Sbjct: 64  SNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL 123

Query: 415 QVNPNWVPPFQLKTLLLMSCHLGPQFPSWLHSQKNLSVLDISNARISDTIPRWFWNSIFQ 474
             +       +                  L +     +  +  A+          N I +
Sbjct: 124 LGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINE 183

Query: 475 LSGIIPESFKNFSNLEVLNLGD------------------------------NEFVGKIP 504
               +       S  ++  L                                N+      
Sbjct: 184 AGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGM 243

Query: 505 TWMGEGFTSLLILILRSNKFDGFLPIQLCRLTSLQILDVANNSLSGTMPGCVNNFSAMAT 564
             +  G       +     ++  +  + C      +    +          + +  A   
Sbjct: 244 AELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLL 303

Query: 565 IDSSHQSNAMSYFEVTAYDCEVLEDASIVMKGSMVEYNSILNLVRIIDVSKNNFSGEIPM 624
            ++  +                    S            +   +    +           
Sbjct: 304 CETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQG 363

Query: 625 ELTYLRGLQSLNLSHNIFTGQ----IPENIGNLISIESLDFSTNQLSSKISQSMSS---- 676
                  L+ L L+    +      +   +    S+  LD S N L       +      
Sbjct: 364 LGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQ 423

Query: 677 -LSFLNHLNVSNNLLTGKIPSS 697
               L  L + +   + ++   
Sbjct: 424 PGCLLEQLVLYDIYWSEEMEDR 445

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.6 bits (116), Expect = 9e-07
 Identities = 15/94 (15%), Positives = 28/94 (29%), Gaps = 9/94 (9%)

Query: 119 LTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLS----GAEFAGIIPHQLGNLSNLRCLDLS 174
           +  LD+   +    R  + L  L+  + + L            I   L     L  L+L 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 175 WSEYALQVHSFSWLSGQIPNRLGNLTSLRHLDLS 208
            +E  L       +   +         ++ L L 
Sbjct: 64  SNE--LGDVGVHCVLQGLQT---PSCKIQKLSLQ 92

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.0 bits (104), Expect = 2e-05
 Identities = 48/469 (10%), Positives = 115/469 (24%), Gaps = 32/469 (6%)

Query: 226 LEFLSLSSNGLQGTISSIGLENLTSIKTIDLS---LNFELGGPIPTSFVRLCELTSIDVS 282
           ++ L +    L     +  L  L   + + L    L       I ++      L  +++ 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 283 DVKLSQDLSQVLDILSACGASALESLVFSSSQISGHLTSQLGQFKSLRTLSLDDNCISGP 342
             +L       +       +  ++ L   +  ++G     L         +L        
Sbjct: 64  SNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLR----TLPTLQELHL 119

Query: 343 LPPALGDLSSLTRLDLSRNMLNGSIPLSLGKISHLEYLDLSNNKMNGTLSEIHFVNLTKL 402
               LGD       +   +       L L   S           +     +   + ++  
Sbjct: 120 SDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNN 179

Query: 403 TWFSASGNSLILQVNPNWVPPFQLKTLLLMSCHLGPQFPSWLHSQKNLSVLDISNARISD 462
               A    L   +  +      LK           +    + + K              
Sbjct: 180 DINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKA------------S 227

Query: 463 TIPRWFWNSIFQLSGIIPESFKNFSNLEVLNLGDNEFVGKIPTWMGEGFTSLLILILRSN 522
                  ++     G+             L        G      G+    L        
Sbjct: 228 LRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKE 287

Query: 523 KFDGFLPIQLCRLTSLQILDVANNSLSGTMPGCVN-NFSAMATIDSSHQSNAMSYFEVTA 581
                  +       L    +       ++        +A  +  SS  +      E+  
Sbjct: 288 LSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQI 347

Query: 582 YDCEVLEDASIVMKGSMVEYNSILNLVRIIDVSKNNFSGE----IPMELTYLRGLQSLNL 637
            +  + +     +   + +  S+L   R++ ++  + S      +   L     L+ L+L
Sbjct: 348 SNNRLEDAGVRELCQGLGQPGSVL---RVLWLADCDVSDSSCSSLAATLLANHSLRELDL 404

Query: 638 SHNIFTGQIPENIGNLI-----SIESLDFSTNQLSSKISQSMSSLSFLN 681
           S+N         +   +      +E L       S ++   + +L    
Sbjct: 405 SNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDK 453

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.0 bits (99), Expect = 1e-04
 Identities = 14/93 (15%), Positives = 29/93 (31%), Gaps = 6/93 (6%)

Query: 605 LNLVRIIDVSKNNFSGEIPMEL-TYLRGLQSLNLSHNIFTGQ----IPENIGNLISIESL 659
           L++ + +D+     S     EL   L+  Q + L     T      I   +    ++  L
Sbjct: 2   LDI-QSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAEL 60

Query: 660 DFSTNQLSSKISQSMSSLSFLNHLNVSNNLLTG 692
           +  +N+L       +          +    L  
Sbjct: 61  NLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQN 93

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.4 bits (87), Expect = 0.003
 Identities = 12/80 (15%), Positives = 18/80 (22%), Gaps = 8/80 (10%)

Query: 116 LKHLTHLDLSGNDFQGI---RIPKYLGSLKNLRYLNLSGAEFAGIIPHQLG-----NLSN 167
           L+    + L            I   L     L  LNL   E   +  H +          
Sbjct: 26  LQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCK 85

Query: 168 LRCLDLSWSEYALQVHSFSW 187
           ++ L L              
Sbjct: 86  IQKLSLQNCCLTGAGCGVLS 105

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.8 bits (151), Expect = 3e-11
 Identities = 39/213 (18%), Positives = 62/213 (29%), Gaps = 10/213 (4%)

Query: 318 HLTSQLGQFKSLRTLSLDDNCISGPLPPALGDLSSLTRLDLSRNMLNGSIPLSLGKISHL 377
           H   ++ +  S   ++ D   ++  LPP L      T L LS N+L      +L   + L
Sbjct: 1   HPICEVSKVASHLEVNCDKRNLTA-LPPDLP--KDTTILHLSENLLYTFSLATLMPYTRL 57

Query: 378 EYLDLSNNKMNGTLSEIHFVNLTKLTWFSASGNSLILQVNPNWVPPFQLK-----TLLLM 432
             L+L   ++     +     L  L        SL L                  T L +
Sbjct: 58  TQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPL 117

Query: 433 SCHLGPQFPSWLHSQKNLSVLDISNARISDTIPRWFWNSIFQLSGIIPESFKNFSNLEVL 492
               G      L+ + N                     +   L+ +         NL+ L
Sbjct: 118 GALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTL 177

Query: 493 NLGDNEFVGKIPTWMGEGFTSLLILILRSNKFD 525
            L +N     IP     G   L    L  N + 
Sbjct: 178 LLQENSLY-TIPKGFF-GSHLLPFAFLHGNPWL 208

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.4 bits (111), Expect = 3e-06
 Identities = 36/195 (18%), Positives = 62/195 (31%), Gaps = 13/195 (6%)

Query: 191 QIPNRLGNLTSLRHLDLSANKFNSTTAGWLSKFNHLEFLSLSSNGLQGTISSIGLENLTS 250
            +P  L        L LS N   + +   L  +  L  L+L    L        L  L +
Sbjct: 24  ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGT 81

Query: 251 IKTIDLSLNFELGGPIPTSFVRLCELTSIDVSDVKLSQDLSQVLDILSACGASALESLVF 310
           +      L            + + +++   ++           L + +  G   L+ L  
Sbjct: 82  LDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTS----------LPLGALRGLGELQELYL 131

Query: 311 SSSQISGHLTSQLGQFKSLRTLSLDDNCISGPLPPALGDLSSLTRLDLSRNMLNGSIPLS 370
             +++       L     L  LSL +N ++      L  L +L  L L  N L  +IP  
Sbjct: 132 KGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKG 190

Query: 371 LGKISHLEYLDLSNN 385
                 L +  L  N
Sbjct: 191 FFGSHLLPFAFLHGN 205

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.4 bits (98), Expect = 1e-04
 Identities = 38/178 (21%), Positives = 55/178 (30%), Gaps = 15/178 (8%)

Query: 117 KHLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRCLDLSWS 176
           K  T L LS N          L     L  LNL  AE   +       +     L  +  
Sbjct: 31  KDTTILHLSENLLYTF-SLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQL 89

Query: 177 EYALQVHSFSWLSGQIPNRLGNLTSLRHLDL-----------SANKFNSTTAGWLSKFNH 225
           +    +         +      LTSL    L             N+  +   G L+    
Sbjct: 90  QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPK 149

Query: 226 LEFLSLSSNGLQGTISSIGLENLTSIKTIDLSLNFELGGPIPTSFVRLCELTSIDVSD 283
           LE LSL++N L    + + L  L ++ T+ L  N      IP  F     L    +  
Sbjct: 150 LEKLSLANNNLTELPAGL-LNGLENLDTLLLQEN--SLYTIPKGFFGSHLLPFAFLHG 204

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.7 bits (91), Expect = 9e-04
 Identities = 11/60 (18%), Positives = 20/60 (33%), Gaps = 4/60 (6%)

Query: 119 LTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRCLDLSWSEY 178
              ++    +     +P  L   K+   L+LS           L   + L  L+L  +E 
Sbjct: 12  HLEVNCDKRNLT--ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAEL 67

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.3 bits (139), Expect = 1e-09
 Identities = 47/285 (16%), Positives = 86/285 (30%), Gaps = 30/285 (10%)

Query: 120 THLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRCLDLSWSEYA 179
                     Q   +P  + +    + + L G   + +         NL  L L  +  A
Sbjct: 14  VTTSCPQQGLQ--AVPVGIPA--ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA 69

Query: 180 LQVHSFSW---------------LSGQIPNRLGNLTSLRHLDLSANKFNSTTAGWLSKFN 224
               +                  L    P     L  L  L L          G      
Sbjct: 70  RIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLA 129

Query: 225 HLEFLSLSSNGLQGTISSIGLENLTSIKTIDLSLNFELGGPIPTSFVRLCELTSIDVSDV 284
            L++L L  N LQ         +L ++  + L  N  +      +F  L  L  + +   
Sbjct: 130 ALQYLYLQDNALQALPDDT-FRDLGNLTHLFLHGN-RISSVPERAFRGLHSLDRLLLHQN 187

Query: 285 KLSQDLSQVLDILSACGASALESLVFSSSQISGHLTSQLGQFKSLRTLSLDDNCISGPLP 344
           +++         L         +L   ++ +S   T  L   ++L+ L L+DN       
Sbjct: 188 RVAHVHPHAFRDLGRL-----MTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCD-C 241

Query: 345 PALGDLSSLTRLDLSRNMLNGSIPLSLGKISHLEYLDLSNNKMNG 389
            A    + L +   S + +  S+P  L   +  +   L+ N + G
Sbjct: 242 RARPLWAWLQKFRGSSSEVPCSLPQRL---AGRDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.6 bits (132), Expect = 6e-09
 Identities = 48/237 (20%), Positives = 82/237 (34%), Gaps = 11/237 (4%)

Query: 326 FKSLRTLSLDDNCISGPLPPALGDLSSLTRLDLSRNMLNGSIPLSLGKISHLEYLDLSNN 385
             + + + L  N IS     +     +LT L L  N+L      +   ++ LE LDLS+N
Sbjct: 31  PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90

Query: 386 KMNGTLSEIHFVNLTKLTWFSASGNSLILQVNPNWVPPFQLKTLLLMSCHLGPQFPSWLH 445
               ++    F  L +L         L       +     L+ L L    L         
Sbjct: 91  AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFR 150

Query: 446 SQKNLSVLDISNARISDTIPRWFWN---------SIFQLSGIIPESFKNFSNLEVLNLGD 496
              NL+ L +   RIS    R F              +++ + P +F++   L  L L  
Sbjct: 151 DLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFA 210

Query: 497 NEFVGKIPTWMGEGFTSLLILILRSNKFDGFLPIQLCRLTSLQILDVANNSLSGTMP 553
           N     +PT       +L  L L  N +      +      LQ    +++ +  ++P
Sbjct: 211 NNL-SALPTEALAPLRALQYLRLNDNPWVCDCRARP-LWAWLQKFRGSSSEVPCSLP 265

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.4 bits (116), Expect = 7e-07
 Identities = 33/232 (14%), Positives = 72/232 (31%), Gaps = 3/232 (1%)

Query: 474 QLSGIIPESFKNFSNLEVLNLGDNEFVGKIPTWMGEGFTSLLILILRSNKFDGFLPIQLC 533
           ++S +   SF+   NL +L L  N                  + +  + +     P    
Sbjct: 43  RISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFH 102

Query: 534 RLTSLQILDVANNSLSGTMPGCVNNFSAMATIDSSHQSNAMSYFEVTAYDCEVLEDASIV 593
            L  L  L +    L    PG     +A+  +     +      +       +       
Sbjct: 103 GLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHG 162

Query: 594 MKGSMVEYNSILNL--VRIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQIPENIG 651
            + S V   +   L  +  + + +N  +   P     L  L +L L  N  +    E + 
Sbjct: 163 NRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALA 222

Query: 652 NLISIESLDFSTNQLSSKISQSMSSLSFLNHLNVSNNLLTGKIPSSTQLQSF 703
            L +++ L  + N       ++    ++L     S++ +   +P     +  
Sbjct: 223 PLRALQYLRLNDNPWVCDC-RARPLWAWLQKFRGSSSEVPCSLPQRLAGRDL 273

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.7 bits (109), Expect = 4e-06
 Identities = 44/238 (18%), Positives = 71/238 (29%), Gaps = 32/238 (13%)

Query: 200 TSLRHLDLSANKFNSTTAGWLSKFNHLEFLSLSSNGLQGTISSIGLENLTSIKTIDLSLN 259
            + + + L  N+ +   A       +L  L L SN L    ++         +       
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91

Query: 260 FELGGPIPTSFVRLCELTSIDVSDVKLSQDLSQVLDILSACGASALESLVFSSSQISGHL 319
             L    P +F  L  L ++      L +   Q L      G +AL+ L    + +    
Sbjct: 92  Q-LRSVDPATFHGLGRLHTLH-----LDRCGLQELGPGLFRGLAALQYLYLQDNALQALP 145

Query: 320 TSQLGQFKSLRTLSLDDNCISGPLPPALGDLSSLTRLDLSRNMLNGSIPLSL-------- 371
                   +L  L L  N IS     A   L SL RL L +N +    P +         
Sbjct: 146 DDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMT 205

Query: 372 ----------------GKISHLEYLDLSNNKMNGTLSEIHFVNLTKLTWFSASGNSLI 413
                             +  L+YL L++N                L  F  S + + 
Sbjct: 206 LYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPL--WAWLQKFRGSSSEVP 261

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 56.8 bits (135), Expect = 4e-09
 Identities = 54/343 (15%), Positives = 91/343 (26%), Gaps = 43/343 (12%)

Query: 351 SSLTRLDLSRNMLNGSIPLSLGKISHLEYLDLSNNKMNGTLSEIHFVNLTKLTWFSASGN 410
                L+L+   L+ S+P       HLE L  S N            +LT+L     S  
Sbjct: 38  RQAHELELNNLGLS-SLPELPP---HLESLVASCN------------SLTELPELPQSLK 81

Query: 411 SLILQVNPNWVPPFQLKTLLLMSCHLGPQFPSWLHSQ-KNLSVLDISNARISDTIPRWFW 469
           SL++  N           L  +                  L ++D+ N  +         
Sbjct: 82  SLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPS 141

Query: 470 NSIFQLSGIIPESFKNFSNLEVLNLGDNEFVGKIPTWMGEGFTSLLILILRSNKFDGFLP 529
                      E      NL  L     +                    + +        
Sbjct: 142 LEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLE----SIVAGNNILEEL 197

Query: 530 IQLCRLTSLQILDVANNSLSGTMPGCVNNFSAMATIDSSHQSNAMSYFEVTAYDCEVLED 589
            +L  L  L  +   NN L        +  +     +       +          E +  
Sbjct: 198 PELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFS 257

Query: 590 ASIVMKGSMVEYNSILNLVRIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQIPEN 649
               +  ++   N+  N              EI         L+ LN+S+N    ++P  
Sbjct: 258 GLSELPPNLYYLNASSN--------------EIRSLCDLPPSLEELNVSNNKLI-ELPAL 302

Query: 650 IGNLISIESLDFSTNQLSSKISQSMSSLSFLNHLNVSNNLLTG 692
              L   E L  S N L+  + +   +L     L+V  N L  
Sbjct: 303 PPRL---ERLIASFNHLAE-VPELPQNLK---QLHVEYNPLRE 338

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 41.3 bits (95), Expect = 3e-04
 Identities = 18/80 (22%), Positives = 30/80 (37%), Gaps = 8/80 (10%)

Query: 310 FSSSQISGHLTSQLGQFKSLRTLSLDDNCISGPLPPALGDLSSLTRLDLSRNMLNGSIPL 369
           +  +  S  + S      SL  L++ +N +   LP        L RL  S N L   +P 
Sbjct: 267 YYLNASSNEIRSLCDLPPSLEELNVSNNKLIE-LPALPP---RLERLIASFNHLA-EVPE 321

Query: 370 SLGKISHLEYLDLSNNKMNG 389
                 +L+ L +  N +  
Sbjct: 322 LPQ---NLKQLHVEYNPLRE 338

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 38.7 bits (88), Expect = 0.002
 Identities = 48/309 (15%), Positives = 82/309 (26%), Gaps = 18/309 (5%)

Query: 105 LSGNVNPSLVD-LKHLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLG 163
           L+     SL +   HL  L  S N      +P+   SLK+L   N +    + + P    
Sbjct: 45  LNNLGLSSLPELPPHLESLVASCNSLT--ELPELPQSLKSLLVDNNNLKALSDLPPLLEY 102

Query: 164 NLSNLRCLDLSWSEYALQVHSFSWLSGQIPNRLGNLTSLRHLDLSANKFNSTTAGWLSKF 223
              +   L+               +         +L  L  L  S     +         
Sbjct: 103 LGVSNNQLEKLPELQNSSFLKIIDVDNN------SLKKLPDLPPSLEFIAAGNNQLEELP 156

Query: 224 NHLEFLSLSSNGLQGTISSIGLENLTSIKTIDLSLNFELGGPIPTSFVRLCELTSIDVSD 283
                  L++            +   S+++I    N     P   +   L  + + +   
Sbjct: 157 ELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLL 216

Query: 284 VKLSQDLSQVLDILSACGASALESLVFSSSQISGHLTSQLGQFKSLRTLSLDDNCISGPL 343
             L      +  +            +  S        +       L       N  S  +
Sbjct: 217 KTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEI 276

Query: 344 PPALGDLSSLTRLDLSRNMLNGSIPLSLGKISHLEYLDLSNNKMNGTLSEIHFVNLTKLT 403
                   SL  L++S N L   +P    +   LE L  S N     L+E+       L 
Sbjct: 277 RSLCDLPPSLEELNVSNNKLI-ELPALPPR---LERLIASFNH----LAEVPE-LPQNLK 327

Query: 404 WFSASGNSL 412
                 N L
Sbjct: 328 QLHVEYNPL 336

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 51.2 bits (121), Expect = 1e-07
 Identities = 28/221 (12%), Positives = 61/221 (27%), Gaps = 11/221 (4%)

Query: 350 LSSLTRLDLSRNMLNGSIPLSLGKISHLEYLDLSNNKMNGTLSEIHFVNLTKLTWFSASG 409
           L++  ++   ++ +  ++  +   +  +  L      +  T+  +    L  L       
Sbjct: 18  LANAIKIAAGKSNVTDTVTQA--DLDGITTLSAFGTGVT-TIEGVQ--YLNNLIGLELKD 72

Query: 410 NSLILQVNPNWVPPFQLKTLLLMSCHLGPQFPSWLHSQKNLSVLDISNARISDTIPRWFW 469
           N   +          ++  L L    L                L  +       +     
Sbjct: 73  N--QITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSN 130

Query: 470 NSIFQLSGIIPESFKNFSNLEVLNLGDNEFVGKIPTWMGEGFTSLLILILRSNKFDGFLP 529
             +  L      +    + L  L                   + L  L    NK     P
Sbjct: 131 LQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP 190

Query: 530 IQLCRLTSLQILDVANNSLSGTMPGCVNNFSAMATIDSSHQ 570
             L  L +L  + + NN +S   P  + N S +  +  ++Q
Sbjct: 191 --LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQ 227

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 49.3 bits (116), Expect = 4e-07
 Identities = 36/196 (18%), Positives = 61/196 (31%), Gaps = 13/196 (6%)

Query: 196 LGNLTSLRHLDLSANKFNSTTAGWLSKFNHLEFLSLSSNGLQGTISSIGLENLTSIKTID 255
             +L  +  L        +     +   N+L  L L  N +        L  +T ++   
Sbjct: 37  QADLDGITTLSAFGTGVTTIEG--VQYLNNLIGLELKDNQITDLAPLKNLTKITELELSG 94

Query: 256 LSLNFELGGPIPTSFVRLCELTSIDVSDVKLSQDLSQVLDILSACGASALESLVF----- 310
             L          S   L   ++       L+   +  +  L     + +  L       
Sbjct: 95  NPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQ 154

Query: 311 --SSSQISGHLTSQLGQFKSLRTLSLDDNCISGPLPPALGDLSSLTRLDLSRNMLNGSIP 368
             S         + L     L TL  DDN IS      L  L +L  + L  N ++   P
Sbjct: 155 YLSIGNAQVSDLTPLANLSKLTTLKADDNKISDI--SPLASLPNLIEVHLKNNQISDVSP 212

Query: 369 LSLGKISHLEYLDLSN 384
           L+    S+L  + L+N
Sbjct: 213 LA--NTSNLFIVTLTN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 49.3 bits (116), Expect = 5e-07
 Identities = 32/221 (14%), Positives = 75/221 (33%), Gaps = 11/221 (4%)

Query: 325 QFKSLRTLSLDDNCISGPLPPALGDLSSLTRLDLSRNMLNGSIPLSLGKISHLEYLDLSN 384
              +   ++   + ++  +  A  DL  +T L      +  +I   +  +++L  L+L +
Sbjct: 17  ALANAIKIAAGKSNVTDTVTQA--DLDGITTLSAFGTGVT-TIE-GVQYLNNLIGLELKD 72

Query: 385 NKMNGTLSEIHFVNLTKLTWFSASGNSLILQVNPNWVPPFQLKTLLLMSCHLGPQFPSWL 444
           N++       +   +T+L        ++        +    L +  +          +  
Sbjct: 73  NQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQ 132

Query: 445 HSQKNLSVLDISNARISDTIPRWFWNSIFQLSGIIPESFKNFSNLEVLNLGDNEFVGKIP 504
               +  +  I+N      +    + SI            N S L  L   DN+     P
Sbjct: 133 VLYLD--LNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP 190

Query: 505 TWMGEGFTSLLILILRSNKFDGFLPIQLCRLTSLQILDVAN 545
                   +L+ + L++N+     P  L   ++L I+ + N
Sbjct: 191 L---ASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.0 bits (92), Expect = 5e-04
 Identities = 30/232 (12%), Positives = 68/232 (29%), Gaps = 19/232 (8%)

Query: 479 IPESF--KNFSNLEVLNLGDNEFVGKIPTWMGEGFTSLLILILRSNKFDGFLPIQLCRLT 536
           I   F     +N   +  G +     +          +  L            +Q   L 
Sbjct: 9   INVIFPDPALANAIKIAAGKSNVTDTVTQ---ADLDGITTLSAFGTGVTTIEGVQ--YLN 63

Query: 537 SLQILDVANNSLSGTMPGCVNNFSAMATIDSSHQSNAMSYFEVTAYDCEVLEDASIVMKG 596
           +L  L++ +N ++   P           +  +   N  +   + +     L    I    
Sbjct: 64  NLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVT 123

Query: 597 SMVEYNSILNLVRIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQIPENIGNLISI 656
            +   +++  L             +I              LS           + NL  +
Sbjct: 124 PLAGLSNLQVL--------YLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKL 175

Query: 657 ESLDFSTNQLSSKISQSMSSLSFLNHLNVSNNLLTGKIP--SSTQLQSFDAS 706
            +L    N++S      ++SL  L  +++ NN ++   P  +++ L     +
Sbjct: 176 TTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSPLANTSNLFIVTLT 225

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.5 bits (88), Expect = 0.002
 Identities = 31/220 (14%), Positives = 68/220 (30%), Gaps = 20/220 (9%)

Query: 198 NLTSLRHLDLSANKFNSTTAGWLSKFNHLEFLSLSSNGLQGTISSI-GLENLTSIKTIDL 256
            L +   +    +    T     +  + +  LS    G    +++I G++ L ++  ++L
Sbjct: 17  ALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTG----VTTIEGVQYLNNLIGLEL 70

Query: 257 SLNF--------ELGGPIPTSFVRLCELTSIDVSDVKLSQDLSQVLDILSACGASALESL 308
             N          L                  ++ ++  + L      ++     A  S 
Sbjct: 71  KDNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSN 130

Query: 309 VFSSSQISGHLTSQLGQFKSLRTLSLDDNCISGPLPPALGDLSSLTRLDLSRNMLNGSIP 368
           +         +T+            L            L +LS LT L    N ++   P
Sbjct: 131 LQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP 190

Query: 369 LSLGKISHLEYLDLSNNKMNGTLSEIHFVNLTKLTWFSAS 408
           L    + +L  + L NN+++         N + L   + +
Sbjct: 191 L--ASLPNLIEVHLKNNQISDV---SPLANTSNLFIVTLT 225

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 51.4 bits (121), Expect = 2e-07
 Identities = 45/347 (12%), Positives = 91/347 (26%), Gaps = 29/347 (8%)

Query: 325 QFKSLRTLSLDDNCISGPLPPALGDLSSLTRLDLSRNMLNG----SIPLSLGKISHLEYL 380
           + KSL+  ++        +   L +  S+  + LS N +       +  ++     LE  
Sbjct: 6   EGKSLKLDAITTEDEK-SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIA 64

Query: 381 DLSNNKMNGTLSEIHFVNLTKLTWFSASGNSLILQVNPNWVPPFQLKTLLLMSCHLGPQF 440
           + S+        EI       L           ++++ N   P   + L+       P  
Sbjct: 65  EFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLE 124

Query: 441 PSWLHSQKNLSVLDISNARISDTIPRWFWNSIFQLSGIIPESFKNFSNLEVLNLGDNEFV 500
             +LH+                        +       + +  KN   L  +  G N   
Sbjct: 125 HLYLHNNGL-------------GPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLE 171

Query: 501 GKIPTWMGEGFTSLLILILRSNKFDGFLPIQLCRLTSLQILDVANNSLSGTMPGCVNNFS 560
                   + F S  +L       +G           L         L            
Sbjct: 172 NGSMKEWAKTFQSHRLLHTVKMVQNGI--RPEGIEHLLLEGLAYCQELKVLDLQDNTFTH 229

Query: 561 AMATIDSSHQSNAMSYFEVTAYDCEVLEDASIVMKGSMVEYNSILNLVRIIDVSKNNFSG 620
             ++  +    +  +  E+   DC  L                 + L + + +  N    
Sbjct: 230 LGSSALAIALKSWPNLRELGLNDCL-LSARGAAAVVDAFSKLENIGL-QTLRLQYNEIEL 287

Query: 621 EIPMEL-----TYLRGLQSLNLSHNIFT--GQIPENIGNLISIESLD 660
           +    L       +  L  L L+ N F+    + + I  + S     
Sbjct: 288 DAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFSTRGRG 334

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 44.5 bits (103), Expect = 3e-05
 Identities = 50/308 (16%), Positives = 90/308 (29%), Gaps = 40/308 (12%)

Query: 117 KHLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLS----GAEFAGIIPHQLGNLSNLRCLD 172
           K L    ++  D + +     L    +++ + LS    G E A  +   + +  +L   +
Sbjct: 8   KSLKLDAITTEDEKSV--FAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAE 65

Query: 173 LSWSEYALQVHSFSWLSGQIPNRLGNLTSLRHLDLSANKFNSTTAGWLSKFN-------- 224
            S                 +   L     L  + LS N F  T    L  F         
Sbjct: 66  FSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEH 125

Query: 225 -----------HLEFLSLSSNGLQGTISSIGLENLTSIKTIDLSLNFELGGPIPTSFVRL 273
                          ++ +   L     +     L SI      L          +F   
Sbjct: 126 LYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSH 185

Query: 274 CELTSIDVSDVKLSQDLSQVLDILSACGASAL----ESLVFSSSQISGHLTSQLGQFKSL 329
             L ++ +    +  +  + L +        L          +   S  L   L  + +L
Sbjct: 186 RLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNL 245

Query: 330 RTLSLDDNCISGPLPPALGD------LSSLTRLDLSRNMLNGSIPLSL-----GKISHLE 378
           R L L+D  +S     A+ D         L  L L  N +      +L      K+  L 
Sbjct: 246 RELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLL 305

Query: 379 YLDLSNNK 386
           +L+L+ N+
Sbjct: 306 FLELNGNR 313

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 38.3 bits (87), Expect = 0.003
 Identities = 35/324 (10%), Positives = 74/324 (22%), Gaps = 46/324 (14%)

Query: 191 QIPNRLGNLTSLRHLDLSANKFNSTTAGWLSKFNHLEFLSLSSNGLQGTISSIGLENLTS 250
            +   L    S++ + LS N   +  A WLS+                      + +   
Sbjct: 22  SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSE---------------------NIASKKD 60

Query: 251 IKTIDLSLNF---------ELGGPIPTSFVRLCELTSIDVSDVKLSQDLSQVLDILSACG 301
           ++  + S  F         E    +  + ++  +L ++ +SD        + L    +  
Sbjct: 61  LEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKH 120

Query: 302 ASALESLVFSSSQISGHLTSQLGQFKSLRTLSLDDNCISGPLPPALGDLSSLTRLDLSRN 361
                  + ++              + L       N           +      +     
Sbjct: 121 TPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAK 180

Query: 362 MLNGSIPLSLGKISHLEYLDLSNNKMNGTLSEIHFVNLTKLTWFSASGNSLILQVNPNWV 421
                  L   K+            +                  +   +     +     
Sbjct: 181 TFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALK 240

Query: 422 PPFQLKTLLLMSCHLGPQFPSWL------HSQKNLSVLDISNARISDTIPRWFWNSIFQL 475
               L+ L L  C L  +  + +           L  L +    I     R     I   
Sbjct: 241 SWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVI--- 297

Query: 476 SGIIPESFKNFSNLEVLNLGDNEF 499
                   +   +L  L L  N F
Sbjct: 298 -------DEKMPDLLFLELNGNRF 314

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.1 bits (118), Expect = 4e-07
 Identities = 45/262 (17%), Positives = 89/262 (33%), Gaps = 15/262 (5%)

Query: 120 THLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRCLDLSWSEYA 179
             LDL+G +       + L   + +       +     +         ++ +DLS S   
Sbjct: 3   QTLDLTGKNLHPDVTGRLLS--QGVIAFRCPRSFMDQPLAEHFSPF-RVQHMDLSNS--- 56

Query: 180 LQVHSFSWLSGQIPNRLGNLTSLRHLDLSANKFNSTTAGWLSKFNHLEFLSLSSN-GLQG 238
                       +   L   + L++L L   + +      L+K ++L  L+LS   G   
Sbjct: 57  ------VIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSE 110

Query: 239 TISSIGLENLTSIKTIDLSLNFELGGPIPTSFVRLCELTSIDVSDVKLSQDLSQVLDILS 298
                 L + + +  ++LS  F+         V     T   ++     ++L +      
Sbjct: 111 FALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTL 170

Query: 299 ACGASALESLVFS-SSQISGHLTSQLGQFKSLRTLSLDD-NCISGPLPPALGDLSSLTRL 356
                 L  L  S S  +      +  Q   L+ LSL     I       LG++ +L  L
Sbjct: 171 VRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTL 230

Query: 357 DLSRNMLNGSIPLSLGKISHLE 378
            +   + +G++ L    + HL+
Sbjct: 231 QVFGIVPDGTLQLLKEALPHLQ 252

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.1 bits (105), Expect = 2e-05
 Identities = 29/195 (14%), Positives = 60/195 (30%), Gaps = 22/195 (11%)

Query: 111 PSLVDLKHLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRC 170
                   + H+DLS +  +   +   L     L+ L+L G   +  I + L   SNL  
Sbjct: 40  AEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVR 99

Query: 171 LDL----------------------SWSEYALQVHSFSWLSGQIPNRLGNLTSLRHLDLS 208
           L+L                        +       +   +   + +    +T L      
Sbjct: 100 LNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYR 159

Query: 209 ANKFNSTTAGWLSKFNHLEFLSLSSNGLQGTISSIGLENLTSIKTIDLSLNFELGGPIPT 268
            N   S  +  + +  +L  L LS + +           L  ++ + LS  +++      
Sbjct: 160 KNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLL 219

Query: 269 SFVRLCELTSIDVSD 283
               +  L ++ V  
Sbjct: 220 ELGEIPTLKTLQVFG 234

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.6 bits (101), Expect = 5e-05
 Identities = 21/191 (10%), Positives = 60/191 (31%), Gaps = 7/191 (3%)

Query: 607 LVRIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQIPENIGNLISIESLDFSTNQL 666
           L + +D++  N   ++   L   +G+ +     +     + E+      ++ +D S + +
Sbjct: 1   LWQTLDLTGKNLHPDVTGRLL-SQGVIAFRCPRSFMDQPLAEHFSPF-RVQHMDLSNSVI 58

Query: 667 SSK-ISQSMSSLSFLNHLNVSNNLLTGKIPSS----TQLQSFDASCFVGNNLCGPPLPSC 721
               +   +S  S L +L++    L+  I ++    + L   + S   G +         
Sbjct: 59  EVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLS 118

Query: 722 TENNARAPKDPNGNAEQDEDEVDWLLYVSIAVGFVVGFWCFIGPLLLNRGWRYKYCRFLD 781
           + +              ++     + +VS  +  +            +     + C  L 
Sbjct: 119 SCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLV 178

Query: 782 GCMDRFGCFVS 792
                    + 
Sbjct: 179 HLDLSDSVMLK 189

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.2 bits (87), Expect = 0.003
 Identities = 33/227 (14%), Positives = 69/227 (30%), Gaps = 11/227 (4%)

Query: 343 LPPALGDLSS--LTRLDLSRNMLNGSIPLSLGKISHLEYLDLSNNKMNGTLSEIHFVNLT 400
            P   G L S  +      R+ ++  +         ++++DLSN+ +  +         +
Sbjct: 13  HPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFR-VQHMDLSNSVIEVSTLHGILSQCS 71

Query: 401 KLTWFSASGNSLILQVNPNWVPPFQLKTLLLMSCHLGPQFPSWLHSQKNLSVLDISNARI 460
           KL   S  G  L   +         L  L L  C  G    +      + S LD  N   
Sbjct: 72  KLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCS-GFSEFALQTLLSSCSRLDELN--- 127

Query: 461 SDTIPRWFWNSIFQLSGIIPESFKNFSNLEVLNLGDNEFVGKIPTWMGEGFTSLLILILR 520
              +   F  +   +   +    +  + L +     N     + T +      + + +  
Sbjct: 128 ---LSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSD 184

Query: 521 SNKFDGFLPIQLCRLTSLQILDVAN-NSLSGTMPGCVNNFSAMATID 566
           S         +  +L  LQ L ++    +       +     + T+ 
Sbjct: 185 SVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQ 231

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 48.1 bits (113), Expect = 1e-06
 Identities = 25/174 (14%), Positives = 58/174 (33%), Gaps = 6/174 (3%)

Query: 326 FKSLRTLSLDDNCISGPLPPALGDLSSLTRLDLSRNMLNGSIPLSLGKISHLEYLDLSNN 385
                   L    ++  +     DL  +T L   R  +  SI   +  +++L  ++ SNN
Sbjct: 17  LAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIK-SID-GVEYLNNLTQINFSNN 72

Query: 386 KMNGTLSEIHFVNLTKLTWFSASGNSLILQVNPNWVPPFQLKTLLLMSCHLGPQFPSWLH 445
           ++       +   L  +   +     +    N   +    L    +          +   
Sbjct: 73  QLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNR 132

Query: 446 SQKNLSVLDISNARISDTIPRWFWNSIFQLSGIIPESFKNFSNLEVLNLGDNEF 499
            + + + +   +A    T  +    S  Q++ + P    N + LE L++  N+ 
Sbjct: 133 LELSSNTISDISALSGLTSLQQLNFSSNQVTDLKP--LANLTTLERLDISSNKV 184

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 37.0 bits (84), Expect = 0.004
 Identities = 30/192 (15%), Positives = 61/192 (31%), Gaps = 17/192 (8%)

Query: 198 NLTSLRHLDLSANKFNSTTAGWLSKFNHLEFLSLSSNGLQGTISSI-GLENLTSIKTIDL 256
            L       L       T +   +  + +  L     G    I SI G+E L ++  I+ 
Sbjct: 16  ALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLG----IKSIDGVEYLNNLTQINF 69

Query: 257 SLNFELGGPI--------PTSFVRLCELTSIDVSDVKLSQDLSQVLDILSACGASALESL 308
           S N                             ++++     L+   + ++        + 
Sbjct: 70  SNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTN 129

Query: 309 VFSSSQISGHLTSQLGQFKSLRTLSLDDNCISGPLPPALGDLSSLTRLDLSRNMLNGSIP 368
           +      S  ++             L+ +         L +L++L RLD+S N ++    
Sbjct: 130 LNRLELSSNTISDISALSGLTSLQQLNFSSNQVTDLKPLANLTTLERLDISSNKVSD--I 187

Query: 369 LSLGKISHLEYL 380
             L K+++LE L
Sbjct: 188 SVLAKLTNLESL 199

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 44.8 bits (104), Expect = 9e-06
 Identities = 36/197 (18%), Positives = 64/197 (32%), Gaps = 23/197 (11%)

Query: 352 SLTRLDLSRNMLNGSIPLSLGKISHLEYLDLSNNKMNGTLSEIHFVNLTKLTWFSASGNS 411
             T +D +   L   IP  +    H   L L++N++    S+  F  L  L       N 
Sbjct: 9   EGTTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQ 65

Query: 412 LILQVNPNWVPPFQLKTLLLMSCHLGPQFPSWLHSQKNLSVLDISNARISDTIPRWFWNS 471
           L       +     ++ L L    +             L  L++ +              
Sbjct: 66  LTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYD-------------- 111

Query: 472 IFQLSGIIPESFKNFSNLEVLNLGDNEFVGKIPTWMGEGFTSLLILILRSNKFDGFLPIQ 531
             Q+S ++P SF++ ++L  LNL  N F              L    L         P  
Sbjct: 112 -NQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAW--FAEWLRKKSLNGGAARCGAP-- 166

Query: 532 LCRLTSLQILDVANNSL 548
             ++  +QI D+ ++  
Sbjct: 167 -SKVRDVQIKDLPHSEF 182

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 42.8 bits (100), Expect = 2e-05
 Identities = 24/104 (23%), Positives = 37/104 (35%), Gaps = 23/104 (22%)

Query: 330 RTLSLDDNCISGPLPPALGDLSSLTRLDLSRNMLNGSIP--------------------- 368
           R L L    ++      L  L  +T LDLS N L    P                     
Sbjct: 1   RVLHLAHKDLTVL--CHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENV 58

Query: 369 LSLGKISHLEYLDLSNNKMNGTLSEIHFVNLTKLTWFSASGNSL 412
             +  +  L+ L L NN++  + +    V+  +L   +  GNSL
Sbjct: 59  DGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSL 102

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 41.6 bits (97), Expect = 4e-05
 Identities = 20/104 (19%), Positives = 33/104 (31%), Gaps = 17/104 (16%)

Query: 122 LDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRCLDLSWSEYA-- 179
           L L+  D   + +  +L  L  + +L+LS      + P  L  L  L  L  S +     
Sbjct: 3   LHLAHKD---LTVLCHLEQLLLVTHLDLSHNRLRALPPA-LAALRCLEVLQASDNALENV 58

Query: 180 -----------LQVHSFSWLSGQIPNRLGNLTSLRHLDLSANKF 212
                      L + +           L +   L  L+L  N  
Sbjct: 59  DGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSL 102

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 39.3 bits (91), Expect = 3e-04
 Identities = 19/107 (17%), Positives = 33/107 (30%), Gaps = 4/107 (3%)

Query: 192 IPNRLGNLTSLRHLDLSANKFNSTTAGWLSKFNHLEFLSLSSNGLQGTISSIGLENLTSI 251
           +   L  L  + HLDLS N+              L  L +         +  G+ NL  +
Sbjct: 12  VLCHLEQLLLVTHLDLSHNRLR----ALPPALAALRCLEVLQASDNALENVDGVANLPRL 67

Query: 252 KTIDLSLNFELGGPIPTSFVRLCELTSIDVSDVKLSQDLSQVLDILS 298
           + + L  N           V    L  +++    L Q+      +  
Sbjct: 68  QELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAE 114

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 37.8 bits (87), Expect = 8e-04
 Identities = 22/116 (18%), Positives = 40/116 (34%), Gaps = 24/116 (20%)

Query: 609 RIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQIP--------------------- 647
           R++ ++  + +  +   L  L  +  L+LSHN      P                     
Sbjct: 1   RVLHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENV 58

Query: 648 ENIGNLISIESLDFSTNQLSS-KISQSMSSLSFLNHLNVSNNLLTGKIPSSTQLQS 702
           + + NL  ++ L    N+L      Q + S   L  LN+  N L  +     +L  
Sbjct: 59  DGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAE 114

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 41.9 bits (97), Expect = 1e-04
 Identities = 27/204 (13%), Positives = 61/204 (29%), Gaps = 15/204 (7%)

Query: 484 KNFSNLEVLNLGDNEFVGKIPTWMGEGFTSLLILILRSNKFDGFLPIQLCRLTSLQILDV 543
             F+     NL        +         S+  +I  ++       IQ   L ++  L +
Sbjct: 21  DAFAETIKDNLKKKSVTDAVTQ---NELNSIDQIIANNSDIKSVQGIQ--YLPNVTKLFL 75

Query: 544 ANNSLSGTMPGCVNNFSAMATIDSSHQSNAMSYFEVTAYDCEVLEDASIVMKGSMVEYNS 603
             N L+          + +  +              +  D + L+  S+   G       
Sbjct: 76  NGNKLTDIK-----PLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGL 130

Query: 604 ILNLVRIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQIPENIGNLISIESLDFST 663
           +           NN   +I +     +        + I        +  L  +++L  S 
Sbjct: 131 VHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISD---IVPLAGLTKLQNLYLSK 187

Query: 664 NQLSSKISQSMSSLSFLNHLNVSN 687
           N +S    ++++ L  L+ L + +
Sbjct: 188 NHISD--LRALAGLKNLDVLELFS 209

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.5 bits (88), Expect = 0.002
 Identities = 28/196 (14%), Positives = 70/196 (35%), Gaps = 17/196 (8%)

Query: 198 NLTSLRHLDLSANKFNSTTAGWLSKFNHLEFLSLSSNGLQGTISSIGLENLTSIKTIDLS 257
                   +L             ++ N ++ +  +++ ++   S  G++ L ++  + L+
Sbjct: 22  AFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK---SVQGIQYLPNVTKLFLN 76

Query: 258 LNFELGGPIPTSFVRLCELTSIDVSDVKLSQDLSQVLDILSACGASALESLVFS------ 311
            N +L    P + ++      +D + VK    L  +  + S        S +        
Sbjct: 77  GN-KLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQ 135

Query: 312 ---SSQISGHLTSQLGQFKSLRTLSLDDNCISGPLPPALGDLSSLTRLDLSRNMLNGSIP 368
                  +  +T      +  +  +L            L  L+ L  L LS+N ++  + 
Sbjct: 136 LESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHIS-DLR 194

Query: 369 LSLGKISHLEYLDLSN 384
            +L  + +L+ L+L +
Sbjct: 195 -ALAGLKNLDVLELFS 209

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.8 bits (96), Expect = 2e-04
 Identities = 24/210 (11%), Positives = 53/210 (25%), Gaps = 13/210 (6%)

Query: 326 FKSLRTLSLDDNCISGPLPPALGDLSSLTRLDLSRNMLNGSIPLSLGKISHLEYLDLSNN 385
            ++   L      +      A      L ++++S+N +   I   +       +      
Sbjct: 28  PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 87

Query: 386 KMNGTLSEIHFVNLTKLTWFSASGNSLIL------------QVNPNWVPPFQLKTLLLMS 433
             N                +    N+ I             +V  +      + T+   S
Sbjct: 88  ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNS 147

Query: 434 CHLGPQFPSWLHSQKNLSVLDISNARISDTIPRWFWNSIFQLSGIIPESFKNFSNLEVLN 493
                     L   KN      + A     +     +    L  +  + F   S   +L+
Sbjct: 148 FVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILD 207

Query: 494 LGDNEFVGKIPTWMGEGFTSLLILILRSNK 523
           +        +P++  E    L      + K
Sbjct: 208 ISRTRIHS-LPSYGLENLKKLRARSTYNLK 236

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.6 bits (85), Expect = 0.004
 Identities = 8/52 (15%), Positives = 16/52 (30%)

Query: 183 HSFSWLSGQIPNRLGNLTSLRHLDLSANKFNSTTAGWLSKFNHLEFLSLSSN 234
              + L     +     +    LD+S  + +S  +  L     L   S  + 
Sbjct: 184 SDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNL 235

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.2 bits (92), Expect = 2e-04
 Identities = 21/138 (15%), Positives = 37/138 (26%), Gaps = 1/138 (0%)

Query: 345 PALGDLSSLTRLDLSRNMLNGSIPLSLGKISHLEYLDLSNNKMNGTLSEIHFVNLTKLTW 404
           P        + L  +R+         L    +L  L + N +    L       L +L  
Sbjct: 2   PDACCPHGSSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRN 60

Query: 405 FSASGNSLILQVNPNWVPPFQLKTLLLMSCHLGPQFPSWLHSQKNLSVLDISNARISDTI 464
            +   + L       +    +L  L L    L       +       ++   N       
Sbjct: 61  LTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLHCSCA 120

Query: 465 PRWFWNSIFQLSGIIPES 482
            RW      +  G +PE 
Sbjct: 121 LRWLQRWEEEGLGGVPEQ 138

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} Length = 198

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

 Score = 40.4 bits (93), Expect = 3e-04
 Identities = 16/74 (21%), Positives = 27/74 (36%), Gaps = 2/74 (2%)

Query: 114 VDLKHLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRCLDL 173
           V       ++L G      ++   L +LK  ++L LS      I    L  + NLR L L
Sbjct: 20  VVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKISS--LSGMENLRILSL 77

Query: 174 SWSEYALQVHSFSW 187
             +      +  + 
Sbjct: 78  GRNLIKKIENLDAV 91

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.4 bits (88), Expect = 0.001
 Identities = 15/115 (13%), Positives = 30/115 (26%), Gaps = 4/115 (3%)

Query: 111 PSLVDLKHLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRC 170
               +      LDL G       I     +L     ++ S  E   +       L  L+ 
Sbjct: 12  AQYTNAVRDRELDLRGYKIP--VIENLGATLDQFDAIDFSDNEIRKLDGF--PLLRRLKT 67

Query: 171 LDLSWSEYALQVHSFSWLSGQIPNRLGNLTSLRHLDLSANKFNSTTAGWLSKFNH 225
           L ++ +               +   +    SL  L       +  +  +L    +
Sbjct: 68  LLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRN 122

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.0 bits (87), Expect = 0.002
 Identities = 22/144 (15%), Positives = 43/144 (29%), Gaps = 5/144 (3%)

Query: 315 ISGHLTSQLGQF---KSLRTLSLDDNCISGPLPPALGDLSSLTRLDLSRNMLNGSIPLSL 371
           ++  L  Q  Q+      R L L    I   +      L     +D S N +       L
Sbjct: 3   LTAELIEQAAQYTNAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRKLDGFPL 61

Query: 372 GKISHLEYLDLSNNKMNGTLSEIHFVNLTKLTWFSASGNSLILQVNPNWVPPFQLKTLLL 431
            +      ++ +     G   +    +LT+L   + S   L        +       +L 
Sbjct: 62  LRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILR 121

Query: 432 MSCHLGPQFPSW-LHSQKNLSVLD 454
                   +  + ++    + VLD
Sbjct: 122 NPVTNKKHYRLYVIYKVPQVRVLD 145

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.5 bits (83), Expect = 0.004
 Identities = 16/149 (10%), Positives = 28/149 (18%), Gaps = 15/149 (10%)

Query: 345 PALGDLSSLTRLDLSRNMLNGSIPLSLGKISHLEYLDLSNNKMNGTLSEIHFVNLTKLTW 404
               +      LDL    +   I      +   + +D S+N++           L     
Sbjct: 12  AQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKT--- 67

Query: 405 FSASGNSLILQVNPNWVPPFQLKTLLLMSCHLGPQFPSWLHSQKNLSVLDISNARISDTI 464
                  +                  L    L       L     L+ L           
Sbjct: 68  -----LLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRN 122

Query: 465 PRWFWNSIFQLSGIIPESFKNFSNLEVLN 493
           P                       + VL+
Sbjct: 123 PVTN------KKHYRLYVIYKVPQVRVLD 145

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	794
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	100.0
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.97
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.94
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.94
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.92
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.91
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.9
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.89
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.86
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.84
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.8
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.77
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.75
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.74
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.69
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.68
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.67
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.67
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.66
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.65
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.63
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.62
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.61
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.57
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.52
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.51
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.46
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.43
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.43
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.42
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.41
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.37
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.26
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.18
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.14
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.12
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.23
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.22
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.5
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.4
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.64
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.62

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=100.00  E-value=8.4e-40  Score=343.02  Aligned_cols=294  Identities=31%  Similarity=0.519  Sum_probs=231.9

Q ss_pred             CCCHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcc--eeeeEecCCC--CcEEEEEcCCCCCccccccchhhhhcccccc
Q 046398           30 GCTDSEREALLKLKQDLKDPSNRLGSWVVDGDCCK--WAEVVCSNLT--GHVLQLSLRNPFRNDLRYATTEYEDYMRSML  105 (794)
Q Consensus        30 ~~~~~~~~~ll~~k~~~~~~~~~~~~W~~~~~~c~--w~gv~c~~~~--~~v~~L~l~~~~~~~~~~~~~~~~~~~~~~l  105 (794)
                      -|.++||+||++||+++.+|. .+++|..++|||.  |.||+|+..+  +||++|+|++.                  .+
T Consensus         2 ~c~~~e~~aLl~~k~~~~~~~-~l~sW~~~~d~C~~~w~gv~C~~~~~~~~v~~L~L~~~------------------~l   62 (313)
T d1ogqa_           2 LCNPQDKQALLQIKKDLGNPT-TLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGL------------------NL   62 (313)
T ss_dssp             CSCHHHHHHHHHHHHHTTCCG-GGTTCCTTSCTTTTCSTTEEECCSSSCCCEEEEEEECC------------------CC
T ss_pred             CCCHHHHHHHHHHHHHCCCCC-cCCCCCCCCCCCCCcCCCeEEeCCCCcEEEEEEECCCC------------------CC
Confidence            499999999999999999874 6899988899994  9999998643  48999999984                  56


Q ss_pred             ce--eecccccCCCCCCEEeCCC-CCCCCCCCCcccCCCCCCCEEEcCCCCCCCCCcccccCCccccccccCcccccccc
Q 046398          106 SG--NVNPSLVDLKHLTHLDLSG-NDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRCLDLSWSEYALQV  182 (794)
Q Consensus       106 ~g--~~~~~l~~l~~L~~L~Ls~-n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~~~~~~~~  182 (794)
                      +|  .+|+.++++++|++|+|++ |++++. +|+.|+++++|++|+|++|++.+..|..+..+.+|+++++++|.     
T Consensus        63 ~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~-iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~-----  136 (313)
T d1ogqa_          63 PKPYPIPSSLANLPYLNFLYIGGINNLVGP-IPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNA-----  136 (313)
T ss_dssp             SSCEECCGGGGGCTTCSEEEEEEETTEESC-CCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSE-----
T ss_pred             CCCCCCChHHhcCccccccccccccccccc-cccccccccccchhhhccccccccccccccchhhhccccccccc-----
Confidence            66  5789999999999999986 788874 89999999999999999999998888889999999999998776     


Q ss_pred             ccccccccCCCCccCCCCCCCEEECcCCCCCCCCCccccCCCCC-CeEeeeccCCCCCCCccccCCCCCCcEEEccCCCC
Q 046398          183 HSFSWLSGQIPNRLGNLTSLRHLDLSANKFNSTTAGWLSKFNHL-EFLSLSSNGLQGTISSIGLENLTSIKTIDLSLNFE  261 (794)
Q Consensus       183 ~~~~~~~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L-~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~~~~  261 (794)
                           ..+.+|..+.++++|+++++++|.+.+.+|..+..+.++ +.+++++|++++..+. .+.++..+ .++++ .+.
T Consensus       137 -----~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~-~~~~l~~~-~l~l~-~~~  208 (313)
T d1ogqa_         137 -----LSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPP-TFANLNLA-FVDLS-RNM  208 (313)
T ss_dssp             -----EESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCG-GGGGCCCS-EEECC-SSE
T ss_pred             -----ccccCchhhccCcccceeeccccccccccccccccccccccccccccccccccccc-cccccccc-ccccc-ccc
Confidence                 345778888889999999999998888888888777765 7788888877766555 44444333 45554 334


Q ss_pred             CCCCCchhhhccCCCCEEEccCCCCCcchHHHHHhhhhcCcCCccEEEeecccccccccccccCCCCCCEEEccCCcCcC
Q 046398          262 LGGPIPTSFVRLCELTSIDVSDVKLSQDLSQVLDILSACGASALESLVFSSSQISGHLTSQLGQFKSLRTLSLDDNCISG  341 (794)
Q Consensus       262 ~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~  341 (794)
                      ..+.+|..+..++                             +++.+++++|.+.+.++ .+..+++|+.|++++|+++|
T Consensus       209 ~~~~~~~~~~~~~-----------------------------~l~~l~~~~~~l~~~~~-~~~~~~~L~~L~Ls~N~l~g  258 (313)
T d1ogqa_         209 LEGDASVLFGSDK-----------------------------NTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYG  258 (313)
T ss_dssp             EEECCGGGCCTTS-----------------------------CCSEEECCSSEECCBGG-GCCCCTTCCEEECCSSCCEE
T ss_pred             ccccccccccccc-----------------------------ccccccccccccccccc-ccccccccccccCccCeecc
Confidence            4444444444444                             55555555565555444 46677888888888888888


Q ss_pred             CCCCCcCCCCCCCEEEccCCcccccCCccccCCCCCCeEeccCccc
Q 046398          342 PLPPALGDLSSLTRLDLSRNMLNGSIPLSLGKISHLEYLDLSNNKM  387 (794)
Q Consensus       342 ~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l  387 (794)
                      .+|.+++++++|++|+|++|+++|.+|. ++++++|+.+++++|+.
T Consensus       259 ~iP~~l~~L~~L~~L~Ls~N~l~g~iP~-~~~L~~L~~l~l~~N~~  303 (313)
T d1ogqa_         259 TLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANNKC  303 (313)
T ss_dssp             CCCGGGGGCTTCCEEECCSSEEEEECCC-STTGGGSCGGGTCSSSE
T ss_pred             cCChHHhCCCCCCEEECcCCcccccCCC-cccCCCCCHHHhCCCcc
Confidence            8888888888888888888888888874 57788888888888873

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.97  E-value=3.5e-31  Score=276.93  Aligned_cols=260  Identities=27%  Similarity=0.489  Sum_probs=213.5

Q ss_pred             CCCCeEeccCcccccc--cChhhhcCCCCCCEEECcCCcceeEcCCCCcCccccceEecccccCCCCCCcccCCCCCCCE
Q 046398          375 SHLEYLDLSNNKMNGT--LSEIHFVNLTKLTWFSASGNSLILQVNPNWVPPFQLKTLLLMSCHLGPQFPSWLHSQKNLSV  452 (794)
Q Consensus       375 ~~L~~L~Ls~N~l~~~--~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~  452 (794)
                      .+++.|+|++|.+.|.  +|. .+.++++|++|+++++                       |.+.+.+|..+.++++|++
T Consensus        50 ~~v~~L~L~~~~l~g~~~lp~-~l~~L~~L~~L~Ls~~-----------------------N~l~g~iP~~i~~L~~L~~  105 (313)
T d1ogqa_          50 YRVNNLDLSGLNLPKPYPIPS-SLANLPYLNFLYIGGI-----------------------NNLVGPIPPAIAKLTQLHY  105 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCG-GGGGCTTCSEEEEEEE-----------------------TTEESCCCGGGGGCTTCSE
T ss_pred             EEEEEEECCCCCCCCCCCCCh-HHhcCccccccccccc-----------------------cccccccccccccccccch
Confidence            3577777777777653  344 4555555555555431                       3445567777888888888


Q ss_pred             EeccCCCCCCCcchhHHhccccceeccCcccCCCCCCCEEEccCCcccccCChhhhhcCCCCcEEEcccccccccCCccc
Q 046398          453 LDISNARISDTIPRWFWNSIFQLSGIIPESFKNFSNLEVLNLGDNEFVGKIPTWMGEGFTSLLILILRSNKFDGFLPIQL  532 (794)
Q Consensus       453 L~Ls~n~l~~~~p~~~~~~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~~  532 (794)
                      |++++|++.+               ..+..+..+++|+.+++++|++.+.+|..+. .++.++.+++++|.+.+.+|..+
T Consensus       106 L~Ls~N~l~~---------------~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~-~l~~L~~l~l~~n~l~~~ip~~~  169 (313)
T d1ogqa_         106 LYITHTNVSG---------------AIPDFLSQIKTLVTLDFSYNALSGTLPPSIS-SLPNLVGITFDGNRISGAIPDSY  169 (313)
T ss_dssp             EEEEEECCEE---------------ECCGGGGGCTTCCEEECCSSEEESCCCGGGG-GCTTCCEEECCSSCCEEECCGGG
T ss_pred             hhhccccccc---------------cccccccchhhhcccccccccccccCchhhc-cCcccceeecccccccccccccc
Confidence            8888887665               3555677788888899998888888888776 68889999999998888888888


Q ss_pred             cCCCCC-CEEEccCCcCcccCCchhhccccccccccccCCCCcccccccccccccceeeEEEEeccchhhcccccceeEE
Q 046398          533 CRLTSL-QILDVANNSLSGTMPGCVNNFSAMATIDSSHQSNAMSYFEVTAYDCEVLEDASIVMKGSMVEYNSILNLVRII  611 (794)
Q Consensus       533 ~~l~~L-~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L  611 (794)
                      ..+..+ +.+++++|++++..|..+.++..                                               ..+
T Consensus       170 ~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~-----------------------------------------------~~l  202 (313)
T d1ogqa_         170 GSFSKLFTSMTISRNRLTGKIPPTFANLNL-----------------------------------------------AFV  202 (313)
T ss_dssp             GCCCTTCCEEECCSSEEEEECCGGGGGCCC-----------------------------------------------SEE
T ss_pred             cccccccccccccccccccccccccccccc-----------------------------------------------ccc
Confidence            887776 88889999988888776654321                                               468


Q ss_pred             EcCCCccccccChhhhcccCCCEEecccccccccCCccccccCCCCEEeCCCCcCcccCcccccCCCCCCEEeCcCCccc
Q 046398          612 DVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQIPENIGNLISIESLDFSTNQLSSKISQSMSSLSFLNHLNVSNNLLT  691 (794)
Q Consensus       612 dLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~  691 (794)
                      +++++...+.+|..+..+++++.+++++|.+++.+| .++.+++|+.|+|++|+++|.+|+.++++++|++|||++|+|+
T Consensus       203 ~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~  281 (313)
T d1ogqa_         203 DLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLC  281 (313)
T ss_dssp             ECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEE
T ss_pred             cccccccccccccccccccccccccccccccccccc-ccccccccccccCccCeecccCChHHhCCCCCCEEECcCCccc
Confidence            999999999999999999999999999999997765 5899999999999999999999999999999999999999999


Q ss_pred             ccCCCCCccCccCcccccCC-CcCCCCCCCCC
Q 046398          692 GKIPSSTQLQSFDASCFVGN-NLCGPPLPSCT  722 (794)
Q Consensus       692 g~iP~~~~~~~~~~~~~~gn-~lcg~~~~~c~  722 (794)
                      |+||+.+.++.++...+.|| .|||.|++.|.
T Consensus       282 g~iP~~~~L~~L~~l~l~~N~~l~g~plp~c~  313 (313)
T d1ogqa_         282 GEIPQGGNLQRFDVSAYANNKCLCGSPLPACT  313 (313)
T ss_dssp             EECCCSTTGGGSCGGGTCSSSEEESTTSSCCC
T ss_pred             ccCCCcccCCCCCHHHhCCCccccCCCCCCCC
Confidence            99999989999999999999 79999988773

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.94  E-value=1.3e-25  Score=241.57  Aligned_cols=353  Identities=27%  Similarity=0.343  Sum_probs=210.4

Q ss_pred             ccccceeecccccCCCCCCEEeCCCCCCCCCCCCcccCCCCCCCEEEcCCCCCCCCCcccccCCccccccccCccccccc
Q 046398          102 RSMLSGNVNPSLVDLKHLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRCLDLSWSEYALQ  181 (794)
Q Consensus       102 ~~~l~g~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~~~~~~~  181 (794)
                      ...+++.+.  ...+.+|++|+++++.++.  + +.+..+++|++|++++|++++. | .++++++|++|++++|.+.  
T Consensus        31 ~~~~~~~~~--~~~l~~l~~L~l~~~~I~~--l-~gl~~L~nL~~L~Ls~N~l~~l-~-~l~~L~~L~~L~L~~n~i~--  101 (384)
T d2omza2          31 KTNVTDTVS--QTDLDQVTTLQADRLGIKS--I-DGVEYLNNLTQINFSNNQLTDI-T-PLKNLTKLVDILMNNNQIA--  101 (384)
T ss_dssp             CSSTTSEEC--HHHHTTCCEEECCSSCCCC--C-TTGGGCTTCCEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCC--
T ss_pred             CCCCCCccC--HHHhCCCCEEECCCCCCCC--c-cccccCCCCCEEeCcCCcCCCC-c-cccCCcccccccccccccc--
Confidence            345555543  3577899999999999984  3 4578899999999999999854 4 3899999999999988754  


Q ss_pred             cccccccccCCCCccCCCCCCCEEECcCCCCCCCCCccccCCCCCCeEeeeccCCCCCCCccccCCCCCCcEEEccCCCC
Q 046398          182 VHSFSWLSGQIPNRLGNLTSLRHLDLSANKFNSTTAGWLSKFNHLEFLSLSSNGLQGTISSIGLENLTSIKTIDLSLNFE  261 (794)
Q Consensus       182 ~~~~~~~~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~~~~  261 (794)
                               .++ .++++++|+.|+++++.+++..+  ......+..+....|.+...... ..............    
T Consensus       102 ---------~i~-~l~~l~~L~~L~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~----  164 (384)
T d2omza2         102 ---------DIT-PLANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDISAL-SGLTSLQQLSFGNQ----  164 (384)
T ss_dssp             ---------CCG-GGTTCTTCCEEECCSSCCCCCGG--GTTCTTCSEEEEEEEEECCCGGG-TTCTTCSEEEEEES----
T ss_pred             ---------ccc-ccccccccccccccccccccccc--ccccccccccccccccccccccc-cccccccccccccc----
Confidence                     233 47889999999999998876654  44556777777777765432211 11111111111111    


Q ss_pred             CCCCCchhhhccCCCCEEEccCCCCCcchHHHHHhhhhcCcCCccEEEeecccccccccccccCCCCCCEEEccCCcCcC
Q 046398          262 LGGPIPTSFVRLCELTSIDVSDVKLSQDLSQVLDILSACGASALESLVFSSSQISGHLTSQLGQFKSLRTLSLDDNCISG  341 (794)
Q Consensus       262 ~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~  341 (794)
                        ......+.............+.....  .....     +++++.+++++|.+++..+  +..+++|++|++++|.++.
T Consensus       165 --~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-----l~~~~~l~l~~n~i~~~~~--~~~~~~L~~L~l~~n~l~~  233 (384)
T d2omza2         165 --VTDLKPLANLTTLERLDISSNKVSDI--SVLAK-----LTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD  233 (384)
T ss_dssp             --CCCCGGGTTCTTCCEEECCSSCCCCC--GGGGG-----CTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC
T ss_pred             --cchhhhhccccccccccccccccccc--ccccc-----ccccceeeccCCccCCCCc--ccccCCCCEEECCCCCCCC
Confidence              11122233333333333333332211  11111     1244555555554444332  2334455555555555542


Q ss_pred             CCCCCcCCCCCCCEEEccCCcccccCCccccCCCCCCeEeccCcccccccChhhhcCCCCCCEEECcCCcceeEcCCCCc
Q 046398          342 PLPPALGDLSSLTRLDLSRNMLNGSIPLSLGKISHLEYLDLSNNKMNGTLSEIHFVNLTKLTWFSASGNSLILQVNPNWV  421 (794)
Q Consensus       342 ~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~  421 (794)
                      .  ..+..+++|+.|++++|.+++..+  ++.+++|++|++++|++.+. +  .+..++                     
T Consensus       234 ~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~~~l~~~-~--~~~~~~---------------------  285 (384)
T d2omza2         234 I--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNI-S--PLAGLT---------------------  285 (384)
T ss_dssp             C--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCC-G--GGTTCT---------------------
T ss_pred             c--chhhcccccchhccccCccCCCCc--ccccccCCEeeccCcccCCC-C--cccccc---------------------
Confidence            1  234444555555555555543221  44445555555555554421 1  133333                     


Q ss_pred             CccccceEecccccCCCCCCcccCCCCCCCEEeccCCCCCCCcchhHHhccccceeccCcccCCCCCCCEEEccCCcccc
Q 046398          422 PPFQLKTLLLMSCHLGPQFPSWLHSQKNLSVLDISNARISDTIPRWFWNSIFQLSGIIPESFKNFSNLEVLNLGDNEFVG  501 (794)
Q Consensus       422 ~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~  501 (794)
                         .++.+.+..|.+.+  ...+..+++++.|++++|++++.                + .+..+++|++|++++|+++ 
T Consensus       286 ---~l~~l~~~~n~l~~--~~~~~~~~~l~~L~ls~n~l~~l----------------~-~l~~l~~L~~L~L~~n~l~-  342 (384)
T d2omza2         286 ---ALTNLELNENQLED--ISPISNLKNLTYLTLYFNNISDI----------------S-PVSSLTKLQRLFFANNKVS-  342 (384)
T ss_dssp             ---TCSEEECCSSCCSC--CGGGGGCTTCSEEECCSSCCSCC----------------G-GGGGCTTCCEEECCSSCCC-
T ss_pred             ---cccccccccccccc--ccccchhcccCeEECCCCCCCCC----------------c-ccccCCCCCEEECCCCCCC-
Confidence               44444444444443  22356677888888888888762                2 2567888999999999887 


Q ss_pred             cCChhhhhcCCCCcEEEcccccccccCCccccCCCCCCEEEccCC
Q 046398          502 KIPTWMGEGFTSLLILILRSNKFDGFLPIQLCRLTSLQILDVANN  546 (794)
Q Consensus       502 ~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N  546 (794)
                      .++ .+. .+++|++|++++|++++..|  +.++++|+.|+|++|
T Consensus       343 ~l~-~l~-~l~~L~~L~l~~N~l~~l~~--l~~l~~L~~L~L~~N  383 (384)
T d2omza2         343 DVS-SLA-NLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ  383 (384)
T ss_dssp             CCG-GGG-GCTTCCEEECCSSCCCBCGG--GTTCTTCSEEECCCE
T ss_pred             CCh-hHc-CCCCCCEEECCCCcCCCChh--hccCCCCCEeeCCCC
Confidence            455 344 68899999999998887654  788889999999887

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.94  E-value=2.4e-25  Score=239.51  Aligned_cols=78  Identities=23%  Similarity=0.336  Sum_probs=65.4

Q ss_pred             ccceeEEEcCCCccccccChhhhcccCCCEEecccccccccCCccccccCCCCEEeCCCCcCcccCcccccCCCCCCEEe
Q 046398          605 LNLVRIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQIPENIGNLISIESLDFSTNQLSSKISQSMSSLSFLNHLN  684 (794)
Q Consensus       605 l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~  684 (794)
                      ++.++.|++++|++++..  .+..+++|++|++++|++++ +| .++++++|++|++++|++++.+|  +.++++|+.|+
T Consensus       306 ~~~l~~L~ls~n~l~~l~--~l~~l~~L~~L~L~~n~l~~-l~-~l~~l~~L~~L~l~~N~l~~l~~--l~~l~~L~~L~  379 (384)
T d2omza2         306 LKNLTYLTLYFNNISDIS--PVSSLTKLQRLFFANNKVSD-VS-SLANLTNINWLSAGHNQISDLTP--LANLTRITQLG  379 (384)
T ss_dssp             CTTCSEEECCSSCCSCCG--GGGGCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECCSSCCCBCGG--GTTCTTCSEEE
T ss_pred             hcccCeEECCCCCCCCCc--ccccCCCCCEEECCCCCCCC-Ch-hHcCCCCCCEEECCCCcCCCChh--hccCCCCCEee
Confidence            455688999999998653  37889999999999999984 44 58999999999999999998665  78899999999


Q ss_pred             CcCC
Q 046398          685 VSNN  688 (794)
Q Consensus       685 ls~N  688 (794)
                      |++|
T Consensus       380 L~~N  383 (384)
T d2omza2         380 LNDQ  383 (384)
T ss_dssp             CCCE
T ss_pred             CCCC
Confidence            9987

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.92  E-value=1.2e-23  Score=218.31  Aligned_cols=274  Identities=19%  Similarity=0.237  Sum_probs=149.0

Q ss_pred             CccEEEeecccccccccccccCCCCCCEEEccCCcCcCCCCCCcCCCCCCCEEEccCCcccccCCccccCCCCCCeEecc
Q 046398          304 ALESLVFSSSQISGHLTSQLGQFKSLRTLSLDDNCISGPLPPALGDLSSLTRLDLSRNMLNGSIPLSLGKISHLEYLDLS  383 (794)
Q Consensus       304 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls  383 (794)
                      ..+.++-+++.++. +|..+.  +++++|+|++|+++...+.+|.++++|++|++++|.+....|..|..+++|++|+++
T Consensus        11 ~~~~~~C~~~~L~~-lP~~l~--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~   87 (305)
T d1xkua_          11 HLRVVQCSDLGLEK-VPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS   87 (305)
T ss_dssp             ETTEEECTTSCCCS-CCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             cCCEEEecCCCCCc-cCCCCC--CCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEeccc
Confidence            34455555555553 343332  466777777777764444456666777777777777765556666666777777777


Q ss_pred             CcccccccChhhhcCCCCCCEEECcCCcceeEcCCCCcCccccceEecccccCCCCCCcccCCCCCCCEEeccCCCCCCC
Q 046398          384 NNKMNGTLSEIHFVNLTKLTWFSASGNSLILQVNPNWVPPFQLKTLLLMSCHLGPQFPSWLHSQKNLSVLDISNARISDT  463 (794)
Q Consensus       384 ~N~l~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~  463 (794)
                      +|+++ .++..   ....+..+++..|                        .+....+..+.....+..++...|.... 
T Consensus        88 ~n~l~-~l~~~---~~~~l~~L~~~~n------------------------~l~~l~~~~~~~~~~~~~l~~~~n~~~~-  138 (305)
T d1xkua_          88 KNQLK-ELPEK---MPKTLQELRVHEN------------------------EITKVRKSVFNGLNQMIVVELGTNPLKS-  138 (305)
T ss_dssp             SSCCS-BCCSS---CCTTCCEEECCSS------------------------CCCBBCHHHHTTCTTCCEEECCSSCCCG-
T ss_pred             CCccC-cCccc---hhhhhhhhhcccc------------------------chhhhhhhhhhccccccccccccccccc-
Confidence            76665 33321   1122333333332                        2222222222333334444444443221 


Q ss_pred             cchhHHhccccceeccCcccCCCCCCCEEEccCCcccccCChhhhhcCCCCcEEEcccccccccCCccccCCCCCCEEEc
Q 046398          464 IPRWFWNSIFQLSGIIPESFKNFSNLEVLNLGDNEFVGKIPTWMGEGFTSLLILILRSNKFDGFLPIQLCRLTSLQILDV  543 (794)
Q Consensus       464 ~p~~~~~~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L  543 (794)
                                  ....+..+..+++|+.+++++|+++ .+|..                           .+++|+.|++
T Consensus       139 ------------~~~~~~~~~~l~~L~~l~l~~n~l~-~l~~~---------------------------~~~~L~~L~l  178 (305)
T d1xkua_         139 ------------SGIENGAFQGMKKLSYIRIADTNIT-TIPQG---------------------------LPPSLTELHL  178 (305)
T ss_dssp             ------------GGBCTTGGGGCTTCCEEECCSSCCC-SCCSS---------------------------CCTTCSEEEC
T ss_pred             ------------cCCCccccccccccCccccccCCcc-ccCcc---------------------------cCCccCEEEC
Confidence                        0112223334444444444444443 33322                           1345555555


Q ss_pred             cCCcCcccCCchhhccccccccccccCCCCcccccccccccccceeeEEEEeccchhhcccccceeEEEcCCCccccccC
Q 046398          544 ANNSLSGTMPGCVNNFSAMATIDSSHQSNAMSYFEVTAYDCEVLEDASIVMKGSMVEYNSILNLVRIIDVSKNNFSGEIP  623 (794)
Q Consensus       544 s~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip  623 (794)
                      ++|..++..+..+.+++.+                                              +.|++++|++++..+
T Consensus       179 ~~n~~~~~~~~~~~~~~~l----------------------------------------------~~L~~s~n~l~~~~~  212 (305)
T d1xkua_         179 DGNKITKVDAASLKGLNNL----------------------------------------------AKLGLSFNSISAVDN  212 (305)
T ss_dssp             TTSCCCEECTGGGTTCTTC----------------------------------------------CEEECCSSCCCEECT
T ss_pred             CCCcCCCCChhHhhccccc----------------------------------------------ccccccccccccccc
Confidence            5555555544444333332                                              555666666665556


Q ss_pred             hhhhcccCCCEEecccccccccCCccccccCCCCEEeCCCCcCcccCccc------ccCCCCCCEEeCcCCccc-ccCCC
Q 046398          624 MELTYLRGLQSLNLSHNIFTGQIPENIGNLISIESLDFSTNQLSSKISQS------MSSLSFLNHLNVSNNLLT-GKIPS  696 (794)
Q Consensus       624 ~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~------l~~l~~L~~L~ls~N~l~-g~iP~  696 (794)
                      ..+.++++|++|+|++|+|+ .+|++|.++++|+.|+|++|+|+......      +..+.+|+.|++++|+++ +++|.
T Consensus       213 ~~~~~l~~L~~L~L~~N~L~-~lp~~l~~l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~~~~~~~  291 (305)
T d1xkua_         213 GSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQP  291 (305)
T ss_dssp             TTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCG
T ss_pred             ccccccccceeeeccccccc-ccccccccccCCCEEECCCCccCccChhhccCcchhcccCCCCEEECCCCcCccCcCCH
Confidence            66667777777777777777 56777777777777777777777543322      345677888888888874 55554

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.91  E-value=4.8e-23  Score=213.68  Aligned_cols=253  Identities=22%  Similarity=0.315  Sum_probs=163.0

Q ss_pred             eecccccCCCCCCEEeCCCCCCCCCCCC-cccCCCCCCCEEEcCCCCCCCCCcccccCCccccccccCcccccccccccc
Q 046398          108 NVNPSLVDLKHLTHLDLSGNDFQGIRIP-KYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRCLDLSWSEYALQVHSFS  186 (794)
Q Consensus       108 ~~~~~l~~l~~L~~L~Ls~n~l~~~~~p-~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~~~~~~~~~~~~  186 (794)
                      .+|+.+.  +.+++|+|++|+++.  +| ..|.++++|++|++++|.+....|..|.++++|++|++++|++.       
T Consensus        24 ~lP~~l~--~~l~~L~Ls~N~i~~--l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~l~-------   92 (305)
T d1xkua_          24 KVPKDLP--PDTALLDLQNNKITE--IKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-------   92 (305)
T ss_dssp             SCCCSCC--TTCCEEECCSSCCCC--BCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-------
T ss_pred             ccCCCCC--CCCCEEECcCCcCCC--cChhHhhccccccccccccccccccchhhhhCCCccCEecccCCccC-------
Confidence            3455553  589999999999985  55 46899999999999999999877888999999999999988765       


Q ss_pred             ccccCCCCccCCCCCCCEEECcCCCCCCCCCccccCCCCCCeEeeeccCCCCC-CCccccCCCCCCcEEEccCCCCCCCC
Q 046398          187 WLSGQIPNRLGNLTSLRHLDLSANKFNSTTAGWLSKFNHLEFLSLSSNGLQGT-ISSIGLENLTSIKTIDLSLNFELGGP  265 (794)
Q Consensus       187 ~~~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~-i~~~~l~~l~~L~~L~L~~~~~~~~~  265 (794)
                          .+|..+  ...++.|++++|.+.+..+..+.....++.++...|..... .....+..+++|+.++++ ++.+.. 
T Consensus        93 ----~l~~~~--~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~-~n~l~~-  164 (305)
T d1xkua_          93 ----ELPEKM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIA-DTNITT-  164 (305)
T ss_dssp             ----BCCSSC--CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECC-SSCCCS-
T ss_pred             ----cCccch--hhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccc-cCCccc-
Confidence                456543  35788899999888887777777777888887777654311 111134455555555555 222221 


Q ss_pred             CchhhhccCCCCEEEccCCCCCcchHHHHHhhhhcCcCCccEEEeecccccccccccccCCCCCCEEEccCCcCcCCCCC
Q 046398          266 IPTSFVRLCELTSIDVSDVKLSQDLSQVLDILSACGASALESLVFSSSQISGHLTSQLGQFKSLRTLSLDDNCISGPLPP  345 (794)
Q Consensus       266 ~~~~l~~l~~L~~L~l~~~~l~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~  345 (794)
                      +|..+  ++                             +|++|++++|..++..+..+..++.+++|++++|.+++..+.
T Consensus       165 l~~~~--~~-----------------------------~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~  213 (305)
T d1xkua_         165 IPQGL--PP-----------------------------SLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNG  213 (305)
T ss_dssp             CCSSC--CT-----------------------------TCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTT
T ss_pred             cCccc--CC-----------------------------ccCEEECCCCcCCCCChhHhhccccccccccccccccccccc
Confidence            12111  23                             555555555555555555566666666666666666655555


Q ss_pred             CcCCCCCCCEEEccCCcccccCCccccCCCCCCeEeccCcccccccChhhh------cCCCCCCEEECcCCcc
Q 046398          346 ALGDLSSLTRLDLSRNMLNGSIPLSLGKISHLEYLDLSNNKMNGTLSEIHF------VNLTKLTWFSASGNSL  412 (794)
Q Consensus       346 ~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~------~~l~~L~~L~ls~n~l  412 (794)
                      ++.++++|++|+|++|+++ .+|.++..+++|++|++++|+++ .++...|      ...++|+.+++++|++
T Consensus       214 ~~~~l~~L~~L~L~~N~L~-~lp~~l~~l~~L~~L~Ls~N~i~-~i~~~~f~~~~~~~~~~~L~~L~L~~N~~  284 (305)
T d1xkua_         214 SLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNIS-AIGSNDFCPPGYNTKKASYSGVSLFSNPV  284 (305)
T ss_dssp             TGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCC-CCCTTSSSCSSCCTTSCCCSEEECCSSSS
T ss_pred             cccccccceeeeccccccc-ccccccccccCCCEEECCCCccC-ccChhhccCcchhcccCCCCEEECCCCcC
Confidence            5556666666666666665 44555666666666666666655 3333222      2345566666666654

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=5.1e-23  Score=210.94  Aligned_cols=167  Identities=17%  Similarity=0.227  Sum_probs=92.7

Q ss_pred             ccCCCCCCCEEEccCCcccccCChhhhhcCCCCcEEEcccccccccCCccccCCCCCCEEEccCCcCcccCCchhhcccc
Q 046398          482 SFKNFSNLEVLNLGDNEFVGKIPTWMGEGFTSLLILILRSNKFDGFLPIQLCRLTSLQILDVANNSLSGTMPGCVNNFSA  561 (794)
Q Consensus       482 ~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~  561 (794)
                      .+.++++|++|++++|.+. .++...+...++|+.+++++|++++..+..|..+++|+.|++++|++++..+..|.++++
T Consensus       100 ~~~~l~~L~~L~l~~n~~~-~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~  178 (284)
T d1ozna_         100 TFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHS  178 (284)
T ss_dssp             TTTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTT
T ss_pred             hhcccccCCEEecCCcccc-cccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhhhccccc
Confidence            3444555555555555554 233222224455555555555555544555555666666666666665555544444333


Q ss_pred             ccccccccCCCCcccccccccccccceeeEEEEeccchhhcccccceeEEEcCCCccccccChhhhcccCCCEEeccccc
Q 046398          562 MATIDSSHQSNAMSYFEVTAYDCEVLEDASIVMKGSMVEYNSILNLVRIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNI  641 (794)
Q Consensus       562 L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~  641 (794)
                      |                                              +.+++++|++++..|..|..+++|++|++++|+
T Consensus       179 L----------------------------------------------~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~  212 (284)
T d1ozna_         179 L----------------------------------------------DRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANN  212 (284)
T ss_dssp             C----------------------------------------------CEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred             c----------------------------------------------chhhhhhccccccChhHhhhhhhcccccccccc
Confidence            3                                              556666666666666666666666666666666


Q ss_pred             ccccCCccccccCCCCEEeCCCCcCcccCcccccCCCCCCEEeCcCCcccccCCC
Q 046398          642 FTGQIPENIGNLISIESLDFSTNQLSSKISQSMSSLSFLNHLNVSNNLLTGKIPS  696 (794)
Q Consensus       642 l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~  696 (794)
                      +++..|..|+++++|+.|++++|++.+..+.. .-...++.+....+.+.+..|.
T Consensus       213 i~~~~~~~~~~~~~L~~L~l~~N~l~C~C~~~-~l~~~l~~~~~~~~~~~C~~p~  266 (284)
T d1ozna_         213 LSALPTEALAPLRALQYLRLNDNPWVCDCRAR-PLWAWLQKFRGSSSEVPCSLPQ  266 (284)
T ss_dssp             CSCCCHHHHTTCTTCCEEECCSSCEECSGGGH-HHHHHHHHCCSEECCCBEEESG
T ss_pred             cccccccccccccccCEEEecCCCCCCCccch-HHHHHHHhCcCCCCceEeCCch
Confidence            66655566666666667777666666543311 1112344555555666655554

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=1e-22  Score=208.63  Aligned_cols=165  Identities=21%  Similarity=0.227  Sum_probs=87.9

Q ss_pred             cCCCCCCCEEEccC-CcccccCChhhhhcCCCCcEEEcccccccccCCccccCCCCCCEEEccCCcCcccCCchhhcccc
Q 046398          483 FKNFSNLEVLNLGD-NEFVGKIPTWMGEGFTSLLILILRSNKFDGFLPIQLCRLTSLQILDVANNSLSGTMPGCVNNFSA  561 (794)
Q Consensus       483 l~~l~~L~~L~Ls~-n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~  561 (794)
                      +..++.++.++... |.++ .++...+.++++|++|++++|.+....+..+...++|+.+++++|++++..+..|..++.
T Consensus        76 ~~~~~~~~~l~~~~~~~~~-~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~  154 (284)
T d1ozna_          76 FTGLALLEQLDLSDNAQLR-SVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGN  154 (284)
T ss_dssp             TTTCTTCCEEECCSCTTCC-CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred             ccccccccccccccccccc-cccchhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccc
Confidence            33444444444432 2232 333333334555666666665555444455555555666666666555444444433332


Q ss_pred             ccccccccCCCCcccccccccccccceeeEEEEeccchhhcccccceeEEEcCCCccccccChhhhcccCCCEEeccccc
Q 046398          562 MATIDSSHQSNAMSYFEVTAYDCEVLEDASIVMKGSMVEYNSILNLVRIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNI  641 (794)
Q Consensus       562 L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~  641 (794)
                      +                                              +.|++++|++++..+..+.++++|+.+++++|+
T Consensus       155 L----------------------------------------------~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~  188 (284)
T d1ozna_         155 L----------------------------------------------THLFLHGNRISSVPERAFRGLHSLDRLLLHQNR  188 (284)
T ss_dssp             C----------------------------------------------CEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred             h----------------------------------------------hhcccccCcccccchhhhccccccchhhhhhcc
Confidence            2                                              555555555555555555555566666666666


Q ss_pred             ccccCCccccccCCCCEEeCCCCcCcccCcccccCCCCCCEEeCcCCcccccC
Q 046398          642 FTGQIPENIGNLISIESLDFSTNQLSSKISQSMSSLSFLNHLNVSNNLLTGKI  694 (794)
Q Consensus       642 l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~i  694 (794)
                      +++..|..|.++++|+.||+++|++.+..|..+..+++|++|++++|++.+..
T Consensus       189 l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~C  241 (284)
T d1ozna_         189 VAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDC  241 (284)
T ss_dssp             CCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSG
T ss_pred             ccccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCCCCc
Confidence            55555555555556666666666665555555555555666666666555543

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=3.9e-21  Score=194.51  Aligned_cols=200  Identities=21%  Similarity=0.229  Sum_probs=158.3

Q ss_pred             ccceEecccccCCCCCCcccCCCCCCCEEeccCCCCCCCcchhHHhccccceeccCcccCCCCCCCEEEccCCcccccCC
Q 046398          425 QLKTLLLMSCHLGPQFPSWLHSQKNLSVLDISNARISDTIPRWFWNSIFQLSGIIPESFKNFSNLEVLNLGDNEFVGKIP  504 (794)
Q Consensus       425 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip  504 (794)
                      .+.+++.+++.++. +|..+.  +++++|+|++|+|++               ..+..|.++++|++|+|++|+++ .+|
T Consensus        11 ~~~~v~C~~~~L~~-iP~~lp--~~l~~L~Ls~N~i~~---------------l~~~~f~~l~~L~~L~L~~N~l~-~l~   71 (266)
T d1p9ag_          11 SHLEVNCDKRNLTA-LPPDLP--KDTTILHLSENLLYT---------------FSLATLMPYTRLTQLNLDRAELT-KLQ   71 (266)
T ss_dssp             TCCEEECTTSCCSS-CCSCCC--TTCCEEECTTSCCSE---------------EEGGGGTTCTTCCEEECTTSCCC-EEE
T ss_pred             CCeEEEccCCCCCe-eCcCcC--cCCCEEECcCCcCCC---------------cCHHHhhcccccccccccccccc-ccc
Confidence            34445555555553 454442  578899999998875               23356788899999999999887 566


Q ss_pred             hhhhhcCCCCcEEEcccccccccCCccccCCCCCCEEEccCCcCcccCCchhhccccccccccccCCCCccccccccccc
Q 046398          505 TWMGEGFTSLLILILRSNKFDGFLPIQLCRLTSLQILDVANNSLSGTMPGCVNNFSAMATIDSSHQSNAMSYFEVTAYDC  584 (794)
Q Consensus       505 ~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~  584 (794)
                      ..  ..+++|+.|+|++|++++ .+..+..+++|++|++++|.+.+..+..+..+.                        
T Consensus        72 ~~--~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~------------------------  124 (266)
T d1p9ag_          72 VD--GTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLG------------------------  124 (266)
T ss_dssp             CC--SCCTTCCEEECCSSCCSS-CCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCT------------------------
T ss_pred             cc--cccccccccccccccccc-cccccccccccccccccccccceeecccccccc------------------------
Confidence            43  258899999999999885 466788899999999999988765555444433                        


Q ss_pred             ccceeeEEEEeccchhhcccccceeEEEcCCCccccccChhhhcccCCCEEecccccccccCCccccccCCCCEEeCCCC
Q 046398          585 EVLEDASIVMKGSMVEYNSILNLVRIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQIPENIGNLISIESLDFSTN  664 (794)
Q Consensus       585 ~~l~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N  664 (794)
                                            .++.|++++|.+++..+..+..++.|+.|++++|++++..++.|+.+++|++|||++|
T Consensus       125 ----------------------~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N  182 (266)
T d1p9ag_         125 ----------------------ELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQEN  182 (266)
T ss_dssp             ----------------------TCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred             ----------------------ccccccccccccceeccccccccccchhcccccccccccCccccccccccceeecccC
Confidence                                  3488999999999777777888999999999999999887888999999999999999


Q ss_pred             cCcccCcccccCCCCCCEEeCcCCccccc
Q 046398          665 QLSSKISQSMSSLSFLNHLNVSNNLLTGK  693 (794)
Q Consensus       665 ~l~~~~p~~l~~l~~L~~L~ls~N~l~g~  693 (794)
                      +|+ .+|+.+..+++|+.|+|++|++...
T Consensus       183 ~L~-~lp~~~~~~~~L~~L~L~~Np~~Cd  210 (266)
T d1p9ag_         183 SLY-TIPKGFFGSHLLPFAFLHGNPWLCN  210 (266)
T ss_dssp             CCC-CCCTTTTTTCCCSEEECCSCCBCCS
T ss_pred             CCc-ccChhHCCCCCCCEEEecCCCCCCC
Confidence            998 7888888999999999999998754

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=2e-20  Score=189.11  Aligned_cols=178  Identities=20%  Similarity=0.178  Sum_probs=148.3

Q ss_pred             ccceEecccccCCCCCCcccCCCCCCCEEeccCCCCCCCcchhHHhccccceeccCcccCCCCCCCEEEccCCcccccCC
Q 046398          425 QLKTLLLMSCHLGPQFPSWLHSQKNLSVLDISNARISDTIPRWFWNSIFQLSGIIPESFKNFSNLEVLNLGDNEFVGKIP  504 (794)
Q Consensus       425 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip  504 (794)
                      .+++|+|++|.+++..+..|..+++|++|++++|+++.                +| .+..+++|++|++++|+++ .++
T Consensus        32 ~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~----------------l~-~~~~l~~L~~L~Ls~N~l~-~~~   93 (266)
T d1p9ag_          32 DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK----------------LQ-VDGTLPVLGTLDLSHNQLQ-SLP   93 (266)
T ss_dssp             TCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE----------------EE-CCSCCTTCCEEECCSSCCS-SCC
T ss_pred             CCCEEECcCCcCCCcCHHHhhccccccccccccccccc----------------cc-ccccccccccccccccccc-ccc
Confidence            56666666666665556678888999999999998874                22 3567889999999999998 455


Q ss_pred             hhhhhcCCCCcEEEcccccccccCCccccCCCCCCEEEccCCcCcccCCchhhccccccccccccCCCCccccccccccc
Q 046398          505 TWMGEGFTSLLILILRSNKFDGFLPIQLCRLTSLQILDVANNSLSGTMPGCVNNFSAMATIDSSHQSNAMSYFEVTAYDC  584 (794)
Q Consensus       505 ~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~  584 (794)
                      ..+. .+++|+.|++++|++.+..+..+..+.++++|++++|.++...+..+..++.+                      
T Consensus        94 ~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l----------------------  150 (266)
T d1p9ag_          94 LLGQ-TLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKL----------------------  150 (266)
T ss_dssp             CCTT-TCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTC----------------------
T ss_pred             cccc-cccccccccccccccceeeccccccccccccccccccccceeccccccccccc----------------------
Confidence            5554 68999999999999998888888999999999999999986666555544443                      


Q ss_pred             ccceeeEEEEeccchhhcccccceeEEEcCCCccccccChhhhcccCCCEEecccccccccCCccccccCCCCEEeCCCC
Q 046398          585 EVLEDASIVMKGSMVEYNSILNLVRIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQIPENIGNLISIESLDFSTN  664 (794)
Q Consensus       585 ~~l~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N  664 (794)
                                              +.+++++|++++..+..+..+++|++|+|++|+|+ .+|+.+..+++|+.|+|++|
T Consensus       151 ------------------------~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~N  205 (266)
T d1p9ag_         151 ------------------------EKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGN  205 (266)
T ss_dssp             ------------------------CEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSC
T ss_pred             ------------------------hhcccccccccccCccccccccccceeecccCCCc-ccChhHCCCCCCCEEEecCC
Confidence                                    88999999999888888999999999999999999 89999999999999999999


Q ss_pred             cCcc
Q 046398          665 QLSS  668 (794)
Q Consensus       665 ~l~~  668 (794)
                      ++..
T Consensus       206 p~~C  209 (266)
T d1p9ag_         206 PWLC  209 (266)
T ss_dssp             CBCC
T ss_pred             CCCC
Confidence            9875

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.80  E-value=2.9e-17  Score=173.26  Aligned_cols=138  Identities=18%  Similarity=0.205  Sum_probs=95.3

Q ss_pred             CCCCEEeCCCCCCCCCCCCcccCCCCCCCEEEcCCCCCCCCCcccccCCccccccccCccccccccccccccccCCCCcc
Q 046398          117 KHLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRCLDLSWSEYALQVHSFSWLSGQIPNRL  196 (794)
Q Consensus       117 ~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~~~~lp~~l  196 (794)
                      .++++|||+++.++  .+|+.   .++|++|+|++|+++ .+|+.+   .+|++|++++|.+.           .++.- 
T Consensus        38 ~~l~~LdLs~~~L~--~lp~~---~~~L~~L~Ls~N~l~-~lp~~~---~~L~~L~l~~n~l~-----------~l~~l-   96 (353)
T d1jl5a_          38 RQAHELELNNLGLS--SLPEL---PPHLESLVASCNSLT-ELPELP---QSLKSLLVDNNNLK-----------ALSDL-   96 (353)
T ss_dssp             HTCSEEECTTSCCS--CCCSC---CTTCSEEECCSSCCS-SCCCCC---TTCCEEECCSSCCS-----------CCCSC-
T ss_pred             cCCCEEEeCCCCCC--CCCCC---CCCCCEEECCCCCCc-ccccch---hhhhhhhhhhcccc-----------hhhhh-
Confidence            47899999999998  57864   568999999999998 678654   57888888887754           22211 


Q ss_pred             CCCCCCCEEECcCCCCCCCCCccccCCCCCCeEeeeccCCCCCCCccccCCCCCCcEEEccCCCCCCCCCchhhhccCCC
Q 046398          197 GNLTSLRHLDLSANKFNSTTAGWLSKFNHLEFLSLSSNGLQGTISSIGLENLTSIKTIDLSLNFELGGPIPTSFVRLCEL  276 (794)
Q Consensus       197 ~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L  276 (794)
                        .+.|++|++++|.+.....  ++.+++|++|+++++.+....     .....+..+.+...   ....+..+..++.+
T Consensus        97 --p~~L~~L~L~~n~l~~lp~--~~~l~~L~~L~l~~~~~~~~~-----~~~~~l~~l~~~~~---~~~~~~~l~~l~~l  164 (353)
T d1jl5a_          97 --PPLLEYLGVSNNQLEKLPE--LQNSSFLKIIDVDNNSLKKLP-----DLPPSLEFIAAGNN---QLEELPELQNLPFL  164 (353)
T ss_dssp             --CTTCCEEECCSSCCSSCCC--CTTCTTCCEEECCSSCCSCCC-----CCCTTCCEEECCSS---CCSSCCCCTTCTTC
T ss_pred             --ccccccccccccccccccc--hhhhccceeeccccccccccc-----cccccccchhhccc---cccccccccccccc
Confidence              1469999999999886543  678999999999998876332     23455666666522   12223344555556


Q ss_pred             CEEEccCCCCC
Q 046398          277 TSIDVSDVKLS  287 (794)
Q Consensus       277 ~~L~l~~~~l~  287 (794)
                      +.+++..+...
T Consensus       165 ~~L~l~~n~~~  175 (353)
T d1jl5a_         165 TAIYADNNSLK  175 (353)
T ss_dssp             CEEECCSSCCS
T ss_pred             eeccccccccc
Confidence            66666555443

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.77  E-value=2.9e-17  Score=173.30  Aligned_cols=303  Identities=23%  Similarity=0.263  Sum_probs=172.2

Q ss_pred             CccEEEeecccccccccccccCCCCCCEEEccCCcCcCCCCCCcCCCCCCCEEEccCCcccccCCccccCCCCCCeEecc
Q 046398          304 ALESLVFSSSQISGHLTSQLGQFKSLRTLSLDDNCISGPLPPALGDLSSLTRLDLSRNMLNGSIPLSLGKISHLEYLDLS  383 (794)
Q Consensus       304 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls  383 (794)
                      ++++|+|+++.++. +|+.   .++|++|++++|+++ .+|..   ..+|++|++++|.++ .++. +  .+.|++|+++
T Consensus        39 ~l~~LdLs~~~L~~-lp~~---~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~l~~n~l~-~l~~-l--p~~L~~L~L~  106 (353)
T d1jl5a_          39 QAHELELNNLGLSS-LPEL---PPHLESLVASCNSLT-ELPEL---PQSLKSLLVDNNNLK-ALSD-L--PPLLEYLGVS  106 (353)
T ss_dssp             TCSEEECTTSCCSC-CCSC---CTTCSEEECCSSCCS-SCCCC---CTTCCEEECCSSCCS-CCCS-C--CTTCCEEECC
T ss_pred             CCCEEEeCCCCCCC-CCCC---CCCCCEEECCCCCCc-ccccc---hhhhhhhhhhhcccc-hhhh-h--cccccccccc
Confidence            67777777777764 4432   457777777777777 45543   346777777777776 3332 1  1457777777


Q ss_pred             CcccccccChhhhcCCCCCCEEECcCCcceeEcCCCCcCccccceEecccccCCCCCCcccCCCCCCCEEeccCCCCCCC
Q 046398          384 NNKMNGTLSEIHFVNLTKLTWFSASGNSLILQVNPNWVPPFQLKTLLLMSCHLGPQFPSWLHSQKNLSVLDISNARISDT  463 (794)
Q Consensus       384 ~N~l~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~  463 (794)
                      +|.+. .+|.  +..+++|+.++++++.+....    .....+..+.+..+...  ....+..++.++.+++++|.....
T Consensus       107 ~n~l~-~lp~--~~~l~~L~~L~l~~~~~~~~~----~~~~~l~~l~~~~~~~~--~~~~l~~l~~l~~L~l~~n~~~~~  177 (353)
T d1jl5a_         107 NNQLE-KLPE--LQNSSFLKIIDVDNNSLKKLP----DLPPSLEFIAAGNNQLE--ELPELQNLPFLTAIYADNNSLKKL  177 (353)
T ss_dssp             SSCCS-SCCC--CTTCTTCCEEECCSSCCSCCC----CCCTTCCEEECCSSCCS--SCCCCTTCTTCCEEECCSSCCSSC
T ss_pred             ccccc-cccc--hhhhccceeeccccccccccc----cccccccchhhcccccc--ccccccccccceeccccccccccc
Confidence            77776 4553  456777777777777654322    12334555555554432  233456677777888877766541


Q ss_pred             cchhHHhccccceeccCcccCCCCCCCEEEccCCcccccCChhhhhcCCCCcEEEcccccccccCCccccCCCCCCEEEc
Q 046398          464 IPRWFWNSIFQLSGIIPESFKNFSNLEVLNLGDNEFVGKIPTWMGEGFTSLLILILRSNKFDGFLPIQLCRLTSLQILDV  543 (794)
Q Consensus       464 ~p~~~~~~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L  543 (794)
                                      +.   .....+.+...++.+. .++...  .++.|+.+++++|.... ++.   ...++..+++
T Consensus       178 ----------------~~---~~~~~~~l~~~~~~~~-~~~~~~--~l~~L~~l~l~~n~~~~-~~~---~~~~l~~~~~  231 (353)
T d1jl5a_         178 ----------------PD---LPLSLESIVAGNNILE-ELPELQ--NLPFLTTIYADNNLLKT-LPD---LPPSLEALNV  231 (353)
T ss_dssp             ----------------CC---CCTTCCEEECCSSCCS-SCCCCT--TCTTCCEEECCSSCCSS-CCS---CCTTCCEEEC
T ss_pred             ----------------cc---cccccccccccccccc-cccccc--ccccccccccccccccc-ccc---cccccccccc
Confidence                            11   1123344555555443 444322  46666666666666542 222   2345666666


Q ss_pred             cCCcCcccCCchhhccccccccccccCCCCcccccccccccccceeeEEEEeccchhhcccccceeEEEcCCCccccccC
Q 046398          544 ANNSLSGTMPGCVNNFSAMATIDSSHQSNAMSYFEVTAYDCEVLEDASIVMKGSMVEYNSILNLVRIIDVSKNNFSGEIP  623 (794)
Q Consensus       544 s~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip  623 (794)
                      .++.+... +.....+...........                             ............++..+.+.+. +
T Consensus       232 ~~~~~~~~-~~~~~~l~~~~~~~~~~~-----------------------------~l~~l~~~~~~~~~~~~~~~~~-~  280 (353)
T d1jl5a_         232 RDNYLTDL-PELPQSLTFLDVSENIFS-----------------------------GLSELPPNLYYLNASSNEIRSL-C  280 (353)
T ss_dssp             CSSCCSCC-CCCCTTCCEEECCSSCCS-----------------------------EESCCCTTCCEEECCSSCCSEE-C
T ss_pred             cccccccc-cccccccccccccccccc-----------------------------ccccccchhcccccccCccccc-c
Confidence            66665422 211111111100000000                             0000112235566777766632 2


Q ss_pred             hhhhcccCCCEEecccccccccCCccccccCCCCEEeCCCCcCcccCcccccCCCCCCEEeCcCCcccccCCC
Q 046398          624 MELTYLRGLQSLNLSHNIFTGQIPENIGNLISIESLDFSTNQLSSKISQSMSSLSFLNHLNVSNNLLTGKIPS  696 (794)
Q Consensus       624 ~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~  696 (794)
                         ..+++|++|+|++|+++ .+|..   +++|+.|+|++|+|+ .+|+.   +++|++|++++|+++ .+|.
T Consensus       281 ---~~~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~L~~N~L~-~l~~~---~~~L~~L~L~~N~L~-~lp~  341 (353)
T d1jl5a_         281 ---DLPPSLEELNVSNNKLI-ELPAL---PPRLERLIASFNHLA-EVPEL---PQNLKQLHVEYNPLR-EFPD  341 (353)
T ss_dssp             ---CCCTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCS-SCCC
T ss_pred             ---ccCCCCCEEECCCCccC-ccccc---cCCCCEEECCCCcCC-ccccc---cCCCCEEECcCCcCC-CCCc
Confidence               23578888888888888 67754   567888888888887 46643   457888899998887 5664

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=2.9e-20  Score=204.25  Aligned_cols=197  Identities=17%  Similarity=0.099  Sum_probs=118.0

Q ss_pred             CCCCCCCEEeccCCCCCCCcchhHHhccccceeccCcccCCCCCCCEEEccCCcccccCC----hhhhhcCCCCcEEEcc
Q 046398          445 HSQKNLSVLDISNARISDTIPRWFWNSIFQLSGIIPESFKNFSNLEVLNLGDNEFVGKIP----TWMGEGFTSLLILILR  520 (794)
Q Consensus       445 ~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip----~~~~~~l~~L~~L~L~  520 (794)
                      ...+.++.+++++|++.....          ....+........++.+++++|.+.....    ..+. ..+.++.++++
T Consensus       223 ~~~~~~~~l~~~~n~~~~~~~----------~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~-~~~~l~~l~l~  291 (460)
T d1z7xw1         223 ASKASLRELALGSNKLGDVGM----------AELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLR-AKESLKELSLA  291 (460)
T ss_dssp             HHCTTCCEEECCSSBCHHHHH----------HHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHH-HCTTCCEEECT
T ss_pred             cccccccccchhhcccccccc----------chhhccccccccccccccccccccccccccccccccc-ccccccccccc
Confidence            445667777777776543110          01122334455678888888877653221    1222 46777888888


Q ss_pred             cccccccCCccc-----cCCCCCCEEEccCCcCcccCCchhhccccccccccccCCCCcccccccccccccceeeEEEEe
Q 046398          521 SNKFDGFLPIQL-----CRLTSLQILDVANNSLSGTMPGCVNNFSAMATIDSSHQSNAMSYFEVTAYDCEVLEDASIVMK  595 (794)
Q Consensus       521 ~n~l~~~~p~~~-----~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  595 (794)
                      +|.++......+     .....|+.+++++|.++......+.+                                     
T Consensus       292 ~n~i~~~~~~~l~~~l~~~~~~L~~l~l~~~~l~~~~~~~l~~-------------------------------------  334 (460)
T d1z7xw1         292 GNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSS-------------------------------------  334 (460)
T ss_dssp             TCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHH-------------------------------------
T ss_pred             cccccccccchhhccccccccccccccccccchhhhhhhhccc-------------------------------------
Confidence            887754222111     23457888888888776332222211                                     


Q ss_pred             ccchhhcccccceeEEEcCCCccccc----cChhhh-cccCCCEEeccccccccc----CCccccccCCCCEEeCCCCcC
Q 046398          596 GSMVEYNSILNLVRIIDVSKNNFSGE----IPMELT-YLRGLQSLNLSHNIFTGQ----IPENIGNLISIESLDFSTNQL  666 (794)
Q Consensus       596 ~~~~~~~~~l~~L~~LdLs~N~l~~~----ip~~l~-~l~~L~~L~Ls~N~l~~~----ip~~l~~l~~L~~L~Ls~N~l  666 (794)
                           .....+.|+.|||++|++++.    +++.+. ..+.|++|+|++|.|+..    +++.+...++|++|||++|++
T Consensus       335 -----~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i  409 (460)
T d1z7xw1         335 -----VLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCL  409 (460)
T ss_dssp             -----HHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSC
T ss_pred             -----ccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHHHHHhcCCCCCEEECCCCcC
Confidence                 111234568888888888653    333333 356788889988888742    445566778888899998888


Q ss_pred             cccCcccc----c-CCCCCCEEeCcCCcccccC
Q 046398          667 SSKISQSM----S-SLSFLNHLNVSNNLLTGKI  694 (794)
Q Consensus       667 ~~~~p~~l----~-~l~~L~~L~ls~N~l~g~i  694 (794)
                      +......+    . +...|+.|++++|.+....
T Consensus       410 ~~~g~~~l~~~l~~~~~~L~~l~l~~~~~~~~~  442 (460)
T d1z7xw1         410 GDAGILQLVESVRQPGCLLEQLVLYDIYWSEEM  442 (460)
T ss_dssp             CHHHHHHHHHHHTSTTCCCCEEECTTCCCCHHH
T ss_pred             CHHHHHHHHHHHHhCCCccCEEECCCCCCCHHH
Confidence            76443333    2 3346888999888887543

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=5.4e-21  Score=210.18  Aligned_cols=399  Identities=21%  Similarity=0.191  Sum_probs=220.6

Q ss_pred             CCCEEeCCCCCCCCCCCCcccCCCCCCCEEEcCCCCCCC----CCcccccCCccccccccCccccccccccccccccCCC
Q 046398          118 HLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAG----IIPHQLGNLSNLRCLDLSWSEYALQVHSFSWLSGQIP  193 (794)
Q Consensus       118 ~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~----~~p~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~~~~lp  193 (794)
                      +|++||+++|++++..+.+.+..++++|+|+|++|.++.    .++..+..+++|++|||++|.+...  .+    ..+.
T Consensus         3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~--~~----~~l~   76 (460)
T d1z7xw1           3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDV--GV----HCVL   76 (460)
T ss_dssp             EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHH--HH----HHHH
T ss_pred             CCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChH--HH----HHHH
Confidence            688999999999875555666778999999999998874    2455677889999999998875310  00    0122


Q ss_pred             CccC-CCCCCCEEECcCCCCCCCC----CccccCCCCCCeEeeeccCCCCCCCcc---cc-CCCCCCcEEEccCCCCCCC
Q 046398          194 NRLG-NLTSLRHLDLSANKFNSTT----AGWLSKFNHLEFLSLSSNGLQGTISSI---GL-ENLTSIKTIDLSLNFELGG  264 (794)
Q Consensus       194 ~~l~-~l~~L~~L~Ls~n~l~~~~----~~~l~~l~~L~~L~L~~n~l~~~i~~~---~l-~~l~~L~~L~L~~~~~~~~  264 (794)
                      ..+. ..++|++|+|++|+++...    +..+..+++|++|++++|.+...-...   .+ .............. ....
T Consensus        77 ~~l~~~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~~~~~~~~~-~~~~  155 (460)
T d1z7xw1          77 QGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYC-SLSA  155 (460)
T ss_dssp             HTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCBG
T ss_pred             HHHhcCCCCCCEEECCCCCccccccccccchhhccccccccccccccchhhhhhhhhhccccccccccccccccc-ccch
Confidence            2222 2457999999999987653    345677889999999998875321110   01 11222333333311 1111


Q ss_pred             C----CchhhhccCCCCEEEccCCCCCcchHHHHHhhhhcCcCCccEEEeeccccccc----ccccccCCCCCCEEEccC
Q 046398          265 P----IPTSFVRLCELTSIDVSDVKLSQDLSQVLDILSACGASALESLVFSSSQISGH----LTSQLGQFKSLRTLSLDD  336 (794)
Q Consensus       265 ~----~~~~l~~l~~L~~L~l~~~~l~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~  336 (794)
                      .    ....+.....++.++++.+.............-.........+++..+.+...    ....+...+.++.+++.+
T Consensus       156 ~~~~~~~~~l~~~~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~  235 (460)
T d1z7xw1         156 ASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGS  235 (460)
T ss_dssp             GGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCS
T ss_pred             hhhcccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhcccccccccccccccchhh
Confidence            1    11224455677777777766543322222111111112445566655544321    112233455666666666


Q ss_pred             CcCcCC-----CCCCcCCCCCCCEEEccCCccccc----CCccccCCCCCCeEeccCcccccccChhhhcCCCCCCEEEC
Q 046398          337 NCISGP-----LPPALGDLSSLTRLDLSRNMLNGS----IPLSLGKISHLEYLDLSNNKMNGTLSEIHFVNLTKLTWFSA  407 (794)
Q Consensus       337 n~l~~~-----~p~~l~~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~l  407 (794)
                      |.+...     .+........++.+++++|.+...    ....+...+.++.+++++|.+...... .+..         
T Consensus       236 n~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~-~l~~---------  305 (460)
T d1z7xw1         236 NKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGAR-LLCE---------  305 (460)
T ss_dssp             SBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHH-HHHH---------
T ss_pred             ccccccccchhhcccccccccccccccccccccccccccccccccccccccccccccccccccccc-hhhc---------
Confidence            654321     111223345566666666655422    112233455666666666655421111 0000         


Q ss_pred             cCCcceeEcCCCCcCccccceEecccccCCCCC----CcccCCCCCCCEEeccCCCCCCCcchhHHhccccceeccCccc
Q 046398          408 SGNSLILQVNPNWVPPFQLKTLLLMSCHLGPQF----PSWLHSQKNLSVLDISNARISDTIPRWFWNSIFQLSGIIPESF  483 (794)
Q Consensus       408 s~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~----~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~l~~~~p~~l  483 (794)
                                ........|+.+++++|.++...    ...+...++|++|+|++|++++.....           +++.+
T Consensus       306 ----------~l~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~-----------l~~~l  364 (460)
T d1z7xw1         306 ----------TLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRE-----------LCQGL  364 (460)
T ss_dssp             ----------HHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHH-----------HHHHH
T ss_pred             ----------cccccccccccccccccchhhhhhhhcccccccccchhhhheeeecccCcccch-----------hhhhh
Confidence                      00011224555555555544332    223345567889999988876421111           22223


Q ss_pred             -CCCCCCCEEEccCCccccc----CChhhhhcCCCCcEEEcccccccccCCcc----cc-CCCCCCEEEccCCcCcccCC
Q 046398          484 -KNFSNLEVLNLGDNEFVGK----IPTWMGEGFTSLLILILRSNKFDGFLPIQ----LC-RLTSLQILDVANNSLSGTMP  553 (794)
Q Consensus       484 -~~l~~L~~L~Ls~n~l~~~----ip~~~~~~l~~L~~L~L~~n~l~~~~p~~----~~-~l~~L~~L~Ls~N~l~~~~p  553 (794)
                       ...+.|++|+|++|++++.    ++..+. .+++|++|+|++|+++......    +. +...|+.|++.+|.+.....
T Consensus       365 ~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~-~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~~~~~~~  443 (460)
T d1z7xw1         365 GQPGSVLRVLWLADCDVSDSSCSSLAATLL-ANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEME  443 (460)
T ss_dssp             TSTTCCCCEEECTTSCCCHHHHHHHHHHHH-HCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHHHH
T ss_pred             hcccCCCCEEECCCCCCChHHHHHHHHHHh-cCCCCCEEECCCCcCCHHHHHHHHHHHHhCCCccCEEECCCCCCCHHHH
Confidence             2456789999999988743    233333 5688999999999887543322    22 34579999999998875544


Q ss_pred             ch
Q 046398          554 GC  555 (794)
Q Consensus       554 ~~  555 (794)
                      ..
T Consensus       444 ~~  445 (460)
T d1z7xw1         444 DR  445 (460)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.69  E-value=3.6e-17  Score=155.94  Aligned_cols=169  Identities=18%  Similarity=0.245  Sum_probs=91.1

Q ss_pred             CEEEccCCcccccCChhhhhcCCCCcEEEcccccccccC-CccccCCCCCCEEEccCCcCcccCCchhhccccccccccc
Q 046398          490 EVLNLGDNEFVGKIPTWMGEGFTSLLILILRSNKFDGFL-PIQLCRLTSLQILDVANNSLSGTMPGCVNNFSAMATIDSS  568 (794)
Q Consensus       490 ~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~-p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~  568 (794)
                      +.++.++++++ ++|..+.   +++++|+|++|++++.+ +..|..+++|++|++++|++.+..+..+..+++|      
T Consensus        11 ~~v~Cs~~~L~-~iP~~lp---~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L------   80 (192)
T d1w8aa_          11 TTVDCTGRGLK-EIPRDIP---LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHI------   80 (192)
T ss_dssp             TEEECTTSCCS-SCCSCCC---TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTC------
T ss_pred             CEEEEeCCCcC-ccCCCCC---CCCCEEEeCCCCCcccccccccCCCceEeeeecccccccccccccccccccc------
Confidence            34555555555 4554332   35555555555555422 3445556666666666666655555544443333      


Q ss_pred             cCCCCcccccccccccccceeeEEEEeccchhhcccccceeEEEcCCCccccccChhhhcccCCCEEecccccccccCCc
Q 046398          569 HQSNAMSYFEVTAYDCEVLEDASIVMKGSMVEYNSILNLVRIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQIPE  648 (794)
Q Consensus       569 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~  648 (794)
                                                              +.|+|++|++++..|..|.++++|++|+|++|+|++..|+
T Consensus        81 ----------------------------------------~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~  120 (192)
T d1w8aa_          81 ----------------------------------------QELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPG  120 (192)
T ss_dssp             ----------------------------------------CEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTT
T ss_pred             ----------------------------------------ceeeeccccccccCHHHHhCCCcccccccCCccccccCHH
Confidence                                                    5566666666655555566666666666666666655556


Q ss_pred             cccccCCCCEEeCCCCcCcccCcccccCCCCCCEEeCcCCcccccCCCCCccCccCcccccCC
Q 046398          649 NIGNLISIESLDFSTNQLSSKISQSMSSLSFLNHLNVSNNLLTGKIPSSTQLQSFDASCFVGN  711 (794)
Q Consensus       649 ~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gn  711 (794)
                      .|..+++|++|+|++|.+....+... -...++.+.+..|.+++..|.  .++......+..|
T Consensus       121 ~f~~l~~L~~l~L~~N~~~~~~~~~~-~~~~l~~~~l~~~~~~c~~p~--~l~~~~l~~L~~n  180 (192)
T d1w8aa_         121 SFEHLNSLTSLNLASNPFNCNCHLAW-FAEWLRKKSLNGGAARCGAPS--KVRDVQIKDLPHS  180 (192)
T ss_dssp             SSTTCTTCCEEECTTCCBCCSGGGHH-HHHHHHHHCCSGGGCBBCSST--TTTTSBGGGSCTT
T ss_pred             HhcCCcccccccccccccccccchHH-HhhhhhhhcccCCCeEeCCCh--hhcCCEeeecCHh
Confidence            66666666666666666654332111 112244555566666655553  2333333334444

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.68  E-value=3.9e-16  Score=153.20  Aligned_cols=185  Identities=21%  Similarity=0.324  Sum_probs=125.6

Q ss_pred             ccceEecccccCCCCCCcccCCCCCCCEEeccCCCCCCCcchhHHhccccceeccCcccCCCCCCCEEEccCCcccccCC
Q 046398          425 QLKTLLLMSCHLGPQFPSWLHSQKNLSVLDISNARISDTIPRWFWNSIFQLSGIIPESFKNFSNLEVLNLGDNEFVGKIP  504 (794)
Q Consensus       425 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip  504 (794)
                      +|+.|.+.+|.+.. ++ .+..+++|++|++++|++++.                 ..+..+++|+++++++|.++ .++
T Consensus        42 ~L~~L~l~~~~i~~-l~-~l~~l~~L~~L~ls~n~i~~~-----------------~~l~~l~~l~~l~~~~n~~~-~i~  101 (227)
T d1h6ua2          42 GITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDL-----------------APLKNLTKITELELSGNPLK-NVS  101 (227)
T ss_dssp             TCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCC-----------------GGGTTCCSCCEEECCSCCCS-CCG
T ss_pred             CcCEEECCCCCCCc-ch-hHhcCCCCcEeecCCceeecc-----------------cccccccccccccccccccc-ccc
Confidence            33444444444432 22 356677777777777777652                 12567777777777777776 454


Q ss_pred             hhhhhcCCCCcEEEcccccccccCCccccCCCCCCEEEccCCcCcccCCchhhccccccccccccCCCCccccccccccc
Q 046398          505 TWMGEGFTSLLILILRSNKFDGFLPIQLCRLTSLQILDVANNSLSGTMPGCVNNFSAMATIDSSHQSNAMSYFEVTAYDC  584 (794)
Q Consensus       505 ~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~  584 (794)
                      . +. .+++|+.+++++|...+.  ..+...+.++.++++++.+....+  +.                           
T Consensus       102 ~-l~-~l~~L~~l~l~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~--~~---------------------------  148 (227)
T d1h6ua2         102 A-IA-GLQSIKTLDLTSTQITDV--TPLAGLSNLQVLYLDLNQITNISP--LA---------------------------  148 (227)
T ss_dssp             G-GT-TCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECCSSCCCCCGG--GG---------------------------
T ss_pred             c-cc-cccccccccccccccccc--chhccccchhhhhchhhhhchhhh--hc---------------------------
Confidence            3 33 577777777777776643  235566777777777776653221  11                           


Q ss_pred             ccceeeEEEEeccchhhcccccceeEEEcCCCccccccChhhhcccCCCEEecccccccccCCccccccCCCCEEeCCCC
Q 046398          585 EVLEDASIVMKGSMVEYNSILNLVRIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQIPENIGNLISIESLDFSTN  664 (794)
Q Consensus       585 ~~l~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N  664 (794)
                                         ..+.++.|++++|.+.+..  .++++++|++|+|++|++++ +|. ++++++|+.|+|++|
T Consensus       149 -------------------~~~~L~~L~l~~n~~~~~~--~l~~l~~L~~L~Ls~n~l~~-l~~-l~~l~~L~~L~Ls~N  205 (227)
T d1h6ua2         149 -------------------GLTNLQYLSIGNAQVSDLT--PLANLSKLTTLKADDNKISD-ISP-LASLPNLIEVHLKNN  205 (227)
T ss_dssp             -------------------GCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCC-CGG-GGGCTTCCEEECTTS
T ss_pred             -------------------cccccccccccccccccch--hhcccccceecccCCCccCC-Chh-hcCCCCCCEEECcCC
Confidence                               2334588888888887433  37888999999999999984 443 888999999999999


Q ss_pred             cCcccCcccccCCCCCCEEeCcC
Q 046398          665 QLSSKISQSMSSLSFLNHLNVSN  687 (794)
Q Consensus       665 ~l~~~~p~~l~~l~~L~~L~ls~  687 (794)
                      ++++..|  ++++++|+.|++++
T Consensus       206 ~lt~i~~--l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         206 QISDVSP--LANTSNLFIVTLTN  226 (227)
T ss_dssp             CCCBCGG--GTTCTTCCEEEEEE
T ss_pred             cCCCCcc--cccCCCCCEEEeeC
Confidence            9986543  78899999999874

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=1.7e-16  Score=157.66  Aligned_cols=73  Identities=19%  Similarity=0.242  Sum_probs=34.9

Q ss_pred             CEEEccCCcCcCCCCCCcCCCCCCCEEEccCCcccccCCccccCCCCCCeEeccCcccccccChhhhcCCCCCCEE
Q 046398          330 RTLSLDDNCISGPLPPALGDLSSLTRLDLSRNMLNGSIPLSLGKISHLEYLDLSNNKMNGTLSEIHFVNLTKLTWF  405 (794)
Q Consensus       330 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L  405 (794)
                      +.++.++..++ .+|..+.  +++++|++++|.++...+..|.++++|++|++++|.+...++...|.++++++.+
T Consensus        11 ~~i~c~~~~l~-~iP~~l~--~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l   83 (242)
T d1xwdc1          11 RVFLCQESKVT-EIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEI   83 (242)
T ss_dssp             SEEEEESCSCS-SCCSCSC--SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEE
T ss_pred             CEEEEeCCCCC-CcCCCCC--CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccc
Confidence            34444444444 3443331  3455566666655533333455555666666666555444443334444433333

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.67  E-value=4.9e-16  Score=152.50  Aligned_cols=191  Identities=25%  Similarity=0.371  Sum_probs=116.3

Q ss_pred             cccCCCCCCEEeCCCCCCCCCCCCcccCCCCCCCEEEcCCCCCCCCCcccccCCccccccccCccccccccccccccccC
Q 046398          112 SLVDLKHLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRCLDLSWSEYALQVHSFSWLSGQ  191 (794)
Q Consensus       112 ~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~~~~  191 (794)
                      .+.++.+|++|++.+|+++.  + +.+..+++|++|++++|.+++..|  +.++++|+++++++|...           .
T Consensus        36 ~~~~l~~L~~L~l~~~~i~~--l-~~l~~l~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~~~n~~~-----------~   99 (227)
T d1h6ua2          36 TQADLDGITTLSAFGTGVTT--I-EGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLK-----------N   99 (227)
T ss_dssp             CHHHHHTCCEEECTTSCCCC--C-TTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCS-----------C
T ss_pred             CHHHcCCcCEEECCCCCCCc--c-hhHhcCCCCcEeecCCceeecccc--cccccccccccccccccc-----------c
Confidence            34567777888888887773  4 346777788888888877775433  667777777777665533           2


Q ss_pred             CCCccCCCCCCCEEECcCCCCCCCCCccccCCCCCCeEeeeccCCCCCCCccccCCCCCCcEEEccCCCCCCCCCchhhh
Q 046398          192 IPNRLGNLTSLRHLDLSANKFNSTTAGWLSKFNHLEFLSLSSNGLQGTISSIGLENLTSIKTIDLSLNFELGGPIPTSFV  271 (794)
Q Consensus       192 lp~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~~~~~~~~~~~~l~  271 (794)
                      + ..+.++++|+.++++++...+..+  +...+.++.+.++.+.+...                            ..+.
T Consensus       100 i-~~l~~l~~L~~l~l~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~----------------------------~~~~  148 (227)
T d1h6ua2         100 V-SAIAGLQSIKTLDLTSTQITDVTP--LAGLSNLQVLYLDLNQITNI----------------------------SPLA  148 (227)
T ss_dssp             C-GGGTTCTTCCEEECTTSCCCCCGG--GTTCTTCCEEECCSSCCCCC----------------------------GGGG
T ss_pred             c-ccccccccccccccccccccccch--hccccchhhhhchhhhhchh----------------------------hhhc
Confidence            2 235566666666666665544322  44455555555555554321                            1233


Q ss_pred             ccCCCCEEEccCCCCCcchHHHHHhhhhcCcCCccEEEeecccccccccccccCCCCCCEEEccCCcCcCCCCCCcCCCC
Q 046398          272 RLCELTSIDVSDVKLSQDLSQVLDILSACGASALESLVFSSSQISGHLTSQLGQFKSLRTLSLDDNCISGPLPPALGDLS  351 (794)
Q Consensus       272 ~l~~L~~L~l~~~~l~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~  351 (794)
                      ..++|+.|++++|.+.+..+  +.     .+++|++|++++|++++. + .++.+++|++|++++|++++. + .+++++
T Consensus       149 ~~~~L~~L~l~~n~~~~~~~--l~-----~l~~L~~L~Ls~n~l~~l-~-~l~~l~~L~~L~Ls~N~lt~i-~-~l~~l~  217 (227)
T d1h6ua2         149 GLTNLQYLSIGNAQVSDLTP--LA-----NLSKLTTLKADDNKISDI-S-PLASLPNLIEVHLKNNQISDV-S-PLANTS  217 (227)
T ss_dssp             GCTTCCEEECCSSCCCCCGG--GT-----TCTTCCEEECCSSCCCCC-G-GGGGCTTCCEEECTTSCCCBC-G-GGTTCT
T ss_pred             cccccccccccccccccchh--hc-----ccccceecccCCCccCCC-h-hhcCCCCCCEEECcCCcCCCC-c-ccccCC
Confidence            44445555555554443221  22     223667777777766653 2 367788888888888888754 3 277888


Q ss_pred             CCCEEEccC
Q 046398          352 SLTRLDLSR  360 (794)
Q Consensus       352 ~L~~L~Ls~  360 (794)
                      +|++|++++
T Consensus       218 ~L~~L~lsn  226 (227)
T d1h6ua2         218 NLFIVTLTN  226 (227)
T ss_dssp             TCCEEEEEE
T ss_pred             CCCEEEeeC
Confidence            888888863

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.66  E-value=9.9e-17  Score=152.84  Aligned_cols=178  Identities=16%  Similarity=0.169  Sum_probs=118.7

Q ss_pred             CCEEeccCCCCCCCcchhHHhccccceeccCcccCCCCCCCEEEccCCcccccCChhhhhcCCCCcEEEcccccccccCC
Q 046398          450 LSVLDISNARISDTIPRWFWNSIFQLSGIIPESFKNFSNLEVLNLGDNEFVGKIPTWMGEGFTSLLILILRSNKFDGFLP  529 (794)
Q Consensus       450 L~~L~Ls~n~l~~~~p~~~~~~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p  529 (794)
                      .+.++.++++++.                +|..+.  +++++|+|++|+|++.++...+.++++|+.|+|++|++.+..+
T Consensus        10 ~~~v~Cs~~~L~~----------------iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~   71 (192)
T d1w8aa_          10 GTTVDCTGRGLKE----------------IPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEP   71 (192)
T ss_dssp             TTEEECTTSCCSS----------------CCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCT
T ss_pred             CCEEEEeCCCcCc----------------cCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccc
Confidence            4677777777764                444432  5677777887777655655555567777778887777777777


Q ss_pred             ccccCCCCCCEEEccCCcCcccCCchhhccccccccccccCCCCcccccccccccccceeeEEEEeccchhhccccccee
Q 046398          530 IQLCRLTSLQILDVANNSLSGTMPGCVNNFSAMATIDSSHQSNAMSYFEVTAYDCEVLEDASIVMKGSMVEYNSILNLVR  609 (794)
Q Consensus       530 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~  609 (794)
                      ..+..+++|++|+|++|++++..|..|.++++|                                              +
T Consensus        72 ~~~~~~~~L~~L~Ls~N~l~~l~~~~F~~l~~L----------------------------------------------~  105 (192)
T d1w8aa_          72 NAFEGASHIQELQLGENKIKEISNKMFLGLHQL----------------------------------------------K  105 (192)
T ss_dssp             TTTTTCTTCCEEECCSCCCCEECSSSSTTCTTC----------------------------------------------C
T ss_pred             cccccccccceeeeccccccccCHHHHhCCCcc----------------------------------------------c
Confidence            777777777788888777776666666655544                                              6


Q ss_pred             EEEcCCCccccccChhhhcccCCCEEecccccccccCCccccccCCCCEEeCCCCcCcccCcccccCCCCCCEEeCcCCc
Q 046398          610 IIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQIPENIGNLISIESLDFSTNQLSSKISQSMSSLSFLNHLNVSNNL  689 (794)
Q Consensus       610 ~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~  689 (794)
                      .|+|++|+|++..|..|..+++|++|+|++|.+....+ ...-...++.+.+..|.+....|..+   ..++.++|+.|.
T Consensus       106 ~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~-~~~~~~~l~~~~l~~~~~~c~~p~~l---~~~~l~~L~~n~  181 (192)
T d1w8aa_         106 TLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH-LAWFAEWLRKKSLNGGAARCGAPSKV---RDVQIKDLPHSE  181 (192)
T ss_dssp             EEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG-GHHHHHHHHHHCCSGGGCBBCSSTTT---TTSBGGGSCTTT
T ss_pred             ccccCCccccccCHHHhcCCcccccccccccccccccc-hHHHhhhhhhhcccCCCeEeCCChhh---cCCEeeecCHhh
Confidence            77777777777667777777777778877777763322 11112335556667777776666543   345566777777


Q ss_pred             ccccCC
Q 046398          690 LTGKIP  695 (794)
Q Consensus       690 l~g~iP  695 (794)
                      +...-|
T Consensus       182 l~C~~~  187 (192)
T d1w8aa_         182 FKCSSE  187 (192)
T ss_dssp             CCCCCC
T ss_pred             CcCCCC
Confidence            765433

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=1e-16  Score=159.32  Aligned_cols=197  Identities=19%  Similarity=0.144  Sum_probs=95.1

Q ss_pred             CCCEEECcCCCCCCCCCccccCCCCCCeEeeeccCCCCCCCccccCCCCCCcEEEccCCCCCCCCCchhhhccCCCCEEE
Q 046398          201 SLRHLDLSANKFNSTTAGWLSKFNHLEFLSLSSNGLQGTISSIGLENLTSIKTIDLSLNFELGGPIPTSFVRLCELTSID  280 (794)
Q Consensus       201 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~  280 (794)
                      ++++|++++|+++...+..|.++++|++|++++|.+...++...+.++++++++.+...+.+....+..+..+++|+.++
T Consensus        30 ~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l~  109 (242)
T d1xwdc1          30 NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLL  109 (242)
T ss_dssp             CCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCEEE
T ss_pred             CCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccccccccccccccccccccccccc
Confidence            45555555555555555555555566666666555554444445555566666555434444444445555555555555


Q ss_pred             ccCCCCCcchHHHHHhhhhcCcCCccEEEeecccccccccccccCCC-CCCEEEccCCcCcCCCCCCcCCCCCCCEE-Ec
Q 046398          281 VSDVKLSQDLSQVLDILSACGASALESLVFSSSQISGHLTSQLGQFK-SLRTLSLDDNCISGPLPPALGDLSSLTRL-DL  358 (794)
Q Consensus       281 l~~~~l~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~-~L~~L~L~~n~l~~~~p~~l~~l~~L~~L-~L  358 (794)
                      ++++.+....+..  .+  .....+..+...++.+....+..+..++ .++.|++++|+++...+..+ ...+++++ ++
T Consensus       110 l~~~~l~~~~~~~--~~--~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~i~~~~~-~~~~l~~~~~l  184 (242)
T d1xwdc1         110 ISNTGIKHLPDVH--KI--HSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAF-NGTQLDELNLS  184 (242)
T ss_dssp             EESCCCCSCCCCT--TT--CBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTTT-TTCCEEEEECT
T ss_pred             cchhhhccccccc--cc--ccccccccccccccccccccccccccccccceeeecccccccccccccc-cchhhhccccc
Confidence            5555544321100  00  0111333444444445444444444432 55556666666653333322 23333333 34


Q ss_pred             cCCcccccCCccccCCCCCCeEeccCcccccccChhhhcCCCCCC
Q 046398          359 SRNMLNGSIPLSLGKISHLEYLDLSNNKMNGTLSEIHFVNLTKLT  403 (794)
Q Consensus       359 s~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~  403 (794)
                      ++|+++...+..|.++++|++|++++|+++ .+|...|.++++|+
T Consensus       185 ~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~-~l~~~~~~~l~~L~  228 (242)
T d1xwdc1         185 DNNNLEELPNDVFHGASGPVILDISRTRIH-SLPSYGLENLKKLR  228 (242)
T ss_dssp             TCTTCCCCCTTTTTTSCCCSEEECTTSCCC-CCCSSSCTTCCEEE
T ss_pred             cccccccccHHHhcCCCCCCEEECCCCcCC-ccCHHHHcCCcccc
Confidence            555555333334555666666666666655 44443444444333

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.63  E-value=2.9e-15  Score=144.64  Aligned_cols=165  Identities=22%  Similarity=0.349  Sum_probs=127.4

Q ss_pred             CCCCCEEeccCCCCCCCcchhHHhccccceeccCcccCCCCCCCEEEccCCcccccCChhhhhcCCCCcEEEcccccccc
Q 046398          447 QKNLSVLDISNARISDTIPRWFWNSIFQLSGIIPESFKNFSNLEVLNLGDNEFVGKIPTWMGEGFTSLLILILRSNKFDG  526 (794)
Q Consensus       447 l~~L~~L~Ls~n~l~~~~p~~~~~~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~  526 (794)
                      +.+|++|++++|.+++                + ..+..+++|++|++++|++++ ++. +. .+++|+.|++++|++++
T Consensus        45 L~~L~~L~l~~~~i~~----------------l-~~l~~l~~L~~L~L~~n~i~~-l~~-~~-~l~~L~~L~l~~n~i~~  104 (210)
T d1h6ta2          45 LNSIDQIIANNSDIKS----------------V-QGIQYLPNVTKLFLNGNKLTD-IKP-LA-NLKNLGWLFLDENKVKD  104 (210)
T ss_dssp             HHTCCEEECTTSCCCC----------------C-TTGGGCTTCCEEECCSSCCCC-CGG-GT-TCTTCCEEECCSSCCCC
T ss_pred             hcCccEEECcCCCCCC----------------c-hhHhhCCCCCEEeCCCccccC-ccc-cc-cCccccccccccccccc
Confidence            4578888888888775                2 236678889999999998884 553 33 68899999999998875


Q ss_pred             cCCccccCCCCCCEEEccCCcCcccCCchhhccccccccccccCCCCcccccccccccccceeeEEEEeccchhhccccc
Q 046398          527 FLPIQLCRLTSLQILDVANNSLSGTMPGCVNNFSAMATIDSSHQSNAMSYFEVTAYDCEVLEDASIVMKGSMVEYNSILN  606 (794)
Q Consensus       527 ~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~  606 (794)
                       +| .+..+++|+.|++++|.+.. ++ .+..                                              ++
T Consensus       105 -l~-~l~~l~~L~~L~l~~~~~~~-~~-~l~~----------------------------------------------l~  134 (210)
T d1h6ta2         105 -LS-SLKDLKKLKSLSLEHNGISD-IN-GLVH----------------------------------------------LP  134 (210)
T ss_dssp             -GG-GGTTCTTCCEEECTTSCCCC-CG-GGGG----------------------------------------------CT
T ss_pred             -cc-cccccccccccccccccccc-cc-cccc----------------------------------------------cc
Confidence             33 57888999999999988752 11 2222                                              33


Q ss_pred             ceeEEEcCCCccccccChhhhcccCCCEEecccccccccCCccccccCCCCEEeCCCCcCcccCcccccCCCCCCEEeCc
Q 046398          607 LVRIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQIPENIGNLISIESLDFSTNQLSSKISQSMSSLSFLNHLNVS  686 (794)
Q Consensus       607 ~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls  686 (794)
                      .++.+++++|.+++  +..+..+++|+.+++++|++++ ++ .++++++|+.|+|++|+++. +| .+.++++|++|+|+
T Consensus       135 ~l~~l~~~~n~l~~--~~~~~~l~~L~~l~l~~n~l~~-i~-~l~~l~~L~~L~Ls~N~i~~-l~-~l~~l~~L~~L~Ls  208 (210)
T d1h6ta2         135 QLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISD-IV-PLAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELF  208 (210)
T ss_dssp             TCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEE
T ss_pred             cccccccccccccc--cccccccccccccccccccccc-cc-cccCCCCCCEEECCCCCCCC-Ch-hhcCCCCCCEEEcc
Confidence            44888999999874  3457789999999999999985 44 38899999999999999985 55 58999999999987


Q ss_pred             C
Q 046398          687 N  687 (794)
Q Consensus       687 ~  687 (794)
                      +
T Consensus       209 ~  209 (210)
T d1h6ta2         209 S  209 (210)
T ss_dssp             E
T ss_pred             C
Confidence            4

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.62  E-value=2.9e-15  Score=144.70  Aligned_cols=163  Identities=20%  Similarity=0.313  Sum_probs=121.9

Q ss_pred             ccceEecccccCCCCCCcccCCCCCCCEEeccCCCCCCCcchhHHhccccceeccCcccCCCCCCCEEEccCCcccccCC
Q 046398          425 QLKTLLLMSCHLGPQFPSWLHSQKNLSVLDISNARISDTIPRWFWNSIFQLSGIIPESFKNFSNLEVLNLGDNEFVGKIP  504 (794)
Q Consensus       425 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip  504 (794)
                      +|+.|++++|.+....  .+..+++|++|++++|++++                ++ .+..+++|++|++++|+++ .+|
T Consensus        47 ~L~~L~l~~~~i~~l~--~l~~l~~L~~L~L~~n~i~~----------------l~-~~~~l~~L~~L~l~~n~i~-~l~  106 (210)
T d1h6ta2          47 SIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTD----------------IK-PLANLKNLGWLFLDENKVK-DLS  106 (210)
T ss_dssp             TCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCC----------------CG-GGTTCTTCCEEECCSSCCC-CGG
T ss_pred             CccEEECcCCCCCCch--hHhhCCCCCEEeCCCccccC----------------cc-ccccCcccccccccccccc-ccc
Confidence            4444555555444322  25678889999999998876                22 3567889999999999987 566


Q ss_pred             hhhhhcCCCCcEEEcccccccccCCccccCCCCCCEEEccCCcCcccCCchhhccccccccccccCCCCccccccccccc
Q 046398          505 TWMGEGFTSLLILILRSNKFDGFLPIQLCRLTSLQILDVANNSLSGTMPGCVNNFSAMATIDSSHQSNAMSYFEVTAYDC  584 (794)
Q Consensus       505 ~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~  584 (794)
                      . +. .+++|+.|++++|.+...  ..+..+++++.+++++|.+++.  ..+..                          
T Consensus       107 ~-l~-~l~~L~~L~l~~~~~~~~--~~l~~l~~l~~l~~~~n~l~~~--~~~~~--------------------------  154 (210)
T d1h6ta2         107 S-LK-DLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSR--------------------------  154 (210)
T ss_dssp             G-GT-TCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGG--------------------------
T ss_pred             c-cc-cccccccccccccccccc--cccccccccccccccccccccc--ccccc--------------------------
Confidence            4 33 689999999999988642  4678889999999999988632  12222                          


Q ss_pred             ccceeeEEEEeccchhhcccccceeEEEcCCCccccccChhhhcccCCCEEecccccccccCCccccccCCCCEEeCCC
Q 046398          585 EVLEDASIVMKGSMVEYNSILNLVRIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQIPENIGNLISIESLDFST  663 (794)
Q Consensus       585 ~~l~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~  663 (794)
                                          ++.|+.+++++|++++. + .+.++++|++|+|++|+++ .+| .+.++++|+.|+|++
T Consensus       155 --------------------l~~L~~l~l~~n~l~~i-~-~l~~l~~L~~L~Ls~N~i~-~l~-~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         155 --------------------LTKLDTLSLEDNQISDI-V-PLAGLTKLQNLYLSKNHIS-DLR-ALAGLKNLDVLELFS  209 (210)
T ss_dssp             --------------------CTTCSEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCC-BCG-GGTTCTTCSEEEEEE
T ss_pred             --------------------ccccccccccccccccc-c-cccCCCCCCEEECCCCCCC-CCh-hhcCCCCCCEEEccC
Confidence                                34458899999999853 3 3889999999999999998 465 589999999999874

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.61  E-value=4.2e-15  Score=142.26  Aligned_cols=162  Identities=28%  Similarity=0.438  Sum_probs=102.8

Q ss_pred             CCCCCCEEeccCCCCCCCcchhHHhccccceeccCcccCCCCCCCEEEccCCcccccCChhhhhcCCCCcEEEccccccc
Q 046398          446 SQKNLSVLDISNARISDTIPRWFWNSIFQLSGIIPESFKNFSNLEVLNLGDNEFVGKIPTWMGEGFTSLLILILRSNKFD  525 (794)
Q Consensus       446 ~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~  525 (794)
                      .+.++++|++++|.++.                + +.+..+++|++|++++|++++ ++. +. ++++|+.|++++|.+.
T Consensus        38 ~l~~l~~L~l~~~~i~~----------------l-~~l~~l~nL~~L~Ls~N~l~~-~~~-l~-~l~~L~~L~l~~n~~~   97 (199)
T d2omxa2          38 DLDQVTTLQADRLGIKS----------------I-DGVEYLNNLTQINFSNNQLTD-ITP-LK-NLTKLVDILMNNNQIA   97 (199)
T ss_dssp             HHTTCCEEECTTSCCCC----------------C-TTGGGCTTCCEEECCSSCCCC-CGG-GT-TCTTCCEEECCSSCCC
T ss_pred             HhcCCCEEECCCCCCCC----------------c-cccccCCCcCcCccccccccC-ccc-cc-CCcccccccccccccc
Confidence            34567777777776654                1 235566777777777777763 333 33 5777777777777766


Q ss_pred             ccCCccccCCCCCCEEEccCCcCcccCCchhhccccccccccccCCCCcccccccccccccceeeEEEEeccchhhcccc
Q 046398          526 GFLPIQLCRLTSLQILDVANNSLSGTMPGCVNNFSAMATIDSSHQSNAMSYFEVTAYDCEVLEDASIVMKGSMVEYNSIL  605 (794)
Q Consensus       526 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l  605 (794)
                      .. + .+..+++|+.|++++|.+....  .+..                                              +
T Consensus        98 ~~-~-~l~~l~~L~~L~l~~~~~~~~~--~~~~----------------------------------------------l  127 (199)
T d2omxa2          98 DI-T-PLANLTNLTGLTLFNNQITDID--PLKN----------------------------------------------L  127 (199)
T ss_dssp             CC-G-GGTTCTTCSEEECCSSCCCCCG--GGTT----------------------------------------------C
T ss_pred             cc-c-cccccccccccccccccccccc--ccch----------------------------------------------h
Confidence            43 2 3667777777777777665321  1222                                              2


Q ss_pred             cceeEEEcCCCccccccChhhhcccCCCEEecccccccccCCccccccCCCCEEeCCCCcCcccCcccccCCCCCCEE
Q 046398          606 NLVRIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQIPENIGNLISIESLDFSTNQLSSKISQSMSSLSFLNHL  683 (794)
Q Consensus       606 ~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L  683 (794)
                      +.|+.|++++|++.. ++ .+..+++|+.|++++|++++. + .++++++|+.|++++|++++ ++ .++.+++|++|
T Consensus       128 ~~L~~L~l~~n~l~~-~~-~l~~~~~L~~L~l~~n~l~~l-~-~l~~l~~L~~L~ls~N~i~~-i~-~l~~L~~L~~L  199 (199)
T d2omxa2         128 TNLNRLELSSNTISD-IS-ALSGLTSLQQLNFSSNQVTDL-K-PLANLTTLERLDISSNKVSD-IS-VLAKLTNLESL  199 (199)
T ss_dssp             TTCSEEECCSSCCCC-CG-GGTTCTTCSEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCCC-CG-GGGGCTTCSEE
T ss_pred             hhhHHhhhhhhhhcc-cc-cccccccccccccccccccCC-c-cccCCCCCCEEECCCCCCCC-Cc-cccCCCCCCcC
Confidence            334677777777753 33 466777777777777777743 3 36777777777777777765 33 46677777664

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.57  E-value=1.4e-14  Score=138.45  Aligned_cols=160  Identities=29%  Similarity=0.396  Sum_probs=106.4

Q ss_pred             ccccccceeecccccCCCCCCEEeCCCCCCCCCCCCcccCCCCCCCEEEcCCCCCCCCCcccccCCccccccccCccccc
Q 046398          100 YMRSMLSGNVNPSLVDLKHLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRCLDLSWSEYA  179 (794)
Q Consensus       100 ~~~~~l~g~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~~~~~  179 (794)
                      +.++.+++.+.  ..+++++++|++++|.++.  + +.+..+++|++|++++|++++..|  ++++++|++|++++|...
T Consensus        25 l~~~~~~~~~~--~~~l~~l~~L~l~~~~i~~--l-~~l~~l~nL~~L~Ls~N~l~~~~~--l~~l~~L~~L~l~~n~~~   97 (199)
T d2omxa2          25 LGKTNVTDTVS--QTDLDQVTTLQADRLGIKS--I-DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIA   97 (199)
T ss_dssp             TTCSSTTSEEC--HHHHTTCCEEECTTSCCCC--C-TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred             hCCCCCCCccC--HHHhcCCCEEECCCCCCCC--c-cccccCCCcCcCccccccccCccc--ccCCcccccccccccccc
Confidence            33445555443  3567889999999998884  3 347788999999999999886433  888888999998877653


Q ss_pred             cccccccccccCCCCccCCCCCCCEEECcCCCCCCCCCccccCCCCCCeEeeeccCCCCCCCccccCCCCCCcEEEccCC
Q 046398          180 LQVHSFSWLSGQIPNRLGNLTSLRHLDLSANKFNSTTAGWLSKFNHLEFLSLSSNGLQGTISSIGLENLTSIKTIDLSLN  259 (794)
Q Consensus       180 ~~~~~~~~~~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~~  259 (794)
                                 .++ .+.++++|++|++++|.+....  .+..+++|+.|++++|.+.. ++  .+..+++|++|++. +
T Consensus        98 -----------~~~-~l~~l~~L~~L~l~~~~~~~~~--~~~~l~~L~~L~l~~n~l~~-~~--~l~~~~~L~~L~l~-~  159 (199)
T d2omxa2          98 -----------DIT-PLANLTNLTGLTLFNNQITDID--PLKNLTNLNRLELSSNTISD-IS--ALSGLTSLQQLNFS-S  159 (199)
T ss_dssp             -----------CCG-GGTTCTTCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCCC-CG--GGTTCTTCSEEECC-S
T ss_pred             -----------ccc-cccccccccccccccccccccc--ccchhhhhHHhhhhhhhhcc-cc--cccccccccccccc-c
Confidence                       333 4778888888888888776543  36777888888888887652 22  35666666666666 3


Q ss_pred             CCCCCCCchhhhccCCCCEEEccCCCC
Q 046398          260 FELGGPIPTSFVRLCELTSIDVSDVKL  286 (794)
Q Consensus       260 ~~~~~~~~~~l~~l~~L~~L~l~~~~l  286 (794)
                      +.+++.  ..+.++++|+.|++++|++
T Consensus       160 n~l~~l--~~l~~l~~L~~L~ls~N~i  184 (199)
T d2omxa2         160 NQVTDL--KPLANLTTLERLDISSNKV  184 (199)
T ss_dssp             SCCCCC--GGGTTCTTCCEEECCSSCC
T ss_pred             ccccCC--ccccCCCCCCEEECCCCCC
Confidence            344332  1244444444444444433

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=8.1e-15  Score=148.62  Aligned_cols=180  Identities=22%  Similarity=0.243  Sum_probs=91.1

Q ss_pred             CCCEEECcCCCCCCCC-CccccCCCCCCeEeeeccCCCCCCCccccCCCCCCcEEEccCCCCCCCCC-chhhhccCCCCE
Q 046398          201 SLRHLDLSANKFNSTT-AGWLSKFNHLEFLSLSSNGLQGTISSIGLENLTSIKTIDLSLNFELGGPI-PTSFVRLCELTS  278 (794)
Q Consensus       201 ~L~~L~Ls~n~l~~~~-~~~l~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~~~~~~~~~-~~~l~~l~~L~~  278 (794)
                      +|++||++++.++... ...+..+++|++|+++++.+++.... .+..+++|++|+++++..++... ......+++|+.
T Consensus        47 ~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~-~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~  125 (284)
T d2astb2          47 RVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVN-TLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDE  125 (284)
T ss_dssp             CCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHH-HHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCE
T ss_pred             CCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHH-HHhcCCCCcCccccccccccccccchhhHHHHhccc
Confidence            4444444444433221 22234444444444444444333222 34444555555554333333211 112334566666


Q ss_pred             EEccCCC-CCcch-HHHHHhhhhcCcCCccEEEeecc--ccccc-ccccccCCCCCCEEEccCC-cCcCCCCCCcCCCCC
Q 046398          279 IDVSDVK-LSQDL-SQVLDILSACGASALESLVFSSS--QISGH-LTSQLGQFKSLRTLSLDDN-CISGPLPPALGDLSS  352 (794)
Q Consensus       279 L~l~~~~-l~~~~-~~~l~~l~~~~~~~L~~L~L~~n--~l~~~-~~~~l~~l~~L~~L~L~~n-~l~~~~p~~l~~l~~  352 (794)
                      |+++++. +++.. ...+..    ..+.|+.|+++++  .++.. +......+++|++|++++| .+++.....+..+++
T Consensus       126 L~ls~c~~~~~~~~~~~~~~----~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~  201 (284)
T d2astb2         126 LNLSWCFDFTEKHVQVAVAH----VSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNY  201 (284)
T ss_dssp             EECCCCTTCCHHHHHHHHHH----SCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTT
T ss_pred             cccccccccccccchhhhcc----cccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCc
Confidence            6666642 32211 111111    1236777777654  23322 2222345677777777775 355555566677777


Q ss_pred             CCEEEccCC-cccccCCccccCCCCCCeEeccCc
Q 046398          353 LTRLDLSRN-MLNGSIPLSLGKISHLEYLDLSNN  385 (794)
Q Consensus       353 L~~L~Ls~n-~l~~~~p~~l~~l~~L~~L~Ls~N  385 (794)
                      |++|++++| .+++.....++++++|++|+++++
T Consensus       202 L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         202 LQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             CCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             CCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence            788887774 465555556677777888877776

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=1.1e-14  Score=147.77  Aligned_cols=59  Identities=19%  Similarity=0.170  Sum_probs=34.3

Q ss_pred             cceeEEEcCCC-ccccccChhhhcccCCCEEecccc-cccccCCccccccCCCCEEeCCCC
Q 046398          606 NLVRIIDVSKN-NFSGEIPMELTYLRGLQSLNLSHN-IFTGQIPENIGNLISIESLDFSTN  664 (794)
Q Consensus       606 ~~L~~LdLs~N-~l~~~ip~~l~~l~~L~~L~Ls~N-~l~~~ip~~l~~l~~L~~L~Ls~N  664 (794)
                      ++|+.||+++| .+++..+..+.++++|++|+|++| .+++.....++++++|+.|+++++
T Consensus       175 ~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         175 PNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             TTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             ccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence            44566666654 355555555666666666666663 455554555566666666666665

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.46  E-value=7.3e-14  Score=121.50  Aligned_cols=102  Identities=25%  Similarity=0.296  Sum_probs=83.8

Q ss_pred             CEEeCCCCCCCCCCCCcccCCCCCCCEEEcCCCCCCCCCcccccCCccccccccCccccccccccccccccCCCCccCCC
Q 046398          120 THLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRCLDLSWSEYALQVHSFSWLSGQIPNRLGNL  199 (794)
Q Consensus       120 ~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~~~~lp~~l~~l  199 (794)
                      |+|+|++|+++.  ++ .++.+++|++|++++|+++ .+|+.++.+++|++|++++|.+.           .+| .+.++
T Consensus         1 R~L~Ls~n~l~~--l~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~-----------~l~-~~~~l   64 (124)
T d1dcea3           1 RVLHLAHKDLTV--LC-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-----------NVD-GVANL   64 (124)
T ss_dssp             SEEECTTSCCSS--CC-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-----------CCG-GGTTC
T ss_pred             CEEEcCCCCCCC--Cc-ccccCCCCCEEECCCCccC-cchhhhhhhhccccccccccccc-----------ccC-ccccc
Confidence            689999999983  45 4788999999999999998 57778899999999999988765           444 57888


Q ss_pred             CCCCEEECcCCCCCCCC-CccccCCCCCCeEeeeccCCC
Q 046398          200 TSLRHLDLSANKFNSTT-AGWLSKFNHLEFLSLSSNGLQ  237 (794)
Q Consensus       200 ~~L~~L~Ls~n~l~~~~-~~~l~~l~~L~~L~L~~n~l~  237 (794)
                      ++|++|++++|+++... ...+..+++|++|++++|+++
T Consensus        65 ~~L~~L~l~~N~i~~~~~~~~l~~~~~L~~L~l~~N~i~  103 (124)
T d1dcea3          65 PRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLC  103 (124)
T ss_dssp             SSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGG
T ss_pred             cccCeEECCCCccCCCCCchhhcCCCCCCEEECCCCcCC
Confidence            99999999999888764 356788888888888888876

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.43  E-value=3.3e-13  Score=117.31  Aligned_cols=82  Identities=28%  Similarity=0.380  Sum_probs=55.6

Q ss_pred             eEEEcCCCccccccChhhhcccCCCEEecccccccccCCccccccCCCCEEeCCCCcCcccC-cccccCCCCCCEEeCcC
Q 046398          609 RIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQIPENIGNLISIESLDFSTNQLSSKI-SQSMSSLSFLNHLNVSN  687 (794)
Q Consensus       609 ~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~-p~~l~~l~~L~~L~ls~  687 (794)
                      ++||+++|+++ .+|+.++.+++|+.|++++|+|+ .+| .++++++|+.|++++|+++... +..+..+++|++|++++
T Consensus        23 ~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~-~l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~~~~L~~L~l~~   99 (124)
T d1dcea3          23 THLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQG   99 (124)
T ss_dssp             CEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTT
T ss_pred             CEEECCCCccC-cchhhhhhhhccccccccccccc-ccC-ccccccccCeEECCCCccCCCCCchhhcCCCCCCEEECCC
Confidence            66666666666 45666777777777777777776 344 3677777777777777776543 24566777777777777


Q ss_pred             Cccccc
Q 046398          688 NLLTGK  693 (794)
Q Consensus       688 N~l~g~  693 (794)
                      |++++.
T Consensus       100 N~i~~~  105 (124)
T d1dcea3         100 NSLCQE  105 (124)
T ss_dssp             SGGGGS
T ss_pred             CcCCcC
Confidence            777643

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=2.3e-13  Score=124.54  Aligned_cols=64  Identities=19%  Similarity=0.189  Sum_probs=37.2

Q ss_pred             cCCCCCCCEEEccCCcccccCChhhhhcCCCCcEEEcccccccccCCccccCCCCCCEEEccCCcCcc
Q 046398          483 FKNFSNLEVLNLGDNEFVGKIPTWMGEGFTSLLILILRSNKFDGFLPIQLCRLTSLQILDVANNSLSG  550 (794)
Q Consensus       483 l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~  550 (794)
                      +.++.++++|+|++|+|+ .++.. +..+++|+.|+|++|+++..  +.+..+++|++|++++|+++.
T Consensus        14 ~~n~~~lr~L~L~~n~I~-~i~~~-~~~l~~L~~L~Ls~N~i~~l--~~~~~l~~L~~L~ls~N~i~~   77 (162)
T d1a9na_          14 YTNAVRDRELDLRGYKIP-VIENL-GATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICR   77 (162)
T ss_dssp             EECTTSCEEEECTTSCCC-SCCCG-GGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCE
T ss_pred             ccCcCcCcEEECCCCCCC-ccCcc-ccccccCCEEECCCCCCCcc--CCcccCcchhhhhcccccccC
Confidence            445566677777777766 45543 23466666666666666533  235556666666666665553

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.42  E-value=1.8e-14  Score=150.90  Aligned_cols=261  Identities=13%  Similarity=0.128  Sum_probs=161.1

Q ss_pred             CCccccCCCCCCeEeccCcccccccCh---hhhcCCCCCCEEECcCCcceeEcCCCCcCccccceEecccccCCCCCCcc
Q 046398          367 IPLSLGKISHLEYLDLSNNKMNGTLSE---IHFVNLTKLTWFSASGNSLILQVNPNWVPPFQLKTLLLMSCHLGPQFPSW  443 (794)
Q Consensus       367 ~p~~l~~l~~L~~L~Ls~N~l~~~~~~---~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~  443 (794)
                      +...+....+|+.|+|++|.+...-..   ..+...++|+.++++++.........              ......+...
T Consensus        23 l~~~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~--------------~~~~~~l~~~   88 (344)
T d2ca6a1          23 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEI--------------PEALRLLLQA   88 (344)
T ss_dssp             TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGS--------------HHHHHHHHHH
T ss_pred             HHHHHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCccccccccc--------------chHHHHHHHH
Confidence            344566678888888888877532111   13445566666666655321100000              0000012233


Q ss_pred             cCCCCCCCEEeccCCCCCCCcchhHHhccccceeccCcccCCCCCCCEEEccCCcccccCChhh------------hhcC
Q 046398          444 LHSQKNLSVLDISNARISDTIPRWFWNSIFQLSGIIPESFKNFSNLEVLNLGDNEFVGKIPTWM------------GEGF  511 (794)
Q Consensus       444 l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~------------~~~l  511 (794)
                      +..+++|+.|++++|.+...-...           +...+..+++|+.|++++|.+.......+            ....
T Consensus        89 l~~~~~L~~L~L~~n~i~~~~~~~-----------l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~  157 (344)
T d2ca6a1          89 LLKCPKLHTVRLSDNAFGPTAQEP-----------LIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNA  157 (344)
T ss_dssp             HTTCTTCCEEECCSCCCCTTTHHH-----------HHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             HhhCCCcccccccccccccccccc-----------hhhhhcccccchheecccccccccccccccccccccccccccccC
Confidence            556778888999888877532211           22344567788999999887753211111            1245


Q ss_pred             CCCcEEEccccccccc----CCccccCCCCCCEEEccCCcCcccCCchhhccccccccccccCCCCcccccccccccccc
Q 046398          512 TSLLILILRSNKFDGF----LPIQLCRLTSLQILDVANNSLSGTMPGCVNNFSAMATIDSSHQSNAMSYFEVTAYDCEVL  587 (794)
Q Consensus       512 ~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l  587 (794)
                      +.|+.+.+++|++...    +...+...+.|+.|++++|++...-...+                               
T Consensus       158 ~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~-------------------------------  206 (344)
T d2ca6a1         158 PPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHL-------------------------------  206 (344)
T ss_dssp             CCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHH-------------------------------
T ss_pred             cccceeecccccccccccccccchhhhhhhhcccccccccccccccccc-------------------------------
Confidence            7888888888887643    23345567889999999888763200000                               


Q ss_pred             eeeEEEEeccchhhcccccceeEEEcCCCccccc----cChhhhcccCCCEEecccccccccCCccc----cc--cCCCC
Q 046398          588 EDASIVMKGSMVEYNSILNLVRIIDVSKNNFSGE----IPMELTYLRGLQSLNLSHNIFTGQIPENI----GN--LISIE  657 (794)
Q Consensus       588 ~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~----ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l----~~--l~~L~  657 (794)
                                ........+.|+.|++++|.++..    +...+..+++|++|+|++|.+++.-...+    ..  .+.|+
T Consensus       207 ----------l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~  276 (344)
T d2ca6a1         207 ----------LLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQ  276 (344)
T ss_dssp             ----------HHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCC
T ss_pred             ----------hhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCC
Confidence                      001122345678999999998643    45567788999999999999986433333    22  36799


Q ss_pred             EEeCCCCcCccc----Cccccc-CCCCCCEEeCcCCccccc
Q 046398          658 SLDFSTNQLSSK----ISQSMS-SLSFLNHLNVSNNLLTGK  693 (794)
Q Consensus       658 ~L~Ls~N~l~~~----~p~~l~-~l~~L~~L~ls~N~l~g~  693 (794)
                      +||+++|+++..    +...+. +.+.|++|++++|.+...
T Consensus       277 ~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~~~  317 (344)
T d2ca6a1         277 TLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEE  317 (344)
T ss_dssp             EEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTT
T ss_pred             EEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCCCc
Confidence            999999998763    333343 578899999999998654

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=2e-13  Score=124.90  Aligned_cols=126  Identities=17%  Similarity=0.105  Sum_probs=90.2

Q ss_pred             cCCCCcEEEcccccccccCCccccCCCCCCEEEccCCcCcccCCchhhccccccccccccCCCCccccccccccccccee
Q 046398          510 GFTSLLILILRSNKFDGFLPIQLCRLTSLQILDVANNSLSGTMPGCVNNFSAMATIDSSHQSNAMSYFEVTAYDCEVLED  589 (794)
Q Consensus       510 ~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~  589 (794)
                      +..++++|+|++|+++.. +..+..+++|+.||+++|+++.. + .+..                               
T Consensus        16 n~~~lr~L~L~~n~I~~i-~~~~~~l~~L~~L~Ls~N~i~~l-~-~~~~-------------------------------   61 (162)
T d1a9na_          16 NAVRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIRKL-D-GFPL-------------------------------   61 (162)
T ss_dssp             CTTSCEEEECTTSCCCSC-CCGGGGTTCCSEEECCSSCCCEE-C-CCCC-------------------------------
T ss_pred             CcCcCcEEECCCCCCCcc-CccccccccCCEEECCCCCCCcc-C-Cccc-------------------------------
Confidence            466788888888888754 55667788888888888888732 2 1222                               


Q ss_pred             eEEEEeccchhhcccccceeEEEcCCCccccccChhhhcccCCCEEecccccccccCC--ccccccCCCCEEeCCCCcCc
Q 046398          590 ASIVMKGSMVEYNSILNLVRIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQIP--ENIGNLISIESLDFSTNQLS  667 (794)
Q Consensus       590 ~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip--~~l~~l~~L~~L~Ls~N~l~  667 (794)
                                     ++.|+.|++++|+++...+..+..+++|+.|++++|+++. ++  ..+..+++|+.|++++|+++
T Consensus        62 ---------------l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~L~~N~i~~-~~~l~~l~~l~~L~~L~l~~N~i~  125 (162)
T d1a9na_          62 ---------------LRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVE-LGDLDPLASLKSLTYLCILRNPVT  125 (162)
T ss_dssp             ---------------CSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCCC-GGGGGGGGGCTTCCEEECCSSGGG
T ss_pred             ---------------CcchhhhhcccccccCCCccccccccccccceeccccccc-cccccccccccccchhhcCCCccc
Confidence                           3345788888888886555556678888888888888873 33  35777888888888888886


Q ss_pred             ccC---cccccCCCCCCEEeC
Q 046398          668 SKI---SQSMSSLSFLNHLNV  685 (794)
Q Consensus       668 ~~~---p~~l~~l~~L~~L~l  685 (794)
                      ...   +..+..+++|++||-
T Consensus       126 ~~~~~r~~~i~~lp~L~~LD~  146 (162)
T d1a9na_         126 NKKHYRLYVIYKVPQVRVLDF  146 (162)
T ss_dssp             GSTTHHHHHHHHCTTCSEETT
T ss_pred             cccchHHHHHHHCCCcCeeCC
Confidence            532   234677788888773

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.37  E-value=2.7e-14  Score=149.55  Aligned_cols=99  Identities=29%  Similarity=0.377  Sum_probs=54.7

Q ss_pred             ccccCCCCCCEEeCCCCCCCCC---CCCcccCCCCCCCEEEcCCCCCCCC---CcccccCCccccccccCcccccccccc
Q 046398          111 PSLVDLKHLTHLDLSGNDFQGI---RIPKYLGSLKNLRYLNLSGAEFAGI---IPHQLGNLSNLRCLDLSWSEYALQVHS  184 (794)
Q Consensus       111 ~~l~~l~~L~~L~Ls~n~l~~~---~~p~~~~~l~~L~~L~Ls~n~l~~~---~p~~l~~l~~L~~L~Ls~~~~~~~~~~  184 (794)
                      ..+.+.+.|++|+|++|.+...   .+...+...++|+.|+++++.....   .|..+.                     
T Consensus        25 ~~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~---------------------   83 (344)
T d2ca6a1          25 AVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALR---------------------   83 (344)
T ss_dssp             HHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHH---------------------
T ss_pred             HHHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHH---------------------
Confidence            3456677888888888876531   1234456677788888877654311   111110                     


Q ss_pred             ccccccCCCCccCCCCCCCEEECcCCCCCCCCCc----cccCCCCCCeEeeeccCC
Q 046398          185 FSWLSGQIPNRLGNLTSLRHLDLSANKFNSTTAG----WLSKFNHLEFLSLSSNGL  236 (794)
Q Consensus       185 ~~~~~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~~----~l~~l~~L~~L~L~~n~l  236 (794)
                            .+...+..+++|++|+|++|.++.....    .+...++|++|++++|.+
T Consensus        84 ------~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l  133 (344)
T d2ca6a1          84 ------LLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGL  133 (344)
T ss_dssp             ------HHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCC
T ss_pred             ------HHHHHHhhCCCcccccccccccccccccchhhhhcccccchheecccccc
Confidence                  1122344456666677776666554322    233456666666666654

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.26  E-value=2.8e-13  Score=128.62  Aligned_cols=142  Identities=19%  Similarity=0.260  Sum_probs=89.5

Q ss_pred             CCEEEccCC--cccccCChhhhhcCCCCcEEEcccccccccCCccccCCCCCCEEEccCCcCcccCCchhhccccccccc
Q 046398          489 LEVLNLGDN--EFVGKIPTWMGEGFTSLLILILRSNKFDGFLPIQLCRLTSLQILDVANNSLSGTMPGCVNNFSAMATID  566 (794)
Q Consensus       489 L~~L~Ls~n--~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~  566 (794)
                      ++.+++.++  .+. .+|..+. .+++|+.|+|++|+++.. + .+..+++|++|++++|+++ .+|..+..        
T Consensus        25 ~~~~~l~~~~~~i~-~l~~sl~-~L~~L~~L~Ls~n~I~~i-~-~l~~l~~L~~L~Ls~N~i~-~i~~~~~~--------   91 (198)
T d1m9la_          25 AEKVELHGMIPPIE-KMDATLS-TLKACKHLALSTNNIEKI-S-SLSGMENLRILSLGRNLIK-KIENLDAV--------   91 (198)
T ss_dssp             CSCEECCBCCTTCC-CCHHHHH-HTTTCCEEECSEEEESCC-C-CHHHHTTCCEEECCEEEEC-SCSSHHHH--------
T ss_pred             cceeeeecccCchh-hhhhHHh-cccccceeECcccCCCCc-c-cccCCccccChhhcccccc-cccccccc--------
Confidence            444555433  232 3444554 577788888888877743 3 4677778888888888775 33332222        


Q ss_pred             cccCCCCcccccccccccccceeeEEEEeccchhhcccccceeEEEcCCCccccccChhhhcccCCCEEecccccccccC
Q 046398          567 SSHQSNAMSYFEVTAYDCEVLEDASIVMKGSMVEYNSILNLVRIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQI  646 (794)
Q Consensus       567 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~i  646 (794)
                                                            ++.|+.|++++|+++. + +.+..+++|+.|++++|+++. +
T Consensus        92 --------------------------------------~~~L~~L~l~~N~i~~-l-~~~~~l~~L~~L~L~~N~i~~-~  130 (198)
T d1m9la_          92 --------------------------------------ADTLEELWISYNQIAS-L-SGIEKLVNLRVLYMSNNKITN-W  130 (198)
T ss_dssp             --------------------------------------HHHCCEEECSEEECCC-H-HHHHHHHHSSEEEESEEECCC-H
T ss_pred             --------------------------------------cccccccccccccccc-c-ccccccccccccccccchhcc-c
Confidence                                                  2234777777777764 3 346777788888888888773 3


Q ss_pred             C--ccccccCCCCEEeCCCCcCcccCccc----------ccCCCCCCEEe
Q 046398          647 P--ENIGNLISIESLDFSTNQLSSKISQS----------MSSLSFLNHLN  684 (794)
Q Consensus       647 p--~~l~~l~~L~~L~Ls~N~l~~~~p~~----------l~~l~~L~~L~  684 (794)
                      +  +.+..+++|+.|+|++|++....+..          +..+++|+.||
T Consensus       131 ~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD  180 (198)
T d1m9la_         131 GEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             HHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES
T ss_pred             cccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeC
Confidence            3  35677778888888888776544432          45667777766

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.18  E-value=1e-12  Score=124.64  Aligned_cols=135  Identities=21%  Similarity=0.271  Sum_probs=99.0

Q ss_pred             cCcccCCCCCCCEEEccCCcccccCChhhhhcCCCCcEEEcccccccccCCccccCCCCCCEEEccCCcCcccCCchhhc
Q 046398          479 IPESFKNFSNLEVLNLGDNEFVGKIPTWMGEGFTSLLILILRSNKFDGFLPIQLCRLTSLQILDVANNSLSGTMPGCVNN  558 (794)
Q Consensus       479 ~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~  558 (794)
                      ++..+..+++|++|+|++|+++ .++. +. .+++|+.|+|++|+++. +|..+..+++|++|++++|+++.. + .+..
T Consensus        40 l~~sl~~L~~L~~L~Ls~n~I~-~i~~-l~-~l~~L~~L~Ls~N~i~~-i~~~~~~~~~L~~L~l~~N~i~~l-~-~~~~  113 (198)
T d1m9la_          40 MDATLSTLKACKHLALSTNNIE-KISS-LS-GMENLRILSLGRNLIKK-IENLDAVADTLEELWISYNQIASL-S-GIEK  113 (198)
T ss_dssp             CHHHHHHTTTCCEEECSEEEES-CCCC-HH-HHTTCCEEECCEEEECS-CSSHHHHHHHCCEEECSEEECCCH-H-HHHH
T ss_pred             hhhHHhcccccceeECcccCCC-Cccc-cc-CCccccChhhccccccc-cccccccccccccccccccccccc-c-cccc
Confidence            4456777889999999999987 6653 43 68899999999999874 455555567899999999988732 1 2333


Q ss_pred             cccccccccccCCCCcccccccccccccceeeEEEEeccchhhcccccceeEEEcCCCccccccC-hhhhcccCCCEEec
Q 046398          559 FSAMATIDSSHQSNAMSYFEVTAYDCEVLEDASIVMKGSMVEYNSILNLVRIIDVSKNNFSGEIP-MELTYLRGLQSLNL  637 (794)
Q Consensus       559 l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip-~~l~~l~~L~~L~L  637 (794)
                                                                    +++|+.|++++|+++.... ..+..+++|+.|+|
T Consensus       114 ----------------------------------------------l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L  147 (198)
T d1m9la_         114 ----------------------------------------------LVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLL  147 (198)
T ss_dssp             ----------------------------------------------HHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEE
T ss_pred             ----------------------------------------------cccccccccccchhccccccccccCCCccceeec
Confidence                                                          3345889999999874322 46788999999999


Q ss_pred             ccccccccCCcc----------ccccCCCCEEeCCCCcCc
Q 046398          638 SHNIFTGQIPEN----------IGNLISIESLDFSTNQLS  667 (794)
Q Consensus       638 s~N~l~~~ip~~----------l~~l~~L~~L~Ls~N~l~  667 (794)
                      ++|.++...+..          +..+++|+.||  +..++
T Consensus       148 ~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD--~~~I~  185 (198)
T d1m9la_         148 AGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD  185 (198)
T ss_dssp             CSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES--SGGGT
T ss_pred             CCCccccCcccccchhhHHHHHHHHCCCcCEeC--CccCC
Confidence            999987554432          56789999987  44444

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.14  E-value=6.8e-11  Score=106.98  Aligned_cols=58  Identities=24%  Similarity=0.288  Sum_probs=28.5

Q ss_pred             eEEEcCCCccccccChhhhcccCCCEEecccccccccCCccccccCCCCEEeCCCCcCc
Q 046398          609 RIIDVSKNNFSGEIPMELTYLRGLQSLNLSHNIFTGQIPENIGNLISIESLDFSTNQLS  667 (794)
Q Consensus       609 ~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~  667 (794)
                      +.|++++|+|+...|..|..+++|++|+|++|+|+ .+|.......+|+.|+|++|++.
T Consensus        59 ~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~-~l~~~~~~~~~l~~L~L~~Np~~  116 (156)
T d2ifga3          59 RNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPLH  116 (156)
T ss_dssp             SEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCS-CCCSTTTCSCCCCEEECCSSCCC
T ss_pred             CcceeeccccCCcccccccccccccceeccCCCCc-ccChhhhccccccccccCCCccc
Confidence            34444444444344444555555555555555555 33333223334556666666553

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.12  E-value=1.2e-10  Score=105.42  Aligned_cols=85  Identities=19%  Similarity=0.155  Sum_probs=71.0

Q ss_pred             ceeEEEcCCC-ccccccChhhhcccCCCEEecccccccccCCccccccCCCCEEeCCCCcCcccCcccccCCCCCCEEeC
Q 046398          607 LVRIIDVSKN-NFSGEIPMELTYLRGLQSLNLSHNIFTGQIPENIGNLISIESLDFSTNQLSSKISQSMSSLSFLNHLNV  685 (794)
Q Consensus       607 ~L~~LdLs~N-~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l  685 (794)
                      +++.|++++| .++...+..|.++++|+.|+|++|+|+...|..|..+++|++|+|++|+|+...+..+..+ .|+.|+|
T Consensus        32 ~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~~-~l~~L~L  110 (156)
T d2ifga3          32 NLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGL-SLQELVL  110 (156)
T ss_dssp             CCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSC-CCCEEEC
T ss_pred             ccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccCCCCcccChhhhccc-ccccccc
Confidence            3477788655 4776666779999999999999999997778889999999999999999997666666555 6999999


Q ss_pred             cCCcccc
Q 046398          686 SNNLLTG  692 (794)
Q Consensus       686 s~N~l~g  692 (794)
                      ++|++..
T Consensus       111 ~~Np~~C  117 (156)
T d2ifga3         111 SGNPLHC  117 (156)
T ss_dssp             CSSCCCC
T ss_pred             CCCcccC
Confidence            9999863

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.23  E-value=3.6e-08  Score=89.28  Aligned_cols=124  Identities=23%  Similarity=0.143  Sum_probs=72.4

Q ss_pred             CCCEEeCCCCCCCCCCCCcccCCCCCCCEEEcCCCCCCCCCcccccCCccccccccCccccccccccccccccCCCCccC
Q 046398          118 HLTHLDLSGNDFQGIRIPKYLGSLKNLRYLNLSGAEFAGIIPHQLGNLSNLRCLDLSWSEYALQVHSFSWLSGQIPNRLG  197 (794)
Q Consensus       118 ~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~~~~lp~~l~  197 (794)
                      ..+.||+++....     +.+..+..+..++...+... .++..+.++++|++|+|++|++.        -...++..+.
T Consensus        23 ~~~~Ldls~l~~~-----~~l~~~~~~~~l~~~~~~~~-~l~~~~~~~~~L~~L~Ls~N~i~--------~l~~~~~~~~   88 (162)
T d1koha1          23 SQQALDLKGLRSD-----PDLVAQNIDVVLNRRSSMAA-TLRIIEENIPELLSLNLSNNRLY--------RLDDMSSIVQ   88 (162)
T ss_dssp             SSCCBCCCCCSSC-----TTTTTTTCCCCTTSHHHHHH-HHHHHHHHCTTCCCCCCCSSCCC--------CCSGGGTHHH
T ss_pred             hhCeeecccCCCC-----chhhhccchhhcchhhhHhh-hhHHHHHhCCCCCEeeCCCcccc--------CCchhHHHHh
Confidence            3455666655422     12333444444544444322 33444456788888888887765        1112334456


Q ss_pred             CCCCCCEEECcCCCCCCCCCccccCCCCCCeEeeeccCCCCCCCc------cccCCCCCCcEEE
Q 046398          198 NLTSLRHLDLSANKFNSTTAGWLSKFNHLEFLSLSSNGLQGTISS------IGLENLTSIKTID  255 (794)
Q Consensus       198 ~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~i~~------~~l~~l~~L~~L~  255 (794)
                      .+++|+.|++++|.++...+-......+|++|++++|++......      ..+..+|+|+.||
T Consensus        89 ~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~i~~~~P~L~~LD  152 (162)
T d1koha1          89 KAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAIRERFPKLLRLD  152 (162)
T ss_dssp             HSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHHHHTTSTTCCEET
T ss_pred             hCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHHHHHHHCCCCCEEC
Confidence            678888888888888776554444556788888888887654332      1244566666665

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.22  E-value=5.1e-08  Score=88.26  Aligned_cols=80  Identities=19%  Similarity=0.158  Sum_probs=43.9

Q ss_pred             ccceeEEEcCCCccccc--cChhhhcccCCCEEecccccccccCCccccccCCCCEEeCCCCcCcccCcc-------ccc
Q 046398          605 LNLVRIIDVSKNNFSGE--IPMELTYLRGLQSLNLSHNIFTGQIPENIGNLISIESLDFSTNQLSSKISQ-------SMS  675 (794)
Q Consensus       605 l~~L~~LdLs~N~l~~~--ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~-------~l~  675 (794)
                      ++.|++|||++|+++..  ++..+..+++|+.|+|++|+|+...+-.......|+.|++++|++......       .+.
T Consensus        64 ~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~i~~  143 (162)
T d1koha1          64 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAIRE  143 (162)
T ss_dssp             CTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHHHHT
T ss_pred             CCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHHHHHH
Confidence            34445566666666532  234455666777777777776632221223334566777777766654332       244


Q ss_pred             CCCCCCEEe
Q 046398          676 SLSFLNHLN  684 (794)
Q Consensus       676 ~l~~L~~L~  684 (794)
                      .+|+|+.||
T Consensus       144 ~~P~L~~LD  152 (162)
T d1koha1         144 RFPKLLRLD  152 (162)
T ss_dssp             TSTTCCEET
T ss_pred             HCCCCCEEC
Confidence            566666665

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.50  E-value=3.4e-05  Score=69.44  Aligned_cols=63  Identities=16%  Similarity=0.096  Sum_probs=31.1

Q ss_pred             hcccCCCEEecccccccccC----CccccccCCCCEEeCCCCcCccc-------CcccccCCCCCCEEeCcCCc
Q 046398          627 TYLRGLQSLNLSHNIFTGQI----PENIGNLISIESLDFSTNQLSSK-------ISQSMSSLSFLNHLNVSNNL  689 (794)
Q Consensus       627 ~~l~~L~~L~Ls~N~l~~~i----p~~l~~l~~L~~L~Ls~N~l~~~-------~p~~l~~l~~L~~L~ls~N~  689 (794)
                      ...+.|++|+|++|.++..-    -..+...++|+.|++++|.+...       +...+..-++|+.|+++++.
T Consensus        69 ~~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~~  142 (167)
T d1pgva_          69 ETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS  142 (167)
T ss_dssp             HHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred             hhcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCCC
Confidence            33455555555555554321    12234445566666665543321       33344445666666666554

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.40  E-value=3.4e-05  Score=69.45  Aligned_cols=60  Identities=12%  Similarity=0.123  Sum_probs=33.5

Q ss_pred             ceeEEEcCCCccccc----cChhhhcccCCCEEecccccccc-------cCCccccccCCCCEEeCCCCcC
Q 046398          607 LVRIIDVSKNNFSGE----IPMELTYLRGLQSLNLSHNIFTG-------QIPENIGNLISIESLDFSTNQL  666 (794)
Q Consensus       607 ~L~~LdLs~N~l~~~----ip~~l~~l~~L~~L~Ls~N~l~~-------~ip~~l~~l~~L~~L~Ls~N~l  666 (794)
                      .|+.|++++|.++..    +-..+...++|++|+|++|++..       .+.+.+...++|+.|+++.+..
T Consensus        73 ~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~~~  143 (167)
T d1pgva_          73 SLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM  143 (167)
T ss_dssp             SCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred             cccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCCCc
Confidence            345666666665532    22234455667777777765442       1233444567777777766543

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.64  E-value=0.0003  Score=62.88  Aligned_cols=18  Identities=11%  Similarity=0.095  Sum_probs=9.4

Q ss_pred             ccCCCCCCEEEccCCcCc
Q 046398          532 LCRLTSLQILDVANNSLS  549 (794)
Q Consensus       532 ~~~l~~L~~L~Ls~N~l~  549 (794)
                      +...++|++|++++|.++
T Consensus        42 l~~n~~L~~L~Ls~n~l~   59 (166)
T d1io0a_          42 LKTNTYVKKFSIVGTRSN   59 (166)
T ss_dssp             HTTCCSCCEEECTTSCCC
T ss_pred             HhcCCccCeeeccCCccc
Confidence            334455555555555543

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.62  E-value=0.00055  Score=61.12  Aligned_cols=87  Identities=16%  Similarity=0.198  Sum_probs=64.8

Q ss_pred             ccceeEEEcCCCccccc----cChhhhcccCCCEEeccccccccc----CCccccccCCCCEEeC--CCCcCcc----cC
Q 046398          605 LNLVRIIDVSKNNFSGE----IPMELTYLRGLQSLNLSHNIFTGQ----IPENIGNLISIESLDF--STNQLSS----KI  670 (794)
Q Consensus       605 l~~L~~LdLs~N~l~~~----ip~~l~~l~~L~~L~Ls~N~l~~~----ip~~l~~l~~L~~L~L--s~N~l~~----~~  670 (794)
                      .+.|+.|++++|.++..    +-..+...+.++.+++++|.++..    +-+.+...++|+.++|  ++|.+..    .+
T Consensus        45 n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~L  124 (166)
T d1io0a_          45 NTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEI  124 (166)
T ss_dssp             CCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHH
T ss_pred             CCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHHHHHHHhCccccEEeeccCCCcCcHHHHHHH
Confidence            45568999999998754    334456779999999999998643    3356677889987555  5677765    35


Q ss_pred             cccccCCCCCCEEeCcCCccc
Q 046398          671 SQSMSSLSFLNHLNVSNNLLT  691 (794)
Q Consensus       671 p~~l~~l~~L~~L~ls~N~l~  691 (794)
                      ...+...+.|+.|+++.++..
T Consensus       125 a~~L~~n~~L~~L~l~~~~~~  145 (166)
T d1io0a_         125 ANMLEKNTTLLKFGYHFTQQG  145 (166)
T ss_dssp             HHHHHHCSSCCEEECCCSSHH
T ss_pred             HHHHHhCCCcCEEeCcCCCCc
Confidence            556778899999999887654