Citrus Sinensis ID: 046417

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-----
Protein Sequence
MSPQKRSSSASPPPSTNDLKQRVITCLNKLADRDTLPVATAELESIARTLTQDSFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPHLSKMISTVSCRLRDPDSSVRSACVAATTAMSLNITKPSFSVLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNPEVEQLRKLLPRLGKAVRIEGFKAKAAVLGVIGSVVRVGGARSKGVLDWLVPCLVEFLCCDDWATRKAAAEVLGKVAVFDKDLATEYKRSCLAALETRRFDKVKIVRETMNRSLEMWKEVPGVCEEVSSPSPSKSFSIDNGSSGCFPSITKSSQNVGLRTPQPKKMVPTSRSPASDSSYGTTSKTEISFKSNNRKSGASILCKSADGKSSDWKVEIAVPRTPSSIGTCEVHNRTSDSKDAKLGEVENNVNCQPEKKMVIYSKIRDDKMYKCGGFKSGSRVVPYSDDEMSDFVHHNGIDEDFDYPKDPEDLSLIREQLLQIENQQSSLFDLLQRFIGSSQSGMNSLETRVHGLEMALDEISYDLALSNGRILNNNAAENTCCKLPGAEFLSSKFWRRAEGRSSTSRFSSSGNILPLHSGSNTLDKD
Secondary Structure (PSIPRED)
cccccccccccccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHcccccHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEccccccccccccccccccccccccccccccccccccccccEEEEEccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccHHHHccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHccccccHHHHHHHHccccccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHccccccccccccEEEEEcccccccccccHccccccccccccccccccccccccccEEEEEcccccccccccccccccEEEEcccccccccEEcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccEcccccccccccccccccHHHHHHHcccccc
Coil and Loop (DISEMBL)
mspqkrsssaspppstndlKQRVITCLNkladrdtlpVATAELESIARTLTQDSFSSFLNclqttdssskspvrKQCVNLLTLLsrshgdslspHLSKMIStvscrlrdpdssvRSACVAATTAMslnitkpsfsvlskPLIELILVEQDVNSQVGGAMCLAAAidaapnpeVEQLRKLLPRLGKAVRIEGFKAKAAVLGVIGSVVRVggarskgvldWLVPCLVEFLCCDDWATRKAAAEVLGKVAVFDKDLATEYKRSCLAALETRRFDKVKIVRETMNRSLEMWkevpgvceevsspspsksfsidngssgcfpsitkssqnvglrtpqpkkmvptsrspasdssygttskteisfksnnrksgasilcksadgkssdwkveiavprtpssigtcevhnrtsdskdaklgevennvncqpekkMVIYSKirddkmykcggfksgsrvvpysddemsdfvhhngidedfdypkdpedlSLIREQLLQIENQQSSLFDLLQRFigssqsgmnslETRVHGLEMALDEISYDlalsngrilnnnaaentccklpgaeflsskfwrraegrsstsrfsssgnilplhsgsntldkd
Flexible Loop (DISEMBL)
mspqkrsssaspppstndlKQRVITCLNkladrdtlPVATAELESIARTLTQDSFSSFLNCLQttdssskspvrKQCVNLLTLLsrshgdslspHLSKMISTVSCRLRDPDSSVRSACVAATtamslnitkpsFSVLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNPEVEQLRKLLPRLGKAVRIEgfkakaavlGVIGSVVRVGGARSKGVLDWLVPCLVEFLCCDDWATRKAAAEVLGKVAVFDKDLATEYKRSClaaletrrfdkvkIVRETMNRSLEMWKEVPGVCEEVSSPSPSKSFSIDNGSSGCFPSITKssqnvglrtpqpkkmvptsrspasdssygttskteisfksnnrksgaSILCKsadgkssdwKVEIAvprtpssigtcevhnrtsdskdaklgevennvncqpekkMVIYSKIRDDKMYKCGGFKSGSRVVPYSDDEMSDFVHHNGIDEDFDYPKDPEDLSLIREQLLQIENQQSSLFDLLQRFIGSSQSGMNSLETRVHGLEMALDEISYDLALSNGRILNNNAAENTCCKLPGAEFLSSKFWRRAEGRsstsrfsssgnilplhsgsntldkd
Low Complexity Region (SEG)
MSPQKRSSSASPPPSTNDLKQRVITCLNKLADRDTLPVATAELESIARTLTQDSFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPHLSKMISTVSCRLRDPDSSVRSACVAATTAMSLNITKPSFSVLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNPEVEQLRKLLPRLGKAVRIEGFKAKAAVLGVIGSVVRVGGARSKGVLDWLVPCLVEFLCCDDWATRKAAAEVLGKVAVFDKDLATEYKRSCLAALETRRFDKVKIVRETMNRSLEMWKevpgvceevsspspsksfsIDNGSSGCFPSITKSSQNVGLRTPQPKKMVPTSRSPASDSSYGTTSKTEISFKSNNRKSGASILCKSADGKSSDWKVEIAVPRTPSSIGTCEVHNRTSDSKDAKLGEVENNVNCQPEKKMVIYSKIRDDKMYKCGGFKSGSRVVPYSDDEMSDFVHHNGIDEDFDYPKDPEDLSLIREQLLQIENQQSSLFDLLQRFIGSSQSGMNSLETRVHGLEMALDEISYDLALSNGRILNNNAAENTCCKLPGAEFLSSKFWRRAEGrsstsrfsssGNILPLHSGSNTLDKD
Disordered region (IsUnstruct)
*********************RVITCLNKLADRDTLPVATAELESIARTLTQDSFSSFLNCLQ************QCVNLLTLL********************C*********RSACVAATTAMSLNITKPSFSVLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNPEVEQLRKLLPRLGKAVRIEGFKAKAAVLGVIGSVVRVGGARSKGVLDWLVPCLVEFLCCDDWATRKAAAEVLGKVAVFDKDLATEYKRSCLAALETRRFDKVKIVRETMNRSLEMWKEVPGVC**********************************************************************************************************************************KKMVIYSKIRDDKMYKCGGFKSGSRVVPYS****SDFVHHNGIDEDFDY******LSLIREQLLQIENQQSSLFDLLQRFIG********LETRVHGLEMALDEISYDLALSNGRILNNNAAENTCCKLPGAEFLSSKFWR******************************
Disordered Region (DISOPRED)
*********************RVITCLNKLADRDTLPVATAELESIARTLTQDSFSSFLNCLQT**********KQCVNLLTLLSRSHGDSLSPHLSKMISTVSCRLRDPDSSVRSACVAATTAMSLNITKPSFSVLSKPLIELILVE****SQVGGAMCLAAAIDAAPNPEVEQLRKLLPRLGKAVRIEGFKAKAAVLGVIGSVVRVGGARSKGVLDWLVPCLVEFLCCDDWATRKAAAEVLGKVAVFDKDLATEYKRSCLAALETRRFDKVKIVRETMNRSLEMWKE**************************************************************************************************************************************************************************************************REQLLQ*ENQ*****************************EMALD********************************************************************
Disordered Region (DISEMBL)
******************LKQRVITCLNKLADRDTLPVATAELESIARTLTQDSFSSFLNCLQ**********RKQCVNLLTLLSRSHGDSLSPHLSKMISTVS************ACVAATTAMSLNITKPSFSVLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNPEVEQLRKLLPRLGKAVRIEGFKAKAAVLGVIGSVVRVGGARSKGVLDWLVPCLVEFLCCDDWATRKAAAEVLGKVAVFDKDLATEYKRSCLAALETRRFDKVKIVRETMNRSLEMWKEVPG*****************NGSSGCFPSITKS*********************************EISFKSNNRKSGASILCK********WKVEIAVPRTPSSIGTCEVHNRTSDSKDAKLGEVENNVNCQPEKKMVIYSKIRDDKMYKCGGFKSGSRVVPYSDDEMSDFVHHNGIDEDFDYPKDPEDLSLIREQLLQIENQQSSLFDLLQRFIGSSQSGMNSLETRVHGLEMALDEISYDLALSNGRILNNNAAENTCCKLPGAEFLSSKFWRR************SGNILPLHS********
Disordered Region (DISPRO)
*************PSTNDLKQRVITCLNKLADRDTLPVATAELESIARTLTQDSFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPHLSKMISTVSCRLRDPDSSVRSACVAATTAMSLNITKPSFSVLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNPEVEQLRKLLPRLGKAVRIEGFKAKAAVLGVIGSVVRVGGARSKGVLDWLVPCLVEFLCCDDWATRKAAAEVLGKVAVFDKDLATEYKRSCLAALETRRFDKVKIVRETMNRSLEMWKEVP*****************************************************************************************DWKVEIAVPRT*********************************KKM***SK***************SRV********SDFVHHNGIDEDFDYPKDPEDLSLIREQLLQIENQQSSLFDLLQRFIGSSQSGMNSLETRVHGLEMALDEISYDLALSN***********TCCKLPGAEFLSSKFWRRAE****T***SSSGNILPL**********
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
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Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSPQKRSSSASPPPSTNDLKQRVITCLNKLADRDTLPVATAELESIARTLTQDSFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPHLSKMISTVSCRLRDPDSSVRSACVAATTAMSLNITKPSFSVLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNPEVEQLRKLLPRLGKAVRIEGFKAKAAVLGVIGSVVRVGGARSKGVLDWLVPCLVEFLCCDDWATRKAAAEVLGKVAVFDKDLATEYKRSCLAALETRRFDKVKIVRETMNRSLEMWKEVPGVCEEVSSPSPSKSFSIDNGSSGCFPSITKSSQNVGLRTPQPKKMVPTSRSPASDSSYGTTSKTEISFKSNNRKSGASILCKSADGKSSDWKVEIAVPRTPSSIGTCEVHNRTSDSKDAKLGEVENNVNCQPEKKMVIYSKIRDDKMYKCGGFKSGSRVVPYSDDEMSDFVHHNGIDEDFDYPKDPEDLSLIREQLLQIENQQSSLFDLLQRFIGSSQSGMNSLETRVHGLEMALDEISYDLALSNGRILNNNAAENTCCKLPGAEFLSSKFWRRAEGRSSTSRFSSSGNILPLHSGSNTLDKD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	595	2.2.26 [Sep-21-2011]
F4I6M4	821	Microtubule-associated pr	no	no	0.463	0.336	0.363	4e-42
Q9T041	864	Microtubule-associated pr	no	no	0.458	0.315	0.383	2e-41

>sp|F4I6M4|SP2L_ARATH Microtubule-associated protein SPIRAL2-like OS=Arabidopsis thaliana GN=SP2L PE=2 SV=1

 Score =  173 bits (438), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 106/292 (36%), Positives = 165/292 (56%), Gaps = 16/292 (5%)

Query: 18  DLKQRVITCLNKLADRDTLPVATAELESIARTL--TQDSFSSFLNCLQTTDSSSKSPVRK 75
           +LKQR++T L++L DRDT  +A  +LE I  ++  + +     L+CL  + S  K+PV++
Sbjct: 36  ELKQRILTSLSRLGDRDTYQIAVDDLEKIVVSVPDSPEILPVLLHCLFDSSSDLKAPVKR 95

Query: 76  QCVNLLTLLSRSHGDSLSPHLSKMISTVSCRLRDPDSSVRSACVAATTAMSLNITKPS-- 133
           + + LL+ L  S+ D     L+K+IS +  RL+D D+ VR AC  A  ++S    K    
Sbjct: 96  ESIRLLSFLCLSYTDLSFSQLAKIISHIVKRLKDADNGVRDACRDAIGSLSAQFLKEKEV 155

Query: 134 ----------FSVLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNPEVEQLRKLLPRL 183
                       + +KPL E  + EQ+ + Q G A+C+   ID+A  P V   +KL PR+
Sbjct: 156 ENGNYVGSSLVGLFAKPLFE-AMAEQNKSLQSGAAICMGKMIDSATEPPVAAFQKLCPRI 214

Query: 184 GKAVRIEGFKAKAAVLGVIGSVVRVGGARSKGVLDWLVPCLVEFLCCDDWATRKAAAEVL 243
            K +    +  KA++L V+GS+ +VG A +   L+ L+  + E L C +W TRKAAA+VL
Sbjct: 215 SKLLNSPNYITKASLLPVVGSLSQVG-AIAPQSLESLLHSIHECLGCTNWVTRKAAADVL 273

Query: 244 GKVAVFDKDLATEYKRSCLAALETRRFDKVKIVRETMNRSLEMWKEVPGVCE 295
             +AV    L  +   S L ALE  RFDK+K VRE+++ +L +WK + G  E
Sbjct: 274 ISLAVHSSSLVADKTDSTLTALEACRFDKIKPVRESLSEALNVWKNIAGKGE 325

Plant-specific microtubule-associated protein (MAP) that regulates the orientation of cortical microtubules and the direction of organ growth.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9T041|MAPT_ARATH Microtubule-associated protein TORTIFOLIA1 OS=Arabidopsis thaliana GN=TOR1 PE=1 SV=2

 Score =  170 bits (431), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 110/287 (38%), Positives = 168/287 (58%), Gaps = 14/287 (4%)

Query: 18  DLKQRVITCLNKLADRDTLPVATAELESIARTLTQDSFSSFLNCLQTTDSSSKSPVRKQC 77
           +LKQ+++T ++KLADRDT  +A  +LE   ++LT ++   FLNCL  + S  K  V+K+C
Sbjct: 41  ELKQKILTSISKLADRDTYQIAVEDLEKTIQSLTPETLPMFLNCLYDSCSDPKPAVKKEC 100

Query: 78  VNLLTLLSRSHGDSLSPHLSKMISTVSCRLRDPDSSVRSACVAATTAMS----------L 127
           ++LL+ +   H DS + HL+K+I+ +  RL+D DS VR AC     A+S           
Sbjct: 101 LHLLSYVCSLHCDSTAAHLTKIIAQIVKRLKDSDSGVRDACRDTIGALSGIYLKGKEEGT 160

Query: 128 NITKPSFSV--LSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNPEVEQLRKLLPRLGK 185
           N    S +V    KPL E  + EQ+   Q G +MC+A  +++A +P V   +KL PR+ K
Sbjct: 161 NTGSASLAVGLFVKPLFE-AMGEQNKVVQSGASMCMARMVESAASPPVTSFQKLCPRICK 219

Query: 186 AVRIEGFKAKAAVLGVIGSVVRVGGARSKGVLDWLVPCLVEFLCCDDWATRKAAAEVLGK 245
            +    F AKA++L V+ S+ +V GA +   L+ L+  + + L   DW TRKAAAE L  
Sbjct: 220 LLSNSSFLAKASLLPVVSSLSQV-GAIAPQSLESLLESIHDCLGSTDWVTRKAAAETLTA 278

Query: 246 VAVFDKDLATEYKRSCLAALETRRFDKVKIVRETMNRSLEMWKEVPG 292
           +A     L  E   S +  LET RFDK+K VRE++  +L++WK++ G
Sbjct: 279 LASHSSGLIKEKTDSTITVLETCRFDKIKPVRESVTEALQLWKKISG 325

Plant-specific microtubule-associated protein (MAP) that regulates the orientation of cortical microtubules and the direction of organ growth.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	595
255558336	654	Microtubule-associated protein TORTIFOLI	0.991	0.902	0.622	0.0
224110978	631	predicted protein [Populus trichocarpa]	0.924	0.871	0.623	0.0
224102491	563	predicted protein [Populus trichocarpa]	0.936	0.989	0.629	0.0
449458125	658	PREDICTED: microtubule-associated protei	0.951	0.860	0.578	0.0
296086478	653	unnamed protein product [Vitis vinifera]	0.963	0.877	0.589	1e-176
225424811	654	PREDICTED: microtubule-associated protei	0.963	0.876	0.589	1e-176
357486347	750	Microtubule-associated protein TORTIFOLI	0.963	0.764	0.553	1e-164
225457188	638	PREDICTED: microtubule-associated protei	0.942	0.879	0.541	1e-159
356497808	793	PREDICTED: microtubule-associated protei	0.937	0.703	0.549	1e-158
8778871	649	T7N9.27 [Arabidopsis thaliana]	0.884	0.810	0.560	1e-154

>gi|255558336|ref|XP_002520195.1| Microtubule-associated protein TORTIFOLIA1, putative [Ricinus communis] gi|223540687|gb|EEF42250.1| Microtubule-associated protein TORTIFOLIA1, putative [Ricinus communis]

 Score =  717 bits (1850), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 375/602 (62%), Positives = 453/602 (75%), Gaps = 12/602 (1%)

Query: 1   MSPQKRSSSASPPPS---TNDLKQRVITCLNKLADRDTLPVATAELESIARTL-TQDSFS 56
           MS QKRS  +    +    NDLK RVI+CLNKL+DRDTL +AT ELE+IA+TL T D+FS
Sbjct: 1   MSLQKRSPPSLTLSTTTTNNDLKNRVISCLNKLSDRDTLLLATTELETIAKTLATHDAFS 60

Query: 57  SFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPHLSKMISTVSCRLRDPDSSVRS 116
           SFL C+  TDSS +SPVRK CVNLLTLLS SHG+SL+PH SKMIST++ RL DPDS+VR+
Sbjct: 61  SFLTCIYNTDSSCRSPVRKHCVNLLTLLSNSHGNSLAPHFSKMISTLTRRLHDPDSAVRA 120

Query: 117 ACVAATTAMSLNITKPSFSVLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNPEVEQL 176
           ACV ATTAMS  ITKP FS LSKPLIE++ VE+D N Q+G A+CLAAAI+AAP PE+E L
Sbjct: 121 ACVEATTAMSSQITKPPFSTLSKPLIEIMTVEKDFNCQIGSALCLAAAIEAAPQPELEML 180

Query: 177 RKLLPRLGKAVRIEGFKAKAAVLGVIGSVVRVGGARSKGVLDWLVPCLVEFLCCDDWATR 236
           RK+LPRLGK VR +GFKAKAA+L VIGS+V VGGA+SKGVLDWL+PCLVEFL CDDW++R
Sbjct: 181 RKMLPRLGKLVRGDGFKAKAALLSVIGSIVSVGGAKSKGVLDWLMPCLVEFLSCDDWSSR 240

Query: 237 KAAAEVLGKVAVFDKDLATEYKRSCLAALETRRFDKVKIVRETMNRSLEMWKEVPGVCEE 296
           KAAAEVLGK+AV +K+LA E+K  CL+ LE RRFDKVK VRETMNR+LE+WK+VPGV +E
Sbjct: 241 KAAAEVLGKLAVAEKELAKEHKAVCLSCLENRRFDKVKAVRETMNRTLELWKQVPGVSDE 300

Query: 297 VSSPSPSKSFSIDNGSSGCFPSITKSSQNVGLRTPQPKKMVPTSRSPASDSSYGTTSKTE 356
           VS PS SK  SIDN  S  FPS   +S  VG   P PKK V  +RSP SDSS  TT++ +
Sbjct: 301 VSVPSQSKFSSIDNAISESFPSAPHNSNEVGFNHPVPKKTVLANRSPLSDSSVVTTARKQ 360

Query: 357 ISFKSNNRKSGASILCKSADGKSSDWKVEIAVPRTPSSIGTCEVHNRTSDSKDAKLGEVE 416
              K  N  S  S+  KS   ++S WK+EIA+P+     G CE   +  D    + GE  
Sbjct: 361 SPAKCINDNSKTSMFRKSEHKETSAWKIEIALPQ---DTGGCEEDIKRQDFGGFESGEDV 417

Query: 417 NNVNCQPEKKMVIYSKIRDDKMYKCGGFKSGSRVVPYSDDE---MSDFVHHNGIDEDFDY 473
           NN  C+PE K V+++ IR DK++K GGF+SGSRVVP +DD+     D   +N  +E  + 
Sbjct: 418 NNGKCRPETKRVLFNSIRKDKLHKSGGFRSGSRVVPCNDDDDCYSKDVEVNNPTEESIEN 477

Query: 474 PKDPEDLSLIREQLLQIENQQSSLFDLLQRFIGSSQSGMNSLETRVHGLEMALDEISYDL 533
            KD EDLSLI +QL+QIENQQS L DLLQ+FIGSSQ G+NSLETRV+GLEMALDEISYDL
Sbjct: 478 SKDIEDLSLIHDQLIQIENQQSHLLDLLQKFIGSSQHGINSLETRVNGLEMALDEISYDL 537

Query: 534 ALSNGRILNNNAAENTCCKLPGAEFLSSKFWRRAEGRSSTSRFSSSGNILPLHSGSNTLD 593
           ALS GR+ N ++A+NTCCKLPG   L SKFWRR EG+SSTSRFS  G+I  LH+  N  D
Sbjct: 538 ALSTGRLPNMDSADNTCCKLPGT--LCSKFWRRTEGQSSTSRFSFPGSIGSLHAAQNIRD 595

Query: 594 KD 595
           +D
Sbjct: 596 RD 597

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224110978|ref|XP_002315702.1| predicted protein [Populus trichocarpa] gi|222864742|gb|EEF01873.1| predicted protein [Populus trichocarpa]

 Score =  664 bits (1713), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 355/569 (62%), Positives = 422/569 (74%), Gaps = 19/569 (3%)

Query: 1   MSPQKRSSSASPPPSTNDLKQRVITCLNKLADRDTLPVATAELESIARTL-TQDSFSSFL 59
           MSP ++      PP  NDLK RVI CLNKL+DRDT+ VAT ELESIA+ L T DSFS FL
Sbjct: 1   MSPLQK------PPVANDLKHRVIICLNKLSDRDTVSVATTELESIAKNLSTPDSFSHFL 54

Query: 60  NCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPHLSKMISTVSCRLRDPDSSVRSACV 119
           NC+  TDSSSKSPVRKQCV+LLTLLSRSHG+SLSPHLSKMIST++ RLRDPDS+VRSACV
Sbjct: 55  NCIHNTDSSSKSPVRKQCVSLLTLLSRSHGNSLSPHLSKMISTITRRLRDPDSAVRSACV 114

Query: 120 AATTAMSLNITKPSFSVLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNPEVEQLRKL 179
            AT AMS  IT P FS LSKPLI+L+ ++QD+N+Q+G A+CLAA I+AAP PEVEQLRK+
Sbjct: 115 EATFAMSSQITDPPFSTLSKPLIDLLTIDQDLNAQIGAALCLAAVIEAAPEPEVEQLRKV 174

Query: 180 LPRLGKAVRIEGFKAKAAVLGVIGSVVRVGGARSKGVLDWLVPCLVEFLCCDDWATRKAA 239
           LPRLGK V+ EGFKAKAA+L VI S+V VGGA SKG+LDWLVPCLVEFLC +DWA RKAA
Sbjct: 175 LPRLGKLVKGEGFKAKAALLSVIRSIVGVGGASSKGILDWLVPCLVEFLCSEDWAARKAA 234

Query: 240 AEVLGKVAVFDKDLATEYKRSCLAALETRRFDKVKIVRETMNRSLEMWKEVPGVCEEVSS 299
           AE LGKVA  +K LA E+K +CL +LETRRFDKVK+VRETMNR+LE+WKEVPG+ +E S 
Sbjct: 235 AEALGKVASIEKKLAKEHKATCLTSLETRRFDKVKVVRETMNRTLELWKEVPGISQESSV 294

Query: 300 PSPSKSFSIDNGSSGCFPSITKSSQNVGLRTPQPKKMVPTSRSPASDSSYGTTSKTEISF 359
           PS S      N    C  S +K+S++VG RTP  KK VP  R P SD+S  T +K +   
Sbjct: 295 PSQSTY----NVVGICISSASKNSKDVGFRTPLSKKTVPAIRFPPSDASPVTAAKKQSPA 350

Query: 360 KSNNRKSGASILCKSADGKSSDWKVEIAVPRTPSSIGTCEVHNRTSDSKDAKLGEVENNV 419
           KSN+  S   +L K    + S WK+EIA P      G     +  +DS+    G+  +  
Sbjct: 351 KSNDHNSKTGMLHKLGHDRHSAWKIEIATPE-----GKVSGDDTRNDSEVLGSGQNGDGT 405

Query: 420 NCQPEKKMVIYSKIRDDKMYKCGGFKSGSRVVPYSDDE--MSDFVHHNGIDEDF-DYPKD 476
           +   E + V++  IRDDK  K GG KSGSRVVP+ +DE   +  V  +   EDF +  KD
Sbjct: 406 SSMRETRRVLFGSIRDDKWNKFGGLKSGSRVVPFQEDENCYNKVVEVSSSAEDFYENHKD 465

Query: 477 PEDLSLIREQLLQIENQQSSLFDLLQRFIGSSQSGMNSLETRVHGLEMALDEISYDLALS 536
            EDLSLIREQL+QIENQQSSL DLLQ +IG SQ G+NSLETRVHGLEMA++EISYDLA+S
Sbjct: 466 YEDLSLIREQLIQIENQQSSLLDLLQGYIGRSQVGINSLETRVHGLEMAVNEISYDLAVS 525

Query: 537 NGRILNNNAAENTCCKLPGAEFLSSKFWR 565
           +GRI   N AENTCC LPGAEFLSSKFWR
Sbjct: 526 SGRIPKTNYAENTCCNLPGAEFLSSKFWR 554

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224102491|ref|XP_002312697.1| predicted protein [Populus trichocarpa] gi|222852517|gb|EEE90064.1| predicted protein [Populus trichocarpa]

 Score =  664 bits (1713), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 360/572 (62%), Positives = 427/572 (74%), Gaps = 15/572 (2%)

Query: 3   PQKRSSSASPPPSTNDLKQRVITCLNKLADRDTLPVATAELESIARTLTQ-DSFSSFLNC 61
           PQK      PP  TNDLK RVI CLNKL+DRDTL VA  ELESIA+ LT  DSF  FLNC
Sbjct: 3   PQK------PPAVTNDLKPRVIACLNKLSDRDTLLVAATELESIAKNLTTPDSFLHFLNC 56

Query: 62  LQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPHLSKMISTVSCRLRDPDSSVRSACVAA 121
           +  TDSSSKSPVRKQCV+LLTLLSRSHG+SLSPHLSKMIST++ RLRDPDS+VRSACV A
Sbjct: 57  IHNTDSSSKSPVRKQCVSLLTLLSRSHGNSLSPHLSKMISTITRRLRDPDSAVRSACVEA 116

Query: 122 TTAMSLNITKPSFSVLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNPEVEQLRKLLP 181
           T+AMS  IT P FS LS+PLI+L+ V+QD N+Q+G A+CLAAAI+AAP PEVE LRK+LP
Sbjct: 117 TSAMSSQITDPPFSTLSRPLIDLLTVDQDFNAQIGAALCLAAAIEAAPEPEVEHLRKVLP 176

Query: 182 RLGKAVRIEGFKAKAAVLGVIGSVVRVGGARSKGVLDWLVPCLVEFLCCDDWATRKAAAE 241
           RLGK V+ EGFKAKAA+L +IGS+V VGGA SKG+LDWLVPCLVEFL  +DW  RKAAAE
Sbjct: 177 RLGKLVKGEGFKAKAALLSLIGSIVGVGGASSKGLLDWLVPCLVEFLSSEDWTARKAAAE 236

Query: 242 VLGKVAVFDKDLATEYKRSCLAALETRRFDKVKIVRETMNRSLEMWKEVPGVCEEVSSPS 301
            LGKVA  +K LA E+K +CL +LETRRFDKVK+VRETMNR+LE+WKEVPG+ EE+S PS
Sbjct: 237 ALGKVASMEKKLAKEHKATCLTSLETRRFDKVKVVRETMNRTLELWKEVPGISEEISVPS 296

Query: 302 PSKSFSIDNGSSGCFPSITKSSQNVGLRTPQPKKMVPTSRSPASDSSYGTTSKTEISFKS 361
            S   SIDN    C  + +K+S+++G +TP  KK VP +RSP  D+S+ T +K +   KS
Sbjct: 297 QSTCSSIDNAVGICISTTSKNSKDIGFKTPLSKKTVPANRSPPPDASFMTAAKKQSPAKS 356

Query: 362 NNRKSGASILCKSADGKSSDWKVEIAVPRTPSSIGTCEVHNRTSDSKDAKLGEVENNVNC 421
           N+  S      K +  + S WK+EIA P    + G    H    DS     G+  ++ N 
Sbjct: 357 NDSNSKTGTSHKLSHDRHSAWKIEIATP-PGKACGDVTGH----DSGVLGSGQNVDDTNS 411

Query: 422 QPEKKMVIYSKIRDDKMYKCGGFKSGSRVVPYSDDE--MSDFVHHNGIDEDF-DYPKDPE 478
            PE K V++S I  DK +K  G KSGSRVVP   DE   S  V  +   EDF +  KD E
Sbjct: 412 TPETKCVLFSSILVDKRHKYDGLKSGSRVVPIQGDENCYSKDVEVSSSTEDFYENHKDYE 471

Query: 479 DLSLIREQLLQIENQQSSLFDLLQRFIGSSQSGMNSLETRVHGLEMALDEISYDLALSNG 538
           DLSLIREQL+QIENQQSSL DLLQRF+GSSQSG+NSLETRVHGLEMA++EISYDLA+S+G
Sbjct: 472 DLSLIREQLIQIENQQSSLLDLLQRFMGSSQSGINSLETRVHGLEMAVNEISYDLAVSSG 531

Query: 539 RILNNNAAENTCCKLPGAEFLSSKFWRRAEGR 570
           RI   ++ ENTCCKLPGAEFLSSK WRR E R
Sbjct: 532 RIPRTDSVENTCCKLPGAEFLSSKLWRRTECR 563

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449458125|ref|XP_004146798.1| PREDICTED: microtubule-associated protein TORTIFOLIA1-like [Cucumis sativus] gi|449518027|ref|XP_004166045.1| PREDICTED: microtubule-associated protein TORTIFOLIA1-like [Cucumis sativus]

 Score =  642 bits (1657), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 341/589 (57%), Positives = 429/589 (72%), Gaps = 23/589 (3%)

Query: 15  STNDLKQRVITCLNKLADRDTLPVATAELESIARTLTQDSFSSFLNCLQTTDSSSKSPVR 74
           + +DLKQRVI CLNKL DRDTL +A  ELESIA+ LT DSFSSFL+C+  TD+SSKSPVR
Sbjct: 21  ANHDLKQRVIACLNKLEDRDTLAMAANELESIAKALTYDSFSSFLSCIHNTDASSKSPVR 80

Query: 75  KQCVNLLTLLSRSHGDSLSPHLSKMISTVSCRLRDPDSSVRSACVAATTAMSLNITKPSF 134
           KQCV L+ LLS+SHGD+LSP LSKMISTV  RLRD DS++RSACV AT  MS  ITKP F
Sbjct: 81  KQCVYLIGLLSQSHGDALSPFLSKMISTVVRRLRDSDSTIRSACVDATALMSSQITKPPF 140

Query: 135 SVLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNPEVEQLRKLLPRLGKAVRIEGFKA 194
           SV  KPL+E + +EQD+NSQ+G A+CLAAA++AAP+P+V QLRK L +LGK  + EGFKA
Sbjct: 141 SVFLKPLMETLTLEQDLNSQIGSALCLAAAVEAAPDPDVSQLRKNLTKLGKLAKNEGFKA 200

Query: 195 KAAVLGVIGSVVRVGGARSKGVLDWLVPCLVEFLCCDDWATRKAAAEVLGKVAVFDKDLA 254
           KAA+L +IGS++ VGGA S+ V+DWLVPC+VEFL  DDWA RKAAAE LG+VAV ++DLA
Sbjct: 201 KAALLVLIGSIIAVGGATSRSVMDWLVPCIVEFLSNDDWAVRKAAAETLGRVAVAERDLA 260

Query: 255 TEYKRSCLAALETRRFDKVKIVRETMNRSLEMWKEVPGVCEEVSSPSPSKSFSIDNGSSG 314
            +YK SC+ +L++RRFDK+K+VRETMN++LE+WKE+P    ++S+         DNG+ G
Sbjct: 261 ADYKASCIISLDSRRFDKIKVVRETMNQTLELWKEIPDASGDIST---------DNGNGG 311

Query: 315 CFPSITKSSQNVGLRTPQPKKMVPTSRSPASDSSYGTTSKTEISFKSNNRKSGASILCKS 374
           CFP  +  S    LRTP  KK VPTSRS   D S  T SK +IS K N  K+ ++ + K 
Sbjct: 312 CFPPPSTCSPEQNLRTPL-KKTVPTSRSSPLDVSRVTNSK-KISPK-NIGKNSSTPISKL 368

Query: 375 ADGKSSDWKVEIAVPRTPSSIGTCEVHNRTSDSKDAKLGEVENNVNCQPEKKMVIYSKIR 434
              KSS+W VEIAV  +PSS    E +     S++    E   N N +   K V+Y+ +R
Sbjct: 369 ERQKSSNWSVEIAVSNSPSSKFASENNAPGGGSENIDFQE---NENSRLNAKRVLYNNVR 425

Query: 435 DDKMYKCGGFKSGSRVVPYSDDEM--------SDFVHHNGIDEDFDYPKDPEDLSLIREQ 486
           D+K+ K    +SGSRVVP+ + +         SD    +  +E F   K+ ED+SLIR+Q
Sbjct: 426 DEKVNKSSNLRSGSRVVPFEEHDNIQEDESRDSDVTVGSSSEETFGSHKEFEDISLIRDQ 485

Query: 487 LLQIENQQSSLFDLLQRFIGSSQSGMNSLETRVHGLEMALDEISYDLALSNGRILNNNAA 546
           L QIENQQSSL +LLQ FIGSSQSGMNSLE RVHGLEMALDEISYDL LS+GR+ N++ A
Sbjct: 486 LRQIENQQSSLLNLLQNFIGSSQSGMNSLEKRVHGLEMALDEISYDLGLSSGRVPNSSFA 545

Query: 547 ENTCCKLPGAEFLSSKFWRRAEGRSSTSRFSSSGNILPLHSGSNTLDKD 595
           EN+CCKLPGAEFLSSKFWRRAEGR S+S+F S+  +   +   +TLD+D
Sbjct: 546 ENSCCKLPGAEFLSSKFWRRAEGRYSSSKFCSTTQVSSPNDPHHTLDRD 594

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296086478|emb|CBI32067.3| unnamed protein product [Vitis vinifera]

 Score =  625 bits (1612), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 347/589 (58%), Positives = 439/589 (74%), Gaps = 16/589 (2%)

Query: 15  STNDLKQRVITCLNKLADRDTLPVATAELESIARTLTQDSFSSFLNCLQTTDSSSKSPVR 74
           ST DLK RVITCLNKL+DRDTL V TAELESIAR LT DSFS FL+CL  TDSS KSPVR
Sbjct: 17  STRDLKHRVITCLNKLSDRDTLAVGTAELESIARNLTHDSFSPFLSCLYGTDSSEKSPVR 76

Query: 75  KQCVNLLTLLSRSHGDSLSPHLSKMISTVSCRLRDPDSSVRSACVAATTAMSLNITKPSF 134
           KQCV LL +LS +HGDSLSPHLSKM+S V  RLRD DS+VR ACV A   MS  ITKP F
Sbjct: 77  KQCVRLLGVLSETHGDSLSPHLSKMLSNVVRRLRDSDSAVRLACVDAVGVMSSQITKPPF 136

Query: 135 SVLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNPEVEQLRKLLPRLGKAVRIEGFKA 194
           S   KPL + IL+EQD N Q+G A+C+AAAI+AAP+PE EQL KLLPRL K  + E F+A
Sbjct: 137 SAFLKPLTDSILLEQDYNLQIGSALCIAAAIEAAPDPEPEQLLKLLPRLLKLAKSESFRA 196

Query: 195 KAAVLGVIGSVVRVGGARSKGVLDWLVPCLVEFLCCDDWATRKAAAEVLGKVAVFDKDLA 254
           K A+L +IGS++  GGA ++GVL+ LVPCLVEFL  +DWA RKA+AE L ++A+ ++DLA
Sbjct: 197 KPALLSLIGSIIGAGGASTRGVLNSLVPCLVEFLSSEDWAARKASAEALARLALVERDLA 256

Query: 255 TEYKRSCLAALETRRFDKVKIVRETMNRSLEMWKEVPGVCEEVSSPSPSKSFSIDNGSSG 314
           TE+K S L++LE+RRFDKVK+VR+TMNR+L++WKE+P     +   SPSK+ S DNG+ G
Sbjct: 257 TEFKSSSLSSLESRRFDKVKVVRDTMNRTLDLWKELPCDSNGLLPLSPSKASSKDNGAGG 316

Query: 315 CFPSITKSSQNVGLRTPQPKKMVPTSRSPASDSSYGTTSKTEISFK-SNNRKSGASILCK 373
           CFP  +K S +VG  TPQPKK++PT RSP SD+S  TT++     + SNN KS  ++  K
Sbjct: 317 CFPPASKISCDVGFETPQPKKIIPT-RSPPSDNSLVTTARKRSPLQSSNNGKSTTAMFRK 375

Query: 374 SADGKSSDWKVEIAVPRTPSSIGTCEVHNRTSDSKDAKL--GEVENNVNC---QPEKKMV 428
               K SDWKVE+AVP   SS   CE      D K   L   + E N NC   +PE   V
Sbjct: 376 LDCKKPSDWKVEVAVPHPSSSKVACE-----DDLKRRYLVVSDSEENGNCGDSRPETNRV 430

Query: 429 IYSKIRDDKMYKCGGFKSGSRVVPYSDDEMSD--FVHHNGIDED-FDYPKDPEDLSLIRE 485
           ++SKI ++KM+K G  +SGSR+VP+ ++  S+   V  N  +E+ ++  KD EDLSLIR+
Sbjct: 431 LFSKISNEKMHKFGCLRSGSRIVPFHENNNSESAVVDSNATEEEIYENQKDIEDLSLIRK 490

Query: 486 QLLQIENQQSSLFDLLQRFIGSSQSGMNSLETRVHGLEMALDEISYDLALSNGRILNNNA 545
           QL+QIENQQSS+ +LLQRFIG+SQSG+NSLETRV+GLEM L+EIS+DLA+S+GR+ N+++
Sbjct: 491 QLIQIENQQSSMLNLLQRFIGNSQSGINSLETRVNGLEMVLEEISFDLAISSGRVSNSDS 550

Query: 546 AENTCCKLPGAEFLSSKFWRRAEGRSSTSRFSSSGNILPLHSGSNTLDK 594
           A NTCCKLPGAEFLSSKFW+R EG  +TSRFSS+G+I  L + +N  +K
Sbjct: 551 AGNTCCKLPGAEFLSSKFWKRTEGH-TTSRFSSTGSIQALTTINNMPNK 598

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225424811|ref|XP_002267941.1| PREDICTED: microtubule-associated protein SPIRAL2-like [Vitis vinifera]

 Score =  625 bits (1611), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 347/589 (58%), Positives = 439/589 (74%), Gaps = 16/589 (2%)

Query: 15  STNDLKQRVITCLNKLADRDTLPVATAELESIARTLTQDSFSSFLNCLQTTDSSSKSPVR 74
           ST DLK RVITCLNKL+DRDTL V TAELESIAR LT DSFS FL+CL  TDSS KSPVR
Sbjct: 18  STRDLKHRVITCLNKLSDRDTLAVGTAELESIARNLTHDSFSPFLSCLYGTDSSEKSPVR 77

Query: 75  KQCVNLLTLLSRSHGDSLSPHLSKMISTVSCRLRDPDSSVRSACVAATTAMSLNITKPSF 134
           KQCV LL +LS +HGDSLSPHLSKM+S V  RLRD DS+VR ACV A   MS  ITKP F
Sbjct: 78  KQCVRLLGVLSETHGDSLSPHLSKMLSNVVRRLRDSDSAVRLACVDAVGVMSSQITKPPF 137

Query: 135 SVLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNPEVEQLRKLLPRLGKAVRIEGFKA 194
           S   KPL + IL+EQD N Q+G A+C+AAAI+AAP+PE EQL KLLPRL K  + E F+A
Sbjct: 138 SAFLKPLTDSILLEQDYNLQIGSALCIAAAIEAAPDPEPEQLLKLLPRLLKLAKSESFRA 197

Query: 195 KAAVLGVIGSVVRVGGARSKGVLDWLVPCLVEFLCCDDWATRKAAAEVLGKVAVFDKDLA 254
           K A+L +IGS++  GGA ++GVL+ LVPCLVEFL  +DWA RKA+AE L ++A+ ++DLA
Sbjct: 198 KPALLSLIGSIIGAGGASTRGVLNSLVPCLVEFLSSEDWAARKASAEALARLALVERDLA 257

Query: 255 TEYKRSCLAALETRRFDKVKIVRETMNRSLEMWKEVPGVCEEVSSPSPSKSFSIDNGSSG 314
           TE+K S L++LE+RRFDKVK+VR+TMNR+L++WKE+P     +   SPSK+ S DNG+ G
Sbjct: 258 TEFKSSSLSSLESRRFDKVKVVRDTMNRTLDLWKELPCDSNGLLPLSPSKASSKDNGAGG 317

Query: 315 CFPSITKSSQNVGLRTPQPKKMVPTSRSPASDSSYGTTSKTEISFK-SNNRKSGASILCK 373
           CFP  +K S +VG  TPQPKK++PT RSP SD+S  TT++     + SNN KS  ++  K
Sbjct: 318 CFPPASKISCDVGFETPQPKKIIPT-RSPPSDNSLVTTARKRSPLQSSNNGKSTTAMFRK 376

Query: 374 SADGKSSDWKVEIAVPRTPSSIGTCEVHNRTSDSKDAKL--GEVENNVNC---QPEKKMV 428
               K SDWKVE+AVP   SS   CE      D K   L   + E N NC   +PE   V
Sbjct: 377 LDCKKPSDWKVEVAVPHPSSSKVACE-----DDLKRRYLVVSDSEENGNCGDSRPETNRV 431

Query: 429 IYSKIRDDKMYKCGGFKSGSRVVPYSDDEMSD--FVHHNGIDED-FDYPKDPEDLSLIRE 485
           ++SKI ++KM+K G  +SGSR+VP+ ++  S+   V  N  +E+ ++  KD EDLSLIR+
Sbjct: 432 LFSKISNEKMHKFGCLRSGSRIVPFHENNNSESAVVDSNATEEEIYENQKDIEDLSLIRK 491

Query: 486 QLLQIENQQSSLFDLLQRFIGSSQSGMNSLETRVHGLEMALDEISYDLALSNGRILNNNA 545
           QL+QIENQQSS+ +LLQRFIG+SQSG+NSLETRV+GLEM L+EIS+DLA+S+GR+ N+++
Sbjct: 492 QLIQIENQQSSMLNLLQRFIGNSQSGINSLETRVNGLEMVLEEISFDLAISSGRVSNSDS 551

Query: 546 AENTCCKLPGAEFLSSKFWRRAEGRSSTSRFSSSGNILPLHSGSNTLDK 594
           A NTCCKLPGAEFLSSKFW+R EG  +TSRFSS+G+I  L + +N  +K
Sbjct: 552 AGNTCCKLPGAEFLSSKFWKRTEGH-TTSRFSSTGSIQALTTINNMPNK 599

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357486347|ref|XP_003613461.1| Microtubule-associated protein TORTIFOLIA1 [Medicago truncatula] gi|355514796|gb|AES96419.1| Microtubule-associated protein TORTIFOLIA1 [Medicago truncatula]

 Score =  584 bits (1506), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 326/589 (55%), Positives = 425/589 (72%), Gaps = 16/589 (2%)

Query: 9   SASPPPSTNDLKQRVITCLNKLADRDTLPVATAELESIARTLTQDSFSSFLNCLQTTDSS 68
           +A+ PP   +L+QRVITCLNKL+DRDTL  AT ELESIA+TL  D+FSSFL+C+  TDSS
Sbjct: 15  TATTPP---NLRQRVITCLNKLSDRDTLAGATVELESIAKTLNHDTFSSFLSCIHNTDSS 71

Query: 69  SKSPVRKQCVNLLTLLSRSHGDSLSPHLSKMISTVSCRLRDPDSSVRSACVAATTAMSLN 128
           +KSPVRKQCVNLLTLLS+ HGD+LSP LSKMI+TV  R+ DPD+ VRSACV A   MSL 
Sbjct: 72  TKSPVRKQCVNLLTLLSKFHGDALSPFLSKMIATVLRRIHDPDTVVRSACVEAVAEMSLR 131

Query: 129 ITKPSFSV-LSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNPEVEQLRK-LLPRLGKA 186
           IT+P+F+V   +P +E + VEQDVN+Q+GGA+CLAAA++AAP  +VE LR+  LPRLGK 
Sbjct: 132 ITRPAFAVAFLRPFMEALTVEQDVNAQIGGALCLAAAVEAAPEVDVELLRRNTLPRLGKV 191

Query: 187 VRIEGFKAKAAVLGVIGSVVRVGGARSKGVLDWLVPCLVEFLCCDDWATRKAAAEVLGKV 246
           ++ E  KAKA VL +IGSVV VGGA S+G ++WLVP LVE L  +DW  RKA+AE LGKV
Sbjct: 192 LKTESCKAKAPVLVLIGSVVSVGGAASRGTMNWLVPYLVELLGSEDWTVRKASAEALGKV 251

Query: 247 AVFDKDLATEYKRSCLAALETRRFDKVKIVRETMNRSLEMWKEVPGVCEEVSSPSPSKSF 306
           A  ++D AT++K  CL +L+ RRFDKVK+VRETMNR L+MWKEV  V E VSSP  S   
Sbjct: 252 ASVERDFATQHKVLCLESLQNRRFDKVKVVRETMNRVLDMWKEVKDVSENVSSPVKSACA 311

Query: 307 SI--DNGSSGCFPSITKSSQNVGLRTPQPKKMVPTSRSPASDSSYGTTSKTEISFKSNNR 364
           S+  D+G+  C    T+SS  VG +  QPKKMVP++RSP S  S  ++ K E    +N++
Sbjct: 312 SVGTDDGNGRCG---TRSSP-VGSKFSQPKKMVPSNRSPPSTGSILSSGKRESPLNNNDK 367

Query: 365 KSGASILCKSADGKSSDWKVEIAVPRTPSSIGTCEVHNRTSDSKDAKLGEVENNVNCQPE 424
            S   +L + A  K SD K+E  + ++  S  T E   +  D + +K    +N  N + +
Sbjct: 368 NSRMGMLHQQAHKKLSDEKLESPISKSSLSNMTKEDDIKRCDFEASKPAPNQNATNLRAD 427

Query: 425 KKMVIYSKIRDDKMYKCGGFKSGSRVVP-YSDDEMSDFVHHNGIDEDFDYPKDPEDLSLI 483
            K V  +K+ D+K+ K GG K  +RVVP Y DD++   V  N  +E  + P+D EDLSLI
Sbjct: 428 VKRVFGNKMSDEKIRKFGGSK--ARVVPCYDDDDLETDVTVNNDNEICESPQDVEDLSLI 485

Query: 484 REQLLQIENQQSSLFDLLQRFIGSSQSGMNSLETRVHGLEMALDEISYDLALSNGRILNN 543
           R+QL+QIENQQS+L DLLQRFIG+SQ+GMN LETRV+GLEMALDEISYDLA+S+GRI N 
Sbjct: 486 RDQLVQIENQQSNLLDLLQRFIGTSQNGMNLLETRVYGLEMALDEISYDLAVSSGRIPNT 545

Query: 544 NAAENTCCKLPGAEFLSSKFWRRAEGRSSTSR--FSSSGNILPLHSGSN 590
           +A ++ CCKLPG +FLSSKFW++ + R +TSR  F SS +   +H+ ++
Sbjct: 546 DAIDDMCCKLPGTDFLSSKFWKKTDSRYTTSRLSFGSSASTNLVHNATD 594

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225457188|ref|XP_002280600.1| PREDICTED: microtubule-associated protein TORTIFOLIA1-like [Vitis vinifera]

 Score =  569 bits (1466), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 307/567 (54%), Positives = 393/567 (69%), Gaps = 6/567 (1%)

Query: 15  STNDLKQRVITCLNKLADRDTLPVATAELESIARTLTQDSFSSFLNCLQTTDSSSKSPVR 74
           S  +LK RV TCL KL+DRDT  +A  ELESIARTLTQD    FL+C+  TD S KSPVR
Sbjct: 8   SPQNLKHRVFTCLTKLSDRDTQSIAATELESIARTLTQDLLPPFLSCIHQTDPSDKSPVR 67

Query: 75  KQCVNLLTLLSRSHGDSLSPHLSKMISTVSCRLRDPDSSVRSACVAATTAMSLNITKPSF 134
           KQCV LL +LS +HGD+LSP LSKM+S +  RLRDPDS+VRS C+ A +AMS +ITKP F
Sbjct: 68  KQCVRLLGILSETHGDALSPFLSKMLSNLIRRLRDPDSAVRSTCINAISAMSSHITKPPF 127

Query: 135 SVLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNPEVEQLRKLLPRLGKAVRIEGFKA 194
           S + KPL E +  EQD N+Q+G ++CLA+AIDAAP+P+   LR+LLPR+ K ++ + FKA
Sbjct: 128 SSIVKPLAETLFTEQDHNAQIGASLCLASAIDAAPDPDPALLRRLLPRIEKLLKCDSFKA 187

Query: 195 KAAVLGVIGSVVRVGGARSKGVLDWLVPCLVEFLCCDDWATRKAAAEVLGKVAVFDKDLA 254
           K AVL +IGS+V  GGA S  V+  LVPC V FL  +DWA RKAAAEVL K+AV ++D+ 
Sbjct: 188 KPAVLTLIGSIVEAGGATSYNVVKNLVPCAVGFLSSEDWAARKAAAEVLVKLAVMERDML 247

Query: 255 TEYKRSCLAALETRRFDKVKIVRETMNRSLEMWKEVPGVCEEVSSPSPSKSFSIDNGSSG 314
           +E+K SCL   E RRFDKVK VR+TMN+ L  WKE+P V  +VS P  S+S S +N S G
Sbjct: 248 SEFKSSCLKTFEARRFDKVKAVRDTMNQMLGAWKEIPDVSNDVSPPPQSQSSSKENASDG 307

Query: 315 CFPSITKSSQNVGLRTP-QPKKMVPTSRSPASDSSYGTTSKTEISFKSNNRKSGASILCK 373
            +P  +++S   G   P   KK +PTS SP  +SS  TT    +  +    KSG+++  K
Sbjct: 308 RYPLESRNSCTGGSEVPLMRKKSIPTSISPQLNSSSATT----VRRRGPVDKSGSAMFRK 363

Query: 374 SADGKSSDWKVEIAVPRTPSSIGTCEVHNRTSDSKDAKLGEVENNVNCQPEKKMVIYSKI 433
               K+SD KVE+  P  PS +   E   +  D K  + GE E N   +PE + V+++K 
Sbjct: 364 LERKKASDLKVEVTAPHAPSVMRIHEDGLKKKDEKAPERGENEKNRFTKPETRRVLFTKN 423

Query: 434 RDDKMYKCGGFKSGSRVVPYSDDEMSDFVH-HNGIDEDFDYPKDPEDLSLIREQLLQIEN 492
            DDKM K GGF+SGSRVVP  ++     V   N  +      K+ EDLSLIR+QL+QIEN
Sbjct: 424 SDDKMNKFGGFRSGSRVVPCQEENSETTVEVSNTTEVPHRNHKECEDLSLIRKQLVQIEN 483

Query: 493 QQSSLFDLLQRFIGSSQSGMNSLETRVHGLEMALDEISYDLALSNGRILNNNAAENTCCK 552
           QQSSL +LL++F+GSSQ+G+ SLETRVHGLE+ALDEIS+DLA+SN R+ + + A  TCC 
Sbjct: 484 QQSSLLNLLEKFMGSSQNGLRSLETRVHGLELALDEISFDLAVSNRRMSSTDTAGATCCM 543

Query: 553 LPGAEFLSSKFWRRAEGRSSTSRFSSS 579
           LPGA+FLSSKFWR+ EGR STSRFS S
Sbjct: 544 LPGADFLSSKFWRKTEGRGSTSRFSPS 570

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356497808|ref|XP_003517749.1| PREDICTED: microtubule-associated protein SPIRAL2-like [Glycine max]

 Score =  564 bits (1454), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 325/591 (54%), Positives = 412/591 (69%), Gaps = 33/591 (5%)

Query: 5   KRSSSASPPP-----STNDLKQRVITCLNKLADRDTLPVATAELESIARTLTQDSFSSFL 59
           +R S + PPP     ST++L+QRVITCLNKL+DRDTL  A AELESIARTL  DSFSSFL
Sbjct: 4   RRHSLSGPPPLSGTESTHNLRQRVITCLNKLSDRDTLAGAAAELESIARTLNHDSFSSFL 63

Query: 60  NCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPHLSKMISTVSCRLRDPDSSVRSACV 119
           +C+  TDSSSKSPVRKQCV+LL +LSR HG++LSP +SKM++TV  RLRD DS+VRS CV
Sbjct: 64  SCIHNTDSSSKSPVRKQCVHLLNVLSRFHGEALSPFISKMLATVLRRLRDTDSAVRSECV 123

Query: 120 AATTAMSLNITKPSFSV-LSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNPEVEQLRK 178
            A  +MS  IT+P FS    +PL++ +  EQ+ N+Q+G A+CLAAA++A+P+P+ E LR+
Sbjct: 124 DAVASMSSRITRPPFSAAFLRPLMDALAQEQEANAQIGAALCLAAAVEASPDPDAEALRR 183

Query: 179 -LLPRLGKAVRIEGFKAKAAVLGVIGSVVRVGGARSKGVLDWLVPCLVEFLCCDDWATRK 237
             LPRLGK V+ +  +A+AA+L +IGSVV  GGA S+G ++WLVPCLVEFL  +DW  RK
Sbjct: 184 SALPRLGKLVKSDACRARAALLVLIGSVVGAGGASSRGAVNWLVPCLVEFLGSEDWTVRK 243

Query: 238 AAAEVLGKVAVFDKDLATEYKRSCLAALETRRFDKVKIVRETMNRSLEMWKEVPGVCEEV 297
           AAAE L KVA  ++DLA+++K  CL +L+ RRFDK+K+VRETMNR+LE WKEV       
Sbjct: 244 AAAEALAKVASVERDLASQHKALCLDSLQNRRFDKIKVVRETMNRALETWKEVTEDAPAS 303

Query: 298 SSPSPSKSFSIDNGSSGCFPSITKSSQNVGLRTPQPKKMVPTSRSPASDSSYGTTSKTEI 357
              S   S   D+G S C   +TKSS NVG ++    K V  +RSPAS  S+ ++ K E 
Sbjct: 304 QVKSECASVGTDDGKSQC---VTKSSPNVGFKSSS--KTVIANRSPASVVSFMSSIKRES 358

Query: 358 SFKSNNRKSGASILCKSADGKSSDWKVEIAVPRTPSSIGTCEVHNRTSDSKDAKLGEVE- 416
           S KSN R      + +    KSSD K+E   P   SS      H+  S   D K   VE 
Sbjct: 359 SLKSNERHLRMGTMHQQGQEKSSDEKLE--TPFLGSS------HSNMSREDDIKRCNVEV 410

Query: 417 ---------NNVNCQPEKKMVIYSKIRDDKMYKCGGFKSGSRVVP-YSDDEMSDFVHHNG 466
                    N VN + E K V++SK+ D+KM +  G KS  RVVP   DD++   V  N 
Sbjct: 411 SKPPPYQNQNGVNSRAEIKRVLFSKMSDEKMRRFSGSKS--RVVPCIDDDDLDADVIVNN 468

Query: 467 IDEDFDYPKDPEDLSLIREQLLQIENQQSSLFDLLQRFIGSSQSGMNSLETRVHGLEMAL 526
            +E  + P+D E+ +LIREQLLQIENQQS+L DLLQRFIGSSQSGMNSLE+RVHGLEMAL
Sbjct: 469 ANEVCESPQDVEEFALIREQLLQIENQQSNLLDLLQRFIGSSQSGMNSLESRVHGLEMAL 528

Query: 527 DEISYDLALSNGRILNNNAAENTCCKLPGAEFLSSKFWRRAEGRSSTSRFS 577
           DEIS+DLA+S GR+ N +A E+TCCKLPG +FLSSKFW++ EGR STSRFS
Sbjct: 529 DEISHDLAVSGGRVSNIDATEDTCCKLPGTDFLSSKFWKKTEGRYSTSRFS 579

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|8778871|gb|AAF79870.1|AC000348_23 T7N9.27 [Arabidopsis thaliana]

 Score =  551 bits (1421), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 314/560 (56%), Positives = 395/560 (70%), Gaps = 34/560 (6%)

Query: 18  DLKQRVITCLNKLADRDTLPVATAELESIARTLTQDSFSSFLNCLQTTDSSSKSPVRKQC 77
           DLKQRVI CLNKLADRDTL +A+AEL+SIAR LT DSFS FLNC+  TDSS KSPVRKQC
Sbjct: 34  DLKQRVIACLNKLADRDTLALASAELDSIARNLTHDSFSPFLNCIHNTDSSVKSPVRKQC 93

Query: 78  VNLLTLLSRSHGDSLSPHLSKMISTVSCRLRDPDSSVRSACVAATTAMSLNITKPSFSVL 137
           V LL++LSR HGDSL+PHL+KM+STV  RLRDPDSSVRSAC  AT  MS ++T+  F+ +
Sbjct: 94  VALLSVLSRYHGDSLTPHLAKMVSTVIRRLRDPDSSVRSACAVATADMSAHVTRQPFASV 153

Query: 138 SKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNPEVEQLRKLLPRLGKAVRIEGFKAKAA 197
           +KPLIE ++ E D N Q+G A+CLAA++DAA +PE EQLRK LP++GK ++ +GFKAKAA
Sbjct: 154 AKPLIETLIQEGDSNLQIGAALCLAASVDAATDPESEQLRKSLPKIGKLLKSDGFKAKAA 213

Query: 198 VLGVIGSVVRVGGARSKGVLDWLVPCLVEFLCCDDWATRKAAAEVLGKVAVFDKDLATEY 257
           +L  +GS++  GGA +K VLDWLVP L+EFL  +DWA RK+AAE LGKVA  + DLA++Y
Sbjct: 214 LLSAVGSIITAGGAGTKPVLDWLVPVLIEFLSSEDWAARKSAAEALGKVATAE-DLASQY 272

Query: 258 KRSCLAALETRRFDKVKIVRETMNRSLEMWKEVPGVCEEVSSPSPSKSFSIDNGSSGCFP 317
           K++C  ALE+RRFDKVK VRETMNR+L +WKEV    ++ +S SPS+S S D+G+ GCF 
Sbjct: 273 KKTCTTALESRRFDKVKSVRETMNRALNLWKEVS--TDDEASLSPSRS-STDDGNIGCFS 329

Query: 318 SITKSSQ-NVGLRTPQPKKMVPT-SRSPA--SDSSYGTTSKTEISFKSNNRKSGASILCK 373
           S+T+SS  +VGL++ +PKK+ P   RSP+   + SY  T + E   K N  +   ++L +
Sbjct: 330 SVTRSSTIDVGLKSARPKKVTPIMKRSPSLPVNRSYAATRQKENLPKRN--QGNMTMLVE 387

Query: 374 SADGKSSDWKVEIAVPRTPSSIGTCEVHNRTSDSKDAKLGEVENNVNCQPEKKMVIYSKI 433
            A   S D K     P   SS  T E  N  S   D                K  I  K 
Sbjct: 388 EA--SSVDNKGPHFTPVKKSSEETEEKAN--SGGPDI--------------IKHTISEKS 429

Query: 434 RDD-KMYKCGGFKSGSRVVPYSDDEMSDFVHHNGIDEDFDYPKDPEDLSLIREQLLQIEN 492
           R+D K+   GG +SGSRV P SDD   D V  N  D+  +  KD E+LSLIREQL  IEN
Sbjct: 430 REDSKVSSFGGLRSGSRVAPCSDD--GDSV-KNCKDDVEESKKDSEELSLIREQLALIEN 486

Query: 493 QQSSLFDLLQRFIGSSQSGMNSLETRVHGLEMALDEISYDLALSNGRILNNNA--AENTC 550
           QQSSL DLLQ+F+G+SQSG+ SLE+RV GLEMALDEIS DLA+SNGR+  N++  A ++C
Sbjct: 487 QQSSLLDLLQKFMGTSQSGIQSLESRVSGLEMALDEISCDLAVSNGRVPRNSSGCAGDSC 546

Query: 551 CKLPGAEFLSSKFWRRAEGR 570
            KLPG EFLS KFWR+ E R
Sbjct: 547 SKLPGTEFLSPKFWRKTEER 566

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	595
TAIR|locus:2205739	625	AT1G27210 [Arabidopsis thalian	0.662	0.630	0.546	3.4e-143
TAIR|locus:2025906	498	AT1G59850 "AT1G59850" [Arabido	0.615	0.734	0.524	3.5e-91
TAIR|locus:2154144	615	AT5G62580 [Arabidopsis thalian	0.670	0.648	0.400	1.8e-64
TAIR|locus:2136467	864	TOR1 "TORTIFOLIA 1" [Arabidops	0.880	0.606	0.312	6.3e-54
TAIR|locus:2060161	820	AT2G07170 [Arabidopsis thalian	0.611	0.443	0.338	7.4e-54
TAIR|locus:2036411	821	AT1G50890 "AT1G50890" [Arabido	0.857	0.621	0.291	7.2e-50

TAIR|locus:2205739 AT1G27210 [Arabidopsis thaliana (taxid:3702)]

 Score = 1033 (368.7 bits), Expect = 3.4e-143, Sum P(2) = 3.4e-143
 Identities = 223/408 (54%), Positives = 285/408 (69%)

Query:     1 MSPQKRSSS-ASPPPSTN-DLKQRVITCLNKLADRDTLPVATAELESIARTLTQDSFSSF 58
             +SP   S+S +S  PST  DLKQRVI CLNKLADRDTL +A+AEL+SIAR LT DSFS F
Sbjct:    15 LSPSSSSTSPSSQSPSTPPDLKQRVIACLNKLADRDTLALASAELDSIARNLTHDSFSPF 74

Query:    59 LNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPHLSKMISTVSCRLRDPDSSVRSAC 118
             LNC+  TDSS KSPVRKQCV LL++LSR HGDSL+PHL+KM+STV  RLRDPDSSVRSAC
Sbjct:    75 LNCIHNTDSSVKSPVRKQCVALLSVLSRYHGDSLTPHLAKMVSTVIRRLRDPDSSVRSAC 134

Query:   119 VAATTAMSLNITKPSFSVLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNPEVEQLRK 178
               AT  MS ++T+  F+ ++KPLIE ++ E D N Q+G A+CLAA++DAA +PE EQLRK
Sbjct:   135 AVATADMSAHVTRQPFASVAKPLIETLIQEGDSNLQIGAALCLAASVDAATDPESEQLRK 194

Query:   179 LLPRLGKAVRIEGFKAKAAVLGVIGSVVRVGGARSKGVLDWLVPCLVEFLCCDDWATRKA 238
              LP++GK ++ +GFKAKAA+L  +GS++  GGA +K VLDWLVP L+EFL  +DWA RK+
Sbjct:   195 SLPKIGKLLKSDGFKAKAALLSAVGSIITAGGAGTKPVLDWLVPVLIEFLSSEDWAARKS 254

Query:   239 AAEVLGKVAVFDKDLATEYKRSCLAALETRRFDKVKIVRETMNRSLEMWKXXXXXXXXXX 298
             AAE LGKVA  + DLA++YK++C  ALE+RRFDKVK VRETMNR+L +WK          
Sbjct:   255 AAEALGKVATAE-DLASQYKKTCTTALESRRFDKVKSVRETMNRALNLWKEVSTDDEASL 313

Query:   299 XXXXXXXXXIDNGSSGCFPSITKSSQ-NVGLRTPQPKKMVPT-SRSPAS--DSSYGTTSK 354
                       D+G+ GCF S+T+SS  +VGL++ +PKK+ P   RSP+   + SY  T +
Sbjct:   314 SPSRSST---DDGNIGCFSSVTRSSTIDVGLKSARPKKVTPIMKRSPSLPVNRSYAATRQ 370

Query:   355 TEISFKSNNRKSGASILCKSADGKSSDWKVEIAVPRTPSSIGTCEVHN 402
              E   K N  +   ++L + A   S D K     P   SS  T E  N
Sbjct:   371 KENLPKRN--QGNMTMLVEEAS--SVDNKGPHFTPVKKSSEETEEKAN 414

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2025906 AT1G59850 "AT1G59850" [Arabidopsis thaliana (taxid:3702)]

 Score = 909 (325.0 bits), Expect = 3.5e-91, P = 3.5e-91
 Identities = 196/374 (52%), Positives = 254/374 (67%)

Query:     2 SPQKRSS-SASPPPST-NDLKQRVITCLNKLADRDTLPVATAELESIARTLTQDSFSSFL 59
             S Q RSS S S P  T  DLKQRVI CLN+L+DRDTL +A AEL+SIA  L+ ++FS F+
Sbjct:     3 SVQIRSSPSHSQPAMTVTDLKQRVIACLNRLSDRDTLALAAAELDSIALNLSPETFSLFI 62

Query:    60 NCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPHLSKMISTVSCRLRDPDSSVRSACV 119
             NCLQ+TDSS+KSPVRK CV+LL++LSRSHGDSL+PHLSKM+STV  RLRDPDSSVR+ACV
Sbjct:    63 NCLQSTDSSAKSPVRKHCVSLLSVLSRSHGDSLAPHLSKMVSTVLRRLRDPDSSVRAACV 122

Query:   120 AATTAMSLNITKPSFSVLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNPEVEQLRKL 179
             AA+  M+ NIT   FS+L  P+IE ++ + D N+Q+  AMCLAAA+DAA  P+VEQL+K 
Sbjct:   123 AASVDMTTNITGQPFSILFGPMIETVIHDCDPNAQISAAMCLAAAVDAADEPDVEQLQKA 182

Query:   180 LPRLGKAVRIEGFKAKAAVLGVIGSVV-RVGGARS-KGVLDWLVPCLVEFLCCDDWATRK 237
             LP++GK ++ EGFKAKA +LG IG+V+  VGG  S K VLDWL+P + EFL  DDW  RK
Sbjct:   183 LPKIGKLLKSEGFKAKAELLGAIGTVIGAVGGRNSEKAVLDWLLPNVSEFLSSDDWRARK 242

Query:   238 AAAEVLGKVAVFDKDLATEYKRSCLAALETRRFDKVKIVRETMNRSLEMWKXXXXXXXXX 297
             AAAE + +VA+ +++LA  YK++CL  LE+RRFDKVK+VRETMNR+L +WK         
Sbjct:   243 AAAEAMARVAMVEEELAPLYKKTCLGILESRRFDKVKLVRETMNRTLGLWKQLEGDSTEV 302

Query:   298 XXXXXXXXXXID--NGSSGCFPSITKSSQNVGLRTPQPKKMVPTSRSPASDSSYGTTSKT 355
                           + +SG   S T   ++  L TP   K          D+      + 
Sbjct:   303 SESSSSSKSASSGLSATSGK-RSNTLKGKDRNLNTPLSSKSNDVEPLDRGDTPKDVEQEA 361

Query:   356 EISFKSNNRKS-GA 368
              +S +  NR + GA
Sbjct:   362 VVSKEKRNRSTLGA 375

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2154144 AT5G62580 [Arabidopsis thaliana (taxid:3702)]

 Score = 657 (236.3 bits), Expect = 1.8e-64, P = 1.8e-64
 Identities = 172/429 (40%), Positives = 242/429 (56%)

Query:    15 STNDLKQRVITCLNKLADRDTLPVATAELESIARTLTQDSFS----SFLNCLQTTDSSSK 70
             +T + KQ +   L KL DRDT  +A  EL+ +AR +   S S    SF++ + + D+  K
Sbjct:     2 ATKNSKQNMSVLLTKLGDRDTFTMAARELDLMARQIDPSSSSGNLQSFISVILSVDTGDK 61

Query:    71 SPVRKQCVNLLTLLSRSHG-DSLSPHLSKMISTVSCRLRDPDSSVRSACVAATTAMSLNI 129
               VRK C++LL +LS S   +SLSP LSK+++ ++ RLRDPDSS+RS CVAA +A+S   
Sbjct:    62 PAVRKHCIHLLAVLSVSLPLNSLSPFLSKILTRITRRLRDPDSSIRSTCVAAVSAISSRT 121

Query:   130 TKPSF-SVLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNPEVEQL-RKLLPRLGKAV 187
             TKP F S   KPL + +  EQ+VN+Q+G A+CLAAAID+A +P+  +L + LLPRL K V
Sbjct:   122 TKPPFYSAFMKPLADTLFTEQEVNAQIGAALCLAAAIDSASDPDPVRLGQTLLPRLEKLV 181

Query:   188 RIEGFKAKAAVLGVIGSVVRVGGAR----SKGVLDWLVPCLVEFLCCDDWATRKAAAEVL 243
             +   FKAK+A + VIGSV+  GG      S G L  LV CL+ FL  +DWA RKAAAE L
Sbjct:   182 KCNAFKAKSAGVVVIGSVIGAGGLSGTSVSSGGLKGLVDCLLSFLVSEDWAARKAAAEAL 241

Query:   244 GKVAVFDKDLATEYKRSCLAALETRRFDKVKIVRETMNRSLEMWKXXXXXXXXXXXXXXX 303
             G++A  +++   E+K  CL   E+R++DKVK VRE MN+ +E WK               
Sbjct:   242 GRLATMERNELGEFKAKCLKIFESRKYDKVKAVREVMNQMMEAWKQVPDLSEEVSPPRSN 301

Query:   304 XXXXIDNGSSGCFPSITKSSQNVGLRTPQPKKMVPTSRSPASDSSYGTTSKTEISFKSNN 363
                  D  S G +PS       VG  TP   +    +RS    SS  TT++ + + KS +
Sbjct:   302 ASSKGD-ASDGRYPS----GSRVG-STPAKSRTHLVNRSTPPGSSLATTARKQANRKSID 355

Query:   364 RK--SGASILCKSADGKSSDWKVEIAVPRTPSSIGT---CEVHNR----TSDSKD---AK 411
             +K  S  + L K    +  +WK   A   T  S+     C+ H+     TS S      K
Sbjct:   356 QKKTSLTASLTKPNVRRRLEWKAGGASIPTGVSLEDEQHCD-HDENAKETSHSSHNTVQK 414

Query:   412 LGEVENNVN 420
             LG V +++N
Sbjct:   415 LGGVSSSLN 423

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2136467 TOR1 "TORTIFOLIA 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 562 (202.9 bits), Expect = 6.3e-54, P = 6.3e-54
 Identities = 182/582 (31%), Positives = 285/582 (48%)

Query:    18 DLKQRVITCLNKLADRDTLPVATAELESIARTLTQDSFSSFLNCLQTTDSSSKSPVRKQC 77
             +LKQ+++T ++KLADRDT  +A  +LE   ++LT ++   FLNCL  + S  K  V+K+C
Sbjct:    41 ELKQKILTSISKLADRDTYQIAVEDLEKTIQSLTPETLPMFLNCLYDSCSDPKPAVKKEC 100

Query:    78 VNLLTLLSRSHGDSLSPHLSKMISTVSCRLRDPDSSVRSAC---VAATTAMSL------- 127
             ++LL+ +   H DS + HL+K+I+ +  RL+D DS VR AC   + A + + L       
Sbjct:   101 LHLLSYVCSLHCDSTAAHLTKIIAQIVKRLKDSDSGVRDACRDTIGALSGIYLKGKEEGT 160

Query:   128 NITKPSFSV--LSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNPEVEQLRKLLPRLGK 185
             N    S +V    KPL E  + EQ+   Q G +MC+A  +++A +P V   +KL PR+ K
Sbjct:   161 NTGSASLAVGLFVKPLFEA-MGEQNKVVQSGASMCMARMVESAASPPVTSFQKLCPRICK 219

Query:   186 AVRIEGFKAKAAVLGVIGSVVRVGGARSKGVLDWLVPCLVEFLCCDDWATRKAAAEVLGK 245
              +    F AKA++L V+ S+ +VG    +  L+ L+  + + L   DW TRKAAAE L  
Sbjct:   220 LLSNSSFLAKASLLPVVSSLSQVGAIAPQS-LESLLESIHDCLGSTDWVTRKAAAETLTA 278

Query:   246 VAVFDKDLATEYKRSCLAALETRRFDKVKIVRETMNRSLEMWKXXXXXXXXXXXXXXXXX 305
             +A     L  E   S +  LET RFDK+K VRE++  +L++WK                 
Sbjct:   279 LASHSSGLIKEKTDSTITVLETCRFDKIKPVRESVTEALQLWKKISGKY----------- 327

Query:   306 XXIDNGSSGCFPSITKSSQNVGLRTPQPKK--MVPTSRSPASDSSYGTTSKTEISF-KSN 362
               +D  S     S   +S+ +G      K+  +    +  ASD S  T S    S  K  
Sbjct:   328 --VDGASDD---SKLSASEQLGSEKNGEKRSNLADLMKKEASDGS--TLSPDSASKGKGC 380

Query:   363 NRKSGASILCKSADGKSS-DWKVEI--AVPRTPSSIGTCEVHNRTSDSKDAKLGEVENNV 419
               +    +L K A   S  D+  E    + R  S         + +D +++ L ++ N +
Sbjct:   381 FPEKAVGLLKKKAPVLSDKDFNPEFFQRLERRQSVEVVVPRRCKNNDEEESGLDDL-NAM 439

Query:   420 NCQPEKKMVIYSKIRDDKMYKCGGFKSGSRVVPYSDDEMSDFV-------HH---NGIDE 469
                   K    +   DDK  K G F         S D+ +  V       HH   +  D 
Sbjct:   440 GSSNRLK----NTQADDKQVK-GRFDGNGSQARTSGDDKAGVVNGKETPGHHAPVSNTDN 494

Query:   470 DFD--YPKDPEDLSLIREQLLQIENQQSSLFDLLQRFIGSSQSGMNSLETRVHGLEMALD 527
               +  +  +  + S I+ QLLQ+E QQ++L ++LQ FIG S   M +LE RV GLE  ++
Sbjct:   495 QSEGSFTSNRGNWSAIQRQLLQLERQQTNLMNMLQEFIGGSHDSMVTLEGRVRGLERIVE 554

Query:   528 EISYDLALSNGRILNNNAAENTCCKLPGAEFLSSKFWRRAEG 569
             +++ DL++S+GR  N  A          A + + K+  RA G
Sbjct:   555 DMARDLSISSGRRANLTAGFGKYNSF--ANYPTGKYNGRAPG 594

GO:0009507 "chloroplast" evidence=ISM

GO:0007275 "multicellular organismal development" evidence=IMP

GO:0009826 "unidimensional cell growth" evidence=IMP

GO:0010031 "circumnutation" evidence=IMP

GO:0008017 "microtubule binding" evidence=IDA

GO:0010005 "cortical microtubule, transverse to long axis" evidence=IDA

GO:0000226 "microtubule cytoskeleton organization" evidence=RCA

GO:0000278 "mitotic cell cycle" evidence=RCA

GO:0006396 "RNA processing" evidence=RCA

TAIR|locus:2060161 AT2G07170 [Arabidopsis thaliana (taxid:3702)]

 Score = 487 (176.5 bits), Expect = 7.4e-54, Sum P(2) = 7.4e-54
 Identities = 136/402 (33%), Positives = 200/402 (49%)

Query:    18 DLKQRVITCLNKLADRDTLPVATAELESIARTLTQDSFSSFLNCLQTTDSSSKSPVRKQC 77
             +LK++V+  LNKLADRDT      ELE     L  D  S FL+C+  TDS  KS VRK+C
Sbjct:    26 ELKKKVVIALNKLADRDTYQRGVDELEKTVEHLAPDKVSCFLSCILDTDSEQKSAVRKEC 85

Query:    78 VNLLTLLSRSHGDSLSPHLSKMISTVSCRLRDPDSSVRSACVAATTAMSLNIT---KPSF 134
             + L+  L+R H   + P+L KM+S++  RL+DPDS VR AC+     ++  ++     +F
Sbjct:    86 IRLMGTLARFHEGLVGPYLGKMVSSIVKRLKDPDSVVRDACIETMGVLASKMSCYEDQNF 145

Query:   135 SV---LSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNPEVEQLRKLLPRLGKAVRIEG 191
              V   L KPL E I  +Q+   Q G A+CLA  ID++P   V  ++++L R  K +    
Sbjct:   146 GVFVSLVKPLFEAI-GDQNKYVQSGAALCLARVIDSSPEAPVAIIQRMLMRTVKLLNNSH 204

Query:   192 FKAKAAVLGVIGSVVRVGGARSKGVLDWLVPCLVEFLCCDDWATRKAAAEVLGKVAVFDK 251
             F AK AV+ +  S++  GGA SK VL   +    + L   DW TRKAA+  L ++A   +
Sbjct:   205 FIAKPAVIELNRSIILAGGATSKSVLSSAMSSFQDALKNKDWTTRKAASVALMEIAATGE 264

Query:   252 DLATEYKRSCLAALETRRFDKVKIVRETMNRSLEMWKXXXXXXXXXXXXXXXXXXXIDNG 311
                   K SC+ +LE+ RFDKVK VR+++  +L+ WK                     NG
Sbjct:   265 KFLGPLKASCICSLESCRFDKVKPVRDSVILALKYWKGVPGSDSPEPSETESSVKESYNG 324

Query:   312 ---SSGCFPSI---TKSSQNVGLRTPQPKKMVPTS-RSPASDSSYGTTSKTEISFKSNNR 364
                SS  F +     K   ++   T   +K VP S R P +             +  + R
Sbjct:   325 ARESSELFSTSDFKVKDGMSIKYVTDVTRKKVPVSARQPPT------------RYNDDPR 372

Query:   365 KSGASILCKSADGKSSDWKVEIAVPRTPSSIGTCEVHNRTSD 406
             KS              DW +EIAVP + S +   +++N  S+
Sbjct:   373 KSN-----------QDDWHIEIAVPES-SFVSKVDLYNEESE 402

GO:0005737 "cytoplasm" evidence=ISM

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0030117 "membrane coat" evidence=IEA

GO:0000910 "cytokinesis" evidence=RCA

GO:0006270 "DNA replication initiation" evidence=RCA

GO:0006275 "regulation of DNA replication" evidence=RCA

GO:0006346 "methylation-dependent chromatin silencing" evidence=RCA

GO:0007017 "microtubule-based process" evidence=RCA

GO:0008283 "cell proliferation" evidence=RCA

GO:0009909 "regulation of flower development" evidence=RCA

GO:0016458 "gene silencing" evidence=RCA

GO:0031048 "chromatin silencing by small RNA" evidence=RCA

GO:0034968 "histone lysine methylation" evidence=RCA

GO:0051567 "histone H3-K9 methylation" evidence=RCA

GO:0051726 "regulation of cell cycle" evidence=RCA

TAIR|locus:2036411 AT1G50890 "AT1G50890" [Arabidopsis thaliana (taxid:3702)]

 Score = 524 (189.5 bits), Expect = 7.2e-50, P = 7.2e-50
 Identities = 163/559 (29%), Positives = 269/559 (48%)

Query:     6 RSSSA-SPPPSTNDLKQRVITCLNKLADRDTLPVATAELESIARTL--TQDSFSSFLNCL 62
             RSS A S   +  +LKQR++T L++L DRDT  +A  +LE I  ++  + +     L+CL
Sbjct:    23 RSSVAVSSHSAMVELKQRILTSLSRLGDRDTYQIAVDDLEKIVVSVPDSPEILPVLLHCL 82

Query:    63 QTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPHLSKMISTVSCRLRDPDSSVRSACVAAT 122
               + S  K+PV+++ + LL+ L  S+ D     L+K+IS +  RL+D D+ VR AC  A 
Sbjct:    83 FDSSSDLKAPVKRESIRLLSFLCLSYTDLSFSQLAKIISHIVKRLKDADNGVRDACRDAI 142

Query:   123 TAMSLNITKPS------------FSVLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPN 170
              ++S    K                + +KPL E  + EQ+ + Q G A+C+   ID+A  
Sbjct:   143 GSLSAQFLKEKEVENGNYVGSSLVGLFAKPLFEA-MAEQNKSLQSGAAICMGKMIDSATE 201

Query:   171 PEVEQLRKLLPRLGKAVRIEGFKAKAAVLGVIGSVVRVGGARSKGVLDWLVPCLVEFLCC 230
             P V   +KL PR+ K +    +  KA++L V+GS+ +VG    +  L+ L+  + E L C
Sbjct:   202 PPVAAFQKLCPRISKLLNSPNYITKASLLPVVGSLSQVGAIAPQS-LESLLHSIHECLGC 260

Query:   231 DDWATRKAAAEVLGKVAVFDKDLATEYKRSCLAALETRRFDKVKIVRETMNRSLEMWKXX 290
              +W TRKAAA+VL  +AV    L  +   S L ALE  RFDK+K VRE+++ +L +WK  
Sbjct:   261 TNWVTRKAAADVLISLAVHSSSLVADKTDSTLTALEACRFDKIKPVRESLSEALNVWKNI 320

Query:   291 XXXXXXXXXXXXXXXXXIDNGSSGCFPSITKSSQNVGLRTPQPKKMVPTSRSPASDSSYG 350
                               D  S  C   + ++ +   +   +   ++  S    S SS  
Sbjct:   321 AGKGESGTMDDQK-----DVSSEQCI--LERNGETDSVSCEEAGLVMQGSCDGLSSSSDS 373

Query:   351 TTSKTEISFKSNNRKSGASI----LCKSADGKSSDWKVEIAVPRTPSSIGTCEVHNRTSD 406
              +    I  K   R +G  +      K     S D  VE+ +P    +      ++ T D
Sbjct:   374 ISKAVLILRKKAPRLTGKDLNPEFFQKLEKRGSGDMPVEVILPSRQKNSS----NSNTED 429

Query:   407 SKDAKLGEVENNVN--CQP---EKKMVIYSKIRDDKMY--KCGGFKSGSRVVPYSDDEMS 459
               DA    + +  N  C+      K   +     +K    +  G +S  R     D + +
Sbjct:   430 ESDANTSVLRSRSNGLCRTAGVHTKQRHFGDFAREKWVDERMNGGESRLRAF---DGDHT 486

Query:   460 DFVHHNGIDEDFDYPKDPEDLSLIREQLLQIENQQSSLFDLLQRFIGSSQSGMNSLETRV 519
             + +  +  +   ++P  P     ++ QLL +E QQ+ + ++LQ F+G S  GM SLE RV
Sbjct:   487 EVIQADTSENRGNWP--P-----LQRQLLHLERQQTHIMNMLQDFMGGSHDGMISLENRV 539

Query:   520 HGLEMALDEISYDLALSNG 538
              GLE  ++E+S ++++ +G
Sbjct:   540 RGLERIVEEMSREMSIQSG 558


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.314   0.129   0.371    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      595       566   0.00079  120 3  11 23  0.43    34
                                                     35  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  6
  No. of states in DFA:  621 (66 KB)
  Total size of DFA:  302 KB (2155 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  53.20u 0.10s 53.30t   Elapsed:  00:00:03
  Total cpu time:  53.20u 0.10s 53.30t   Elapsed:  00:00:03
  Start:  Sat May 11 11:04:46 2013   End:  Sat May 11 11:04:49 2013

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: gw1.VIII.2894.1 hypothetical protein (563 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	595
pfam13513	55	pfam13513, HEAT_EZ, HEAT-like repeat	0.001

>gnl|CDD|205691 pfam13513, HEAT_EZ, HEAT-like repeat

 Score = 37.0 bits (86), Expect = 0.001
 Identities = 15/52 (28%), Positives = 26/52 (50%)

Query: 195 KAAVLGVIGSVVRVGGARSKGVLDWLVPCLVEFLCCDDWATRKAAAEVLGKV 246
           + A    +G++   G    +  +  L+P L+  L  DD   R+AAA  LG++
Sbjct: 4   REAAALALGALAGGGPELLRPAVPELLPALLPLLKDDDDEVREAAAWALGRI 55

The HEAT repeat family is related to armadillo/beta-catenin-like repeats (see pfam00514). These EZ repeats are found in subunits of cyanobacterial phycocyanin lyase and other proteins and probably carry out a scaffolding role. Length = 55

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	595
KOG2023	885	consensus Nuclear transport receptor Karyopherin-b	100.0
KOG2171	1075	consensus Karyopherin (importin) beta 3 [Nuclear s	99.97
KOG2023	885	consensus Nuclear transport receptor Karyopherin-b	99.74
KOG1241	859	consensus Karyopherin (importin) beta 1 [Nuclear s	99.44
KOG2171	1075	consensus Karyopherin (importin) beta 3 [Nuclear s	99.44
COG5215	858	KAP95 Karyopherin (importin) beta [Intracellular t	99.22
PRK09687	280	putative lyase; Provisional	99.13
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	99.03
KOG1242	569	consensus Protein containing adaptin N-terminal re	99.02
PRK09687	280	putative lyase; Provisional	99.0
KOG1242	569	consensus Protein containing adaptin N-terminal re	98.94
PF12348	228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	98.91
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	98.84
KOG1241	859	consensus Karyopherin (importin) beta 1 [Nuclear s	98.81
PF13513	55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	98.79
KOG0213	1172	consensus Splicing factor 3b, subunit 1 [RNA proce	98.76
PF01602	526	Adaptin_N: Adaptin N terminal region; InterPro: IP	98.74
PF12755	97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	98.72
KOG1059	877	consensus Vesicle coat complex AP-3, delta subunit	98.67
PF12348	228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	98.6
KOG2032	533	consensus Uncharacterized conserved protein [Funct	98.51
KOG0212	675	consensus Uncharacterized conserved protein [Funct	98.5
KOG0166	514	consensus Karyopherin (importin) alpha [Intracellu	98.49
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	98.42
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	98.39
KOG0915	1702	consensus Uncharacterized conserved protein [Funct	98.38
KOG0915	1702	consensus Uncharacterized conserved protein [Funct	98.36
PF12755	97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	98.36
KOG0212	675	consensus Uncharacterized conserved protein [Funct	98.36
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	98.34
KOG0166	514	consensus Karyopherin (importin) alpha [Intracellu	98.34
PF01602	526	Adaptin_N: Adaptin N terminal region; InterPro: IP	98.33
PF10508	503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	98.32
COG5215	858	KAP95 Karyopherin (importin) beta [Intracellular t	98.28
KOG0211	759	consensus Protein phosphatase 2A regulatory subuni	98.27
KOG1824	1233	consensus TATA-binding protein-interacting protein	98.23
PF10508	503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	98.22
KOG0213	1172	consensus Splicing factor 3b, subunit 1 [RNA proce	98.17
PF12460	415	MMS19_C: RNAPII transcription regulator C-terminal	98.13
PF13646	88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	98.1
KOG1824	1233	consensus TATA-binding protein-interacting protein	98.09
cd00020	120	ARM Armadillo/beta-catenin-like repeats. An approx	97.97
KOG1820	815	consensus Microtubule-associated protein [Cytoskel	97.97
KOG1991	1010	consensus Nuclear transport receptor RANBP7/RANBP8	97.95
KOG2259	823	consensus Uncharacterized conserved protein [Funct	97.87
COG1413	335	FOG: HEAT repeat [Energy production and conversion	97.86
PTZ00429	746	beta-adaptin; Provisional	97.85
PF12717	178	Cnd1: non-SMC mitotic condensation complex subunit	97.82
PF05004	309	IFRD: Interferon-related developmental regulator (	97.81
COG1413	335	FOG: HEAT repeat [Energy production and conversion	97.79
KOG1248	1176	consensus Uncharacterized conserved protein [Funct	97.76
cd00020	120	ARM Armadillo/beta-catenin-like repeats. An approx	97.69
PTZ00429	746	beta-adaptin; Provisional	97.67
COG5181	975	HSH155 U2 snRNP spliceosome subunit [RNA processin	97.65
TIGR02270	410	conserved hypothetical protein. Members are found	97.64
KOG0211	759	consensus Protein phosphatase 2A regulatory subuni	97.64
KOG2956	516	consensus CLIP-associating protein [General functi	97.5
PF12460	415	MMS19_C: RNAPII transcription regulator C-terminal	97.49
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	97.48
KOG2956	516	consensus CLIP-associating protein [General functi	97.47
KOG4224	550	consensus Armadillo repeat protein VAC8 required f	97.45
KOG2933	334	consensus Uncharacterized conserved protein [Funct	97.44
PF02985	31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	97.43
KOG1967	1030	consensus DNA repair/transcription protein Mms19 [	97.37
KOG4224	550	consensus Armadillo repeat protein VAC8 required f	97.37
KOG1248	1176	consensus Uncharacterized conserved protein [Funct	97.33
TIGR02270	410	conserved hypothetical protein. Members are found	97.31
PF13646	88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	97.3
PF12717	178	Cnd1: non-SMC mitotic condensation complex subunit	97.29
PF05004	309	IFRD: Interferon-related developmental regulator (	97.29
COG5064	526	SRP1 Karyopherin (importin) alpha [Intracellular t	97.27
PF13251	182	DUF4042: Domain of unknown function (DUF4042)	97.2
COG5181	975	HSH155 U2 snRNP spliceosome subunit [RNA processin	97.12
PF02985	31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	96.94
KOG1943	1133	consensus Beta-tubulin folding cofactor D [Posttra	96.89
PF04826	254	Arm_2: Armadillo-like; InterPro: IPR006911 This en	96.89
PF10274	183	ParcG: Parkin co-regulated protein; InterPro: IPR0	96.72
PF13513	55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	96.7
PF14500	262	MMS19_N: Dos2-interacting transcription regulator	96.57
KOG1020	1692	consensus Sister chromatid cohesion protein SCC2/N	96.41
KOG1062	866	consensus Vesicle coat complex AP-1, gamma subunit	96.22
smart00802	107	UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1.	96.2
KOG2022	982	consensus Nuclear transport receptor LGL2 (importi	96.17
PF08167	165	RIX1: rRNA processing/ribosome biogenesis	96.17
PF12719	298	Cnd3: Nuclear condensing complex subunits, C-term	96.14
COG5064	526	SRP1 Karyopherin (importin) alpha [Intracellular t	96.09
KOG1078	865	consensus Vesicle coat complex COPI, gamma subunit	96.05
KOG2274	1005	consensus Predicted importin 9 [Intracellular traf	96.05
PF08064	107	UME: UME (NUC010) domain; InterPro: IPR012993 This	96.05
KOG1060	968	consensus Vesicle coat complex AP-3, beta subunit	96.03
KOG1943	1133	consensus Beta-tubulin folding cofactor D [Posttra	96.02
KOG1820	815	consensus Microtubule-associated protein [Cytoskel	95.96
PF08506	370	Cse1: Cse1; InterPro: IPR013713 The exchange of ma	95.96
COG5096	757	Vesicle coat complex, various subunits [Intracellu	95.89
KOG1058	948	consensus Vesicle coat complex COPI, beta subunit	95.83
COG5240	898	SEC21 Vesicle coat complex COPI, gamma subunit [In	95.78
KOG4653	982	consensus Uncharacterized conserved protein [Funct	95.66
KOG2933	334	consensus Uncharacterized conserved protein [Funct	95.62
PF03378	435	CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: I	95.59
KOG4653	982	consensus Uncharacterized conserved protein [Funct	95.58
COG5656	970	SXM1 Importin, protein involved in nuclear import	95.51
KOG2022	982	consensus Nuclear transport receptor LGL2 (importi	95.34
PF13251	182	DUF4042: Domain of unknown function (DUF4042)	95.29
PF04826	254	Arm_2: Armadillo-like; InterPro: IPR006911 This en	95.23
KOG1967	1030	consensus DNA repair/transcription protein Mms19 [	95.16
KOG0803	1312	consensus Predicted E3 ubiquitin ligase [Posttrans	95.14
PF10274	183	ParcG: Parkin co-regulated protein; InterPro: IPR0	95.12
COG5240	898	SEC21 Vesicle coat complex COPI, gamma subunit [In	95.1
KOG2032	533	consensus Uncharacterized conserved protein [Funct	95.02
KOG1992	960	consensus Nuclear export receptor CSE1/CAS (import	94.98
PF10363	92	DUF2435: Protein of unknown function (DUF2435)	94.9
cd08050	343	TAF6 TATA Binding Protein (TBP) Associated Factor	94.78
KOG0567	289	consensus HEAT repeat-containing protein [General	94.6
KOG0392	1549	consensus SNF2 family DNA-dependent ATPase domain-	94.58
KOG1059	877	consensus Vesicle coat complex AP-3, delta subunit	94.54
KOG1991	1010	consensus Nuclear transport receptor RANBP7/RANBP8	94.52
PF11865	160	DUF3385: Domain of unknown function (DUF3385); Int	94.38
KOG1060	968	consensus Vesicle coat complex AP-3, beta subunit	94.3
COG5095	450	TAF6 Transcription initiation factor TFIID, subuni	94.29
PF12530	234	DUF3730: Protein of unknown function (DUF3730) ; I	94.27
KOG2062	929	consensus 26S proteasome regulatory complex, subun	94.14
KOG2137	700	consensus Protein kinase [Signal transduction mech	94.03
PF11865	160	DUF3385: Domain of unknown function (DUF3385); Int	93.99
KOG1993	978	consensus Nuclear transport receptor KAP120 (impor	93.86
smart00638	574	LPD_N Lipoprotein N-terminal Domain.	93.83
PF12231	372	Rif1_N: Rap1-interacting factor 1 N terminal; Inte	93.76
PF12719	298	Cnd3: Nuclear condensing complex subunits, C-term	93.74
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	93.72
PF08167	165	RIX1: rRNA processing/ribosome biogenesis	93.69
KOG2259	823	consensus Uncharacterized conserved protein [Funct	93.66
COG5116	926	RPN2 26S proteasome regulatory complex component [	93.65
KOG2025	892	consensus Chromosome condensation complex Condensi	93.38
KOG2160	342	consensus Armadillo/beta-catenin-like repeat-conta	93.1
KOG0168	1051	consensus Putative ubiquitin fusion degradation pr	93.07
PF01347	618	Vitellogenin_N: Lipoprotein amino terminal region;	92.93
KOG1061	734	consensus Vesicle coat complex AP-1/AP-2/AP-4, bet	92.81
KOG1020	1692	consensus Sister chromatid cohesion protein SCC2/N	92.7
KOG2025	892	consensus Chromosome condensation complex Condensi	92.65
KOG1062	866	consensus Vesicle coat complex AP-1, gamma subunit	92.44
KOG2160	342	consensus Armadillo/beta-catenin-like repeat-conta	92.43
PF12765	42	Cohesin_HEAT: HEAT repeat associated with sister c	92.41
KOG1837	1621	consensus Uncharacterized conserved protein [Funct	92.2
PF10363	92	DUF2435: Protein of unknown function (DUF2435)	92.18
PF05918	556	API5: Apoptosis inhibitory protein 5 (API5); Inter	92.14
KOG0414	1251	consensus Chromosome condensation complex Condensi	92.12
COG5096	757	Vesicle coat complex, various subunits [Intracellu	91.77
PF00514	41	Arm: Armadillo/beta-catenin-like repeat; InterPro:	91.7
PF08064	107	UME: UME (NUC010) domain; InterPro: IPR012993 This	91.55
KOG2081	559	consensus Nuclear transport regulator [Intracellul	91.52
PF12074	339	DUF3554: Domain of unknown function (DUF3554); Int	91.27
PF10521	282	DUF2454: Protein of unknown function (DUF2454); In	91.09
KOG1993	978	consensus Nuclear transport receptor KAP120 (impor	91.08
KOG2549	576	consensus Transcription initiation factor TFIID, s	91.06
PF14500	262	MMS19_N: Dos2-interacting transcription regulator	90.73
KOG1822	2067	consensus Uncharacterized conserved protein [Funct	90.61
KOG1243	690	consensus Protein kinase [General function predict	90.56
KOG2274	1005	consensus Predicted importin 9 [Intracellular traf	90.36
PF03224	312	V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004	90.08
KOG4535	728	consensus HEAT and armadillo repeat-containing pro	89.88
smart00638	574	LPD_N Lipoprotein N-terminal Domain.	89.63
KOG0413	1529	consensus Uncharacterized conserved protein relate	89.24
PF04118	307	Dopey_N: Dopey, N-terminal; InterPro: IPR007249 Do	89.16
cd00197	115	VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamil	89.02
KOG4524	1014	consensus Uncharacterized conserved protein [Funct	88.89
COG5218	885	YCG1 Chromosome condensation complex Condensin, su	88.57
KOG2149	393	consensus Uncharacterized conserved protein [Funct	88.53
PF12397	121	U3snoRNP10: U3 small nucleolar RNA-associated prot	88.36
KOG1078	865	consensus Vesicle coat complex COPI, gamma subunit	88.33
KOG2137	700	consensus Protein kinase [Signal transduction mech	88.02
PF03378	435	CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: I	87.9
KOG2021	980	consensus Nuclear mRNA export factor receptor LOS1	87.63
smart00802	107	UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1.	87.55
PF08569	335	Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro	87.41
KOG2062	929	consensus 26S proteasome regulatory complex, subun	87.21
COG5656	970	SXM1 Importin, protein involved in nuclear import	87.09
PF08389	148	Xpo1: Exportin 1-like protein; InterPro: IPR013598	87.02
PF12074	339	DUF3554: Domain of unknown function (DUF3554); Int	86.46
cd08050	343	TAF6 TATA Binding Protein (TBP) Associated Factor	86.45
KOG1077	938	consensus Vesicle coat complex AP-2, alpha subunit	86.05
PF12054	441	DUF3535: Domain of unknown function (DUF3535); Int	85.9
COG5116	926	RPN2 26S proteasome regulatory complex component [	85.67
COG5095	450	TAF6 Transcription initiation factor TFIID, subuni	85.52
KOG4413	524	consensus 26S proteasome regulatory complex, subun	85.51
PF08623	169	TIP120: TATA-binding protein interacting (TIP20);	85.5
KOG0392	1549	consensus SNF2 family DNA-dependent ATPase domain-	85.49
PF03224	312	V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004	85.43
PF01347	618	Vitellogenin_N: Lipoprotein amino terminal region;	85.24
KOG1949	1005	consensus Uncharacterized conserved protein [Funct	84.79
PF04510	174	DUF577: Family of unknown function (DUF577); Inter	84.33
KOG4535	728	consensus HEAT and armadillo repeat-containing pro	84.03
KOG1293	678	consensus Proteins containing armadillo/beta-caten	84.0
PF05804	708	KAP: Kinesin-associated protein (KAP)	83.74
KOG1293	678	consensus Proteins containing armadillo/beta-caten	83.61
PF05536	543	Neurochondrin: Neurochondrin	83.12
KOG1061	734	consensus Vesicle coat complex AP-1/AP-2/AP-4, bet	82.85
PF06685	249	DUF1186: Protein of unknown function (DUF1186); In	82.81
PF05804	708	KAP: Kinesin-associated protein (KAP)	82.62
KOG2842	427	consensus Interferon-related protein PC4 like [Cyt	82.52
KOG4413	524	consensus 26S proteasome regulatory complex, subun	82.27
KOG1243	690	consensus Protein kinase [General function predict	82.25
KOG0414	1251	consensus Chromosome condensation complex Condensi	82.13
PLN03076	1780	ARF guanine nucleotide exchange factor (ARF-GEF);	82.1
KOG1992	960	consensus Nuclear export receptor CSE1/CAS (import	81.6
PF10521	282	DUF2454: Protein of unknown function (DUF2454); In	81.21
PF10350	255	DUF2428: Putative death-receptor fusion protein (D	80.96
PF06685	249	DUF1186: Protein of unknown function (DUF1186); In	80.85
PLN03076	1780	ARF guanine nucleotide exchange factor (ARF-GEF);	80.78
KOG0891	2341	consensus DNA-dependent protein kinase [Replicatio	80.09

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.2e-33  Score=308.36  Aligned_cols=236  Identities=21%  Similarity=0.209  Sum_probs=214.8

Q ss_pred             hHHHHHHHHHHHHHhCCcCcHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccchhhHHHHHHHHHhhccCCChhH
Q 046417           35 TLPVATAELESIARTLTQDSFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPHLSKMISTVSCRLRDPDSSV  114 (595)
Q Consensus        35 T~r~A~~~LD~lA~~L~~~~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~PhLpkIL~~IvrrLkD~ds~V  114 (595)
                      -+||.++.||.||..++.+.++.+|+.|.+...++.|.+|+++|++||++||||.+++.||||.++|+++..|.|-.|.|
T Consensus       371 LRkCSAAaLDVLanvf~~elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~g~~p~LpeLip~l~~~L~DKkplV  450 (885)
T KOG2023|consen  371 LRKCSAAALDVLANVFGDELLPILLPLLKEHLSSEEWKVREAGVLALGAIAEGCMQGFVPHLPELIPFLLSLLDDKKPLV  450 (885)
T ss_pred             HhhccHHHHHHHHHhhHHHHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHhhhcccchHHHHHHHHHHhccCccce
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhhhcCCcchhccHHHHHHHhh---cCChhHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhccCc
Q 046417          115 RSACVAATTAMSLNITKPSFSVLSKPLIELILV---EQDVNSQVGGAMCLAAAIDAAPNPEVEQLRKLLPRLGKAVRIEG  191 (595)
Q Consensus       115 R~Ac~~aLg~LA~~l~~~~~~~~l~PLi~aLl~---d~nk~VQ~~AA~cLaaviE~a~d~~~~~L~~Ll~rL~klL~~~~  191 (595)
                      |.++||||++++.|+..++-..||+|+++.|+.   |.||.||++||+|+|.+.|.|.+.++|||..|+..|.++|  ..
T Consensus       451 RsITCWTLsRys~wv~~~~~~~~f~pvL~~ll~~llD~NK~VQEAAcsAfAtleE~A~~eLVp~l~~IL~~l~~af--~k  528 (885)
T KOG2023|consen  451 RSITCWTLSRYSKWVVQDSRDEYFKPVLEGLLRRLLDSNKKVQEAACSAFATLEEEAGEELVPYLEYILDQLVFAF--GK  528 (885)
T ss_pred             eeeeeeeHhhhhhhHhcCChHhhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHH--HH
Confidence            999999999999999876644589998888864   8999999999999999999999999999999999999999  77


Q ss_pred             hhHHHHHH--HHHHHHHHhhcc--cCcCcHHhHHHHHHHhcc--CCCHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHH
Q 046417          192 FKAKAAVL--GVIGSVVRVGGA--RSKGVLDWLVPCLVEFLC--CDDWATRKAAAEVLGKVAVFDKDLATEYKRSCLAAL  265 (595)
Q Consensus       192 ~kaK~alL--sAIgSlA~a~g~--~~~~yl~~lmp~L~e~L~--~dDW~~RkaAaEaLgsIA~avge~f~py~~~~I~~L  265 (595)
                      |+.|+.+|  +|||++|...|.  ..+.|++.+||+|++.|.  +++-..-++.+|||++||.++|.+|.||.++   ++
T Consensus       529 YQ~KNLlILYDAIgtlAdsvg~~Ln~~~YiqiLmPPLi~KW~~lsd~DKdLfPLLEClSsia~AL~~gF~P~~~~---Vy  605 (885)
T KOG2023|consen  529 YQKKNLLILYDAIGTLADSVGHALNKPAYIQILMPPLIEKWELLSDSDKDLFPLLECLSSIASALGVGFLPYAQP---VY  605 (885)
T ss_pred             HhhcceehHHHHHHHHHHHHHHhcCcHHHHHHhccHHHHHHHhcCcccchHHHHHHHHHHHHHHHhccccccCHH---HH
Confidence            88776554  999999995543  357899999999999996  3443667889999999999999999999887   88


Q ss_pred             HhccCCchHHHHHH
Q 046417          266 ETRRFDKVKIVRET  279 (595)
Q Consensus       266 e~crfDKVK~VRda  279 (595)
                      ++|    +.+++..
T Consensus       606 ~Rc----~~il~~t  615 (885)
T KOG2023|consen  606 QRC----FRILQKT  615 (885)
T ss_pred             HHH----HHHHHHH
Confidence            888    7777776

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=3.4e-29  Score=287.60  Aligned_cols=275  Identities=20%  Similarity=0.182  Sum_probs=232.5

Q ss_pred             hHHHHHHHHHhhhcCCC------------C---hHHHHHHHHHHHHHhCCcCc-HHHHHHhhhhcCCCCChHHHHHHHHH
Q 046417           17 NDLKQRVITCLNKLADR------------D---TLPVATAELESIARTLTQDS-FSSFLNCLQTTDSSSKSPVRKQCVNL   80 (595)
Q Consensus        17 ~~lk~rvl~~L~KL~Dr------------D---T~r~A~~~LD~lA~~L~~~~-lp~fL~~L~d~~ss~kp~vRKaaI~l   80 (595)
                      .+|--.++...+.+.|+            |   ++++|.+.||.+|.+|+++. +|++++++.....+++|..|++++++
T Consensus       292 ~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~w~~R~AaL~A  371 (1075)
T KOG2171|consen  292 HTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQSTEWKERHAALLA  371 (1075)
T ss_pred             ccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence            44556666666666544            2   99999999999999999887 99999999999999999999999999


Q ss_pred             HHHHHHHccccchhhHHHHHHHHHhhccCCChhHHHHHHHHHHHhhhhhcCCcch-----hccHH-HHHHHhhcCChhHH
Q 046417           81 LTLLSRSHGDSLSPHLSKMISTVSCRLRDPDSSVRSACVAATTAMSLNITKPSFS-----VLSKP-LIELILVEQDVNSQ  154 (595)
Q Consensus        81 LG~lAEg~gd~I~PhLpkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~~~~~~-----~~l~P-Li~aLl~d~nk~VQ  154 (595)
                      |++++|||++.|.++|++||+.|++.|+||+|.||.|||+++|+|+..+.  +++     ..+.| |+..|-..++..||
T Consensus       372 ls~i~EGc~~~m~~~l~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~--p~iqk~~~e~l~~aL~~~ld~~~~~rV~  449 (1075)
T KOG2171|consen  372 LSVIAEGCSDVMIGNLPKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQ--PEIQKKHHERLPPALIALLDSTQNVRVQ  449 (1075)
T ss_pred             HHHHHcccHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhc--HHHHHHHHHhccHHHHHHhcccCchHHH
Confidence            99999999999999999999999999999999999999999999999884  332     25555 44444335788999


Q ss_pred             HHHHHHHHHHHhcCC-CchHHHHHHHHH-HHHHhhccCchhHHHHHHHHHHHHHHhhcccCcCcHHhHHHHHHHhccC--
Q 046417          155 VGGAMCLAAAIDAAP-NPEVEQLRKLLP-RLGKAVRIEGFKAKAAVLGVIGSVVRVGGARSKGVLDWLVPCLVEFLCC--  230 (595)
Q Consensus       155 ~~AA~cLaaviE~a~-d~~~~~L~~Ll~-rL~klL~~~~~kaK~alLsAIgSlA~a~g~~~~~yl~~lmp~L~e~L~~--  230 (595)
                      ..||.||..+.|.++ +.+.|||+.||. +|..++.+....+|.+++.+|||+|.+++..|.+|++.+||+|..+|..  
T Consensus       450 ahAa~al~nf~E~~~~~~l~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~~F~pY~d~~Mp~L~~~L~n~~  529 (1075)
T KOG2171|consen  450 AHAAAALVNFSEECDKSILEPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQEKFIPYFDRLMPLLKNFLQNAD  529 (1075)
T ss_pred             HHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHhCCC
Confidence            999999999999864 555799999999 5555556668889999999999999999999999999999999999963  


Q ss_pred             --CCHHHHHHHHHHHHHHHHHhH-HhHHHHHHHHHHHHHhccCCch---HHHHHHHHHHHHHhHhcCCC
Q 046417          231 --DDWATRKAAAEVLGKVAVFDK-DLATEYKRSCLAALETRRFDKV---KIVRETMNRSLEMWKEVPGV  293 (595)
Q Consensus       231 --dDW~~RkaAaEaLgsIA~avg-e~f~py~~~~I~~Le~crfDKV---K~VRda~~~aL~~~K~i~~~  293 (595)
                        +.-.+|.-.+||++.||.++| +.|.|++.++|..+-....+-+   .+.|+-+..+.-.+-.|.|.
T Consensus       530 ~~d~r~LrgktmEcisli~~AVGke~F~~~a~eliqll~~~~~~~~~~dd~~~sy~~~~warmc~ilg~  598 (1075)
T KOG2171|consen  530 DKDLRELRGKTMECLSLIARAVGKEKFLPLAEELIQLLLELQGSDQDDDDPLRSYMIAFWARMCRILGD  598 (1075)
T ss_pred             chhhHHHHhhHHHHHHHHHHHhhhhhhhHhHHHHHHHHHhhcccchhhccccHHHHHHHHHHHHHHhch
Confidence              457889999999999999999 8999999999999655433322   56777777666666666655

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.74  E-value=8.2e-18  Score=185.16  Aligned_cols=242  Identities=24%  Similarity=0.257  Sum_probs=191.7

Q ss_pred             HHHHHHHHHHHHHhCCcCc---HHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccchhhHHHHHHHHHhhccCCCh
Q 046417           36 LPVATAELESIARTLTQDS---FSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPHLSKMISTVSCRLRDPDS  112 (595)
Q Consensus        36 ~r~A~~~LD~lA~~L~~~~---lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~PhLpkIL~~IvrrLkD~ds  112 (595)
                      +.-|+..+..+.-.-++..   |..||..|.....+.++.+||..+++|..+-|.++|.+.|||+.||.|++.+.+|+|.
T Consensus       191 Rs~A~~cvNq~i~~~~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl~phl~~IveyML~~tqd~dE  270 (885)
T KOG2023|consen  191 RSHAVGCVNQFIIIQTQALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDKLVPHLDNIVEYMLQRTQDVDE  270 (885)
T ss_pred             HHHHHhhhhheeecCcHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhcccchHHHHHHHHHHccCcch
Confidence            4446666666554444322   7889999988888888999999999999999999999999999999999999999999


Q ss_pred             hH-HHHHHHHHHHhhhh-hcCCcchhccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhh---
Q 046417          113 SV-RSACVAATTAMSLN-ITKPSFSVLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNPEVEQLRKLLPRLGKAV---  187 (595)
Q Consensus       113 ~V-R~Ac~~aLg~LA~~-l~~~~~~~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d~~~~~L~~Ll~rL~klL---  187 (595)
                      .| -+||-++++ +|+. +++..+..|++-|+..|+ ..+++....-.+ |...-|  ++.+...-++|-||++|--   
T Consensus       271 ~VALEACEFwla-~aeqpi~~~~L~p~l~kliPvLl-~~M~Ysd~D~~L-L~~~ee--D~~vpDreeDIkPRfhksk~~~  345 (885)
T KOG2023|consen  271 NVALEACEFWLA-LAEQPICKEVLQPYLDKLIPVLL-SGMVYSDDDIIL-LKNNEE--DESVPDREEDIKPRFHKSKEHG  345 (885)
T ss_pred             hHHHHHHHHHHH-HhcCcCcHHHHHHHHHHHHHHHH-ccCccccccHHH-hcCccc--cccCCchhhhccchhhhchhcc
Confidence            98 788888854 5543 333222348888888886 455554444443 331111  1222235667889998854   


Q ss_pred             ----------------------ccCchhHHHHHHHHHHHHHHhhcccCcCcHHhHHHHHHHhccCCCHHHHHHHHHHHHH
Q 046417          188 ----------------------RIEGFKAKAAVLGVIGSVVRVGGARSKGVLDWLVPCLVEFLCCDDWATRKAAAEVLGK  245 (595)
Q Consensus       188 ----------------------~~~~~kaK~alLsAIgSlA~a~g~~~~~yl~~lmp~L~e~L~~dDW~~RkaAaEaLgs  245 (595)
                                            +|+-++|.+|+|+.++++.      ....++.++|.|++.|.+++|.+|.+++.+||+
T Consensus       346 ~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLanvf------~~elL~~l~PlLk~~L~~~~W~vrEagvLAlGA  419 (885)
T KOG2023|consen  346 NGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLANVF------GDELLPILLPLLKEHLSSEEWKVREAGVLALGA  419 (885)
T ss_pred             CccccccccccccccccccccccccHhhccHHHHHHHHHhh------HHHHHHHHHHHHHHHcCcchhhhhhhhHHHHHH
Confidence                                  2677889999999999888      457789999999999999999999999999999


Q ss_pred             HHHHhHHhHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHhH
Q 046417          246 VAVFDKDLATEYKRSCLAALETRRFDKVKIVRETMNRSLEMWK  288 (595)
Q Consensus       246 IA~avge~f~py~~~~I~~Le~crfDKVK~VRda~~~aL~~~K  288 (595)
                      ||..++++|.||.+..+++|-+|-+||.++||..+.=.|..+-
T Consensus       420 IAEGcM~g~~p~LpeLip~l~~~L~DKkplVRsITCWTLsRys  462 (885)
T KOG2023|consen  420 IAEGCMQGFVPHLPELIPFLLSLLDDKKPLVRSITCWTLSRYS  462 (885)
T ss_pred             HHHHHhhhcccchHHHHHHHHHHhccCccceeeeeeeeHhhhh
Confidence            9999999999999999999999999999999998877665543

>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.44  E-value=9e-12  Score=139.89  Aligned_cols=253  Identities=13%  Similarity=0.131  Sum_probs=198.6

Q ss_pred             hHHHHHHHHHhhhcCC---CC---hHHHHHHHHHHHHHhCCcCcHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHcc-
Q 046417           17 NDLKQRVITCLNKLAD---RD---TLPVATAELESIARTLTQDSFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHG-   89 (595)
Q Consensus        17 ~~lk~rvl~~L~KL~D---rD---T~r~A~~~LD~lA~~L~~~~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~g-   89 (595)
                      +.+---++..|+|=++   +|   +++.|-..|..+|+.-..+.+++.++.|.+.+++++|..|++++.+||-+-+|-. 
T Consensus       318 ~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D~Iv~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~  397 (859)
T KOG1241|consen  318 QDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVGDDIVPHVLPFIEENIQNPDWRNREAAVMAFGSILEGPEP  397 (859)
T ss_pred             hHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhcccchhhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCch
Confidence            4566667888888542   22   8999999999999999888899999999999999999999999999999999875 


Q ss_pred             ccchhhHHHHHHHHHhhccCCChhHHHHHHHHHHHhhhhhcCC---------------------c---------------
Q 046417           90 DSLSPHLSKMISTVSCRLRDPDSSVRSACVAATTAMSLNITKP---------------------S---------------  133 (595)
Q Consensus        90 d~I~PhLpkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~~~---------------------~---------------  133 (595)
                      +.+.|..+..+|.|++...||.-.||+.+.|++|++++++...                     |               
T Consensus       398 ~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~DePrva~N~CWAf~~Lae  477 (859)
T KOG1241|consen  398 DKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLNDEPRVASNVCWAFISLAE  477 (859)
T ss_pred             hhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhhhCchHHHHHHHHHHHHHH
Confidence            8889999999999999999999999999999999999887531                     0               


Q ss_pred             -------------ch-hccHHHHHHHhh-----c-CChhHHHHHHHHHHHHHhcCCCchHH-------------------
Q 046417          134 -------------FS-VLSKPLIELILV-----E-QDVNSQVGGAMCLAAAIDAAPNPEVE-------------------  174 (595)
Q Consensus       134 -------------~~-~~l~PLi~aLl~-----d-~nk~VQ~~AA~cLaaviE~a~d~~~~-------------------  174 (595)
                                   .. .|+.+++..|+.     + +.-+.-.+|..||-.+|.+.++..-+                   
T Consensus       478 a~~eA~~s~~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~vy~~v~~~~l~il~kl~q~i~~  557 (859)
T KOG1241|consen  478 AAYEAAVSNGQTDPATPFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTDDVYPMVQKLTLVILEKLDQTISS  557 (859)
T ss_pred             HHHHhccCCCCCCccchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                         00 155666666653     1 23345566666777777665443221                   


Q ss_pred             -----------------------------------HHHHHHHHHHHhhccC-chhHHHHHHHHHHHHHHhhcccCcCcHH
Q 046417          175 -----------------------------------QLRKLLPRLGKAVRIE-GFKAKAAVLGVIGSVVRVGGARSKGVLD  218 (595)
Q Consensus       175 -----------------------------------~L~~Ll~rL~klL~~~-~~kaK~alLsAIgSlA~a~g~~~~~yl~  218 (595)
                                                         +-+.||.-|+++|+++ +--+..-++-+|++++...|..|..|++
T Consensus       558 ~~l~~~dr~q~~eLQs~Lc~~Lq~i~rk~~~~~~~~~d~iM~lflri~~s~~s~~v~e~a~laV~tl~~~Lg~~F~kym~  637 (859)
T KOG1241|consen  558 QILSLADRAQLNELQSLLCNTLQSIIRKVGSDIREVSDQIMGLFLRIFESKRSAVVHEEAFLAVSTLAESLGKGFAKYMP  637 (859)
T ss_pred             HhccHhhHHHHHHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhHhHHHHHH
Confidence                                               2224555555666552 3335566677889999888888999999


Q ss_pred             hHHHHHHHhcc-CCCHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHhcc
Q 046417          219 WLVPCLVEFLC-CDDWATRKAAAEVLGKVAVFDKDLATEYKRSCLAALETRR  269 (595)
Q Consensus       219 ~lmp~L~e~L~-~dDW~~RkaAaEaLgsIA~avge~f~py~~~~I~~Le~cr  269 (595)
                      .+.|.|..-|. -.|.++-.+|.-..|-|+.++++.|.||...+|..|-.|-
T Consensus       638 ~f~pyL~~gL~n~~e~qVc~~aVglVgdl~raL~~~i~py~d~~mt~Lvq~L  689 (859)
T KOG1241|consen  638 AFKPYLLMGLSNFQEYQVCAAAVGLVGDLARALEDDILPYCDELMTVLVQCL  689 (859)
T ss_pred             HHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHc
Confidence            99999999994 5789999999999999999999999999988888876663

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.44  E-value=2.5e-11  Score=141.48  Aligned_cols=273  Identities=19%  Similarity=0.225  Sum_probs=199.1

Q ss_pred             CCChhHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHhCCcCcHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccc
Q 046417           13 PPSTNDLKQRVITCLNKLADRDTLPVATAELESIARTLTQDSFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSL   92 (595)
Q Consensus        13 ~~~~~~lk~rvl~~L~KL~DrDT~r~A~~~LD~lA~~L~~~~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I   92 (595)
                      .+.-+.+|..+|.++-+-.-.--++--...+-.+|+++=++.-|-+|+.|.+...++++..|+.+++.|..+.+..|...
T Consensus        74 ~e~~~siks~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e~WPell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~  153 (1075)
T KOG2171|consen   74 AEVQQSIKSSLLEIIQSETEPSVRHKLADVIAEIARNDLPEKWPELLQFLFQSTKSPNPSLRESALLILSSLPETFGNTL  153 (1075)
T ss_pred             HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccchHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhcccc
Confidence            34457888888888888433223344445556678876666888899999998899999999999999999999999999


Q ss_pred             hhhHHHHHHHHHhhccCCChhHHHHHHHHHHHhhhhhc-CCcch----hccHHHHHHHhh---cCChhHHHHHHHHHHHH
Q 046417           93 SPHLSKMISTVSCRLRDPDSSVRSACVAATTAMSLNIT-KPSFS----VLSKPLIELILV---EQDVNSQVGGAMCLAAA  164 (595)
Q Consensus        93 ~PhLpkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~-~~~~~----~~l~PLi~aLl~---d~nk~VQ~~AA~cLaav  164 (595)
                      .||+..+++.+.+.+.|+...||-+++.|++.++.++. +....    .+++-++..|-.   ++|.   ..|+.||..+
T Consensus       154 ~~~~~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~---~~a~~~l~~l  230 (1075)
T KOG2171|consen  154 QPHLDDLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDD---DAAKSALEAL  230 (1075)
T ss_pred             chhHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccch---HHHHHHHHHH
Confidence            99999999999999999998899999999999999984 22222    234335555521   2222   2355555555


Q ss_pred             Hhc---CCCchHHHHHHHHHHHHHhhccCch--hHHHHHHHHHHHHHHhh------------------------------
Q 046417          165 IDA---APNPEVEQLRKLLPRLGKAVRIEGF--KAKAAVLGVIGSVVRVG------------------------------  209 (595)
Q Consensus       165 iE~---a~d~~~~~L~~Ll~rL~klL~~~~~--kaK~alLsAIgSlA~a~------------------------------  209 (595)
                      +|-   .+..+.+++..++.-.++..++...  .+|-.+|..|-+++..+                              
T Consensus       231 ~El~e~~pk~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~e  310 (1075)
T KOG2171|consen  231 IELLESEPKLLRPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDE  310 (1075)
T ss_pred             HHHHhhchHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchh
Confidence            554   4444456666665555555544422  24555555555554431                              


Q ss_pred             ----------------------------cccCcCcHHhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhHHhHHHHHHHH
Q 046417          210 ----------------------------GARSKGVLDWLVPCLVEFLCCDDWATRKAAAEVLGKVAVFDKDLATEYKRSC  261 (595)
Q Consensus       210 ----------------------------g~~~~~yl~~lmp~L~e~L~~dDW~~RkaAaEaLgsIA~avge~f~py~~~~  261 (595)
                                                  +..+...++.+++.+..++.+.+|.-|+||+-+|+.++..+++.+....+.+
T Consensus       311 w~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~~I  390 (1075)
T KOG2171|consen  311 WSNEDDLDEDDEETPYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLPKI  390 (1075)
T ss_pred             hccccccccccccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence                                        1112344566677777888899999999999999999999999888888888


Q ss_pred             HHHHHhccCCchHHHHHHHHHHHHHhH
Q 046417          262 LAALETRRFDKVKIVRETMNRSLEMWK  288 (595)
Q Consensus       262 I~~Le~crfDKVK~VRda~~~aL~~~K  288 (595)
                      +.+.-+.--|-=+.||-++..||..+-
T Consensus       391 l~~Vl~~l~DphprVr~AA~naigQ~s  417 (1075)
T KOG2171|consen  391 LPIVLNGLNDPHPRVRYAALNAIGQMS  417 (1075)
T ss_pred             HHHHHhhcCCCCHHHHHHHHHHHHhhh
Confidence            888777777999999999988887654

>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]

Probab=99.22  E-value=1e-09  Score=120.45  Aligned_cols=252  Identities=15%  Similarity=0.143  Sum_probs=195.2

Q ss_pred             HHHHHHHHHhhhcC----CCC--hHHHHHHHHHHHHHhCCcCcHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHcc-c
Q 046417           18 DLKQRVITCLNKLA----DRD--TLPVATAELESIARTLTQDSFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHG-D   90 (595)
Q Consensus        18 ~lk~rvl~~L~KL~----DrD--T~r~A~~~LD~lA~~L~~~~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~g-d   90 (595)
                      +.--.+|..|.|-+    |+|  +...|...|..+|+.-....+.+.+..+.+.+.+++|..|++++++||-+-+|-. +
T Consensus       321 dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~gd~i~~pVl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~  400 (858)
T COG5215         321 DVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLKGDKIMRPVLGFVEQNIRSESWANREAAVMAFGSVMHGPCED  400 (858)
T ss_pred             HHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHHhhhHhHHHHHHHHHHhccCchhhhHHHHHHHhhhhhcCccHH
Confidence            44455666777743    222  8888999999999988777799999999999999999999999999999998865 6


Q ss_pred             cchhhHHHHHHHHHhhccCCChhHHHHHHHHHHHhhhhhcC---C------------------c----------------
Q 046417           91 SLSPHLSKMISTVSCRLRDPDSSVRSACVAATTAMSLNITK---P------------------S----------------  133 (595)
Q Consensus        91 ~I~PhLpkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~~---~------------------~----------------  133 (595)
                      -+.++.|+.+|.|.....|+---|.+-++|++|++|.++..   +                  |                
T Consensus       401 ~lT~~V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~va~~i~p~~Hl~~~vsa~liGl~D~p~~~~ncsw~~~nlv~h  480 (858)
T COG5215         401 CLTKIVPQALPGIENEMSDSCLWVKSTTAWCFGAIADHVAMIISPCGHLVLEVSASLIGLMDCPFRSINCSWRKENLVDH  480 (858)
T ss_pred             HHHhhHHhhhHHHHHhcccceeehhhHHHHHHHHHHHHHHHhcCccccccHHHHHHHhhhhccchHHhhhHHHHHhHHHh
Confidence            66889999999999999988888999999999999988753   0                  0                


Q ss_pred             ------ch-h----ccHHHHHHHhh-----cCChhHHHHHHHHHHHHHhcCCCchHHHHH--------------------
Q 046417          134 ------FS-V----LSKPLIELILV-----EQDVNSQVGGAMCLAAAIDAAPNPEVEQLR--------------------  177 (595)
Q Consensus       134 ------~~-~----~l~PLi~aLl~-----d~nk~VQ~~AA~cLaaviE~a~d~~~~~L~--------------------  177 (595)
                            +. +    |..-++.+|++     .++-+...++..+|..+|+-+++.+.+++-                    
T Consensus       481 ~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~~~~d~V~~~~a~~~~~~~~kl~~~isv~~q~  560 (858)
T COG5215         481 IAKAVREVESFLAKFYLAILNALVKGTELALNESNLRVSLFSALGTLILICPDAVSDILAGFYDYTSKKLDECISVLGQI  560 (858)
T ss_pred             hhhhhccccchhHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence                  00 1    34445555543     455667788888889888877665433221                    


Q ss_pred             ------------------------------------HHHHHHHHhhccC-chhHHHHHHHHHHHHHHhhcccCcCcHHhH
Q 046417          178 ------------------------------------KLLPRLGKAVRIE-GFKAKAAVLGVIGSVVRVGGARSKGVLDWL  220 (595)
Q Consensus       178 ------------------------------------~Ll~rL~klL~~~-~~kaK~alLsAIgSlA~a~g~~~~~yl~~l  220 (595)
                                                          .||.-|++.|++. ..-+-.-++-+|+.++..-++.|..|++.+
T Consensus       561 l~~eD~~~~~elqSN~~~vl~aiir~~~~~ie~v~D~lm~Lf~r~les~~~t~~~~dV~~aIsal~~sl~e~Fe~y~~~f  640 (858)
T COG5215         561 LATEDQLLVEELQSNYIGVLEAIIRTRRRDIEDVEDQLMELFIRILESTKPTTAFGDVYTAISALSTSLEERFEQYASKF  640 (858)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHHHHHHHHHhhh
Confidence                                                2444444455443 223445567788888888788899999999


Q ss_pred             HHHHHHhccCCCHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHhcc
Q 046417          221 VPCLVEFLCCDDWATRKAAAEVLGKVAVFDKDLATEYKRSCLAALETRR  269 (595)
Q Consensus       221 mp~L~e~L~~dDW~~RkaAaEaLgsIA~avge~f~py~~~~I~~Le~cr  269 (595)
                      +|.|...|...|..+-..|.-.+|.||..+|.-|.+|....+..|-.|-
T Consensus       641 iPyl~~aln~~d~~v~~~avglvgdlantl~~df~~y~d~~ms~LvQ~l  689 (858)
T COG5215         641 IPYLTRALNCTDRFVLNSAVGLVGDLANTLGTDFNIYADVLMSSLVQCL  689 (858)
T ss_pred             hHHHHHHhcchhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999988777776664

>PRK09687 putative lyase; Provisional

Probab=99.13  E-value=1.4e-09  Score=112.88  Aligned_cols=199  Identities=15%  Similarity=0.059  Sum_probs=128.5

Q ss_pred             hHHHHHHHHHhhhc-CCCCh--HHHHHHHHHHHHHhCCcCcHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccch
Q 046417           17 NDLKQRVITCLNKL-ADRDT--LPVATAELESIARTLTQDSFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLS   93 (595)
Q Consensus        17 ~~lk~rvl~~L~KL-~DrDT--~r~A~~~LD~lA~~L~~~~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~   93 (595)
                      +..+..-+..|.++ .|.|+  +..|+..|..+.   +++.++.+...+.    ++++.+|++++.+||.+..  .+.. 
T Consensus        18 ~~~~~~~~~~L~~~L~d~d~~vR~~A~~aL~~~~---~~~~~~~l~~ll~----~~d~~vR~~A~~aLg~lg~--~~~~-   87 (280)
T PRK09687         18 SQCKKLNDDELFRLLDDHNSLKRISSIRVLQLRG---GQDVFRLAIELCS----SKNPIERDIGADILSQLGM--AKRC-   87 (280)
T ss_pred             HHHhhccHHHHHHHHhCCCHHHHHHHHHHHHhcC---cchHHHHHHHHHh----CCCHHHHHHHHHHHHhcCC--Cccc-
Confidence            34444444444444 56563  444555554332   2333555555433    3568899999999888743  1111 


Q ss_pred             hhHHHHHHHHHhh-ccCCChhHHHHHHHHHHHhhhhhcCCcchhccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCCCch
Q 046417           94 PHLSKMISTVSCR-LRDPDSSVRSACVAATTAMSLNITKPSFSVLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNPE  172 (595)
Q Consensus        94 PhLpkIL~~Ivrr-LkD~ds~VR~Ac~~aLg~LA~~l~~~~~~~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d~~  172 (595)
                        ..+.++.+... ++|+++.||.+++.+||.+...... +...++..|..++ .+.+..|+.+|+.+|..+-    +  
T Consensus        88 --~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~-~~~~a~~~l~~~~-~D~~~~VR~~a~~aLg~~~----~--  157 (280)
T PRK09687         88 --QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPL-YSPKIVEQSQITA-FDKSTNVRFAVAFALSVIN----D--  157 (280)
T ss_pred             --hHHHHHHHHHHHhcCCCHHHHHHHHHHHhcccccccc-cchHHHHHHHHHh-hCCCHHHHHHHHHHHhccC----C--
Confidence              45777877766 7889999999999888887643321 1112445555555 5678888888888885332    1  


Q ss_pred             HHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHhhcccCcCcHHhHHHHHHHhccCCCHHHHHHHHHHHHHHH
Q 046417          173 VEQLRKLLPRLGKAVRIEGFKAKAAVLGVIGSVVRVGGARSKGVLDWLVPCLVEFLCCDDWATRKAAAEVLGKVA  247 (595)
Q Consensus       173 ~~~L~~Ll~rL~klL~~~~~kaK~alLsAIgSlA~a~g~~~~~yl~~lmp~L~e~L~~dDW~~RkaAaEaLgsIA  247 (595)
                          +..++-|..+|++++..++..++-++|.+-    ..    -+.+++.|...|.|.+|.+|+.|+.+||.+.
T Consensus       158 ----~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~----~~----~~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~  220 (280)
T PRK09687        158 ----EAAIPLLINLLKDPNGDVRNWAAFALNSNK----YD----NPDIREAFVAMLQDKNEEIRIEAIIGLALRK  220 (280)
T ss_pred             ----HHHHHHHHHHhcCCCHHHHHHHHHHHhcCC----CC----CHHHHHHHHHHhcCCChHHHHHHHHHHHccC
Confidence                245677777888888888888877777651    11    2467788888888889999999999988864

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=99.03  E-value=1e-08  Score=121.66  Aligned_cols=214  Identities=20%  Similarity=0.159  Sum_probs=126.2

Q ss_pred             cCCCC--hHHHHHHHHHHHHHhCCcCcHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccchhhHHHHHHHHHhhc
Q 046417           30 LADRD--TLPVATAELESIARTLTQDSFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPHLSKMISTVSCRL  107 (595)
Q Consensus        30 L~DrD--T~r~A~~~LD~lA~~L~~~~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~PhLpkIL~~IvrrL  107 (595)
                      |.|.|  .++.|+..|-.+.   +++.++.++..|.    ++++.+|.+++.+|+.+++....         .+.+...|
T Consensus       630 L~D~d~~VR~~Av~~L~~~~---~~~~~~~L~~aL~----D~d~~VR~~Aa~aL~~l~~~~~~---------~~~L~~~L  693 (897)
T PRK13800        630 LADPDPGVRRTAVAVLTETT---PPGFGPALVAALG----DGAAAVRRAAAEGLRELVEVLPP---------APALRDHL  693 (897)
T ss_pred             hcCCCHHHHHHHHHHHhhhc---chhHHHHHHHHHc----CCCHHHHHHHHHHHHHHHhccCc---------hHHHHHHh
Confidence            44555  6777777765543   4555666665553    35688999998888887654321         12334445


Q ss_pred             cCCChhHHHHHHHHHHHhhhhh--------cCC-cch-----------hccHHHHHHHhhcCChhHHHHHHHHHHHHHhc
Q 046417          108 RDPDSSVRSACVAATTAMSLNI--------TKP-SFS-----------VLSKPLIELILVEQDVNSQVGGAMCLAAAIDA  167 (595)
Q Consensus       108 kD~ds~VR~Ac~~aLg~LA~~l--------~~~-~~~-----------~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~  167 (595)
                      .|+++.||.+++.+|+.+...-        .++ +..           .-...|..+| .|.+..|+..++.+|..+...
T Consensus       694 ~~~d~~VR~~A~~aL~~~~~~~~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~l~~~l-~D~~~~VR~~aa~aL~~~~~~  772 (897)
T PRK13800        694 GSPDPVVRAAALDVLRALRAGDAALFAAALGDPDHRVRIEAVRALVSVDDVESVAGAA-TDENREVRIAVAKGLATLGAG  772 (897)
T ss_pred             cCCCHHHHHHHHHHHHhhccCCHHHHHHHhcCCCHHHHHHHHHHHhcccCcHHHHHHh-cCCCHHHHHHHHHHHHHhccc
Confidence            5555566666665555543100        000 000           0011222333 455555555555555544332


Q ss_pred             CCCchHHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHhhcccCcCcHHhHHHHHHHhccCCCHHHHHHHHHHHHHHH
Q 046417          168 APNPEVEQLRKLLPRLGKAVRIEGFKAKAAVLGVIGSVVRVGGARSKGVLDWLVPCLVEFLCCDDWATRKAAAEVLGKVA  247 (595)
Q Consensus       168 a~d~~~~~L~~Ll~rL~klL~~~~~kaK~alLsAIgSlA~a~g~~~~~yl~~lmp~L~e~L~~dDW~~RkaAaEaLgsIA  247 (595)
                      ..        ...+.|.++++++...+|.+++.+++.+   +..      +.+.+.|...|.+++|.+|.+|+++|+.+.
T Consensus       773 ~~--------~~~~~L~~ll~D~d~~VR~aA~~aLg~~---g~~------~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~  835 (897)
T PRK13800        773 GA--------PAGDAVRALTGDPDPLVRAAALAALAEL---GCP------PDDVAAATAALRASAWQVRQGAARALAGAA  835 (897)
T ss_pred             cc--------hhHHHHHHHhcCCCHHHHHHHHHHHHhc---CCc------chhHHHHHHHhcCCChHHHHHHHHHHHhcc
Confidence            11        1145667888888888888887777643   111      233466888899999999999999998764


Q ss_pred             HHhHHhHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHh
Q 046417          248 VFDKDLATEYKRSCLAALETRRFDKVKIVRETMNRSLEMW  287 (595)
Q Consensus       248 ~avge~f~py~~~~I~~Le~crfDKVK~VRda~~~aL~~~  287 (595)
                      ..  +.    .+.++..|.    |+...||..+.++|..|
T Consensus       836 ~~--~a----~~~L~~~L~----D~~~~VR~~A~~aL~~~  865 (897)
T PRK13800        836 AD--VA----VPALVEALT----DPHLDVRKAAVLALTRW  865 (897)
T ss_pred             cc--ch----HHHHHHHhc----CCCHHHHHHHHHHHhcc
Confidence            21  11    133444555    99999999999999887

>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]

Probab=99.02  E-value=1.2e-08  Score=113.52  Aligned_cols=242  Identities=17%  Similarity=0.154  Sum_probs=185.5

Q ss_pred             HHHHHHHHHhhhcCCCC--hHHHHHHHHHHHHHhCCcCcHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccchhh
Q 046417           18 DLKQRVITCLNKLADRD--TLPVATAELESIARTLTQDSFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPH   95 (595)
Q Consensus        18 ~lk~rvl~~L~KL~DrD--T~r~A~~~LD~lA~~L~~~~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~Ph   95 (595)
                      .+..-+-.+|++.+|.+  -++.|....+.+...+++..+.-||+-+.......+|+.+.+++-++|.+++..++.+.-.
T Consensus       213 yiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aVK~llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs~~  292 (569)
T KOG1242|consen  213 YIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAVKLLLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLSLC  292 (569)
T ss_pred             hHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchhhHhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHHHH
Confidence            56677788899998887  6778889999999999987777666666555555599999999999999999999999999


Q ss_pred             HHHHHHHHHhhccCCChhHHHHHHHHHHHhhhhhcCCcch-hccHHHHHHHhhcCChhHHHHHHHHHHHHHhc--CCCch
Q 046417           96 LSKMISTVSCRLRDPDSSVRSACVAATTAMSLNITKPSFS-VLSKPLIELILVEQDVNSQVGGAMCLAAAIDA--APNPE  172 (595)
Q Consensus        96 LpkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~~~~~~-~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~--a~d~~  172 (595)
                      +|.|+|.+...|.|..+.||.|+-.+|-++++.+-. +.+ .+++-|+++| ++...++..    |+..+...  .....
T Consensus       293 lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN-~dI~~~ip~Lld~l-~dp~~~~~e----~~~~L~~ttFV~~V~  366 (569)
T KOG1242|consen  293 LPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDN-PDIQKIIPTLLDAL-ADPSCYTPE----CLDSLGATTFVAEVD  366 (569)
T ss_pred             HhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhcc-HHHHHHHHHHHHHh-cCcccchHH----HHHhhcceeeeeeec
Confidence            999999999999999999999999999999987743 334 4888899999 666644442    23433332  23333


Q ss_pred             HHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHhh--cccCcCcHHhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHh
Q 046417          173 VEQLRKLLPRLGKAVRIEGFKAKAAVLGVIGSVVRVG--GARSKGVLDWLVPCLVEFLCCDDWATRKAAAEVLGKVAVFD  250 (595)
Q Consensus       173 ~~~L~~Ll~rL~klL~~~~~kaK~alLsAIgSlA~a~--g~~~~~yl~~lmp~L~e~L~~dDW~~RkaAaEaLgsIA~av  250 (595)
                      .+-|.-|+|-|.+-|+..++..|-..+-.++-++.--  ...-.+|++.++|-|...+-+.+=.+|..|+-+|+.+-..+
T Consensus       367 ~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl~~Llp~lk~~~~d~~PEvR~vaarAL~~l~e~~  446 (569)
T KOG1242|consen  367 APSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLPSLLPGLKENLDDAVPEVRAVAARALGALLERL  446 (569)
T ss_pred             chhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhHHHHhhHHHHHhcCCChhHHHHHHHHHHHHHHHH
Confidence            4677788888888887776666655555566555422  22346999999999999998888899999999999999998


Q ss_pred             HH-hHHHHHHHHHHHH
Q 046417          251 KD-LATEYKRSCLAAL  265 (595)
Q Consensus       251 ge-~f~py~~~~I~~L  265 (595)
                      |+ .|..-.+.....+
T Consensus       447 g~~~f~d~~p~l~e~~  462 (569)
T KOG1242|consen  447 GEVSFDDLIPELSETL  462 (569)
T ss_pred             HhhcccccccHHHHhh
Confidence            84 5533334433333

>PRK09687 putative lyase; Provisional

Probab=99.00  E-value=2.5e-08  Score=103.66  Aligned_cols=169  Identities=12%  Similarity=0.047  Sum_probs=83.3

Q ss_pred             HhCCcCcHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccchhhHHHHHHHHHhhccCCChhHHHHHHHHHHHhhh
Q 046417           48 RTLTQDSFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPHLSKMISTVSCRLRDPDSSVRSACVAATTAMSL  127 (595)
Q Consensus        48 ~~L~~~~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~PhLpkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~  127 (595)
                      ..+..-.+..++..|.+    .+..+|..++.+|+.+..          +.+++.+.+.++|+++.||.+++++||+|..
T Consensus        18 ~~~~~~~~~~L~~~L~d----~d~~vR~~A~~aL~~~~~----------~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~   83 (280)
T PRK09687         18 SQCKKLNDDELFRLLDD----HNSLKRISSIRVLQLRGG----------QDVFRLAIELCSSKNPIERDIGADILSQLGM   83 (280)
T ss_pred             HHHhhccHHHHHHHHhC----CCHHHHHHHHHHHHhcCc----------chHHHHHHHHHhCCCHHHHHHHHHHHHhcCC
Confidence            33333335555555533    345566666666554432          2444455555566666666666666666653


Q ss_pred             hhcCCcchhccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHH
Q 046417          128 NITKPSFSVLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNPEVEQLRKLLPRLGKAVRIEGFKAKAAVLGVIGSVVR  207 (595)
Q Consensus       128 ~l~~~~~~~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d~~~~~L~~Ll~rL~klL~~~~~kaK~alLsAIgSlA~  207 (595)
                      .-.  .....+..|...++.|.+..|...|+.+|..+......    ....+...+..++.+++..+|.+++.++|.+- 
T Consensus        84 ~~~--~~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~----~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~-  156 (280)
T PRK09687         84 AKR--CQDNVFNILNNLALEDKSACVRASAINATGHRCKKNPL----YSPKIVEQSQITAFDKSTNVRFAVAFALSVIN-  156 (280)
T ss_pred             Ccc--chHHHHHHHHHHHhcCCCHHHHHHHHHHHhcccccccc----cchHHHHHHHHHhhCCCHHHHHHHHHHHhccC-
Confidence            210  00012333444434555666666666666555432211    12334444445555555555555444443210 


Q ss_pred             hhcccCcCcHHhHHHHHHHhccCCCHHHHHHHHHHHHHH
Q 046417          208 VGGARSKGVLDWLVPCLVEFLCCDDWATRKAAAEVLGKV  246 (595)
Q Consensus       208 a~g~~~~~yl~~lmp~L~e~L~~dDW~~RkaAaEaLgsI  246 (595)
                               -+..++.|...|.+++|.+|..|+.+||.+
T Consensus       157 ---------~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~  186 (280)
T PRK09687        157 ---------DEAAIPLLINLLKDPNGDVRNWAAFALNSN  186 (280)
T ss_pred             ---------CHHHHHHHHHHhcCCCHHHHHHHHHHHhcC
Confidence                     133455666666666666666666666655

>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]

Probab=98.94  E-value=2e-07  Score=103.89  Aligned_cols=271  Identities=18%  Similarity=0.179  Sum_probs=198.5

Q ss_pred             HHHHHHhhhcCCCChHHHHHHHHHHHHHhCCcCc--HHHHHHhhhhcCCCCCh-HHHHHHHHHHHHHHHHccccchhhHH
Q 046417           21 QRVITCLNKLADRDTLPVATAELESIARTLTQDS--FSSFLNCLQTTDSSSKS-PVRKQCVNLLTLLSRSHGDSLSPHLS   97 (595)
Q Consensus        21 ~rvl~~L~KL~DrDT~r~A~~~LD~lA~~L~~~~--lp~fL~~L~d~~ss~kp-~vRKaaI~lLG~lAEg~gd~I~PhLp   97 (595)
                      ..+.++|+ ..+-..++-|+.++-.+.+.+.-+.  =..|+.-|.....+-++ ..|+.+..++.......|...-||+.
T Consensus       137 ~~l~~ll~-~~~~~~~~~aa~~~ag~v~g~~i~~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~EPyiv  215 (569)
T KOG1242|consen  137 ELLLELLT-STKIAERAGAAYGLAGLVNGLGIESLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLGPPFEPYIV  215 (569)
T ss_pred             HHHHHHhc-cccHHHHhhhhHHHHHHHcCcHHhhhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCCCCCchHH
Confidence            33344444 3344455566667777777665333  23566666666655555 44556888888888888988999999


Q ss_pred             HHHHHHHhhccCCChhHHHHHHHHHHHhhhhhcCCcchhccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCCCchHHHHH
Q 046417           98 KMISTVSCRLRDPDSSVRSACVAATTAMSLNITKPSFSVLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNPEVEQLR  177 (595)
Q Consensus        98 kIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~~~~~~~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d~~~~~L~  177 (595)
                      .++|.|+..+-|....||+|+.+++-++-..+.....-.++++++..|... .=.--.++.--|..+.+.++..+.-+++
T Consensus       216 ~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aVK~llpsll~~l~~~-kWrtK~aslellg~m~~~ap~qLs~~lp  294 (569)
T KOG1242|consen  216 PILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAVKLLLPSLLGSLLEA-KWRTKMASLELLGAMADCAPKQLSLCLP  294 (569)
T ss_pred             hhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchhhHhhhhhHHHHHHH-hhhhHHHHHHHHHHHHHhchHHHHHHHh
Confidence            999999999999999999999999999888774322113899999999654 1112234444466777778887878999


Q ss_pred             HHHHHHHHhhccCchhHHHHHHHHHHHHHHhhcc-------------------------------cC-----cCcHHhHH
Q 046417          178 KLLPRLGKAVRIEGFKAKAAVLGVIGSVVRVGGA-------------------------------RS-----KGVLDWLV  221 (595)
Q Consensus       178 ~Ll~rL~klL~~~~~kaK~alLsAIgSlA~a~g~-------------------------------~~-----~~yl~~lm  221 (595)
                      .|+|.+.+.|.+.+.++|.+.+.++-.+-.+...                               .|     .|-+..++
T Consensus       295 ~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~dI~~~ip~Lld~l~dp~~~~~e~~~~L~~ttFV~~V~~psLalmv  374 (569)
T KOG1242|consen  295 DLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPDIQKIIPTLLDALADPSCYTPECLDSLGATTFVAEVDAPSLALMV  374 (569)
T ss_pred             HhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhcCcccchHHHHHhhcceeeeeeecchhHHHHH
Confidence            9999999999888888888887665443332110                               11     24445567


Q ss_pred             HHHHHhccCCCHHHHHHHHHHHHHHHHHh--HHhHHHHHHHHHHHHHhccCCchHHHHHHHHHHH-HHhHhcCCC
Q 046417          222 PCLVEFLCCDDWATRKAAAEVLGKVAVFD--KDLATEYKRSCLAALETRRFDKVKIVRETMNRSL-EMWKEVPGV  293 (595)
Q Consensus       222 p~L~e~L~~dDW~~RkaAaEaLgsIA~av--ge~f~py~~~~I~~Le~crfDKVK~VRda~~~aL-~~~K~i~~~  293 (595)
                      |.|..-+...+-..++.++..++-++.-+  ...+.||++.+++-|+.--.|-++-||..+.+|| -+.+...-.
T Consensus       375 piL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl~~Llp~lk~~~~d~~PEvR~vaarAL~~l~e~~g~~  449 (569)
T KOG1242|consen  375 PILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLPSLLPGLKENLDDAVPEVRAVAARALGALLERLGEV  449 (569)
T ss_pred             HHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhHHHHhhHHHHHhcCCChhHHHHHHHHHHHHHHHHHhh
Confidence            77777777767777888999999999888  4689999999999999999999999999999999 555555533

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]

Probab=98.91  E-value=2.8e-08  Score=98.57  Aligned_cols=193  Identities=18%  Similarity=0.231  Sum_probs=134.1

Q ss_pred             HHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHc-----cccchhhHHHHHHHHHhhccCCChhHHHHHHHHHHHhhhhh
Q 046417           55 FSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSH-----GDSLSPHLSKMISTVSCRLRDPDSSVRSACVAATTAMSLNI  129 (595)
Q Consensus        55 lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~-----gd~I~PhLpkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l  129 (595)
                      +..++..|.....+.+|..|.+++.-|-.++.++     .+.+.++|..++..|+..+.|..+.|-..+|.+++.|+..+
T Consensus         5 ~~~~~~~l~~~~~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l   84 (228)
T PF12348_consen    5 FEEILAALEKKESESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQL   84 (228)
T ss_dssp             -GGS-TTHHHHHT-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhccCCccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence            3445555644445678999999999999999999     35556677788899999999999999888889999999888


Q ss_pred             cCC--cch-hccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCCCchHHHHHHH-HHHHHHhhccCchhHHHHHHHHHHHH
Q 046417          130 TKP--SFS-VLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNPEVEQLRKL-LPRLGKAVRIEGFKAKAAVLGVIGSV  205 (595)
Q Consensus       130 ~~~--~~~-~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d~~~~~L~~L-l~rL~klL~~~~~kaK~alLsAIgSl  205 (595)
                      ...  ++. .++++|+..+ ++.++.+...|..||..+++..+     +..++ .+.+...+++.+.++|..++..+..+
T Consensus        85 ~~~~~~~~~~~l~~Ll~~~-~~~~~~i~~~a~~~L~~i~~~~~-----~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~  158 (228)
T PF12348_consen   85 GSHFEPYADILLPPLLKKL-GDSKKFIREAANNALDAIIESCS-----YSPKILLEILSQGLKSKNPQVREECAEWLAII  158 (228)
T ss_dssp             GGGGHHHHHHHHHHHHHGG-G---HHHHHHHHHHHHHHHTTS------H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHH
T ss_pred             hHhHHHHHHHHHHHHHHHH-ccccHHHHHHHHHHHHHHHHHCC-----cHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence            542  111 2555566665 68888899999999999999764     33455 67777788999999999999999988


Q ss_pred             HHhhc---ccC--cCcHHhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhHHh
Q 046417          206 VRVGG---ARS--KGVLDWLVPCLVEFLCCDDWATRKAAAEVLGKVAVFDKDL  253 (595)
Q Consensus       206 A~a~g---~~~--~~yl~~lmp~L~e~L~~dDW~~RkaAaEaLgsIA~avge~  253 (595)
                      +...+   ..+  ..+++.+++.|..++.|.+-.+|.+|-+++..+....|+.
T Consensus       159 l~~~~~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~~  211 (228)
T PF12348_consen  159 LEKWGSDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPER  211 (228)
T ss_dssp             HTT-----GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-HH
T ss_pred             HHHccchHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHh
Confidence            87544   222  2235889999999999999999999999999999988754

The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=98.84  E-value=6.8e-08  Score=114.76  Aligned_cols=206  Identities=22%  Similarity=0.209  Sum_probs=132.0

Q ss_pred             hHHHHHHHHHHHHHhCCcCcHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccchhhHHHHHHHHHhhccCCChhH
Q 046417           35 TLPVATAELESIARTLTQDSFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPHLSKMISTVSCRLRDPDSSV  114 (595)
Q Consensus        35 T~r~A~~~LD~lA~~L~~~~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~PhLpkIL~~IvrrLkD~ds~V  114 (595)
                      -+..|+..|-.++..++.  .+.++..|.    ++++.+|.+++.+|+.+..+  +         ...+++.|+|+|+.|
T Consensus       668 VR~~Aa~aL~~l~~~~~~--~~~L~~~L~----~~d~~VR~~A~~aL~~~~~~--~---------~~~l~~~L~D~d~~V  730 (897)
T PRK13800        668 VRRAAAEGLRELVEVLPP--APALRDHLG----SPDPVVRAAALDVLRALRAG--D---------AALFAAALGDPDHRV  730 (897)
T ss_pred             HHHHHHHHHHHHHhccCc--hHHHHHHhc----CCCHHHHHHHHHHHHhhccC--C---------HHHHHHHhcCCCHHH
Confidence            566677777777665543  234444443    25678888888887776411  1         113455667777777


Q ss_pred             HHHHHHHHHHhhh------hhcCC-cc---------------hh-ccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCCCc
Q 046417          115 RSACVAATTAMSL------NITKP-SF---------------SV-LSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNP  171 (595)
Q Consensus       115 R~Ac~~aLg~LA~------~l~~~-~~---------------~~-~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d~  171 (595)
                      |.+++.+|+.+..      .+.++ +.               .. .+..|. .++.|.++.|+..|+.+|..+...  . 
T Consensus       731 R~~Av~aL~~~~~~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~~~~~~~L~-~ll~D~d~~VR~aA~~aLg~~g~~--~-  806 (897)
T PRK13800        731 RIEAVRALVSVDDVESVAGAATDENREVRIAVAKGLATLGAGGAPAGDAVR-ALTGDPDPLVRAAALAALAELGCP--P-  806 (897)
T ss_pred             HHHHHHHHhcccCcHHHHHHhcCCCHHHHHHHHHHHHHhccccchhHHHHH-HHhcCCCHHHHHHHHHHHHhcCCc--c-
Confidence            7777777665421      01111 00               00 134444 444788999999999988877432  1 


Q ss_pred             hHHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHhhcccCcCcHHhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhH
Q 046417          172 EVEQLRKLLPRLGKAVRIEGFKAKAAVLGVIGSVVRVGGARSKGVLDWLVPCLVEFLCCDDWATRKAAAEVLGKVAVFDK  251 (595)
Q Consensus       172 ~~~~L~~Ll~rL~klL~~~~~kaK~alLsAIgSlA~a~g~~~~~yl~~lmp~L~e~L~~dDW~~RkaAaEaLgsIA~avg  251 (595)
                            .+.+.+..+|++++..+|.+++.+++.+.          -+..++.|...|.|++|.+|++|+.+|+.+.   +
T Consensus       807 ------~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~----------~~~a~~~L~~~L~D~~~~VR~~A~~aL~~~~---~  867 (897)
T PRK13800        807 ------DDVAAATAALRASAWQVRQGAARALAGAA----------ADVAVPALVEALTDPHLDVRKAAVLALTRWP---G  867 (897)
T ss_pred             ------hhHHHHHHHhcCCChHHHHHHHHHHHhcc----------ccchHHHHHHHhcCCCHHHHHHHHHHHhccC---C
Confidence                  22345777888888889988888887432          1345688999999999999999999999971   1


Q ss_pred             HhHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHH
Q 046417          252 DLATEYKRSCLAALETRRFDKVKIVRETMNRSLEM  286 (595)
Q Consensus       252 e~f~py~~~~I~~Le~crfDKVK~VRda~~~aL~~  286 (595)
                      +      +.....|.....|.-..||..+.+||+.
T Consensus       868 ~------~~a~~~L~~al~D~d~~Vr~~A~~aL~~  896 (897)
T PRK13800        868 D------PAARDALTTALTDSDADVRAYARRALAH  896 (897)
T ss_pred             C------HHHHHHHHHHHhCCCHHHHHHHHHHHhh
Confidence            1      1122233333448889999999999974

>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.81  E-value=4e-07  Score=103.22  Aligned_cols=267  Identities=18%  Similarity=0.193  Sum_probs=197.2

Q ss_pred             hHHHHHHHHHh----hhcCCCC--hHHHHHHHHHHHHHhCC----cC-cHHHHHHhhhhcCCCCChHHHHHHHHHHHHHH
Q 046417           17 NDLKQRVITCL----NKLADRD--TLPVATAELESIARTLT----QD-SFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLS   85 (595)
Q Consensus        17 ~~lk~rvl~~L----~KL~DrD--T~r~A~~~LD~lA~~L~----~~-~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lA   85 (595)
                      ..||-.|.+.|    +.+.|.-  -+..++-.|-+++..++    +. .++..++++.+.. .+.|.+=..++.+|--+|
T Consensus       398 ~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL-~DePrva~N~CWAf~~La  476 (859)
T KOG1241|consen  398 DKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGL-NDEPRVASNVCWAFISLA  476 (859)
T ss_pred             hhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHh-hhCchHHHHHHHHHHHHH
Confidence            34555555443    3335433  33445566666666654    33 3777777777755 356899999999999999


Q ss_pred             HHccc---------cchhhHHHHHHHHHhhccC---CChhHHHHHHHHHHHhhhhhcCCc--------------------
Q 046417           86 RSHGD---------SLSPHLSKMISTVSCRLRD---PDSSVRSACVAATTAMSLNITKPS--------------------  133 (595)
Q Consensus        86 Eg~gd---------~I~PhLpkIL~~IvrrLkD---~ds~VR~Ac~~aLg~LA~~l~~~~--------------------  133 (595)
                      +++.+         ..-|+.+.|+..+++.-.-   .++..|.|+-.||+.|..+..+..                    
T Consensus       477 ea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~vy~~v~~~~l~il~kl~q~i~  556 (859)
T KOG1241|consen  477 EAAYEAAVSNGQTDPATPFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTDDVYPMVQKLTLVILEKLDQTIS  556 (859)
T ss_pred             HHHHHhccCCCCCCccchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99854         3446888888888877443   567899999999999987776410                    


Q ss_pred             --------------c----------h-----hccHH----HHHH---Hhhc-CChhHHHHHHHHHHHHHhcCCCchHHHH
Q 046417          134 --------------F----------S-----VLSKP----LIEL---ILVE-QDVNSQVGGAMCLAAAIDAAPNPEVEQL  176 (595)
Q Consensus       134 --------------~----------~-----~~l~P----Li~a---Ll~d-~nk~VQ~~AA~cLaaviE~a~d~~~~~L  176 (595)
                                    +          +     .-+++    ++..   +++. ..-.++..|.+|+.+++++++..-..|+
T Consensus       557 ~~~l~~~dr~q~~eLQs~Lc~~Lq~i~rk~~~~~~~~~d~iM~lflri~~s~~s~~v~e~a~laV~tl~~~Lg~~F~kym  636 (859)
T KOG1241|consen  557 SQILSLADRAQLNELQSLLCNTLQSIIRKVGSDIREVSDQIMGLFLRIFESKRSAVVHEEAFLAVSTLAESLGKGFAKYM  636 (859)
T ss_pred             HHhccHhhHHHHHHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhHhHHHHH
Confidence                          0          0     00111    1111   1222 3445889999999999999888778899


Q ss_pred             HHHHHHHHHhh-ccCchhHHHHHHHHHHHHHHhhcccCcCcHHhHHHHHHHhccCC--CHHHHHHHHHHHHHHHHHhHHh
Q 046417          177 RKLLPRLGKAV-RIEGFKAKAAVLGVIGSVVRVGGARSKGVLDWLVPCLVEFLCCD--DWATRKAAAEVLGKVAVFDKDL  253 (595)
Q Consensus       177 ~~Ll~rL~klL-~~~~~kaK~alLsAIgSlA~a~g~~~~~yl~~lmp~L~e~L~~d--DW~~RkaAaEaLgsIA~avge~  253 (595)
                      +.+.|-|..-| +-..+++-.++++.+|-++.+-+..+.||.+.+|..|.++|+++  +-.++-+.+-+.|-||.++|..
T Consensus       637 ~~f~pyL~~gL~n~~e~qVc~~aVglVgdl~raL~~~i~py~d~~mt~Lvq~Lss~~~hR~vKP~IlS~FgDIAlaIg~~  716 (859)
T KOG1241|consen  637 PAFKPYLLMGLSNFQEYQVCAAAVGLVGDLARALEDDILPYCDELMTVLVQCLSSPNLHRNVKPAILSVFGDIALAIGAD  716 (859)
T ss_pred             HHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHccCccccccccchHHHHHHHHHHHHHHh
Confidence            99999999999 55689999999999999999999999999999999999999875  5567778889999999999999


Q ss_pred             HHHHHHHHHHHHHhcc---CCc--------hHHHHHHHHHHH
Q 046417          254 ATEYKRSCLAALETRR---FDK--------VKIVRETMNRSL  284 (595)
Q Consensus       254 f~py~~~~I~~Le~cr---fDK--------VK~VRda~~~aL  284 (595)
                      |.+|...++..|....   .|+        +--+|+++.+|-
T Consensus       717 F~~Yl~~vm~llq~as~~~~d~~~~~~~dYvd~LRe~~leay  758 (859)
T KOG1241|consen  717 FEPYLEMVMPLLQQASSVQTDPADDSMVDYVDELREGILEAY  758 (859)
T ss_pred             HHHHHHHHHHHHHHHHhccCCCCcccHHHHHHHHHHHHHHHH
Confidence            9999999998887664   333        455677766653

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B

Probab=98.79  E-value=4.3e-09  Score=82.46  Aligned_cols=55  Identities=27%  Similarity=0.333  Sum_probs=53.3

Q ss_pred             hHHHHHHHHHHHHHHHHccccchhhHHHHHHHHHhhccCCChhHHHHHHHHHHHh
Q 046417           71 SPVRKQCVNLLTLLSRSHGDSLSPHLSKMISTVSCRLRDPDSSVRSACVAATTAM  125 (595)
Q Consensus        71 p~vRKaaI~lLG~lAEg~gd~I~PhLpkIL~~IvrrLkD~ds~VR~Ac~~aLg~L  125 (595)
                      |.+|++++.+||.+++.+++.+.||++++++.++..|+|+++.||.++|++||+|
T Consensus         1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l   55 (55)
T PF13513_consen    1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL   55 (55)
T ss_dssp             HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred             CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence            7899999999999999999999999999999999999999999999999999975

...

>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]

Probab=98.76  E-value=2.7e-07  Score=104.13  Aligned_cols=219  Identities=15%  Similarity=0.182  Sum_probs=154.4

Q ss_pred             hHHHHHHHHHHHHHhCCcCc-----HHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccchhhHHHHHHHHHhhccC
Q 046417           35 TLPVATAELESIARTLTQDS-----FSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPHLSKMISTVSCRLRD  109 (595)
Q Consensus        35 T~r~A~~~LD~lA~~L~~~~-----lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~PhLpkIL~~IvrrLkD  109 (595)
                      -+++.++..+.+...|+...     ...++..|.-.++++....- -.+..||+++...+.-+.||||+|+..|+.+|+.
T Consensus       732 yrkm~~etv~ri~~~lg~~diderleE~lidgil~Afqeqtt~d~-vml~gfg~V~~~lg~r~kpylpqi~stiL~rLnn  810 (1172)
T KOG0213|consen  732 YRKMVAETVSRIVGRLGAADIDERLEERLIDGILYAFQEQTTEDS-VMLLGFGTVVNALGGRVKPYLPQICSTILWRLNN  810 (1172)
T ss_pred             HHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhcccchh-hhhhhHHHHHHHHhhccccchHHHHHHHHHHhcC
Confidence            35778999999999887322     34555555555544443222 4567799999999999999999999999999999


Q ss_pred             CChhHHHHHHHHHHHhhhhhcCC-c--chhccH-HHHHHHhhcCChhHHHHHHHHHHHHHhcCC-CchHHHHHHHHHHHH
Q 046417          110 PDSSVRSACVAATTAMSLNITKP-S--FSVLSK-PLIELILVEQDVNSQVGGAMCLAAAIDAAP-NPEVEQLRKLLPRLG  184 (595)
Q Consensus       110 ~ds~VR~Ac~~aLg~LA~~l~~~-~--~~~~l~-PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~-d~~~~~L~~Ll~rL~  184 (595)
                      +.+.||+-+++.++.++.-+... +  +..+|. -|.+.| ++..+-|-.....||.+++...+ ....|=...|+|+|.
T Consensus       811 ksa~vRqqaadlis~la~Vlktc~ee~~m~~lGvvLyEyl-geeypEvLgsILgAikaI~nvigm~km~pPi~dllPrlt  889 (1172)
T KOG0213|consen  811 KSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGVVLYEYL-GEEYPEVLGSILGAIKAIVNVIGMTKMTPPIKDLLPRLT  889 (1172)
T ss_pred             CChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHHHHhc-CcccHHHHHHHHHHHHHHHHhccccccCCChhhhcccch
Confidence            99999999999999999765321 1  122333 366677 66677666555555555554421 111234567899999


Q ss_pred             HhhccCchhHHHHHHHHHHHHHHhhcccCcCcHHh--HHHHHHHhccCCCHHHHHHHHHHHHHHHHHhH--HhHHH
Q 046417          185 KAVRIEGFKAKAAVLGVIGSVVRVGGARSKGVLDW--LVPCLVEFLCCDDWATRKAAAEVLGKVAVFDK--DLATE  256 (595)
Q Consensus       185 klL~~~~~kaK~alLsAIgSlA~a~g~~~~~yl~~--lmp~L~e~L~~dDW~~RkaAaEaLgsIA~avg--e~f~p  256 (595)
                      -.|++.+-+++...|+.+|.|+.-|.+ +.+.=+|  +-=-|.+.|.+-.-..|.+|.+++|.||.++|  +.+..
T Consensus       890 PILknrheKVqen~IdLvg~IadrgpE-~v~aREWMRIcfeLlelLkahkK~iRRaa~nTfG~IakaIGPqdVLat  964 (1172)
T KOG0213|consen  890 PILKNRHEKVQENCIDLVGTIADRGPE-YVSAREWMRICFELLELLKAHKKEIRRAAVNTFGYIAKAIGPQDVLAT  964 (1172)
T ss_pred             HhhhhhHHHHHHHHHHHHHHHHhcCcc-cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhcCHHHHHHH
Confidence            999999999999999999999975543 2222122  11224556666566789999999999999998  34443

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.74  E-value=7.6e-07  Score=98.18  Aligned_cols=248  Identities=17%  Similarity=0.137  Sum_probs=164.6

Q ss_pred             HHHHHHHHHhhhcCCCChHHHHHHHHHHHHHhCCcCcHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccchhhHH
Q 046417           18 DLKQRVITCLNKLADRDTLPVATAELESIARTLTQDSFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPHLS   97 (595)
Q Consensus        18 ~lk~rvl~~L~KL~DrDT~r~A~~~LD~lA~~L~~~~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~PhLp   97 (595)
                      .+..-+.+...-|.+.++.-. .-+|..++.--.++.++.+++.|.....+++|.+||.|+.++.-+...+++.+...  
T Consensus        76 ~~~l~~n~l~kdl~~~n~~~~-~lAL~~l~~i~~~~~~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~~~~~--  152 (526)
T PF01602_consen   76 LLILIINSLQKDLNSPNPYIR-GLALRTLSNIRTPEMAEPLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDLVEDE--  152 (526)
T ss_dssp             HHHHHHHHHHHHHCSSSHHHH-HHHHHHHHHH-SHHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCCHHGG--
T ss_pred             HHHHHHHHHHHhhcCCCHHHH-HHHHhhhhhhcccchhhHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHHHHHH--
Confidence            344444455555666664422 33455555544677788888888888888899999999999999999999876553  


Q ss_pred             HHHHHHHhhccCCChhHHHHHHHHHHHhhhhhcCCcchhccHHHHHHHh---hcCChhHHHHHHHHHHHHHhcCCCchHH
Q 046417           98 KMISTVSCRLRDPDSSVRSACVAATTAMSLNITKPSFSVLSKPLIELIL---VEQDVNSQVGGAMCLAAAIDAAPNPEVE  174 (595)
Q Consensus        98 kIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~~~~~~~~l~PLi~aLl---~d~nk~VQ~~AA~cLaaviE~a~d~~~~  174 (595)
                       +++.+.+.|.|+++.|+.+++.++..+ ..- +.....++.+++..|.   +..++-.|....-+|..++...   . .
T Consensus       153 -~~~~l~~lL~d~~~~V~~~a~~~l~~i-~~~-~~~~~~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~---~-~  225 (526)
T PF01602_consen  153 -LIPKLKQLLSDKDPSVVSAALSLLSEI-KCN-DDSYKSLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPME---P-E  225 (526)
T ss_dssp             -HHHHHHHHTTHSSHHHHHHHHHHHHHH-HCT-HHHHTTHHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSS---H-H
T ss_pred             -HHHHHhhhccCCcchhHHHHHHHHHHH-ccC-cchhhhhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCC---h-h
Confidence             577888888999999999999888888 111 0010124555555553   6778888877666665444321   1 1


Q ss_pred             HH--HHHHHHHHHhhccCchhHHHHHHHHHHHHHHhhcccCcCcHHhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhHH
Q 046417          175 QL--RKLLPRLGKAVRIEGFKAKAAVLGVIGSVVRVGGARSKGVLDWLVPCLVEFLCCDDWATRKAAAEVLGKVAVFDKD  252 (595)
Q Consensus       175 ~L--~~Ll~rL~klL~~~~~kaK~alLsAIgSlA~a~g~~~~~yl~~lmp~L~e~L~~dDW~~RkaAaEaLgsIA~avge  252 (595)
                      .-  ..+++.+..+|.+.+.   ..+++++..+......  .+++..+++.|..++.+.++.+|..++++|..|+.....
T Consensus       226 ~~~~~~~i~~l~~~l~s~~~---~V~~e~~~~i~~l~~~--~~~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~~~  300 (526)
T PF01602_consen  226 DADKNRIIEPLLNLLQSSSP---SVVYEAIRLIIKLSPS--PELLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSNPP  300 (526)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHSSS--HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHCHH
T ss_pred             hhhHHHHHHHHHHHhhcccc---HHHHHHHHHHHHhhcc--hHHHHhhHHHHHHHhhcccchhehhHHHHHHHhhcccch
Confidence            22  4577777777764443   3445777776654332  236788999999999999999999999999999887744


Q ss_pred             hHHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Q 046417          253 LATEYKRSCLAALETRRFDKVKIVRETMNRSL  284 (595)
Q Consensus       253 ~f~py~~~~I~~Le~crfDKVK~VRda~~~aL  284 (595)
                      .+. +...   .+.-+++|.=..||-.+.+.|
T Consensus       301 ~v~-~~~~---~~~~l~~~~d~~Ir~~~l~lL  328 (526)
T PF01602_consen  301 AVF-NQSL---ILFFLLYDDDPSIRKKALDLL  328 (526)
T ss_dssp             HHG-THHH---HHHHHHCSSSHHHHHHHHHHH
T ss_pred             hhh-hhhh---hhheecCCCChhHHHHHHHHH
Confidence            333 2222   233444455566665544433

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region

Probab=98.72  E-value=7e-08  Score=85.42  Aligned_cols=91  Identities=19%  Similarity=0.193  Sum_probs=78.3

Q ss_pred             HHHHHHHHHHHHHHHccccchhhHHHHHHHHHhhccCCChhHHHHHHHHHHHhhhhhcCCcchhccHHHHHHHh---hcC
Q 046417           73 VRKQCVNLLTLLSRSHGDSLSPHLSKMISTVSCRLRDPDSSVRSACVAATTAMSLNITKPSFSVLSKPLIELIL---VEQ  149 (595)
Q Consensus        73 vRKaaI~lLG~lAEg~gd~I~PhLpkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~~~~~~~~l~PLi~aLl---~d~  149 (595)
                      +|++++..|+.+|.+.+..+.+|+++||+.|++.+.|+|+.||.++|++|..++...-. ....++..+|++|.   .|.
T Consensus         2 ~R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~-~~l~~f~~IF~~L~kl~~D~   80 (97)
T PF12755_consen    2 YRKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARG-EILPYFNEIFDALCKLSADP   80 (97)
T ss_pred             chhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHcCC
Confidence            69999999999999999999999999999999999999999999999999999987742 22237777887774   488


Q ss_pred             ChhHHHHHHHHHHHHH
Q 046417          150 DVNSQVGGAMCLAAAI  165 (595)
Q Consensus       150 nk~VQ~~AA~cLaavi  165 (595)
                      ++.|+.+|.. |+.++
T Consensus        81 d~~Vr~~a~~-Ld~ll   95 (97)
T PF12755_consen   81 DENVRSAAEL-LDRLL   95 (97)
T ss_pred             chhHHHHHHH-HHHHh
Confidence            9999999877 66543

>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.67  E-value=6.4e-07  Score=101.09  Aligned_cols=206  Identities=23%  Similarity=0.247  Sum_probs=151.6

Q ss_pred             CCCCChHHHHHHHHHHHHHHHHccccchhhHHHHHHHHHhhccCCChhHHHHHHHHHHHhhhhhcCCcchhccHHHHHHH
Q 046417           66 DSSSKSPVRKQCVNLLTLLSRSHGDSLSPHLSKMISTVSCRLRDPDSSVRSACVAATTAMSLNITKPSFSVLSKPLIELI  145 (595)
Q Consensus        66 ~ss~kp~vRKaaI~lLG~lAEg~gd~I~PhLpkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~~~~~~~~l~PLi~aL  145 (595)
                      .++.+|++||-||.++--+..-++|++.|-+|++    +..|.||||+|..|++..+..||+.-.+.  ..-|-|+|.-|
T Consensus       153 L~sskpYvRKkAIl~lykvFLkYPeAlr~~FprL----~EkLeDpDp~V~SAAV~VICELArKnPkn--yL~LAP~ffkl  226 (877)
T KOG1059|consen  153 LNSSKPYVRKKAILLLYKVFLKYPEALRPCFPRL----VEKLEDPDPSVVSAAVSVICELARKNPQN--YLQLAPLFYKL  226 (877)
T ss_pred             HhcCchHHHHHHHHHHHHHHHhhhHhHhhhHHHH----HHhccCCCchHHHHHHHHHHHHHhhCCcc--cccccHHHHHH
Confidence            3467899999999999999999999999988865    56899999999999999988888765421  12466777777


Q ss_pred             hhcCChh-HHHHHHHHHHHHHhcCCCchHHHHH-HHHHHHHHhhccCchhHHHHHHHHHHHHHHhh---cc-cCcCcHHh
Q 046417          146 LVEQDVN-SQVGGAMCLAAAIDAAPNPEVEQLR-KLLPRLGKAVRIEGFKAKAAVLGVIGSVVRVG---GA-RSKGVLDW  219 (595)
Q Consensus       146 l~d~nk~-VQ~~AA~cLaaviE~a~d~~~~~L~-~Ll~rL~klL~~~~~kaK~alLsAIgSlA~a~---g~-~~~~yl~~  219 (595)
                      +....-+ +-+.-.--++++     .++.|.|. +|++.|..+++  +..+...++.||.+++.+.   |. .......-
T Consensus       227 lttSsNNWmLIKiiKLF~aL-----tplEPRLgKKLieplt~li~--sT~AmSLlYECvNTVVa~s~s~g~~d~~asiqL  299 (877)
T KOG1059|consen  227 LVTSSNNWVLIKLLKLFAAL-----TPLEPRLGKKLIEPITELME--STVAMSLLYECVNTVVAVSMSSGMSDHSASIQL  299 (877)
T ss_pred             HhccCCCeehHHHHHHHhhc-----cccCchhhhhhhhHHHHHHH--hhHHHHHHHHHHHHheeehhccCCCCcHHHHHH
Confidence            6532211 222211112222     22335555 58899999994  4456788889999988752   21 22234566


Q ss_pred             HHHHHHHhccCCCHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHhHhcC
Q 046417          220 LVPCLVEFLCCDDWATRKAAAEVLGKVAVFDKDLATEYKRSCLAALETRRFDKVKIVRETMNRSLEMWKEVP  291 (595)
Q Consensus       220 lmp~L~e~L~~dDW~~RkaAaEaLgsIA~avge~f~py~~~~I~~Le~crfDKVK~VRda~~~aL~~~K~i~  291 (595)
                      ++.-|..|+.++|..+|--++.||+.|+.....++..++.-+++.|.    ||=..||   .+||.++-.+.
T Consensus       300 CvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vqa~kdlIlrcL~----DkD~SIR---lrALdLl~gmV  364 (877)
T KOG1059|consen  300 CVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQAHKDLILRCLD----DKDESIR---LRALDLLYGMV  364 (877)
T ss_pred             HHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHHHhHHHHHHHhc----cCCchhH---HHHHHHHHHHh
Confidence            78889999999999999999999999999999999999999888887    8877777   45555554433

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]

Probab=98.60  E-value=1.9e-06  Score=85.53  Aligned_cols=174  Identities=17%  Similarity=0.129  Sum_probs=123.1

Q ss_pred             hHHHHHHHHHHHHHhC-CcCcHHHHHH-------hhhhcCCCCChHHHHHHHHHHHHHHHHccccchhhHHHHHHHHHhh
Q 046417           35 TLPVATAELESIARTL-TQDSFSSFLN-------CLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPHLSKMISTVSCR  106 (595)
Q Consensus        35 T~r~A~~~LD~lA~~L-~~~~lp~fL~-------~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~PhLpkIL~~Ivrr  106 (595)
                      .+.-|+..|..++..- +.+..+.|+.       .|.....+.++.+-+.++.+++.++...+..+.||+..++|.++++
T Consensus        23 ~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l~~Ll~~  102 (228)
T PF12348_consen   23 ERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADILLPPLLKK  102 (228)
T ss_dssp             HHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHG
T ss_pred             HHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHH
Confidence            5556888898888866 3233344433       4444556667889999999999999999999999999999999999


Q ss_pred             ccCCChhHHHHHHHHHHHhhhhhcCCcchhccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCC---Cch--HHHHHHHHH
Q 046417          107 LRDPDSSVRSACVAATTAMSLNITKPSFSVLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAP---NPE--VEQLRKLLP  181 (595)
Q Consensus       107 LkD~ds~VR~Ac~~aLg~LA~~l~~~~~~~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~---d~~--~~~L~~Ll~  181 (595)
                      +.|+...||+++..+|-.|..++.  ....++.+++.....+.++.+...++.+|..+++..+   ..+  ...++.+.+
T Consensus       103 ~~~~~~~i~~~a~~~L~~i~~~~~--~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~~  180 (228)
T PF12348_consen  103 LGDSKKFIREAANNALDAIIESCS--YSPKILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQKSAFLKQLVK  180 (228)
T ss_dssp             GG---HHHHHHHHHHHHHHHTTS---H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--HHHHHHHHH
T ss_pred             HccccHHHHHHHHHHHHHHHHHCC--cHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhcccchHHHHHH
Confidence            999999999999999999999873  0112434555555477888888899999999999866   222  124688999


Q ss_pred             HHHHhhccCchhHHHHHHHHHHHHHHhhc
Q 046417          182 RLGKAVRIEGFKAKAAVLGVIGSVVRVGG  210 (595)
Q Consensus       182 rL~klL~~~~~kaK~alLsAIgSlA~a~g  210 (595)
                      -+.+++.+++..+|.++-.++..+...-+
T Consensus       181 ~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~  209 (228)
T PF12348_consen  181 ALVKLLSDADPEVREAARECLWALYSHFP  209 (228)
T ss_dssp             HHHHHHTSS-HHHHHHHHHHHHHHHHHH-
T ss_pred             HHHHHCCCCCHHHHHHHHHHHHHHHHHCC
Confidence            99999999999999999988888876443

The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.

>KOG2032 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.51  E-value=2e-05  Score=86.45  Aligned_cols=258  Identities=16%  Similarity=0.174  Sum_probs=189.6

Q ss_pred             hhcCCCChHHHHHHHHHHHHHhCCcCcHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccch---hhHHHHHHHHH
Q 046417           28 NKLADRDTLPVATAELESIARTLTQDSFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLS---PHLSKMISTVS  104 (595)
Q Consensus        28 ~KL~DrDT~r~A~~~LD~lA~~L~~~~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~---PhLpkIL~~Iv  104 (595)
                      +-|+|.|++++.+..|-..-..-.+..++-++.++.+...+.+|..|-..+.-   +++.-+..+.   +-|..++-.+.
T Consensus       188 ~qls~~~~h~~g~trlqr~m~~~~~~~~~~il~q~~ss~ts~~~~~ritd~Af---~ael~~~~~l~~~~lL~s~~~~la  264 (533)
T KOG2032|consen  188 SQLSDNDIHRVGLTRLQRFMACVQDLEMGKILAQLLSSITSEKENGRITDIAF---FAELKRPKELDKTGLLGSVLLSLA  264 (533)
T ss_pred             hhcccCcccHHHHHHHHHHHHhhCCccHHHHHhhcccccchhcccchHHHHHH---HHHHhCcccccccccHHHHHHHHH
Confidence            44688899999999987644444445688888888888888888877766654   6666665553   47889999999


Q ss_pred             hhccCCChhHHHHHHHHHHHhhhhhcCCc--ch-hccHHHHHHHhhcCChhHHHHHHHHHHHHHhcC-CCchHHHHHHHH
Q 046417          105 CRLRDPDSSVRSACVAATTAMSLNITKPS--FS-VLSKPLIELILVEQDVNSQVGGAMCLAAAIDAA-PNPEVEQLRKLL  180 (595)
Q Consensus       105 rrLkD~ds~VR~Ac~~aLg~LA~~l~~~~--~~-~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a-~d~~~~~L~~Ll  180 (595)
                      .+..||+..+|.-||-.||.+++.+.++.  .. ..+.-++-+|..+.++.||--|..||..+.|-+ .+.+.+|+-.+-
T Consensus       265 ~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~~~~l~ia  344 (533)
T KOG2032|consen  265 NKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDLESYLLNIA  344 (533)
T ss_pred             HhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcchhhhchhHH
Confidence            99999999999999999999998864321  11 256666677766778899999999999999995 566678999999


Q ss_pred             HHHHHhhccCchhHHHHHHHHHHHHHHhhccc----Cc------------------------------------------
Q 046417          181 PRLGKAVRIEGFKAKAAVLGVIGSVVRVGGAR----SK------------------------------------------  214 (595)
Q Consensus       181 ~rL~klL~~~~~kaK~alLsAIgSlA~a~g~~----~~------------------------------------------  214 (595)
                      -|+-.++++..-+++.+++.+.|.++-..|..    |.                                          
T Consensus       345 lrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~va~ACr~~~~~c~p~l~rke~~  424 (533)
T KOG2032|consen  345 LRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPYVARACRSELRTCYPNLVRKELY  424 (533)
T ss_pred             HHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChHHHHHHHHHHHhcCchhHHHHHH
Confidence            99999999998899999998888887643210    00                                          


Q ss_pred             CcH----HhHHHHHHHhc-------------------------cCCCH-HHHHHHHHHHHHHHHHhHHhHHHHH--HHHH
Q 046417          215 GVL----DWLVPCLVEFL-------------------------CCDDW-ATRKAAAEVLGKVAVFDKDLATEYK--RSCL  262 (595)
Q Consensus       215 ~yl----~~lmp~L~e~L-------------------------~~dDW-~~RkaAaEaLgsIA~avge~f~py~--~~~I  262 (595)
                      .||    +..++..+.|.                         .+..| .+|.+|.-..+.+-..+-+-.-+|.  ..+.
T Consensus       425 ~~~q~~ld~~~~~~q~Fyn~~c~~L~~i~~d~l~~~~t~~~~~f~sswe~vr~aavl~t~~~vd~l~~~~c~~~d~~qL~  504 (533)
T KOG2032|consen  425 HLFQESLDTDMARFQAFYNQWCIQLNHIHPDILMLLLTEDQHIFSSSWEQVREAAVLKTTRSVDSLVRAACSSADGLQLR  504 (533)
T ss_pred             HHHhhhhHHhHHHHHHHHHHHHHHHhhhCHHHHHHHHHhchhheecchHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHH
Confidence            011    11122222221                         13468 6777777777777666544444443  4556


Q ss_pred             HHHHhccCCchHHHHHHHHHHHHHhH
Q 046417          263 AALETRRFDKVKIVRETMNRSLEMWK  288 (595)
Q Consensus       263 ~~Le~crfDKVK~VRda~~~aL~~~K  288 (595)
                      ..|...++|--.-|++++.+|++++-
T Consensus       505 ~~ls~l~~dp~pev~~~a~~al~~l~  530 (533)
T KOG2032|consen  505 SSLSTLWRDPRPEVTDSARKALDLLS  530 (533)
T ss_pred             HHHHHHccCCCchhHHHHHHHhhhHh
Confidence            77999999999999999999998763

>KOG0212 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.50  E-value=4.4e-06  Score=92.54  Aligned_cols=255  Identities=15%  Similarity=0.155  Sum_probs=182.7

Q ss_pred             hHHHHHHHHHHHHHhCC----cCcHHHHHH-hhhhcCCCCChHHHHHHHHHHHHHHHHccccchhhHHHHHHHHHhhccC
Q 046417           35 TLPVATAELESIARTLT----QDSFSSFLN-CLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPHLSKMISTVSCRLRD  109 (595)
Q Consensus        35 T~r~A~~~LD~lA~~L~----~~~lp~fL~-~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~PhLpkIL~~IvrrLkD  109 (595)
                      -++.|+-+|+.+++.+-    .++|.-+++ ...++..+.....||+++..++.++-+.|....+|+.+|++=++..+.|
T Consensus        16 kRKaaalelEk~Vk~l~~~~~~~~i~k~I~~L~~d~a~s~~~n~rkGgLiGlAA~~iaLg~~~~~Y~~~iv~Pv~~cf~D   95 (675)
T KOG0212|consen   16 KRKAAALELEKLVKDLVNNNDYDQIRKVISELAGDYAYSPHANMRKGGLIGLAAVAIALGIKDAGYLEKIVPPVLNCFSD   95 (675)
T ss_pred             HHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHhccCcccccccchHHHHHHHHHHhccccHHHHHHhhHHHHHhccC
Confidence            68899999999999874    334888888 5578888888899999999999999999977788999999999999999


Q ss_pred             CChhHHHHHHHHHHHhhhhhcCCcchhccHHHHHHHh---hcCChhHHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHH
Q 046417          110 PDSSVRSACVAATTAMSLNITKPSFSVLSKPLIELIL---VEQDVNSQVGGAMCLAAAIDAA--PNPEVEQLRKLLPRLG  184 (595)
Q Consensus       110 ~ds~VR~Ac~~aLg~LA~~l~~~~~~~~l~PLi~aLl---~d~nk~VQ~~AA~cLaaviE~a--~d~~~~~L~~Ll~rL~  184 (595)
                      +|..||--+|++|=-++.-+- .....|+.-+|++|-   .|.+.+|+.+|-+ |+.++...  .....=-++.++|-|-
T Consensus        96 ~d~~vRyyACEsLYNiaKv~k-~~v~~~Fn~iFdvL~klsaDsd~~V~~~aeL-LdRLikdIVte~~~tFsL~~~ipLL~  173 (675)
T KOG0212|consen   96 QDSQVRYYACESLYNIAKVAK-GEVLVYFNEIFDVLCKLSADSDQNVRGGAEL-LDRLIKDIVTESASTFSLPEFIPLLR  173 (675)
T ss_pred             ccceeeeHhHHHHHHHHHHhc-cCcccchHHHHHHHHHHhcCCccccccHHHH-HHHHHHHhccccccccCHHHHHHHHH
Confidence            999999999999988887552 233358888888873   4788889988877 88877652  1110112334444333


Q ss_pred             HhhccCchhHHHHHHHHHHHHHHhhcccCcCcHHhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhH---HhHHHHHHHH
Q 046417          185 KAVRIEGFKAKAAVLGVIGSVVRVGGARSKGVLDWLVPCLVEFLCCDDWATRKAAAEVLGKVAVFDK---DLATEYKRSC  261 (595)
Q Consensus       185 klL~~~~~kaK~alLsAIgSlA~a~g~~~~~yl~~lmp~L~e~L~~dDW~~RkaAaEaLgsIA~avg---e~f~py~~~~  261 (595)
                      .-+-..+...|..+++-|.-+-.+-+..+-.|++.+++.|..+|+|+.-.+|--+=-+|+.+-..+.   ..| .| ...
T Consensus       174 eriy~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~P~s~-d~-~~~  251 (675)
T KOG0212|consen  174 ERIYVINPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSSPSSM-DY-DDM  251 (675)
T ss_pred             HHHhcCCchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCcccc-Cc-ccc
Confidence            3333335557788899888777777777889999999999999999999999877777777765553   121 11 122


Q ss_pred             HHHHHhccCCchHHHHHHHHHHHHHhHhcCCC
Q 046417          262 LAALETRRFDKVKIVRETMNRSLEMWKEVPGV  293 (595)
Q Consensus       262 I~~Le~crfDKVK~VRda~~~aL~~~K~i~~~  293 (595)
                      ++++-..---....++..+..=|+-.-.|+|.
T Consensus       252 i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~  283 (675)
T KOG0212|consen  252 INVLVPHLQSSEPEIQLKALTWIQEFVKIPGR  283 (675)
T ss_pred             hhhccccccCCcHHHHHHHHHHHHHHhcCCCc
Confidence            33322222223455555555555555556654

>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.49  E-value=2.2e-06  Score=95.17  Aligned_cols=246  Identities=16%  Similarity=0.182  Sum_probs=168.2

Q ss_pred             HHHHHHHHhhhcCCCChHHHHHHHHHHHHHhC--------CcCcHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHcc-
Q 046417           19 LKQRVITCLNKLADRDTLPVATAELESIARTL--------TQDSFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHG-   89 (595)
Q Consensus        19 lk~rvl~~L~KL~DrDT~r~A~~~LD~lA~~L--------~~~~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~g-   89 (595)
                      .-.+++++|.+=.+...+--|+-.|-.||..-        +...+|.|+.++..    +...+|+.++-+||.+|--.+ 
T Consensus       110 ~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~s----~~~~v~eQavWALgNIagds~~  185 (514)
T KOG0166|consen  110 VVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLLSS----PSADVREQAVWALGNIAGDSPD  185 (514)
T ss_pred             cHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHHhcC----CcHHHHHHHHHHHhccccCChH
Confidence            34455666654222334445888888888742        24448888888875    457999999999999986543 


Q ss_pred             --ccchhhHHHHHHHHHhhccCCCh--hHHHHHHHHHHHhhhhhcCCcchhccHHHHHH---HhhcCChhHHHHHHHHHH
Q 046417           90 --DSLSPHLSKMISTVSCRLRDPDS--SVRSACVAATTAMSLNITKPSFSVLSKPLIEL---ILVEQDVNSQVGGAMCLA  162 (595)
Q Consensus        90 --d~I~PhLpkIL~~IvrrLkD~ds--~VR~Ac~~aLg~LA~~l~~~~~~~~l~PLi~a---Ll~d~nk~VQ~~AA~cLa  162 (595)
                        |++..+  .+|.-++..+..+++  .+|. +.|+|..|++.--..|....+.+++.+   |+...|..|...||-||.
T Consensus       186 ~Rd~vl~~--g~l~pLl~~l~~~~~~~~lRn-~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAls  262 (514)
T KOG0166|consen  186 CRDYVLSC--GALDPLLRLLNKSDKLSMLRN-ATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALS  262 (514)
T ss_pred             HHHHHHhh--cchHHHHHHhccccchHHHHH-HHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence              555442  456666677777765  4554 569999999876322222233344443   346889999999999999


Q ss_pred             HHHhcCCCchHH-HHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHhhcccCcCcH-HhHHHHHHHhcc-CCCHHHHHHH
Q 046417          163 AAIDAAPNPEVE-QLRKLLPRLGKAVRIEGFKAKAAVLGVIGSVVRVGGARSKGVL-DWLVPCLVEFLC-CDDWATRKAA  239 (595)
Q Consensus       163 aviE~a~d~~~~-~L~~Ll~rL~klL~~~~~kaK~alLsAIgSlA~a~g~~~~~yl-~~lmp~L~e~L~-~dDW~~RkaA  239 (595)
                      -+.++..+.+-- +--.++|||+++|.++..+++..+|-+||.|+...+.-....+ ..++|+|..+++ +..-..||.|
T Consensus       263 yLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEA  342 (514)
T KOG0166|consen  263 YLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEA  342 (514)
T ss_pred             HHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHH
Confidence            999887665532 3345999999999999999998889999986643222111111 346889999988 5555689999


Q ss_pred             HHHHHHHHHHhHHh-----HHHHHHHHHHHHHhccCC
Q 046417          240 AEVLGKVAVFDKDL-----ATEYKRSCLAALETRRFD  271 (595)
Q Consensus       240 aEaLgsIA~avge~-----f~py~~~~I~~Le~crfD  271 (595)
                      +=+|+-|+..-.+-     -+...+.++.+|+..-||
T Consensus       343 cW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~ef~  379 (514)
T KOG0166|consen  343 CWTISNITAGNQEQIQAVIDANLIPVLINLLQTAEFD  379 (514)
T ss_pred             HHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhccchH
Confidence            99999998744321     223457888889888554

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=98.42  E-value=8.3e-06  Score=96.34  Aligned_cols=189  Identities=21%  Similarity=0.244  Sum_probs=133.3

Q ss_pred             HHHHHHhhhhcCCCCC-hHHHHHHHHHHHHHHHHccccchhhHHHHHHHHHhhccCCChhHHHHHHHHHHHhhhhhcCCc
Q 046417           55 FSSFLNCLQTTDSSSK-SPVRKQCVNLLTLLSRSHGDSLSPHLSKMISTVSCRLRDPDSSVRSACVAATTAMSLNITKPS  133 (595)
Q Consensus        55 lp~fL~~L~d~~ss~k-p~vRKaaI~lLG~lAEg~gd~I~PhLpkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~~~~  133 (595)
                      ++.+.+||..    -+ +..|.+++.+|..++..-.+-  .-|.+|+||++-.+.|+++.||.++..||.++-..+-+.+
T Consensus       424 vs~lts~IR~----lk~~~tK~~ALeLl~~lS~~i~de--~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~  497 (1431)
T KOG1240|consen  424 VSVLTSCIRA----LKTIQTKLAALELLQELSTYIDDE--VKLDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIP  497 (1431)
T ss_pred             HHHHHHHHHh----hhcchhHHHHHHHHHHHhhhcchH--HHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCC
Confidence            4455555544    33 578889999998888766543  2577999999999999999999999999998887665422


Q ss_pred             ------chhccHHHHHHHhhc-CChhHHHHHHHHHHHHHhcC------------------CCc---h----HHHHHH---
Q 046417          134 ------FSVLSKPLIELILVE-QDVNSQVGGAMCLAAAIDAA------------------PNP---E----VEQLRK---  178 (595)
Q Consensus       134 ------~~~~l~PLi~aLl~d-~nk~VQ~~AA~cLaaviE~a------------------~d~---~----~~~L~~---  178 (595)
                            +..|+-|-+..|+.| ....|-++=|.||+.+-+.|                  ++.   .    ..+++.   
T Consensus       498 ~~daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~  577 (1431)
T KOG1240|consen  498 PSDANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALHH  577 (1431)
T ss_pred             cccchhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHHH
Confidence                  123777877777767 45557777677766543211                  110   0    113333   


Q ss_pred             -HHHHHHHhhccCchhHHHHHHHHHHHHHHhhcccCcCcHHhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhH
Q 046417          179 -LLPRLGKAVRIEGFKAKAAVLGVIGSVVRVGGARSKGVLDWLVPCLVEFLCCDDWATRKAAAEVLGKVAVFDK  251 (595)
Q Consensus       179 -Ll~rL~klL~~~~~kaK~alLsAIgSlA~a~g~~~~~yl~~lmp~L~e~L~~dDW~~RkaAaEaLgsIA~avg  251 (595)
                       +-..+..+|.++...+|.+++..|+-+-.==|..  .--+.+++.|..||.|.||.+|.+-+|.|.-|+..+|
T Consensus       578 ~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~--ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG  649 (1431)
T KOG1240|consen  578 TVEQMVSSLLSDSPPIVKRALLESIIPLCVFFGKE--KSNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVG  649 (1431)
T ss_pred             HHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhhhc--ccccchHHHHHHHhcCccHHHHHHHHhhccceEEEEe
Confidence             3344556777777789999998877665422221  1126789999999999999999999999999988776

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=98.39  E-value=2.3e-05  Score=98.58  Aligned_cols=241  Identities=17%  Similarity=0.162  Sum_probs=169.1

Q ss_pred             cCCCChHHHHHHHHHHHHHh--------CCcCcHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccchhh-HHHHH
Q 046417           30 LADRDTLPVATAELESIART--------LTQDSFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPH-LSKMI  100 (595)
Q Consensus        30 L~DrDT~r~A~~~LD~lA~~--------L~~~~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~Ph-LpkIL  100 (595)
                      ..+.|.+.-|+..|..++.+        .....++.|+..|..    .+...|+.++.+|+.++.+..+....- =...+
T Consensus       415 ~~~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s----~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaI  490 (2102)
T PLN03200        415 MATADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGL----SSEQQQEYAVALLAILTDEVDESKWAITAAGGI  490 (2102)
T ss_pred             cCCHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcC----CCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCH
Confidence            34567778888888777743        123347888887774    457899999999999998765422111 13568


Q ss_pred             HHHHhhccCCChhHHHHHHHHHHHhhhhhcCC-cch---hccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCCCchHHHH
Q 046417          101 STVSCRLRDPDSSVRSACVAATTAMSLNITKP-SFS---VLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNPEVEQL  176 (595)
Q Consensus       101 ~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~~~-~~~---~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d~~~~~L  176 (595)
                      |.+++.|+.++..++..|+|+|+.++.+-.+. ..+   -.++||++.| ...+..+|.-|+.+|..++......     
T Consensus       491 P~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL-~sgd~~~q~~Aa~AL~nLi~~~d~~-----  564 (2102)
T PLN03200        491 PPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLL-KNGGPKGQEIAAKTLTKLVRTADAA-----  564 (2102)
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHH-hCCCHHHHHHHHHHHHHHHhccchh-----
Confidence            88999999999999999999999999642110 111   2688999998 6778889999999999998764332     


Q ss_pred             HHHHHHHHHhhccCchhHHHHHHHHHHHHHHhhccc--CcCc--HHhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhHH
Q 046417          177 RKLLPRLGKAVRIEGFKAKAAVLGVIGSVVRVGGAR--SKGV--LDWLVPCLVEFLCCDDWATRKAAAEVLGKVAVFDKD  252 (595)
Q Consensus       177 ~~Ll~rL~klL~~~~~kaK~alLsAIgSlA~a~g~~--~~~y--l~~lmp~L~e~L~~dDW~~RkaAaEaLgsIA~avge  252 (595)
                        .++.+..+|.++..+.+..++.++|.+...+...  ....  ....+|.|.+.+.+++-..++.|+.+|..++..-.+
T Consensus       565 --~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d  642 (2102)
T PLN03200        565 --TISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQD  642 (2102)
T ss_pred             --HHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChH
Confidence              3366677888888888888899999887754321  0000  135789999999999989999999999999864332


Q ss_pred             h-----HHHHHHHHHHHHHhccCCchHHHHHHHHHHHHH
Q 046417          253 L-----ATEYKRSCLAALETRRFDKVKIVRETMNRSLEM  286 (595)
Q Consensus       253 ~-----f~py~~~~I~~Le~crfDKVK~VRda~~~aL~~  286 (595)
                      .     ...-.++++..|....||    ||..+..||-.
T Consensus       643 ~~~avv~agaIpPLV~LLss~~~~----v~keAA~AL~n  677 (2102)
T PLN03200        643 LCESLATDEIINPCIKLLTNNTEA----VATQSARALAA  677 (2102)
T ss_pred             HHHHHHHcCCHHHHHHHHhcCChH----HHHHHHHHHHH
Confidence            1     122245666677655443    34444445433

>KOG0915 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.38  E-value=7.7e-06  Score=98.38  Aligned_cols=224  Identities=17%  Similarity=0.198  Sum_probs=162.3

Q ss_pred             HHHHHHHHHHhCC-cCcHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccchhhHHHHHHHHHhhccCCChhHHHH
Q 046417           39 ATAELESIARTLT-QDSFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPHLSKMISTVSCRLRDPDSSVRSA  117 (595)
Q Consensus        39 A~~~LD~lA~~L~-~~~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~PhLpkIL~~IvrrLkD~ds~VR~A  117 (595)
                      -.++|=.||..|+ |+.+--||+.=..   +.-|..|+.+.-=||+|++-.++.+.||++++||-+.|-==||+..|++|
T Consensus       941 TYKELc~LASdl~qPdLVYKFM~LAnh---~A~wnSk~GaAfGf~~i~~~a~~kl~p~l~kLIPrLyRY~yDP~~~Vq~a 1017 (1702)
T KOG0915|consen  941 TYKELCNLASDLGQPDLVYKFMQLANH---NATWNSKKGAAFGFGAIAKQAGEKLEPYLKKLIPRLYRYQYDPDKKVQDA 1017 (1702)
T ss_pred             HHHHHHHHHhhcCChHHHHHHHHHhhh---hchhhcccchhhchHHHHHHHHHhhhhHHHHhhHHHhhhccCCcHHHHHH
Confidence            3579999999998 5667788876543   34599999999999999999999999999999999999999999999987


Q ss_pred             HHHHHHHhhhh---hcCCcchhccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHHhhccCchh
Q 046417          118 CVAATTAMSLN---ITKPSFSVLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAP-NPEVEQLRKLLPRLGKAVRIEGFK  193 (595)
Q Consensus       118 c~~aLg~LA~~---l~~~~~~~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~-d~~~~~L~~Ll~rL~klL~~~~~k  193 (595)
                      -..--+.|...   ..+.-+-.+++-|+..| ++..=.|.+++|+||.-++.+=+ +...+.+++|-..+++..++=+=-
T Consensus      1018 M~sIW~~Li~D~k~~vd~y~neIl~eLL~~l-t~kewRVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDDIKEs 1096 (1702)
T KOG0915|consen 1018 MTSIWNALITDSKKVVDEYLNEILDELLVNL-TSKEWRVREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDDIKES 1096 (1702)
T ss_pred             HHHHHHHhccChHHHHHHHHHHHHHHHHHhc-cchhHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            64333333321   11000001444455555 56777899999999999999843 333577888888888888654333


Q ss_pred             HHHHHH---HHHHHHHH-----hhcccCcCcHHhHHHHHHHh-ccCCCHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHH
Q 046417          194 AKAAVL---GVIGSVVR-----VGGARSKGVLDWLVPCLVEF-LCCDDWATRKAAAEVLGKVAVFDKDLATEYKRSCLAA  264 (595)
Q Consensus       194 aK~alL---sAIgSlA~-----a~g~~~~~yl~~lmp~L~e~-L~~dDW~~RkaAaEaLgsIA~avge~f~py~~~~I~~  264 (595)
                      +|.|+=   ++++.+..     +.+......++.++|+|.+- ..++-=.+|..++-+|..|+...|..+.||.+..|..
T Consensus      1097 VR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~~iLPfLl~~gims~v~evr~~si~tl~dl~Kssg~~lkP~~~~LIp~ 1176 (1702)
T KOG0915|consen 1097 VREAADKAARALSKLCVRICDVTNGAKGKEALDIILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSGKELKPHFPKLIPL 1176 (1702)
T ss_pred             HHHHHHHHHHHHHHHHhhhcccCCcccHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHhchhhhcchhhHHHHH
Confidence            554433   45555443     12344567788888888765 2366678999999999999999998888887666555


Q ss_pred             HH
Q 046417          265 LE  266 (595)
Q Consensus       265 Le  266 (595)
                      |-
T Consensus      1177 ll 1178 (1702)
T KOG0915|consen 1177 LL 1178 (1702)
T ss_pred             HH
Confidence            43

>KOG0915 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.36  E-value=4.8e-06  Score=100.11  Aligned_cols=234  Identities=18%  Similarity=0.147  Sum_probs=171.1

Q ss_pred             CcHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHcc--ccchhhHHHHHHHHHhhccCCChhHHHHHHHHHHHhhhhhc
Q 046417           53 DSFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHG--DSLSPHLSKMISTVSCRLRDPDSSVRSACVAATTAMSLNIT  130 (595)
Q Consensus        53 ~~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~g--d~I~PhLpkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~  130 (595)
                      ..+..++..|..-..+++|..|++++--|=.+...|+  ..+.-++++|.......|.|.|.-+++.+...||..=+ +.
T Consensus       814 ~~~~~~~~~l~~~~~s~nph~R~A~~VWLLs~vq~l~~~~~v~l~~~eI~~aF~~~Lsd~dEf~QDvAsrGlglVYe-lg  892 (1702)
T KOG0915|consen  814 TRETIILKLLDTLLTSPNPHERQAGCVWLLSLVQYLGQQPEVVLMLKEIQEAFSHLLSDNDEFSQDVASRGLGLVYE-LG  892 (1702)
T ss_pred             ccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhhhccHHHHHHHHHHhcccHHHHHHHHhcCceEEEe-cC
Confidence            3366777777776788999999999888878888887  66788999999999999999999999999888664221 11


Q ss_pred             CC---------------------------------------c---chh---ccHHHHHHHhhcCC--------------h
Q 046417          131 KP---------------------------------------S---FSV---LSKPLIELILVEQD--------------V  151 (595)
Q Consensus       131 ~~---------------------------------------~---~~~---~l~PLi~aLl~d~n--------------k  151 (595)
                      +.                                       |   -++   -+-.|..-| ++++              =
T Consensus       893 d~~~k~~LV~sL~~tl~~Gkr~~~~vs~eTelFq~G~Lg~Tp~Gg~isTYKELc~LASdl-~qPdLVYKFM~LAnh~A~w  971 (1702)
T KOG0915|consen  893 DSSLKKSLVDSLVNTLTGGKRKAIKVSEETELFQEGTLGKTPDGGKISTYKELCNLASDL-GQPDLVYKFMQLANHNATW  971 (1702)
T ss_pred             CchhHHHHHHHHHHHHhccccccceeccchhcccCCcCCCCCCCCcchHHHHHHHHHhhc-CChHHHHHHHHHhhhhchh
Confidence            10                                       0   000   111222222 1111              1


Q ss_pred             hHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHhhcccCcCcHHhHHHHHHHhccCC
Q 046417          152 NSQVGGAMCLAAAIDAAPNPEVEQLRKLLPRLGKAVRIEGFKAKAAVLGVIGSVVRVGGARSKGVLDWLVPCLVEFLCCD  231 (595)
Q Consensus       152 ~VQ~~AA~cLaaviE~a~d~~~~~L~~Ll~rL~klL~~~~~kaK~alLsAIgSlA~a~g~~~~~yl~~lmp~L~e~L~~d  231 (595)
                      +...|||-.+.++.+.+.+.+.||+.+|+|||+++-=+|..+++.+-.+.-++++.-....-..|+..++.-|..-+++.
T Consensus       972 nSk~GaAfGf~~i~~~a~~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~neIl~eLL~~lt~k 1051 (1702)
T KOG0915|consen  972 NSKKGAAFGFGAIAKQAGEKLEPYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVDEYLNEILDELLVNLTSK 1051 (1702)
T ss_pred             hcccchhhchHHHHHHHHHhhhhHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhccch
Confidence            12357888899999999888999999999999999999999999888888887775444444688999999999999999


Q ss_pred             CHHHHHHHHHHHHHHHHHhH-HhHHH----HHHHHHHHHHhccCCchHHHHHHHHHHHHHhHhcCC
Q 046417          232 DWATRKAAAEVLGKVAVFDK-DLATE----YKRSCLAALETRRFDKVKIVRETMNRSLEMWKEVPG  292 (595)
Q Consensus       232 DW~~RkaAaEaLgsIA~avg-e~f~p----y~~~~I~~Le~crfDKVK~VRda~~~aL~~~K~i~~  292 (595)
                      +|++|.++|.||.-+-..-. +-+..    +-..+.++++    |=.-.||+++..+...+-.+--
T Consensus      1052 ewRVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmD----DIKEsVR~aa~~~~~~lsKl~v 1113 (1702)
T KOG0915|consen 1052 EWRVREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMD----DIKESVREAADKAARALSKLCV 1113 (1702)
T ss_pred             hHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999998876542 23333    3334344443    4347899999999988877543

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region

Probab=98.36  E-value=3.1e-06  Score=75.01  Aligned_cols=93  Identities=19%  Similarity=0.117  Sum_probs=79.4

Q ss_pred             HHHHHHHHHHHhhcccCcCcHHhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHhccCCchHHH
Q 046417          197 AVLGVIGSVVRVGGARSKGVLDWLVPCLVEFLCCDDWATRKAAAEVLGKVAVFDKDLATEYKRSCLAALETRRFDKVKIV  276 (595)
Q Consensus       197 alLsAIgSlA~a~g~~~~~yl~~lmp~L~e~L~~dDW~~RkaAaEaLgsIA~avge~f~py~~~~I~~Le~crfDKVK~V  276 (595)
                      +.+-++++++.+-+.....|++.++|++..++.|+||.+|..|+|+|+.|+...++.+.+|.+.+...|-..-.|--.-|
T Consensus         5 ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d~~V   84 (97)
T PF12755_consen    5 GGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPDENV   84 (97)
T ss_pred             HHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhH
Confidence            44455666665555557899999999999999999999999999999999999988778899999999998888999999


Q ss_pred             HHHHHHHHHHhHh
Q 046417          277 RETMNRSLEMWKE  289 (595)
Q Consensus       277 Rda~~~aL~~~K~  289 (595)
                      |.++..--+++|+
T Consensus        85 r~~a~~Ld~llkd   97 (97)
T PF12755_consen   85 RSAAELLDRLLKD   97 (97)
T ss_pred             HHHHHHHHHHhcC
Confidence            9998777777663

>KOG0212 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.36  E-value=4.9e-05  Score=84.51  Aligned_cols=267  Identities=15%  Similarity=0.126  Sum_probs=198.5

Q ss_pred             HHHHHHHhhhcC-CCC-hHHHHHHHHHHHHHhCC--cC-c--HHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccc
Q 046417           20 KQRVITCLNKLA-DRD-TLPVATAELESIARTLT--QD-S--FSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSL   92 (595)
Q Consensus        20 k~rvl~~L~KL~-DrD-T~r~A~~~LD~lA~~L~--~~-~--lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I   92 (595)
                      ...+..+|-||+ |-| +-+-|++.||++.+.+.  .. .  ++.|++.|.+.....+|..|.+.+.-+-++=..-+-.+
T Consensus       123 Fn~iFdvL~klsaDsd~~V~~~aeLLdRLikdIVte~~~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~~~m  202 (675)
T KOG0212|consen  123 FNEIFDVLCKLSADSDQNVRGGAELLDRLIKDIVTESASTFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSVPDLEM  202 (675)
T ss_pred             hHHHHHHHHHHhcCCccccccHHHHHHHHHHHhccccccccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCcHHH
Confidence            456677888884 666 78889999999999875  22 2  89999999999888899999999999999988888788


Q ss_pred             hhhHHHHHHHHHhhccCCChhHHHHHHHHHHHhhhhhcCCcchh----ccHHHHHHHhhcCChhHHHHHHHHHHHHHhcC
Q 046417           93 SPHLSKMISTVSCRLRDPDSSVRSACVAATTAMSLNITKPSFSV----LSKPLIELILVEQDVNSQVGGAMCLAAAIDAA  168 (595)
Q Consensus        93 ~PhLpkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~~~~~~~----~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a  168 (595)
                      ..|||.+++-+.+-|.|+...||.-|-.+++.+=..+...|...    ...-|+..+ +.+++-.|..|..=+..++.-.
T Consensus       203 ~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~P~s~d~~~~i~vlv~~l-~ss~~~iq~~al~Wi~efV~i~  281 (675)
T KOG0212|consen  203 ISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSSPSSMDYDDMINVLVPHL-QSSEPEIQLKALTWIQEFVKIP  281 (675)
T ss_pred             HhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCccccCcccchhhccccc-cCCcHHHHHHHHHHHHHHhcCC
Confidence            99999999999999999999999999999988887775444331    233344444 5678888988877778888777


Q ss_pred             CCchHHHHHHHHHHHHHhhccCchh-HH---HHHHHHHHHHHHhh--cccCcCcHHhHHHHHHHhccCCCHHHHHHHHHH
Q 046417          169 PNPEVEQLRKLLPRLGKAVRIEGFK-AK---AAVLGVIGSVVRVG--GARSKGVLDWLVPCLVEFLCCDDWATRKAAAEV  242 (595)
Q Consensus       169 ~d~~~~~L~~Ll~rL~klL~~~~~k-aK---~alLsAIgSlA~a~--g~~~~~yl~~lmp~L~e~L~~dDW~~RkaAaEa  242 (595)
                      +...++|+.+++..++.++.+..-+ .|   ..+-..+-++....  +..  --+..+|..|..+++++.-.+|.++.+-
T Consensus       282 g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~--id~~~ii~vl~~~l~~~~~~tri~~L~W  359 (675)
T KOG0212|consen  282 GRDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEE--IDYGSIIEVLTKYLSDDREETRIAVLNW  359 (675)
T ss_pred             CcchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhhhccc--cchHHHHHHHHHHhhcchHHHHHHHHHH
Confidence            8888899999999999999765443 33   22223344444322  221  1235789999999999999999999999


Q ss_pred             HHHHHHHhH-HhHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHhHhcCCC
Q 046417          243 LGKVAVFDK-DLATEYKRSCLAALETRRFDKVKIVRETMNRSLEMWKEVPGV  293 (595)
Q Consensus       243 LgsIA~avg-e~f~py~~~~I~~Le~crfDKVK~VRda~~~aL~~~K~i~~~  293 (595)
                      +-.+-.-.+ +.+. |...+...|-..-.|.=-   +.+..+|.++..|...
T Consensus       360 i~~l~~~~p~ql~~-h~~~if~tLL~tLsd~sd---~vvl~~L~lla~i~~s  407 (675)
T KOG0212|consen  360 IILLYHKAPGQLLV-HNDSIFLTLLKTLSDRSD---EVVLLALSLLASICSS  407 (675)
T ss_pred             HHHHHhhCcchhhh-hccHHHHHHHHhhcCchh---HHHHHHHHHHHHHhcC
Confidence            999877664 4444 444444443333335433   3467788888888744

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=98.34  E-value=5e-05  Score=95.66  Aligned_cols=252  Identities=12%  Similarity=0.128  Sum_probs=179.6

Q ss_pred             CCCChHHHHHHHHHHHHHhCCcCcHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccc-cchhh---HHHHHHHHHhh
Q 046417           31 ADRDTLPVATAELESIARTLTQDSFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGD-SLSPH---LSKMISTVSCR  106 (595)
Q Consensus        31 ~DrDT~r~A~~~LD~lA~~L~~~~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd-~I~Ph---LpkIL~~Ivrr  106 (595)
                      +|...++.|+..|-.++..-+++.+++++..|.    ++++..+..+++.+|.+...... .+...   -...++.|+..
T Consensus       542 gd~~~q~~Aa~AL~nLi~~~d~~~I~~Lv~LLl----sdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~L  617 (2102)
T PLN03200        542 GGPKGQEIAAKTLTKLVRTADAATISQLTALLL----GDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQL  617 (2102)
T ss_pred             CCHHHHHHHHHHHHHHHhccchhHHHHHHHHhc----CCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHH
Confidence            455588889999999988777777888776643    45678888999999988775542 11111   13578899999


Q ss_pred             ccCCChhHHHHHHHHHHHhhhhhcCCc--ch--hccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCCCch-HHHHHH-HH
Q 046417          107 LRDPDSSVRSACVAATTAMSLNITKPS--FS--VLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNPE-VEQLRK-LL  180 (595)
Q Consensus       107 LkD~ds~VR~Ac~~aLg~LA~~l~~~~--~~--~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d~~-~~~L~~-Ll  180 (595)
                      |+.++..++.-++|+|..|+..-.+..  .+  -.++||+..| ...+..++..||.||..+..+....- ..++.. .+
T Consensus       618 L~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LL-ss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV  696 (2102)
T PLN03200        618 LSSSKEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLL-TNNTEAVATQSARALAALSRSIKENRKVSYAAEDAI  696 (2102)
T ss_pred             HcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHH-hcCChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCH
Confidence            999999999999999999986432211  11  2789999998 56777789999999999886543322 234443 78


Q ss_pred             HHHHHhhccCchhHHHHHHHHHHHHHHhhcccCcCcHHhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHh--HHhHHHHH
Q 046417          181 PRLGKAVRIEGFKAKAAVLGVIGSVVRVGGARSKGVLDWLVPCLVEFLCCDDWATRKAAAEVLGKVAVFD--KDLATEYK  258 (595)
Q Consensus       181 ~rL~klL~~~~~kaK~alLsAIgSlA~a~g~~~~~yl~~lmp~L~e~L~~dDW~~RkaAaEaLgsIA~av--ge~f~py~  258 (595)
                      +.|+++|+.++..++..++.+++.++..+.....-.-...++.|.++|.+..-..|..|+-+|..+....  .+.+..|.
T Consensus       697 ~pL~~LL~~~d~~v~e~Al~ALanLl~~~e~~~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~~~~~~~~~~~~  776 (2102)
T PLN03200        697 KPLIKLAKSSSIEVAEQAVCALANLLSDPEVAAEALAEDIILPLTRVLREGTLEGKRNAARALAQLLKHFPVDDVLKDSV  776 (2102)
T ss_pred             HHHHHHHhCCChHHHHHHHHHHHHHHcCchHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhCCChhHHHHHHH
Confidence            8899999999999999999999999976532211111345899999999888899999999999998754  24444443


Q ss_pred             ------HHHHHHHHhccCCchHHHHHHHHHHHHHhHh
Q 046417          259 ------RSCLAALETRRFDKVKIVRETMNRSLEMWKE  289 (595)
Q Consensus       259 ------~~~I~~Le~crfDKVK~VRda~~~aL~~~K~  289 (595)
                            ...+.+|+.--+|-+.. -| +.++|..+-+
T Consensus       777 ~~~g~v~~l~~~L~~~~~~~~~~-~~-al~~l~~l~~  811 (2102)
T PLN03200        777 QCRGTVLALVDLLNSTDLDSSAT-SE-ALEALALLAR  811 (2102)
T ss_pred             HHhCcHHHHHHHHhcCCcchhhH-HH-HHHHHHHHHh
Confidence                  44566677665654432 11 2444544444

>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.34  E-value=5.9e-06  Score=91.80  Aligned_cols=216  Identities=14%  Similarity=0.144  Sum_probs=156.6

Q ss_pred             CCChHHHHHHHHHHHHHhCC---------cCcHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccchhh-HHHHHH
Q 046417           32 DRDTLPVATAELESIARTLT---------QDSFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPH-LSKMIS  101 (595)
Q Consensus        32 DrDT~r~A~~~LD~lA~~L~---------~~~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~Ph-LpkIL~  101 (595)
                      |.+.+..|.+.+-.+...-.         ...+|.|+.++..   +.++..+.++.-+|..+|.|-.+.-.-. =...+|
T Consensus        79 ~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~---~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp  155 (514)
T KOG0166|consen   79 DPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSR---DDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVP  155 (514)
T ss_pred             CHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHcc---CCChhHHHHHHHHHHHHhcCchhhccccccCCchH
Confidence            44455556666655444321         2337888888873   3468899999999999999876433111 124577


Q ss_pred             HHHhhccCCChhHHHHHHHHHHHhhhhhcCCcch----hccHHHHHHHhhcCCh-hHHHHHHHHHHHHHhcC-CCchHHH
Q 046417          102 TVSCRLRDPDSSVRSACVAATTAMSLNITKPSFS----VLSKPLIELILVEQDV-NSQVGGAMCLAAAIDAA-PNPEVEQ  175 (595)
Q Consensus       102 ~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~~~~~~----~~l~PLi~aLl~d~nk-~VQ~~AA~cLaaviE~a-~d~~~~~  175 (595)
                      .+++.|..|+..|++.|+||||-+|.+...-...    ..+.||+..|. ..++ ..-.-+.-+|-.+|.+- +.+....
T Consensus       156 ~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~-~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~  234 (514)
T KOG0166|consen  156 IFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLN-KSDKLSMLRNATWTLSNLCRGKNPSPPFDV  234 (514)
T ss_pred             HHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhc-cccchHHHHHHHHHHHHHHcCCCCCCcHHH
Confidence            8999999999999999999999999765321111    28899999994 3443 34456788899999995 5555688


Q ss_pred             HHHHHHHHHHhhccCchhHHHHHHHHHHHHHHhhcccCcCcH-HhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhH
Q 046417          176 LRKLLPRLGKAVRIEGFKAKAAVLGVIGSVVRVGGARSKGVL-DWLVPCLVEFLCCDDWATRKAAAEVLGKVAVFDK  251 (595)
Q Consensus       176 L~~Ll~rL~klL~~~~~kaK~alLsAIgSlA~a~g~~~~~yl-~~lmp~L~e~L~~dDW~~RkaAaEaLgsIA~avg  251 (595)
                      +..++|-|.+++.+..-.+..-+.-||+-+.....+...-.+ ..++|.|+++|.+.+-.++-+|+-++|.|+++-.
T Consensus       235 v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d  311 (514)
T KOG0166|consen  235 VAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSD  311 (514)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccH
Confidence            999999999999999988776556666666543322211111 3478999999999998999999999999887654

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.33  E-value=6.1e-05  Score=83.19  Aligned_cols=176  Identities=16%  Similarity=0.251  Sum_probs=112.2

Q ss_pred             HHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccchhhHHHHHHHHHhhccCCChhHHHHHHHHHHHhhhhhcCCcch-
Q 046417           57 SFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPHLSKMISTVSCRLRDPDSSVRSACVAATTAMSLNITKPSFS-  135 (595)
Q Consensus        57 ~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~PhLpkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~~~~~~-  135 (595)
                      .++..+....++.+...||-+.+.+..+....++    .+.-++..+.+-|+++++.+|..|..+++.++..    ... 
T Consensus        42 ~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~~----~~~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~~~----~~~~  113 (526)
T PF01602_consen   42 FLFMEVIKLISSKDLELKRLGYLYLSLYLHEDPE----LLILIINSLQKDLNSPNPYIRGLALRTLSNIRTP----EMAE  113 (526)
T ss_dssp             STHHHHHCTCSSSSHHHHHHHHHHHHHHTTTSHH----HHHHHHHHHHHHHCSSSHHHHHHHHHHHHHH-SH----HHHH
T ss_pred             hHHHHHHHHhCCCCHHHHHHHHHHHHHHhhcchh----HHHHHHHHHHHhhcCCCHHHHHHHHhhhhhhccc----chhh
Confidence            3333444444456788888888888888888877    3334677788888888888888888888887742    111 


Q ss_pred             hccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCCCchHHHHHH-HHHHHHHhhccCchhHHHHHHHHHHHHHHhhcccCc
Q 046417          136 VLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNPEVEQLRK-LLPRLGKAVRIEGFKAKAAVLGVIGSVVRVGGARSK  214 (595)
Q Consensus       136 ~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d~~~~~L~~-Ll~rL~klL~~~~~kaK~alLsAIgSlA~a~g~~~~  214 (595)
                      .+++++...| .+++++|+..|+.|+..+....++.    ++. +.+.+.++|++++..+..+++.++..+ ......+.
T Consensus       114 ~l~~~v~~ll-~~~~~~VRk~A~~~l~~i~~~~p~~----~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i-~~~~~~~~  187 (526)
T PF01602_consen  114 PLIPDVIKLL-SDPSPYVRKKAALALLKIYRKDPDL----VEDELIPKLKQLLSDKDPSVVSAALSLLSEI-KCNDDSYK  187 (526)
T ss_dssp             HHHHHHHHHH-HSSSHHHHHHHHHHHHHHHHHCHCC----HHGGHHHHHHHHTTHSSHHHHHHHHHHHHHH-HCTHHHHT
T ss_pred             HHHHHHHHHh-cCCchHHHHHHHHHHHHHhccCHHH----HHHHHHHHHhhhccCCcchhHHHHHHHHHHH-ccCcchhh
Confidence            2444454444 6888888988998888888775553    333 677888888888877777777777766 11111112


Q ss_pred             CcHHhHHHHHHHhccC-CCHHHHHHHHHHHHHHH
Q 046417          215 GVLDWLVPCLVEFLCC-DDWATRKAAAEVLGKVA  247 (595)
Q Consensus       215 ~yl~~lmp~L~e~L~~-dDW~~RkaAaEaLgsIA  247 (595)
                      .++..++..|...+.. +.| .+..++.+|..++
T Consensus       188 ~~~~~~~~~L~~~l~~~~~~-~q~~il~~l~~~~  220 (526)
T PF01602_consen  188 SLIPKLIRILCQLLSDPDPW-LQIKILRLLRRYA  220 (526)
T ss_dssp             THHHHHHHHHHHHHTCCSHH-HHHHHHHHHTTST
T ss_pred             hhHHHHHHHhhhcccccchH-HHHHHHHHHHhcc
Confidence            4455555555555443 344 3444555555443

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells

Probab=98.32  E-value=0.00011  Score=82.40  Aligned_cols=229  Identities=18%  Similarity=0.243  Sum_probs=146.3

Q ss_pred             HHHHHH-HHHhhhcCCCChHHHHHHHHHHHHHhCCcCc-HHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccchhh
Q 046417           18 DLKQRV-ITCLNKLADRDTLPVATAELESIARTLTQDS-FSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPH   95 (595)
Q Consensus        18 ~lk~rv-l~~L~KL~DrDT~r~A~~~LD~lA~~L~~~~-lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~Ph   95 (595)
                      +++..+ +.||+. +++|....+...|+.+...+.+.. ++.+.+.|..-..++++.+|+-++..++.+++.... ...-
T Consensus        37 ~~~~~~lf~~L~~-~~~e~v~~~~~iL~~~l~~~~~~~l~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~-~~~~  114 (503)
T PF10508_consen   37 RLPEPVLFDCLNT-SNREQVELICDILKRLLSALSPDSLLPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEG-AAQL  114 (503)
T ss_pred             hchHHHHHHHHhh-cChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHH-HHHH
Confidence            444444 334442 366777778888999999887666 888888888888899999999999999998865533 2222


Q ss_pred             H--HHHHHHHHhhccCCChhHHHHHHHHHHHhhhhhcCCcchhc----cHHHHHHHhhcCChhHHHHHHHHHHHHHhcCC
Q 046417           96 L--SKMISTVSCRLRDPDSSVRSACVAATTAMSLNITKPSFSVL----SKPLIELILVEQDVNSQVGGAMCLAAAIDAAP  169 (595)
Q Consensus        96 L--pkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~~~~~~~~----l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~  169 (595)
                      +  ..+++.|+..|.|+|..|-.+|..+|..++.+-.  ....+    +.+-+..++...+..+.....-++..+... .
T Consensus       115 ~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~--~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~-S  191 (503)
T PF10508_consen  115 LVDNELLPLIIQCLRDPDLSVAKAAIKALKKLASHPE--GLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASH-S  191 (503)
T ss_pred             hcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCch--hHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhc-C
Confidence            2  5789999999999999999999999999997431  11111    122233333343544554433333333221 2


Q ss_pred             CchHHHHHH--HHHHHHHhhccCchhHHHHHHHHHHHHHHhh-cc-----------------------------------
Q 046417          170 NPEVEQLRK--LLPRLGKAVRIEGFKAKAAVLGVIGSVVRVG-GA-----------------------------------  211 (595)
Q Consensus       170 d~~~~~L~~--Ll~rL~klL~~~~~kaK~alLsAIgSlA~a~-g~-----------------------------------  211 (595)
                      +....+...  +++.+++.|++++.-+|..+++.+..+|..- |.                                   
T Consensus       192 ~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~  271 (503)
T PF10508_consen  192 PEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAETPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMK  271 (503)
T ss_pred             HHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHH
Confidence            222344443  6667777666666666666666666555410 00                                   


Q ss_pred             -----------cCcCcHHhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHh-H
Q 046417          212 -----------RSKGVLDWLVPCLVEFLCCDDWATRKAAAEVLGKVAVFD-K  251 (595)
Q Consensus       212 -----------~~~~yl~~lmp~L~e~L~~dDW~~RkaAaEaLgsIA~av-g  251 (595)
                                 .....++.++..|.+++.+.|-..+..|+|+||.|+... |
T Consensus       272 f~g~la~~~~~~v~~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~G  323 (503)
T PF10508_consen  272 FFGNLARVSPQEVLELYPAFLERLFSMLESQDPTIREVAFDTLGQIGSTVEG  323 (503)
T ss_pred             HHHHHHhcChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCHHH
Confidence                       001112334445555556788899999999999999765 5

26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding

>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]

Probab=98.28  E-value=3e-05  Score=86.22  Aligned_cols=198  Identities=17%  Similarity=0.102  Sum_probs=141.6

Q ss_pred             ChHHHHHHHHHHHHHHHHccccchhhHHHHHHHHHhhccCCChh------------HHHHHHHHHHHhhhhhcC-Ccc--
Q 046417           70 KSPVRKQCVNLLTLLSRSHGDSLSPHLSKMISTVSCRLRDPDSS------------VRSACVAATTAMSLNITK-PSF--  134 (595)
Q Consensus        70 kp~vRKaaI~lLG~lAEg~gd~I~PhLpkIL~~IvrrLkD~ds~------------VR~Ac~~aLg~LA~~l~~-~~~--  134 (595)
                      +...|-.+..+||++.+.|+|.+.+-+-.+..++.++|...=+.            |.+--..-+|-|...+.+ .+.  
T Consensus       513 e~n~R~s~fsaLgtli~~~~d~V~~~~a~~~~~~~~kl~~~isv~~q~l~~eD~~~~~elqSN~~~vl~aiir~~~~~ie  592 (858)
T COG5215         513 ESNLRVSLFSALGTLILICPDAVSDILAGFYDYTSKKLDECISVLGQILATEDQLLVEELQSNYIGVLEAIIRTRRRDIE  592 (858)
T ss_pred             chhHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence            46889999999999999999999999999999999888542111            111111112222222211 111  


Q ss_pred             -h-hccHHHHHHHhhcCChh-HHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHhhcc
Q 046417          135 -S-VLSKPLIELILVEQDVN-SQVGGAMCLAAAIDAAPNPEVEQLRKLLPRLGKAVRIEGFKAKAAVLGVIGSVVRVGGA  211 (595)
Q Consensus       135 -~-~~l~PLi~aLl~d~nk~-VQ~~AA~cLaaviE~a~d~~~~~L~~Ll~rL~klL~~~~~kaK~alLsAIgSlA~a~g~  211 (595)
                       + ..+.-||--++...++. +.....+|+.++--...+.-..|++++.|-|.+.|+...+.+-..+++.||-++.+-+.
T Consensus       593 ~v~D~lm~Lf~r~les~~~t~~~~dV~~aIsal~~sl~e~Fe~y~~~fiPyl~~aln~~d~~v~~~avglvgdlantl~~  672 (858)
T COG5215         593 DVEDQLMELFIRILESTKPTTAFGDVYTAISALSTSLEERFEQYASKFIPYLTRALNCTDRFVLNSAVGLVGDLANTLGT  672 (858)
T ss_pred             cHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcchhHHHHHHHHHHHHHHHHHhhh
Confidence             1 12333333333433332 44444444444444444455679999999999999888888888999999999999999


Q ss_pred             cCcCcHHhHHHHHHHhccCC--CHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHh
Q 046417          212 RSKGVLDWLVPCLVEFLCCD--DWATRKAAAEVLGKVAVFDKDLATEYKRSCLAALET  267 (595)
Q Consensus       212 ~~~~yl~~lmp~L~e~L~~d--DW~~RkaAaEaLgsIA~avge~f~py~~~~I~~Le~  267 (595)
                      .|.+|.+.+|..|.++|+++  +-.++-+.+-+.|-||.++|..|.+|.+.++-.|..
T Consensus       673 df~~y~d~~ms~LvQ~lss~~~~R~lKPaiLSvFgDIAlaiga~F~~YL~~im~L~qq  730 (858)
T COG5215         673 DFNIYADVLMSSLVQCLSSEATHRDLKPAILSVFGDIALAIGANFESYLDMIMMLFQQ  730 (858)
T ss_pred             hHHHHHHHHHHHHHHHhcChhhccccchHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence            99999999999999999865  555667778899999999999999999988877654

>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]

Probab=98.27  E-value=5e-05  Score=88.43  Aligned_cols=270  Identities=18%  Similarity=0.201  Sum_probs=191.6

Q ss_pred             hHHHHHHHHHhhhcCCCC---hHHHHHHHHHHHHHhCCcCc-HHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccc
Q 046417           17 NDLKQRVITCLNKLADRD---TLPVATAELESIARTLTQDS-FSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSL   92 (595)
Q Consensus        17 ~~lk~rvl~~L~KL~DrD---T~r~A~~~LD~lA~~L~~~~-lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I   92 (595)
                      ..+|..+.+....|-.+|   ..+.++.-|-.+|..++.+. ...+++-+.+-..++.-.||.+++..++.+.....+..
T Consensus       232 ~~vk~elr~~~~~lc~d~~~~Vr~~~a~~l~~~a~~~~~~~~~s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~~~~  311 (759)
T KOG0211|consen  232 DAVKRELRPIVQSLCQDDTPMVRRAVASNLGNIAKVLESEIVKSEVLPTLIQLLRDDQDSVREAAVESLVSLLDLLDDDD  311 (759)
T ss_pred             HHHHHHHHHHHHhhccccchhhHHHHHhhhHHHHHHHHHHHHHhhccHHHhhhhhcchhhHHHHHHHHHHHHHHhcCCch
Confidence            468888888999997666   56778888999999887533 44444444444444457899999999999998887554


Q ss_pred             hhhHHHHHHHHHhhccCCChhHHHHHHHHHHHhhhhhcCCc------------------------------chhcc----
Q 046417           93 SPHLSKMISTVSCRLRDPDSSVRSACVAATTAMSLNITKPS------------------------------FSVLS----  138 (595)
Q Consensus        93 ~PhLpkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~~~~------------------------------~~~~l----  138 (595)
                       +.-..+.+.+++...|+...||....+...-+...+....                              +.-++    
T Consensus       312 -d~~~~~~~~l~~~~~d~~~~v~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~  390 (759)
T KOG0211|consen  312 -DVVKSLTESLVQAVEDGSWRVSYMVADKFSELSSAVGPSATRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYLNASC  390 (759)
T ss_pred             -hhhhhhhHHHHHHhcChhHHHHHHHhhhhhhHHHHhccccCcccchhhHHHHhcchhhhhhHHhhcchHHHhhhcCccc
Confidence             7777888999999999999998887777655554443200                              00011    


Q ss_pred             ---------HHHHHHHhhcCChhHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHhh
Q 046417          139 ---------KPLIELILVEQDVNSQVGGAMCLAAAIDAAPNPEVEQLRKLLPRLGKAVRIEGFKAKAAVLGVIGSVVRVG  209 (595)
Q Consensus       139 ---------~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d~~~~~L~~Ll~rL~klL~~~~~kaK~alLsAIgSlA~a~  209 (595)
                               -|-+..+..+.+.+|-.+.|.-......-.+.  ...+..+.|-+...++.....++..+++.+..+-.+.
T Consensus       391 ~~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~k--~~ti~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~  468 (759)
T KOG0211|consen  391 YPNIPDSSILPEVQVLVLDNALHVRSALASVITGLSPILPK--ERTISELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVN  468 (759)
T ss_pred             ccccchhhhhHHHHHHHhcccchHHHHHhccccccCccCCc--CcCccccChhhhhhcchhhHHHHHhhHHHHHHHHhcc
Confidence                     25555554455555443333322111111110  1244567777888888888888888887775555543


Q ss_pred             ccc-CcCcHHhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhH-HhHHH-HHHHHHHHHHhccCCchHHHHHHHHHHHHH
Q 046417          210 GAR-SKGVLDWLVPCLVEFLCCDDWATRKAAAEVLGKVAVFDK-DLATE-YKRSCLAALETRRFDKVKIVRETMNRSLEM  286 (595)
Q Consensus       210 g~~-~~~yl~~lmp~L~e~L~~dDW~~RkaAaEaLgsIA~avg-e~f~p-y~~~~I~~Le~crfDKVK~VRda~~~aL~~  286 (595)
                      +.. ...+-+.++|.|.+.-.+..|+.|.+.++.+..+|...| ++|.+ |.+.|+.+|.    |+|..||+++...+..
T Consensus       469 ~v~g~~~~s~slLp~i~el~~d~~wRvr~ail~~ip~la~q~~~~~~~~~~~~l~~~~l~----d~v~~Ir~~aa~~l~~  544 (759)
T KOG0211|consen  469 DVIGISTVSNSLLPAIVELAEDLLWRVRLAILEYIPQLALQLGVEFFDEKLAELLRTWLP----DHVYSIREAAARNLPA  544 (759)
T ss_pred             CcccchhhhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHhhhhHHhhHHHHHHHHhhhh----hhHHHHHHHHHHHhHH
Confidence            322 235668899999999988899999999999999999998 66666 5678888888    8899999999999999


Q ss_pred             hHhcCCC
Q 046417          287 WKEVPGV  293 (595)
Q Consensus       287 ~K~i~~~  293 (595)
                      .-...|.
T Consensus       545 l~~~~G~  551 (759)
T KOG0211|consen  545 LVETFGS  551 (759)
T ss_pred             HHHHhCc
Confidence            9999883

>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]

Probab=98.23  E-value=4.5e-05  Score=88.60  Aligned_cols=221  Identities=20%  Similarity=0.228  Sum_probs=151.5

Q ss_pred             hHHHHHHHHHhhhcCCCChHHHHHHHHHHHHH-hCCcCcHHHHHHhhhhcCCCCChHHHHHHH--HHHHHHHHHccccch
Q 046417           17 NDLKQRVITCLNKLADRDTLPVATAELESIAR-TLTQDSFSSFLNCLQTTDSSSKSPVRKQCV--NLLTLLSRSHGDSLS   93 (595)
Q Consensus        17 ~~lk~rvl~~L~KL~DrDT~r~A~~~LD~lA~-~L~~~~lp~fL~~L~d~~ss~kp~vRKaaI--~lLG~lAEg~gd~I~   93 (595)
                      .+++.-++.+|+--+. |-...|..+|-.++- +| +.-+|.+|.++..    +  +.|++-+  .+..++...-.+.+.
T Consensus       856 ~e~~~~iieaf~sp~e-dvksAAs~ALGsl~vgnl-~~yLpfil~qi~s----q--pk~QyLLLhSlkevi~~~svd~~~  927 (1233)
T KOG1824|consen  856 NELKDTIIEAFNSPSE-DVKSAASYALGSLAVGNL-PKYLPFILEQIES----Q--PKRQYLLLHSLKEVIVSASVDGLK  927 (1233)
T ss_pred             hhhHHHHHHHcCCChH-HHHHHHHHHhhhhhcCch-HhHHHHHHHHHhc----c--hHhHHHHHHHHHHHHHHhccchhh
Confidence            5788877777776544 666777777777766 33 3334444444432    1  3333332  244566666678889


Q ss_pred             hhHHHHHHHHHhhccCCChhHHHHHHHHHHHhhhhhcCCcchhccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCCCchH
Q 046417           94 PHLSKMISTVSCRLRDPDSSVRSACVAATTAMSLNITKPSFSVLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNPEV  173 (595)
Q Consensus        94 PhLpkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~~~~~~~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d~~~  173 (595)
                      |+.++||..+.+...-.+-.+|...+++||.|+-.=   |  ..+-|=++.++....++.-..+..|+.=.|-.-+.++.
T Consensus       928 ~~v~~IW~lL~k~cE~~eegtR~vvAECLGkL~l~e---p--esLlpkL~~~~~S~a~~~rs~vvsavKfsisd~p~~id 1002 (1233)
T KOG1824|consen  928 PYVEKIWALLFKHCECAEEGTRNVVAECLGKLVLIE---P--ESLLPKLKLLLRSEASNTRSSVVSAVKFSISDQPQPID 1002 (1233)
T ss_pred             hhHHHHHHHHHHhcccchhhhHHHHHHHhhhHHhCC---h--HHHHHHHHHHhcCCCcchhhhhhheeeeeecCCCCccC
Confidence            999999999999999899999999999999998532   2  23445444444555555444444433333333355556


Q ss_pred             HHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHhhcccCcCcHHhHHHHHHHhc------------------cCCCHHH
Q 046417          174 EQLRKLLPRLGKAVRIEGFKAKAAVLGVIGSVVRVGGARSKGVLDWLVPCLVEFL------------------CCDDWAT  235 (595)
Q Consensus       174 ~~L~~Ll~rL~klL~~~~~kaK~alLsAIgSlA~a~g~~~~~yl~~lmp~L~e~L------------------~~dDW~~  235 (595)
                      +|+.+-...|+++++++..+++..++.++.|+|.--...-...++.++|.|-+--                  .|+-...
T Consensus      1003 ~~lk~~ig~fl~~~~dpDl~VrrvaLvv~nSaahNKpslIrDllpeLLp~Ly~eTkvrkelIreVeMGPFKH~VDdgLd~ 1082 (1233)
T KOG1824|consen 1003 PLLKQQIGDFLKLLRDPDLEVRRVALVVLNSAAHNKPSLIRDLLPELLPLLYSETKVRKELIREVEMGPFKHTVDDGLDL 1082 (1233)
T ss_pred             HHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHccCHhHHHHHHHHHHHHHHHhhhhhHhhhhhhcccCccccccchHHH
Confidence            8999999999999999999999999999998885322222345666777764431                  2677899


Q ss_pred             HHHHHHHHHHHHHHh
Q 046417          236 RKAAAEVLGKVAVFD  250 (595)
Q Consensus       236 RkaAaEaLgsIA~av  250 (595)
                      ||+|+|||+++-..+
T Consensus      1083 RKaaFEcmytLLdsc 1097 (1233)
T KOG1824|consen 1083 RKAAFECMYTLLDSC 1097 (1233)
T ss_pred             HHHHHHHHHHHHHhh
Confidence            999999999998866

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells

Probab=98.22  E-value=0.00016  Score=81.23  Aligned_cols=218  Identities=16%  Similarity=0.178  Sum_probs=147.0

Q ss_pred             HHHHHHHHHhhhcCCCChHHHHHHHHHHHHHhCC-cCc--HHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHcc-ccch
Q 046417           18 DLKQRVITCLNKLADRDTLPVATAELESIARTLT-QDS--FSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHG-DSLS   93 (595)
Q Consensus        18 ~lk~rvl~~L~KL~DrDT~r~A~~~LD~lA~~L~-~~~--lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~g-d~I~   93 (595)
                      +|.+..|..|..   .+..--++.+|..-...-+ -+.  .+.++.|+.+.    +...=..++..|..+-+... +.+ 
T Consensus         3 ~~~~~~l~~l~~---~~~~~~~L~~l~~~~~~~~~l~~~~~~~lf~~L~~~----~~e~v~~~~~iL~~~l~~~~~~~l-   74 (503)
T PF10508_consen    3 EWINELLEELSS---KAERLEALPELKTELSSSPFLERLPEPVLFDCLNTS----NREQVELICDILKRLLSALSPDSL-   74 (503)
T ss_pred             hHHHHHHHHHhc---ccchHHHHHHHHHHHhhhhHHHhchHHHHHHHHhhc----ChHHHHHHHHHHHHHHhccCHHHH-
Confidence            455555554444   3555556666666444433 122  34567777653    34444556666665555442 333 


Q ss_pred             hhHHHHHHHHHhhccCCChhHHHHHHHHHHHhhhhhcCC-c-c--hhccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCC
Q 046417           94 PHLSKMISTVSCRLRDPDSSVRSACVAATTAMSLNITKP-S-F--SVLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAP  169 (595)
Q Consensus        94 PhLpkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~~~-~-~--~~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~  169 (595)
                        ++++.+++.+.|..|++.||.-|+++|++++++-... . .  ..++..++..| .+.+..|...|+.+|..+.....
T Consensus        75 --~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L-~~~d~~Va~~A~~~L~~l~~~~~  151 (503)
T PF10508_consen   75 --LPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCL-RDPDLSVAKAAIKALKKLASHPE  151 (503)
T ss_pred             --HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHH-cCCcHHHHHHHHHHHHHHhCCch
Confidence              7799999999999999999999999999998643210 0 0  12555566666 78888899999999999886421


Q ss_pred             CchHHHH-HHHHHHHHHhhccCchhHHHHHHHHHHHHHHhhcccCcCcHH--hHHHHHHHhccCCCHHHHHHHHHHHHHH
Q 046417          170 NPEVEQL-RKLLPRLGKAVRIEGFKAKAAVLGVIGSVVRVGGARSKGVLD--WLVPCLVEFLCCDDWATRKAAAEVLGKV  246 (595)
Q Consensus       170 d~~~~~L-~~Ll~rL~klL~~~~~kaK~alLsAIgSlA~a~g~~~~~yl~--~lmp~L~e~L~~dDW~~RkaAaEaLgsI  246 (595)
                      . ....+ ..+...|..++..++-.+|--+++++..++......+ .+..  .+++.|...+.++|--++..++|+|+.+
T Consensus       152 ~-~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~-~~~~~sgll~~ll~eL~~dDiLvqlnalell~~L  229 (503)
T PF10508_consen  152 G-LEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAA-EAVVNSGLLDLLLKELDSDDILVQLNALELLSEL  229 (503)
T ss_pred             h-HHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHH-HHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHH
Confidence            1 11111 1237888888877555566678888888876654442 3333  3888999999999999999999999999


Q ss_pred             HH
Q 046417          247 AV  248 (595)
Q Consensus       247 A~  248 (595)
                      |.
T Consensus       230 a~  231 (503)
T PF10508_consen  230 AE  231 (503)
T ss_pred             Hc
Confidence            98

26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding

>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]

Probab=98.17  E-value=5.3e-05  Score=86.21  Aligned_cols=246  Identities=15%  Similarity=0.187  Sum_probs=181.3

Q ss_pred             ChHHHHHHHHHHHHHhCC------c--CcHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccchh-hHHHHHHHHH
Q 046417           34 DTLPVATAELESIARTLT------Q--DSFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSP-HLSKMISTVS  104 (595)
Q Consensus        34 DT~r~A~~~LD~lA~~L~------~--~~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~P-hLpkIL~~Iv  104 (595)
                      ++.-.-+.+|..|....+      |  +.||.+.+.|....    -.+.+.||.++|.||.--++++.+ .+-+|.=-++
T Consensus       856 EvLgsILgAikaI~nvigm~km~pPi~dllPrltPILknrh----eKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLl  931 (1172)
T KOG0213|consen  856 EVLGSILGAIKAIVNVIGMTKMTPPIKDLLPRLTPILKNRH----EKVQENCIDLVGTIADRGPEYVSAREWMRICFELL  931 (1172)
T ss_pred             HHHHHHHHHHHHHHHhccccccCCChhhhcccchHhhhhhH----HHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHH
Confidence            366667888888888762      2  23677777776532    468889999999999999999944 5667777788


Q ss_pred             hhccCCChhHHHHHHHHHHHhhhhhcCCcchhccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHH
Q 046417          105 CRLRDPDSSVRSACVAATTAMSLNITKPSFSVLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNPEVEQLRKLLPRLG  184 (595)
Q Consensus       105 rrLkD~ds~VR~Ac~~aLg~LA~~l~~~~~~~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d~~~~~L~~Ll~rL~  184 (595)
                      ..|+...-.+|.|+..++|-+|..+.  |.. .|.-|+..| .-++.....+...|++-+-|....      -.++|.|+
T Consensus       932 elLkahkK~iRRaa~nTfG~IakaIG--Pqd-VLatLlnnL-kvqeRq~RvcTtvaIaIVaE~c~p------FtVLPalm 1001 (1172)
T KOG0213|consen  932 ELLKAHKKEIRRAAVNTFGYIAKAIG--PQD-VLATLLNNL-KVQERQNRVCTTVAIAIVAETCGP------FTVLPALM 1001 (1172)
T ss_pred             HHHHHHHHHHHHHHHhhhhHHHHhcC--HHH-HHHHHHhcc-hHHHHHhchhhhhhhhhhhhhcCc------hhhhHHHH
Confidence            88999999999999999999999874  322 344444554 223333334556666666666533      24667766


Q ss_pred             HhhccCchhHHHHHHHHHHHHHHhhcccCcCcHHhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHh-HHhHHHHHHHHHH
Q 046417          185 KAVRIEGFKAKAAVLGVIGSVVRVGGARSKGVLDWLVPCLVEFLCCDDWATRKAAAEVLGKVAVFD-KDLATEYKRSCLA  263 (595)
Q Consensus       185 klL~~~~~kaK~alLsAIgSlA~a~g~~~~~yl~~lmp~L~e~L~~dDW~~RkaAaEaLgsIA~av-ge~f~py~~~~I~  263 (595)
                      .--..+...+++.+|-++.=+++-.|+....|+-.+.|.|.+.|.|.|..-|--|+.++.+|+..+ |-+-..-+-..++
T Consensus      1002 neYrtPe~nVQnGVLkalsf~FeyigemskdYiyav~PlleDAlmDrD~vhRqta~~~I~Hl~Lg~~g~g~eda~iHLLN 1081 (1172)
T KOG0213|consen 1002 NEYRTPEANVQNGVLKALSFMFEYIGEMSKDYIYAVTPLLEDALMDRDLVHRQTAMNVIKHLALGVPGTGCEDALIHLLN 1081 (1172)
T ss_pred             hhccCchhHHHHhHHHHHHHHHHHHHHHhhhHHHHhhHHHHHhhccccHHHHHHHHHHHHHHhcCCCCcCcHHHHHHHHH
Confidence            667788888999999999999998887778999999999999999999999999999999999865 2221112223444


Q ss_pred             HHHhccCCchHHHHHHHHHHHHHhHhcCCC
Q 046417          264 ALETRRFDKVKIVRETMNRSLEMWKEVPGV  293 (595)
Q Consensus       264 ~Le~crfDKVK~VRda~~~aL~~~K~i~~~  293 (595)
                      .+=--=||-.++|-.++.++++.+...-|.
T Consensus      1082 ~iWpNIle~sPhviqa~~e~~eg~r~~Lg~ 1111 (1172)
T KOG0213|consen 1082 LIWPNILETSPHVIQAFDEAMEGLRVALGP 1111 (1172)
T ss_pred             HhhhhhcCCChHHHHHHHHHHHHHHHHhch
Confidence            444445677889988888888887765543

>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins

Probab=98.13  E-value=0.00017  Score=78.89  Aligned_cols=209  Identities=17%  Similarity=0.203  Sum_probs=158.7

Q ss_pred             ChhHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHhCCcCc-HHHHHHhhhhcC-CCCChHHHHHHHHHHHHHHHHccccc
Q 046417           15 STNDLKQRVITCLNKLADRDTLPVATAELESIARTLTQDS-FSSFLNCLQTTD-SSSKSPVRKQCVNLLTLLSRSHGDSL   92 (595)
Q Consensus        15 ~~~~lk~rvl~~L~KL~DrDT~r~A~~~LD~lA~~L~~~~-lp~fL~~L~d~~-ss~kp~vRKaaI~lLG~lAEg~gd~I   92 (595)
                      ..+++.++++.....-.|..++..+++.|-.+++.++.+. +..+|..+.... ....+..|..++..+.-++.|--=.-
T Consensus       186 ~~~~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~  265 (415)
T PF12460_consen  186 DLEELLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDDDLDEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRG  265 (415)
T ss_pred             CHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChhhHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcC
Confidence            5567888999888888887788889999999999997655 888888887766 45567899999999977777764333


Q ss_pred             hhhHHHHHHHHHhhccCCChhHHHHHHHHHHHhhhhhcC----C-----------cc-hhccHHHHHHHhhcCChhHHHH
Q 046417           93 SPHLSKMISTVSCRLRDPDSSVRSACVAATTAMSLNITK----P-----------SF-SVLSKPLIELILVEQDVNSQVG  156 (595)
Q Consensus        93 ~PhLpkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~~----~-----------~~-~~~l~PLi~aLl~d~nk~VQ~~  156 (595)
                      .|.-.+++..++..|.|  +.+...++.+++.+.....+    .           .+ ...+++|++.. .+.+...+..
T Consensus       266 ~~~~~~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~-~~~~~~~k~~  342 (415)
T PF12460_consen  266 HPLATELLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGF-KEADDEIKSN  342 (415)
T ss_pred             CchHHHHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHH-hhcChhhHHH
Confidence            45666778888888877  66888888898888865311    1           11 12455555555 3333335556


Q ss_pred             HHHHHHHHHhcCCCch-HHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHhhcccCcCcHHhHHHHHHH
Q 046417          157 GAMCLAAAIDAAPNPE-VEQLRKLLPRLGKAVRIEGFKAKAAVLGVIGSVVRVGGARSKGVLDWLVPCLVE  226 (595)
Q Consensus       157 AA~cLaaviE~a~d~~-~~~L~~Ll~rL~klL~~~~~kaK~alLsAIgSlA~a~g~~~~~yl~~lmp~L~e  226 (595)
                      --.||..++.+.+..+ .+++++|+|-+++.|+.++..++.+.|.++-.+..-......+|+..++|.|..
T Consensus       343 yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~~~~i~~hl~sLI~~LL~  413 (415)
T PF12460_consen  343 YLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEAPELISEHLSSLIPRLLK  413 (415)
T ss_pred             HHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHh
Confidence            6778999999988666 689999999999999999888888888888888875555567889999998875

MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A

Probab=98.10  E-value=2.3e-05  Score=65.84  Aligned_cols=88  Identities=24%  Similarity=0.240  Sum_probs=67.7

Q ss_pred             HHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccchhhHHHHHHHHHhhccCCChhHHHHHHHHHHHhhhhhcCCcc
Q 046417           55 FSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPHLSKMISTVSCRLRDPDSSVRSACVAATTAMSLNITKPSF  134 (595)
Q Consensus        55 lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~PhLpkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~~~~~  134 (595)
                      |+.++..|..   +.++.+|..++.+||.+          .-++.++.++..++|+++.||.+++++||.+...      
T Consensus         1 i~~L~~~l~~---~~~~~vr~~a~~~L~~~----------~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~~~------   61 (88)
T PF13646_consen    1 IPALLQLLQN---DPDPQVRAEAARALGEL----------GDPEAIPALIELLKDEDPMVRRAAARALGRIGDP------   61 (88)
T ss_dssp             HHHHHHHHHT---SSSHHHHHHHHHHHHCC----------THHHHHHHHHHHHTSSSHHHHHHHHHHHHCCHHH------
T ss_pred             CHHHHHHHhc---CCCHHHHHHHHHHHHHc----------CCHhHHHHHHHHHcCCCHHHHHHHHHHHHHhCCH------
Confidence            4566666643   46799999999999922          1237788999999999999999999999998742      


Q ss_pred             hhccHHHHHHHhhcCChhHHHHHHHHHH
Q 046417          135 SVLSKPLIELILVEQDVNSQVGGAMCLA  162 (595)
Q Consensus       135 ~~~l~PLi~aLl~d~nk~VQ~~AA~cLa  162 (595)
                       ..+..|...|..+.+..++..|+.+|+
T Consensus        62 -~~~~~L~~~l~~~~~~~vr~~a~~aL~   88 (88)
T PF13646_consen   62 -EAIPALIKLLQDDDDEVVREAAAEALG   88 (88)
T ss_dssp             -HTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence             256677888855667778888888774

>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]

Probab=98.09  E-value=0.00034  Score=81.63  Aligned_cols=248  Identities=17%  Similarity=0.226  Sum_probs=183.4

Q ss_pred             HHHHHHHHHHhCCc--------CcHHHHHHhhhhcCCC--CChHHHHHHHHHHHHHHHHccccchhhHHHHHHHHHhhcc
Q 046417           39 ATAELESIARTLTQ--------DSFSSFLNCLQTTDSS--SKSPVRKQCVNLLTLLSRSHGDSLSPHLSKMISTVSCRLR  108 (595)
Q Consensus        39 A~~~LD~lA~~L~~--------~~lp~fL~~L~d~~ss--~kp~vRKaaI~lLG~lAEg~gd~I~PhLpkIL~~IvrrLk  108 (595)
                      +.=.|.....+++|        ..++.|++.+.+++..  +...+|=+++-.++.+-.-+|+.+-++=..|+-+++..|.
T Consensus       105 ssi~Lktvi~nl~P~~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr~g~ll~~fh~~il~~l~~ql~  184 (1233)
T KOG1824|consen  105 SSIGLKTVIANLPPSSSSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSRFGTLLPNFHLSILKCLLPQLQ  184 (1233)
T ss_pred             HHHHHHHHHhcCCCccccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhhcccCcchHHHHHHHHhhccc
Confidence            44445555666653        4588899999888654  3457999999999999999999999988899999999999


Q ss_pred             CCChhHHHHHHHHHHHhhhhhcCCcchhccHHHHHHHhh---cCChhHH-HHHHHHHHHHHhcCCCchHHHHHHHHHHHH
Q 046417          109 DPDSSVRSACVAATTAMSLNITKPSFSVLSKPLIELILV---EQDVNSQ-VGGAMCLAAAIDAAPNPEVEQLRKLLPRLG  184 (595)
Q Consensus       109 D~ds~VR~Ac~~aLg~LA~~l~~~~~~~~l~PLi~aLl~---d~nk~VQ-~~AA~cLaaviE~a~d~~~~~L~~Ll~rL~  184 (595)
                      -+...||.=++.+||.++..+.+.    .+.-+++.|+.   ...+..+ -.-.-||++++-.++.....++.+++|-+.
T Consensus       185 s~R~aVrKkai~~l~~la~~~~~~----ly~~li~~Ll~~L~~~~q~~~~rt~Iq~l~~i~r~ag~r~~~h~~~ivp~v~  260 (1233)
T KOG1824|consen  185 SPRLAVRKKAITALGHLASSCNRD----LYVELIEHLLKGLSNRTQMSATRTYIQCLAAICRQAGHRFGSHLDKIVPLVA  260 (1233)
T ss_pred             ChHHHHHHHHHHHHHHHHHhcCHH----HHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHhcchhhcccchhhHHHH
Confidence            999999999999999999988532    33445555543   2222222 345667888888888777778899999999


Q ss_pred             Hhh---ccCchhHHHHHHHHHHHHHHhhcccCcCcHHhHHHHHHHhcc----------------------CC--------
Q 046417          185 KAV---RIEGFKAKAAVLGVIGSVVRVGGARSKGVLDWLVPCLVEFLC----------------------CD--------  231 (595)
Q Consensus       185 klL---~~~~~kaK~alLsAIgSlA~a~g~~~~~yl~~lmp~L~e~L~----------------------~d--------  231 (595)
                      .+.   +.+.-..+...|.+++++..-......||.+.++..+.++++                      |+        
T Consensus       261 ~y~~~~e~~dDELrE~~lQale~fl~rcp~ei~p~~pei~~l~l~yisYDPNy~yd~~eDed~~~~ed~eDde~~deYsD  340 (1233)
T KOG1824|consen  261 DYCNKIEEDDDELREYCLQALESFLRRCPKEILPHVPEIINLCLSYISYDPNYNYDTEEDEDAMFLEDEEDDEQDDEYSD  340 (1233)
T ss_pred             HHhcccccCcHHHHHHHHHHHHHHHHhChhhhcccchHHHHHHHHHhccCCCCCCCCccchhhhhhhccccchhcccccc
Confidence            888   667778999999999999886666667888888888888762                      00        


Q ss_pred             ----CHHHHHHHHHHHHHHHHHhHHhHHHHH----HHHHHHHHhccCCchHHHHHHHHHH-HHHhHhcCCCC
Q 046417          232 ----DWATRKAAAEVLGKVAVFDKDLATEYK----RSCLAALETRRFDKVKIVRETMNRS-LEMWKEVPGVC  294 (595)
Q Consensus       232 ----DW~~RkaAaEaLgsIA~avge~f~py~----~~~I~~Le~crfDKVK~VRda~~~a-L~~~K~i~~~~  294 (595)
                          .|-+|.+|+-||.++-..-.+.+..+.    +..|.-|.    |+---|+--+.++ ++++++++..-
T Consensus       341 DeD~SWkVRRaAaKcl~a~IsSR~E~L~~~~q~l~p~lI~Rfk----EREEnVk~dvf~~yi~ll~qt~~~~  408 (1233)
T KOG1824|consen  341 DEDMSWKVRRAAAKCLEAVISSRLEMLPDFYQTLGPALISRFK----EREENVKADVFHAYIALLKQTRPVI  408 (1233)
T ss_pred             ccchhHHHHHHHHHHHHHHHhccHHHHHHHHHHhCHHHHHHHH----HHhhhHHHHHHHHHHHHHHcCCCCc
Confidence                399999999999998775555444443    44444454    4456666555554 57778776553

>cd00020 ARM Armadillo/beta-catenin-like repeats

Probab=97.97  E-value=2.1e-05  Score=68.54  Aligned_cols=109  Identities=14%  Similarity=0.179  Sum_probs=83.5

Q ss_pred             CcHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccchhhHH-HHHHHHHhhccCCChhHHHHHHHHHHHhhhhhcC
Q 046417           53 DSFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPHLS-KMISTVSCRLRDPDSSVRSACVAATTAMSLNITK  131 (595)
Q Consensus        53 ~~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~PhLp-kIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~~  131 (595)
                      ..++.++..+.+.    ++..|+.++.+|+.++....+.....+. .+++.+++.|.|+++.|+..|+++|+.|+.....
T Consensus         7 ~~i~~l~~~l~~~----~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~   82 (120)
T cd00020           7 GGLPALVSLLSSS----DENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPED   82 (120)
T ss_pred             CChHHHHHHHHcC----CHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHH
Confidence            3578888888753    4899999999999999876555544555 8899999999999999999999999999975421


Q ss_pred             Ccc--h-h-ccHHHHHHHhhcCChhHHHHHHHHHHHHHh
Q 046417          132 PSF--S-V-LSKPLIELILVEQDVNSQVGGAMCLAAAID  166 (595)
Q Consensus       132 ~~~--~-~-~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE  166 (595)
                      ...  . . +++-|+..| .+.+..++..|+.+|..++|
T Consensus        83 ~~~~~~~~g~l~~l~~~l-~~~~~~~~~~a~~~l~~l~~  120 (120)
T cd00020          83 NKLIVLEAGGVPKLVNLL-DSSNEDIQKNATGALSNLAS  120 (120)
T ss_pred             HHHHHHHCCChHHHHHHH-hcCCHHHHHHHHHHHHHhhC
Confidence            111  1 1 455666666 66678899999999988764

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.

>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]

Probab=97.97  E-value=0.00038  Score=81.84  Aligned_cols=201  Identities=18%  Similarity=0.182  Sum_probs=161.3

Q ss_pred             CcHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHcc-ccchhhHHHHHHHHHhhccCCChhHHHHHHHHHHHhhhhhcC
Q 046417           53 DSFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHG-DSLSPHLSKMISTVSCRLRDPDSSVRSACVAATTAMSLNITK  131 (595)
Q Consensus        53 ~~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~g-d~I~PhLpkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~~  131 (595)
                      +.++-+-..+.....+.+|..|++++..|..+.+.-. +....+...+...+--+++|.+..|..-++..|..||.-+-.
T Consensus       249 di~~ki~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~  328 (815)
T KOG1820|consen  249 DILSKITKNLETEMLSKKWKDRKEALEELVAILEEAKKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRP  328 (815)
T ss_pred             hhhhhcChHHHHhhhccchHHHHHHHHHHHHHHhccccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcch
Confidence            3366666677777788899999999999999888887 677888888888888999999999999898899999977643


Q ss_pred             C--cch-hccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHh
Q 046417          132 P--SFS-VLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNPEVEQLRKLLPRLGKAVRIEGFKAKAAVLGVIGSVVRV  208 (595)
Q Consensus       132 ~--~~~-~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d~~~~~L~~Ll~rL~klL~~~~~kaK~alLsAIgSlA~a  208 (595)
                      .  ++. ..++.|++.+ ++....+-..+--|+.++++..      -|.++.+-++.++++.+-++|..+...+.-....
T Consensus       329 ~~~~~~~~v~p~lld~l-kekk~~l~d~l~~~~d~~~ns~------~l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~  401 (815)
T KOG1820|consen  329 LFRKYAKNVFPSLLDRL-KEKKSELRDALLKALDAILNST------PLSKMSEAILEALKGKNPQIKGECLLLLDRKLRK  401 (815)
T ss_pred             hhHHHHHhhcchHHHHh-hhccHHHHHHHHHHHHHHHhcc------cHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhh
Confidence            2  222 2777888888 6778888888888889988832      5678888889999999999998877777666654


Q ss_pred             hc-c-cCcCcHHhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhHH-hHHHHHHH
Q 046417          209 GG-A-RSKGVLDWLVPCLVEFLCCDDWATRKAAAEVLGKVAVFDKD-LATEYKRS  260 (595)
Q Consensus       209 ~g-~-~~~~yl~~lmp~L~e~L~~dDW~~RkaAaEaLgsIA~avge-~f~py~~~  260 (595)
                      .+ . .+..-+..++|.+.....|.+=.+|++|.++++.|..++|+ .|..|...
T Consensus       402 ~~~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~Ge~~~~k~L~~  456 (815)
T KOG1820|consen  402 LGPKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKVHGEEVFKKLLKD  456 (815)
T ss_pred             cCCcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence            44 2 24566788999999999999999999999999999999995 66655543

>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.95  E-value=0.00093  Score=78.50  Aligned_cols=209  Identities=12%  Similarity=0.099  Sum_probs=142.2

Q ss_pred             HHHHHHHHHHhCCcCcHHHHHHhhhhcC--------CCCChHHHHHHHHHHHHHHHHccc--cchhhHHHH-HHHHHhhc
Q 046417           39 ATAELESIARTLTQDSFSSFLNCLQTTD--------SSSKSPVRKQCVNLLTLLSRSHGD--SLSPHLSKM-ISTVSCRL  107 (595)
Q Consensus        39 A~~~LD~lA~~L~~~~lp~fL~~L~d~~--------ss~kp~vRKaaI~lLG~lAEg~gd--~I~PhLpkI-L~~IvrrL  107 (595)
                      |+.-|-.++..=..+.++.+|+.+.+.+        ...+++.+..|++.+|.+++.-.+  .....|..+ +++|...+
T Consensus       392 a~~~l~~~~~KR~ke~l~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVfP~f  471 (1010)
T KOG1991|consen  392 ALDFLTTLVSKRGKETLPKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVFPEF  471 (1010)
T ss_pred             HHHHHHHHHHhcchhhhhhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhhHhh
Confidence            3344455666655666776666655543        234578999999999999987752  224667766 67888999


Q ss_pred             cCCChhHHHHHHHHHHHhhhh-hcCCcc-hhccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCCC---chHHHHHHHHHH
Q 046417          108 RDPDSSVRSACVAATTAMSLN-ITKPSF-SVLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPN---PEVEQLRKLLPR  182 (595)
Q Consensus       108 kD~ds~VR~Ac~~aLg~LA~~-l~~~~~-~~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d---~~~~~L~~Ll~r  182 (595)
                      ++|--..|.-+||.++++++. ..++.. ...+.-....|.++++-.|++-||.||..+|.+...   .+-+.++.+|..
T Consensus       472 ~s~~g~Lrarac~vl~~~~~~df~d~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~  551 (1010)
T KOG1991|consen  472 QSPYGYLRARACWVLSQFSSIDFKDPNNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQE  551 (1010)
T ss_pred             cCchhHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHH
Confidence            999999999999999999943 433221 125666667776678888999999999999999543   356888999999


Q ss_pred             HHHhhccCchhHHHHHHHHHHHHHHhhcccCcCcHHhHHHHHHHhc----c------CCCHHHHHHHHHHHHHHHHHh
Q 046417          183 LGKAVRIEGFKAKAAVLGVIGSVVRVGGARSKGVLDWLVPCLVEFL----C------CDDWATRKAAAEVLGKVAVFD  250 (595)
Q Consensus       183 L~klL~~~~~kaK~alLsAIgSlA~a~g~~~~~yl~~lmp~L~e~L----~------~dDW~~RkaAaEaLgsIA~av  250 (595)
                      |+++.+.-.-.   .+-.++-+++.--++...||...++..|.+..    .      +.+-..-.+|.-+|.+|-+.+
T Consensus       552 lL~L~ne~End---~Lt~vme~iV~~fseElsPfA~eL~q~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~Ti~Til  626 (1010)
T KOG1991|consen  552 LLKLSNEVEND---DLTNVMEKIVCKFSEELSPFAVELCQNLAETFLKVLQTSEDEDESDDDKAIAASGILRTISTIL  626 (1010)
T ss_pred             HHHHHHhcchh---HHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHhccCCCCccchHHHHHHHHHHHHHHHHH
Confidence            99998543322   23345555554333444677777777776542    2      123344566777777776644

>KOG2259 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.87  E-value=0.00031  Score=79.47  Aligned_cols=216  Identities=21%  Similarity=0.172  Sum_probs=142.3

Q ss_pred             HHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccchhhHHH-HHHHHHhhccCCChhHHHHHHHHHHHhhhhhcCC--c
Q 046417           57 SFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPHLSK-MISTVSCRLRDPDSSVRSACVAATTAMSLNITKP--S  133 (595)
Q Consensus        57 ~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~PhLpk-IL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~~~--~  133 (595)
                      ....+|.....+.++.+|.+|+..|=.+.||+.      |++ +....++.++|.+..||.|++..+.-++..+.-+  .
T Consensus       198 ~~~~~l~~~~~~~D~~Vrt~A~eglL~L~eg~k------L~~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~  271 (823)
T KOG2259|consen  198 HAARGLIYLEHDQDFRVRTHAVEGLLALSEGFK------LSKACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLER  271 (823)
T ss_pred             HHHHHHHHHhcCCCcchHHHHHHHHHhhccccc------ccHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccc
Confidence            455556666677788999999998888888553      222 3566778888999999999987777776555211  0


Q ss_pred             c------h-hccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCCCchHHHHHH-H--------------------------
Q 046417          134 F------S-VLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNPEVEQLRK-L--------------------------  179 (595)
Q Consensus       134 ~------~-~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d~~~~~L~~-L--------------------------  179 (595)
                      +      . ..|.-+..++ .|-.-.|-.-||-+|-.+.....+.+...|.+ +                          
T Consensus       272 e~~e~kl~D~aF~~vC~~v-~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~ahkrpk~l~s~GewSsG  350 (823)
T KOG2259|consen  272 ESEEEKLKDAAFSSVCRAV-RDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRTAHKRPKALYSSGEWSSG  350 (823)
T ss_pred             hhhhhhhHHHHHHHHHHHH-hcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhhcccchHHHHhcCCcccC
Confidence            0      0 1344455555 33332232333333333322222222223321 3                          


Q ss_pred             ------------------------HHHHHHhhccCchhHHHHHHHHHHHHHHhhcccCcCcHHhHHHHHHHhccCCCHHH
Q 046417          180 ------------------------LPRLGKAVRIEGFKAKAAVLGVIGSVVRVGGARSKGVLDWLVPCLVEFLCCDDWAT  235 (595)
Q Consensus       180 ------------------------l~rL~klL~~~~~kaK~alLsAIgSlA~a~g~~~~~yl~~lmp~L~e~L~~dDW~~  235 (595)
                                              |..|+.-|+++.+.+|.+++..++++|..    .+.+....+..|.+.+.|+.-.+
T Consensus       351 k~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~s----sP~FA~~aldfLvDMfNDE~~~V  426 (823)
T KOG2259|consen  351 KEWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATS----SPGFAVRALDFLVDMFNDEIEVV  426 (823)
T ss_pred             ccccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcC----CCCcHHHHHHHHHHHhccHHHHH
Confidence                                    34445555667788999999999998843    45667888999999999999999


Q ss_pred             HHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHhH
Q 046417          236 RKAAAEVLGKVAVFDKDLATEYKRSCLAALETRRFDKVKIVRETMNRSLEMWK  288 (595)
Q Consensus       236 RkaAaEaLgsIA~avge~f~py~~~~I~~Le~crfDKVK~VRda~~~aL~~~K  288 (595)
                      |.-|+-+|-.|+... ..=..+.+.++..|+    |...-||+++.+.|...+
T Consensus       427 RL~ai~aL~~Is~~l-~i~eeql~~il~~L~----D~s~dvRe~l~elL~~~~  474 (823)
T KOG2259|consen  427 RLKAIFALTMISVHL-AIREEQLRQILESLE----DRSVDVREALRELLKNAR  474 (823)
T ss_pred             HHHHHHHHHHHHHHh-eecHHHHHHHHHHHH----hcCHHHHHHHHHHHHhcC
Confidence            999999999999873 333445667777788    778888888887776543

>COG1413 FOG: HEAT repeat [Energy production and conversion]

Probab=97.86  E-value=0.00079  Score=70.68  Aligned_cols=200  Identities=25%  Similarity=0.264  Sum_probs=123.7

Q ss_pred             HHHHHHHHHHhCCcCcHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccchhhHHHHHHHHHhhccCCChhHHHHH
Q 046417           39 ATAELESIARTLTQDSFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPHLSKMISTVSCRLRDPDSSVRSAC  118 (595)
Q Consensus        39 A~~~LD~lA~~L~~~~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~PhLpkIL~~IvrrLkD~ds~VR~Ac  118 (595)
                      ...+++.......+..+..++..+.+    .++.+|..+...+|.+..          ...++.+.+.|.|.++.||..+
T Consensus        29 ~l~~~~~~~~~~~~~~~~~~~~~l~~----~~~~vr~~aa~~l~~~~~----------~~av~~l~~~l~d~~~~vr~~a   94 (335)
T COG1413          29 ALAELDDLILELAPEAADELLKLLED----EDLLVRLSAAVALGELGS----------EEAVPLLRELLSDEDPRVRDAA   94 (335)
T ss_pred             HHhccchhhcccchhhHHHHHHHHcC----CCHHHHHHHHHHHhhhch----------HHHHHHHHHHhcCCCHHHHHHH
Confidence            34444444443322345555555554    468899998888655542          3677889999999999999999


Q ss_pred             HHHHHHhhhhhcCCcchhccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhccCc-------
Q 046417          119 VAATTAMSLNITKPSFSVLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNPEVEQLRKLLPRLGKAVRIEG-------  191 (595)
Q Consensus       119 ~~aLg~LA~~l~~~~~~~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d~~~~~L~~Ll~rL~klL~~~~-------  191 (595)
                      +++||.+....       .+.+|+..|..+.+..|...|+.+|..+.+...          +..++.+++++.       
T Consensus        95 ~~aLg~~~~~~-------a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~~a----------~~~l~~~l~~~~~~~a~~~  157 (335)
T COG1413          95 ADALGELGDPE-------AVPPLVELLENDENEGVRAAAARALGKLGDERA----------LDPLLEALQDEDSGSAAAA  157 (335)
T ss_pred             HHHHHccCChh-------HHHHHHHHHHcCCcHhHHHHHHHHHHhcCchhh----------hHHHHHHhccchhhhhhhh
Confidence            99988887533       467888888547888999999999888776421          222222222222       


Q ss_pred             -----hhHHHHHHHHHHHHHHhhcccCcCcHHhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHH
Q 046417          192 -----FKAKAAVLGVIGSVVRVGGARSKGVLDWLVPCLVEFLCCDDWATRKAAAEVLGKVAVFDKDLATEYKRSCLAALE  266 (595)
Q Consensus       192 -----~kaK~alLsAIgSlA~a~g~~~~~yl~~lmp~L~e~L~~dDW~~RkaAaEaLgsIA~avge~f~py~~~~I~~Le  266 (595)
                           ..++.+++.+++.+-          .+...+.|++.+.+.++.+|.+|+.+|+.+....    ......+...++
T Consensus       158 ~~~~~~~~r~~a~~~l~~~~----------~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~----~~~~~~l~~~~~  223 (335)
T COG1413         158 LDAALLDVRAAAAEALGELG----------DPEAIPLLIELLEDEDADVRRAAASALGQLGSEN----VEAADLLVKALS  223 (335)
T ss_pred             ccchHHHHHHHHHHHHHHcC----------ChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch----hhHHHHHHHHhc
Confidence                 123333333322111          2345677888888888888888888888886543    101112222333


Q ss_pred             hccCCchHHHHHHHHHHHHHh
Q 046417          267 TRRFDKVKIVRETMNRSLEMW  287 (595)
Q Consensus       267 ~crfDKVK~VRda~~~aL~~~  287 (595)
                          |---.||-.+..+|...
T Consensus       224 ----~~~~~vr~~~~~~l~~~  240 (335)
T COG1413         224 ----DESLEVRKAALLALGEI  240 (335)
T ss_pred             ----CCCHHHHHHHHHHhccc
Confidence                66677777766665443

>PTZ00429 beta-adaptin; Provisional

Probab=97.85  E-value=0.0062  Score=71.55  Aligned_cols=242  Identities=11%  Similarity=0.055  Sum_probs=137.3

Q ss_pred             HHHHHHHhCCcCcHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccchhhHHHHHHHHHhhccCCChhHHHHHHHH
Q 046417           42 ELESIARTLTQDSFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPHLSKMISTVSCRLRDPDSSVRSACVAA  121 (595)
Q Consensus        42 ~LD~lA~~L~~~~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~PhLpkIL~~IvrrLkD~ds~VR~Ac~~a  121 (595)
                      +|..|+..-.++.++.++..|.....+.+|+|||.|+.++.-+-...++.+..  ..+++.+...|.|+++.|...|+-+
T Consensus       125 ALRtLs~Ir~~~i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pelv~~--~~~~~~L~~LL~D~dp~Vv~nAl~a  202 (746)
T PTZ00429        125 AVRTMMCIRVSSVLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQLFYQ--QDFKKDLVELLNDNNPVVASNAAAI  202 (746)
T ss_pred             HHHHHHcCCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcccccc--cchHHHHHHHhcCCCccHHHHHHHH
Confidence            34455554456668888888888888888999999999999998888875421  1244455566899999998888888


Q ss_pred             HHHhhhhhcC--------------------C--------------cc-h----hccHHHHHHHhhcCChhHHHHHHHHHH
Q 046417          122 TTAMSLNITK--------------------P--------------SF-S----VLSKPLIELILVEQDVNSQVGGAMCLA  162 (595)
Q Consensus       122 Lg~LA~~l~~--------------------~--------------~~-~----~~l~PLi~aLl~d~nk~VQ~~AA~cLa  162 (595)
                      |-.+.....+                    +              |. .    .++.-+...| ...|..|.-.|+-++-
T Consensus       203 L~eI~~~~~~~l~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~P~~~~e~~~il~~l~~~L-q~~N~AVVl~Aik~il  281 (746)
T PTZ00429        203 VCEVNDYGSEKIESSNEWVNRLVYHLPECNEWGQLYILELLAAQRPSDKESAETLLTRVLPRM-SHQNPAVVMGAIKVVA  281 (746)
T ss_pred             HHHHHHhCchhhHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHH
Confidence            7777543110                    0              00 0    0111122222 3456666666666655


Q ss_pred             HHHhcCCCch-HHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHhhcccC----------------------------
Q 046417          163 AAIDAAPNPE-VEQLRKLLPRLGKAVRIEGFKAKAAVLGVIGSVVRVGGARS----------------------------  213 (595)
Q Consensus       163 aviE~a~d~~-~~~L~~Ll~rL~klL~~~~~kaK~alLsAIgSlA~a~g~~~----------------------------  213 (595)
                      .+........ ..++.+|..-++.++ +....+|-.+|..|..++......|                            
T Consensus       282 ~l~~~~~~~~~~~~~~rl~~pLv~L~-ss~~eiqyvaLr~I~~i~~~~P~lf~~~~~~Ff~~~~Dp~yIK~~KLeIL~~L  360 (746)
T PTZ00429        282 NLASRCSQELIERCTVRVNTALLTLS-RRDAETQYIVCKNIHALLVIFPNLLRTNLDSFYVRYSDPPFVKLEKLRLLLKL  360 (746)
T ss_pred             HhcCcCCHHHHHHHHHHHHHHHHHhh-CCCccHHHHHHHHHHHHHHHCHHHHHHHHHhhhcccCCcHHHHHHHHHHHHHH
Confidence            5443221111 122223334344443 3334455555555555544221111                            


Q ss_pred             --cCcHHhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHhHhcC
Q 046417          214 --KGVLDWLVPCLVEFLCCDDWATRKAAAEVLGKVAVFDKDLATEYKRSCLAALETRRFDKVKIVRETMNRSLEMWKEVP  291 (595)
Q Consensus       214 --~~yl~~lmp~L~e~L~~dDW~~RkaAaEaLgsIA~avge~f~py~~~~I~~Le~crfDKVK~VRda~~~aL~~~K~i~  291 (595)
                        ..-+..++.-|.+|..+.|-..+..++.+||.+|.-+...    ...|+.+|-..--+++..|.+++...-.+++..|
T Consensus       361 ane~Nv~~IL~EL~eYa~d~D~ef~r~aIrAIg~lA~k~~~~----a~~cV~~Ll~ll~~~~~~v~e~i~vik~IlrkyP  436 (746)
T PTZ00429        361 VTPSVAPEILKELAEYASGVDMVFVVEVVRAIASLAIKVDSV----APDCANLLLQIVDRRPELLPQVVTAAKDIVRKYP  436 (746)
T ss_pred             cCcccHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhChHH----HHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHCc
Confidence              1122445666777777888889999999999998765443    3344444433333455555554443333334333

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1

Probab=97.82  E-value=0.00083  Score=65.19  Aligned_cols=115  Identities=18%  Similarity=0.240  Sum_probs=84.3

Q ss_pred             ChHHHHHHHHHHHHHHHHccccchhhHHHHHHHHHhhccCCChhHHHHHHHHHHHhhhh-hcCCcchhccHHHHHHHhhc
Q 046417           70 KSPVRKQCVNLLTLLSRSHGDSLSPHLSKMISTVSCRLRDPDSSVRSACVAATTAMSLN-ITKPSFSVLSKPLIELILVE  148 (595)
Q Consensus        70 kp~vRKaaI~lLG~lAEg~gd~I~PhLpkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~-l~~~~~~~~l~PLi~aLl~d  148 (595)
                      +|.+|-.++.++|.++--|+..+-||++    .+...|+|+++.||..|.-.|..|... +.+. -..++.-++..| .|
T Consensus         1 ~~~vR~n~i~~l~DL~~r~~~~ve~~~~----~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~-k~~l~~~~l~~l-~D   74 (178)
T PF12717_consen    1 DPSVRNNAIIALGDLCIRYPNLVEPYLP----NLYKCLRDEDPLVRKTALLVLSHLILEDMIKV-KGQLFSRILKLL-VD   74 (178)
T ss_pred             CHHHHHHHHHHHHHHHHhCcHHHHhHHH----HHHHHHCCCCHHHHHHHHHHHHHHHHcCceee-hhhhhHHHHHHH-cC
Confidence            4789999999999999999988777766    667899999999999999999888753 2211 112334455555 79


Q ss_pred             CChhHHHHHHHHHHHHHhc-CCCchHHHHHHHHHHHHHhhccC
Q 046417          149 QDVNSQVGGAMCLAAAIDA-APNPEVEQLRKLLPRLGKAVRIE  190 (595)
Q Consensus       149 ~nk~VQ~~AA~cLaaviE~-a~d~~~~~L~~Ll~rL~klL~~~  190 (595)
                      .|+.|+..|..+|..+... -+..+...+.+++.+|-....++
T Consensus        75 ~~~~Ir~~A~~~~~e~~~~~~~~~i~~~~~e~i~~l~~~~~~~  117 (178)
T PF12717_consen   75 ENPEIRSLARSFFSELLKKRNPNIIYNNFPELISSLNNCYEHP  117 (178)
T ss_pred             CCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHhCccccc
Confidence            9999999999999998876 34434455555555555544433

>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []

Probab=97.81  E-value=0.0028  Score=67.10  Aligned_cols=195  Identities=16%  Similarity=0.207  Sum_probs=133.3

Q ss_pred             hhHHHHHHHHHhhhcCCCC--hHHHHHHHHHHHH-HhCCcCc----HHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHc
Q 046417           16 TNDLKQRVITCLNKLADRD--TLPVATAELESIA-RTLTQDS----FSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSH   88 (595)
Q Consensus        16 ~~~lk~rvl~~L~KL~DrD--T~r~A~~~LD~lA-~~L~~~~----lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~   88 (595)
                      .+.+-.++.++++.|.|+-  |+.-|++.|-.+- .++-++.    ...++..+.......++..+.-+++++++++=..
T Consensus        38 ~~~~e~~L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltl  117 (309)
T PF05004_consen   38 QEDLEDKLKEAIDLLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTL  117 (309)
T ss_pred             hhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhc
Confidence            3567777889999998766  6667777775543 3443333    3455666655555555677778888899998875


Q ss_pred             c--ccchhhHHHHHHHHHhhccCCCh--hHHHHHHHHHHHhhhhhcCCcchh-ccHHHHHHHhh------cC--------
Q 046417           89 G--DSLSPHLSKMISTVSCRLRDPDS--SVRSACVAATTAMSLNITKPSFSV-LSKPLIELILV------EQ--------  149 (595)
Q Consensus        89 g--d~I~PhLpkIL~~IvrrLkD~ds--~VR~Ac~~aLg~LA~~l~~~~~~~-~l~PLi~aLl~------d~--------  149 (595)
                      |  +..-..+..+.|.+.+.++|...  .+|.+|+.+||.++-..+..+... -+..+++.++.      +.        
T Consensus       118 g~g~~~~ei~~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~  197 (309)
T PF05004_consen  118 GAGEDSEEIFEELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAE  197 (309)
T ss_pred             CCCccHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCC
Confidence            4  66667788889999999999764  479999999999887765433221 12234443321      11        


Q ss_pred             -ChhHHHHHHHHHHHHHhcCCCc-hHHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHhhc
Q 046417          150 -DVNSQVGGAMCLAAAIDAAPNP-EVEQLRKLLPRLGKAVRIEGFKAKAAVLGVIGSVVRVGG  210 (595)
Q Consensus       150 -nk~VQ~~AA~cLaaviE~a~d~-~~~~L~~Ll~rL~klL~~~~~kaK~alLsAIgSlA~a~g  210 (595)
                       ++.+..+|..|-+-++-..+.. +..++...+|+|..+|++++..+|-++=.+|+-++..+.
T Consensus       198 ~~~~l~~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~~  260 (309)
T PF05004_consen  198 DDAALVAAALSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLYELAR  260 (309)
T ss_pred             CccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhh
Confidence             2346666666654444434331 346778899999999999999999999999998887654

The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].

>COG1413 FOG: HEAT repeat [Energy production and conversion]

Probab=97.79  E-value=0.0028  Score=66.51  Aligned_cols=169  Identities=21%  Similarity=0.209  Sum_probs=116.6

Q ss_pred             HHHHHHHHHHHHhCCcCcHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccchhhHHHHHHHHHhhccCCC-----
Q 046417           37 PVATAELESIARTLTQDSFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPHLSKMISTVSCRLRDPD-----  111 (595)
Q Consensus        37 r~A~~~LD~lA~~L~~~~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~PhLpkIL~~IvrrLkD~d-----  111 (595)
                      .+--...+.++..-++..+++++.++..   +.++.+|..+..+||.+-....          +.-++..++|..     
T Consensus        89 ~vr~~a~~aLg~~~~~~a~~~li~~l~~---d~~~~vR~~aa~aL~~~~~~~a----------~~~l~~~l~~~~~~~a~  155 (335)
T COG1413          89 RVRDAAADALGELGDPEAVPPLVELLEN---DENEGVRAAAARALGKLGDERA----------LDPLLEALQDEDSGSAA  155 (335)
T ss_pred             HHHHHHHHHHHccCChhHHHHHHHHHHc---CCcHhHHHHHHHHHHhcCchhh----------hHHHHHHhccchhhhhh
Confidence            3444444455555556779999999986   4679999999999988876554          223334444433     


Q ss_pred             -------hhHHHHHHHHHHHhhhhhcCCcchhccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHH
Q 046417          112 -------SSVRSACVAATTAMSLNITKPSFSVLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNPEVEQLRKLLPRLG  184 (595)
Q Consensus       112 -------s~VR~Ac~~aLg~LA~~l~~~~~~~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d~~~~~L~~Ll~rL~  184 (595)
                             ..||.++..+++.+...-       ...+|.+.+ .+.++.|+..|+.+|..+....        ..+.+.|.
T Consensus       156 ~~~~~~~~~~r~~a~~~l~~~~~~~-------~~~~l~~~l-~~~~~~vr~~Aa~aL~~~~~~~--------~~~~~~l~  219 (335)
T COG1413         156 AALDAALLDVRAAAAEALGELGDPE-------AIPLLIELL-EDEDADVRRAAASALGQLGSEN--------VEAADLLV  219 (335)
T ss_pred             hhccchHHHHHHHHHHHHHHcCChh-------hhHHHHHHH-hCchHHHHHHHHHHHHHhhcch--------hhHHHHHH
Confidence                   258888888888777633       456677777 6777789999999888877643        56778888


Q ss_pred             HhhccCchhHHHHHHHHHHHHHHhhcccCcCcHHhHHHHHHHhccCCCHHHHHHHHHHHH
Q 046417          185 KAVRIEGFKAKAAVLGVIGSVVRVGGARSKGVLDWLVPCLVEFLCCDDWATRKAAAEVLG  244 (595)
Q Consensus       185 klL~~~~~kaK~alLsAIgSlA~a~g~~~~~yl~~lmp~L~e~L~~dDW~~RkaAaEaLg  244 (595)
                      +++.++...++...+.++|-+-          ....++.+...+.+.+|.++..+..+++
T Consensus       220 ~~~~~~~~~vr~~~~~~l~~~~----------~~~~~~~l~~~l~~~~~~~~~~~~~~~~  269 (335)
T COG1413         220 KALSDESLEVRKAALLALGEIG----------DEEAVDALAKALEDEDVILALLAAAALG  269 (335)
T ss_pred             HHhcCCCHHHHHHHHHHhcccC----------cchhHHHHHHHHhccchHHHHHHHHHhc
Confidence            8998888887766655555211          2345566777777777777777766665

>KOG1248 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.76  E-value=0.0083  Score=71.94  Aligned_cols=270  Identities=16%  Similarity=0.170  Sum_probs=179.2

Q ss_pred             HHHHHHHHHhhhc-CCCC---hHHHHHHHHHH---HHHhCCcCcHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHH--c
Q 046417           18 DLKQRVITCLNKL-ADRD---TLPVATAELES---IARTLTQDSFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRS--H   88 (595)
Q Consensus        18 ~lk~rvl~~L~KL-~DrD---T~r~A~~~LD~---lA~~L~~~~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg--~   88 (595)
                      ++-..+...+..+ +|-|   -....+..||.   +|...+.+.+..++.......++..+.++|-+.++|+.+.++  +
T Consensus       608 dv~~~l~~s~~e~as~~~~s~~~~~~~slLdl~~~~a~~~~e~~vs~l~~v~~~~e~~~~~~vQkK~yrlL~~l~~~~s~  687 (1176)
T KOG1248|consen  608 DVVGSLKDSAGELASDLDESVASFKTLSLLDLLIALAPVQTESQVSKLFTVDPEFENSSSTKVQKKAYRLLEELSSSPSG  687 (1176)
T ss_pred             HHHHHHHHHHHhHhccchhhhhhHHHHHHHHHHHhhhccccchhHHHHHHhhHHhhccccHHHHHHHHHHHHHHhcCCch
Confidence            4444444555555 3443   22334455554   455555666777776666666666789999999999999999  4


Q ss_pred             cccchhhHHHHHHHHHhhccCCChhHHHHHHHHHHHhhhhhcCCcchhccHHHHHHHhh--cCChhHHHHHHHHHHHHH-
Q 046417           89 GDSLSPHLSKMISTVSCRLRDPDSSVRSACVAATTAMSLNITKPSFSVLSKPLIELILV--EQDVNSQVGGAMCLAAAI-  165 (595)
Q Consensus        89 gd~I~PhLpkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~~~~~~~~l~PLi~aLl~--d~nk~VQ~~AA~cLaavi-  165 (595)
                      .-++..|+..|...+...+++....+|...+.+|-.|-+.+.......+.+-+.++++.  +.|......|.-||.-++ 
T Consensus       688 ~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k~I~EvIL~~Ke~n~~aR~~Af~lL~~i~~  767 (1176)
T KOG1248|consen  688 EGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIPKLIPEVILSLKEVNVKARRNAFALLVFIGA  767 (1176)
T ss_pred             hhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcccccHHHHhhHHHHHHHHHH
Confidence            46668889999999999999988889888888888887766311111233444555543  445555566777766665 


Q ss_pred             -hc----CCCchHHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHH-hhcccCcCcHHhHHHHHHHhccCCCHHHHHHH
Q 046417          166 -DA----APNPEVEQLRKLLPRLGKAVRIEGFKAKAAVLGVIGSVVR-VGGARSKGVLDWLVPCLVEFLCCDDWATRKAA  239 (595)
Q Consensus       166 -E~----a~d~~~~~L~~Ll~rL~klL~~~~~kaK~alLsAIgSlA~-a~g~~~~~yl~~lmp~L~e~L~~dDW~~RkaA  239 (595)
                       ..    ..++....+++++.-|...|-.......+.-|-+++.++. -.+....+++..++..+.-+|.+..-..|++|
T Consensus       768 i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e~~~~ld~~~l~~li~~V~~~L~s~sreI~kaA  847 (1176)
T KOG1248|consen  768 IQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQEFKNILDDETLEKLISMVCLYLASNSREIAKAA  847 (1176)
T ss_pred             HHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence             33    2233245777777777777655555555444667777765 33444578889999999999999999999999


Q ss_pred             HHHHHHHHHHhH-HhHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHh
Q 046417          240 AEVLGKVAVFDK-DLATEYKRSCLAALETRRFDKVKIVRETMNRSLEMW  287 (595)
Q Consensus       240 aEaLgsIA~avg-e~f~py~~~~I~~Le~crfDKVK~VRda~~~aL~~~  287 (595)
                      +..|..+..... ..+.+|.+.+|..+-..-.|+-..||-.+-.=|+.+
T Consensus       848 I~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~LlekL  896 (1176)
T KOG1248|consen  848 IGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHKIKVRKKVRLLLEKL  896 (1176)
T ss_pred             HHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence            998888877765 477777776666655555575555555544444333

>cd00020 ARM Armadillo/beta-catenin-like repeats

Probab=97.69  E-value=0.00019  Score=62.46  Aligned_cols=110  Identities=22%  Similarity=0.146  Sum_probs=82.8

Q ss_pred             ccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCCCchHHHHH-HHHHHHHHhhccCchhHHHHHHHHHHHHHHhhcccCcC
Q 046417          137 LSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNPEVEQLR-KLLPRLGKAVRIEGFKAKAAVLGVIGSVVRVGGARSKG  215 (595)
Q Consensus       137 ~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d~~~~~L~-~Ll~rL~klL~~~~~kaK~alLsAIgSlA~a~g~~~~~  215 (595)
                      .+++|++.| .+.+..+...|+.||..+....++....++. .+++.|.++|++++..++..++.+++.++.........
T Consensus         8 ~i~~l~~~l-~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~   86 (120)
T cd00020           8 GLPALVSLL-SSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLI   86 (120)
T ss_pred             ChHHHHHHH-HcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHHH
Confidence            456667766 5667778888888888888764333334555 68899999999988899999999999988644322111


Q ss_pred             cH-HhHHHHHHHhccCCCHHHHHHHHHHHHHHH
Q 046417          216 VL-DWLVPCLVEFLCCDDWATRKAAAEVLGKVA  247 (595)
Q Consensus       216 yl-~~lmp~L~e~L~~dDW~~RkaAaEaLgsIA  247 (595)
                      +. ..+++.|.+++.+.+..+|..|+.+|..|+
T Consensus        87 ~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~  119 (120)
T cd00020          87 VLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA  119 (120)
T ss_pred             HHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence            22 237899999999999999999999999875

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.

>PTZ00429 beta-adaptin; Provisional

Probab=97.67  E-value=0.0011  Score=77.82  Aligned_cols=133  Identities=11%  Similarity=0.058  Sum_probs=99.0

Q ss_pred             cCCCCChHHHHHHHHHHHHHHHHccccchhhHHHHHHHHHhhccCCChhHHHHHHHHHHHhhhhhcCCcch-hccHHHHH
Q 046417           65 TDSSSKSPVRKQCVNLLTLLSRSHGDSLSPHLSKMISTVSCRLRDPDSSVRSACVAATTAMSLNITKPSFS-VLSKPLIE  143 (595)
Q Consensus        65 ~~ss~kp~vRKaaI~lLG~lAEg~gd~I~PhLpkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~~~~~~-~~l~PLi~  143 (595)
                      ..++.+...||=+.+.+...++..+|.+    --.+.++.+-++|+++.||.-+..+|+.+-..-    .. .++.|+..
T Consensus        76 ~~~S~d~elKKLvYLYL~~ya~~~pela----lLaINtl~KDl~d~Np~IRaLALRtLs~Ir~~~----i~e~l~~~lkk  147 (746)
T PTZ00429         76 LAPSTDLELKKLVYLYVLSTARLQPEKA----LLAVNTFLQDTTNSSPVVRALAVRTMMCIRVSS----VLEYTLEPLRR  147 (746)
T ss_pred             HhCCCCHHHHHHHHHHHHHHcccChHHH----HHHHHHHHHHcCCCCHHHHHHHHHHHHcCCcHH----HHHHHHHHHHH
Confidence            4556789999999999999988877632    234678899999999999999999888765421    11 25566666


Q ss_pred             HHhhcCChhHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHh
Q 046417          144 LILVEQDVNSQVGGAMCLAAAIDAAPNPEVEQLRKLLPRLGKAVRIEGFKAKAAVLGVIGSVVRV  208 (595)
Q Consensus       144 aLl~d~nk~VQ~~AA~cLaaviE~a~d~~~~~L~~Ll~rL~klL~~~~~kaK~alLsAIgSlA~a  208 (595)
                      +| .|.+++|-..||+|+.++....++.+  .-..+.++|.++|.+.+..+...++.++-.|...
T Consensus       148 ~L-~D~~pYVRKtAalai~Kly~~~pelv--~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~  209 (746)
T PTZ00429        148 AV-ADPDPYVRKTAAMGLGKLFHDDMQLF--YQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDY  209 (746)
T ss_pred             Hh-cCCCHHHHHHHHHHHHHHHhhCcccc--cccchHHHHHHHhcCCCccHHHHHHHHHHHHHHh
Confidence            66 78999999999999999987655422  1224667777889888888877777766666543

>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]

Probab=97.65  E-value=0.0021  Score=72.45  Aligned_cols=208  Identities=13%  Similarity=0.122  Sum_probs=134.9

Q ss_pred             HHHHHHHHHHHHccccchh-hHHHHHHHHHhhccCCChhHHHHHHHHHHHhhhhhcCCcchhccHHHHHHHhhcCChhHH
Q 046417           76 QCVNLLTLLSRSHGDSLSP-HLSKMISTVSCRLRDPDSSVRSACVAATTAMSLNITKPSFSVLSKPLIELILVEQDVNSQ  154 (595)
Q Consensus        76 aaI~lLG~lAEg~gd~I~P-hLpkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~~~~~~~~l~PLi~aLl~d~nk~VQ  154 (595)
                      ..|.++|.||.-.++++.+ .+-+|.=-++..|+.-+-.+|.++..++|.+++.+.  |. ..+.-|+..| .-++....
T Consensus       707 nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~aiG--Pq-dvL~~LlnnL-kvqeRq~R  782 (975)
T COG5181         707 NTIALVGTICMNSPEYIGVREWMRICFELVDSLKSWNKEIRRNATETFGCISRAIG--PQ-DVLDILLNNL-KVQERQQR  782 (975)
T ss_pred             hHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHhhcC--HH-HHHHHHHhcc-hHHHHHhh
Confidence            4455555555555555533 233444444555555555666666666666666552  21 1233333333 12333333


Q ss_pred             HHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHhhcccCcCcHHhHHHHHHHhccCCCHH
Q 046417          155 VGGAMCLAAAIDAAPNPEVEQLRKLLPRLGKAVRIEGFKAKAAVLGVIGSVVRVGGARSKGVLDWLVPCLVEFLCCDDWA  234 (595)
Q Consensus       155 ~~AA~cLaaviE~a~d~~~~~L~~Ll~rL~klL~~~~~kaK~alLsAIgSlA~a~g~~~~~yl~~lmp~L~e~L~~dDW~  234 (595)
                      .+.+.|++-+-|..+.      -.++|.|+.=-..|...+++.+|-++.=+++-.|.....|+-.+.|.|.+.|+|.|-.
T Consensus       783 vctsvaI~iVae~cgp------fsVlP~lm~dY~TPe~nVQnGvLkam~fmFeyig~~s~dYvy~itPlleDAltDrD~v  856 (975)
T COG5181         783 VCTSVAISIVAEYCGP------FSVLPTLMSDYETPEANVQNGVLKAMCFMFEYIGQASLDYVYSITPLLEDALTDRDPV  856 (975)
T ss_pred             hhhhhhhhhhHhhcCc------hhhHHHHHhcccCchhHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhcccchH
Confidence            3444444444444322      2456666666678888899999999998888777777899999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHh-HHhHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHhHhcCCC
Q 046417          235 TRKAAAEVLGKVAVFD-KDLATEYKRSCLAALETRRFDKVKIVRETMNRSLEMWKEVPGV  293 (595)
Q Consensus       235 ~RkaAaEaLgsIA~av-ge~f~py~~~~I~~Le~crfDKVK~VRda~~~aL~~~K~i~~~  293 (595)
                      -|--|...+-+|+..+ |-+...-+=..++.|=--=||-.++|-.++-|.++.+...-|.
T Consensus       857 hRqta~nvI~Hl~Lnc~gtg~eda~IHLlNllwpNIle~sPhvi~~~~Eg~e~~~~~lg~  916 (975)
T COG5181         857 HRQTAMNVIRHLVLNCPGTGDEDAAIHLLNLLWPNILEPSPHVIQSFDEGMESFATVLGS  916 (975)
T ss_pred             HHHHHHHHHHHHhcCCCCcccHHHHHHHHHHhhhhccCCCcHHHHHHHHHHHHHHHHhcc
Confidence            9999999999998865 3222222223455555556788899999999999998887755

>TIGR02270 conserved hypothetical protein

Probab=97.64  E-value=0.0019  Score=71.05  Aligned_cols=104  Identities=14%  Similarity=0.063  Sum_probs=66.5

Q ss_pred             HHHHHHHHHHhCCcCcHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccchhhHHHHHHHHHhhccCCChhHHHHH
Q 046417           39 ATAELESIARTLTQDSFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPHLSKMISTVSCRLRDPDSSVRSAC  118 (595)
Q Consensus        39 A~~~LD~lA~~L~~~~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~PhLpkIL~~IvrrLkD~ds~VR~Ac  118 (595)
                      .....+.|+..-++...+.++..|.    +.+|.+|..++.++|..-   .+        -.+.+++.|+|+++.||.++
T Consensus       103 r~aaa~ALg~i~~~~a~~~L~~~L~----~~~p~vR~aal~al~~r~---~~--------~~~~L~~~L~d~d~~Vra~A  167 (410)
T TIGR02270       103 CAGIQAALGWLGGRQAEPWLEPLLA----ASEPPGRAIGLAALGAHR---HD--------PGPALEAALTHEDALVRAAA  167 (410)
T ss_pred             HHHHHHHHhcCCchHHHHHHHHHhc----CCChHHHHHHHHHHHhhc---cC--------hHHHHHHHhcCCCHHHHHHH
Confidence            3344444444333444556555553    346778887777666611   11        13356667789999999999


Q ss_pred             HHHHHHhhhhhcCCcchhccHHHHHHHhhcCChhHHHHHHHHHHHHH
Q 046417          119 VAATTAMSLNITKPSFSVLSKPLIELILVEQDVNSQVGGAMCLAAAI  165 (595)
Q Consensus       119 ~~aLg~LA~~l~~~~~~~~l~PLi~aLl~d~nk~VQ~~AA~cLaavi  165 (595)
                      +.+||.+...-       .+.+|..++ .+.++.|..+|+.+|..+.
T Consensus       168 ~raLG~l~~~~-------a~~~L~~al-~d~~~~VR~aA~~al~~lG  206 (410)
T TIGR02270       168 LRALGELPRRL-------SESTLRLYL-RDSDPEVRFAALEAGLLAG  206 (410)
T ss_pred             HHHHHhhcccc-------chHHHHHHH-cCCCHHHHHHHHHHHHHcC
Confidence            99988887522       345566555 7888999988888876553

Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.

>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]

Probab=97.64  E-value=0.0025  Score=74.56  Aligned_cols=229  Identities=17%  Similarity=0.099  Sum_probs=167.7

Q ss_pred             CcHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHcc--ccchhhHHHHHHHHHhhccCCChhHHHHHHHHHHHhhhhhc
Q 046417           53 DSFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHG--DSLSPHLSKMISTVSCRLRDPDSSVRSACVAATTAMSLNIT  130 (595)
Q Consensus        53 ~~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~g--d~I~PhLpkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~  130 (595)
                      ..+..+++.+........+.+|-..+.-+ -..+...  -.+..+-...+|.|+..-.|....||.|..+.+.+++....
T Consensus       433 ~ti~~llp~~~~~l~de~~~V~lnli~~l-s~~~~v~~v~g~~~~s~slLp~i~el~~d~~wRvr~ail~~ip~la~q~~  511 (759)
T KOG0211|consen  433 RTISELLPLLIGNLKDEDPIVRLNLIDKL-SLLEEVNDVIGISTVSNSLLPAIVELAEDLLWRVRLAILEYIPQLALQLG  511 (759)
T ss_pred             cCccccChhhhhhcchhhHHHHHhhHHHH-HHHHhccCcccchhhhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHhhh
Confidence            33666666666555566789999988655 3344444  44466777889999999989888999999999999998764


Q ss_pred             CCcchhccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHhhc
Q 046417          131 KPSFSVLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNPEVEQLRKLLPRLGKAVRIEGFKAKAAVLGVIGSVVRVGG  210 (595)
Q Consensus       131 ~~~~~~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d~~~~~L~~Ll~rL~klL~~~~~kaK~alLsAIgSlA~a~g  210 (595)
                      ..-+...+.+|...=+.+..-.++.+|+.+|.++++.-+.  .-+-+.+.++++....++++..|.+.+.+|..+|.+.|
T Consensus       512 ~~~~~~~~~~l~~~~l~d~v~~Ir~~aa~~l~~l~~~~G~--~w~~~~~i~k~L~~~~q~~y~~R~t~l~si~~la~v~g  589 (759)
T KOG0211|consen  512 VEFFDEKLAELLRTWLPDHVYSIREAAARNLPALVETFGS--EWARLEEIPKLLAMDLQDNYLVRMTTLFSIHELAEVLG  589 (759)
T ss_pred             hHHhhHHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHhCc--chhHHHhhHHHHHHhcCcccchhhHHHHHHHHHHHHhc
Confidence            1111112333333322344455889999999999998652  12667899999999999999999999999999999887


Q ss_pred             ccCcCcHHhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhH-HhHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHhHh
Q 046417          211 ARSKGVLDWLVPCLVEFLCCDDWATRKAAAEVLGKVAVFDK-DLATEYKRSCLAALETRRFDKVKIVRETMNRSLEMWKE  289 (595)
Q Consensus       211 ~~~~~yl~~lmp~L~e~L~~dDW~~RkaAaEaLgsIA~avg-e~f~py~~~~I~~Le~crfDKVK~VRda~~~aL~~~K~  289 (595)
                      ..  -+-+.++|.+.++..|..=.+|.-++..|..+...+- .....   .+.+.++...-|-=.-||-.+..|++....
T Consensus       590 ~e--i~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~~~L~~~~~~~---~v~pll~~L~~d~~~dvr~~a~~a~~~i~l  664 (759)
T KOG0211|consen  590 QE--ITCEDLLPVFLDLVKDPVANVRINVAKHLPKILKLLDESVRDE---EVLPLLETLSSDQELDVRYRAILAFGSIEL  664 (759)
T ss_pred             cH--HHHHHHhHHHHHhccCCchhhhhhHHHHHHHHHhhcchHHHHH---HHHHHHHHhccCcccchhHHHHHHHHHHHH
Confidence            65  4557889999999999988999999999999977663 23333   333445555557777888888888877765

>KOG2956 consensus CLIP-associating protein [General function prediction only]

Probab=97.50  E-value=0.005  Score=67.80  Aligned_cols=207  Identities=13%  Similarity=0.123  Sum_probs=135.0

Q ss_pred             HHHhCCcCc---HHHHHHhhhhcCCCCChHHHHHHHH-HHHHHHHHccccchhhHHHHHHHHHhhccC-CChhHHHHHHH
Q 046417           46 IARTLTQDS---FSSFLNCLQTTDSSSKSPVRKQCVN-LLTLLSRSHGDSLSPHLSKMISTVSCRLRD-PDSSVRSACVA  120 (595)
Q Consensus        46 lA~~L~~~~---lp~fL~~L~d~~ss~kp~vRKaaI~-lLG~lAEg~gd~I~PhLpkIL~~IvrrLkD-~ds~VR~Ac~~  120 (595)
                      ...+++++.   .+.....|.+...+.+...|+.++. ++++++++---.=-.|..+|+-.++.-|.| .+...+.-|..
T Consensus       273 ~~~~~~p~~~~~~~~v~~~l~~~~g~e~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLr  352 (516)
T KOG2956|consen  273 SMDQLTPNSVDQSALVADLLKEISGSERASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALR  352 (516)
T ss_pred             chhhCCCCCcchhHHHHHHHHhccCccchhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHH
Confidence            334444433   5566666666555567789999998 888888875433355899999999999999 56777888888


Q ss_pred             HHHHhhhhhc----CCcchhccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhccCchhHHH
Q 046417          121 ATTAMSLNIT----KPSFSVLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNPEVEQLRKLLPRLGKAVRIEGFKAKA  196 (595)
Q Consensus       121 aLg~LA~~l~----~~~~~~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d~~~~~L~~Ll~rL~klL~~~~~kaK~  196 (595)
                      .|+.|...=.    +..++++++ ++++- .+..+.|-..|+-|.-..+-.  ..+...+.-|+|.|+.    ...+.-.
T Consensus       353 vL~~ml~~Q~~~l~DstE~ai~K-~Leaa-~ds~~~v~~~Aeed~~~~las--~~P~~~I~~i~~~Ilt----~D~~~~~  424 (516)
T KOG2956|consen  353 VLREMLTNQPARLFDSTEIAICK-VLEAA-KDSQDEVMRVAEEDCLTTLAS--HLPLQCIVNISPLILT----ADEPRAV  424 (516)
T ss_pred             HHHHHHHhchHhhhchHHHHHHH-HHHHH-hCCchhHHHHHHHHHHHHHHh--hCchhHHHHHhhHHhc----CcchHHH
Confidence            8887775432    111222333 33333 233333333333332222221  1122344456666554    4444445


Q ss_pred             HHHHHHHHHHHhh-cccCcCcHHhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhH-HhHHHHHHH
Q 046417          197 AVLGVIGSVVRVG-GARSKGVLDWLVPCLVEFLCCDDWATRKAAAEVLGKVAVFDK-DLATEYKRS  260 (595)
Q Consensus       197 alLsAIgSlA~a~-g~~~~~yl~~lmp~L~e~L~~dDW~~RkaAaEaLgsIA~avg-e~f~py~~~  260 (595)
                      ++|-.+--+++-. .+.....++.++|++++...+..-.+||.|.=||-+|...+| +.|.||...
T Consensus       425 ~~iKm~Tkl~e~l~~EeL~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv~~vG~~~mePhL~~  490 (516)
T KOG2956|consen  425 AVIKMLTKLFERLSAEELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMVNRVGMEEMEPHLEQ  490 (516)
T ss_pred             HHHHHHHHHHhhcCHHHHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHHHHHhHHhhhhHhhh
Confidence            6666777777632 333467789999999999999999999999999999999999 899998754

>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins

Probab=97.49  E-value=0.0057  Score=66.98  Aligned_cols=219  Identities=18%  Similarity=0.198  Sum_probs=145.1

Q ss_pred             HHHHHHhCCcCc----HHHHHHhhhhc-CCCCChHHHHHHHHHHHHHHHHccccchhhHHHHHHHHHhhc-cCCChhHHH
Q 046417           43 LESIARTLTQDS----FSSFLNCLQTT-DSSSKSPVRKQCVNLLTLLSRSHGDSLSPHLSKMISTVSCRL-RDPDSSVRS  116 (595)
Q Consensus        43 LD~lA~~L~~~~----lp~fL~~L~d~-~ss~kp~vRKaaI~lLG~lAEg~gd~I~PhLpkIL~~IvrrL-kD~ds~VR~  116 (595)
                      +-.+...++++.    ...++..+... ....++..|..+..+++.++.-+++.-  .+..++..+...+ ...++..|.
T Consensus       171 ~~~il~~l~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~--~l~~~l~~~~~~~~~~~~~~~~~  248 (415)
T PF12460_consen  171 FSAILCSLRKDVSLPDLEELLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDD--DLDEFLDSLLQSISSSEDSELRP  248 (415)
T ss_pred             HHHHHHcCCcccCccCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChh--hHHHHHHHHHhhhcccCCcchhH
Confidence            334445555433    22344444333 233458999999999999999874221  4555555555555 444555666


Q ss_pred             HHHHHHHHhhhhhc-CC-cch-hccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCCCc-------hH------HHHHHHH
Q 046417          117 ACVAATTAMSLNIT-KP-SFS-VLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNP-------EV------EQLRKLL  180 (595)
Q Consensus       117 Ac~~aLg~LA~~l~-~~-~~~-~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d~-------~~------~~L~~Ll  180 (595)
                      .+...+.-++.-+. +. +.. .++.-|++.| .+  +.+-..||-++.-++...++.       .+      -++..++
T Consensus       249 ~~~~~~~Wi~KaLv~R~~~~~~~~~~~L~~lL-~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~  325 (415)
T PF12460_consen  249 QALEILIWITKALVMRGHPLATELLDKLLELL-SS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVL  325 (415)
T ss_pred             HHHHHHHHHHHHHHHcCCchHHHHHHHHHHHh-CC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHH
Confidence            66666555554332 21 222 3666677766 33  555666777777766542111       11      1444678


Q ss_pred             HHHHHhhccCchhHHHHHHHHHHHHHHhh-cccCcCcHHhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhHHhHHHHHH
Q 046417          181 PRLGKAVRIEGFKAKAAVLGVIGSVVRVG-GARSKGVLDWLVPCLVEFLCCDDWATRKAAAEVLGKVAVFDKDLATEYKR  259 (595)
Q Consensus       181 ~rL~klL~~~~~kaK~alLsAIgSlA~a~-g~~~~~yl~~lmp~L~e~L~~dDW~~RkaAaEaLgsIA~avge~f~py~~  259 (595)
                      |+|...++...-..|...+-|++.+.... ..-..++++.++|.|.+.|.-+|..+|.+++++|..+...-.+.+.+|..
T Consensus       326 p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~~~~i~~hl~  405 (415)
T PF12460_consen  326 PKLLEGFKEADDEIKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEAPELISEHLS  405 (415)
T ss_pred             HHHHHHHhhcChhhHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHH
Confidence            88888887776668888888888888633 33356888999999999999999999999999999998877889999998


Q ss_pred             HHHHHHH
Q 046417          260 SCLAALE  266 (595)
Q Consensus       260 ~~I~~Le  266 (595)
                      .+++.|-
T Consensus       406 sLI~~LL  412 (415)
T PF12460_consen  406 SLIPRLL  412 (415)
T ss_pred             HHHHHHH
Confidence            8887764

MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=97.48  E-value=0.0051  Score=73.73  Aligned_cols=72  Identities=18%  Similarity=0.268  Sum_probs=48.4

Q ss_pred             HHHHHHHhhccCchhHHHHHHHHHHHHHHhhcccCcCcHHhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhH
Q 046417          179 LLPRLGKAVRIEGFKAKAAVLGVIGSVVRVGGARSKGVLDWLVPCLVEFLCCDDWATRKAAAEVLGKVAVFDK  251 (595)
Q Consensus       179 Ll~rL~klL~~~~~kaK~alLsAIgSlA~a~g~~~~~yl~~lmp~L~e~L~~dDW~~RkaAaEaLgsIA~avg  251 (595)
                      |+|-|...|.+.--.+-.-+|.++..++.-+-. -++++-.++.....+|-+++...|-+++..|.+++..++
T Consensus       657 llPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll-~K~~v~~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~~ls  728 (1431)
T KOG1240|consen  657 LLPLLQQGLTDGEEAVIVSALGSLSILIKLGLL-RKPAVKDILQDVLPLLCHPNLWIRRAVLGIIAAIARQLS  728 (1431)
T ss_pred             HHHHHHHhccCcchhhHHHHHHHHHHHHHhccc-chHHHHHHHHhhhhheeCchHHHHHHHHHHHHHHHhhhh
Confidence            556666666554322222334444444444333 267788888888889999888889999999999998765

>KOG2956 consensus CLIP-associating protein [General function prediction only]

Probab=97.47  E-value=0.0036  Score=68.87  Aligned_cols=193  Identities=17%  Similarity=0.175  Sum_probs=136.6

Q ss_pred             HHHHHhhhcCCC---ChHHHHHHHHHHHHHh--CC--cCcHHHHHHhhhhcCCC-CChHHHHHHHHHHHHHHHHccccch
Q 046417           22 RVITCLNKLADR---DTLPVATAELESIART--LT--QDSFSSFLNCLQTTDSS-SKSPVRKQCVNLLTLLSRSHGDSLS   93 (595)
Q Consensus        22 rvl~~L~KL~Dr---DT~r~A~~~LD~lA~~--L~--~~~lp~fL~~L~d~~ss-~kp~vRKaaI~lLG~lAEg~gd~I~   93 (595)
                      .|.+-|.++++.   |.++.|+.+|-.|...  +.  .+.+..+|..+.+.... .+..-|+-|++.|+.+++..+..+.
T Consensus       287 ~v~~~l~~~~g~e~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~  366 (516)
T KOG2956|consen  287 LVADLLKEISGSERASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLF  366 (516)
T ss_pred             HHHHHHHhccCccchhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhh
Confidence            455666777654   4788999998877653  22  23366666666666554 4578999999999999999999888


Q ss_pred             hhHHHHHHHHHhhccCCChhH-HHHHHHHHHHhhhhhcCCcchhccHHHHHHHhhcCChhHHHHHHH-HHHHHHhcCC-C
Q 046417           94 PHLSKMISTVSCRLRDPDSSV-RSACVAATTAMSLNITKPSFSVLSKPLIELILVEQDVNSQVGGAM-CLAAAIDAAP-N  170 (595)
Q Consensus        94 PhLpkIL~~IvrrLkD~ds~V-R~Ac~~aLg~LA~~l~~~~~~~~l~PLi~aLl~d~nk~VQ~~AA~-cLaaviE~a~-d  170 (595)
                      .+-.-.+--++..-+|++..| |.|.-+++..++.+..   +. -+..+...|+++.++.  ..|+. ++.+++|... +
T Consensus       367 DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P---~~-~I~~i~~~Ilt~D~~~--~~~~iKm~Tkl~e~l~~E  440 (516)
T KOG2956|consen  367 DSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLP---LQ-CIVNISPLILTADEPR--AVAVIKMLTKLFERLSAE  440 (516)
T ss_pred             chHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCc---hh-HHHHHhhHHhcCcchH--HHHHHHHHHHHHhhcCHH
Confidence            888777888888889988764 8888888888888773   21 1222333344444443  23344 7899999964 5


Q ss_pred             chHHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHH-HhhcccCcCcHHhH
Q 046417          171 PEVEQLRKLLPRLGKAVRIEGFKAKAAVLGVIGSVV-RVGGARSKGVLDWL  220 (595)
Q Consensus       171 ~~~~~L~~Ll~rL~klL~~~~~kaK~alLsAIgSlA-~a~g~~~~~yl~~l  220 (595)
                      .+...++.|+|.+++..++..--+|-.++=|+=++. .+|...+.||+..|
T Consensus       441 eL~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv~~vG~~~mePhL~~L  491 (516)
T KOG2956|consen  441 ELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMVNRVGMEEMEPHLEQL  491 (516)
T ss_pred             HHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHHHHHhHHhhhhHhhhc
Confidence            556899999999999999987777655554444444 45557788998765

>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.45  E-value=0.0024  Score=68.51  Aligned_cols=249  Identities=13%  Similarity=0.128  Sum_probs=157.1

Q ss_pred             hhhcCCCChHHHHHHHHHHHHHhCC-------cCcHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHH--HccccchhhHH
Q 046417           27 LNKLADRDTLPVATAELESIARTLT-------QDSFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSR--SHGDSLSPHLS   97 (595)
Q Consensus        27 L~KL~DrDT~r~A~~~LD~lA~~L~-------~~~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAE--g~gd~I~PhLp   97 (595)
                      |+|--|.-.++-|...|-.|.....       ...+|++++.+..    .++.+|..|..+++.++-  .+-..+..-=|
T Consensus       175 LakskdirvqrnatgaLlnmThs~EnRr~LV~aG~lpvLVsll~s----~d~dvqyycttaisnIaVd~~~Rk~Laqaep  250 (550)
T KOG4224|consen  175 LAKSKDIRVQRNATGALLNMTHSRENRRVLVHAGGLPVLVSLLKS----GDLDVQYYCTTAISNIAVDRRARKILAQAEP  250 (550)
T ss_pred             hcccchhhHHHHHHHHHHHhhhhhhhhhhhhccCCchhhhhhhcc----CChhHHHHHHHHhhhhhhhHHHHHHHHhccc
Confidence            3343355588889999988877643       3447888877765    468899999999998874  44466677778


Q ss_pred             HHHHHHHhhccCCChhHHHHHHHHHHHhhhhhcCCcch--h-ccHHHHHHHhhcCChhHHHHHHHHHHHHH-hcCCCc-h
Q 046417           98 KMISTVSCRLRDPDSSVRSACVAATTAMSLNITKPSFS--V-LSKPLIELILVEQDVNSQVGGAMCLAAAI-DAAPNP-E  172 (595)
Q Consensus        98 kIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~~~~~~--~-~l~PLi~aLl~d~nk~VQ~~AA~cLaavi-E~a~d~-~  172 (595)
                      +++|.++....|+++.|.--+-.+|+.++....-+-.+  . -++-+++.| .+..-..-.+...|+..+- -...+. +
T Consensus       251 ~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq~eiv~ag~lP~lv~Ll-qs~~~plilasVaCIrnisihplNe~lI  329 (550)
T KOG4224|consen  251 KLVPALVDLMDDGSDKVKCQAGLALRNLASDTEYQREIVEAGSLPLLVELL-QSPMGPLILASVACIRNISIHPLNEVLI  329 (550)
T ss_pred             chHHHHHHHHhCCChHHHHHHHHHHhhhcccchhhhHHHhcCCchHHHHHH-hCcchhHHHHHHHHHhhcccccCcccce
Confidence            99999999999999999888888999999643211111  1 344455555 4444333444555554432 111111 1


Q ss_pred             --HHHHHHHHHHHHHhhccC-chhHHHHHHHHHHHHHHhhcccCcCcH-HhHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Q 046417          173 --VEQLRKLLPRLGKAVRIE-GFKAKAAVLGVIGSVVRVGGARSKGVL-DWLVPCLVEFLCCDDWATRKAAAEVLGKVAV  248 (595)
Q Consensus       173 --~~~L~~Ll~rL~klL~~~-~~kaK~alLsAIgSlA~a~g~~~~~yl-~~lmp~L~e~L~~dDW~~RkaAaEaLgsIA~  248 (595)
                        .++|.+    |+.+|+-. +-.+|-++.+.+..+|...+..-..++ ...+|.|++.+-|..-.+|....-|++.+|.
T Consensus       330 ~dagfl~p----LVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~Lal  405 (550)
T KOG4224|consen  330 ADAGFLRP----LVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQSEISACIAQLAL  405 (550)
T ss_pred             ecccchhH----HHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHHHHh
Confidence              234443    34445433 333566778889888875443322222 3468999999988765665555556666554


Q ss_pred             Hh--HHhHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHH
Q 046417          249 FD--KDLATEYKRSCLAALETRRFDKVKIVRETMNRSLEM  286 (595)
Q Consensus       249 av--ge~f~py~~~~I~~Le~crfDKVK~VRda~~~aL~~  286 (595)
                      ..  ++.|..+  -++++|-..-+|--.-||+.+..||--
T Consensus       406 ~d~~k~~lld~--gi~~iLIp~t~s~s~Ev~gNaAaAL~N  443 (550)
T KOG4224|consen  406 NDNDKEALLDS--GIIPILIPWTGSESEEVRGNAAAALIN  443 (550)
T ss_pred             ccccHHHHhhc--CCcceeecccCccchhhcccHHHHHHh
Confidence            43  4444433  245555556667788899998888753

>KOG2933 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.44  E-value=0.0014  Score=68.88  Aligned_cols=121  Identities=21%  Similarity=0.232  Sum_probs=94.0

Q ss_pred             HHhhhhcCCCCChHHHHHHHHHHHHHHHHccccchhhHHHHHHHHHhhccCCChhHHHHHHHHHHHhhhhhcCCcchhcc
Q 046417           59 LNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPHLSKMISTVSCRLRDPDSSVRSACVAATTAMSLNITKPSFSVLS  138 (595)
Q Consensus        59 L~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~PhLpkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~~~~~~~~l  138 (595)
                      |.....-.++.+|...=.++..+-.+++.|.+.+.+.|.+++-+|++.++.+.+.|-.|+|.|++.|...+-+. ....+
T Consensus        90 l~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~-i~~~l  168 (334)
T KOG2933|consen   90 LKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNS-IDQEL  168 (334)
T ss_pred             HHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence            33333335567899999999999999999999999999999999999999999999999999999999877431 11267


Q ss_pred             HHHHHHHhh---cCChhHHHHHHHHHHHHHhcCCCchHHHHHHHHHH
Q 046417          139 KPLIELILV---EQDVNSQVGGAMCLAAAIDAAPNPEVEQLRKLLPR  182 (595)
Q Consensus       139 ~PLi~aLl~---d~nk~VQ~~AA~cLaaviE~a~d~~~~~L~~Ll~r  182 (595)
                      ..|+-.|++   ..+.-|-..|=-||.+++..+..  ...|+.|.+.
T Consensus       169 d~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp--~~~L~~L~~~  213 (334)
T KOG2933|consen  169 DDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTP--QKLLRKLIPI  213 (334)
T ss_pred             HHHHHHHHhhhcccchHHHHHHHHHHHHHHhccCh--HHHHHHHHHH
Confidence            777777765   34556777888889999987543  2355555555

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []

Probab=97.43  E-value=0.00017  Score=50.62  Aligned_cols=31  Identities=23%  Similarity=0.334  Sum_probs=28.0

Q ss_pred             HHHHHHhhccCCChhHHHHHHHHHHHhhhhh
Q 046417           99 MISTVSCRLRDPDSSVRSACVAATTAMSLNI  129 (595)
Q Consensus        99 IL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l  129 (595)
                      |+|.+++.++|+++.||.+++++||.|++++
T Consensus         1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~~   31 (31)
T PF02985_consen    1 LLPILLQLLNDPSPEVRQAAAECLGAIAEHC   31 (31)
T ss_dssp             HHHHHHHHHT-SSHHHHHHHHHHHHHHHHTS
T ss_pred             CHHHHHHHcCCCCHHHHHHHHHHHHHHHhhC
Confidence            6899999999999999999999999999864

Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....

>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]

Probab=97.37  E-value=0.00088  Score=78.20  Aligned_cols=136  Identities=20%  Similarity=0.227  Sum_probs=117.9

Q ss_pred             HHHHHHHHhcCCCch-HHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHhhcccCcCcHHhHHHHHHHhccCCC---H
Q 046417          158 AMCLAAAIDAAPNPE-VEQLRKLLPRLGKAVRIEGFKAKAAVLGVIGSVVRVGGARSKGVLDWLVPCLVEFLCCDD---W  233 (595)
Q Consensus       158 A~cLaaviE~a~d~~-~~~L~~Ll~rL~klL~~~~~kaK~alLsAIgSlA~a~g~~~~~yl~~lmp~L~e~L~~dD---W  233 (595)
                      -.+|..++-+.+... .|.++.|+|-|+..|.-++..+|...+.+|..+..-.+.....++..++|.+...=.+.|   .
T Consensus       888 l~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t~~~~Tlvp~lLsls~~~~n~~~  967 (1030)
T KOG1967|consen  888 LEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQTEHLSTLVPYLLSLSSDNDNNMM  967 (1030)
T ss_pred             HHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccchHHHhHHHHHHHhcCCCCCcchh
Confidence            345788888876554 589999999999999999999998888888877766666567889999999998876654   7


Q ss_pred             HHHHHHHHHHHHHHHHhH-HhHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHhHhcCCC
Q 046417          234 ATRKAAAEVLGKVAVFDK-DLATEYKRSCLAALETRRFDKVKIVRETMNRSLEMWKEVPGV  293 (595)
Q Consensus       234 ~~RkaAaEaLgsIA~avg-e~f~py~~~~I~~Le~crfDKVK~VRda~~~aL~~~K~i~~~  293 (595)
                      .+|..|+.||+++.+.+. ..+.+|.+.+|+.|+-|--||...||.-+.++=|.|-.+...
T Consensus       968 ~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~tR~~W~~l~s~ 1028 (1030)
T KOG1967|consen  968 VVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDTRQNWYMLGSK 1028 (1030)
T ss_pred             HHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHHhhhhhhcccC
Confidence            899999999999999886 688889999999999999999999999999999999988754

>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.37  E-value=0.0052  Score=66.01  Aligned_cols=222  Identities=16%  Similarity=0.154  Sum_probs=137.0

Q ss_pred             HHHHHhhhcCCCChHHHHHHHHHHHHHh------C---CcCcHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccc
Q 046417           22 RVITCLNKLADRDTLPVATAELESIART------L---TQDSFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSL   92 (595)
Q Consensus        22 rvl~~L~KL~DrDT~r~A~~~LD~lA~~------L---~~~~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I   92 (595)
                      .++-.|.|-+|-|.+-.+...+-.||-.      |   .|..++.++...-    +..+.++=.+-.+|+.+|.-- ++.
T Consensus       211 pvLVsll~s~d~dvqyycttaisnIaVd~~~Rk~Laqaep~lv~~Lv~Lmd----~~s~kvkcqA~lALrnlasdt-~Yq  285 (550)
T KOG4224|consen  211 PVLVSLLKSGDLDVQYYCTTAISNIAVDRRARKILAQAEPKLVPALVDLMD----DGSDKVKCQAGLALRNLASDT-EYQ  285 (550)
T ss_pred             hhhhhhhccCChhHHHHHHHHhhhhhhhHHHHHHHHhcccchHHHHHHHHh----CCChHHHHHHHHHHhhhcccc-hhh
Confidence            4667788889999666666666555432      2   2334555544443    455788888889999887543 222


Q ss_pred             hhhHH-HHHHHHHhhccCCChhHHHHHHHHHHHhhhhhcCCcch---hccHHHHHHHhhcCChhHHHHHHHHHHHHHhcC
Q 046417           93 SPHLS-KMISTVSCRLRDPDSSVRSACVAATTAMSLNITKPSFS---VLSKPLIELILVEQDVNSQVGGAMCLAAAIDAA  168 (595)
Q Consensus        93 ~PhLp-kIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~~~~~~---~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a  168 (595)
                      .|-.. --+|.+++.|+||---.--|.+.++..++-+=..+..+   -|++||+..|--..+..+|.+|..-|-.+--..
T Consensus       286 ~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisihplNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAass  365 (550)
T KOG4224|consen  286 REIVEAGSLPLLVELLQSPMGPLILASVACIRNISIHPLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASS  365 (550)
T ss_pred             hHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccccCcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhh
Confidence            22111 12578888888886554445555555555332222223   299999999954455668888877655543321


Q ss_pred             CCchHHHHH-HHHHHHHHhhccCchhHHHHHHHHHHHHHHhhcccCcCcH--HhHHHHHHHhccCCCHHHHHHHHHHHHH
Q 046417          169 PNPEVEQLR-KLLPRLGKAVRIEGFKAKAAVLGVIGSVVRVGGARSKGVL--DWLVPCLVEFLCCDDWATRKAAAEVLGK  245 (595)
Q Consensus       169 ~d~~~~~L~-~Ll~rL~klL~~~~~kaK~alLsAIgSlA~a~g~~~~~yl--~~lmp~L~e~L~~dDW~~RkaAaEaLgs  245 (595)
                      ..-.-.+.+ --+|++..++-+....++.-+-.||+-++-.  ..+..||  ..++|.|++.+.+..-.+|.-|+++|+.
T Consensus       366 e~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~Lal~--d~~k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~N  443 (550)
T KOG4224|consen  366 EHNVSVIRESGAIPKLIELLLDGPVSVQSEISACIAQLALN--DNDKEALLDSGIIPILIPWTGSESEEVRGNAAAALIN  443 (550)
T ss_pred             hhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHHHHhc--cccHHHHhhcCCcceeecccCccchhhcccHHHHHHh
Confidence            111112222 2456777777777666776655666655432  2233333  3468889999999999999999999999


Q ss_pred             HHHHh
Q 046417          246 VAVFD  250 (595)
Q Consensus       246 IA~av  250 (595)
                      +..-+
T Consensus       444 lss~v  448 (550)
T KOG4224|consen  444 LSSDV  448 (550)
T ss_pred             hhhhh
Confidence            87655

>KOG1248 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.33  E-value=0.033  Score=67.01  Aligned_cols=231  Identities=15%  Similarity=0.119  Sum_probs=160.8

Q ss_pred             hHHHHHHHHHHHHHh-----CCcCcHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccchhhHHHHHHHHHhhccC
Q 046417           35 TLPVATAELESIART-----LTQDSFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPHLSKMISTVSCRLRD  109 (595)
Q Consensus        35 T~r~A~~~LD~lA~~-----L~~~~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~PhLpkIL~~IvrrLkD  109 (595)
                      +++=|...|+.+...     +-...+..+.+.|.+.+++...+.|+..+..|-.|-+.|+....-.+++.|+-++=.++|
T Consensus       670 vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k~I~EvIL~~Ke  749 (1176)
T KOG1248|consen  670 VQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIPKLIPEVILSLKE  749 (1176)
T ss_pred             HHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhccc
Confidence            666677778777766     333447777888888888888899999999999999999955666788888888888888


Q ss_pred             CChhH---HHHHHHHHHHhhhhhcC--Cc-c-h--hccHHHHHHHhhcCChhHHHHHHHHHHHHHhc-CCCchHHHHHHH
Q 046417          110 PDSSV---RSACVAATTAMSLNITK--PS-F-S--VLSKPLIELILVEQDVNSQVGGAMCLAAAIDA-APNPEVEQLRKL  179 (595)
Q Consensus       110 ~ds~V---R~Ac~~aLg~LA~~l~~--~~-~-~--~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~-a~d~~~~~L~~L  179 (595)
                      -+..-   +-+|..-+|++...+.+  ++ . +  .|+.-|..+|.++.. .+-.....|+..++.+ ......++++++
T Consensus       750 ~n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~-~~~as~Ivai~~il~e~~~~ld~~~l~~l  828 (1176)
T KOG1248|consen  750 VNVKARRNAFALLVFIGAIQSSLDDGNEPASAILNEFLSIISAGLVGDST-RVVASDIVAITHILQEFKNILDDETLEKL  828 (1176)
T ss_pred             ccHHHHhhHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHhhhcccHH-HHHHHHHHHHHHHHHHHhccccHHHHHHH
Confidence            87765   45566666643333322  22 1 2  266666666654432 2222224555555544 333335899999


Q ss_pred             HHHHHHhhccCchhHHHHHHHHHHHHHHhhc-ccCcCcHHhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhH-HhHHHH
Q 046417          180 LPRLGKAVRIEGFKAKAAVLGVIGSVVRVGG-ARSKGVLDWLVPCLVEFLCCDDWATRKAAAEVLGKVAVFDK-DLATEY  257 (595)
Q Consensus       180 l~rL~klL~~~~~kaK~alLsAIgSlA~a~g-~~~~~yl~~lmp~L~e~L~~dDW~~RkaAaEaLgsIA~avg-e~f~py  257 (595)
                      +.-+.-+|.+++.++..++|+.|..++..-. .-..++++.+||.+...+.+-.-..|+..--.|-.+..-.| +.+..|
T Consensus       829 i~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~LlekLirkfg~~eLe~~  908 (1176)
T KOG1248|consen  829 ISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHKIKVRKKVRLLLEKLIRKFGAEELESF  908 (1176)
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhCHHHHHhh
Confidence            9999999999999988888888887776543 23468889999999995555566788888888888877776 555555


Q ss_pred             HH-HHHHHHH
Q 046417          258 KR-SCLAALE  266 (595)
Q Consensus       258 ~~-~~I~~Le  266 (595)
                      ++ .-+++|.
T Consensus       909 ~pee~~klL~  918 (1176)
T KOG1248|consen  909 LPEEDMKLLT  918 (1176)
T ss_pred             CHHHHHHHHH
Confidence            54 3344444

>TIGR02270 conserved hypothetical protein

Probab=97.31  E-value=0.0035  Score=68.95  Aligned_cols=153  Identities=16%  Similarity=0.032  Sum_probs=102.6

Q ss_pred             HHHHHHHHhhc-cCCChhHHHHHHHHHHHhhhhhcCCcchhccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCCCchHHH
Q 046417           97 SKMISTVSCRL-RDPDSSVRSACVAATTAMSLNITKPSFSVLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNPEVEQ  175 (595)
Q Consensus        97 pkIL~~IvrrL-kD~ds~VR~Ac~~aLg~LA~~l~~~~~~~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d~~~~~  175 (595)
                      +..++.++..| .|+++.|+.+++.++.....     +  ..+..|+.+| .+.+..|..+++.+|..+-          
T Consensus        53 ~~a~~~L~~aL~~d~~~ev~~~aa~al~~~~~-----~--~~~~~L~~~L-~d~~~~vr~aaa~ALg~i~----------  114 (410)
T TIGR02270        53 KAATELLVSALAEADEPGRVACAALALLAQED-----A--LDLRSVLAVL-QAGPEGLCAGIQAALGWLG----------  114 (410)
T ss_pred             HhHHHHHHHHHhhCCChhHHHHHHHHHhccCC-----h--HHHHHHHHHh-cCCCHHHHHHHHHHHhcCC----------
Confidence            34566777777 57888888888777653332     1  1267788888 6777778888888776422          


Q ss_pred             HHHHHHHHHHhhccCchhHHHHHHHHHHHHHHhhcccCcCcHHhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhHHhHH
Q 046417          176 LRKLLPRLGKAVRIEGFKAKAAVLGVIGSVVRVGGARSKGVLDWLVPCLVEFLCCDDWATRKAAAEVLGKVAVFDKDLAT  255 (595)
Q Consensus       176 L~~Ll~rL~klL~~~~~kaK~alLsAIgSlA~a~g~~~~~yl~~lmp~L~e~L~~dDW~~RkaAaEaLgsIA~avge~f~  255 (595)
                      .+...+.|..+|++++..++.+++.+++-   -.    .    ...+.|...|.++|-.+|.+|+.+||.|....  ...
T Consensus       115 ~~~a~~~L~~~L~~~~p~vR~aal~al~~---r~----~----~~~~~L~~~L~d~d~~Vra~A~raLG~l~~~~--a~~  181 (410)
T TIGR02270       115 GRQAEPWLEPLLAASEPPGRAIGLAALGA---HR----H----DPGPALEAALTHEDALVRAAALRALGELPRRL--SES  181 (410)
T ss_pred             chHHHHHHHHHhcCCChHHHHHHHHHHHh---hc----c----ChHHHHHHHhcCCCHHHHHHHHHHHHhhcccc--chH
Confidence            23456677778888887788777766663   11    1    12356777777889999999999999885432  111


Q ss_pred             HHHHHHHHHHHhccCCchHHHHHHHHHHHHHhH
Q 046417          256 EYKRSCLAALETRRFDKVKIVRETMNRSLEMWK  288 (595)
Q Consensus       256 py~~~~I~~Le~crfDKVK~VRda~~~aL~~~K  288 (595)
                              .|...+.|.-+.||.+++.+|-..+
T Consensus       182 --------~L~~al~d~~~~VR~aA~~al~~lG  206 (410)
T TIGR02270       182 --------TLRLYLRDSDPEVRFAALEAGLLAG  206 (410)
T ss_pred             --------HHHHHHcCCCHHHHHHHHHHHHHcC
Confidence                    1233355888999999998886554

Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A

Probab=97.30  E-value=0.0022  Score=53.80  Aligned_cols=87  Identities=23%  Similarity=0.286  Sum_probs=63.6

Q ss_pred             HHHHHHhh-ccCchhHHHHHHHHHHHHHHhhcccCcCcHHhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhHHhHHHHH
Q 046417          180 LPRLGKAV-RIEGFKAKAAVLGVIGSVVRVGGARSKGVLDWLVPCLVEFLCCDDWATRKAAAEVLGKVAVFDKDLATEYK  258 (595)
Q Consensus       180 l~rL~klL-~~~~~kaK~alLsAIgSlA~a~g~~~~~yl~~lmp~L~e~L~~dDW~~RkaAaEaLgsIA~avge~f~py~  258 (595)
                      ++.|++.| ++++..+|..++.++|.+          .-+.++|.|.+.+.+++|.+|.+|+.+|+.|..  .+    ..
T Consensus         1 i~~L~~~l~~~~~~~vr~~a~~~L~~~----------~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~~--~~----~~   64 (88)
T PF13646_consen    1 IPALLQLLQNDPDPQVRAEAARALGEL----------GDPEAIPALIELLKDEDPMVRRAAARALGRIGD--PE----AI   64 (88)
T ss_dssp             HHHHHHHHHTSSSHHHHHHHHHHHHCC----------THHHHHHHHHHHHTSSSHHHHHHHHHHHHCCHH--HH----TH
T ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHHHc----------CCHhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC--HH----HH
Confidence            36677878 788899998888888721          124689999999999999999999999998842  11    12


Q ss_pred             HHHHHHHHhccCCchHHHHHHHHHHHH
Q 046417          259 RSCLAALETRRFDKVKIVRETMNRSLE  285 (595)
Q Consensus       259 ~~~I~~Le~crfDKVK~VRda~~~aL~  285 (595)
                      +.+++.   ++.|+-..||.++.++|.
T Consensus        65 ~~L~~~---l~~~~~~~vr~~a~~aL~   88 (88)
T PF13646_consen   65 PALIKL---LQDDDDEVVREAAAEALG   88 (88)
T ss_dssp             HHHHHH---HTC-SSHHHHHHHHHHHH
T ss_pred             HHHHHH---HcCCCcHHHHHHHHhhcC
Confidence            222223   445677899999999873

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1

Probab=97.29  E-value=0.0068  Score=58.83  Aligned_cols=146  Identities=16%  Similarity=0.064  Sum_probs=93.8

Q ss_pred             HHHHHHHHHHHhCCcCcHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccchhhHHHHHHHHHhhccCCChhHHHH
Q 046417           38 VATAELESIARTLTQDSFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPHLSKMISTVSCRLRDPDSSVRSA  117 (595)
Q Consensus        38 ~A~~~LD~lA~~L~~~~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~PhLpkIL~~IvrrLkD~ds~VR~A  117 (595)
                      -++-.|--|+..+| ..+.++++.|.....+++|.+|+.|+..|.-|.....-.+.+   .++..++..|.|+++.||..
T Consensus         7 n~i~~l~DL~~r~~-~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k~---~l~~~~l~~l~D~~~~Ir~~   82 (178)
T PF12717_consen    7 NAIIALGDLCIRYP-NLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVKG---QLFSRILKLLVDENPEIRSL   82 (178)
T ss_pred             HHHHHHHHHHHhCc-HHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeehh---hhhHHHHHHHcCCCHHHHHH
Confidence            35556666677674 457777777777777788999999999999988765544454   55667777889999999999


Q ss_pred             HHHHHHHhhhhhcCCcchhccHHHHHHHhhcC-Ch----hHHHHHHHHHHHHHhcCC-Cch-HHHHHHHHHHHHHhh
Q 046417          118 CVAATTAMSLNITKPSFSVLSKPLIELILVEQ-DV----NSQVGGAMCLAAAIDAAP-NPE-VEQLRKLLPRLGKAV  187 (595)
Q Consensus       118 c~~aLg~LA~~l~~~~~~~~l~PLi~aLl~d~-nk----~VQ~~AA~cLaaviE~a~-d~~-~~~L~~Ll~rL~klL  187 (595)
                      |...+..++.......+...+..++..|.+.. .+    .-...--.-+.-+++... +.. ...+++||.|+....
T Consensus        83 A~~~~~e~~~~~~~~~i~~~~~e~i~~l~~~~~~~~~~~~~~~~~~~I~~fll~~i~~d~~~~~l~~kl~~~~~~~~  159 (178)
T PF12717_consen   83 ARSFFSELLKKRNPNIIYNNFPELISSLNNCYEHPVYGPLSREKRKKIYKFLLDFIDKDKQKESLVEKLCQRFLNAV  159 (178)
T ss_pred             HHHHHHHHHHhccchHHHHHHHHHHHHHhCccccccccccCHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHc
Confidence            99999888876422222346777777773211 11    111111122344555544 322 345566777766554

>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []

Probab=97.29  E-value=0.033  Score=59.05  Aligned_cols=192  Identities=17%  Similarity=0.215  Sum_probs=120.4

Q ss_pred             HHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHc--cccchhhHHHHHHHHHhhccCCChhHHHHHHHHHHHhhhhhc--
Q 046417           55 FSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSH--GDSLSPHLSKMISTVSCRLRDPDSSVRSACVAATTAMSLNIT--  130 (595)
Q Consensus        55 lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~--gd~I~PhLpkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~--  130 (595)
                      |.-++..+.+.    +...|++++..|-.+-..+  .+++..+...|+..+.+.++=..+.=+..++.+++-++-.+.  
T Consensus        45 L~~~Id~l~eK----~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g  120 (309)
T PF05004_consen   45 LKEAIDLLTEK----SSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAG  120 (309)
T ss_pred             HHHHHHHHHhc----CHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCC
Confidence            44455555543    3789999999988777666  489999999999999999998877656677778888886653  


Q ss_pred             CCc--chh-ccHHHHHHHhhcCChhHHH--HH--HHHHHHHHhcCCCchHHHHHHHHHHHHHh--hccC----------c
Q 046417          131 KPS--FSV-LSKPLIELILVEQDVNSQV--GG--AMCLAAAIDAAPNPEVEQLRKLLPRLGKA--VRIE----------G  191 (595)
Q Consensus       131 ~~~--~~~-~l~PLi~aLl~d~nk~VQ~--~A--A~cLaaviE~a~d~~~~~L~~Ll~rL~kl--L~~~----------~  191 (595)
                      ...  ... +.++|...+ .+....++.  .+  |+++..++-........-+-+.|.-++..  ++..          .
T Consensus       121 ~~~~ei~~~~~~~L~~~l-~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~  199 (309)
T PF05004_consen  121 EDSEEIFEELKPVLKRIL-TDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDD  199 (309)
T ss_pred             ccHHHHHHHHHHHHHHHH-hCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCc
Confidence            111  112 334444444 555444443  22  33444555332221111111334422221  1111          2


Q ss_pred             hhHHHHHHHHHHHHHHhhcc-cCcCcHHhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhH
Q 046417          192 FKAKAAVLGVIGSVVRVGGA-RSKGVLDWLVPCLVEFLCCDDWATRKAAAEVLGKVAVFDK  251 (595)
Q Consensus       192 ~kaK~alLsAIgSlA~a~g~-~~~~yl~~lmp~L~e~L~~dDW~~RkaAaEaLgsIA~avg  251 (595)
                      ..+..++|.+-+-++..... ....+++..+|.|.++|.++|-.+|.+|-|+|+.|-....
T Consensus       200 ~~l~~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~~  260 (309)
T PF05004_consen  200 AALVAAALSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLYELAR  260 (309)
T ss_pred             cHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhh
Confidence            34667777777766653221 2235567889999999999999999999999998876554

The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].

>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]

Probab=97.27  E-value=0.0011  Score=70.44  Aligned_cols=223  Identities=16%  Similarity=0.176  Sum_probs=144.8

Q ss_pred             HHHHHHHHHHhC--------CcCcHHHHHHhhhhcCCCCChHHHHHHHHHHHHHH---HHccccchh--hHHHHHHHHHh
Q 046417           39 ATAELESIARTL--------TQDSFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLS---RSHGDSLSP--HLSKMISTVSC  105 (595)
Q Consensus        39 A~~~LD~lA~~L--------~~~~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lA---Eg~gd~I~P--hLpkIL~~Ivr  105 (595)
                      |+=.|-.+|..-        +...+|.|++.|.+.    .-.+|+.++-+||.+|   ++|-|++..  -|..++..+..
T Consensus       135 AaWalTNiaSGtt~QTkvVvd~~AVPlfiqlL~s~----~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~s  210 (526)
T COG5064         135 AAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSST----EDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLS  210 (526)
T ss_pred             HHHHHhhhccCcccceEEEEeCCchHHHHHHHcCc----hHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHh
Confidence            555566666532        345589999888864    4589999999999997   577787743  35555554441


Q ss_pred             hccCCC-hhHHHHHHHHHHHhhhhhcCCcc---hhccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCCCchHHHHHH-HH
Q 046417          106 RLRDPD-SSVRSACVAATTAMSLNITKPSF---SVLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNPEVEQLRK-LL  180 (595)
Q Consensus       106 rLkD~d-s~VR~Ac~~aLg~LA~~l~~~~~---~~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d~~~~~L~~-Ll  180 (595)
                        .-++ +.+|.++ |+|.-|++----+|.   +....|++.-|+-.-++.+-..||-|+.-+.++..+.+...+.- ++
T Consensus       211 --s~~~ismlRn~T-WtLSNlcRGknP~P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~  287 (526)
T COG5064         211 --SAIHISMLRNAT-WTLSNLCRGKNPPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIP  287 (526)
T ss_pred             --ccchHHHHHHhH-HHHHHhhCCCCCCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCc
Confidence              1122 3456655 899888864322222   23455666666567788899999999999888765555445543 78


Q ss_pred             HHHHHhhccCchhHHHHHHHHHHHHHHhhcccCcCcH-HhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhHH---hH--
Q 046417          181 PRLGKAVRIEGFKAKAAVLGVIGSVVRVGGARSKGVL-DWLVPCLVEFLCCDDWATRKAAAEVLGKVAVFDKD---LA--  254 (595)
Q Consensus       181 ~rL~klL~~~~~kaK~alLsAIgSlA~a~g~~~~~yl-~~lmp~L~e~L~~dDW~~RkaAaEaLgsIA~avge---~f--  254 (595)
                      +||+.+|.+++.+++.-+|..||.|+.-...-..-.+ -..++.+...|++.--..||.||=+|+.|...--+   .+  
T Consensus       288 ~RLvElLs~~sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNITAGnteqiqavid  367 (526)
T COG5064         288 GRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNITAGNTEQIQAVID  367 (526)
T ss_pred             HHHHHHhcCccccccCHHHHhhcCeeecCccceehheecccHHHHHHHhcChhhhhhhhhheeecccccCCHHHHHHHHh
Confidence            9999999999999988888888877643222111111 12456666668877669999999999988542211   11  


Q ss_pred             HHHHHHHHHHHHhc
Q 046417          255 TEYKRSCLAALETR  268 (595)
Q Consensus       255 ~py~~~~I~~Le~c  268 (595)
                      ...+++.+..|+..
T Consensus       368 ~nliPpLi~lls~a  381 (526)
T COG5064         368 ANLIPPLIHLLSSA  381 (526)
T ss_pred             cccchHHHHHHHHH
Confidence            11345566666644

>PF13251 DUF4042: Domain of unknown function (DUF4042)

Probab=97.20  E-value=0.0032  Score=62.05  Aligned_cols=136  Identities=24%  Similarity=0.375  Sum_probs=100.7

Q ss_pred             HHHHHHHHHHHHHHH-ccccchhhHHHHHHHH------------HhhccCCChhHHHHHHHHHHHhhhhhcC--------
Q 046417           73 VRKQCVNLLTLLSRS-HGDSLSPHLSKMISTV------------SCRLRDPDSSVRSACVAATTAMSLNITK--------  131 (595)
Q Consensus        73 vRKaaI~lLG~lAEg-~gd~I~PhLpkIL~~I------------vrrLkD~ds~VR~Ac~~aLg~LA~~l~~--------  131 (595)
                      +|-+++.+|..++.. -+..+..|++.++|..            .-.++||++.||.+++.++..|=+..-.        
T Consensus         2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~   81 (182)
T PF13251_consen    2 VRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEES   81 (182)
T ss_pred             hhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhc
Confidence            577777777777777 4466677777777644            4557899999999999999887643210        


Q ss_pred             --C--cchh-----------ccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCCCch--HHHHHHHHHHHHHhhccCchhH
Q 046417          132 --P--SFSV-----------LSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNPE--VEQLRKLLPRLGKAVRIEGFKA  194 (595)
Q Consensus       132 --~--~~~~-----------~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d~~--~~~L~~Ll~rL~klL~~~~~ka  194 (595)
                        .  .|..           +=.-|+.+|..+++..+.....-||+.+|++.++.-  .+++.+++..+..++.+.+..+
T Consensus        82 ~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~v  161 (182)
T PF13251_consen   82 KGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPNV  161 (182)
T ss_pred             CCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCcH
Confidence              0  1111           223344455457787888888999999999986543  4799999999999999988889


Q ss_pred             HHHHHHHHHHHHHh
Q 046417          195 KAAVLGVIGSVVRV  208 (595)
Q Consensus       195 K~alLsAIgSlA~a  208 (595)
                      +.+.+.++|.++.+
T Consensus       162 ~v~~l~~~~~l~s~  175 (182)
T PF13251_consen  162 RVAALSCLGALLSV  175 (182)
T ss_pred             HHHHHHHHHHHHcC
Confidence            99999999988865

>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]

Probab=97.12  E-value=0.0035  Score=70.81  Aligned_cols=206  Identities=17%  Similarity=0.112  Sum_probs=149.1

Q ss_pred             hHHHHHHHHHHHHHhCCcCc-HHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccchhhHHHHHHHHHhhccCCChh
Q 046417           35 TLPVATAELESIARTLTQDS-FSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPHLSKMISTVSCRLRDPDSS  113 (595)
Q Consensus        35 T~r~A~~~LD~lA~~L~~~~-lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~PhLpkIL~~IvrrLkD~ds~  113 (595)
                      .++.++.-|-.-|.++++.. +..+|+.+-+.-  -+-..|.-.+.++--+--+.+|...||..+|+-.+-..|-|+|..
T Consensus       184 mR~~~lRiLtdkav~fg~~~vfnkvLp~lm~r~--LeDqerhl~vk~idr~Ly~lddl~~pyvhkILvVv~pllided~~  261 (975)
T COG5181         184 MRMEGLRILTDKAVNFGAAAVFNKVLPMLMSRE--LEDQERHLVVKLIDRLLYGLDDLKVPYVHKILVVVGPLLIDEDLK  261 (975)
T ss_pred             hhHHHHHHHHHHhhcccHHHHHHHHHHHHHhhh--hhhhhhHhHHHHHHHHHHhcccccccceeeEEEEeeccccCccHH
Confidence            56678888877888888766 778888876642  233578888899888999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhhhcCCcchhccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHhhccCch
Q 046417          114 VRSACVAATTAMSLNITKPSFSVLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPN-PEVEQLRKLLPRLGKAVRIEGF  192 (595)
Q Consensus       114 VR~Ac~~aLg~LA~~l~~~~~~~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d-~~~~~L~~Ll~rL~klL~~~~~  192 (595)
                      +|.--.+-+..|+..+.-...++-+.|=+    ...+++|...-+.|.+.+....+. .+.|+|+.+|.    --  .+.
T Consensus       262 ~r~~g~eii~nL~~~~Gl~~~vs~mrpDi----~~~deYVRnvt~ra~~vva~algv~~llpfl~a~c~----Sr--kSw  331 (975)
T COG5181         262 RRCMGREIILNLVYRCGLGFSVSSMRPDI----TSKDEYVRNVTGRAVGVVADALGVEELLPFLEALCG----SR--KSW  331 (975)
T ss_pred             HhcccHHHHHHHHHHhccceeeeeccCCc----ccccHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHhc----Cc--cch
Confidence            98776666666665542110001222211    345778877777776777766532 12334433332    11  366


Q ss_pred             hHHHHHHHHHHHHHHhhcccCcCcHHhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhHH
Q 046417          193 KAKAAVLGVIGSVVRVGGARSKGVLDWLVPCLVEFLCCDDWATRKAAAEVLGKVAVFDKD  252 (595)
Q Consensus       193 kaK~alLsAIgSlA~a~g~~~~~yl~~lmp~L~e~L~~dDW~~RkaAaEaLgsIA~avge  252 (595)
                      +++-.-|.++.-|+.-.|..-.+|+..+|.+|..+|.|+.-.+|..++.+|+++|..+|.
T Consensus       332 ~aRhTgiri~qqI~~llG~s~l~hl~~l~~ci~~~l~D~~~~vRi~tA~alS~lae~~~P  391 (975)
T COG5181         332 EARHTGIRIAQQICELLGRSRLSHLGPLLKCISKLLKDRSRFVRIDTANALSYLAELVGP  391 (975)
T ss_pred             hhhchhhHHHHHHHHHhCccHHhhhhhHHHHHHHHhhccceeeeehhHhHHHHHHHhcCC
Confidence            666667777777777666666799999999999999999999999999999999998864

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []

Probab=96.94  E-value=0.0011  Score=46.45  Aligned_cols=30  Identities=40%  Similarity=0.515  Sum_probs=27.0

Q ss_pred             HHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Q 046417          220 LVPCLVEFLCCDDWATRKAAAEVLGKVAVF  249 (595)
Q Consensus       220 lmp~L~e~L~~dDW~~RkaAaEaLgsIA~a  249 (595)
                      ++|.+.+.+.|++|.+|.+|+.+|+.|+..
T Consensus         1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~   30 (31)
T PF02985_consen    1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH   30 (31)
T ss_dssp             HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence            589999999999999999999999999864

Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....

>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]

Probab=96.89  E-value=0.19  Score=60.30  Aligned_cols=259  Identities=15%  Similarity=0.152  Sum_probs=147.9

Q ss_pred             HHHHHHhhhcCCCCh--HHHHHHHHHHHHHhCCcCcHHHHHHhhhh----cCCCCChHHHHHHHHHHHHHHHHccccchh
Q 046417           21 QRVITCLNKLADRDT--LPVATAELESIARTLTQDSFSSFLNCLQT----TDSSSKSPVRKQCVNLLTLLSRSHGDSLSP   94 (595)
Q Consensus        21 ~rvl~~L~KL~DrDT--~r~A~~~LD~lA~~L~~~~lp~fL~~L~d----~~ss~kp~vRKaaI~lLG~lAEg~gd~I~P   94 (595)
                      --+...|.-|.|.||  +-.|+..+-.++..||.+.....+.-+.+    ...+.-|-   .++++||.+|..  ..+.|
T Consensus       341 ~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~~Lad~vi~svid~~~p~e~~~aWH---gacLaLAELA~r--GlLlp  415 (1133)
T KOG1943|consen  341 FVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPPELADQVIGSVIDLFNPAEDDSAWH---GACLALAELALR--GLLLP  415 (1133)
T ss_pred             HHHHHHHHhccCCcchhhHHHHHHHHHHHccCcHHHHHHHHHHHHHhcCcCCchhHHH---HHHHHHHHHHhc--CCcch
Confidence            334455666778885  57899999999999996554444444433    21111233   888887777642  22344


Q ss_pred             -hHHHHHHHHHhhccCC--------ChhHHHHHHHHHHHhhhhhcCCcchhccHHHHHHHhh----cCChhHHHHHHHHH
Q 046417           95 -HLSKMISTVSCRLRDP--------DSSVRSACVAATTAMSLNITKPSFSVLSKPLIELILV----EQDVNSQVGGAMCL  161 (595)
Q Consensus        95 -hLpkIL~~IvrrLkD~--------ds~VR~Ac~~aLg~LA~~l~~~~~~~~l~PLi~aLl~----d~nk~VQ~~AA~cL  161 (595)
                       -++.|+|.|++.|.=.        ...||+|+|..+=++++-........++..|+.+|+.    |.+-++--+|+.||
T Consensus       416 s~l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAAsAAl  495 (1133)
T KOG1943|consen  416 SLLEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAASAAL  495 (1133)
T ss_pred             HHHHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHHHHH
Confidence             4788999999887533        3569999999998888866422111244445555543    67777777888777


Q ss_pred             HHHHhcC---CCch--H--------------------------HHHHHHHHHHHHh-hccCchhHHHHHHHHHHHHHHhh
Q 046417          162 AAAIDAA---PNPE--V--------------------------EQLRKLLPRLGKA-VRIEGFKAKAAVLGVIGSVVRVG  209 (595)
Q Consensus       162 aaviE~a---~d~~--~--------------------------~~L~~Ll~rL~kl-L~~~~~kaK~alLsAIgSlA~a~  209 (595)
                      ...|---   +..+  .                          .|.+.+..++..- +-+=+.+.|....-++.-+..-.
T Consensus       496 qE~VGR~~n~p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~L~t~Kv~HWd~~irelaa~aL~~Ls~~~  575 (1133)
T KOG1943|consen  496 QENVGRQGNFPHGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNHLLTKKVCHWDVKIRELAAYALHKLSLTE  575 (1133)
T ss_pred             HHHhccCCCCCCchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhh
Confidence            7766331   1110  0                          1122222222211 11113335555544555444322


Q ss_pred             cccCcCcHH-hHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhH--HhHHHH-----H---HHHHHHHHhccCCch--HHH
Q 046417          210 GARSKGVLD-WLVPCLVEFLCCDDWATRKAAAEVLGKVAVFDK--DLATEY-----K---RSCLAALETRRFDKV--KIV  276 (595)
Q Consensus       210 g~~~~~yl~-~lmp~L~e~L~~dDW~~RkaAaEaLgsIA~avg--e~f~py-----~---~~~I~~Le~crfDKV--K~V  276 (595)
                          +.|+. ..+|.|....-..|-..|....-+.|.|..+..  +.+..+     .   .+.+.-+...+|++=  ...
T Consensus       576 ----pk~~a~~~L~~lld~~ls~~~~~r~g~~la~~ev~~~~~~l~~~~~~l~e~~i~~l~~ii~~~~~~~~~rg~~~lm  651 (1133)
T KOG1943|consen  576 ----PKYLADYVLPPLLDSTLSKDASMRHGVFLAAGEVIGALRKLEPVIKGLDENRIAGLLSIIPPICDRYFYRGQGTLM  651 (1133)
T ss_pred             ----HHhhcccchhhhhhhhcCCChHHhhhhHHHHHHHHHHhhhhhhhhhhhHHHHhhhhhhhccHHHHHHhccchHHHH
Confidence                23332 456667777667777889999999988877653  211111     1   223444555555555  456


Q ss_pred             HHHHHHHHHHhH
Q 046417          277 RETMNRSLEMWK  288 (595)
Q Consensus       277 Rda~~~aL~~~K  288 (595)
                      |.++...++.+.
T Consensus       652 r~~~~~~Ie~~s  663 (1133)
T KOG1943|consen  652 RQATLKFIEQLS  663 (1133)
T ss_pred             HHHHHHHHHHhh
Confidence            666665555443

>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function

Probab=96.89  E-value=0.014  Score=60.36  Aligned_cols=195  Identities=16%  Similarity=0.159  Sum_probs=127.9

Q ss_pred             hCCcCcHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHcc---ccchhhHHHHHHHHHhhccCCChhHHHHHHHHHHHh
Q 046417           49 TLTQDSFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHG---DSLSPHLSKMISTVSCRLRDPDSSVRSACVAATTAM  125 (595)
Q Consensus        49 ~L~~~~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~g---d~I~PhLpkIL~~IvrrLkD~ds~VR~Ac~~aLg~L  125 (595)
                      .|+++.+..++.+|..+   .+|..++.++.++|..|. ++   +.|.. + ..++.|...|.+|++.||.-++++|..|
T Consensus         8 ~l~~~~l~~Ll~lL~~t---~dp~i~e~al~al~n~aa-f~~nq~~Ir~-~-Ggi~lI~~lL~~p~~~vr~~AL~aL~Nl   81 (254)
T PF04826_consen    8 ILEAQELQKLLCLLEST---EDPFIQEKALIALGNSAA-FPFNQDIIRD-L-GGISLIGSLLNDPNPSVREKALNALNNL   81 (254)
T ss_pred             CcCHHHHHHHHHHHhcC---CChHHHHHHHHHHHhhcc-ChhHHHHHHH-c-CCHHHHHHHcCCCChHHHHHHHHHHHhc
Confidence            36677788888888753   579999999999999754 32   22221 1 3477899999999999999999999998


Q ss_pred             hhhhcCCcch-hccHHHHHHHhhc-CChhHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhccCchhHHHHHHHHHH
Q 046417          126 SLNITKPSFS-VLSKPLIELILVE-QDVNSQVGGAMCLAAAIDAAPNPEVEQLRKLLPRLGKAVRIEGFKAKAAVLGVIG  203 (595)
Q Consensus       126 A~~l~~~~~~-~~l~PLi~aLl~d-~nk~VQ~~AA~cLaaviE~a~d~~~~~L~~Ll~rL~klL~~~~~kaK~alLsAIg  203 (595)
                      +.....+..+ .|+..+.+.+... -|..+|.++-.+|..+.  ..+..-..+...++.|+.+|...+-++|..++.++.
T Consensus        82 s~~~en~~~Ik~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLt--v~~~~~~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~  159 (254)
T PF04826_consen   82 SVNDENQEQIKMYIPQVCEETVSSPLNSEVQLAGLRLLTNLT--VTNDYHHMLANYIPDLLSLLSSGSEKTKVQVLKVLV  159 (254)
T ss_pred             CCChhhHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHccC--CCcchhhhHHhhHHHHHHHHHcCChHHHHHHHHHHH
Confidence            8655322222 3777777766543 47789988777777763  222223456667888889999888889999998888


Q ss_pred             HHHHhhcccCcCcHHhHHHHHHHhccC-CCHHHHHHHHHHHHHHHHHhH
Q 046417          204 SVVRVGGARSKGVLDWLVPCLVEFLCC-DDWATRKAAAEVLGKVAVFDK  251 (595)
Q Consensus       204 SlA~a~g~~~~~yl~~lmp~L~e~L~~-dDW~~RkaAaEaLgsIA~avg  251 (595)
                      -++.-......-+-...++.+...+.. .+-.....++..+..|-...+
T Consensus       160 nLS~np~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~  208 (254)
T PF04826_consen  160 NLSENPDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINENIK  208 (254)
T ss_pred             HhccCHHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHhhC
Confidence            777521110000012234555544443 344555556666666655553

>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter

Probab=96.72  E-value=0.016  Score=57.21  Aligned_cols=113  Identities=21%  Similarity=0.256  Sum_probs=85.5

Q ss_pred             HHHHHHHHhhc---cC-chhHHHHHHHHHHHHHHhhcccCcCcHHhHHHHHHHhccCCCHHHHHHHHHHHHHH---HHHh
Q 046417          178 KLLPRLGKAVR---IE-GFKAKAAVLGVIGSVVRVGGARSKGVLDWLVPCLVEFLCCDDWATRKAAAEVLGKV---AVFD  250 (595)
Q Consensus       178 ~Ll~rL~klL~---~~-~~kaK~alLsAIgSlA~a~g~~~~~yl~~lmp~L~e~L~~dDW~~RkaAaEaLgsI---A~av  250 (595)
                      .++|-|+.=|.   ++ .|-+...+.+.+..   .++....|.++++++.|...|...|-.+..+++.+|..+   ...+
T Consensus        38 ~~Lpif~dGL~Et~~Py~flA~~g~~dll~~---~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~v  114 (183)
T PF10274_consen   38 HYLPIFFDGLRETEHPYRFLARQGIKDLLER---GGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDMV  114 (183)
T ss_pred             hHHHHHHhhhhccCccHHHHHHHHHHHHHHh---cchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhh
Confidence            45555554443   22 44455555455443   244456799999999999999999999999999999999   6678


Q ss_pred             HHhHHHHHHHHHHHHH---hcc--------CCchHHHHHHHHHHHHHhHhcCCC
Q 046417          251 KDLATEYKRSCLAALE---TRR--------FDKVKIVRETMNRSLEMWKEVPGV  293 (595)
Q Consensus       251 ge~f~py~~~~I~~Le---~cr--------fDKVK~VRda~~~aL~~~K~i~~~  293 (595)
                      |+.+.||..+++.+|.   +++        |.+-+-++|.+.++|+++-+-.|.
T Consensus       115 G~aLvPyyrqLLp~ln~f~~k~~n~gd~i~y~~~~~~~dlI~etL~~lE~~GG~  168 (183)
T PF10274_consen  115 GEALVPYYRQLLPVLNLFKNKNVNLGDGIDYRKRKNLGDLIQETLELLERNGGP  168 (183)
T ss_pred             hHHHHHHHHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHhcCh
Confidence            9999999888877776   333        456689999999999999887765

The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B

Probab=96.70  E-value=0.0026  Score=49.55  Aligned_cols=54  Identities=30%  Similarity=0.188  Sum_probs=49.8

Q ss_pred             HHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHH
Q 046417          233 WATRKAAAEVLGKVAVFDKDLATEYKRSCLAALETRRFDKVKIVRETMNRSLEM  286 (595)
Q Consensus       233 W~~RkaAaEaLgsIA~avge~f~py~~~~I~~Le~crfDKVK~VRda~~~aL~~  286 (595)
                      |.+|.+|+.+||.++...++.+.+|.+.+++.|..+--|.-..||.++..||..
T Consensus         1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~   54 (55)
T PF13513_consen    1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGN   54 (55)
T ss_dssp             HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHC
T ss_pred             CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhc
Confidence            899999999999999888999999999999999988888888999999999863

...

>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II

Probab=96.57  E-value=0.23  Score=51.64  Aligned_cols=197  Identities=18%  Similarity=0.135  Sum_probs=116.6

Q ss_pred             HhhhhcCCCCChHHHHHHHHHHHHHHHHcc-ccc-hhhHHHHHHHHHhhccCCChhHHHHHHHHHHHhhhhhc--CC---
Q 046417           60 NCLQTTDSSSKSPVRKQCVNLLTLLSRSHG-DSL-SPHLSKMISTVSCRLRDPDSSVRSACVAATTAMSLNIT--KP---  132 (595)
Q Consensus        60 ~~L~d~~ss~kp~vRKaaI~lLG~lAEg~g-d~I-~PhLpkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~--~~---  132 (595)
                      ..|.++..++++..|..++.+|+.+.+..+ +.+ ..++.-|+.++..+|.|... |..| ..++.+|...-.  ..   
T Consensus         2 ~~Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl~D~~~-~~~~-l~gl~~L~~~~~~~~~~~~   79 (262)
T PF14500_consen    2 QSLGEYLTSEDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRLDDHAC-VQPA-LKGLLALVKMKNFSPESAV   79 (262)
T ss_pred             cchhhhhCCCCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHhccHhh-HHHH-HHHHHHHHhCcCCChhhHH
Confidence            356778888899999999999999999887 555 55788899999999966554 4444 666666663211  00   


Q ss_pred             -------------cc--h--hccHHHHHHHhhcCChhHHHH---HHHHHHHHHhcCCCch-HHHHHHHHHHHHHhhc---
Q 046417          133 -------------SF--S--VLSKPLIELILVEQDVNSQVG---GAMCLAAAIDAAPNPE-VEQLRKLLPRLGKAVR---  188 (595)
Q Consensus       133 -------------~~--~--~~l~PLi~aLl~d~nk~VQ~~---AA~cLaaviE~a~d~~-~~~L~~Ll~rL~klL~---  188 (595)
                                   ..  .  ..+--|+..|+.+....++..   -...+-.++++..|+- +-+.=+|.+.+.+.+.   
T Consensus        80 ~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~~~~  159 (262)
T PF14500_consen   80 KILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFDISE  159 (262)
T ss_pred             HHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccch
Confidence                         00  0  022233444433221122211   1222334555555542 2222334444443331   


Q ss_pred             ---------------------cCchh-----HHHHHHHHHHHHHHhhcccCcCcHHhHHHHHHHhccCCCHHHHHHHHHH
Q 046417          189 ---------------------IEGFK-----AKAAVLGVIGSVVRVGGARSKGVLDWLVPCLVEFLCCDDWATRKAAAEV  242 (595)
Q Consensus       189 ---------------------~~~~k-----aK~alLsAIgSlA~a~g~~~~~yl~~lmp~L~e~L~~dDW~~RkaAaEa  242 (595)
                                           ++.++     .|.++..|+.+        .+.|.+.++|.|.+.|.++.-.++.-++++
T Consensus       160 ~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s--------~~~fa~~~~p~LleKL~s~~~~~K~D~L~t  231 (262)
T PF14500_consen  160 FAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSS--------TPLFAPFAFPLLLEKLDSTSPSVKLDSLQT  231 (262)
T ss_pred             hHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcC--------cHhhHHHHHHHHHHHHcCCCcHHHHHHHHH
Confidence                                 11111     33333333331        345567899999999998887888888888


Q ss_pred             HHHHHHHhH-HhHHHHHHHHHHHHH
Q 046417          243 LGKVAVFDK-DLATEYKRSCLAALE  266 (595)
Q Consensus       243 LgsIA~avg-e~f~py~~~~I~~Le  266 (595)
                      |..-....| +.+.+|...+...|.
T Consensus       232 L~~c~~~y~~~~~~~~~~~iw~~lk  256 (262)
T PF14500_consen  232 LKACIENYGADSLSPHWSTIWNALK  256 (262)
T ss_pred             HHHHHHHCCHHHHHHHHHHHHHHHH
Confidence            888777776 578888777655543

>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=96.41  E-value=0.18  Score=62.40  Aligned_cols=147  Identities=19%  Similarity=0.279  Sum_probs=104.1

Q ss_pred             CCChHHHHHHHHHHHHHhCC-cCcHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccchhhHHHHHHHHHhhccCC
Q 046417           32 DRDTLPVATAELESIARTLT-QDSFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPHLSKMISTVSCRLRDP  110 (595)
Q Consensus        32 DrDT~r~A~~~LD~lA~~L~-~~~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~PhLpkIL~~IvrrLkD~  110 (595)
                      |+|+.+..+..|-.   .-+ ...+..+|..|.....++....|--|+++|..++|.=+..+.  .+.+-..|..|+.|+
T Consensus       793 d~~~a~li~~~la~---~r~f~~sfD~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~--~~dvq~~Vh~R~~Ds  867 (1692)
T KOG1020|consen  793 DDDDAKLIVFYLAH---ARSFSQSFDPYLKLILSVLGENAIALRTKALKCLSMIVEADPSVLS--RPDVQEAVHGRLNDS  867 (1692)
T ss_pred             cchhHHHHHHHHHh---hhHHHHhhHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhhc--CHHHHHHHHHhhccc
Confidence            55666655555432   222 223778888888777777899999999999999998775442  247888999999999


Q ss_pred             ChhHHHHHHHHHHHhhhhhcCCcch-hccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhc
Q 046417          111 DSSVRSACVAATTAMSLNITKPSFS-VLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNPEVEQLRKLLPRLGKAVR  188 (595)
Q Consensus       111 ds~VR~Ac~~aLg~LA~~l~~~~~~-~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d~~~~~L~~Ll~rL~klL~  188 (595)
                      ..+||+|+++=+|++.-...  ..+ -|..-+++-++ |..-.|-..+.--|..+||+-++..  ....+|.+++.-.+
T Consensus       868 sasVREAaldLvGrfvl~~~--e~~~qyY~~i~erIl-DtgvsVRKRvIKIlrdic~e~pdf~--~i~~~cakmlrRv~  941 (1692)
T KOG1020|consen  868 SASVREAALDLVGRFVLSIP--ELIFQYYDQIIERIL-DTGVSVRKRVIKILRDICEETPDFS--KIVDMCAKMLRRVN  941 (1692)
T ss_pred             hhHHHHHHHHHHhhhhhccH--HHHHHHHHHHHhhcC-CCchhHHHHHHHHHHHHHHhCCChh--hHHHHHHHHHHHhc
Confidence            99999999999999886542  222 26777777773 5666677788887888888765533  44445555444443

>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.22  E-value=0.23  Score=58.13  Aligned_cols=81  Identities=11%  Similarity=0.067  Sum_probs=54.9

Q ss_pred             HHHHHHHhCCcCcHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccchhhHHHHHHHHHhhccCCChhHHHHHHHH
Q 046417           42 ELESIARTLTQDSFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPHLSKMISTVSCRLRDPDSSVRSACVAA  121 (595)
Q Consensus        42 ~LD~lA~~L~~~~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~PhLpkIL~~IvrrLkD~ds~VR~Ac~~a  121 (595)
                      +|-.+..-.++|..+-+.+.+.+-.++.++.+||-|+++.--+-+-.++.+    .-+++...++|+|.+..|--+.+.-
T Consensus       127 AL~alg~i~s~EmardlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l~----e~f~~~~~~lL~ek~hGVL~~~l~l  202 (866)
T KOG1062|consen  127 ALCALGNICSPEMARDLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPDLV----EHFVIAFRKLLCEKHHGVLIAGLHL  202 (866)
T ss_pred             HHHHhhccCCHHHhHHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchHH----HHhhHHHHHHHhhcCCceeeeHHHH
Confidence            455566666777788888888887778888888888888666666555533    3345566677888887776555544


Q ss_pred             HHHhh
Q 046417          122 TTAMS  126 (595)
Q Consensus       122 Lg~LA  126 (595)
                      +..|+
T Consensus       203 ~~e~c  207 (866)
T KOG1062|consen  203 ITELC  207 (866)
T ss_pred             HHHHH
Confidence            44444

>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1

Probab=96.20  E-value=0.023  Score=51.50  Aligned_cols=58  Identities=16%  Similarity=0.319  Sum_probs=53.2

Q ss_pred             HHHHHHHHHHHHHHHHccccchhhHHHHHHHHHhhccCCChhHHHHHHHHHHHhhhhhcC
Q 046417           72 PVRKQCVNLLTLLSRSHGDSLSPHLSKMISTVSCRLRDPDSSVRSACVAATTAMSLNITK  131 (595)
Q Consensus        72 ~vRKaaI~lLG~lAEg~gd~I~PhLpkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~~  131 (595)
                      ..|+.++++++.+.+.+|.++..++|+|+.++...|..++  +|..|+.+...|...+.+
T Consensus        30 ~ek~~~i~ai~~lI~~~g~~i~~a~pQI~acL~saL~~~e--L~~~al~~W~~~i~~L~~   87 (107)
T smart00802       30 NEKKRALRSIGFLIKLMGKHISSALPQIMACLQSALEIPE--LRSLALRCWHVLIKTLKE   87 (107)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchh--HHHHHHHHHHHHHHhCCH
Confidence            7899999999999999999999999999999999998665  999999998888888753

Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.

>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=96.17  E-value=0.38  Score=56.90  Aligned_cols=192  Identities=11%  Similarity=0.101  Sum_probs=132.7

Q ss_pred             hHHHHHHHHHHHHH-hCCcCcHHHHHHhhhhcCCCCC-----hHHHHHHHHHHHHHHHHccccchhhHHHHHHHHHhh-c
Q 046417           35 TLPVATAELESIAR-TLTQDSFSSFLNCLQTTDSSSK-----SPVRKQCVNLLTLLSRSHGDSLSPHLSKMISTVSCR-L  107 (595)
Q Consensus        35 T~r~A~~~LD~lA~-~L~~~~lp~fL~~L~d~~ss~k-----p~vRKaaI~lLG~lAEg~gd~I~PhLpkIL~~Ivrr-L  107 (595)
                      .+|-+...+-...= -|+...+..+..-|.+...+.+     |..=++|+-.|-.+|+-.++...+.+++++.....- +
T Consensus       439 ~YR~diSD~~~~~Y~ilgd~ll~~L~~~l~q~~aa~d~~p~s~~~tEaci~~~~sva~~~~~t~~~~i~rl~~~~asik~  518 (982)
T KOG2022|consen  439 SYRKDISDLLMSSYSILGDGLLDFLIDTLEQALAAGDEDPDSLNRTEACIFQFQSVAEYLGETESTWIPRLFETSASIKL  518 (982)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhccCCCchHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHhcccccc
Confidence            45555554433222 2343346666666666543333     678899999999999999999999999999876654 5


Q ss_pred             cCCChhHHHHHHHHHHHhhhhhcCCcch--hccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHH
Q 046417          108 RDPDSSVRSACVAATTAMSLNITKPSFS--VLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNPEVEQLRKLLPRLGK  185 (595)
Q Consensus       108 kD~ds~VR~Ac~~aLg~LA~~l~~~~~~--~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d~~~~~L~~Ll~rL~k  185 (595)
                      .-+++..-.-|.+.+|.++.|+.+.|..  ..++-|+.+| + +.+..+ -|..-|.++||..+..+.||...++.-...
T Consensus       519 S~~n~ql~~Tss~~igs~s~~l~e~P~~ln~sl~~L~~~L-h-~sk~s~-q~i~tl~tlC~~C~~~L~py~d~~~a~~~e  595 (982)
T KOG2022|consen  519 SAPNPQLLSTSSDLIGSLSNWLGEHPMYLNPSLPLLFQGL-H-NSKESE-QAISTLKTLCETCPESLDPYADQFSAVCYE  595 (982)
T ss_pred             ccCChhHHHHHHHHHHHHHHHHhcCCcccCchHHHHHHHh-c-CchHHH-HHHHHHHHHHHhhhhhCchHHHHHHHHHHH
Confidence            5568888889999999999999776644  2555566666 3 333322 233448999999888888999998888888


Q ss_pred             hhccCchh--HHHHHHHHHHHHHHhhc-ccCcCcHHhHHHHHHHhcc
Q 046417          186 AVRIEGFK--AKAAVLGVIGSVVRVGG-ARSKGVLDWLVPCLVEFLC  229 (595)
Q Consensus       186 lL~~~~~k--aK~alLsAIgSlA~a~g-~~~~~yl~~lmp~L~e~L~  229 (595)
                      .+.....+  .+..++.+||=+.+.-. +.-+.|+..++.++.+-+.
T Consensus       596 ~l~~~~~~~S~~~klm~sIGyvls~~~pEe~~kyl~~lin~il~qle  642 (982)
T KOG2022|consen  596 VLNKSNAKDSDRLKLMKSIGYVLSRLKPEEIPKYLMKLINPILSQLE  642 (982)
T ss_pred             HhcccccCchHHHHHHHHHHHHHHhccHHhHHHHHHHHHHHHHHHHH
Confidence            88654333  45667788887776443 2346777777776666553

>PF08167 RIX1: rRNA processing/ribosome biogenesis

Probab=96.17  E-value=0.12  Score=49.94  Aligned_cols=127  Identities=17%  Similarity=0.126  Sum_probs=87.2

Q ss_pred             CcHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHc-cccchhhHHHHHHHHHhhccCCChh-HHHHHHHHHHHhhhhhc
Q 046417           53 DSFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSH-GDSLSPHLSKMISTVSCRLRDPDSS-VRSACVAATTAMSLNIT  130 (595)
Q Consensus        53 ~~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~-gd~I~PhLpkIL~~IvrrLkD~ds~-VR~Ac~~aLg~LA~~l~  130 (595)
                      ..+..+...|.....+.++..|-.++.+++++++.| .+.+..|-...+..++..|+.+++. +..+|+.+++.|-.++.
T Consensus        21 ~~l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~  100 (165)
T PF08167_consen   21 SALHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIR  100 (165)
T ss_pred             HHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc
Confidence            347777888877777778899999999999999999 5877788888889999999988874 79999999999998886


Q ss_pred             CCcc-h-----hccHHHHHHHhhc-CChhHHHHHHHHHHHHHhcCCCchHHHHHHH
Q 046417          131 KPSF-S-----VLSKPLIELILVE-QDVNSQVGGAMCLAAAIDAAPNPEVEQLRKL  179 (595)
Q Consensus       131 ~~~~-~-----~~l~PLi~aLl~d-~nk~VQ~~AA~cLaaviE~a~d~~~~~L~~L  179 (595)
                      +.+. .     ..++.++..++.- ++..+...+.-+|..++..-+....|+-.+|
T Consensus       101 ~~p~l~Rei~tp~l~~~i~~ll~l~~~~~~~~~~l~~L~~ll~~~ptt~rp~~~ki  156 (165)
T PF08167_consen  101 GKPTLTREIATPNLPKFIQSLLQLLQDSSCPETALDALATLLPHHPTTFRPFANKI  156 (165)
T ss_pred             CCCchHHHHhhccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHCCccccchHHHH
Confidence            5432 1     1334444444321 1123444555555555554433333444333

>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain

Probab=96.14  E-value=0.3  Score=51.24  Aligned_cols=125  Identities=21%  Similarity=0.223  Sum_probs=89.4

Q ss_pred             HHHHHHHHHHHhCCcCc-HHHHHHhh-hhcCCCCChHHHHHHHHHHHHHHHHccccchhhHHHHHHHHHhhccCCChhHH
Q 046417           38 VATAELESIARTLTQDS-FSSFLNCL-QTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPHLSKMISTVSCRLRDPDSSVR  115 (595)
Q Consensus        38 ~A~~~LD~lA~~L~~~~-lp~fL~~L-~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~PhLpkIL~~IvrrLkD~ds~VR  115 (595)
                      ++...|+.....+.+.. +.-++..| .....+.++.+|+.++++||..+=...+....|++-++..+.+   | +..|+
T Consensus         6 i~~~lL~~~~~~~~~~~~l~~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~~~l~l~~~~~~~---~-~~~v~   81 (298)
T PF12719_consen    6 ITQSLLENVSSSLSPNISLESLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAKEHLPLFLQALQK---D-DEEVK   81 (298)
T ss_pred             HHHHHHHhccccCCCcchHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHh---C-CHHHH
Confidence            34555666665666544 55555444 4667778899999999999999999998888888877776622   4 88899


Q ss_pred             HHHHHHHHHhhhhhcCC-----cc------h-hccHHHHHHHhhcCChhHHHHHHHHHHHHHhc
Q 046417          116 SACVAATTAMSLNITKP-----SF------S-VLSKPLIELILVEQDVNSQVGGAMCLAAAIDA  167 (595)
Q Consensus       116 ~Ac~~aLg~LA~~l~~~-----~~------~-~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~  167 (595)
                      ..|+.++.-+.-+....     ..      . .+++-+...| .+.++.+|..|+-+|+++.=.
T Consensus        82 ~~al~~l~Dll~~~g~~~~~~~~~~~~~~~~~~l~~~l~~~l-~~~~~~~~~~a~EGl~KLlL~  144 (298)
T PF12719_consen   82 ITALKALFDLLLTHGIDIFDSESDNDESVDSKSLLKILTKFL-DSENPELQAIAVEGLCKLLLS  144 (298)
T ss_pred             HHHHHHHHHHHHHcCchhccchhccCccchHhHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHhc
Confidence            99999988887554211     11      1 2555566666 455888999999999998765

>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]

Probab=96.09  E-value=0.07  Score=57.24  Aligned_cols=192  Identities=15%  Similarity=0.133  Sum_probs=121.4

Q ss_pred             cHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccchh-hHHHHHHHHHhhccCCChhHHHHHHHHHHHhhhhhcCC
Q 046417           54 SFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSP-HLSKMISTVSCRLRDPDSSVRSACVAATTAMSLNITKP  132 (595)
Q Consensus        54 ~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~P-hLpkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~~~  132 (595)
                      .+|.|+..+-+.   +.-...=++.-+|..+|.|-.+...- -=..-+|.+++.|.+++-.||+.++||||-+|..-..-
T Consensus       115 vVpRfvefm~~~---q~~mlqfEAaWalTNiaSGtt~QTkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~  191 (526)
T COG5064         115 VVPRFVEFMDEI---QRDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGC  191 (526)
T ss_pred             ccHHHHHHHHhc---chhHHHHHHHHHHhhhccCcccceEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhH
Confidence            377787777542   22334447788889999987532100 01234678899999999999999999999999543211


Q ss_pred             cch----hccHHHHHHHhhcCChhH--HHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHHhhccCchhHHHHHHHHHHHH
Q 046417          133 SFS----VLSKPLIELILVEQDVNS--QVGGAMCLAAAIDAA-PNPEVEQLRKLLPRLGKAVRIEGFKAKAAVLGVIGSV  205 (595)
Q Consensus       133 ~~~----~~l~PLi~aLl~d~nk~V--Q~~AA~cLaaviE~a-~d~~~~~L~~Ll~rL~klL~~~~~kaK~alLsAIgSl  205 (595)
                      ..+    -.+.||+..|. .+-.++  ---|---|..++-+- +.+.-..+.+.+|-|.|++......+-.-+.=||+=+
T Consensus       192 RD~vL~~galeplL~ll~-ss~~~ismlRn~TWtLSNlcRGknP~P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYl  270 (526)
T COG5064         192 RDYVLQCGALEPLLGLLL-SSAIHISMLRNATWTLSNLCRGKNPPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYL  270 (526)
T ss_pred             HHHHHhcCchHHHHHHHH-hccchHHHHHHhHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHh
Confidence            111    27889999885 333322  234445588888873 4444567888999999999777665322222233333


Q ss_pred             HHhhcccCcCcH-HhHHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Q 046417          206 VRVGGARSKGVL-DWLVPCLVEFLCCDDWATRKAAAEVLGKVAVF  249 (595)
Q Consensus       206 A~a~g~~~~~yl-~~lmp~L~e~L~~dDW~~RkaAaEaLgsIA~a  249 (595)
                      .+...+.....+ -.+++.|++.|++++-...-+|+-++|.|.+.
T Consensus       271 sDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG  315 (526)
T COG5064         271 SDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTG  315 (526)
T ss_pred             ccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeec
Confidence            222211111122 22578899999998877777888888877653

>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.05  E-value=0.2  Score=58.52  Aligned_cols=224  Identities=17%  Similarity=0.206  Sum_probs=132.3

Q ss_pred             HHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccchhhHHHHHHHHHhhccCCChhHHHHHHHHHHHhhhhhcCCcc
Q 046417           55 FSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPHLSKMISTVSCRLRDPDSSVRSACVAATTAMSLNITKPSF  134 (595)
Q Consensus        55 lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~PhLpkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~~~~~  134 (595)
                      ..++++.|..-..+-.-.+--++.+++-.+....+.-+.|    -+..+.-.|.-|.+.+|-|+..+|-++|......  
T Consensus       243 ~s~~~~fl~s~l~~K~emV~~EaArai~~l~~~~~r~l~p----avs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~--  316 (865)
T KOG1078|consen  243 DSPLFPFLESCLRHKSEMVIYEAARAIVSLPNTNSRELAP----AVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQA--  316 (865)
T ss_pred             hhhHHHHHHHHHhchhHHHHHHHHHHHhhccccCHhhcch----HHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCcc--
Confidence            4445555544433322356667777777777777777777    5667777788899999999999999999765321  


Q ss_pred             hhccHHHHHHHhhcCChhHHHHHHHHH----------------HHHHhcCCCc----hHH----------HHHH-HHHHH
Q 046417          135 SVLSKPLIELILVEQDVNSQVGGAMCL----------------AAAIDAAPNP----EVE----------QLRK-LLPRL  183 (595)
Q Consensus       135 ~~~l~PLi~aLl~d~nk~VQ~~AA~cL----------------aaviE~a~d~----~~~----------~L~~-Ll~rL  183 (595)
                      +.-+.+=++.|..+.|+.+..-|..-|                +.++-...+.    +..          .... ++.=|
T Consensus       317 v~~cN~elE~lItd~NrsIat~AITtLLKTG~e~sv~rLm~qI~~fv~disDeFKivvvdai~sLc~~fp~k~~~~m~FL  396 (865)
T KOG1078|consen  317 VTVCNLDLESLITDSNRSIATLAITTLLKTGTESSVDRLMKQISSFVSDISDEFKIVVVDAIRSLCLKFPRKHTVMMNFL  396 (865)
T ss_pred             ccccchhHHhhhcccccchhHHHHHHHHHhcchhHHHHHHHHHHHHHHhccccceEEeHHHHHHHHhhccHHHHHHHHHH
Confidence            123333333333444433221111111                1111111111    011          1112 34445


Q ss_pred             HHhhccC-chhHHHHHHHHHHHHHHhhcccCcCcHHhHHHHHHHh------------c---------------------c
Q 046417          184 GKAVRIE-GFKAKAAVLGVIGSVVRVGGARSKGVLDWLVPCLVEF------------L---------------------C  229 (595)
Q Consensus       184 ~klL~~~-~~kaK~alLsAIgSlA~a~g~~~~~yl~~lmp~L~e~------------L---------------------~  229 (595)
                      ..+|+.. .|.-|.+.+++|-.++.-......+-+..++..+.++            |                     .
T Consensus       397 ~~~Lr~eGg~e~K~aivd~Ii~iie~~pdsKe~~L~~LCefIEDce~~~i~~rILhlLG~EgP~a~~Pskyir~iyNRvi  476 (865)
T KOG1078|consen  397 SNMLREEGGFEFKRAIVDAIIDIIEENPDSKERGLEHLCEFIEDCEFTQIAVRILHLLGKEGPKAPNPSKYIRFIYNRVI  476 (865)
T ss_pred             HHHHHhccCchHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHhccchHHHHHHHHHHhccCCCCCCcchhhHHHhhhhh
Confidence            5556554 8888999999999988744333233334444333322            1                     0


Q ss_pred             CCCHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHhH
Q 046417          230 CDDWATRKAAAEVLGKVAVFDKDLATEYKRSCLAALETRRFDKVKIVRETMNRSLEMWK  288 (595)
Q Consensus       230 ~dDW~~RkaAaEaLgsIA~avge~f~py~~~~I~~Le~crfDKVK~VRda~~~aL~~~K  288 (595)
                      -++--+|.+|.-||+.++ +-.+...   +++.-.|.+|-+|+.-.|||.+.=+|..+.
T Consensus       477 LEn~ivRaaAv~alaKfg-~~~~~l~---~sI~vllkRc~~D~DdevRdrAtf~l~~l~  531 (865)
T KOG1078|consen  477 LENAIVRAAAVSALAKFG-AQDVVLL---PSILVLLKRCLNDSDDEVRDRATFYLKNLE  531 (865)
T ss_pred             hhhhhhHHHHHHHHHHHh-cCCCCcc---ccHHHHHHHHhcCchHHHHHHHHHHHHHhh
Confidence            135678899999998887 2123333   356668999999999999999999888877

>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]

Probab=96.05  E-value=0.28  Score=58.04  Aligned_cols=193  Identities=15%  Similarity=0.125  Sum_probs=133.4

Q ss_pred             cHHHHHHhhhhcC-CCCChHHHHHHHHHHHHHHHHccccchhhHHHHHHHHHhhccCCChhHHHHHHHHHHHhhhhhcCC
Q 046417           54 SFSSFLNCLQTTD-SSSKSPVRKQCVNLLTLLSRSHGDSLSPHLSKMISTVSCRLRDPDSSVRSACVAATTAMSLNITKP  132 (595)
Q Consensus        54 ~lp~fL~~L~d~~-ss~kp~vRKaaI~lLG~lAEg~gd~I~PhLpkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~~~  132 (595)
                      -+..||....... .+..+++|-.++++|...+  -...+.|.+|.|+-.|+....+....|-.+-.+||...+..=++.
T Consensus       487 ~~~~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~--~~~vl~~~~p~ild~L~qlas~~s~evl~llmE~Ls~vv~~dpef  564 (1005)
T KOG2274|consen  487 LLQHFLNATVNALTMDVPPPVKISAVRAFCGYC--KVKVLLSLQPMILDGLLQLASKSSDEVLVLLMEALSSVVKLDPEF  564 (1005)
T ss_pred             HHHHHHHHHHHhhccCCCCchhHHHHHHHHhcc--CceeccccchHHHHHHHHHcccccHHHHHHHHHHHHHHhccChhh
Confidence            3555555443333 3345688888888755444  226779999999999999999999999999999998888765432


Q ss_pred             cch--hccHHHHHHHhh--cCChhHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhccCc----hhHHHHHHHHHHH
Q 046417          133 SFS--VLSKPLIELILV--EQDVNSQVGGAMCLAAAIDAAPNPEVEQLRKLLPRLGKAVRIEG----FKAKAAVLGVIGS  204 (595)
Q Consensus       133 ~~~--~~l~PLi~aLl~--d~nk~VQ~~AA~cLaaviE~a~d~~~~~L~~Ll~rL~klL~~~~----~kaK~alLsAIgS  204 (595)
                      +..  .-+-|++-+++.  ..+++|-.-+=-|+..+++.+.. -.++-..++|-|+..|+.+.    ......+|+.|..
T Consensus       565 ~as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~~~-~g~m~e~~iPslisil~~~~~~~~~~l~~~aidvLtt  643 (1005)
T KOG2274|consen  565 AASMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIAAN-YGPMQERLIPSLISVLQLNADKAPAGLCAIAIDVLTT  643 (1005)
T ss_pred             hhhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHh-hcchHHHHHHHHHHHHcCcccccCchhhHHHHHHHHH
Confidence            222  366777777764  56777766666777777776422 12577889999999998776    3345666788887


Q ss_pred             HHHhhccc-CcCcHHhHHHHHHHhc-cCCCHHHHHHHHHHHHHHHHH
Q 046417          205 VVRVGGAR-SKGVLDWLVPCLVEFL-CCDDWATRKAAAEVLGKVAVF  249 (595)
Q Consensus       205 lA~a~g~~-~~~yl~~lmp~L~e~L-~~dDW~~RkaAaEaLgsIA~a  249 (595)
                      +...+.-. ...++..+.|++..+. .++|-.+--.|-|||.++-..
T Consensus       644 vvr~tp~pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~  690 (1005)
T KOG2274|consen  644 VLRNTPSPLPNLLICYAFPAVAKITLHSDDHETLQNATECLRALISV  690 (1005)
T ss_pred             HHhcCCCCccHHHHHHHhHHhHhheeecCChHHHHhHHHHHHHHHhc
Confidence            77654322 2334455677777764 567778888889998876543

>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 []

Probab=96.05  E-value=0.032  Score=50.23  Aligned_cols=59  Identities=14%  Similarity=0.285  Sum_probs=54.4

Q ss_pred             hHHHHHHHHHHHHHHHHccccchhhHHHHHHHHHhhccCCChhHHHHHHHHHHHhhhhhcC
Q 046417           71 SPVRKQCVNLLTLLSRSHGDSLSPHLSKMISTVSCRLRDPDSSVRSACVAATTAMSLNITK  131 (595)
Q Consensus        71 p~vRKaaI~lLG~lAEg~gd~I~PhLpkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~~  131 (595)
                      -..|+.++++++.+.+.++.++.+++|+|+.++...|..+  .+|..|+.+-..|...+..
T Consensus        29 ~~ek~~~l~si~~lI~~~~~~i~~~~pQI~a~L~sal~~~--~l~~~al~~W~~fi~~L~~   87 (107)
T PF08064_consen   29 IPEKKRALRSIEELIKLGGSHISSARPQIMACLQSALEIP--ELREEALSCWNCFIKTLDE   87 (107)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCh--hhHHHHHHHHHHHHHHCCH
Confidence            4899999999999999999999999999999999999887  7999999998999888853

; GO: 0004674 protein serine/threonine kinase activity

>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.03  E-value=0.67  Score=54.40  Aligned_cols=67  Identities=15%  Similarity=0.113  Sum_probs=46.8

Q ss_pred             cCcHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccchhhHHHHHHHHHhhccCCChhHHHHHHHHH
Q 046417           52 QDSFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPHLSKMISTVSCRLRDPDSSVRSACVAAT  122 (595)
Q Consensus        52 ~~~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~PhLpkIL~~IvrrLkD~ds~VR~Ac~~aL  122 (595)
                      |-..|.+|-.|.+...++-++||+.+.+|+--+=..-++    +=++++-.|-..|.|.+|.|-.+++.|.
T Consensus       138 p~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e----~k~qL~e~I~~LLaD~splVvgsAv~AF  204 (968)
T KOG1060|consen  138 PMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPE----QKDQLEEVIKKLLADRSPLVVGSAVMAF  204 (968)
T ss_pred             hhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChh----hHHHHHHHHHHHhcCCCCcchhHHHHHH
Confidence            334677788888877777788888888886655444333    2236666777778888888877777663

>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]

Probab=96.02  E-value=0.36  Score=58.09  Aligned_cols=209  Identities=15%  Similarity=0.137  Sum_probs=128.0

Q ss_pred             HHHHHHHHHHHHHHHcc----ccchhhHHHHHHHHHhhccCCChhHHHHHHHHHHHhhhhhcC--Ccchh-ccHHHHHHH
Q 046417           73 VRKQCVNLLTLLSRSHG----DSLSPHLSKMISTVSCRLRDPDSSVRSACVAATTAMSLNITK--PSFSV-LSKPLIELI  145 (595)
Q Consensus        73 vRKaaI~lLG~lAEg~g----d~I~PhLpkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~~--~~~~~-~l~PLi~aL  145 (595)
                      .|......+..+.....    +.+..-+..|+.   ..+.+|+ .+|+++.++++.++.-+.+  +.+.. ++.-.+..+
T Consensus       651 mr~~~~~~Ie~~s~s~~~~~~~~v~e~~~~ll~---~~l~~~n-~i~~~av~av~~l~s~y~~~d~~~~~~li~~~ls~~  726 (1133)
T KOG1943|consen  651 MRQATLKFIEQLSLSKDRLFQDFVIENWQMLLA---QNLTLPN-QIRDAAVSAVSDLVSTYVKADEGEEAPLITRYLSRL  726 (1133)
T ss_pred             HHHHHHHHHHHhhhccchhHHHHHHHHHHHHHH---HhhcchH-HHHHHHHHHHHHHHHHHHhcCchhhhHHHHHHHHHh
Confidence            34444444444444443    344443444443   3346777 8999999999999965432  22222 223334444


Q ss_pred             hhcCChhHHHHHHHHHHHHHhcCCCch--HHHHHHHHHHHHHhhccC-chhHHHHHHHHHHHHHHhhc-----ccCcCcH
Q 046417          146 LVEQDVNSQVGGAMCLAAAIDAAPNPE--VEQLRKLLPRLGKAVRIE-GFKAKAAVLGVIGSVVRVGG-----ARSKGVL  217 (595)
Q Consensus       146 l~d~nk~VQ~~AA~cLaaviE~a~d~~--~~~L~~Ll~rL~klL~~~-~~kaK~alLsAIgSlA~a~g-----~~~~~yl  217 (595)
                      -...+..+-.+-.++    .+..+...  .++-+.+|..++..+-.. ...++.+.+.++..+....+     ..+..|+
T Consensus       727 ~~~~~~~~r~g~~la----l~~lp~~~i~~~~q~~lc~~~l~~~p~d~~a~aR~~~V~al~~v~~~~~~~~~~~~~~k~~  802 (1133)
T KOG1943|consen  727 TKCSEERIRRGLILA----LGVLPSELIHRHLQEKLCKLVLELLPSDAWAEARQQNVKALAHVCKTVTSLLFSESIEKFR  802 (1133)
T ss_pred             cCchHHHHHHHHHHH----HccCcHHhhchHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHHHHHHHhhccccHHHHH
Confidence            212233333333333    34443222  245566777777766555 66677777777776665433     2346777


Q ss_pred             HhHHHHHHHhccCC----CHHHHHHHHHHHHHHHHHh--HHhHHHH-HHHHHHHHHhccCCchHHHHHHHHHHHHHhHh
Q 046417          218 DWLVPCLVEFLCCD----DWATRKAAAEVLGKVAVFD--KDLATEY-KRSCLAALETRRFDKVKIVRETMNRSLEMWKE  289 (595)
Q Consensus       218 ~~lmp~L~e~L~~d----DW~~RkaAaEaLgsIA~av--ge~f~py-~~~~I~~Le~crfDKVK~VRda~~~aL~~~K~  289 (595)
                      +.++.+|.+|..|.    --.+|++|.-+|..+-..+  ++++.+. ...++..+-.--+|||.-.|+-+..+++.+.-
T Consensus       803 e~LL~~lddYttd~rGDVGswVReaAm~al~~~~~~l~~p~~ld~~~i~~~~~~~vqQ~veKIdrlre~a~~~~~qi~~  881 (1133)
T KOG1943|consen  803 ETLLNALDDYTTDSRGDVGSWVREAAMKALSSLLDTLSSPKLLDEDSINRIIRYFVQQAVEKIDRLRELAASALNQIVV  881 (1133)
T ss_pred             HHHHHHHhhcccccCccHHHHHHHHHHHHHHhhhhhhcCcccccHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhceee
Confidence            88888888887753    2457999999999998765  4666665 46677767777789998889998888876543

>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]

Probab=95.96  E-value=0.23  Score=59.07  Aligned_cols=187  Identities=13%  Similarity=0.124  Sum_probs=139.8

Q ss_pred             HHHHHHHHHhhccCCChhHHHHHHHHHHHhhhhhc-C--CcchhccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCCCch
Q 046417           96 LSKMISTVSCRLRDPDSSVRSACVAATTAMSLNIT-K--PSFSVLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNPE  172 (595)
Q Consensus        96 LpkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~-~--~~~~~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d~~  172 (595)
                      +++|-+.+...+-|++.-=|..+...|...-+.-. .  +....++..++...+-|.|.+|-.-|+.||..+.-......
T Consensus       251 ~~ki~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~  330 (815)
T KOG1820|consen  251 LSKITKNLETEMLSKKWKDRKEALEELVAILEEAKKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLF  330 (815)
T ss_pred             hhhcChHHHHhhhccchHHHHHHHHHHHHHHhccccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhh
Confidence            56777788888889999999888888776665432 1  11123666677776668888888888999999888887777


Q ss_pred             HHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHhhcccCcCcHHhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhH-
Q 046417          173 VEQLRKLLPRLGKAVRIEGFKAKAAVLGVIGSVVRVGGARSKGVLDWLVPCLVEFLCCDDWATRKAAAEVLGKVAVFDK-  251 (595)
Q Consensus       173 ~~~L~~Ll~rL~klL~~~~~kaK~alLsAIgSlA~a~g~~~~~yl~~lmp~L~e~L~~dDW~~RkaAaEaLgsIA~avg-  251 (595)
                      .+|...+.|.|+..+....-.++.+++.++-++..+      --+...++.+.+++.+..-+.|......+...-.-.+ 
T Consensus       331 ~~~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns------~~l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~  404 (815)
T KOG1820|consen  331 RKYAKNVFPSLLDRLKEKKSELRDALLKALDAILNS------TPLSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGP  404 (815)
T ss_pred             HHHHHhhcchHHHHhhhccHHHHHHHHHHHHHHHhc------ccHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCC
Confidence            789999999999999988888888888777776642      2246778999999999888888887777777666554 


Q ss_pred             -----HhHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHhHhcCC
Q 046417          252 -----DLATEYKRSCLAALETRRFDKVKIVRETMNRSLEMWKEVPG  292 (595)
Q Consensus       252 -----e~f~py~~~~I~~Le~crfDKVK~VRda~~~aL~~~K~i~~  292 (595)
                           +......+.|+..-.    |+-+.||.++.+++-....+-|
T Consensus       405 ~~~~~~t~~~l~p~~~~~~~----D~~~~VR~Aa~e~~~~v~k~~G  446 (815)
T KOG1820|consen  405 KTVEKETVKTLVPHLIKHIN----DTDKDVRKAALEAVAAVMKVHG  446 (815)
T ss_pred             cCcchhhHHHHhHHHhhhcc----CCcHHHHHHHHHHHHHHHHHhh
Confidence                 223333455555554    8899999999999887766544

>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane

Probab=95.96  E-value=0.018  Score=62.52  Aligned_cols=130  Identities=12%  Similarity=0.187  Sum_probs=81.4

Q ss_pred             CCCChHHHHHHHH-HHHHHhCCcCcHHHHHHhhhhc------CCCCChHHHHHHHHHHHHHHHHcc---ccc---hh--h
Q 046417           31 ADRDTLPVATAEL-ESIARTLTQDSFSSFLNCLQTT------DSSSKSPVRKQCVNLLTLLSRSHG---DSL---SP--H   95 (595)
Q Consensus        31 ~DrDT~r~A~~~L-D~lA~~L~~~~lp~fL~~L~d~------~ss~kp~vRKaaI~lLG~lAEg~g---d~I---~P--h   95 (595)
                      +|-+|.|.|+..| ..+++..+....+.++.++...      ..+.+|..+.+|+.++|.+|.-..   .++   .+  .
T Consensus       222 sd~~TrR~AA~dfl~~L~~~~~~~v~~i~~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~  301 (370)
T PF08506_consen  222 SDSDTRRRAACDFLRSLCKKFEKQVTSILMQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVD  301 (370)
T ss_dssp             S---SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-
T ss_pred             cccCCcHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCccccccccc
Confidence            5777877766555 6799888765566665555543      245679999999999999997662   111   11  1


Q ss_pred             HHHH-HHHHHhhcc---CCChhHHHHHHHHHHHhhhhhcCCcchhccHHHHHHHhhcCChhHHHHHHHHH
Q 046417           96 LSKM-ISTVSCRLR---DPDSSVRSACVAATTAMSLNITKPSFSVLSKPLIELILVEQDVNSQVGGAMCL  161 (595)
Q Consensus        96 LpkI-L~~IvrrLk---D~ds~VR~Ac~~aLg~LA~~l~~~~~~~~l~PLi~aLl~d~nk~VQ~~AA~cL  161 (595)
                      +... -.+|+.-|+   ...|.+|..|++.+..+...+.++....+++.|+..| ++.+..|..-||.|+
T Consensus       302 v~~Ff~~~v~peL~~~~~~~piLka~aik~~~~Fr~~l~~~~l~~~~~~l~~~L-~~~~~vv~tyAA~~i  370 (370)
T PF08506_consen  302 VVDFFSQHVLPELQPDVNSHPILKADAIKFLYTFRNQLPKEQLLQIFPLLVNHL-QSSSYVVHTYAAIAI  370 (370)
T ss_dssp             HHHHHHHHTCHHHH-SS-S-HHHHHHHHHHHHHHGGGS-HHHHHHHHHHHHHHT-TSS-HHHHHHHHHHH
T ss_pred             HHHHHHHHhHHHhcccCCCCcchHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHh-CCCCcchhhhhhhhC
Confidence            1222 223334455   4567789999999999999885433334666677776 778888999998875

Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.

>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]

Probab=95.89  E-value=0.13  Score=60.41  Aligned_cols=149  Identities=12%  Similarity=0.181  Sum_probs=95.5

Q ss_pred             HHHHHHHHhCCc-CcHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccchhhHHHHHHHHHhhccCCChhHHHHHH
Q 046417           41 AELESIARTLTQ-DSFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPHLSKMISTVSCRLRDPDSSVRSACV  119 (595)
Q Consensus        41 ~~LD~lA~~L~~-~~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~PhLpkIL~~IvrrLkD~ds~VR~Ac~  119 (595)
                      ++++.+..++.. +.++-+++-+.-...+-+...||=+..=+-..++++++.+.    -.+.++.+-|+||++.+|..|.
T Consensus        38 dAmK~iIa~M~~G~dmssLf~dViK~~~trd~ElKrL~ylYl~~yak~~P~~~l----LavNti~kDl~d~N~~iR~~Al  113 (757)
T COG5096          38 DAMKKIIAQMSLGEDMSSLFPDVIKNVATRDVELKRLLYLYLERYAKLKPELAL----LAVNTIQKDLQDPNEEIRGFAL  113 (757)
T ss_pred             HHHHHHHHHHhcCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHHHH----HHHHHHHhhccCCCHHHHHHHH
Confidence            445555555432 22665555554444466788888888888889998884321    2366888889999999999888


Q ss_pred             HHHHHhhhhhcCCcch-hccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCCCchHHHHH-H-HHHHHHHhhccCchhHHH
Q 046417          120 AATTAMSLNITKPSFS-VLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNPEVEQLR-K-LLPRLGKAVRIEGFKAKA  196 (595)
Q Consensus       120 ~aLg~LA~~l~~~~~~-~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d~~~~~L~-~-Ll~rL~klL~~~~~kaK~  196 (595)
                      .+|+.+-..    .+. .++.|+...+ ++.+++|-..||+|+.++-+--++    +.+ . ++..+..++.+.+..|++
T Consensus       114 R~ls~l~~~----el~~~~~~~ik~~l-~d~~ayVRk~Aalav~kly~ld~~----l~~~~g~~~~l~~l~~D~dP~Vi~  184 (757)
T COG5096         114 RTLSLLRVK----ELLGNIIDPIKKLL-TDPHAYVRKTAALAVAKLYRLDKD----LYHELGLIDILKELVADSDPIVIA  184 (757)
T ss_pred             HHHHhcChH----HHHHHHHHHHHHHc-cCCcHHHHHHHHHHHHHHHhcCHh----hhhcccHHHHHHHHhhCCCchHHH
Confidence            888776542    111 2666666666 788889999999998887754322    222 2 344444555555555555


Q ss_pred             HHHHHH
Q 046417          197 AVLGVI  202 (595)
Q Consensus       197 alLsAI  202 (595)
                      .++.++
T Consensus       185 nAl~sl  190 (757)
T COG5096         185 NALASL  190 (757)
T ss_pred             HHHHHH
Confidence            444333

>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.83  E-value=0.46  Score=55.44  Aligned_cols=190  Identities=14%  Similarity=0.145  Sum_probs=115.7

Q ss_pred             cCcHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccchhhHHHHHHHHHhhccCCChhHHHH-----------HHH
Q 046417           52 QDSFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPHLSKMISTVSCRLRDPDSSVRSA-----------CVA  120 (595)
Q Consensus        52 ~~~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~PhLpkIL~~IvrrLkD~ds~VR~A-----------c~~  120 (595)
                      |+.+.+|++.|.+.+++..+++||.||.+++.|=.. .+.+.|--|.|+...+-+=+||.- -|.|           |..
T Consensus       129 ~ELlepl~p~IracleHrhsYVRrNAilaifsIyk~-~~~L~pDapeLi~~fL~~e~DpsC-kRNAFi~L~~~D~ErAl~  206 (948)
T KOG1058|consen  129 PELLEPLMPSIRACLEHRHSYVRRNAILAIFSIYKN-FEHLIPDAPELIESFLLTEQDPSC-KRNAFLMLFTTDPERALN  206 (948)
T ss_pred             HHHhhhhHHHHHHHHhCcchhhhhhhheeehhHHhh-hhhhcCChHHHHHHHHHhccCchh-HHHHHHHHHhcCHHHHHH
Confidence            677999999999999999999999999998887776 577888888998887766666531 1222           222


Q ss_pred             HHHHhhhhhcC-------------------Cc-ch-hccHHHHHHHhh----------------cCChhHHHHHHHHHHH
Q 046417          121 ATTAMSLNITK-------------------PS-FS-VLSKPLIELILV----------------EQDVNSQVGGAMCLAA  163 (595)
Q Consensus       121 aLg~LA~~l~~-------------------~~-~~-~~l~PLi~aLl~----------------d~nk~VQ~~AA~cLaa  163 (595)
                      .|+.-...+..                   .| +. .|++-++..|..                .+++.+-.+||.|+-.
T Consensus       207 Yl~~~idqi~~~~~~LqlViVE~Irkv~~~~p~~~~~~i~~i~~lL~stssaV~fEaa~tlv~lS~~p~alk~Aa~~~i~  286 (948)
T KOG1058|consen  207 YLLSNIDQIPSFNDSLQLVIVELIRKVCLANPAEKARYIRCIYNLLSSTSSAVIFEAAGTLVTLSNDPTALKAAASTYID  286 (948)
T ss_pred             HHHhhHhhccCccHHHHHHHHHHHHHHHhcCHHHhhHHHHHHHHHHhcCCchhhhhhcceEEEccCCHHHHHHHHHHHHH
Confidence            22211111110                   01 00 144545555532                3456667788888666


Q ss_pred             HHhcCCCc----h------------HHHHHHHHHHHHHhhccCchhHHHH------------------------------
Q 046417          164 AIDAAPNP----E------------VEQLRKLLPRLGKAVRIEGFKAKAA------------------------------  197 (595)
Q Consensus       164 viE~a~d~----~------------~~~L~~Ll~rL~klL~~~~~kaK~a------------------------------  197 (595)
                      +++..++-    +            ...++.|.--++.+|..+++.++.-                              
T Consensus       287 l~~kesdnnvklIvldrl~~l~~~~~~il~~l~mDvLrvLss~dldvr~Ktldi~ldLvssrNvediv~~Lkke~~kT~~  366 (948)
T KOG1058|consen  287 LLVKESDNNVKLIVLDRLSELKALHEKILQGLIMDVLRVLSSPDLDVRSKTLDIALDLVSSRNVEDIVQFLKKEVMKTHN  366 (948)
T ss_pred             HHHhccCcchhhhhHHHHHHHhhhhHHHHHHHHHHHHHHcCcccccHHHHHHHHHHhhhhhccHHHHHHHHHHHHHhccc
Confidence            65543221    1            1134455555566665555444333                              


Q ss_pred             ------------HHHHHHHHHHhhcccCcCcHHhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHh
Q 046417          198 ------------VLGVIGSVVRVGGARSKGVLDWLVPCLVEFLCCDDWATRKAAAEVLGKVAVFD  250 (595)
Q Consensus       198 ------------lLsAIgSlA~a~g~~~~~yl~~lmp~L~e~L~~dDW~~RkaAaEaLgsIA~av  250 (595)
                                  ++.+|.+.|    ..|+.+...++|.|.+|+.|.+-   ++|.+.|..|-.++
T Consensus       367 ~e~d~~~~yRqlLiktih~ca----v~Fp~~aatvV~~ll~fisD~N~---~aas~vl~FvrE~i  424 (948)
T KOG1058|consen  367 EESDDNGKYRQLLIKTIHACA----VKFPEVAATVVSLLLDFISDSNE---AAASDVLMFVREAI  424 (948)
T ss_pred             cccccchHHHHHHHHHHHHHh----hcChHHHHHHHHHHHHHhccCCH---HHHHHHHHHHHHHH
Confidence                        333333322    35788888899999999988763   46777777766655

>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]

Probab=95.78  E-value=0.53  Score=53.66  Aligned_cols=181  Identities=11%  Similarity=0.146  Sum_probs=105.5

Q ss_pred             HHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccchh-hHHHHHHHHHhhccCCChhHHHHHHHHHHHhhhhhcCCc
Q 046417           55 FSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSP-HLSKMISTVSCRLRDPDSSVRSACVAATTAMSLNITKPS  133 (595)
Q Consensus        55 lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~P-hLpkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~~~~  133 (595)
                      +..|.+.|.+-.++---.+--++.+++-.+++-.   +.+ .+...+..+--.|+-+....|-++...|.+||....  .
T Consensus       262 ~~q~rpfL~~wls~k~emV~lE~Ar~v~~~~~~n---v~~~~~~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P--~  336 (898)
T COG5240         262 LLQLRPFLNSWLSDKFEMVFLEAARAVCALSEEN---VGSQFVDQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYP--Q  336 (898)
T ss_pred             HHHHHHHHHHHhcCcchhhhHHHHHHHHHHHHhc---cCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCC--c
Confidence            5566666665544322466777888877666644   433 456677788888999999999999999999998663  2


Q ss_pred             chhccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHhhcccC
Q 046417          134 FSVLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNPEVEQLRKLLPRLGKAVRIEGFKAKAAVLGVIGSVVRVGGARS  213 (595)
Q Consensus       134 ~~~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d~~~~~L~~Ll~rL~klL~~~~~kaK~alLsAIgSlA~a~g~~~  213 (595)
                      .+..+.|=++.|..+.|+.+.   -+|+..++-.-.+.-+..|-.+++.++.=. +++|+  -.+++||.++.-    .|
T Consensus       337 kv~vcN~evEsLIsd~Nr~Is---tyAITtLLKTGt~e~idrLv~~I~sfvhD~-SD~FK--iI~ida~rsLsl----~F  406 (898)
T COG5240         337 KVSVCNKEVESLISDENRTIS---TYAITTLLKTGTEETIDRLVNLIPSFVHDM-SDGFK--IIAIDALRSLSL----LF  406 (898)
T ss_pred             eeeecChhHHHHhhcccccch---HHHHHHHHHcCchhhHHHHHHHHHHHHHhh-ccCce--EEeHHHHHHHHh----hC
Confidence            335788999999888888754   455555554422322223333333333322 23443  355677776662    22


Q ss_pred             cCcHHhHHHHHHHhcc-CCCHHHHHHHHHHHHHHHHHh
Q 046417          214 KGVLDWLVPCLVEFLC-CDDWATRKAAAEVLGKVAVFD  250 (595)
Q Consensus       214 ~~yl~~lmp~L~e~L~-~dDW~~RkaAaEaLgsIA~av  250 (595)
                      +.--...+..|...|- ...+.-++++.|+|..+....
T Consensus       407 p~k~~s~l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~~  444 (898)
T COG5240         407 PSKKLSYLDFLGSSLLQEGGLEFKKYMVDAISDAMEND  444 (898)
T ss_pred             cHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHhhC
Confidence            2211222233333332 234555666666666655544

>KOG4653 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.66  E-value=1.1  Score=53.12  Aligned_cols=226  Identities=12%  Similarity=0.076  Sum_probs=141.5

Q ss_pred             HHHHHHhhhcCCCC--hHHHHHHHHHHHHHhCCcCc---HHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccchhh
Q 046417           21 QRVITCLNKLADRD--TLPVATAELESIARTLTQDS---FSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPH   95 (595)
Q Consensus        21 ~rvl~~L~KL~DrD--T~r~A~~~LD~lA~~L~~~~---lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~Ph   95 (595)
                      .+.-.+++.+.|..  +...|+..|..++++=.+..   ..-+|....++..+.++++=-.||+.+..++|.+++.|.| 
T Consensus       727 e~~qeai~sl~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~e~il~-  805 (982)
T KOG4653|consen  727 EPLQEAISSLHDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYPEDILP-  805 (982)
T ss_pred             HHHHHHHHHhcCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcchhhHH-
Confidence            34555667776655  66679999999888532211   3345555566666678999999999999999999998877 


Q ss_pred             HHHHHHHHHhhccCCChhHHHHHHHHHHHhhhhhcCCcch-hccHHHHHHHhh---cCChhHHHHHHHHHHHHHhcCCCc
Q 046417           96 LSKMISTVSCRLRDPDSSVRSACVAATTAMSLNITKPSFS-VLSKPLIELILV---EQDVNSQVGGAMCLAAAIDAAPNP  171 (595)
Q Consensus        96 LpkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~~~~~~-~~l~PLi~aLl~---d~nk~VQ~~AA~cLaaviE~a~d~  171 (595)
                        .+..+....=+-+.+.-|--.=+++++++....  +.. .|..+|+...+.   +++-..-+.++..|..++.-..-.
T Consensus       806 --dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~G--el~~~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~  881 (982)
T KOG4653|consen  806 --DLSEEYLSEKKKLQTDYRLKVGEAILKVAQALG--ELVFKYKAVLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQ  881 (982)
T ss_pred             --HHHHHHHhcccCCCccceehHHHHHHHHHHHhc--cHHHHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhh
Confidence              455555444333322222222266666666553  222 266677766543   444333555555566667664333


Q ss_pred             hHHHHHHHHHHHHHhhccC-chhHHHHHHHHHHHHHHhhcccCcCcH----HhHHHHHHHhcc-CCCHHHHHHHHHHHHH
Q 046417          172 EVEQLRKLLPRLGKAVRIE-GFKAKAAVLGVIGSVVRVGGARSKGVL----DWLVPCLVEFLC-CDDWATRKAAAEVLGK  245 (595)
Q Consensus       172 ~~~~L~~Ll~rL~klL~~~-~~kaK~alLsAIgSlA~a~g~~~~~yl----~~lmp~L~e~L~-~dDW~~RkaAaEaLgs  245 (595)
                      .-..+.++...+..+.... .+.+|-+++..|..+-..-|....|++    -.+...+..+.. ++|-.+|..|..||-.
T Consensus       882 vsd~~~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~klhaql~lee  961 (982)
T KOG4653|consen  882 VSDFFHEVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQHDDDGLKLHAQLCLEE  961 (982)
T ss_pred             hhHHHHHHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHH
Confidence            3346777777777777654 777888888888877765454333422    223333334433 5666889999999998


Q ss_pred             HHHHhH
Q 046417          246 VAVFDK  251 (595)
Q Consensus       246 IA~avg  251 (595)
                      |-.++.
T Consensus       962 i~a~l~  967 (982)
T KOG4653|consen  962 IQAALE  967 (982)
T ss_pred             HHHHHH
Confidence            877765

>KOG2933 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.62  E-value=0.11  Score=55.03  Aligned_cols=169  Identities=14%  Similarity=0.144  Sum_probs=119.4

Q ss_pred             HHHHHhhhcCCCChHHH--HHHHHHHHHHhCCcCc----HHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccchhh
Q 046417           22 RVITCLNKLADRDTLPV--ATAELESIARTLTQDS----FSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPH   95 (595)
Q Consensus        22 rvl~~L~KL~DrDT~r~--A~~~LD~lA~~L~~~~----lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~Ph   95 (595)
                      -+.+.|.+|++.|...-  ++..|..++.-= ++.    +...+-.|.....+..+.+=|++|..++.|.+...+.|...
T Consensus        89 al~~~l~~L~s~dW~~~vdgLn~irrLs~fh-~e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~~  167 (334)
T KOG2933|consen   89 ALKQALKKLSSDDWEDKVDGLNSIRRLSEFH-PESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQE  167 (334)
T ss_pred             HHHHHHHHhchHHHHHHhhhHHHHHHHHhhh-HHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45678888888774433  555555555432 233    22233333444677889999999999999999999999888


Q ss_pred             HHHHHHHHHhhccCCChhHHHHHHHHHHHhhhhhcCCcchhccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCCCch--H
Q 046417           96 LSKMISTVSCRLRDPDSSVRSACVAATTAMSLNITKPSFSVLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNPE--V  173 (595)
Q Consensus        96 LpkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~~~~~~~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d~~--~  173 (595)
                      |..++-.+..+-.+..--||+++-.+|-.|..+...+   .++.-|+..+ ...++.+-..+|.|+-..+.-.+...  .
T Consensus       168 ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~---~~L~~L~~~~-~~~n~r~r~~a~~~~~~~v~rl~v~~~~~  243 (334)
T KOG2933|consen  168 LDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQ---KLLRKLIPIL-QHSNPRVRAKAALCFSRCVIRLGVLPVLL  243 (334)
T ss_pred             HHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccChH---HHHHHHHHHH-hhhchhhhhhhhccccccceeccccchhh
Confidence            8888888888887788889999999999999987421   2555566666 67888899999999888887754222  3


Q ss_pred             HHHHHHHHHHHHhhccCchhHH
Q 046417          174 EQLRKLLPRLGKAVRIEGFKAK  195 (595)
Q Consensus       174 ~~L~~Ll~rL~klL~~~~~kaK  195 (595)
                      ++..++.+.+..-+.+..+..+
T Consensus       244 ~~~~dl~~a~~~~~~d~Lp~~~  265 (334)
T KOG2933|consen  244 QGSCDLSRAAQEQGSDKLPELR  265 (334)
T ss_pred             HhHHHHHHHHHhhhcccccccc
Confidence            4555666666555555544433

>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []

Probab=95.59  E-value=0.46  Score=52.91  Aligned_cols=221  Identities=11%  Similarity=0.126  Sum_probs=125.8

Q ss_pred             HHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccchhhHHHHHHHHHhhccCC-ChhHHHHHHHHHHHhhhhhcCC-
Q 046417           55 FSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPHLSKMISTVSCRLRDP-DSSVRSACVAATTAMSLNITKP-  132 (595)
Q Consensus        55 lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~PhLpkIL~~IvrrLkD~-ds~VR~Ac~~aLg~LA~~l~~~-  132 (595)
                      +..++..|....+..+...=|..+|.+.++-++........|.+++..+..-.+.| +|..-.=+-+++|.+.++.++. 
T Consensus        28 l~~Lf~~i~~~~s~ENeylMk~iMRvl~~~~e~~~p~~~~il~~L~~il~~v~kNPsnP~FnHylFEsi~~lir~~~~~~  107 (435)
T PF03378_consen   28 LQNLFALIEKPGSAENEYLMKCIMRVLSVLQEDILPIAVEILQHLTAILKEVSKNPSNPRFNHYLFESIGALIRFVCEAD  107 (435)
T ss_dssp             HHHHHHHHHTT-STC-HHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHHHHHHTS---HHHHHHHHHHHHHHHHHS-GGG
T ss_pred             HHHHHHHHhcCCCccchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHhccCCC
Confidence            44555555443345567888888888888777776555555555555555555555 6888999999999999987742 


Q ss_pred             cc-----hhccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHH
Q 046417          133 SF-----SVLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAP-NPEVEQLRKLLPRLGKAVRIEGFKAKAAVLGVIGSVV  206 (595)
Q Consensus       133 ~~-----~~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~-d~~~~~L~~Ll~rL~klL~~~~~kaK~alLsAIgSlA  206 (595)
                      +.     ...+-|.|..++.+.-.-..--..--|+-++|..+ ..+.+....|.+.|+.---|....--++++-.+.++.
T Consensus       108 ~~~v~~~E~~L~P~f~~ILq~dV~EF~PYvfQIla~Lle~~~~~~~p~~y~~L~~~Ll~p~lWe~~gniPalvrLL~a~i  187 (435)
T PF03378_consen  108 PEAVSQFEEALFPPFQEILQQDVQEFIPYVFQILAQLLELRPSSPLPDAYKQLFPPLLSPALWERRGNIPALVRLLQAYI  187 (435)
T ss_dssp             HH---HHHHHHHHHHHHHHHTT-TTTHHHHHHHHHHHHHHSS--S--TTTGGGHHHHTSGGGGGSTTTHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHcCcchhccCCCcCcHHHHHHHHH
Confidence            22     22344444444442211111122223566677754 3333445556666555554543333367788888877


Q ss_pred             HhhcccC--cCcHHhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhH-HhHHHHHHHHHHH----HHhccCCchHHHHHH
Q 046417          207 RVGGARS--KGVLDWLVPCLVEFLCCDDWATRKAAAEVLGKVAVFDK-DLATEYKRSCLAA----LETRRFDKVKIVRET  279 (595)
Q Consensus       207 ~a~g~~~--~~yl~~lmp~L~e~L~~dDW~~RkaAaEaLgsIA~avg-e~f~py~~~~I~~----Le~crfDKVK~VRda  279 (595)
                      ..+...+  .+.++.++...+..+.+..-.  -.+++.|.+|-..+. +.+.+|...++.+    |.+.|-+  |.||.-
T Consensus       188 ~k~~~~i~~~~~l~~iLgvFQkLi~sk~~D--~~gF~LL~~iv~~~p~~~l~~yl~~I~~lll~RLq~skT~--kf~~~f  263 (435)
T PF03378_consen  188 KKDPSFIVANNQLEPILGVFQKLIASKAND--HYGFDLLESIVENLPPEALEPYLKQIFTLLLTRLQSSKTE--KFVKRF  263 (435)
T ss_dssp             HHHGGG----S-CHHHHHHHHHHHT-TTCH--HHHHHHHHHHHHHS-HHHHGGGHHHHHHHHHHHHHHC--H--HHHHHH
T ss_pred             HhCchhhcchhhHHHHHHHHHHHHCCCCcc--hHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhCCcH--HHHHHH
Confidence            7554432  467788888888888653111  238899999999885 6788887766655    4444444  344443

CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.

>KOG4653 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.58  E-value=1.5  Score=51.94  Aligned_cols=195  Identities=13%  Similarity=0.121  Sum_probs=139.5

Q ss_pred             HHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccchhhHHHHHHHHHhhccCCChhHHHHHHHHHHHhhhhhcCCcc
Q 046417           55 FSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPHLSKMISTVSCRLRDPDSSVRSACVAATTAMSLNITKPSF  134 (595)
Q Consensus        55 lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~PhLpkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~~~~~  134 (595)
                      +.++=..|.. ..++-++.|-+++.-|.-+.|--...-.-+..+++...+..|+|-|+-|.--|..++..|++...+   
T Consensus       726 ~e~~qeai~s-l~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~e---  801 (982)
T KOG4653|consen  726 IEPLQEAISS-LHDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYPE---  801 (982)
T ss_pred             HHHHHHHHHH-hcCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcch---
Confidence            3334444443 344568999999999999999553333445679999999999999999999999999999987632   


Q ss_pred             hhccHHHHHHHhhcCChh-----HHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHhh
Q 046417          135 SVLSKPLIELILVEQDVN-----SQVGGAMCLAAAIDAAPNPEVEQLRKLLPRLGKAVRIEGFKAKAAVLGVIGSVVRVG  209 (595)
Q Consensus       135 ~~~l~PLi~aLl~d~nk~-----VQ~~AA~cLaaviE~a~d~~~~~L~~Ll~rL~klL~~~~~kaK~alLsAIgSlA~a~  209 (595)
                       .+++-|.+.=....++.     .-+|  -|+-++++..++....|...|...+++-.+.|.-.-|+..++.+|-+-+.-
T Consensus       802 -~il~dL~e~Y~s~k~k~~~d~~lkVG--Eai~k~~qa~Gel~~~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~  878 (982)
T KOG4653|consen  802 -DILPDLSEEYLSEKKKLQTDYRLKVG--EAILKVAQALGELVFKYKAVLINTFLSGVREPDHEFRASSLANLGQLCQLL  878 (982)
T ss_pred             -hhHHHHHHHHHhcccCCCccceehHH--HHHHHHHHHhccHHHHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHH
Confidence             24555555332333322     2334  556788888888888899999999999999887667778888888777643


Q ss_pred             cccCcCcHHhHHHHHHHhc-cCCCHHHHHHHHHHHHHHHHHhHHhHHH
Q 046417          210 GARSKGVLDWLVPCLVEFL-CCDDWATRKAAAEVLGKVAVFDKDLATE  256 (595)
Q Consensus       210 g~~~~~yl~~lmp~L~e~L-~~dDW~~RkaAaEaLgsIA~avge~f~p  256 (595)
                      .-....+|-.++..+.... .++.-.+|.+|+..|..+-...|.-+.|
T Consensus       879 a~~vsd~~~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLp  926 (982)
T KOG4653|consen  879 AFQVSDFFHEVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLP  926 (982)
T ss_pred             hhhhhHHHHHHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHH
Confidence            2111124555566666555 3778899999999999998888865555

>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]

Probab=95.51  E-value=3.3  Score=48.70  Aligned_cols=232  Identities=14%  Similarity=0.126  Sum_probs=140.5

Q ss_pred             HHHHHHhhhhcCCC----CChHHHHHHHHHHHHHHHHccccchh---hHHH-HHHHHHhhccCCChhHHHHHHHHHHHhh
Q 046417           55 FSSFLNCLQTTDSS----SKSPVRKQCVNLLTLLSRSHGDSLSP---HLSK-MISTVSCRLRDPDSSVRSACVAATTAMS  126 (595)
Q Consensus        55 lp~fL~~L~d~~ss----~kp~vRKaaI~lLG~lAEg~gd~I~P---hLpk-IL~~IvrrLkD~ds~VR~Ac~~aLg~LA  126 (595)
                      ++.+++.|.++..+    +++...+.|++.|+.+-. .-+...|   -+.. |+++++..++++---++.-+|+.+..+.
T Consensus       410 Lsf~~sil~qsaa~psn~dnarq~egalr~lasi~s-~itk~sp~an~me~fiv~hv~P~f~s~ygfL~Srace~is~~e  488 (970)
T COG5656         410 LSFLLSILGQSAATPSNIDNARQAEGALRLLASIKS-FITKMSPAANVMEYFIVNHVIPAFRSNYGFLKSRACEFISTIE  488 (970)
T ss_pred             HHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHH-HhccCchHHHHHHHHHHHHhhHhhcCcccchHHHHHHHHHHHH
Confidence            44444444343322    457888999999988887 3333333   3444 3678888899998889999999999997


Q ss_pred             hhhcCCcchh-ccHHHHHHHhhcCChhHHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHHhhccCchhHHHHHHHHHH
Q 046417          127 LNITKPSFSV-LSKPLIELILVEQDVNSQVGGAMCLAAAIDAA--PNPEVEQLRKLLPRLGKAVRIEGFKAKAAVLGVIG  203 (595)
Q Consensus       127 ~~l~~~~~~~-~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a--~d~~~~~L~~Ll~rL~klL~~~~~kaK~alLsAIg  203 (595)
                      ....+..... .+......| .++.-.|++-||+||.-++-+.  .+..-.+++..|++|+.+-  +.|..- .+-.++-
T Consensus       489 eDfkd~~ill~aye~t~ncl-~nn~lpv~ieAalAlq~fi~~~q~h~k~sahVp~tmekLLsLS--n~feiD-~LS~vMe  564 (970)
T COG5656         489 EDFKDNGILLEAYENTHNCL-KNNHLPVMIEAALALQFFIFNEQSHEKFSAHVPETMEKLLSLS--NTFEID-PLSMVME  564 (970)
T ss_pred             HhcccchHHHHHHHHHHHHH-hcCCcchhhhHHHHHHHHHhchhhhHHHHhhhhHHHHHHHHhc--ccccch-HHHHHHH
Confidence            7775432111 444444555 4577789999999999998763  3444578888999988887  333311 1223333


Q ss_pred             HHHHhhcccCcCcHHhHHHHHHHh--------ccCC-------CHHHHHHHHHHHHHHHHHhH-----------------
Q 046417          204 SVVRVGGARSKGVLDWLVPCLVEF--------LCCD-------DWATRKAAAEVLGKVAVFDK-----------------  251 (595)
Q Consensus       204 SlA~a~g~~~~~yl~~lmp~L~e~--------L~~d-------DW~~RkaAaEaLgsIA~avg-----------------  251 (595)
                      +++..-.....||...++..|.+.        +..+       | ..-.+|.-.|.++-+.+-                 
T Consensus       565 ~fVe~fseELspfa~eLa~~Lv~qFlkiaq~l~ens~d~~s~vD-DKqmaasGiL~T~~smiLSlen~p~vLk~le~sly  643 (970)
T COG5656         565 SFVEYFSEELSPFAPELAGSLVRQFLKIAQSLLENSSDTSSVVD-DKQMAASGILRTIESMILSLENRPLVLKYLEVSLY  643 (970)
T ss_pred             HHHHHhHHhhchhHHHHHHHHHHHHHHHHHHHHcCCcccccccc-HHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence            333322233468888888877762        1111       2 334455555555544331                 


Q ss_pred             --------HhHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHhHhcCCC
Q 046417          252 --------DLATEYKRSCLAALETRRFDKVKIVRETMNRSLEMWKEVPGV  293 (595)
Q Consensus       252 --------e~f~py~~~~I~~Le~crfDKVK~VRda~~~aL~~~K~i~~~  293 (595)
                              +....|-.+|+.+++.|-|= .|.+--+|.--.+++.+++..
T Consensus       644 pvi~Filkn~i~dfy~Ea~dildg~tf~-skeI~pimwgi~Ell~~~l~~  692 (970)
T COG5656         644 PVISFILKNEISDFYQEALDILDGYTFM-SKEIEPIMWGIFELLLNLLID  692 (970)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHhhhhHH-HHHhhhhhhHHHHHHHhcccc
Confidence                    11233446788888888442 244445666666666666655

>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=95.34  E-value=4.1  Score=48.66  Aligned_cols=268  Identities=17%  Similarity=0.175  Sum_probs=161.2

Q ss_pred             HHHHHHHHHhhh--cC--CCChHHHHHHHHHHHHHhCC--cCcHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHcccc
Q 046417           18 DLKQRVITCLNK--LA--DRDTLPVATAELESIARTLT--QDSFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDS   91 (595)
Q Consensus        18 ~lk~rvl~~L~K--L~--DrDT~r~A~~~LD~lA~~L~--~~~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~   91 (595)
                      .|-.|+++-...  ++  .-+..+.+...+..++.-|.  |-.|++.|+.|.+...  ++..-.+++.-+-.+||.|.+.
T Consensus       504 ~~i~rl~~~~asik~S~~n~ql~~Tss~~igs~s~~l~e~P~~ln~sl~~L~~~Lh--~sk~s~q~i~tl~tlC~~C~~~  581 (982)
T KOG2022|consen  504 TWIPRLFETSASIKLSAPNPQLLSTSSDLIGSLSNWLGEHPMYLNPSLPLLFQGLH--NSKESEQAISTLKTLCETCPES  581 (982)
T ss_pred             HHHHHHHHhccccccccCChhHHHHHHHHHHHHHHHHhcCCcccCchHHHHHHHhc--CchHHHHHHHHHHHHHHhhhhh
Confidence            344555554433  34  56788899999999998885  4447777887777653  3455567888899999999999


Q ss_pred             chhhHHHHHHHHHhhccCCC--hhHHHHHHHHHHHhhhhhcCCcch-----hccHHHHHHHhhc-----CChh------H
Q 046417           92 LSPHLSKMISTVSCRLRDPD--SSVRSACVAATTAMSLNITKPSFS-----VLSKPLIELILVE-----QDVN------S  153 (595)
Q Consensus        92 I~PhLpkIL~~IvrrLkD~d--s~VR~Ac~~aLg~LA~~l~~~~~~-----~~l~PLi~aLl~d-----~nk~------V  153 (595)
                      +.||+..++.+.-..+.-..  .++|.....++|-+-..+. ++++     .++.|++..|-..     +++.      .
T Consensus       582 L~py~d~~~a~~~e~l~~~~~~~S~~~klm~sIGyvls~~~-pEe~~kyl~~lin~il~qle~~l~~~i~~~e~~l~~~~  660 (982)
T KOG2022|consen  582 LDPYADQFSAVCYEVLNKSNAKDSDRLKLMKSIGYVLSRLK-PEEIPKYLMKLINPILSQLEINLAPGIDDQENHLRIAF  660 (982)
T ss_pred             CchHHHHHHHHHHHHhcccccCchHHHHHHHHHHHHHHhcc-HHhHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHH
Confidence            99999999998887775532  4578888888888776663 2222     2566666666211     1111      2


Q ss_pred             HHHHHHHHHHHHhcC-----CC------------chHHHHHHHHHHHHHhhccCchhHH-HHHHHHHHHHHHhh----cc
Q 046417          154 QVGGAMCLAAAIDAA-----PN------------PEVEQLRKLLPRLGKAVRIEGFKAK-AAVLGVIGSVVRVG----GA  211 (595)
Q Consensus       154 Q~~AA~cLaaviE~a-----~d------------~~~~~L~~Ll~rL~klL~~~~~kaK-~alLsAIgSlA~a~----g~  211 (595)
                      |..+..+|..-..+.     .+            +++..+.+++|-|-+.+..-   ++ ..+++++..+...|    +.
T Consensus       661 ~l~~iS~LftSL~~~~~~~d~d~~~~~~~~~qq~~il~v~~k~i~~~~kv~s~~---~~~s~vve~~C~i~~~~v~~~~~  737 (982)
T KOG2022|consen  661 QLNTISALFTSLINKKDIIDTDQPEQREEPFQQFPILQVLQKAIPVFEKVLSMW---LGLSDVVEASCIIMVKGVRSLLT  737 (982)
T ss_pred             HHHHHHHHHhccCCCCccccccchhhhccccccCCHHHHHHHHHHHHHHHHHHH---hcchhHHHHHHHHHHhccccccc
Confidence            344444444432221     01            23456677888777777411   11 34455555555443    22


Q ss_pred             cC-cCcHHhHHHHHHHhccCCCHHHHHHHHHHHHHHHHH-------hHH----hHHHHHHHHHHHHHhccC-CchHHHHH
Q 046417          212 RS-KGVLDWLVPCLVEFLCCDDWATRKAAAEVLGKVAVF-------DKD----LATEYKRSCLAALETRRF-DKVKIVRE  278 (595)
Q Consensus       212 ~~-~~yl~~lmp~L~e~L~~dDW~~RkaAaEaLgsIA~a-------vge----~f~py~~~~I~~Le~crf-DKVK~VRd  278 (595)
                      .| .|+++.+++.+..+.+...-     ++..+++.+..       +++    .|.......+.+++.--| +-+-.+-.
T Consensus       738 sF~~p~l~~l~~Fi~r~~~~~~a-----~tl~l~~~~l~~~~~~~~~~~lv~~~~~~~~q~sl~lf~~~~f~n~~Di~~~  812 (982)
T KOG2022|consen  738 SFPEPMLPSLCPFIVRFLTSCLA-----VTLSLIAACLLAKSTVEQCKPLVGQDMANAFQQSLLLFEQHPFSNQPDIYLQ  812 (982)
T ss_pred             cchhhhHHHHHHHHHHhccchHH-----HHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHHhccCCCCCchHHHH
Confidence            35 66677777777776655432     22223322221       122    344455667777887653 33444444


Q ss_pred             HHHHHHHHhHhcCCCCCC
Q 046417          279 TMNRSLEMWKEVPGVCEE  296 (595)
Q Consensus       279 a~~~aL~~~K~i~~~~~~  296 (595)
                      -+---=+.||.+|+--++
T Consensus       813 ~~~~v~~ilkk~P~~~~~  830 (982)
T KOG2022|consen  813 LIGFVRQILKKIPKFLEP  830 (982)
T ss_pred             HHHHHHHHHHhCcCcccc
Confidence            444445788999977543

>PF13251 DUF4042: Domain of unknown function (DUF4042)

Probab=95.29  E-value=0.24  Score=49.01  Aligned_cols=137  Identities=21%  Similarity=0.193  Sum_probs=97.5

Q ss_pred             HHHHHHHHHHHhhhhhcCC----------cch-----hccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCCCch------
Q 046417          114 VRSACVAATTAMSLNITKP----------SFS-----VLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNPE------  172 (595)
Q Consensus       114 VR~Ac~~aLg~LA~~l~~~----------~~~-----~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d~~------  172 (595)
                      ||.++...|..++..+...          |..     ..-.+|+..++.|.++.+..+|+.+|+.++|+.....      
T Consensus         2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~   81 (182)
T PF13251_consen    2 VRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEES   81 (182)
T ss_pred             hhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhc
Confidence            7888998988888775331          111     1445677788789999999999999999998842110      


Q ss_pred             --------------HHHHHHHHHHHHHhhccC-chhHHHHHHHHHHHHHHhh--cccCcCcHHhHHHHHHHhccCCCHHH
Q 046417          173 --------------VEQLRKLLPRLGKAVRIE-GFKAKAAVLGVIGSVVRVG--GARSKGVLDWLVPCLVEFLCCDDWAT  235 (595)
Q Consensus       173 --------------~~~L~~Ll~rL~klL~~~-~~kaK~alLsAIgSlA~a~--g~~~~~yl~~lmp~L~e~L~~dDW~~  235 (595)
                                    ..++..+=..|..+|..+ +..+-.+++-+++.++++-  ...-.+++..++..+..++.+.|-.+
T Consensus        82 ~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~v  161 (182)
T PF13251_consen   82 KGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPNV  161 (182)
T ss_pred             CCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCcH
Confidence                          012223334444555554 5556678888888888753  22235778888999999999999999


Q ss_pred             HHHHHHHHHHHHHHh
Q 046417          236 RKAAAEVLGKVAVFD  250 (595)
Q Consensus       236 RkaAaEaLgsIA~av  250 (595)
                      |.+++-||+.+..+.
T Consensus       162 ~v~~l~~~~~l~s~~  176 (182)
T PF13251_consen  162 RVAALSCLGALLSVQ  176 (182)
T ss_pred             HHHHHHHHHHHHcCC
Confidence            999999999987653

>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function

Probab=95.23  E-value=0.42  Score=49.53  Aligned_cols=180  Identities=13%  Similarity=0.131  Sum_probs=117.7

Q ss_pred             HHHHhhccC-CChhHHHHHHHHHHHhhhhhcCCcch--hccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCCC--chHHH
Q 046417          101 STVSCRLRD-PDSSVRSACVAATTAMSLNITKPSFS--VLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPN--PEVEQ  175 (595)
Q Consensus       101 ~~IvrrLkD-~ds~VR~Ac~~aLg~LA~~l~~~~~~--~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d--~~~~~  175 (595)
                      ..++..|+. .||.+++.+..++|..+.+-..+..+  .=..+++..|+.++++.++..|..||+.+-.+...  .+..|
T Consensus        15 ~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~~Ik~~   94 (254)
T PF04826_consen   15 QKLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQEQIKMY   94 (254)
T ss_pred             HHHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHHHHHHH
Confidence            344445554 57899999999999988764333222  13456777777889999999999999876544322  22357


Q ss_pred             HHHHHHHHHHhhccCchhHHHHHHHHHHHHHHhhcccCcCcHHhHHHHHHHhccCCCHHHHHHHHHHHHHHHH---HhHH
Q 046417          176 LRKLLPRLGKAVRIEGFKAKAAVLGVIGSVVRVGGARSKGVLDWLVPCLVEFLCCDDWATRKAAAEVLGKVAV---FDKD  252 (595)
Q Consensus       176 L~~Ll~rL~klL~~~~~kaK~alLsAIgSlA~a~g~~~~~yl~~lmp~L~e~L~~dDW~~RkaAaEaLgsIA~---avge  252 (595)
                      +.++|..+...  .-+..++.+.+.++..+..  ...++..+...+|.|.+.|...+-.+|.-++.+|..++.   ..++
T Consensus        95 i~~Vc~~~~s~--~lns~~Q~agLrlL~nLtv--~~~~~~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~np~~~~~  170 (254)
T PF04826_consen   95 IPQVCEETVSS--PLNSEVQLAGLRLLTNLTV--TNDYHHMLANYIPDLLSLLSSGSEKTKVQVLKVLVNLSENPDMTRE  170 (254)
T ss_pred             HHHHHHHHhcC--CCCCHHHHHHHHHHHccCC--CcchhhhHHhhHHHHHHHHHcCChHHHHHHHHHHHHhccCHHHHHH
Confidence            77777765442  1144556677777776642  222345566778889999988888899999999999976   2345


Q ss_pred             hHHHHH-HHHHHHHHhccCCchHHHHHHHHHHHHHhHhc
Q 046417          253 LATEYK-RSCLAALETRRFDKVKIVRETMNRSLEMWKEV  290 (595)
Q Consensus       253 ~f~py~-~~~I~~Le~crfDKVK~VRda~~~aL~~~K~i  290 (595)
                      .+..-. ..++..|+.+      .=++...++|-....|
T Consensus       171 Ll~~q~~~~~~~Lf~~~------~~~~~l~~~l~~~~ni  203 (254)
T PF04826_consen  171 LLSAQVLSSFLSLFNSS------ESKENLLRVLTFFENI  203 (254)
T ss_pred             HHhccchhHHHHHHccC------CccHHHHHHHHHHHHH
Confidence            554432 4556666633      3455666666666665

>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]

Probab=95.16  E-value=0.15  Score=60.29  Aligned_cols=178  Identities=13%  Similarity=0.163  Sum_probs=118.2

Q ss_pred             hHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHhCC--------------------cCcHHHHHHhhhhcCCCCChHHHHH
Q 046417           17 NDLKQRVITCLNKLADRDTLPVATAELESIARTLT--------------------QDSFSSFLNCLQTTDSSSKSPVRKQ   76 (595)
Q Consensus        17 ~~lk~rvl~~L~KL~DrDT~r~A~~~LD~lA~~L~--------------------~~~lp~fL~~L~d~~ss~kp~vRKa   76 (595)
                      .++-.+++.+|   ++..+-..|+..++.+...-+                    .+.+|.+++.+..    ....+|-.
T Consensus       814 ~~ia~klld~L---s~~~~g~~aa~~fsiim~D~~~~~~r~~~a~~riLykQRfF~~ivP~l~~~~~t----~~~~~K~~  886 (1030)
T KOG1967|consen  814 SEIAEKLLDLL---SGPSTGSPAAKLFSIIMSDSNPLLKRKGHAEPRILYKQRFFCDIVPILVSKFET----APGSQKHN  886 (1030)
T ss_pred             chHHHHHHHhc---CCccccchHHHhhHhhhccChHHhhhccccchhHHHHHHHHHhhHHHHHHHhcc----CCccchhH
Confidence            35566666554   456666777777776655432                    1224444555542    22334444


Q ss_pred             HHHHHHHHHHHcc-ccchhhHHHHHHHHHhhccCCChhHHHHHHHHHHHhhhhhcCCcchh-ccHHHHHHHh---hc--C
Q 046417           77 CVNLLTLLSRSHG-DSLSPHLSKMISTVSCRLRDPDSSVRSACVAATTAMSLNITKPSFSV-LSKPLIELIL---VE--Q  149 (595)
Q Consensus        77 aI~lLG~lAEg~g-d~I~PhLpkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~~~~~~~-~l~PLi~aLl---~d--~  149 (595)
                      -+.+|.-+-..-+ ..+.|++|.++|.+++.|.=||..||--+..++.-+-....  .... ++.-++..|+   .+  +
T Consensus       887 yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~--tL~t~~~~Tlvp~lLsls~~~~n  964 (1030)
T KOG1967|consen  887 YLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESE--TLQTEHLSTLVPYLLSLSSDNDN  964 (1030)
T ss_pred             HHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhcc--ccchHHHhHHHHHHHhcCCCCCc
Confidence            4455544444444 77799999999999999999999999888777655554331  2221 3444444443   23  2


Q ss_pred             C-hhHHHHHHHHHHHHHhcCCCc-hHHHHHHHHHHHHHhhccCchhHHHHHHHHHH
Q 046417          150 D-VNSQVGGAMCLAAAIDAAPNP-EVEQLRKLLPRLGKAVRIEGFKAKAAVLGVIG  203 (595)
Q Consensus       150 n-k~VQ~~AA~cLaaviE~a~d~-~~~~L~~Ll~rL~klL~~~~~kaK~alLsAIg  203 (595)
                      | ..|-..|--||.++.+-.+.. +.+|-++++..|.+.|+++.+.+|..++++=+
T Consensus       965 ~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~tR~ 1020 (1030)
T KOG1967|consen  965 NMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDTRQ 1020 (1030)
T ss_pred             chhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHHhh
Confidence            2 568899999999999976544 36888999999999999999999988776644

>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=95.14  E-value=1.2  Score=55.64  Aligned_cols=218  Identities=18%  Similarity=0.147  Sum_probs=142.4

Q ss_pred             CChhHHHHHHHHHhhhcCCCC--hHHHHHHHHHHHHHhCCcCcHH----HHHHhhhhcCCCCChHHHHHHHHHHHHHHHH
Q 046417           14 PSTNDLKQRVITCLNKLADRD--TLPVATAELESIARTLTQDSFS----SFLNCLQTTDSSSKSPVRKQCVNLLTLLSRS   87 (595)
Q Consensus        14 ~~~~~lk~rvl~~L~KL~DrD--T~r~A~~~LD~lA~~L~~~~lp----~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg   87 (595)
                      +...++...+..++-||+=||  |.--|+++|-.+......+.+-    .+.-.+.+..-+++..+|......+..+...
T Consensus        34 ~~~~~~dsel~~I~kkL~KkD~~TK~KaL~eL~eli~~~~~e~~~~il~~w~~i~~kl~~d~~~~VR~~t~~v~s~l~t~  113 (1312)
T KOG0803|consen   34 PFVLELDSELDIIVKKLLKRDETTKIKALQELSELIDTSDTEELKGILPEWLVIYAKLIIDEDRTVRLLTHDVFSKLLTK  113 (1312)
T ss_pred             hHHhccCHHHHHHHHHHhccChHHHHHHHHhHHHhcccccchHHhhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHH
Confidence            334568889999999999888  6777999999999988755533    3334445555677889999999999999999


Q ss_pred             ccccchhhHHHHHHHHHhhccCCChhHHHHHHHHHHHhhhhhcCCcch-hccHHHHHHHhh-------------------
Q 046417           88 HGDSLSPHLSKMISTVSCRLRDPDSSVRSACVAATTAMSLNITKPSFS-VLSKPLIELILV-------------------  147 (595)
Q Consensus        88 ~gd~I~PhLpkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~~~~~~-~~l~PLi~aLl~-------------------  147 (595)
                      +.+.++|||..+||...-...|.+..|..|+-.+.-.....- +.+.. .++.|-+..+..                   
T Consensus       114 lkk~lsp~LK~li~~wl~~~~d~~~~vs~aa~~sf~~~f~~e-k~~~v~~~c~~~i~~~~~~~~~~~~~~slSd~~~~s~  192 (1312)
T KOG0803|consen  114 LKKKLSPFLKSLIPPWLGGQFDLDYPVSEAAKASFKDGFAEE-KDRHVWFKCDPEIFYLVTEILVKETPDSLSDLRTLSS  192 (1312)
T ss_pred             HHHHhhHHHHhhhhhhhheecccchHHHHHHHHHHHhhcChh-hhHHHHHHhhHHHHHHHHHHHhccCccccchhhhcch
Confidence            999999999999999999999999999888877754333200 01111 133332222210                   


Q ss_pred             ----cCChhHHHHHHHHHHHHHh-cCCCchHH---H-HHH--HHHHHHHhhccCchhHHHHHHHHHHHHHHhhccc-CcC
Q 046417          148 ----EQDVNSQVGGAMCLAAAID-AAPNPEVE---Q-LRK--LLPRLGKAVRIEGFKAKAAVLGVIGSVVRVGGAR-SKG  215 (595)
Q Consensus       148 ----d~nk~VQ~~AA~cLaaviE-~a~d~~~~---~-L~~--Ll~rL~klL~~~~~kaK~alLsAIgSlA~a~g~~-~~~  215 (595)
                          ..-+.|-..+-.+|.++.- ...+....   . +..  --..+-++++++.-.++.++++.+-++.+..... .++
T Consensus       193 Ee~E~k~~Rvi~ssLl~l~~l~~~~~~~~el~~~~~~~kt~~s~~~fWk~~~~k~~~i~~~~~ell~~l~~~i~~~~~~~  272 (1312)
T KOG0803|consen  193 EELESKYQRVISSSLLLLLKLFKITGDEEELHSLSEKEKTFLSSEKFWKLLKSKSPSIKVALLELLLSLIDDILNRVMES  272 (1312)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHhCchHhhhhhhhhhhhhhhHHHHHHHhcCCCcchhHHHHHHHHHHHhhhHHhcchh
Confidence                1123345566666777763 33322211   1 222  2367778888888788889898888887643322 222


Q ss_pred             cHHhHHHHHHHhccCCC
Q 046417          216 VLDWLVPCLVEFLCCDD  232 (595)
Q Consensus       216 yl~~lmp~L~e~L~~dD  232 (595)
                      -...+.|.+.....+.|
T Consensus       273 ~~~~l~~~~~~~~~~~d  289 (1312)
T KOG0803|consen  273 EKNYLKPVLLGSIDSLD  289 (1312)
T ss_pred             hhhHhhHHHHccccccc
Confidence            22334455555544433

>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter

Probab=95.12  E-value=0.19  Score=49.68  Aligned_cols=115  Identities=13%  Similarity=0.059  Sum_probs=82.8

Q ss_pred             hccHHHHHHHhhcCChhHHHHHHHHHHHHHhc-CCCchHHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHH---Hhhcc
Q 046417          136 VLSKPLIELILVEQDVNSQVGGAMCLAAAIDA-APNPEVEQLRKLLPRLGKAVRIEGFKAKAAVLGVIGSVV---RVGGA  211 (595)
Q Consensus       136 ~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~-a~d~~~~~L~~Ll~rL~klL~~~~~kaK~alLsAIgSlA---~a~g~  211 (595)
                      .+|+-+++.|.....++ .--|..++..+++. .++.+.|.+++|+..|-++|++.+-.+..++|.++.-++   ...|.
T Consensus        38 ~~Lpif~dGL~Et~~Py-~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~vG~  116 (183)
T PF10274_consen   38 HYLPIFFDGLRETEHPY-RFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDMVGE  116 (183)
T ss_pred             hHHHHHHhhhhccCccH-HHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhH
Confidence            36666778884334444 34455556667777 777789999999999999999999999999999999884   44466


Q ss_pred             cCcCcHHhHHHHHHHhccCC-------C----HHHHHHHHHHHHHHHHHhH
Q 046417          212 RSKGVLDWLVPCLVEFLCCD-------D----WATRKAAAEVLGKVAVFDK  251 (595)
Q Consensus       212 ~~~~yl~~lmp~L~e~L~~d-------D----W~~RkaAaEaLgsIA~avg  251 (595)
                      +..||+.+++|.+.-|....       |    -..+-...|+|..+...-|
T Consensus       117 aLvPyyrqLLp~ln~f~~k~~n~gd~i~y~~~~~~~dlI~etL~~lE~~GG  167 (183)
T PF10274_consen  117 ALVPYYRQLLPVLNLFKNKNVNLGDGIDYRKRKNLGDLIQETLELLERNGG  167 (183)
T ss_pred             HHHHHHHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHhcC
Confidence            67899999999998665422       2    2344455566666665555

The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.

>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]

Probab=95.10  E-value=1.3  Score=50.69  Aligned_cols=238  Identities=16%  Similarity=0.162  Sum_probs=124.0

Q ss_pred             HHHHHHHHHh-CCcCcHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccc---hhhHHHHHHH---------HHhh
Q 046417           40 TAELESIART-LTQDSFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSL---SPHLSKMIST---------VSCR  106 (595)
Q Consensus        40 ~~~LD~lA~~-L~~~~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I---~PhLpkIL~~---------Ivrr  106 (595)
                      +..+-.+++. ..++-+.+.++.|.....+++...|=.|++.|..+|-..+..+   .+.+..++.-         |...
T Consensus       285 Ar~v~~~~~~nv~~~~~~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv~vcN~evEsLIsd~Nr~IstyAITtL  364 (898)
T COG5240         285 ARAVCALSEENVGSQFVDQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKVSVCNKEVESLISDENRTISTYAITTL  364 (898)
T ss_pred             HHHHHHHHHhccCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCceeeecChhHHHHhhcccccchHHHHHHH
Confidence            3334444443 3566688888888888888888999999999999999888766   3444444431         1111


Q ss_pred             ccCCCh-------------------hHHHHHHHHHHHhhhhhcCCcchhccHHHHHHHhhcCChhHHHHHHHHHHHHHhc
Q 046417          107 LRDPDS-------------------SVRSACVAATTAMSLNITKPSFSVLSKPLIELILVEQDVNSQVGGAMCLAAAIDA  167 (595)
Q Consensus       107 LkD~ds-------------------~VR~Ac~~aLg~LA~~l~~~~~~~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~  167 (595)
                      |+-...                   ...-++.+|+-.|+-....+ ...++.=|...|.++..-.-...+.-|+..+++.
T Consensus       365 LKTGt~e~idrLv~~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~k-~~s~l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~  443 (898)
T COG5240         365 LKTGTEETIDRLVNLIPSFVHDMSDGFKIIAIDALRSLSLLFPSK-KLSYLDFLGSSLLQEGGLEFKKYMVDAISDAMEN  443 (898)
T ss_pred             HHcCchhhHHHHHHHHHHHHHhhccCceEEeHHHHHHHHhhCcHH-HHHHHHHHHHHHHhcccchHHHHHHHHHHHHHhh
Confidence            221111                   11111122222222111000 0013333444443333222223333334444444


Q ss_pred             CCCchHHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHhhcccCcCcHHhHHHHHHHhccCCCHHHHHHHHHHHHHHH
Q 046417          168 APNPEVEQLRKLLPRLGKAVRIEGFKAKAAVLGVIGSVVRVGGARSKGVLDWLVPCLVEFLCCDDWATRKAAAEVLGKVA  247 (595)
Q Consensus       168 a~d~~~~~L~~Ll~rL~klL~~~~~kaK~alLsAIgSlA~a~g~~~~~yl~~lmp~L~e~L~~dDW~~RkaAaEaLgsIA  247 (595)
                      .++.-    +..+..|+..+++--|.  ..++..+|-+-.-|..+..|  ...+-.+-..+.-++--+|.+|..||...|
T Consensus       444 ~p~sk----EraLe~LC~fIEDcey~--~I~vrIL~iLG~EgP~a~~P--~~yvrhIyNR~iLEN~ivRsaAv~aLskf~  515 (898)
T COG5240         444 DPDSK----ERALEVLCTFIEDCEYH--QITVRILGILGREGPRAKTP--GKYVRHIYNRLILENNIVRSAAVQALSKFA  515 (898)
T ss_pred             CchHH----HHHHHHHHHHHhhcchh--HHHHHHHHHhcccCCCCCCc--chHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence            33311    22333333333222221  22223333221222111111  112233333333456689999999999999


Q ss_pred             HHhHHhHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHhH
Q 046417          248 VFDKDLATEYKRSCLAALETRRFDKVKIVRETMNRSLEMWK  288 (595)
Q Consensus       248 ~avge~f~py~~~~I~~Le~crfDKVK~VRda~~~aL~~~K  288 (595)
                      ....+.+.|  ..+..+|.+|--|+=--|||-+.=+|..+.
T Consensus       516 ln~~d~~~~--~sv~~~lkRclnD~DdeVRdrAsf~l~~~~  554 (898)
T COG5240         516 LNISDVVSP--QSVENALKRCLNDQDDEVRDRASFLLRNMR  554 (898)
T ss_pred             cCccccccH--HHHHHHHHHHhhcccHHHHHHHHHHHHhhh
Confidence            877776664  356678999999999999999988888776

>KOG2032 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.02  E-value=0.57  Score=52.44  Aligned_cols=57  Identities=16%  Similarity=0.140  Sum_probs=51.0

Q ss_pred             HHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccchhhHHHHHHHHHhhccCCC
Q 046417           55 FSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPHLSKMISTVSCRLRDPD  111 (595)
Q Consensus        55 lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~PhLpkIL~~IvrrLkD~d  111 (595)
                      +.-++..+.....+++...|.-|++.||.+++++++.+..|-+.++-.|++.|-|++
T Consensus       256 L~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~~  312 (533)
T KOG2032|consen  256 LGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDDL  312 (533)
T ss_pred             HHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcCC
Confidence            666777777777777779999999999999999999999999999999999999986

>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=94.98  E-value=0.63  Score=54.83  Aligned_cols=235  Identities=13%  Similarity=0.133  Sum_probs=142.0

Q ss_pred             CCCChHHH-HHHHHHHHHHhCCcCcHHHHHHhhhhc------CCCCChHHHHHHHHHHHHHHHH-----cc----ccchh
Q 046417           31 ADRDTLPV-ATAELESIARTLTQDSFSSFLNCLQTT------DSSSKSPVRKQCVNLLTLLSRS-----HG----DSLSP   94 (595)
Q Consensus        31 ~DrDT~r~-A~~~LD~lA~~L~~~~lp~fL~~L~d~------~ss~kp~vRKaaI~lLG~lAEg-----~g----d~I~P   94 (595)
                      +|-||+|- |..-+.-|.+++.....+.|-..+...      ..+-+|..+..+|-++..+|--     ||    ..+.+
T Consensus       373 sDvdTRRR~a~dlvrgL~~~fe~~vt~v~~~~v~~~l~~y~~nPS~nWk~kd~aiyL~talaik~~t~~~Gvtstn~lvd  452 (960)
T KOG1992|consen  373 SDVDTRRRAAIDLVRGLCKNFEGQVTGVFSSEVQRLLDQYSKNPSGNWKKKDRAIYLVTALAIKGQTAKHGVTSTNELVD  452 (960)
T ss_pred             CCcchhHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhccCCCccccccchhhhhhHHHHhhcchhhcceeecccccc
Confidence            58888665 555557799999754455555444333      2466799899999998888754     22    11111


Q ss_pred             ----hHHHHHHHHHhhccCCChhHHHHHHHHHHHhhhhhcCCcchhccHHHHHHHhhcCChhHHHHHHHHHHHHH---hc
Q 046417           95 ----HLSKMISTVSCRLRDPDSSVRSACVAATTAMSLNITKPSFSVLSKPLIELILVEQDVNSQVGGAMCLAAAI---DA  167 (595)
Q Consensus        95 ----hLpkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~~~~~~~~l~PLi~aLl~d~nk~VQ~~AA~cLaavi---E~  167 (595)
                          +...|+|.+...=-.+.|.++.++.+=+-.+=.++.++..+.+++-|+..| ......|..-||.|++++.   |+
T Consensus       453 v~~Ff~~~ilp~L~s~~vn~~pilka~aIKy~~~FR~ql~~~~lm~~~p~li~~L-~a~s~vvhsYAA~aiEkil~vre~  531 (960)
T KOG1992|consen  453 VVDFFANQILPDLLSPNVNEFPILKADAIKYIYTFRNQLGKEHLMALLPRLIRFL-EAESRVVHSYAAIAIEKLLTVREN  531 (960)
T ss_pred             HHHHHHHHhhHHhccCccccccchhhcccceeeeecccCChHHHHHHHHHHHHhc-cCcchHHHHHHHHHHHhccccccC
Confidence                122334444333223456677666544333333333222233555566665 5667789999999988864   33


Q ss_pred             C------CCchHHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHhhcccCcCcHHhHHHHHHHhcc----C-CCHHHH
Q 046417          168 A------PNPEVEQLRKLLPRLGKAVRIEGFKAKAAVLGVIGSVVRVGGARSKGVLDWLVPCLVEFLC----C-DDWATR  236 (595)
Q Consensus       168 a------~d~~~~~L~~Ll~rL~klL~~~~~kaK~alLsAIgSlA~a~g~~~~~yl~~lmp~L~e~L~----~-dDW~~R  236 (595)
                      +      +..+.|++..++..|++.++.+.-.=-..+.-||--++.....+-.|+++.+++.|.+++.    + .+=+-=
T Consensus       532 ~~~~if~~~~iap~~~~ll~nLf~a~s~p~~~EneylmKaImRii~i~~~~i~p~~~~~l~~Lteiv~~v~KNPs~P~fn  611 (960)
T KOG1992|consen  532 SNAKIFGAEDIAPFVEILLTNLFKALSLPGKAENEYLMKAIMRIISILQSAIIPHAPELLRQLTEIVEEVSKNPSNPQFN  611 (960)
T ss_pred             ccccccchhhcchHHHHHHHHHHHhccCCcccccHHHHHHHHHHHHhCHHhhhhhhhHHHHHHHHHHHHHhcCCCCchhH
Confidence            1      2334578889999999999776443335566677666666666556888999999999874    1 111222


Q ss_pred             HHHHHHHHHHHHHhHH----hHHHHHHHHHHHHH
Q 046417          237 KAAAEVLGKVAVFDKD----LATEYKRSCLAALE  266 (595)
Q Consensus       237 kaAaEaLgsIA~avge----~f~py~~~~I~~Le  266 (595)
                      --..|.+|.+-...++    .+..+....+.+|+
T Consensus       612 HYLFEsi~~li~~t~~~~~~~vs~~e~aL~p~fq  645 (960)
T KOG1992|consen  612 HYLFESIGLLIRKTCKANPSAVSSLEEALFPVFQ  645 (960)
T ss_pred             HHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHH
Confidence            3457777777665532    34555555554444

>PF10363 DUF2435: Protein of unknown function (DUF2435)

Probab=94.90  E-value=0.15  Score=44.99  Aligned_cols=75  Identities=20%  Similarity=0.209  Sum_probs=61.9

Q ss_pred             CCCCChHHHHHHHHHHHHHHHHccccchhhHHHHHHHHHhhccCCChhHHHHHHHHHHHhhhhhcCCcchhccHHHHHHH
Q 046417           66 DSSSKSPVRKQCVNLLTLLSRSHGDSLSPHLSKMISTVSCRLRDPDSSVRSACVAATTAMSLNITKPSFSVLSKPLIELI  145 (595)
Q Consensus        66 ~ss~kp~vRKaaI~lLG~lAEg~gd~I~PhLpkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~~~~~~~~l~PLi~aL  145 (595)
                      ..++.+++|-+++..|.-+.+... ....+++.|+..+...|+|+|+-|--+|..+|+.|+....+    ..++-|++.-
T Consensus        12 L~dp~~PvRa~gL~~L~~Li~~~~-~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~----~vl~~L~~~y   86 (92)
T PF10363_consen   12 LNDPLPPVRAHGLVLLRKLIESKS-EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPD----EVLPILLDEY   86 (92)
T ss_pred             ccCCCcchHHHHHHHHHHHHHcCC-cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChH----HHHHHHHHHH
Confidence            345678999999999999999888 55667899999999999999999999999999999998742    1344455444

>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex

Probab=94.78  E-value=0.098  Score=56.32  Aligned_cols=102  Identities=17%  Similarity=0.214  Sum_probs=67.8

Q ss_pred             HHHHHHHHHHHhhccC-------chhHHHHHHHHHHHHHHhhcccCcCcHHhHHHHHHHhcc----------CCCHHHHH
Q 046417          175 QLRKLLPRLGKAVRIE-------GFKAKAAVLGVIGSVVRVGGARSKGVLDWLVPCLVEFLC----------CDDWATRK  237 (595)
Q Consensus       175 ~L~~Ll~rL~klL~~~-------~~kaK~alLsAIgSlA~a~g~~~~~yl~~lmp~L~e~L~----------~dDW~~Rk  237 (595)
                      -|+.|+|+|+..+...       +...-..++.++.++..=-.....+|+-.+||.+..|+-          +++|.+|.
T Consensus       207 gl~~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N~~l~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd  286 (343)
T cd08050         207 GLQQLLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDNPNLHLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRD  286 (343)
T ss_pred             CchhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcCCCCchHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHH
Confidence            4555666665555322       222222344555655543344457999999999999972          46899999


Q ss_pred             HHHHHHHHHHHHhHHhHHHHHHHHHHHHHhccCCchHHH
Q 046417          238 AAAEVLGKVAVFDKDLATEYKRSCLAALETRRFDKVKIV  276 (595)
Q Consensus       238 aAaEaLgsIA~avge~f~py~~~~I~~Le~crfDKVK~V  276 (595)
                      -|+..|+.|....+.......+.+++.|-..-+|..+++
T Consensus       287 ~AA~ll~~i~~~f~~~y~~l~~ri~~tl~k~l~d~~~~~  325 (343)
T cd08050         287 YAARLLAQICRKFSTSYNTLQPRITRTLLKALLDPKKPL  325 (343)
T ss_pred             HHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHcCCCCCc
Confidence            999999999998886555555666666666666776655

The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as

>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]

Probab=94.60  E-value=1.3  Score=46.40  Aligned_cols=206  Identities=20%  Similarity=0.270  Sum_probs=111.3

Q ss_pred             cCcHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccchhhHHHHHHHHHhhccCCChhHHHHHHHHHHHhhhhh-c
Q 046417           52 QDSFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPHLSKMISTVSCRLRDPDSSVRSACVAATTAMSLNI-T  130 (595)
Q Consensus        52 ~~~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~PhLpkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l-~  130 (595)
                      .+.+++++.-+.+.  ++.|.+|-++-.+||.+.  .        +.+++++-+-.+||-..||.-|.-|+.++-..- .
T Consensus        66 ~~Av~~l~~vl~de--sq~pmvRhEAaealga~~--~--------~~~~~~l~k~~~dp~~~v~ETc~lAi~rle~~~~~  133 (289)
T KOG0567|consen   66 EDAVPVLVEVLLDE--SQEPMVRHEAAEALGAIG--D--------PESLEILTKYIKDPCKEVRETCELAIKRLEWKDII  133 (289)
T ss_pred             chhhHHHHHHhccc--ccchHHHHHHHHHHHhhc--c--------hhhHHHHHHHhcCCccccchHHHHHHHHHHHhhcc
Confidence            44488888877764  567999999999999876  2        234455566668999999999988887775321 1


Q ss_pred             CCcchhccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhccCchhHHHHHHHHH---HHHHH
Q 046417          131 KPSFSVLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNPEVEQLRKLLPRLGKAVRIEGFKAKAAVLGVI---GSVVR  207 (595)
Q Consensus       131 ~~~~~~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d~~~~~L~~Ll~rL~klL~~~~~kaK~alLsAI---gSlA~  207 (595)
                      +..  .--.|...   .++.+..-.....=|...+   -+.-.+.++.. ..++.+-+...-.+-.++++-+   ++++.
T Consensus       134 ~~~--~~~~p~~S---vdPa~p~~~ssv~~lr~~l---ld~t~~l~~Ry-~amF~LRn~g~EeaI~al~~~l~~~Salfr  204 (289)
T KOG0567|consen  134 DKI--ANSSPYIS---VDPAPPANLSSVHELRAEL---LDETKPLFERY-RAMFYLRNIGTEEAINALIDGLADDSALFR  204 (289)
T ss_pred             ccc--cccCcccc---CCCCCccccccHHHHHHHH---HhcchhHHHHH-hhhhHhhccCcHHHHHHHHHhcccchHHHH
Confidence            110  00011111   1222110000011011111   01001111111 1111111111111111111100   11111


Q ss_pred             -----hhcccCcCcHHhHHHHHHHhccC--CCHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHhccCCchHHHHHHH
Q 046417          208 -----VGGARSKGVLDWLVPCLVEFLCC--DDWATRKAAAEVLGKVAVFDKDLATEYKRSCLAALETRRFDKVKIVRETM  280 (595)
Q Consensus       208 -----a~g~~~~~yl~~lmp~L~e~L~~--dDW~~RkaAaEaLgsIA~avge~f~py~~~~I~~Le~crfDKVK~VRda~  280 (595)
                           +-|+.   --+..+|.|.+.|.+  +.--+|-.|+++||+||.          +.|+++|...--|-...||++.
T Consensus       205 hEvAfVfGQl---~s~~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~----------e~~~~vL~e~~~D~~~vv~esc  271 (289)
T KOG0567|consen  205 HEVAFVFGQL---QSPAAIPSLIKVLLDETEHPMVRHEAAEALGAIAD----------EDCVEVLKEYLGDEERVVRESC  271 (289)
T ss_pred             HHHHHHHhhc---cchhhhHHHHHHHHhhhcchHHHHHHHHHHHhhcC----------HHHHHHHHHHcCCcHHHHHHHH
Confidence                 11111   114568888888864  577899999999999976          3577788888889999999999


Q ss_pred             HHHHHHhHhcC
Q 046417          281 NRSLEMWKEVP  291 (595)
Q Consensus       281 ~~aL~~~K~i~  291 (595)
                      .-||..+---+
T Consensus       272 ~valdm~eyen  282 (289)
T KOG0567|consen  272 EVALDMLEYEN  282 (289)
T ss_pred             HHHHHHHHHhc
Confidence            99998876444

>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]

Probab=94.58  E-value=0.32  Score=59.37  Aligned_cols=122  Identities=20%  Similarity=0.175  Sum_probs=88.7

Q ss_pred             HHHHHHHHHHhhccCchhHHHHHHHHHHHHHHhhcccCcCcHHhHHHHHHHhccCCCHHHHHHHHHHHHHHHHH-hHHhH
Q 046417          176 LRKLLPRLGKAVRIEGFKAKAAVLGVIGSVVRVGGARSKGVLDWLVPCLVEFLCCDDWATRKAAAEVLGKVAVF-DKDLA  254 (595)
Q Consensus       176 L~~Ll~rL~klL~~~~~kaK~alLsAIgSlA~a~g~~~~~yl~~lmp~L~e~L~~dDW~~RkaAaEaLgsIA~a-vge~f  254 (595)
                      +-.+.|+++.++.+++.-+|-++..+|+.++..+-...   +..++..+...+.+.+--.|..+++++-.+... .+-.+
T Consensus       814 ~~~~l~~l~~~~~s~~~a~r~~~ar~i~~~~k~~~~e~---m~~v~~~~~~ll~~~~~~~~r~~a~e~~~~l~~~l~~~l  890 (1549)
T KOG0392|consen  814 LGSLLPRLFFFVRSIHIAVRYAAARCIGTMFKSATRET---MATVINGFLPLLGDLDKFVRRQGADELIELLDAVLMVGL  890 (1549)
T ss_pred             hhhhhhHHHHhcccchHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhhhccchhhHhhhhhHHHHHHHHHHhhcccc
Confidence            55678999999999999899999999998887553221   222333333344444444555555555555444 45688


Q ss_pred             HHHHHHHHHHHHhccCCchHHHHHHHHHHHHHhHhcCCCCCCCCCC
Q 046417          255 TEYKRSCLAALETRRFDKVKIVRETMNRSLEMWKEVPGVCEEVSSP  300 (595)
Q Consensus       255 ~py~~~~I~~Le~crfDKVK~VRda~~~aL~~~K~i~~~~~~~~~p  300 (595)
                      .||...++..|-.|-.|-.-.||+++.++...++-+.+...+.++|
T Consensus       891 ~~~~~Llv~pllr~msd~~d~vR~aat~~fa~lip~~~le~g~~~p  936 (1549)
T KOG0392|consen  891 VPYNPLLVVPLLRRMSDQIDSVREAATKVFAKLIPLLPLEAGIPDP  936 (1549)
T ss_pred             cccceeehhhhhcccccchHHHHHHHHHHHHHHhcccccccCCCCC
Confidence            8899888888999999999999999999999999988886555555

>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.54  E-value=5  Score=47.08  Aligned_cols=121  Identities=14%  Similarity=0.211  Sum_probs=84.6

Q ss_pred             HHHHHHHHHhhhcCCCChHHH--HHHHHHHHHHh-----CCcCc--HHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHc
Q 046417           18 DLKQRVITCLNKLADRDTLPV--ATAELESIART-----LTQDS--FSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSH   88 (595)
Q Consensus        18 ~lk~rvl~~L~KL~DrDT~r~--A~~~LD~lA~~-----L~~~~--lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~   88 (595)
                      .|..+++.-|+.|=.. |..+  -.+++..++..     ++...  +...++-|.....++++..|.=++.+|+-++-.|
T Consensus       252 RLgKKLieplt~li~s-T~AmSLlYECvNTVVa~s~s~g~~d~~asiqLCvqKLr~fiedsDqNLKYlgLlam~KI~ktH  330 (877)
T KOG1059|consen  252 RLGKKLIEPITELMES-TVAMSLLYECVNTVVAVSMSSGMSDHSASIQLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTH  330 (877)
T ss_pred             hhhhhhhhHHHHHHHh-hHHHHHHHHHHHHheeehhccCCCCcHHHHHHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhC
Confidence            4777777777776432 2222  23444444333     43222  7777788888888889999999999999999999


Q ss_pred             cccchhhHHHHHHHHHhhccCCChhHHHHHHHHHHHhhhhhcCCcchhccHHHHHHHh
Q 046417           89 GDSLSPHLSKMISTVSCRLRDPDSSVRSACVAATTAMSLNITKPSFSVLSKPLIELIL  146 (595)
Q Consensus        89 gd~I~PhLpkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~~~~~~~~l~PLi~aLl  146 (595)
                      ++++.-|..    .|++.|.|-|.+||-=+.+-|-.|...   +....+++-|+..+.
T Consensus       331 p~~Vqa~kd----lIlrcL~DkD~SIRlrALdLl~gmVsk---kNl~eIVk~LM~~~~  381 (877)
T KOG1059|consen  331 PKAVQAHKD----LILRCLDDKDESIRLRALDLLYGMVSK---KNLMEIVKTLMKHVE  381 (877)
T ss_pred             HHHHHHhHH----HHHHHhccCCchhHHHHHHHHHHHhhh---hhHHHHHHHHHHHHH
Confidence            999999987    778899999999998887766555431   122236666666663

>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=94.52  E-value=1.5  Score=52.75  Aligned_cols=175  Identities=11%  Similarity=0.074  Sum_probs=110.4

Q ss_pred             HHHHHHHHHHHHccccchhhHHHHHHHHHhhcc------CCC--hhHHHHHHHHHHHhhhhhcCCc-ch----hccHHHH
Q 046417           76 QCVNLLTLLSRSHGDSLSPHLSKMISTVSCRLR------DPD--SSVRSACVAATTAMSLNITKPS-FS----VLSKPLI  142 (595)
Q Consensus        76 aaI~lLG~lAEg~gd~I~PhLpkIL~~IvrrLk------D~d--s~VR~Ac~~aLg~LA~~l~~~~-~~----~~l~PLi  142 (595)
                      ++..++-.++.--|+..   |+++|++++.-|.      .+.  +.--+-|..++|.+++.+.+.. +.    .++.+.+
T Consensus       391 Aa~~~l~~~~~KR~ke~---l~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hV  467 (1010)
T KOG1991|consen  391 AALDFLTTLVSKRGKET---LPKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHV  467 (1010)
T ss_pred             HHHHHHHHHHHhcchhh---hhhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHh
Confidence            67777777777776554   4588888887777      443  3446679999999998887642 11    2555544


Q ss_pred             HHHhhcCChhHHHHHHHHHHHHHhc-CCCchHHHHHHHHHHHHHhhc-cCchhHHHHHHHHHHHHHHhhcccCcCcHHhH
Q 046417          143 ELILVEQDVNSQVGGAMCLAAAIDA-APNPEVEQLRKLLPRLGKAVR-IEGFKAKAAVLGVIGSVVRVGGARSKGVLDWL  220 (595)
Q Consensus       143 ~aLl~d~nk~VQ~~AA~cLaaviE~-a~d~~~~~L~~Ll~rL~klL~-~~~~kaK~alLsAIgSlA~a~g~~~~~yl~~l  220 (595)
                      .-.+..+--+.++.||.-+..+.+. -++  ...+.+++....+.|. ++...+|--+.-|+.+++.....+ ++|+...
T Consensus       468 fP~f~s~~g~Lrarac~vl~~~~~~df~d--~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~-~e~~~~h  544 (1010)
T KOG1991|consen  468 FPEFQSPYGYLRARACWVLSQFSSIDFKD--PNNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQA-DEKVSAH  544 (1010)
T ss_pred             hHhhcCchhHHHHHHHHHHHHHHhccCCC--hHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhh-hhhHhhh
Confidence            4444555567889999988888854 333  3478888888888887 777778877777888888765443 3445444


Q ss_pred             HHHHHHh----ccCCCHHHHHHHHHHHHHHHHHhHHhHHHHHH
Q 046417          221 VPCLVEF----LCCDDWATRKAAAEVLGKVAVFDKDLATEYKR  259 (595)
Q Consensus       221 mp~L~e~----L~~dDW~~RkaAaEaLgsIA~avge~f~py~~  259 (595)
                      +|.+.+-    ...-+-.   ....+|-+|..-.++-+.||+.
T Consensus       545 vp~~mq~lL~L~ne~End---~Lt~vme~iV~~fseElsPfA~  584 (1010)
T KOG1991|consen  545 VPPIMQELLKLSNEVEND---DLTNVMEKIVCKFSEELSPFAV  584 (1010)
T ss_pred             hhHHHHHHHHHHHhcchh---HHHHHHHHHHHHHHHhhchhHH
Confidence            4444333    2211100   1344555555555555566553

>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length

Probab=94.38  E-value=0.42  Score=46.04  Aligned_cols=144  Identities=11%  Similarity=0.117  Sum_probs=90.7

Q ss_pred             HHHHHHHHhhccCCC-hhHHHHHHHHHHHhhhhhcCCcchhccHHHHHHHhhc--CChhHHHHHHHHHHHHH--hcCCCc
Q 046417           97 SKMISTVSCRLRDPD-SSVRSACVAATTAMSLNITKPSFSVLSKPLIELILVE--QDVNSQVGGAMCLAAAI--DAAPNP  171 (595)
Q Consensus        97 pkIL~~IvrrLkD~d-s~VR~Ac~~aLg~LA~~l~~~~~~~~l~PLi~aLl~d--~nk~VQ~~AA~cLaavi--E~a~d~  171 (595)
                      |+++..+++.|+-.. ..+|..+..++|.|+.-  |        |-..-....  .....+.....+-....  .+....
T Consensus         9 P~LL~~L~~iLk~e~s~~iR~E~lr~lGilGAL--D--------P~~~k~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~   78 (160)
T PF11865_consen    9 PELLDILLNILKTEQSQSIRREALRVLGILGAL--D--------PYKHKSIQKSLDSKSSENSNDESTDISLPMMGISPS   78 (160)
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHhhhcccc--C--------cHHHhcccccCCccccccccccchhhHHhhccCCCc
Confidence            678888888877664 67999999999999851  1        111110000  00000111111111111  111112


Q ss_pred             hHHHHH-HHHHHHHHhhccCchh-HHHHHHHHHHHHHHhhcccCcCcHHhHHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Q 046417          172 EVEQLR-KLLPRLGKAVRIEGFK-AKAAVLGVIGSVVRVGGARSKGVLDWLVPCLVEFLCCDDWATRKAAAEVLGKVAVF  249 (595)
Q Consensus       172 ~~~~L~-~Ll~rL~klL~~~~~k-aK~alLsAIgSlA~a~g~~~~~yl~~lmp~L~e~L~~dDW~~RkaAaEaLgsIA~a  249 (595)
                      ..+|.+ -.+..|++.|+++... -+.+++.||-.|+...|....+|++.++|.+...+..-+-..|...+.-|+.|...
T Consensus        79 ~ee~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~lv~i  158 (160)
T PF11865_consen   79 SEEYYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPDSLREFYFQQLADLVSI  158 (160)
T ss_pred             hHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence            234544 4778889999888444 34678899999998777667899999999999999754338888888888887765


Q ss_pred             h
Q 046417          250 D  250 (595)
Q Consensus       250 v  250 (595)
                      +
T Consensus       159 v  159 (160)
T PF11865_consen  159 V  159 (160)
T ss_pred             h
Confidence            4

It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].

>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.30  E-value=3.3  Score=48.98  Aligned_cols=114  Identities=15%  Similarity=0.153  Sum_probs=61.8

Q ss_pred             CCChHHHHHHHHHHHHHHHHccccchhhHHHHHHHHHhhccCCChhHHHHHHHHHHHhhhhhcCCcchhccHHHHHHHhh
Q 046417           68 SSKSPVRKQCVNLLTLLSRSHGDSLSPHLSKMISTVSCRLRDPDSSVRSACVAATTAMSLNITKPSFSVLSKPLIELILV  147 (595)
Q Consensus        68 s~kp~vRKaaI~lLG~lAEg~gd~I~PhLpkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~~~~~~~~l~PLi~aLl~  147 (595)
                      ++++..|-.|++.|.   ..---.|+|   -||-.|-+...|+.+.||..++.|+..+=.--  ......+.-+++-|+.
T Consensus       119 DpN~LiRasALRvlS---sIRvp~IaP---I~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd--~e~k~qL~e~I~~LLa  190 (968)
T KOG1060|consen  119 DPNQLIRASALRVLS---SIRVPMIAP---IMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLD--PEQKDQLEEVIKKLLA  190 (968)
T ss_pred             CCcHHHHHHHHHHHH---hcchhhHHH---HHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCC--hhhHHHHHHHHHHHhc
Confidence            345555555555432   222222233   34445555556666666666555554443211  1111245567777888


Q ss_pred             cCChhHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhcc
Q 046417          148 EQDVNSQVGGAMCLAAAIDAAPNPEVEQLRKLLPRLGKAVRI  189 (595)
Q Consensus       148 d~nk~VQ~~AA~cLaaviE~a~d~~~~~L~~Ll~rL~klL~~  189 (595)
                      |..+-|-.+|++|+..+|-+--+.+.++..+||.-|..+=+|
T Consensus       191 D~splVvgsAv~AF~evCPerldLIHknyrklC~ll~dvdeW  232 (968)
T KOG1060|consen  191 DRSPLVVGSAVMAFEEVCPERLDLIHKNYRKLCRLLPDVDEW  232 (968)
T ss_pred             CCCCcchhHHHHHHHHhchhHHHHhhHHHHHHHhhccchhhh
Confidence            999999988888888777542233345666666544433333

>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=94.29  E-value=0.24  Score=52.48  Aligned_cols=87  Identities=21%  Similarity=0.169  Sum_probs=53.8

Q ss_pred             HHHHHHHHHHHhhccCchh-HH-----HHHHHHHHHHHHhhcccCcCcHHhHHHHHHHhcc----------CCCHHHHHH
Q 046417          175 QLRKLLPRLGKAVRIEGFK-AK-----AAVLGVIGSVVRVGGARSKGVLDWLVPCLVEFLC----------CDDWATRKA  238 (595)
Q Consensus       175 ~L~~Ll~rL~klL~~~~~k-aK-----~alLsAIgSlA~a~g~~~~~yl~~lmp~L~e~L~----------~dDW~~Rka  238 (595)
                      -|+.|+|-|+..+...-.+ .+     ..++..+.|+-.---..-.||+.++||.|..++-          ++.+.+|.-
T Consensus       227 GlhQLvPYFi~f~~eqit~Nl~nl~~LtTv~~m~~sLL~N~~iFvdPY~hqlmPSilTcliakklg~~p~dhe~~alRd~  306 (450)
T COG5095         227 GLHQLVPYFIHFFNEQITKNLKNLEKLTTVVMMYSSLLKNKYIFVDPYLHQLMPSILTCLIAKKLGNVPDDHEHYALRDV  306 (450)
T ss_pred             cHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCceeecHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHH
Confidence            5667777777777543221 11     2222333333321122347999999999998862          234789999


Q ss_pred             HHHHHHHHHHHhHHhHHHHHHHH
Q 046417          239 AAEVLGKVAVFDKDLATEYKRSC  261 (595)
Q Consensus       239 AaEaLgsIA~avge~f~py~~~~  261 (595)
                      |++.|+.+-.-.+..+...++.+
T Consensus       307 AA~ll~yV~~~F~~~YktLkPRv  329 (450)
T COG5095         307 AADLLKYVFSNFSSSYKTLKPRV  329 (450)
T ss_pred             HHHHHHHHHhhhhHhhhhhchHH
Confidence            99999998877776555555553

>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length

Probab=94.27  E-value=4.5  Score=41.19  Aligned_cols=171  Identities=19%  Similarity=0.134  Sum_probs=94.9

Q ss_pred             hhhcCCCChHHHHHHHHHHHHHhCCcCcHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccchhhHHHHHHHHHhh
Q 046417           27 LNKLADRDTLPVATAELESIARTLTQDSFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPHLSKMISTVSCR  106 (595)
Q Consensus        27 L~KL~DrDT~r~A~~~LD~lA~~L~~~~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~PhLpkIL~~Ivrr  106 (595)
                      +.|-.|.......+..|-.++.+=. ...++++..|......++...+--+++++..+-..- +...|+|..++.....+
T Consensus         9 l~~~~~~~~~~~~L~~L~~l~~~~~-~~~~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~-~r~f~~L~~~L~~~~~r   86 (234)
T PF12530_consen    9 LGKISDPELQLPLLEALPSLACHKN-VCVPPVLQTLVSLVEQGSLELRYVALRLLTLLWKAN-DRHFPFLQPLLLLLILR   86 (234)
T ss_pred             hcCCCChHHHHHHHHHHHHHhccCc-cchhHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhC-chHHHHHHHHHHHHHhh
Confidence            4444444455556666666666443 457788887777655555555556677766666554 33448888777764433


Q ss_pred             ----ccCCCh--hHHHHHHHHHHHhhhhhcCCcchhccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCCCchHHHHHHHH
Q 046417          107 ----LRDPDS--SVRSACVAATTAMSLNITKPSFSVLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNPEVEQLRKLL  180 (595)
Q Consensus       107 ----LkD~ds--~VR~Ac~~aLg~LA~~l~~~~~~~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d~~~~~L~~Ll  180 (595)
                          .++.+.  .+.-++..++..++....+ ....++.++...|.++.+..+|.-|.-+|+.++++.-........-|.
T Consensus        87 ~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~-~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc~~~vvd~~s~w~vl~  165 (234)
T PF12530_consen   87 IPSSFSSKDEFWECLISIAASIRDICCSRPD-HGVDLLPLLSGCLNQSCDEVAQALALEALAPLCEAEVVDFYSAWKVLQ  165 (234)
T ss_pred             cccccCCCcchHHHHHHHHHHHHHHHHhChh-hHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhhccHHHHHHHHH
Confidence                222222  2344445555555554432 111255555555525667777777777788888764333334444455


Q ss_pred             HHHHHhhccCchhHHHHHHHHHHHHHH
Q 046417          181 PRLGKAVRIEGFKAKAAVLGVIGSVVR  207 (595)
Q Consensus       181 ~rL~klL~~~~~kaK~alLsAIgSlA~  207 (595)
                      ++|       ...-++.++..+.+++.
T Consensus       166 ~~l-------~~~~rp~v~~~l~~l~~  185 (234)
T PF12530_consen  166 KKL-------SLDYRPLVLKSLCSLFA  185 (234)
T ss_pred             Hhc-------CCccchHHHHHHHHHHH
Confidence            554       22234566665666664

>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]

Probab=94.14  E-value=0.38  Score=55.99  Aligned_cols=64  Identities=25%  Similarity=0.206  Sum_probs=46.5

Q ss_pred             HhHHHHHHHhcc-CCCHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHh
Q 046417          218 DWLVPCLVEFLC-CDDWATRKAAAEVLGKVAVFDKDLATEYKRSCLAALETRRFDKVKIVRETMNRSLEMW  287 (595)
Q Consensus       218 ~~lmp~L~e~L~-~dDW~~RkaAaEaLgsIA~avge~f~py~~~~I~~Le~crfDKVK~VRda~~~aL~~~  287 (595)
                      +..+|..++.|+ +-+--+|-.|+-+||--...-|  .    ..||.+||-.-.|++-.||..+.-|+.++
T Consensus       587 p~~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG--~----~eAi~lLepl~~D~~~fVRQgAlIa~amI  651 (929)
T KOG2062|consen  587 PEQLPSTVSLLSESYNPHVRYGAAMALGIACAGTG--L----KEAINLLEPLTSDPVDFVRQGALIALAMI  651 (929)
T ss_pred             hhhchHHHHHHhhhcChhhhhhHHHHHhhhhcCCC--c----HHHHHHHhhhhcChHHHHHHHHHHHHHHH
Confidence            456777777776 4567888888888775433222  2    35788899999999999999988776554

>KOG2137 consensus Protein kinase [Signal transduction mechanisms]

Probab=94.03  E-value=9.1  Score=44.91  Aligned_cols=130  Identities=16%  Similarity=0.233  Sum_probs=78.9

Q ss_pred             HHHHHHHHHhhccCCChhHHHHHHHHHHHhhhhhcCCcchh-ccHHHHHHH-hhcCChhHHHHHHHHHHHHHhcCCCchH
Q 046417           96 LSKMISTVSCRLRDPDSSVRSACVAATTAMSLNITKPSFSV-LSKPLIELI-LVEQDVNSQVGGAMCLAAAIDAAPNPEV  173 (595)
Q Consensus        96 LpkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~~~~~~~-~l~PLi~aL-l~d~nk~VQ~~AA~cLaaviE~a~d~~~  173 (595)
                      +.+|+|.|.+.++|.+..+++.|+..++.+++.+- .+++. .+-|.+..| +...+..|+..+..||+.+++..+..  
T Consensus       387 ~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD-~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~lD~~--  463 (700)
T KOG2137|consen  387 KEKILPLLYRSLEDSDVQIQELALQILPTVAESID-VPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQRLDKA--  463 (700)
T ss_pred             HHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhcc-HHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHHHHHHH--
Confidence            56899999999999999999999999999998773 23332 344444444 24677889999999999999764321  


Q ss_pred             HHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHH--hhcccCcCcHHhHHHHHHHhccCC
Q 046417          174 EQLRKLLPRLGKAVRIEGFKAKAAVLGVIGSVVR--VGGARSKGVLDWLVPCLVEFLCCD  231 (595)
Q Consensus       174 ~~L~~Ll~rL~klL~~~~~kaK~alLsAIgSlA~--a~g~~~~~yl~~lmp~L~e~L~~d  231 (595)
                      ..++.++|-+... +...-......+.++..++-  .+|.  .-..+.++|.+..+...+
T Consensus       464 ~v~d~~lpi~~~~-~~~dp~iv~~~~~i~~~l~~~~~~g~--ev~~~~VlPlli~ls~~~  520 (700)
T KOG2137|consen  464 AVLDELLPILKCI-KTRDPAIVMGFLRIYEALALIIYSGV--EVMAENVLPLLIPLSVAP  520 (700)
T ss_pred             HhHHHHHHHHHHh-cCCCcHHHHHHHHHHHHHHhhcccce--eeehhhhhhhhhhhhhcc
Confidence            2444444443333 22332222233333322221  1221  122467788887665443

>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length

Probab=93.99  E-value=0.5  Score=45.50  Aligned_cols=143  Identities=13%  Similarity=0.186  Sum_probs=81.3

Q ss_pred             CcHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccchhhHHHHHHHHHhh--ccCCChhHHHHHHHHHHHhhhhhc
Q 046417           53 DSFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPHLSKMISTVSCR--LRDPDSSVRSACVAATTAMSLNIT  130 (595)
Q Consensus        53 ~~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~PhLpkIL~~Ivrr--LkD~ds~VR~Ac~~aLg~LA~~l~  130 (595)
                      +.++.++..|...   ..|..|++++++||.|..     +-||--+.+.--...  -.+.+....+......+.-.  ..
T Consensus        10 ~LL~~L~~iLk~e---~s~~iR~E~lr~lGilGA-----LDP~~~k~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~   79 (160)
T PF11865_consen   10 ELLDILLNILKTE---QSQSIRREALRVLGILGA-----LDPYKHKSIQKSLDSKSSENSNDESTDISLPMMGISP--SS   79 (160)
T ss_pred             HHHHHHHHHHHhC---CCHHHHHHHHHHhhhccc-----cCcHHHhcccccCCccccccccccchhhHHhhccCCC--ch
Confidence            3455555555542   348999999999999954     556665533211110  01112222332222111100  00


Q ss_pred             CCcch--hccHHHHHHHhhcC-ChhHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHH
Q 046417          131 KPSFS--VLSKPLIELILVEQ-DVNSQVGGAMCLAAAIDAAPNPEVEQLRKLLPRLGKAVRIEGFKAKAAVLGVIGSVVR  207 (595)
Q Consensus       131 ~~~~~--~~l~PLi~aLl~d~-nk~VQ~~AA~cLaaviE~a~d~~~~~L~~Ll~rL~klL~~~~~kaK~alLsAIgSlA~  207 (595)
                       +.+.  ..+.-|+..| .|+ -...+..+..|+-.+....+....+||++++|.++..++.-.-..+..++.-++.++.
T Consensus        80 -ee~y~~vvi~~L~~iL-~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~lv~  157 (160)
T PF11865_consen   80 -EEYYPTVVINALMRIL-RDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPDSLREFYFQQLADLVS  157 (160)
T ss_pred             -HHHHHHHHHHHHHHHH-HhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence             1111  2455666666 333 2334456677777777666666689999999999999986544677777766666653

It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].

>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=93.86  E-value=2.3  Score=50.29  Aligned_cols=214  Identities=14%  Similarity=0.096  Sum_probs=134.7

Q ss_pred             HHHHHHHHHHHhCCcCcHHHHHHhhhhcCCCC--------ChHHHH-HHHHHHHHHHHHccccc--hh-hHHHHHHHHHh
Q 046417           38 VATAELESIARTLTQDSFSSFLNCLQTTDSSS--------KSPVRK-QCVNLLTLLSRSHGDSL--SP-HLSKMISTVSC  105 (595)
Q Consensus        38 ~A~~~LD~lA~~L~~~~lp~fL~~L~d~~ss~--------kp~vRK-aaI~lLG~lAEg~gd~I--~P-hLpkIL~~Ivr  105 (595)
                      ||-.....+=..+.+-.+|+++..|....+.+        +...+| +.+.++|..|-...+.+  .. ....++|-+. 
T Consensus       416 CaE~L~~~lF~~ysqllvP~~l~~i~~a~~~~~pt~~~~l~a~L~KDAiYaa~g~~a~~l~~~~dF~~Wl~~~llpEl~-  494 (978)
T KOG1993|consen  416 CAEKLYKDLFDAYSQLLVPPVLDMIYSAQELQSPTVTEDLTALLLKDAIYAAFGLAAYELSNILDFDKWLQEALLPELA-  494 (978)
T ss_pred             hHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHhhCHHhh-
Confidence            44444455555555545788888885543222        234444 55567777666554332  11 1222333332 


Q ss_pred             hccC-CChh-HHHHHHHHHHHhhhhhcCCcchhccHHH-HHH---HhhcC-ChhHHHHHHHHHHHHHhcC---CCchHHH
Q 046417          106 RLRD-PDSS-VRSACVAATTAMSLNITKPSFSVLSKPL-IEL---ILVEQ-DVNSQVGGAMCLAAAIDAA---PNPEVEQ  175 (595)
Q Consensus       106 rLkD-~ds~-VR~Ac~~aLg~LA~~l~~~~~~~~l~PL-i~a---Ll~d~-nk~VQ~~AA~cLaaviE~a---~d~~~~~  175 (595)
                        .| ++.. +|+=.+|-+|+....=+  .  .-++|+ ..+   |+.++ |..|-.+++-.|..++|..   .+.-.||
T Consensus       495 --~~~~~~RiiRRRVa~ilg~Wvsvq~--~--~e~k~l~Y~a~lnLL~d~~D~vV~Ltt~~tlkl~vDD~nF~~dsFlp~  568 (978)
T KOG1993|consen  495 --NDHGNSRIIRRRVAWILGQWVSVQQ--K--LELKPLLYCAFLNLLQDQNDLVVRLTTARTLKLVVDDWNFSEDSFLPY  568 (978)
T ss_pred             --hcccchhHHHHHHHHHHhhhhheec--h--HhHHHHHHHHHHHhcCccccceeehHHHHHHHHhhhhccCChhhhhhh
Confidence              22 2333 46666677666665211  1  122332 222   23455 8889999999999999873   4555788


Q ss_pred             HHHHHHHHHHhhcc-CchhHHHHHHHHHHHHHHhhcccCcCcHHhHHHHHHHhcc--CCCHHHHHHHHHHHHHHHHHhHH
Q 046417          176 LRKLLPRLGKAVRI-EGFKAKAAVLGVIGSVVRVGGARSKGVLDWLVPCLVEFLC--CDDWATRKAAAEVLGKVAVFDKD  252 (595)
Q Consensus       176 L~~Ll~rL~klL~~-~~~kaK~alLsAIgSlA~a~g~~~~~yl~~lmp~L~e~L~--~dDW~~RkaAaEaLgsIA~avge  252 (595)
                      ++.+-..+.++|+. ..+..|..++..++.++.-.+....||...++..|-..|.  .++--+|-+.+-+|-.+..++|.
T Consensus       569 lenlf~~lfkll~~~~e~Dtk~~VL~~ls~lI~r~~e~I~P~~~~ivq~lp~LWe~s~~e~lLr~alL~~L~~lV~alg~  648 (978)
T KOG1993|consen  569 LENLFVLLFKLLKAVEECDTKTSVLNLLSTLIERVSEHIAPYASTIVQYLPLLWEESEEEPLLRCALLATLRNLVNALGA  648 (978)
T ss_pred             HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHhcc
Confidence            88887888888855 3777899999999999985544445898888888888885  34557888888889888888873


Q ss_pred             ---hHHHHH
Q 046417          253 ---LATEYK  258 (595)
Q Consensus       253 ---~f~py~  258 (595)
                         .+-||+
T Consensus       649 qS~~~~~fL  657 (978)
T KOG1993|consen  649 QSFEFYPFL  657 (978)
T ss_pred             CCccchHHH
Confidence               444444

>smart00638 LPD_N Lipoprotein N-terminal Domain

Probab=93.83  E-value=2.6  Score=48.07  Aligned_cols=154  Identities=12%  Similarity=0.056  Sum_probs=93.5

Q ss_pred             hHHHHHHHHHHHHHhC--C-cCcHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHH-Hccccc-------hhhHHHHHHHH
Q 046417           35 TLPVATAELESIARTL--T-QDSFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSR-SHGDSL-------SPHLSKMISTV  103 (595)
Q Consensus        35 T~r~A~~~LD~lA~~L--~-~~~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAE-g~gd~I-------~PhLpkIL~~I  103 (595)
                      +..-|++.|-.+...+  | ++.+..|+..+........+..|..|+++||.++. .|.+.-       ..+++.+...+
T Consensus       372 ~~~ea~~~~~~~~~~~~~Pt~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l  451 (574)
T smart00638      372 TPLEAAQLLAVLPHTARYPTEEILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELL  451 (574)
T ss_pred             CHHHHHHHHHHHHHhhhcCCHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHH
Confidence            4444556566655554  2 33477877777655445567999999999999998 554321       22333333334


Q ss_pred             HhhccCCChhHHHHHHHHHHHhhhhhcCCcchhccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCCCchHHHHHHHHHHH
Q 046417          104 SCRLRDPDSSVRSACVAATTAMSLNITKPSFSVLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNPEVEQLRKLLPRL  183 (595)
Q Consensus       104 vrrLkD~ds~VR~Ac~~aLg~LA~~l~~~~~~~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d~~~~~L~~Ll~rL  183 (595)
                      -...++.+...+..+..|||-++....    +..+.|++.+= ......++..|..||..+.+..+.       .+.+.|
T Consensus       452 ~~~~~~~~~~~~~~~LkaLGN~g~~~~----i~~l~~~l~~~-~~~~~~iR~~Av~Alr~~a~~~p~-------~v~~~l  519 (574)
T smart00638      452 QQAVSKGDEEEIQLYLKALGNAGHPSS----IKVLEPYLEGA-EPLSTFIRLAAILALRNLAKRDPR-------KVQEVL  519 (574)
T ss_pred             HHHHhcCCchheeeHHHhhhccCChhH----HHHHHHhcCCC-CCCCHHHHHHHHHHHHHHHHhCch-------HHHHHH
Confidence            344445677788999999998886331    12455554411 134567889999999988765544       233333


Q ss_pred             HHhhcc--CchhHHHHHHH
Q 046417          184 GKAVRI--EGFKAKAAVLG  200 (595)
Q Consensus       184 ~klL~~--~~~kaK~alLs  200 (595)
                      +.++.+  ....+|.+++.
T Consensus       520 ~~i~~n~~e~~EvRiaA~~  538 (574)
T smart00638      520 LPIYLNRAEPPEVRMAAVL  538 (574)
T ss_pred             HHHHcCCCCChHHHHHHHH
Confidence            444433  36667765543

>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length

Probab=93.76  E-value=12  Score=40.67  Aligned_cols=208  Identities=10%  Similarity=0.067  Sum_probs=131.3

Q ss_pred             HHHHHHhhhhcCCCCC-hHHHHHHHHHHHHHHHHccccchhhHHHHHHHHHhhccCCChhHHHHHHHHHHHhhhhhcCCc
Q 046417           55 FSSFLNCLQTTDSSSK-SPVRKQCVNLLTLLSRSHGDSLSPHLSKMISTVSCRLRDPDSSVRSACVAATTAMSLNITKPS  133 (595)
Q Consensus        55 lp~fL~~L~d~~ss~k-p~vRKaaI~lLG~lAEg~gd~I~PhLpkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~~~~  133 (595)
                      +..++..+....+.-+ ...=-+.+.+|-.+..-+++.+..|...=++.++..+-+....+|..|. ++|..+..+.   
T Consensus       131 ~~~l~~~l~~i~~~~~s~si~~erL~i~~~ll~q~p~~M~~~~~~W~~~l~~~l~~~~k~ir~~a~-~l~~~~~~~l---  206 (372)
T PF12231_consen  131 VERLLAALHNIKNRFPSKSIISERLNIYKRLLSQFPQQMIKHADIWFPILFPDLLSSAKDIRTKAI-SLLLEAKKCL---  206 (372)
T ss_pred             HHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHH-HHHHHHHHHh---
Confidence            5556665555432122 3555677777778888888889888888888999998888888888743 4443333221   


Q ss_pred             chhccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhcc-CchhHHHHHHHHHHHHHHhhccc
Q 046417          134 FSVLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNPEVEQLRKLLPRLGKAVRI-EGFKAKAAVLGVIGSVVRVGGAR  212 (595)
Q Consensus       134 ~~~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d~~~~~L~~Ll~rL~klL~~-~~~kaK~alLsAIgSlA~a~g~~  212 (595)
                                    ..++.+.    -.+....+..-... .+.+.++.+|.+++.. ..+..-..+=.++-.+.......
T Consensus       207 --------------~~~~~~s----~~~~~~~~~~~~~~-~~~~~~~~~L~~mi~~~~~~~~a~~iW~~~i~LL~~~~~~  267 (372)
T PF12231_consen  207 --------------GPNKELS----KSVLEDLQRSLENG-KLIQLYCERLKEMIKSKDEYKLAMQIWSVVILLLGSSRLD  267 (372)
T ss_pred             --------------ChhHHHH----HHHHHHhccccccc-cHHHHHHHHHHHHHhCcCCcchHHHHHHHHHHHhCCchhh
Confidence                          1122111    11122222211111 5788899999999988 44432222223332222211123


Q ss_pred             CcCcHHhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhH--H-----hHHHHHHHHHHHHHhccCCchH-HHHHHHHHHH
Q 046417          213 SKGVLDWLVPCLVEFLCCDDWATRKAAAEVLGKVAVFDK--D-----LATEYKRSCLAALETRRFDKVK-IVRETMNRSL  284 (595)
Q Consensus       213 ~~~yl~~lmp~L~e~L~~dDW~~RkaAaEaLgsIA~avg--e-----~f~py~~~~I~~Le~crfDKVK-~VRda~~~aL  284 (595)
                      .-.++...+.....++.+.|-.+|..|..|-..+..+..  +     .+.-...+++..++.-..+|++ .||+.+...+
T Consensus       268 ~w~~~n~wL~v~e~cFn~~d~~~k~~A~~aW~~liy~~~~~~~~~~k~l~lL~~Pl~~~l~~~~~~~~~~~~~~~ll~~l  347 (372)
T PF12231_consen  268 SWEHLNEWLKVPEKCFNSSDPQVKIQAFKAWRRLIYASNPNELTSPKRLKLLCQPLSSQLRREKSSKTKEEVWWYLLYSL  347 (372)
T ss_pred             ccHhHhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHHhCccccccccHHHHHHHHHHH
Confidence            467889999999999999999999999999999988663  1     2222335556668888888887 8888877655


Q ss_pred             H
Q 046417          285 E  285 (595)
Q Consensus       285 ~  285 (595)
                      -
T Consensus       348 ~  348 (372)
T PF12231_consen  348 C  348 (372)
T ss_pred             h
Confidence            3

Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.

>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain

Probab=93.74  E-value=4.4  Score=42.48  Aligned_cols=196  Identities=13%  Similarity=0.128  Sum_probs=115.5

Q ss_pred             HHHHHHHHHHHccccchh--hHHHHHHHHH-hhccCCChhHHHHHHHHHHHhhhhhcCCcch-hccHHHHHHHhhcCChh
Q 046417           77 CVNLLTLLSRSHGDSLSP--HLSKMISTVS-CRLRDPDSSVRSACVAATTAMSLNITKPSFS-VLSKPLIELILVEQDVN  152 (595)
Q Consensus        77 aI~lLG~lAEg~gd~I~P--hLpkIL~~Iv-rrLkD~ds~VR~Ac~~aLg~LA~~l~~~~~~-~~l~PLi~aLl~d~nk~  152 (595)
                      |+.....+-+.....+.|  .|..|+..++ ..++.+++.||..+..+||.++-.-.  ... .++.-++..+ ...+..
T Consensus         3 cL~i~~~lL~~~~~~~~~~~~l~~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~--~~a~~~l~l~~~~~-~~~~~~   79 (298)
T PF12719_consen    3 CLSITQSLLENVSSSLSPNISLESLLDSLILPAVQSSDPAVRELALKCLGLCCLLDK--ELAKEHLPLFLQAL-QKDDEE   79 (298)
T ss_pred             HHHHHHHHHHhccccCCCcchHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCh--HHHHHHHHHHHHHH-HhCCHH
Confidence            344445555555555655  5568887666 88999999999999999999884321  111 2555566666 555777


Q ss_pred             HHHHHHHHHHHHHhcCCCchH---------HHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHhhcccCcCcHHhHHHH
Q 046417          153 SQVGGAMCLAAAIDAAPNPEV---------EQLRKLLPRLGKAVRIEGFKAKAAVLGVIGSVVRVGGARSKGVLDWLVPC  223 (595)
Q Consensus       153 VQ~~AA~cLaaviE~a~d~~~---------~~L~~Ll~rL~klL~~~~~kaK~alLsAIgSlA~a~g~~~~~yl~~lmp~  223 (595)
                      +++.|.-|+--++-.=+....         ..-..+..-|.++|++.+..++..++..+..+.-.+....   -+.++..
T Consensus        80 v~~~al~~l~Dll~~~g~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~---~~~vL~~  156 (298)
T PF12719_consen   80 VKITALKALFDLLLTHGIDIFDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISD---PPKVLSR  156 (298)
T ss_pred             HHHHHHHHHHHHHHHcCchhccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCc---HHHHHHH
Confidence            887777665444322111111         1234577778888888887888888888888886654432   2456666


Q ss_pred             HHHhccCCCHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHhHhcCCC
Q 046417          224 LVEFLCCDDWATRKAAAEVLGKVAVFDKDLATEYKRSCLAALETRRFDKVKIVRETMNRSLEMWKEVPGV  293 (595)
Q Consensus       224 L~e~L~~dDW~~RkaAaEaLgsIA~avge~f~py~~~~I~~Le~crfDKVK~VRda~~~aL~~~K~i~~~  293 (595)
                      |.-.|.++.-..--       .+-.+++-+|.-|..        ....--..+.++...++..|-..+..
T Consensus       157 Lll~yF~p~t~~~~-------~LrQ~L~~Ffp~y~~--------s~~~~Q~~l~~~f~~~l~~~~~~~~~  211 (298)
T PF12719_consen  157 LLLLYFNPSTEDNQ-------RLRQCLSVFFPVYAS--------SSPENQERLAEAFLPTLRTLSNAPDE  211 (298)
T ss_pred             HHHHHcCcccCCcH-------HHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHHHHHHHHhCccc
Confidence            66666543211100       222223333333331        11111245667777777777766654

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=93.72  E-value=3.2  Score=50.36  Aligned_cols=67  Identities=13%  Similarity=0.050  Sum_probs=41.2

Q ss_pred             CcCcHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccc-hhhHHHHHHHHHhhccCCChhHHHHHHHHHH
Q 046417           51 TQDSFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSL-SPHLSKMISTVSCRLRDPDSSVRSACVAATT  123 (595)
Q Consensus        51 ~~~~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I-~PhLpkIL~~IvrrLkD~ds~VR~Ac~~aLg  123 (595)
                      ||++||+.|+-|...      -+|-.|+.+||-.-.--+=++ ...=--|.||+++.|+.+-..+|..-++--+
T Consensus       470 PPeQLPiVLQVLLSQ------vHRlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQS~a~ELrpiLVFIWA  537 (1387)
T KOG1517|consen  470 PPEQLPIVLQVLLSQ------VHRLRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQSSARELRPILVFIWA  537 (1387)
T ss_pred             ChHhcchHHHHHHHH------HHHHHHHHHHHHHhccchhhhhhhhccchHHHHHHHhccchHhhhhhHHHHHH
Confidence            688899999988753      456666666555444332111 0011146778888888887777777665433

>PF08167 RIX1: rRNA processing/ribosome biogenesis

Probab=93.69  E-value=1.1  Score=43.35  Aligned_cols=134  Identities=11%  Similarity=0.138  Sum_probs=97.0

Q ss_pred             hhhHHHHHHHHHhhccCCChhHHHHHHHHHHHhhhhhcCCcch----hccHHHHHHHhhcCChhHHHHHHHHHHHHHhcC
Q 046417           93 SPHLSKMISTVSCRLRDPDSSVRSACVAATTAMSLNITKPSFS----VLSKPLIELILVEQDVNSQVGGAMCLAAAIDAA  168 (595)
Q Consensus        93 ~PhLpkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~~~~~~----~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a  168 (595)
                      ...+++++.-|...|+++++.-|.+.+.-++.+.++..-+.+.    ..+.-|+..|-....+.+-..|+.+|..+.+..
T Consensus        20 ~~~l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~   99 (165)
T PF08167_consen   20 KSALHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLI   99 (165)
T ss_pred             HHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh
Confidence            5578899999999999999999999988888888776222222    255555555633344567788899999998874


Q ss_pred             C-Cc------hHHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHhhcccCcCcHHhHHHHHHHhc
Q 046417          169 P-NP------EVEQLRKLLPRLGKAVRIEGFKAKAAVLGVIGSVVRVGGARSKGVLDWLVPCLVEFL  228 (595)
Q Consensus       169 ~-d~------~~~~L~~Ll~rL~klL~~~~~kaK~alLsAIgSlA~a~g~~~~~yl~~lmp~L~e~L  228 (595)
                      . .+      ..|.++++++-++++++.  -.+...+++++..+...-...|.||...+-..+.+++
T Consensus       100 ~~~p~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~ptt~rp~~~ki~~~l~~ll  164 (165)
T PF08167_consen  100 RGKPTLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPHHPTTFRPFANKIESALLSLL  164 (165)
T ss_pred             cCCCchHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHCCccccchHHHHHHHHHHHh
Confidence            2 22      246788888888888865  3455678899998887766678888776666555543

>KOG2259 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.66  E-value=1.5  Score=50.90  Aligned_cols=136  Identities=17%  Similarity=0.208  Sum_probs=71.2

Q ss_pred             ccCCChhHHHHHHHHHHHhhhhhcCCcchh-ccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHH
Q 046417          107 LRDPDSSVRSACVAATTAMSLNITKPSFSV-LSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNPEVEQLRKLLPRLGK  185 (595)
Q Consensus       107 LkD~ds~VR~Ac~~aLg~LA~~l~~~~~~~-~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d~~~~~L~~Ll~rL~k  185 (595)
                      |.|.=-.||.|++.+++.||..-  +.+.. -|.=|++.+ +|....|-.-|..+|..+....     .+=++.++.+++
T Consensus       382 lEDEf~EVR~AAV~Sl~~La~ss--P~FA~~aldfLvDMf-NDE~~~VRL~ai~aL~~Is~~l-----~i~eeql~~il~  453 (823)
T KOG2259|consen  382 LEDEFYEVRRAAVASLCSLATSS--PGFAVRALDFLVDMF-NDEIEVVRLKAIFALTMISVHL-----AIREEQLRQILE  453 (823)
T ss_pred             chHHHHHHHHHHHHHHHHHHcCC--CCcHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHHh-----eecHHHHHHHHH
Confidence            33333457788877777777533  22222 334444444 5555667777777777766541     223345666667


Q ss_pred             hhccCchhHHHHHHHHHHHHHHhhcccCcCcHHhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhHHhHH
Q 046417          186 AVRIEGFKAKAAVLGVIGSVVRVGGARSKGVLDWLVPCLVEFLCCDDWATRKAAAEVLGKVAVFDKDLAT  255 (595)
Q Consensus       186 lL~~~~~kaK~alLsAIgSlA~a~g~~~~~yl~~lmp~L~e~L~~dDW~~RkaAaEaLgsIA~avge~f~  255 (595)
                      .|.+.+..+|.++...++.. .+.   ....+.-++..|...|.--- +.|-...-||+.|+.-.+.++.
T Consensus       454 ~L~D~s~dvRe~l~elL~~~-~~~---d~~~i~m~v~~lL~~L~kyP-qDrd~i~~cm~~iGqnH~~lv~  518 (823)
T KOG2259|consen  454 SLEDRSVDVREALRELLKNA-RVS---DLECIDMCVAHLLKNLGKYP-QDRDEILRCMGRIGQNHRRLVL  518 (823)
T ss_pred             HHHhcCHHHHHHHHHHHHhc-CCC---cHHHHHHHHHHHHHHhhhCC-CCcHHHHHHHHHHhccChhhHH
Confidence            77777777777766666532 111   12233333333433332110 1122345567777665554443

>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]

Probab=93.65  E-value=0.61  Score=53.11  Aligned_cols=122  Identities=11%  Similarity=0.189  Sum_probs=87.3

Q ss_pred             HHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccchhhHHHHHHHHHhhccCC-ChhHHHHHHHHHHHhhhhhcCCc
Q 046417           55 FSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPHLSKMISTVSCRLRDP-DSSVRSACVAATTAMSLNITKPS  133 (595)
Q Consensus        55 lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~PhLpkIL~~IvrrLkD~-ds~VR~Ac~~aLg~LA~~l~~~~  133 (595)
                      +..+|..   ..++.+-.+|++++.+||.++=  -|.      ..++-++..|.++ ++.||-+.+.+||..+.--.++ 
T Consensus       553 v~~lLh~---avsD~nDDVrRAAViAlGfvc~--~D~------~~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~-  620 (926)
T COG5116         553 VSTLLHY---AVSDGNDDVRRAAVIALGFVCC--DDR------DLLVGTVELLSESHNFHVRAGVAVALGIACAGTGDK-  620 (926)
T ss_pred             Hhhhhee---ecccCchHHHHHHHHheeeeEe--cCc------chhhHHHHHhhhccchhhhhhhHHHhhhhhcCCccH-
Confidence            5555554   1223456899999999998763  332      3445566666665 6789999999999988754332 


Q ss_pred             chhccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhccCc
Q 046417          134 FSVLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNPEVEQLRKLLPRLGKAVRIEG  191 (595)
Q Consensus       134 ~~~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d~~~~~L~~Ll~rL~klL~~~~  191 (595)
                         ...-++++|+.|.+--|..+|+.|+..+.-...+.+.|-+..|..+|..++.+.+
T Consensus       621 ---~a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~~Lnp~v~~I~k~f~~vI~~Kh  675 (926)
T COG5116         621 ---VATDILEALMYDTNDFVRQSAMIAVGMILMQCNPELNPNVKRIIKKFNRVIVDKH  675 (926)
T ss_pred             ---HHHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCcccChhHHHHHHHHHHHHhhhh
Confidence               3445667776677778889999999888777667677888888888888886554

>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=93.38  E-value=3.8  Score=47.98  Aligned_cols=197  Identities=19%  Similarity=0.165  Sum_probs=115.9

Q ss_pred             HHHHHHHhCC---c--CcHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccchhhHHHHHHHHHhhccCCChhHHH
Q 046417           42 ELESIARTLT---Q--DSFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPHLSKMISTVSCRLRDPDSSVRS  116 (595)
Q Consensus        42 ~LD~lA~~L~---~--~~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~PhLpkIL~~IvrrLkD~ds~VR~  116 (595)
                      -|..+...|+   +  +.+..++-+|.-...+.+-.||..++.+|+.+..--++---.-..+|.-.+..||.|-+|.||.
T Consensus        65 fla~fv~sl~q~d~e~DlV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~VRi  144 (892)
T KOG2025|consen   65 FLARFVESLPQLDKEEDLVAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNVRI  144 (892)
T ss_pred             HHHHHHHhhhccCchhhHHHHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchHHH
Confidence            3444555554   2  2377888888777777778999999999999988333222334568888999999999999999


Q ss_pred             HHHHHHHHhhhhhcCCcchhccHHHHHHHhhcCChhHHHHHHHHHHH-------HHhcCCCchHH----HHHHHHHHHH-
Q 046417          117 ACVAATTAMSLNITKPSFSVLSKPLIELILVEQDVNSQVGGAMCLAA-------AIDAAPNPEVE----QLRKLLPRLG-  184 (595)
Q Consensus       117 Ac~~aLg~LA~~l~~~~~~~~l~PLi~aLl~d~nk~VQ~~AA~cLaa-------viE~a~d~~~~----~L~~Ll~rL~-  184 (595)
                      -|+.+|.+|=..-.++ ......-+...+-.|++.-|..+|-+|+..       ++|-+.|....    ..+.++|++. 
T Consensus       145 qAv~aLsrlQ~d~~de-e~~v~n~l~~liqnDpS~EVRRaaLsnI~vdnsTlp~IveRarDV~~anRrlvY~r~lpkid~  223 (892)
T KOG2025|consen  145 QAVLALSRLQGDPKDE-ECPVVNLLKDLIQNDPSDEVRRAALSNISVDNSTLPCIVERARDVSGANRRLVYERCLPKIDL  223 (892)
T ss_pred             HHHHHHHHHhcCCCCC-cccHHHHHHHHHhcCCcHHHHHHHHHhhccCcccchhHHHHhhhhhHHHHHHHHHHhhhhhhh
Confidence            9999999887532222 112333344444346666677776666432       33443332210    1123444432 


Q ss_pred             ---------H----hhccCchhHHHHHHHHHHHHHHhhcccCcCcHHhHHHHHHHhcc-CCCHHHHHHHHHHHHHH
Q 046417          185 ---------K----AVRIEGFKAKAAVLGVIGSVVRVGGARSKGVLDWLVPCLVEFLC-CDDWATRKAAAEVLGKV  246 (595)
Q Consensus       185 ---------k----lL~~~~~kaK~alLsAIgSlA~a~g~~~~~yl~~lmp~L~e~L~-~dDW~~RkaAaEaLgsI  246 (595)
                               .    -|++..+-+|.|+.++|.+-=       ..+.+.=++-+.+.|. +....++..|+++|-.+
T Consensus       224 r~lsi~krv~LlewgLnDRe~sVk~A~~d~il~~W-------l~~~dgni~ElL~~ldvsnss~vavk~lealf~~  292 (892)
T KOG2025|consen  224 RSLSIDKRVLLLEWGLNDREFSVKGALVDAILSGW-------LRFSDGNILELLERLDVSNSSEVAVKALEALFSG  292 (892)
T ss_pred             hhhhHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHH-------hhhccccHHHHHHHhccccchHHHHHHHHHHHHH
Confidence                     1    223445667777766665310       0111112333444443 34447777888888773

>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=93.10  E-value=3.5  Score=44.64  Aligned_cols=183  Identities=12%  Similarity=0.061  Sum_probs=111.0

Q ss_pred             CCCChHHHHHHHHHHHHHHHHccccc-hhhHHHHHHHHHhhccCCChhHHHHHHHHHHHhhhhhcC-Ccch---hccHHH
Q 046417           67 SSSKSPVRKQCVNLLTLLSRSHGDSL-SPHLSKMISTVSCRLRDPDSSVRSACVAATTAMSLNITK-PSFS---VLSKPL  141 (595)
Q Consensus        67 ss~kp~vRKaaI~lLG~lAEg~gd~I-~PhLpkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~~-~~~~---~~l~PL  141 (595)
                      ++.+...|..++--|..++|-.-.+. .-.+. .+.-++..|+++++.||..++|++|..++.-.+ +..+   -++..|
T Consensus        93 ~s~~le~ke~ald~Le~lve~iDnAndl~~~g-gl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~L  171 (342)
T KOG2160|consen   93 SSVDLEDKEDALDNLEELVEDIDNANDLISLG-GLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKL  171 (342)
T ss_pred             ccCCHHHHHHHHHHHHHHHHhhhhHHhHhhcc-CHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHH
Confidence            44567888888888888888664221 11122 233455599999999999999999999987643 1111   288999


Q ss_pred             HHHHhhcCChhHHHHHHHHHHHHHhcCCCchHHHHHH-HHHHHHHhhcc--CchhHHHHHHHHHHHHHHhhcccCcCcHH
Q 046417          142 IELILVEQDVNSQVGGAMCLAAAIDAAPNPEVEQLRK-LLPRLGKAVRI--EGFKAKAAVLGVIGSVVRVGGARSKGVLD  218 (595)
Q Consensus       142 i~aLl~d~nk~VQ~~AA~cLaaviE~a~d~~~~~L~~-Ll~rL~klL~~--~~~kaK~alLsAIgSlA~a~g~~~~~yl~  218 (595)
                      +..|-.+.+-.+-..|-+|+..+|-+-.+....++.- =..-|..++.+  ...+.|.-++-.|+.+.+.-.....-.-.
T Consensus       172 l~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~  251 (342)
T KOG2160|consen  172 LKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASS  251 (342)
T ss_pred             HHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHH
Confidence            9999655555677888888988887744332222211 02334445555  34444444455666666532111000011


Q ss_pred             hHHHHH-HHhccCCCHHHHHHHHHHHHHHHHHh
Q 046417          219 WLVPCL-VEFLCCDDWATRKAAAEVLGKVAVFD  250 (595)
Q Consensus       219 ~lmp~L-~e~L~~dDW~~RkaAaEaLgsIA~av  250 (595)
                      ..++.. ..+....+|..+..++.++-+.....
T Consensus       252 ~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~~~  284 (342)
T KOG2160|consen  252 LGFQRVLENLISSLDFEVNEAALTALLSLLSEL  284 (342)
T ss_pred             hhhhHHHHHHhhccchhhhHHHHHHHHHHHHHH
Confidence            222333 33345678999999998888876654

>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]

Probab=93.07  E-value=2.2  Score=50.61  Aligned_cols=131  Identities=19%  Similarity=0.220  Sum_probs=74.0

Q ss_pred             HHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccchhhHH-HHHHHHHhhccCCCh-hHHHHHHHHH----------
Q 046417           55 FSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPHLS-KMISTVSCRLRDPDS-SVRSACVAAT----------  122 (595)
Q Consensus        55 lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~PhLp-kIL~~IvrrLkD~ds-~VR~Ac~~aL----------  122 (595)
                      +|.++..|...   .+...--.|+++|..++|.++..+.--.. ..||+++.+|.--+= .|-+.|..||          
T Consensus       213 vp~Lv~LL~~E---~n~DIMl~AcRaltyl~evlP~S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~~A  289 (1051)
T KOG0168|consen  213 VPVLVALLSHE---HNFDIMLLACRALTYLCEVLPRSSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHPKA  289 (1051)
T ss_pred             HHHHHHHHhcc---ccHHHHHHHHHHHHHHHhhccchhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhccHH
Confidence            45555555432   34778889999999999999854422211 234555555543321 1222222221          


Q ss_pred             ----HHhh---------------------hhhcC----Ccc--hhccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCCCc
Q 046417          123 ----TAMS---------------------LNITK----PSF--SVLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNP  171 (595)
Q Consensus       123 ----g~LA---------------------~~l~~----~~~--~~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d~  171 (595)
                          |+|+                     ..+|+    +.+  +.-..||+.-|+..+++.+-+.+|.||..++|+....
T Consensus       290 iL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~sd~f~~v~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~  369 (1051)
T KOG0168|consen  290 ILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSIRSDEFHFVMEALPLLTPLLSYQDKKPIESVCICLTRIADGFQHG  369 (1051)
T ss_pred             HHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccC
Confidence                1111                     11111    111  1234577777778889999999999999999995332


Q ss_pred             h--HHHH--HHHHHHHHHhhc
Q 046417          172 E--VEQL--RKLLPRLGKAVR  188 (595)
Q Consensus       172 ~--~~~L--~~Ll~rL~klL~  188 (595)
                      +  .+.|  ..|+.+...||.
T Consensus       370 ~~kLdql~s~dLi~~~~qLls  390 (1051)
T KOG0168|consen  370 PDKLDQLCSHDLITNIQQLLS  390 (1051)
T ss_pred             hHHHHHHhchhHHHHHHHHHh
Confidence            2  2222  246677777764

>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []

Probab=92.93  E-value=9.4  Score=43.74  Aligned_cols=188  Identities=17%  Similarity=0.193  Sum_probs=102.4

Q ss_pred             HHHHHHHHHhCCcCcHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccchhhHHHHHHHHHhhccCCChhHHHHHH
Q 046417           40 TAELESIARTLTQDSFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPHLSKMISTVSCRLRDPDSSVRSACV  119 (595)
Q Consensus        40 ~~~LD~lA~~L~~~~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~PhLpkIL~~IvrrLkD~ds~VR~Ac~  119 (595)
                      ...|-.+.+.++.+.|..+...+....  .+...|+--+-+|+.+...-.          +.+|...+...+-.--. +.
T Consensus       349 f~~Lv~~lr~l~~~~L~~l~~~~~~~~--~~~~~r~~~lDal~~aGT~~a----------v~~i~~~I~~~~~~~~e-a~  415 (618)
T PF01347_consen  349 FSRLVRLLRTLSYEDLEELYKQLKSKS--KKEQARKIFLDALPQAGTNPA----------VKFIKDLIKSKKLTDDE-AA  415 (618)
T ss_dssp             HHHHHHHHTTS-HHHHHHHHHHHTTS-----HHHHHHHHHHHHHH-SHHH----------HHHHHHHHHTT-S-HHH-HH
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhhc--cHHHHHHHHHHHHHHcCCHHH----------HHHHHHHHHcCCCCHHH-HH
Confidence            667777777787777877777776532  346777777777655433221          12333333333222222 23


Q ss_pred             HHHHHhhhhhcCCcchhccHHHHHHHh---hcCChhHHHHHHHHHHHHHhcC-CC------------c-hHHHHHHHHHH
Q 046417          120 AATTAMSLNITKPSFSVLSKPLIELIL---VEQDVNSQVGGAMCLAAAIDAA-PN------------P-EVEQLRKLLPR  182 (595)
Q Consensus       120 ~aLg~LA~~l~~~~~~~~l~PLi~aLl---~d~nk~VQ~~AA~cLaaviE~a-~d------------~-~~~~L~~Ll~r  182 (595)
                      .++..+......+ -..++.-+++.+.   ...++.+...|.+++..++-.. ..            . ...|++.|...
T Consensus       416 ~~l~~l~~~~~~P-t~e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~  494 (618)
T PF01347_consen  416 QLLASLPFHVRRP-TEELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQE  494 (618)
T ss_dssp             HHHHHHHHT------HHHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHH
T ss_pred             HHHHHHHhhcCCC-CHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHH
Confidence            4455555544222 1123333333331   2456678888888888877551 11            1 12355556566


Q ss_pred             HHHhhccCchhHHHHHHHHHHHHHHhhcccCcCcHHhHHHHHHHhccCC---CHHHHHHHHHHHHHHHHHhH
Q 046417          183 LGKAVRIEGFKAKAAVLGVIGSVVRVGGARSKGVLDWLVPCLVEFLCCD---DWATRKAAAEVLGKVAVFDK  251 (595)
Q Consensus       183 L~klL~~~~~kaK~alLsAIgSlA~a~g~~~~~yl~~lmp~L~e~L~~d---DW~~RkaAaEaLgsIA~avg  251 (595)
                      |..+....+...+...|-|||.+-          .+..++.|..++.+.   .-.+|.+|+.+|..++....
T Consensus       495 l~~~~~~~~~~~~~~~LkaLgN~g----------~~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~  556 (618)
T PF01347_consen  495 LKEAVSRGDEEEKIVYLKALGNLG----------HPESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCP  556 (618)
T ss_dssp             HHHHHHTT-HHHHHHHHHHHHHHT-----------GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-H
T ss_pred             HHHHhhccCHHHHHHHHHHhhccC----------CchhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcCc
Confidence            556666667777788888888543          134667777777655   67889999999997765554

Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.

>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=92.81  E-value=2  Score=50.33  Aligned_cols=207  Identities=17%  Similarity=0.280  Sum_probs=128.4

Q ss_pred             hHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHhCC--cCc---HHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHcccc
Q 046417           17 NDLKQRVITCLNKLADRDTLPVATAELESIARTLT--QDS---FSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDS   91 (595)
Q Consensus        17 ~~lk~rvl~~L~KL~DrDT~r~A~~~LD~lA~~L~--~~~---lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~   91 (595)
                      .+||..+.....     +.++-|+   +.....++  .+.   ++-++.|..    ..+-..+|-+.+-+..-|.++++.
T Consensus        16 ~elks~l~s~~~-----~kr~~a~---kkvIa~Mt~G~DvSslF~dvvk~~~----T~dlelKKlvyLYl~nYa~~~P~~   83 (734)
T KOG1061|consen   16 PELKSQLNSQSK-----EKRKDAV---KKVIAYMTVGKDVSSLFPDVVKCMQ----TRDLELKKLVYLYLMNYAKGKPDL   83 (734)
T ss_pred             hHHHHHhhhhhh-----hhHHHHH---HHHHhcCccCcchHhhhHHHHhhcc----cCCchHHHHHHHHHHHhhccCchH
Confidence            467766632222     3444443   33344333  333   444444443    345788999999999999999865


Q ss_pred             chhhHHHHHHHHHhhccCCChhHHHHHHHHHHHhhhhhcCCcch-hccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCCC
Q 046417           92 LSPHLSKMISTVSCRLRDPDSSVRSACVAATTAMSLNITKPSFS-VLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPN  170 (595)
Q Consensus        92 I~PhLpkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~~~~~~-~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d  170 (595)
                      -.-    .+.++++-..|++|.+|.-|..++|.+--.    ... -++.||...+ .+.+++|+..|+.|.+++-.--++
T Consensus        84 a~~----avnt~~kD~~d~np~iR~lAlrtm~~l~v~----~i~ey~~~Pl~~~l-~d~~~yvRktaa~~vakl~~~~~~  154 (734)
T KOG1061|consen   84 AIL----AVNTFLKDCEDPNPLIRALALRTMGCLRVD----KITEYLCDPLLKCL-KDDDPYVRKTAAVCVAKLFDIDPD  154 (734)
T ss_pred             HHh----hhhhhhccCCCCCHHHHHHHhhceeeEeeh----HHHHHHHHHHHHhc-cCCChhHHHHHHHHHHHhhcCChh
Confidence            332    256889999999999999888776655421    111 2788999999 789999999999999998653222


Q ss_pred             chHHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHhhcc-cCcCcHHhHHHHHHHhcc-CCCHHHHHHHHHHHHHHHH
Q 046417          171 PEVEQLRKLLPRLGKAVRIEGFKAKAAVLGVIGSVVRVGGA-RSKGVLDWLVPCLVEFLC-CDDWATRKAAAEVLGKVAV  248 (595)
Q Consensus       171 ~~~~~L~~Ll~rL~klL~~~~~kaK~alLsAIgSlA~a~g~-~~~~yl~~lmp~L~e~L~-~dDW~~RkaAaEaLgsIA~  248 (595)
                        ...-..+++.|..++.+.+..+-+.++.++..|...-.. ........++..+.+.+. .++|..    +..|..++.
T Consensus       155 --~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~~~l~~~~~~~lL~al~ec~EW~q----i~IL~~l~~  228 (734)
T KOG1061|consen  155 --LVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHPSVNLLELNPQLINKLLEALNECTEWGQ----IFILDCLAE  228 (734)
T ss_pred             --hccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHHHHhhhhhH----HHHHHHHHh
Confidence              112234777777888777777777777777776653321 111111223333333333 367763    666666666


Q ss_pred             Hh
Q 046417          249 FD  250 (595)
Q Consensus       249 av  250 (595)
                      .+
T Consensus       229 y~  230 (734)
T KOG1061|consen  229 YV  230 (734)
T ss_pred             cC
Confidence            55

>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=92.70  E-value=24  Score=44.84  Aligned_cols=110  Identities=15%  Similarity=0.294  Sum_probs=86.4

Q ss_pred             CChhHHHHHHHHHhhhcCCCC--------------------hHHHHHHHHHHHHHhC--CcCcHHHHHHhhhhcCCCCCh
Q 046417           14 PSTNDLKQRVITCLNKLADRD--------------------TLPVATAELESIARTL--TQDSFSSFLNCLQTTDSSSKS   71 (595)
Q Consensus        14 ~~~~~lk~rvl~~L~KL~DrD--------------------T~r~A~~~LD~lA~~L--~~~~lp~fL~~L~d~~ss~kp   71 (595)
                      |+.--||.+.|.||+-+-.-|                    ...+==++||.+.+..  .++.++.+..+|.+...++.-
T Consensus       827 e~~ialRtkAlKclS~ive~Dp~vL~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~~~e~~~qyY~~i~erIlDtgv  906 (1692)
T KOG1020|consen  827 ENAIALRTKALKCLSMIVEADPSVLSRPDVQEAVHGRLNDSSASVREAALDLVGRFVLSIPELIFQYYDQIIERILDTGV  906 (1692)
T ss_pred             CchHHHHHHHHHHHHHHHhcChHhhcCHHHHHHHHHhhccchhHHHHHHHHHHhhhhhccHHHHHHHHHHHHhhcCCCch
Confidence            344568999999999886655                    2222234456665543  267799999999999888778


Q ss_pred             HHHHHHHHHHHHHHHHccccchhhHHHHHHHHHhhccCCChhHHHHHHHHHHHh
Q 046417           72 PVRKQCVNLLTLLSRSHGDSLSPHLSKMISTVSCRLRDPDSSVRSACVAATTAM  125 (595)
Q Consensus        72 ~vRKaaI~lLG~lAEg~gd~I~PhLpkIL~~IvrrLkD~ds~VR~Ac~~aLg~L  125 (595)
                      .|||.+|+.+-.+++..+++  +-++.|..-+++|..|.+..|..-.++++-.+
T Consensus       907 sVRKRvIKIlrdic~e~pdf--~~i~~~cakmlrRv~DEEg~I~kLv~etf~kl  958 (1692)
T KOG1020|consen  907 SVRKRVIKILRDICEETPDF--SKIVDMCAKMLRRVNDEEGNIKKLVRETFLKL  958 (1692)
T ss_pred             hHHHHHHHHHHHHHHhCCCh--hhHHHHHHHHHHHhccchhHHHHHHHHHHHHH
Confidence            99999999999999999986  45678999999999999999999888886554

>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=92.65  E-value=7  Score=45.94  Aligned_cols=124  Identities=14%  Similarity=0.121  Sum_probs=84.4

Q ss_pred             HHHHHHHHHHHHHcc--ccchhhHHHHHHHHHhhccCCChhHHHHHHHHHHHhhhhhcCCcchhccHHHHHHHhh---cC
Q 046417           75 KQCVNLLTLLSRSHG--DSLSPHLSKMISTVSCRLRDPDSSVRSACVAATTAMSLNITKPSFSVLSKPLIELILV---EQ  149 (595)
Q Consensus        75 KaaI~lLG~lAEg~g--d~I~PhLpkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~~~~~~~~l~PLi~aLl~---d~  149 (595)
                      ...++.++.+.+..+  +.--..+..++-+++|.+..++-.||--||--+..+......-+. .++.-|.+.|+.   |.
T Consensus        60 dRIl~fla~fv~sl~q~d~e~DlV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd-~vfn~l~e~l~~Rl~Dr  138 (892)
T KOG2025|consen   60 DRILSFLARFVESLPQLDKEEDLVAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDD-DVFNKLNEKLLIRLKDR  138 (892)
T ss_pred             HHHHHHHHHHHHhhhccCchhhHHHHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCH-HHHHHHHHHHHHHHhcc
Confidence            356666666776665  222446778889999999999999999999999988885432121 245555566542   78


Q ss_pred             ChhHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhh-ccCchhHHHHHHHHHH
Q 046417          150 DVNSQVGGAMCLAAAIDAAPNPEVEQLRKLLPRLGKAV-RIEGFKAKAAVLGVIG  203 (595)
Q Consensus       150 nk~VQ~~AA~cLaaviE~a~d~~~~~L~~Ll~rL~klL-~~~~~kaK~alLsAIg  203 (595)
                      .|+|.+-|..||..+-+.-.++-.+...    -+..++ ++|+-.+|.+++..|.
T Consensus       139 ep~VRiqAv~aLsrlQ~d~~dee~~v~n----~l~~liqnDpS~EVRRaaLsnI~  189 (892)
T KOG2025|consen  139 EPNVRIQAVLALSRLQGDPKDEECPVVN----LLKDLIQNDPSDEVRRAALSNIS  189 (892)
T ss_pred             CchHHHHHHHHHHHHhcCCCCCcccHHH----HHHHHHhcCCcHHHHHHHHHhhc
Confidence            8999999999999998653333222222    223333 5678889988877663

>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=92.44  E-value=2.8  Score=49.55  Aligned_cols=202  Identities=15%  Similarity=0.148  Sum_probs=112.4

Q ss_pred             HHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccchhhHHHHHHHHHhhccCCChhHHHHHHHHHHHhhhhhcCCcc
Q 046417           55 FSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPHLSKMISTVSCRLRDPDSSVRSACVAATTAMSLNITKPSF  134 (595)
Q Consensus        55 lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~PhLpkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~~~~~  134 (595)
                      +-.+..+|..-..+.+-.   ...+||-+++..|+.-+++   .+.|-|.+.|+.+++.||.=|+-++.++-....  ..
T Consensus       105 llLltNslknDL~s~nq~---vVglAL~alg~i~s~Emar---dlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P--~l  176 (866)
T KOG1062|consen  105 LLLLTNSLKNDLNSSNQY---VVGLALCALGNICSPEMAR---DLAPEVERLLQHRDPYIRKKAALCAVRFIRKVP--DL  176 (866)
T ss_pred             HHHHHHHHHhhccCCCee---ehHHHHHHhhccCCHHHhH---HhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCc--hH
Confidence            455566776656555544   4555666666667665555   777888999999999999888777777766542  22


Q ss_pred             hh-ccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCCCch--------------------------------HHHHHHHHH
Q 046417          135 SV-LSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNPE--------------------------------VEQLRKLLP  181 (595)
Q Consensus       135 ~~-~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d~~--------------------------------~~~L~~Ll~  181 (595)
                      .. |+.+....| .+.+..|=.++..-+-.+|+..++.+                                .|+|+--+-
T Consensus       177 ~e~f~~~~~~lL-~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iL  255 (866)
T KOG1062|consen  177 VEHFVIAFRKLL-CEKHHGVLIAGLHLITELCKISPDALSYFRDLVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRIL  255 (866)
T ss_pred             HHHhhHHHHHHH-hhcCCceeeeHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHH
Confidence            22 444444444 55554443332222333343322111                                244444444


Q ss_pred             HHHHhhccCchhHHHHHHHHHHHHHHhhcc--------------------cCcCcHHhHHHHHHHhccCCCHHHHHHHHH
Q 046417          182 RLGKAVRIEGFKAKAAVLGVIGSVVRVGGA--------------------RSKGVLDWLVPCLVEFLCCDDWATRKAAAE  241 (595)
Q Consensus       182 rL~klL~~~~~kaK~alLsAIgSlA~a~g~--------------------~~~~yl~~lmp~L~e~L~~dDW~~RkaAaE  241 (595)
                      ||+++|..++..+...--+.++-+|.-.+.                    ...++..-.+..|..||.+.|-..|-.|+.
T Consensus       256 rlLriLGq~d~daSd~M~DiLaqvatntdsskN~GnAILYE~V~TI~~I~~~~~LrvlainiLgkFL~n~d~NirYvaLn  335 (866)
T KOG1062|consen  256 RLLRILGQNDADASDLMNDILAQVATNTDSSKNAGNAILYECVRTIMDIRSNSGLRVLAINILGKFLLNRDNNIRYVALN  335 (866)
T ss_pred             HHHHHhcCCCccHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhccCCchHHHHHHHHHHHHhcCCccceeeeehh
Confidence            555555444444443333444433321000                    112334445777788888888888888888


Q ss_pred             HHHHHHHHhHHhHHHHHHHHHHHH
Q 046417          242 VLGKVAVFDKDLATEYKRSCLAAL  265 (595)
Q Consensus       242 aLgsIA~avge~f~py~~~~I~~L  265 (595)
                      +|..+..........|..-++..|
T Consensus       336 ~L~r~V~~d~~avqrHr~tIleCL  359 (866)
T KOG1062|consen  336 MLLRVVQQDPTAVQRHRSTILECL  359 (866)
T ss_pred             hHHhhhcCCcHHHHHHHHHHHHHh
Confidence            888876554444444444333333

>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=92.43  E-value=4.6  Score=43.72  Aligned_cols=172  Identities=16%  Similarity=0.211  Sum_probs=110.7

Q ss_pred             HHHHhhhcC-CCChHHHHHHHHHHHHHhCCc-------CcHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHcc---cc
Q 046417           23 VITCLNKLA-DRDTLPVATAELESIARTLTQ-------DSFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHG---DS   91 (595)
Q Consensus        23 vl~~L~KL~-DrDT~r~A~~~LD~lA~~L~~-------~~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~g---d~   91 (595)
                      .+.+++-.+ |-+....|+..|.-++.+++.       ..+.+++.    +..+.++..|+.|...+|.++.--+   +.
T Consensus        86 ~~~~~~~~s~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~----~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~  161 (342)
T KOG2160|consen   86 PIVILNSSSVDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLG----YLENSDAELRELAARVIGTAVQNNPKSQEQ  161 (342)
T ss_pred             hhhccCcccCCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHH----HhcCCcHHHHHHHHHHHHHHHhcCHHHHHH
Confidence            677777664 778899999999999999862       22445554    4455678999999999999998775   33


Q ss_pred             c--hhhHHHHHHHHHhhccCCChhHHHHHHHHHHHhhhhhcCCcchh------ccHHHHHHHhhc--CChhHHHHHHHHH
Q 046417           92 L--SPHLSKMISTVSCRLRDPDSSVRSACVAATTAMSLNITKPSFSV------LSKPLIELILVE--QDVNSQVGGAMCL  161 (595)
Q Consensus        92 I--~PhLpkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~~~~~~~------~l~PLi~aLl~d--~nk~VQ~~AA~cL  161 (595)
                      +  .-.|.+++..+.   +|.+-.||..+.+|++.+-++-.  +.+.      =+.-|..+| ..  .++..|..|+.=+
T Consensus       162 v~E~~~L~~Ll~~ls---~~~~~~~r~kaL~AissLIRn~~--~g~~~fl~~~G~~~L~~vl-~~~~~~~~lkrK~~~Ll  235 (342)
T KOG2160|consen  162 VIELGALSKLLKILS---SDDPNTVRTKALFAISSLIRNNK--PGQDEFLKLNGYQVLRDVL-QSNNTSVKLKRKALFLL  235 (342)
T ss_pred             HHHcccHHHHHHHHc---cCCCchHHHHHHHHHHHHHhcCc--HHHHHHHhcCCHHHHHHHH-HcCCcchHHHHHHHHHH
Confidence            3  224555555444   55666789999999988887652  2211      133466666 44  5667788888878


Q ss_pred             HHHHhcCCCc-h---HHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHH
Q 046417          162 AAAIDAAPNP-E---VEQLRKLLPRLGKAVRIEGFKAKAAVLGVIGSVVR  207 (595)
Q Consensus       162 aaviE~a~d~-~---~~~L~~Ll~rL~klL~~~~~kaK~alLsAIgSlA~  207 (595)
                      +.++++.... .   ...++.++..+..-+   .+.++..++.++-++..
T Consensus       236 ~~Ll~~~~s~~d~~~~~~f~~~~~~l~~~l---~~~~~e~~l~~~l~~l~  282 (342)
T KOG2160|consen  236 SLLLQEDKSDEDIASSLGFQRVLENLISSL---DFEVNEAALTALLSLLS  282 (342)
T ss_pred             HHHHHhhhhhhhHHHHhhhhHHHHHHhhcc---chhhhHHHHHHHHHHHH
Confidence            8888873211 1   112333444433333   44455566666655543

>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion

Probab=92.41  E-value=0.15  Score=38.52  Aligned_cols=40  Identities=30%  Similarity=0.336  Sum_probs=30.6

Q ss_pred             HHHHHHHHccccchhhHHHHHHHHHhhccCCChhHHHHHHHH
Q 046417           80 LLTLLSRSHGDSLSPHLSKMISTVSCRLRDPDSSVRSACVAA  121 (595)
Q Consensus        80 lLG~lAEg~gd~I~PhLpkIL~~IvrrLkD~ds~VR~Ac~~a  121 (595)
                      +|+.+++.-+..+.-  +.|+..|.++|.|+.+.||+|+++.
T Consensus         2 ~l~~iv~~dp~ll~~--~~v~~~i~~rl~D~s~~VR~aav~l   41 (42)
T PF12765_consen    2 ALSSIVEKDPTLLDS--SDVQSAIIRRLSDSSPSVREAAVDL   41 (42)
T ss_pred             hHHHHHhcCccccch--HHHHHHHHHHhcCCChHHHHHHHHH
Confidence            455566665555422  3888999999999999999999875

>KOG1837 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.20  E-value=4.5  Score=50.89  Aligned_cols=217  Identities=15%  Similarity=0.128  Sum_probs=137.3

Q ss_pred             hHHHHHHHHHHHHHhCCcCcHHHHHHhhhhcCC-----CCChHHHHHHHHHHH---HHHHHccccchhhHHHHHHHHHhh
Q 046417           35 TLPVATAELESIARTLTQDSFSSFLNCLQTTDS-----SSKSPVRKQCVNLLT---LLSRSHGDSLSPHLSKMISTVSCR  106 (595)
Q Consensus        35 T~r~A~~~LD~lA~~L~~~~lp~fL~~L~d~~s-----s~kp~vRKaaI~lLG---~lAEg~gd~I~PhLpkIL~~Ivrr  106 (595)
                      ..+++....-.++..|....+-+++..+.+-..     ...-.-+...+..|+   .++|.+---+.||...++--.+-.
T Consensus      1365 ~E~sV~~~~v~~v~klse~~FRplf~~l~~WA~~~~~~~a~~~~~~Rli~fy~f~~~l~esl~si~~pYf~~~l~~~~~~ 1444 (1621)
T KOG1837|consen 1365 LERSVQNKAVAKVLKLSESTFRPLFSPLFDWAEPGLEAKAEQKCLERLISFYHFADYLQESLKSIVTPYFGYLLEPRVIL 1444 (1621)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcccCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence            667777888888888876665555555544332     111233444444443   456666677788877776655544


Q ss_pred             ccCCCh------------hHHHHHHHHHHHhhhhhcCC--------------cchhccHHHHHHHhh---c--CChhHHH
Q 046417          107 LRDPDS------------SVRSACVAATTAMSLNITKP--------------SFSVLSKPLIELILV---E--QDVNSQV  155 (595)
Q Consensus       107 LkD~ds------------~VR~Ac~~aLg~LA~~l~~~--------------~~~~~l~PLi~aLl~---d--~nk~VQ~  155 (595)
                      |+--+.            ..|  -+|.+|.|+-.+...              .......|++..|.+   +  -...|-.
T Consensus      1445 L~k~n~s~~~~~~~~~~~~~r--~~~~~~~Lvl~cl~~~~~~Dt~~~f~t~~r~~~~~~p~v~ql~n~~~e~~~~~~v~~ 1522 (1621)
T KOG1837|consen 1445 LKKINASKHRWFWLLPVNQSR--KPLLLGTLVLNCLKDLFLFDTIESFVTKSRFELLSYPLVSQLVNVLLEFYASDIVSK 1522 (1621)
T ss_pred             HHHhhhhhhhhhhhhcccccc--hhHHHHHHHHHHHHHHHhhhhhHHHHhhhhhhhhhhhhHHHHHHhhccchhhhHHHH
Confidence            433332            234  445566666443211              111366788888754   1  1223444


Q ss_pred             HHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHhhcccCcCcHHhHHHHHHHhccCCCHHH
Q 046417          156 GGAMCLAAAIDAAPNPEVEQLRKLLPRLGKAVRIEGFKAKAAVLGVIGSVVRVGGARSKGVLDWLVPCLVEFLCCDDWAT  235 (595)
Q Consensus       156 ~AA~cLaaviE~a~d~~~~~L~~Ll~rL~klL~~~~~kaK~alLsAIgSlA~a~g~~~~~yl~~lmp~L~e~L~~dDW~~  235 (595)
                      ..+.|++.+--..++.    +.+|..++++...+...++|-.+|-.+--++.-.|+.....++.++|.|.|.++|++-++
T Consensus      1523 ~li~~i~~~~~a~~~d----~~pl~~k~l~~trss~~~~r~~ai~~~~~l~~~lge~~~~lL~q~iPfLaEL~ED~~~~V 1598 (1621)
T KOG1837|consen 1523 LLIAEIASDSVADKDD----LKPLNQKILKKTRSSSRKARYLAIIQVKLLYTKLGENVIVLLPQSIPFLAELMEDEDDEV 1598 (1621)
T ss_pred             HHHHHHHhhccCChhh----hHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhcchhHHhhhhhhHHHHHHHhhhHHHH
Confidence            4444444433223332    677777777888888889998888888877777777777888999999999999998888


Q ss_pred             HHHHHHHHHHHHHHhHHhHHHH
Q 046417          236 RKAAAEVLGKVAVFDKDLATEY  257 (595)
Q Consensus       236 RkaAaEaLgsIA~avge~f~py  257 (595)
                      --.+.+.+..+-..+|+.|..|
T Consensus      1599 e~~~q~li~q~e~~lGE~l~~y 1620 (1621)
T KOG1837|consen 1599 ECLCQKLIRQLEEVLGEPLQSY 1620 (1621)
T ss_pred             HHHHHHHHHHHHHHhchhhhhc
Confidence            7777777777777778876655

>PF10363 DUF2435: Protein of unknown function (DUF2435)

Probab=92.18  E-value=1.4  Score=38.91  Aligned_cols=74  Identities=16%  Similarity=0.166  Sum_probs=60.3

Q ss_pred             HHHHHHhhhcCCCC--hHHHHHHHHHHHHHhCC-cCc-HHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccchh
Q 046417           21 QRVITCLNKLADRD--TLPVATAELESIARTLT-QDS-FSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSP   94 (595)
Q Consensus        21 ~rvl~~L~KL~DrD--T~r~A~~~LD~lA~~L~-~~~-lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~P   94 (595)
                      ...-.++..|.|..  .+.-|+..|..+.+.-. +.. ++.++..+.+...++++++=-.||..|+.+|+.+++.+.|
T Consensus         3 ~~~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~~vl~   80 (92)
T PF10363_consen    3 ETLQEALSDLNDPLPPVRAHGLVLLRKLIESKSEPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPDEVLP   80 (92)
T ss_pred             HHHHHHHHHccCCCcchHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChHHHHH
Confidence            34556778888877  56669999999888765 333 8888888888888899999999999999999999986555

>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms

Probab=92.14  E-value=2.7  Score=48.25  Aligned_cols=92  Identities=15%  Similarity=0.156  Sum_probs=63.4

Q ss_pred             CCCChHHHHHHHHHHHHHhCCcCcHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccchhhHHHHHHHHHhhccCC
Q 046417           31 ADRDTLPVATAELESIARTLTQDSFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPHLSKMISTVSCRLRDP  110 (595)
Q Consensus        31 ~DrDT~r~A~~~LD~lA~~L~~~~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~PhLpkIL~~IvrrLkD~  110 (595)
                      ++.-+-+.|++-+-.+...+| +.-...+.++.|-..+++..+|+.||+.|..+|..-++    |+++|.-.+++.|+-.
T Consensus        34 g~~k~K~Laaq~I~kffk~FP-~l~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~----~v~kvaDvL~QlL~td  108 (556)
T PF05918_consen   34 GSPKEKRLAAQFIPKFFKHFP-DLQEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPE----HVSKVADVLVQLLQTD  108 (556)
T ss_dssp             S-HHHHHHHHHHHHHHHCC-G-GGHHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-----HHHHHHHHHHHTT--
T ss_pred             CCHHHHHHHHHHHHHHHhhCh-hhHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHH----HHhHHHHHHHHHHhcc
Confidence            455688899999999999996 33333444444444456789999999998888887666    7889999999999999


Q ss_pred             ChhHHHHHHHHHHHhhh
Q 046417          111 DSSVRSACVAATTAMSL  127 (595)
Q Consensus       111 ds~VR~Ac~~aLg~LA~  127 (595)
                      |+..+.++-++|-.|-.
T Consensus       109 d~~E~~~v~~sL~~ll~  125 (556)
T PF05918_consen  109 DPVELDAVKNSLMSLLK  125 (556)
T ss_dssp             -HHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHh
Confidence            99888888888766554

Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.

>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=92.12  E-value=4  Score=50.07  Aligned_cols=170  Identities=11%  Similarity=0.100  Sum_probs=101.7

Q ss_pred             HHHHHHhhhhcC----CCCChHHHHHHHHHHHHHHHHccccchhhHHHHHHHHHhhccCCChhHHHHHHHHHHHhhhhhc
Q 046417           55 FSSFLNCLQTTD----SSSKSPVRKQCVNLLTLLSRSHGDSLSPHLSKMISTVSCRLRDPDSSVRSACVAATTAMSLNIT  130 (595)
Q Consensus        55 lp~fL~~L~d~~----ss~kp~vRKaaI~lLG~lAEg~gd~I~PhLpkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~  130 (595)
                      +..|.+.+.+--    ...+|..+.+|..+||-+.=.-.++-..|||-++..+-   +.|.|.||.-|+-++|-|+-...
T Consensus       917 Lg~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~fces~l~llftime---ksp~p~IRsN~VvalgDlav~fp  993 (1251)
T KOG0414|consen  917 LGRFAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEFCESHLPLLFTIME---KSPSPRIRSNLVVALGDLAVRFP  993 (1251)
T ss_pred             HHHHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHh---cCCCceeeecchheccchhhhcc
Confidence            555555554432    34568899999999987755554444445554444332   47999999999999888885441


Q ss_pred             CCcchhccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCCCc--------------hHHHHHHHHHHHHHhhccCchhHHH
Q 046417          131 KPSFSVLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNP--------------EVEQLRKLLPRLGKAVRIEGFKAKA  196 (595)
Q Consensus       131 ~~~~~~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d~--------------~~~~L~~Ll~rL~klL~~~~~kaK~  196 (595)
                        .++.-+.+.+-+.++|.++.|+..|.+-|..+|=+---.              +.+-+..|+..|++-|.+..--.-+
T Consensus       994 --nlie~~T~~Ly~rL~D~~~~vRkta~lvlshLILndmiKVKGql~eMA~cl~D~~~~IsdlAk~FF~Els~k~n~iyn 1071 (1251)
T KOG0414|consen  994 --NLIEPWTEHLYRRLRDESPSVRKTALLVLSHLILNDMIKVKGQLSEMALCLEDPNAEISDLAKSFFKELSSKGNTIYN 1071 (1251)
T ss_pred             --cccchhhHHHHHHhcCccHHHHHHHHHHHHHHHHhhhhHhcccHHHHHHHhcCCcHHHHHHHHHHHHHhhhcccchhh
Confidence              111122233333347889999999999988887542111              1134445666666666555421222


Q ss_pred             HHHHHHHHHHHhhcccCcCcHHhHHHHHHHhccCC
Q 046417          197 AVLGVIGSVVRVGGARSKGVLDWLVPCLVEFLCCD  231 (595)
Q Consensus       197 alLsAIgSlA~a~g~~~~~yl~~lmp~L~e~L~~d  231 (595)
                      .+=+.|+-+..- +..+.+ +..+|..|+.++..+
T Consensus      1072 lLPdil~~Ls~~-~l~~~~-~~~vm~~li~~ikkd 1104 (1251)
T KOG0414|consen 1072 LLPDILSRLSNG-NLEEES-YKTVMEFLIGLIKKD 1104 (1251)
T ss_pred             hchHHHHhhccC-cccchh-hHHHHHHHHHHhccc
Confidence            222444433322 334445 478899999888765

>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]

Probab=91.77  E-value=3  Score=49.42  Aligned_cols=138  Identities=15%  Similarity=0.113  Sum_probs=93.1

Q ss_pred             hHHHHHHHHHHHHHhCCcCcHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccchhhHHHHHHHHHhhccCCChhH
Q 046417           35 TLPVATAELESIARTLTQDSFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPHLSKMISTVSCRLRDPDSSV  114 (595)
Q Consensus        35 T~r~A~~~LD~lA~~L~~~~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~PhLpkIL~~IvrrLkD~ds~V  114 (595)
                      -.|.---.|..+|+.-| +..-..++.+...+.++++..|=.||+.++.+=.      ...++.+++.|.+.+.|+++.|
T Consensus        71 lKrL~ylYl~~yak~~P-~~~lLavNti~kDl~d~N~~iR~~AlR~ls~l~~------~el~~~~~~~ik~~l~d~~ayV  143 (757)
T COG5096          71 LKRLLYLYLERYAKLKP-ELALLAVNTIQKDLQDPNEEIRGFALRTLSLLRV------KELLGNIIDPIKKLLTDPHAYV  143 (757)
T ss_pred             HHHHHHHHHHHHhccCH-HHHHHHHHHHHhhccCCCHHHHHHHHHHHHhcCh------HHHHHHHHHHHHHHccCCcHHH
Confidence            34455555666666554 3333445666666788999999999999888754      2356688899999999999999


Q ss_pred             HHHHHHHHHHhhhh---hcCCcchhccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHH
Q 046417          115 RSACVAATTAMSLN---ITKPSFSVLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNPEVEQLRKLLPRLGK  185 (595)
Q Consensus       115 R~Ac~~aLg~LA~~---l~~~~~~~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d~~~~~L~~Ll~rL~k  185 (595)
                      |..++.+++.+=+.   +..+.  . +.-+...|+.|.++.|-..|..+|..+.+.   ...+|...++.++-.
T Consensus       144 Rk~Aalav~kly~ld~~l~~~~--g-~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e---~a~~~~~~~~~~i~~  211 (757)
T COG5096         144 RKTAALAVAKLYRLDKDLYHEL--G-LIDILKELVADSDPIVIANALASLAEIDPE---LAHGYSLEVILRIPQ  211 (757)
T ss_pred             HHHHHHHHHHHHhcCHhhhhcc--c-HHHHHHHHhhCCCchHHHHHHHHHHHhchh---hhhhHHHHHHHHhhh
Confidence            99999998887632   22111  0 222344455789999888877777776655   234566655554444

>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless

Probab=91.70  E-value=0.25  Score=36.31  Aligned_cols=30  Identities=20%  Similarity=0.232  Sum_probs=26.8

Q ss_pred             HHHHHHHhhccCCChhHHHHHHHHHHHhhh
Q 046417           98 KMISTVSCRLRDPDSSVRSACVAATTAMSL  127 (595)
Q Consensus        98 kIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~  127 (595)
                      ..||.+++.|+++++.|+..|+|+|+-|+.
T Consensus        12 g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~   41 (41)
T PF00514_consen   12 GGIPPLVQLLKSPDPEVQEEAAWALGNLAA   41 (41)
T ss_dssp             THHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred             ccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence            467889999999999999999999998874

Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....

>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 []

Probab=91.55  E-value=1.7  Score=39.16  Aligned_cols=90  Identities=16%  Similarity=0.184  Sum_probs=69.0

Q ss_pred             HHHHHHHHHHHHhhcc----CchhHHHHHHHHHHHHHHhhcccCcCcHHhHHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Q 046417          174 EQLRKLLPRLGKAVRI----EGFKAKAAVLGVIGSVVRVGGARSKGVLDWLVPCLVEFLCCDDWATRKAAAEVLGKVAVF  249 (595)
Q Consensus       174 ~~L~~Ll~rL~klL~~----~~~kaK~alLsAIgSlA~a~g~~~~~yl~~lmp~L~e~L~~dDW~~RkaAaEaLgsIA~a  249 (595)
                      +++--|+.+|-..+.+    ....-|..++.+|+.++..++..-..+.+++|-+|+..+..+  .+|..|++|...+...
T Consensus         7 ~~~Lgil~~f~~~l~d~~~~~~~~ek~~~l~si~~lI~~~~~~i~~~~pQI~a~L~sal~~~--~l~~~al~~W~~fi~~   84 (107)
T PF08064_consen    7 PHILGILTRFSDVLNDLRGKKPIPEKKRALRSIEELIKLGGSHISSARPQIMACLQSALEIP--ELREEALSCWNCFIKT   84 (107)
T ss_pred             HHHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCh--hhHHHHHHHHHHHHHH
Confidence            3444566666666655    566778888999999998776665677788888888888777  7899999999999998


Q ss_pred             hH-HhHHHHHHHHHHHH
Q 046417          250 DK-DLATEYKRSCLAAL  265 (595)
Q Consensus       250 vg-e~f~py~~~~I~~L  265 (595)
                      +. +.+.|+.+.++..+
T Consensus        85 L~~~~l~~ll~~~~~~l  101 (107)
T PF08064_consen   85 LDEEDLGPLLDQIFAIL  101 (107)
T ss_pred             CCHHHHHHHHHHHHHHH
Confidence            86 57777777766554

; GO: 0004674 protein serine/threonine kinase activity

>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport]

Probab=91.52  E-value=3.9  Score=46.58  Aligned_cols=149  Identities=11%  Similarity=0.083  Sum_probs=99.4

Q ss_pred             hHHHHHHHHHHHHHhCCcCc-HHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccchhhHHHHHHHHHhhccCCChh
Q 046417           35 TLPVATAELESIARTLTQDS-FSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPHLSKMISTVSCRLRDPDSS  113 (595)
Q Consensus        35 T~r~A~~~LD~lA~~L~~~~-lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~PhLpkIL~~IvrrLkD~ds~  113 (595)
                      .+.-..+.|.-++--++.+. +..+..-+.+  ..+.|..-++++-.|..++......=.+-||+||..|++.=  ....
T Consensus       368 fR~~v~dvl~Dv~~iigs~e~lk~~~~~l~e--~~~~We~~EAaLF~l~~~~~~~~~~e~~i~pevl~~i~nlp--~Q~~  443 (559)
T KOG2081|consen  368 FRLKVGDVLKDVAFIIGSDECLKQMYIRLKE--NNASWEEVEAALFILRAVAKNVSPEENTIMPEVLKLICNLP--EQAP  443 (559)
T ss_pred             HHHHHHHHHHHHHHHhCcHHHHHHHHHHHcc--CCCchHHHHHHHHHHHHHhccCCccccchHHHHHHHHhCCc--cchh
Confidence            44455666677777777655 7766666665  34569999999999998887766444555666666665542  2233


Q ss_pred             HHHHHHHHHHHhhhhhcCCcchhccHHHHHHHhh-cCChhHHHHHHHHHHHHHhcCCCch---HHHHHHHHHHHHHhhcc
Q 046417          114 VRSACVAATTAMSLNITKPSFSVLSKPLIELILV-EQDVNSQVGGAMCLAAAIDAAPNPE---VEQLRKLLPRLGKAVRI  189 (595)
Q Consensus       114 VR~Ac~~aLg~LA~~l~~~~~~~~l~PLi~aLl~-d~nk~VQ~~AA~cLaaviE~a~d~~---~~~L~~Ll~rL~klL~~  189 (595)
                      ||..++--+|.|++|+...|  .++.|+...++. -+.+..+.+||.|+..++....+..   .+++..+.--+...+-+
T Consensus       444 ~~~ts~ll~g~~~ew~~~~p--~~le~v~~~~~~~~~~~~~as~~a~~~~~i~~~c~~~~~~l~~~~~~l~~~l~~~~~~  521 (559)
T KOG2081|consen  444 LRYTSILLLGEYSEWVEQHP--ELLEPVLRYIRQGLQLKRLASAAALAFHRICSACRVQMTCLIPSLLELIRSLDSTQIN  521 (559)
T ss_pred             HHHHHHHHHHHHHHHHHhCc--HHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcc
Confidence            99999999999999996544  356666666543 2344588899999999888753322   35555555544444433

>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised

Probab=91.27  E-value=17  Score=38.64  Aligned_cols=190  Identities=16%  Similarity=0.134  Sum_probs=97.7

Q ss_pred             HHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccchhhHHHHHHHHHhhccCCChhHHHHHHHHHHHhhhhhcC---
Q 046417           55 FSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPHLSKMISTVSCRLRDPDSSVRSACVAATTAMSLNITK---  131 (595)
Q Consensus        55 lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~PhLpkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~~---  131 (595)
                      +..|++++..-   .+-....+.+.+|+.-....+..+.   ++++.++.+.++|..+.||.+-...+|.+......   
T Consensus        24 ~~~l~~~~~KE---~nE~aL~~~l~al~~~~~~~~~~~~---~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~~~~~~~~   97 (339)
T PF12074_consen   24 VQGLSPLLSKE---SNEAALSALLSALFKHLFFLSSELP---KKVVDAFKKGLKDKKPPVRRAWLLCLGEALWESPNSDS   97 (339)
T ss_pred             HHHHHHHHHhh---cCHHHHHHHHHHHHHHHHHhCcCCC---HHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhhccCchH
Confidence            44555555442   3455666666666665555533333   48889999999999999999999888887651000   


Q ss_pred             Ccch-hccHHHHHHHh---hcCChhHH---HHHHHHHHHHHhcCCCchH--HHHH-----------HHHHHHHHh-hccC
Q 046417          132 PSFS-VLSKPLIELIL---VEQDVNSQ---VGGAMCLAAAIDAAPNPEV--EQLR-----------KLLPRLGKA-VRIE  190 (595)
Q Consensus       132 ~~~~-~~l~PLi~aLl---~d~nk~VQ---~~AA~cLaaviE~a~d~~~--~~L~-----------~Ll~rL~kl-L~~~  190 (595)
                      ..+. .++++|++.+-   ...-+..|   ..+|+|+........+...  ....           -+-+|++.- ...+
T Consensus        98 ~~~~~~~~~~L~~~~~~~~~~p~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~kps~ll~~kvyskl~~~~  177 (339)
T PF12074_consen   98 LKFAEPFLPKLLQSLKEASANPLQSAQNGELVGAYVLLALSSWKLDKIDSKNISFWSLALDPKPSFLLSEKVYSKLASEE  177 (339)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCCccccccHHHHHHHHHhccccchhhhhhhhhhhhhccCCCcchhcCHHHHhccCCHh
Confidence            0122 25555555552   23334444   3445544441111000000  0000           111444444 2222


Q ss_pred             chhHHHHHHHHHHHHHHhhcc-cCcCcHHhHHHHHHHhccCC--CHHHHHHHHHHHHHHHHHhHHh
Q 046417          191 GFKAKAAVLGVIGSVVRVGGA-RSKGVLDWLVPCLVEFLCCD--DWATRKAAAEVLGKVAVFDKDL  253 (595)
Q Consensus       191 ~~kaK~alLsAIgSlA~a~g~-~~~~yl~~lmp~L~e~L~~d--DW~~RkaAaEaLgsIA~avge~  253 (595)
                      ...   -++.++.+++.--.. .........-..++-++.+.  .|.+|+.|+++|..+....+..
T Consensus       178 d~~---w~~~al~~~~~~~~~~~~~~~~~~~~~a~i~ll~s~~~~~~vR~~A~~~l~~l~~~~~~~  240 (339)
T PF12074_consen  178 DLC---WLLRALEALLSDHPSELSSDKSSAWAQAFIYLLCSSNVSWKVRRAALSALKKLYASNPEL  240 (339)
T ss_pred             HHH---HHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhChHH
Confidence            222   233344433321110 00010233445556666666  8999999999999886655443

This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.

>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p []

Probab=91.09  E-value=2.8  Score=43.88  Aligned_cols=144  Identities=13%  Similarity=0.140  Sum_probs=96.0

Q ss_pred             cccchhhHHHHHHHHHhhccCCChhHHHHHHHHHHHhhhhhcCCc---ch------hccHHHHHHHh-------hcCChh
Q 046417           89 GDSLSPHLSKMISTVSCRLRDPDSSVRSACVAATTAMSLNITKPS---FS------VLSKPLIELIL-------VEQDVN  152 (595)
Q Consensus        89 gd~I~PhLpkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~~~~---~~------~~l~PLi~aLl-------~d~nk~  152 (595)
                      ...+..|++-++|.++..+-|.++.++.-.|..|..|...+....   +.      .|..-|...|.       .+....
T Consensus       110 ~~~i~~~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~  189 (282)
T PF10521_consen  110 RPWISQHWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLE  189 (282)
T ss_pred             cchHHHhhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHH
Confidence            377788999999999999999999999999999999998764322   11      12222333332       033344


Q ss_pred             HHHHHHHHHHHHHhcC---CCch-HHHHHHHH-HHHHHhhcc----CchhHHHHHHHHHHHHHHhhcccCcCcHHhHHHH
Q 046417          153 SQVGGAMCLAAAIDAA---PNPE-VEQLRKLL-PRLGKAVRI----EGFKAKAAVLGVIGSVVRVGGARSKGVLDWLVPC  223 (595)
Q Consensus       153 VQ~~AA~cLaaviE~a---~d~~-~~~L~~Ll-~rL~klL~~----~~~kaK~alLsAIgSlA~a~g~~~~~yl~~lmp~  223 (595)
                      +-..|--||-.++...   +... ...+.+++ ..++.-+.+    +...+...+++.+..++..-|.....|+..++|.
T Consensus       190 Ll~~ay~~L~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i~~lGi~~~~hL~rii~~  269 (282)
T PF10521_consen  190 LLQAAYPALLSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPIIDELGISSVKHLQRIIPV  269 (282)
T ss_pred             HHHHHHHHHHHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence            5556666666664431   1111 22333333 324444433    2466778888999998888887778999999999


Q ss_pred             HHHhccCCC
Q 046417          224 LVEFLCCDD  232 (595)
Q Consensus       224 L~e~L~~dD  232 (595)
                      |.+++.+.+
T Consensus       270 l~~~l~npf  278 (282)
T PF10521_consen  270 LSQILENPF  278 (282)
T ss_pred             HHHHhcCCC
Confidence            999988764

>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=91.08  E-value=24  Score=42.25  Aligned_cols=171  Identities=18%  Similarity=0.241  Sum_probs=113.0

Q ss_pred             hHHHHHHHHHhhhc-CCC-C--hHHHHHHHHHHHHHhCC--cCcHHHHHHhhhhcC-----CCCChHHHHHHHHHHHHHH
Q 046417           17 NDLKQRVITCLNKL-ADR-D--TLPVATAELESIARTLT--QDSFSSFLNCLQTTD-----SSSKSPVRKQCVNLLTLLS   85 (595)
Q Consensus        17 ~~lk~rvl~~L~KL-~Dr-D--T~r~A~~~LD~lA~~L~--~~~lp~fL~~L~d~~-----ss~kp~vRKaaI~lLG~lA   85 (595)
                      .|+|..+.-++.+| .|. |  +.=.++++|..++....  ++.+.++++.+....     .-..-..|-..+.+|+.+.
T Consensus       521 ~e~k~l~Y~a~lnLL~d~~D~vV~Ltt~~tlkl~vDD~nF~~dsFlp~lenlf~~lfkll~~~~e~Dtk~~VL~~ls~lI  600 (978)
T KOG1993|consen  521 LELKPLLYCAFLNLLQDQNDLVVRLTTARTLKLVVDDWNFSEDSFLPYLENLFVLLFKLLKAVEECDTKTSVLNLLSTLI  600 (978)
T ss_pred             HhHHHHHHHHHHHhcCccccceeehHHHHHHHHhhhhccCChhhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence            57788887777776 455 3  66668889999988754  666555555443321     0112356778999999999


Q ss_pred             HHccccchhhHHHHHHHHHhhccC--CChhHHHHHHHHHHHhhhhhcCCcch--hccHHHHHHHhhcCC-h-hH--HHHH
Q 046417           86 RSHGDSLSPHLSKMISTVSCRLRD--PDSSVRSACVAATTAMSLNITKPSFS--VLSKPLIELILVEQD-V-NS--QVGG  157 (595)
Q Consensus        86 Eg~gd~I~PhLpkIL~~IvrrLkD--~ds~VR~Ac~~aLg~LA~~l~~~~~~--~~l~PLi~aLl~d~n-k-~V--Q~~A  157 (595)
                      +-.++.|.||..+|++++-..=+.  .++.+|-|-..+|-.|..-+..+++.  .|+-|+++.= .|.+ + +|  -+.+
T Consensus       601 ~r~~e~I~P~~~~ivq~lp~LWe~s~~e~lLr~alL~~L~~lV~alg~qS~~~~~fL~pVIel~-~D~~sP~hv~L~EDg  679 (978)
T KOG1993|consen  601 ERVSEHIAPYASTIVQYLPLLWEESEEEPLLRCALLATLRNLVNALGAQSFEFYPFLYPVIELS-TDPSSPEHVYLLEDG  679 (978)
T ss_pred             HHHHHhhhHHHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHhccCCccchHHHHHHHHHh-cCCCCCceeehhhhH
Confidence            999999999999999988777554  46778999999999999888765433  5888888775 3322 2 21  1222


Q ss_pred             HHHHHHHHhcCCCchHHHHHHHHHHHHHhhcc
Q 046417          158 AMCLAAAIDAAPNPEVEQLRKLLPRLGKAVRI  189 (595)
Q Consensus       158 A~cLaaviE~a~d~~~~~L~~Ll~rL~klL~~  189 (595)
                      -.-=..++++.+. ..|-+-.|+|.+.-.+..
T Consensus       680 meLW~~~L~n~~~-l~p~ll~L~p~l~~~iE~  710 (978)
T KOG1993|consen  680 MELWLTTLMNSQK-LTPELLLLFPHLLYIIEQ  710 (978)
T ss_pred             HHHHHHHHhcccc-cCHHHHHHHHHHHHHHHh
Confidence            2223345555533 224555566666666643

>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=91.06  E-value=2.5  Score=48.08  Aligned_cols=127  Identities=17%  Similarity=0.203  Sum_probs=78.2

Q ss_pred             hccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhccC--------chhHHHHHHHHHHHHHH
Q 046417          136 VLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNPEVEQLRKLLPRLGKAVRIE--------GFKAKAAVLGVIGSVVR  207 (595)
Q Consensus       136 ~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d~~~~~L~~Ll~rL~klL~~~--------~~kaK~alLsAIgSlA~  207 (595)
                      .|++-+++++++ .+...-..|-.+|+      .|   +-|+.|+|+|...+...        ++..=..++..+.|+..
T Consensus       207 lYy~~It~a~~g-~~~~~r~eAL~sL~------TD---sGL~~LlPyFv~fIae~vs~ni~~~nL~lL~~lm~m~rSLl~  276 (576)
T KOG2549|consen  207 LYYKEITEACTG-SDEPLRQEALQSLE------TD---SGLQQLLPYFVTFIAEGVSVNIVQNNLELLIYLMRMVRSLLD  276 (576)
T ss_pred             HHHHHHHHHHhc-CCHHHHHHHHHhhc------cC---ccHHHHHHHHHHHHhhheeeccccccHHHHHHHHHHHHHHhc
Confidence            377778888865 33222222222222      22   35677777777776322        22222233345555554


Q ss_pred             hhcccCcCcHHhHHHHHHHhcc----------CCCHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHhccCCc
Q 046417          208 VGGARSKGVLDWLVPCLVEFLC----------CDDWATRKAAAEVLGKVAVFDKDLATEYKRSCLAALETRRFDK  272 (595)
Q Consensus       208 a~g~~~~~yl~~lmp~L~e~L~----------~dDW~~RkaAaEaLgsIA~avge~f~py~~~~I~~Le~crfDK  272 (595)
                      --.....+|+-.+||.+..|+-          |+.|.+|--|++.|..|....++........+++.|..--.|-
T Consensus       277 Np~i~lepYlh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~L~~Rit~tl~k~l~D~  351 (576)
T KOG2549|consen  277 NPNIFLEPYLHQLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYNNLQPRITRTLSKALLDN  351 (576)
T ss_pred             CCccchhhHHHHHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCC
Confidence            3333457999999999999862          5789999999999999988877655555566666655444454

>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II

Probab=90.73  E-value=14  Score=38.49  Aligned_cols=174  Identities=14%  Similarity=0.135  Sum_probs=102.4

Q ss_pred             hhhcCCCChHHHHHHHHHHHHH--hCCcCcHHHHHHhhhhcC--CCCChHHHHHHHHHHHHHHHHccccchhhHHHHHHH
Q 046417           27 LNKLADRDTLPVATAELESIAR--TLTQDSFSSFLNCLQTTD--SSSKSPVRKQCVNLLTLLSRSHGDSLSPHLSKMIST  102 (595)
Q Consensus        27 L~KL~DrDT~r~A~~~LD~lA~--~L~~~~lp~fL~~L~d~~--ss~kp~vRKaaI~lLG~lAEg~gd~I~PhLpkIL~~  102 (595)
                      ++||.|..+...|+..|..|++  .++.+....++..|.+..  ++.--..|..+..+|..+.+-|.+.+...-...+..
T Consensus        48 ~~rl~D~~~~~~~l~gl~~L~~~~~~~~~~~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~  127 (262)
T PF14500_consen   48 CSRLDDHACVQPALKGLLALVKMKNFSPESAVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYG  127 (262)
T ss_pred             HHHhccHhhHHHHHHHHHHHHhCcCCChhhHHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHH
Confidence            4688888888889999999984  345666777777776543  233358999999999999999988775555556666


Q ss_pred             HHhhccC-CChhHHHHHHHHHHHhhhhhcCCcchhccHHHHHHHhh---------cCChh--HHHHHHHHHHHHHhcCCC
Q 046417          103 VSCRLRD-PDSSVRSACVAATTAMSLNITKPSFSVLSKPLIELILV---------EQDVN--SQVGGAMCLAAAIDAAPN  170 (595)
Q Consensus       103 IvrrLkD-~ds~VR~Ac~~aLg~LA~~l~~~~~~~~l~PLi~aLl~---------d~nk~--VQ~~AA~cLaaviE~a~d  170 (595)
                      ++..+.. -||.---.+..-+..+.....   ...+..-+++.+.-         .++++  -...=..+|...+-+.+ 
T Consensus       128 ~i~~~~gEkDPRnLl~~F~l~~~i~~~~~---~~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~-  203 (262)
T PF14500_consen  128 FIQLIDGEKDPRNLLLSFKLLKVILQEFD---ISEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTP-  203 (262)
T ss_pred             HHHHhccCCCHHHHHHHHHHHHHHHHhcc---cchhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcH-
Confidence            5554432 244432233333333333331   11244555555531         22332  11122222222222111 


Q ss_pred             chHHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHH
Q 046417          171 PEVEQLRKLLPRLGKAVRIEGFKAKAAVLGVIGSVVR  207 (595)
Q Consensus       171 ~~~~~L~~Ll~rL~klL~~~~~kaK~alLsAIgSlA~  207 (595)
                         .+-+..+|-|+.-|.+....+|.-++.++..-+.
T Consensus       204 ---~fa~~~~p~LleKL~s~~~~~K~D~L~tL~~c~~  237 (262)
T PF14500_consen  204 ---LFAPFAFPLLLEKLDSTSPSVKLDSLQTLKACIE  237 (262)
T ss_pred             ---hhHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Confidence               2445677888888888887788777666665554

>KOG1822 consensus Uncharacterized conserved protein [Function unknown]

Probab=90.61  E-value=19  Score=46.55  Aligned_cols=135  Identities=13%  Similarity=0.089  Sum_probs=94.7

Q ss_pred             CcCcH-HHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccchhhHHHHHHHHHhhccCCChhH-HHHHHHHHHHhhhh
Q 046417           51 TQDSF-SSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPHLSKMISTVSCRLRDPDSSV-RSACVAATTAMSLN  128 (595)
Q Consensus        51 ~~~~l-p~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~PhLpkIL~~IvrrLkD~ds~V-R~Ac~~aLg~LA~~  128 (595)
                      .|+.+ ..-+.++.......+|..|=++..++|-++-..++.  |++..+..+++.+|++.+..| |.--.-++|.+=++
T Consensus       869 g~e~v~~~~~~l~~~sl~~~~p~~rc~~~ea~arLaq~v~~~--~f~a~~aq~~fdklas~~d~i~R~ghslalg~lhky  946 (2067)
T KOG1822|consen  869 GPEEVRSSALTLIVNSLINPNPKLRCAAAEALARLAQVVGSA--PFVASLAQNSFDKLASARDPITRTGHSLALGCLHKY  946 (2067)
T ss_pred             CHHHHHHHHHHHHhhhhccCChHHHHHHHHHHHHHHHhcccc--chHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHh
Confidence            34443 344555555567788999999999999999988874  678889999999999986665 66667778888777


Q ss_pred             hcCCcchhccHH---HHHHHhhcCC-hhHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhh
Q 046417          129 ITKPSFSVLSKP---LIELILVEQD-VNSQVGGAMCLAAAIDAAPNPEVEQLRKLLPRLGKAV  187 (595)
Q Consensus       129 l~~~~~~~~l~P---Li~aLl~d~n-k~VQ~~AA~cLaaviE~a~d~~~~~L~~Ll~rL~klL  187 (595)
                      .........+..   ++-+|..|.+ +.||.-+-.||+-++|........|+...+--..++|
T Consensus       947 vgs~~s~qhl~t~v~illal~~Ds~~p~VqtwSL~al~~i~~s~~p~~~~~ve~tlsl~~~lL 1009 (2067)
T KOG1822|consen  947 VGSIGSGQHLNTSVSILLALATDSTSPVVQTWSLHALALILDSSGPMFRVLVEPTLSLCLKLL 1009 (2067)
T ss_pred             ccCCCCchhcccHHHHHHHHhhcCCCchhhhhHHHHHHHHHcCCCceehhhHHHHHHHHHHHc
Confidence            643111112223   5556655654 5999999999999999865544556666555555555

>KOG1243 consensus Protein kinase [General function prediction only]

Probab=90.56  E-value=0.6  Score=54.12  Aligned_cols=176  Identities=16%  Similarity=0.195  Sum_probs=117.1

Q ss_pred             HHHHHHHHHhhhc---CCCChHHHHHHHHHHHHHhCCcCc-HHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHcccc-c
Q 046417           18 DLKQRVITCLNKL---ADRDTLPVATAELESIARTLTQDS-FSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDS-L   92 (595)
Q Consensus        18 ~lk~rvl~~L~KL---~DrDT~r~A~~~LD~lA~~L~~~~-lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~-I   92 (595)
                      +.-++++-+|.||   -||-++-.=++-++.++..|+++. -..+++++..-+.+.++..|+..++.+..+|.-.+.. +
T Consensus       326 eyq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~~L  405 (690)
T KOG1243|consen  326 EYQVRIIPVLLKLFKSPDRQIRLLLLQYIEKYIDHLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKRNL  405 (690)
T ss_pred             ccccchhhhHHHHhcCcchHHHHHHHHhHHHHhhhcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchhhh
Confidence            3667788888887   377788888899999999998554 3355555554444557899999999999999888755 3


Q ss_pred             hhhHHHHHHHHHhhccCCChhHHHHHHHHHHHhhhhhcCCc-chhccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCCCc
Q 046417           93 SPHLSKMISTVSCRLRDPDSSVRSACVAATTAMSLNITKPS-FSVLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNP  171 (595)
Q Consensus        93 ~PhLpkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~~~~-~~~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d~  171 (595)
                      .-   +++.++-+.--|.+..+|.-+-..+|.++.++.-.. ...+..+..-+| .|.-...-.++.++|.+..+.-+  
T Consensus       406 n~---Ellr~~ar~q~d~~~~irtntticlgki~~~l~~~~R~~vL~~aftral-kdpf~paR~a~v~~l~at~~~~~--  479 (690)
T KOG1243|consen  406 NG---ELLRYLARLQPDEHGGIRTNTTICLGKIAPHLAASVRKRVLASAFTRAL-KDPFVPARKAGVLALAATQEYFD--  479 (690)
T ss_pred             cH---HHHHHHHhhCccccCcccccceeeecccccccchhhhccccchhhhhhh-cCCCCCchhhhhHHHhhcccccc--
Confidence            33   666666666668888899888888898888863100 001333333355 34444556677777777666422  


Q ss_pred             hHHHHHHHHHHHHHhhccCchhHHHHHH
Q 046417          172 EVEQLRKLLPRLGKAVRIEGFKAKAAVL  199 (595)
Q Consensus       172 ~~~~L~~Ll~rL~klL~~~~~kaK~alL  199 (595)
                      ....-.+|+|++.-+.-++...++..+.
T Consensus       480 ~~~va~kIlp~l~pl~vd~e~~vr~~a~  507 (690)
T KOG1243|consen  480 QSEVANKILPSLVPLTVDPEKTVRDTAE  507 (690)
T ss_pred             hhhhhhhccccccccccCcccchhhHHH
Confidence            2234567888888777666555554433

>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]

Probab=90.36  E-value=27  Score=42.18  Aligned_cols=241  Identities=10%  Similarity=0.086  Sum_probs=139.3

Q ss_pred             HHHHhhhcCCCChHHHHHHH-HHHHHHhCCcCcHHHHHHh----hhhcC----CCCChHHHHHHHHHHHHHHHHccccch
Q 046417           23 VITCLNKLADRDTLPVATAE-LESIARTLTQDSFSSFLNC----LQTTD----SSSKSPVRKQCVNLLTLLSRSHGDSLS   93 (595)
Q Consensus        23 vl~~L~KL~DrDT~r~A~~~-LD~lA~~L~~~~lp~fL~~----L~d~~----ss~kp~vRKaaI~lLG~lAEg~gd~I~   93 (595)
                      +-+-..+-.|.++.+..... +..++..++.+.+.++...    +.++.    .....-++-.+..+.+..+.+-++..-
T Consensus       365 ~~~fV~dEd~~~~~~~~~rd~~~~v~~~f~~~~i~~i~~a~~~~~~es~at~~~~~~~~wk~qea~l~a~~~~~~~~~~d  444 (1005)
T KOG2274|consen  365 VNQFVADEDDGYTARISVRDLLLEVITTFGNEGINPIQDAAGRHFQESQATYLFNNESWWKIQEALLVAAESVRIDDAND  444 (1005)
T ss_pred             HHHhhccCCCCchhhhhHHHHHHHHHHhccchhhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHhhcccCcchH
Confidence            33344444455577775554 5678889988887777776    33321    111123444455555555555555566


Q ss_pred             hhHHHHHHHHHhhccCCCh-hHHHHHHHHHHHhhhhhcC--CcchhccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCCC
Q 046417           94 PHLSKMISTVSCRLRDPDS-SVRSACVAATTAMSLNITK--PSFSVLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPN  170 (595)
Q Consensus        94 PhLpkIL~~IvrrLkD~ds-~VR~Ac~~aLg~LA~~l~~--~~~~~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d  170 (595)
                      .++..++-++..+|--.+. ..-.-+.|+++.++.-...  +.+..|+.-.+.++.-+.-+.+.++|+.++..++  -..
T Consensus       445 d~l~~l~~~~~~~l~~~e~P~Ll~Ra~~~i~~fs~~~~~~~~~~~~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~--~~~  522 (1005)
T KOG2274|consen  445 DKLIELTIMIDNGLVYQESPFLLLRAFLTISKFSSSTVINPQLLQHFLNATVNALTMDVPPPVKISAVRAFCGYC--KVK  522 (1005)
T ss_pred             HHHHHHHHHHHhhcccccCHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHhhccCCCCchhHHHHHHHHhcc--Cce
Confidence            6677777677777666553 2333677888888876422  2222466667777755666778888888888877  344


Q ss_pred             chHHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHhhcccCcCcH-HhHHHHHHHhcc--CCCHHHHHHHHHHHHHHH
Q 046417          171 PEVEQLRKLLPRLGKAVRIEGFKAKAAVLGVIGSVVRVGGARSKGVL-DWLVPCLVEFLC--CDDWATRKAAAEVLGKVA  247 (595)
Q Consensus       171 ~~~~~L~~Ll~rL~klL~~~~~kaK~alLsAIgSlA~a~g~~~~~yl-~~lmp~L~e~L~--~dDW~~RkaAaEaLgsIA  247 (595)
                      .+.+.++.++.-|..+.-...-.+=.++..++..+...-.+ |..-. ..+.|.+.....  ++|=++-.-+-|++-.+.
T Consensus       523 vl~~~~p~ild~L~qlas~~s~evl~llmE~Ls~vv~~dpe-f~as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~  601 (1005)
T KOG2274|consen  523 VLLSLQPMILDGLLQLASKSSDEVLVLLMEALSSVVKLDPE-FAASMESKICPLTINLFLKYSEDPQVASLAQDLFEELL  601 (1005)
T ss_pred             eccccchHHHHHHHHHcccccHHHHHHHHHHHHHHhccChh-hhhhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHH
Confidence            45678888888888888665666667777888877754322 11111 223444443321  233355555555554443


Q ss_pred             ---HHhHHhHHHHHHHHHHHHH
Q 046417          248 ---VFDKDLATEYKRSCLAALE  266 (595)
Q Consensus       248 ---~avge~f~py~~~~I~~Le  266 (595)
                         ...|....-..+.++.+|.
T Consensus       602 q~~~~~g~m~e~~iPslisil~  623 (1005)
T KOG2274|consen  602 QIAANYGPMQERLIPSLISVLQ  623 (1005)
T ss_pred             HHHHhhcchHHHHHHHHHHHHc
Confidence               3334433334455555554

>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=90.08  E-value=0.67  Score=48.88  Aligned_cols=187  Identities=17%  Similarity=0.207  Sum_probs=96.9

Q ss_pred             hhHHHHHHHHHhhhc-CCCChHHHHHHHHHHHHHhCCcCcHH------------HHHHhhhhcCCCCChHHHHHHHHHHH
Q 046417           16 TNDLKQRVITCLNKL-ADRDTLPVATAELESIARTLTQDSFS------------SFLNCLQTTDSSSKSPVRKQCVNLLT   82 (595)
Q Consensus        16 ~~~lk~rvl~~L~KL-~DrDT~r~A~~~LD~lA~~L~~~~lp------------~fL~~L~d~~ss~kp~vRKaaI~lLG   82 (595)
                      +.....-++..|.++ ++.||.+..+..++-|...-+ ....            ++-+.+. ...++++.....++..|+
T Consensus        53 ~~~~~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~-~~~~~~~~~~~~~~~~~~~~fl~-ll~~~D~~i~~~a~~iLt  130 (312)
T PF03224_consen   53 GDQYASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDP-SRVELFLELAKQDDSDPYSPFLK-LLDRNDSFIQLKAAFILT  130 (312)
T ss_dssp             ---------HHHHHH---HHHHHHHHHHHHHHHH-SS-SSHHHHHHHHH-TTH--HHHHHH-H-S-SSHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCH-HHHHHHHHhcccccchhHHHHHH-HhcCCCHHHHHHHHHHHH
Confidence            445666777888888 888999999999988877654 1111            2222232 344568999999999999


Q ss_pred             HHHHHccccchh----hHHHHHHHHHhhccCCChhHHHHHHHHHHHhhhhh-cCCcch--hccHHHHHHH------hhcC
Q 046417           83 LLSRSHGDSLSP----HLSKMISTVSCRLRDPDSSVRSACVAATTAMSLNI-TKPSFS--VLSKPLIELI------LVEQ  149 (595)
Q Consensus        83 ~lAEg~gd~I~P----hLpkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l-~~~~~~--~~l~PLi~aL------l~d~  149 (595)
                      .++...+.....    .|+.++.++...++.++..++..|+.+|+.|...= .+..+.  ..+.+|+..|      -+..
T Consensus       131 ~Ll~~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~  210 (312)
T PF03224_consen  131 SLLSQGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWKSNGVSPLFDILRKQATNSNSS  210 (312)
T ss_dssp             HHHTSTTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHTHHHHHHHHHHHH---------
T ss_pred             HHHHcCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHhcCcHHHHHHHHHhhcccCCCC
Confidence            999988765544    66777777777666677788899999988887321 001111  2667777766      1122


Q ss_pred             ChhHHHHHHHHHHHHHhcCCCchHHHH--HHHHHHHHHhhccC-chhHHHHHHHHHHHHH
Q 046417          150 DVNSQVGGAMCLAAAIDAAPNPEVEQL--RKLLPRLGKAVRIE-GFKAKAAVLGVIGSVV  206 (595)
Q Consensus       150 nk~VQ~~AA~cLaaviE~a~d~~~~~L--~~Ll~rL~klL~~~-~~kaK~alLsAIgSlA  206 (595)
                      +...|=.+++|+=-+-=+  +...+.+  ..+++.|+.+++.. .=|+--.++.++..++
T Consensus       211 ~~Ql~Y~~ll~lWlLSF~--~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~  268 (312)
T PF03224_consen  211 GIQLQYQALLCLWLLSFE--PEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLL  268 (312)
T ss_dssp             HHHHHHHHHHHHHHHTTS--HHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTT
T ss_pred             chhHHHHHHHHHHHHhcC--HHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHH
Confidence            334455677764332111  0011111  11666666666543 2233334444444444

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]

Probab=89.88  E-value=2.9  Score=47.08  Aligned_cols=194  Identities=11%  Similarity=0.095  Sum_probs=126.5

Q ss_pred             HHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccc-cchhhHHHHHHHHHhhccCCChhHHHHHHHHHHHhhhhhcCC-
Q 046417           55 FSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGD-SLSPHLSKMISTVSCRLRDPDSSVRSACVAATTAMSLNITKP-  132 (595)
Q Consensus        55 lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd-~I~PhLpkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~~~-  132 (595)
                      .+.|+..--|   +.+..+|-++++++++.+=.++- -..-+...-...|++.|-|..-.+|.-+.|++|.+...+.+. 
T Consensus       392 ~~~Fl~GC~d---~~~~lv~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~  468 (728)
T KOG4535|consen  392 CITFLLGCND---SKNRLVKAAASRALGVYVLHPCLRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNM  468 (728)
T ss_pred             hHHHHhcccc---hHHHHHHHHHHhhceeEEeccchhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCC
Confidence            6666665543   45678999999999998877763 335556666677888888888889999999999999888653 


Q ss_pred             cc----h-hccHHHHHHHhh-----c-CChhHHHHHHHHHHHHHhcCCCchHHHHHHHH-HHHHHhhc----cCchhHHH
Q 046417          133 SF----S-VLSKPLIELILV-----E-QDVNSQVGGAMCLAAAIDAAPNPEVEQLRKLL-PRLGKAVR----IEGFKAKA  196 (595)
Q Consensus       133 ~~----~-~~l~PLi~aLl~-----d-~nk~VQ~~AA~cLaaviE~a~d~~~~~L~~Ll-~rL~klL~----~~~~kaK~  196 (595)
                      |.    . .+.--++..++.     + .+-.|...|.-+|....+-........+..++ .-+.+++.    .-.+++|-
T Consensus       469 Ps~~s~~eR~sg~ll~~~~~~A~~~~Ad~dkV~~navraLgnllQvlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~W  548 (728)
T KOG4535|consen  469 PTPDSFQERFSGLLLLKMLRSAIEASADKDKVKSNAVRALGNLLQFLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRW  548 (728)
T ss_pred             CCchHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhHHHHHHHhhhccHHHHHHHHHHhcccceecccccccch
Confidence            21    1 133333333321     2 12347777777777766653222222233322 22233332    23778898


Q ss_pred             HHHHHHHHHHHhh--cccCcCcHHhHHHHHHHhcc-CCCHHHHHHHHHHHHHHHHHhH
Q 046417          197 AVLGVIGSVVRVG--GARSKGVLDWLVPCLVEFLC-CDDWATRKAAAEVLGKVAVFDK  251 (595)
Q Consensus       197 alLsAIgSlA~a~--g~~~~~yl~~lmp~L~e~L~-~dDW~~RkaAaEaLgsIA~avg  251 (595)
                      .+--++|.++.-.  .....++...+.+.|...+. ..++.+|..|+-+|...+.-.+
T Consensus       549 NaCya~gNLfkn~a~~lq~~~wA~~~F~~L~~Lv~~~~NFKVRi~AA~aL~vp~~re~  606 (728)
T KOG4535|consen  549 NACYAMGNLFKNPALPLQTAPWASQAFNALTSLVTSCKNFKVRIRAAAALSVPGKREQ  606 (728)
T ss_pred             HHHHHHHHhhcCccccccCCCchHHHHHHHHHHHHHhccceEeehhhhhhcCCCCccc
Confidence            8888999988532  22235666778888888876 4789999999998887776553

>smart00638 LPD_N Lipoprotein N-terminal Domain

Probab=89.63  E-value=11  Score=43.15  Aligned_cols=20  Identities=10%  Similarity=0.127  Sum_probs=13.2

Q ss_pred             ChhHHHHHHHHHHHhhhhhc
Q 046417          111 DSSVRSACVAATTAMSLNIT  130 (595)
Q Consensus       111 ds~VR~Ac~~aLg~LA~~l~  130 (595)
                      .+.+|..|.-++|.+....|
T Consensus       410 ~~~l~~sa~l~~~~lv~~~c  429 (574)
T smart00638      410 QPYLRESALLAYGSLVRRYC  429 (574)
T ss_pred             cHHHHHHHHHHHHHHHHHHh
Confidence            34567777777777776554

>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]

Probab=89.24  E-value=22  Score=43.43  Aligned_cols=66  Identities=15%  Similarity=0.209  Sum_probs=48.9

Q ss_pred             HHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccchhhHHHHHHHHHhhccCCChhHHHHHHHHHHHhhh
Q 046417           55 FSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPHLSKMISTVSCRLRDPDSSVRSACVAATTAMSL  127 (595)
Q Consensus        55 lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~PhLpkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~  127 (595)
                      +|.|...|.-   ++.-..|...|.++|.+|-.+--.+-    +-+|.|..+|+||++.||..+..-|++|-+
T Consensus       970 ~P~lvkeLe~---~~~~aiRnNiV~am~D~C~~YTam~d----~YiP~I~~~L~Dp~~iVRrqt~ilL~rLLq 1035 (1529)
T KOG0413|consen  970 MPMLVKELEY---NTAHAIRNNIVLAMGDICSSYTAMTD----RYIPMIAASLCDPSVIVRRQTIILLARLLQ 1035 (1529)
T ss_pred             HHHHHHHHHh---hhHHHHhcceeeeehhhHHHHHHHHH----HhhHHHHHHhcCchHHHHHHHHHHHHHHHh
Confidence            6777766654   23468899999999888877744333    445577889999999999988877776653

>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans)

Probab=89.16  E-value=7  Score=41.78  Aligned_cols=193  Identities=17%  Similarity=0.151  Sum_probs=131.9

Q ss_pred             CCCCCCCCCChhHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHhCCcCc----HHHHHHhhhhcCCCCChHHHHHHHHHH
Q 046417            6 RSSSASPPPSTNDLKQRVITCLNKLADRDTLPVATAELESIARTLTQDS----FSSFLNCLQTTDSSSKSPVRKQCVNLL   81 (595)
Q Consensus         6 ~~~~~~~~~~~~~lk~rvl~~L~KL~DrDT~r~A~~~LD~lA~~L~~~~----lp~fL~~L~d~~ss~kp~vRKaaI~lL   81 (595)
                      ..+.++..|....+=+|+-|||+---=.--++-|++.-+.|=+.++++.    ++.+++.|....+.....+|-..+.++
T Consensus        42 ~~~~~~~IP~k~~v~krLaqCL~P~LPsGVH~KaLevY~~IF~~ig~~~L~~dl~i~~~GLfpl~~~asi~Vkp~lL~i~  121 (307)
T PF04118_consen   42 SNNQFPYIPHKLQVSKRLAQCLNPALPSGVHQKALEVYEYIFERIGPDGLAQDLPIYSPGLFPLFSYASIQVKPQLLDIY  121 (307)
T ss_pred             cCCCCceeCcHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHhcCHHHHHhhcHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence            3445566677789999999999874444467778888888888887554    778888888877666678898888888


Q ss_pred             HHHHHHccccchhhHHHHHHHHHhhccCCChhHHHHHHHHHHHhhhhhcCCcchhccHHHHHHHhhcCChhHHHHHHHHH
Q 046417           82 TLLSRSHGDSLSPHLSKMISTVSCRLRDPDSSVRSACVAATTAMSLNITKPSFSVLSKPLIELILVEQDVNSQVGGAMCL  161 (595)
Q Consensus        82 G~lAEg~gd~I~PhLpkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~~~~~~~~l~PLi~aLl~d~nk~VQ~~AA~cL  161 (595)
                      ..-----+..+.|.++-++..++..|.|..+.+-+-+..-+-.+...+.+.   .|..-+..+++.  ++.+-.+|-.-|
T Consensus       122 e~~~lpL~~~L~p~l~~li~slLpGLede~sE~~~~~~~ll~~l~~~v~~~---~F~~~lwl~ii~--sp~~Rl~al~~l  196 (307)
T PF04118_consen  122 EKYYLPLGPALRPCLKGLILSLLPGLEDEGSEFFDRTLKLLDKLKEAVGDK---YFWQCLWLCIIT--SPSRRLGALNYL  196 (307)
T ss_pred             HHHhcCccHHHHHHHHHHHHHhccccccCCchHHHHHHHHHHHHHHhcChh---HHHHHHHHHHhc--CcchhHHHHHHH
Confidence            776666678889999999999999999999999888888888888776432   477777888864  333444443333


Q ss_pred             HHHHhcCC-------CchHH-HH----HHHHHHHHHhhccCchhHHHHHHHHHH
Q 046417          162 AAAIDAAP-------NPEVE-QL----RKLLPRLGKAVRIEGFKAKAAVLGVIG  203 (595)
Q Consensus       162 aaviE~a~-------d~~~~-~L----~~Ll~rL~klL~~~~~kaK~alLsAIg  203 (595)
                      .+-.....       ..... .+    .-++..|+..|++++.-++-..+|.+-
T Consensus       197 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~Llv~al~~~L~D~~iLVqR~~LDlLl  250 (307)
T PF04118_consen  197 LRRLPKFQNDELSLSSEEQEYCLGPDPGLLVRALCACLEDENILVQRGFLDLLL  250 (307)
T ss_pred             HHhCCcccccccccchHHHHHhcCCCccHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence            33222111       00001 11    135566666666666666655555554

DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].

>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain

Probab=89.02  E-value=4.8  Score=36.08  Aligned_cols=75  Identities=16%  Similarity=0.020  Sum_probs=56.8

Q ss_pred             CcHHhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHhccC--------CchHHHHHHHHHHHHH
Q 046417          215 GVLDWLVPCLVEFLCCDDWATRKAAAEVLGKVAVFDKDLATEYKRSCLAALETRRF--------DKVKIVRETMNRSLEM  286 (595)
Q Consensus       215 ~yl~~lmp~L~e~L~~dDW~~RkaAaEaLgsIA~avge~f~py~~~~I~~Le~crf--------DKVK~VRda~~~aL~~  286 (595)
                      .....+|..|...|.+.+|..-.-|+..|=++...+|+.|..+...-.-..+-++|        |.=..||+-+.+.+++
T Consensus        33 ~~~~~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~~  112 (115)
T cd00197          33 VGPKEAVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKFDKSKLLGDDVSTNVREKAIELVQL  112 (115)
T ss_pred             ccHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHhhccccccCCCChHHHHHHHHHHHH
Confidence            44567888899999999999999999999999999998776665332222232332        2236899999999999


Q ss_pred             hHh
Q 046417          287 WKE  289 (595)
Q Consensus       287 ~K~  289 (595)
                      |.+
T Consensus       113 w~~  115 (115)
T cd00197         113 WAS  115 (115)
T ss_pred             HhC
Confidence            974

The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra

>KOG4524 consensus Uncharacterized conserved protein [Function unknown]

Probab=88.89  E-value=52  Score=40.17  Aligned_cols=274  Identities=15%  Similarity=0.116  Sum_probs=145.0

Q ss_pred             HHHHHHHHHhhhcCCCCh--HHHHHHHHHHHHHhCCcCcHHHHHHhhhhcCCC-----CC-hHHHHHHHHHHHHHHHHcc
Q 046417           18 DLKQRVITCLNKLADRDT--LPVATAELESIARTLTQDSFSSFLNCLQTTDSS-----SK-SPVRKQCVNLLTLLSRSHG   89 (595)
Q Consensus        18 ~lk~rvl~~L~KL~DrDT--~r~A~~~LD~lA~~L~~~~lp~fL~~L~d~~ss-----~k-p~vRKaaI~lLG~lAEg~g   89 (595)
                      +|.--+...|.|+++.-+  .++|..++-.|+..+.-..++.++.+=.|+.-.     .+ ...-.+....+.++..--.
T Consensus       586 ~L~~~ly~vl~k~a~~s~~is~vA~sc~~~I~~a~~y~s~~~lI~en~DYlv~sla~~L~~~~~s~~~~~Vl~vVl~~s~  665 (1014)
T KOG4524|consen  586 ELMDYLYPVLEKLASPSEAISQVAQSCALRIADALNYGSPPHLIRENVDYLVNSLALRLNTSGMSPRVPDVLMVVLQYSD  665 (1014)
T ss_pred             HHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHcCCCChHHHHHhhhHHHHHHHHHHhccCCCCchhHHHHHHHhhcCC
Confidence            444556677889998775  456888899999998876677766654444210     00 1111244445555555555


Q ss_pred             ccchhhHHHHHHHHHhhccCCC--h-----hHHHHHHHHH----------HHhhhhhcCCcchh--ccHHHHHHHhhcCC
Q 046417           90 DSLSPHLSKMISTVSCRLRDPD--S-----SVRSACVAAT----------TAMSLNITKPSFSV--LSKPLIELILVEQD  150 (595)
Q Consensus        90 d~I~PhLpkIL~~IvrrLkD~d--s-----~VR~Ac~~aL----------g~LA~~l~~~~~~~--~l~PLi~aLl~d~n  150 (595)
                      -...|||..++..|...|.--.  +     .+-.|-...+          |.+++|...+....  .++--+..+.+..+
T Consensus       666 ~~~i~~l~dvvq~i~~~lD~yH~~~~~~~~~ll~s~ik~~~~~~~~~~il~~~~d~~~~~~~k~l~e~p~~~~e~~n~~~  745 (1014)
T KOG4524|consen  666 YGTIPNLKDVVQTIFKLLDYYHGYSCLQFFQLLHSIIKEMKKKYINDEILGHIADQHISQSTKVLNELPTQVKELINDEN  745 (1014)
T ss_pred             CCchhhHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHhhcchhhHHHhhhhHH
Confidence            6667777777777776653321  1     1111111111          12222221100000  01111111110000


Q ss_pred             hhHHHHHHHHHHHHH--------hc--------------CCC--------chHHHHHHHHHHHHHhhccCchhHHHHHHH
Q 046417          151 VNSQVGGAMCLAAAI--------DA--------------APN--------PEVEQLRKLLPRLGKAVRIEGFKAKAAVLG  200 (595)
Q Consensus       151 k~VQ~~AA~cLaavi--------E~--------------a~d--------~~~~~L~~Ll~rL~klL~~~~~kaK~alLs  200 (595)
                      ...+..-..=.....        ++              ...        +-..++.+|+.|-.++|.++....|-.+|+
T Consensus       746 d~~~~l~~~~~e~~~~~~~~~~~dnee~~e~~~e~edens~~~d~ep~~~~qv~iv~kIl~r~~~~LS~e~l~irvkaLd  825 (1014)
T KOG4524|consen  746 DLKDDLEPSNFEKDFASKLREPDDNEEPEEREEEVEDENSEYTDTEPILPDQVKIVLKILGRGIHLLSHESLRIRVKALD  825 (1014)
T ss_pred             HHHHhhhhHHHHHHhhhhccCCCcccCcCCCCCCccccccCCCCCCCCCChHHHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence            000111011011111        00              000        113478899999999999999999988899


Q ss_pred             HHHHHHHhhc---ccCcCcHHhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhHHhHHH-HHHHHHHHHHhccCC-----
Q 046417          201 VIGSVVRVGG---ARSKGVLDWLVPCLVEFLCCDDWATRKAAAEVLGKVAVFDKDLATE-YKRSCLAALETRRFD-----  271 (595)
Q Consensus       201 AIgSlA~a~g---~~~~~yl~~lmp~L~e~L~~dDW~~RkaAaEaLgsIA~avge~f~p-y~~~~I~~Le~crfD-----  271 (595)
                      ++......-.   ..+.|.+...-|.+++++..+|--+-..|+.||..+....|+++.. +...+++.|+..--|     
T Consensus       826 vl~~gl~~La~~~n~LlPlvhq~W~~vie~~~~k~~L~v~~a~~~i~~m~~~sgDFv~sR~l~dvlP~l~~~~~~~~~~~  905 (1014)
T KOG4524|consen  826 VLSLGLPLLATYHNLLLPLVHQTWPSVIECLLCKDPLIVQRAFSCIEQMGKYSGDFVASRFLEDVLPWLKHLCQDSFART  905 (1014)
T ss_pred             HHHhccHHHhccchhHhHHHHhhhhHHHHHHhcCchHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            8886554321   1234445555566666667788788889999999999999987554 455555555532222     


Q ss_pred             chHHHHHHHHHHHHHhHhcC
Q 046417          272 KVKIVRETMNRSLEMWKEVP  291 (595)
Q Consensus       272 KVK~VRda~~~aL~~~K~i~  291 (595)
                      +-+.+|.-..+---..|-|.
T Consensus       906 ~~~~~~~qta~yKlq~k~i~  925 (1014)
T KOG4524|consen  906 ILKELRIQTAEYKLQLKSIS  925 (1014)
T ss_pred             hhhhHHHHHHHHHHHHHHHh
Confidence            23556655444333334333

>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]

Probab=88.57  E-value=7.5  Score=44.89  Aligned_cols=101  Identities=20%  Similarity=0.173  Sum_probs=71.5

Q ss_pred             HHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccchhhHHHHHHHHHhhccCCChhHHHHHHHHHHHhhhhhcCCcc
Q 046417           55 FSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPHLSKMISTVSCRLRDPDSSVRSACVAATTAMSLNITKPSF  134 (595)
Q Consensus        55 lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~PhLpkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~~~~~  134 (595)
                      +.+++-+|.--..+.+-.+|+.++..|+.+...-++---....-++-.+..|+-|-++.||.-|+++|..+-+.-.++. 
T Consensus        89 V~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~nee-  167 (885)
T COG5218          89 VAGTFYHLLRGTESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNEE-  167 (885)
T ss_pred             HHHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCChH-
Confidence            6677777776667777899999999999999888753333444667788899999999999999999998876543221 


Q ss_pred             hhccHHHHHHHhhcCChhHHHHHH
Q 046417          135 SVLSKPLIELILVEQDVNSQVGGA  158 (595)
Q Consensus       135 ~~~l~PLi~aLl~d~nk~VQ~~AA  158 (595)
                       .++..++-.++ .++|......+
T Consensus       168 -n~~~n~l~~~v-qnDPS~EVRr~  189 (885)
T COG5218         168 -NRIVNLLKDIV-QNDPSDEVRRL  189 (885)
T ss_pred             -HHHHHHHHHHH-hcCcHHHHHHH
Confidence             23444555553 34555444433

>KOG2149 consensus Uncharacterized conserved protein [Function unknown]

Probab=88.53  E-value=5  Score=44.09  Aligned_cols=128  Identities=21%  Similarity=0.241  Sum_probs=89.8

Q ss_pred             HHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccchhhHHHHHHHHHhhccCCChhHHHHHHHHHHHhhhhhcCC--
Q 046417           55 FSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPHLSKMISTVSCRLRDPDSSVRSACVAATTAMSLNITKP--  132 (595)
Q Consensus        55 lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~PhLpkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~~~--  132 (595)
                      +--+|.++.    +.+..+|+.++.=|-.+--.|++.+..|+-.+++.+..++.|-+..||.+....+--+...++.+  
T Consensus        60 lkeLl~qlk----HhNakvRkdal~glkd~l~s~p~~l~~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e~~  135 (393)
T KOG2149|consen   60 LKELLSQLK----HHNAKVRKDALNGLKDLLKSHPAELQSHLYALLQKLRELILDDDSLVRDALYQLLDSLILPACKEDQ  135 (393)
T ss_pred             HHHHHhhhc----CchHhhhHHHHHHHHHHHHhChHHHHHHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchhhh
Confidence            555555555    45689999999999888888999999999999999999999999999999988877766665532  


Q ss_pred             -cchh-ccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhh
Q 046417          133 -SFSV-LSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNPEVEQLRKLLPRLGKAV  187 (595)
Q Consensus       133 -~~~~-~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d~~~~~L~~Ll~rL~klL  187 (595)
                       ++.. ++.-+..|| +.--+.+|..+..=|.-+++..++....+.-.+++.+...+
T Consensus       136 sp~~~l~~~yi~~AM-Thit~~i~~dslkfL~~Ll~~~~p~~~~~~~~il~n~~d~i  191 (393)
T KOG2149|consen  136 SPMVSLLMPYISSAM-THITPEIQEDSLKFLSLLLERYPDTFSRYASKILENFKDVI  191 (393)
T ss_pred             cchHHHHHHHHHHHH-hhccHHHHHhhHHHHHHHHHHcChHHHHHHHHHHHHHHHHH
Confidence             2222 333344444 56677788888777777777655533333333443333333

>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length

Probab=88.36  E-value=8.8  Score=34.74  Aligned_cols=70  Identities=16%  Similarity=0.274  Sum_probs=54.9

Q ss_pred             hHHHHHHHHHhhcc-CCChhHHHHHHHHHHHhhhhhcCCcch-hccHHHHHHHhhcCChhH-HHHHHHHHHHHHhc
Q 046417           95 HLSKMISTVSCRLR-DPDSSVRSACVAATTAMSLNITKPSFS-VLSKPLIELILVEQDVNS-QVGGAMCLAAAIDA  167 (595)
Q Consensus        95 hLpkIL~~IvrrLk-D~ds~VR~Ac~~aLg~LA~~l~~~~~~-~~l~PLi~aLl~d~nk~V-Q~~AA~cLaaviE~  167 (595)
                      +++.|+|++.+.|+ -..+..|-+|.--++.|+...   ++. ..+..+++.+.......- +..+-.||..+++.
T Consensus         3 ~l~~lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~---~L~~~~l~~l~~~i~~~~~~~~~~~~~l~~L~~l~q~   75 (121)
T PF12397_consen    3 ILPRLLPFLLKGLKSSSSPDLQAAAYMILSVLASKV---PLSDEVLNALMESILKNWTQETVQRQALICLIVLCQS   75 (121)
T ss_pred             HHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhhc---CCcHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHc
Confidence            68899999999999 777889999999999999876   333 377888888865443332 36788888888876

The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.

>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=88.33  E-value=24  Score=42.03  Aligned_cols=211  Identities=17%  Similarity=0.168  Sum_probs=107.4

Q ss_pred             cCcHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccc---hhhHHHHHHH---------HHhhccCCChhHHHHHH
Q 046417           52 QDSFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSL---SPHLSKMIST---------VSCRLRDPDSSVRSACV  119 (595)
Q Consensus        52 ~~~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I---~PhLpkIL~~---------IvrrLkD~ds~VR~Ac~  119 (595)
                      +..+.+-+..|+-..+++++..|-++++-|-.+|-.|+..+   ..-|..++.-         |..+|+-....--+.-.
T Consensus       277 ~r~l~pavs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~v~~cN~elE~lItd~NrsIat~AITtLLKTG~e~sv~rLm  356 (865)
T KOG1078|consen  277 SRELAPAVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQAVTVCNLDLESLITDSNRSIATLAITTLLKTGTESSVDRLM  356 (865)
T ss_pred             HhhcchHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCccccccchhHHhhhcccccchhHHHHHHHHHhcchhHHHHHH
Confidence            33466677788887889999999999999999999998766   3445555542         22233322111111111


Q ss_pred             HHHHHhhhhhcCC----------------cc-h-hccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCCCchHHHH-----
Q 046417          120 AATTAMSLNITKP----------------SF-S-VLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNPEVEQL-----  176 (595)
Q Consensus       120 ~aLg~LA~~l~~~----------------~~-~-~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d~~~~~L-----  176 (595)
                      ..+..+...+.++                |. . .++.=|...|..+..-.-..+..=|+-.++|..++.-...|     
T Consensus       357 ~qI~~fv~disDeFKivvvdai~sLc~~fp~k~~~~m~FL~~~Lr~eGg~e~K~aivd~Ii~iie~~pdsKe~~L~~LCe  436 (865)
T KOG1078|consen  357 KQISSFVSDISDEFKIVVVDAIRSLCLKFPRKHTVMMNFLSNMLREEGGFEFKRAIVDAIIDIIEENPDSKERGLEHLCE  436 (865)
T ss_pred             HHHHHHHHhccccceEEeHHHHHHHHhhccHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHhCcchhhHHHHHHHH
Confidence            1222222333221                00 0 01111222221111111112222233333333222211111     


Q ss_pred             -------HHHHHHHHHhhcc---------------------CchhHHHHHHHHHHHHHHhhcccCcCcHHhHHHHHHHhc
Q 046417          177 -------RKLLPRLGKAVRI---------------------EGFKAKAAVLGVIGSVVRVGGARSKGVLDWLVPCLVEFL  228 (595)
Q Consensus       177 -------~~Ll~rL~klL~~---------------------~~~kaK~alLsAIgSlA~a~g~~~~~yl~~lmp~L~e~L  228 (595)
                             ..|..|++++|..                     .++.++++++.|+..+. ++   .....+.+.-.|+.|+
T Consensus       437 fIEDce~~~i~~rILhlLG~EgP~a~~Pskyir~iyNRviLEn~ivRaaAv~alaKfg-~~---~~~l~~sI~vllkRc~  512 (865)
T KOG1078|consen  437 FIEDCEFTQIAVRILHLLGKEGPKAPNPSKYIRFIYNRVILENAIVRAAAVSALAKFG-AQ---DVVLLPSILVLLKRCL  512 (865)
T ss_pred             HHHhccchHHHHHHHHHHhccCCCCCCcchhhHHHhhhhhhhhhhhHHHHHHHHHHHh-cC---CCCccccHHHHHHHHh
Confidence                   2344566666631                     23346666666666544 11   1233466777888999


Q ss_pred             cCCCHHHHHHHHHHHHHHHHHhHHhHHHH--HHHHHHHHH
Q 046417          229 CCDDWATRKAAAEVLGKVAVFDKDLATEY--KRSCLAALE  266 (595)
Q Consensus       229 ~~dDW~~RkaAaEaLgsIA~avge~f~py--~~~~I~~Le  266 (595)
                      .|.|-.+|-.|.=+|..+-..-.....+|  ...||.-||
T Consensus       513 ~D~DdevRdrAtf~l~~l~~~~~~l~~~~~~l~~s~~~le  552 (865)
T KOG1078|consen  513 NDSDDEVRDRATFYLKNLEEKDDVLNQNYSGLFVSIPGLE  552 (865)
T ss_pred             cCchHHHHHHHHHHHHHhhhhhhhhcccccccccccchhH
Confidence            99999999999988888864333333333  234455555

>KOG2137 consensus Protein kinase [Signal transduction mechanisms]

Probab=88.02  E-value=15  Score=43.12  Aligned_cols=124  Identities=8%  Similarity=0.140  Sum_probs=87.5

Q ss_pred             HHHHHHHHhhhcCCCChHHHHHHHHHHHHHhCCcCc-HHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHcc-ccchhhH
Q 046417           19 LKQRVITCLNKLADRDTLPVATAELESIARTLTQDS-FSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHG-DSLSPHL   96 (595)
Q Consensus        19 lk~rvl~~L~KL~DrDT~r~A~~~LD~lA~~L~~~~-lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~g-d~I~PhL   96 (595)
                      +.-.+.-++++-.-.++.-+=++-+|.|.+.++++. ...+|+.|..+.++.+....+.++..++.++|.-. -.+..  
T Consensus       350 ~~p~l~pi~~~~~~~~~~l~i~e~mdlL~~Kt~~e~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD~~~vk~--  427 (700)
T KOG2137|consen  350 MLPALKPIYSASDPKQALLFILENMDLLKEKTPPEEVKEKILPLLYRSLEDSDVQIQELALQILPTVAESIDVPFVKQ--  427 (700)
T ss_pred             hhHHHHHHhccCCcccchhhHHhhHHHHHhhCChHHHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhccHHHHHH--
Confidence            334444455543344567778888899999999766 88999999998888889999999999999999885 22222  


Q ss_pred             HHHHHHHHh-hccCCChhHHHHHHHHHHHhhhhhcCCcchhccHHHHHHH
Q 046417           97 SKMISTVSC-RLRDPDSSVRSACVAATTAMSLNITKPSFSVLSKPLIELI  145 (595)
Q Consensus        97 pkIL~~Ivr-rLkD~ds~VR~Ac~~aLg~LA~~l~~~~~~~~l~PLi~aL  145 (595)
                       .|+|.|-. .++.....|+..|+-+++.+++.+-.......+.|++..+
T Consensus       428 -~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~lD~~~v~d~~lpi~~~~  476 (700)
T KOG2137|consen  428 -AILPRLKNLAFKTTNLYVKVNVLPCLAGLIQRLDKAAVLDELLPILKCI  476 (700)
T ss_pred             -HHHHHhhcchhcccchHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Confidence             23333333 3667788899999999999996663211112566666666

>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []

Probab=87.90  E-value=49  Score=37.10  Aligned_cols=238  Identities=14%  Similarity=0.078  Sum_probs=127.0

Q ss_pred             CCCCChhHHHHHHHHHhhhcCCCC---hHHHHHHHHHHHHHhCCc---CcHHHHHHhhhhcCCCC-ChHHHHHHHHHHHH
Q 046417           11 SPPPSTNDLKQRVITCLNKLADRD---TLPVATAELESIARTLTQ---DSFSSFLNCLQTTDSSS-KSPVRKQCVNLLTL   83 (595)
Q Consensus        11 ~~~~~~~~lk~rvl~~L~KL~DrD---T~r~A~~~LD~lA~~L~~---~~lp~fL~~L~d~~ss~-kp~vRKaaI~lLG~   83 (595)
                      -..|..++|=+.+++.+.+-+..+   --||-+..|-.+-..+.|   ..++.+...|.....++ ||..=-...-.+|+
T Consensus        19 di~p~~~~ll~~Lf~~i~~~~s~ENeylMk~iMRvl~~~~e~~~p~~~~il~~L~~il~~v~kNPsnP~FnHylFEsi~~   98 (435)
T PF03378_consen   19 DIQPFAQQLLQNLFALIEKPGSAENEYLMKCIMRVLSVLQEDILPIAVEILQHLTAILKEVSKNPSNPRFNHYLFESIGA   98 (435)
T ss_dssp             GTTCCHHHHHHHHHHHHHTT-STC-HHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHHHHHHTS---HHHHHHHHHHHHH
T ss_pred             HhhhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchhhhHHHHHHH
Confidence            345667888888888888844322   344444444443333322   12445555554433333 56666777788888


Q ss_pred             HHHHcc----ccchhhHHHHHHHHHhhccCCChhHHHHHHHHHHHhhhhhcCCcc----hhccHHHHHHHhhcCChhHHH
Q 046417           84 LSRSHG----DSLSPHLSKMISTVSCRLRDPDSSVRSACVAATTAMSLNITKPSF----SVLSKPLIELILVEQDVNSQV  155 (595)
Q Consensus        84 lAEg~g----d~I~PhLpkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~~~~~----~~~l~PLi~aLl~d~nk~VQ~  155 (595)
                      +.+.+.    +.+..+-+.++|.+..-|+..=...--=+-.-|+.|-+.....+.    ..+++||+..-+-+..-++-.
T Consensus        99 lir~~~~~~~~~v~~~E~~L~P~f~~ILq~dV~EF~PYvfQIla~Lle~~~~~~~p~~y~~L~~~Ll~p~lWe~~gniPa  178 (435)
T PF03378_consen   99 LIRFVCEADPEAVSQFEEALFPPFQEILQQDVQEFIPYVFQILAQLLELRPSSPLPDAYKQLFPPLLSPALWERRGNIPA  178 (435)
T ss_dssp             HHHHS-GGGHH---HHHHHHHHHHHHHHHTT-TTTHHHHHHHHHHHHHHSS--S--TTTGGGHHHHTSGGGGGSTTTHHH
T ss_pred             HHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHcCcchhccCCCcCc
Confidence            877643    444455556666666555433211111112233444444321111    125555554443344445543


Q ss_pred             HHHHHHHHHHhcCCCchH--HHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHhhc-ccCcCcHHhHHHHHHHhcc-CC
Q 046417          156 GGAMCLAAAIDAAPNPEV--EQLRKLLPRLGKAVRIEGFKAKAAVLGVIGSVVRVGG-ARSKGVLDWLVPCLVEFLC-CD  231 (595)
Q Consensus       156 ~AA~cLaaviE~a~d~~~--~~L~~Ll~rL~klL~~~~~kaK~alLsAIgSlA~a~g-~~~~~yl~~lmp~L~e~L~-~d  231 (595)
                      -.. -|.++++-.+..+.  ++++.++..+-|++.+.....  ...+.+.+++.... ....+|++.++..|...|. +.
T Consensus       179 lvr-LL~a~i~k~~~~i~~~~~l~~iLgvFQkLi~sk~~D~--~gF~LL~~iv~~~p~~~l~~yl~~I~~lll~RLq~sk  255 (435)
T PF03378_consen  179 LVR-LLQAYIKKDPSFIVANNQLEPILGVFQKLIASKANDH--YGFDLLESIVENLPPEALEPYLKQIFTLLLTRLQSSK  255 (435)
T ss_dssp             HHH-HHHHHHHHHGGG----S-CHHHHHHHHHHHT-TTCHH--HHHHHHHHHHHHS-HHHHGGGHHHHHHHHHHHHHHC-
T ss_pred             HHH-HHHHHHHhCchhhcchhhHHHHHHHHHHHHCCCCcch--HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhCC
Confidence            322 37777776544442  588899999999998775443  34577888887543 3457899999888888886 34


Q ss_pred             CHHHHHHHHHHHHHHHHHhH
Q 046417          232 DWATRKAAAEVLGKVAVFDK  251 (595)
Q Consensus       232 DW~~RkaAaEaLgsIA~avg  251 (595)
                      -+.-.+.-+-.++.++...|
T Consensus       256 T~kf~~~fv~F~~~~~~~~g  275 (435)
T PF03378_consen  256 TEKFVKRFVVFLSLFAIKYG  275 (435)
T ss_dssp             -HHHHHHHHHHHHHHHHHH-
T ss_pred             cHHHHHHHHHHHHHHHHHcC
Confidence            44555555555565555444

CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.

>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]

Probab=87.63  E-value=46  Score=39.79  Aligned_cols=151  Identities=9%  Similarity=0.023  Sum_probs=101.5

Q ss_pred             hHHHHHHHHHHHHHhCCcCcHHHHHHhhh-hc---CCCCChHHHHHHHHHHHHHHHHcc---------ccc-hhhHHHHH
Q 046417           35 TLPVATAELESIARTLTQDSFSSFLNCLQ-TT---DSSSKSPVRKQCVNLLTLLSRSHG---------DSL-SPHLSKMI  100 (595)
Q Consensus        35 T~r~A~~~LD~lA~~L~~~~lp~fL~~L~-d~---~ss~kp~vRKaaI~lLG~lAEg~g---------d~I-~PhLpkIL  100 (595)
                      +.|--+.-+-.....++|+.+-.++..-. .+   ..+..|..-+.+|.++-.++|+-.         |.. ..-|-.++
T Consensus       414 e~RkkLk~fqdti~~idpsl~l~~Ir~slS~al~ns~e~swqevE~Aiylly~lgE~l~~~~~~~nsgd~s~~~vl~~~~  493 (980)
T KOG2021|consen  414 EVRKKLKNFQDTIVVIDPSLFLNNIRQSLSAALMNSKEESWQEVELAIYLLYNLGECLKNNYFGLNSGDISTSQVLFLNE  493 (980)
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhccccccccccCccccHHHHHHHHH
Confidence            33444444433444455655333333222 22   244568999999999999999863         222 23455677


Q ss_pred             HHHHhh--ccCCChhHHHHHHHHHHHhhhhhcCCcchhccHHHHHHHhh-----cCChhHHHHHHHHHHHHHhcCCCchH
Q 046417          101 STVSCR--LRDPDSSVRSACVAATTAMSLNITKPSFSVLSKPLIELILV-----EQDVNSQVGGAMCLAAAIDAAPNPEV  173 (595)
Q Consensus       101 ~~Ivrr--LkD~ds~VR~Ac~~aLg~LA~~l~~~~~~~~l~PLi~aLl~-----d~nk~VQ~~AA~cLaaviE~a~d~~~  173 (595)
                      +.++..  +..+++.|.--=.+.+.++.......+  ..++-++.+.++     +++.+|.-+|.|-+-+++-.....+.
T Consensus       494 ~ll~tsqv~~h~h~lVqLlfmE~ivRY~kff~~es--q~ip~vL~aFld~rglhn~ne~Vr~RawYLF~RfVKlLkkqlv  571 (980)
T KOG2021|consen  494 LLLMTSQVLAHDHELVQLLFMELIVRYNKFFSTES--QKIPLVLNAFLDSRGLHNKNENVRLRAWYLFTRFVKLLKKQLV  571 (980)
T ss_pred             HHHHHcccccCCchHHHHHHHHHHHHHHHHHhcch--hhhHHHHHHHccchhccccccccchHHHHHHHHHHHHHHHHHH
Confidence            777654  677888888888888888887774322  355566666543     67888999999999999988777677


Q ss_pred             HHHHHHHHHHHHhh
Q 046417          174 EQLRKLLPRLGKAV  187 (595)
Q Consensus       174 ~~L~~Ll~rL~klL  187 (595)
                      ||.++++.+|..+|
T Consensus       572 pfie~iln~iqdlL  585 (980)
T KOG2021|consen  572 PFIEEILNKIQDLL  585 (980)
T ss_pred             HHHHHHHHHHHHHH
Confidence            88888888888777

>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1

Probab=87.55  E-value=3.9  Score=37.15  Aligned_cols=90  Identities=17%  Similarity=0.208  Sum_probs=67.6

Q ss_pred             HHHHHHHHHHHHhhccC----chhHHHHHHHHHHHHHHhhcccCcCcHHhHHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Q 046417          174 EQLRKLLPRLGKAVRIE----GFKAKAAVLGVIGSVVRVGGARSKGVLDWLVPCLVEFLCCDDWATRKAAAEVLGKVAVF  249 (595)
Q Consensus       174 ~~L~~Ll~rL~klL~~~----~~kaK~alLsAIgSlA~a~g~~~~~yl~~lmp~L~e~L~~dDW~~RkaAaEaLgsIA~a  249 (595)
                      +++--|+.+|...+.+.    .+.-|...|.+|+-++..+|..-..+.+++|-+|+..|..++  +|..|++|...+...
T Consensus         7 ~~~LGil~~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~~~g~~i~~a~pQI~acL~saL~~~e--L~~~al~~W~~~i~~   84 (107)
T smart00802        7 DHFLGILAVFSNILHDSSGKKPYNEKKRALRSIGFLIKLMGKHISSALPQIMACLQSALEIPE--LRSLALRCWHVLIKT   84 (107)
T ss_pred             HHHHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchh--HHHHHHHHHHHHHHh
Confidence            45556777777777654    344577888999999987766556778888999999997665  899999999999988


Q ss_pred             hH-HhHHHHHHHHHHHH
Q 046417          250 DK-DLATEYKRSCLAAL  265 (595)
Q Consensus       250 vg-e~f~py~~~~I~~L  265 (595)
                      +. +-+.+....++.++
T Consensus        85 L~~~~l~~ll~~~~~~i  101 (107)
T smart00802       85 LKEEELGPLLDQIFAAI  101 (107)
T ss_pred             CCHHHHHHHHHHHHHHH
Confidence            85 56666666655544

Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.

>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis

Probab=87.41  E-value=47  Score=36.00  Aligned_cols=247  Identities=13%  Similarity=0.131  Sum_probs=139.5

Q ss_pred             ChhHHHHHHHHHhhhcC--CCChHHHHHHHHHHHHHh------------------------C-CcCcHHHHHHhhhhcCC
Q 046417           15 STNDLKQRVITCLNKLA--DRDTLPVATAELESIART------------------------L-TQDSFSSFLNCLQTTDS   67 (595)
Q Consensus        15 ~~~~lk~rvl~~L~KL~--DrDT~r~A~~~LD~lA~~------------------------L-~~~~lp~fL~~L~d~~s   67 (595)
                      ++.|+-+.+...|.+|+  ..+..+-+.+++......                        + ..+.+..++.+|..   
T Consensus        11 tP~ElVr~l~e~L~~L~~~~~~~~~k~~eeisK~L~~mK~IL~G~~e~ep~~e~v~qLa~Ei~~~dll~~Li~~L~~---   87 (335)
T PF08569_consen   11 TPAELVRSLREALEKLDSKSDKKREKAQEEISKYLQQMKEILYGDGEPEPNPEQVAQLAQEIYRSDLLYLLIRNLPK---   87 (335)
T ss_dssp             -HHHHHHHHHHHHHHHHSS-HHHHHHHHHHHHHHHHHHHHHHHS-SS----HHHHHHHHHHHHHHTHHHHHHHTGGG---
T ss_pred             CHHHHHHHHHHHHHHhccccCcchhhHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHhCHHHHHHHHhhh---
Confidence            35678888888888882  112333344443332211                        1 11223444444443   


Q ss_pred             CCChHHHHHHHHHHHHHHHHcc--------ccchhhHHHHHHHHHhhccCCChhHHHHHHHHHHHhhhhhcCCcc-----
Q 046417           68 SSKSPVRKQCVNLLTLLSRSHG--------DSLSPHLSKMISTVSCRLRDPDSSVRSACVAATTAMSLNITKPSF-----  134 (595)
Q Consensus        68 s~kp~vRKaaI~lLG~lAEg~g--------d~I~PhLpkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~~~~~-----  134 (595)
                       -+...||.+...++.+-+...        +++..|.|+|+..+++.-.+||..+      ..|.|-+.+++-+.     
T Consensus        88 -L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~~~dial------~~g~mlRec~k~e~l~~~i  160 (335)
T PF08569_consen   88 -LDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYENPDIAL------NCGDMLRECIKHESLAKII  160 (335)
T ss_dssp             -S-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGGSTTTHH------HHHHHHHHHTTSHHHHHHH
T ss_pred             -CCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhcCccccc------hHHHHHHHHHhhHHHHHHH
Confidence             457999999999999988763        3455666999999999999998432      23555555544211     


Q ss_pred             --hhccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCCCchHHHH----HHHHHHHHHhhccCchhHHHHHHHHHHHHHHh
Q 046417          135 --SVLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNPEVEQL----RKLLPRLGKAVRIEGFKAKAAVLGVIGSVVRV  208 (595)
Q Consensus       135 --~~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d~~~~~L----~~Ll~rL~klL~~~~~kaK~alLsAIgSlA~a  208 (595)
                        ...+..+++.+ ...+-.+...|..-+..+.-.-.....+||    ..+...+.++|.+++|-+|-+.|-.+|.+.--
T Consensus       161 L~~~~f~~ff~~~-~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqslkLL~ellld  239 (335)
T PF08569_consen  161 LYSECFWKFFKYV-QLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQSLKLLGELLLD  239 (335)
T ss_dssp             HTSGGGGGHHHHT-TSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHHHHHHHHHHHS
T ss_pred             hCcHHHHHHHHHh-cCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehhhHHHHHHHHHc
Confidence              01444566665 344444554444444444433222223455    46777889999999999999999999988842


Q ss_pred             --hcccCcCcH--HhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHh------HHhHHHHHHHHHHHHHhccCCc
Q 046417          209 --GGARSKGVL--DWLVPCLVEFLCCDDWATRKAAAEVLGKVAVFD------KDLATEYKRSCLAALETRRFDK  272 (595)
Q Consensus       209 --~g~~~~~yl--~~lmp~L~e~L~~dDW~~RkaAaEaLgsIA~av------ge~f~py~~~~I~~Le~crfDK  272 (595)
                        .-.....|+  +.-+-.+...|.+..-..|..|.-..-....--      -+.+..=....++.|....-|+
T Consensus       240 r~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp~K~~~I~~iL~~Nr~kLl~fl~~f~~~~  313 (335)
T PF08569_consen  240 RSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANPNKPPPIVDILIKNREKLLRFLKDFHTDR  313 (335)
T ss_dssp             GGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-SS-BHHHHHHHHHTHHHHHHHHHTTTTT-
T ss_pred             hhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHHhCCCCC
Confidence              111112222  223455556667777777888877777665432      1223323467788888777776

In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.

>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]

Probab=87.21  E-value=11  Score=44.49  Aligned_cols=159  Identities=16%  Similarity=0.122  Sum_probs=89.7

Q ss_pred             CCCCChHHHHHHHHHHHHHHHHccccchhhHHHHHHHHHhh-ccCCChhHHHHHHHHHHHhhhhhcCCcchhccHHHHHH
Q 046417           66 DSSSKSPVRKQCVNLLTLLSRSHGDSLSPHLSKMISTVSCR-LRDPDSSVRSACVAATTAMSLNITKPSFSVLSKPLIEL  144 (595)
Q Consensus        66 ~ss~kp~vRKaaI~lLG~lAEg~gd~I~PhLpkIL~~Ivrr-LkD~ds~VR~Ac~~aLg~LA~~l~~~~~~~~l~PLi~a  144 (595)
                      ..+.+|-.|..++..++..=-|-|..      ++|..++.- ..|++-.||+|++-+||-+.   ++.|  ..++-.++.
T Consensus       528 ~~dkdpilR~~Gm~t~alAy~GTgnn------kair~lLh~aVsD~nDDVrRaAVialGFVl---~~dp--~~~~s~V~l  596 (929)
T KOG2062|consen  528 LRDKDPILRYGGMYTLALAYVGTGNN------KAIRRLLHVAVSDVNDDVRRAAVIALGFVL---FRDP--EQLPSTVSL  596 (929)
T ss_pred             hcCCchhhhhhhHHHHHHHHhccCch------hhHHHhhcccccccchHHHHHHHHHheeeE---ecCh--hhchHHHHH
Confidence            34457999999998877655555532      223333322 57888899999998887654   2333  245556666


Q ss_pred             HhhcCChhHHHHHHHHHHHHHhcCCCch-HHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHhhcccCcCcHHhHHHH
Q 046417          145 ILVEQDVNSQVGGAMCLAAAIDAAPNPE-VEQLRKLLPRLGKAVRIEGFKAKAAVLGVIGSVVRVGGARSKGVLDWLVPC  223 (595)
Q Consensus       145 Ll~d~nk~VQ~~AA~cLaaviE~a~d~~-~~~L~~Ll~rL~klL~~~~~kaK~alLsAIgSlA~a~g~~~~~yl~~lmp~  223 (595)
                      |...-|++|.-|||+||--+|-+.+... ...|+.|+    +  +-.+|-.+.|+|..-=-+.+..... -|-+..+-..
T Consensus       597 Lses~N~HVRyGaA~ALGIaCAGtG~~eAi~lLepl~----~--D~~~fVRQgAlIa~amIm~Q~t~~~-~pkv~~frk~  669 (929)
T KOG2062|consen  597 LSESYNPHVRYGAAMALGIACAGTGLKEAINLLEPLT----S--DPVDFVRQGALIALAMIMIQQTEQL-CPKVNGFRKQ  669 (929)
T ss_pred             HhhhcChhhhhhHHHHHhhhhcCCCcHHHHHHHhhhh----c--ChHHHHHHHHHHHHHHHHHhccccc-CchHHHHHHH
Confidence            6456699999999999999887754422 22333322    2  2235544555443222222333332 2333444455


Q ss_pred             HHHhcc--CCCHHHHHHHHHH
Q 046417          224 LVEFLC--CDDWATRKAAAEV  242 (595)
Q Consensus       224 L~e~L~--~dDW~~RkaAaEa  242 (595)
                      +...+.  ++|-.+..-|+-+
T Consensus       670 l~kvI~dKhEd~~aK~GAilA  690 (929)
T KOG2062|consen  670 LEKVINDKHEDGMAKFGAILA  690 (929)
T ss_pred             HHHHhhhhhhHHHHHHHHHHH
Confidence            555554  3454444444433

>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]

Probab=87.09  E-value=76  Score=38.04  Aligned_cols=203  Identities=14%  Similarity=0.146  Sum_probs=119.1

Q ss_pred             HHHHhhhhcCCCCChHHHHHHHHHHHHHHHHc--cccchhhHHHHHHHHHhhccCCChhHHHHHHHH-HHHhhhhhcCCc
Q 046417           57 SFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSH--GDSLSPHLSKMISTVSCRLRDPDSSVRSACVAA-TTAMSLNITKPS  133 (595)
Q Consensus        57 ~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~--gd~I~PhLpkIL~~IvrrLkD~ds~VR~Ac~~a-Lg~LA~~l~~~~  133 (595)
                      -.+.|+.+    ..-+++=++.+|+-.+-..-  .+.+..|+|.+|..++..-++=+..+-.-|.+. ++++++.+.  |
T Consensus       503 ~t~ncl~n----n~lpv~ieAalAlq~fi~~~q~h~k~sahVp~tmekLLsLSn~feiD~LS~vMe~fVe~fseELs--p  576 (970)
T COG5656         503 NTHNCLKN----NHLPVMIEAALALQFFIFNEQSHEKFSAHVPETMEKLLSLSNTFEIDPLSMVMESFVEYFSEELS--P  576 (970)
T ss_pred             HHHHHHhc----CCcchhhhHHHHHHHHHhchhhhHHHHhhhhHHHHHHHHhcccccchHHHHHHHHHHHHhHHhhc--h
Confidence            34445544    22467777777776655433  477899999999999999999888777777666 477777774  3


Q ss_pred             chh---------ccHHHHHHHhhcC---Ch---hHHHHHHHHHHH---HHhcCCC-c-hHHHH-----------------
Q 046417          134 FSV---------LSKPLIELILVEQ---DV---NSQVGGAMCLAA---AIDAAPN-P-EVEQL-----------------  176 (595)
Q Consensus       134 ~~~---------~l~PLi~aLl~d~---nk---~VQ~~AA~cLaa---viE~a~d-~-~~~~L-----------------  176 (595)
                      +..         |++ +...++.+.   ..   .-|.+|..-|..   ++=+... + ++.|+                 
T Consensus       577 fa~eLa~~Lv~qFlk-iaq~l~ens~d~~s~vDDKqmaasGiL~T~~smiLSlen~p~vLk~le~slypvi~Filkn~i~  655 (970)
T COG5656         577 FAPELAGSLVRQFLK-IAQSLLENSSDTSSVVDDKQMAASGILRTIESMILSLENRPLVLKYLEVSLYPVISFILKNEIS  655 (970)
T ss_pred             hHHHHHHHHHHHHHH-HHHHHHcCCccccccccHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhhHH
Confidence            321         332 333332211   11   124444433333   2211111 0 11111                 


Q ss_pred             ------------------------HHHHHHHHHhhccCch-hHHHHHHHHHHHHHHhhcccC---cCcHHhHHHHHHHhc
Q 046417          177 ------------------------RKLLPRLGKAVRIEGF-KAKAAVLGVIGSVVRVGGARS---KGVLDWLVPCLVEFL  228 (595)
Q Consensus       177 ------------------------~~Ll~rL~klL~~~~~-kaK~alLsAIgSlA~a~g~~~---~~yl~~lmp~L~e~L  228 (595)
                                              ..+.+.+.++++.+.. .--..+..++..++..|+..|   .-|...+...+..++
T Consensus       656 dfy~Ea~dildg~tf~skeI~pimwgi~Ell~~~l~~~~t~~y~ee~~~al~nfityG~~ef~~~~~y~~i~~eI~~~~l  735 (970)
T COG5656         656 DFYQEALDILDGYTFMSKEIEPIMWGIFELLLNLLIDEITAVYSEEVADALDNFITYGKTEFMDAGIYGSICSEISKLCL  735 (970)
T ss_pred             HHHHHHHHHHhhhhHHHHHhhhhhhHHHHHHHhcccccchhhhHHHHHHHHHHHHHhCccccccccchhHHHHHHHHHHH
Confidence                                    1233334444444432 112344467777777776543   456666777777788


Q ss_pred             cCCCH--HHHHHHHHHHHHHHHHhHH-hHHHHHHHHHHHHH
Q 046417          229 CCDDW--ATRKAAAEVLGKVAVFDKD-LATEYKRSCLAALE  266 (595)
Q Consensus       229 ~~dDW--~~RkaAaEaLgsIA~avge-~f~py~~~~I~~Le  266 (595)
                      .+++-  ..+..+++.+..++..+++ ...+|.+..+.+.-
T Consensus       736 ~sE~n~l~D~~~vc~i~e~l~Ln~rd~Ll~qy~plfi~vag  776 (970)
T COG5656         736 CSEENFLEDFIGVCRIIESLILNIRDELLSQYLPLFISVAG  776 (970)
T ss_pred             cchhhhHHHHHHHHHHHHHHHHHccchhHHhhhHHHHHHHh
Confidence            76654  7899999999999999974 88888877666544

>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane

Probab=87.02  E-value=1.6  Score=39.68  Aligned_cols=88  Identities=16%  Similarity=0.180  Sum_probs=59.5

Q ss_pred             hHHHHHHHHHHHHHHHHcccc----------------chhhHHHHHHHHHhhccCCC----hhHHHHHHHHHHHhhhhhc
Q 046417           71 SPVRKQCVNLLTLLSRSHGDS----------------LSPHLSKMISTVSCRLRDPD----SSVRSACVAATTAMSLNIT  130 (595)
Q Consensus        71 p~vRKaaI~lLG~lAEg~gd~----------------I~PhLpkIL~~IvrrLkD~d----s~VR~Ac~~aLg~LA~~l~  130 (595)
                      +......+..|..+.|-..+.                +..+++.|+.++.+.|....    ..+..++..+++.+..|+.
T Consensus        39 ~~~~~~~L~iL~~l~eEi~~~~~~~~~~~r~~~l~~~l~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~~~  118 (148)
T PF08389_consen   39 PQHLELVLRILRILPEEITDFRRSSLSQERRRELKDALRSNSPDILEILSQILSQSSSEANEELVKAALKCLKSWISWIP  118 (148)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTSHCCHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTTS-
T ss_pred             hhHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHhCC
Confidence            677777888888877777542                55567888888888887765    6678888888888888763


Q ss_pred             CCcch--hccHHHHHHHhhcCChhHHHHHHHHH
Q 046417          131 KPSFS--VLSKPLIELILVEQDVNSQVGGAMCL  161 (595)
Q Consensus       131 ~~~~~--~~l~PLi~aLl~d~nk~VQ~~AA~cL  161 (595)
                      -....  .++.-++..|   +++..+..|+-||
T Consensus       119 ~~~i~~~~~l~~~~~~l---~~~~~~~~A~~cl  148 (148)
T PF08389_consen  119 IELIINSNLLNLIFQLL---QSPELREAAAECL  148 (148)
T ss_dssp             HHHHHSSSHHHHHHHHT---TSCCCHHHHHHHH
T ss_pred             HHHhccHHHHHHHHHHc---CCHHHHHHHHHhC
Confidence            11111  1455555555   3445688888876

Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....

>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised

Probab=86.46  E-value=41  Score=35.83  Aligned_cols=204  Identities=14%  Similarity=0.126  Sum_probs=105.8

Q ss_pred             HHHHHHHHhhhcCCCChHHHHHH-HHHHHHHhC---CcCcHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHH-----Hcc
Q 046417           19 LKQRVITCLNKLADRDTLPVATA-ELESIARTL---TQDSFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSR-----SHG   89 (595)
Q Consensus        19 lk~rvl~~L~KL~DrDT~r~A~~-~LD~lA~~L---~~~~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAE-----g~g   89 (595)
                      +-.++++.|..+-..|+...|+. +++.++.++   ..+.-..++..+..-..+-++.+|+.-+.++|.+..     ...
T Consensus        19 ~s~~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~~~~~~~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~~~~~~~~~   98 (339)
T PF12074_consen   19 LSSKIVQGLSPLLSKESNEAALSALLSALFKHLFFLSSELPKKVVDAFKKGLKDKKPPVRRAWLLCLGEALWESPNSDSL   98 (339)
T ss_pred             hHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhCcCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhhccCchHH
Confidence            45555555555544465555443 335555554   222233444555444555678899999999999885     445


Q ss_pred             ccchhhHHHHHHHHHhhccCCChhHH---HHHHHHHHHhhhhhcC--------------Ccchh-ccHH-HHHHHhhcCC
Q 046417           90 DSLSPHLSKMISTVSCRLRDPDSSVR---SACVAATTAMSLNITK--------------PSFSV-LSKP-LIELILVEQD  150 (595)
Q Consensus        90 d~I~PhLpkIL~~IvrrLkD~ds~VR---~Ac~~aLg~LA~~l~~--------------~~~~~-~l~P-Li~aLl~d~n  150 (595)
                      .++.+.+|.++.++-+....|-+...   -.|+.++-.+..+..+              .+-.. ++.+ ++.-|   .+
T Consensus        99 ~~~~~~~~~L~~~~~~~~~~p~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~kps~ll~~kvyskl---~~  175 (339)
T PF12074_consen   99 KFAEPFLPKLLQSLKEASANPLQSAQNGELVGAYVLLALSSWKLDKIDSKNISFWSLALDPKPSFLLSEKVYSKL---AS  175 (339)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCCccccccHHHHHHHHHhccccchhhhhhhhhhhhhccCCCcchhcCHHHHhcc---CC
Confidence            66777778888877777777655432   1122222111111100              00001 1211 22222   12


Q ss_pred             hhHHHHHHHHHHHHHhcCCCchH-HHHHHHHHHHHHhhccC--chhHHHHHHHHHHHHHHhhcccCcCcHHhHHHHHHHh
Q 046417          151 VNSQVGGAMCLAAAIDAAPNPEV-EQLRKLLPRLGKAVRIE--GFKAKAAVLGVIGSVVRVGGARSKGVLDWLVPCLVEF  227 (595)
Q Consensus       151 k~VQ~~AA~cLaaviE~a~d~~~-~~L~~Ll~rL~klL~~~--~~kaK~alLsAIgSlA~a~g~~~~~yl~~lmp~L~e~  227 (595)
                      .....-.+.+|.++......... .....+...++.++-++  ..++|..+++++..+.......   +-..++..+-++
T Consensus       176 ~~d~~w~~~al~~~~~~~~~~~~~~~~~~~~~a~i~ll~s~~~~~~vR~~A~~~l~~l~~~~~~~---l~~~li~~l~~~  252 (339)
T PF12074_consen  176 EEDLCWLLRALEALLSDHPSELSSDKSSAWAQAFIYLLCSSNVSWKVRRAALSALKKLYASNPEL---LSKSLISGLWKW  252 (339)
T ss_pred             HhHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhChHH---HHHHHHHHHHHH
Confidence            22233445555555544322221 12345666677777777  7889988888888777543221   234445555544


Q ss_pred             c
Q 046417          228 L  228 (595)
Q Consensus       228 L  228 (595)
                      +
T Consensus       253 l  253 (339)
T PF12074_consen  253 L  253 (339)
T ss_pred             H
Confidence            4

This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.

>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex

Probab=86.45  E-value=5.7  Score=42.89  Aligned_cols=125  Identities=14%  Similarity=0.190  Sum_probs=78.4

Q ss_pred             HHHHHHHhCC-cCcHHHHHHhhhhcCC--CC-ChHHHHHHHHHHHHHHHHccccchhhHHHHHHHHHhhc----------
Q 046417           42 ELESIARTLT-QDSFSSFLNCLQTTDS--SS-KSPVRKQCVNLLTLLSRSHGDSLSPHLSKMISTVSCRL----------  107 (595)
Q Consensus        42 ~LD~lA~~L~-~~~lp~fL~~L~d~~s--s~-kp~vRKaaI~lLG~lAEg~gd~I~PhLpkIL~~IvrrL----------  107 (595)
                      .|+.|.+.-. ...+|.|+..|.+...  .. +...=...++.+-.|..--.=++-|||..|||.++..|          
T Consensus       198 aL~sL~tD~gl~~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N~~l~le~Ylh~Lip~vltclv~~~l~~~~~  277 (343)
T cd08050         198 ALQSLRTDPGLQQLLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDNPNLHLEPYLHQLIPSVLTCLVAKQLCSRPP  277 (343)
T ss_pred             HHHHhccCCCchhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcCCCCchHHhHHHHHHHHHHHhhhHhhcCCCC
Confidence            4556666443 2237777777766531  11 34444444555555554445677999999999888665          


Q ss_pred             cCCChhHHHHHHHHHHHhhhhhcCC-c-chh-ccHHHHHHHhhcCChh-HHHHHHHHHHHHHh
Q 046417          108 RDPDSSVRSACVAATTAMSLNITKP-S-FSV-LSKPLIELILVEQDVN-SQVGGAMCLAAAID  166 (595)
Q Consensus       108 kD~ds~VR~Ac~~aLg~LA~~l~~~-~-~~~-~l~PLi~aLl~d~nk~-VQ~~AA~cLaaviE  166 (595)
                      -+.+-.+|+-++..|+.++..+... + ... ++.-|..+|+....+. .+-||..+|.++..
T Consensus       278 ~~~h~~LRd~AA~ll~~i~~~f~~~y~~l~~ri~~tl~k~l~d~~~~~~~~YGAi~GL~~lG~  340 (343)
T cd08050         278 DDNHWALRDYAARLLAQICRKFSTSYNTLQPRITRTLLKALLDPKKPLTTHYGAIVGLSALGP  340 (343)
T ss_pred             CchHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHcCCCCCcchhhHHHHHHHHhCc
Confidence            2333478999999999999887542 1 112 5666777776444333 36788888888753

The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as

>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=86.05  E-value=83  Score=37.50  Aligned_cols=237  Identities=19%  Similarity=0.168  Sum_probs=139.7

Q ss_pred             hHHHHHHHHHhhhcCCCChHHH--HHHHHHHHH-----HhCCcCcHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHcc
Q 046417           17 NDLKQRVITCLNKLADRDTLPV--ATAELESIA-----RTLTQDSFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHG   89 (595)
Q Consensus        17 ~~lk~rvl~~L~KL~DrDT~r~--A~~~LD~lA-----~~L~~~~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~g   89 (595)
                      +-+|.-+.++-+-|..||+-.+  |++.+-.+.     +.+.+ .|+    -|.-+ .+....+|+.+.++|=.+-+..+
T Consensus       107 dl~klvin~iknDL~srn~~fv~LAL~~I~niG~re~~ea~~~-DI~----KlLvS-~~~~~~vkqkaALclL~L~r~sp  180 (938)
T KOG1077|consen  107 DLMKLVINSIKNDLSSRNPTFVCLALHCIANIGSREMAEAFAD-DIP----KLLVS-GSSMDYVKQKAALCLLRLFRKSP  180 (938)
T ss_pred             HHHHHHHHHHHhhhhcCCcHHHHHHHHHHHhhccHhHHHHhhh-hhH----HHHhC-CcchHHHHHHHHHHHHHHHhcCc
Confidence            4455556666677877774443  555554433     22211 233    22221 22346888888888888888899


Q ss_pred             ccchhhHHHHHHHHHhhccCCChhHHHHHHHHHHHhhhhhcCCcchh-ccHHHHHHHh-------hc---------CChh
Q 046417           90 DSLSPHLSKMISTVSCRLRDPDSSVRSACVAATTAMSLNITKPSFSV-LSKPLIELIL-------VE---------QDVN  152 (595)
Q Consensus        90 d~I~PhLpkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~~~~~~~-~l~PLi~aLl-------~d---------~nk~  152 (595)
                      |.+.|.  .-..-|+..|.|.+=.|-.|+.--+-.|+....+  ... -+.+-+.-|.       .+         +.|-
T Consensus       181 Dl~~~~--~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~--~yk~~~~~avs~L~riv~~~~t~~qdYTyy~vP~PW  256 (938)
T KOG1077|consen  181 DLVNPG--EWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPE--SYKTCLPLAVSRLSRIVVVVGTSLQDYTYYFVPAPW  256 (938)
T ss_pred             cccChh--hHHHHHHHHhCccccceeeehHHHHHHHHHcCCH--HHhhhHHHHHHHHHHHHhhcccchhhceeecCCChH
Confidence            988762  2234566788999877776666555555544421  111 1222222221       01         3456


Q ss_pred             HHHHHHHHHHHHHhcCCCch-HHHHHHHHHHHHHhhc----cC---chhHHHHHH-HHHHHHHHhhcccCcCcHHhHHHH
Q 046417          153 SQVGGAMCLAAAIDAAPNPE-VEQLRKLLPRLGKAVR----IE---GFKAKAAVL-GVIGSVVRVGGARSKGVLDWLVPC  223 (595)
Q Consensus       153 VQ~~AA~cLaaviE~a~d~~-~~~L~~Ll~rL~klL~----~~---~~kaK~alL-sAIgSlA~a~g~~~~~yl~~lmp~  223 (595)
                      .|.-.+..|... +...|+. ...|..++.+++...+    ..   +..+|+++| +||.-++..-.  .+..+...+..
T Consensus       257 L~vKl~rlLq~~-p~~~D~~~r~~l~evl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~--e~~ll~~~~~~  333 (938)
T KOG1077|consen  257 LQVKLLRLLQIY-PTPEDPSTRARLNEVLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHLDS--EPELLSRAVNQ  333 (938)
T ss_pred             HHHHHHHHHHhC-CCCCCchHHHHHHHHHHHHHhccccCccccchHhhhhHHHHHHHHHHHHHHcCC--cHHHHHHHHHH
Confidence            777777766655 2222222 3455566666655544    22   333777777 78776665432  24667888999


Q ss_pred             HHHhccCCCHHHHHHHHHHHHHHHHHh--HHhHHHHHHHHHHHHH
Q 046417          224 LVEFLCCDDWATRKAAAEVLGKVAVFD--KDLATEYKRSCLAALE  266 (595)
Q Consensus       224 L~e~L~~dDW~~RkaAaEaLgsIA~av--ge~f~py~~~~I~~Le  266 (595)
                      |..||++.+-..|--|+|.+..++..-  -+.+.-|...+|..|.
T Consensus       334 Lg~fls~rE~NiRYLaLEsm~~L~ss~~s~davK~h~d~Ii~sLk  378 (938)
T KOG1077|consen  334 LGQFLSHRETNIRYLALESMCKLASSEFSIDAVKKHQDTIINSLK  378 (938)
T ss_pred             HHHHhhcccccchhhhHHHHHHHHhccchHHHHHHHHHHHHHHhc
Confidence            999999988889999999999998753  2455555555555444

>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised

Probab=85.90  E-value=43  Score=37.55  Aligned_cols=55  Identities=13%  Similarity=0.067  Sum_probs=42.7

Q ss_pred             hHHHHHHHHHHHHHhCCcCcHHHHHH-hhhhcCCCCChHHHHHHHHHHHHHHHHcc
Q 046417           35 TLPVATAELESIARTLTQDSFSSFLN-CLQTTDSSSKSPVRKQCVNLLTLLSRSHG   89 (595)
Q Consensus        35 T~r~A~~~LD~lA~~L~~~~lp~fL~-~L~d~~ss~kp~vRKaaI~lLG~lAEg~g   89 (595)
                      ++-.|+..|-.+...++.+.+..++. .|..++++.-...|--+.+.+..-|..+.
T Consensus       103 ~Ri~aA~ALG~l~~~~~~~~~~~~~~~~L~~~L~S~sa~qR~~aalvl~ewa~~~~  158 (441)
T PF12054_consen  103 ARIAAAKALGLLLSYWPESSLQEIFQPLLLPYLNSPSATQRLLAALVLEEWAKACK  158 (441)
T ss_pred             HHHHHHHHHHHHHHhcccchHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhCc
Confidence            56678899999999998777766665 46666666667888888888888888776

This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.

>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]

Probab=85.67  E-value=15  Score=42.37  Aligned_cols=108  Identities=21%  Similarity=0.195  Sum_probs=73.5

Q ss_pred             hhhhcCCCCChHHHHHHHHHHHHHHHHccccchhhHHHHHHHHHhh-ccCCChhHHHHHHHHHHHhhhhhcCCcchhccH
Q 046417           61 CLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPHLSKMISTVSCR-LRDPDSSVRSACVAATTAMSLNITKPSFSVLSK  139 (595)
Q Consensus        61 ~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~PhLpkIL~~Ivrr-LkD~ds~VR~Ac~~aLg~LA~~l~~~~~~~~l~  139 (595)
                      .|.+...+.+|..|-+++..++..--|-|..      .++..++.- ..|.+-.||.|++-|||-++   ++++  ..+.
T Consensus       520 ~I~ell~d~ds~lRy~G~fs~alAy~GTgn~------~vv~~lLh~avsD~nDDVrRAAViAlGfvc---~~D~--~~lv  588 (926)
T COG5116         520 YINELLYDKDSILRYNGVFSLALAYVGTGNL------GVVSTLLHYAVSDGNDDVRRAAVIALGFVC---CDDR--DLLV  588 (926)
T ss_pred             HHHHHhcCchHHhhhccHHHHHHHHhcCCcc------hhHhhhheeecccCchHHHHHHHHheeeeE---ecCc--chhh
Confidence            4444455677899999998887766666643      344444443 68889999999998877654   3332  2455


Q ss_pred             HHHHHHhhcCChhHHHHHHHHHHHHHhcCCCch-HHHHHHH
Q 046417          140 PLIELILVEQDVNSQVGGAMCLAAAIDAAPNPE-VEQLRKL  179 (595)
Q Consensus       140 PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d~~-~~~L~~L  179 (595)
                      -.++.|....|.+|..+.|.||--+|-+.++.. ...|..|
T Consensus       589 ~tvelLs~shN~hVR~g~AvaLGiacag~G~~~a~diL~~L  629 (926)
T COG5116         589 GTVELLSESHNFHVRAGVAVALGIACAGTGDKVATDILEAL  629 (926)
T ss_pred             HHHHHhhhccchhhhhhhHHHhhhhhcCCccHHHHHHHHHH
Confidence            566666556789999999999999988866533 2344443

>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=85.52  E-value=28  Score=37.53  Aligned_cols=138  Identities=15%  Similarity=0.078  Sum_probs=75.0

Q ss_pred             HHHhcCCCchHHHHHHHHHHHHHhh----------ccCchhHHHHHHHHHHHHHHhhcccCcCcHHhHHHHHHHhc----
Q 046417          163 AAIDAAPNPEVEQLRKLLPRLGKAV----------RIEGFKAKAAVLGVIGSVVRVGGARSKGVLDWLVPCLVEFL----  228 (595)
Q Consensus       163 aviE~a~d~~~~~L~~Ll~rL~klL----------~~~~~kaK~alLsAIgSlA~a~g~~~~~yl~~lmp~L~e~L----  228 (595)
                      ++..+-.-.+.||++.|||-++.+|          ++.++-+|-.+.+.++-+.    ..|...+..+-|.+...+    
T Consensus       262 sLL~N~~iFvdPY~hqlmPSilTcliakklg~~p~dhe~~alRd~AA~ll~yV~----~~F~~~YktLkPRvtrTllKaf  337 (450)
T COG5095         262 SLLKNKYIFVDPYLHQLMPSILTCLIAKKLGNVPDDHEHYALRDVAADLLKYVF----SNFSSSYKTLKPRVTRTLLKAF  337 (450)
T ss_pred             HHhcCCceeecHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHH----hhhhHhhhhhchHHHHHHHHHH
Confidence            3444434445699999999998877          2334434433333333332    334444555555554433    


Q ss_pred             -c-CCCHHHHHHHHHHHHHHHHHh-----HHhHHHHHHHHHHHHH---hccCCchHHHHHHHHHHHHHhHhcCCCCCCCC
Q 046417          229 -C-CDDWATRKAAAEVLGKVAVFD-----KDLATEYKRSCLAALE---TRRFDKVKIVRETMNRSLEMWKEVPGVCEEVS  298 (595)
Q Consensus       229 -~-~dDW~~RkaAaEaLgsIA~av-----ge~f~py~~~~I~~Le---~crfDKVK~VRda~~~aL~~~K~i~~~~~~~~  298 (595)
                       . ..-..+--.|+-+|..+...+     +..+.-|...+-+-|+   +-..|.-..|=|++..||-.++.-.-.++-+.
T Consensus       338 LD~~k~~sT~YGalkgls~l~ke~ir~~i~pn~~~y~rlv~ktle~~~e~~~~e~n~~vd~l~dalliL~~d~Lpnqr~~  417 (450)
T COG5095         338 LDREKTESTQYGALKGLSILSKEVIRTVIKPNADYYVRLVNKTLEKGNEEEIYENNRVVDLLKDALLILQSDGLPNQRTL  417 (450)
T ss_pred             HhcccccchhhhhhhhhhhhchhheeeeeccchHHHHHHHHHHHhccchhhcccchHHHHHHHHHHHHHhccCCCCccCC
Confidence             2 223445566777887775533     3223333333322232   22233345677888999988887544445666


Q ss_pred             CCCCCC
Q 046417          299 SPSPSK  304 (595)
Q Consensus       299 ~p~~s~  304 (595)
                      +|..++
T Consensus       418 ~~n~~~  423 (450)
T COG5095         418 PPNASG  423 (450)
T ss_pred             CCcHHH
Confidence            665554

>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]

Probab=85.51  E-value=39  Score=36.91  Aligned_cols=196  Identities=14%  Similarity=0.056  Sum_probs=102.3

Q ss_pred             CCcCc-HHHHHHhhhhcCCCCChHHHHHHHHHHHHHH------HHccccchhhHHHHHHHHHhhccCCChhHHHHHHHHH
Q 046417           50 LTQDS-FSSFLNCLQTTDSSSKSPVRKQCVNLLTLLS------RSHGDSLSPHLSKMISTVSCRLRDPDSSVRSACVAAT  122 (595)
Q Consensus        50 L~~~~-lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lA------Eg~gd~I~PhLpkIL~~IvrrLkD~ds~VR~Ac~~aL  122 (595)
                      ++++. |..+-+.|.-+  +.+|..+-.++.-+|-+-      ...++.+..-++..+.-...-+.-.|+.-..|+.++|
T Consensus       251 laQeglIdlicnIIsGa--dsdPfekfralmgfgkffgkeaimdvseeaicealiiaidgsfEmiEmnDpdaieaAiDal  328 (524)
T KOG4413|consen  251 LAQEGLIDLICNIISGA--DSDPFEKFRALMGFGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPDAIEAAIDAL  328 (524)
T ss_pred             cchhhHHHHHHHHhhCC--CCCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchHHHHHHHHH
Confidence            45555 44444444433  345665554555544332      1122344444444444444555567778899999999


Q ss_pred             HHhhhhhcCCcch-hccHHHHHHHh---hcCChh-HHHHHHHHHHHHHhcCCCch--------HHHHHH-----------
Q 046417          123 TAMSLNITKPSFS-VLSKPLIELIL---VEQDVN-SQVGGAMCLAAAIDAAPNPE--------VEQLRK-----------  178 (595)
Q Consensus       123 g~LA~~l~~~~~~-~~l~PLi~aLl---~d~nk~-VQ~~AA~cLaaviE~a~d~~--------~~~L~~-----------  178 (595)
                      |+|.....-.... ..-+|-++.|+   .+++++ -|.++.-||+++--......        ...+..           
T Consensus       329 GilGSnteGadlllkTgppaaehllarafdqnahakqeaaihaLaaIagelrlkpeqitDgkaeerlrclifdaaaqstk  408 (524)
T KOG4413|consen  329 GILGSNTEGADLLLKTGPPAAEHLLARAFDQNAHAKQEAAIHALAAIAGELRLKPEQITDGKAEERLRCLIFDAAAQSTK  408 (524)
T ss_pred             HhccCCcchhHHHhccCChHHHHHHHHHhcccccchHHHHHHHHHHhhccccCChhhccccHHHHHHHHHHHHHHhhccC
Confidence            9999765311100 12233444432   367766 58889999998765432111        111211           


Q ss_pred             --HHHHHHHhhccCchhHHHHHHHHHHHHHHhhcccCcCcHHhHH---HHHHHhccCCCHHHHHHHHHHHHHHHHHhHHh
Q 046417          179 --LLPRLGKAVRIEGFKAKAAVLGVIGSVVRVGGARSKGVLDWLV---PCLVEFLCCDDWATRKAAAEVLGKVAVFDKDL  253 (595)
Q Consensus       179 --Ll~rL~klL~~~~~kaK~alLsAIgSlA~a~g~~~~~yl~~lm---p~L~e~L~~dDW~~RkaAaEaLgsIA~avge~  253 (595)
                        =+.-|...+..+....+-+.+....+|+.      .|+....|   |-++++..|-.-..-|+|-|+=+....++.+.
T Consensus       409 ldPleLFlgilqQpfpEihcAalktfTAiaa------qPWalkeifakeefieiVtDastEhaKaakdAkYeccKAiaea  482 (524)
T KOG4413|consen  409 LDPLELFLGILQQPFPEIHCAALKTFTAIAA------QPWALKEIFAKEEFIEIVTDASTEHAKAAKDAKYECCKAIAEA  482 (524)
T ss_pred             CChHHHHHHHHcCCChhhHHHHHHHHHHHHc------CcHHHHHHhcCccceeeecccchhhHHHHHHHHHHHHHHHHHH
Confidence              11234455566677777777776666652      23221111   22334445555555677777666665555443

>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []

Probab=85.50  E-value=5.3  Score=39.21  Aligned_cols=97  Identities=14%  Similarity=0.204  Sum_probs=70.3

Q ss_pred             ccchhhHHHHHHHHHhhccC-CC-----------------hhHHHHHHHHHHHhhhhhcCCcch-hccHHHHHHHhhcCC
Q 046417           90 DSLSPHLSKMISTVSCRLRD-PD-----------------SSVRSACVAATTAMSLNITKPSFS-VLSKPLIELILVEQD  150 (595)
Q Consensus        90 d~I~PhLpkIL~~IvrrLkD-~d-----------------s~VR~Ac~~aLg~LA~~l~~~~~~-~~l~PLi~aLl~d~n  150 (595)
                      +.|.|||+.|+|.+..-++= ++                 -.+|.+|-++|-.+-+.+...-.. .|+.-+..+| .| +
T Consensus         1 ~li~~~L~~llP~ly~et~v~~elir~V~mGPFKh~vDDGLelRK~ayE~lytlLd~~~~~~~~~~~~~~v~~GL-~D-~   78 (169)
T PF08623_consen    1 DLIRPHLDQLLPNLYAETKVKPELIREVDMGPFKHKVDDGLELRKAAYECLYTLLDTCLSRIDISEFLDRVEAGL-KD-E   78 (169)
T ss_dssp             GGTTTTHHHHHHHHHHTTS--STTEEEEEETTCEEEEEGGGHHHHHHHHHHHHHHHSTCSSS-HHHHHHHHHHTT-SS--
T ss_pred             CchHHHHHHHHHHHHHHhccCHHHheeeecCCceeeecCcHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHhhc-CC-c
Confidence            35789999999999966543 21                 458999999998887765432111 2555566666 56 7


Q ss_pred             hhHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhc
Q 046417          151 VNSQVGGAMCLAAAIDAAPNPEVEQLRKLLPRLGKAVR  188 (595)
Q Consensus       151 k~VQ~~AA~cLaaviE~a~d~~~~~L~~Ll~rL~klL~  188 (595)
                      ..++.-++.-|.+++...+..+...|..|++.|-+.|+
T Consensus        79 ~DIk~L~~~~l~kl~~~~p~~v~~~Ld~l~~~l~~~L~  116 (169)
T PF08623_consen   79 HDIKMLCHLMLSKLAQLAPEEVLQRLDSLVEPLRKTLS  116 (169)
T ss_dssp             HHHHHHHHHHHHHHHHS-HHHHHHCCTTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHhh
Confidence            77898899999999998887777778888888888774

; PDB: 4A0C_A 1U6G_C.

>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]

Probab=85.49  E-value=11  Score=46.76  Aligned_cols=185  Identities=16%  Similarity=0.115  Sum_probs=122.9

Q ss_pred             HHHhhhcCCCCh-------HHHHHHHHHHHHHhCCcCcHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccchhhH
Q 046417           24 ITCLNKLADRDT-------LPVATAELESIARTLTQDSFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPHL   96 (595)
Q Consensus        24 l~~L~KL~DrDT-------~r~A~~~LD~lA~~L~~~~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~PhL   96 (595)
                      .-+|++++|-=+       +..-++.|..+.+++....+...+.++......+.|..|-.+++.+-......-|.+...+
T Consensus       127 v~~Ldrf~dfisd~vvapVre~caq~L~~~l~~~~~s~~~~~~~il~q~~~q~~w~ir~Ggll~iky~~air~d~l~~~~  206 (1549)
T KOG0392|consen  127 VLALDRFGDFISDNVVAPVREACAQALGAYLKHMDESLIKETLDILLQMLRQPNWEIRHGGLLGIKYNVAIRQDLLFQLL  206 (1549)
T ss_pred             HHHHHHhcccccccchhhhHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHcCcchhheechHHHHHHHHHHHHHHHHHHH
Confidence            345677776432       3345678999999998888888888888887777899999988888777778889999999


Q ss_pred             HHHHHHHHhhccCCChhHHHHHHHHHHHhhhhhcCCc--ch-hccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCCCc-h
Q 046417           97 SKMISTVSCRLRDPDSSVRSACVAATTAMSLNITKPS--FS-VLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNP-E  172 (595)
Q Consensus        97 pkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~~~~--~~-~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d~-~  172 (595)
                      +.++.+++..|.|++-.||..++.++...+....+..  .+ .++.-+...|.. -+- .-.+.+.-...+.+-..+. .
T Consensus       207 ~~vl~~~i~~L~ds~ddv~~~aa~~l~~~~s~~v~l~~~~i~~lv~~l~~~l~~-ldd-l~~s~~si~~ll~~l~~~~ev  284 (1549)
T KOG0392|consen  207 NLVLDFVIEGLEDSDDDVRSVAAQFLVPAPSIQVKLMVQKIAKLVHTLWSFLLE-LDD-LSSSTASIMHLLDELCIENEV  284 (1549)
T ss_pred             HHHHHHHHhhhhhcchHHHHHHHHHhhhhhHHHHhhhHhHHHHHHHHHHHHHHH-hhh-cchhhHHHHHHHHHHhhhHHH
Confidence            9999999999999999999999988877776553211  11 144444444432 111 1111111111111111111 1


Q ss_pred             HH-----HH-HHHHHHHHHhhccCchhHHHHHHHHHHHHHHhhc
Q 046417          173 VE-----QL-RKLLPRLGKAVRIEGFKAKAAVLGVIGSVVRVGG  210 (595)
Q Consensus       173 ~~-----~L-~~Ll~rL~klL~~~~~kaK~alLsAIgSlA~a~g  210 (595)
                      ..     -+ ..|.|++.-.+++.-..++.++++.+..+-.+..
T Consensus       285 l~l~~~~n~~~~Lvp~~~p~l~~~i~sv~~a~l~~l~~lle~~~  328 (1549)
T KOG0392|consen  285 LDLFEQQNLEVGLVPRLWPFLRHTISSVRRAALETLAMLLEADD  328 (1549)
T ss_pred             HHHHHHhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            11     11 2577888888888877888888887777766553

>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=85.43  E-value=43  Score=35.30  Aligned_cols=148  Identities=16%  Similarity=0.186  Sum_probs=79.7

Q ss_pred             ccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhcc----CchhHHHHHHHHHHHHHHhhccc
Q 046417          137 LSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNPEVEQLRKLLPRLGKAVRI----EGFKAKAAVLGVIGSVVRVGGAR  212 (595)
Q Consensus       137 ~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d~~~~~L~~Ll~rL~klL~~----~~~kaK~alLsAIgSlA~a~g~~  212 (595)
                      .+.|++..| +.+|..++..|+..|+.++...+.........+++.++..|.+    +.......++.+++.+...-.  
T Consensus       106 ~~~~fl~ll-~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~--  182 (312)
T PF03224_consen  106 PYSPFLKLL-DRNDSFIQLKAAFILTSLLSQGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKE--  182 (312)
T ss_dssp             -HHHHHHH--S-SSHHHHHHHHHHHHHHHTSTTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHH--
T ss_pred             hHHHHHHHh-cCCCHHHHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcch--
Confidence            567888844 7789999999999999999886655544345666666666654    333344555666666654221  


Q ss_pred             CcCcH--HhHHHHHHHhcc-------CCCHHHHHHHHHHHHHHH---HHhHHhHHH-HHHHHHHHHHhccCCchHHHHHH
Q 046417          213 SKGVL--DWLVPCLVEFLC-------CDDWATRKAAAEVLGKVA---VFDKDLATE-YKRSCLAALETRRFDKVKIVRET  279 (595)
Q Consensus       213 ~~~yl--~~lmp~L~e~L~-------~dDW~~RkaAaEaLgsIA---~avge~f~p-y~~~~I~~Le~crfDKVK~VRda  279 (595)
                      +...|  ...++.|.+.+.       ...-++--.++-|+=-+.   .+.++.... ..+..+.++..+.  |-|.||=+
T Consensus       183 ~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~L~~i~~~~~--KEKvvRv~  260 (312)
T PF03224_consen  183 YRQVFWKSNGVSPLFDILRKQATNSNSSGIQLQYQALLCLWLLSFEPEIAEELNKKYLIPLLADILKDSI--KEKVVRVS  260 (312)
T ss_dssp             HHHHHHTHHHHHHHHHHHH---------HHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHH----SHHHHHHH
T ss_pred             hHHHHHhcCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHhcCHHHHHHHhccchHHHHHHHHHhcc--cchHHHHH
Confidence            11111  445666666661       234555555555544331   122222121 2455666777773  77888876


Q ss_pred             HHHHHHHhHhcCCC
Q 046417          280 MNRSLEMWKEVPGV  293 (595)
Q Consensus       280 ~~~aL~~~K~i~~~  293 (595)
                      +    ..++.+-..
T Consensus       261 l----a~l~Nl~~~  270 (312)
T PF03224_consen  261 L----AILRNLLSK  270 (312)
T ss_dssp             H----HHHHHTTSS
T ss_pred             H----HHHHHHHhc
Confidence            4    455555533

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []

Probab=85.24  E-value=25  Score=40.36  Aligned_cols=161  Identities=18%  Similarity=0.136  Sum_probs=78.9

Q ss_pred             HHHHHHHHHHHHHHHccccchhhHHHHHHHHHhhccCCChhHHHHHHHHHHHhhhhhcCCcchhccHHHHHHHhhcCChh
Q 046417           73 VRKQCVNLLTLLSRSHGDSLSPHLSKMISTVSCRLRDPDSSVRSACVAATTAMSLNITKPSFSVLSKPLIELILVEQDVN  152 (595)
Q Consensus        73 vRKaaI~lLG~lAEg~gd~I~PhLpkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~~~~~~~~l~PLi~aLl~d~nk~  152 (595)
                      ..+.....|..|.+.....=...|..++..+...-  .....|..-.++|++.+..-+       +.-+.+.+. . ++.
T Consensus       341 ~~~~~~~~f~~Lv~~lr~l~~~~L~~l~~~~~~~~--~~~~~r~~~lDal~~aGT~~a-------v~~i~~~I~-~-~~~  409 (618)
T PF01347_consen  341 VSKETLSKFSRLVRLLRTLSYEDLEELYKQLKSKS--KKEQARKIFLDALPQAGTNPA-------VKFIKDLIK-S-KKL  409 (618)
T ss_dssp             --TTHHHHHHHHHHHHTTS-HHHHHHHHHHHTTS-----HHHHHHHHHHHHHH-SHHH-------HHHHHHHHH-T-T-S
T ss_pred             cchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhc--cHHHHHHHHHHHHHHcCCHHH-------HHHHHHHHH-c-CCC
Confidence            34444555666666666555555555554333222  256678888888887765331       223334442 2 222


Q ss_pred             HHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhcc----CchhHHHHHHHHHHHHHHhhccc----------CcC---
Q 046417          153 SQVGGAMCLAAAIDAAPNPEVEQLRKLLPRLGKAVRI----EGFKAKAAVLGVIGSVVRVGGAR----------SKG---  215 (595)
Q Consensus       153 VQ~~AA~cLaaviE~a~d~~~~~L~~Ll~rL~klL~~----~~~kaK~alLsAIgSlA~a~g~~----------~~~---  215 (595)
                      -..-|+..|..+.-....+..++|..    +..+++.    +...++.+++=++|+++.-....          ...   
T Consensus       410 ~~~ea~~~l~~l~~~~~~Pt~e~l~~----l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~  485 (618)
T PF01347_consen  410 TDDEAAQLLASLPFHVRRPTEELLKE----LFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIE  485 (618)
T ss_dssp             -HHHHHHHHHHHHHT-----HHHHHH----HHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----------SS--G
T ss_pred             CHHHHHHHHHHHHhhcCCCCHHHHHH----HHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccccccccchhhHH
Confidence            22334444555555443433344443    3333332    34457777777888888633211          233   


Q ss_pred             -cHHhHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Q 046417          216 -VLDWLVPCLVEFLCCDDWATRKAAAEVLGKVAV  248 (595)
Q Consensus       216 -yl~~lmp~L~e~L~~dDW~~RkaAaEaLgsIA~  248 (595)
                       |.+.+...|.+.....|-..+..++-+||-++.
T Consensus       486 ~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~  519 (618)
T PF01347_consen  486 KYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGH  519 (618)
T ss_dssp             GGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-
T ss_pred             HHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCC
Confidence             444444444444445666788888999888753

Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.

>KOG1949 consensus Uncharacterized conserved protein [Function unknown]

Probab=84.79  E-value=41  Score=39.96  Aligned_cols=144  Identities=18%  Similarity=0.201  Sum_probs=94.5

Q ss_pred             HhhhhcCCCCChHHHHHHHHHHHHHHHHcc----cc----chhhHHHHHHHHHhhccCCChhHHHHHHHHHHHhhhhh--
Q 046417           60 NCLQTTDSSSKSPVRKQCVNLLTLLSRSHG----DS----LSPHLSKMISTVSCRLRDPDSSVRSACVAATTAMSLNI--  129 (595)
Q Consensus        60 ~~L~d~~ss~kp~vRKaaI~lLG~lAEg~g----d~----I~PhLpkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l--  129 (595)
                      ++|.-...-.++.+|-.|..+|   .+.++    |.    +-.-|.+=.-.+...|.|+=|.||.-+...+..+-...  
T Consensus       177 p~l~R~L~a~Ns~VrsnAa~lf---~~~fP~~dpd~~~e~mD~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~fWe  253 (1005)
T KOG1949|consen  177 PILWRGLKARNSEVRSNAALLF---VEAFPIRDPDLHAEEMDSIIQKQFEELYSLLEDPYPMVRSTAILGVCKITSKFWE  253 (1005)
T ss_pred             HHHHHhhccCchhhhhhHHHHH---HHhccCCCCCccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHH
Confidence            4555556667889999988884   45553    33    33344555568889999999999999988877666322  


Q ss_pred             cCCcch--hccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHH
Q 046417          130 TKPSFS--VLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNPEVEQLRKLLPRLGKAVRIEGFKAKAAVLGVIGSVVR  207 (595)
Q Consensus       130 ~~~~~~--~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d~~~~~L~~Ll~rL~klL~~~~~kaK~alLsAIgSlA~  207 (595)
                      .=++.+  .++.-+++.|..|.-..|..+..-||-.+..+  ..-.+.|+.++|++-.+|.++.-++|.|.++.|.-|-.
T Consensus       254 ~iP~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~n--p~sh~~le~~Lpal~~~l~D~se~VRvA~vd~ll~ik~  331 (1005)
T KOG1949|consen  254 MIPPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDN--PLSHPLLEQLLPALRYSLHDNSEKVRVAFVDMLLKIKA  331 (1005)
T ss_pred             HcCHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcC--ccchhHHHHHHHhcchhhhccchhHHHHHHHHHHHHHh
Confidence            112222  15555666663333333443444444444432  22357899999999999999999999999988876655


Q ss_pred             h
Q 046417          208 V  208 (595)
Q Consensus       208 a  208 (595)
                      +
T Consensus       332 v  332 (1005)
T KOG1949|consen  332 V  332 (1005)
T ss_pred             h
Confidence            4

>PF04510 DUF577: Family of unknown function (DUF577); InterPro: IPR007598 This is a family of Arabidopsis thaliana (Mouse-ear cress) proteins

Probab=84.33  E-value=7.3  Score=38.38  Aligned_cols=88  Identities=18%  Similarity=0.382  Sum_probs=63.0

Q ss_pred             HHHHHHHHHhhhcCCCChHHHHHHHHHHHHHh-------CCcCcHHHHHHhhhhcCCCCChHHHHHHHHHHHHHH-HHcc
Q 046417           18 DLKQRVITCLNKLADRDTLPVATAELESIART-------LTQDSFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLS-RSHG   89 (595)
Q Consensus        18 ~lk~rvl~~L~KL~DrDT~r~A~~~LD~lA~~-------L~~~~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lA-Eg~g   89 (595)
                      ++|--++.||+.=   +|..+...-|-.++..       ++.+.-+-+.+||.... ..++   +.|+..|..+. -..+
T Consensus         3 eikplLIsCL~~q---~~k~s~~KiL~~iVs~Va~~v~~~~~~~W~eL~d~Ils~~-~~e~---~kA~~IF~~L~~~l~~   75 (174)
T PF04510_consen    3 EIKPLLISCLTMQ---ETKESDFKILRRIVSHVAYEVFDLQEGGWDELSDCILSLS-ENEP---VKAFHIFICLPMPLYG   75 (174)
T ss_pred             chHHHHHHHHHhh---cccHhHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHhh-ccch---HHHHHHHHhCCchhhh
Confidence            6888999999984   3444445555444443       24444667778887643 2223   46777777777 7789


Q ss_pred             ccchhhHHHHHHHHHhhccCCCh
Q 046417           90 DSLSPHLSKMISTVSCRLRDPDS  112 (595)
Q Consensus        90 d~I~PhLpkIL~~IvrrLkD~ds  112 (595)
                      +++.|+|..+++-+.++|.+|..
T Consensus        76 efl~~~~~~L~~~~~~~L~~p~~   98 (174)
T PF04510_consen   76 EFLIPFMENLLPEISKVLLPPEE   98 (174)
T ss_pred             hHHHHHHHHHHHHHHHHcCCchh
Confidence            99999999999999999999965

Many of these members contain a repeated region.

>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]

Probab=84.03  E-value=16  Score=41.41  Aligned_cols=234  Identities=17%  Similarity=0.073  Sum_probs=136.1

Q ss_pred             HHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccchhhHHHHHHHHHhhccCCChhHHHHHHHHHHHhhhhhc----
Q 046417           55 FSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPHLSKMISTVSCRLRDPDSSVRSACVAATTAMSLNIT----  130 (595)
Q Consensus        55 lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~PhLpkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~----  130 (595)
                      +...+.|+..+.  ..+++|-+|+-.|..+|...+ .+.-|+-++...|...+-|+++.|..-...-|-.+...++    
T Consensus       255 ~~~~~~~~~~~~--~ps~~rle~~qvl~~~a~~~~-~~~~~~~~l~RvI~~~~~~~~p~~~l~~a~ll~~lg~~lv~~~~  331 (728)
T KOG4535|consen  255 GSDAGSAAGSTY--EPSPMRLEALQVLTLLARYFS-MTQAYLMELGRVICKCMGEADPSIQLHGAKLLEELGTGLIQQYK  331 (728)
T ss_pred             hhhHHhhhcCcc--CCchhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHccCCCCChHHHHHHHHHHHHHHHHHhhhcC
Confidence            566777776653  236899999999999998775 3456888899999999999999985544444444443332    


Q ss_pred             -CC--------cch--hccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHH-hhccCchhHHHHH
Q 046417          131 -KP--------SFS--VLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNPEVEQLRKLLPRLGK-AVRIEGFKAKAAV  198 (595)
Q Consensus       131 -~~--------~~~--~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d~~~~~L~~Ll~rL~k-lL~~~~~kaK~al  198 (595)
                       +.        ++-  ..++|+-.++...-....|.++|-++-.+.-..-+....--+..++.|.. +=++...-++.++
T Consensus       332 P~~~k~~~q~~~fw~~~l~~p~~~~~YDs~~~Tl~~s~Cdals~i~~~~f~~lpn~~~T~~~~Fl~GC~d~~~~lv~~aA  411 (728)
T KOG4535|consen  332 PDSTKAPDQRAPFWTMMLNGPLPRALYDSEHPTLQASACDALSSILPEAFSNLPNDRQTLCITFLLGCNDSKNRLVKAAA  411 (728)
T ss_pred             CCcccchhhhccHHHHHccCCChhhhhhhcCCCchhHHHHHHhhcCchhhcCCCCcchhhhHHHHhcccchHHHHHHHHH
Confidence             11        111  24455555554444567788888887776544211111111233333321 2244455566665


Q ss_pred             HHHHHHHHHhhcc-cCcCcHHhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhHH---h---HHH-----HHHHHHHHHH
Q 046417          199 LGVIGSVVRVGGA-RSKGVLDWLVPCLVEFLCCDDWATRKAAAEVLGKVAVFDKD---L---ATE-----YKRSCLAALE  266 (595)
Q Consensus       199 LsAIgSlA~a~g~-~~~~yl~~lmp~L~e~L~~dDW~~RkaAaEaLgsIA~avge---~---f~p-----y~~~~I~~Le  266 (595)
                      +.+.+-.+---+. --..+.......+...+.|.....|.-|+=++|-|..++-.   .   +..     .+...+..-.
T Consensus       412 ~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg~ll~~~~~~A~  491 (728)
T KOG4535|consen  412 SRALGVYVLHPCLRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSGLLLLKMLRSAI  491 (728)
T ss_pred             HhhceeEEeccchhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHHHHHHHHHHHHH
Confidence            5444322210011 01233444555566666777889999999999999776521   1   222     2233334434


Q ss_pred             hccCCchHHHHHHHHHHHHHhHhcCC
Q 046417          267 TRRFDKVKIVRETMNRSLEMWKEVPG  292 (595)
Q Consensus       267 ~crfDKVK~VRda~~~aL~~~K~i~~  292 (595)
                      .|--||- -||+.+.+||...-|+-.
T Consensus       492 ~~~Ad~d-kV~~navraLgnllQvlq  516 (728)
T KOG4535|consen  492 EASADKD-KVKSNAVRALGNLLQFLQ  516 (728)
T ss_pred             Hhhhhhh-hhhhHHHHHHhhHHHHHH
Confidence            4444544 378888888887777654

>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]

Probab=84.00  E-value=58  Score=38.23  Aligned_cols=144  Identities=17%  Similarity=0.191  Sum_probs=95.4

Q ss_pred             HHHHHHhhhcCCCChHHHHHHHHHHHHHhC-------C-cCcHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccc
Q 046417           21 QRVITCLNKLADRDTLPVATAELESIARTL-------T-QDSFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSL   92 (595)
Q Consensus        21 ~rvl~~L~KL~DrDT~r~A~~~LD~lA~~L-------~-~~~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I   92 (595)
                      .-++.++..+.|-|-.+.|...|..+++..       . .+...++++.+.    .+...+...++-++-.++=-+++.=
T Consensus       379 ~~~l~~~~~~kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~----dp~~~i~~~~lgai~NlVmefs~~k  454 (678)
T KOG1293|consen  379 ESHLMCLPPIKDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLM----DPEIMIMGITLGAICNLVMEFSNLK  454 (678)
T ss_pred             HHHHccccccccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhh----CcchhHHHHHHHHHHHHHhhcccHH
Confidence            345566777789888888888887777653       2 334777777773    2445666665555444444444322


Q ss_pred             hhhHH-HHHHHHHhhccCCChhHHHHHHHHHHHhhhhhcC----CcchhccHHHHHHHhhcCChhHHHHHHHHHHHHHhc
Q 046417           93 SPHLS-KMISTVSCRLRDPDSSVRSACVAATTAMSLNITK----PSFSVLSKPLIELILVEQDVNSQVGGAMCLAAAIDA  167 (595)
Q Consensus        93 ~PhLp-kIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~~----~~~~~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~  167 (595)
                      ..+|. ..+-.+..-+.|+++.+|..+.|+|-.+.-..-.    +....+...++..+.+|.+..||+.+..-|..++-+
T Consensus       455 skfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~  534 (678)
T KOG1293|consen  455 SKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCN  534 (678)
T ss_pred             HHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcC
Confidence            22222 4567888899999999999999999877743311    111125566666666889999999988888887765


Q ss_pred             C
Q 046417          168 A  168 (595)
Q Consensus       168 a  168 (595)
                      .
T Consensus       535 ~  535 (678)
T KOG1293|consen  535 S  535 (678)
T ss_pred             c
Confidence            3

>PF05804 KAP: Kinesin-associated protein (KAP)

Probab=83.74  E-value=86  Score=37.45  Aligned_cols=239  Identities=17%  Similarity=0.150  Sum_probs=115.3

Q ss_pred             CCChHHHHHHHHHHHHHh------CC-cCcHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHcc--ccch--hhHHHHH
Q 046417           32 DRDTLPVATAELESIART------LT-QDSFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHG--DSLS--PHLSKMI  100 (595)
Q Consensus        32 DrDT~r~A~~~LD~lA~~------L~-~~~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~g--d~I~--PhLpkIL  100 (595)
                      |.+.+.+++..|-.|+..      +. .+.+|.++.+|...   ++..+..+.+.++-.+|-...  +.|.  .-|+.+|
T Consensus       383 d~~~~~val~iLy~LS~dd~~r~~f~~TdcIp~L~~~Ll~~---~~~~v~~eliaL~iNLa~~~rnaqlm~~g~gL~~L~  459 (708)
T PF05804_consen  383 DPNFREVALKILYNLSMDDEARSMFAYTDCIPQLMQMLLEN---SEEEVQLELIALLINLALNKRNAQLMCEGNGLQSLM  459 (708)
T ss_pred             CCchHHHHHHHHHHhccCHhhHHHHhhcchHHHHHHHHHhC---CCccccHHHHHHHHHHhcCHHHHHHHHhcCcHHHHH
Confidence            444555666666666542      22 23477777777663   334445555555444433221  2221  1133333


Q ss_pred             HHHHhhccCCChh----HHHHHHHHHHHhhhhhcCCcchhccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCCCchHHHH
Q 046417          101 STVSCRLRDPDSS----VRSACVAATTAMSLNITKPSFSVLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNPEVEQL  176 (595)
Q Consensus       101 ~~IvrrLkD~ds~----VR~Ac~~aLg~LA~~l~~~~~~~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d~~~~~L  176 (595)
                      ...   ++-.|+.    ||.++-+. |.     .+..+..|+.||+..+....+.....-...+|+.+--. +..-..++
T Consensus       460 ~ra---~~~~D~lLlKlIRNiS~h~-~~-----~k~~f~~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~-~ld~~~ll  529 (708)
T PF05804_consen  460 KRA---LKTRDPLLLKLIRNISQHD-GP-----LKELFVDFIGDLAKIVSSGDSEEFVVECLGILANLTIP-DLDWAQLL  529 (708)
T ss_pred             HHH---HhcccHHHHHHHHHHHhcC-ch-----HHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHhcccC-CcCHHHHH
Confidence            322   3333433    24333221 00     00123348889998874333333333333334443211 11224566


Q ss_pred             H--HHHHHHHHhhccCch--hHHHHHHHHHHHHHHhhcc----cCcCcHHhHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Q 046417          177 R--KLLPRLGKAVRIEGF--KAKAAVLGVIGSVVRVGGA----RSKGVLDWLVPCLVEFLCCDDWATRKAAAEVLGKVAV  248 (595)
Q Consensus       177 ~--~Ll~rL~klL~~~~~--kaK~alLsAIgSlA~a~g~----~~~~yl~~lmp~L~e~L~~dDW~~RkaAaEaLgsIA~  248 (595)
                      .  .++|-|.+.|.....  .+-..++-.+|+++.--..    ...+..+.++..|..+-.|++.     .+.++..+-.
T Consensus       530 ~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~d~~~A~lL~~sgli~~Li~LL~~kqeDdE~-----VlQil~~f~~  604 (708)
T PF05804_consen  530 QEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLASDPECAPLLAKSGLIPTLIELLNAKQEDDEI-----VLQILYVFYQ  604 (708)
T ss_pred             HhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHCCHHHHHHHHhCChHHHHHHHHHhhCchHHH-----HHHHHHHHHH
Confidence            5  488888888864422  2333334556666631111    1123333344444333333333     3444444443


Q ss_pred             Hh--HH---hHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHhHh
Q 046417          249 FD--KD---LATEYKRSCLAALETRRFDKVKIVRETMNRSLEMWKE  289 (595)
Q Consensus       249 av--ge---~f~py~~~~I~~Le~crfDKVK~VRda~~~aL~~~K~  289 (595)
                      .+  ++   .+. ....+...|-....||-+.||.....+|...-+
T Consensus       605 ll~h~~tr~~ll-~~~~~~~ylidL~~d~N~~ir~~~d~~Ldii~e  649 (708)
T PF05804_consen  605 LLFHEETREVLL-KETEIPAYLIDLMHDKNAEIRKVCDNALDIIAE  649 (708)
T ss_pred             HHcChHHHHHHH-hccchHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            33  22   222 124466677777789999999999999977554

>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]

Probab=83.61  E-value=33  Score=40.11  Aligned_cols=147  Identities=12%  Similarity=0.170  Sum_probs=102.7

Q ss_pred             HHHHHhhccCCChhHHHHHHHHHHHhhhhh--cCCcch--hccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCCCchHHH
Q 046417          100 ISTVSCRLRDPDSSVRSACVAATTAMSLNI--TKPSFS--VLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNPEVEQ  175 (595)
Q Consensus       100 L~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l--~~~~~~--~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d~~~~~  175 (595)
                      .-+....++  |..++.|+|..+-.+++-+  .+.++.  ....||+..| .+++-.|+..+-.||..+|-.-.+.--.+
T Consensus       381 ~l~~~~~~k--d~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll-~dp~~~i~~~~lgai~NlVmefs~~kskf  457 (678)
T KOG1293|consen  381 HLMCLPPIK--DHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLL-MDPEIMIMGITLGAICNLVMEFSNLKSKF  457 (678)
T ss_pred             HHccccccc--cHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHh-hCcchhHHHHHHHHHHHHHhhcccHHHHH
Confidence            333334444  4558888888887777543  122222  2778999999 68888999999999999886644433334


Q ss_pred             HHH-HHHHHHHhhccCchhHHHHHHHHHHHHHHhhc--ccCcCcHHhHHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Q 046417          176 LRK-LLPRLGKAVRIEGFKAKAAVLGVIGSVVRVGG--ARSKGVLDWLVPCLVEFLCCDDWATRKAAAEVLGKVAVF  249 (595)
Q Consensus       176 L~~-Ll~rL~klL~~~~~kaK~alLsAIgSlA~a~g--~~~~~yl~~lmp~L~e~L~~dDW~~RkaAaEaLgsIA~a  249 (595)
                      +.. .+..+.+++.++.+..|.-.+-++.-+..-..  ..+.+|-+.-+..|..+.+|+||.+...++..|--+...
T Consensus       458 l~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~  534 (678)
T KOG1293|consen  458 LRNNGIDILESMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCN  534 (678)
T ss_pred             HHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcC
Confidence            443 66788888888888888777777776665332  225666677788888999999999988888777666543

>PF05536 Neurochondrin: Neurochondrin

Probab=83.12  E-value=96  Score=35.80  Aligned_cols=194  Identities=15%  Similarity=0.090  Sum_probs=122.6

Q ss_pred             HHHHhhhhcCCCCC-hHHHHHHHHHHHHHHHHcc-ccc--hhhHHHHHHHHHhhccCCCh-hHHHHHHHHHHHhhhhhcC
Q 046417           57 SFLNCLQTTDSSSK-SPVRKQCVNLLTLLSRSHG-DSL--SPHLSKMISTVSCRLRDPDS-SVRSACVAATTAMSLNITK  131 (595)
Q Consensus        57 ~fL~~L~d~~ss~k-p~vRKaaI~lLG~lAEg~g-d~I--~PhLpkIL~~IvrrLkD~ds-~VR~Ac~~aLg~LA~~l~~  131 (595)
                      .||..|..+...+. .......-+++.+++..|. +.+  .|.+-.-||.++..+...+. .+-.=|..+|..++.+=.-
T Consensus        53 ~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~~~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G  132 (543)
T PF05536_consen   53 KFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFCRDPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASSPEG  132 (543)
T ss_pred             hHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHcCChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHh
Confidence            57777766544332 2445555566666777775 223  57788889999999887776 6666677777777732110


Q ss_pred             -Ccch--hccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCCC----chHHHHHHHHHHHHHhhccCchhHHHHHHHHHHH
Q 046417          132 -PSFS--VLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPN----PEVEQLRKLLPRLGKAVRIEGFKAKAAVLGVIGS  204 (595)
Q Consensus       132 -~~~~--~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d----~~~~~L~~Ll~rL~klL~~~~~kaK~alLsAIgS  204 (595)
                       ..+.  .-+..|++++.+  ......-|...|..++-....    .....+..+++.|...+....-..|-.++..++.
T Consensus       133 ~~aLl~~g~v~~L~ei~~~--~~~~~E~Al~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~  210 (543)
T PF05536_consen  133 AKALLESGAVPALCEIIPN--QSFQMEIALNLLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSA  210 (543)
T ss_pred             HHHHHhcCCHHHHHHHHHh--CcchHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHH
Confidence             1111  267889999843  334455555556665554321    1123556777888888866655566677888887


Q ss_pred             HHHhhc------ccCcCcHHhHHHHHHHhccC-CCHHHHHHHHHHHHHHHHHhHH
Q 046417          205 VVRVGG------ARSKGVLDWLVPCLVEFLCC-DDWATRKAAAEVLGKVAVFDKD  252 (595)
Q Consensus       205 lA~a~g------~~~~~yl~~lmp~L~e~L~~-dDW~~RkaAaEaLgsIA~avge  252 (595)
                      +.....      .........+...|...|.+ -.-..|.+|+...+.+..+.|.
T Consensus       211 ~L~~~~~~~~~~~~~~~W~~~l~~gl~~iL~sr~~~~~R~~al~Laa~Ll~~~G~  265 (543)
T PF05536_consen  211 FLPRSPILPLESPPSPKWLSDLRKGLRDILQSRLTPSQRDPALNLAASLLDLLGP  265 (543)
T ss_pred             hcCcCCccccccCChhhhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCh
Confidence            776432      11234556677777777765 3456799999999999998873

>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=82.85  E-value=19  Score=42.56  Aligned_cols=54  Identities=19%  Similarity=0.139  Sum_probs=29.8

Q ss_pred             CCCHHHHHHHHHHHHHHHHHh--HHhHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHhHhcC
Q 046417          230 CDDWATRKAAAEVLGKVAVFD--KDLATEYKRSCLAALETRRFDKVKIVRETMNRSLEMWKEVP  291 (595)
Q Consensus       230 ~dDW~~RkaAaEaLgsIA~av--ge~f~py~~~~I~~Le~crfDKVK~VRda~~~aL~~~K~i~  291 (595)
                      +|---....=+|+|..+|...  .+.+.+|...+..+       -+..||.+ ++||.-|....
T Consensus       326 nDPiYvK~eKleil~~la~~~nl~qvl~El~eYatev-------D~~fvrka-Iraig~~aik~  381 (734)
T KOG1061|consen  326 NDPIYVKLEKLEILIELANDANLAQVLAELKEYATEV-------DVDFVRKA-VRAIGRLAIKA  381 (734)
T ss_pred             CCchhhHHHHHHHHHHHhhHhHHHHHHHHHHHhhhhh-------CHHHHHHH-HHHhhhhhhhh
Confidence            344566777788887777643  35566655543322       24566665 44554444433

>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species

Probab=82.81  E-value=65  Score=33.61  Aligned_cols=129  Identities=16%  Similarity=0.147  Sum_probs=67.0

Q ss_pred             ccccchhhHHHHHHHHHhhc----cCCChhHHHHHHHHHHHhhhhhcCCcchhccHHHHHHHhhcCChhHHHHHHHHHHH
Q 046417           88 HGDSLSPHLSKMISTVSCRL----RDPDSSVRSACVAATTAMSLNITKPSFSVLSKPLIELILVEQDVNSQVGGAMCLAA  163 (595)
Q Consensus        88 ~gd~I~PhLpkIL~~IvrrL----kD~ds~VR~Ac~~aLg~LA~~l~~~~~~~~l~PLi~aLl~d~nk~VQ~~AA~cLaa  163 (595)
                      +.+.+.|+|-++|...+.+.    .|.+....   .+++-.||+.-..    .-+.||+..+..+.+ .+       ..-
T Consensus        28 ~~e~i~P~Ll~~Le~a~~~~~e~~~~~~~~~~---~~a~~LLaq~re~----~A~~~li~l~~~~~~-~~-------~~l   92 (249)
T PF06685_consen   28 QREEITPELLKILEDAIERANELLDDEEYNLH---FYALYLLAQFREE----RALPPLIRLFSQDDD-FL-------EDL   92 (249)
T ss_pred             CHHHhhHHHHHHHHHHHHhHHHhccCcchHHH---HHHHHHHHHHhhh----hhHHHHHHHHcCCcc-hH-------HHH
Confidence            88999999999998877543    22333222   3444444443211    246777777732222 10       011


Q ss_pred             HHhcCCCchHHHHHHHH----HHHHHhhccCch--hHHHHHHHHHHHHHHhhcccCcCcHHhHHHHHHHhccCC
Q 046417          164 AIDAAPNPEVEQLRKLL----PRLGKAVRIEGF--KAKAAVLGVIGSVVRVGGARSKGVLDWLVPCLVEFLCCD  231 (595)
Q Consensus       164 viE~a~d~~~~~L~~Ll----~rL~klL~~~~~--kaK~alLsAIgSlA~a~g~~~~~yl~~lmp~L~e~L~~d  231 (595)
                      +.+...+....++..++    ..|.++++++..  -+|.++++++..++..+...-......+...+..++..+
T Consensus        93 ~GD~~tE~l~~ilasv~~G~~~~L~~li~~~~~~~yvR~aa~~aL~~l~~~~~~~Re~vi~~f~~ll~~~l~~~  166 (249)
T PF06685_consen   93 FGDFITEDLPRILASVGDGDIEPLKELIEDPDADEYVRMAAISALAFLVHEGPISREEVIQYFRELLNYFLERN  166 (249)
T ss_pred             HcchhHhHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhccC
Confidence            11111111222333332    345556666633  389999999999998776653343444444444445433

The function of this family is unknown.

>PF05804 KAP: Kinesin-associated protein (KAP)

Probab=82.62  E-value=9.1  Score=45.38  Aligned_cols=161  Identities=14%  Similarity=0.097  Sum_probs=95.5

Q ss_pred             hccCCChhHHHHHHHHHHHhhhhhcCCcch---hccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCCCchHHHH-HHHHH
Q 046417          106 RLRDPDSSVRSACVAATTAMSLNITKPSFS---VLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNPEVEQL-RKLLP  181 (595)
Q Consensus       106 rLkD~ds~VR~Ac~~aLg~LA~~l~~~~~~---~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d~~~~~L-~~Ll~  181 (595)
                      .++..+..+| +|...|..||+...-..-+   -++.+|+..| ...+..+...+..+|.++.-.-.. -..+. ..+++
T Consensus       258 l~~kQeqLlr-v~~~lLlNLAed~~ve~kM~~~~iV~~Lv~~L-dr~n~ellil~v~fLkkLSi~~EN-K~~m~~~giV~  334 (708)
T PF05804_consen  258 LIRKQEQLLR-VAFYLLLNLAEDPRVELKMVNKGIVSLLVKCL-DRENEELLILAVTFLKKLSIFKEN-KDEMAESGIVE  334 (708)
T ss_pred             HHHHHHHHHH-HHHHHHHHHhcChHHHHHHHhcCCHHHHHHHH-cCCCHHHHHHHHHHHHHHcCCHHH-HHHHHHcCCHH
Confidence            3444455556 6677788888765211011   2888999888 566777888777777776422100 01122 24889


Q ss_pred             HHHHhhccCchhHHHHHHHHHHHHHHhhcccCcCcH-HhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhH--HhHHHH-
Q 046417          182 RLGKAVRIEGFKAKAAVLGVIGSVVRVGGARSKGVL-DWLVPCLVEFLCCDDWATRKAAAEVLGKVAVFDK--DLATEY-  257 (595)
Q Consensus       182 rL~klL~~~~~kaK~alLsAIgSlA~a~g~~~~~yl-~~lmp~L~e~L~~dDW~~RkaAaEaLgsIA~avg--e~f~py-  257 (595)
                      +|.++|.+++..+...++.++..+..-...- ...+ ..++|.|.++|.++++.  ..++-.|+.|.....  ..|. | 
T Consensus       335 kL~kLl~s~~~~l~~~aLrlL~NLSfd~~~R-~~mV~~GlIPkLv~LL~d~~~~--~val~iLy~LS~dd~~r~~f~-~T  410 (708)
T PF05804_consen  335 KLLKLLPSENEDLVNVALRLLFNLSFDPELR-SQMVSLGLIPKLVELLKDPNFR--EVALKILYNLSMDDEARSMFA-YT  410 (708)
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHHhCcCHHHH-HHHHHCCCcHHHHHHhCCCchH--HHHHHHHHHhccCHhhHHHHh-hc
Confidence            9999999888777777777777666422211 0111 23678888898877644  456777777765331  2232 3 


Q ss_pred             --HHHHHHHHHhccCCch
Q 046417          258 --KRSCLAALETRRFDKV  273 (595)
Q Consensus       258 --~~~~I~~Le~crfDKV  273 (595)
                        .+.++..|.++-...+
T Consensus       411 dcIp~L~~~Ll~~~~~~v  428 (708)
T PF05804_consen  411 DCIPQLMQMLLENSEEEV  428 (708)
T ss_pred             chHHHHHHHHHhCCCccc
Confidence              2444555555544444

>KOG2842 consensus Interferon-related protein PC4 like [Cytoskeleton]

Probab=82.52  E-value=39  Score=37.42  Aligned_cols=200  Identities=16%  Similarity=0.072  Sum_probs=111.7

Q ss_pred             hHHHHHHHHHHH--HHHHHccccchhhHHHHHHHHHhhccCCChhHHHHHHHHHHHhhhhhcC---Ccch-hccHHHHHH
Q 046417           71 SPVRKQCVNLLT--LLSRSHGDSLSPHLSKMISTVSCRLRDPDSSVRSACVAATTAMSLNITK---PSFS-VLSKPLIEL  144 (595)
Q Consensus        71 p~vRKaaI~lLG--~lAEg~gd~I~PhLpkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~~---~~~~-~~l~PLi~a  144 (595)
                      .-.|.+++.-+.  ..++-.+++|.+.--.+...+.+-++-|.+.=..++.-.+|.++-.+.-   ..+. .-..|....
T Consensus        74 AktR~~~le~i~lalt~r~l~~fi~e~~~tl~~~~~k~~~k~~sd~q~~a~~~~g~~~vqlg~~q~~ee~~~t~~~~~~l  153 (427)
T KOG2842|consen   74 AKTRQEALEKIYLALTSRHLPEFILENRATLEDLLEKCLNKPKSDEQLLAAALIGLLCVQAGPGQEEEEWTKTLGPFLAL  153 (427)
T ss_pred             hhHHHHHHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhccCcchhhHHHhccchHHHH
Confidence            467777776544  4456678999999889999999999999876544444444555443321   1111 244555555


Q ss_pred             HhhcCChhHHH--HHHHHHHHHHhc-CCCchHHHHHHHH-----HHHHHhhccCchh---HH--HHHHHHHHHHHH--h-
Q 046417          145 ILVEQDVNSQV--GGAMCLAAAIDA-APNPEVEQLRKLL-----PRLGKAVRIEGFK---AK--AAVLGVIGSVVR--V-  208 (595)
Q Consensus       145 Ll~d~nk~VQ~--~AA~cLaaviE~-a~d~~~~~L~~Ll-----~rL~klL~~~~~k---aK--~alLsAIgSlA~--a-  208 (595)
                      ++.++++.++.  .+|.||+..+=. +.+...-+.-.+|     .+.. +.+....-   +.  ..++.++.+-+-  . 
T Consensus       154 i~~d~s~sv~~r~~ca~sl~v~~l~a~~d~~e~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~a~~Lti  232 (427)
T KOG2842|consen  154 ILDDESASIKARSICATSLGTACLIAEADIIELGSFLICLEESFGAVY-LEDDETVVVCACQNLGLLLTCLTAWSLLLTI  232 (427)
T ss_pred             HhhccccchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhh-cccCCCccccccchhHHHHHHHHHHHHHHHc
Confidence            65677777764  444555554433 2333322222223     3333 44333211   11  111122221111  0 


Q ss_pred             hcc-cCcCcHHhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhH----HhHHHHHHHHHHHHHhccCC
Q 046417          209 GGA-RSKGVLDWLVPCLVEFLCCDDWATRKAAAEVLGKVAVFDK----DLATEYKRSCLAALETRRFD  271 (595)
Q Consensus       209 ~g~-~~~~yl~~lmp~L~e~L~~dDW~~RkaAaEaLgsIA~avg----e~f~py~~~~I~~Le~crfD  271 (595)
                      ..+ ........+.|.|..+|..+.-..|.+|.|++..++....    +++-|-++.++..|+....|
T Consensus       233 ~~~~~~~~~~~~~~p~i~~lLs~~~vn~r~aa~et~a~l~e~~q~~~~~f~~~d~e~l~~~lr~latd  300 (427)
T KOG2842|consen  233 CPEALSEQLDAALAPKLPLLLSSERVNERIAAGETLALLFELAQDSEFDFIYPDMEQLLSTLRDLATD  300 (427)
T ss_pred             CccchhhHHHHHhccchHHHhccchhhhhhhhhhhHHHHHHHHhcccccccCCCHHHHHHHHHHHHHh
Confidence            000 1112223366888889999999999999999999887662    35555566666666655444

>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]

Probab=82.27  E-value=83  Score=34.48  Aligned_cols=95  Identities=12%  Similarity=0.162  Sum_probs=74.4

Q ss_pred             ChHHHHHHHHHHHHHhCC-cCcHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHcc-ccchhhH----HHHHHHHHhhc
Q 046417           34 DTLPVATAELESIARTLT-QDSFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHG-DSLSPHL----SKMISTVSCRL  107 (595)
Q Consensus        34 DT~r~A~~~LD~lA~~L~-~~~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~g-d~I~PhL----pkIL~~IvrrL  107 (595)
                      ++.-.-+..|+++-+... ...+|.+++-|+--.-.++..++--+++-+|.+.|-|- +.+..-+    ..|++.|+..+
T Consensus        58 ekttlcVscLERLfkakegahlapnlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcI  137 (524)
T KOG4413|consen   58 EKTTLCVSCLERLFKAKEGAHLAPNLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCI  137 (524)
T ss_pred             chhhhHHHHHHHHHhhccchhhchhhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHH
Confidence            355567888988887654 45588888888877777778899999999999999997 3333222    36788888888


Q ss_pred             cCCChhHHHHHHHHHHHhhhh
Q 046417          108 RDPDSSVRSACVAATTAMSLN  128 (595)
Q Consensus       108 kD~ds~VR~Ac~~aLg~LA~~  128 (595)
                      -..|-.|-.|+.+++.+++..
T Consensus       138 ggeddeVAkAAiesikrialf  158 (524)
T KOG4413|consen  138 GGEDDEVAKAAIESIKRIALF  158 (524)
T ss_pred             cCCcHHHHHHHHHHHHHHHhc
Confidence            889999999999999999853

>KOG1243 consensus Protein kinase [General function prediction only]

Probab=82.25  E-value=4.9  Score=46.90  Aligned_cols=197  Identities=13%  Similarity=0.173  Sum_probs=107.7

Q ss_pred             hHHHHHHHHHHHHHhCCcCc-HHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccchh--hHHHHHHHHHhhccCCC
Q 046417           35 TLPVATAELESIARTLTQDS-FSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSP--HLSKMISTVSCRLRDPD  111 (595)
Q Consensus        35 T~r~A~~~LD~lA~~L~~~~-lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~P--hLpkIL~~IvrrLkD~d  111 (595)
                      -.+-.+.-|=.+++.++.+. -..|+++|...+..++-.+|=--+.-+....    +.+.+  ...+|+|.+..+++|.+
T Consensus       307 a~~~~ltpl~k~~k~ld~~eyq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i----~~Lt~~~~~d~I~phv~~G~~DTn  382 (690)
T KOG1243|consen  307 AASDFLTPLFKLGKDLDEEEYQVRIIPVLLKLFKSPDRQIRLLLLQYIEKYI----DHLTKQILNDQIFPHVALGFLDTN  382 (690)
T ss_pred             cchhhhhHHHHhhhhccccccccchhhhHHHHhcCcchHHHHHHHHhHHHHh----hhcCHHhhcchhHHHHHhhcccCC
Confidence            45556666667777777444 3356666666666666666644433333333    33322  34589999999999999


Q ss_pred             hhHHHHHHHHHHHhhhhhcCCcchh-ccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCCCchHHHHH--HHHHHHHHhhc
Q 046417          112 SSVRSACVAATTAMSLNITKPSFSV-LSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNPEVEQLR--KLLPRLGKAVR  188 (595)
Q Consensus       112 s~VR~Ac~~aLg~LA~~l~~~~~~~-~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d~~~~~L~--~Ll~rL~klL~  188 (595)
                      +.+|..++.++..|+..+....+.. +++ .+.-+..|.....-.---.||-+.-..    +.+...  -|..++.+.++
T Consensus       383 ~~Lre~Tlksm~~La~kL~~~~Ln~Ellr-~~ar~q~d~~~~irtntticlgki~~~----l~~~~R~~vL~~aftralk  457 (690)
T KOG1243|consen  383 ATLREQTLKSMAVLAPKLSKRNLNGELLR-YLARLQPDEHGGIRTNTTICLGKIAPH----LAASVRKRVLASAFTRALK  457 (690)
T ss_pred             HHHHHHHHHHHHHHHhhhchhhhcHHHHH-HHHhhCccccCcccccceeeecccccc----cchhhhccccchhhhhhhc
Confidence            9999999999999998775321111 111 111111121111111112222222111    011112  25677788888


Q ss_pred             cCchhHHHHHHHHHHHHHHhhcccCcCcHHhHHHHHHHhccCCCHHHHHHHHHH
Q 046417          189 IEGFKAKAAVLGVIGSVVRVGGARSKGVLDWLVPCLVEFLCCDDWATRKAAAEV  242 (595)
Q Consensus       189 ~~~~kaK~alLsAIgSlA~a~g~~~~~yl~~lmp~L~e~L~~dDW~~RkaAaEa  242 (595)
                      ++...+|.+.+-++.+.-.--.  .......++|.|.....+++=.+|-.|..+
T Consensus       458 dpf~paR~a~v~~l~at~~~~~--~~~va~kIlp~l~pl~vd~e~~vr~~a~~~  509 (690)
T KOG1243|consen  458 DPFVPARKAGVLALAATQEYFD--QSEVANKILPSLVPLTVDPEKTVRDTAEKA  509 (690)
T ss_pred             CCCCCchhhhhHHHhhcccccc--hhhhhhhccccccccccCcccchhhHHHHH
Confidence            8888887765544443221100  012224577777777777776666655443

>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=82.13  E-value=7.6  Score=47.79  Aligned_cols=142  Identities=16%  Similarity=0.119  Sum_probs=95.4

Q ss_pred             ccHHHHHHHhh----cCChhHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhc-cCchhHHHHHHHHHHHHHHhhcc
Q 046417          137 LSKPLIELILV----EQDVNSQVGGAMCLAAAIDAAPNPEVEQLRKLLPRLGKAVR-IEGFKAKAAVLGVIGSVVRVGGA  211 (595)
Q Consensus       137 ~l~PLi~aLl~----d~nk~VQ~~AA~cLaaviE~a~d~~~~~L~~Ll~rL~klL~-~~~~kaK~alLsAIgSlA~a~g~  211 (595)
                      -|.|++..+..    -+++..|.+|-+||.++.--.    ..+-..=+|-|+..++ +++..+|..++-++|-+|.    
T Consensus       919 ~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iS----a~fces~l~llftimeksp~p~IRsN~VvalgDlav----  990 (1251)
T KOG0414|consen  919 RFAPIVVEGCRNPGLFSDPELQAAATLALGKLMCIS----AEFCESHLPLLFTIMEKSPSPRIRSNLVVALGDLAV----  990 (1251)
T ss_pred             HHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhh----HHHHHHHHHHHHHHHhcCCCceeeecchheccchhh----
Confidence            46666666542    357889999999999987432    2355556677777776 6787888777777776663    


Q ss_pred             cCcCcHHhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHhHhcC
Q 046417          212 RSKGVLDWLVPCLVEFLCCDDWATRKAAAEVLGKVAVFDKDLATEYKRSCLAALETRRFDKVKIVRETMNRSLEMWKEVP  291 (595)
Q Consensus       212 ~~~~yl~~lmp~L~e~L~~dDW~~RkaAaEaLgsIA~avge~f~py~~~~I~~Le~crfDKVK~VRda~~~aL~~~K~i~  291 (595)
                      .|+-+++.--+.|-..|.|++-.+|+.|..+|..+-..-.--...|....-..|+    |-..-||+.+-   +-.|++.
T Consensus       991 ~fpnlie~~T~~Ly~rL~D~~~~vRkta~lvlshLILndmiKVKGql~eMA~cl~----D~~~~IsdlAk---~FF~Els 1063 (1251)
T KOG0414|consen  991 RFPNLIEPWTEHLYRRLRDESPSVRKTALLVLSHLILNDMIKVKGQLSEMALCLE----DPNAEISDLAK---SFFKELS 1063 (1251)
T ss_pred             hcccccchhhHHHHHHhcCccHHHHHHHHHHHHHHHHhhhhHhcccHHHHHHHhc----CCcHHHHHHHH---HHHHHhh
Confidence            3666667677788888899999999999999999966543222222222222344    77777777643   4455555


Q ss_pred             CC
Q 046417          292 GV  293 (595)
Q Consensus       292 ~~  293 (595)
                      ..
T Consensus      1064 ~k 1065 (1251)
T KOG0414|consen 1064 SK 1065 (1251)
T ss_pred             hc
Confidence            33

>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional

Probab=82.10  E-value=95  Score=40.85  Aligned_cols=206  Identities=13%  Similarity=0.127  Sum_probs=120.2

Q ss_pred             HHHHH---HHhCCcCcHHHHHHhhhhcCCCC---ChHHHHHHHHHHHHHHHHccccchhhHHHHHH----HHHhhccCCC
Q 046417           42 ELESI---ARTLTQDSFSSFLNCLQTTDSSS---KSPVRKQCVNLLTLLSRSHGDSLSPHLSKMIS----TVSCRLRDPD  111 (595)
Q Consensus        42 ~LD~l---A~~L~~~~lp~fL~~L~d~~ss~---kp~vRKaaI~lLG~lAEg~gd~I~PhLpkIL~----~IvrrLkD~d  111 (595)
                      .+|.+   ...|+.+.|..|+.+|.+-....   ...-|-.++..|..++..-.+-+.-.+.+|+.    ++++.-.+++
T Consensus      1071 ~idkIF~~S~~L~~eai~~fv~AL~~vS~eEl~~~~~pr~FsLqKLveIa~~Nm~Rirl~W~~iW~~l~~hf~~vg~~~n 1150 (1780)
T PLN03076       1071 EMNRIFTRSQKLNSEAIIDFVKALCKVSMEELRSPSDPRVFSLTKIVEIAHYNMNRIRLVWSSIWHVLSDFFVTIGCSEN 1150 (1780)
T ss_pred             HHHHHHHhcccCCHHHHHHHHHHHHHhhHHHHccCCCCchhHHHHHHHHHHhcccchheehHhHHHHHHHHHHHhcCCcc
Confidence            44554   33577888999999987642111   12347888888888888888777555556444    4455445667


Q ss_pred             hhHHHHHHHHHHHhhhhhcCCc------ch-hccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHH
Q 046417          112 SSVRSACVAATTAMSLNITKPS------FS-VLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNPEVEQLRKLLPRLG  184 (595)
Q Consensus       112 s~VR~Ac~~aLg~LA~~l~~~~------~~-~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d~~~~~L~~Ll~rL~  184 (595)
                      ..|+--|++.|.+++..+.+..      +. .||+|+...|-...+..++....-|+..+++.-..-+..--..+..-|.
T Consensus      1151 ~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~~nIkSGWktIF~VLs 1230 (1780)
T PLN03076       1151 LSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRVNNVKSGWKSMFMVFT 1230 (1780)
T ss_pred             hhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhcCcHHHHHHHH
Confidence            7799999999999997665422      22 3999999888666677889999999999888733222111122333333


Q ss_pred             HhhccCchhHHHHHHHHHHHHHHhh-c-cc--CcCcHHhHHHHHHHhccCC-CHHHHHHHHHHHHHHH
Q 046417          185 KAVRIEGFKAKAAVLGVIGSVVRVG-G-AR--SKGVLDWLVPCLVEFLCCD-DWATRKAAAEVLGKVA  247 (595)
Q Consensus       185 klL~~~~~kaK~alLsAIgSlA~a~-g-~~--~~~yl~~lmp~L~e~L~~d-DW~~RkaAaEaLgsIA  247 (595)
                      .....++-.+-..+.+.+.-|..-. . ..  -...|..++.+|.+|.... +-..=..|++.|-.++
T Consensus      1231 ~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F~DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~ 1298 (1780)
T PLN03076       1231 TAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTTFTDCVNCLIAFTNSRFNKDISLNAIAFLRFCA 1298 (1780)
T ss_pred             HHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHHhCcCcccccHHHHHHHHHHH
Confidence            2333333222233344444333210 1 00  0245667777777776532 2222234455555443

>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=81.60  E-value=69  Score=38.67  Aligned_cols=225  Identities=14%  Similarity=0.165  Sum_probs=116.2

Q ss_pred             hHHHHHHHHHHHHH--------hCCcCcHH----HHHHhhhhcCCC----CChHHHHHHHHHHHHHHHHc---cccchhh
Q 046417           35 TLPVATAELESIAR--------TLTQDSFS----SFLNCLQTTDSS----SKSPVRKQCVNLLTLLSRSH---GDSLSPH   95 (595)
Q Consensus        35 T~r~A~~~LD~lA~--------~L~~~~lp----~fL~~L~d~~ss----~kp~vRKaaI~lLG~lAEg~---gd~I~Ph   95 (595)
                      -+..|+-+++.+-.        .+.++.++    .+|..|..+.+.    .+.+.=|+-+|.++++-+..   +..+.++
T Consensus       514 vhsYAA~aiEkil~vre~~~~~if~~~~iap~~~~ll~nLf~a~s~p~~~EneylmKaImRii~i~~~~i~p~~~~~l~~  593 (960)
T KOG1992|consen  514 VHSYAAIAIEKLLTVRENSNAKIFGAEDIAPFVEILLTNLFKALSLPGKAENEYLMKAIMRIISILQSAIIPHAPELLRQ  593 (960)
T ss_pred             HHHHHHHHHHhccccccCccccccchhhcchHHHHHHHHHHHhccCCcccccHHHHHHHHHHHHhCHHhhhhhhhHHHHH
Confidence            56678888887543        23344444    344444444333    34455666666666655544   3444455


Q ss_pred             HHHHHHHHHhhccCCChhHHHHHHHHHHHhhhhhcCCc------chhccHHHHHHHhhcCChhHHHHH---HHHHHHHHh
Q 046417           96 LSKMISTVSCRLRDPDSSVRSACVAATTAMSLNITKPS------FSVLSKPLIELILVEQDVNSQVGG---AMCLAAAID  166 (595)
Q Consensus        96 LpkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~~~~------~~~~l~PLi~aLl~d~nk~VQ~~A---A~cLaaviE  166 (595)
                      |.+|+..+.|--.  +|..-.=.-+++|.+-...++..      +..-+-|+++.++.+   .+|+--   ..-|+-++|
T Consensus       594 Lteiv~~v~KNPs--~P~fnHYLFEsi~~li~~t~~~~~~~vs~~e~aL~p~fq~Il~e---DI~EfiPYvfQlla~lve  668 (960)
T KOG1992|consen  594 LTEIVEEVSKNPS--NPQFNHYLFESIGLLIRKTCKANPSAVSSLEEALFPVFQTILSE---DIQEFIPYVFQLLAVLVE  668 (960)
T ss_pred             HHHHHHHHhcCCC--CchhHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence            5555555544443  34445556667777777766532      122455666776642   233322   233566777


Q ss_pred             cCCCch----HHHHHHHH-HHHHHhhccCchhHHHHHHHHHHHHHHhhcccCc--CcHHhHHHHHHHhccC--CCHHHHH
Q 046417          167 AAPNPE----VEQLRKLL-PRLGKAVRIEGFKAKAAVLGVIGSVVRVGGARSK--GVLDWLVPCLVEFLCC--DDWATRK  237 (595)
Q Consensus       167 ~a~d~~----~~~L~~Ll-~rL~klL~~~~~kaK~alLsAIgSlA~a~g~~~~--~yl~~lmp~L~e~L~~--dDW~~Rk  237 (595)
                      .....+    .+.++.|+ |++-+.-  .+.   ++++..+.++...|...+.  ..+..++..++..+.+  .|..   
T Consensus       669 ~~~~~ip~~~~~l~~~lLsp~lW~r~--gNi---palvrLl~aflk~g~~~~~~~~~l~~iLGifqkLiaSka~Dh~---  740 (960)
T KOG1992|consen  669 HSSGTIPDSYSPLFPPLLSPNLWKRS--GNI---PALVRLLQAFLKTGSQIVEAADKLSGILGIFQKLIASKANDHH---  740 (960)
T ss_pred             hcCCCCchhHHHHHHHhcCHHHHhhc--CCc---HHHHHHHHHHHhcCchhhcccccchhHHHHHHHHhcCcccchh---
Confidence            743222    22333322 3322211  122   5777778877776644333  4455566666666653  3433   


Q ss_pred             HHHHHHHHHHHHhH-HhHHHHHHHHHH-HHHhccCCch
Q 046417          238 AAAEVLGKVAVFDK-DLATEYKRSCLA-ALETRRFDKV  273 (595)
Q Consensus       238 aAaEaLgsIA~avg-e~f~py~~~~I~-~Le~crfDKV  273 (595)
                       +...|..|-.... ..+.||+..+.- .|++-+.-|.
T Consensus       741 -GF~LLn~i~~~~~~~~~~py~k~i~~llf~RlqnskT  777 (960)
T KOG1992|consen  741 -GFYLLNTIIESIPPNELAPYMKQIFGLLFQRLQNSKT  777 (960)
T ss_pred             -HHHHHHHHHhcCCHhhhhHHHHHHHHHHHHHHhccCc
Confidence             6777777776663 456667654422 2444444443

>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p []

Probab=81.21  E-value=30  Score=36.17  Aligned_cols=138  Identities=17%  Similarity=0.070  Sum_probs=90.7

Q ss_pred             HHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccc-----hhhHH-HHHHHHHhhcc--------CCChhHHHHHHH
Q 046417           55 FSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSL-----SPHLS-KMISTVSCRLR--------DPDSSVRSACVA  120 (595)
Q Consensus        55 lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I-----~PhLp-kIL~~IvrrLk--------D~ds~VR~Ac~~  120 (595)
                      ++.+++.+.....+..+.+|..++.+|..+.+-++...     ..-|. -+-..+...|-        |....+-.++.-
T Consensus       117 ~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~  196 (282)
T PF10521_consen  117 WPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYP  196 (282)
T ss_pred             hhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHH
Confidence            55666666555555578999999999999999776433     22222 23334444554        455567888888


Q ss_pred             HHHHhhhhhcCCcc---h-hccHHHHHHHhh----cCC---hhHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhcc
Q 046417          121 ATTAMSLNITKPSF---S-VLSKPLIELILV----EQD---VNSQVGGAMCLAAAIDAAPNPEVEQLRKLLPRLGKAVRI  189 (595)
Q Consensus       121 aLg~LA~~l~~~~~---~-~~l~PLi~aLl~----d~n---k~VQ~~AA~cLaaviE~a~d~~~~~L~~Ll~rL~klL~~  189 (595)
                      |+-.++.-......   . .+.+-|-+.+++    ..+   +.+....+-.|..++...+...+.||++|.+-|...+.+
T Consensus       197 ~L~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i~~lGi~~~~hL~rii~~l~~~l~n  276 (282)
T PF10521_consen  197 ALLSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPIIDELGISSVKHLQRIIPVLSQILEN  276 (282)
T ss_pred             HHHHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcC
Confidence            88888764422111   1 133334443433    333   556666666688899988888889999999999999987


Q ss_pred             Cch
Q 046417          190 EGF  192 (595)
Q Consensus       190 ~~~  192 (595)
                      +.+
T Consensus       277 pf~  279 (282)
T PF10521_consen  277 PFG  279 (282)
T ss_pred             CCc
Confidence            754

>PF10350 DUF2428: Putative death-receptor fusion protein (DUF2428); InterPro: IPR019442 This domain is found in a family of proteins of unknown function that are conserved from plants to humans

Probab=80.96  E-value=38  Score=34.93  Aligned_cols=164  Identities=15%  Similarity=0.142  Sum_probs=109.3

Q ss_pred             hHHHHHHHHHHHHHHHHcc-------ccc-hhhHHHHHHHHHhhccCC-ChhHHHHHHHHHHHhhhhhcC--Cc-ch---
Q 046417           71 SPVRKQCVNLLTLLSRSHG-------DSL-SPHLSKMISTVSCRLRDP-DSSVRSACVAATTAMSLNITK--PS-FS---  135 (595)
Q Consensus        71 p~vRKaaI~lLG~lAEg~g-------d~I-~PhLpkIL~~IvrrLkD~-ds~VR~Ac~~aLg~LA~~l~~--~~-~~---  135 (595)
                      |..=|++-.+|+.+++.++       ..+ ..++.+|..+++..|..- .-.+=+++..++.++++.+..  .+ +.   
T Consensus        61 Wr~iKE~s~Ll~~l~~~~~~~~~~~~~~ls~~~i~~ig~~l~~~L~~~rHrGAfe~~~~~f~~lc~~l~~~~~~~l~~LP  140 (255)
T PF10350_consen   61 WRSIKESSLLLGTLVEKIPLPPDSSNSLLSPDQIEKIGELLIEQLLEIRHRGAFESVYPGFTALCRRLWSSNNPELSELP  140 (255)
T ss_pred             HHHHHHHHHHHHHHHHhccccCcccccCCCHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHhcCCCchHHHhH
Confidence            7778899999999997652       222 557888877777776554 345667777888888888763  11 11   


Q ss_pred             -hccHHHHHHHhhc-CCh-hH---HHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhccCch--------hHHHHHHHH
Q 046417          136 -VLSKPLIELILVE-QDV-NS---QVGGAMCLAAAIDAAPNPEVEQLRKLLPRLGKAVRIEGF--------KAKAAVLGV  201 (595)
Q Consensus       136 -~~l~PLi~aLl~d-~nk-~V---Q~~AA~cLaaviE~a~d~~~~~L~~Ll~rL~klL~~~~~--------kaK~alLsA  201 (595)
                       ..+.-+++.+.++ +.. .+   -+|--+++.+++-+.+....+.++..+.+|+.+.+.+..        ..+..++.+
T Consensus       141 ~~WL~~~l~~i~~~~~~~~~iTRRSAGLP~~i~aiL~ae~~~~~~ll~~~~~~Ll~ia~~~~~~~~~~~~d~~qVHAlNi  220 (255)
T PF10350_consen  141 EEWLDELLEAIESKGQQKLSITRRSAGLPFLILAILSAEPSNSRPLLHRTMKSLLEIAKSPSTQHEDEKSDLPQVHALNI  220 (255)
T ss_pred             HHHHHHHHHHHhcccccccccccccCcHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCcccccccccchHHHHHHHH
Confidence             1556666666333 111 12   134455567777665433237888899999988876543        256677889


Q ss_pred             HHHHHHhh--cccCcCcHHhHHHHHHHhccCCCHH
Q 046417          202 IGSVVRVG--GARSKGVLDWLVPCLVEFLCCDDWA  234 (595)
Q Consensus       202 IgSlA~a~--g~~~~~yl~~lmp~L~e~L~~dDW~  234 (595)
                      +..|+.-+  +....+|+...+-.-.+.+.+++|.
T Consensus       221 Lr~if~ds~L~~~~~~yi~~~l~lai~~f~s~~Wa  255 (255)
T PF10350_consen  221 LRAIFRDSKLSEDVSPYIEDALILAIKGFSSPDWA  255 (255)
T ss_pred             HHHHHhcchhHHHHHHHHHHHHHHHHHhCCCccCC
Confidence            99988744  3335688888887777888888884

Several of these proteins have been annotated as being HEAT repeat-containing proteins while others are designated as death-receptor interacting proteins, but neither of these has yet been confirmed. Aberrations in the genes encoding these proteins have been observed in benign thyroid adenomas [].

>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species

Probab=80.85  E-value=32  Score=35.87  Aligned_cols=116  Identities=18%  Similarity=0.279  Sum_probs=76.5

Q ss_pred             HHHHHHHHhhhcCCCChHHHHHHHHHHHHHhCCcCcHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccchhhHHH
Q 046417           19 LKQRVITCLNKLADRDTLPVATAELESIARTLTQDSFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPHLSK   98 (595)
Q Consensus        19 lk~rvl~~L~KL~DrDT~r~A~~~LD~lA~~L~~~~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~PhLpk   98 (595)
                      +-++.....+++.+.+..-.=+-.+-.||+-=....+++++..+....   +            .+-..+||.+...|+.
T Consensus        39 ~Le~a~~~~~e~~~~~~~~~~~~a~~LLaq~re~~A~~~li~l~~~~~---~------------~~~~l~GD~~tE~l~~  103 (249)
T PF06685_consen   39 ILEDAIERANELLDDEEYNLHFYALYLLAQFREERALPPLIRLFSQDD---D------------FLEDLFGDFITEDLPR  103 (249)
T ss_pred             HHHHHHHhHHHhccCcchHHHHHHHHHHHHHhhhhhHHHHHHHHcCCc---c------------hHHHHHcchhHhHHHH
Confidence            334444445566555555444566666666545556888888885421   1            3556678888888888


Q ss_pred             HHHHHH--------hhccCCCh--hHHHHHHHHHHHhhhhhcCC--cchhccHHHHHHHhhcC
Q 046417           99 MISTVS--------CRLRDPDS--SVRSACVAATTAMSLNITKP--SFSVLSKPLIELILVEQ  149 (595)
Q Consensus        99 IL~~Iv--------rrLkD~ds--~VR~Ac~~aLg~LA~~l~~~--~~~~~l~PLi~aLl~d~  149 (595)
                      |+..+.        +.+.|++.  -||.||+.||+.++..-...  ..+.++..++...+..+
T Consensus       104 ilasv~~G~~~~L~~li~~~~~~~yvR~aa~~aL~~l~~~~~~~Re~vi~~f~~ll~~~l~~~  166 (249)
T PF06685_consen  104 ILASVGDGDIEPLKELIEDPDADEYVRMAAISALAFLVHEGPISREEVIQYFRELLNYFLERN  166 (249)
T ss_pred             HHHHHhCCCHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhccC
Confidence            888764        45777765  48999999999999765332  22348888888854433

The function of this family is unknown.

>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional

Probab=80.78  E-value=2e+02  Score=38.00  Aligned_cols=266  Identities=9%  Similarity=0.082  Sum_probs=150.1

Q ss_pred             HHHHhhhcC-CCChHHHHHHHHH---HHHHhC-C-cC---------cHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHH
Q 046417           23 VITCLNKLA-DRDTLPVATAELE---SIARTL-T-QD---------SFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRS   87 (595)
Q Consensus        23 vl~~L~KL~-DrDT~r~A~~~LD---~lA~~L-~-~~---------~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg   87 (595)
                      +-..+++.+ .++ ..+|+-++|   +++..+ . .+         -|.+|.-.+..   +....+|+-.+..+..+...
T Consensus      1138 l~~hf~~vg~~~n-~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~---s~~~eVrE~ILeCv~qmI~s 1213 (1780)
T PLN03076       1138 LSDFFVTIGCSEN-LSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRK---SNAVEIRELIIRCVSQMVLS 1213 (1780)
T ss_pred             HHHHHHHhcCCcc-hhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHh---cCchHHHHHHHHHHHHHHHH
Confidence            444567764 444 346666666   555543 2 12         25555555542   34579999999999999999


Q ss_pred             ccccchhhHHHHHHHHHhhccCCChhHHHHHHHHHHHhhhhhcC-Ccc--hhccHHHHHHHhh--cC--ChhHHHHHHHH
Q 046417           88 HGDSLSPHLSKMISTVSCRLRDPDSSVRSACVAATTAMSLNITK-PSF--SVLSKPLIELILV--EQ--DVNSQVGGAMC  160 (595)
Q Consensus        88 ~gd~I~PhLpkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~~-~~~--~~~l~PLi~aLl~--d~--nk~VQ~~AA~c  160 (595)
                      +++.|..=+..|+..+.....|.+..+=..+-.++..+...... -+.  ...+.-++..|..  .+  +.++-..|..-
T Consensus      1214 ~~~nIkSGWktIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F~DlV~cL~~Fa~q~~~~nISL~AI~l 1293 (1780)
T PLN03076       1214 RVNNVKSGWKSMFMVFTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTTFTDCVNCLIAFTNSRFNKDISLNAIAF 1293 (1780)
T ss_pred             HHhhhhcCcHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHHhCcCcccccHHHHHH
Confidence            99999888889999888888888877666777777766644221 011  1234556666531  11  12222222221


Q ss_pred             HH----HHHhc---------------------------C----C-CchHHHHHHHHHHHHHhhccCchhHHHHHHHHHHH
Q 046417          161 LA----AAIDA---------------------------A----P-NPEVEQLRKLLPRLGKAVRIEGFKAKAAVLGVIGS  204 (595)
Q Consensus       161 La----aviE~---------------------------a----~-d~~~~~L~~Ll~rL~klL~~~~~kaK~alLsAIgS  204 (595)
                      |.    .+.+.                           .    . +....+--.|+..|.++..++...+|..+|..+--
T Consensus      1294 L~~~~~~La~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~D~RlEVR~~ALqtLF~ 1373 (1780)
T PLN03076       1294 LRFCATKLAEGDLGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLSELSFDPRPEIRKSALQVLFD 1373 (1780)
T ss_pred             HHHHHHHHHhccccccccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence            22    11111                           0    0 00113445688888888888888899888877766


Q ss_pred             HHHhhcccCcC-----cHHhHHHHHHHhcc------------------------CCCHHHHHHHHHHHHHHHHHhH---H
Q 046417          205 VVRVGGARSKG-----VLDWLVPCLVEFLC------------------------CDDWATRKAAAEVLGKVAVFDK---D  252 (595)
Q Consensus       205 lA~a~g~~~~~-----yl~~lmp~L~e~L~------------------------~dDW~~RkaAaEaLgsIA~avg---e  252 (595)
                      +..+-|..|.+     .+..++-+|.+.+.                        .+.|. .-....+|..|.....   +
T Consensus      1374 iL~~yG~~Fs~~~W~~if~~VLFPIFd~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~Wl-~eT~~~AL~~lvdLft~fFd 1452 (1780)
T PLN03076       1374 TLRNHGHLFSLPLWERVFESVLFPIFDYVRHAIDPSGGDEPEGQGVDGDQGELDQDAWL-YETCTLALQLVVDLFVKFYP 1452 (1780)
T ss_pred             HHHHhhccCCHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccchhhhhHH-HHHHHHHHHHHHHHHHHHHH
Confidence            66666666654     23444444443331                        12353 3344445555544443   3


Q ss_pred             hHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHhHhcCCC
Q 046417          253 LATEYKRSCLAALETRRFDKVKIVRETMNRSLEMWKEVPGV  293 (595)
Q Consensus       253 ~f~py~~~~I~~Le~crfDKVK~VRda~~~aL~~~K~i~~~  293 (595)
                      .+.++.+.++..|..|-.---..+=.+...+|+.+-.-.|.
T Consensus      1453 ~L~~~L~~~l~ll~~ci~q~n~~la~ig~~~l~~li~~ng~ 1493 (1780)
T PLN03076       1453 TVNPLLKKVLMLLVSFIKRPHQSLAGIGIAAFVRLMSNAGH 1493 (1780)
T ss_pred             HHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHhhc
Confidence            34445677788888884443333333345555554444433

>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]

Probab=80.09  E-value=33  Score=45.87  Aligned_cols=218  Identities=13%  Similarity=0.112  Sum_probs=121.3

Q ss_pred             CCChHHHHHHHHHHHHHhCC---cCcHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccchhhHHHHHHHHHhhcc
Q 046417           32 DRDTLPVATAELESIARTLT---QDSFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPHLSKMISTVSCRLR  108 (595)
Q Consensus        32 DrDT~r~A~~~LD~lA~~L~---~~~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~PhLpkIL~~IvrrLk  108 (595)
                      |-++..+|...+-.++--..   ++.+..-..++.+-...-.-..|-+++..+..++...+.+..|+++.++..+...+.
T Consensus       106 ~~~~~~~a~~~~~l~~~~~~~~~~~~v~~~~k~~~ew~~~~~~~~~~~a~~~~~~l~~~~P~~~~~~~~~~~~~i~~~~~  185 (2341)
T KOG0891|consen  106 DVEVMELAAKSLGLLAAPGKTKTAELVDFEVKRLIEWLGERQEYRRLAAVLIIKELADNVPTFFYPYVNKFFKNIFAALR  185 (2341)
T ss_pred             ChHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhhhhhhhhhHHHHHhhhhHhhcCcHHHHHHHHHHHHHHHHhcc
Confidence            55677777777766555322   333444444444433222235677899999999999999999999999999999999


Q ss_pred             CCChhHHHHHHHHHHHhhhhhcCCcchhccHHHHHHHhh--------cCChhHHHHHHHHHHHHHhcCCCchHHHHHHHH
Q 046417          109 DPDSSVRSACVAATTAMSLNITKPSFSVLSKPLIELILV--------EQDVNSQVGGAMCLAAAIDAAPNPEVEQLRKLL  180 (595)
Q Consensus       109 D~ds~VR~Ac~~aLg~LA~~l~~~~~~~~l~PLi~aLl~--------d~nk~VQ~~AA~cLaaviE~a~d~~~~~L~~Ll  180 (595)
                      |+++.+|..||.++......+.+.. .....+-+.-.+.        +..+  --++......++..... ........+
T Consensus       186 ~~~~~i~~~a~~al~~~~~~~~~~~-~~~~~~~~~rcvd~~~~~l~~~~~~--~~~~~~~~~e~~~~~~~-~~~~~~~~~  261 (2341)
T KOG0891|consen  186 DPKPAIRLQACSALHAVLSSLAQRE-AKLKPQWYQRCVDEARHGLSSDGVK--IHASLLVYNELLRISDP-FLEKYDSTC  261 (2341)
T ss_pred             CCChhhhHHHHHHHHHHHhhhhhcc-chhhhHHHHHHHHhccccccchHHH--hhhHHHHHHHHHHHHHH-HHHhhHHHH
Confidence            9999999999999988776654322 1111111111111        1111  00111112222211111 111122223


Q ss_pred             --HHHHHhhccCchhHHHHHHHHHHHHHH--hhcccCcCcHHhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhHHhHHH
Q 046417          181 --PRLGKAVRIEGFKAKAAVLGVIGSVVR--VGGARSKGVLDWLVPCLVEFLCCDDWATRKAAAEVLGKVAVFDKDLATE  256 (595)
Q Consensus       181 --~rL~klL~~~~~kaK~alLsAIgSlA~--a~g~~~~~yl~~lmp~L~e~L~~dDW~~RkaAaEaLgsIA~avge~f~p  256 (595)
                        ..+.+.+++....  ..+.--++-+|.  .++-. ..|+...|..+...+...+    -.|...|+.||.+++..+.+
T Consensus       262 ~~~~~~~~lk~~~i~--~~l~~~~~~~~~~~~~~~~-~~~l~~~~~~~l~~~~~~~----~~~~~~i~~ia~al~~~~~~  334 (2341)
T KOG0891|consen  262 VRQAKGKLLKSIVIR--MTLSQILPLLAAFNPAKFQ-VKYLHTEMDHLLSILRKEK----TRAFVSIGEIAVALGSSMSP  334 (2341)
T ss_pred             HHHHHHHHhccccHH--HHHHhccHHHhhhhhhhhH-HHHHHHHHHHHHHhhhccc----hhHHHHHHHHHHHhhhhhhh
Confidence              2233334333322  111111122222  22211 2566666666666665333    77999999999999988887


Q ss_pred             HHHH
Q 046417          257 YKRS  260 (595)
Q Consensus       257 y~~~  260 (595)
                      |...
T Consensus       335 ~~~~  338 (2341)
T KOG0891|consen  335 YLSN  338 (2341)
T ss_pred             hhcc
Confidence            7644

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	595
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	1e-13
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	6e-08
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	8e-08
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	8e-13
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	4e-05
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	8e-05
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	9e-04
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	1e-11
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	6e-10
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	1e-08
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	7e-05
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	6e-08
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	1e-07
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	5e-06
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	8e-06
1qgr_A	876	Protein (importin beta subunit); transport recepto	1e-05
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	1e-05
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	1e-04
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	4e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-04

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588

 Score = 72.7 bits (178), Expect = 1e-13
 Identities = 52/279 (18%), Positives = 105/279 (37%), Gaps = 18/279 (6%)

Query: 15  STNDLKQRVITCLNKLA--DRDTLPVATAE-LESIARTLTQDSFSSF-LNCLQTTDSSSK 70
             +++K  +I   + LA  ++D++ +   E   +IA+ L Q+   +  +  L+       
Sbjct: 196 ELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQAAEDKS 255

Query: 71  SPVRKQCVNLLTLLSRSHGDSLSPHLSKMISTVSCRLRDPDSSVRSACVAATTAMSLNIT 130
             VR    +  T L ++ G  ++   + ++      ++D ++ VR+A          N++
Sbjct: 256 WRVRYMVADKFTELQKAVGPEITK--TDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLS 313

Query: 131 KPSFSVLSKPLIELILVE--QDVNSQVGGAMCLAAAID--AAPNPEVEQLRKLLPRLGKA 186
                 +    I   + E   D N  V     LA+ I   +    +   +  LLP     
Sbjct: 314 ADCRENVIMSQILPCIKELVSDANQHV--KSALASVIMGLSPILGKDNTIEHLLPLFLAQ 371

Query: 187 VRIEGFKAKAAVLGVIGSVVRVGGARSKGVLDWLVPCLVEFLCCDDWATRKAAAEVLGKV 246
           ++ E  + +  ++  +  V  V G R   +   L+P +VE      W  R A  E +  +
Sbjct: 372 LKDECPEVRLNIISNLDCVNEVIGIRQ--LSQSLLPAIVELAEDAKWRVRLAIIEYMPLL 429

Query: 247 A-VFDKDLATEYKRSCLAALETRRFDKVKIVRETMNRSL 284
           A     +   E      +       D V  +RE    +L
Sbjct: 430 AGQLGVEFFDEK---LNSLCMAWLVDHVYAIREAATSNL 465

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588

 Score = 54.6 bits (131), Expect = 6e-08
 Identities = 27/206 (13%), Positives = 63/206 (30%), Gaps = 7/206 (3%)

Query: 43  LESIARTLTQDSFSSFL-NCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPHLSKMIS 101
           L+ +   +     S  L   +      +K  VR   +  + LL+   G        K+ S
Sbjct: 387 LDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFD--EKLNS 444

Query: 102 TVSCRLRDPDSSVRSACVAATTAMSLNITKPSFSVLSKPLIELILVEQDVNSQVGGAMCL 161
                L D   ++R A  +    +     K        P +  +  + +   ++    C+
Sbjct: 445 LCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMSGDPNYLHRMTTLFCI 504

Query: 162 AAAIDAAPNPEVEQLRKLLPRLGKAVRIEGFKAKAAVLGVIGSVVRVGGARSKGVLDWLV 221
               +        +   +LP + +         +  V   +  +  +    +  +   + 
Sbjct: 505 NVLSEVCGQDITTK--HMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNST--LQSEVK 560

Query: 222 PCLVEFLCCDDWATRKAAAEVLGKVA 247
           P L +     D   +  A E L  ++
Sbjct: 561 PILEKLTQDQDVDVKYFAQEALTVLS 586

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588

 Score = 54.3 bits (130), Expect = 8e-08
 Identities = 43/315 (13%), Positives = 93/315 (29%), Gaps = 18/315 (5%)

Query: 43  LESIARTLTQDSFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPHLSKMIST 102
           L +IA  L  +   S L    T     +  V       L   +   G     ++  ++  
Sbjct: 34  LSTIALALGVERTRSELLPFLTDTIYDEDEVLLALAEQLGTFTTLVGGP--EYVHCLLPP 91

Query: 103 VSCRLRDPDSSVRSACVAATTAMSLNITKPSFSVLSKPLIELILVEQDVNSQVGGAMCLA 162
           +       ++ VR   V +  A+S   +         PL++ +       S+       +
Sbjct: 92  LESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFS 151

Query: 163 AAIDAAPNPEVEQLRKLLPRLGKAVRIEGFKAKAAVLGVIGSVVRVGGARSKGVLDWLVP 222
                  +    +LR+    L         +A A+ LG    V+ +       V   ++P
Sbjct: 152 VCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLEL-----DNVKSEIIP 206

Query: 223 CLVEFLCCDDWATRKAAAEVLGKVA-VFDKDLATEYKRSCLAALETRRFDKVKIVRETMN 281
                   +  + R  A E    +A +  ++         +  L     DK   VR  + 
Sbjct: 207 MFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEAL---VMPTLRQAAEDKSWRVRYMVA 263

Query: 282 RSLEMWKEVPGVCEEVSSPSPS-------KSFSIDNGSSGCFPSITKSSQNVGLRTPQPK 334
                 ++  G     +   P+           +   +S       ++            
Sbjct: 264 DKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMS 323

Query: 335 KMVPTSRSPASDSSY 349
           +++P  +   SD++ 
Sbjct: 324 QILPCIKELVSDANQ 338

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230

 Score = 70.9 bits (172), Expect = 8e-13
 Identities = 37/260 (14%), Positives = 90/260 (34%), Gaps = 37/260 (14%)

Query: 62  LQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPHLSKMISTVSCRLRDPDSSVRSACVAA 121
                      V+ + ++++  +    G  L      +++ +  +L  P  +VR   + A
Sbjct: 139 TSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIA 198

Query: 122 TTAMSLNITKPSFSVLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNPEVEQLRKLLP 181
              + ++     F  L + L+  +     +++      C+AA    A +   E L K++P
Sbjct: 199 LGHLVMSCGNIVFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIP 258

Query: 182 RLGKAVRIEGFKAKAAVLGVIGSVVRVGGARSKGVLDWLVPCLVEFLCCDD--------- 232
            + K   ++  + +   +    S VR         +  ++   +++L  D          
Sbjct: 259 LVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDE 318

Query: 233 ----------------------------WATRKAAAEVLGKVAVFDKDLATEYKRSCLAA 264
                                       W  R+AAA+ L  V     ++  E+ ++   A
Sbjct: 319 DENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPA 378

Query: 265 LETRRFDKVKIVRETMNRSL 284
           L +R  ++ + V+  +  + 
Sbjct: 379 LISRFKEREENVKADVFHAY 398

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230

 Score = 45.9 bits (107), Expect = 4e-05
 Identities = 35/241 (14%), Positives = 73/241 (30%), Gaps = 17/241 (7%)

Query: 21  QRVITCLNKLADRDTLPVATAELESIARTLTQDSFSSFLNCLQTTDSSSKSPVRKQCVNL 80
             ++     +      P A  + E+    L Q    + +  L           R+ C N+
Sbjct: 399 LSLLKQTRPVQSWLCDPDAMEQGETPLTML-QSQVPNIVKALHKQMKEKSVKTRQCCFNM 457

Query: 81  LTLLSRSHGDSLSPHLSKMISTVSCRLRDPDSS--VRSACVAATTAMSLNITKPSFSVLS 138
           LT L      +L+ H+  ++  +   L D  SS  ++   ++    +  N +   F    
Sbjct: 458 LTELVNVLPGALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHV 517

Query: 139 KPLIELILVE-QDVNSQV-----GGAMCLAAAIDAAPNPEVEQLRKLLPRLGKAVRIE-- 190
           + L+  ++    D   ++          L   I     P        +  L         
Sbjct: 518 QALVPPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIKRLK 577

Query: 191 ----GFKAKAAVLGVIGSVVRVGGARSKGVLDWLVPCLVEFLCCDDWATRKAAAEVLGKV 246
                 + K   +  +G ++   G      L   +   +E L  +    R    + L  +
Sbjct: 578 AADIDQEVKERAISCMGQIICNLGDNLGSDLPNTLQIFLERLKNEIT--RLTTVKALTLI 635

Query: 247 A 247
           A
Sbjct: 636 A 636

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230

 Score = 44.7 bits (104), Expect = 8e-05
 Identities = 33/248 (13%), Positives = 78/248 (31%), Gaps = 8/248 (3%)

Query: 5   KRSSSASPPPSTNDLKQRVITCLNKLADRDTLPVATAELESIARTLTQDSFSSFL--NCL 62
           K   S+    S + L + +    + L     L       +++  T T +     L     
Sbjct: 721 KVYPSSLSKISGSILNELIGLVRSPLLQGGALSAMLDFFQALVVTGTNNLGYMDLLRMLT 780

Query: 63  QTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPHLSKMISTVSCRLRDPDSSVRSACVAAT 122
               S S +   KQ    +     +   +       ++      +++  S+     +A  
Sbjct: 781 GPVYSQSTALTHKQSYYSIAKCVAALTRACPKEGPAVVGQFIQDVKNSRSTDSIRLLALL 840

Query: 123 TAMSLNITKPSFSVLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNPEVEQLRKLLPR 182
           +   +       S   +    ++      + +V  A   A    +  N       + LP 
Sbjct: 841 SLGEV-GHHIDLSGQLELKSVILEAFSSPSEEVKSAASYALGSISVGNLP-----EYLPF 894

Query: 183 LGKAVRIEGFKAKAAVLGVIGSVVRVGGARSKGVLDWLVPCLVEFLCCDDWATRKAAAEV 242
           + + +  +  +    +  +   +        K  ++ +   L++   C +  TR   AE 
Sbjct: 895 VLQEITSQPKRQYLLLHSLKEIISSASVVGLKPYVENIWALLLKHCECAEEGTRNVVAEC 954

Query: 243 LGKVAVFD 250
           LGK+ + D
Sbjct: 955 LGKLTLID 962

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230

 Score = 41.2 bits (95), Expect = 9e-04
 Identities = 38/266 (14%), Positives = 79/266 (29%), Gaps = 25/266 (9%)

Query: 9    SASPPPSTNDLKQRVITCLNKLADRDTLPVATAELESIARTLTQDSFSSFLNCLQTTDSS 68
            S++         + +   L K  +           E + + LT     + L  L+    S
Sbjct: 918  SSASVVGLKPYVENIWALLLKHCECAEEGTRNVVAECLGK-LTLIDPETLLPRLKGYLIS 976

Query: 69   SKSPVRKQCVNLLTLLSRSHGDSLSPHLSKMISTVSCRLRDPDSSVRSACVAATTAMSLN 128
              S  R   V  +      H   + P L   I      L DPD +VR   +    + + N
Sbjct: 977  GSSYARSSVVTAVKFTISDHPQPIDPLLKNCIGDFLKTLEDPDLNVRRVALVTFNSAAHN 1036

Query: 129  ITKPSFSVLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNPEVEQLRKLLPRLGKAVR 188
                   +L   ++  +  E  V                      E +R++     K   
Sbjct: 1037 KPSLIRDLLDT-VLPHLYNETKVRK--------------------ELIREVEMGPFKHTV 1075

Query: 189  IEGFKAKAAVLGVIGSVVRVGGARSKGVLDWLVPCLVEFLCCDDWATRKAAAEVLGKVAV 248
             +G   + A    + +++       +  +   +  + + L  D +  +     +L +++ 
Sbjct: 1076 DDGLDIRKAAFECMYTLLDS--CLDRLDIFEFLNHVEDGL-KDHYDIKMLTFLMLVRLST 1132

Query: 249  FDKDLATEYKRSCLAALETRRFDKVK 274
                   +     +  L      KVK
Sbjct: 1133 LCPSAVLQRLDRLVEPLRATCTTKVK 1158

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852

 Score = 67.1 bits (163), Expect = 1e-11
 Identities = 44/223 (19%), Positives = 79/223 (35%), Gaps = 7/223 (3%)

Query: 32  DRDTLPVATAELESIARTLTQDSFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDS 91
           D +    + A L+ +A     +     L  L+      +  V++  + +L  ++      
Sbjct: 334 DWNLRKCSAAALDVLANVYRDELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQG 393

Query: 92  LSPHLSKMISTVSCRLRDPDSSVRSACVAATTAMSLNITKPSFSVLSKPLIELILVE-QD 150
           + P+L ++I  +   L D  + VRS      +  +  +         KPL+  +L    D
Sbjct: 394 MIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILD 453

Query: 151 VNSQVGGAMC--LAAAIDAAPNPEVEQLRKLLPRLGKAVRIEGFKAKAAVLGVIGSVVRV 208
            N +V  A C   A   + A    V  L  +L  L  A      K    +   IG++   
Sbjct: 454 SNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADS 513

Query: 209 GGA--RSKGVLDWLVPCLVEFLC--CDDWATRKAAAEVLGKVA 247
            G        +  L+P L++      D+        E L  VA
Sbjct: 514 VGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLFPLLECLSSVA 556

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852

 Score = 61.3 bits (148), Expect = 6e-10
 Identities = 46/302 (15%), Positives = 91/302 (30%), Gaps = 36/302 (11%)

Query: 21  QRVITCLNKLADRDTLPVATAELESIARTLT------QDSFSSFLNCLQTTDSSSKSPVR 74
             +I    +     +  + +  +  + + +            SF+  L       +  VR
Sbjct: 173 NIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFIENLFALAGDEEPEVR 232

Query: 75  KQCVNLLTLLSRSHGDSLSPHLSKMISTVSCRLRDPDSSVRSACV-----AATTAMSLNI 129
           K     L +L     D L PH+  ++  +  R +D D +V           A   +  ++
Sbjct: 233 KNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDV 292

Query: 130 TKPSFSVLSKPLIELILV---------------------EQDVNSQVGGAMCLAAAIDAA 168
                  L   L+  +                         D N +   A  L    +  
Sbjct: 293 LVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVY 352

Query: 169 PNPEVEQLRKLLPRLGKAVRIEGFKAKAAVLGVIGSVVRVGGARSKGVLDWLVPCLVEFL 228
            +  +     +LP L + +    +  K + + V+G++           L  L+P L++ L
Sbjct: 353 RDELLPH---ILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCL 409

Query: 229 CCDDWATRKAAAEVLGKVA-VFDKDLATEYKRSCLAALETRRFDKVKIVRETMNRSLEMW 287
                  R      L + A          Y +  +  L  R  D  K V+E    +    
Sbjct: 410 SDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATL 469

Query: 288 KE 289
           +E
Sbjct: 470 EE 471

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852

 Score = 56.7 bits (136), Expect = 1e-08
 Identities = 38/242 (15%), Positives = 83/242 (34%), Gaps = 13/242 (5%)

Query: 14  PSTNDLKQRVITCLNKL--ADRDTLPVATAELESIARTLTQDSFSSFLNCLQTTDSSSKS 71
           P    L+Q ++  L +    D         +LE + +      F+++L  + T   S   
Sbjct: 7   PDEQGLQQ-ILQLLKESQSPDTTIQRTVQQKLEQLNQ---YPDFNNYLIFVLTKLKSEDE 62

Query: 72  PVRKQCVNLLTLLSRSHGDSLSPHLSKMI-STVSCRLRDPDSSVRSACVAATTAMSLNIT 130
           P R     +L    ++H  +    ++  I S     + D    +R+      T ++    
Sbjct: 63  PTRSLSGLILKNNVKAHFQNFPNGVTDFIKSECLNNIGDSSPLIRATVGILITTIASKGE 122

Query: 131 KPSFSVLSKPLIELILVEQDVNSQVGGAMCLAAAI-DAAPNPEVEQLRK----LLPRLGK 185
             ++  L   L  L L  +D N+  G    L     D+A   + + L +    ++P+  +
Sbjct: 123 LQNWPDLLPKLCSL-LDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQ 181

Query: 186 AVRIEGFKAKAAVLGVIGSVVRVGGARSKGVLDWLVPCLVEFLCCDDWATRKAAAEVLGK 245
             +    K ++  +  +   +          +D  +  L      ++   RK     L  
Sbjct: 182 FFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFIENLFALAGDEEPEVRKNVCRALVM 241

Query: 246 VA 247
           + 
Sbjct: 242 LL 243

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852

 Score = 44.8 bits (105), Expect = 7e-05
 Identities = 47/295 (15%), Positives = 91/295 (30%), Gaps = 43/295 (14%)

Query: 14  PSTNDLKQRVITCLNKLADRDTLPVATAELESIARTLTQDSFSSFLNCLQTTDSSSKSPV 73
               +  +     L K+ +           E +   +     +  +         S   +
Sbjct: 139 SEDYNTCEGAFGALQKICEDSA--------EILDSDVLDRPLNIMIPKFLQFFKHSSPKI 190

Query: 74  RKQCVNLLTLLSRSHGDSLSPHLSKMISTVSCRLRDPDSSVR-SACVAATTAMSLNITK- 131
           R   V  +     S   +L  H+   I  +     D +  VR + C A    + + + + 
Sbjct: 191 RSHAVACVNQFIISRTQALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRL 250

Query: 132 -PSFSVLSKPLIELIL-VEQDVNSQVGGAMCLAAAIDAAPNPEVEQLRKLLPRLGKAVRI 189
            P    + + +++     +++V  +        A      +  V  L KL+P L   ++ 
Sbjct: 251 LPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKY 310

Query: 190 -------------------------EGFKAKAAVLGVIGSVVRVGGARSKGVLDWLVPCL 224
                                       K  AA L V+ +V R        +L  ++P L
Sbjct: 311 SDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYR------DELLPHILPLL 364

Query: 225 VEFLCCDDWATRKAAAEVLGKVAVFDKDLATEYKRSCLAALETRRFDKVKIVRET 279
            E L   +W  +++   VLG +A         Y    +  L     DK  +VR  
Sbjct: 365 KELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSI 419

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253

 Score = 53.2 bits (127), Expect = 6e-08
 Identities = 41/248 (16%), Positives = 83/248 (33%), Gaps = 19/248 (7%)

Query: 39  ATAELESIARTLTQDSFS-SFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPHLS 97
           A A  E + + L    +  S L  L          V K  ++++ +++++  D   P L 
Sbjct: 13  ALANGEHLEKILIMAKYDESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPMLK 72

Query: 98  KMISTVSCRLRDPDSSVRSACVAATTAMSLNITKPSFSVLSKPLIELILVEQDVNSQVGG 157
           K+ S +    +     +      A   M+    +   S++  P++       D  +++  
Sbjct: 73  KLFSLLK---KSEAIPLTQEIAKAFGQMAKEKPELVKSMI--PVLFANYRIGDEKTKINV 127

Query: 158 AMCLAAAIDAAPNPEVEQLRKLLPRLGKAVRIEGFKAKAAVLGVIGSVVRVGGARSKGVL 217
           +  L     A P      +R  +  L    R    + K   L  I ++           L
Sbjct: 128 SYALEEIAKANPMLMASIVRDFMSMLSSKNR----EDKLTALNFIEAMGENSFKYVNPFL 183

Query: 218 DWLVPCLVEFLCCDDWATRKAAAEVLGKVAVFDKDLATEYKRSCLAALETRRFDKVKIVR 277
             ++  L +     D   R +A E L  +A  +  L     R  +        D   +V 
Sbjct: 184 PRIINLLHD----GDEIVRASAVEALVHLATLNDKL-----RKVVIKRLEELNDTSSLVN 234

Query: 278 ETMNRSLE 285
           +T+   + 
Sbjct: 235 KTVKEGIS 242

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Length = 242

 Score = 51.9 bits (124), Expect = 1e-07
 Identities = 37/233 (15%), Positives = 77/233 (33%), Gaps = 16/233 (6%)

Query: 53  DSFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPHLSKMISTVSCRL-RDPD 111
           D  S             K  +RK+ + +L  L   H    +     ++S +   + +D +
Sbjct: 11  DILSKMPKDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSN 70

Query: 112 SSVRSACVAATTAMSLNITK---PSFSVLSKPLIELILVEQDVNSQVGGAMCLAAAIDAA 168
             + +        ++  + K      S     L+E    E+  N        + A   + 
Sbjct: 71  VVLVAMAGKCLALLAKGLAKRFSNYASACVPSLLEK-FKEKKPNVVTALREAIDAIYAST 129

Query: 169 PNPEVEQLRKLLPRLGKAVRIEGFKAKAAVLGVIGSVVRVGGAR--SKGVLDWLVPCLVE 226
                         + +++  +    K+     I   +        +K +L  L   LV+
Sbjct: 130 SLEA------QQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLLKLLTTSLVK 183

Query: 227 FLCCDDWATRKAAAEVLGKVAVFDKDLATEYKRSCLAALETRRFDKVKIVRET 279
            L   D   R ++AE LG +    K +  +     LA ++  +  K+K  +E 
Sbjct: 184 TLNEPDPTVRDSSAEALGTLI---KLMGDKAVTPLLADVDPLKMAKIKECQEK 233

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201

 Score = 46.9 bits (112), Expect = 5e-06
 Identities = 44/186 (23%), Positives = 64/186 (34%), Gaps = 40/186 (21%)

Query: 106 RLRDPDSSVRSACVAATTAMSLNITKPSFSVLSKPLIELILVEQDVNSQVGGAMCLAAAI 165
            L+D D+ VR A   A   +              PLI+ +   +D +  V      A A+
Sbjct: 53  ALKDEDAWVRRAAADALGQIGDERAVE-------PLIKAL---KDEDGWV--RQSAAVAL 100

Query: 166 DAAPNPE-VEQLRKLLPRLGKAVRIEGFKAKAAVLGVIGSVVRVGGARSKGVLDWLVPCL 224
               +   VE L K L      VRI      A  LG IG                 V  L
Sbjct: 101 GQIGDERAVEPLIKALKDEDWFVRIAA----AFALGEIGDER-------------AVEPL 143

Query: 225 VEFLCCDDWATRKAAAEVLGKVAVFDKDLATEYKRSCLAALETRRFDKVKIVRETMNRSL 284
           ++ L  +D   R++AA+ LG+       +  E      AA+E          R+     L
Sbjct: 144 IKALKDEDGWVRQSAADALGE-------IGGE---RVRAAMEKLAETGTGFARKVAVNYL 193

Query: 285 EMWKEV 290
           E  K +
Sbjct: 194 ETHKSL 199

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211

 Score = 46.2 bits (110), Expect = 8e-06
 Identities = 47/200 (23%), Positives = 72/200 (36%), Gaps = 45/200 (22%)

Query: 106 RLRDPDSSVRSACVAATTAMSLNITKPSFSVLSKPLIELILVEQDVNSQVGGAMCLAAAI 165
            L+D    VR A   A     L       +V  +PLI+ +   +D ++ V      A A+
Sbjct: 27  NLQDDSYYVRRAAAYA-----LGKIGDERAV--EPLIKAL---KDEDAWV--RRAAADAL 74

Query: 166 DAAPNPE-VEQLRKLLPRLGKAVRIEGFKAKAAVLGVIGS----------------VVRV 208
               +   VE L K L      VR    ++ A  LG IG                  VR+
Sbjct: 75  GQIGDERAVEPLIKALKDEDGWVR----QSAAVALGQIGDERAVEPLIKALKDEDWFVRI 130

Query: 209 GGARSKGVLDW--LVPCLVEFLCCDDWATRKAAAEVLGKVAVFDKDLATEYKRSCLAALE 266
             A + G +     V  L++ L  +D   R++AA+ LG+       +  E      AA+E
Sbjct: 131 AAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGE-------IGGE---RVRAAME 180

Query: 267 TRRFDKVKIVRETMNRSLEM 286
                     R+     LE 
Sbjct: 181 KLAETGTGFARKVAVNYLET 200

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Length = 876

 Score = 47.6 bits (112), Expect = 1e-05
 Identities = 26/212 (12%), Positives = 59/212 (27%), Gaps = 21/212 (9%)

Query: 38  VATAELESIARTLTQDSFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRS-HGDSLSPHL 96
            A   L  +A     D     L  ++    +     R   V     +        L P +
Sbjct: 347 AAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV 406

Query: 97  SKMISTVSCRLRDPDSSVRSACVAATTAMSLNITKPSF-SVLSKPLIELILVEQDVNSQV 155
            + + T+   ++DP   VR         +   + + +   V   PL++ ++       +V
Sbjct: 407 IQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSAEPRV 466

Query: 156 GGAMCLA------------AAIDAAPNPEVEQLRKLLPRLGKAV-------RIEGFKAKA 196
              +C A               D    P    L      + + +              ++
Sbjct: 467 ASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRS 526

Query: 197 AVLGVIGSVVRVGGARSKGVLDWLVPCLVEFL 228
           +    +  +V+         +      ++E L
Sbjct: 527 SAYESLMEIVKNSAKDCYPAVQKTTLVIMERL 558

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Length = 861

 Score = 47.1 bits (111), Expect = 1e-05
 Identities = 20/196 (10%), Positives = 61/196 (31%), Gaps = 10/196 (5%)

Query: 43  LESIARTLTQDSFSSFLNCLQTTDSSSKSPVRKQCVNLLT-LLSRSHGDSLSPHLSKMIS 101
           L+  A+          L  ++   ++     R+  V     ++        + ++ + + 
Sbjct: 355 LQLFAQNCGNHILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALP 414

Query: 102 TVSCRLRDPDSSVRSACVAATTAMSLNITKP-SFSVLSKPLIELILVEQDVNSQVGGAMC 160
           ++   + D    V+         ++ ++ +          +++  L+    + +V     
Sbjct: 415 SILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDHPKVATNCS 474

Query: 161 LAAAI------DAAPNPEVEQLRKLLPRLGKAVRIEG--FKAKAAVLGVIGSVVRVGGAR 212
                      +A P+P       L+  L  A       F A+A+    + ++V      
Sbjct: 475 WTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDT 534

Query: 213 SKGVLDWLVPCLVEFL 228
                  +   +++ L
Sbjct: 535 VAETSASISTFVMDKL 550

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280

 Score = 43.2 bits (102), Expect = 1e-04
 Identities = 22/175 (12%), Positives = 40/175 (22%), Gaps = 30/175 (17%)

Query: 107 LRDPDSSVRSACVAATTAMSLNITKPSFSVLSKPLIELILVEQDVNSQVGGAMCLAAAID 166
             D +   R         + +             L  + L ++    +       A    
Sbjct: 63  CSDKNYIRRDIGAFILGQIKICKKCEDNVF--NILNNMALNDKSACVRATAIESTAQRCK 120

Query: 167 AAPNPEVEQLRKLLPRLG---KAVRIEGFKAKAAVLGVIGSVVRVGGARSKGVLDWLVPC 223
             P    + + +           VR       A  + VI                  +P 
Sbjct: 121 KNPIYSPKIVEQSQITAFDKSTNVRRAT----AFAISVINDKA-------------TIPL 163

Query: 224 LVEFLCCDDWATRKAAAEVLGKVAVFDKDLATEYKRSCLAALETRRFDKVKIVRE 278
           L+  L   +   R  AA  +      + D+                 DK + VR 
Sbjct: 164 LINLLKDPNGDVRNWAAFAININKYDNSDI--------RDCFVEMLQDKNEEVRI 210

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280

 Score = 41.7 bits (98), Expect = 4e-04
 Identities = 46/262 (17%), Positives = 78/262 (29%), Gaps = 54/262 (20%)

Query: 18  DLKQRVITCLNKLADRDTLPVATAELES--------IARTLTQ--------DSFSSFLNC 61
             +      L     +D + +A               A  L Q        D+  + LN 
Sbjct: 38  LKRISSARVLQLRGGQDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCEDNVFNILNN 97

Query: 62  LQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPHLSKMISTVSCRLRDPDSSVRSACVAA 121
           +   D S+   VR   +                +  K++        D  ++VR A   A
Sbjct: 98  MALNDKSA--CVRATAIESTAQR----CKKNPIYSPKIVEQSQITAFDKSTNVRRATAFA 151

Query: 122 TTAMSLNITKPSFSVLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNPE-VEQLRKLL 180
                +++     ++    LI L+   +D N  V      A  I+   N +  +   ++L
Sbjct: 152 -----ISVINDKATI--PLLINLL---KDPNGDVRNWAAFAININKYDNSDIRDCFVEML 201

Query: 181 PRLGKAVRIEGFKAKAAVLGVIGSV--------------VRVGGARSKGVL--DWLVPCL 224
               + VRIE   A    L                    V      + G L    L+P L
Sbjct: 202 QDKNEEVRIE---A-IIGLSYRKDKRVLSVLCDELKKNTVYDDIIEAAGELGDKTLLPVL 257

Query: 225 VEFLC-CDDWATRKAAAEVLGK 245
              L   DD     +A + L +
Sbjct: 258 DTMLYKFDDNEIITSAIDKLKR 279

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 43.7 bits (102), Expect = 2e-04
 Identities = 44/299 (14%), Positives = 72/299 (24%), Gaps = 96/299 (32%)

Query: 17  NDLKQRVITCLNKLADR-DTLPVATAELESIARTLTQDSFSSFLNCLQTTDS-SSKSPVR 74
             L  ++       +D    + +    +++  R L +     + NCL    +  +     
Sbjct: 203 QKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSK--PYENCLLVLLNVQNAKAWN 260

Query: 75  K---QCVNLLTLLSRSHGDSLSPHLSKMISTVSCRLRDPDSSVRSACVAATTAMSLNITK 131
                C  LLT   +   D LS   +  IS                        S+ +T 
Sbjct: 261 AFNLSCKILLTTRFKQVTDFLSAATTTHISLDH--------------------HSMTLTP 300

Query: 132 P-SFSVLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNPEVEQLRKLLPRLGKAVRIE 190
               S+L K                     L       P     ++    PR        
Sbjct: 301 DEVKSLLLK--------------------YLDCRPQDLP----REVLTTNPR-------- 328

Query: 191 GFKAKAAVLGVIGSVVRVGGARSKGVLDWLVPCLVEFLCCDDWATRKAAAEVLGKV-AVF 249
                   L +I   +R G A       W           D+W  +    + L  +    
Sbjct: 329 -------RLSIIAESIRDGLAT------W-----------DNW--KHVNCDKLTTIIESS 362

Query: 250 DKDLATEYKRSCLAALETRRFDK-VKIVRETMNRSLEM-WKEVPG-VCEEVSSPSPSKS 305
              L     R     L    F     I        L + W +V       V +     S
Sbjct: 363 LNVLEPAEYRKMFDRLSV--FPPSAHIPTIL----LSLIWFDVIKSDVMVVVNKLHKYS 415

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.1 bits (98), Expect = 5e-04
 Identities = 49/334 (14%), Positives = 85/334 (25%), Gaps = 99/334 (29%)

Query: 345 SDSSYGTTSKTEIS--FKSNNRKSGA----SILC-----------KSADGKSSDWKVE-I 386
            D      SK EI     S +  SG       L            +     +  + +  I
Sbjct: 39  QDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPI 98

Query: 387 AV-PRTPSSIGTC--EVHNRTSDSKDA----------KLGEVENNV-NCQPEKKMVIY-- 430
               R PS +     E  +R  +                 ++   +   +P K ++I   
Sbjct: 99  KTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGV 158

Query: 431 ----------SKIRDDKMYKCGGFK-----SGSRVVPYSDDEM-------SDFVHHNGID 468
                           K+     FK       +   P +  EM        D    +  D
Sbjct: 159 LGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSD 218

Query: 469 EDFDYPKDPEDLSLIREQLLQIENQQSSL--------------FD------LLQRFIGSS 508
              +       +     +LL+ +  ++ L              F+      L  RF   +
Sbjct: 219 HSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVT 278

Query: 509 QSGMNSLETRVHGLEMALDEISYDLALSNGRILNNNAAENTCCKLPG------------- 555
                +  T +     +LD  S  L     + L     +     LP              
Sbjct: 279 DFLSAATTTHI-----SLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSII 333

Query: 556 AEFLS-----SKFWRRAEGRSSTSRFSSSGNILP 584
           AE +         W+       T+   SS N+L 
Sbjct: 334 AESIRDGLATWDNWKHVNCDKLTTIIESSLNVLE 367

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	595
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	99.86
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	99.82
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	99.82
2qk1_A	249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	99.81
1qgr_A	876	Protein (importin beta subunit); transport recepto	99.79
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	99.76
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	99.73
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	99.71
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	99.7
1wa5_C	960	Importin alpha RE-exporter; nuclear transport/comp	99.68
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	99.67
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	99.64
1qgr_A	876	Protein (importin beta subunit); transport recepto	99.63
2x1g_F	971	Cadmus; transport protein, developmental protein,	99.63
2x19_B	963	Importin-13; nuclear transport, protein transport;	99.61
1ibr_B	462	P95, importin beta-1 subunit, nuclear factor; smal	99.6
1ibr_B	462	P95, importin beta-1 subunit, nuclear factor; smal	99.54
4hat_C	1023	Exportin-1; heat repeat, nuclear export, RAN-ranbp	99.53
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	99.5
3m1i_C	1049	Exportin-1; heat repeat, GTP-binding, nucleotide-b	99.44
3ibv_A	980	Exportin-T; karyopherin, heat repeat, cytoplasm, n	99.41
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	99.38
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	99.38
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	99.37
4b8j_A	528	Importin subunit alpha-1A; transport protein, nucl	99.36
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	99.35
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	99.35
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	99.34
2qk1_A	249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	99.28
4b8j_A	528	Importin subunit alpha-1A; transport protein, nucl	99.27
4hxt_A	252	De novo protein OR329; structural genomics, PSI-bi	99.24
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	99.24
4hxt_A	252	De novo protein OR329; structural genomics, PSI-bi	99.24
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	99.23
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	99.22
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	99.2
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	99.18
2vgl_B	591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	99.18
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	99.17
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	99.14
3gjx_A	1073	Exportin-1; transport, cytoplasm, nucleus, RNA-bin	99.1
3tpo_A	529	Importin subunit alpha-2; nuclear import, protein	99.02
1w63_A	618	Adapter-related protein complex 1 gamma 1 subunit;	98.96
3ul1_B	510	Importin subunit alpha-2; arm repeat, armadillo re	98.94
1wa5_C	960	Importin alpha RE-exporter; nuclear transport/comp	98.91
3tpo_A	529	Importin subunit alpha-2; nuclear import, protein	98.9
3ul1_B	510	Importin subunit alpha-2; arm repeat, armadillo re	98.9
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	98.88
2vgl_B	591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	98.87
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	98.84
2x1g_F	971	Cadmus; transport protein, developmental protein,	98.83
2x19_B	963	Importin-13; nuclear transport, protein transport;	98.82
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	98.81
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	98.71
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	98.66
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	98.64
4ffb_C	278	Protein STU2; tubulin fold, heat repeats, cytoskel	98.63
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	98.62
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	98.62
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	98.62
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	98.6
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	98.57
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	98.56
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	98.55
3nmz_A	458	APC variant protein; protein-protein complex, arma	98.55
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	98.52
2vgl_A	621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	98.5
3a6p_A	1204	Exportin-5; exportin-5, RANGTP, nuclearexport, imp	98.48
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	98.45
1w63_A	618	Adapter-related protein complex 1 gamma 1 subunit;	98.41
2vgl_A	621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	98.35
2of3_A	266	ZYG-9; multifunctional macromolecule, kinetochore,	98.34
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	98.29
3m1i_C	1049	Exportin-1; heat repeat, GTP-binding, nucleotide-b	98.17
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	98.17
4ffb_C	278	Protein STU2; tubulin fold, heat repeats, cytoskel	98.12
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	98.07
3nmz_A	458	APC variant protein; protein-protein complex, arma	97.96
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	97.96
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	97.89
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	97.86
3ibv_A	980	Exportin-T; karyopherin, heat repeat, cytoplasm, n	97.84
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	97.78
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	97.74
4hat_C	1023	Exportin-1; heat repeat, nuclear export, RAN-ranbp	97.72
3tjz_B	355	Coatomer subunit gamma; protein trafficking, golgi	97.72
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	97.65
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	97.59
3tjz_B	355	Coatomer subunit gamma; protein trafficking, golgi	97.37
2of3_A	266	ZYG-9; multifunctional macromolecule, kinetochore,	97.36
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	97.31
3oc3_A	800	Helicase MOT1, MOT1; regulation of transcription,	97.27
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	97.25
1lrv_A	244	LRV, leucine-rich repeat variant; leucine-rich rep	97.19
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	97.16
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	97.12
3b2a_A	265	TON_1937, putative uncharacterized protein; heat-r	97.1
4gmo_A	684	Putative uncharacterized protein; ARM, heat, solen	97.01
3oc3_A	800	Helicase MOT1, MOT1; regulation of transcription,	96.9
3gjx_A	1073	Exportin-1; transport, cytoplasm, nucleus, RNA-bin	96.57
1lrv_A	244	LRV, leucine-rich repeat variant; leucine-rich rep	96.57
3l9t_A	240	Putative uncharacterized protein SMU.31; hypotheti	96.38
1vsy_5	997	Proteasome activator BLM10; 20S proteasome BLM10,	96.1
3l9t_A	240	Putative uncharacterized protein SMU.31; hypotheti	96.1
3gs3_A	257	Symplekin, LD45768P; helix-turn-helix heat repeat	96.05
3o2t_A	386	Symplekin; heat repeat, scaffold, protein binding;	95.99
3a6p_A	1204	Exportin-5; exportin-5, RANGTP, nuclearexport, imp	95.88
3grl_A	651	General vesicular transport factor P115; vesicle t	95.71
3b2a_A	265	TON_1937, putative uncharacterized protein; heat-r	95.68
1vsy_4	799	Proteasome activator BLM10; 20S proteasome BLM10,	94.85
4gmo_A	684	Putative uncharacterized protein; ARM, heat, solen	93.68
4atg_A	196	TAF6; transcription, TFIID; HET: NHE; 1.89A {Anton	91.74
1lsh_A	1056	Lipovitellin (LV-1N, LV-1C); vitellogenin, lipopro	91.1
4atg_A	196	TAF6; transcription, TFIID; HET: NHE; 1.89A {Anton	89.57
1lsh_A	1056	Lipovitellin (LV-1N, LV-1C); vitellogenin, lipopro	88.9
1vsy_4	799	Proteasome activator BLM10; 20S proteasome BLM10,	86.76
1upk_A	341	MO25 protein; transferase, armadillo; HET: MSE; 1.	86.72
3grl_A	651	General vesicular transport factor P115; vesicle t	86.24
3u0r_A	507	Apoptosis inhibitor 5; heat repeat, armadillo repe	86.04
1vsy_5	997	Proteasome activator BLM10; 20S proteasome BLM10,	80.65

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*

Probab=99.86  E-value=1.9e-20  Score=214.34  Aligned_cols=256  Identities=17%  Similarity=0.140  Sum_probs=208.4

Q ss_pred             hHHHHHHHHHHHHHhCCcCcHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccchhhHHHHHHHHHhhccCCChhH
Q 046417           35 TLPVATAELESIARTLTQDSFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPHLSKMISTVSCRLRDPDSSV  114 (595)
Q Consensus        35 T~r~A~~~LD~lA~~L~~~~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~PhLpkIL~~IvrrLkD~ds~V  114 (595)
                      .++.|+..|+.++..++.+.++.+++.|.+...+++|.+|++++.+||.+++++++.+.||++.+++.+++.|+|+++.|
T Consensus       337 vr~~a~~~L~~la~~~~~~~~~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~l~d~~~~V  416 (852)
T 4fdd_A          337 LRKCSAAALDVLANVYRDELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALV  416 (852)
T ss_dssp             HHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHHHHTTCSSHHH
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHcCCCCHHH
Confidence            37899999999999998777999999999888888999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhhhcCCcchhccHHHHHHHh---hcCChhHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhccCc
Q 046417          115 RSACVAATTAMSLNITKPSFSVLSKPLIELIL---VEQDVNSQVGGAMCLAAAIDAAPNPEVEQLRKLLPRLGKAVRIEG  191 (595)
Q Consensus       115 R~Ac~~aLg~LA~~l~~~~~~~~l~PLi~aLl---~d~nk~VQ~~AA~cLaaviE~a~d~~~~~L~~Ll~rL~klL~~~~  191 (595)
                      |.+|+|++|+|+.++.......++.+++..|+   .+.++.|+..|+.||..+++..+..+.+|++.|++.|..+++...
T Consensus       417 r~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~~~l~~~l~~ll~~L~~~l~~~~  496 (852)
T 4fdd_A          417 RSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKYQ  496 (852)
T ss_dssp             HHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhHhhHhHHHHHHHHHHHHHHHhC
Confidence            99999999999998753222224444444433   578899999999999999999777778999999999999998776


Q ss_pred             hhHHHHHHHHHHHHHHhhcccC--cCcHHhHHHHHHHhc---cCCCHHHHHHHHHHHHHHHHHhHHhHHHHHHH----HH
Q 046417          192 FKAKAAVLGVIGSVVRVGGARS--KGVLDWLVPCLVEFL---CCDDWATRKAAAEVLGKVAVFDKDLATEYKRS----CL  262 (595)
Q Consensus       192 ~kaK~alLsAIgSlA~a~g~~~--~~yl~~lmp~L~e~L---~~dDW~~RkaAaEaLgsIA~avge~f~py~~~----~I  262 (595)
                      .+....++++|++++.+.|..+  .+|++.+||.|.+.|   .+++...| .+++||+.|+.++|..|.||.+.    |+
T Consensus       497 ~~~~~~~~~ai~~l~~~~~~~~~~~~~~~~l~p~l~~~~~~l~d~~~~~~-~~~~~l~~i~~~~g~~~~~~~~~i~~~~~  575 (852)
T 4fdd_A          497 HKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLF-PLLECLSSVATALQSGFLPYCEPVYQRCV  575 (852)
T ss_dssp             HHHHHHHHHHHHHHHHHHGGGGCCHHHHHHHHHHHHHHHHHSCTTCTTHH-HHHHHHHHHHHHHGGGGHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHhcccccHHHH-HHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence            6666778899999998776543  469999999999665   45665665 89999999999999988888765    45


Q ss_pred             HHHHhc------------cCCc-hHHHHHHHHHHHHHhHhcC
Q 046417          263 AALETR------------RFDK-VKIVRETMNRSLEMWKEVP  291 (595)
Q Consensus       263 ~~Le~c------------rfDK-VK~VRda~~~aL~~~K~i~  291 (595)
                      ..|+.+            .++. -+.+|..+..+|..+-+.-
T Consensus       576 ~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~~l~~l~~l~~~l  617 (852)
T 4fdd_A          576 NLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGL  617 (852)
T ss_dssp             HHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhcCCcccCCCcchHHHHHHHHHHHHHHHH
Confidence            566654            2221 1346666666666555433

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}

Probab=99.82  E-value=5.7e-20  Score=180.50  Aligned_cols=199  Identities=17%  Similarity=0.164  Sum_probs=167.8

Q ss_pred             HHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccchhhHHHHHHHHHhhc-cCCChhHHHHHHHHHHHhhhhhcCC-
Q 046417           55 FSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPHLSKMISTVSCRL-RDPDSSVRSACVAATTAMSLNITKP-  132 (595)
Q Consensus        55 lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~PhLpkIL~~IvrrL-kD~ds~VR~Ac~~aLg~LA~~l~~~-  132 (595)
                      +..+-+.|.+...+.+|..|++++..|+.++++|++.+.+++.++++.+.++| +|+++.||.+++.+++.|+..+... 
T Consensus        13 ~~~l~~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~   92 (242)
T 2qk2_A           13 LSKMPKDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRF   92 (242)
T ss_dssp             GGGSCTTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGG
T ss_pred             cccCCHHHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhH
Confidence            44444455555667889999999999999999998777777899999999999 5999999999999999999877431 


Q ss_pred             -cch-hccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHhhc
Q 046417          133 -SFS-VLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNPEVEQLRKLLPRLGKAVRIEGFKAKAAVLGVIGSVVRVGG  210 (595)
Q Consensus       133 -~~~-~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d~~~~~L~~Ll~rL~klL~~~~~kaK~alLsAIgSlA~a~g  210 (595)
                       +.. .++++|++.| +|+++.|+.+|+.||.++++..+      +..+++.|...|++.+.++|..++..|+.++...+
T Consensus        93 ~~~~~~ilp~ll~~l-~d~~~~vr~~a~~aL~~~~~~~~------~~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~  165 (242)
T 2qk2_A           93 SNYASACVPSLLEKF-KEKKPNVVTALREAIDAIYASTS------LEAQQESIVESLSNKNPSVKSETALFIARALTRTQ  165 (242)
T ss_dssp             HHHHHHHHHHHHHGG-GCCCHHHHHHHHHHHHHHHTTSC------HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHcCC------HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcC
Confidence             111 2666677766 78899999999999999998652      57899999999999999999999999999776543


Q ss_pred             --ccCcCcHHhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhHH-hHHHHHHH
Q 046417          211 --ARSKGVLDWLVPCLVEFLCCDDWATRKAAAEVLGKVAVFDKD-LATEYKRS  260 (595)
Q Consensus       211 --~~~~~yl~~lmp~L~e~L~~dDW~~RkaAaEaLgsIA~avge-~f~py~~~  260 (595)
                        ..+.+|++.+||.|.++|.|.+|.+|.+|++||+.|+.++|+ .|.+|.+.
T Consensus       166 ~~~~~~~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~vg~~~~~~~l~~  218 (242)
T 2qk2_A          166 PTALNKKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLMGDKAVTPLLAD  218 (242)
T ss_dssp             GGGCCHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHCHHHHGGGGTT
T ss_pred             CCCccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcCHHHHHHHHHh
Confidence              346789999999999999999999999999999999999985 57777654

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A

Probab=99.82  E-value=7.4e-19  Score=198.19  Aligned_cols=255  Identities=9%  Similarity=0.034  Sum_probs=207.7

Q ss_pred             hHHHHHHHHHHHHHhCCcCcHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHcc-ccchhhHHHHHHHHHhhccCCChh
Q 046417           35 TLPVATAELESIARTLTQDSFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHG-DSLSPHLSKMISTVSCRLRDPDSS  113 (595)
Q Consensus        35 T~r~A~~~LD~lA~~L~~~~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~g-d~I~PhLpkIL~~IvrrLkD~ds~  113 (595)
                      .++.|...|+.++..++...++.+++.|.+...+.+|.+|++++.+||.++++++ +.+.+|++.|++.+++.++|+++.
T Consensus       347 ~r~~a~~~L~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~il~~l~~~l~d~~~~  426 (861)
T 2bpt_A          347 VSMSAGACLQLFAQNCGNHILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQ  426 (861)
T ss_dssp             HHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHGGGCSCHH
T ss_pred             HHHHHHHHHHHHHHHccHhHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCcHH
Confidence            5678999999999999877799999999988888899999999999999999997 888999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhhhcCC----cch-hccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCC----CchHHHHHHHHHHHH
Q 046417          114 VRSACVAATTAMSLNITKP----SFS-VLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAP----NPEVEQLRKLLPRLG  184 (595)
Q Consensus       114 VR~Ac~~aLg~LA~~l~~~----~~~-~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~----d~~~~~L~~Ll~rL~  184 (595)
                      ||.+++|++|+++.++...    ... .++++|+..| .+. +.|+..||.+|..+++...    ..+.+|++.|++.|.
T Consensus       427 vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~l-~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~  504 (861)
T 2bpt_A          427 VKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGL-QDH-PKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLI  504 (861)
T ss_dssp             HHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHH-TSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHh-ccC-hHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHH
Confidence            9999999999999987421    111 2555566665 454 8899999999999999854    445689999999999


Q ss_pred             HhhccC--chhHHHHHHHHHHHHHHhhcccCcCcHHhHHHHHHHhccC---------------CCHHHHHHHHHHHHHHH
Q 046417          185 KAVRIE--GFKAKAAVLGVIGSVVRVGGARSKGVLDWLVPCLVEFLCC---------------DDWATRKAAAEVLGKVA  247 (595)
Q Consensus       185 klL~~~--~~kaK~alLsAIgSlA~a~g~~~~~yl~~lmp~L~e~L~~---------------dDW~~RkaAaEaLgsIA  247 (595)
                      +++++.  ...+|.+++.+++.++...+..+.+|+..++|.+.+.|.+               ....+|..++++|+.|+
T Consensus       505 ~~l~~~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~  584 (861)
T 2bpt_A          505 GAANRIDNEFNARASAFSALTTMVEYATDTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVI  584 (861)
T ss_dssp             HHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhCcCcchHHHHHHHHHHHHHHHHcchhhHHHHHHHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHH
Confidence            999853  3678999999999999987776788999999999888752               24568899999999999


Q ss_pred             HHhHHhHHHHHHHHHHHHHhccCCchH-HHHHHHHHHHHHhHhcC
Q 046417          248 VFDKDLATEYKRSCLAALETRRFDKVK-IVRETMNRSLEMWKEVP  291 (595)
Q Consensus       248 ~avge~f~py~~~~I~~Le~crfDKVK-~VRda~~~aL~~~K~i~  291 (595)
                      ..+|+.+.||.+.+++.+...--+.-. .||+.+..++..+-...
T Consensus       585 ~~~~~~~~~~~~~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~  629 (861)
T 2bpt_A          585 RKSPSSVEPVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASL  629 (861)
T ss_dssp             HHCGGGTGGGHHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHH
T ss_pred             HHhhhhhHHHHHHHHHHHHHHHccCCCCcHHHHHHHHHHHHHHHH
Confidence            999987777776655543322112223 68888888877665543

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}

Probab=99.81  E-value=2e-19  Score=180.27  Aligned_cols=197  Identities=12%  Similarity=0.068  Sum_probs=168.8

Q ss_pred             hhcCCCCChHHHHHHHHHHHH-HHHHccccc--hhhHHHHHHHHHhhc-cCCChhHHHHHHHHHHHhhhhhcCCcch-h-
Q 046417           63 QTTDSSSKSPVRKQCVNLLTL-LSRSHGDSL--SPHLSKMISTVSCRL-RDPDSSVRSACVAATTAMSLNITKPSFS-V-  136 (595)
Q Consensus        63 ~d~~ss~kp~vRKaaI~lLG~-lAEg~gd~I--~PhLpkIL~~IvrrL-kD~ds~VR~Ac~~aLg~LA~~l~~~~~~-~-  136 (595)
                      .+..++.+|..|++++..|+. ++++|++.+  ..++.+++..+.+.| +|++..||.+++.+||+|+..+..+.+. . 
T Consensus        22 ~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~y  101 (249)
T 2qk1_A           22 QERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKDY  101 (249)
T ss_dssp             HHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHHH
T ss_pred             HHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHHH
Confidence            334456799999999999999 999999887  566678999999999 8999999999999999999988511222 2 


Q ss_pred             ---ccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCCCch-HHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHhhcc-
Q 046417          137 ---LSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNPE-VEQLRKLLPRLGKAVRIEGFKAKAAVLGVIGSVVRVGGA-  211 (595)
Q Consensus       137 ---~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d~~-~~~L~~Ll~rL~klL~~~~~kaK~alLsAIgSlA~a~g~-  211 (595)
                         ++++|++.+ ++..+.|+.++..||.++++..+... .+|++.++++|+..|++++.++|.+++.+|+.++...+. 
T Consensus       102 ~~~llp~ll~~l-~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~~  180 (249)
T 2qk1_A          102 VSLVFTPLLDRT-KEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDG  180 (249)
T ss_dssp             HHHHHHHHHHGG-GCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCSC
T ss_pred             HHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCc
Confidence               566677666 78889999999999999999864422 235999999999999999999999999999999987763 


Q ss_pred             --cCcCcH-HhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhHH-hHHHHHHH
Q 046417          212 --RSKGVL-DWLVPCLVEFLCCDDWATRKAAAEVLGKVAVFDKD-LATEYKRS  260 (595)
Q Consensus       212 --~~~~yl-~~lmp~L~e~L~~dDW~~RkaAaEaLgsIA~avge-~f~py~~~  260 (595)
                        .+.+|+ +.+||.|.+++.+.+-.+|.+|++||+.|+.++|+ .|.||.+.
T Consensus       181 ~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~vG~~~~~p~l~~  233 (249)
T 2qk1_A          181 YSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGMNTFVKTLEH  233 (249)
T ss_dssp             SHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCSGGGHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCHHHHHHHHHH
Confidence              366899 99999999999999999999999999999999995 68888766

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A

Probab=99.79  E-value=3.3e-18  Score=193.25  Aligned_cols=256  Identities=11%  Similarity=0.060  Sum_probs=197.9

Q ss_pred             hHHHHHHHHHHHHHhCCcCcHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHcc-ccchhhHHHHHHHHHhhccCCChh
Q 046417           35 TLPVATAELESIARTLTQDSFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHG-DSLSPHLSKMISTVSCRLRDPDSS  113 (595)
Q Consensus        35 T~r~A~~~LD~lA~~L~~~~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~g-d~I~PhLpkIL~~IvrrLkD~ds~  113 (595)
                      .++.|+..|..++..++...++.+++.|.+...+.+|.+|++++.+||.++++++ +.+.+|++.+++.+++.|+|+++.
T Consensus       344 ~r~~a~~~l~~l~~~~~~~~~~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~  423 (876)
T 1qgr_A          344 PCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVV  423 (876)
T ss_dssp             HHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCSSHH
T ss_pred             HHHHHHHHHHHHHHHCcHhhHHHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCCHH
Confidence            6778999999999999866799999999888888899999999999999999998 778899999999999999999999


Q ss_pred             HHHHHHHHHHHhhhhhcCCc-chhccHHHHHHHh---hcCChhHHHHHHHHHHHHHhcCC--------------CchHHH
Q 046417          114 VRSACVAATTAMSLNITKPS-FSVLSKPLIELIL---VEQDVNSQVGGAMCLAAAIDAAP--------------NPEVEQ  175 (595)
Q Consensus       114 VR~Ac~~aLg~LA~~l~~~~-~~~~l~PLi~aLl---~d~nk~VQ~~AA~cLaaviE~a~--------------d~~~~~  175 (595)
                      ||.+|++++|+|+.++.... ...++.+++..|+   .+ ++.|+..|+.||..+++...              ..+.+|
T Consensus       424 vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~-~~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~  502 (876)
T 1qgr_A          424 VRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSA-EPRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSS  502 (876)
T ss_dssp             HHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTS-CHHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTT
T ss_pred             HHHHHHHHHHHHHHhCchhcccHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHhhhccccccccccccchhhhHh
Confidence            99999999999999874311 1124444444443   34 48899999999999998743              335689


Q ss_pred             HHHHHHHHHHhhccC---chhHHHHHHHHHHHHH----------------------------------------------
Q 046417          176 LRKLLPRLGKAVRIE---GFKAKAAVLGVIGSVV----------------------------------------------  206 (595)
Q Consensus       176 L~~Ll~rL~klL~~~---~~kaK~alLsAIgSlA----------------------------------------------  206 (595)
                      ++.|++.|..++...   ...+|..++++++.++                                              
T Consensus       503 ~~~il~~L~~~l~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~  582 (876)
T 1qgr_A          503 FELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQS  582 (876)
T ss_dssp             HHHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCcCcchhhHHHHHHHHHHHHHHHCchhhHHHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHH
Confidence            999999999998754   2334444444444443                                              


Q ss_pred             ----------Hhhc-ccCcCcHHhHHHHHHHhccCCC--HHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHhccCCc-
Q 046417          207 ----------RVGG-ARSKGVLDWLVPCLVEFLCCDD--WATRKAAAEVLGKVAVFDKDLATEYKRSCLAALETRRFDK-  272 (595)
Q Consensus       207 ----------~a~g-~~~~~yl~~lmp~L~e~L~~dD--W~~RkaAaEaLgsIA~avge~f~py~~~~I~~Le~crfDK-  272 (595)
                                ...+ ..+.+|++.+||.|...+.+..  |.+|..++.+|+.|+...|..|.+|.+.+++.|..+--|. 
T Consensus       583 ~~~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~  662 (876)
T 1qgr_A          583 LLCATLQNVLRKVQHQDALQISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYMEAFKPFLGIGLKNYA  662 (876)
T ss_dssp             HHHHHHHHHHTTSCHHHHHTTHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHhChhhhhHHHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCcc
Confidence                      3333 4456888889999999887654  6899999999999999999888888877777655543344 


Q ss_pred             hHHHHHHHHHHHHHhHhcC
Q 046417          273 VKIVRETMNRSLEMWKEVP  291 (595)
Q Consensus       273 VK~VRda~~~aL~~~K~i~  291 (595)
                      ...||.++..+|..+-...
T Consensus       663 ~~~vr~~a~~~l~~l~~~~  681 (876)
T 1qgr_A          663 EYQVCLAAVGLVGDLCRAL  681 (876)
T ss_dssp             THHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHH
Confidence            5679998888877665433

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A

Probab=99.76  E-value=3.8e-17  Score=175.81  Aligned_cols=266  Identities=14%  Similarity=0.111  Sum_probs=203.1

Q ss_pred             HHHHHHHHHhhhc-CCCC--hHHHHHHHHHHHHHhCCcCc-HHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccch
Q 046417           18 DLKQRVITCLNKL-ADRD--TLPVATAELESIARTLTQDS-FSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLS   93 (595)
Q Consensus        18 ~lk~rvl~~L~KL-~DrD--T~r~A~~~LD~lA~~L~~~~-lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~   93 (595)
                      .....++..|.++ .|.+  .++.|+..|..++..++++. .+.+++.+.....++++.+|++++.+||.+++.++....
T Consensus       238 ~~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~  317 (588)
T 1b3u_A          238 DLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCR  317 (588)
T ss_dssp             HHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCHHHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTH
T ss_pred             HHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCcccchhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhhh
Confidence            3445566666655 4555  57889999999998876543 344455555544556799999999999999999986554


Q ss_pred             --hhHHHHHHHHHhhccCCChhHHHHHHHHHHHhhhhhcCCcchhccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCCCc
Q 046417           94 --PHLSKMISTVSCRLRDPDSSVRSACVAATTAMSLNITKPSFSVLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNP  171 (595)
Q Consensus        94 --PhLpkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~~~~~~~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d~  171 (595)
                        ++++.++|++.+.++|+++.||.+++++|+.++..+.+......+.|++..++.+.++.|+.+++.+|..+++..+. 
T Consensus       318 ~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~-  396 (588)
T 1b3u_A          318 ENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGI-  396 (588)
T ss_dssp             HHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCHHHHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCH-
T ss_pred             hhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcCH-
Confidence              78999999999999999999999999999999988753222235667666666888899999999999999887543 


Q ss_pred             hHHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHhhcccCcCcHHhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhH
Q 046417          172 EVEQLRKLLPRLGKAVRIEGFKAKAAVLGVIGSVVRVGGARSKGVLDWLVPCLVEFLCCDDWATRKAAAEVLGKVAVFDK  251 (595)
Q Consensus       172 ~~~~L~~Ll~rL~klL~~~~~kaK~alLsAIgSlA~a~g~~~~~yl~~lmp~L~e~L~~dDW~~RkaAaEaLgsIA~avg  251 (595)
                       ..+.+.++|.|.+++++++..+|.+++.+++.++...+..  .+.+.++|.+...+.+++|.+|.+|+.+|+.++...|
T Consensus       397 -~~~~~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~  473 (588)
T 1b3u_A          397 -RQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVE--FFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFG  473 (588)
T ss_dssp             -HHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGG--GCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHC
T ss_pred             -HHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHcCHH--HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhC
Confidence             2356778888889998888899999999999988765543  2336788999999999999999999999999988887


Q ss_pred             HhHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHhHh
Q 046417          252 DLATEYKRSCLAALETRRFDKVKIVRETMNRSLEMWKE  289 (595)
Q Consensus       252 e~f~py~~~~I~~Le~crfDKVK~VRda~~~aL~~~K~  289 (595)
                      ..+  +...+++.|..+..|.-..||.++..++..+-.
T Consensus       474 ~~~--~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~  509 (588)
T 1b3u_A          474 KEW--AHATIIPKVLAMSGDPNYLHRMTTLFCINVLSE  509 (588)
T ss_dssp             HHH--HHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHH
T ss_pred             chh--HHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHH
Confidence            532  244555566566667777888888877776644

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A

Probab=99.73  E-value=4.7e-17  Score=175.11  Aligned_cols=247  Identities=18%  Similarity=0.186  Sum_probs=160.3

Q ss_pred             HHHHHHHHHHHHhCCcCc-HHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccchhhHHHHHHHHHhhccCCChhHH
Q 046417           37 PVATAELESIARTLTQDS-FSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPHLSKMISTVSCRLRDPDSSVR  115 (595)
Q Consensus        37 r~A~~~LD~lA~~L~~~~-lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~PhLpkIL~~IvrrLkD~ds~VR  115 (595)
                      ..|+..|..++..++++. .+.+++.|.....+++|.+|++++.+||.+++.++..  .+.+.+++.+++.++|+++.||
T Consensus       221 ~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d~~~~vr  298 (588)
T 1b3u_A          221 LLAVEACVNIAQLLPQEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPE--ITKTDLVPAFQNLMKDCEAEVR  298 (588)
T ss_dssp             TTHHHHHHHHHHHSCHHHHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCHH--HHHHTHHHHHHHHHTCSSHHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCcc--cchhHHHHHHHHHhCCCcHHHH
Confidence            345556666666555432 3334444444444455666666666666666665432  2345566666667777777777


Q ss_pred             HHHHHHHHHhhhhhcCC----cchhccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhccCc
Q 046417          116 SACVAATTAMSLNITKP----SFSVLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNPEVEQLRKLLPRLGKAVRIEG  191 (595)
Q Consensus       116 ~Ac~~aLg~LA~~l~~~----~~~~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d~~~~~L~~Ll~rL~klL~~~~  191 (595)
                      .+|+++++.++..+...    .....+.|.+..++.+.+..|..+++.+|..+.+..+..  ..++.++|-|..+|+++.
T Consensus       299 ~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~--~~~~~l~p~l~~~l~d~~  376 (588)
T 1b3u_A          299 AAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKD--NTIEHLLPLFLAQLKDEC  376 (588)
T ss_dssp             HHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCHH--HHHHHTHHHHHHHHTCSC
T ss_pred             HHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhHh--HHHHHHHHHHHHHhCCCc
Confidence            77777777776655322    111233344444445666666666666666665543321  234567788888888877


Q ss_pred             hhHHHHHHHHHHHHHHhhcccCcCcHHhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhHH-hHHHHHHHHHHHHHhccC
Q 046417          192 FKAKAAVLGVIGSVVRVGGARSKGVLDWLVPCLVEFLCCDDWATRKAAAEVLGKVAVFDKD-LATEYKRSCLAALETRRF  270 (595)
Q Consensus       192 ~kaK~alLsAIgSlA~a~g~~~~~yl~~lmp~L~e~L~~dDW~~RkaAaEaLgsIA~avge-~f~py~~~~I~~Le~crf  270 (595)
                      ..+|.+++.+++.+....+..  .+.+.++|.|.+++.+.+|.+|.+++++|+.++..+|. .+.+   .+++.|..+--
T Consensus       377 ~~Vr~~a~~~l~~l~~~~~~~--~~~~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~---~l~~~l~~~l~  451 (588)
T 1b3u_A          377 PEVRLNIISNLDCVNEVIGIR--QLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDE---KLNSLCMAWLV  451 (588)
T ss_dssp             HHHHHHHHTTCHHHHHHSCHH--HHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGGGCCH---HHHHHHHHGGG
T ss_pred             hHHHHHHHHHHHHHHHhcCHH--HHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHcCHHHHHH---HHHHHHHHHhc
Confidence            788888888888777644322  24577899999999999999999999999999999874 4433   34445555555


Q ss_pred             CchHHHHHHHHHHHHHhHhcCC
Q 046417          271 DKVKIVRETMNRSLEMWKEVPG  292 (595)
Q Consensus       271 DKVK~VRda~~~aL~~~K~i~~  292 (595)
                      |+...||+++..+|..+-...+
T Consensus       452 d~~~~Vr~~a~~~l~~l~~~~~  473 (588)
T 1b3u_A          452 DHVYAIREAATSNLKKLVEKFG  473 (588)
T ss_dssp             CSSHHHHHHHHHHHHHHHHHHC
T ss_pred             CCcHHHHHHHHHHHHHHHHHhC
Confidence            8999999999999988766543

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A

Probab=99.71  E-value=8.5e-16  Score=173.26  Aligned_cols=263  Identities=13%  Similarity=0.081  Sum_probs=209.5

Q ss_pred             hhcCCCC--hHHHHHHHHHHHHHhCC-----cCcHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHcc----ccchhhH
Q 046417           28 NKLADRD--TLPVATAELESIARTLT-----QDSFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHG----DSLSPHL   96 (595)
Q Consensus        28 ~KL~DrD--T~r~A~~~LD~lA~~L~-----~~~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~g----d~I~PhL   96 (595)
                      ..|.|.+  -+..|+..|-.++..++     ...++.+++.|.....+. +.+|.+++.+|+.++++++    +.+.||+
T Consensus       418 ~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~  496 (861)
T 2bpt_A          418 NLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFY  496 (861)
T ss_dssp             HGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGH
T ss_pred             HHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHH
Confidence            3445655  35567778888887764     234777777777666544 8999999999999999986    6788999


Q ss_pred             HHHHHHHHhhccCC--ChhHHHHHHHHHHHhhhhhcCC--cch-hccHHHHHHHhh--------------cCChhHHHHH
Q 046417           97 SKMISTVSCRLRDP--DSSVRSACVAATTAMSLNITKP--SFS-VLSKPLIELILV--------------EQDVNSQVGG  157 (595)
Q Consensus        97 pkIL~~IvrrLkD~--ds~VR~Ac~~aLg~LA~~l~~~--~~~-~~l~PLi~aLl~--------------d~nk~VQ~~A  157 (595)
                      +.|++.+++.++++  ++.||.+++++++.++......  +.. .++++++..|..              +....++..+
T Consensus       497 ~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~  576 (861)
T 2bpt_A          497 PALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNI  576 (861)
T ss_dssp             HHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcchhhHHHHHHHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHH
Confidence            99999999999854  4789999999999999877432  111 255666666632              1134577889


Q ss_pred             HHHHHHHHhcCCCchHHHHHHHHHHHHHhhccCch-hHHHHHHHHHHHHHHhhcccCcCcHHhHHHHHHHhccCCCHHHH
Q 046417          158 AMCLAAAIDAAPNPEVEQLRKLLPRLGKAVRIEGF-KAKAAVLGVIGSVVRVGGARSKGVLDWLVPCLVEFLCCDDWATR  236 (595)
Q Consensus       158 A~cLaaviE~a~d~~~~~L~~Ll~rL~klL~~~~~-kaK~alLsAIgSlA~a~g~~~~~yl~~lmp~L~e~L~~dDW~~R  236 (595)
                      +.||..+++..+....+|++.+++.+..+++.... .++..++.+++.++.+.+..+.+|++.++|.|.+.|.++++.+|
T Consensus       577 ~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~vr  656 (861)
T 2bpt_A          577 LTVLAAVIRKSPSSVEPVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLETFSPYLLKALNQVDSPVS  656 (861)
T ss_dssp             HHHHHHHHHHCGGGTGGGHHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHCTTSHHH
T ss_pred             HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHccCCCCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccHHHH
Confidence            99999999998777779999999999999988766 78889999999999988888899999999999999998999999


Q ss_pred             HHHHHHHHHHHHHhHHhHHHHHHHHHHHHHhccCCc-h-HHHHHHHHHHHHHhHhcC
Q 046417          237 KAAAEVLGKVAVFDKDLATEYKRSCLAALETRRFDK-V-KIVRETMNRSLEMWKEVP  291 (595)
Q Consensus       237 kaAaEaLgsIA~avge~f~py~~~~I~~Le~crfDK-V-K~VRda~~~aL~~~K~i~  291 (595)
                      ..|+.+|+.|+..+|+.|.+|...++..+-.+--|. . ..||..+..+|..+-...
T Consensus       657 ~~a~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~~  713 (861)
T 2bpt_A          657 ITAVGFIADISNSLEEDFRRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNI  713 (861)
T ss_dssp             HHHHHHHHHHHHHTGGGGHHHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhchhccchHHHHHHHHHHHhCCccccHhhhHHHHHHHHHHHHHh
Confidence            999999999999999989999888877755443232 1 578988888886665443

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A

Probab=99.70  E-value=1.2e-16  Score=189.85  Aligned_cols=266  Identities=14%  Similarity=0.127  Sum_probs=211.6

Q ss_pred             HHHHHHhhhcC--CCChHHHHHHHHHHHHHh----CCcCcHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccchh
Q 046417           21 QRVITCLNKLA--DRDTLPVATAELESIART----LTQDSFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSP   94 (595)
Q Consensus        21 ~rvl~~L~KL~--DrDT~r~A~~~LD~lA~~----L~~~~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~P   94 (595)
                      +.+.+.|.++.  |.|.++.|...|....+.    +++.....+++.|.+...+.+|.+|++++.+|+.+++++++   +
T Consensus         6 ~~l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~---~   82 (1230)
T 1u6g_C            6 YHISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKE---Y   82 (1230)
T ss_dssp             HHHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCH---H
T ss_pred             hHHHHHHHhcCCCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCH---H
Confidence            45678888885  555888898888775432    22333556666666666667899999999999999999887   7


Q ss_pred             hHHHHHHHHHhhccCCChhHHHHHHHHHHHhhhhhcCCc--------ch-hccHHHHHHHhh-cCChhHHHHHHHHHHHH
Q 046417           95 HLSKMISTVSCRLRDPDSSVRSACVAATTAMSLNITKPS--------FS-VLSKPLIELILV-EQDVNSQVGGAMCLAAA  164 (595)
Q Consensus        95 hLpkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~~~~--------~~-~~l~PLi~aLl~-d~nk~VQ~~AA~cLaav  164 (595)
                      +++.|++.++..|.|+++.||.+++.+|+.++..+....        .. .+++.|+..| . ..+..++.+|..+|..+
T Consensus        83 ~~~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l-~~~~~~~~~~~al~~l~~~  161 (1230)
T 1u6g_C           83 QVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAI-AKQEDVSVQLEALDIMADM  161 (1230)
T ss_dssp             HHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHH-SCCSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHH-cCCCchHHHHHHHHHHHHH
Confidence            899999999999999999999999999999998875320        11 2666677777 4 36788999999999999


Q ss_pred             HhcCCCchHHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHhhcccCcCcHHhHHHHHHHhccCC-CHHHHHHHHHHH
Q 046417          165 IDAAPNPEVEQLRKLLPRLGKAVRIEGFKAKAAVLGVIGSVVRVGGARSKGVLDWLVPCLVEFLCCD-DWATRKAAAEVL  243 (595)
Q Consensus       165 iE~a~d~~~~~L~~Ll~rL~klL~~~~~kaK~alLsAIgSlA~a~g~~~~~yl~~lmp~L~e~L~~d-DW~~RkaAaEaL  243 (595)
                      ++..+..+.+|++.+++.|...|.++...+|..++.+|+.++...+..+   ++.+||.|.+.|.++ +|.+|..++++|
T Consensus       162 ~~~~~~~l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~~---~~~~l~~l~~~L~~~~~~~~r~~a~~~l  238 (1230)
T 1u6g_C          162 LSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIV---FVDLIEHLLSELSKNDSMSTTRTYIQCI  238 (1230)
T ss_dssp             HHHTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC-------CTTHHHHHHHHHHHTCSSCSCTTHHHHH
T ss_pred             HHHhHhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHHH---HHHHHHHHHHHhccCCchhHHHHHHHHH
Confidence            9887766778999999999999999988999999999999987655432   566778888777644 468899999999


Q ss_pred             HHHHHHhHHhHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHhHhcCCC
Q 046417          244 GKVAVFDKDLATEYKRSCLAALETRRFDKVKIVRETMNRSLEMWKEVPGV  293 (595)
Q Consensus       244 gsIA~avge~f~py~~~~I~~Le~crfDKVK~VRda~~~aL~~~K~i~~~  293 (595)
                      +.|+..+|+.|.+|...+++.+-..--|.-..||+++.+++..|-...+.
T Consensus       239 ~~l~~~~~~~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~  288 (1230)
T 1u6g_C          239 AAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPK  288 (1230)
T ss_dssp             HHHHHHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHChH
Confidence            99999999888888877777765555577888999999999998876543

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A

Probab=99.68  E-value=6.7e-16  Score=179.99  Aligned_cols=233  Identities=10%  Similarity=0.080  Sum_probs=176.4

Q ss_pred             hHHHHHHHHHHHHHhCCcCcHHHHHHhhhhcCC------CCChHHHHHHHHHHHHHHHH---ccccchh-----hHHHH-
Q 046417           35 TLPVATAELESIARTLTQDSFSSFLNCLQTTDS------SSKSPVRKQCVNLLTLLSRS---HGDSLSP-----HLSKM-   99 (595)
Q Consensus        35 T~r~A~~~LD~lA~~L~~~~lp~fL~~L~d~~s------s~kp~vRKaaI~lLG~lAEg---~gd~I~P-----hLpkI-   99 (595)
                      .+++|...|+.++..++...++++++.+.+...      +.+|..|++++.+||.++++   +.+.+..     .+..+ 
T Consensus       377 ~R~aa~~~L~~l~~~~~~~v~~~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l  456 (960)
T 1wa5_C          377 RRRACTDFLKELKEKNEVLVTNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFF  456 (960)
T ss_dssp             HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHH
T ss_pred             cHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHH
Confidence            677889999999999986568888888766554      67899999999999999986   3223332     44444 


Q ss_pred             HHHHHhhccCC---ChhHHHHHHHHHHHhhhhhcCCcchhccHHHHHHHh---hcCChhHHHHHHHHHHHHHhcC-----
Q 046417          100 ISTVSCRLRDP---DSSVRSACVAATTAMSLNITKPSFSVLSKPLIELIL---VEQDVNSQVGGAMCLAAAIDAA-----  168 (595)
Q Consensus       100 L~~IvrrLkD~---ds~VR~Ac~~aLg~LA~~l~~~~~~~~l~PLi~aLl---~d~nk~VQ~~AA~cLaaviE~a-----  168 (595)
                      +.+++..|+|+   .+.||.+|||++|++++|+.  +  .++.+++.+|+   .+.++.|+..||.||..+++..     
T Consensus       457 ~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~--~--~~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~  532 (960)
T 1wa5_C          457 TKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLT--K--AQLIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTS  532 (960)
T ss_dssp             HHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSC--H--HHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSS
T ss_pred             HHHhHHHhcCCCCCCceehHHHHHHHHHHHhhCC--H--HHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhccccccc
Confidence            44677788898   89999999999999999973  2  24444444443   4678999999999999999852     


Q ss_pred             ------CCchHHHHHHHHHHHHHhhccC-----chhHHHHHHHHHHHHHHhhcccCcCcHHhHHHHHHHhcc-----CCC
Q 046417          169 ------PNPEVEQLRKLLPRLGKAVRIE-----GFKAKAAVLGVIGSVVRVGGARSKGVLDWLVPCLVEFLC-----CDD  232 (595)
Q Consensus       169 ------~d~~~~~L~~Ll~rL~klL~~~-----~~kaK~alLsAIgSlA~a~g~~~~~yl~~lmp~L~e~L~-----~dD  232 (595)
                            .+.+.||++.|+++|+++++..     .......++.+|++++.+.+..+.||++.+|+.|...|.     .++
T Consensus       533 ~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p~~~~l~~~L~~~l~~~~~~~~~  612 (960)
T 1wa5_C          533 PAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFPQLLAQFIEIVTIMAKNPSN  612 (960)
T ss_dssp             CCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHHHHHHHHHHHHHHHTTSCCC
T ss_pred             ccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCCC
Confidence                  2335689999999999999774     122346889999999998888889999999999998874     356


Q ss_pred             HHHHHHHHHHHHHHHHHhH-HhHHHHHHHHH----HHHHhccCC
Q 046417          233 WATRKAAAEVLGKVAVFDK-DLATEYKRSCL----AALETRRFD  271 (595)
Q Consensus       233 W~~RkaAaEaLgsIA~avg-e~f~py~~~~I----~~Le~crfD  271 (595)
                      -..+..++|||+.|+.+.+ +.+.+|.+.++    .+|+++-.|
T Consensus       613 ~~~~~~~~e~l~~l~~~~~~~~~~~~~~~~~p~~~~iL~~~~~~  656 (960)
T 1wa5_C          613 PRFTHYTFESIGAILNYTQRQNLPLLVDSMMPTFLTVFSEDIQE  656 (960)
T ss_dssp             HHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHTTCTT
T ss_pred             cHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHhhhHh
Confidence            7788889999999999854 45555554444    456655433

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A

Probab=99.67  E-value=9.6e-16  Score=182.05  Aligned_cols=258  Identities=15%  Similarity=0.207  Sum_probs=212.6

Q ss_pred             cCCCC--hHHHHHHHHHHHHHhCCcC---------cHHHHHHhhhhcCC-CCChHHHHHHHHHHHHHHHHccccchhhHH
Q 046417           30 LADRD--TLPVATAELESIARTLTQD---------SFSSFLNCLQTTDS-SSKSPVRKQCVNLLTLLSRSHGDSLSPHLS   97 (595)
Q Consensus        30 L~DrD--T~r~A~~~LD~lA~~L~~~---------~lp~fL~~L~d~~s-s~kp~vRKaaI~lLG~lAEg~gd~I~PhLp   97 (595)
                      |.|.+  .+..|+..|..++..++++         ..+.+++.|.+... ++++.+|.+++.+|+.+++.+++.+.||++
T Consensus        95 l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~~l~~~~~  174 (1230)
T 1u6g_C           95 MLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHP  174 (1230)
T ss_dssp             TTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTTHH
T ss_pred             hcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhHhHHHHHHH
Confidence            44544  4677899999999999865         36666776666655 467999999999999999999999999999


Q ss_pred             HHHHHHHhhccCCChhHHHHHHHHHHHhhhhhcCCcchhccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCCCchHHHHH
Q 046417           98 KMISTVSCRLRDPDSSVRSACVAATTAMSLNITKPSFSVLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNPEVEQLR  177 (595)
Q Consensus        98 kIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~~~~~~~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d~~~~~L~  177 (595)
                      .+++.++..|.|+++.||.+++.+++.++..+.+.-+..++..|+..|..+.+..+...++.||..+.+..+....+|++
T Consensus       175 ~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~~~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~  254 (1230)
T 1u6g_C          175 SILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLE  254 (1230)
T ss_dssp             HHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC----CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGGGTTSCT
T ss_pred             HHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence            99999999999999999999999999999877532222367778888855544456677889999999887776678999


Q ss_pred             HHHHHHHHhhccCchhHHHHHHHHHHHHHHhhcccCcCcHHhHHHHHHHhccC---------------------------
Q 046417          178 KLLPRLGKAVRIEGFKAKAAVLGVIGSVVRVGGARSKGVLDWLVPCLVEFLCC---------------------------  230 (595)
Q Consensus       178 ~Ll~rL~klL~~~~~kaK~alLsAIgSlA~a~g~~~~~yl~~lmp~L~e~L~~---------------------------  230 (595)
                      .+++.+.+.+.++.-.+|..++.+++.++...+..+.+|++.++|.|..++..                           
T Consensus       255 ~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~l~~li~~ll~~l~~d~~~~~~~d~~~~~~~~~~~~~~~~~~  334 (1230)
T 1u6g_C          255 KIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQG  334 (1230)
T ss_dssp             THHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHTTCCCCC--------------------------
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHChHHHHHhHHHHHHHHHHHhCCCCCCCCcccccccccccccccccchhh
Confidence            99999999998888889999999999999987777889999999999877631                           


Q ss_pred             ----------CCHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHh
Q 046417          231 ----------DDWATRKAAAEVLGKVAVFDKDLATEYKRSCLAALETRRFDKVKIVRETMNRSLEMW  287 (595)
Q Consensus       231 ----------dDW~~RkaAaEaLgsIA~avge~f~py~~~~I~~Le~crfDKVK~VRda~~~aL~~~  287 (595)
                                ..|.+|.+|+++|+.++...++.|.+|.+.+++.|-.+-.|+-..||.++.++|..+
T Consensus       335 ~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l  401 (1230)
T 1u6g_C          335 SDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRFKEREENVKADVFHAYLSL  401 (1230)
T ss_dssp             ----------CTTHHHHHHHHHHHHHHTTCCTTHHHHHTTTHHHHHSTTSCSSSHHHHHHHHHHHHH
T ss_pred             cccccccccccCHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHH
Confidence                      138899999999999999777788999999899988777798999999888887644

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*

Probab=99.64  E-value=8.9e-15  Score=167.51  Aligned_cols=254  Identities=20%  Similarity=0.190  Sum_probs=197.8

Q ss_pred             hHHHHHHHHHHHHHhCCc---CcHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccchhhHHHHHHHHHhhccCCC
Q 046417           35 TLPVATAELESIARTLTQ---DSFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPHLSKMISTVSCRLRDPD  111 (595)
Q Consensus        35 T~r~A~~~LD~lA~~L~~---~~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~PhLpkIL~~IvrrLkD~d  111 (595)
                      .+..|+..|..++...+.   ..++.+++.|.....++++.+|+.++.+|+.+++.+++.+.||++.+++++++.++|++
T Consensus       190 vR~~A~~aL~~~~~~~~~~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l~~l~~~l~~~~~~~~  269 (852)
T 4fdd_A          190 IRSHAVACVNQFIISRTQALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQDQD  269 (852)
T ss_dssp             HHHHHHHHHHTTTTTTCHHHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHTCSS
T ss_pred             HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHccCCc
Confidence            344566666555543332   23567777777766777899999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHhhhhhc-C---Ccch-hccHHHHHHHh----------hc-----------CChhHHHHHHHHHHHHH
Q 046417          112 SSVRSACVAATTAMSLNIT-K---PSFS-VLSKPLIELIL----------VE-----------QDVNSQVGGAMCLAAAI  165 (595)
Q Consensus       112 s~VR~Ac~~aLg~LA~~l~-~---~~~~-~~l~PLi~aLl----------~d-----------~nk~VQ~~AA~cLaavi  165 (595)
                      ..||..|++.+..+++... .   .+.. .+++.|+..|.          ++           .+-.+..+|+.||..+.
T Consensus       270 ~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la  349 (852)
T 4fdd_A          270 ENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLA  349 (852)
T ss_dssp             HHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHH
Confidence            9999999999999886421 0   1111 13333333331          22           23457888999999998


Q ss_pred             hcCCCchHHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHhhcccCcCcHHhHHHHHHHhccCCCHHHHHHHHHHHHH
Q 046417          166 DAAPNPEVEQLRKLLPRLGKAVRIEGFKAKAAVLGVIGSVVRVGGARSKGVLDWLVPCLVEFLCCDDWATRKAAAEVLGK  245 (595)
Q Consensus       166 E~a~d~~~~~L~~Ll~rL~klL~~~~~kaK~alLsAIgSlA~a~g~~~~~yl~~lmp~L~e~L~~dDW~~RkaAaEaLgs  245 (595)
                      +..++   ..++.+++.+..++++++.++|.+++.++|+++...+..+.+|++.++|.|...+.|+++.+|.+|+.+|+.
T Consensus       350 ~~~~~---~~~~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~  426 (852)
T 4fdd_A          350 NVYRD---ELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSR  426 (852)
T ss_dssp             HHHGG---GGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHH
T ss_pred             HhccH---HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence            87543   467788999999999999999999999999999765555568999999999999999999999999999999


Q ss_pred             HHHHhHH-hHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHhHhcC
Q 046417          246 VAVFDKD-LATEYKRSCLAALETRRFDKVKIVRETMNRSLEMWKEVP  291 (595)
Q Consensus       246 IA~avge-~f~py~~~~I~~Le~crfDKVK~VRda~~~aL~~~K~i~  291 (595)
                      ++..++. ...+|...+++.|-.+--|.-+.||+.+..||..+-+..
T Consensus       427 l~~~~~~~~~~~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~  473 (852)
T 4fdd_A          427 YAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEA  473 (852)
T ss_dssp             THHHHHHSCTTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhccchHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHh
Confidence            9998763 455666677777666656888999999999998876544

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A

Probab=99.63  E-value=5.2e-14  Score=159.03  Aligned_cols=266  Identities=14%  Similarity=0.109  Sum_probs=204.0

Q ss_pred             HHHHh-hhcCCCC--hHHHHHHHHHHHHHhCCc-----CcHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHcc-----
Q 046417           23 VITCL-NKLADRD--TLPVATAELESIARTLTQ-----DSFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHG-----   89 (595)
Q Consensus        23 vl~~L-~KL~DrD--T~r~A~~~LD~lA~~L~~-----~~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~g-----   89 (595)
                      ++..| .-|.|.+  .+..|+..|..++..+++     ..++.+++.|.....+ ++.+|.+++.+|+.+++.++     
T Consensus       409 ~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~-~~~v~~~a~~al~~l~~~~~~~~~~  487 (876)
T 1qgr_A          409 AMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSA-EPRVASNVCWAFSSLAEAAYEAADV  487 (876)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTS-CHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHhhhcccc
Confidence            44433 3446766  467899999999998764     3477888888777655 48999999999999999986     


Q ss_pred             ---------ccchhhHHHHHHHHHhhccCCC---hhHHHHHHHHHHHhhhhhcCCcc--h-hccHHHHHHHhh-------
Q 046417           90 ---------DSLSPHLSKMISTVSCRLRDPD---SSVRSACVAATTAMSLNITKPSF--S-VLSKPLIELILV-------  147 (595)
Q Consensus        90 ---------d~I~PhLpkIL~~IvrrLkD~d---s~VR~Ac~~aLg~LA~~l~~~~~--~-~~l~PLi~aLl~-------  147 (595)
                               +.+.||++.|++.+++.+.+.+   ..||.++.++++.++..+.....  . .++.+++..+..       
T Consensus       488 ~~~~~~~~~~~l~~~~~~il~~L~~~l~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~  567 (876)
T 1qgr_A          488 ADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESH  567 (876)
T ss_dssp             TTSCCCCCCCSSTTTHHHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHHHHHTTTTS
T ss_pred             ccccccccchhhhHhHHHHHHHHHHHHhCcCcchhhHHHHHHHHHHHHHHHCchhhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence                     4589999999999999999874   57999999999999988753211  1 144444444421       


Q ss_pred             ---cCC----hhHHHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHHhhccCc--hhHHHHHHHHHHHHHHhhcccCcCcH
Q 046417          148 ---EQD----VNSQVGGAMCLAAAIDAAP-NPEVEQLRKLLPRLGKAVRIEG--FKAKAAVLGVIGSVVRVGGARSKGVL  217 (595)
Q Consensus       148 ---d~n----k~VQ~~AA~cLaaviE~a~-d~~~~~L~~Ll~rL~klL~~~~--~kaK~alLsAIgSlA~a~g~~~~~yl  217 (595)
                         +.+    +.++..++.||..++...+ ....+|++.+++.|..+|++..  ..++..++.+|+.++...+..|.+|+
T Consensus       568 ~~~~~d~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~  647 (876)
T 1qgr_A          568 IQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDALQISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYM  647 (876)
T ss_dssp             CCSTTHHHHHHHHHHHHHHHHHHHHTTSCHHHHHTTHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHGGGGGGGH
T ss_pred             cCChhhHHHHHHHHHHHHHHHHHHHHHhChhhhhHHHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHHhhHHHHH
Confidence               122    3457788999999999887 6677899999999999998774  35788899999999998888889999


Q ss_pred             HhHHHHHHHhccCC-CHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHhccCC--chHHHHHHHHHHHHHhHh
Q 046417          218 DWLVPCLVEFLCCD-DWATRKAAAEVLGKVAVFDKDLATEYKRSCLAALETRRFD--KVKIVRETMNRSLEMWKE  289 (595)
Q Consensus       218 ~~lmp~L~e~L~~d-DW~~RkaAaEaLgsIA~avge~f~py~~~~I~~Le~crfD--KVK~VRda~~~aL~~~K~  289 (595)
                      +.++|.|...+.+. ++.+|.+|+.+|+.|+.++|+.+.+|.+.++..|-..--+  --..||..+..++..+-.
T Consensus       648 ~~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~i~~  722 (876)
T 1qgr_A          648 EAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSNIIPFCDEVMQLLLENLGNENVHRSVKPQILSVFGDIAL  722 (876)
T ss_dssp             HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCTTSCGGGHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhCCccccHHhhHHHHHHHHHHHH
Confidence            99999999999886 8999999999999999999988888887777765433111  123577777777765543

>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}

Probab=99.63  E-value=3e-15  Score=173.81  Aligned_cols=249  Identities=10%  Similarity=0.051  Sum_probs=176.9

Q ss_pred             HHHHHHHHHHHHHhCCcCcHHHHHHhhhhcCCC-----CChHHHHHHHHHHHHHHHHccccchhhHHHHHHHHHhhcc--
Q 046417           36 LPVATAELESIARTLTQDSFSSFLNCLQTTDSS-----SKSPVRKQCVNLLTLLSRSHGDSLSPHLSKMISTVSCRLR--  108 (595)
Q Consensus        36 ~r~A~~~LD~lA~~L~~~~lp~fL~~L~d~~ss-----~kp~vRKaaI~lLG~lAEg~gd~I~PhLpkIL~~IvrrLk--  108 (595)
                      ++.+.+.|+.++..++.+.++.+++.|.+...+     .+|..|++++.+||.+++++.+...++|++|++ ++..|.  
T Consensus       438 R~~~~~~l~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~~~~~l~~l~~-~l~~l~~~  516 (971)
T 2x1g_F          438 RQDISDTFMYCYDVLNDYILEILAAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGEEKRQIPRLMR-VLAEIPYE  516 (971)
T ss_dssp             HHHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC------CHHHHHHH-HHHHSCTT
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcChhhhHHHHHHHH-HHHhcCcc
Confidence            456777889999988866688888888776543     689999999999999999999888899999999 555555  


Q ss_pred             CCChhHHHHHHHHHHHhhhhhcCCcchhccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhc
Q 046417          109 DPDSSVRSACVAATTAMSLNITKPSFSVLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNPEVEQLRKLLPRLGKAVR  188 (595)
Q Consensus       109 D~ds~VR~Ac~~aLg~LA~~l~~~~~~~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d~~~~~L~~Ll~rL~klL~  188 (595)
                      |+++.||.++||++|+|++|+.+.+  .++.+++..|+..-++.|+..||.||..+++.+...+.||++.|+..|..+++
T Consensus       517 d~~~~vr~~a~~~l~~~~~~l~~~~--~~l~~vl~~l~~~l~~~v~~~A~~al~~l~~~~~~~l~p~~~~ll~~l~~~l~  594 (971)
T 2x1g_F          517 KLNVKLLGTALETMGSYCNWLMENP--AYIPPAINLLVRGLNSSMSAQATLGLKELCRDCQLQLKPYADPLLNACHASLN  594 (971)
T ss_dssp             TSCHHHHHHHHHHHHHTHHHHC------CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHHHHHHhcCH--HHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHc
Confidence            7899999999999999999996433  35555555443211278999999999999999877788999999999999998


Q ss_pred             cC--chhHHHHHHHHHHHHHHhhc-ccCcCcHHhHHHHHHHhcc----CC--CHHHHHHHHHHHHHHHHH---hHH----
Q 046417          189 IE--GFKAKAAVLGVIGSVVRVGG-ARSKGVLDWLVPCLVEFLC----CD--DWATRKAAAEVLGKVAVF---DKD----  252 (595)
Q Consensus       189 ~~--~~kaK~alLsAIgSlA~a~g-~~~~~yl~~lmp~L~e~L~----~d--DW~~RkaAaEaLgsIA~a---vge----  252 (595)
                      .+  ..+.+..++++|+.++.+.+ ....+|+..+++.+.+.|.    ..  +-..+..++++|+.|+..   ++.    
T Consensus       595 ~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~  674 (971)
T 2x1g_F          595 TGRMKNSDSVRLMFSIGKLMSLLRPEEIPKYLDIIVSPCFEELQAICQADSKTPAARIRTIFRLNMISTLFSSLNTDVDE  674 (971)
T ss_dssp             STTSCHHHHHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHHHHHHHTC----
T ss_pred             CCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHhhcCCCcCc
Confidence            74  56789999999999998643 4457888888888887764    21  333556666666666554   332    


Q ss_pred             ---------hHHHHHHHHHHHHHhc--cCCchHHHHHHHHHHHHHh
Q 046417          253 ---------LATEYKRSCLAALETR--RFDKVKIVRETMNRSLEMW  287 (595)
Q Consensus       253 ---------~f~py~~~~I~~Le~c--rfDKVK~VRda~~~aL~~~  287 (595)
                               .+.+|...+++++...  .+.+-..|.+.+..++...
T Consensus       675 ~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~e~~~~~~~~~  720 (971)
T 2x1g_F          675 QATDQPIVQPVLLVMQRTMPIFKRIAEMWVEEIDVLEAACSAMKHA  720 (971)
T ss_dssp             ---------CCHHHHHTTHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred             ccccccCCCchHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence                     3455655555544332  1322335666666665553

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B

Probab=99.61  E-value=9.5e-15  Score=168.81  Aligned_cols=251  Identities=9%  Similarity=0.008  Sum_probs=190.9

Q ss_pred             HHHHHHHHHHHHHhCCcCcHHHHHHhhhhcC----CCCChHHHHHHHHHHHHHHHHccccchhhHHHHHHHHHhhccCCC
Q 046417           36 LPVATAELESIARTLTQDSFSSFLNCLQTTD----SSSKSPVRKQCVNLLTLLSRSHGDSLSPHLSKMISTVSCRLRDPD  111 (595)
Q Consensus        36 ~r~A~~~LD~lA~~L~~~~lp~fL~~L~d~~----ss~kp~vRKaaI~lLG~lAEg~gd~I~PhLpkIL~~IvrrLkD~d  111 (595)
                      ++.+.+.|+.++..++.+.++.+++.+.+..    .+.+|..|++++.+||.+++++.+...++|+.|++.+. .|.+++
T Consensus       424 r~~~~~~L~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~w~~~eaal~al~~i~~~~~~~~~~~l~~l~~~l~-~l~~~~  502 (963)
T 2x19_B          424 RVDISDTLMYVYEMLGAELLSNLYDKLGRLLTSSEEPYSWQHTEALLYGFQSIAETIDVNYSDVVPGLIGLIP-RISISN  502 (963)
T ss_dssp             HHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTCCCSCCHHHHHHHHHHHHHHTTSCCSSCCSHHHHHHHHGG-GSCCCS
T ss_pred             HHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHH-hCCCCc
Confidence            4667778899998888777888888887665    56789999999999999999999888899999999554 667678


Q ss_pred             hhHHHHHHHHHHHhhhhhcCCcchhccHHHHHHHhhc-CChhHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhccC
Q 046417          112 SSVRSACVAATTAMSLNITKPSFSVLSKPLIELILVE-QDVNSQVGGAMCLAAAIDAAPNPEVEQLRKLLPRLGKAVRIE  190 (595)
Q Consensus       112 s~VR~Ac~~aLg~LA~~l~~~~~~~~l~PLi~aLl~d-~nk~VQ~~AA~cLaaviE~a~d~~~~~L~~Ll~rL~klL~~~  190 (595)
                      +.||.+++|++|++++|+.+.+  .++++++..|+.. .++.|+..||.||..+++.+...+.||++.|+..|..++...
T Consensus       503 ~~vr~~~~~~l~~~~~~l~~~~--~~l~~vl~~l~~~l~~~~V~~~A~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~~  580 (963)
T 2x19_B          503 VQLADTVMFTIGALSEWLADHP--VMINSVLPLVLHALGNPELSVSSVSTLKKICRECKYDLPPYAANIVAVSQDVLMKQ  580 (963)
T ss_dssp             HHHHHHHHHHHHHTHHHHHHCH--HHHTTTHHHHHHHTTCGGGHHHHHHHHHHHHHHTGGGCTTTHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHhCH--HHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhccC
Confidence            8999999999999999985322  2444444444321 248899999999999999887777899999999999999863


Q ss_pred             --chhHHHHHHHHHHHHHHhhc-ccCcCcHHhHHHHHHHhccC-----CC---HHHHHHHHHHHHHHHHHhHH-------
Q 046417          191 --GFKAKAAVLGVIGSVVRVGG-ARSKGVLDWLVPCLVEFLCC-----DD---WATRKAAAEVLGKVAVFDKD-------  252 (595)
Q Consensus       191 --~~kaK~alLsAIgSlA~a~g-~~~~~yl~~lmp~L~e~L~~-----dD---W~~RkaAaEaLgsIA~avge-------  252 (595)
                        ....+..++++||.++.+.+ ..+.+|++.+|+.+.+.|..     .+   -..+..++++|+.|+.+++.       
T Consensus       581 ~~~~~~~~~~~eai~~i~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~  660 (963)
T 2x19_B          581 IHKTSQCMWLMQALGFLLSALQVEEILKNLHSLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDISHHEDDH  660 (963)
T ss_dssp             CSCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCCSSCCC---
T ss_pred             CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccccc
Confidence              56788999999999998664 56789999999999998841     12   33455788999999988752       


Q ss_pred             ---------------hHHHHHHHHHH----HHHhccCCchHHHHHHHHHHHHHhHhcC
Q 046417          253 ---------------LATEYKRSCLA----ALETRRFDKVKIVRETMNRSLEMWKEVP  291 (595)
Q Consensus       253 ---------------~f~py~~~~I~----~Le~crfDKVK~VRda~~~aL~~~K~i~  291 (595)
                                     .+.++...+++    +|+..- +. ..|++.+..++..+-...
T Consensus       661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~-~~v~e~~~~~l~~~~~~~  716 (963)
T 2x19_B          661 EGPELRKLPVPQGPNPVVVVLQQVFQLIQKVLSKWL-ND-AQVVEAVCAIFEKSVKTL  716 (963)
T ss_dssp             ------------CCCHHHHHHHHHHHHHHHHHHHHT-TC-HHHHHHHHHHHHHHHHHS
T ss_pred             cccccccCCCCCCCCchHHHHHHHHHHHHHHHHhcc-Cc-hHHHHHHHHHHHHHHHhh
Confidence                           13444444444    454432 11 367777777766654433

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A

Probab=99.60  E-value=3.3e-14  Score=148.27  Aligned_cols=269  Identities=14%  Similarity=0.114  Sum_probs=198.3

Q ss_pred             hhHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHhCCcC-cHHHHHHhhhhcCCCC--ChHHHHHHHHHHHHHHHHc-ccc
Q 046417           16 TNDLKQRVITCLNKLADRDTLPVATAELESIARTLTQD-SFSSFLNCLQTTDSSS--KSPVRKQCVNLLTLLSRSH-GDS   91 (595)
Q Consensus        16 ~~~lk~rvl~~L~KL~DrDT~r~A~~~LD~lA~~L~~~-~lp~fL~~L~d~~ss~--kp~vRKaaI~lLG~lAEg~-gd~   91 (595)
                      -+.+|+.++..|.. .+... +.++..|-.||....++ ..+-+++.|.+...++  ++.+|+.++.+|+.+++.+ ++.
T Consensus        88 ~~~ik~~ll~~l~~-~~~~v-~~~~~~i~~ia~~~~~~~~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~  165 (462)
T 1ibr_B           88 RREVKNYVLQTLGT-ETYRP-SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQ  165 (462)
T ss_dssp             HHHHHHHHHHHTTC-CCSSS-CSHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGG
T ss_pred             HHHHHHHHHHHhCC-CCchh-hHHHHHHHHHHHHhccccccHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchh
Confidence            35677777777654 23346 77888888888874332 3344444444433344  7899999999999999987 788


Q ss_pred             chhhHHHHHHHHHhhccCC--ChhHHHHHHHHHHHhhhhhcCC--c--chhccHHHHHHHhhcCChhHHHHHHHHHHHHH
Q 046417           92 LSPHLSKMISTVSCRLRDP--DSSVRSACVAATTAMSLNITKP--S--FSVLSKPLIELILVEQDVNSQVGGAMCLAAAI  165 (595)
Q Consensus        92 I~PhLpkIL~~IvrrLkD~--ds~VR~Ac~~aLg~LA~~l~~~--~--~~~~l~PLi~aLl~d~nk~VQ~~AA~cLaavi  165 (595)
                      +.+|++.+++.+++.|+|+  ++.||.+++++++.+..++.+.  .  +..++.+.+..++.+.+..+...++.||..++
T Consensus       166 ~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~  245 (462)
T 1ibr_B          166 LQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIM  245 (462)
T ss_dssp             TGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHH
T ss_pred             hHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence            8999999999999999999  6899999999999976554211  1  11233444444446778889999999999999


Q ss_pred             hcCCCchHHHHH-HHHHHHHHhhccCchhHHHHHHHHHHHHHHhh------------------ccc---CcCcHHhHHHH
Q 046417          166 DAAPNPEVEQLR-KLLPRLGKAVRIEGFKAKAAVLGVIGSVVRVG------------------GAR---SKGVLDWLVPC  223 (595)
Q Consensus       166 E~a~d~~~~~L~-~Ll~rL~klL~~~~~kaK~alLsAIgSlA~a~------------------g~~---~~~yl~~lmp~  223 (595)
                      +..++...+|++ .+++.+...+++..-.++..++..++.++...                  ...   +.+|++.++|.
T Consensus       246 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~  325 (462)
T 1ibr_B          246 SLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPI  325 (462)
T ss_dssp             HHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHH
Confidence            987665567888 89998888898888888888899888887642                  011   12356788898


Q ss_pred             HHHhcc-------CCCHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHhHh
Q 046417          224 LVEFLC-------CDDWATRKAAAEVLGKVAVFDKDLATEYKRSCLAALETRRFDKVKIVRETMNRSLEMWKE  289 (595)
Q Consensus       224 L~e~L~-------~dDW~~RkaAaEaLgsIA~avge~f~py~~~~I~~Le~crfDKVK~VRda~~~aL~~~K~  289 (595)
                      |.+.+.       +++|..|.+|+++|+.++..+|+.+.   +.+++.+..+-.|.-..||+++..+|..+-+
T Consensus       326 l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~~~~---~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~  395 (462)
T 1ibr_B          326 LTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIV---PHVLPFIKEHIKNPDWRYRDAAVMAFGCILE  395 (462)
T ss_dssp             HHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTTHH---HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSS
T ss_pred             HHHHHHhcccccccccchHHHHHHHHHHHHHHhccHHHH---HHHHHHHHHHhcCCChHHHHHHHHHHHHHhc
Confidence            888874       35799999999999999999985332   2344444444447778999999888877654

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A

Probab=99.54  E-value=1.7e-13  Score=142.97  Aligned_cols=230  Identities=13%  Similarity=0.148  Sum_probs=176.9

Q ss_pred             HHHHHHHHHHHHHhCC----cCc-HHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccchhhHH-HHHHHHHhhccC
Q 046417           36 LPVATAELESIARTLT----QDS-FSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPHLS-KMISTVSCRLRD  109 (595)
Q Consensus        36 ~r~A~~~LD~lA~~L~----~~~-lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~PhLp-kIL~~IvrrLkD  109 (595)
                      +..|+..|-.++..+.    ... ...+++.|.+...++++.+|+.++.+|+.+++.+++.+.+|++ .+++.++..++|
T Consensus       191 r~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~  270 (462)
T 1ibr_B          191 KLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKS  270 (462)
T ss_dssp             HHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            4556666655433222    111 2345777776667778999999999999999999999999999 999999999999


Q ss_pred             CChhHHHHHHHHHHHhhhhhc-----------------CC--cch-hccHHHHHHHh---hc-------CChhHHHHHHH
Q 046417          110 PDSSVRSACVAATTAMSLNIT-----------------KP--SFS-VLSKPLIELIL---VE-------QDVNSQVGGAM  159 (595)
Q Consensus       110 ~ds~VR~Ac~~aLg~LA~~l~-----------------~~--~~~-~~l~PLi~aLl---~d-------~nk~VQ~~AA~  159 (595)
                      .+..||..+++.++.+++...                 ..  ... .++..++..|+   .+       .+..+..+|+.
T Consensus       271 ~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~  350 (462)
T 1ibr_B          271 DIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGV  350 (462)
T ss_dssp             SSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHH
Confidence            999999999999999987631                 00  011 12233333332   22       23467889999


Q ss_pred             HHHHHHhcCCCchHHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHhhc-ccCcCcHHhHHHHHHHhccCCCHHHHHH
Q 046417          160 CLAAAIDAAPNPEVEQLRKLLPRLGKAVRIEGFKAKAAVLGVIGSVVRVGG-ARSKGVLDWLVPCLVEFLCCDDWATRKA  238 (595)
Q Consensus       160 cLaaviE~a~d~~~~~L~~Ll~rL~klL~~~~~kaK~alLsAIgSlA~a~g-~~~~~yl~~lmp~L~e~L~~dDW~~Rka  238 (595)
                      ||..+++..++   .+++.+++.+..+|++++.++|.+++-++|+++.... ..+.++++.++|.|...+.++++.+|.+
T Consensus       351 ~L~~l~~~~~~---~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~l~~~~~~l~~~l~d~~~~Vr~~  427 (462)
T 1ibr_B          351 CLMLLATCCED---DIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDT  427 (462)
T ss_dssp             HHHHHHHHTTT---THHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGCSCHHHHHH
T ss_pred             HHHHHHHhccH---HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCCCHHHHHH
Confidence            99999998764   4677899999999999999999999999999886333 3356788999999999999999999999


Q ss_pred             HHHHHHHHHHHhHHhH--HHHHHHHHHHHHhc
Q 046417          239 AAEVLGKVAVFDKDLA--TEYKRSCLAALETR  268 (595)
Q Consensus       239 AaEaLgsIA~avge~f--~py~~~~I~~Le~c  268 (595)
                      |+.+|+.++...++.+  .+|.+.+++.|-.+
T Consensus       428 a~~~l~~~~~~~~~~~~~~~~l~~ll~~Ll~~  459 (462)
T 1ibr_B          428 AAWTVGRICELLPEAAINDVYLAPLLQCLIEG  459 (462)
T ss_dssp             HHHHHHHHHHHGGGGCCSTTTHHHHHHHHHCC
T ss_pred             HHHHHHHHHHhcccccccHHHHHHHHHHHHHH
Confidence            9999999999988654  57888888876644

>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B

Probab=99.53  E-value=3.4e-14  Score=168.02  Aligned_cols=228  Identities=7%  Similarity=-0.093  Sum_probs=179.7

Q ss_pred             hHHHHHHHHHHHHHhCCcCcHHHHHHhhhhcCC--CCChHHHHHHHHHHHHHHHHccc-cchhhHHHHHHHHHhhcc---
Q 046417           35 TLPVATAELESIARTLTQDSFSSFLNCLQTTDS--SSKSPVRKQCVNLLTLLSRSHGD-SLSPHLSKMISTVSCRLR---  108 (595)
Q Consensus        35 T~r~A~~~LD~lA~~L~~~~lp~fL~~L~d~~s--s~kp~vRKaaI~lLG~lAEg~gd-~I~PhLpkIL~~IvrrLk---  108 (595)
                      .++..-+.|..++.-++++.++.+++.|.+...  +.+|..|++++.+||.+++++.+ ...++|+.+++.++..+.   
T Consensus       429 ~f~~~Rd~L~~l~~l~~~~~~~~~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~  508 (1023)
T 4hat_C          429 LYKSEREVLVYLTHLNVIDTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKR  508 (1023)
T ss_dssp             HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccc
Confidence            344555777777777777778899998876543  36799999999999999999874 478999999999999876   


Q ss_pred             --CCChhHHHHHHHHHHHhhhhhcCCcchhccHHHHHHHhh---cCChhHHHHHHHHHHHHHhcCCCch--------HHH
Q 046417          109 --DPDSSVRSACVAATTAMSLNITKPSFSVLSKPLIELILV---EQDVNSQVGGAMCLAAAIDAAPNPE--------VEQ  175 (595)
Q Consensus       109 --D~ds~VR~Ac~~aLg~LA~~l~~~~~~~~l~PLi~aLl~---d~nk~VQ~~AA~cLaaviE~a~d~~--------~~~  175 (595)
                        |+.+.||+.+||++|++++|+...+  .+|+|++..|+.   +.++.||..||.||..+++.+....        .||
T Consensus       509 ~~d~k~~v~~t~~~~lGry~~wl~~~~--~~L~~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c~~~l~~~~~~e~~p~  586 (1023)
T 4hat_C          509 GKDNKAVVASDIMYVVGQYPRFLKAHW--NFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPF  586 (1023)
T ss_dssp             SHHHHHHHHHHHHHHHHTCHHHHHHCH--HHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCH
T ss_pred             cCcchHHHHHHHHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchh
Confidence              5777899999999999999995322  478888888864   5678899999999999999864333        369


Q ss_pred             HHHHHHHHHHhhccCchhHHHHHHHHHHHHHHhhcc--cCcCcHHhHHHHHHHhccC---------CCH------HHHHH
Q 046417          176 LRKLLPRLGKAVRIEGFKAKAAVLGVIGSVVRVGGA--RSKGVLDWLVPCLVEFLCC---------DDW------ATRKA  238 (595)
Q Consensus       176 L~~Ll~rL~klL~~~~~kaK~alLsAIgSlA~a~g~--~~~~yl~~lmp~L~e~L~~---------dDW------~~Rka  238 (595)
                      ++.|+..+...+..-..+....++++||+++.+.+.  .-..|++.+|+.+.+.|..         +-|      ..-..
T Consensus       587 ~~~il~~l~~~~~~l~~~~~~~lyeai~~vi~~~~~~~~~~~~l~~L~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~l~~  666 (1023)
T 4hat_C          587 IQTIIRDIQKTTADLQPQQVHTFYKACGIIISEERSVAERNRLLSDLMQLPNMAWDTIVEQSTANPTLLLDSETVKIIAN  666 (1023)
T ss_dssp             HHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHTHHHHHHHHHHHHHHHHCTTGGGCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCHhhHHHHHHHHHHhHHHHHHHHHHHHhcCchhhcCHHHHHHHHH
Confidence            999999999988766666778889999999986542  2456888899998888742         112      23455


Q ss_pred             HHHHHHHHHHHhHHhHHHHHHHHHHH
Q 046417          239 AAEVLGKVAVFDKDLATEYKRSCLAA  264 (595)
Q Consensus       239 AaEaLgsIA~avge~f~py~~~~I~~  264 (595)
                      .++|++++|.++|..|.|++..+...
T Consensus       667 il~~~~~v~~~lg~~f~~~~~~i~~~  692 (1023)
T 4hat_C          667 IIKTNVAVCTSMGADFYPQLGHIYYN  692 (1023)
T ss_dssp             HHHHHHHHHHHHGGGGHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcHHHHHHHHHHHHH
Confidence            68999999999999888988654433

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}

Probab=99.50  E-value=1e-12  Score=128.77  Aligned_cols=190  Identities=14%  Similarity=0.214  Sum_probs=154.0

Q ss_pred             hhhcCCCC--hHHHHHHHHHHHHHhCC---cCcHHHHHHhhhhcCC-CCChHHHHHHHHHHHHHHHHccccchhhHHHHH
Q 046417           27 LNKLADRD--TLPVATAELESIARTLT---QDSFSSFLNCLQTTDS-SSKSPVRKQCVNLLTLLSRSHGDSLSPHLSKMI  100 (595)
Q Consensus        27 L~KL~DrD--T~r~A~~~LD~lA~~L~---~~~lp~fL~~L~d~~s-s~kp~vRKaaI~lLG~lAEg~gd~I~PhLpkIL  100 (595)
                      +..+.|.|  .++.|+..|..++..-+   ...+..+++.|..... +.++.+|.+++.+||.++.+.+..+.+|++.|+
T Consensus        21 ~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~~~il  100 (242)
T 2qk2_A           21 YDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYASACV  100 (242)
T ss_dssp             HHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHHHHHH
T ss_pred             HhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence            34555666  77889999999988632   2335566666666553 567899999999999999999999999999999


Q ss_pred             HHHHhhccCCChhHHHHHHHHHHHhhhhhcCCcchhccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCC-C-chHHHHHH
Q 046417          101 STVSCRLRDPDSSVRSACVAATTAMSLNITKPSFSVLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAP-N-PEVEQLRK  178 (595)
Q Consensus       101 ~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~~~~~~~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~-d-~~~~~L~~  178 (595)
                      |.|+.++.|+.+.||++++.+|..++..+   +...+++.|+.+| .+.++.++..++..|..+++... + ...+|++.
T Consensus       101 p~ll~~l~d~~~~vr~~a~~aL~~~~~~~---~~~~ll~~l~~~l-~~~~~~vr~~~l~~l~~~l~~~~~~~~~~~~l~~  176 (242)
T 2qk2_A          101 PSLLEKFKEKKPNVVTALREAIDAIYAST---SLEAQQESIVESL-SNKNPSVKSETALFIARALTRTQPTALNKKLLKL  176 (242)
T ss_dssp             HHHHHGGGCCCHHHHHHHHHHHHHHHTTS---CHHHHHHHHHHHT-TCSCHHHHHHHHHHHHHHHTTCCGGGCCHHHHHH
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHHHcC---CHHHHHHHHHHHH-cCCChHHHHHHHHHHHHHHHHcCCCCccHHHHHH
Confidence            99999999999999999999999998755   2223666666666 67789999999999999888753 3 24689999


Q ss_pred             HHHHHHHhhccCchhHHHHHHHHHHHHHHhhccc-CcCcHHhH
Q 046417          179 LLPRLGKAVRIEGFKAKAAVLGVIGSVVRVGGAR-SKGVLDWL  220 (595)
Q Consensus       179 Ll~rL~klL~~~~~kaK~alLsAIgSlA~a~g~~-~~~yl~~l  220 (595)
                      ++|.|.++|++....+|.+++.+++.++.+.|.. +.+|++.+
T Consensus       177 l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~vg~~~~~~~l~~L  219 (242)
T 2qk2_A          177 LTTSLVKTLNEPDPTVRDSSAEALGTLIKLMGDKAVTPLLADV  219 (242)
T ss_dssp             HHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHCHHHHGGGGTTS
T ss_pred             HHHHHHHHhcCCChHHHHHHHHHHHHHHHHcCHHHHHHHHHhc
Confidence            9999999999999999999999999999866543 56666543

>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B

Probab=99.44  E-value=4.5e-13  Score=157.78  Aligned_cols=223  Identities=9%  Similarity=-0.061  Sum_probs=173.6

Q ss_pred             HHHHHHHHHHHHHhCCcCcHHHHHHhhhhcCC--CCChHHHHHHHHHHHHHHHHccccc-hhhHHHHHHHHHhhc-----
Q 046417           36 LPVATAELESIARTLTQDSFSSFLNCLQTTDS--SSKSPVRKQCVNLLTLLSRSHGDSL-SPHLSKMISTVSCRL-----  107 (595)
Q Consensus        36 ~r~A~~~LD~lA~~L~~~~lp~fL~~L~d~~s--s~kp~vRKaaI~lLG~lAEg~gd~I-~PhLpkIL~~IvrrL-----  107 (595)
                      ++.+...|+.++...+.+.++.+++.|.....  ..+|..|++++.+||.+++++.+.. .++++.|+++++...     
T Consensus       430 ~~~~~~~L~~l~~~~~~~~l~~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~~~  509 (1049)
T 3m1i_C          430 YKSEREVLVYLTHLNVIDTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKRG  509 (1049)
T ss_dssp             HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSSCS
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhhcc
Confidence            56788899999977766668888888877653  4689999999999999999887654 467999999988743     


Q ss_pred             cCCChhHHHHHHHHHHHhhhhhcCCcchhccHHHHHHHh---hcCChhHHHHHHHHHHHHHhcCCCchH--------HHH
Q 046417          108 RDPDSSVRSACVAATTAMSLNITKPSFSVLSKPLIELIL---VEQDVNSQVGGAMCLAAAIDAAPNPEV--------EQL  176 (595)
Q Consensus       108 kD~ds~VR~Ac~~aLg~LA~~l~~~~~~~~l~PLi~aLl---~d~nk~VQ~~AA~cLaaviE~a~d~~~--------~~L  176 (595)
                      +|+.+.||..+||++|+|++|+...+  .++.+++..|+   .+.++.||..||.||..+++.+.....        ||+
T Consensus       510 ~~~~~~v~~~~~~~lgry~~~~~~~~--~~l~~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~~~l~~~~~~~~~p~~  587 (1049)
T 3m1i_C          510 KDNKAVVASDIMYVVGQYPRFLKAHW--NFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFI  587 (1049)
T ss_dssp             HHHHHHHHHHHHHHHHHCHHHHHHCH--HHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHH
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHhHH--HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcHH
Confidence            25778889889999999999985432  36666666654   467899999999999999998654444        899


Q ss_pred             HHHHHHHHHhhccCchhHHHHHHHHHHHHHHhhc--ccCcCcHHhHHHHHHHhccC------------CCHHHH---HHH
Q 046417          177 RKLLPRLGKAVRIEGFKAKAAVLGVIGSVVRVGG--ARSKGVLDWLVPCLVEFLCC------------DDWATR---KAA  239 (595)
Q Consensus       177 ~~Ll~rL~klL~~~~~kaK~alLsAIgSlA~a~g--~~~~~yl~~lmp~L~e~L~~------------dDW~~R---kaA  239 (595)
                      +.|+..+..++..-..+-...++++||.++.+.+  ....+|+..+|+.+.+.|..            .|-...   ...
T Consensus       588 ~~il~~l~~~~~~~~~~~~~~~~eai~~ii~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~  667 (1049)
T 3m1i_C          588 QTIIRDIQKTTADLQPQQVHTFYKACGIIISEERSVAERNRLLSDLMQLPNMAWDTIVEQSTANPTLLLDSETVKIIANI  667 (1049)
T ss_dssp             HHHHHTHHHHHTTSCHHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHTHHHHHHHHHHHHHHHHCGGGGGSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhcCHHHHHHHHHH
Confidence            9999999999977555566778899999998665  34678999999998877631            021111   345


Q ss_pred             HHHHHHHHHHhHHhHHHHHHH
Q 046417          240 AEVLGKVAVFDKDLATEYKRS  260 (595)
Q Consensus       240 aEaLgsIA~avge~f~py~~~  260 (595)
                      +.|++.++..+|..|.|+...
T Consensus       668 l~~~~~~~~~l~~~f~p~~~~  688 (1049)
T 3m1i_C          668 IKTNVAVCTSMGADFYPQLGH  688 (1049)
T ss_dssp             HHHHHHHHHHHGGGGHHHHHH
T ss_pred             HHHHHHHHHHhhHHHHHHHHH
Confidence            678888999999888887754

>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*

Probab=99.41  E-value=2.6e-12  Score=151.43  Aligned_cols=248  Identities=10%  Similarity=0.065  Sum_probs=181.1

Q ss_pred             HHHHHHHhCCcCc-HH----HHHHhhhhcC---CCCChHHHHHHHHHHHHHHHHcccc------chhhHHHHHHHHHhhc
Q 046417           42 ELESIARTLTQDS-FS----SFLNCLQTTD---SSSKSPVRKQCVNLLTLLSRSHGDS------LSPHLSKMISTVSCRL  107 (595)
Q Consensus        42 ~LD~lA~~L~~~~-lp----~fL~~L~d~~---ss~kp~vRKaaI~lLG~lAEg~gd~------I~PhLpkIL~~IvrrL  107 (595)
                      .|......+.++. +.    .+.+.|.+..   .+.+|..+++++.+|+.++|++.+.      ..+++|+|++++++.+
T Consensus       420 ~l~d~~~~l~~~~~l~~~~~~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll  499 (980)
T 3ibv_A          420 IFQDTINSIDSSLFSSYMYSAITSSLSTAATLSPENSWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVT  499 (980)
T ss_dssp             HHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHH
T ss_pred             HHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHH
Confidence            4444444444444 66    5666665554   2456999999999999999999752      2368888998888887


Q ss_pred             c-----CCChhHHHHHHHHHHHhhhhhcCCcchhccHHHHHHHhh-----cCChhHHHHHHHHHHHHHhcCCCchHHHHH
Q 046417          108 R-----DPDSSVRSACVAATTAMSLNITKPSFSVLSKPLIELILV-----EQDVNSQVGGAMCLAAAIDAAPNPEVEQLR  177 (595)
Q Consensus       108 k-----D~ds~VR~Ac~~aLg~LA~~l~~~~~~~~l~PLi~aLl~-----d~nk~VQ~~AA~cLaaviE~a~d~~~~~L~  177 (595)
                      +     ++.+.||.++|+++|++++|+...+  .++.|++.+++.     ++++.||.+||++|..+|+.+...+.+|++
T Consensus       500 ~s~i~~~~hp~V~~~~~~~l~rys~~~~~~~--~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~~L~~~~~  577 (980)
T 3ibv_A          500 TSQVCRHPHPLVQLLYMEILVRYASFFDYES--AAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKKQVVNYTE  577 (980)
T ss_dssp             HSSTTTCCCHHHHHHHHHHHHHTGGGGGTCC--TTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTTTCSSSHH
T ss_pred             hCCCCCCCCHHHHHHHHHHHHHHHHHHhcCc--hhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHhhHHhhhHHH
Confidence            6     8999999999999999999996533  488999999875     567889999999999999998877789999


Q ss_pred             HHHHHHHHhhccC---------------------chhHHHHHHHHHHHHHHhhcc---cCcCcHHhHHHHHHHhcc----
Q 046417          178 KLLPRLGKAVRIE---------------------GFKAKAAVLGVIGSVVRVGGA---RSKGVLDWLVPCLVEFLC----  229 (595)
Q Consensus       178 ~Ll~rL~klL~~~---------------------~~kaK~alLsAIgSlA~a~g~---~~~~yl~~lmp~L~e~L~----  229 (595)
                      .|+..+..+|.-.                     .|.-+..++++||.++.+.+.   .-..|+..++++|.+.|.    
T Consensus       578 ~il~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~ql~L~eaig~li~~~~~~~e~~~~~l~~ll~pl~~~l~~~l~  657 (980)
T 3ibv_A          578 SSLAMLGDLLNISVSPVTDMDAPVPTLNSSIRNSDFNSQLYLFETVGVLISSGNLTPEEQALYCDSLINALIGKANAALS  657 (980)
T ss_dssp             HHHHHTTGGGCCCCCCCCC--CSSCCHHHHHHTTTHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhhcCcCCCCCcccccccchhhhcccCCchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999998888621                     133456688999999987542   235788888888777653    


Q ss_pred             ---CC-CHHHHH-HHHHHHHHHHHHh----------HHhHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHhHhcCCC
Q 046417          230 ---CD-DWATRK-AAAEVLGKVAVFD----------KDLATEYKRSCLAALETRRFDKVKIVRETMNRSLEMWKEVPGV  293 (595)
Q Consensus       230 ---~d-DW~~Rk-aAaEaLgsIA~av----------ge~f~py~~~~I~~Le~crfDKVK~VRda~~~aL~~~K~i~~~  293 (595)
                         .. +-..+. -.+-+||.+|...          .+.|.+-.+.++.+|+..  -+...||+++..+++..-.+-|.
T Consensus       658 ~~~~~~~~~~~i~~~i~al~~lakgf~~~~~~~~p~~~~f~~~~~~il~~l~~~--~~~~~irea~~~~~~r~i~~lg~  734 (980)
T 3ibv_A          658 SDLSALENIISVYCSLMAIGNFAKGFPARGSEEVAWLASFNKASDEIFLILDRM--GFNEDIRGAVRFTSGRIINVVGP  734 (980)
T ss_dssp             TSCC--CHHHHHHHHHHHHHHHHHTSCSCC-CCCSHHHHHHHHHHHHHHHHHHS--CCSHHHHHHHHHHHHHHTTTTHH
T ss_pred             hcccCccHHHHHHHHHHHHHHHhccCCcccCCCCcHHHHHHHHHHHHHHHHHhc--CCcHHHHHHHHHHHHHHHHHccH
Confidence               11 212211 2344556666543          223444455666777754  56789999999999888776654

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}

Probab=99.38  E-value=6.9e-12  Score=119.28  Aligned_cols=190  Identities=21%  Similarity=0.230  Sum_probs=143.0

Q ss_pred             CcCcHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccchhhHHHHHHHHHhhccCCChhHHHHHHHHHHHhhhhhc
Q 046417           51 TQDSFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPHLSKMISTVSCRLRDPDSSVRSACVAATTAMSLNIT  130 (595)
Q Consensus        51 ~~~~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~PhLpkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~  130 (595)
                      +++.++.++..|.+    +++.+|..++.+|+.+..          +..++.+++.|+|+++.||.+++++||.+...  
T Consensus        17 ~~~~~~~L~~~L~~----~~~~vR~~A~~~L~~~~~----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~--   80 (211)
T 3ltm_A           17 DPEKVEMYIKNLQD----DSYYVRRAAAYALGKIGD----------ERAVEPLIKALKDEDAWVRRAAADALGQIGDE--   80 (211)
T ss_dssp             CGGGHHHHHHHTTC----SSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCCG--
T ss_pred             CHhHHHHHHHHHcC----CCHHHHHHHHHHHHHhCC----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCCH--
Confidence            46668888888763    579999999999987643          35677888999999999999999999998742  


Q ss_pred             CCcchhccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHhhc
Q 046417          131 KPSFSVLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNPEVEQLRKLLPRLGKAVRIEGFKAKAAVLGVIGSVVRVGG  210 (595)
Q Consensus       131 ~~~~~~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d~~~~~L~~Ll~rL~klL~~~~~kaK~alLsAIgSlA~a~g  210 (595)
                           ..+..|+..| .+.++.|+..|+.+|..+.+.          ..++.|.++|++++..+|..++.+++.+.   .
T Consensus        81 -----~~~~~L~~~l-~~~~~~vr~~a~~aL~~~~~~----------~~~~~L~~~l~d~~~~vr~~a~~aL~~~~---~  141 (211)
T 3ltm_A           81 -----RAVEPLIKAL-KDEDGWVRQSAAVALGQIGDE----------RAVEPLIKALKDEDWFVRIAAAFALGEIG---D  141 (211)
T ss_dssp             -----GGHHHHHHHT-TCSSHHHHHHHHHHHHHHCCG----------GGHHHHHHHTTCSSHHHHHHHHHHHHHHC---C
T ss_pred             -----HHHHHHHHHH-cCCCHHHHHHHHHHHHHhCcH----------HHHHHHHHHHhCCCHHHHHHHHHHHHHcC---C
Confidence                 2456677776 788999999999999877531          34566777889999999998888888652   1


Q ss_pred             ccCcCcHHhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHhHhc
Q 046417          211 ARSKGVLDWLVPCLVEFLCCDDWATRKAAAEVLGKVAVFDKDLATEYKRSCLAALETRRFDKVKIVRETMNRSLEMWKEV  290 (595)
Q Consensus       211 ~~~~~yl~~lmp~L~e~L~~dDW~~RkaAaEaLgsIA~avge~f~py~~~~I~~Le~crfDKVK~VRda~~~aL~~~K~i  290 (595)
                             +..++.|.+++.++++.+|..|+++|+.+..   +.   ..+.+...|+    |.-..||..+.++|..+..-
T Consensus       142 -------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~---~~---~~~~L~~~l~----d~~~~vr~~A~~aL~~~~~~  204 (211)
T 3ltm_A          142 -------ERAVEPLIKALKDEDGWVRQSAADALGEIGG---ER---VRAAMEKLAE----TGTGFARKVAVNYLETHKSF  204 (211)
T ss_dssp             -------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS---HH---HHHHHHHHHH----HCCHHHHHHHHHHHHC----
T ss_pred             -------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc---hh---HHHHHHHHHh----CCCHHHHHHHHHHHHhcCCC
Confidence                   3467889999999999999999999999843   11   2223334454    66788999999998877654


Q ss_pred             CC
Q 046417          291 PG  292 (595)
Q Consensus       291 ~~  292 (595)
                      ++
T Consensus       205 ~~  206 (211)
T 3ltm_A          205 NH  206 (211)
T ss_dssp             --
T ss_pred             CC
Confidence            43

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A

Probab=99.38  E-value=1.3e-11  Score=128.64  Aligned_cols=249  Identities=13%  Similarity=0.089  Sum_probs=178.0

Q ss_pred             hHHHHHHHHHHHHHhC-C-------cCcHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccchhhH-HHHHHHHHh
Q 046417           35 TLPVATAELESIARTL-T-------QDSFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPHL-SKMISTVSC  105 (595)
Q Consensus        35 T~r~A~~~LD~lA~~L-~-------~~~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~PhL-pkIL~~Ivr  105 (595)
                      .++.|+..|-.|+..- +       ...++.++..|.    +.++.+|..++.+|+.+++...+.....+ ..+++.+++
T Consensus       166 v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~----~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~  241 (450)
T 2jdq_A          166 MTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLF----VSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVE  241 (450)
T ss_dssp             HHHHHHHHHHHHHCCSSSCCCGGGTGGGHHHHHHHTT----CCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHc----cCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHH
Confidence            6777888888888654 2       123555555554    45789999999999999986544332211 357888999


Q ss_pred             hccCCChhHHHHHHHHHHHhhhhhcCC--cch--hccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCCCchHHHH-HHHH
Q 046417          106 RLRDPDSSVRSACVAATTAMSLNITKP--SFS--VLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNPEVEQL-RKLL  180 (595)
Q Consensus       106 rLkD~ds~VR~Ac~~aLg~LA~~l~~~--~~~--~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d~~~~~L-~~Ll  180 (595)
                      .|+++++.||.+++++|+.++......  ...  ..++.|+..| .+.++.++..|+.||..+..+..+....++ ..++
T Consensus       242 ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll-~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l  320 (450)
T 2jdq_A          242 LLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLL-SSPKESIKKEACWTISNITAGNRAQIQTVIDANIF  320 (450)
T ss_dssp             HTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHT-TCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHH
T ss_pred             HHCCCchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHH-cCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCH
Confidence            999999999999999999998643110  001  1566666666 677889999999999999875433222334 2588


Q ss_pred             HHHHHhhccCchhHHHHHHHHHHHHHHhhcccCcC-cH-HhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhHHh-----
Q 046417          181 PRLGKAVRIEGFKAKAAVLGVIGSVVRVGGARSKG-VL-DWLVPCLVEFLCCDDWATRKAAAEVLGKVAVFDKDL-----  253 (595)
Q Consensus       181 ~rL~klL~~~~~kaK~alLsAIgSlA~a~g~~~~~-yl-~~lmp~L~e~L~~dDW~~RkaAaEaLgsIA~avge~-----  253 (595)
                      +.|+.+|+++...+|..++.+|+.++..+...... ++ ..++|.|.+.+.+.+|.+|..|+++|+.++......     
T Consensus       321 ~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~  400 (450)
T 2jdq_A          321 PALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEAKRNG  400 (450)
T ss_dssp             HHHHHHHHHSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhccc
Confidence            99999999999999999999999988643211112 22 358999999999999999999999999998855321     


Q ss_pred             --HHHHHHHH-----HHHHHhccCCchHHHHHHHHHHHHHhH
Q 046417          254 --ATEYKRSC-----LAALETRRFDKVKIVRETMNRSLEMWK  288 (595)
Q Consensus       254 --f~py~~~~-----I~~Le~crfDKVK~VRda~~~aL~~~K  288 (595)
                        +.+|...+     ++.|+....+.-..||+.+..+|..+=
T Consensus       401 ~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~  442 (450)
T 2jdq_A          401 TGINPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHYF  442 (450)
T ss_dssp             SCCCHHHHHHHHHHCHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred             cchhHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHC
Confidence              23454433     556666666777788888877777554

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A

Probab=99.37  E-value=1.7e-11  Score=127.91  Aligned_cols=252  Identities=16%  Similarity=0.114  Sum_probs=179.1

Q ss_pred             hHHHHHHHHHHHHHhCC--------cCcHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHc-cccchhhHHHHHHHHHh
Q 046417           35 TLPVATAELESIARTLT--------QDSFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSH-GDSLSPHLSKMISTVSC  105 (595)
Q Consensus        35 T~r~A~~~LD~lA~~L~--------~~~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~-gd~I~PhLpkIL~~Ivr  105 (595)
                      .+..|+..|-.|+..-+        ...++.++..|.+   +.++.+|+.++.+|+.++.+. +..-...+..+++.+++
T Consensus       123 vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~---~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~  199 (450)
T 2jdq_A          123 VQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSK---QNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSW  199 (450)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTS---CCCHHHHHHHHHHHHHHHCCSSSCCCGGGTGGGHHHHHH
T ss_pred             HHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcC---CCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHH
Confidence            56778888888876432        3457888887763   356899999999999999876 43334455788999999


Q ss_pred             hccCCChhHHHHHHHHHHHhhhhhcCC--cch--hccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCCCchHHHHH-HHH
Q 046417          106 RLRDPDSSVRSACVAATTAMSLNITKP--SFS--VLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNPEVEQLR-KLL  180 (595)
Q Consensus       106 rLkD~ds~VR~Ac~~aLg~LA~~l~~~--~~~--~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d~~~~~L~-~Ll  180 (595)
                      .|++.++.||..++|+|+.++....+.  ...  ..+++|+..| .+.+..++..|+.+|..+....+.....++. .++
T Consensus       200 ~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l  278 (450)
T 2jdq_A          200 LLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELL-MHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSAL  278 (450)
T ss_dssp             HTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHT-TCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHH
T ss_pred             HHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHH-CCCchhHHHHHHHHHHHHhhCChHHHHHHHHCccH
Confidence            999999999999999999998643110  011  2677788777 6788899999999999998754322112222 488


Q ss_pred             HHHHHhhccCchhHHHHHHHHHHHHHHhhcccCcCcH-HhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHh-HHhHHHHH
Q 046417          181 PRLGKAVRIEGFKAKAAVLGVIGSVVRVGGARSKGVL-DWLVPCLVEFLCCDDWATRKAAAEVLGKVAVFD-KDLATEYK  258 (595)
Q Consensus       181 ~rL~klL~~~~~kaK~alLsAIgSlA~a~g~~~~~yl-~~lmp~L~e~L~~dDW~~RkaAaEaLgsIA~av-ge~f~py~  258 (595)
                      +.|..+|++++..++..++.+|+.++.........++ ..++|.|.+.|.+.+..+|+.|+-+|+.++... .+....+.
T Consensus       279 ~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~l~  358 (450)
T 2jdq_A          279 QSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLV  358 (450)
T ss_dssp             HHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHCCHHHHHHHH
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence            9999999999888999999999988742111111122 357889999999999999999999999998752 22222211


Q ss_pred             -HHHHHHHHhccCCchHHHHHHHHHHHHHhHhc
Q 046417          259 -RSCLAALETRRFDKVKIVRETMNRSLEMWKEV  290 (595)
Q Consensus       259 -~~~I~~Le~crfDKVK~VRda~~~aL~~~K~i  290 (595)
                       ..+++.|-..--|+-..||..+..+|..+-..
T Consensus       359 ~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~  391 (450)
T 2jdq_A          359 ELGCIKPLCDLLTVMDSKIVQVALNGLENILRL  391 (450)
T ss_dssp             HHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHH
T ss_pred             HCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence             12333433333355678899888888766543

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A

Probab=99.36  E-value=1.7e-11  Score=132.27  Aligned_cols=252  Identities=15%  Similarity=0.126  Sum_probs=181.6

Q ss_pred             hHHHHHHHHHHHHHhCCcCc---HHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccchhhH-HHHHHHHHhhccCC
Q 046417           35 TLPVATAELESIARTLTQDS---FSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPHL-SKMISTVSCRLRDP  110 (595)
Q Consensus        35 T~r~A~~~LD~lA~~L~~~~---lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~PhL-pkIL~~IvrrLkD~  110 (595)
                      ..+.|+..|-.|+..-+...   +..+++.|.....+.++.+|..++.+|+.++.+..+.+...+ ..+++.++..|+++
T Consensus       219 v~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~  298 (528)
T 4b8j_A          219 MLRNATWTLSNFCRGKPQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHP  298 (528)
T ss_dssp             HHHHHHHHHHHHHCSSSCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCS
T ss_pred             HHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCC
Confidence            56677788888877643211   223344444444556799999999999999977655433222 25788999999999


Q ss_pred             ChhHHHHHHHHHHHhhhhhcCC--cch--hccHHHHHHHhhcC-ChhHHHHHHHHHHHHHhcCCCchHHHH-HHHHHHHH
Q 046417          111 DSSVRSACVAATTAMSLNITKP--SFS--VLSKPLIELILVEQ-DVNSQVGGAMCLAAAIDAAPNPEVEQL-RKLLPRLG  184 (595)
Q Consensus       111 ds~VR~Ac~~aLg~LA~~l~~~--~~~--~~l~PLi~aLl~d~-nk~VQ~~AA~cLaaviE~a~d~~~~~L-~~Ll~rL~  184 (595)
                      ++.||..|+++|+.|+......  ...  ..+++|+..| .+. +..++..||.+|..+.....+.....+ ..++|.|+
T Consensus       299 ~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL-~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~  377 (528)
T 4b8j_A          299 SPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLL-TQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLV  377 (528)
T ss_dssp             CHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHH-HSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHH
T ss_pred             ChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHH-cCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHH
Confidence            9999999999999999632110  011  1567777777 566 889999999999999875322222222 25789999


Q ss_pred             HhhccCchhHHHHHHHHHHHHHHhhcccCcCcH--HhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhHH-------h--
Q 046417          185 KAVRIEGFKAKAAVLGVIGSVVRVGGARSKGVL--DWLVPCLVEFLCCDDWATRKAAAEVLGKVAVFDKD-------L--  253 (595)
Q Consensus       185 klL~~~~~kaK~alLsAIgSlA~a~g~~~~~yl--~~lmp~L~e~L~~dDW~~RkaAaEaLgsIA~avge-------~--  253 (595)
                      .+|.+....++..++.+|+.++..+......|+  ..+++.|.++|.+.++.++..|+++|+.|......       .  
T Consensus       378 ~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~  457 (528)
T 4b8j_A          378 NLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENILKVGETDKTLAAGDVN  457 (528)
T ss_dssp             HHHHHSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHHTCSCC
T ss_pred             HHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhhccccccc
Confidence            999999999999999999999876533333444  45799999999999999999999999999876543       1  


Q ss_pred             -HHHHHH--HHHHHHHhccCCchHHHHHHHHHHHHHh
Q 046417          254 -ATEYKR--SCLAALETRRFDKVKIVRETMNRSLEMW  287 (595)
Q Consensus       254 -f~py~~--~~I~~Le~crfDKVK~VRda~~~aL~~~  287 (595)
                       +..+..  .++..|+.+..+.-..|++.+...|+.+
T Consensus       458 ~~~~~i~~~~~~~~l~~L~~~~~~~v~~~a~~il~~~  494 (528)
T 4b8j_A          458 VFSQMIDEAEGLEKIENLQSHDNNEIYEKAVKILEAY  494 (528)
T ss_dssp             HHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence             222222  2366777787777788898888877754

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}

Probab=99.35  E-value=2.6e-11  Score=114.47  Aligned_cols=183  Identities=21%  Similarity=0.239  Sum_probs=138.9

Q ss_pred             HHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccchhhHHHHHHHHHhhccCCChhHHHHHHHHHHHhhhhhcCCcc
Q 046417           55 FSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPHLSKMISTVSCRLRDPDSSVRSACVAATTAMSLNITKPSF  134 (595)
Q Consensus        55 lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~PhLpkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~~~~~  134 (595)
                      .+.++..|.    ++++.+|..++.+|+.+..          +..++.+++.|+|+++.||..++++|+.+...      
T Consensus        16 ~~~~i~~L~----~~~~~vr~~A~~~L~~~~~----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~------   75 (201)
T 3ltj_A           16 VEMYIKNLQ----DDSYYVRRAAAYALGKIGD----------ERAVEPLIKALKDEDAWVRRAAADALGQIGDE------   75 (201)
T ss_dssp             HHHHHHHTT----CSCHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG------
T ss_pred             hHHHHHHhc----CCCHHHHHHHHHHHHhcCC----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCCH------
Confidence            555555554    4679999999999987653          24567888899999999999999999988642      


Q ss_pred             hhccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHhhcccCc
Q 046417          135 SVLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNPEVEQLRKLLPRLGKAVRIEGFKAKAAVLGVIGSVVRVGGARSK  214 (595)
Q Consensus       135 ~~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d~~~~~L~~Ll~rL~klL~~~~~kaK~alLsAIgSlA~a~g~~~~  214 (595)
                       ..+..|+..| .+.++.|+..|+.+|..+...          ..++.|.++|++++..+|.+++.++|.+.   .    
T Consensus        76 -~~~~~L~~~l-~d~~~~vr~~a~~aL~~~~~~----------~~~~~L~~~l~d~~~~vr~~a~~aL~~~~---~----  136 (201)
T 3ltj_A           76 -RAVEPLIKAL-KDEDGWVRQSAAVALGQIGDE----------RAVEPLIKALKDEDWFVRIAAAFALGEIG---D----  136 (201)
T ss_dssp             -GGHHHHHHHT-TCSSHHHHHHHHHHHHHHCCG----------GGHHHHHHHTTCSSHHHHHHHHHHHHHHT---C----
T ss_pred             -HHHHHHHHHH-cCCCHHHHHHHHHHHHHhCcH----------HHHHHHHHHHcCCCHHHHHHHHHHHHHhC---C----
Confidence             2456677766 788999999999999886431          24566777888999999998888888653   1    


Q ss_pred             CcHHhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHhHh
Q 046417          215 GVLDWLVPCLVEFLCCDDWATRKAAAEVLGKVAVFDKDLATEYKRSCLAALETRRFDKVKIVRETMNRSLEMWKE  289 (595)
Q Consensus       215 ~yl~~lmp~L~e~L~~dDW~~RkaAaEaLgsIA~avge~f~py~~~~I~~Le~crfDKVK~VRda~~~aL~~~K~  289 (595)
                         +..++.|.+++.+++|.+|..|+++|+.+..   +.   ..+.+...++    |.-..||.++.++|..+++
T Consensus       137 ---~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~---~~---~~~~L~~~l~----d~~~~vr~~A~~aL~~l~~  198 (201)
T 3ltj_A          137 ---ERAVEPLIKALKDEDGWVRQSAADALGEIGG---ER---VRAAMEKLAE----TGTGFARKVAVNYLETHKS  198 (201)
T ss_dssp             ---GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS---HH---HHHHHHHHHH----HCCHHHHHHHHHHHHHCC-
T ss_pred             ---HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc---hh---HHHHHHHHHh----CCCHHHHHHHHHHHHHHHh
Confidence               3567889999999999999999999999832   11   2223334454    5678999999999987664

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A

Probab=99.35  E-value=1.6e-11  Score=133.03  Aligned_cols=250  Identities=12%  Similarity=0.106  Sum_probs=182.6

Q ss_pred             ChHHHHHHHHHHHHHhC-C-------cCcHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccchhhHH-HHHHHHH
Q 046417           34 DTLPVATAELESIARTL-T-------QDSFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPHLS-KMISTVS  104 (595)
Q Consensus        34 DT~r~A~~~LD~lA~~L-~-------~~~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~PhLp-kIL~~Iv  104 (595)
                      +..+.|+..|-.|+..- +       ...++.++..|    .+.++.+|..++.+|+.++.+..+.+...+. .+++.++
T Consensus       230 ~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL----~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv  305 (530)
T 1wa5_B          230 SLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLI----YSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLV  305 (530)
T ss_dssp             HHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHT----TCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHH----cCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHH
Confidence            35677888888888654 2       12355555555    3457899999999999999877655444443 6788999


Q ss_pred             hhccCCChhHHHHHHHHHHHhhhhhcCC--cch--hccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCCCchHHHH-HHH
Q 046417          105 CRLRDPDSSVRSACVAATTAMSLNITKP--SFS--VLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNPEVEQL-RKL  179 (595)
Q Consensus       105 rrLkD~ds~VR~Ac~~aLg~LA~~l~~~--~~~--~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d~~~~~L-~~L  179 (595)
                      ..|+++++.||..|+++|+.|+......  ...  .++++|+..| .+.+..++..|+.||..+.....+....++ ..+
T Consensus       306 ~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL-~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~  384 (530)
T 1wa5_B          306 ELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLL-SSPKENIKKEACWTISNITAGNTEQIQAVIDANL  384 (530)
T ss_dssp             HGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHT-TCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTC
T ss_pred             HHHCCCChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHH-cCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCC
Confidence            9999999999999999999998532110  011  2566666666 677889999999999999875433222333 247


Q ss_pred             HHHHHHhhccCchhHHHHHHHHHHHHHHhhcc--cCcCcH--HhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhHHh--
Q 046417          180 LPRLGKAVRIEGFKAKAAVLGVIGSVVRVGGA--RSKGVL--DWLVPCLVEFLCCDDWATRKAAAEVLGKVAVFDKDL--  253 (595)
Q Consensus       180 l~rL~klL~~~~~kaK~alLsAIgSlA~a~g~--~~~~yl--~~lmp~L~e~L~~dDW~~RkaAaEaLgsIA~avge~--  253 (595)
                      ++.|+.+|.++...++..++.+|+.++..+..  ....++  ..++|.|..++.+.+..+|..|+.+|..|+......  
T Consensus       385 l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~~  464 (530)
T 1wa5_B          385 IPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKE  464 (530)
T ss_dssp             HHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhh
Confidence            89999999999999999999999999876432  212222  238999999999999999999999999998765321  


Q ss_pred             -----HHHHHH-----HHHHHHHhccCCchHHHHHHHHHHHHHhH
Q 046417          254 -----ATEYKR-----SCLAALETRRFDKVKIVRETMNRSLEMWK  288 (595)
Q Consensus       254 -----f~py~~-----~~I~~Le~crfDKVK~VRda~~~aL~~~K  288 (595)
                           ..+|..     .++..|+....|.-.-||+.+..+|..+=
T Consensus       465 ~~~~~~~~~~~~l~~~g~~~~L~~L~~~~~~~v~~~a~~il~~~~  509 (530)
T 1wa5_B          465 ARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIETYF  509 (530)
T ss_dssp             HHTCSSCHHHHHHHHTTHHHHHHGGGGCSCHHHHHHHHHHHHHHS
T ss_pred             cccccccHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHC
Confidence                 123332     24778888888888889998777776443

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A

Probab=99.34  E-value=2.3e-11  Score=131.84  Aligned_cols=253  Identities=15%  Similarity=0.127  Sum_probs=180.7

Q ss_pred             ChHHHHHHHHHHHHHhC--------CcCcHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHc-cccchhhHHHHHHHHH
Q 046417           34 DTLPVATAELESIARTL--------TQDSFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSH-GDSLSPHLSKMISTVS  104 (595)
Q Consensus        34 DT~r~A~~~LD~lA~~L--------~~~~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~-gd~I~PhLpkIL~~Iv  104 (595)
                      +.+..|+..|-.|+..-        ....++.++..|.+    .++.+|+.++.+|+.++.+. +..-......+++.++
T Consensus       188 ~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~----~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~  263 (530)
T 1wa5_B          188 EVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNS----NKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLA  263 (530)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGS----CCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhcc----CCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHH
Confidence            35566777777777542        13457888887765    56899999999999999877 4444566778999999


Q ss_pred             hhccCCChhHHHHHHHHHHHhhhhhcC--Ccch--hccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCCCchHHHHH-HH
Q 046417          105 CRLRDPDSSVRSACVAATTAMSLNITK--PSFS--VLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNPEVEQLR-KL  179 (595)
Q Consensus       105 rrLkD~ds~VR~Ac~~aLg~LA~~l~~--~~~~--~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d~~~~~L~-~L  179 (595)
                      +.|.++++.||..++++|+.|+.....  ....  ..++.|+..| .+.+..++..|+.+|..++...+.....++. .+
T Consensus       264 ~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~  342 (530)
T 1wa5_B          264 KLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELL-SHESTLVQTPALRAVGNIVTGNDLQTQVVINAGV  342 (530)
T ss_dssp             HHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGG-GCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTH
T ss_pred             HHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHH-CCCChhhHHHHHHHHHHHHcCCHHHHHHHHHcch
Confidence            999999999999999999999964211  0111  2566677766 6788899999999999988654322222332 58


Q ss_pred             HHHHHHhhccCchhHHHHHHHHHHHHHHhhcccCcCcH-HhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhHH--hHHH
Q 046417          180 LPRLGKAVRIEGFKAKAAVLGVIGSVVRVGGARSKGVL-DWLVPCLVEFLCCDDWATRKAAAEVLGKVAVFDKD--LATE  256 (595)
Q Consensus       180 l~rL~klL~~~~~kaK~alLsAIgSlA~a~g~~~~~yl-~~lmp~L~e~L~~dDW~~RkaAaEaLgsIA~avge--~f~p  256 (595)
                      ++.|..+|.++...++..++.+|+.++.........++ ..++|.|.+.|.+.++.+|..|+.+|+.++.....  ....
T Consensus       343 l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~  422 (530)
T 1wa5_B          343 LPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIR  422 (530)
T ss_dssp             HHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTCTHHHH
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCcHHHHH
Confidence            89999999999888998888899887742211111222 35788999999889999999999999999886432  1112


Q ss_pred             HH--HHHHHHHHhccCCchHHHHHHHHHHHHHhHhcC
Q 046417          257 YK--RSCLAALETRRFDKVKIVRETMNRSLEMWKEVP  291 (595)
Q Consensus       257 y~--~~~I~~Le~crfDKVK~VRda~~~aL~~~K~i~  291 (595)
                      +.  ..+++.|...-.++-..||..+..+|..+-...
T Consensus       423 ~l~~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~~~  459 (530)
T 1wa5_B          423 YLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMG  459 (530)
T ss_dssp             HHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHhh
Confidence            21  124455544444667889999888887765543

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}

Probab=99.28  E-value=1.1e-10  Score=116.69  Aligned_cols=199  Identities=11%  Similarity=0.061  Sum_probs=164.5

Q ss_pred             chhhHHHHHHHHHhhccCCChhHHHHHHHHHHH-hhhhhcC-----CcchhccHHHHHHHhhcCChhHHHHHHHHHHHHH
Q 046417           92 LSPHLSKMISTVSCRLRDPDSSVRSACVAATTA-MSLNITK-----PSFSVLSKPLIELILVEQDVNSQVGGAMCLAAAI  165 (595)
Q Consensus        92 I~PhLpkIL~~IvrrLkD~ds~VR~Ac~~aLg~-LA~~l~~-----~~~~~~l~PLi~aLl~d~nk~VQ~~AA~cLaavi  165 (595)
                      |.+.||+   -+...+++++..-|.++..+|+. +.+.+.+     ..+..++.-|...|-.|.|..|...|+.||..+.
T Consensus        13 i~~kl~~---~f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la   89 (249)
T 2qk1_A           13 ILDKLPK---DFQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELIC   89 (249)
T ss_dssp             CGGGSCT---THHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHH
T ss_pred             hhhhCCh---hHHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Confidence            4555555   56677899999999999999999 8754322     1112245555555535889999999999999999


Q ss_pred             hcCC-CchH-HHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHhhc-ccCcCcHHhHHHHHHHhccCCCHHHHHHHHHH
Q 046417          166 DAAP-NPEV-EQLRKLLPRLGKAVRIEGFKAKAAVLGVIGSVVRVGG-ARSKGVLDWLVPCLVEFLCCDDWATRKAAAEV  242 (595)
Q Consensus       166 E~a~-d~~~-~~L~~Ll~rL~klL~~~~~kaK~alLsAIgSlA~a~g-~~~~~yl~~lmp~L~e~L~~dDW~~RkaAaEa  242 (595)
                      ++.. .... +|...++|.++..+++....++.++..|+-+++.... ....+|++.+|+.|.+.|.+..|++|..++.+
T Consensus        90 ~~l~~~~f~~~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~  169 (249)
T 2qk1_A           90 DKLKTPGFSKDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQL  169 (249)
T ss_dssp             HHHCTTTSCHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHH
T ss_pred             HhcccccccHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHH
Confidence            9877 6676 8999999999999999888899888889998887543 22235699999999999999999999999999


Q ss_pred             HHHHHHHhH---HhHHHHH-HHHHHHHHhccCCchHHHHHHHHHHHHHhHhcCCC
Q 046417          243 LGKVAVFDK---DLATEYK-RSCLAALETRRFDKVKIVRETMNRSLEMWKEVPGV  293 (595)
Q Consensus       243 LgsIA~avg---e~f~py~-~~~I~~Le~crfDKVK~VRda~~~aL~~~K~i~~~  293 (595)
                      |+.++...+   ..|.+|. +.+++.|..|-.|.-+.||+++.++|..+-.+-|.
T Consensus       170 l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~vG~  224 (249)
T 2qk1_A          170 FNASMKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGM  224 (249)
T ss_dssp             HHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCS
T ss_pred             HHHHHHHcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCH
Confidence            999999887   5688898 89999999999999999999999999998887775

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A

Probab=99.27  E-value=6.4e-11  Score=127.84  Aligned_cols=253  Identities=13%  Similarity=0.102  Sum_probs=180.0

Q ss_pred             hHHHHHHHHHHHHHhCC--------cCcHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccchhhHHHHHHHHHhh
Q 046417           35 TLPVATAELESIARTLT--------QDSFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPHLSKMISTVSCR  106 (595)
Q Consensus        35 T~r~A~~~LD~lA~~L~--------~~~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~PhLpkIL~~Ivrr  106 (595)
                      .+..|+..|-.|+..-+        ...+++++.+|..   +.++.+|+.++.+|+.++...+.........+++.+++.
T Consensus       176 v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~---~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~l  252 (528)
T 4b8j_A          176 VREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNE---HTKLSMLRNATWTLSNFCRGKPQPSFEQTRPALPALARL  252 (528)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCT---TCCHHHHHHHHHHHHHHHCSSSCCCHHHHTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhc---CCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHH
Confidence            56677888888775422        2347777777743   357899999999999999987666666778899999999


Q ss_pred             ccCCChhHHHHHHHHHHHhhhhhcCC--cch--hccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCCCchHHHH-HHHHH
Q 046417          107 LRDPDSSVRSACVAATTAMSLNITKP--SFS--VLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNPEVEQL-RKLLP  181 (595)
Q Consensus       107 LkD~ds~VR~Ac~~aLg~LA~~l~~~--~~~--~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d~~~~~L-~~Ll~  181 (595)
                      |+++++.|+..++++|+.|+......  ...  ..+++|+..| .+.+..++..|+.+|..++...+.....++ ..+++
T Consensus       253 L~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL-~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~  331 (528)
T 4b8j_A          253 IHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL-LHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALP  331 (528)
T ss_dssp             TTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHT-TCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHH
T ss_pred             HCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHH-cCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHH
Confidence            99999999999999999999543110  011  2667777777 677888999999999999875432222233 34789


Q ss_pred             HHHHhhccC-chhHHHHHHHHHHHHHHhhcccCcCcH-HhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhHHhHHHHH-
Q 046417          182 RLGKAVRIE-GFKAKAAVLGVIGSVVRVGGARSKGVL-DWLVPCLVEFLCCDDWATRKAAAEVLGKVAVFDKDLATEYK-  258 (595)
Q Consensus       182 rL~klL~~~-~~kaK~alLsAIgSlA~a~g~~~~~yl-~~lmp~L~e~L~~dDW~~RkaAaEaLgsIA~avge~f~py~-  258 (595)
                      .|..+|.++ ...++..++.+|+.++.........++ ..++|.|.+.|.+.++.+|..|+.+|+.++.........|. 
T Consensus       332 ~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~  411 (528)
T 4b8j_A          332 CLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLV  411 (528)
T ss_dssp             HHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred             HHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence            999999988 888888888889888742111111111 35789999999988999999999999999887322222222 


Q ss_pred             -HHHHHHHHhccCCchHHHHHHHHHHHHHhHhcC
Q 046417          259 -RSCLAALETRRFDKVKIVRETMNRSLEMWKEVP  291 (595)
Q Consensus       259 -~~~I~~Le~crfDKVK~VRda~~~aL~~~K~i~  291 (595)
                       ..+++.|-.+-.++-..|+..+..+|..+-...
T Consensus       412 ~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~  445 (528)
T 4b8j_A          412 SEGCIKPLCDLLICPDIRIVTVCLEGLENILKVG  445 (528)
T ss_dssp             HTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence             234444444444556677888788877665433

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}

Probab=99.24  E-value=1.6e-10  Score=110.82  Aligned_cols=235  Identities=15%  Similarity=0.111  Sum_probs=165.4

Q ss_pred             cHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccchhhH-HHHHHHHHhhccCCChhHHHHHHHHHHHhhhhhcC-
Q 046417           54 SFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPHL-SKMISTVSCRLRDPDSSVRSACVAATTAMSLNITK-  131 (595)
Q Consensus        54 ~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~PhL-pkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~~-  131 (595)
                      .++.++..|.+    +++.+|..++.+|+.++....+.....+ ..+++.+++.|+++++.||..++++|+.++..-.+ 
T Consensus         3 ~i~~L~~~L~~----~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~   78 (252)
T 4hxt_A            3 DVEKLVKLLTS----TDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEA   78 (252)
T ss_dssp             HHHHHHHHTTC----SCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred             cHHHHHHHHcC----CCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHH
Confidence            36677777764    4589999999999999988764433332 25789999999999999999999999999964211 


Q ss_pred             -Ccch--hccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCCCchHHHHH-HHHHHHHHhhccCchhHHHHHHHHHHHHHH
Q 046417          132 -PSFS--VLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNPEVEQLR-KLLPRLGKAVRIEGFKAKAAVLGVIGSVVR  207 (595)
Q Consensus       132 -~~~~--~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d~~~~~L~-~Ll~rL~klL~~~~~kaK~alLsAIgSlA~  207 (595)
                       ....  ..+++|+..| .+.+..++..|+.+|..+....++.....+. ..++.|.++|+++...++..++.+++.++.
T Consensus        79 ~~~~~~~~~i~~l~~ll-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~  157 (252)
T 4hxt_A           79 IKAIVDAGGVEVLVKLL-TSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIAS  157 (252)
T ss_dssp             HHHHHHTTHHHHHHHHT-TCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHCCCHHHHHHHH-cCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence             0011  1567777776 6788999999999999998643222222222 478999999999998899998899998874


Q ss_pred             hhcccCcC-cHHhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhHHhHHHHH-HHHHHHHHhccCCchHHHHHHHHHHHH
Q 046417          208 VGGARSKG-VLDWLVPCLVEFLCCDDWATRKAAAEVLGKVAVFDKDLATEYK-RSCLAALETRRFDKVKIVRETMNRSLE  285 (595)
Q Consensus       208 a~g~~~~~-yl~~lmp~L~e~L~~dDW~~RkaAaEaLgsIA~avge~f~py~-~~~I~~Le~crfDKVK~VRda~~~aL~  285 (595)
                      ........ .-..++|.|.+++.++++.+|..|+.+|+.++....+....+. ..+++.|-..--+.-..||..+..+|.
T Consensus       158 ~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~  237 (252)
T 4hxt_A          158 GPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALE  237 (252)
T ss_dssp             SCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHH
Confidence            32111001 1134789999999999999999999999999863322222111 223333333333555689999888888


Q ss_pred             HhHhcCCC
Q 046417          286 MWKEVPGV  293 (595)
Q Consensus       286 ~~K~i~~~  293 (595)
                      -+..-...
T Consensus       238 ~l~~~~~~  245 (252)
T 4hxt_A          238 NIKSGGWL  245 (252)
T ss_dssp             HHHHTCBC
T ss_pred             HHHcCCCc
Confidence            87765543

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}

Probab=99.24  E-value=4.6e-10  Score=105.81  Aligned_cols=183  Identities=17%  Similarity=0.209  Sum_probs=139.5

Q ss_pred             hHHHHHHHHHhhhcCCCC--hHHHHHHHHHHHHHhCCcCcHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccchh
Q 046417           17 NDLKQRVITCLNKLADRD--TLPVATAELESIARTLTQDSFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSP   94 (595)
Q Consensus        17 ~~lk~rvl~~L~KL~DrD--T~r~A~~~LD~lA~~L~~~~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~P   94 (595)
                      ......+++.|   .|.|  .+..|+..|-.+.   +++.++.++..|.+    +++.+|..++.+||.+..        
T Consensus        13 ~~~~~~~i~~L---~~~~~~vr~~A~~~L~~~~---~~~~~~~L~~~l~~----~~~~vr~~a~~~L~~~~~--------   74 (201)
T 3ltj_A           13 PEKVEMYIKNL---QDDSYYVRRAAAYALGKIG---DERAVEPLIKALKD----EDAWVRRAAADALGQIGD--------   74 (201)
T ss_dssp             HHHHHHHHHHT---TCSCHHHHHHHHHHHHHHC---CGGGHHHHHHHTTC----SSHHHHHHHHHHHHHHCC--------
T ss_pred             CcchHHHHHHh---cCCCHHHHHHHHHHHHhcC---ChhHHHHHHHHHcC----CCHHHHHHHHHHHHhhCC--------
Confidence            45555555555   4444  5556666665443   34668888888753    579999999999988742        


Q ss_pred             hHHHHHHHHHhhccCCChhHHHHHHHHHHHhhhhhcCCcchhccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCCCchHH
Q 046417           95 HLSKMISTVSCRLRDPDSSVRSACVAATTAMSLNITKPSFSVLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNPEVE  174 (595)
Q Consensus        95 hLpkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~~~~~~~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d~~~~  174 (595)
                        +..++.+++.|.|+++.||.+++++|+.+...       ..+..|+..| .+.++.|+..|+.+|..+.+        
T Consensus        75 --~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~-------~~~~~L~~~l-~d~~~~vr~~a~~aL~~~~~--------  136 (201)
T 3ltj_A           75 --ERAVEPLIKALKDEDGWVRQSAAVALGQIGDE-------RAVEPLIKAL-KDEDWFVRIAAAFALGEIGD--------  136 (201)
T ss_dssp             --GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG-------GGHHHHHHHT-TCSSHHHHHHHHHHHHHHTC--------
T ss_pred             --HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCcH-------HHHHHHHHHH-cCCCHHHHHHHHHHHHHhCC--------
Confidence              25567888899999999999999999998652       1455666666 78899999999999988753        


Q ss_pred             HHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHhhcccCcCcHHhHHHHHHHhccCCCHHHHHHHHHHHHHHH
Q 046417          175 QLRKLLPRLGKAVRIEGFKAKAAVLGVIGSVVRVGGARSKGVLDWLVPCLVEFLCCDDWATRKAAAEVLGKVA  247 (595)
Q Consensus       175 ~L~~Ll~rL~klL~~~~~kaK~alLsAIgSlA~a~g~~~~~yl~~lmp~L~e~L~~dDW~~RkaAaEaLgsIA  247 (595)
                        +..++.|..+|++++..+|.+++.+++.+.          -+..++.|.+++.++++.+|.+|+++|+.|.
T Consensus       137 --~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~----------~~~~~~~L~~~l~d~~~~vr~~A~~aL~~l~  197 (201)
T 3ltj_A          137 --ERAVEPLIKALKDEDGWVRQSAADALGEIG----------GERVRAAMEKLAETGTGFARKVAVNYLETHK  197 (201)
T ss_dssp             --GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC----------SHHHHHHHHHHHHHCCHHHHHHHHHHHHHCC
T ss_pred             --HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------chhHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence              134566778888899899999888888762          1467888999999999999999999999874

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}

Probab=99.24  E-value=7.1e-11  Score=113.19  Aligned_cols=214  Identities=15%  Similarity=0.129  Sum_probs=152.8

Q ss_pred             ChHHHHHHHHHHHHHhCC--------cCcHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccchhhH-HHHHHHHH
Q 046417           34 DTLPVATAELESIARTLT--------QDSFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPHL-SKMISTVS  104 (595)
Q Consensus        34 DT~r~A~~~LD~lA~~L~--------~~~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~PhL-pkIL~~Iv  104 (595)
                      +.+..|+..|-.++..-+        ...++.++..|.+    .++.+|+.++.+|+.++....+.....+ ..+++.++
T Consensus        17 ~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~----~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~   92 (252)
T 4hxt_A           17 ETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTS----TDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLV   92 (252)
T ss_dssp             HHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTC----SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhC----CCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHH
Confidence            345556666666665432        2346777766654    4689999999999999976543322211 24688999


Q ss_pred             hhccCCChhHHHHHHHHHHHhhhhhcC--Ccch--hccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCCCchHHHH-HHH
Q 046417          105 CRLRDPDSSVRSACVAATTAMSLNITK--PSFS--VLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNPEVEQL-RKL  179 (595)
Q Consensus       105 rrLkD~ds~VR~Ac~~aLg~LA~~l~~--~~~~--~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d~~~~~L-~~L  179 (595)
                      +.|+++++.||..|+++|+.|+..-.+  ....  ..+++|+..| .+.+..++..|+.||..+....+.....++ ..+
T Consensus        93 ~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l-~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~  171 (252)
T 4hxt_A           93 KLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLL-TSTDSEVQKEAARALANIASGPDEAIKAIVDAGG  171 (252)
T ss_dssp             HHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHT-TCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTH
T ss_pred             HHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHH-cCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCcC
Confidence            999999999999999999999953211  0011  2577777777 678889999999999999875322111222 348


Q ss_pred             HHHHHHhhccCchhHHHHHHHHHHHHHHhhcccCcCcH-HhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhHH
Q 046417          180 LPRLGKAVRIEGFKAKAAVLGVIGSVVRVGGARSKGVL-DWLVPCLVEFLCCDDWATRKAAAEVLGKVAVFDKD  252 (595)
Q Consensus       180 l~rL~klL~~~~~kaK~alLsAIgSlA~a~g~~~~~yl-~~lmp~L~e~L~~dDW~~RkaAaEaLgsIA~avge  252 (595)
                      ++.|..+|.+++..++..++.+++.++.........+. ..+++.|.+++.+++..+|..|+.+|+.|+...+.
T Consensus       172 i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~  245 (252)
T 4hxt_A          172 VEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKSGGWL  245 (252)
T ss_dssp             HHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHTCBC
T ss_pred             HHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHcCCCc
Confidence            89999999999989999999999988742211101111 34789999999999999999999999999886643

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16

Probab=99.23  E-value=2.6e-10  Score=113.02  Aligned_cols=199  Identities=13%  Similarity=0.014  Sum_probs=142.7

Q ss_pred             cCcHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccchhhHHHHHHHHHhhccCCChhHHHHHHHHHHHhhhhhcC
Q 046417           52 QDSFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPHLSKMISTVSCRLRDPDSSVRSACVAATTAMSLNITK  131 (595)
Q Consensus        52 ~~~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~PhLpkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~~  131 (595)
                      ...++.++..|.+    +++.+|..++.+||.+..          +..++.+++.|+|+++.||.+++++||.+...-  
T Consensus        22 ~~~i~~L~~~L~~----~~~~vr~~A~~~L~~~~~----------~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~--   85 (280)
T 1oyz_A           22 KLNDDELFRLLDD----HNSLKRISSARVLQLRGG----------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICK--   85 (280)
T ss_dssp             TSCHHHHHHHTTC----SSHHHHHHHHHHHHHHCC----------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCT--
T ss_pred             HhhHHHHHHHHHc----CCHHHHHHHHHHHHccCC----------chHHHHHHHHHcCCCHHHHHHHHHHHHHhcccc--
Confidence            3458888887754    578999999999988752          467888899999999999999999999987421  


Q ss_pred             CcchhccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHhhcc
Q 046417          132 PSFSVLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNPEVEQLRKLLPRLGKAVRIEGFKAKAAVLGVIGSVVRVGGA  211 (595)
Q Consensus       132 ~~~~~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d~~~~~L~~Ll~rL~klL~~~~~kaK~alLsAIgSlA~a~g~  211 (595)
                      .....++..|...++.+.+..|+..|+.+|..+....+    .+.+.+++.|.++|++++..++.+++.++|.+..    
T Consensus        86 ~~~~~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~----~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~----  157 (280)
T 1oyz_A           86 KCEDNVFNILNNMALNDKSACVRATAIESTAQRCKKNP----IYSPKIVEQSQITAFDKSTNVRRATAFAISVIND----  157 (280)
T ss_dssp             TTHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCG----GGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC------
T ss_pred             ccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCC----cccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC----
Confidence            11111222233344578899999999999999875432    2445678888899999998888888777775431    


Q ss_pred             cCcCcHHhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHhH
Q 046417          212 RSKGVLDWLVPCLVEFLCCDDWATRKAAAEVLGKVAVFDKDLATEYKRSCLAALETRRFDKVKIVRETMNRSLEMWK  288 (595)
Q Consensus       212 ~~~~yl~~lmp~L~e~L~~dDW~~RkaAaEaLgsIA~avge~f~py~~~~I~~Le~crfDKVK~VRda~~~aL~~~K  288 (595)
                            +..+|.|.+.+.+++|.+|..|+.+|+.+....        +.++..|..+-.|.-..||..+..+|..+.
T Consensus       158 ------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~--------~~~~~~L~~~l~d~~~~vR~~A~~aL~~~~  220 (280)
T 1oyz_A          158 ------KATIPLLINLLKDPNGDVRNWAAFAININKYDN--------SDIRDCFVEMLQDKNEEVRIEAIIGLSYRK  220 (280)
T ss_dssp             -------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCC--------HHHHHHHHHHTTCSCHHHHHHHHHHHHHTT
T ss_pred             ------HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCc--------HHHHHHHHHHhcCCCHHHHHHHHHHHHHhC
Confidence                  236788888999999999999999998873111        112223333334777889998888887653

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}

Probab=99.22  E-value=4e-11  Score=116.17  Aligned_cols=213  Identities=11%  Similarity=0.141  Sum_probs=154.0

Q ss_pred             CCCChHHHHHHHHHHHHHh--------CCcCcHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccchhhHH-HHHH
Q 046417           31 ADRDTLPVATAELESIART--------LTQDSFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPHLS-KMIS  101 (595)
Q Consensus        31 ~DrDT~r~A~~~LD~lA~~--------L~~~~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~PhLp-kIL~  101 (595)
                      +|.+.+..|+..|-.+...        +....++.++..|.+    .++.+|.+++.+|+.++.+..+.....+. .+++
T Consensus        24 ~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~----~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~   99 (252)
T 4db8_A           24 DDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSS----PNEQILQEALWALSNIASGGNEQIQAVIDAGALP   99 (252)
T ss_dssp             SCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGC----SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHH
T ss_pred             CCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcC----CCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHH
Confidence            4667888899999554432        123346777777764    45899999999999999876544322222 3789


Q ss_pred             HHHhhccCCChhHHHHHHHHHHHhhhhhcCC-c-ch--hccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCCCchHHHH-
Q 046417          102 TVSCRLRDPDSSVRSACVAATTAMSLNITKP-S-FS--VLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNPEVEQL-  176 (595)
Q Consensus       102 ~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~~~-~-~~--~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d~~~~~L-  176 (595)
                      .+++.|+++++.||..|+++|+.|+..-... . ..  ..+++|+..| .+.+..++..|+.||..+....+......+ 
T Consensus       100 ~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~  178 (252)
T 4db8_A          100 ALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLL-SSPNEQILQEALWALSNIASGGNEQIQAVID  178 (252)
T ss_dssp             HHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGG-GCSCHHHHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHH-hCCCHHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence            9999999999999999999999998643111 1 11  1667777777 677889999999999999875422211222 


Q ss_pred             HHHHHHHHHhhccCchhHHHHHHHHHHHHHHhhcccCcCcH-HhHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Q 046417          177 RKLLPRLGKAVRIEGFKAKAAVLGVIGSVVRVGGARSKGVL-DWLVPCLVEFLCCDDWATRKAAAEVLGKVAV  248 (595)
Q Consensus       177 ~~Ll~rL~klL~~~~~kaK~alLsAIgSlA~a~g~~~~~yl-~~lmp~L~e~L~~dDW~~RkaAaEaLgsIA~  248 (595)
                      ..+++.|+.+|++++..++..++.+++.++.........++ ..+++.|.+.+.+.+..+|..|+.+|+.|+.
T Consensus       179 ~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l~~  251 (252)
T 4db8_A          179 AGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS  251 (252)
T ss_dssp             TTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTTC-
T ss_pred             CCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHHhc
Confidence            34789999999999999999999999988732211111112 2378999999999999999999999998764

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}

Probab=99.20  E-value=4.1e-10  Score=106.97  Aligned_cols=176  Identities=18%  Similarity=0.224  Sum_probs=132.3

Q ss_pred             cCCCC--hHHHHHHHHHHHHHhCCcCcHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccchhhHHHHHHHHHhhc
Q 046417           30 LADRD--TLPVATAELESIARTLTQDSFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPHLSKMISTVSCRL  107 (595)
Q Consensus        30 L~DrD--T~r~A~~~LD~lA~~L~~~~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~PhLpkIL~~IvrrL  107 (595)
                      |.|.|  .+..|+..|-.+   -+++.++.++..|.+    +++.+|..++.+||.+..          +..++.+++.|
T Consensus        28 L~~~~~~vR~~A~~~L~~~---~~~~~~~~L~~~l~~----~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l   90 (211)
T 3ltm_A           28 LQDDSYYVRRAAAYALGKI---GDERAVEPLIKALKD----EDAWVRRAAADALGQIGD----------ERAVEPLIKAL   90 (211)
T ss_dssp             TTCSSHHHHHHHHHHHHHH---CCGGGHHHHHHHTTC----SCHHHHHHHHHHHHHHCC----------GGGHHHHHHHT
T ss_pred             HcCCCHHHHHHHHHHHHHh---CCccHHHHHHHHHcC----CCHHHHHHHHHHHHhhCC----------HHHHHHHHHHH
Confidence            34544  444455555443   345678888887764    479999999999988752          35667888899


Q ss_pred             cCCChhHHHHHHHHHHHhhhhhcCCcchhccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhh
Q 046417          108 RDPDSSVRSACVAATTAMSLNITKPSFSVLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNPEVEQLRKLLPRLGKAV  187 (595)
Q Consensus       108 kD~ds~VR~Ac~~aLg~LA~~l~~~~~~~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d~~~~~L~~Ll~rL~klL  187 (595)
                      +|+++.||.+++++|+.+...       ..+..|+..| .+.++.|+..|+.+|..+.+.          ..++.|.++|
T Consensus        91 ~~~~~~vr~~a~~aL~~~~~~-------~~~~~L~~~l-~d~~~~vr~~a~~aL~~~~~~----------~~~~~L~~~l  152 (211)
T 3ltm_A           91 KDEDGWVRQSAAVALGQIGDE-------RAVEPLIKAL-KDEDWFVRIAAAFALGEIGDE----------RAVEPLIKAL  152 (211)
T ss_dssp             TCSSHHHHHHHHHHHHHHCCG-------GGHHHHHHHT-TCSSHHHHHHHHHHHHHHCCG----------GGHHHHHHHT
T ss_pred             cCCCHHHHHHHHHHHHHhCcH-------HHHHHHHHHH-hCCCHHHHHHHHHHHHHcCCH----------HHHHHHHHHH
Confidence            999999999999999998652       1456666665 789999999999999887431          3456677788


Q ss_pred             ccCchhHHHHHHHHHHHHHHhhcccCcCcHHhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHh
Q 046417          188 RIEGFKAKAAVLGVIGSVVRVGGARSKGVLDWLVPCLVEFLCCDDWATRKAAAEVLGKVAVFD  250 (595)
Q Consensus       188 ~~~~~kaK~alLsAIgSlA~a~g~~~~~yl~~lmp~L~e~L~~dDW~~RkaAaEaLgsIA~av  250 (595)
                      ++++..++.+++.+++.+.          -+..++.|.+++.++++.+|..|+++|+.+....
T Consensus       153 ~d~~~~vr~~a~~aL~~~~----------~~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~~~  205 (211)
T 3ltm_A          153 KDEDGWVRQSAADALGEIG----------GERVRAAMEKLAETGTGFARKVAVNYLETHKSFN  205 (211)
T ss_dssp             TCSSHHHHHHHHHHHHHHC----------SHHHHHHHHHHHHHCCHHHHHHHHHHHHC-----
T ss_pred             cCCCHHHHHHHHHHHHHhC----------chhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCC
Confidence            8889899988888888652          1567888999999999999999999999886544

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A

Probab=99.18  E-value=1.7e-10  Score=108.99  Aligned_cols=189  Identities=11%  Similarity=0.134  Sum_probs=140.7

Q ss_pred             HHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccchhhH-HHHHHHHHhhccCCChhHHHHHHHHHHHhhhhhcC--
Q 046417           55 FSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPHL-SKMISTVSCRLRDPDSSVRSACVAATTAMSLNITK--  131 (595)
Q Consensus        55 lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~PhL-pkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~~--  131 (595)
                      .+.++..|.    ++++.+|..++.+|+.++.+..+.....+ ..+++.+++.|+++++.||..++++|+.|+..-..  
T Consensus        14 ~~~l~~LL~----s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~   89 (210)
T 4db6_A           14 LPQMVQQLN----SPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQI   89 (210)
T ss_dssp             HHHHHHHTT----CSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred             hHHHHHHhc----CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHH
Confidence            555555554    35799999999999999977655432222 25789999999999999999999999999853211  


Q ss_pred             Ccch--hccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCCCchHHHHH-HHHHHHHHhhccCchhHHHHHHHHHHHHHHh
Q 046417          132 PSFS--VLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNPEVEQLR-KLLPRLGKAVRIEGFKAKAAVLGVIGSVVRV  208 (595)
Q Consensus       132 ~~~~--~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d~~~~~L~-~Ll~rL~klL~~~~~kaK~alLsAIgSlA~a  208 (595)
                      ....  -.+++|+..| .+.++.++..|+.+|..+....++.....+. .+++.|+++|++++..++..++.+++.++..
T Consensus        90 ~~i~~~g~i~~L~~lL-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~  168 (210)
T 4db6_A           90 QAVIDAGALPALVQLL-SSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG  168 (210)
T ss_dssp             HHHHHTTCHHHHHHHT-TCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTS
T ss_pred             HHHHHCCCHHHHHHHH-cCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence            0111  1677788777 7788999999999999998753222222332 4889999999999999999999999988854


Q ss_pred             hcccCcCcH-HhHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Q 046417          209 GGARSKGVL-DWLVPCLVEFLCCDDWATRKAAAEVLGKVAV  248 (595)
Q Consensus       209 ~g~~~~~yl-~~lmp~L~e~L~~dDW~~RkaAaEaLgsIA~  248 (595)
                      ......... ...++.|.+.+.+++..+|..|+.+|..++.
T Consensus       169 ~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~  209 (210)
T 4db6_A          169 GNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS  209 (210)
T ss_dssp             CHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred             CcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence            222111111 3478999999999999999999999998863

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B

Probab=99.18  E-value=7.8e-09  Score=114.68  Aligned_cols=251  Identities=15%  Similarity=0.119  Sum_probs=172.4

Q ss_pred             hhcCCCChHHHHHHHHHHHHHhCCcCcHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccchhhHHHHHHHHHhhc
Q 046417           28 NKLADRDTLPVATAELESIARTLTQDSFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPHLSKMISTVSCRL  107 (595)
Q Consensus        28 ~KL~DrDT~r~A~~~LD~lA~~L~~~~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~PhLpkIL~~IvrrL  107 (595)
                      .-|.|.++.--++ +|..|+..-.++..+.+++.|.....+.+|.+|+.|+.+++.+++..++.+..  +.+++.+...|
T Consensus        93 kdL~~~n~~ir~~-AL~~L~~i~~~~~~~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~~~~--~~~~~~l~~lL  169 (591)
T 2vgl_B           93 KDCEDPNPLIRAL-AVRTMGCIRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMVED--QGFLDSLRDLI  169 (591)
T ss_dssp             GGSSSSSHHHHHH-HHHHHHTCCSGGGHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCCHHH--HHHHHHHHHTT
T ss_pred             HHcCCCCHHHHHH-HHHHHHcCChHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChhhccc--ccHHHHHHHHh
Confidence            3467777543322 26677776667778887887877777889999999999999999987775432  46889999999


Q ss_pred             cCCChhHHHHHHHHHHHhhhhhcCC---cch-hccHH---------------------------------HHHHH---hh
Q 046417          108 RDPDSSVRSACVAATTAMSLNITKP---SFS-VLSKP---------------------------------LIELI---LV  147 (595)
Q Consensus       108 kD~ds~VR~Ac~~aLg~LA~~l~~~---~~~-~~l~P---------------------------------Li~aL---l~  147 (595)
                      .|+++.|+.+|+.+|+.++..-.+.   ... ..+..                                 +++.|   +.
T Consensus       170 ~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~~~~~~l~~l~~~l~  249 (591)
T 2vgl_B          170 ADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDREAQSICERVTPRLS  249 (591)
T ss_dssp             SCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHHHHHHHHHHHTTCSC
T ss_pred             CCCChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHc
Confidence            9999999999999999998653211   000 01222                                 22222   13


Q ss_pred             cCChhHHHHHHHHHHHHHhcC---CCchHHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHhhcccCc----------
Q 046417          148 EQDVNSQVGGAMCLAAAIDAA---PNPEVEQLRKLLPRLGKAVRIEGFKAKAAVLGVIGSVVRVGGARSK----------  214 (595)
Q Consensus       148 d~nk~VQ~~AA~cLaaviE~a---~d~~~~~L~~Ll~rL~klL~~~~~kaK~alLsAIgSlA~a~g~~~~----------  214 (595)
                      +.+..|...|+.|+-.+....   ++.....+..+.+.|..++. +...+|-.++.+++.++......+.          
T Consensus       250 ~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~~~~~~~~L~~L~~-~d~~vr~~aL~~l~~i~~~~p~~~~~~~~~~~~~~  328 (591)
T 2vgl_B          250 HANSAVVLSAVKVLMKFLELLPKDSDYYNMLLKKLAPPLVTLLS-GEPEVQYVALRNINLIVQKRPEILKQEIKVFFVKY  328 (591)
T ss_dssp             SSTTHHHHHHHHHHHHSCCSCCBTTBSHHHHHHHTHHHHHHHTT-SCHHHHHHHHHHHHHHHHHCCSTTTTCTTTTSCCT
T ss_pred             CCChHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHhc-CCccHHHHHHHHHHHHHHhChHHHHHHHHhheecc
Confidence            456667777777766665432   22223345667777776665 5667888888888888864322111          


Q ss_pred             --------------------CcHHhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHhccCCchH
Q 046417          215 --------------------GVLDWLVPCLVEFLCCDDWATRKAAAEVLGKVAVFDKDLATEYKRSCLAALETRRFDKVK  274 (595)
Q Consensus       215 --------------------~yl~~lmp~L~e~L~~dDW~~RkaAaEaLgsIA~avge~f~py~~~~I~~Le~crfDKVK  274 (595)
                                          .-++.+++.|.+++.+.||..|+.++.+|+.+|......+..+.+.++.+|.    |+..
T Consensus       329 ~d~~~Ir~~al~~L~~l~~~~nv~~iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~~~~~~~~v~~Ll~ll~----~~~~  404 (591)
T 2vgl_B          329 NDPIYVKLEKLDIMIRLASQANIAQVLAELKEYATEVDVDFVRKAVRAIGRCAIKVEQSAERCVSTLLDLIQ----TKVN  404 (591)
T ss_dssp             TSCHHHHHHHHHHHHHTCCSSTHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH----TCCH
T ss_pred             CChHHHHHHHHHHHHHHCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHc----ccch
Confidence                                1234578888899999999999999999999998765555556666666676    6677


Q ss_pred             HHHHHHHHHHHH
Q 046417          275 IVRETMNRSLEM  286 (595)
Q Consensus       275 ~VRda~~~aL~~  286 (595)
                      .|+..+..+|..
T Consensus       405 ~v~~e~i~~l~~  416 (591)
T 2vgl_B          405 YVVQEAIVVIRD  416 (591)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            777766655543

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16

Probab=99.17  E-value=2.4e-09  Score=106.01  Aligned_cols=214  Identities=13%  Similarity=0.054  Sum_probs=131.3

Q ss_pred             cCCCC--hHHHHHHHHHHHHHhCCcCcHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccchhhHHHHHHHHH-hh
Q 046417           30 LADRD--TLPVATAELESIARTLTQDSFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPHLSKMISTVS-CR  106 (595)
Q Consensus        30 L~DrD--T~r~A~~~LD~lA~~L~~~~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~PhLpkIL~~Iv-rr  106 (595)
                      |.|.|  .+..|+..|-.+.   .++.++.++.++.+    +++.+|..++.+||.+..  ..   ..++.+++.+. ..
T Consensus        32 L~~~~~~vr~~A~~~L~~~~---~~~~~~~L~~~l~d----~~~~vR~~A~~aL~~l~~--~~---~~~~~l~~~L~~~~   99 (280)
T 1oyz_A           32 LDDHNSLKRISSARVLQLRG---GQDAVRLAIEFCSD----KNYIRRDIGAFILGQIKI--CK---KCEDNVFNILNNMA   99 (280)
T ss_dssp             TTCSSHHHHHHHHHHHHHHC---CHHHHHHHHHHHTC----SSHHHHHHHHHHHHHSCC--CT---TTHHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHccC---CchHHHHHHHHHcC----CCHHHHHHHHHHHHHhcc--cc---ccchHHHHHHHHHH
Confidence            45555  3445555555543   34457777766653    467888888888877642  11   12445666666 35


Q ss_pred             ccCCChhHHHHHHHHHHHhhhhhcCCcch-hccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHH
Q 046417          107 LRDPDSSVRSACVAATTAMSLNITKPSFS-VLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNPEVEQLRKLLPRLGK  185 (595)
Q Consensus       107 LkD~ds~VR~Ac~~aLg~LA~~l~~~~~~-~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d~~~~~L~~Ll~rL~k  185 (595)
                      ++|+++.||.+++++||.++....  ... .++..|+..| .+.++.|+..|+.+|..+...          ..++.|.+
T Consensus       100 ~~d~~~~vr~~a~~aL~~l~~~~~--~~~~~~~~~L~~~l-~d~~~~vR~~a~~aL~~~~~~----------~~~~~L~~  166 (280)
T 1oyz_A          100 LNDKSACVRATAIESTAQRCKKNP--IYSPKIVEQSQITA-FDKSTNVRRATAFAISVINDK----------ATIPLLIN  166 (280)
T ss_dssp             HHCSCHHHHHHHHHHHHHHHHHCG--GGHHHHHHHHHHHT-TCSCHHHHHHHHHHHHTC-------------CCHHHHHH
T ss_pred             hcCCCHHHHHHHHHHHHHHhccCC--cccHHHHHHHHHHh-hCCCHHHHHHHHHHHHhcCCH----------HHHHHHHH
Confidence            788888888888888888875321  111 2455555555 677888888888877655431          24566667


Q ss_pred             hhccCchhHHHHHHHHHHHHHHhhcccCcCcHHhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHH
Q 046417          186 AVRIEGFKAKAAVLGVIGSVVRVGGARSKGVLDWLVPCLVEFLCCDDWATRKAAAEVLGKVAVFDKDLATEYKRSCLAAL  265 (595)
Q Consensus       186 lL~~~~~kaK~alLsAIgSlA~a~g~~~~~yl~~lmp~L~e~L~~dDW~~RkaAaEaLgsIA~avge~f~py~~~~I~~L  265 (595)
                      +|++++..+|..++.+++.+.    .    .-+.+++.|.+.+.++++.+|..|+.+|+.+..   +.   ..+.++..|
T Consensus       167 ~l~d~~~~vr~~a~~aL~~~~----~----~~~~~~~~L~~~l~d~~~~vR~~A~~aL~~~~~---~~---~~~~L~~~l  232 (280)
T 1oyz_A          167 LLKDPNGDVRNWAAFAININK----Y----DNSDIRDCFVEMLQDKNEEVRIEAIIGLSYRKD---KR---VLSVLCDEL  232 (280)
T ss_dssp             HHTCSSHHHHHHHHHHHHHHT----C----CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTC---GG---GHHHHHHHH
T ss_pred             HHcCCCHHHHHHHHHHHHhhc----c----CcHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCC---Hh---hHHHHHHHh
Confidence            777777778877777776541    1    124567778888888888888888888887751   11   122333444


Q ss_pred             HhccCCchHHHHHHHHHHHHHhH
Q 046417          266 ETRRFDKVKIVRETMNRSLEMWK  288 (595)
Q Consensus       266 e~crfDKVK~VRda~~~aL~~~K  288 (595)
                      ..    .  .||..+.++|..+.
T Consensus       233 ~d----~--~vr~~a~~aL~~i~  249 (280)
T 1oyz_A          233 KK----N--TVYDDIIEAAGELG  249 (280)
T ss_dssp             TS----S--SCCHHHHHHHHHHC
T ss_pred             cC----c--cHHHHHHHHHHhcC
Confidence            42    1  16666666665543

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}

Probab=99.14  E-value=6.3e-10  Score=107.72  Aligned_cols=230  Identities=11%  Similarity=0.127  Sum_probs=160.5

Q ss_pred             CcHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccchhhH-HHHHHHHHhhccCCChhHHHHHHHHHHHhhhhhcC
Q 046417           53 DSFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPHL-SKMISTVSCRLRDPDSSVRSACVAATTAMSLNITK  131 (595)
Q Consensus        53 ~~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~PhL-pkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~~  131 (595)
                      ..++.|+..|.+    .++.+|..++.+|..+.....+.....+ ..+++.+++.|+++++.||..++++|+.++..-.+
T Consensus        12 ~~~~~~~~~L~s----~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~   87 (252)
T 4db8_A           12 SELPQMTQQLNS----DDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE   87 (252)
T ss_dssp             CSHHHHHHHHHS----SCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHH
T ss_pred             chHHHHHHHHcC----CCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHH
Confidence            348888888875    4578999999999655544433222111 25789999999999999999999999999963211


Q ss_pred             --Ccch--hccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCCCchHHHHH-HHHHHHHHhhccCchhHHHHHHHHHHHHH
Q 046417          132 --PSFS--VLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNPEVEQLR-KLLPRLGKAVRIEGFKAKAAVLGVIGSVV  206 (595)
Q Consensus       132 --~~~~--~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d~~~~~L~-~Ll~rL~klL~~~~~kaK~alLsAIgSlA  206 (595)
                        ....  -.+++|+..| .+.+..++..|+.+|..+..........++. .+++.|.++|++++..++..++.+++.++
T Consensus        88 ~~~~i~~~g~i~~L~~lL-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~  166 (252)
T 4db8_A           88 QIQAVIDAGALPALVQLL-SSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIA  166 (252)
T ss_dssp             HHHHHHHTTHHHHHHHGG-GCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHcCCHHHHHHHH-cCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence              0111  1567777777 6788999999999999998754322122333 48899999999999999999889998887


Q ss_pred             HhhcccCcCc-HHhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhHHhHHHHH-HHHHHHHHhccCCchHHHHHHHHHHH
Q 046417          207 RVGGARSKGV-LDWLVPCLVEFLCCDDWATRKAAAEVLGKVAVFDKDLATEYK-RSCLAALETRRFDKVKIVRETMNRSL  284 (595)
Q Consensus       207 ~a~g~~~~~y-l~~lmp~L~e~L~~dDW~~RkaAaEaLgsIA~avge~f~py~-~~~I~~Le~crfDKVK~VRda~~~aL  284 (595)
                      .......... -..++|.|.+.+.+++..+|..|+.+|+.|+....+....+. ..+++.|...-.+.-..||..+..+|
T Consensus       167 ~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L  246 (252)
T 4db8_A          167 SGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEAL  246 (252)
T ss_dssp             TSCHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHH
T ss_pred             cCChHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHH
Confidence            4321110111 145789999999999999999999999999853322222221 23455555555566678888888877


Q ss_pred             HHh
Q 046417          285 EMW  287 (595)
Q Consensus       285 ~~~  287 (595)
                      .-+
T Consensus       247 ~~l  249 (252)
T 4db8_A          247 EKL  249 (252)
T ss_dssp             HTT
T ss_pred             HHH
Confidence            543

>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A

Probab=99.10  E-value=1.1e-09  Score=130.18  Aligned_cols=223  Identities=6%  Similarity=-0.085  Sum_probs=165.9

Q ss_pred             HHHHHHHHHHHHHhCCcCcHHHHHHhhhhcCC--CCChHHHHHHHHHHHHHHHHccc--cchhhHHHHHHHHHhhccCC-
Q 046417           36 LPVATAELESIARTLTQDSFSSFLNCLQTTDS--SSKSPVRKQCVNLLTLLSRSHGD--SLSPHLSKMISTVSCRLRDP-  110 (595)
Q Consensus        36 ~r~A~~~LD~lA~~L~~~~lp~fL~~L~d~~s--s~kp~vRKaaI~lLG~lAEg~gd--~I~PhLpkIL~~IvrrLkD~-  110 (595)
                      +++--+.|..++.-.+.+.+..+++.|....+  ...|..+++.+-++|.+| |+..  .-.++||+||+.++.....+ 
T Consensus       456 y~~mrd~L~~lt~l~~~~~~~i~~~~l~~~~~~~~~sW~~lea~~~aigaIa-g~~~~~~E~~~Lp~vi~~Ll~L~e~~~  534 (1073)
T 3gjx_A          456 YKNMRETLVYLTHLDYVDTEIIMTKKLQNQVNGTEWSWKNLNTLCWAIGSIS-GAMHEEDEKRFLVTVIKDLLGLCEQKR  534 (1073)
T ss_dssp             HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHTSCCCCHHHHHHHHHHHHHTT-TSSCHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCCHHHHhHHHHHHHHHH-CcCCcccccchHHHHHHHHhccccccc
Confidence            34555566666533334458888888865433  346999999999999999 5543  34789999999999887544 


Q ss_pred             ----ChhHHHHHHHHHHHhhhhhcCCcchhccHHHHHHHh---hcCChhHHHHHHHHHHHHHhcCCCch--------HHH
Q 046417          111 ----DSSVRSACVAATTAMSLNITKPSFSVLSKPLIELIL---VEQDVNSQVGGAMCLAAAIDAAPNPE--------VEQ  175 (595)
Q Consensus       111 ----ds~VR~Ac~~aLg~LA~~l~~~~~~~~l~PLi~aLl---~d~nk~VQ~~AA~cLaaviE~a~d~~--------~~~  175 (595)
                          .+.|+...||++|++.+|+...  ..||+|++..|+   .+.++.||.+||.||..+++.+....        .||
T Consensus       535 ~kd~k~~vas~i~~vlgrY~~wl~~h--~~~L~~vl~~L~~~m~~~~~~vq~aA~~af~~i~~~C~~~lv~~~~~e~~p~  612 (1073)
T 3gjx_A          535 GKDNKAIIASNIMYIVGQYPRFLRAH--WKFLKTVVNKLFEFMHETHDGVQDMACDTFIKIAQKCRRHFVQVQVGEVMPF  612 (1073)
T ss_dssp             SHHHHHHHHHHHHHHHHHCHHHHHHC--HHHHHHHHHHHHHHTTCCSTTHHHHHHHHHHHHHHHTGGGGTSCCTTCSSCH
T ss_pred             ccchhHHHHHHHHHHHhhhHHHHHhC--HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhhccccccchH
Confidence                5678999999999999999632  247788777775   47789999999999999999975432        368


Q ss_pred             HHHHHHHHHHhhccCchhHHHHHHHHHHHHHHhhccc--CcCcHHhHHHHHHHhcc--------------CCCH-HHHHH
Q 046417          176 LRKLLPRLGKAVRIEGFKAKAAVLGVIGSVVRVGGAR--SKGVLDWLVPCLVEFLC--------------CDDW-ATRKA  238 (595)
Q Consensus       176 L~~Ll~rL~klL~~~~~kaK~alLsAIgSlA~a~g~~--~~~yl~~lmp~L~e~L~--------------~dDW-~~Rka  238 (595)
                      ++.|+..+......=..+....+++++|.++.+.+..  -..|+..+|+.+.+.|.              +.++ ..-..
T Consensus       613 i~~il~~~~~~~~~l~~~~~~~lyeav~~vi~~~p~~~~~~~~i~~Lm~~~~~~w~~l~~~~~~~~~~~~d~~~i~~l~~  692 (1073)
T 3gjx_A          613 IDEILNNINTIICDLQPQQVHTFYEAVGYMIGAQTDQTVQEHLIEKYMLLPNQVWDSIIQQATKNVDILKDPETVKQLGS  692 (1073)
T ss_dssp             HHHHHTSHHHHHTTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCchhccChHHHHHHHH
Confidence            8998888887775444555567789999999865432  36788889998888873              1222 23455


Q ss_pred             HHHHHHHHHHHhHHhHHHHHHHH
Q 046417          239 AAEVLGKVAVFDKDLATEYKRSC  261 (595)
Q Consensus       239 AaEaLgsIA~avge~f~py~~~~  261 (595)
                      .++|..+++.++|..|.+++..+
T Consensus       693 il~~n~~v~~~~g~~f~~~~~~i  715 (1073)
T 3gjx_A          693 ILKTNVRACKAVGHPFVIQLGRI  715 (1073)
T ss_dssp             HHHHHHHHHHHHCGGGHHHHHHH
T ss_pred             HHhhhHHHHhhcchhHHHHHHHH
Confidence            67889999999999888887655

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B

Probab=99.02  E-value=9.2e-09  Score=112.24  Aligned_cols=250  Identities=11%  Similarity=0.084  Sum_probs=178.3

Q ss_pred             HHHHHHHHHHHHhCCc-Cc---HHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccchhh-HHHHHHHHHhhccCCC
Q 046417           37 PVATAELESIARTLTQ-DS---FSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPH-LSKMISTVSCRLRDPD  111 (595)
Q Consensus        37 r~A~~~LD~lA~~L~~-~~---lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~Ph-LpkIL~~IvrrLkD~d  111 (595)
                      +.|+..|-.++..-.+ ..   +..+++.|.....+.++.++..++.+|+.++.+..+.+.-. -..+++.++..|.+++
T Consensus       227 ~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~  306 (529)
T 3tpo_A          227 RNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATE  306 (529)
T ss_dssp             HHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSC
T ss_pred             HHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCC
Confidence            4455666666654322 11   34556666665666789999999999999998776543221 1356788899999999


Q ss_pred             hhHHHHHHHHHHHhhhhhcCC--cch--hccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCCCchHHHHH-HHHHHHHHh
Q 046417          112 SSVRSACVAATTAMSLNITKP--SFS--VLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNPEVEQLR-KLLPRLGKA  186 (595)
Q Consensus       112 s~VR~Ac~~aLg~LA~~l~~~--~~~--~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d~~~~~L~-~Ll~rL~kl  186 (595)
                      +.|+..|+.+|+.++..-...  ...  ..+.+|+..| .+.+..++..||.+|..+..+..+.....+. .++|.|+.+
T Consensus       307 ~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL-~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~l  385 (529)
T 3tpo_A          307 LPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLL-TNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGV  385 (529)
T ss_dssp             HHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHT-TCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHH-cCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHH
Confidence            999999999999998532110  011  2667777766 7788899999999999998754332222333 488999999


Q ss_pred             hccCchhHHHHHHHHHHHHHHhhcccCcCcH--HhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhH-----HhHHHHHH
Q 046417          187 VRIEGFKAKAAVLGVIGSVVRVGGARSKGVL--DWLVPCLVEFLCCDDWATRKAAAEVLGKVAVFDK-----DLATEYKR  259 (595)
Q Consensus       187 L~~~~~kaK~alLsAIgSlA~a~g~~~~~yl--~~lmp~L~e~L~~dDW~~RkaAaEaLgsIA~avg-----e~f~py~~  259 (595)
                      |.+..+.++..++.+|+.++..+......|+  ..+++.|.+.|.+.|..++..++++|..|.....     +.+..+..
T Consensus       386 L~~~~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~ie  465 (529)
T 3tpo_A          386 LSKADFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIE  465 (529)
T ss_dssp             HHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred             hcCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccChHHHHHHHH
Confidence            9999999998888899888754422211222  2368999999999999999999999999976432     22333333


Q ss_pred             H--HHHHHHhccCCchHHHHHHHHHHHHHh
Q 046417          260 S--CLAALETRRFDKVKIVRETMNRSLEMW  287 (595)
Q Consensus       260 ~--~I~~Le~crfDKVK~VRda~~~aL~~~  287 (595)
                      .  .+..++..++.+-.-|++.+..-|+.|
T Consensus       466 e~ggl~~ie~Lq~~~n~~i~~~A~~iie~y  495 (529)
T 3tpo_A          466 ECGGLDKIEALQRHENESVYKASLNLIEKY  495 (529)
T ss_dssp             HTTCHHHHTGGGGCSSHHHHHHHHHHHHHH
T ss_pred             HCCcHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence            3  377788888888899999888888766

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1

Probab=98.96  E-value=1.7e-08  Score=112.93  Aligned_cols=243  Identities=14%  Similarity=0.102  Sum_probs=152.5

Q ss_pred             cCCCC--hHHHHHHHHHHHHHhCCcCcHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccchhhHHHHHHHHHhhc
Q 046417           30 LADRD--TLPVATAELESIARTLTQDSFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPHLSKMISTVSCRL  107 (595)
Q Consensus        30 L~DrD--T~r~A~~~LD~lA~~L~~~~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~PhLpkIL~~IvrrL  107 (595)
                      |.|.+  .+..|+..|-.++   .++.++.+++.|.....+.+|.+||.|+.+++.+...+++.+.    .+++.+...|
T Consensus       116 L~~~n~~vr~lAL~~L~~i~---~~~~~~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~v~----~~~~~l~~lL  188 (618)
T 1w63_A          116 LNHSTQFVQGLALCTLGCMG---SSEMCRDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELME----MFLPATKNLL  188 (618)
T ss_dssp             HSCSSSHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGGGG----GGGGGTTTST
T ss_pred             cCCCCHhHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHHHH----HHHHHHHHHh
Confidence            34444  2333445544443   4555666666666666667899999999999999999998653    5677888999


Q ss_pred             cCCChhHHHHHHHHHHHhhhhhcC--CcchhccHHHHHHHhh--------------cCChhHHHHHHHHHHHHHhcCCCc
Q 046417          108 RDPDSSVRSACVAATTAMSLNITK--PSFSVLSKPLIELILV--------------EQDVNSQVGGAMCLAAAIDAAPNP  171 (595)
Q Consensus       108 kD~ds~VR~Ac~~aLg~LA~~l~~--~~~~~~l~PLi~aLl~--------------d~nk~VQ~~AA~cLaaviE~a~d~  171 (595)
                      .|+|+.|+.+|+.+|+.++..-.+  ..+..+++.|+..|..              ..++-.|....-+|..++...+. 
T Consensus       189 ~D~d~~V~~~Al~~L~~i~~~~~~~~~~~~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~-  267 (618)
T 1w63_A          189 NEKNHGVLHTSVVLLTEMCERSPDMLAHFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDD-  267 (618)
T ss_dssp             TCCCHHHHHHHHHHHHHHCCSHHHHHHHHHTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHH-
T ss_pred             CCCCHhHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHH-
Confidence            999999999999999999854311  0111234445554421              24788888888888877753211 


Q ss_pred             hHHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHhhcccCcCcHHhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhH
Q 046417          172 EVEQLRKLLPRLGKAVRIEGFKAKAAVLGVIGSVVRVGGARSKGVLDWLVPCLVEFLCCDDWATRKAAAEVLGKVAVFDK  251 (595)
Q Consensus       172 ~~~~L~~Ll~rL~klL~~~~~kaK~alLsAIgSlA~a~g~~~~~yl~~lmp~L~e~L~~dDW~~RkaAaEaLgsIA~avg  251 (595)
                      ..+.+..++.++.+-+....-...+.++.++..+......  ......++..|..++.+.|-.+|..|+.+|+.|+...+
T Consensus       268 ~~~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~~~--~~l~~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p  345 (618)
T 1w63_A          268 SSEAMNDILAQVATNTETSKNVGNAILYETVLTIMDIKSE--SGLRVLAINILGRFLLNNDKNIRYVALTSLLKTVQTDH  345 (618)
T ss_dssp             HHHTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHSCCC--HHHHHHHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhcCCC--HHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHhhCH
Confidence            1122233444443322221112234455666666653221  22234567888888887777888888888888888777


Q ss_pred             HhHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHH
Q 046417          252 DLATEYKRSCLAALETRRFDKVKIVRETMNRSLEM  286 (595)
Q Consensus       252 e~f~py~~~~I~~Le~crfDKVK~VRda~~~aL~~  286 (595)
                      +.+.+|...    +..|.+|.-..||..+.+.|-.
T Consensus       346 ~~~~~~~~~----i~~~l~d~d~~Ir~~alelL~~  376 (618)
T 1w63_A          346 NAVQRHRST----IVDCLKDLDVSIKRRAMELSFA  376 (618)
T ss_dssp             HHHGGGHHH----HHHGGGSSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHH----HHHHccCCChhHHHHHHHHHHH
Confidence            777766554    3345457777788765554433

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...

Probab=98.94  E-value=1.3e-08  Score=110.92  Aligned_cols=250  Identities=11%  Similarity=0.081  Sum_probs=175.3

Q ss_pred             HHHHHHHHHHHHhCCcC-c---HHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccchhh-HHHHHHHHHhhccCCC
Q 046417           37 PVATAELESIARTLTQD-S---FSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPH-LSKMISTVSCRLRDPD  111 (595)
Q Consensus        37 r~A~~~LD~lA~~L~~~-~---lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~Ph-LpkIL~~IvrrLkD~d  111 (595)
                      +.++..|-.++..-.+. .   +..+++.|.....+.++.++..++.+|..++.+..+.+.-. -..+++.++..|++++
T Consensus       208 ~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~  287 (510)
T 3ul1_B          208 RNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATE  287 (510)
T ss_dssp             HHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSC
T ss_pred             HHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCC
Confidence            44555666665543211 1   34556666666667789999999999999998765443211 1246788899999999


Q ss_pred             hhHHHHHHHHHHHhhhhhcCC--cch--hccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCCCchHHHHH-HHHHHHHHh
Q 046417          112 SSVRSACVAATTAMSLNITKP--SFS--VLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNPEVEQLR-KLLPRLGKA  186 (595)
Q Consensus       112 s~VR~Ac~~aLg~LA~~l~~~--~~~--~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d~~~~~L~-~Ll~rL~kl  186 (595)
                      ..|+..++.+|+.++..-...  ...  -.+.+|+..| .+.+..+|..||.+|..+..+..+....... .++|.|+.+
T Consensus       288 ~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL-~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~l  366 (510)
T 3ul1_B          288 LPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLL-TNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGV  366 (510)
T ss_dssp             HHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CT-TCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHH
T ss_pred             hhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHh-cCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHH
Confidence            999999999999997532110  011  1555666555 6788899999999999987654332222222 488999999


Q ss_pred             hccCchhHHHHHHHHHHHHHHhhcccCcCcH--HhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhH-----HhHHHHHH
Q 046417          187 VRIEGFKAKAAVLGVIGSVVRVGGARSKGVL--DWLVPCLVEFLCCDDWATRKAAAEVLGKVAVFDK-----DLATEYKR  259 (595)
Q Consensus       187 L~~~~~kaK~alLsAIgSlA~a~g~~~~~yl--~~lmp~L~e~L~~dDW~~RkaAaEaLgsIA~avg-----e~f~py~~  259 (595)
                      |.+..+.+|..+..+|+.++..+......|+  ..+++.|.++|.+.|..++..++++|..|.....     +.+..+..
T Consensus       367 L~~~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~ie  446 (510)
T 3ul1_B          367 LSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIE  446 (510)
T ss_dssp             HHSSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred             HcCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccchHHHHHHHH
Confidence            9999999998888899888764422211222  2468999999999999999999999999976542     22333333


Q ss_pred             --HHHHHHHhccCCchHHHHHHHHHHHHHh
Q 046417          260 --SCLAALETRRFDKVKIVRETMNRSLEMW  287 (595)
Q Consensus       260 --~~I~~Le~crfDKVK~VRda~~~aL~~~  287 (595)
                        ..+..++.+++.+-.-|++.+..-|+.+
T Consensus       447 e~ggl~~ie~Lq~~~n~~i~~~A~~iie~y  476 (510)
T 3ul1_B          447 ECGGLDKIEALQRHENESVYKASLNLIEKY  476 (510)
T ss_dssp             HTTHHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred             HcCcHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence              3477889999888888998877777665

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A

Probab=98.91  E-value=8.5e-09  Score=120.26  Aligned_cols=213  Identities=9%  Similarity=0.061  Sum_probs=154.8

Q ss_pred             hHHHHHHHHHHHHHhC-----CcC------cHHHH-HHhhhhcCCCC---ChHHHHHHHHHHHHHHHHccccchhhHHHH
Q 046417           35 TLPVATAELESIARTL-----TQD------SFSSF-LNCLQTTDSSS---KSPVRKQCVNLLTLLSRSHGDSLSPHLSKM   99 (595)
Q Consensus        35 T~r~A~~~LD~lA~~L-----~~~------~lp~f-L~~L~d~~ss~---kp~vRKaaI~lLG~lAEg~gd~I~PhLpkI   99 (595)
                      ....|+-.|-.++...     +..      .+..| ...+.....++   .|.+|..++..+|.+++-..   ..++..+
T Consensus       421 ~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~---~~~l~~~  497 (960)
T 1wa5_C          421 FKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLT---KAQLIEL  497 (960)
T ss_dssp             HHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSC---HHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhCC---HHHHHHH
Confidence            5567888888898653     111      44443 34443333333   78999999999999998642   3589999


Q ss_pred             HHHHHhhccCCChhHHHHHHHHHHHhhhhhc----------CCcchhccHHHHHHHhh--cCC----h--hHHHHHHHHH
Q 046417          100 ISTVSCRLRDPDSSVRSACVAATTAMSLNIT----------KPSFSVLSKPLIELILV--EQD----V--NSQVGGAMCL  161 (595)
Q Consensus       100 L~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~----------~~~~~~~l~PLi~aLl~--d~n----k--~VQ~~AA~cL  161 (595)
                      ++.+++.|.|+++.||.+||+|+..|++...          ...+..|+.+|+..|+.  +..    .  .....+..||
T Consensus       498 l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al  577 (960)
T 1wa5_C          498 MPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSI  577 (960)
T ss_dssp             HHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHH
T ss_pred             HHHHHHHhCCCChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHHHHHHH
Confidence            9999999999999999999999999997532          11122477888877753  121    1  1446788999


Q ss_pred             HHHHhcCCCchHHHHHHHHHHHHHhhcc----C-chhHHHHHHHHHHHHHHhh-cccCcCcHHhHHHHHHHhccCCCHHH
Q 046417          162 AAAIDAAPNPEVEQLRKLLPRLGKAVRI----E-GFKAKAAVLGVIGSVVRVG-GARSKGVLDWLVPCLVEFLCCDDWAT  235 (595)
Q Consensus       162 aaviE~a~d~~~~~L~~Ll~rL~klL~~----~-~~kaK~alLsAIgSlA~a~-g~~~~~yl~~lmp~L~e~L~~dDW~~  235 (595)
                      ..+++..++...||+..|+++|...+..    + ....+..++++|++++.+. ...+.+|.+.++|.+...|..+....
T Consensus       578 ~~vv~~~~~~~~p~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~~~~~p~~~~iL~~~~~~~  657 (960)
T 1wa5_C          578 FRVLQTSEDSIQPLFPQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLPLLVDSMMPTFLTVFSEDIQEF  657 (960)
T ss_dssp             HHHHHHHTTTTGGGHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHTTCTTT
T ss_pred             HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHhhhHhh
Confidence            9999998777889999999998887743    2 4445567889999999873 34466788899999999887654455


Q ss_pred             HHHHHHHHHHHHHHh
Q 046417          236 RKAAAEVLGKVAVFD  250 (595)
Q Consensus       236 RkaAaEaLgsIA~av  250 (595)
                      .-.+.+.++.++...
T Consensus       658 ~~~~~~i~~~l~~~~  672 (960)
T 1wa5_C          658 IPYVFQIIAFVVEQS  672 (960)
T ss_dssp             HHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHhc
Confidence            666778777776653

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B

Probab=98.90  E-value=2.6e-08  Score=108.67  Aligned_cols=252  Identities=13%  Similarity=0.096  Sum_probs=167.4

Q ss_pred             CCChHHHHHHHHHHHHHhC--------CcCcHHHHHHhhhhcCC-CCChHHHHHHHHHHHHHHHHccccc-hhhHHHHHH
Q 046417           32 DRDTLPVATAELESIARTL--------TQDSFSSFLNCLQTTDS-SSKSPVRKQCVNLLTLLSRSHGDSL-SPHLSKMIS  101 (595)
Q Consensus        32 DrDT~r~A~~~LD~lA~~L--------~~~~lp~fL~~L~d~~s-s~kp~vRKaaI~lLG~lAEg~gd~I-~PhLpkIL~  101 (595)
                      |.+.+..|+..|-.|+..=        ....+++++.+|..... .......+.+..+|..++.+..... ......++|
T Consensus       175 ~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp  254 (529)
T 3tpo_A          175 HAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILP  254 (529)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHH
Confidence            3346667777787777532        23448888888865432 2234567777778888777654322 445678999


Q ss_pred             HHHhhccCCChhHHHHHHHHHHHhhhhhcCC-cch---hccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCCCchHHHHH
Q 046417          102 TVSCRLRDPDSSVRSACVAATTAMSLNITKP-SFS---VLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNPEVEQLR  177 (595)
Q Consensus       102 ~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~~~-~~~---~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d~~~~~L~  177 (595)
                      .+++.|+++++.|+..+||+|+.++..-.+. ..+   ..+++|+..| .+.+..++..|+.||..++...+......+.
T Consensus       255 ~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL-~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~  333 (529)
T 3tpo_A          255 TLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLL-GATELPIVTPALRAIGNIVTGTDEQTQKVID  333 (529)
T ss_dssp             HHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHH-TCSCHHHHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred             HHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHh-cCCChhHHHHHHHHHHHHHccchHHHHHHhh
Confidence            9999999999999999999999998643110 111   2677788877 6788899999999999887543221112222


Q ss_pred             -HHHHHHHHhhccCchhHHHHHHHHHHHHHHhhcccCcCcH-HhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhH-Hh-
Q 046417          178 -KLLPRLGKAVRIEGFKAKAAVLGVIGSVVRVGGARSKGVL-DWLVPCLVEFLCCDDWATRKAAAEVLGKVAVFDK-DL-  253 (595)
Q Consensus       178 -~Ll~rL~klL~~~~~kaK~alLsAIgSlA~a~g~~~~~yl-~~lmp~L~e~L~~dDW~~RkaAaEaLgsIA~avg-e~-  253 (595)
                       ..++.|..+|+++...+|..+..+|+.++..........+ ..++|.|...|.+.++.+|+.|+-+|+.++.... +. 
T Consensus       334 ~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~~~~~~~  413 (529)
T 3tpo_A          334 AGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTSGGTVEQI  413 (529)
T ss_dssp             TTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred             cccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCHHHH
Confidence             3678899999999888888888888887742211111111 3478999999999999999999999999986432 22 


Q ss_pred             --HHHH--HHHHHHHHHhccCCchHHHHHHHHHHHHHhH
Q 046417          254 --ATEY--KRSCLAALETRRFDKVKIVRETMNRSLEMWK  288 (595)
Q Consensus       254 --f~py--~~~~I~~Le~crfDKVK~VRda~~~aL~~~K  288 (595)
                        +...  .+..+..|.    .+=.-|+..+.++|.-+-
T Consensus       414 ~~l~~~g~i~~L~~LL~----~~d~~i~~~~L~aL~nil  448 (529)
T 3tpo_A          414 VYLVHCGIIEPLMNLLS----AKDTKIIQVILDAISNIF  448 (529)
T ss_dssp             HHHHHTTCHHHHHHGGG----CSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHCcCHHHHHHHhc----CCCHHHHHHHHHHHHHHH
Confidence              1111  233444444    223445555566665443

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...

Probab=98.90  E-value=1.3e-08  Score=110.91  Aligned_cols=251  Identities=14%  Similarity=0.166  Sum_probs=165.3

Q ss_pred             CCChHHHHHHHHHHHHHh--CC-------cCcHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccchhhHH-HHHH
Q 046417           32 DRDTLPVATAELESIART--LT-------QDSFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPHLS-KMIS  101 (595)
Q Consensus        32 DrDT~r~A~~~LD~lA~~--L~-------~~~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~PhLp-kIL~  101 (595)
                      |.+.+..|+..+..|...  -|       ...+|+|+.+|..   ++++.++.++..+|+.||.+..+...--+. ..+|
T Consensus        70 d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~---~~~~~lq~~Aa~aL~nias~~~e~~~~vv~~GaIp  146 (510)
T 3ul1_B           70 NLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGK---TDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIP  146 (510)
T ss_dssp             CHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTC---TTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHH
T ss_pred             CHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCC---CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHH
Confidence            455677788888776432  11       2238888888864   345889999999999999876654322222 3688


Q ss_pred             HHHhhccCCChhHHHHHHHHHHHhhhhhcCC-cch---hccHHHHHHHhhcCC-----hhHHHHHHHHHHHHHhcC-CCc
Q 046417          102 TVSCRLRDPDSSVRSACVAATTAMSLNITKP-SFS---VLSKPLIELILVEQD-----VNSQVGGAMCLAAAIDAA-PNP  171 (595)
Q Consensus       102 ~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~~~-~~~---~~l~PLi~aLl~d~n-----k~VQ~~AA~cLaaviE~a-~d~  171 (595)
                      .+++.|++++..||..|+|+|+.|+.....- ..+   -.+.||+..| ...+     ..++..++.+|..++.+. +..
T Consensus       147 ~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL-~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~  225 (510)
T 3ul1_B          147 AFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALL-AVPDLSTLACGYLRNLTWTLSNLCRNKNPAP  225 (510)
T ss_dssp             HHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHT-CSSCGGGSCHHHHHHHHHHHHHHHCCCSSCC
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHH-HhccchhhhHHHHHHHHHHHHHHhhcccchh
Confidence            9999999999999999999999998643110 011   1677888877 3322     235567888888888764 333


Q ss_pred             hHHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHhhcccCc-CcHHhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHh
Q 046417          172 EVEQLRKLLPRLGKAVRIEGFKAKAAVLGVIGSVVRVGGARSK-GVLDWLVPCLVEFLCCDDWATRKAAAEVLGKVAVFD  250 (595)
Q Consensus       172 ~~~~L~~Ll~rL~klL~~~~~kaK~alLsAIgSlA~a~g~~~~-~yl~~lmp~L~e~L~~dDW~~RkaAaEaLgsIA~av  250 (595)
                      ....+..++|.|.++|+++...++..++.+++.++........ -.-..++|.|.++|.+.++.++..|+.+|+.|+...
T Consensus       226 ~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~  305 (510)
T 3ul1_B          226 PLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGT  305 (510)
T ss_dssp             CHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSC
T ss_pred             HHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcCC
Confidence            3567788999999999999988888877888777642211100 011246899999999999999999999999997533


Q ss_pred             HHhHHHH-HHHHHHHHHhccCCchHHHHHHHHHHHHH
Q 046417          251 KDLATEY-KRSCLAALETRRFDKVKIVRETMNRSLEM  286 (595)
Q Consensus       251 ge~f~py-~~~~I~~Le~crfDKVK~VRda~~~aL~~  286 (595)
                      .+..... ...++..|-..-.+.-..||..+..+|.-
T Consensus       306 ~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~n  342 (510)
T 3ul1_B          306 DEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSN  342 (510)
T ss_dssp             HHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHH
Confidence            2111100 11122222222234445666666665543

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A

Probab=98.88  E-value=1.5e-08  Score=95.58  Aligned_cols=189  Identities=13%  Similarity=0.129  Sum_probs=132.3

Q ss_pred             HHHHHHHhhccCCChhHHHHHHHHHHHhhhhhcCC--cch--hccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCCCchH
Q 046417           98 KMISTVSCRLRDPDSSVRSACVAATTAMSLNITKP--SFS--VLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNPEV  173 (595)
Q Consensus        98 kIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~~~--~~~--~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d~~~  173 (595)
                      ...+.+++.|+++++.||..++++|+.++..-.+.  ...  ..+++|+..| .+.+..++..|+.||..+....++...
T Consensus        12 ~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL-~~~~~~v~~~a~~~L~~l~~~~~~~~~   90 (210)
T 4db6_A           12 SELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLL-SSPNEQILQEALWALSNIASGGNEQIQ   90 (210)
T ss_dssp             -CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHT-TCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred             chhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHH-cCCCHHHHHHHHHHHHHHhcCCcHHHH
Confidence            34567888899999999999999999999532110  111  1567777777 677899999999999998854322111


Q ss_pred             HHHH-HHHHHHHHhhccCchhHHHHHHHHHHHHHHhhcccCcCc-HHhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhH
Q 046417          174 EQLR-KLLPRLGKAVRIEGFKAKAAVLGVIGSVVRVGGARSKGV-LDWLVPCLVEFLCCDDWATRKAAAEVLGKVAVFDK  251 (595)
Q Consensus       174 ~~L~-~Ll~rL~klL~~~~~kaK~alLsAIgSlA~a~g~~~~~y-l~~lmp~L~e~L~~dDW~~RkaAaEaLgsIA~avg  251 (595)
                      .++. ..++.|+.+|++++..++..++.+|+.++.......... -..++|.|.+++.+++..+|..|+.+|+.++....
T Consensus        91 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~  170 (210)
T 4db6_A           91 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN  170 (210)
T ss_dssp             HHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCH
T ss_pred             HHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCc
Confidence            2222 378999999999999999888889988874221110111 13478999999999999999999999999987532


Q ss_pred             HhHHHH-HHHHHHHHHhccCCchHHHHHHHHHHHHHh
Q 046417          252 DLATEY-KRSCLAALETRRFDKVKIVRETMNRSLEMW  287 (595)
Q Consensus       252 e~f~py-~~~~I~~Le~crfDKVK~VRda~~~aL~~~  287 (595)
                      +..... ...++..|...-.+.-..||+.+..+|..+
T Consensus       171 ~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l  207 (210)
T 4db6_A          171 EQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKL  207 (210)
T ss_dssp             HHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence            221111 123445555554567788999988888765

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B

Probab=98.87  E-value=1e-07  Score=105.72  Aligned_cols=207  Identities=14%  Similarity=0.131  Sum_probs=141.7

Q ss_pred             cCCCCChHHHHHHHHHHHHHHHHccccchhhHHHHHHHHHhhccCCChhHHHHHHHHHHHhhhhhcCCcchh-ccHHHHH
Q 046417           65 TDSSSKSPVRKQCVNLLTLLSRSHGDSLSPHLSKMISTVSCRLRDPDSSVRSACVAATTAMSLNITKPSFSV-LSKPLIE  143 (595)
Q Consensus        65 ~~ss~kp~vRKaaI~lLG~lAEg~gd~I~PhLpkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~~~~~~~-~l~PLi~  143 (595)
                      ..++++...||.+...++.+++..+|.+    .-++..+.+.|+|+++.||..|..+||.+..    +.... ++.++..
T Consensus        57 l~~s~~~~~Krl~yl~l~~~~~~~~e~~----~l~~n~l~kdL~~~n~~ir~~AL~~L~~i~~----~~~~~~l~~~l~~  128 (591)
T 2vgl_B           57 CMQTDNLELKKLVYLYLMNYAKSQPDMA----IMAVNSFVKDCEDPNPLIRALAVRTMGCIRV----DKITEYLCEPLRK  128 (591)
T ss_dssp             TTSSSCHHHHHHHHHHHHHHHHHSHHHH----HTTHHHHGGGSSSSSHHHHHHHHHHHHTCCS----GGGHHHHHHHHHH
T ss_pred             HhCCCCHHHHHHHHHHHHHHcccCchHH----HHHHHHHHHHcCCCCHHHHHHHHHHHHcCCh----HHHHHHHHHHHHH
Confidence            3456789999999999999999876642    3446788899999999999999999888763    11222 4444555


Q ss_pred             HHhhcCChhHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHhhccc-CcCcHHhHHH
Q 046417          144 LILVEQDVNSQVGGAMCLAAAIDAAPNPEVEQLRKLLPRLGKAVRIEGFKAKAAVLGVIGSVVRVGGAR-SKGVLDWLVP  222 (595)
Q Consensus       144 aLl~d~nk~VQ~~AA~cLaaviE~a~d~~~~~L~~Ll~rL~klL~~~~~kaK~alLsAIgSlA~a~g~~-~~~yl~~lmp  222 (595)
                      .| .+.+++|+..|+.||.++....++... . ..+++.|.++|++++..++.+++.+++.++...... ........++
T Consensus       129 ~L-~d~~~~VRk~A~~al~~i~~~~p~~~~-~-~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~  205 (591)
T 2vgl_B          129 CL-KDEDPYVRKTAAVCVAKLHDINAQMVE-D-QGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNIN  205 (591)
T ss_dssp             HS-SCSCHHHHHHHHHHHHHHHHSSCCCHH-H-HHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHH
T ss_pred             Hc-CCCChHHHHHHHHHHHHHHhhChhhcc-c-ccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccchhccHHHHH
Confidence            55 789999999999999999986655331 1 468999999999999999998888888776533221 2333445566


Q ss_pred             HHHHhccC-CCHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHh
Q 046417          223 CLVEFLCC-DDWATRKAAAEVLGKVAVFDKDLATEYKRSCLAALETRRFDKVKIVRETMNRSLEMW  287 (595)
Q Consensus       223 ~L~e~L~~-dDW~~RkaAaEaLgsIA~avge~f~py~~~~I~~Le~crfDKVK~VRda~~~aL~~~  287 (595)
                      .|...+.+ +.|. +...+++|+.++...    .+....+++.+..+-.+.-..||-.+..+|-.+
T Consensus       206 ~Ll~~l~~~~~~~-q~~il~~l~~l~~~~----~~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l  266 (591)
T 2vgl_B          206 KLLTALNECTEWG-QIFILDCLSNYNPKD----DREAQSICERVTPRLSHANSAVVLSAVKVLMKF  266 (591)
T ss_dssp             HHHHHHHHCCHHH-HHHHHHHHHTSCCCS----HHHHHHHHHHHTTCSCSSTTHHHHHHHHHHHHS
T ss_pred             HHHHcCCCCCchH-HHHHHHHHHHhCCCC----hHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence            66666654 5664 555566665543211    122345556666665666666766555555443

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*

Probab=98.84  E-value=3e-08  Score=101.96  Aligned_cols=216  Identities=13%  Similarity=0.060  Sum_probs=141.6

Q ss_pred             HHHHHHHHHHHHHHHHccccchhhHHHHHHHHHh-hccCCChhHHHHHHHHHHHhhhhhcC--Ccch--hccHHHHHHHh
Q 046417           72 PVRKQCVNLLTLLSRSHGDSLSPHLSKMISTVSC-RLRDPDSSVRSACVAATTAMSLNITK--PSFS--VLSKPLIELIL  146 (595)
Q Consensus        72 ~vRKaaI~lLG~lAEg~gd~I~PhLpkIL~~Ivr-rLkD~ds~VR~Ac~~aLg~LA~~l~~--~~~~--~~l~PLi~aLl  146 (595)
                      ..|..++..|..+++.......=+--..+|.++. .|+++++.||..|+|+||.++..-..  ....  -.++||+..|-
T Consensus        55 e~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~  134 (296)
T 1xqr_A           55 QEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLD  134 (296)
T ss_dssp             HHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHc
Confidence            4555666666666553321110011234677888 99999999999999999999964311  1111  27889998884


Q ss_pred             hcCChhHHHHHHHHHHHHHhcCCCchHHHHH-HHHHHHHHhhccCchhHHHHHHHHHHHHHHhhcccCcCcH--HhHHHH
Q 046417          147 VEQDVNSQVGGAMCLAAAIDAAPNPEVEQLR-KLLPRLGKAVRIEGFKAKAAVLGVIGSVVRVGGARSKGVL--DWLVPC  223 (595)
Q Consensus       147 ~d~nk~VQ~~AA~cLaaviE~a~d~~~~~L~-~Ll~rL~klL~~~~~kaK~alLsAIgSlA~a~g~~~~~yl--~~lmp~  223 (595)
                      .+.+..++..|+.||..++-+-++....++. ..++.|..+|+++..+++..+..+|+.++..... ...++  ..++|.
T Consensus       135 ~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~-~~~~vv~~g~i~~  213 (296)
T 1xqr_A          135 RDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPE-HKGTLCSMGMVQQ  213 (296)
T ss_dssp             HCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGG-GHHHHHHTTHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChH-HHHHHHHcCCHHH
Confidence            4567889999999999998653322222332 4788999999999999998888899888754221 12222  347899


Q ss_pred             HHHhccCCCHHHHHHHHHHHHHHHHHhHHh----------HHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHhHhcCCC
Q 046417          224 LVEFLCCDDWATRKAAAEVLGKVAVFDKDL----------ATEYKRSCLAALETRRFDKVKIVRETMNRSLEMWKEVPGV  293 (595)
Q Consensus       224 L~e~L~~dDW~~RkaAaEaLgsIA~avge~----------f~py~~~~I~~Le~crfDKVK~VRda~~~aL~~~K~i~~~  293 (595)
                      |.+.|.+++..+|..|+.+|+.|+......          +..+...+++.|..  .+   --++....+..+|....+.
T Consensus       214 Lv~LL~~~d~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~l~~lL~~~~~~lq~--~e---~~~e~~~~~~~il~~~f~~  288 (296)
T 1xqr_A          214 LVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQLLQQ--HE---EYQEELEFCEKLLQTCFSS  288 (296)
T ss_dssp             HHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHHCGGGCHHHHHHHHHHHHTT--CG---GGHHHHHHHHHHHHHHCC-
T ss_pred             HHHHHcCCChhHHHHHHHHHHHHHhCChhHHHHHhccHHHHHHHHHHHHHHccc--hH---HHHHHHHHHHHHHHHHcCC
Confidence            999999999999999999999998753221          22233333222221  11   1255566677777777754

>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}

Probab=98.83  E-value=1e-07  Score=110.72  Aligned_cols=227  Identities=8%  Similarity=0.052  Sum_probs=155.5

Q ss_pred             hHHHHHHHHHHHHHhCCc---CcHHHHHHhhhhcCC-CCChHHHHHHHHHHHHHHHHccccchhhHHHHHHHHHhhccCC
Q 046417           35 TLPVATAELESIARTLTQ---DSFSSFLNCLQTTDS-SSKSPVRKQCVNLLTLLSRSHGDSLSPHLSKMISTVSCRLRDP  110 (595)
Q Consensus        35 T~r~A~~~LD~lA~~L~~---~~lp~fL~~L~d~~s-s~kp~vRKaaI~lLG~lAEg~gd~I~PhLpkIL~~IvrrLkD~  110 (595)
                      ....|+-.|-.++..+..   ..++.+++.|.+... +..+.+|..++.++|.+++-..+.- .||+.++++|++.| | 
T Consensus       480 ~~eaal~~l~~iae~~~~~~~~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~-~~l~~vl~~l~~~l-~-  556 (971)
T 2x1g_F          480 KLEACIYSFQSVAEHFGGEEKRQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENP-AYIPPAINLLVRGL-N-  556 (971)
T ss_dssp             HHHHHHHHHHHTTTC------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC-----CHHHHHHHHHHHH-H-
T ss_pred             HHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCH-HHHHHHHHHHHHHh-C-
Confidence            566677778888877653   337778876655332 2478999999999999998876433 78999999999999 5 


Q ss_pred             ChhHHHHHHHHHHHhhhhhcCCcchhccHHHHHHHh---hc--CChhHHHHHHHHHHHHHhcCC-CchHHHHHHHHHHHH
Q 046417          111 DSSVRSACVAATTAMSLNITKPSFSVLSKPLIELIL---VE--QDVNSQVGGAMCLAAAIDAAP-NPEVEQLRKLLPRLG  184 (595)
Q Consensus       111 ds~VR~Ac~~aLg~LA~~l~~~~~~~~l~PLi~aLl---~d--~nk~VQ~~AA~cLaaviE~a~-d~~~~~L~~Ll~rL~  184 (595)
                       +.|+.+||.++..|++.+.. ....|+.+|+..|+   ..  -+...+..+..|+..++...+ +...+|+..+++.+.
T Consensus       557 -~~v~~~A~~al~~l~~~~~~-~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~~~~~ll~~l~  634 (971)
T 2x1g_F          557 -SSMSAQATLGLKELCRDCQL-QLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPKYLDIIVSPCF  634 (971)
T ss_dssp             -SSCHHHHHHHHHHHHHHCHH-HHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHH
T ss_pred             -hHHHHHHHHHHHHHHHHHHH-hccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence             78999999999999987631 22236777776653   23  346688888888888888754 444567776665555


Q ss_pred             Hhh----ccCc--hhHH---HHHHHHHHHHHHhhcc-------------cCcCcHHhHHHHHHHhccC--CCHHHHHHHH
Q 046417          185 KAV----RIEG--FKAK---AAVLGVIGSVVRVGGA-------------RSKGVLDWLVPCLVEFLCC--DDWATRKAAA  240 (595)
Q Consensus       185 klL----~~~~--~kaK---~alLsAIgSlA~a~g~-------------~~~~yl~~lmp~L~e~L~~--dDW~~RkaAa  240 (595)
                      ..+    +.+.  -..+   ...++.|++++.+-+.             .+.+|++.+||.+...+..  ++-.+...++
T Consensus       635 ~~l~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~e~~~  714 (971)
T 2x1g_F          635 EELQAICQADSKTPAARIRTIFRLNMISTLFSSLNTDVDEQATDQPIVQPVLLVMQRTMPIFKRIAEMWVEEIDVLEAAC  714 (971)
T ss_dssp             HHHHHHHTC---CHHHHHHHHHHHHHHHHHHHHHTC-------------CCHHHHHTTHHHHHHHHHHTTTCHHHHHHHH
T ss_pred             HHHHHHHhcCCCChhhHHHHHHHHHHHHHHHhhcCCCcCcccccccCCCchHHHHHHHHHHHHHHHHhccccHHHHHHHH
Confidence            444    3321  1122   2344556666553221             3457788899998888753  3568899999


Q ss_pred             HHHHHHHHHhHHhHHHHHHHHHHHHH
Q 046417          241 EVLGKVAVFDKDLATEYKRSCLAALE  266 (595)
Q Consensus       241 EaLgsIA~avge~f~py~~~~I~~Le  266 (595)
                      .+++.++..+|+.|.||.+.+++.|-
T Consensus       715 ~~~~~~~~~~~~~~~p~l~~~~~~l~  740 (971)
T 2x1g_F          715 SAMKHAITNLRSSFQPMLQDLCLFIV  740 (971)
T ss_dssp             HHHHHHHHHHHC--CTHHHHHHHHHH
T ss_pred             HHHHHHHHhhhhhccccHHHHHHHHH
Confidence            99999999999888999988887754

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B

Probab=98.82  E-value=2.6e-07  Score=106.82  Aligned_cols=225  Identities=12%  Similarity=0.088  Sum_probs=162.4

Q ss_pred             hHHHHHHHHHHHHHhCCc---CcHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccchhhHHHHHHHHHhhccCCC
Q 046417           35 TLPVATAELESIARTLTQ---DSFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPHLSKMISTVSCRLRDPD  111 (595)
Q Consensus        35 T~r~A~~~LD~lA~~L~~---~~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~PhLpkIL~~IvrrLkD~d  111 (595)
                      ....|+-.|-.++..+..   +.++.+++.|.. ..++.+.+|..++.++|..++-..+. ..||+.+++.|+..|+|  
T Consensus       465 ~~eaal~al~~i~~~~~~~~~~~l~~l~~~l~~-l~~~~~~vr~~~~~~l~~~~~~l~~~-~~~l~~vl~~l~~~l~~--  540 (963)
T 2x19_B          465 HTEALLYGFQSIAETIDVNYSDVVPGLIGLIPR-ISISNVQLADTVMFTIGALSEWLADH-PVMINSVLPLVLHALGN--  540 (963)
T ss_dssp             HHHHHHHHHHHHTTSCCSSCCSHHHHHHHHGGG-SCCCSHHHHHHHHHHHHHTHHHHHHC-HHHHTTTHHHHHHHTTC--
T ss_pred             HHHHHHHHHHHHHhhcCchhhHHHHHHHHHHHh-CCCCcHHHHHHHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHhCC--
Confidence            456688888888888763   237788887665 33457899999999999999876543 26899999999999977  


Q ss_pred             hhHHHHHHHHHHHhhhhhcCCcchhccHHHHHHHh---hc--CChhHHHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHH
Q 046417          112 SSVRSACVAATTAMSLNITKPSFSVLSKPLIELIL---VE--QDVNSQVGGAMCLAAAIDAAP-NPEVEQLRKLLPRLGK  185 (595)
Q Consensus       112 s~VR~Ac~~aLg~LA~~l~~~~~~~~l~PLi~aLl---~d--~nk~VQ~~AA~cLaaviE~a~-d~~~~~L~~Ll~rL~k  185 (595)
                      +.|+.+||.++..|++.+.+ .+..++.+++..|.   ..  -+...+....-|+..++...+ +...+|+..+|+.+..
T Consensus       541 ~~V~~~A~~al~~l~~~~~~-~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~~~~~~l~~~l~~  619 (963)
T 2x19_B          541 PELSVSSVSTLKKICRECKY-DLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEILKNLHSLISPYIQ  619 (963)
T ss_dssp             GGGHHHHHHHHHHHHHHTGG-GCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHH-HHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence            78999999999999987632 23346777766653   22  245678888888899887765 4446788888877766


Q ss_pred             hhc----cC-ch---hHHHHHHHHHHHHHHhhccc----------------------CcCcHHhHHHHHHHhcc--CCCH
Q 046417          186 AVR----IE-GF---KAKAAVLGVIGSVVRVGGAR----------------------SKGVLDWLVPCLVEFLC--CDDW  233 (595)
Q Consensus       186 lL~----~~-~~---kaK~alLsAIgSlA~a~g~~----------------------~~~yl~~lmp~L~e~L~--~dDW  233 (595)
                      .++    .+ +-   +....++++|++++.+.+..                      ..++++.++|.+...+.  .++-
T Consensus       620 ~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  699 (963)
T 2x19_B          620 QLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVVVLQQVFQLIQKVLSKWLNDA  699 (963)
T ss_dssp             HHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCCSSCCC---------------CCCHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccccCCCCCCCCchHHHHHHHHHHHHHHHHhccCch
Confidence            653    22 22   22345668888888754321                      23367778888777764  2455


Q ss_pred             HHHHHHHHHHHHHHHHhHHhHHHHHHHHHHH
Q 046417          234 ATRKAAAEVLGKVAVFDKDLATEYKRSCLAA  264 (595)
Q Consensus       234 ~~RkaAaEaLgsIA~avge~f~py~~~~I~~  264 (595)
                      .++..++.+++.++..+|+.|.||.+.++..
T Consensus       700 ~v~e~~~~~l~~~~~~~~~~~~~~l~~~~~~  730 (963)
T 2x19_B          700 QVVEAVCAIFEKSVKTLLDDFAPMVPQLCEM  730 (963)
T ss_dssp             HHHHHHHHHHHHHHHHSSSTTGGGHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhcccccccHHHHHHH
Confidence            8899999999999999998777887766555

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*

Probab=98.81  E-value=1.3e-07  Score=97.24  Aligned_cols=184  Identities=17%  Similarity=0.163  Sum_probs=133.5

Q ss_pred             hHHHHHHHHHhhhc-----------CCCChHHHHHHHHHHHHHhCC-------cCcHHHHHH-hhhhcCCCCChHHHHHH
Q 046417           17 NDLKQRVITCLNKL-----------ADRDTLPVATAELESIARTLT-------QDSFSSFLN-CLQTTDSSSKSPVRKQC   77 (595)
Q Consensus        17 ~~lk~rvl~~L~KL-----------~DrDT~r~A~~~LD~lA~~L~-------~~~lp~fL~-~L~d~~ss~kp~vRKaa   77 (595)
                      .++.+.+++.|.--           ++.+....|+..|..++.+++       ...+++|+. +|.    ++++.+|+.+
T Consensus        27 ~~~mk~~l~vl~~~~~~~~~~~~~~~~~e~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~----s~~~~vr~~A  102 (296)
T 1xqr_A           27 VEQMKSCLRVLSQPMPPTAGEAEQAADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLE----AGAAGLRWRA  102 (296)
T ss_dssp             HHHHHHHHHHHHSCCCSSCCHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTT----CSSHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCcccccccccCCCHHHHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHc----CCCHHHHHHH
Confidence            45566667766542           111345568888887776544       233788888 664    4678999999


Q ss_pred             HHHHHHHHHHcc---ccchhhHHHHHHHHHhhcc-CCChhHHHHHHHHHHHhhhhhcC--Ccch--hccHHHHHHHhhcC
Q 046417           78 VNLLTLLSRSHG---DSLSPHLSKMISTVSCRLR-DPDSSVRSACVAATTAMSLNITK--PSFS--VLSKPLIELILVEQ  149 (595)
Q Consensus        78 I~lLG~lAEg~g---d~I~PhLpkIL~~IvrrLk-D~ds~VR~Ac~~aLg~LA~~l~~--~~~~--~~l~PLi~aLl~d~  149 (595)
                      +.+||.++...+   +.+..+  ..++.+++.|+ +++..||..|+|||+.|+.....  +.+.  -.+++|+..| .+.
T Consensus       103 a~~Lg~ia~~n~~~~~~vv~~--g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL-~~~  179 (296)
T 1xqr_A          103 AQLIGTCSQNVAAIQEQVLGL--GALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAM-QQQ  179 (296)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHT--THHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHH-HSS
T ss_pred             HHHHHHHHhCCHHHHHHHHHC--CCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHH-cCC
Confidence            999999997643   333322  46777777887 56889999999999999864321  1111  2677888877 678


Q ss_pred             ChhHHHHHHHHHHHHHhcCCCchHHHHH--HHHHHHHHhhccCchhHHHHHHHHHHHHHHh
Q 046417          150 DVNSQVGGAMCLAAAIDAAPNPEVEQLR--KLLPRLGKAVRIEGFKAKAAVLGVIGSVVRV  208 (595)
Q Consensus       150 nk~VQ~~AA~cLaaviE~a~d~~~~~L~--~Ll~rL~klL~~~~~kaK~alLsAIgSlA~a  208 (595)
                      +..+|..||.||..++.+.++. ..++-  .+++.|+.+|+++...++..++.+|+.++..
T Consensus       180 d~~v~~~A~~aLs~L~~~~~~~-~~~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~  239 (296)
T 1xqr_A          180 VQKLKVKSAFLLQNLLVGHPEH-KGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTD  239 (296)
T ss_dssp             CHHHHHHHHHHHHHHHHHCGGG-HHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTT
T ss_pred             CHHHHHHHHHHHHHHHhCChHH-HHHHHHcCCHHHHHHHHcCCChhHHHHHHHHHHHHHhC
Confidence            9999999999999998873332 33343  3889999999999999999999999999864

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}

Probab=98.71  E-value=1.7e-06  Score=83.96  Aligned_cols=214  Identities=17%  Similarity=0.212  Sum_probs=155.8

Q ss_pred             HHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccchhhHHHHHHHHHhhccCCChhHHHHHHHHHHHhhhhhcCCcchh
Q 046417           57 SFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPHLSKMISTVSCRLRDPDSSVRSACVAATTAMSLNITKPSFSV  136 (595)
Q Consensus        57 ~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~PhLpkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~~~~~~~  136 (595)
                      .||..+..+..++-|-++|.++..+.++++..++.+.|.+.+++..+-+   +..--.-++...++|.+|..-   |  .
T Consensus        32 ~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~epl~~kL~vm~~k---sEaIpltqeIa~a~G~la~i~---P--e  103 (253)
T 2db0_A           32 SVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPMLKKLFSLLKK---SEAIPLTQEIAKAFGQMAKEK---P--E  103 (253)
T ss_dssp             HHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH---CCSHHHHHHHHHHHHHHHHHC---H--H
T ss_pred             HHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHhh---cccCchHHHHHHHHhHHHHhC---H--H
Confidence            3555555566667799999999999999999999999999998875432   223335567778999999744   2  2


Q ss_pred             ccHHHHHHHhh---cCChhHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHhhcccC
Q 046417          137 LSKPLIELILV---EQDVNSQVGGAMCLAAAIDAAPNPEVEQLRKLLPRLGKAVRIEGFKAKAAVLGVIGSVVRVGGARS  213 (595)
Q Consensus       137 ~l~PLi~aLl~---d~nk~VQ~~AA~cLaaviE~a~d~~~~~L~~Ll~rL~klL~~~~~kaK~alLsAIgSlA~a~g~~~  213 (595)
                      .+.|++..|+.   -.++...+..+|+|..+.-+-+    ..+..+..-|+.+|.+++..-|.+++.-|+    +.|...
T Consensus       104 ~v~~vVp~lfanyrigd~kikIn~~yaLeeIaranP----~l~~~v~rdi~smltskd~~Dkl~aLnFi~----alGen~  175 (253)
T 2db0_A          104 LVKSMIPVLFANYRIGDEKTKINVSYALEEIAKANP----MLMASIVRDFMSMLSSKNREDKLTALNFIE----AMGENS  175 (253)
T ss_dssp             HHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCH----HHHHHHHHHHHHHTSCSSHHHHHHHHHHHH----TCCTTT
T ss_pred             HHHhhHHHHHHHHhcCCccceecHHHHHHHHHHhCh----HHHHHHHHHHHHHhcCCChHHHHHHHHHHH----HHhccC
Confidence            56777777764   3588889999998877654332    356677788888999998888887777666    345666


Q ss_pred             cCcHHhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHhHhcC
Q 046417          214 KGVLDWLVPCLVEFLCCDDWATRKAAAEVLGKVAVFDKDLATEYKRSCLAALETRRFDKVKIVRETMNRSLEMWKEVP  291 (595)
Q Consensus       214 ~~yl~~lmp~L~e~L~~dDW~~RkaAaEaLgsIA~avge~f~py~~~~I~~Le~crfDKVK~VRda~~~aL~~~K~i~  291 (595)
                      ..|+...+|.|...|.|.|--+|.+|.|+|+.+|..-.. +.+-.-   ..|++. -|.=-.|-..+.++|..+--+-
T Consensus       176 ~~yv~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~npk-lRkii~---~kl~e~-~D~S~lv~~~V~egL~rl~l~e  248 (253)
T 2db0_A          176 FKYVNPFLPRIINLLHDGDEIVRASAVEALVHLATLNDK-LRKVVI---KRLEEL-NDTSSLVNKTVKEGISRLLLLE  248 (253)
T ss_dssp             HHHHGGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHH-HHHHHH---HHHHHC-CCSCHHHHHHHHHHHHHHHHC-
T ss_pred             ccccCcchHHHHHHHcCcchhhhHHHHHHHHHHHHcCHH-HHHHHH---HHHHHh-cCcHHHHHHHHHHHHHHHHHHh
Confidence            788889999999999999999999999999999985433 444333   344432 1444666666666666655443

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}

Probab=98.66  E-value=1.4e-06  Score=97.02  Aligned_cols=246  Identities=10%  Similarity=0.054  Sum_probs=168.0

Q ss_pred             CCChHHHHHHHHHHHHHhC-------CcCcHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccchhhH-HHHHHHH
Q 046417           32 DRDTLPVATAELESIARTL-------TQDSFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPHL-SKMISTV  103 (595)
Q Consensus        32 DrDT~r~A~~~LD~lA~~L-------~~~~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~PhL-pkIL~~I  103 (595)
                      |.+.++.|+..|..|+..-       ....++.|+.+|.+    +++.+|+.++.+|+.++....+...... ..+++.+
T Consensus        70 ~~~~~~~A~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~----~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~L  145 (644)
T 2z6h_A           70 DVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGS----PVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKM  145 (644)
T ss_dssp             CHHHHHHHHHHHHHHTTSHHHHHHHHTTTHHHHHHHHTTC----SSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHH
T ss_pred             CHHHHHHHHHHHHHHhcChhhHHHHHHcCCHHHHHHHHhC----CCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHH
Confidence            4446677777777766431       22346777766653    4689999999999999987643332222 4678999


Q ss_pred             HhhccCCChhHHHHHHHHHHHhhhhhcC--Ccch--hccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCCCchHHHH-H-
Q 046417          104 SCRLRDPDSSVRSACVAATTAMSLNITK--PSFS--VLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNPEVEQL-R-  177 (595)
Q Consensus       104 vrrLkD~ds~VR~Ac~~aLg~LA~~l~~--~~~~--~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d~~~~~L-~-  177 (595)
                      ++.|+++++.++.+++.+|..|+..-.+  ....  -.+.+|+..|-......++..++.+|..+....  ....++ . 
T Consensus       146 v~lL~~~~~~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~--~~~~~l~~~  223 (644)
T 2z6h_A          146 VALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCS--SNKPAIVEA  223 (644)
T ss_dssp             HHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCT--THHHHHHHT
T ss_pred             HHHHCcCCHHHHHHHHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcCc--ccHHHHHHC
Confidence            9999999999999999999988852110  0011  157788888743444567778888888877532  222333 2 


Q ss_pred             HHHHHHHHhhccCchhHHHHHHHHHHHHHHhhcccCcCcHHhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhH---HhH
Q 046417          178 KLLPRLGKAVRIEGFKAKAAVLGVIGSVVRVGGARSKGVLDWLVPCLVEFLCCDDWATRKAAAEVLGKVAVFDK---DLA  254 (595)
Q Consensus       178 ~Ll~rL~klL~~~~~kaK~alLsAIgSlA~a~g~~~~~yl~~lmp~L~e~L~~dDW~~RkaAaEaLgsIA~avg---e~f  254 (595)
                      ..++.|++++++.+..++..++.+++.++.....  ......++|.|...+.++++.+|..|+.+|+.|+..-.   ..+
T Consensus       224 g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~--~~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v  301 (644)
T 2z6h_A          224 GGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATK--QEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMV  301 (644)
T ss_dssp             THHHHHHTTTTCSCHHHHHHHHHHHHHHGGGCTT--CCSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             CCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcchh--hhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence            3789999999988888888888888887654322  23456789999999999999999999999999976321   222


Q ss_pred             HH--HHHHHHHHHHhccCCchHHHHHHHHHHHHHh
Q 046417          255 TE--YKRSCLAALETRRFDKVKIVRETMNRSLEMW  287 (595)
Q Consensus       255 ~p--y~~~~I~~Le~crfDKVK~VRda~~~aL~~~  287 (595)
                      ..  -.+.++..|...  +....||..+..+|.-+
T Consensus       302 ~~~g~v~~Lv~lL~~~--~~~~~v~~~a~~aL~nL  334 (644)
T 2z6h_A          302 CQVGGIEALVRTVLRA--GDREDITEPAICALRHL  334 (644)
T ss_dssp             HHTTHHHHHHHHHHHH--TTCHHHHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHcc--CCcHHHHHHHHHHHHHH
Confidence            21  135566666643  11246777777777665

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}

Probab=98.64  E-value=1.5e-06  Score=99.70  Aligned_cols=247  Identities=10%  Similarity=0.057  Sum_probs=166.3

Q ss_pred             CCChHHHHHHHHHHHHHhC-------CcCcHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccchhhH-HHHHHHH
Q 046417           32 DRDTLPVATAELESIARTL-------TQDSFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPHL-SKMISTV  103 (595)
Q Consensus        32 DrDT~r~A~~~LD~lA~~L-------~~~~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~PhL-pkIL~~I  103 (595)
                      |.+.++.|+..|..|+..-       ....++.++..|.+    .++.+|+.++.+|+.|+....+...... ..+++.+
T Consensus       206 d~~vr~~Aa~aL~~Ls~~~~~~~~i~~~g~I~~Lv~lL~~----~~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~L  281 (780)
T 2z6g_A          206 DVETARCTSGTLHNLSHHREGLLAIFKSGGIPALVNMLGS----PVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKM  281 (780)
T ss_dssp             CHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHTTC----SCHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHH
T ss_pred             CHHHHHHHHHHHHHHhCCchhHHHHHHcCCHHHHHHHHcC----CCHHHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHH
Confidence            4557888888888876531       12336666666653    4689999999999999988765433332 4688899


Q ss_pred             HhhccCCChhHHHHHHHHHHHhhhhhcC--Ccch--hccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCCCchHHHHH-H
Q 046417          104 SCRLRDPDSSVRSACVAATTAMSLNITK--PSFS--VLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNPEVEQLR-K  178 (595)
Q Consensus       104 vrrLkD~ds~VR~Ac~~aLg~LA~~l~~--~~~~--~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d~~~~~L~-~  178 (595)
                      ++.|++++..|+..++.+|..++....+  ..+.  ..+.+|+..|-.......+..++.+|..+.... ..-...+. .
T Consensus       282 v~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~-~~~~~i~~~g  360 (780)
T 2z6g_A          282 VALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCS-SNKPAIVEAG  360 (780)
T ss_dssp             HHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTST-THHHHHHHTT
T ss_pred             HHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcCh-HHHHHHHHhc
Confidence            9999999999999999999888742100  0001  256778887743444556777788788777532 21112222 3


Q ss_pred             HHHHHHHhhccCchhHHHHHHHHHHHHHHhhcccCcCcHHhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhH---HhHH
Q 046417          179 LLPRLGKAVRIEGFKAKAAVLGVIGSVVRVGGARSKGVLDWLVPCLVEFLCCDDWATRKAAAEVLGKVAVFDK---DLAT  255 (595)
Q Consensus       179 Ll~rL~klL~~~~~kaK~alLsAIgSlA~a~g~~~~~yl~~lmp~L~e~L~~dDW~~RkaAaEaLgsIA~avg---e~f~  255 (595)
                      +++.|+.+|.+....++..++.+++.++.....  ......++|.|.+.|.+++|.+|..|+.+|+.|+..-.   ..+.
T Consensus       361 ~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~--~~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~  438 (780)
T 2z6g_A          361 GMQALGLHLTDPSQRLVQNCLWTLRNLSDAATK--QEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVC  438 (780)
T ss_dssp             HHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTT--CSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHH
T ss_pred             hHHHHHHHHcCCchHHHHHHHHHHHHHhccchh--hhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence            778999999888777777777777777653322  22347799999999999999999999999999976321   1111


Q ss_pred             --HHHHHHHHHHHhccCCchHHHHHHHHHHHHHh
Q 046417          256 --EYKRSCLAALETRRFDKVKIVRETMNRSLEMW  287 (595)
Q Consensus       256 --py~~~~I~~Le~crfDKVK~VRda~~~aL~~~  287 (595)
                        .-.+.++..|...  +....||..+..+|.-+
T Consensus       439 ~~g~i~~Lv~lL~~~--~~~~~v~~~Al~aL~nL  470 (780)
T 2z6g_A          439 QVGGIEALVRTVLRA--GDREDITEPAICALRHL  470 (780)
T ss_dssp             TTTHHHHHHHHHHHH--TTCHHHHHHHHHHHHHT
T ss_pred             HCCCHHHHHHHHHcc--CCHHHHHHHHHHHHHHH
Confidence              1235566666642  11236777777777654

>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}

Probab=98.63  E-value=6.8e-07  Score=89.58  Aligned_cols=188  Identities=11%  Similarity=0.050  Sum_probs=133.5

Q ss_pred             hhhcCCCCChHHHHHHHHHHHHHHHHcc-----ccchhhHHHHHHHHHhhccCCChhHHHHHHHHHHHhhhhhcCCc---
Q 046417           62 LQTTDSSSKSPVRKQCVNLLTLLSRSHG-----DSLSPHLSKMISTVSCRLRDPDSSVRSACVAATTAMSLNITKPS---  133 (595)
Q Consensus        62 L~d~~ss~kp~vRKaaI~lLG~lAEg~g-----d~I~PhLpkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~~~~---  133 (595)
                      |.+...+-+|..|++++..|..+.+...     +...+.+..+++.+.+.+.|++..|...++.++..|+..+....   
T Consensus        14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~   93 (278)
T 4ffb_C           14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKN   93 (278)
T ss_dssp             HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCH
T ss_pred             HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhccc
Confidence            3455667789999999999887776654     33333455667788889999999999999999999987654211   


Q ss_pred             --ch----hccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHH
Q 046417          134 --FS----VLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNPEVEQLRKLLPRLGKAVRIEGFKAKAAVLGVIGSVVR  207 (595)
Q Consensus       134 --~~----~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d~~~~~L~~Ll~rL~klL~~~~~kaK~alLsAIgSlA~  207 (595)
                        ..    .+++.|++-.+++..+.+...|..||..+++....     ...+++.+...+++.+.+++...+..|..+..
T Consensus        94 ~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~-----~~~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~  168 (278)
T 4ffb_C           94 AHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTS-----ITQSVELVIPFFEKKLPKLIAAAANCVYELMA  168 (278)
T ss_dssp             HHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSS-----SHHHHHHHGGGGGCSCHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCc-----HHHHHHHHHHHHhccCHHHHHHHHHHHHHHHH
Confidence              11    14455555533667777777777888888876432     23455666778999999999999999888876


Q ss_pred             hhccc---CcCcHHhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhHHhH
Q 046417          208 VGGAR---SKGVLDWLVPCLVEFLCCDDWATRKAAAEVLGKVAVFDKDLA  254 (595)
Q Consensus       208 a~g~~---~~~yl~~lmp~L~e~L~~dDW~~RkaAaEaLgsIA~avge~f  254 (595)
                      .-|..   ..+.++.+++.|..++.+.|=.+|.+|+++++.|-..+|+.+
T Consensus       169 ~fg~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~~G~~~  218 (278)
T 4ffb_C          169 AFGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKVTGNNS  218 (278)
T ss_dssp             HHTTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC-----
T ss_pred             HhCCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCcch
Confidence            43322   134567788888889999999999999999999988888543

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}

Probab=98.62  E-value=2.5e-07  Score=106.23  Aligned_cols=261  Identities=13%  Similarity=0.058  Sum_probs=163.1

Q ss_pred             HHHhhhc-CCCC--hHHHHHHHHHHHHHhCCcC-cHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccchhhH-HH
Q 046417           24 ITCLNKL-ADRD--TLPVATAELESIARTLTQD-SFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPHL-SK   98 (595)
Q Consensus        24 l~~L~KL-~DrD--T~r~A~~~LD~lA~~L~~~-~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~PhL-pk   98 (595)
                      +..|.++ .+.+  ..+.|+..|-.|+...+.. .+..+++.|.....+.++.+|+.++.+|+.|+.+..+.....+ ..
T Consensus       362 l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g  441 (780)
T 2z6g_A          362 MQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVG  441 (780)
T ss_dssp             HHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTT
T ss_pred             HHHHHHHHcCCchHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCC
Confidence            4445544 3333  5667788888888765422 2444555555555567899999999999999886543221111 24


Q ss_pred             HHHHHHhhccCC-Ch-hHHHHHHHHHHHhhhhhcCC-----cch--hccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCC
Q 046417           99 MISTVSCRLRDP-DS-SVRSACVAATTAMSLNITKP-----SFS--VLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAP  169 (595)
Q Consensus        99 IL~~IvrrLkD~-ds-~VR~Ac~~aLg~LA~~l~~~-----~~~--~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~  169 (595)
                      .++.+++.|.++ +. .||..|+++|+.|+....+.     ...  ..+++|+..|.......++..||.+|..+.....
T Consensus       442 ~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~  521 (780)
T 2z6g_A          442 GIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPA  521 (780)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHHSSHH
T ss_pred             CHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHHHhcCHH
Confidence            577788888763 43 89999999999998532210     001  2577788777433345899999999999875311


Q ss_pred             CchHHHHH-HHHHHHHHhhccCchh----------------------HHHHHHHHHHHHHHhhcccCcCcH--HhHHHHH
Q 046417          170 NPEVEQLR-KLLPRLGKAVRIEGFK----------------------AKAAVLGVIGSVVRVGGARSKGVL--DWLVPCL  224 (595)
Q Consensus       170 d~~~~~L~-~Ll~rL~klL~~~~~k----------------------aK~alLsAIgSlA~a~g~~~~~yl--~~lmp~L  224 (595)
                      .. ..++. .+++.|+.+|.+..+.                      ++.+++.+++.++.....  ...+  ..++|.|
T Consensus       522 ~~-~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~al~nq~~~~~~~~~~v~~~a~~aL~~La~~~~~--~~~l~~~~~i~~L  598 (780)
T 2z6g_A          522 NH-APLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARDIHN--RIVIRGLNTIPLF  598 (780)
T ss_dssp             HH-HHHHHTTHHHHHHHHHHHHHHHHHHTTC------CCSTTCCHHHHHHHHHHHHHHHTTSHHH--HHHHHHTCCHHHH
T ss_pred             HH-HHHHHCCCHHHHHHHHHhcchhHHHHHhhccccchhhcccChHHHHHHHHHHHHHHhcChhh--HHHHHHCCcHHHH
Confidence            10 11222 3677777777654332                      344555666665421100  0111  2368999


Q ss_pred             HHhccCCCHHHHHHHHHHHHHHHHHh--HHhHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHhHh
Q 046417          225 VEFLCCDDWATRKAAAEVLGKVAVFD--KDLATEYKRSCLAALETRRFDKVKIVRETMNRSLEMWKE  289 (595)
Q Consensus       225 ~e~L~~dDW~~RkaAaEaLgsIA~av--ge~f~py~~~~I~~Le~crfDKVK~VRda~~~aL~~~K~  289 (595)
                      .++|.+.+..+|..|+.+|+.++..-  ...|..  ..++..|.....|+-..||..+..||..+-.
T Consensus       599 v~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~i~~--~g~i~~L~~Ll~~~~~~Vr~~A~~aL~~l~~  663 (780)
T 2z6g_A          599 VQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEA--EGATAPLTELLHSRNEGVATYAAAVLFRMSE  663 (780)
T ss_dssp             HHGGGCSCHHHHHHHHHHHHHHHTSHHHHHHHHH--TTCHHHHHHGGGCSCHHHHHHHHHHHHHHHT
T ss_pred             HHHHcCCCHHHHHHHHHHHHHHhcCHHHHHHHHH--CCCHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence            99999999999999999999987321  111211  1245566666667788888888888876654

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A

Probab=98.62  E-value=3.3e-06  Score=89.89  Aligned_cols=246  Identities=11%  Similarity=0.071  Sum_probs=166.2

Q ss_pred             CCChHHHHHHHHHHHHHhC-------CcCcHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccchhh-HHHHHHHH
Q 046417           32 DRDTLPVATAELESIARTL-------TQDSFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPH-LSKMISTV  103 (595)
Q Consensus        32 DrDT~r~A~~~LD~lA~~L-------~~~~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~Ph-LpkIL~~I  103 (595)
                      |.+.++.|+..|-.|+..-       ....++.++..|.+    +++.+|+.++.+|+.++....+...-. =...++.+
T Consensus        73 ~~~~~~~a~~~L~~ls~~~~~~~~i~~~g~i~~L~~lL~~----~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L  148 (529)
T 1jdh_A           73 DVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGS----PVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKM  148 (529)
T ss_dssp             CHHHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHTTC----SCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHH
T ss_pred             CHHHHHHHHHHHHHHHcCchhHHHHHHcCCHHHHHHHHcC----CCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHH
Confidence            4457777888887776431       12346677666653    568999999999999998754322111 14678899


Q ss_pred             HhhccCCChhHHHHHHHHHHHhhhhhcC--Ccch--hccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCCCchHHHH--H
Q 046417          104 SCRLRDPDSSVRSACVAATTAMSLNITK--PSFS--VLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNPEVEQL--R  177 (595)
Q Consensus       104 vrrLkD~ds~VR~Ac~~aLg~LA~~l~~--~~~~--~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d~~~~~L--~  177 (595)
                      ++.|+++++.||.+++.+|..++..-.+  ....  ..+.+|+..|-.......+..++.+|..+....  .....+  .
T Consensus       149 ~~ll~~~~~~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~--~~~~~~~~~  226 (529)
T 1jdh_A          149 VALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCS--SNKPAIVEA  226 (529)
T ss_dssp             HHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTST--THHHHHHHT
T ss_pred             HHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCc--ccHHHHHHC
Confidence            9999999999999999999888752100  0001  257778887744455567777888888777532  122222  2


Q ss_pred             HHHHHHHHhhccCchhHHHHHHHHHHHHHHhhcccCcCcHHhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHh---HHhH
Q 046417          178 KLLPRLGKAVRIEGFKAKAAVLGVIGSVVRVGGARSKGVLDWLVPCLVEFLCCDDWATRKAAAEVLGKVAVFD---KDLA  254 (595)
Q Consensus       178 ~Ll~rL~klL~~~~~kaK~alLsAIgSlA~a~g~~~~~yl~~lmp~L~e~L~~dDW~~RkaAaEaLgsIA~av---ge~f  254 (595)
                      ..++.|..++++.+..++..++.+++.++.....  ......++|.|.+++.+++..+|..|+.+|+.++..-   ...+
T Consensus       227 g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~--~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~  304 (529)
T 1jdh_A          227 GGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATK--QEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMV  304 (529)
T ss_dssp             THHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTT--CSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred             CCHHHHHHHHhCCChHHHHHHHHHHHHHhcCChh--hHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence            4789999999888877777778888877754321  2335678999999999999999999999999997632   1222


Q ss_pred             HHH--HHHHHHHHHhccCCchHHHHHHHHHHHHHh
Q 046417          255 TEY--KRSCLAALETRRFDKVKIVRETMNRSLEMW  287 (595)
Q Consensus       255 ~py--~~~~I~~Le~crfDKVK~VRda~~~aL~~~  287 (595)
                      ...  .+.++..|....  .-..||..+..+|.-+
T Consensus       305 ~~~~~v~~L~~ll~~~~--~~~~v~~~a~~~L~nl  337 (529)
T 1jdh_A          305 CQVGGIEALVRTVLRAG--DREDITEPAICALRHL  337 (529)
T ss_dssp             HHTTHHHHHHHHHHHHT--TCHHHHHHHHHHHHHH
T ss_pred             HHcCChHHHHHHHHccC--CHHHHHHHHHHHHHHH
Confidence            222  356666776431  1246777766666654

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A

Probab=98.62  E-value=6.5e-07  Score=94.17  Aligned_cols=266  Identities=12%  Similarity=0.091  Sum_probs=172.2

Q ss_pred             CCChhHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHhCCcCcHHHHHHhhhhc-------CCCCChHHHHHHHHHHHHHH
Q 046417           13 PPSTNDLKQRVITCLNKLADRDTLPVATAELESIARTLTQDSFSSFLNCLQTT-------DSSSKSPVRKQCVNLLTLLS   85 (595)
Q Consensus        13 ~~~~~~lk~rvl~~L~KL~DrDT~r~A~~~LD~lA~~L~~~~lp~fL~~L~d~-------~ss~kp~vRKaaI~lLG~lA   85 (595)
                      |...++.+.+.+.+|.+|+-++..|-++.+         ...+++++..|...       ....++.+|+++..+|..++
T Consensus        42 ~~~~~~~~~~A~~aL~nls~d~e~R~~i~~---------~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa  112 (354)
T 3nmw_A           42 PAPVEHQICPAVCVLMKLSFDEEHRHAMNE---------LGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLT  112 (354)
T ss_dssp             CCGGGGTHHHHHHHHHHHHTSHHHHHHHHH---------TTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHT
T ss_pred             CCcchHHHHHHHHHHHHHcCCHHHHHHHHH---------cCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHH
Confidence            333467777888999999743444433322         23467777776321       11234678999999999998


Q ss_pred             HHccccc--hhhHHHHHHHHHhhccCCChhHHHHHHHHHHHhhhhh---cCCcch--hccHHHHHHHhhcCChhHHHHHH
Q 046417           86 RSHGDSL--SPHLSKMISTVSCRLRDPDSSVRSACVAATTAMSLNI---TKPSFS--VLSKPLIELILVEQDVNSQVGGA  158 (595)
Q Consensus        86 Eg~gd~I--~PhLpkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l---~~~~~~--~~l~PLi~aLl~d~nk~VQ~~AA  158 (595)
                      .+-.+.-  .-...-+||.+++.|+.+++.|+..++|+|+.|+..-   .+....  -.++||+..|+...+..++..|+
T Consensus       113 ~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~  192 (354)
T 3nmw_A          113 FGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVL  192 (354)
T ss_dssp             SSCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHH
T ss_pred             cCCHHHHHHHHHcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHH
Confidence            6653211  1112456899999999999999999999999998631   111111  16899999876667788898888


Q ss_pred             HHHHHHHhcCCCchHHHH--HHHHHHHHHhhccCch----hHHHHHHHHHHHHHHh--hcccCcCcH--HhHHHHHHHhc
Q 046417          159 MCLAAAIDAAPNPEVEQL--RKLLPRLGKAVRIEGF----KAKAAVLGVIGSVVRV--GGARSKGVL--DWLVPCLVEFL  228 (595)
Q Consensus       159 ~cLaaviE~a~d~~~~~L--~~Ll~rL~klL~~~~~----kaK~alLsAIgSlA~a--~g~~~~~yl--~~lmp~L~e~L  228 (595)
                      .||..+.-..++.-..+.  ...+|.|.++|.+..-    .++..+..+|..++..  +.......+  ...+|.|.+.|
T Consensus       193 ~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL  272 (354)
T 3nmw_A          193 SALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHL  272 (354)
T ss_dssp             HHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHT
T ss_pred             HHHHHHHccChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHH
Confidence            888887642211112232  3478899999976542    3566666777776641  211111111  23689999999


Q ss_pred             cCCCHHHHHHHHHHHHHHHHHhH---HhHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHhHh
Q 046417          229 CCDDWATRKAAAEVLGKVAVFDK---DLATEYKRSCLAALETRRFDKVKIVRETMNRSLEMWKE  289 (595)
Q Consensus       229 ~~dDW~~RkaAaEaLgsIA~avg---e~f~py~~~~I~~Le~crfDKVK~VRda~~~aL~~~K~  289 (595)
                      .+.+..+++.|+-+|+.++....   ..+..  .-+++.|-..-.++-.-||+.+..||.-+-.
T Consensus       273 ~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~--~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~  334 (354)
T 3nmw_A          273 KSHSLTIVSNACGTLWNLSARNPKDQEALWD--MGAVSMLKNLIHSKHKMIAMGSAAALRNLMA  334 (354)
T ss_dssp             TCSCHHHHHHHHHHHHHHTSSCHHHHHHHHH--TTHHHHHHTTTTCSSHHHHHHHHHHHHHHHT
T ss_pred             cCCChHHHHHHHHHHHHHhCCCHHHHHHHHH--CCCHHHHHHHHhCCCHHHHHHHHHHHHHHHc
Confidence            99999999999999999984322   22322  2345555555445667788888888876654

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}

Probab=98.60  E-value=1.7e-06  Score=100.19  Aligned_cols=220  Identities=10%  Similarity=0.046  Sum_probs=148.9

Q ss_pred             HHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccchhhH--HHHHHHHHhhccCCChhHHHHHHHHHHHhhhhhcCC
Q 046417           55 FSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPHL--SKMISTVSCRLRDPDSSVRSACVAATTAMSLNITKP  132 (595)
Q Consensus        55 lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~PhL--pkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~~~  132 (595)
                      +|.|+.++.    ++++.+|+.++.+|+.||. ..+.. ..+  .-.+|.++..|++.++.++..++|||+.|+......
T Consensus       497 Vp~LV~LL~----s~s~~vqe~Aa~aL~NLA~-d~~~r-~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~  570 (810)
T 3now_A          497 TTALCALAK----TESHNSQELIARVLNAVCG-LKELR-GKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPE  570 (810)
T ss_dssp             HHHHHHHHT----CCCHHHHHHHHHHHHHHHT-SHHHH-HHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHH
T ss_pred             HHHHHHHHc----CCCHHHHHHHHHHHHHHcC-CHHHH-HHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChh
Confidence            666666654    4578999999999999984 44321 111  135788899999999999999999999998653210


Q ss_pred             -cc-----hhccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCCCchHHHHH-HHHHHHHHhhccCchhHHHHHHHHHHHH
Q 046417          133 -SF-----SVLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNPEVEQLR-KLLPRLGKAVRIEGFKAKAAVLGVIGSV  205 (595)
Q Consensus       133 -~~-----~~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d~~~~~L~-~Ll~rL~klL~~~~~kaK~alLsAIgSl  205 (595)
                       .+     ...++||+..|..+.+...+..|+.||..+....++.-..++. ..+++|..+|.+++..++.+++.+|+.+
T Consensus       571 ~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NL  650 (810)
T 3now_A          571 VSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNL  650 (810)
T ss_dssp             HHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHH
T ss_pred             hhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence             01     1268899987732334445567899999888653221122333 3689999999999989999999999988


Q ss_pred             HHhhcccCcCcH--HhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhH----HhHH--HHHHHHHHHHHhccCCchHHHH
Q 046417          206 VRVGGARSKGVL--DWLVPCLVEFLCCDDWATRKAAAEVLGKVAVFDK----DLAT--EYKRSCLAALETRRFDKVKIVR  277 (595)
Q Consensus       206 A~a~g~~~~~yl--~~lmp~L~e~L~~dDW~~RkaAaEaLgsIA~avg----e~f~--py~~~~I~~Le~crfDKVK~VR  277 (595)
                      +..-. ....++  ...+|.|..++.+++-.+|++|+-+|+.|+....    ..+.  ...+.++.+|.+    .-.-||
T Consensus       651 a~~~~-~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s----~d~~vq  725 (810)
T 3now_A          651 VMSED-VIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIAN----PSPAVQ  725 (810)
T ss_dssp             TTSHH-HHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTC----SSHHHH
T ss_pred             hCChH-HHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCC----CCHHHH
Confidence            75221 111222  2478999999999999999999999999987422    2232  244555556552    233445


Q ss_pred             HHHHHHHH
Q 046417          278 ETMNRSLE  285 (595)
Q Consensus       278 da~~~aL~  285 (595)
                      ..+..+|.
T Consensus       726 ~~A~~aL~  733 (810)
T 3now_A          726 HRGIVIIL  733 (810)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            44455553

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=98.57  E-value=1.1e-06  Score=103.36  Aligned_cols=218  Identities=17%  Similarity=0.188  Sum_probs=161.9

Q ss_pred             HHHHhhhcCCCC--hHHHHHHHHHHHHHhCCcCcHHHHHHhhhhcCC-CCChHHHHHHHHHHHHHHHHccccchhhHHHH
Q 046417           23 VITCLNKLADRD--TLPVATAELESIARTLTQDSFSSFLNCLQTTDS-SSKSPVRKQCVNLLTLLSRSHGDSLSPHLSKM   99 (595)
Q Consensus        23 vl~~L~KL~DrD--T~r~A~~~LD~lA~~L~~~~lp~fL~~L~d~~s-s~kp~vRKaaI~lLG~lAEg~gd~I~PhLpkI   99 (595)
                      +-.+|..++|.+  -++.|...++.++..++++.+..+|+.|.++.. +.||..+-+++.+|+.+++.+++.+.-.||.|
T Consensus        97 ~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~~~~~~~~~  176 (986)
T 2iw3_A           97 VPAICTNAGNKDKEIQSVASETLISIVNAVNPVAIKALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQVALRMPEL  176 (986)
T ss_dssp             HHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHH
T ss_pred             HHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHHHHHHhccch
Confidence            445666778877  566677799999999999888888888777653 34899999999999999999999999999999


Q ss_pred             HHHHHhhccCCChhHHHHHHHHHHHhhhhhcCCcchhccHHHHHHHhhcCChhHHHHHHHHHHHHHhc--CCCchHHHHH
Q 046417          100 ISTVSCRLRDPDSSVRSACVAATTAMSLNITKPSFSVLSKPLIELILVEQDVNSQVGGAMCLAAAIDA--APNPEVEQLR  177 (595)
Q Consensus       100 L~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~~~~~~~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~--a~d~~~~~L~  177 (595)
                      +|.+....-|..+.|..|+..|+..++.-+.......|++-|+++| .++++ |+.    |+..+-..  ..+...|.|-
T Consensus       177 ~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~~~~~~~~~~~~-~~p~~-~~~----~~~~l~~~tfv~~v~~~~l~  250 (986)
T 2iw3_A          177 IPVLSETMWDTKKEVKAAATAAMTKATETVDNKDIERFIPSLIQCI-ADPTE-VPE----TVHLLGATTFVAEVTPATLS  250 (986)
T ss_dssp             HHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTTGGGHHHHHHHH-HCTTH-HHH----HHHHHTTCCCCSCCCHHHHH
T ss_pred             hcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcchhhhHHHHHHHh-cChhh-hHH----HHHHhhcCeeEeeecchhHH
Confidence            9999999999999999999999999998775332224888899999 55654 332    33444333  2344467888


Q ss_pred             HHHHHHHHhhccCchhHH--HHHH-HHHHHHHHhhcccCcCcHHhHHHHHHHhcc-CCCHHHHHHHHHHHHHHH
Q 046417          178 KLLPRLGKAVRIEGFKAK--AAVL-GVIGSVVRVGGARSKGVLDWLVPCLVEFLC-CDDWATRKAAAEVLGKVA  247 (595)
Q Consensus       178 ~Ll~rL~klL~~~~~kaK--~alL-sAIgSlA~a~g~~~~~yl~~lmp~L~e~L~-~dDW~~RkaAaEaLgsIA  247 (595)
                      -++|-|.+-|+......|  .++| +-+..++.--.. -.+|++.|+|.|..... -.|=.+|..|..|+..+-
T Consensus       251 ~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~~-~~~f~~~l~p~~~~~~~~~~~pe~r~~~~~a~~~l~  323 (986)
T 2iw3_A          251 IMVPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQV-IAPFLGKLLPGLKSNFATIADPEAREVTLRALKTLR  323 (986)
T ss_dssp             HHHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHHH-HHHHHTTTHHHHHHHTTTCCSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhhccCcchhheeeEEEEcchhhhcCCHHH-HhhhhhhhhhHHHHHhhccCCHHHHHHHHHHHHHHH
Confidence            888888889976644443  3332 444433321111 25888999999988764 456678888877777763

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A

Probab=98.56  E-value=3.6e-07  Score=97.32  Aligned_cols=248  Identities=12%  Similarity=0.042  Sum_probs=157.0

Q ss_pred             hHHHHHHHHHHHHHhCCcC-cHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccchhhH-HHHHHHHHhhccCC--
Q 046417           35 TLPVATAELESIARTLTQD-SFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPHL-SKMISTVSCRLRDP--  110 (595)
Q Consensus        35 T~r~A~~~LD~lA~~L~~~-~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~PhL-pkIL~~IvrrLkD~--  110 (595)
                      ..+.|+..|-.++...+.. .+..+++.|.....+.++.+|+.++.+|+.++....+.....+ ...++.+++.|.++  
T Consensus       243 ~~~~a~~~L~~l~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~  322 (529)
T 1jdh_A          243 LVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGD  322 (529)
T ss_dssp             HHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHhcCChhhHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCC
Confidence            4566777777777765422 2334444444444567799999999999999875432221111 13567777777653  


Q ss_pred             ChhHHHHHHHHHHHhhhhhcCC-----cch--hccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCCCchHHHHH-HHHHH
Q 046417          111 DSSVRSACVAATTAMSLNITKP-----SFS--VLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNPEVEQLR-KLLPR  182 (595)
Q Consensus       111 ds~VR~Ac~~aLg~LA~~l~~~-----~~~--~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d~~~~~L~-~Ll~r  182 (595)
                      ++.||..++++|+.|+..-.+.     ...  ..+++|+..|..+.+..++..|+.+|..+..+.... ..+++ .+++.
T Consensus       323 ~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~~~~~-~~~~~~~~i~~  401 (529)
T 1jdh_A          323 REDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANH-APLREQGAIPR  401 (529)
T ss_dssp             CHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGH-HHHHHTTHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhcChhhh-HHHHHcCCHHH
Confidence            3789999999999998642110     111  257777777733334589999999999887642211 22222 47788


Q ss_pred             HHHhhccCchhHHH----------------------HHHHHHHHHHHhhcccCcCcH--HhHHHHHHHhccCCCHHHHHH
Q 046417          183 LGKAVRIEGFKAKA----------------------AVLGVIGSVVRVGGARSKGVL--DWLVPCLVEFLCCDDWATRKA  238 (595)
Q Consensus       183 L~klL~~~~~kaK~----------------------alLsAIgSlA~a~g~~~~~yl--~~lmp~L~e~L~~dDW~~Rka  238 (595)
                      |+.+|++..+.+|.                      .++.+++.++.....  ...+  ..++|.|.+++.+.+..+|+.
T Consensus       402 L~~ll~~~~~~v~~~a~~~l~n~~~~~~~~~~~i~~~~~~al~~L~~~~~~--~~~l~~~~~v~~l~~ll~~~~~~v~~~  479 (529)
T 1jdh_A          402 LVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHN--RIVIRGLNTIPLFVQLLYSPIENIQRV  479 (529)
T ss_dssp             HHHHHHHHHHHHC-----------CBTTBCHHHHHHHHHHHHHHHTTSHHH--HHHHHHTTCHHHHHHGGGCSCHHHHHH
T ss_pred             HHHHHHHHhHHHHHHHhcccCchhhhccccHHHHHHHHHHHHHHHhcCchH--HHHHhccCCccHHHHHHcCCchHHHHH
Confidence            88888776655543                      233333333321100  0001  235789999999999999999


Q ss_pred             HHHHHHHHHHH--hHHhHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHh
Q 046417          239 AAEVLGKVAVF--DKDLATEYKRSCLAALETRRFDKVKIVRETMNRSLEMW  287 (595)
Q Consensus       239 AaEaLgsIA~a--vge~f~py~~~~I~~Le~crfDKVK~VRda~~~aL~~~  287 (595)
                      |+.+|+.++..  ....+.  ...+++.|+.+..|.-..||..+..+|..+
T Consensus       480 a~~~l~~l~~~~~~~~~i~--~~~~~~~L~~l~~~~~~~v~~~a~~aL~~l  528 (529)
T 1jdh_A          480 AAGVLCELAQDKEAAEAIE--AEGATAPLTELLHSRNEGVATYAAAVLFRM  528 (529)
T ss_dssp             HHHHHHHHTTSHHHHHHHH--HTTCHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCHHHHHHHH--HcCChHHHHHHhcCCCHHHHHHHHHHHHhc
Confidence            99999998732  111221  124567788888888899999999988753

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}

Probab=98.55  E-value=6.4e-07  Score=99.77  Aligned_cols=248  Identities=13%  Similarity=0.047  Sum_probs=157.8

Q ss_pred             hHHHHHHHHHHHHHhCCc-CcHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccchhhH-HHHHHHHHhhccCC-C
Q 046417           35 TLPVATAELESIARTLTQ-DSFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPHL-SKMISTVSCRLRDP-D  111 (595)
Q Consensus        35 T~r~A~~~LD~lA~~L~~-~~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~PhL-pkIL~~IvrrLkD~-d  111 (595)
                      ..+.|+..|-.|+..-+. +.+..+++.|.....+.++.+|+.++.+|+.++....+...-.+ ...++.+++.|.+. +
T Consensus       240 ~~~~a~~~L~nL~~~~~~~~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~  319 (644)
T 2z6h_A          240 LVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGD  319 (644)
T ss_dssp             HHHHHHHHHHHHGGGCTTCCSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHhhcchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCC
Confidence            566677777777765442 22334455554444556799999999999999886533211111 23677888888774 3


Q ss_pred             -hhHHHHHHHHHHHhhhhhcCC----c-ch--hccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCCCchHHHHH-HHHHH
Q 046417          112 -SSVRSACVAATTAMSLNITKP----S-FS--VLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNPEVEQLR-KLLPR  182 (595)
Q Consensus       112 -s~VR~Ac~~aLg~LA~~l~~~----~-~~--~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d~~~~~L~-~Ll~r  182 (595)
                       ..||..|+++|+.|+....+.    . ..  ..+++|+..|....+..++..|+.+|..+....... ..++. .+++.
T Consensus       320 ~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~~~~-~~i~~~~~i~~  398 (644)
T 2z6h_A          320 REDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANH-APLREQGAIPR  398 (644)
T ss_dssp             CHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGH-HHHHHTTHHHH
T ss_pred             cHHHHHHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHccCHHHH-HHHHHcCCHHH
Confidence             689999999999998532110    0 11  256777777733345689999999999887542211 12222 37788


Q ss_pred             HHHhhccCchh----------------------HHHHHHHHHHHHHHhhcccCcCcH--HhHHHHHHHhccCCCHHHHHH
Q 046417          183 LGKAVRIEGFK----------------------AKAAVLGVIGSVVRVGGARSKGVL--DWLVPCLVEFLCCDDWATRKA  238 (595)
Q Consensus       183 L~klL~~~~~k----------------------aK~alLsAIgSlA~a~g~~~~~yl--~~lmp~L~e~L~~dDW~~Rka  238 (595)
                      |+.+|.+..+.                      ++.+++.+++.++.....  ..++  ..++|.|.++|.+.+..+|+.
T Consensus       399 Lv~lL~~~~~~vr~~a~~al~n~~~~~~~~~~~v~~~a~~aL~~La~~~~~--~~~l~~~~~i~~Lv~lL~~~~~~v~~~  476 (644)
T 2z6h_A          399 LVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHN--RIVIRGLNTIPLFVQLLYSPIENIQRV  476 (644)
T ss_dssp             HHHHHHHHHHHHTTC----------CCSSCHHHHHHHHHHHHHHHTTSHHH--HHHHHHTTCHHHHHHHTTCSCHHHHHH
T ss_pred             HHHHHhccchhhhhHhhhccccchhcccccHHHHHHHHHHHHHHHhcCHHH--HHHHHhCCcHHHHHHHHcCCCHHHHHH
Confidence            88888664332                      344455566655532211  1112  346899999999999999999


Q ss_pred             HHHHHHHHHHHh--HHhHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHh
Q 046417          239 AAEVLGKVAVFD--KDLATEYKRSCLAALETRRFDKVKIVRETMNRSLEMW  287 (595)
Q Consensus       239 AaEaLgsIA~av--ge~f~py~~~~I~~Le~crfDKVK~VRda~~~aL~~~  287 (595)
                      |+.+|+.++..-  ...+..  ..++..|..+..|.-..||..+..+|..+
T Consensus       477 a~~aL~~l~~~~~~~~~i~~--~g~l~~L~~ll~~~~~~vr~~A~~aL~~l  525 (644)
T 2z6h_A          477 AAGVLCELAQDKEAAEAIEA--EGATAPLTELLHSRNEGVATYAAAVLFRM  525 (644)
T ss_dssp             HHHHHHHHHTSHHHHHHHHH--TTCHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCHHHHHHHHH--cCChhHHHHHHcCCCHHHHHHHHHHHHHH
Confidence            999999987421  112211  22456677777788888888888777654

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}

Probab=98.55  E-value=1.5e-06  Score=94.58  Aligned_cols=259  Identities=12%  Similarity=0.092  Sum_probs=164.2

Q ss_pred             HHHHHHHHHhhhcCCCChHHHHHHHHHHHHHhCCcCcHHHHHHhhhhc-------CCCCChHHHHHHHHHHHHHHHHccc
Q 046417           18 DLKQRVITCLNKLADRDTLPVATAELESIARTLTQDSFSSFLNCLQTT-------DSSSKSPVRKQCVNLLTLLSRSHGD   90 (595)
Q Consensus        18 ~lk~rvl~~L~KL~DrDT~r~A~~~LD~lA~~L~~~~lp~fL~~L~d~-------~ss~kp~vRKaaI~lLG~lAEg~gd   90 (595)
                      ++.-+.+.+|.+|++.+..|-++.+         ...+++++..|...       ..+.++.+++++..+|..++.+-.+
T Consensus       163 ~~~~qAv~aL~nls~~~e~R~~i~~---------~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~  233 (458)
T 3nmz_A          163 HQICPAVCVLMKLSFDEEHRHAMNE---------LGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVA  233 (458)
T ss_dssp             TTTHHHHHHHHHHTTSHHHHHHHHH---------TTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHH---------CCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcc
Confidence            3444555556666544433333221         23477777777421       1113467899999999999976542


Q ss_pred             cchhh---HHHHHHHHHhhccCCChhHHHHHHHHHHHhhhhh---cCCcch--hccHHHHHHHhhcCChhHHHHHHHHHH
Q 046417           91 SLSPH---LSKMISTVSCRLRDPDSSVRSACVAATTAMSLNI---TKPSFS--VLSKPLIELILVEQDVNSQVGGAMCLA  162 (595)
Q Consensus        91 ~I~Ph---LpkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l---~~~~~~--~~l~PLi~aLl~d~nk~VQ~~AA~cLa  162 (595)
                      . ...   ...+||.+++.|+.+++.|+..++|+|+.|+..-   .+....  -.++||+..|+...+..++..|+.||.
T Consensus       234 ~-k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~  312 (458)
T 3nmz_A          234 N-KATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALW  312 (458)
T ss_dssp             H-HHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHH
T ss_pred             c-HHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence            2 112   2456899999999999999999999999998631   111111  168999998866677889998888888


Q ss_pred             HHHhcCCCchHHHH--HHHHHHHHHhhccCch----hHHHHHHHHHHHHHHh--hcccCcCcH--HhHHHHHHHhccCCC
Q 046417          163 AAIDAAPNPEVEQL--RKLLPRLGKAVRIEGF----KAKAAVLGVIGSVVRV--GGARSKGVL--DWLVPCLVEFLCCDD  232 (595)
Q Consensus       163 aviE~a~d~~~~~L--~~Ll~rL~klL~~~~~----kaK~alLsAIgSlA~a--~g~~~~~yl--~~lmp~L~e~L~~dD  232 (595)
                      .+.-...+.-..+.  ...+|.|.++|.+..-    .++..+..+|..++..  +.......+  ...+|.|.+.|.+.+
T Consensus       313 nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~  392 (458)
T 3nmz_A          313 NLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHS  392 (458)
T ss_dssp             HHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSC
T ss_pred             HHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCC
Confidence            87652211111232  3477888889876542    3565666777776641  221111111  236899999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhH---HhHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHhH
Q 046417          233 WATRKAAAEVLGKVAVFDK---DLATEYKRSCLAALETRRFDKVKIVRETMNRSLEMWK  288 (595)
Q Consensus       233 W~~RkaAaEaLgsIA~avg---e~f~py~~~~I~~Le~crfDKVK~VRda~~~aL~~~K  288 (595)
                      ..+++.|+-+|+.++....   ..+..  .-+++.|-+.-..+-.-||+.+..||.-+-
T Consensus       393 ~~v~~~A~~aL~nLa~~~~~~~~~i~~--~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~  449 (458)
T 3nmz_A          393 LTIVSNACGTLWNLSARNPKDQEALWD--MGAVSMLKNLIHSKHKMIAMGSAAALRNLM  449 (458)
T ss_dssp             HHHHHHHHHHHHHHHSSCHHHHHHHHH--HTHHHHHHTTTTCSSHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHH--CCCHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence            9999999999999985322   22222  234555555544556677888777776553

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}

Probab=98.52  E-value=2.3e-06  Score=99.20  Aligned_cols=263  Identities=10%  Similarity=0.048  Sum_probs=183.6

Q ss_pred             HHHhhhc---CCCChHHHHHHHHHHHHHhC-------CcCcHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHcc-ccc
Q 046417           24 ITCLNKL---ADRDTLPVATAELESIARTL-------TQDSFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHG-DSL   92 (595)
Q Consensus        24 l~~L~KL---~DrDT~r~A~~~LD~lA~~L-------~~~~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~g-d~I   92 (595)
                      +..|-.|   ++.+.+.-|+..|-.||..-       ....+++++..|.+    ..+..|+.+..+|+.++.+.. +.+
T Consensus       497 Vp~LV~LL~s~s~~vqe~Aa~aL~NLA~d~~~r~~Vv~~Gaip~Lv~LL~s----~~~~~k~~Aa~AL~nL~~~~~p~~~  572 (810)
T 3now_A          497 TTALCALAKTESHNSQELIARVLNAVCGLKELRGKVVQEGGVKALLRMALE----GTEKGKRHATQALARIGITINPEVS  572 (810)
T ss_dssp             HHHHHHHHTCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHS----SCHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcc----CCHHHHHHHHHHHHHHhcCCChhhh
Confidence            4455555   34457778999999888641       13348888888864    346889999999999987653 333


Q ss_pred             hh--hHHHHHHHHHhhccCC-ChhHHHHHHHHHHHhhhhhcC--Ccch--hccHHHHHHHhhcCChhHHHHHHHHHHHHH
Q 046417           93 SP--HLSKMISTVSCRLRDP-DSSVRSACVAATTAMSLNITK--PSFS--VLSKPLIELILVEQDVNSQVGGAMCLAAAI  165 (595)
Q Consensus        93 ~P--hLpkIL~~IvrrLkD~-ds~VR~Ac~~aLg~LA~~l~~--~~~~--~~l~PLi~aLl~d~nk~VQ~~AA~cLaavi  165 (595)
                      .+  .....+|.++..|... +...+..+++||+.|+..-.+  ...+  -.+++|+..| .+.+..+|..|+-||..++
T Consensus       573 ~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL-~s~~~~Vq~~A~~~L~NLa  651 (810)
T 3now_A          573 FSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYL-MEDHLYLTRAAAQCLCNLV  651 (810)
T ss_dssp             TTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHH-HSCCTTHHHHHHHHHHHHT
T ss_pred             hcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHH-cCCCHHHHHHHHHHHHHHh
Confidence            22  2345788999998744 334466789999999964211  1111  1677788877 5678899999999999987


Q ss_pred             hcCCCchHHHHH--HHHHHHHHhhccCchhHHHHHHHHHHHHHHhhcccCcCcH--HhHHHHHHHhccCCCHHHHHHHHH
Q 046417          166 DAAPNPEVEQLR--KLLPRLGKAVRIEGFKAKAAVLGVIGSVVRVGGARSKGVL--DWLVPCLVEFLCCDDWATRKAAAE  241 (595)
Q Consensus       166 E~a~d~~~~~L~--~Ll~rL~klL~~~~~kaK~alLsAIgSlA~a~g~~~~~yl--~~lmp~L~e~L~~dDW~~RkaAaE  241 (595)
                      -+. +....++.  ..++-|+++++++...+|.++..+|+.++......-...+  ...+|.|+++|.+++..+|+.|+.
T Consensus       652 ~~~-~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~  730 (810)
T 3now_A          652 MSE-DVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIV  730 (810)
T ss_dssp             TSH-HHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHH
T ss_pred             CCh-HHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHH
Confidence            532 11122332  4788999999999999998888999888762211111222  358899999999999999999999


Q ss_pred             HHHHHHHHhHHhHHHHH--HHHHHHHHhccCC---chHHHHHHHHHHHHHhHhcCCC
Q 046417          242 VLGKVAVFDKDLATEYK--RSCLAALETRRFD---KVKIVRETMNRSLEMWKEVPGV  293 (595)
Q Consensus       242 aLgsIA~avge~f~py~--~~~I~~Le~crfD---KVK~VRda~~~aL~~~K~i~~~  293 (595)
                      +|+.++.+-++. ..++  ..+++.|..+--+   |-.-|++.+.++|+.+-+..-.
T Consensus       731 aL~NL~~~s~e~-~~~l~e~G~i~~L~~LL~~~d~~~~~i~e~Al~aL~~ll~~g~~  786 (810)
T 3now_A          731 IILNMINAGEEI-AKKLFETDIMELLSGLGQLPDDTRAKAREVATQCLAAAERYRII  786 (810)
T ss_dssp             HHHHHHTTCHHH-HHHHHTSTHHHHHTTSCCCTTSTTHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHhCCHHH-HHHHHHCCCHHHHHHHHhCcccCcHHHHHHHHHHHHHHHhCCCc
Confidence            999998743332 2232  4567788877433   4678889999999888776544

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A

Probab=98.50  E-value=4.6e-06  Score=93.64  Aligned_cols=231  Identities=15%  Similarity=0.109  Sum_probs=148.5

Q ss_pred             HHHHHHHHhCCcCcHHHHHHhhhhcC--CCCChHHHHHHHHHHHHHHHHccccchhhHHHHHHHHHhhccCCChhHHHHH
Q 046417           41 AELESIARTLTQDSFSSFLNCLQTTD--SSSKSPVRKQCVNLLTLLSRSHGDSLSPHLSKMISTVSCRLRDPDSSVRSAC  118 (595)
Q Consensus        41 ~~LD~lA~~L~~~~lp~fL~~L~d~~--ss~kp~vRKaaI~lLG~lAEg~gd~I~PhLpkIL~~IvrrLkD~ds~VR~Ac  118 (595)
                      -+|..|+.--.++.++.+++.|....  .+.+|.+||.|+.++.-+.+.+++.+.+  +.+++.+.+.|.|+|+.|..+|
T Consensus       130 lALr~L~~i~~~e~~~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~~~~--~~~~~~l~~lL~d~d~~V~~~a  207 (621)
T 2vgl_A          130 LALHCIANVGSREMAEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDLVPM--GDWTSRVVHLLNDQHLGVVTAA  207 (621)
T ss_dssp             HHHHHHHHHCCHHHHHHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGGCCC--CSCHHHHHHHTTCSCHHHHHHH
T ss_pred             HHHHHhhccCCHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhhcCc--hhHHHHHHHHhCCCCccHHHHH
Confidence            34555555555666777777777766  6788999999999999999998887753  4566777888999999999999


Q ss_pred             HHHHHHhhhhhcCCcchhccHHHHHHH---hhcC-------------ChhHHHHHHHHHHHHHhcCCCchHHHHHHHHHH
Q 046417          119 VAATTAMSLNITKPSFSVLSKPLIELI---LVEQ-------------DVNSQVGGAMCLAAAIDAAPNPEVEQLRKLLPR  182 (595)
Q Consensus       119 ~~aLg~LA~~l~~~~~~~~l~PLi~aL---l~d~-------------nk~VQ~~AA~cLaaviE~a~d~~~~~L~~Ll~r  182 (595)
                      +.++..++..-.+ .+..+++.++..|   +...             ++-.|....-.|..+...........+.+++.+
T Consensus       208 ~~~l~~i~~~~~~-~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~~~L~~  286 (621)
T 2vgl_A          208 TSLITTLAQKNPE-EFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTECLET  286 (621)
T ss_dssp             HHHHHHHHHHCHH-HHTTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhChH-HHHHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH
Confidence            9999988864311 1111333333333   2221             466776555544444321111123445556666


Q ss_pred             HHHhhc-cC---chhH----HHHHHHHHHHHHHhhcccCcCcHHhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhH--H
Q 046417          183 LGKAVR-IE---GFKA----KAAVLGVIGSVVRVGGARSKGVLDWLVPCLVEFLCCDDWATRKAAAEVLGKVAVFDK--D  252 (595)
Q Consensus       183 L~klL~-~~---~~ka----K~alLsAIgSlA~a~g~~~~~yl~~lmp~L~e~L~~dDW~~RkaAaEaLgsIA~avg--e  252 (595)
                      ++..+. .+   ..+-    .+.+++++..+....  .+.+++..++..|..++.+.+-.+|..|+++|..|+...+  +
T Consensus       287 il~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~--~~~~~~~~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~~~  364 (621)
T 2vgl_A          287 ILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHD--SEPNLLVRACNQLGQFLQHRETNLRYLALESMCTLASSEFSHE  364 (621)
T ss_dssp             HHHHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTTHH
T ss_pred             HHHhhccCcccccccccchHHHHHHHHHHHHHhcC--CcHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCcHH
Confidence            654432 12   1121    244558888877654  3456778899999999998888999999999999987654  4


Q ss_pred             hHHHHHHHHHHHHHhccCCchHHHHHH
Q 046417          253 LATEYKRSCLAALETRRFDKVKIVRET  279 (595)
Q Consensus       253 ~f~py~~~~I~~Le~crfDKVK~VRda  279 (595)
                      .+.+|...++..|   ++|.=..||.-
T Consensus       365 ~~~~~~~~i~~~L---~~d~d~~Ir~~  388 (621)
T 2vgl_A          365 AVKTHIETVINAL---KTERDVSVRQR  388 (621)
T ss_dssp             HHHTTHHHHHHHH---TTCCCHHHHHH
T ss_pred             HHHHHHHHHHHHh---ccCCCHhHHHH
Confidence            5666665544433   32433455543

>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}

Probab=98.48  E-value=5.7e-07  Score=108.14  Aligned_cols=198  Identities=11%  Similarity=0.006  Sum_probs=144.4

Q ss_pred             HHHHHHHHHHHHHhCCcCcHHHHHHhhhhcC-------------------------CCCChHHHHHHHHHHHHHHHHccc
Q 046417           36 LPVATAELESIARTLTQDSFSSFLNCLQTTD-------------------------SSSKSPVRKQCVNLLTLLSRSHGD   90 (595)
Q Consensus        36 ~r~A~~~LD~lA~~L~~~~lp~fL~~L~d~~-------------------------ss~kp~vRKaaI~lLG~lAEg~gd   90 (595)
                      ++.....|+.++...|...+..+++.|.+..                         .++.|...++.+..++.+++++.+
T Consensus       440 Rk~~~d~l~~i~~v~p~~~l~~v~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ea~~~~leav~~~~~~  519 (1204)
T 3a6p_A          440 RAQQGEVMRLACRLDPKTSFQMAGEWLKYQLSTFLDAGSVNSCSAVGTGEGSLCSVFSPSFVQWEAMTLFLESVITQMFR  519 (1204)
T ss_dssp             HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHTCC-----------------CCSCSSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhhhhcccccccccccccccccccCcCCHHHHHHHHHHHHHHHHHHHHhc
Confidence            4556677888888887666765555552221                         123457788899999999999954


Q ss_pred             cc-hhhHH-HHHHHHHhhc---cCCChhHHHHHHHHHHHhhhhhcCCcchhccHHHHHHHhh---c------------CC
Q 046417           91 SL-SPHLS-KMISTVSCRL---RDPDSSVRSACVAATTAMSLNITKPSFSVLSKPLIELILV---E------------QD  150 (595)
Q Consensus        91 ~I-~PhLp-kIL~~IvrrL---kD~ds~VR~Ac~~aLg~LA~~l~~~~~~~~l~PLi~aLl~---d------------~n  150 (595)
                      .. .++++ .+++.++..|   ...+|.+|..+...+|+|+.|+.+.+  .++.|+++.|+.   +            .+
T Consensus       520 ~~e~~~l~~~~~~~Ll~~ll~~~~~~p~l~~~~i~~l~~l~~~~~~~p--~~L~~vL~~ll~~l~~~~~~~~~~~~~~~~  597 (1204)
T 3a6p_A          520 TLNREEIPVNDGIELLQMVLNFDTKDPLILSCVLTNVSALFPFVTYRP--EFLPQVFSKLFSSVTFETVEESKAPRTRAV  597 (1204)
T ss_dssp             HSCTTCCCHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHGGGGGTCG--GGHHHHHHHHHHHHHCCTTCSTTSCCCHHH
T ss_pred             ccccccccHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHhcCc--hHHHHHHHHHHHhhccCCcccccccccHHH
Confidence            43 34444 2344444432   44688899999999999999986433  477777776652   2            35


Q ss_pred             hhHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhccCc---hhHHHHHHHHHHHHHHh-h-cccCcCcHHhHHHHHH
Q 046417          151 VNSQVGGAMCLAAAIDAAPNPEVEQLRKLLPRLGKAVRIEG---FKAKAAVLGVIGSVVRV-G-GARSKGVLDWLVPCLV  225 (595)
Q Consensus       151 k~VQ~~AA~cLaaviE~a~d~~~~~L~~Ll~rL~klL~~~~---~kaK~alLsAIgSlA~a-~-g~~~~~yl~~lmp~L~  225 (595)
                      +.++.+||+||..+++.+++.+.+|++.|...+..++....   .+-+..+.++++.++.. + ......|++.+|+++.
T Consensus       598 k~vr~~a~~al~~L~~~~~~~L~p~~~~i~~~~~~~l~~~~~l~~~e~~~L~eal~~ia~~~~~~~~~~~~l~~ll~P~~  677 (1204)
T 3a6p_A          598 RNVRRHACSSIIKMCRDYPQLVLPNFDMLYNHVKQLLSNELLLTQMEKCALMEALVLISNQFKNYERQKVFLEELMAPVA  677 (1204)
T ss_dssp             HHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHHSTTTSCHHHHHHHHHHHHHHHGGGCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhCcccccHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence            68999999999999999988888999999999999887544   44566777899888643 2 2234577999999999


Q ss_pred             HhccCCCHHH
Q 046417          226 EFLCCDDWAT  235 (595)
Q Consensus       226 e~L~~dDW~~  235 (595)
                      +.|.+++|+.
T Consensus       678 ~~w~~~~~~~  687 (1204)
T 3a6p_A          678 SIWLSQDMHR  687 (1204)
T ss_dssp             HHHSCHHHHH
T ss_pred             HHHccHHHHH
Confidence            9999988884

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=98.45  E-value=9.4e-06  Score=95.68  Aligned_cols=259  Identities=15%  Similarity=0.228  Sum_probs=183.7

Q ss_pred             cCCCChHHHHHHHHHHHHHh-CCcCcH-HHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHcc--ccchhhHHHHHHHHHh
Q 046417           30 LADRDTLPVATAELESIART-LTQDSF-SSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHG--DSLSPHLSKMISTVSC  105 (595)
Q Consensus        30 L~DrDT~r~A~~~LD~lA~~-L~~~~l-p~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~g--d~I~PhLpkIL~~Ivr  105 (595)
                      .++.+..+.|+..|-.+... .....+ .-++..|.....+-|..  +.++.+++.+|+..+  ..+-||+=.++|.++.
T Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~  102 (986)
T 2iw3_A           25 VATADNRHEIASEVASFLNGNIIEHDVPEHFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVEPYIVQLVPAICT  102 (986)
T ss_dssp             TCCTTTHHHHHHHHHHHHTSSCSSSSCCHHHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTHHHHHTTHHHHHH
T ss_pred             ccchhHHHHHHHHHHHHHhccccccccchhHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCcccchHHHHHHHHH
Confidence            35667777888887776553 211111 24555555544332334  999999999997665  4678999889999999


Q ss_pred             hccCCChhHHHHHHHHHHHhhhhhcCCcch--hccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCCCchHHHHHHHHHHH
Q 046417          106 RLRDPDSSVRSACVAATTAMSLNITKPSFS--VLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNPEVEQLRKLLPRL  183 (595)
Q Consensus       106 rLkD~ds~VR~Ac~~aLg~LA~~l~~~~~~--~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d~~~~~L~~Ll~rL  183 (595)
                      .+-|-+..||.|+-.|+-.+...+.  ++.  .+++.|+.+|-..+.=....+|.-+|..+++.+++.+.-+|++|+|-+
T Consensus       103 ~~~dk~~~v~~aa~~~~~~~~~~~~--~~a~~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~~~~~~~~~~p~~  180 (986)
T 2iw3_A          103 NAGNKDKEIQSVASETLISIVNAVN--PVAIKALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQVALRMPELIPVL  180 (986)
T ss_dssp             HTTCSSHHHHHHHHHHHHHHHHHSC--GGGHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHH
T ss_pred             HhcCCchHHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHHHHHHhccchhcch
Confidence            9999999999999999999998874  333  388889999944444457789999999999998777778999999999


Q ss_pred             HHhhccCchhHHHHHHHHHHHHHHhhc-ccCcCcHHh----------------------------------HHHHHHHhc
Q 046417          184 GKAVRIEGFKAKAAVLGVIGSVVRVGG-ARSKGVLDW----------------------------------LVPCLVEFL  228 (595)
Q Consensus       184 ~klL~~~~~kaK~alLsAIgSlA~a~g-~~~~~yl~~----------------------------------lmp~L~e~L  228 (595)
                      ..++-+-..++|.++..++-.+....+ ....++++.                                  ++|.|..-|
T Consensus       181 ~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~~~~~~~~~~~~~~p~~~~~~~~~l~~~tfv~~v~~~~l~~~~p~l~r~l  260 (986)
T 2iw3_A          181 SETMWDTKKEVKAAATAAMTKATETVDNKDIERFIPSLIQCIADPTEVPETVHLLGATTFVAEVTPATLSIMVPLLSRGL  260 (986)
T ss_dssp             HHHTTCSSHHHHHHHHHHHHHHGGGCCCTTTGGGHHHHHHHHHCTTHHHHHHHHHTTCCCCSCCCHHHHHHHHHHHHHHH
T ss_pred             HhhcccCcHHHHHHHHHHHHHHHhcCCCcchhhhHHHHHHHhcChhhhHHHHHHhhcCeeEeeecchhHHHHHHHHHhhh
Confidence            999988888888888877776665322 222333333                                  344444444


Q ss_pred             cCCCHHHHHHHHHHHHHHHHHhH--HhHHHHHHHHHHHHHhccCCch--HHHHHHHHHHHHHhHhcCCC
Q 046417          229 CCDDWATRKAAAEVLGKVAVFDK--DLATEYKRSCLAALETRRFDKV--KIVRETMNRSLEMWKEVPGV  293 (595)
Q Consensus       229 ~~dDW~~RkaAaEaLgsIA~avg--e~f~py~~~~I~~Le~crfDKV--K~VRda~~~aL~~~K~i~~~  293 (595)
                      ....-..+.-++-.+..|..-+-  ....||.+..++-|+.- +|-+  +-||+.+.+|+..++.+.+.
T Consensus       261 ~~~~~~~~r~~~~~~~n~~~lv~~~~~~~~f~~~l~p~~~~~-~~~~~~pe~r~~~~~a~~~l~~~~~~  328 (986)
T 2iw3_A          261 NERETGIKRKSAVIIDNMCKLVEDPQVIAPFLGKLLPGLKSN-FATIADPEAREVTLRALKTLRRVGNV  328 (986)
T ss_dssp             TSSSHHHHHHHHHHHHHHHTTCCCHHHHHHHHTTTHHHHHHH-TTTCCSHHHHHHHHHHHHHHHHHHTC
T ss_pred             ccCcchhheeeEEEEcchhhhcCCHHHHhhhhhhhhhHHHHH-hhccCCHHHHHHHHHHHHHHHHhhcc
Confidence            44444443344445555555452  36788888888887742 3555  88999999999999999877

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1

Probab=98.41  E-value=1.3e-05  Score=89.67  Aligned_cols=240  Identities=12%  Similarity=0.068  Sum_probs=159.7

Q ss_pred             CCC--hHHHHHHHHHHHHHhCCcCcHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccchhhHHHHHHHHHhhccC
Q 046417           32 DRD--TLPVATAELESIARTLTQDSFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPHLSKMISTVSCRLRD  109 (595)
Q Consensus        32 DrD--T~r~A~~~LD~lA~~L~~~~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~PhLpkIL~~IvrrLkD  109 (595)
                      |.+  -++.|+.+|-.+.... |+.++.|++.|.+...+.++.++-+++.+|+.+++..++. ..++.+++|.+++.|++
T Consensus       153 ~~~~~VRk~A~~al~~l~~~~-p~~v~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~-~~~~~~~v~~l~~~L~~  230 (618)
T 1w63_A          153 TSNSYLRKKAALCAVHVIRKV-PELMEMFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDM-LAHFRKLVPQLVRILKN  230 (618)
T ss_dssp             SCCHHHHHHHHHHHHHHHHHC-GGGGGGGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHH-HHHHHTTHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHC-hHHHHHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHH-HHHHHHHHHHHHHHHHH
Confidence            445  5688999999988865 5678888999998888888999999999999998766553 33445566666665553


Q ss_pred             ---------------CChhHHHHHHHHHHHhhhhhcCCcchhccHHHHHHHhh--cC----ChhHHHHHHHHHHHHHhcC
Q 046417          110 ---------------PDSSVRSACVAATTAMSLNITKPSFSVLSKPLIELILV--EQ----DVNSQVGGAMCLAAAIDAA  168 (595)
Q Consensus       110 ---------------~ds~VR~Ac~~aLg~LA~~l~~~~~~~~l~PLi~aLl~--d~----nk~VQ~~AA~cLaaviE~a  168 (595)
                                     +++-.+-....+|+.++..-  +....-+.+++..++.  +.    +..|.-.|+.|+..   -.
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~--~~~~~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~---l~  305 (618)
T 1w63_A          231 LIMSGYSPEHDVSGISDPFLQVRILRLLRILGRND--DDSSEAMNDILAQVATNTETSKNVGNAILYETVLTIMD---IK  305 (618)
T ss_dssp             HHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTC--HHHHHTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHH---SC
T ss_pred             HHcCCCCccccccCCCCChHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHh---cC
Confidence                           57778888888888887532  1111122233333322  12    12344444444433   22


Q ss_pred             CCchHHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHhhcccCcCcHHhHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Q 046417          169 PNPEVEQLRKLLPRLGKAVRIEGFKAKAAVLGVIGSVVRVGGARSKGVLDWLVPCLVEFLCCDDWATRKAAAEVLGKVAV  248 (595)
Q Consensus       169 ~d~~~~~L~~Ll~rL~klL~~~~~kaK~alLsAIgSlA~a~g~~~~~yl~~lmp~L~e~L~~dDW~~RkaAaEaLgsIA~  248 (595)
                      ..  .......+..|.++|.++...+|-+++.+++.++......    +....+.+..++.++|..+|+.|+|+|+.++.
T Consensus       306 ~~--~~l~~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p~~----~~~~~~~i~~~l~d~d~~Ir~~alelL~~l~~  379 (618)
T 1w63_A          306 SE--SGLRVLAINILGRFLLNNDKNIRYVALTSLLKTVQTDHNA----VQRHRSTIVDCLKDLDVSIKRRAMELSFALVN  379 (618)
T ss_dssp             CC--HHHHHHHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHHHHH----HGGGHHHHHHGGGSSCHHHHHHHHHHHHHHCC
T ss_pred             CC--HHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHhhCHHH----HHHHHHHHHHHccCCChhHHHHHHHHHHHHcc
Confidence            22  1233456778888898888889999999999999765443    33445567777889999999999999999976


Q ss_pred             HhHHhHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHhHhc
Q 046417          249 FDKDLATEYKRSCLAALETRRFDKVKIVRETMNRSLEMWKEV  290 (595)
Q Consensus       249 avge~f~py~~~~I~~Le~crfDKVK~VRda~~~aL~~~K~i  290 (595)
                      ..  .+......++..+...  |  ..+|..+..+|..+-..
T Consensus       380 ~~--nv~~iv~eL~~~l~~~--d--~e~r~~~v~~I~~la~k  415 (618)
T 1w63_A          380 GN--NIRGMMKELLYFLDSC--E--PEFKADCASGIFLAAEK  415 (618)
T ss_dssp             SS--STHHHHHHHHHHHHHC--C--HHHHHHHHHHHHHHHHS
T ss_pred             cc--cHHHHHHHHHHHHHhC--C--HHHHHHHHHHHHHHHHH
Confidence            32  2333445556666643  2  46777777777777654

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A

Probab=98.35  E-value=5.8e-06  Score=92.84  Aligned_cols=178  Identities=11%  Similarity=0.157  Sum_probs=133.8

Q ss_pred             HHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccchhhHHHHHHHHHhhccCCChhHHHHHHHHHHHhhhhhcCCcc
Q 046417           55 FSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPHLSKMISTVSCRLRDPDSSVRSACVAATTAMSLNITKPSF  134 (595)
Q Consensus        55 lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~PhLpkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~~~~~  134 (595)
                      +..++.++    ++.+...||-+.+.+..+++.++|.+    --++..+.+-|+|+++.||..|..+||.+...    ..
T Consensus        76 ~~~vvkl~----~s~~~~~Krl~YL~l~~~~~~~~e~~----~L~iN~l~kDl~~~n~~ir~lALr~L~~i~~~----e~  143 (621)
T 2vgl_A           76 HMEAVNLL----SSNRYTEKQIGYLFISVLVNSNSELI----RLINNAIKNDLASRNPTFMGLALHCIANVGSR----EM  143 (621)
T ss_dssp             HHHHHHGG----GCSCHHHHHHHHHHHHHSCCCCHHHH----HHHHHHHHHHHHSCCHHHHHHHHHHHHHHCCH----HH
T ss_pred             HHHHHHHh----cCCCHHHHHHHHHHHHHHccCCcHHH----HHHHHHHHHhcCCCCHHHHHHHHHHhhccCCH----HH
Confidence            44444444    45678999999999999999887643    44577889999999999999999999998641    11


Q ss_pred             h-hccHHHHHHHh-hcCChhHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHhhccc
Q 046417          135 S-VLSKPLIELIL-VEQDVNSQVGGAMCLAAAIDAAPNPEVEQLRKLLPRLGKAVRIEGFKAKAAVLGVIGSVVRVGGAR  212 (595)
Q Consensus       135 ~-~~l~PLi~aLl-~d~nk~VQ~~AA~cLaaviE~a~d~~~~~L~~Ll~rL~klL~~~~~kaK~alLsAIgSlA~a~g~~  212 (595)
                      . .+++++...|. .+.+++|...|++|+.++.+-.++.. ++ +.+++++.++|++++..++.+++.++..++......
T Consensus       144 ~~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~~-~~-~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~  221 (621)
T 2vgl_A          144 AEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDLV-PM-GDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPEE  221 (621)
T ss_dssp             HHHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGGC-CC-CSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCHHH
T ss_pred             HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhhc-Cc-hhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhChHH
Confidence            1 25555555553 58899999999999999998654422 21 368888999999889899999999999888766555


Q ss_pred             CcCcHHhHHHHHHHhccC--------------CCHHHHHHHHHHHHHHH
Q 046417          213 SKGVLDWLVPCLVEFLCC--------------DDWATRKAAAEVLGKVA  247 (595)
Q Consensus       213 ~~~yl~~lmp~L~e~L~~--------------dDW~~RkaAaEaLgsIA  247 (595)
                      +.++++.++..|..++..              +.| .+...++.|+.++
T Consensus       222 ~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w-~qi~il~ll~~~~  269 (621)
T 2vgl_A          222 FKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPW-LSVKLLRLLQCYP  269 (621)
T ss_dssp             HTTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHH-HHHHHHHHGGGSS
T ss_pred             HHHHHHHHHHHHHHHHhCCCCCccchhhcCCCCch-HHHHHHHHHHHhC
Confidence            677888888878777642              345 4566667776665

>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}

Probab=98.34  E-value=3.1e-05  Score=78.85  Aligned_cols=178  Identities=16%  Similarity=0.102  Sum_probs=142.0

Q ss_pred             ChHHHHHHHHHHHHHHHHccccchhhHHHHHHHHHhhccCCChhHHHHHHHHHHHhhhhhcCCc--c-----hhccHHHH
Q 046417           70 KSPVRKQCVNLLTLLSRSHGDSLSPHLSKMISTVSCRLRDPDSSVRSACVAATTAMSLNITKPS--F-----SVLSKPLI  142 (595)
Q Consensus        70 kp~vRKaaI~lLG~lAEg~gd~I~PhLpkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~~~~--~-----~~~l~PLi  142 (595)
                      ++..|-+++-.|-...+..++.+...+.-++..+.-++.|.++.|-..|.+.|..+...+.+..  +     ..+++.|+
T Consensus        59 d~k~~~~ale~L~~~l~~~~~~~~~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea~~~lP~Lv  138 (266)
T 2of3_A           59 DFKQHLAALDSLVRLADTSPRSLLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQEEVSAFVPYLL  138 (266)
T ss_dssp             CHHHHHHHHHHHHHHHHHCHHHHHHTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHH
Confidence            6888888888887777777788888888889988889999999999999999998876664321  1     13777788


Q ss_pred             HHHhhcCChhHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHhhcccCcCcHHhHH-
Q 046417          143 ELILVEQDVNSQVGGAMCLAAAIDAAPNPEVEQLRKLLPRLGKAVRIEGFKAKAAVLGVIGSVVRVGGARSKGVLDWLV-  221 (595)
Q Consensus       143 ~aLl~d~nk~VQ~~AA~cLaaviE~a~d~~~~~L~~Ll~rL~klL~~~~~kaK~alLsAIgSlA~a~g~~~~~yl~~lm-  221 (595)
                      +-| ||+...|-..+-.+|..+.+-.+      ..++.+.+...+++.+.++|...++.++++...-|...    ...+ 
T Consensus       139 eKl-Gd~k~~vR~~~r~il~~l~~v~~------~~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~~----~~~l~  207 (266)
T 2of3_A          139 LKT-GEAKDNMRTSVRDIVNVLSDVVG------PLKMTPMLLDALKSKNARQRSECLLVIEYYITNAGISP----LKSLS  207 (266)
T ss_dssp             HGG-GCSSHHHHHHHHHHHHHHHHHHC------HHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSGG----GGGGC
T ss_pred             HHh-CCChHHHHHHHHHHHHHHHHHCC------HHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCCc----ccccc
Confidence            888 88887787777777766654321      23577778889999999999999999999998766552    3456 


Q ss_pred             --HHHHHhccCCCHHHHHHHHHHHHHHHHHhHHhHHHHH
Q 046417          222 --PCLVEFLCCDDWATRKAAAEVLGKVAVFDKDLATEYK  258 (595)
Q Consensus       222 --p~L~e~L~~dDW~~RkaAaEaLgsIA~avge~f~py~  258 (595)
                        |.+..++.|.|-.+|.+|+.||..+=..+|+.+-.|.
T Consensus       208 ~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~Gd~v~k~l  246 (266)
T 2of3_A          208 VEKTVAPFVGDKDVNVRNAAINVLVACFKFEGDQMWKAA  246 (266)
T ss_dssp             HHHHHGGGGGCSSHHHHHHHHHHHHHHHHHHTTHHHHHH
T ss_pred             chHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence              9999999999999999999999999888998666564

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16

Probab=98.29  E-value=1.2e-07  Score=84.42  Aligned_cols=123  Identities=15%  Similarity=0.121  Sum_probs=88.1

Q ss_pred             hHHHHHHHHHhhccCCChhHHHHHHHHHHHhhhhhcCCcchhccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCCCchHH
Q 046417           95 HLSKMISTVSCRLRDPDSSVRSACVAATTAMSLNITKPSFSVLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNPEVE  174 (595)
Q Consensus        95 hLpkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~~~~~~~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d~~~~  174 (595)
                      +.+.-++.++..|+|+++.||.+++++|+.+...        -+.+|+..| .+.++.|+..|+.+|..+.+        
T Consensus         9 ~~~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~~--------~~~~L~~~L-~d~~~~vR~~A~~aL~~~~~--------   71 (131)
T 1te4_A            9 HHSSGLVPRGSHMADENKWVRRDVSTALSRMGDE--------AFEPLLESL-SNEDWRIRGAAAWIIGNFQD--------   71 (131)
T ss_dssp             ------------CCSSCCCSSSSCCSSTTSCSST--------THHHHHHGG-GCSCHHHHHHHHHHHGGGCS--------
T ss_pred             cccccHHHHHHHhcCCCHHHHHHHHHHHHHhCch--------HHHHHHHHH-cCCCHHHHHHHHHHHHhcCC--------
Confidence            3445567888999999999999999998876542        146677666 78899999999988876542        


Q ss_pred             HHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHhhcccCcCcHHhHHHHHHHhccCCCHHHHHHHHHHHHHH
Q 046417          175 QLRKLLPRLGKAVRIEGFKAKAAVLGVIGSVVRVGGARSKGVLDWLVPCLVEFLCCDDWATRKAAAEVLGKV  246 (595)
Q Consensus       175 ~L~~Ll~rL~klL~~~~~kaK~alLsAIgSlA~a~g~~~~~yl~~lmp~L~e~L~~dDW~~RkaAaEaLgsI  246 (595)
                        +..++.|.++|++++..+|..++.+++.+.          -+..+|.|.+.+.++++.+|..|+.+|+.|
T Consensus        72 --~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~----------~~~a~~~L~~~l~d~~~~vr~~A~~aL~~i  131 (131)
T 1te4_A           72 --ERAVEPLIKLLEDDSGFVRSGAARSLEQIG----------GERVRAAMEKLAETGTGFARKVAVNYLETH  131 (131)
T ss_dssp             --HHHHHHHHHHHHHCCTHHHHHHHHHHHHHC----------SHHHHHHHHHHTTSCCTHHHHHHHHHGGGC
T ss_pred             --HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------cHHHHHHHHHHHhCCCHHHHHHHHHHHHhC
Confidence              234677777888888899998888888653          145788999999999999999999998753

>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B

Probab=98.17  E-value=1.1e-05  Score=94.94  Aligned_cols=187  Identities=7%  Similarity=-0.044  Sum_probs=132.5

Q ss_pred             HHHHHHHHHHHHHHHHccccchhhHHHHHHHHHhhcc--CCChhHHHHHHHHHHHhhhhhcCCcchhccHHHHHHHhh--
Q 046417           72 PVRKQCVNLLTLLSRSHGDSLSPHLSKMISTVSCRLR--DPDSSVRSACVAATTAMSLNITKPSFSVLSKPLIELILV--  147 (595)
Q Consensus        72 ~vRKaaI~lLG~lAEg~gd~I~PhLpkIL~~IvrrLk--D~ds~VR~Ac~~aLg~LA~~l~~~~~~~~l~PLi~aLl~--  147 (595)
                      ..|+++-.+|..++...++.+.+++   ++.+.+.+.  .++...++|+++++|.+++.+.......++..++..|+.  
T Consensus       428 ~~~~~~~~~L~~l~~~~~~~~l~~v---~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~  504 (1049)
T 3m1i_C          428 QLYKSEREVLVYLTHLNVIDTEEIM---ISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLT  504 (1049)
T ss_dssp             HHHHHHHHHHHHHHHHCHHHHHHHH---HHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHccCHHHHHHHH---HHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHH
Confidence            4577788888888877777655544   444444444  356788999999999999766422111245556665543  


Q ss_pred             c------CChhHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHhhcccC--------
Q 046417          148 E------QDVNSQVGGAMCLAAAIDAAPNPEVEQLRKLLPRLGKAVRIEGFKAKAAVLGVIGSVVRVGGARS--------  213 (595)
Q Consensus       148 d------~nk~VQ~~AA~cLaaviE~a~d~~~~~L~~Ll~rL~klL~~~~~kaK~alLsAIgSlA~a~g~~~--------  213 (595)
                      +      +.+.++..++.++..+.+.... ...+++.+++.|+..|.+++..++.++..++..++...+..+        
T Consensus       505 ~~~~~~~~~~~v~~~~~~~lgry~~~~~~-~~~~l~~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~~~l~~~~~~~~  583 (1049)
T 3m1i_C          505 VKKRGKDNKAVVASDIMYVVGQYPRFLKA-HWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRES  583 (1049)
T ss_dssp             TSSCSHHHHHHHHHHHHHHHHHCHHHHHH-CHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCS
T ss_pred             hhhccccchHHHHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhcccCCCC
Confidence            1      2344555677777766654211 136999999999999998889999999999999998655433        


Q ss_pred             cCcHHhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhH--HhHHHHHHHHH
Q 046417          214 KGVLDWLVPCLVEFLCCDDWATRKAAAEVLGKVAVFDK--DLATEYKRSCL  262 (595)
Q Consensus       214 ~~yl~~lmp~L~e~L~~dDW~~RkaAaEaLgsIA~avg--e~f~py~~~~I  262 (595)
                      .||++.++..|...+..-+-..+....|+++.|+.+.+  +...+|...++
T Consensus       584 ~p~~~~il~~l~~~~~~~~~~~~~~~~eai~~ii~~~~~~~~~~~~~~~l~  634 (1049)
T 3m1i_C          584 EPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEERSVAERNRLLSDLM  634 (1049)
T ss_dssp             SCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHT
T ss_pred             CcHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence            39999999999988877666667889999999998876  35666655433

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16

Probab=98.17  E-value=3.3e-07  Score=81.62  Aligned_cols=119  Identities=16%  Similarity=0.129  Sum_probs=85.3

Q ss_pred             HHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccchhhHHHHHHHHHhhccCCChhHHHHHHHHHHHhhhhhcCCcchh
Q 046417           57 SFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPHLSKMISTVSCRLRDPDSSVRSACVAATTAMSLNITKPSFSV  136 (595)
Q Consensus        57 ~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~PhLpkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~~~~~~~  136 (595)
                      ..++.|.....++++.+|..++.+||.+.    +.      . ++.+++.|+|+++.||..++++||.+...       .
T Consensus        12 ~~~~~l~~~L~~~~~~vR~~A~~~L~~~~----~~------~-~~~L~~~L~d~~~~vR~~A~~aL~~~~~~-------~   73 (131)
T 1te4_A           12 SGLVPRGSHMADENKWVRRDVSTALSRMG----DE------A-FEPLLESLSNEDWRIRGAAAWIIGNFQDE-------R   73 (131)
T ss_dssp             ---------CCSSCCCSSSSCCSSTTSCS----ST------T-HHHHHHGGGCSCHHHHHHHHHHHGGGCSH-------H
T ss_pred             ccHHHHHHHhcCCCHHHHHHHHHHHHHhC----ch------H-HHHHHHHHcCCCHHHHHHHHHHHHhcCCH-------H
Confidence            33444444445567899999999987553    21      1 36788899999999999999999998742       2


Q ss_pred             ccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhccCchhHHHHHHHHHHH
Q 046417          137 LSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNPEVEQLRKLLPRLGKAVRIEGFKAKAAVLGVIGS  204 (595)
Q Consensus       137 ~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d~~~~~L~~Ll~rL~klL~~~~~kaK~alLsAIgS  204 (595)
                      .+.+|+..| .+.+..|...|+.+|..+.+          +..++.|.++|++++..++..++.+++.
T Consensus        74 a~~~L~~~L-~d~~~~VR~~A~~aL~~~~~----------~~a~~~L~~~l~d~~~~vr~~A~~aL~~  130 (131)
T 1te4_A           74 AVEPLIKLL-EDDSGFVRSGAARSLEQIGG----------ERVRAAMEKLAETGTGFARKVAVNYLET  130 (131)
T ss_dssp             HHHHHHHHH-HHCCTHHHHHHHHHHHHHCS----------HHHHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred             HHHHHHHHH-cCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence            467788777 78899999999999988752          2456777888888888888887777653

>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}

Probab=98.12  E-value=4e-05  Score=76.66  Aligned_cols=180  Identities=14%  Similarity=0.110  Sum_probs=128.7

Q ss_pred             hhcCCCC--hHHHHHHHHHHHHHhCCcCc--------HHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccc------c
Q 046417           28 NKLADRD--TLPVATAELESIARTLTQDS--------FSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGD------S   91 (595)
Q Consensus        28 ~KL~DrD--T~r~A~~~LD~lA~~L~~~~--------lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd------~   91 (595)
                      .+|.+..  .+.-|+++|..+....+.+.        +..++..+.....+.+..+...++.++..+++.++.      .
T Consensus        16 e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~~~   95 (278)
T 4ffb_C           16 ERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKNAH   95 (278)
T ss_dssp             HHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCHHH
T ss_pred             HhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhcccch
Confidence            4566666  77778888887776543211        112223333334456789999999999999998753      2


Q ss_pred             chhhHHHHHHHHHhh-ccCCChhHHHHHHHHHHHhhhhhcCCcchhccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCC-
Q 046417           92 LSPHLSKMISTVSCR-LRDPDSSVRSACVAATTAMSLNITKPSFSVLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAP-  169 (595)
Q Consensus        92 I~PhLpkIL~~Ivrr-LkD~ds~VR~Ac~~aLg~LA~~l~~~~~~~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~-  169 (595)
                      ..++...++|.|+.+ |.|+.+.+|.++..++-.++....  +...++.-++.+| ...++.++.++..+|..+++.-+ 
T Consensus        96 ~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~--~~~~~~e~l~~~l-~~Knpkv~~~~l~~l~~~l~~fg~  172 (278)
T 4ffb_C           96 NITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDT--SITQSVELVIPFF-EKKLPKLIAAAANCVYELMAAFGL  172 (278)
T ss_dssp             HHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSS--SSHHHHHHHGGGG-GCSCHHHHHHHHHHHHHHHHHHTT
T ss_pred             hHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcC--cHHHHHHHHHHHH-hccCHHHHHHHHHHHHHHHHHhCC
Confidence            356678889988866 899999999999999888876542  1112334444444 67889999999999999998732 


Q ss_pred             -C-chHHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHhhc
Q 046417          170 -N-PEVEQLRKLLPRLGKAVRIEGFKAKAAVLGVIGSVVRVGG  210 (595)
Q Consensus       170 -d-~~~~~L~~Ll~rL~klL~~~~~kaK~alLsAIgSlA~a~g  210 (595)
                       . .+.+.+..+++.+.++|++.+-.+|.+++.+++.+-...|
T Consensus       173 ~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~~G  215 (278)
T 4ffb_C          173 TNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKVTG  215 (278)
T ss_dssp             TTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC--
T ss_pred             CcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhC
Confidence             2 2346788899999999999999999999999998876444

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A

Probab=98.07  E-value=3.2e-05  Score=81.24  Aligned_cols=211  Identities=12%  Similarity=0.057  Sum_probs=138.7

Q ss_pred             hHHHHHHHHHHHHHhCC--------cCc-HHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccchhhH--HHHHHHH
Q 046417           35 TLPVATAELESIARTLT--------QDS-FSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPHL--SKMISTV  103 (595)
Q Consensus        35 T~r~A~~~LD~lA~~L~--------~~~-lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~PhL--pkIL~~I  103 (595)
                      .++.|+..|-.|+..=+        ... ||.|+..|.    ++++.+++.++.+|+.|+.+..+.....+  ...||.+
T Consensus       100 ~q~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~----s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~L  175 (354)
T 3nmw_A          100 LRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLK----SESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKAL  175 (354)
T ss_dssp             HHHHHHHHHHHHTSSCHHHHHHHHHCHHHHHHHHHGGG----CSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHcCCcHHHHHHHHC----CCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHH
Confidence            35566666766654321        112 666666664    46789999999999999875221111111  1357778


Q ss_pred             Hhh-ccCCChhHHHHHHHHHHHhhhhhcC--Ccch---hccHHHHHHHhhcCCh---hHHHHHHHHHHHHHhc-C-CCch
Q 046417          104 SCR-LRDPDSSVRSACVAATTAMSLNITK--PSFS---VLSKPLIELILVEQDV---NSQVGGAMCLAAAIDA-A-PNPE  172 (595)
Q Consensus       104 vrr-LkD~ds~VR~Ac~~aLg~LA~~l~~--~~~~---~~l~PLi~aLl~d~nk---~VQ~~AA~cLaaviE~-a-~d~~  172 (595)
                      ++. ++..+..++..++.+|..|+.+..+  ....   -.+++|+..|....+.   .++..|+.||..+... + .+..
T Consensus       176 v~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~  255 (354)
T 3nmw_A          176 MECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDH  255 (354)
T ss_dssp             HHHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHhcCCCHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHH
Confidence            886 4567888999999999999874311  1111   1677788887322222   4788888888887642 1 1111


Q ss_pred             HHH-HH-HHHHHHHHhhccCchhHHHHHHHHHHHHHHhhcccCcCcH--HhHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Q 046417          173 VEQ-LR-KLLPRLGKAVRIEGFKAKAAVLGVIGSVVRVGGARSKGVL--DWLVPCLVEFLCCDDWATRKAAAEVLGKVAV  248 (595)
Q Consensus       173 ~~~-L~-~Ll~rL~klL~~~~~kaK~alLsAIgSlA~a~g~~~~~yl--~~lmp~L~e~L~~dDW~~RkaAaEaLgsIA~  248 (595)
                      ... .+ ..++.|+.+|++....++..++.+|+.++... .....++  ...+|.|.+.|.+.+-..|+.|+.+|..|+.
T Consensus       256 ~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~-~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~  334 (354)
T 3nmw_A          256 RQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARN-PKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMA  334 (354)
T ss_dssp             HHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSC-HHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCCC-HHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHc
Confidence            122 22 37899999999999988888888888776211 1111222  3468999999999999999999999999987


Q ss_pred             Hh
Q 046417          249 FD  250 (595)
Q Consensus       249 av  250 (595)
                      .-
T Consensus       335 ~~  336 (354)
T 3nmw_A          335 NR  336 (354)
T ss_dssp             TC
T ss_pred             CC
Confidence            53

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}

Probab=97.96  E-value=8.6e-05  Score=80.80  Aligned_cols=209  Identities=11%  Similarity=0.047  Sum_probs=139.8

Q ss_pred             hHHHHHHHHHHHHHhCC--------cCc-HHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccchhhH--HHHHHHH
Q 046417           35 TLPVATAELESIARTLT--------QDS-FSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPHL--SKMISTV  103 (595)
Q Consensus        35 T~r~A~~~LD~lA~~L~--------~~~-lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~PhL--pkIL~~I  103 (595)
                      .++-|+..|-.|+..=+        ... ||.|+..|.    +.++.+++.++.+|+.|+.+..+.....+  ...|+.+
T Consensus       216 l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~----s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~L  291 (458)
T 3nmz_A          216 LRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLK----SESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKAL  291 (458)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGGG----CSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHH
T ss_pred             HHHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHHh----CCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHH
Confidence            36678888888875422        112 555555554    46789999999999999864211111111  2457788


Q ss_pred             Hhhc-cCCChhHHHHHHHHHHHhhhhhcC--Ccch---hccHHHHHHHhhcCCh---hHHHHHHHHHHHHHhc-C-CCch
Q 046417          104 SCRL-RDPDSSVRSACVAATTAMSLNITK--PSFS---VLSKPLIELILVEQDV---NSQVGGAMCLAAAIDA-A-PNPE  172 (595)
Q Consensus       104 vrrL-kD~ds~VR~Ac~~aLg~LA~~l~~--~~~~---~~l~PLi~aLl~d~nk---~VQ~~AA~cLaaviE~-a-~d~~  172 (595)
                      ++.| +..+..++..++.+|+.|+.+..+  ....   -.+++|+..|....+.   .++..|+.||..+.-. + .+..
T Consensus       292 V~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~  371 (458)
T 3nmz_A          292 MECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDH  371 (458)
T ss_dssp             HHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHH
Confidence            8864 556788999999999999874311  1111   1677788877432222   3788888888887642 1 1111


Q ss_pred             HH-HHH-HHHHHHHHhhccCchhHHHHHHHHHHHHHHhhcccCcCcH--HhHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Q 046417          173 VE-QLR-KLLPRLGKAVRIEGFKAKAAVLGVIGSVVRVGGARSKGVL--DWLVPCLVEFLCCDDWATRKAAAEVLGKVAV  248 (595)
Q Consensus       173 ~~-~L~-~Ll~rL~klL~~~~~kaK~alLsAIgSlA~a~g~~~~~yl--~~lmp~L~e~L~~dDW~~RkaAaEaLgsIA~  248 (595)
                      .. +.+ ..+|.|+.+|++....++..++.+|+.++..... ...++  ...+|.|.+.|.+.+...|+.|+.+|..|+.
T Consensus       372 ~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~~~~-~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~  450 (458)
T 3nmz_A          372 RQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPK-DQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMA  450 (458)
T ss_dssp             HHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSSCHH-HHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHcCCHH-HHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHc
Confidence            22 222 3789999999999999998888888887631111 11222  3468999999999999999999999999875

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24

Probab=97.96  E-value=0.00015  Score=77.84  Aligned_cols=221  Identities=11%  Similarity=0.111  Sum_probs=139.4

Q ss_pred             HHHhhhcCCCChHHHHHHHHHHHHHhCC-------cCcHHHHHHhhhh--------cCC----CCChHHHHHHHHHHHHH
Q 046417           24 ITCLNKLADRDTLPVATAELESIARTLT-------QDSFSSFLNCLQT--------TDS----SSKSPVRKQCVNLLTLL   84 (595)
Q Consensus        24 l~~L~KL~DrDT~r~A~~~LD~lA~~L~-------~~~lp~fL~~L~d--------~~s----s~kp~vRKaaI~lLG~l   84 (595)
                      ++.|.+=+|.+.+..|+..|-.|+.. +       ...+|+++.+|..        ...    ..++.+.+.++.+|..+
T Consensus        92 v~lL~~~~~~~~~~~a~~aL~nLa~~-~~~~~~i~~g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~a~~aL~nL  170 (457)
T 1xm9_A           92 VSLLRRTGNAEIQKQLTGLLWNLSST-DELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNL  170 (457)
T ss_dssp             HHHHTTCCCHHHHHHHHHHHHHHHTS-SSTHHHHHHHHHHHHHHHTTHHHHTCC---------CCCHHHHHHHHHHHHHH
T ss_pred             HHHHhhCCCHHHHHHHHHHHHHHhcC-HHhHHHHHhccHHHHHHHHhccccccccCccchhcccccHHHHHHHHHHHHHH
Confidence            33443333455777788888888875 3       1237788888832        100    13456777999999999


Q ss_pred             HHHccccchhhHH---HHHHHHHhhccC------CChhHHHHHHHHHHHhhhhhc-------------------------
Q 046417           85 SRSHGDSLSPHLS---KMISTVSCRLRD------PDSSVRSACVAATTAMSLNIT-------------------------  130 (595)
Q Consensus        85 AEg~gd~I~PhLp---kIL~~IvrrLkD------~ds~VR~Ac~~aLg~LA~~l~-------------------------  130 (595)
                      +.. ++. ...+-   .+++.++..|++      ++..+.+.|+.+|..++..+.                         
T Consensus       171 s~~-~~~-~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (457)
T 1xm9_A          171 SSA-DAG-RQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTG  248 (457)
T ss_dssp             TTS-HHH-HHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC-----------
T ss_pred             ccC-HHH-HHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhcccccccccccccccc
Confidence            875 332 22221   456666666653      555666677767776652110                         


Q ss_pred             -----------------------CC-c---ch--hccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCCCchH----HHH-
Q 046417          131 -----------------------KP-S---FS--VLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNPEV----EQL-  176 (595)
Q Consensus       131 -----------------------~~-~---~~--~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d~~~----~~L-  176 (595)
                                             .. .   +.  ..+++|+..|....++.+++.||.||..++-+-.....    ..+ 
T Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~~~~~~~v~  328 (457)
T 1xm9_A          249 CFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGL  328 (457)
T ss_dssp             -----------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHT
T ss_pred             hhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcchHHHHHHHHH
Confidence                                   00 0   00  15677888775566789999999999999865333111    122 


Q ss_pred             -HHHHHHHHHhhccCchhHHHHHHHHHHHHHHhhcccCcCcHHhHHHHHHHhccCCCH------HHHHHHHHHHHHHHH
Q 046417          177 -RKLLPRLGKAVRIEGFKAKAAVLGVIGSVVRVGGARSKGVLDWLVPCLVEFLCCDDW------ATRKAAAEVLGKVAV  248 (595)
Q Consensus       177 -~~Ll~rL~klL~~~~~kaK~alLsAIgSlA~a~g~~~~~yl~~lmp~L~e~L~~dDW------~~RkaAaEaLgsIA~  248 (595)
                       ...+|.|+++|.++...++..+..+|+.++.-.... ...-...||.|.+.|...+.      .+..+++.+|+.|..
T Consensus       329 ~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~~~~-~~i~~~~i~~Lv~lL~~~~~~~~~~~~v~~~~l~~l~ni~~  406 (457)
T 1xm9_A          329 KEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLH-RVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMA  406 (457)
T ss_dssp             TSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGGGH-HHHHHHTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHT
T ss_pred             HcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCHHHH-HHHHHhhhHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHh
Confidence             246799999999999999988889999887522111 11125689999999986542      456677777777754

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A

Probab=97.89  E-value=0.00062  Score=76.27  Aligned_cols=250  Identities=14%  Similarity=0.104  Sum_probs=153.4

Q ss_pred             hHHHHHHHHHHHHHhCC------cCcHHHHHHhhhhc--------------CCCCChHHHHHHHHHHHHHHHHcc---cc
Q 046417           35 TLPVATAELESIARTLT------QDSFSSFLNCLQTT--------------DSSSKSPVRKQCVNLLTLLSRSHG---DS   91 (595)
Q Consensus        35 T~r~A~~~LD~lA~~L~------~~~lp~fL~~L~d~--------------~ss~kp~vRKaaI~lLG~lAEg~g---d~   91 (595)
                      .++.|+..|-.|+..=.      ...|++++..|...              ....++.+++.+..+|..|+....   ..
T Consensus       150 ~~e~aa~aL~nLS~~~~~k~~I~~~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~  229 (584)
T 3l6x_A          150 LTEVITGTLWNLSSHDSIKMEIVDHALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRK  229 (584)
T ss_dssp             HHHHHHHHHHHHTTSGGGHHHHHHHTHHHHHHHTHHHHHCCC----------CCCCHHHHHHHHHHHHHHTSSCHHHHHH
T ss_pred             HHHHHHHHHHHHhCCchhhHHHHhccHHHHHHHHhcccccccccccccccccccccHHHHHHHHHHHHHHhcCCHHHHHH
Confidence            45666767766665211      12367777765210              122356899999999999986543   22


Q ss_pred             chhhHHHHHHHHHhhcc------CCChhHHHHHHHHHHHhhhhhcC----------------------Cc-ch------h
Q 046417           92 LSPHLSKMISTVSCRLR------DPDSSVRSACVAATTAMSLNITK----------------------PS-FS------V  136 (595)
Q Consensus        92 I~PhLpkIL~~IvrrLk------D~ds~VR~Ac~~aLg~LA~~l~~----------------------~~-~~------~  136 (595)
                      |..+ .-+++.++..|+      +++..+.+-|+++|..|+..+..                      .+ .+      .
T Consensus       230 i~~~-~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~  308 (584)
T 3l6x_A          230 LREC-DGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPE  308 (584)
T ss_dssp             HHHS-TTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC--------------CCCCGGGGGGSHH
T ss_pred             HHHc-CCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhhhhcccccccccccCchhHHHHhccc
Confidence            2211 223344444443      45666788889999888855310                      00 01      1


Q ss_pred             ccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCCCc---hHHHH--HHHHHHHHHhhccCchhHHHHHHHHHHHHHHhhcc
Q 046417          137 LSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNP---EVEQL--RKLLPRLGKAVRIEGFKAKAAVLGVIGSVVRVGGA  211 (595)
Q Consensus       137 ~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d~---~~~~L--~~Ll~rL~klL~~~~~kaK~alLsAIgSlA~a~g~  211 (595)
                      .+++|+..|-...++.+|+.|+.||..++-+-...   ....+  ...+|.|.++|.++.-.++..+..+|+.++.-...
T Consensus       309 ~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~~~~  388 (584)
T 3l6x_A          309 VVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVDARN  388 (584)
T ss_dssp             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCSC
T ss_pred             HHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhCChhH
Confidence            35667777744568899999999999998642111   11133  35689999999999999999999999988853321


Q ss_pred             cCcCcHHhHHHHHHHhccCC--------CHHHHHHHHHHHHHHHHHhHH---hHHH--HHHHHHHHHHhccCCchHHHHH
Q 046417          212 RSKGVLDWLVPCLVEFLCCD--------DWATRKAAAEVLGKVAVFDKD---LATE--YKRSCLAALETRRFDKVKIVRE  278 (595)
Q Consensus       212 ~~~~yl~~lmp~L~e~L~~d--------DW~~RkaAaEaLgsIA~avge---~f~p--y~~~~I~~Le~crfDKVK~VRd  278 (595)
                      . ...-...+|.|++.|.+.        .-.+..+|+-+|+.|+..-.+   .+..  -.+.++.+|.+.. ++-+.++.
T Consensus       389 ~-~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~~~~I~~~g~I~~Lv~LL~s~~-~~~~v~k~  466 (584)
T 3l6x_A          389 K-ELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRETQGIEKLVLINKSGN-RSEKEVRA  466 (584)
T ss_dssp             H-HHHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTCSS-SCHHHHHH
T ss_pred             H-HHHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCC-CChHHHHH
Confidence            1 122356899999999865        356788888888887643222   2221  1345555665432 24566666


Q ss_pred             HHHHHHHHh
Q 046417          279 TMNRSLEMW  287 (595)
Q Consensus       279 a~~~aL~~~  287 (595)
                      +..---.+|
T Consensus       467 Aa~vL~nl~  475 (584)
T 3l6x_A          467 AALVLQTIW  475 (584)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            655444465

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}

Probab=97.86  E-value=0.0022  Score=62.41  Aligned_cols=214  Identities=15%  Similarity=0.175  Sum_probs=146.6

Q ss_pred             HHHHHHhhhcCCCCh---HHHHHHHHHHHHHhCCcCcHHHHHHhhhhcC-CCCChHHHHHHHHHHHHHHHHccccchhhH
Q 046417           21 QRVITCLNKLADRDT---LPVATAELESIARTLTQDSFSSFLNCLQTTD-SSSKSPVRKQCVNLLTLLSRSHGDSLSPHL   96 (595)
Q Consensus        21 ~rvl~~L~KL~DrDT---~r~A~~~LD~lA~~L~~~~lp~fL~~L~d~~-ss~kp~vRKaaI~lLG~lAEg~gd~I~PhL   96 (595)
                      ..++..|-++=|+|-   ++=|+..|-.++..+ |+.+.+++.-|.-.. .+.--+.-.+..++||++|..-++.+.+  
T Consensus        31 ~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~-~el~epl~~kL~vm~~ksEaIpltqeIa~a~G~la~i~Pe~v~~--  107 (253)
T 2db0_A           31 ESVLKKLIELLDDDLWTVVKNAISIIMVIAKTR-EDLYEPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPELVKS--  107 (253)
T ss_dssp             HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTC-GGGHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCHHHHHH--
T ss_pred             HHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHh-HHHHHHHHHHHHHHHhhcccCchHHHHHHHHhHHHHhCHHHHHh--
Confidence            344555556667785   444555566666666 556777776665552 2333467778899999999999997665  


Q ss_pred             HHHHHHHHhhccCCChhHHHHHHHHHHHhhhhhcCCcchh-ccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCCCchHHH
Q 046417           97 SKMISTVSCRLRDPDSSVRSACVAATTAMSLNITKPSFSV-LSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNPEVEQ  175 (595)
Q Consensus        97 pkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~~~~~~~-~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d~~~~~  175 (595)
                        ++|.|..-++=.|+.+|---..+|+.++....  .... .++-++..| .++| ....-+|   -.|+++.++.-..|
T Consensus       108 --vVp~lfanyrigd~kikIn~~yaLeeIaranP--~l~~~v~rdi~sml-tskd-~~Dkl~a---LnFi~alGen~~~y  178 (253)
T 2db0_A          108 --MIPVLFANYRIGDEKTKINVSYALEEIAKANP--MLMASIVRDFMSML-SSKN-REDKLTA---LNFIEAMGENSFKY  178 (253)
T ss_dssp             --HHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCH--HHHHHHHHHHHHHT-SCSS-HHHHHHH---HHHHHTCCTTTHHH
T ss_pred             --hHHHHHHHHhcCCccceecHHHHHHHHHHhCh--HHHHHHHHHHHHHh-cCCC-hHHHHHH---HHHHHHHhccCccc
Confidence              56666667777899999888889999997652  1111 334343333 4555 2222333   36888888777789


Q ss_pred             HHHHHHHHHHhhccCchhHHHHHHHHHHHHHHhhcccCcCcHHhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhH
Q 046417          176 LRKLLPRLGKAVRIEGFKAKAAVLGVIGSVVRVGGARSKGVLDWLVPCLVEFLCCDDWATRKAAAEVLGKVAVFDK  251 (595)
Q Consensus       176 L~~Ll~rL~klL~~~~~kaK~alLsAIgSlA~a~g~~~~~yl~~lmp~L~e~L~~dDW~~RkaAaEaLgsIA~avg  251 (595)
                      +.+.+|||..+|.+.+-.+|+.++.+++-+|....     -+..++-...+-+.|..-.+-+..-+.|+.|+...+
T Consensus       179 v~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~np-----klRkii~~kl~e~~D~S~lv~~~V~egL~rl~l~e~  249 (253)
T 2db0_A          179 VNPFLPRIINLLHDGDEIVRASAVEALVHLATLND-----KLRKVVIKRLEELNDTSSLVNKTVKEGISRLLLLEG  249 (253)
T ss_dssp             HGGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCH-----HHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHHHC--
T ss_pred             cCcchHHHHHHHcCcchhhhHHHHHHHHHHHHcCH-----HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhc
Confidence            99999999999999999999999999988884422     244444444555567667788888999999876543

>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*

Probab=97.84  E-value=0.00031  Score=83.03  Aligned_cols=230  Identities=13%  Similarity=0.017  Sum_probs=150.4

Q ss_pred             hHHHHHHHHHHHHHhCCc---------CcHHHHHHhhhhc----C-CCCChHHHHHHHHHHHHHHHHccccchhhHHHHH
Q 046417           35 TLPVATAELESIARTLTQ---------DSFSSFLNCLQTT----D-SSSKSPVRKQCVNLLTLLSRSHGDSLSPHLSKMI  100 (595)
Q Consensus        35 T~r~A~~~LD~lA~~L~~---------~~lp~fL~~L~d~----~-ss~kp~vRKaaI~lLG~lAEg~gd~I~PhLpkIL  100 (595)
                      ....|+-.|-.+++.+..         +.+|.+++.|...    . ..+.|.+|..++..+|-.++-.... -.||+.+|
T Consensus       459 ~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V~~~~~~~l~rys~~~~~~-~~~l~~~L  537 (980)
T 3ibv_A          459 LIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHPHPLVQLLYMEILVRYASFFDYE-SAAIPALI  537 (980)
T ss_dssp             HHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCCCHHHHHHHHHHHHHTGGGGGTC-CTTHHHHH
T ss_pred             HHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhcC-chhHHHHH
Confidence            355666676677776642         2234444444332    1 2456899999999998888776543 25899999


Q ss_pred             HHHHh--hccCCChhHHHHHHHHHHHhhhhhcCCcchhccHHHHHHHh---h-c--C--C----------------hhHH
Q 046417          101 STVSC--RLRDPDSSVRSACVAATTAMSLNITKPSFSVLSKPLIELIL---V-E--Q--D----------------VNSQ  154 (595)
Q Consensus       101 ~~Ivr--rLkD~ds~VR~Ac~~aLg~LA~~l~~~~~~~~l~PLi~aLl---~-d--~--n----------------k~VQ  154 (595)
                      ++++.  ++.|++..||.+|+.++.+|++.+.. ....++.+++..|.   . .  +  +                ..-|
T Consensus       538 ~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~-~L~~~~~~il~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~q  616 (980)
T 3ibv_A          538 EYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKK-QVVNYTESSLAMLGDLLNISVSPVTDMDAPVPTLNSSIRNSDFNSQ  616 (980)
T ss_dssp             HHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTT-TCSSSHHHHHHHTTGGGCCCCCCCCC--CSSCCHHHHHHTTTHHHH
T ss_pred             HHHhccccccCCChhHHHHHHHHHHHHHHHhhH-HhhhHHHHHHHHHHHhhcCcCCCCCcccccccchhhhcccCCchHH
Confidence            99999  99999999999999999999998743 22246777777762   1 0  1  0                1135


Q ss_pred             HHHHHHHHHHHhcCCCch---HHHHHHHHHH----HHHhhccC----chhHHH-HHHHHHHHHHHhhcc---cCcC---c
Q 046417          155 VGGAMCLAAAIDAAPNPE---VEQLRKLLPR----LGKAVRIE----GFKAKA-AVLGVIGSVVRVGGA---RSKG---V  216 (595)
Q Consensus       155 ~~AA~cLaaviE~a~d~~---~~~L~~Ll~r----L~klL~~~----~~kaK~-alLsAIgSlA~a~g~---~~~~---y  216 (595)
                      ..-.-|+..++...+.+.   ..|++.|++-    +.+++...    .-.++. .++.+||+++..-..   ...|   .
T Consensus       617 l~L~eaig~li~~~~~~~e~~~~~l~~ll~pl~~~l~~~l~~~~~~~~~~~~i~~~i~al~~lakgf~~~~~~~~p~~~~  696 (980)
T 3ibv_A          617 LYLFETVGVLISSGNLTPEEQALYCDSLINALIGKANAALSSDLSALENIISVYCSLMAIGNFAKGFPARGSEEVAWLAS  696 (980)
T ss_dssp             HHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHTTSCC--CHHHHHHHHHHHHHHHHHTSCSCC-CCCSHHHH
T ss_pred             HHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCccHHHHHHHHHHHHHHHhccCCcccCCCCcHHHH
Confidence            556666777777654322   3466655544    44555322    111211 345667777652111   1122   3


Q ss_pred             HHhHHHHHHHhcc--CCCHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHH
Q 046417          217 LDWLVPCLVEFLC--CDDWATRKAAAEVLGKVAVFDKDLATEYKRSCLAALE  266 (595)
Q Consensus       217 l~~lmp~L~e~L~--~dDW~~RkaAaEaLgsIA~avge~f~py~~~~I~~Le  266 (595)
                      |..+++.+...|.  ..+..+|.++.-++..+...+|..+.||.+.++..|-
T Consensus       697 f~~~~~~il~~l~~~~~~~~irea~~~~~~r~i~~lg~~~~p~lp~~i~~ll  748 (980)
T 3ibv_A          697 FNKASDEIFLILDRMGFNEDIRGAVRFTSGRIINVVGPDMLPKVPQLISILL  748 (980)
T ss_dssp             HHHHHHHHHHHHHHSCCSHHHHHHHHHHHHHHTTTTHHHHTTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHhHHHHHHHHHHHHH
Confidence            5567777766665  5778999999999999999999989999988888744

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=97.78  E-value=0.0011  Score=77.77  Aligned_cols=203  Identities=17%  Similarity=0.187  Sum_probs=127.9

Q ss_pred             CcHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccchhhHHHHHHHHHhhccCCChhHHHHHHHHHHHhhhhhcCC
Q 046417           53 DSFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPHLSKMISTVSCRLRDPDSSVRSACVAATTAMSLNITKP  132 (595)
Q Consensus        53 ~~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~PhLpkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~~~  132 (595)
                      +.+..+++.|.+.    +...|..+..+||.+--|-++.  .-+..|+.++..   |.+..||.+++.+||.+.-  .++
T Consensus       472 ev~e~L~~~L~dd----~~~~~~~AalALGli~vGTgn~--~ai~~LL~~~~e---~~~e~vrR~aalgLGll~~--g~~  540 (963)
T 4ady_A          472 EVYEALKEVLYND----SATSGEAAALGMGLCMLGTGKP--EAIHDMFTYSQE---TQHGNITRGLAVGLALINY--GRQ  540 (963)
T ss_dssp             HHHHHHHHHHHTC----CHHHHHHHHHHHHHHHTTCCCH--HHHHHHHHHHHH---CSCHHHHHHHHHHHHHHTT--TCG
T ss_pred             HHHHHHHHHHhcC----CHHHHHHHHHHHhhhhcccCCH--HHHHHHHHHHhc---cCcHHHHHHHHHHHHhhhC--CCh
Confidence            3366777777642    3467788888888775555421  122344444443   4455688888888887632  111


Q ss_pred             cchhccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHhhccc
Q 046417          133 SFSVLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNPEVEQLRKLLPRLGKAVRIEGFKAKAAVLGVIGSVVRVGGAR  212 (595)
Q Consensus       133 ~~~~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d~~~~~L~~Ll~rL~klL~~~~~kaK~alLsAIgSlA~a~g~~  212 (595)
                         ..+..|++.|..+.++.+.-+|++++.-..=+.++  ...+++|+..+.   ++..-.+|.+++-+||-|+ . +. 
T Consensus       541 ---e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn--~~aIq~LL~~~~---~d~~d~VRraAViaLGlI~-~-g~-  609 (963)
T 4ady_A          541 ---ELADDLITKMLASDESLLRYGGAFTIALAYAGTGN--NSAVKRLLHVAV---SDSNDDVRRAAVIALGFVL-L-RD-  609 (963)
T ss_dssp             ---GGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCC--HHHHHHHHHHHH---HCSCHHHHHHHHHHHHHHT-S-SS-
T ss_pred             ---HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCC--HHHHHHHHHHhc---cCCcHHHHHHHHHHHHhhc-c-CC-
Confidence               25678888887778999999988877665544444  335555555533   3444446666666666433 1 21 


Q ss_pred             CcCcHHhHHHHHHHhc-cCCCHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHhH
Q 046417          213 SKGVLDWLVPCLVEFL-CCDDWATRKAAAEVLGKVAVFDKDLATEYKRSCLAALETRRFDKVKIVRETMNRSLEMWK  288 (595)
Q Consensus       213 ~~~yl~~lmp~L~e~L-~~dDW~~RkaAaEaLgsIA~avge~f~py~~~~I~~Le~crfDKVK~VRda~~~aL~~~K  288 (595)
                        +   ..+|.+.+.| .+.||.+|..|+.+||-+...-+.      ..++..|+..-.|....||..+..||...-
T Consensus       610 --~---e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~------~~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig  675 (963)
T 4ady_A          610 --Y---TTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGL------QSAIDVLDPLTKDPVDFVRQAAMIALSMIL  675 (963)
T ss_dssp             --C---SSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCC------HHHHHHHHHHHTCSSHHHHHHHHHHHHHHS
T ss_pred             --H---HHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCc------HHHHHHHHHHccCCCHHHHHHHHHHHHHHh
Confidence              1   2356666655 468999999999999988533221      234456666667999999999888887653

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A

Probab=97.74  E-value=0.0016  Score=73.06  Aligned_cols=209  Identities=15%  Similarity=0.094  Sum_probs=119.1

Q ss_pred             hHHHHHHHHHHHHHh------CCcCcHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccchh-hHHHHHHHHHhhc
Q 046417           35 TLPVATAELESIART------LTQDSFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSP-HLSKMISTVSCRL  107 (595)
Q Consensus        35 T~r~A~~~LD~lA~~------L~~~~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~P-hLpkIL~~IvrrL  107 (595)
                      ..|-++..||.+-+.      +....|+.++..|..    .++.++.++..+|..++.+..+.-.- .-...||.+++.|
T Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~LV~~L~s----~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL   99 (584)
T 3l6x_A           24 HERGSLASLDSLRKGGPPPPNWRQPELPEVIAMLGF----RLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLL   99 (584)
T ss_dssp             ----------------CCCCCCCCCCHHHHHHHTTC----SCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGG
T ss_pred             cccchHHHHHHHHhcCCCCCCcccccHHHHHHHHCC----CCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHH
Confidence            456778889998774      224459999998864    45788889999999998765432111 1124678999999


Q ss_pred             cCCChhHHHHHHHHHHHhhhhh-cC-Ccch---hccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCCCchHHHHHHHHHH
Q 046417          108 RDPDSSVRSACVAATTAMSLNI-TK-PSFS---VLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNPEVEQLRKLLPR  182 (595)
Q Consensus       108 kD~ds~VR~Ac~~aLg~LA~~l-~~-~~~~---~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d~~~~~L~~Ll~r  182 (595)
                      +.++..|+..++++|+.|+..- .+ ...+   -.++||+..|....+..+|..|+.||..+--. ++.-..++..-+|.
T Consensus       100 ~s~~~~vq~~Aa~AL~nLa~~~~~~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~-~~~k~~I~~~alp~  178 (584)
T 3l6x_A          100 DHPKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSH-DSIKMEIVDHALHA  178 (584)
T ss_dssp             GCSSHHHHHHHHHHHHHHTSSSCHHHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTS-GGGHHHHHHHTHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCC-chhhHHHHhccHHH
Confidence            9999999999999999999631 10 1111   16889999985446778899999998887542 11112344445566


Q ss_pred             HHHhhc------------------cCchhHHHHHHHHHHHHHHhhcc------cCcCcHHhHHHHHHHhcc--CCCHHHH
Q 046417          183 LGKAVR------------------IEGFKAKAAVLGVIGSVVRVGGA------RSKGVLDWLVPCLVEFLC--CDDWATR  236 (595)
Q Consensus       183 L~klL~------------------~~~~kaK~alLsAIgSlA~a~g~------~~~~yl~~lmp~L~e~L~--~dDW~~R  236 (595)
                      |+++|-                  .....++..+..+|..++.....      ...+..+.||..|...+.  +.+....
T Consensus       179 Lv~LL~~p~sg~~~~~~~~~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~  258 (584)
T 3l6x_A          179 LTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLV  258 (584)
T ss_dssp             HHHHTHHHHHCCC----------CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHH
T ss_pred             HHHHHhcccccccccccccccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHH
Confidence            666551                  11345666667777777643211      012223444444444321  2344555


Q ss_pred             HHHHHHHHHHHH
Q 046417          237 KAAAEVLGKVAV  248 (595)
Q Consensus       237 kaAaEaLgsIA~  248 (595)
                      ..|+-+|..++.
T Consensus       259 enav~aL~NLs~  270 (584)
T 3l6x_A          259 ENCVCLLRNLSY  270 (584)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             HHHHHHHHHhhc
Confidence            556666655543

>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B

Probab=97.72  E-value=0.00011  Score=87.08  Aligned_cols=169  Identities=9%  Similarity=-0.015  Sum_probs=117.6

Q ss_pred             HHHHHHHHHccccchhhHHHHHHHHHhhccC--CChhHHHHHHHHHHHhhhhhcCCcchh----ccHHHHHHHhh----c
Q 046417           79 NLLTLLSRSHGDSLSPHLSKMISTVSCRLRD--PDSSVRSACVAATTAMSLNITKPSFSV----LSKPLIELILV----E  148 (595)
Q Consensus        79 ~lLG~lAEg~gd~I~PhLpkIL~~IvrrLkD--~ds~VR~Ac~~aLg~LA~~l~~~~~~~----~l~PLi~aLl~----d  148 (595)
                      -.|..++...++.+.+   .+++.+.+.+.+  ++...|+|++|++|++++.+....+..    .++.|+..+-+    +
T Consensus       435 d~L~~l~~l~~~~~~~---~~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d  511 (1023)
T 4hat_C          435 EVLVYLTHLNVIDTEE---IMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKD  511 (1023)
T ss_dssp             HHHHHHHHHCHHHHHH---HHHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHH
T ss_pred             HHHHHHhccCHHHHHH---HHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCc
Confidence            4445666666654333   445555555554  577899999999999998664221222    44444443311    1


Q ss_pred             CChhHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHhhcccC--------cCcHHhH
Q 046417          149 QDVNSQVGGAMCLAAAIDAAPNPEVEQLRKLLPRLGKAVRIEGFKAKAAVLGVIGSVVRVGGARS--------KGVLDWL  220 (595)
Q Consensus       149 ~nk~VQ~~AA~cLaaviE~a~d~~~~~L~~Ll~rL~klL~~~~~kaK~alLsAIgSlA~a~g~~~--------~~yl~~l  220 (595)
                      ....|...+|.+|....+.... ...+|+.++..|+..+..++-.+..++..++..++...+..+        .||++.+
T Consensus       512 ~k~~v~~t~~~~lGry~~wl~~-~~~~L~~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c~~~l~~~~~~e~~p~~~~i  590 (1023)
T 4hat_C          512 NKAVVASDIMYVVGQYPRFLKA-HWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTI  590 (1023)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHH-CHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHhc-cHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHHHH
Confidence            1222444667778877776421 136899999999999977777788888999999998654322        5799999


Q ss_pred             HHHHHHhccCCCHHHHHHHHHHHHHHHHHhH
Q 046417          221 VPCLVEFLCCDDWATRKAAAEVLGKVAVFDK  251 (595)
Q Consensus       221 mp~L~e~L~~dDW~~RkaAaEaLgsIA~avg  251 (595)
                      +..+......-+...+..+.|+++.|+.+++
T Consensus       591 l~~l~~~~~~l~~~~~~~lyeai~~vi~~~~  621 (1023)
T 4hat_C          591 IRDIQKTTADLQPQQVHTFYKACGIIISEER  621 (1023)
T ss_dssp             HHTHHHHHTTSCHHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHHHHhCC
Confidence            9999998887788889999999999999875

>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}

Probab=97.72  E-value=6.1e-05  Score=79.57  Aligned_cols=226  Identities=16%  Similarity=0.089  Sum_probs=116.3

Q ss_pred             hHHHHHHHHHHHHHhCCcCcHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccchhhHHHHHHHHHhhccCCChhH
Q 046417           35 TLPVATAELESIARTLTQDSFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPHLSKMISTVSCRLRDPDSSV  114 (595)
Q Consensus        35 T~r~A~~~LD~lA~~L~~~~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~PhLpkIL~~IvrrLkD~ds~V  114 (595)
                      -.|+..-.+..++.. +++.| ...+.|..-.+++++.+|=.|++.|+-|.+.   .   .++.|.+.+.+.|.|.+|.|
T Consensus        84 lKrLvYLyl~~~~~~-~~e~i-Lv~Nsl~kDl~~~N~~iR~lALRtL~~I~~~---~---m~~~l~~~lk~~L~d~~pyV  155 (355)
T 3tjz_B           84 LRRMCYLTIKEMSCI-AEDVI-IVTSSLTKDMTGKEDSYRGPAVRALCQITDS---T---MLQAIERYMKQAIVDKVPSV  155 (355)
T ss_dssp             HHHHHHHHHHHHTTT-SSCGG-GGHHHHHHHHHSSCHHHHHHHHHHHHHHCCT---T---THHHHHHHHHHHHTCSSHHH
T ss_pred             HHHHHHHHHHHhCCC-HHHHH-HHHHHHHhhcCCCcHhHHHHHHHHHhcCCCH---H---HHHHHHHHHHHHcCCCCHHH
Confidence            567777777777776 45556 6667776556788999999999998877543   2   35577888999999999999


Q ss_pred             HHHHHHHHHHhhhhhcCCcch--hccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCCCch-------------HHHHH--
Q 046417          115 RSACVAATTAMSLNITKPSFS--VLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNPE-------------VEQLR--  177 (595)
Q Consensus       115 R~Ac~~aLg~LA~~l~~~~~~--~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d~~-------------~~~L~--  177 (595)
                      |.+|+.+...+....   |..  .|+.-+-+++ .+.|+.||..|..+|..+.+......             .++.+  
T Consensus       156 Rk~A~l~~~kL~~~~---pe~v~~~~~~l~~ll-~d~n~~V~~~Al~lL~ei~~~d~~a~~kLv~~l~~~~l~~~~~q~~  231 (355)
T 3tjz_B          156 SSSALVSSLHLLKCS---FDVVKRWVNEAQEAA-SSDNIMVQYHALGLLYHVRKNDRLAVSKMISKFTRHGLKSPFAYCM  231 (355)
T ss_dssp             HHHHHHHHHHHTTTC---HHHHHTTHHHHHHHT-TCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCCSCHHHHHH
T ss_pred             HHHHHHHHHHHhccC---HHHHHHHHHHHHHHh-cCCCccHHHHHHHHHHHHHhhchHHHHHHHHHHhcCCCcChHHHHH
Confidence            999999977666543   222  2555555555 78899999777666666655321000             01111  


Q ss_pred             ------------------HHHHHHHHhhccCchhHHHHHHHHHHHHHHhhcccCcCcHHhHHHHHHHhccCCCHHHHHHH
Q 046417          178 ------------------KLLPRLGKAVRIEGFKAKAAVLGVIGSVVRVGGARSKGVLDWLVPCLVEFLCCDDWATRKAA  239 (595)
Q Consensus       178 ------------------~Ll~rL~klL~~~~~kaK~alLsAIgSlA~a~g~~~~~yl~~lmp~L~e~L~~dDW~~RkaA  239 (595)
                                        ++++.|...|++.+-   +.+++|+.+|...... ....+...+..|+-++.+.|-.+|.+|
T Consensus       232 llr~l~~~~~~d~~~~~~~~~~~l~~~L~~~~~---aVvyEa~k~I~~l~~~-~~~~~~~a~~~L~~fLss~d~niryva  307 (355)
T 3tjz_B          232 MIRVASRQLEDEDGSRDSPLFDFIESCLRNKHE---MVVYEAASAIVNLPGC-SAKELAPAVSVLQLFCSSPKAALRYAA  307 (355)
T ss_dssp             HHHHHTCC-----------------CCCCCSSH---HHHHHHHHHHTC------------CCCTHHHHHHSSSSSSHHHH
T ss_pred             HHHHHHHhccccchhhHHHHHHHHHHHHcCCCh---HHHHHHHHHHHhccCC-CHHHHHHHHHHHHHHHcCCCchHHHHH
Confidence                              122222222333222   2334556555532221 112334456677777877777888888


Q ss_pred             HHHHHHHHHHhHHhHHHHHHHHHHHHHhccCCchHHHHHHH
Q 046417          240 AEVLGKVAVFDKDLATEYKRSCLAALETRRFDKVKIVRETM  280 (595)
Q Consensus       240 aEaLgsIA~avge~f~py~~~~I~~Le~crfDKVK~VRda~  280 (595)
                      +..|..|+....+.+..    |-.-+++|-.|.-..++.-+
T Consensus       308 Lr~L~~l~~~~P~~v~~----~n~~ie~li~d~n~sI~t~A  344 (355)
T 3tjz_B          308 VRTLNKVAMKHPSAVTA----CNLDLENLVTDANRSIATLA  344 (355)
T ss_dssp             HHCC-------------------------------------
T ss_pred             HHHHHHHHHHCcHHHHH----HHHHHHHHccCCcHhHHHHH
Confidence            88888888876666654    33345555556555555443

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=97.65  E-value=0.0015  Score=76.65  Aligned_cols=218  Identities=11%  Similarity=0.099  Sum_probs=136.4

Q ss_pred             HHHHHHHHHhhhcCCCChHHHHHHHHHHHHHhCC-cCcHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccchhhH
Q 046417           18 DLKQRVITCLNKLADRDTLPVATAELESIARTLT-QDSFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPHL   96 (595)
Q Consensus        18 ~lk~rvl~~L~KL~DrDT~r~A~~~LD~lA~~L~-~~~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~PhL   96 (595)
                      +.-+.+++.+..=.+.+.+|.|+-.|-.+  .+. ++.++.++..|..   +.+|.+|..++.++|....|-|+..  .+
T Consensus       507 ~ai~~LL~~~~e~~~e~vrR~aalgLGll--~~g~~e~~~~li~~L~~---~~dp~vRygaa~alglAyaGTGn~~--aI  579 (963)
T 4ady_A          507 EAIHDMFTYSQETQHGNITRGLAVGLALI--NYGRQELADDLITKMLA---SDESLLRYGGAFTIALAYAGTGNNS--AV  579 (963)
T ss_dssp             HHHHHHHHHHHHCSCHHHHHHHHHHHHHH--TTTCGGGGHHHHHHHHH---CSCHHHHHHHHHHHHHHTTTSCCHH--HH
T ss_pred             HHHHHHHHHHhccCcHHHHHHHHHHHHhh--hCCChHHHHHHHHHHHh---CCCHHHHHHHHHHHHHHhcCCCCHH--HH
Confidence            34455555544322334555555444433  222 4558888887775   2468888888888887777777531  12


Q ss_pred             HHHHHHHHhhccCCChhHHHHHHHHHHHhhhhhcCCcchhccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCCCchHHHH
Q 046417           97 SKMISTVSCRLRDPDSSVRSACVAATTAMSLNITKPSFSVLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNPEVEQL  176 (595)
Q Consensus        97 pkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~~~~~~~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d~~~~~L  176 (595)
                      .+|+..+   ..|++..||++++.+||-++-.-   +  ..+..++..|....|+.|.-+|++||..+.-+-+.      
T Consensus       580 q~LL~~~---~~d~~d~VRraAViaLGlI~~g~---~--e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~------  645 (963)
T 4ady_A          580 KRLLHVA---VSDSNDDVRRAAVIALGFVLLRD---Y--TTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGL------  645 (963)
T ss_dssp             HHHHHHH---HHCSCHHHHHHHHHHHHHHTSSS---C--SSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCC------
T ss_pred             HHHHHHh---ccCCcHHHHHHHHHHHHhhccCC---H--HHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCc------
Confidence            2233322   35777889999988888765321   1  13566777776778899999999998877644332      


Q ss_pred             HHHHHHHHHhhccCchhHHHHHHHHHHHHHHhhcccCcCcHHhHHHHHHHhccC--CCHHHHHHHHHHHHHHHHHhHH-h
Q 046417          177 RKLLPRLGKAVRIEGFKAKAAVLGVIGSVVRVGGARSKGVLDWLVPCLVEFLCC--DDWATRKAAAEVLGKVAVFDKD-L  253 (595)
Q Consensus       177 ~~Ll~rL~klL~~~~~kaK~alLsAIgSlA~a~g~~~~~yl~~lmp~L~e~L~~--dDW~~RkaAaEaLgsIA~avge-~  253 (595)
                      .+++.-|.++++++...++.+++-++|-|..--..+..|.+..++..|..+..+  +|-..|..|+-++|-|-..=|. .
T Consensus       646 ~~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~~l~~L~~~~~dk~~d~~~~fga~iAqGll~aG~~n~t  725 (963)
T 4ady_A          646 QSAIDVLDPLTKDPVDFVRQAAMIALSMILIQQTEKLNPQVADINKNFLSVITNKHQEGLAKFGACVAQGIMNAGGRNVT  725 (963)
T ss_dssp             HHHHHHHHHHHTCSSHHHHHHHHHHHHHHSTTCCTTTCTTHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHTTGGGTEE
T ss_pred             HHHHHHHHHHccCCCHHHHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhcCCCceE
Confidence            244455556677888778877766666432111123346788888888888864  6778899998888887533332 3


Q ss_pred             HHH
Q 046417          254 ATE  256 (595)
Q Consensus       254 f~p  256 (595)
                      +.+
T Consensus       726 is~  728 (963)
T 4ady_A          726 IQL  728 (963)
T ss_dssp             ECS
T ss_pred             EEe
Confidence            444

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24

Probab=97.59  E-value=0.00021  Score=76.66  Aligned_cols=129  Identities=13%  Similarity=0.060  Sum_probs=93.6

Q ss_pred             cHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccc-hhhHHHHHHHHHhhccCCChhHHHHHHHHHHHhhhhhcC-
Q 046417           54 SFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSL-SPHLSKMISTVSCRLRDPDSSVRSACVAATTAMSLNITK-  131 (595)
Q Consensus        54 ~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I-~PhLpkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~~-  131 (595)
                      .++.++.+|..    +++..+..++.+|..++....+.- .=.-...+|.+++.|+++++.++..++++|..|+..-.+ 
T Consensus         3 ~l~~lv~~L~s----~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~   78 (457)
T 1xm9_A            3 TIPKAVQYLSS----QDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTN   78 (457)
T ss_dssp             CHHHHHHHHHS----SCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHH
T ss_pred             CHHHHHHHHCC----CCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHH
Confidence            37888888864    357899999999999985443211 111235688999999999999999999999999964111 


Q ss_pred             Ccch---hccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhh
Q 046417          132 PSFS---VLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNPEVEQLRKLLPRLGKAV  187 (595)
Q Consensus       132 ~~~~---~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d~~~~~L~~Ll~rL~klL  187 (595)
                      ...+   -.+++|+..|-...+..+|.-|+.||..+.-. ++.-..++...+|.|+++|
T Consensus        79 k~~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~-~~~~~~i~~g~i~~Lv~ll  136 (457)
T 1xm9_A           79 KLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSST-DELKEELIADALPVLADRV  136 (457)
T ss_dssp             HHHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS-SSTHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcC-HHhHHHHHhccHHHHHHHH
Confidence            0111   26889999983267889999999999998876 2222234457889999999

>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}

Probab=97.37  E-value=0.0095  Score=62.84  Aligned_cols=228  Identities=10%  Similarity=0.107  Sum_probs=130.7

Q ss_pred             HHHHHHHhhhcCCC--ChHHHH--HHHHHH-HH--HhCCcCcHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccc
Q 046417           20 KQRVITCLNKLADR--DTLPVA--TAELES-IA--RTLTQDSFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSL   92 (595)
Q Consensus        20 k~rvl~~L~KL~Dr--DT~r~A--~~~LD~-lA--~~L~~~~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I   92 (595)
                      |..++|-...+.+.  |+.+|-  +.-|-. +.  ..++.-....++..+..-.++.+...||-+.+.+-.++..-.+.|
T Consensus        24 k~~v~qe~r~fn~~~~~~~kc~~~l~kll~l~~~G~~f~~~e~t~lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~~~e~i  103 (355)
T 3tjz_B           24 KSAVLQEARVFNETPINPRKCAHILTKILYLINQGEHLGTTEATEAFFAMTKLFQSNDPTLRRMCYLTIKEMSCIAEDVI  103 (355)
T ss_dssp             HHHHHHHGGGTTSSSCCHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHGGGGCCCHHHHHHHHHHHHHHTTTSSCGG
T ss_pred             HHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHCCCCCchhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCHHHHH
Confidence            55577776666654  777764  333222 22  234332344444444444566789999999999988888744433


Q ss_pred             hhhHHHHHHHHHhhccCCChhHHHHHHHHHHHhhhhhcCCcch-hccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCCCc
Q 046417           93 SPHLSKMISTVSCRLRDPDSSVRSACVAATTAMSLNITKPSFS-VLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNP  171 (595)
Q Consensus        93 ~PhLpkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~~~~~~-~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d~  171 (595)
                           -++..|.+-++|+++.||..+..+|+.+..    +... .+..++-.+| .+.+++|-..|+.|...++.-.++ 
T Consensus       104 -----Lv~Nsl~kDl~~~N~~iR~lALRtL~~I~~----~~m~~~l~~~lk~~L-~d~~pyVRk~A~l~~~kL~~~~pe-  172 (355)
T 3tjz_B          104 -----IVTSSLTKDMTGKEDSYRGPAVRALCQITD----STMLQAIERYMKQAI-VDKVPSVSSSALVSSLHLLKCSFD-  172 (355)
T ss_dssp             -----GGHHHHHHHHHSSCHHHHHHHHHHHHHHCC----TTTHHHHHHHHHHHH-TCSSHHHHHHHHHHHHHHTTTCHH-
T ss_pred             -----HHHHHHHhhcCCCcHhHHHHHHHHHhcCCC----HHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHHhccCHH-
Confidence                 346788899999999999999999999875    2222 2555555666 799999999999999999876544 


Q ss_pred             hHHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHhhcccCcCcHHhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhH
Q 046417          172 EVEQLRKLLPRLGKAVRIEGFKAKAAVLGVIGSVVRVGGARSKGVLDWLVPCLVEFLCCDDWATRKAAAEVLGKVAVFDK  251 (595)
Q Consensus       172 ~~~~L~~Ll~rL~klL~~~~~kaK~alLsAIgSlA~a~g~~~~~yl~~lmp~L~e~L~~dDW~~RkaAaEaLgsIA~avg  251 (595)
                         .++.++..+..++.+.+..+...   |++.+.+..... ...+..+++.+.+.---+.|..    ++.|-.++....
T Consensus       173 ---~v~~~~~~l~~ll~d~n~~V~~~---Al~lL~ei~~~d-~~a~~kLv~~l~~~~l~~~~~q----~~llr~l~~~~~  241 (355)
T 3tjz_B          173 ---VVKRWVNEAQEAASSDNIMVQYH---ALGLLYHVRKND-RLAVSKMISKFTRHGLKSPFAY----CMMIRVASRQLE  241 (355)
T ss_dssp             ---HHHTTHHHHHHHTTCSSHHHHHH---HHHHHHHHHTTC-HHHHHHHHHHHHSSCCSCHHHH----HHHHHHHTCC--
T ss_pred             ---HHHHHHHHHHHHhcCCCccHHHH---HHHHHHHHHhhc-hHHHHHHHHHHhcCCCcChHHH----HHHHHHHHHhcc
Confidence               45667888888998888766544   444444432211 1123444554443211245653    333322222111


Q ss_pred             HhHHHHHHHHHHHHHhcc
Q 046417          252 DLATEYKRSCLAALETRR  269 (595)
Q Consensus       252 e~f~py~~~~I~~Le~cr  269 (595)
                      +........+++.|+.+-
T Consensus       242 ~d~~~~~~~~~~~l~~~L  259 (355)
T 3tjz_B          242 DEDGSRDSPLFDFIESCL  259 (355)
T ss_dssp             ---------------CCC
T ss_pred             ccchhhHHHHHHHHHHHH
Confidence            111223455666677664

>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}

Probab=97.36  E-value=0.0016  Score=66.25  Aligned_cols=190  Identities=13%  Similarity=0.140  Sum_probs=132.8

Q ss_pred             CChhHHHHHHHHHhhh-----cCCCChHHHHHHHHHHHHHhCC--cCc----HHHHHHhhhhcCCCCChHHHHHHHHHHH
Q 046417           14 PSTNDLKQRVITCLNK-----LADRDTLPVATAELESIARTLT--QDS----FSSFLNCLQTTDSSSKSPVRKQCVNLLT   82 (595)
Q Consensus        14 ~~~~~lk~rvl~~L~K-----L~DrDT~r~A~~~LD~lA~~L~--~~~----lp~fL~~L~d~~ss~kp~vRKaaI~lLG   82 (595)
                      +..+.|+..+.+++.+     |-..|. +--.+.|+.|...++  ++.    +..++..+.-.+-+.++.+=..++..|.
T Consensus        34 e~v~~L~~~~~~~~~~~~~~~lfs~d~-k~~~~ale~L~~~l~~~~~~~~~~lDll~kw~~lr~~d~N~~v~~~~L~~L~  112 (266)
T 2of3_A           34 EHISQLQTLLGNQAKVSLMSQLFHKDF-KQHLAALDSLVRLADTSPRSLLSNSDLLLKWCTLRFFETNPAALIKVLELCK  112 (266)
T ss_dssp             HHHHHHHHHHHTTBCHHHHHHHTCSCH-HHHHHHHHHHHHHHHHCHHHHHHTHHHHHHHHHHHTTSCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccHHHHHHhcCCCH-HHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence            3456777777766443     334453 334455555555554  223    3334565543344557778788888888


Q ss_pred             HHHHHccc---cchhh-HHHHHHHHHhhccCCChhHHHHHHHHHHHhhhhhcCCcchhccHHHHHHHhhcCChhHHHHHH
Q 046417           83 LLSRSHGD---SLSPH-LSKMISTVSCRLRDPDSSVRSACVAATTAMSLNITKPSFSVLSKPLIELILVEQDVNSQVGGA  158 (595)
Q Consensus        83 ~lAEg~gd---~I~Ph-LpkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~~~~~~~~l~PLi~aLl~d~nk~VQ~~AA  158 (595)
                      .+.+...+   .+..| ...++|+++.+|-|+...||++....+-.+..-+   +...++..+++++ ..+|..+-...+
T Consensus       113 ~l~~~l~~~~y~~~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~---~~~~v~~~l~~g~-ksKN~R~R~e~l  188 (266)
T 2of3_A          113 VIVELIRDTETPMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVV---GPLKMTPMLLDAL-KSKNARQRSECL  188 (266)
T ss_dssp             HHHHHHHHTTCCCCHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHH---CHHHHHHHHHHGG-GCSCHHHHHHHH
T ss_pred             HHHHHHHhccccchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHC---CHHHHHHHHHHHH-ccCCHHHHHHHH
Confidence            87766543   35555 5789999999999999999999999998887654   2223677788887 677888888888


Q ss_pred             HHHHHHHhcCCCchHHHHHHHH---HHHHHhhccCchhHHHHHHHHHHHHHHhhccc
Q 046417          159 MCLAAAIDAAPNPEVEQLRKLL---PRLGKAVRIEGFKAKAAVLGVIGSVVRVGGAR  212 (595)
Q Consensus       159 ~cLaaviE~a~d~~~~~L~~Ll---~rL~klL~~~~~kaK~alLsAIgSlA~a~g~~  212 (595)
                      .+|..+++.-+-...    +.+   +.+.+++.+.+-.+|.+++.++..+-...|..
T Consensus       189 ~~l~~li~~~G~~~~----~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~Gd~  241 (266)
T 2of3_A          189 LVIEYYITNAGISPL----KSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKFEGDQ  241 (266)
T ss_dssp             HHHHHHHHHHCSGGG----GGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHHHTTH
T ss_pred             HHHHHHHHhcCCCcc----ccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHH
Confidence            889999988544322    244   88889999999999999999998777655544

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}

Probab=97.31  E-value=0.026  Score=65.12  Aligned_cols=232  Identities=15%  Similarity=0.133  Sum_probs=145.4

Q ss_pred             CCcCcHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHcc--ccchhhHHHHHHHHHhhccCCChh---HHHHHHHHHHH
Q 046417           50 LTQDSFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHG--DSLSPHLSKMISTVSCRLRDPDSS---VRSACVAATTA  124 (595)
Q Consensus        50 L~~~~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~g--d~I~PhLpkIL~~IvrrLkD~ds~---VR~Ac~~aLg~  124 (595)
                      +....+|.|+.++..    .++..|+.++++|+.++.--.  ..+..+  -.++.++..|......   +|..|+.||++
T Consensus       454 ~eaGvIp~Lv~Ll~S----~s~~~re~A~~aL~nLS~d~~~R~~lvqq--Gal~~LL~lL~s~~~~~~~~k~~AA~ALAr  527 (778)
T 3opb_A          454 LRTELISFLKREMHN----LSPNCKQQVVRIIYNITRSKNFIPQLAQQ--GAVKIILEYLANKQDIGEPIRILGCRALTR  527 (778)
T ss_dssp             TTTTHHHHHHHHGGG----SCHHHHHHHHHHHHHHHTSGGGHHHHHHT--THHHHHHHHTTCC---CCHHHHHHHHHHHH
T ss_pred             HHCcCHHHHHHHHcC----CCHHHHHHHHHHHHHHcCCHHHHHHHHHC--CCHHHHHHHHhcCCCcchHHHHHHHHHHHH
Confidence            455668888877754    468999999999999985421  222221  3456667777665433   89999999999


Q ss_pred             hhhhh-----cC-CcchhccHHHHHHHhhcCCh------------hH-HHHHHHHHHHHHhcCC---Cch-HHHHH--HH
Q 046417          125 MSLNI-----TK-PSFSVLSKPLIELILVEQDV------------NS-QVGGAMCLAAAIDAAP---NPE-VEQLR--KL  179 (595)
Q Consensus       125 LA~~l-----~~-~~~~~~l~PLi~aLl~d~nk------------~V-Q~~AA~cLaaviE~a~---d~~-~~~L~--~L  179 (595)
                      +.-..     .. ......++||+..|..+.+.            .. +--|+.||..+.....   +.. ..++.  ..
T Consensus       528 Llis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga  607 (778)
T 3opb_A          528 MLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVY  607 (778)
T ss_dssp             HHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHH
T ss_pred             HHhcCCHHHHcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCH
Confidence            88322     10 01013678999888311111            12 4578888888876532   122 23554  48


Q ss_pred             HHHHHHhhccCchhHHHHHHHHHHHHHHhhc---ccCc-CcHHh---HHHHHHHhccCCCHHHHHHHHHHHHHHHHHhH-
Q 046417          180 LPRLGKAVRIEGFKAKAAVLGVIGSVVRVGG---ARSK-GVLDW---LVPCLVEFLCCDDWATRKAAAEVLGKVAVFDK-  251 (595)
Q Consensus       180 l~rL~klL~~~~~kaK~alLsAIgSlA~a~g---~~~~-~yl~~---lmp~L~e~L~~dDW~~RkaAaEaLgsIA~avg-  251 (595)
                      ++.|..+|.+++..+|.++..+|..++....   ..|. ..-+.   -++.|+.++..+|..+|.+|+-+|+.++.... 
T Consensus       608 ~~~L~~LL~s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~~~  687 (778)
T 3opb_A          608 WSTIENLMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATTIPL  687 (778)
T ss_dssp             HHHHHHGGGCSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHH
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCChH
Confidence            8999999999998999999999999986332   1221 11112   28899999999999999999999998865332 


Q ss_pred             ---HhHH--HHHHHHHHHHHhccCCchHHHHHHHHHHHHHhH
Q 046417          252 ---DLAT--EYKRSCLAALETRRFDKVKIVRETMNRSLEMWK  288 (595)
Q Consensus       252 ---e~f~--py~~~~I~~Le~crfDKVK~VRda~~~aL~~~K  288 (595)
                         ..+.  .....++.+|+.- .|....+..++.--..++.
T Consensus       688 ia~~ll~~~~gi~~Ll~lL~~~-~~~~~l~~R~~~~l~NL~~  728 (778)
T 3opb_A          688 IAKELLTKKELIENAIQVFADQ-IDDIELRQRLLMLFFGLFE  728 (778)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHccccHHHHHHHHhcc-CCCHHHHHHHHHHHHHHHH
Confidence               1221  1334556666642 2444444444433333333

>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}

Probab=97.27  E-value=0.0017  Score=72.14  Aligned_cols=203  Identities=13%  Similarity=0.080  Sum_probs=133.9

Q ss_pred             HHHHHH--HHHhhhcCCC--C-----hHHHHHHHHHHHHHhCCcCcHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHc
Q 046417           18 DLKQRV--ITCLNKLADR--D-----TLPVATAELESIARTLTQDSFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSH   88 (595)
Q Consensus        18 ~lk~rv--l~~L~KL~Dr--D-----T~r~A~~~LD~lA~~L~~~~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~   88 (595)
                      ++--|+  +-+|+|++|=  |     -+..|++.|-.+ .++|++ +..+...+ .....+.|.+|-.+++.|-.+    
T Consensus       218 DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLGaL-~hLp~e-~~IL~qLV-~~l~~~~WEVRHGGLLGLKYL----  290 (800)
T 3oc3_A          218 KLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLSRI-YPLIGP-NDIIEQLV-GFLDSGDWQVQFSGLIALGYL----  290 (800)
T ss_dssp             THHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHHHH-TTTSCS-CCHHHHHT-TGGGCSCHHHHHHHHHHHHHT----
T ss_pred             HHHHHHHHHHHhccccccccCeeeeehHHHHHHHHHHH-HhCChh-HHHHHHHH-hhcCCCCeeehhhhHHHHHHH----
Confidence            444444  4567777652  2     466788888888 899877 43333333 334556799999999999998    


Q ss_pred             cccchhhHHHHHHHHHhhccCCChhHHHHHHHHHHHhhhhhcCCc-chhccHHHHHHHhhcCChhHHHHHHHH-HHHHHh
Q 046417           89 GDSLSPHLSKMISTVSCRLRDPDSSVRSACVAATTAMSLNITKPS-FSVLSKPLIELILVEQDVNSQVGGAMC-LAAAID  166 (595)
Q Consensus        89 gd~I~PhLpkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~~~~-~~~~l~PLi~aLl~d~nk~VQ~~AA~c-LaaviE  166 (595)
                      .|.+.. |+.+++.++.+|+|+|-.||.+|+.+|.-++    .+. ...++.-|.+.|..-.+-.+-.++.+- |++++.
T Consensus       291 ~DLL~~-Ld~Vv~aVL~GL~D~DDDVRAVAAetLiPIA----~p~~l~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s  365 (800)
T 3oc3_A          291 KEFVED-KDGLCRKLVSLLSSPDEDIKLLSAELLCHFP----ITDSLDLVLEKCWKNIESEELISVSKTSNLSLLTKIYR  365 (800)
T ss_dssp             GGGCCC-HHHHHHHHHHHTTCSSHHHHHHHHHHHTTSC----CSSTHHHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHH
T ss_pred             HHHHHH-HHHHHHHHHhhcCCcccHHHHHHHHHhhhhc----chhhHHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHc
Confidence            555544 9999999999999999999999999998888    222 123666677777432232233333332 566655


Q ss_pred             cCCCchHHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHhhcccCcCcHHhHHHHH-HHhccCCCHHHHHHHHHHHH
Q 046417          167 AAPNPEVEQLRKLLPRLGKAVRIEGFKAKAAVLGVIGSVVRVGGARSKGVLDWLVPCL-VEFLCCDDWATRKAAAEVLG  244 (595)
Q Consensus       167 ~a~d~~~~~L~~Ll~rL~klL~~~~~kaK~alLsAIgSlA~a~g~~~~~yl~~lmp~L-~e~L~~dDW~~RkaAaEaLg  244 (595)
                      .-....  ..+.++|||...|++.-..+|.+++.++.++.          ...++..+ +..|-..+-..|..+.++.-
T Consensus       366 ~p~~a~--~dp~LVPRL~PFLRHtITSVR~AVL~TL~tfL----------~~~~LRLIFQNILLE~neeIl~lS~~VWk  432 (800)
T 3oc3_A          366 ENPELS--IPPERLKDIFPCFTSPVPEVRTSILNMVKNLS----------EESIDFLVAEVVLIEEKDEIREMAIKLLK  432 (800)
T ss_dssp             HCTTCC--CCSGGGGGTGGGGTCSSHHHHHHHHHHTTTCC----------CHHHHHHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred             CCcccc--cChHHHHHHHhhhcCCcHHHHHHHHHHHHHHH----------hhhHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence            421111  11289999999999999999999988876544          22333433 33344556566666666663

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}

Probab=97.25  E-value=0.0033  Score=62.56  Aligned_cols=167  Identities=12%  Similarity=0.069  Sum_probs=111.1

Q ss_pred             HHHHHhhccCCCh--hHHHHHHHHHHHhhhhhcCC-cch---hccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCCCchH
Q 046417          100 ISTVSCRLRDPDS--SVRSACVAATTAMSLNITKP-SFS---VLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNPEV  173 (595)
Q Consensus       100 L~~IvrrLkD~ds--~VR~Ac~~aLg~LA~~l~~~-~~~---~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d~~~  173 (595)
                      +|.+++.|+.+++  .|+..+++++..++..-.+. ..+   -.++||+..| ...++.+|..|+.||..+.-..++--.
T Consensus        10 i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL-~s~~~~vq~~Aa~aL~nLa~~~~~nk~   88 (233)
T 3tt9_A           10 LERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLL-KVQNEDVQRAVCGALRNLVFEDNDNKL   88 (233)
T ss_dssp             HHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGG-GCCCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHH-cCCCHHHHHHHHHHHHHHHhCCHHHHH
Confidence            5688889998888  88888888998888532110 111   1578888888 678899999999999998743211111


Q ss_pred             HHHH-HHHHHHHHhhc-cCchhHHHHHHHHHHHHHHhhcccCcCcHHhHHHHHHHhcc----------------CCCHHH
Q 046417          174 EQLR-KLLPRLGKAVR-IEGFKAKAAVLGVIGSVVRVGGARSKGVLDWLVPCLVEFLC----------------CDDWAT  235 (595)
Q Consensus       174 ~~L~-~Ll~rL~klL~-~~~~kaK~alLsAIgSlA~a~g~~~~~yl~~lmp~L~e~L~----------------~dDW~~  235 (595)
                      .+.. --+|.|+++|. .....++..+..++..++..... ........+|.|.+.+.                ..+-.+
T Consensus        89 ~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~-k~~i~~~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~v  167 (233)
T 3tt9_A           89 EVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKL-KNLMITEALLTLTENIIIPFSGWPEGDYPKANGLLDFDI  167 (233)
T ss_dssp             HHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGG-HHHHHHHHHHHHCCCCCHHHHCCCGGGCCCCCTTCCHHH
T ss_pred             HHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhh-HHHHHhccHHHHHHHHhccccCCcccccccccccchHHH
Confidence            2222 36788999997 46788888888888888743221 12334556788877542                125588


Q ss_pred             HHHHHHHHHHHHHHh---HHhHHHH---HHHHHHHHHhc
Q 046417          236 RKAAAEVLGKVAVFD---KDLATEY---KRSCLAALETR  268 (595)
Q Consensus       236 RkaAaEaLgsIA~av---ge~f~py---~~~~I~~Le~c  268 (595)
                      +..|+.||..++.+.   +..+..+   .+..+.++..|
T Consensus       168 ~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~  206 (233)
T 3tt9_A          168 FYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGT  206 (233)
T ss_dssp             HHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhh
Confidence            999999999997632   2334322   35566666665

>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5

Probab=97.19  E-value=0.00015  Score=72.79  Aligned_cols=157  Identities=22%  Similarity=0.202  Sum_probs=87.8

Q ss_pred             hhhcCCCCChHHHHHHHHHHHHHHHHccccchhhHHHHHHHHHhhccCCChhHHHHHHHHHHHhhhhhcCCcchhccHHH
Q 046417           62 LQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPHLSKMISTVSCRLRDPDSSVRSACVAATTAMSLNITKPSFSVLSKPL  141 (595)
Q Consensus        62 L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~PhLpkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~~~~~~~~l~PL  141 (595)
                      |.....++++.+|..+...|+           +      +.+...++|+++.||.+++..+   ..            ++
T Consensus        79 l~~L~~D~~~~VR~~aA~~L~-----------~------~~L~~ll~D~d~~VR~~aA~~l---~~------------~~  126 (244)
T 1lrv_A           79 LTPLIRDSDEVVRRAVAYRLP-----------R------EQLSALMFDEDREVRITVADRL---PL------------EQ  126 (244)
T ss_dssp             GGGGTTCSSHHHHHHHHTTSC-----------S------GGGGGTTTCSCHHHHHHHHHHS---CT------------GG
T ss_pred             HHHHccCcCHHHHHHHHHHCC-----------H------HHHHHHHcCCCHHHHHHHHHhC---CH------------HH
Confidence            334345677899988886532           1      3567778899999998887642   11            11


Q ss_pred             HHHHhhcCChhHHHHHHHHHHH-HHhc-CCCchHHHHH-----HHH-HHHHHhhccCchhHHHHHHHHHHHHHHhhcccC
Q 046417          142 IELILVEQDVNSQVGGAMCLAA-AIDA-APNPEVEQLR-----KLL-PRLGKAVRIEGFKAKAAVLGVIGSVVRVGGARS  213 (595)
Q Consensus       142 i~aLl~d~nk~VQ~~AA~cLaa-viE~-a~d~~~~~L~-----~Ll-~rL~klL~~~~~kaK~alLsAIgSlA~a~g~~~  213 (595)
                      +..|+++.+..|..+++..+.. .+.. +.+.. +.+.     .+. +-|..+++++...++.+++..+           
T Consensus       127 L~~L~~D~d~~VR~~aA~~l~~~~l~~l~~D~d-~~VR~~aa~~l~~~ll~~ll~D~d~~VR~aaa~~l-----------  194 (244)
T 1lrv_A          127 LEQMAADRDYLVRAYVVQRIPPGRLFRFMRDED-RQVRKLVAKRLPEESLGLMTQDPEPEVRRIVASRL-----------  194 (244)
T ss_dssp             GGGGTTCSSHHHHHHHHHHSCGGGGGGTTTCSC-HHHHHHHHHHSCGGGGGGSTTCSSHHHHHHHHHHC-----------
T ss_pred             HHHHHcCCCHHHHHHHHHhcCHHHHHHHHcCCC-HHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHhC-----------
Confidence            2233356666666666653210 0000 01100 0110     000 1122355666666665544321           


Q ss_pred             cCcHHhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHH
Q 046417          214 KGVLDWLVPCLVEFLCCDDWATRKAAAEVLGKVAVFDKDLATEYKRSCLAALETRRFDKVKIVRETMNRSLEM  286 (595)
Q Consensus       214 ~~yl~~lmp~L~e~L~~dDW~~RkaAaEaLgsIA~avge~f~py~~~~I~~Le~crfDKVK~VRda~~~aL~~  286 (595)
                            -.+.|..++.|++|++|.++++.|+                 ...|... -|....||.++.++|.+
T Consensus       195 ------~~~~L~~Ll~D~d~~VR~~aa~~l~-----------------~~~L~~L-~D~~~~VR~aa~~~L~~  243 (244)
T 1lrv_A          195 ------RGDDLLELLHDPDWTVRLAAVEHAS-----------------LEALREL-DEPDPEVRLAIAGRLGI  243 (244)
T ss_dssp             ------CGGGGGGGGGCSSHHHHHHHHHHSC-----------------HHHHHHC-CCCCHHHHHHHHCCC--
T ss_pred             ------CHHHHHHHHcCCCHHHHHHHHHcCC-----------------HHHHHHc-cCCCHHHHHHHHHHhCC
Confidence                  0245666788999999999999876                 1234445 69999999999887643

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}

Probab=97.16  E-value=0.0091  Score=68.82  Aligned_cols=173  Identities=16%  Similarity=0.136  Sum_probs=115.3

Q ss_pred             hHHHHHHHHHHHHHhCC----------cCcHHHHHHhhhhcCCCC---------Ch-HHHHHHHHHHHHHHHHcc---cc
Q 046417           35 TLPVATAELESIARTLT----------QDSFSSFLNCLQTTDSSS---------KS-PVRKQCVNLLTLLSRSHG---DS   91 (595)
Q Consensus        35 T~r~A~~~LD~lA~~L~----------~~~lp~fL~~L~d~~ss~---------kp-~vRKaaI~lLG~lAEg~g---d~   91 (595)
                      .+..|+.+|-.|+-.-+          .+.+++++..|......+         -+ ..+.+++++|+.+|..-.   +.
T Consensus       517 ~k~~AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~  596 (778)
T 3opb_A          517 IRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEE  596 (778)
T ss_dssp             HHHHHHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHH
T ss_pred             HHHHHHHHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchH
Confidence            35578888888774322          244899999987311111         12 458899999999998762   33


Q ss_pred             chhh-HH--HHHHHHHhhccCCChhHHHHHHHHHHHhhhhhcC--Ccch----h----ccHHHHHHHhhcCChhHHHHHH
Q 046417           92 LSPH-LS--KMISTVSCRLRDPDSSVRSACVAATTAMSLNITK--PSFS----V----LSKPLIELILVEQDVNSQVGGA  158 (595)
Q Consensus        92 I~Ph-Lp--kIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~~--~~~~----~----~l~PLi~aLl~d~nk~VQ~~AA  158 (595)
                      +... +.  ..++.|...|.+.+..||.|+++++..|+..-..  +.+.    .    -+++|+..+ ...|..+|.+|+
T Consensus       597 ~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll-~s~D~~~r~AAa  675 (778)
T 3opb_A          597 VCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLL-QLSDVESQRAVA  675 (778)
T ss_dssp             HHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGG-GCSCHHHHHHHH
T ss_pred             HHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhccHHHHHHHH-cCCCHHHHHHHH
Confidence            3222 22  4789999999999999999999999999963310  0110    0    256677666 778899999999


Q ss_pred             HHHHHHHhcCCCchHHHH--HHHHHHHHHhhcc--CchhHHHHHHHHHHHHHHh
Q 046417          159 MCLAAAIDAAPNPEVEQL--RKLLPRLGKAVRI--EGFKAKAAVLGVIGSVVRV  208 (595)
Q Consensus       159 ~cLaaviE~a~d~~~~~L--~~Ll~rL~klL~~--~~~kaK~alLsAIgSlA~a  208 (595)
                      .||+.+....+.....++  ...+..++.+|..  +.-.++.-++-++..++..
T Consensus       676 gALAnLts~~~~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~~  729 (778)
T 3opb_A          676 AIFANIATTIPLIAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFEV  729 (778)
T ss_dssp             HHHHHHHHHCHHHHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHhcCCChHHHHHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHHh
Confidence            999998543211111222  2466677777766  6666666667788888863

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}

Probab=97.12  E-value=0.011  Score=58.70  Aligned_cols=171  Identities=12%  Similarity=0.083  Sum_probs=106.3

Q ss_pred             HHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccchh-hHHHHHHHHHhhccCCChhHHHHHHHHHHHhhhhhcCC-
Q 046417           55 FSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSP-HLSKMISTVSCRLRDPDSSVRSACVAATTAMSLNITKP-  132 (595)
Q Consensus        55 lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~P-hLpkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~~~-  132 (595)
                      ++.++..|...  +++..++..+...+..++.+..+.-.- .-...||.+++.|+.+++.|+..++|+|..|+..-.+. 
T Consensus        10 i~~lV~lL~s~--~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk   87 (233)
T 3tt9_A           10 LERAVSMLEAD--HMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNK   87 (233)
T ss_dssp             HHHHHHTCCSS--CCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHhCCC--CchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHH
Confidence            88888887642  223378888888999998776432211 11245799999999999999999999999998632111 


Q ss_pred             cch---hccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCCCch-HHHHHHHHHHHHHhhc-----c-----------Cch
Q 046417          133 SFS---VLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNPE-VEQLRKLLPRLGKAVR-----I-----------EGF  192 (595)
Q Consensus       133 ~~~---~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d~~-~~~L~~Ll~rL~klL~-----~-----------~~~  192 (595)
                      ..+   -.++||+..|-...+..+|..|+.+|-.+--.  +.. ..+...-+|.|..++-     +           ...
T Consensus        88 ~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~--~~~k~~i~~~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~  165 (233)
T 3tt9_A           88 LEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSN--DKLKNLMITEALLTLTENIIIPFSGWPEGDYPKANGLLDF  165 (233)
T ss_dssp             HHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTS--GGGHHHHHHHHHHHHCCCCCHHHHCCCGGGCCCCCTTCCH
T ss_pred             HHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcC--hhhHHHHHhccHHHHHHHHhccccCCcccccccccccchH
Confidence            111   17889999984356788999999888777432  111 1233344555555442     1           133


Q ss_pred             hHHHHHHHHHHHHHHhhcc------cCcCcHHhHHHHHHHhcc
Q 046417          193 KAKAAVLGVIGSVVRVGGA------RSKGVLDWLVPCLVEFLC  229 (595)
Q Consensus       193 kaK~alLsAIgSlA~a~g~------~~~~yl~~lmp~L~e~L~  229 (595)
                      .++..+..++..++.+...      ...+.++.|+..|.....
T Consensus       166 ~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~  208 (233)
T 3tt9_A          166 DIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIA  208 (233)
T ss_dssp             HHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhh
Confidence            5666667777777653311      112334555555555443

>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}

Probab=97.10  E-value=0.013  Score=58.79  Aligned_cols=182  Identities=12%  Similarity=0.092  Sum_probs=137.0

Q ss_pred             cCcHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccc-hhhHHHHHHHHHhhccCCChhHHHHHHHHHHHhhhhhc
Q 046417           52 QDSFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSL-SPHLSKMISTVSCRLRDPDSSVRSACVAATTAMSLNIT  130 (595)
Q Consensus        52 ~~~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I-~PhLpkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~  130 (595)
                      .+.+..++..|.+    .++.++-.++.+++.+-...++.+ ...+.++++.|++.+++.|-.|--=+..+|+.+-... 
T Consensus        32 e~~l~~L~~LL~d----kD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~v-  106 (265)
T 3b2a_A           32 KRALFLILELAGE----DDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDV-  106 (265)
T ss_dssp             HHHHHHHHHHTTS----SCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTC-
T ss_pred             hhHHHHHHHHHhc----cchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCC-
Confidence            3346666766654    468999999999999999987666 6689999999999999999888666777777777654 


Q ss_pred             CCcch-hccHHHHHHHh---hcCChhHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHH
Q 046417          131 KPSFS-VLSKPLIELIL---VEQDVNSQVGGAMCLAAAIDAAPNPEVEQLRKLLPRLGKAVRIEGFKAKAAVLGVIGSVV  206 (595)
Q Consensus       131 ~~~~~-~~l~PLi~aLl---~d~nk~VQ~~AA~cLaaviE~a~d~~~~~L~~Ll~rL~klL~~~~~kaK~alLsAIgSlA  206 (595)
                        |.. .-+.-++.+|.   ..++...+.-||-.|..+  .    +....+++...+..++.+.+.++|.+.+.++-.++
T Consensus       107 --pL~~~~y~Kl~~aL~dlik~~~~il~~eaae~Lgkl--k----v~~~~~~V~~~l~sLl~Skd~~vK~agl~~L~eia  178 (265)
T 3b2a_A          107 --PMGSKTFLKAAKTLVSLLESPDDMMRIETIDVLSKL--Q----PLEDSKLVRTYINELVVSPDLYTKVAGFCLFLNML  178 (265)
T ss_dssp             --CBCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHC--C----BSCCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHHG
T ss_pred             --CCCHHHHHHHHHHHHHHhcCCCchHHHHHHHHhCcC--C----cccchHHHHHHHHHHHhCCChhHHHHHHHHHHHhh
Confidence              222 12233444442   477877787777766665  1    12234577788888889999999999999998877


Q ss_pred             HhhcccCcCcHHhHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Q 046417          207 RVGGARSKGVLDWLVPCLVEFLCCDDWATRKAAAEVLGKVAV  248 (595)
Q Consensus       207 ~a~g~~~~~yl~~lmp~L~e~L~~dDW~~RkaAaEaLgsIA~  248 (595)
                      .-.+.  ...++.++.-+.++|.++|=.++.-|+++|-.|+.
T Consensus       179 ~~S~D--~~i~~~I~~eI~elL~~eD~~l~e~aLd~Le~ils  218 (265)
T 3b2a_A          179 NSSAD--SGHLTLILDEIPSLLQNDNEFIVELALDVLEKALS  218 (265)
T ss_dssp             GGCSS--CCCGGGTTTTHHHHHTCSCHHHHHHHHHHHHHHTT
T ss_pred             cccCC--HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence            64443  35677788889999999999999999999988876

>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A

Probab=97.01  E-value=0.00087  Score=75.93  Aligned_cols=151  Identities=15%  Similarity=0.172  Sum_probs=94.4

Q ss_pred             HHHHHHHhhccCCChhHHHHHHHHHHHhhhhhcCCcch---hccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCCCchHH
Q 046417           98 KMISTVSCRLRDPDSSVRSACVAATTAMSLNITKPSFS---VLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNPEVE  174 (595)
Q Consensus        98 kIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~~~~~~---~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d~~~~  174 (595)
                      +|+|.| +.|+.+++.+|..+|+||+.|+..-......   ..+.+++..|+.|.+..|+..|+.||..++...++....
T Consensus        35 ~i~Pll-~~L~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~~  113 (684)
T 4gmo_A           35 KILPVL-KDLKSPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFCV  113 (684)
T ss_dssp             TTHHHH-HHHSSSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred             hHHHHH-HHcCCCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHHH
Confidence            456644 5689999999999999999998532111111   267788888778999999999999999987665433322


Q ss_pred             HH-H-HHHHHHHHhhcc-------C-------c-------hhHHHHHHHHHHHHHHhhcccCcCcH-HhHHHHHHHhccC
Q 046417          175 QL-R-KLLPRLGKAVRI-------E-------G-------FKAKAAVLGVIGSVVRVGGARSKGVL-DWLVPCLVEFLCC  230 (595)
Q Consensus       175 ~L-~-~Ll~rL~klL~~-------~-------~-------~kaK~alLsAIgSlA~a~g~~~~~yl-~~lmp~L~e~L~~  230 (595)
                      ++ . .+++.|..+|+.       .       .       +..-..++.++..++........... ...+|.|..+|.+
T Consensus       114 ~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L~~  193 (684)
T 4gmo_A          114 HLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRLIS  193 (684)
T ss_dssp             HHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHHHh
Confidence            21 1 144444444321       0       0       11223456677777764433221111 2456666666642


Q ss_pred             ---CCHHHHHHHHHHHHHHHHH
Q 046417          231 ---DDWATRKAAAEVLGKVAVF  249 (595)
Q Consensus       231 ---dDW~~RkaAaEaLgsIA~a  249 (595)
                         ....++.+|++||+.+..-
T Consensus       194 ~~~~~~~v~~~a~~~L~~ls~d  215 (684)
T 4gmo_A          194 ADIAPQDIYEEAISCLTTLSED  215 (684)
T ss_dssp             HCCSCHHHHHHHHHHHHHHHTT
T ss_pred             cCCCcHHHHHHHHHHHHHHhcc
Confidence               2468999999999998763

>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}

Probab=96.90  E-value=0.0057  Score=68.08  Aligned_cols=231  Identities=14%  Similarity=0.115  Sum_probs=146.7

Q ss_pred             hhcCCCC--hHHHHHHHHHHHHHhCC----------cCcHH-----HHHHhhhhcCCCCC-hHHHHHHHHHHHHHHHHcc
Q 046417           28 NKLADRD--TLPVATAELESIARTLT----------QDSFS-----SFLNCLQTTDSSSK-SPVRKQCVNLLTLLSRSHG   89 (595)
Q Consensus        28 ~KL~DrD--T~r~A~~~LD~lA~~L~----------~~~lp-----~fL~~L~d~~ss~k-p~vRKaaI~lLG~lAEg~g   89 (595)
                      ..|-|..  +++-|+-.|..+.+.-+          .+..-     ..|..+.|+.++.- .++|+.|.-+||.+  .|.
T Consensus       181 ~DLFdp~WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLGaL--~hL  258 (800)
T 3oc3_A          181 DNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLSRI--YPL  258 (800)
T ss_dssp             HHTTCSSHHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHHHH--TTT
T ss_pred             HHhcCcchhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHHHHHHHHHH--HhC
Confidence            3444443  77888888888776653          12222     23344455544332 59999999999998  553


Q ss_pred             -ccchhhHHHHHHHHHhhccCCChhHHHHHHHHHHHhhhhhcCCcchhccHHHHHHHhhcCChhHHHHHHHHHHHHHhcC
Q 046417           90 -DSLSPHLSKMISTVSCRLRDPDSSVRSACVAATTAMSLNITKPSFSVLSKPLIELILVEQDVNSQVGGAMCLAAAIDAA  168 (595)
Q Consensus        90 -d~I~PhLpkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~~~~~~~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a  168 (595)
                       +.     -+++-.+++.+..+...||....-+|--+.+.+ .. +..+++.++.+| .|.+--|+..||.+|.-+.  .
T Consensus       259 p~e-----~~IL~qLV~~l~~~~WEVRHGGLLGLKYL~DLL-~~-Ld~Vv~aVL~GL-~D~DDDVRAVAAetLiPIA--~  328 (800)
T 3oc3_A          259 IGP-----NDIIEQLVGFLDSGDWQVQFSGLIALGYLKEFV-ED-KDGLCRKLVSLL-SSPDEDIKLLSAELLCHFP--I  328 (800)
T ss_dssp             SCS-----CCHHHHHTTGGGCSCHHHHHHHHHHHHHTGGGC-CC-HHHHHHHHHHHT-TCSSHHHHHHHHHHHTTSC--C
T ss_pred             Chh-----HHHHHHHHhhcCCCCeeehhhhHHHHHHHHHHH-HH-HHHHHHHHHhhc-CCcccHHHHHHHHHhhhhc--c
Confidence             33     356666667888889999999988887663322 22 223555566666 6888889988888776665  2


Q ss_pred             CCchHHHHHHHHHHHHHhhcc--CchhHHHHHHHHHHHHHHhhcccCcCcHHhHHHHHHHhccCCCHHHHHHHHHHHHHH
Q 046417          169 PNPEVEQLRKLLPRLGKAVRI--EGFKAKAAVLGVIGSVVRVGGARSKGVLDWLVPCLVEFLCCDDWATRKAAAEVLGKV  246 (595)
Q Consensus       169 ~d~~~~~L~~Ll~rL~klL~~--~~~kaK~alLsAIgSlA~a~g~~~~~yl~~lmp~L~e~L~~dDW~~RkaAaEaLgsI  246 (595)
                      +    ..++.|+..+-.+|.+  +-.-....+++.++.+..-...+..  .+.++|.|-.|+.+.--.+|++++.+|.++
T Consensus       329 p----~~l~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~a~~--dp~LVPRL~PFLRHtITSVR~AVL~TL~tf  402 (800)
T 3oc3_A          329 T----DSLDLVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPELSI--PPERLKDIFPCFTSPVPEVRTSILNMVKNL  402 (800)
T ss_dssp             S----STHHHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTTCCC--CSGGGGGTGGGGTCSSHHHHHHHHHHTTTC
T ss_pred             h----hhHHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCccccc--ChHHHHHHHhhhcCCcHHHHHHHHHHHHHH
Confidence            2    2455555555555542  2222345677888887764432211  138999999999999999999999999887


Q ss_pred             HHHhHHhHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHhH
Q 046417          247 AVFDKDLATEYKRSCLAALETRRFDKVKIVRETMNRSLEMWK  288 (595)
Q Consensus       247 A~avge~f~py~~~~I~~Le~crfDKVK~VRda~~~aL~~~K  288 (595)
                      .  .++.+.-       ++++.-++.-.-||+.   ++++|+
T Consensus       403 L--~~~~LRL-------IFQNILLE~neeIl~l---S~~VWk  432 (800)
T 3oc3_A          403 S--EESIDFL-------VAEVVLIEEKDEIREM---AIKLLK  432 (800)
T ss_dssp             C--CHHHHHH-------HHHHHHHCSCHHHHHH---HHHHHH
T ss_pred             H--hhhHHHH-------HHHHHHhCCcHHHHHH---HHHHHH
Confidence            6  3333331       2333333444455544   677786

>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A

Probab=96.57  E-value=0.011  Score=70.48  Aligned_cols=154  Identities=8%  Similarity=-0.026  Sum_probs=106.0

Q ss_pred             HHHHHHHhhccC--CChhHHHHHHHHHHHhhhhhcCCcchhccHHHHHHHhh--c--C---Chh-HHHHHHHHHHHHHhc
Q 046417           98 KMISTVSCRLRD--PDSSVRSACVAATTAMSLNITKPSFSVLSKPLIELILV--E--Q---DVN-SQVGGAMCLAAAIDA  167 (595)
Q Consensus        98 kIL~~IvrrLkD--~ds~VR~Ac~~aLg~LA~~l~~~~~~~~l~PLi~aLl~--d--~---nk~-VQ~~AA~cLaaviE~  167 (595)
                      .|++.+.+.+..  ++...++|+||++|++|..+..+.+..+++.++..|++  +  .   +|. +....++.+....+.
T Consensus       477 i~~~~l~~~~~~~~~sW~~lea~~~aigaIag~~~~~~E~~~Lp~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~w  556 (1073)
T 3gjx_A          477 IMTKKLQNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRF  556 (1073)
T ss_dssp             HHHHHHHHHHTSCCCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHH
T ss_pred             HHHHHHHHHhcCCCCCHHHHhHHHHHHHHHHCcCCcccccchHHHHHHHHhcccccccccchhHHHHHHHHHHHhhhHHH
Confidence            445555544443  44678999999999999755321122467777777763  1  1   122 233334455555555


Q ss_pred             CCCchHHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHhhcccC--------cCcHHhHHHHHHHhccCCCHHHHHHH
Q 046417          168 APNPEVEQLRKLLPRLGKAVRIEGFKAKAAVLGVIGSVVRVGGARS--------KGVLDWLVPCLVEFLCCDDWATRKAA  239 (595)
Q Consensus       168 a~d~~~~~L~~Ll~rL~klL~~~~~kaK~alLsAIgSlA~a~g~~~--------~~yl~~lmp~L~e~L~~dDW~~RkaA  239 (595)
                      ... -..||..++..|+..+...+-.++.++.+|+..|....+..+        .||++.++..+......=+-......
T Consensus       557 l~~-h~~~L~~vl~~L~~~m~~~~~~vq~aA~~af~~i~~~C~~~lv~~~~~e~~p~i~~il~~~~~~~~~l~~~~~~~l  635 (1073)
T 3gjx_A          557 LRA-HWKFLKTVVNKLFEFMHETHDGVQDMACDTFIKIAQKCRRHFVQVQVGEVMPFIDEILNNINTIICDLQPQQVHTF  635 (1073)
T ss_dssp             HHH-CHHHHHHHHHHHHHHTTCCSTTHHHHHHHHHHHHHHHTGGGGTSCCTTCSSCHHHHHHTSHHHHHTTCCHHHHHHH
T ss_pred             HHh-CHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHhcCHHHHHHH
Confidence            321 136999999999999988888889999999999998665432        46888888777777666556677889


Q ss_pred             HHHHHHHHHHhHH
Q 046417          240 AEVLGKVAVFDKD  252 (595)
Q Consensus       240 aEaLgsIA~avge  252 (595)
                      .|++|.|+.+++.
T Consensus       636 yeav~~vi~~~p~  648 (1073)
T 3gjx_A          636 YEAVGYMIGAQTD  648 (1073)
T ss_dssp             HHHHHHHHTTCCC
T ss_pred             HHHHHHHHHhCCC
Confidence            9999999998863

>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5

Probab=96.57  E-value=0.00092  Score=67.00  Aligned_cols=129  Identities=18%  Similarity=0.066  Sum_probs=73.5

Q ss_pred             hhhcCCCCChHHHHHHHHHHHHHHHHccccchhhHHHHHHHHHhhccCCChhHHHHHHHHHHHhhhhhc----CCc--ch
Q 046417           62 LQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPHLSKMISTVSCRLRDPDSSVRSACVAATTAMSLNIT----KPS--FS  135 (595)
Q Consensus        62 L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~PhLpkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~----~~~--~~  135 (595)
                      |.....++++.+|.++...|       +    +      ..+...++|+++.||.+++..+   ...+.    +.+  .+
T Consensus       103 L~~ll~D~d~~VR~~aA~~l-------~----~------~~L~~L~~D~d~~VR~~aA~~l---~~~~l~~l~~D~d~~V  162 (244)
T 1lrv_A          103 LSALMFDEDREVRITVADRL-------P----L------EQLEQMAADRDYLVRAYVVQRI---PPGRLFRFMRDEDRQV  162 (244)
T ss_dssp             GGGTTTCSCHHHHHHHHHHS-------C----T------GGGGGGTTCSSHHHHHHHHHHS---CGGGGGGTTTCSCHHH
T ss_pred             HHHHHcCCCHHHHHHHHHhC-------C----H------HHHHHHHcCCCHHHHHHHHHhc---CHHHHHHHHcCCCHHH
Confidence            33434556788887777643       1    0      1345557788888877776532   11110    000  00


Q ss_pred             ------hccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHhh
Q 046417          136 ------VLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNPEVEQLRKLLPRLGKAVRIEGFKAKAAVLGVIGSVVRVG  209 (595)
Q Consensus       136 ------~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d~~~~~L~~Ll~rL~klL~~~~~kaK~alLsAIgSlA~a~  209 (595)
                            ....+++..|+.|.+..|...++..|       +          .+.|..+++++...++.+++..++      
T Consensus       163 R~~aa~~l~~~ll~~ll~D~d~~VR~aaa~~l-------~----------~~~L~~Ll~D~d~~VR~~aa~~l~------  219 (244)
T 1lrv_A          163 RKLVAKRLPEESLGLMTQDPEPEVRRIVASRL-------R----------GDDLLELLHDPDWTVRLAAVEHAS------  219 (244)
T ss_dssp             HHHHHHHSCGGGGGGSTTCSSHHHHHHHHHHC-------C----------GGGGGGGGGCSSHHHHHHHHHHSC------
T ss_pred             HHHHHHcCCHHHHHHHHcCCCHHHHHHHHHhC-------C----------HHHHHHHHcCCCHHHHHHHHHcCC------
Confidence                  02223333444555555555555432       0          145677789999999988766543      


Q ss_pred             cccCcCcHHhHHHHHHHhccCCCHHHHHHHHHHHHH
Q 046417          210 GARSKGVLDWLVPCLVEFLCCDDWATRKAAAEVLGK  245 (595)
Q Consensus       210 g~~~~~yl~~lmp~L~e~L~~dDW~~RkaAaEaLgs  245 (595)
                                 .+.|..+ .|++|.+|.+|++.||.
T Consensus       220 -----------~~~L~~L-~D~~~~VR~aa~~~L~~  243 (244)
T 1lrv_A          220 -----------LEALREL-DEPDPEVRLAIAGRLGI  243 (244)
T ss_dssp             -----------HHHHHHC-CCCCHHHHHHHHCCC--
T ss_pred             -----------HHHHHHc-cCCCHHHHHHHHHHhCC
Confidence                       2455555 89999999999998763

>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}

Probab=96.38  E-value=0.031  Score=55.96  Aligned_cols=131  Identities=7%  Similarity=-0.047  Sum_probs=87.4

Q ss_pred             HHHHhhhc--CCCChHHHHHHHHHHHHHhCCcCcHHHHHHhhhh-cCCCCChHHHHHHHHHHHHHHH-HccccchhhHHH
Q 046417           23 VITCLNKL--ADRDTLPVATAELESIARTLTQDSFSSFLNCLQT-TDSSSKSPVRKQCVNLLTLLSR-SHGDSLSPHLSK   98 (595)
Q Consensus        23 vl~~L~KL--~DrDT~r~A~~~LD~lA~~L~~~~lp~fL~~L~d-~~ss~kp~vRKaaI~lLG~lAE-g~gd~I~PhLpk   98 (595)
                      ++....+|  +|.|+.|+.+..|  |+.. .  .....|+.|.+ ....+.|.+|+.+..+|+.++. ..++.       
T Consensus        72 ~~~la~~L~~~~~deVR~~Av~l--Lg~~-~--~~~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe~-------  139 (240)
T 3l9t_A           72 IKKLAFLAYQSDVYQVRMYAVFL--FGYL-S--KDKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYKK-------  139 (240)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHH--HHHT-T--TSHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTTT-------
T ss_pred             HHHHHHHHHhCcchHHHHHHHHH--HHhc-c--CcHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHHH-------
Confidence            34455555  3556777655553  3333 2  23455555554 3345569999999999999997 55663       


Q ss_pred             HHHHHHhhccCCChhHHHHHHHHHHHhhhhhcCCcchhccHHHHHHHhhcCChhHHHHHHHHHHHHH
Q 046417           99 MISTVSCRLRDPDSSVRSACVAATTAMSLNITKPSFSVLSKPLIELILVEQDVNSQVGGAMCLAAAI  165 (595)
Q Consensus        99 IL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~~~~~~~~l~PLi~aLl~d~nk~VQ~~AA~cLaavi  165 (595)
                      +++.+..-++|++..||.++...+--.+...........+.|+++.|..|.+.+||.+-+.+|--+-
T Consensus       140 ~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~~~~k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~S  206 (240)
T 3l9t_A          140 ALPIIDEWLKSSNLHTRRAATEGLRIWTNRPYFKENPNEAIRRIADLKEDVSEYVRKSVGNALRDIS  206 (240)
T ss_dssp             THHHHHHHHHCSSHHHHHHHHHHTCSGGGSTTTTTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHhhHHHhccchhhcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHh
Confidence            4557778889999999999988765433221001111367788888888999999999888776544

>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6

Probab=96.10  E-value=0.017  Score=68.52  Aligned_cols=154  Identities=17%  Similarity=0.148  Sum_probs=108.1

Q ss_pred             HHHHHHHHHHhC-CcCcHHHHHHhhhhcCC-CCChHHHHHHHHHHHHHHHHccccc-hhhHHHHHHHHHhhccCCC-hhH
Q 046417           39 ATAELESIARTL-TQDSFSSFLNCLQTTDS-SSKSPVRKQCVNLLTLLSRSHGDSL-SPHLSKMISTVSCRLRDPD-SSV  114 (595)
Q Consensus        39 A~~~LD~lA~~L-~~~~lp~fL~~L~d~~s-s~kp~vRKaaI~lLG~lAEg~gd~I-~PhLpkIL~~IvrrLkD~d-s~V  114 (595)
                      |...|..|+..+ +++.++.++..|.+... ++.| +|..++..+-++.-.+.=.+ ...-.+|+.+++..|.|+. ..|
T Consensus       782 a~~~l~~ls~~~~~~~~~~~~l~~l~~~~~~s~sW-~R~~~L~~lq~~~f~n~f~l~~~~~~~i~~~v~~~L~D~q~~EV  860 (997)
T 1vsy_5          782 PVRLYAGLGYMPIRKNHVAAIVDYVCSSNVALSSN-QTKLQLAFIQHFLSAELLQLTEEEKNKILEFVVSNLYNEQFVEV  860 (997)
T ss_dssp             SHHHHHHTSSSCCCHHHHHHHHHHSSCTTTTSCSS-SHHHHHHHHHHHHHHHTTTSCTTHHHHTHHHHTTTTTCSSCHHH
T ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCcH-HHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHhcCCccHHH
Confidence            555677776554 45569999999988765 5789 99999888877777664333 2344689999999999999 999


Q ss_pred             HHHHHHHHHHhhhhhcCCcchhccHHHHHHHhhcCCh---------------hHHHHHHHHHHHHHhcCCCch--HHHHH
Q 046417          115 RSACVAATTAMSLNITKPSFSVLSKPLIELILVEQDV---------------NSQVGGAMCLAAAIDAAPNPE--VEQLR  177 (595)
Q Consensus       115 R~Ac~~aLg~LA~~l~~~~~~~~l~PLi~aLl~d~nk---------------~VQ~~AA~cLaaviE~a~d~~--~~~L~  177 (595)
                      |+.|+.+|+-|-.....   ......++..+...-.+               ...-+|.++|.++|.+.|...  .++++
T Consensus       861 Re~Aa~tLsgll~c~~~---~~~~~~li~~f~~~~~~~~~~~~~~~~~~~~~~~rH~aVLgL~AlV~a~Py~vP~P~w~P  937 (997)
T 1vsy_5          861 RVRAASILSDIVHNWKE---EQPLLSLIERFAKGLDVNKYTSKERQKLSKTDIKIHGNVLGLGAIISAFPYVFPLPPWIP  937 (997)
T ss_dssp             HHHHHHHHHHHHHSCCS---HHHHHHHHHHHTTSSTTTSSCHHHHHHHHHHCHHHHHHHHHHHHHHTTCSCCSSCCTHHH
T ss_pred             HHHHHHHHHHHHHcCCc---hhhHHHHHHHHHHHHhhcccccccccccchHHHHHHHHHHHHHHHHhhCCCCCCCCcccH
Confidence            99999999988754301   01122333333211101               234688999999999987664  57999


Q ss_pred             HHHHHHHHhhccCchhHHHH
Q 046417          178 KLLPRLGKAVRIEGFKAKAA  197 (595)
Q Consensus       178 ~Ll~rL~klL~~~~~kaK~a  197 (595)
                      +++..|.....++.. ++..
T Consensus       938 ~~l~~La~~~~~~~~-i~~t  956 (997)
T 1vsy_5          938 KNLSNLSSWARTSGM-TGNA  956 (997)
T ss_dssp             HHHHHHHTTSSSCSS-HHHH
T ss_pred             HHHHHHHHHhCCCCc-hHHH
Confidence            999999988877643 4443

>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}

Probab=96.10  E-value=0.13  Score=51.50  Aligned_cols=147  Identities=10%  Similarity=-0.068  Sum_probs=106.0

Q ss_pred             HHHHHHHHHhhccCCChhHHHHHHHHHHHhhhhhcCCcchhccHHHHHH-HhhcCChhHHHHHHHHHHHHHhc-CCCchH
Q 046417           96 LSKMISTVSCRLRDPDSSVRSACVAATTAMSLNITKPSFSVLSKPLIEL-ILVEQDVNSQVGGAMCLAAAIDA-APNPEV  173 (595)
Q Consensus        96 LpkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~~~~~~~~l~PLi~a-Ll~d~nk~VQ~~AA~cLaaviE~-a~d~~~  173 (595)
                      ++.+++......+|+.=.||-.+++.||++ ...      .-+.|++.. +..+.+=.|+..+|.++..++.. -++   
T Consensus        69 ~~~~~~la~~L~~~~~deVR~~Av~lLg~~-~~~------~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe---  138 (240)
T 3l9t_A           69 GEYIKKLAFLAYQSDVYQVRMYAVFLFGYL-SKD------KEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYK---  138 (240)
T ss_dssp             HHHHHHHHHHHHTCSSHHHHHHHHHHHHHT-TTS------HHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTT---
T ss_pred             HHHHHHHHHHHHhCcchHHHHHHHHHHHhc-cCc------HHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHH---
Confidence            667888888888888779999999999988 311      123455554 44577778999999999988863 333   


Q ss_pred             HHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHhhcccCcCcHHhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhHHh
Q 046417          174 EQLRKLLPRLGKAVRIEGFKAKAAVLGVIGSVVRVGGARSKGVLDWLVPCLVEFLCCDDWATRKAAAEVLGKVAVFDKDL  253 (595)
Q Consensus       174 ~~L~~Ll~rL~klL~~~~~kaK~alLsAIgSlA~a~g~~~~~yl~~lmp~L~e~L~~dDW~~RkaAaEaLgsIA~avge~  253 (595)
                          .+++.+.....++++.+|-+++..+.-.+  ....+....+.++|.|.....|+++-+||+.+-.|.-++..-.+.
T Consensus       139 ----~~l~~~~~W~~d~n~~VRR~Ase~~rpW~--~~~~~k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~Pd~  212 (240)
T 3l9t_A          139 ----KALPIIDEWLKSSNLHTRRAATEGLRIWT--NRPYFKENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKKFPDL  212 (240)
T ss_dssp             ----TTHHHHHHHHHCSSHHHHHHHHHHTCSGG--GSTTTTTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTCHHH
T ss_pred             ----HHHHHHHHHhcCCCHHHHHHHHHhhHHHh--ccchhhcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhCHHH
Confidence                25566778889999999887765543211  011234445678899988889999999999999999888776666


Q ss_pred             HHHHH
Q 046417          254 ATEYK  258 (595)
Q Consensus       254 f~py~  258 (595)
                      +..|.
T Consensus       213 V~~~~  217 (240)
T 3l9t_A          213 VKIEL  217 (240)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            55543

>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}

Probab=96.05  E-value=1.4  Score=44.24  Aligned_cols=162  Identities=17%  Similarity=0.172  Sum_probs=100.9

Q ss_pred             hhHHHHHHHHHhhhcCC-CChHHH-HHHHHHHHHHhCCcCcHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccch
Q 046417           16 TNDLKQRVITCLNKLAD-RDTLPV-ATAELESIARTLTQDSFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLS   93 (595)
Q Consensus        16 ~~~lk~rvl~~L~KL~D-rDT~r~-A~~~LD~lA~~L~~~~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~   93 (595)
                      ...-+-|++.-|+.-.. .|..++ .+..+..++.+-+|..++.||+.+.+...+....+||.++.-++.++.-..    
T Consensus        10 ~~~~~~~v~~lln~A~~~~~~~kl~~L~qa~el~~~~dp~ll~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k~----   85 (257)
T 3gs3_A           10 TATARAKVVDWCNELVIASPSTKCELLAKVQETVLGSCAELAEEFLESVLSLAHDSNMEVRKQVVAFVEQVCKVKV----   85 (257)
T ss_dssp             HHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTTTTGGGHHHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCG----
T ss_pred             cccHHHHHHHHHHHhhhcCcHHHHHHHHHHHHHHHccCHhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHH----
Confidence            45677888888887643 222333 444555555555677899999999887666678999999988777765544    


Q ss_pred             hhHHHHHHHHHhhccCCChhHHHHHHHHHHHhhhhhcCCcchhccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCCCchH
Q 046417           94 PHLSKMISTVSCRLRDPDSSVRSACVAATTAMSLNITKPSFSVLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNPEV  173 (595)
Q Consensus        94 PhLpkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~~~~~~~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d~~~  173 (595)
                      .+++++++.+...|+|.|+.|-.-+..+.+.+            ++-++..+..  ++++....-.            .-
T Consensus        86 ~l~~~~l~~L~~Ll~d~d~~V~K~~I~~~~~i------------Y~~~l~~i~~--~~~~~~~~~~------------~W  139 (257)
T 3gs3_A           86 ELLPHVINVVSMLLRDNSAQVIKRVIQACGSI------------YKNGLQYLCS--LMEPGDSAEQ------------AW  139 (257)
T ss_dssp             GGHHHHHHHHHHHTTCSCHHHHHHHHHHHHHH------------HHHHHHHHTT--SSSCCHHHHH------------HH
T ss_pred             HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH------------HHHHHHHHhc--CCCCcchHHH------------HH
Confidence            37778899999999999998855555443332            2333333321  1111100000            01


Q ss_pred             HHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHH
Q 046417          174 EQLRKLLPRLGKAVRIEGFKAKAAVLGVIGSVVR  207 (595)
Q Consensus       174 ~~L~~Ll~rL~klL~~~~~kaK~alLsAIgSlA~  207 (595)
                      ..+..+-.+++.++++.+..+|..++-.+..++.
T Consensus       140 ~~m~~lK~~Il~~~~s~n~gvkl~~iKF~e~vIl  173 (257)
T 3gs3_A          140 NILSLIKAQILDMIDNENDGIRTNAIKFLEGVVV  173 (257)
T ss_dssp             HHHHHHHHHHHHGGGSSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHH
Confidence            2444555666666666677777777766666653

>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*

Probab=95.99  E-value=0.71  Score=49.19  Aligned_cols=205  Identities=15%  Similarity=0.178  Sum_probs=128.4

Q ss_pred             hHHHHHHHHHhhhc---CCCChHHHHHHHHHHHHHhCCcCcHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccch
Q 046417           17 NDLKQRVITCLNKL---ADRDTLPVATAELESIARTLTQDSFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLS   93 (595)
Q Consensus        17 ~~lk~rvl~~L~KL---~DrDT~r~A~~~LD~lA~~L~~~~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~   93 (595)
                      ..-+-|++..|+.-   +| |..=.-+..+..|+.+-+|+.++-||+.|.+...+++..+||.++--++..+....+   
T Consensus        21 ~~~~~~v~~lln~A~~~~~-~~Kl~~L~q~~EL~l~~dpsLl~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~~~e---   96 (386)
T 3o2t_A           21 MTTSERVVDLLNQAALITN-DSKITVLKQVQELIINKDPTLLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKRDIE---   96 (386)
T ss_dssp             CCHHHHHHHHHHHHHHCCS-THHHHHHHHHHHHHHTTCGGGGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGG---
T ss_pred             ccHHHHHHHHHHhhhccCh-HHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHH---
Confidence            34567788777766   33 333335566666666667888999999999877777889999999987776654444   


Q ss_pred             hhHHHHHHHHHhhccCCChhHHHHHHHHHHHhh----hhhcCCcc------h-----hccHHHHHHHhhcCChhHHHHHH
Q 046417           94 PHLSKMISTVSCRLRDPDSSVRSACVAATTAMS----LNITKPSF------S-----VLSKPLIELILVEQDVNSQVGGA  158 (595)
Q Consensus        94 PhLpkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA----~~l~~~~~------~-----~~l~PLi~aLl~d~nk~VQ~~AA  158 (595)
                       +++++++.+...|+|.|+.|-..+..+.+.+=    +|++..+.      .     ..++--+-.++...+..|...+.
T Consensus        97 -l~~~~l~~L~~LL~d~d~~V~K~~I~~~tslYpl~f~~i~~~~~~~~~~e~~W~~m~~lK~~Il~~~ds~n~GVrl~ai  175 (386)
T 3o2t_A           97 -LLLKLIANLNMLLRDENVNVVKKAILTMTQLYKVALQWMVKSRVISELQEACWDMVSAMAGDIILLLDSDNDGIRTHAI  175 (386)
T ss_dssp             -GHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHGGGCSSHHHHHHHH
T ss_pred             -HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhccCCcchHHHHH
Confidence             57899999999999999998666665655544    44432221      1     12222222233345666776666


Q ss_pred             HHHHHHHhc-C---CCc--------------------h--HHHH----HHHHHHHHHhhccCchhHHHHHHHHHHHHHHh
Q 046417          159 MCLAAAIDA-A---PNP--------------------E--VEQL----RKLLPRLGKAVRIEGFKAKAAVLGVIGSVVRV  208 (595)
Q Consensus       159 ~cLaaviE~-a---~d~--------------------~--~~~L----~~Ll~rL~klL~~~~~kaK~alLsAIgSlA~a  208 (595)
                      =-+..+|-. .   .+.                    .  .+.|    ..++.+|++.|..+.... ..+..+|++++..
T Consensus       176 KFle~VIl~qS~~~~d~~~p~~~~~d~SL~~VP~nHp~L~~~~Le~EA~~lLd~LL~~l~~~~iss-~~l~a~lnsLa~I  254 (386)
T 3o2t_A          176 KFVEGLIVTLSPRMADSEIPRRQEHDISLDRIPRDHPYIQYNVLWEEGKAALEQLLKFMVHPAISS-INLTTALGSLANI  254 (386)
T ss_dssp             HHHHHHHHHTSCCCTTCCCCGGGTTSCCGGGSCTTCSSSCHHHHHHHHHHHHHHHHHHTTC--CCH-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCCCCcccccccCCCCCHhhCCCCCCcCCHHHHHHHHHHHHHHHHHHHccccccc-HHHHHHHHHHHHH
Confidence            666776632 1   010                    0  1122    258889999997654322 3444667777665


Q ss_pred             hcccCcCcHHhHHHHHHHhc
Q 046417          209 GGARSKGVLDWLVPCLVEFL  228 (595)
Q Consensus       209 ~g~~~~~yl~~lmp~L~e~L  228 (595)
                      +..- +.|+..+++.|..+-
T Consensus       255 ak~R-P~~~~rIl~aL~~l~  273 (386)
T 3o2t_A          255 ARQR-PMFMSEVIQAYETLH  273 (386)
T ss_dssp             HHHS-GGGHHHHHHHHHHHH
T ss_pred             HHhc-HHHHHHHHHHHHhhc
Confidence            5543 677888888887653

>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}

Probab=95.88  E-value=0.42  Score=57.57  Aligned_cols=179  Identities=12%  Similarity=0.005  Sum_probs=119.6

Q ss_pred             hHHHHHHHHHHHHHHHHccccchhhHHHHHHHHHhh-ccCC-------------------Ch--hHHHHHHHHHHHhhhh
Q 046417           71 SPVRKQCVNLLTLLSRSHGDSLSPHLSKMISTVSCR-LRDP-------------------DS--SVRSACVAATTAMSLN  128 (595)
Q Consensus        71 p~vRKaaI~lLG~lAEg~gd~I~PhLpkIL~~Ivrr-LkD~-------------------ds--~VR~Ac~~aLg~LA~~  128 (595)
                      +..|+...-++-.++...++...+++-..+...+.. |...                   .+  ...+|....+..+.+.
T Consensus       437 ~~~Rk~~~d~l~~i~~v~p~~~l~~v~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ea~~~~leav~~~  516 (1204)
T 3a6p_A          437 NSSRAQQGEVMRLACRLDPKTSFQMAGEWLKYQLSTFLDAGSVNSCSAVGTGEGSLCSVFSPSFVQWEAMTLFLESVITQ  516 (1204)
T ss_dssp             HHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHTCC-----------------CCSCSSSHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhhhhcccccccccccccccccccCcCCHHHHHHHHHHHHHHHHHHH
Confidence            367999999999999999876665443333222221 1111                   11  2356655556655544


Q ss_pred             hcC----Ccch-hccHHHHHHHhh--cCChhHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhcc------------
Q 046417          129 ITK----PSFS-VLSKPLIELILV--EQDVNSQVGGAMCLAAAIDAAPNPEVEQLRKLLPRLGKAVRI------------  189 (595)
Q Consensus       129 l~~----~~~~-~~l~PLi~aLl~--d~nk~VQ~~AA~cLaaviE~a~d~~~~~L~~Ll~rL~klL~~------------  189 (595)
                      +.+    +... ..+..|+..|+.  ..++.+...+..|+.++.+..... .++|+.++..|+..+..            
T Consensus       517 ~~~~~e~~~l~~~~~~~Ll~~ll~~~~~~p~l~~~~i~~l~~l~~~~~~~-p~~L~~vL~~ll~~l~~~~~~~~~~~~~~  595 (1204)
T 3a6p_A          517 MFRTLNREEIPVNDGIELLQMVLNFDTKDPLILSCVLTNVSALFPFVTYR-PEFLPQVFSKLFSSVTFETVEESKAPRTR  595 (1204)
T ss_dssp             HHHHSCTTCCCHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHGGGGGTC-GGGHHHHHHHHHHHHHCCTTCSTTSCCCH
T ss_pred             HhcccccccccHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHhcC-chHHHHHHHHHHHhhccCCcccccccccH
Confidence            411    1111 246678887764  357778888999999988884332 26889999998888755            


Q ss_pred             CchhHHHHHHHHHHHHHHhhcccCcCcHHhHHHHHHHhccCCC---HHHHHHHHHHHHHHHHHh
Q 046417          190 EGFKAKAAVLGVIGSVVRVGGARSKGVLDWLVPCLVEFLCCDD---WATRKAAAEVLGKVAVFD  250 (595)
Q Consensus       190 ~~~kaK~alLsAIgSlA~a~g~~~~~yl~~lmp~L~e~L~~dD---W~~RkaAaEaLgsIA~av  250 (595)
                      ....++.++-.++..++...+..+.||++.+...+...+....   -..+....|+|+.||..+
T Consensus       596 ~~k~vr~~a~~al~~L~~~~~~~L~p~~~~i~~~~~~~l~~~~~l~~~e~~~L~eal~~ia~~~  659 (1204)
T 3a6p_A          596 AVRNVRRHACSSIIKMCRDYPQLVLPNFDMLYNHVKQLLSNELLLTQMEKCALMEALVLISNQF  659 (1204)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHHSTTTSCHHHHHHHHHHHHHHHGGG
T ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhCcccccHHHHHHHHHHHHHHhccC
Confidence            2235777777888888887777778999999999999886433   677888999999997543

>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A

Probab=95.71  E-value=0.34  Score=54.84  Aligned_cols=229  Identities=14%  Similarity=0.108  Sum_probs=138.6

Q ss_pred             HHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccchhhHH---HHHHHHHhhccCCChhHHHHHHHHHHHhhhhhcC
Q 046417           55 FSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPHLS---KMISTVSCRLRDPDSSVRSACVAATTAMSLNITK  131 (595)
Q Consensus        55 lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~PhLp---kIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~~  131 (595)
                      ++.++.+|    .+.+-.+|-.++.+|.+++...++.....+-   .-++.++..|.|+...||..+.-.|..|+..-.+
T Consensus       124 i~~Ll~lL----~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n~~  199 (651)
T 3grl_A          124 VTLLLSLL----EEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSNGA  199 (651)
T ss_dssp             HHHHHHHT----TCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHh----cCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcCCHH
Confidence            55555555    3467899999999999999999875544433   5689999999999999999999888888865421


Q ss_pred             -Ccchh---ccHHHHHHHhhcCC---hhHHHHHHHHHHHHHhcCCCchHHHHHH--HHHHHHHhhccC-------chhHH
Q 046417          132 -PSFSV---LSKPLIELILVEQD---VNSQVGGAMCLAAAIDAAPNPEVEQLRK--LLPRLGKAVRIE-------GFKAK  195 (595)
Q Consensus       132 -~~~~~---~l~PLi~aLl~d~n---k~VQ~~AA~cLaaviE~a~d~~~~~L~~--Ll~rL~klL~~~-------~~kaK  195 (595)
                       +..++   .|.+||..+-.+..   -.|......+|..+...-. .--.|+.+  .+++|.++|+.+       .-+.+
T Consensus       200 iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~-sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~  278 (651)
T 3grl_A          200 IQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNN-SNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVT  278 (651)
T ss_dssp             HHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCH-HHHHHHHHTTCGGGGGGGGCCCSCSSCCCHHHHH
T ss_pred             HHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCH-HHHHHHHHcCCHHHHHHHhCCCccccccHHHHHH
Confidence             12222   48889888854432   1233333444666665410 01134443  667777887532       11333


Q ss_pred             H--HHHHHHHHHHHhhcc-----cCcCcH--HhHHHHHHHhccCC--CHHHHHHHHHHHHHHHHHhH---HhHHHHH---
Q 046417          196 A--AVLGVIGSVVRVGGA-----RSKGVL--DWLVPCLVEFLCCD--DWATRKAAAEVLGKVAVFDK---DLATEYK---  258 (595)
Q Consensus       196 ~--alLsAIgSlA~a~g~-----~~~~yl--~~lmp~L~e~L~~d--DW~~RkaAaEaLgsIA~avg---e~f~py~---  258 (595)
                      +  .++.+|+.+...++.     .....+  ..+++.|.+++...  .-.+|..|+-+++.+...-.   +.|+.+.   
T Consensus       279 N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~~~Q~~fa~~~vp~  358 (651)
T 3grl_A          279 NLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVSEVIRGCQVNQDYFASVNAPS  358 (651)
T ss_dssp             HHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHCEESS
T ss_pred             HHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCHHHHHHHhhccCCC
Confidence            3  245667766543221     001111  23678888888754  45677766666666544221   3444321   


Q ss_pred             ----HHHHHHHHhccCCch-HHHHHHHHHHHHHhH
Q 046417          259 ----RSCLAALETRRFDKV-KIVRETMNRSLEMWK  288 (595)
Q Consensus       259 ----~~~I~~Le~crfDKV-K~VRda~~~aL~~~K  288 (595)
                          +.++..|-..-.+|- -.+|-++...++.+-
T Consensus       359 ~~~~p~li~lL~~~~~~~~~~~lR~Aa~~cl~ay~  393 (651)
T 3grl_A          359 NPPRPAIVVLLMSMVNERQPFVLRCAVLYCFQCFL  393 (651)
T ss_dssp             SSCEEHHHHHHHHHTCTTSCHHHHHHHHHHHHHHH
T ss_pred             CCCcChHHHHHHHHhcccccHHHHHHHHHHHHHHH
Confidence                344554444434444 778988888887775

>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}

Probab=95.68  E-value=0.27  Score=49.43  Aligned_cols=178  Identities=11%  Similarity=0.042  Sum_probs=124.2

Q ss_pred             HHHHHHHhhccCCChhHHHHHHHHHHHhhhhhcCC--cch--hccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCCCchH
Q 046417           98 KMISTVSCRLRDPDSSVRSACVAATTAMSLNITKP--SFS--VLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNPEV  173 (595)
Q Consensus        98 kIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~~~--~~~--~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d~~~  173 (595)
                      ..+..+...|.|-|+.|+..+..+++.+-....+.  ...  -+|.-++..+ .+.|..+-..|.-||..++|+.+-. .
T Consensus        33 ~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~ll-k~~dEkval~A~r~L~~LLe~vpL~-~  110 (265)
T 3b2a_A           33 RALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINAL-SQENEKVTIKALRALGYLVKDVPMG-S  110 (265)
T ss_dssp             HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTC-CSTTHHHHHHHHHHHHHHHTTCCBC-H
T ss_pred             hHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHH-hccchhHHHHHHHHHHHHHcCCCCC-H
Confidence            45667888899999999999999999888765211  000  1444444444 4788889999999999999986433 3


Q ss_pred             HHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHhhcccCcCcHHhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhHH-
Q 046417          174 EQLRKLLPRLGKAVRIEGFKAKAAVLGVIGSVVRVGGARSKGVLDWLVPCLVEFLCCDDWATRKAAAEVLGKVAVFDKD-  252 (595)
Q Consensus       174 ~~L~~Ll~rL~klL~~~~~kaK~alLsAIgSlA~a~g~~~~~yl~~lmp~L~e~L~~dDW~~RkaAaEaLgsIA~avge-  252 (595)
                      ..+.+++..|..+++.++--....+.+.+|.+      .-....+.++..|.+.+.+.|-++..+|+-+|-.||..-++ 
T Consensus       111 ~~y~Kl~~aL~dlik~~~~il~~eaae~Lgkl------kv~~~~~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~D~  184 (265)
T 3b2a_A          111 KTFLKAAKTLVSLLESPDDMMRIETIDVLSKL------QPLEDSKLVRTYINELVVSPDLYTKVAGFCLFLNMLNSSADS  184 (265)
T ss_dssp             HHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHC------CBSCCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCSSC
T ss_pred             HHHHHHHHHHHHHhcCCCchHHHHHHHHhCcC------CcccchHHHHHHHHHHHhCCChhHHHHHHHHHHHhhcccCCH
Confidence            57789999999999988777777777777765      11233477888888888999999999999999999986542 


Q ss_pred             -hHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHh
Q 046417          253 -LATEYKRSCLAALETRRFDKVKIVRETMNRSLEMW  287 (595)
Q Consensus       253 -~f~py~~~~I~~Le~crfDKVK~VRda~~~aL~~~  287 (595)
                       .+.+-...+=.+|.+-    =+.+++-+..+|.-+
T Consensus       185 ~i~~~I~~eI~elL~~e----D~~l~e~aLd~Le~i  216 (265)
T 3b2a_A          185 GHLTLILDEIPSLLQND----NEFIVELALDVLEKA  216 (265)
T ss_dssp             CCGGGTTTTHHHHHTCS----CHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCC----CHHHHHHHHHHHHHH
Confidence             2222222222233322    356666655555443

>1vsy_4 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_5

Probab=94.85  E-value=0.6  Score=54.16  Aligned_cols=269  Identities=12%  Similarity=0.080  Sum_probs=160.8

Q ss_pred             hhHHHHHHHHHhhhcC-------CCChHHHHHHHHHHHHHhCC---cCcHHHHHHhhhhcCCC---CChHHHHHHHHHHH
Q 046417           16 TNDLKQRVITCLNKLA-------DRDTLPVATAELESIARTLT---QDSFSSFLNCLQTTDSS---SKSPVRKQCVNLLT   82 (595)
Q Consensus        16 ~~~lk~rvl~~L~KL~-------DrDT~r~A~~~LD~lA~~L~---~~~lp~fL~~L~d~~ss---~kp~vRKaaI~lLG   82 (595)
                      ..+.+.+++.+|-.+.       |.+....+...|..||---|   .-.+|.+|..+..+.++   ..+..-..++++|.
T Consensus       329 t~~~~~~fV~~l~p~~~~g~fSK~~~~~~~~~~~l~~La~l~P~~~~lVlP~vL~r~y~sLe~~~l~e~Hrl~~aL~~l~  408 (799)
T 1vsy_4          329 TSFCHEEIVEIFLNIISLGSQNKNPDIANYYISCFAYLLELDPSNAYLIYDKILIDLYDTLADQFINSRHRIISSLKQFT  408 (799)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHhCcCCcchHHHHHHHHHHHHhcCCCccceehHHHHHHHHHHhccccccchhHHHHHHHHHH
Confidence            4677777777664431       44455888999999998665   44499999999998877   34555567788888


Q ss_pred             HHHHHcc--ccchhhHHHHHHHHHhhccCCChhHHHHHHHHHHHhhhhhc--CC----c---------------------
Q 046417           83 LLSRSHG--DSLSPHLSKMISTVSCRLRDPDSSVRSACVAATTAMSLNIT--KP----S---------------------  133 (595)
Q Consensus        83 ~lAEg~g--d~I~PhLpkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~--~~----~---------------------  133 (595)
                      .++...-  ..-.+|+..||..++..+-=.|+.==.++...+..++.++.  +-    .                     
T Consensus       409 ~~~r~lv~~~~yr~hl~~lL~l~LpgID~ND~~KT~~tl~fi~~i~s~ipi~d~s~~~~~~~~~~~~~~~~~~~~~~l~~  488 (799)
T 1vsy_4          409 RVIRFIVMDKLYRVHITNVLSMLVSKLDMNDTNLTSNLINGIVSIAAFIPIQDLTGEDDYISFESDTLPLVQQHFYHIKC  488 (799)
T ss_dssp             TTHHHHTTSTTGGGHHHHHHHHHHHTCCSSCHHHHHHHHHHHHHHHHTSCBCCCCCCCTTCCHHHHTHHHHHHHHHHHHT
T ss_pred             HHHHHHhcCcccHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHHHhccccccCCcchhhhhhhhhhhhhhhhhhhhcc
Confidence            8887664  34478999999999999988888766677777777765441  00    0                     


Q ss_pred             ------------------------ch----hccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHH
Q 046417          134 ------------------------FS----VLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNPEVEQLRKLLPRLGK  185 (595)
Q Consensus       134 ------------------------~~----~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d~~~~~L~~Ll~rL~k  185 (595)
                                              +.    .|+.-++..+-+..+..+-..-..++..+++.+.+   +++..++.++.+
T Consensus       489 ~~~~~~~~~d~~~~~~~~~~sT~~f~~~v~~f~drvf~llen~~Ee~l~~~l~~~~~~l~~~lS~---~if~~~l~k~~~  565 (799)
T 1vsy_4          489 GESSKTFRVDDELLNNAFKASTTVFQSMLKVYVEKIFQLVDVDLEDSLVTKINQTTMILQESMDD---KIFNYFASLLNR  565 (799)
T ss_dssp             TCCSSSCCCCTTHHHHHHHHHTSTHHHHHHHHHHHHHHHTTSCCCTHHHHHHHHHHHHHHHTBCH---HHHHHHHHHHHH
T ss_pred             ccccccccccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHhCCH---HHHHHHHHHHHH
Confidence                                    00    13333333331122333333333334445554444   566777788888


Q ss_pred             hhccCchh-HHHHHHHH----HHHHHHhhcccCcCcHHhHHHHHHHhcc----C-------------CCHHHHHHHHHHH
Q 046417          186 AVRIEGFK-AKAAVLGV----IGSVVRVGGARSKGVLDWLVPCLVEFLC----C-------------DDWATRKAAAEVL  243 (595)
Q Consensus       186 lL~~~~~k-aK~alLsA----IgSlA~a~g~~~~~yl~~lmp~L~e~L~----~-------------dDW~~RkaAaEaL  243 (595)
                      ...++.+. +..++-..    +++++.+...    .++.++|.|...+.    +             .|-. -.=-+-+|
T Consensus       566 fv~~n~~~~a~~~v~~L~~~~~~a~~~~~P~----~~~~~~p~l~~~i~~~i~~ga~s~rs~~e~~~~D~~-L~w~l~iL  640 (799)
T 1vsy_4          566 NFWSNDSFKEKDPNYELVTIPLAALVRRNNG----LSKELVRTLLFHIKEQIKRGAGSVRSTSEIQQRDVK-LVLYLTAL  640 (799)
T ss_dssp             HHHSCSCCCSSSCCTHHHHHHHHHHHHHCGG----GHHHHHHHHHHHHHHHHHTTTTCSCCSSSCCTTTHH-HHHHHHHH
T ss_pred             HHHHhhhhhHHHHHHHHHHHHHHHHHHhCHH----HHHHHHHHHHHHHHHHHhccccccccccccCcchHH-HHHHHHHH
Confidence            77666443 21121122    3444444322    35556665553331    1             1211 11124455


Q ss_pred             HHHHHHhHHhHHHHHHHHHHHHHhccCCch--HHHHH----HHHHHHHHhHhcCCC
Q 046417          244 GKVAVFDKDLATEYKRSCLAALETRRFDKV--KIVRE----TMNRSLEMWKEVPGV  293 (595)
Q Consensus       244 gsIA~avge~f~py~~~~I~~Le~crfDKV--K~VRd----a~~~aL~~~K~i~~~  293 (595)
                      +.+....|..+-+|...++.++..+ ++|.  +.+-.    .+...|..+-.+...
T Consensus       641 ~~~v~~~g~~lL~y~deL~~il~~~-~~~~k~~~~~~~~~~ll~~lL~sLt~~yp~  695 (799)
T 1vsy_4          641 NDVLRNCHESLLEYSDELITFMKYL-YDNVTNPPLDVITSIVIHSALATLCTTEIT  695 (799)
T ss_dssp             HHHHTTTGGGGGTTHHHHHHHHHHH-HHSCCCHHHHHHHTTHHHHHHHHHHCCBCC
T ss_pred             HHHHhcCcHHHHccHHHHHHHHHHH-HHHhcCcchHHHHHHHHHHHHHHhhheeec
Confidence            5555556788888999988888866 4443  33224    667778888777766

>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A

Probab=93.68  E-value=0.2  Score=56.60  Aligned_cols=146  Identities=14%  Similarity=0.098  Sum_probs=89.8

Q ss_pred             ccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCCCchHH-HH-HHHHH-HHHHhhccCchhHHHHHHHHHHHHHHhhcccC
Q 046417          137 LSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNPEVE-QL-RKLLP-RLGKAVRIEGFKAKAAVLGVIGSVVRVGGARS  213 (595)
Q Consensus       137 ~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d~~~~-~L-~~Ll~-rL~klL~~~~~kaK~alLsAIgSlA~a~g~~~  213 (595)
                      -+.||++-| ...+...+.+||.||..+++...  ... .+ +.++. -|..+|.+++..++.+++++++.++..+|...
T Consensus        35 ~i~Pll~~L-~S~~~~~r~~A~~al~~l~~~~~--~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~  111 (684)
T 4gmo_A           35 KILPVLKDL-KSPDAKSRTTAAGAIANIVQDAK--CRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADF  111 (684)
T ss_dssp             TTHHHHHHH-SSSCCSHHHHHHHHHHHHTTSHH--HHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHH
T ss_pred             hHHHHHHHc-CCCCHHHHHHHHHHHHHHHcCcH--HHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchH
Confidence            467999987 77889999999999999997421  112 22 23444 45668889999999999999999987655332


Q ss_pred             cCcH--HhHHHHHHHhccCC---------------------CHHHHHHHHHHHHHHHHHhHHhHHH-----HHHHHHHHH
Q 046417          214 KGVL--DWLVPCLVEFLCCD---------------------DWATRKAAAEVLGKVAVFDKDLATE-----YKRSCLAAL  265 (595)
Q Consensus       214 ~~yl--~~lmp~L~e~L~~d---------------------DW~~RkaAaEaLgsIA~avge~f~p-----y~~~~I~~L  265 (595)
                      ..++  ..++++|...+...                     -|..-..++-+|..++..-.+.+..     ..+.++..|
T Consensus       112 ~~~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L  191 (684)
T 4gmo_A          112 CVHLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRL  191 (684)
T ss_dssp             HHHHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHH
Confidence            1111  22555555554210                     1333334555666666544333322     234556666


Q ss_pred             HhccCCch-HHHHHHHHHHHHHh
Q 046417          266 ETRRFDKV-KIVRETMNRSLEMW  287 (595)
Q Consensus       266 e~crfDKV-K~VRda~~~aL~~~  287 (595)
                      .+.  |+. .-|+.++.+.|..+
T Consensus       192 ~~~--~~~~~~v~~~a~~~L~~l  212 (684)
T 4gmo_A          192 ISA--DIAPQDIYEEAISCLTTL  212 (684)
T ss_dssp             HHH--CCSCHHHHHHHHHHHHHH
T ss_pred             Hhc--CCCcHHHHHHHHHHHHHH
Confidence            544  443 45777777777654

>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}

Probab=91.74  E-value=2.5  Score=40.92  Aligned_cols=128  Identities=16%  Similarity=0.245  Sum_probs=84.9

Q ss_pred             HHHHHHHHHhCC-cCcHHHHHHhhhhcC--CCCChHHHHHHHHHHHHHHHHccccchhhHHHHHHHHHhhccC---CChh
Q 046417           40 TAELESIARTLT-QDSFSSFLNCLQTTD--SSSKSPVRKQCVNLLTLLSRSHGDSLSPHLSKMISTVSCRLRD---PDSS  113 (595)
Q Consensus        40 ~~~LD~lA~~L~-~~~lp~fL~~L~d~~--ss~kp~vRKaaI~lLG~lAEg~gd~I~PhLpkIL~~IvrrLkD---~ds~  113 (595)
                      .++|..+.++-. ...+|.|+..|.+..  .-.+...=...++....+..--.=++-|||..+||.++..+=.   ....
T Consensus        26 ~~aL~sL~~D~gL~~LlPyf~~fI~~~v~~nl~~l~~L~~lm~~~~ALl~N~~l~lepYlH~LipsvLtCll~k~l~~~~  105 (196)
T 4atg_A           26 DIAIECLEKESGLQQLVPYFIQHISELILKSFKEAEVLKTCIALYFSLIKNKHVFIDPYLHQILPSLLTCVIGKSIVDDD  105 (196)
T ss_dssp             HHHHHHHHHCSSCTTTHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHCTTCCCGGGHHHHHHHHHHHHHCTTCCCHH
T ss_pred             HHHHHHHhcCCChhhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHhcccCHHH
Confidence            345666666544 334888888887653  2224555555666666666655677899999999988766422   1127


Q ss_pred             HHHHHHHHHHHhhhhhcCC--cch-hccHHHHHHHhh-cCChhHHHHHHHHHHHHHhc
Q 046417          114 VRSACVAATTAMSLNITKP--SFS-VLSKPLIELILV-EQDVNSQVGGAMCLAAAIDA  167 (595)
Q Consensus       114 VR~Ac~~aLg~LA~~l~~~--~~~-~~l~PLi~aLl~-d~nk~VQ~~AA~cLaaviE~  167 (595)
                      +|+-++..|+.++....+.  ... .+.+-|..+|+. ......+-||..+|.++...
T Consensus       106 LRd~AA~lL~~I~~~~~~~y~~L~~RI~~tl~k~l~dp~~~l~t~YGAi~GL~~lG~~  163 (196)
T 4atg_A          106 VRKMSADIVKYIYDTYSRSYKTLAPRVLKTLKGVWMDPNRSEDSQYGALYCLSILSKN  163 (196)
T ss_dssp             HHHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCHH
T ss_pred             HHHHHHHHHHHHHHHhCccCchHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHhHHH
Confidence            9999999999999887542  111 266667777753 23445678999999998764

>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1

Probab=91.10  E-value=4  Score=48.53  Aligned_cols=187  Identities=14%  Similarity=-0.031  Sum_probs=106.4

Q ss_pred             HHHHHHHHHHhCCc--CcHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHcccc--c--hhhHHHHHHHHHhhccCCCh
Q 046417           39 ATAELESIARTLTQ--DSFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDS--L--SPHLSKMISTVSCRLRDPDS  112 (595)
Q Consensus        39 A~~~LD~lA~~L~~--~~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~--I--~PhLpkIL~~IvrrLkD~ds  112 (595)
                      |++.|-.+.....|  +.+..+...+.......++..|+.++++||.++..+...  .  ...++.|...+...+...+.
T Consensus       375 a~~~l~~~~~~~~Pt~e~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v~~i~~~l~~~~~~~~~  454 (1056)
T 1lsh_A          375 ATQIVASTLSNQQATRESLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDRAKE  454 (1056)
T ss_dssp             HHHHHHHHHHTCCCCHHHHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHhhccCCCCHHHHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhcCCh
Confidence            44555443332223  236666666544322345789999999999999865411  1  12355666667777777787


Q ss_pred             hHHHHHHHHHHHhhhhhcCCcchhccHHHHHHHhh------cCChhHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHh
Q 046417          113 SVRSACVAATTAMSLNITKPSFSVLSKPLIELILV------EQDVNSQVGGAMCLAAAIDAAPNPEVEQLRKLLPRLGKA  186 (595)
Q Consensus       113 ~VR~Ac~~aLg~LA~~l~~~~~~~~l~PLi~aLl~------d~nk~VQ~~AA~cLaaviE~a~d~~~~~L~~Ll~rL~kl  186 (595)
                      .-+..+..|||-++..-       .+++|...|-+      +....++.+|..||..+....       -..+-+-|+++
T Consensus       455 ~~~~~~LkaLGN~g~p~-------~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~-------p~~v~~il~~i  520 (1056)
T 1lsh_A          455 EEIVLALKALGNAGQPN-------SIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRD-------PRKVQEIVLPI  520 (1056)
T ss_dssp             HHHHHHHHHHHHHTCGG-------GHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTC-------HHHHHHHHHHH
T ss_pred             HHHHHHHHHhhccCChh-------HHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhc-------hHHHHHHHHHH
Confidence            78899999999998622       23333333311      123458888888888776432       11334445555


Q ss_pred             h--ccCchhHHHHHHHHHHHHHHhhcccCcCcHHhHHHHHHHhcc-CCCHHHHHHHHHHHHHHHH
Q 046417          187 V--RIEGFKAKAAVLGVIGSVVRVGGARSKGVLDWLVPCLVEFLC-CDDWATRKAAAEVLGKVAV  248 (595)
Q Consensus       187 L--~~~~~kaK~alLsAIgSlA~a~g~~~~~yl~~lmp~L~e~L~-~dDW~~RkaAaEaLgsIA~  248 (595)
                      +  ......+|.+++..+=   ..     .|- ...+..|...+. +.+-+++....-.|-.+|.
T Consensus       521 ~~n~~e~~EvRiaA~~~Lm---~t-----~P~-~~~l~~ia~~l~~E~~~QV~sfv~S~l~sla~  576 (1056)
T 1lsh_A          521 FLNVAIKSELRIRSCIVFF---ES-----KPS-VALVSMVAVRLRREPNLQVASFVYSQMRSLSR  576 (1056)
T ss_dssp             HHCTTSCHHHHHHHHHHHH---HT-----CCC-HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred             hcCCCCChHHHHHHHHHHH---HH-----CcC-HHHHHHHHHHHhhCchHHHHHHHHHHHHHHHh
Confidence            5  3347777766544332   11     122 234555555554 4666766555555555544

>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}

Probab=89.57  E-value=3.2  Score=40.22  Aligned_cols=128  Identities=12%  Similarity=0.102  Sum_probs=81.5

Q ss_pred             hccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCC-CchHHHHH-HHHHHHHHhhccCchhHHHHHHHHHHHHHHhhcccC
Q 046417          136 VLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAP-NPEVEQLR-KLLPRLGKAVRIEGFKAKAAVLGVIGSVVRVGGARS  213 (595)
Q Consensus       136 ~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~-d~~~~~L~-~Ll~rL~klL~~~~~kaK~alLsAIgSlA~a~g~~~  213 (595)
                      .|+.-+.+++++    .....   ||+.+-...+ .+++||+- .+...+..-++  +...=..++..+.++..=-....
T Consensus        11 ~yf~~It~a~~~----~~r~~---aL~sL~~D~gL~~LlPyf~~fI~~~v~~nl~--~l~~L~~lm~~~~ALl~N~~l~l   81 (196)
T 4atg_A           11 LYFDKILSMIKS----DMKDI---AIECLEKESGLQQLVPYFIQHISELILKSFK--EAEVLKTCIALYFSLIKNKHVFI   81 (196)
T ss_dssp             HHHHHHHHHHTS----TTHHH---HHHHHHHCSSCTTTHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHHHCTTCCC
T ss_pred             HHHHHHHHHHHh----HHHHH---HHHHHhcCCChhhhHHHHHHHHHHHHHhccC--CHHHHHHHHHHHHHHHcCCCCCh
Confidence            488888899865    12222   3344433322 33345553 35555555443  33322345667777665444556


Q ss_pred             cCcHHhHHHHHHHhcc----CCCHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHhccCCch
Q 046417          214 KGVLDWLVPCLVEFLC----CDDWATRKAAAEVLGKVAVFDKDLATEYKRSCLAALETRRFDKV  273 (595)
Q Consensus       214 ~~yl~~lmp~L~e~L~----~dDW~~RkaAaEaLgsIA~avge~f~py~~~~I~~Le~crfDKV  273 (595)
                      .+|+-.+||++..++-    ..+ .+|.-|+..|+.|....|+......+.+++.|...-.|..
T Consensus        82 epYlH~LipsvLtCll~k~l~~~-~LRd~AA~lL~~I~~~~~~~y~~L~~RI~~tl~k~l~dp~  144 (196)
T 4atg_A           82 DPYLHQILPSLLTCVIGKSIVDD-DVRKMSADIVKYIYDTYSRSYKTLAPRVLKTLKGVWMDPN  144 (196)
T ss_dssp             GGGHHHHHHHHHHHHHCTTCCCH-HHHHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHTCTT
T ss_pred             HHHHHHHHHHHHHHHHhcccCHH-HHHHHHHHHHHHHHHHhCccCchHHHHHHHHHHHHHcCCC
Confidence            8999999999999973    233 8999999999999999887555556666666666656654

>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1

Probab=88.90  E-value=19  Score=42.73  Aligned_cols=182  Identities=11%  Similarity=0.030  Sum_probs=93.1

Q ss_pred             HHHHHHHHHHhCCcCcHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccchhhHHHHHHHHHhhccCCChhHHHHH
Q 046417           39 ATAELESIARTLTQDSFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPHLSKMISTVSCRLRDPDSSVRSAC  118 (595)
Q Consensus        39 A~~~LD~lA~~L~~~~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~PhLpkIL~~IvrrLkD~ds~VR~Ac  118 (595)
                      ....|-.+.+.++.+.|..++..+.+     ++..|+--   +.+|+...-..       -+.+|...++..+-..-+ +
T Consensus       312 ~f~~Lv~~lR~~~~e~L~~l~~~~~~-----~~~~r~~~---lDal~~aGT~~-------a~~~i~~~i~~~~l~~~e-a  375 (1056)
T 1lsh_A          312 KFLRLTAFLRNVDAGVLQSIWHKLHQ-----QKDYRRWI---LDAVPAMATSE-------ALLFLKRTLASEQLTSAE-A  375 (1056)
T ss_dssp             HHHHHHHHHTTSCHHHHHHHHHHHTT-----SHHHHHHH---HHHHHHHCSHH-------HHHHHHHHHHTTCSCHHH-H
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHhc-----cHHHHHHH---HHHhHhcCCHH-------HHHHHHHHHHcCCCCHHH-H
Confidence            44556667777777777777777653     35566643   33343332221       122333334444433333 3


Q ss_pred             HHHHHHhhhhhcCCcchhccHHHHHHHh---hcCChhHHHHHHHHHHHHHhcC--C-Cc-hHHHHHHHHHHHHHhhccCc
Q 046417          119 VAATTAMSLNITKPSFSVLSKPLIELIL---VEQDVNSQVGGAMCLAAAIDAA--P-NP-EVEQLRKLLPRLGKAVRIEG  191 (595)
Q Consensus       119 ~~aLg~LA~~l~~~~~~~~l~PLi~aLl---~d~nk~VQ~~AA~cLaaviE~a--~-d~-~~~~L~~Ll~rL~klL~~~~  191 (595)
                      .++|..+. ++.. |...++.-+.+.+.   ...++.+...+.++++.++-..  . .. ..++++.+...|.+.++...
T Consensus       376 ~~~l~~~~-~~~~-Pt~e~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v~~i~~~l~~~~~~~~  453 (1056)
T 1lsh_A          376 TQIVASTL-SNQQ-ATRESLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDRAK  453 (1056)
T ss_dssp             HHHHHHHH-HTCC-CCHHHHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHTTC
T ss_pred             HHHHHHhh-ccCC-CCHHHHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhcCC
Confidence            34444322 3222 22123333333331   1245566677888888877551  1 11 12456667777777777777


Q ss_pred             hhHHHHHHHHHHHHHHhhcccCcCcHHhHHHHHHHhcc-------CCCHHHHHHHHHHHHHHHH
Q 046417          192 FKAKAAVLGVIGSVVRVGGARSKGVLDWLVPCLVEFLC-------CDDWATRKAAAEVLGKVAV  248 (595)
Q Consensus       192 ~kaK~alLsAIgSlA~a~g~~~~~yl~~lmp~L~e~L~-------~dDW~~RkaAaEaLgsIA~  248 (595)
                      ...+...|-+||.+..          +..++.|..++.       +..-.+|.+|+.+|..++.
T Consensus       454 ~~~~~~~LkaLGN~g~----------p~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~  507 (1056)
T 1lsh_A          454 EEEIVLALKALGNAGQ----------PNSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAK  507 (1056)
T ss_dssp             HHHHHHHHHHHHHHTC----------GGGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGG
T ss_pred             hHHHHHHHHHhhccCC----------hhHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhh
Confidence            6667777777775442          123344444432       1234566666666666654

>1vsy_4 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_5

Probab=86.76  E-value=9  Score=44.39  Aligned_cols=168  Identities=10%  Similarity=0.107  Sum_probs=103.2

Q ss_pred             HHHHhhhhcCCCCChHHHHHHHHHHHHHHHHcc---ccchhhHHHHHHHHHhhccC---CChhHHHHHHHHHHHhhhhhc
Q 046417           57 SFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHG---DSLSPHLSKMISTVSCRLRD---PDSSVRSACVAATTAMSLNIT  130 (595)
Q Consensus        57 ~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~g---d~I~PhLpkIL~~IvrrLkD---~ds~VR~Ac~~aLg~LA~~l~  130 (595)
                      .+++.+.-..-+-+..+...++.+|..+|-..|   +.|.|   .|+..+...|..   .++.=-.+++.+|..++..+.
T Consensus       339 ~l~p~~~~g~fSK~~~~~~~~~~~l~~La~l~P~~~~lVlP---~vL~r~y~sLe~~~l~e~Hrl~~aL~~l~~~~r~lv  415 (799)
T 1vsy_4          339 IFLNIISLGSQNKNPDIANYYISCFAYLLELDPSNAYLIYD---KILIDLYDTLADQFINSRHRIISSLKQFTRVIRFIV  415 (799)
T ss_dssp             HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTCCTTHHHHHH---HHHHHHHHHHTTTTTTCHHHHHHHHHHHHTTHHHHT
T ss_pred             HHHHHHHHHhCcCCcchHHHHHHHHHHHHhcCCCccceehH---HHHHHHHHHhccccccchhHHHHHHHHHHHHHHHHh
Confidence            333344333344457888999999999999887   88777   777777777766   555556678889999998887


Q ss_pred             CCcc-hhccHHHHHHHhh---cCChhHHHHHHHHHHHHHhcCC--------C----------------------------
Q 046417          131 KPSF-SVLSKPLIELILV---EQDVNSQVGGAMCLAAAIDAAP--------N----------------------------  170 (595)
Q Consensus       131 ~~~~-~~~l~PLi~aLl~---d~nk~VQ~~AA~cLaaviE~a~--------d----------------------------  170 (595)
                      ..+. -.++.||+..++.   -+|..--..+...+..+.-..+        +                            
T Consensus       416 ~~~~yr~hl~~lL~l~LpgID~ND~~KT~~tl~fi~~i~s~ipi~d~s~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  495 (799)
T 1vsy_4          416 MDKLYRVHITNVLSMLVSKLDMNDTNLTSNLINGIVSIAAFIPIQDLTGEDDYISFESDTLPLVQQHFYHIKCGESSKTF  495 (799)
T ss_dssp             TSTTGGGHHHHHHHHHHHTCCSSCHHHHHHHHHHHHHHHHTSCBCCCCCCCTTCCHHHHTHHHHHHHHHHHHTTCCSSSC
T ss_pred             cCcccHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHHHhccccccCCcchhhhhhhhhhhhhhhhhhhhccccccccc
Confidence            5432 2477788877753   2333323334444444433210        0                            


Q ss_pred             ----------------chHHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHhh-cccCcCcHHhHHHHHHHhccC
Q 046417          171 ----------------PEVEQLRKLLPRLGKAVRIEGFKAKAAVLGVIGSVVRVG-GARSKGVLDWLVPCLVEFLCC  230 (595)
Q Consensus       171 ----------------~~~~~L~~Ll~rL~klL~~~~~kaK~alLsAIgSlA~a~-g~~~~~yl~~lmp~L~e~L~~  230 (595)
                                      .....+..++.|++.++++..   ...++..|.++...- +....+.++.++.-+.+|..+
T Consensus       496 ~~d~~~~~~~~~~sT~~f~~~v~~f~drvf~llen~~---Ee~l~~~l~~~~~~l~~~lS~~if~~~l~k~~~fv~~  569 (799)
T 1vsy_4          496 RVDDELLNNAFKASTTVFQSMLKVYVEKIFQLVDVDL---EDSLVTKINQTTMILQESMDDKIFNYFASLLNRNFWS  569 (799)
T ss_dssp             CCCTTHHHHHHHHHTSTHHHHHHHHHHHHHHHTTSCC---CTHHHHHHHHHHHHHHHTBCHHHHHHHHHHHHHHHHS
T ss_pred             cccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCc---hHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence                            011355578899999997631   133444444443322 333466778888888887654

>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*

Probab=86.72  E-value=33  Score=35.83  Aligned_cols=247  Identities=11%  Similarity=0.081  Sum_probs=144.0

Q ss_pred             CChhHHHHHHHHHhhhcCCC--C--hHHHHHHHHHHHHHh------------------------C-CcCcHHHHHHhhhh
Q 046417           14 PSTNDLKQRVITCLNKLADR--D--TLPVATAELESIART------------------------L-TQDSFSSFLNCLQT   64 (595)
Q Consensus        14 ~~~~~lk~rvl~~L~KL~Dr--D--T~r~A~~~LD~lA~~------------------------L-~~~~lp~fL~~L~d   64 (595)
                      -+++++-+.+..+|.+|.+.  +  ..+-+.+++......                        + ..+.+..++.+|. 
T Consensus        10 ktP~elVr~l~d~l~~l~~~~~~~~~~~k~~ee~sK~l~~mK~iL~G~~e~ep~~e~~~qL~~ei~~~dll~~Li~~l~-   88 (341)
T 1upk_A           10 KSPADIVKNLKESMAVLEKQDISDKKAEKATEEVSKNLVAMKEILYGTNEKEPQTEAVAQLAQELYNSGLLSTLVADLQ-   88 (341)
T ss_dssp             CCHHHHHHHHHHHHHHHHC---CTHHHHHHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHSHHHHHHHTGG-
T ss_pred             CCHHHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHhCHHHHHHHhcc-
Confidence            34678999999999999751  1  112243444332111                        1 1122333333333 


Q ss_pred             cCCCCChHHHHHHHHHHHHHHHHcc-------ccchhhHHHHHHHHHhhccCCChhHHHHHHHHHHHhhhhhcCCcc---
Q 046417           65 TDSSSKSPVRKQCVNLLTLLSRSHG-------DSLSPHLSKMISTVSCRLRDPDSSVRSACVAATTAMSLNITKPSF---  134 (595)
Q Consensus        65 ~~ss~kp~vRKaaI~lLG~lAEg~g-------d~I~PhLpkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~~~~~---  134 (595)
                         .-+...||.+...|..+.+--.       +++..| |+|+-.+++.-.++|...      ..|.|-+.+++-..   
T Consensus        89 ---~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~-peil~~L~~gYe~~diAl------~~G~mLRecir~e~la~  158 (341)
T 1upk_A           89 ---LIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQ-QNILFMLLKGYESPEIAL------NCGIMLRECIRHEPLAK  158 (341)
T ss_dssp             ---GSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTC-THHHHHHHHGGGSTTTHH------HHHHHHHHHHTSHHHHH
T ss_pred             ---cCCchhhccHHHHHHHHHhcccCCCCchhHHHHcC-HHHHHHHHHhhccchhHh------HHHHHHHHHHHhHHHHH
Confidence               3568999999999999887542       445444 799999999999998542      12444444433110   


Q ss_pred             ---h-hccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCCCchHHHHH----HHHHHHHHhhccCchhHHHHHHHHHHHHH
Q 046417          135 ---S-VLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNPEVEQLR----KLLPRLGKAVRIEGFKAKAAVLGVIGSVV  206 (595)
Q Consensus       135 ---~-~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d~~~~~L~----~Ll~rL~klL~~~~~kaK~alLsAIgSlA  206 (595)
                         . ..+-.+|+.+ ...+-.+...|..-+..+.-.=.....+||.    .+...+-++|.+++|-.|-+.|-.+|-+.
T Consensus       159 ~iL~~~~f~~fF~yv-~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQSlKLLgelL  237 (341)
T 1upk_A          159 IILWSEQFYDFFRYV-EMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLKLLGELL  237 (341)
T ss_dssp             HHHHSGGGGHHHHHT-TCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHH
T ss_pred             HHhccHHHHHHHHHh-cCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHHHHHHHHHH
Confidence               0 1344555555 3334334433333333332221122245554    67888889999999999999999999887


Q ss_pred             Hh--hcccCcCcH--HhHHHHHHHhccCCCHHHHHHHHHHHHHHHHH------hHHhHHHHHHHHHHHHHhccCCc
Q 046417          207 RV--GGARSKGVL--DWLVPCLVEFLCCDDWATRKAAAEVLGKVAVF------DKDLATEYKRSCLAALETRRFDK  272 (595)
Q Consensus       207 ~a--~g~~~~~yl--~~lmp~L~e~L~~dDW~~RkaAaEaLgsIA~a------vge~f~py~~~~I~~Le~crfDK  272 (595)
                      --  .-.-...|+  +.-+-.+...|.+..-..+..|.-..-....-      +-+.+..=....|++|....-||
T Consensus       238 ldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVANP~K~~~I~~IL~~Nr~kLl~fl~~f~~d~  313 (341)
T 1upk_A          238 LDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPNKTQPILDILLKNQAKLIEFLSKFQNDR  313 (341)
T ss_dssp             HSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHTHHHHHHHHHHTTTTC
T ss_pred             hCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeCCCCChHHHHHHHHHHHHHHHHHHhCCCCC
Confidence            42  111112232  22355556667777777777777777665432      12233334577888888888888

>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A

Probab=86.24  E-value=10  Score=42.94  Aligned_cols=152  Identities=13%  Similarity=0.116  Sum_probs=101.0

Q ss_pred             HHHHHHHHhhccCCCh-hHHHHHHHHHHHhhhhhcCCcchhccHHHHHHHhhcCChhHHHHHHHHHHHHHh---cCCC--
Q 046417           97 SKMISTVSCRLRDPDS-SVRSACVAATTAMSLNITKPSFSVLSKPLIELILVEQDVNSQVGGAMCLAAAID---AAPN--  170 (595)
Q Consensus        97 pkIL~~IvrrLkD~ds-~VR~Ac~~aLg~LA~~l~~~~~~~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE---~a~d--  170 (595)
                      ..-|+.++.||....- .=|.+|+.+|-.|++.+.......-+++|+..|-.+. ..+....+ +|+.++.   ...+  
T Consensus        20 ~etI~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk~y~~~Vg~~~l~~li~~L~~d~-~D~e~v~~-~LetL~~l~~~~~~~~   97 (651)
T 3grl_A           20 AETIQKLCDRVASSTLLDDRRNAVRALKSLSKKYRLEVGIQAMEHLIHVLQTDR-SDSEIIGY-ALDTLYNIISNDEEEE   97 (651)
T ss_dssp             HHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTTTTTTHHHHHTHHHHHHHHHSCT-TCHHHHHH-HHHHHHHHHCCC----
T ss_pred             hhHHHHHHHHHhhccchhHHHHHHHHHHHHHHHhHHHhhhhhHHHHHHHHhccc-ccHHHHHH-HHHHHHHHhCCCCccc
Confidence            3556778888876543 3499999999999986632111126899999995443 23332222 3454422   1111  


Q ss_pred             ----------chH-----HHH--HHHHHHHHHhhccCchhHHHHHHHHHHHHHHhhcccCcCcH---HhHHHHHHHhccC
Q 046417          171 ----------PEV-----EQL--RKLLPRLGKAVRIEGFKAKAAVLGVIGSVVRVGGARSKGVL---DWLVPCLVEFLCC  230 (595)
Q Consensus       171 ----------~~~-----~~L--~~Ll~rL~klL~~~~~kaK~alLsAIgSlA~a~g~~~~~yl---~~lmp~L~e~L~~  230 (595)
                                .+.     .++  +.-++-|+.+|+.+.|.+|-.++.++..+...-......++   +..+|.|+++|.+
T Consensus        98 ~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d  177 (651)
T 3grl_A           98 VEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLAD  177 (651)
T ss_dssp             ----------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGC
T ss_pred             ccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhC
Confidence                      110     111  24578889999999999999999999988865544222222   3579999999999


Q ss_pred             CCHHHHHHHHHHHHHHHHHh
Q 046417          231 DDWATRKAAAEVLGKVAVFD  250 (595)
Q Consensus       231 dDW~~RkaAaEaLgsIA~av  250 (595)
                      +.-.+|-.|+..|..|...-
T Consensus       178 ~rE~iRneallLL~~Lt~~n  197 (651)
T 3grl_A          178 SREVIRNDGVLLLQALTRSN  197 (651)
T ss_dssp             SSHHHHHHHHHHHHHHHTTC
T ss_pred             chHHHHHHHHHHHHHHhcCC
Confidence            88899999999999998643

>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A

Probab=86.04  E-value=16  Score=40.00  Aligned_cols=89  Identities=12%  Similarity=0.128  Sum_probs=68.5

Q ss_pred             CCChHHHHHHHHHHHHHhCCcCcHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccchhhHHHHHHHHHhhccCCC
Q 046417           32 DRDTLPVATAELESIARTLTQDSFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPHLSKMISTVSCRLRDPD  111 (595)
Q Consensus        32 DrDT~r~A~~~LD~lA~~L~~~~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~PhLpkIL~~IvrrLkD~d  111 (595)
                      +.-+-+.|++-+-.+...+| +.-..-+.++.+-..+++..+|+.+|+.|..+|..      .|+++|.-.+++.|+-.|
T Consensus        41 ~~k~K~LaaQ~I~kffk~FP-~l~~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~------~~i~kiaDvL~QlLqtdd  113 (507)
T 3u0r_A           41 GTKEKRLAAQFIPKFFKHFP-ELADSAINAQLDLCEDEDVSIRRQAIKELPQFATG------ENLPRVADILTQLLQTDD  113 (507)
T ss_dssp             CHHHHHHHHHHHHHHGGGCG-GGHHHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT------TCHHHHHHHHHHHTTCCC
T ss_pred             CHHHHHHHHHHHHHHHhhCh-hhHHHHHHHHHHHHhcccHHHHHHHHHhhHHHhhh------hhhhhHHHHHHHHHhccc
Confidence            44478899999999999996 33334444444444456789999999997777655      578999999999999888


Q ss_pred             hhHHHHHHHHHHHhhh
Q 046417          112 SSVRSACVAATTAMSL  127 (595)
Q Consensus       112 s~VR~Ac~~aLg~LA~  127 (595)
                      +.-+.+.-++|-.|-.
T Consensus       114 ~~E~~~V~~sL~sllk  129 (507)
T 3u0r_A          114 SAEFNLVNNALLSIFK  129 (507)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHh
Confidence            8888888888766664

>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6

Probab=80.65  E-value=6.5  Score=46.68  Aligned_cols=109  Identities=14%  Similarity=0.134  Sum_probs=83.5

Q ss_pred             HHHHHHHHHhhh-cCCCC---hHHHHHHHHHHHHHhC-CcCcHHHHHHhhhhcCCC---C--------Ch-HHHHHHHHH
Q 046417           18 DLKQRVITCLNK-LADRD---TLPVATAELESIARTL-TQDSFSSFLNCLQTTDSS---S--------KS-PVRKQCVNL   80 (595)
Q Consensus        18 ~lk~rvl~~L~K-L~DrD---T~r~A~~~LD~lA~~L-~~~~lp~fL~~L~d~~ss---~--------kp-~vRKaaI~l   80 (595)
                      +-+.+++.++.+ |.|..   -+..|+..|-.|.... +...+..++..+.+....   .        +. ..|-++++.
T Consensus       839 ~~~~~i~~~v~~~L~D~q~~EVRe~Aa~tLsgll~c~~~~~~~~~li~~f~~~~~~~~~~~~~~~~~~~~~~~rH~aVLg  918 (997)
T 1vsy_5          839 EEKNKILEFVVSNLYNEQFVEVRVRAASILSDIVHNWKEEQPLLSLIERFAKGLDVNKYTSKERQKLSKTDIKIHGNVLG  918 (997)
T ss_dssp             THHHHTHHHHTTTTTCSSCHHHHHHHHHHHHHHHHSCCSHHHHHHHHHHHTTSSTTTSSCHHHHHHHHHHCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhcccccccccccchHHHHHHHHHHH
Confidence            455788888888 68888   7888999999998887 523344555555544322   0        01 577899999


Q ss_pred             HHHHHHHccccc--hhhHHHHHHHHHhhccCCChhHHHHHHHHHHHhhh
Q 046417           81 LTLLSRSHGDSL--SPHLSKMISTVSCRLRDPDSSVRSACVAATTAMSL  127 (595)
Q Consensus        81 LG~lAEg~gd~I--~PhLpkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~  127 (595)
                      ||++..+++=.+  =++||++|..+.+.+.||.+ |+..+-.|++.|=+
T Consensus       919 L~AlV~a~Py~vP~P~w~P~~l~~La~~~~~~~~-i~~tvk~tlseFkr  966 (997)
T 1vsy_5          919 LGAIISAFPYVFPLPPWIPKNLSNLSSWARTSGM-TGNAAKNTISEFKK  966 (997)
T ss_dssp             HHHHHTTCSCCSSCCTHHHHHHHHHHTTSSSCSS-HHHHTHHHHHHHHH
T ss_pred             HHHHHhhCCCCCCCCcccHHHHHHHHHHhCCCCc-hHHHHHHHHHHHHh
Confidence            999999999555  67999999999999999877 99999999888763

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	595
d1u6gc_	1207	a.118.1.2 (C:) Cullin-associated NEDD8-dissociated	3e-12
d1u6gc_	1207	a.118.1.2 (C:) Cullin-associated NEDD8-dissociated	7e-11
d1u6gc_	1207	a.118.1.2 (C:) Cullin-associated NEDD8-dissociated	6e-08
d1u6gc_	1207	a.118.1.2 (C:) Cullin-associated NEDD8-dissociated	7e-05
d1ibrb_	458	a.118.1.1 (B:) Importin beta {Human (Homo sapiens)	8e-06
d1qbkb_	888	a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi	2e-05
d2bpta1	861	a.118.1.1 (A:1-861) Importin beta {Baker's yeast (	3e-04
d1b3ua_	588	a.118.1.2 (A:) Constant regulatory domain of prote	8e-04
d1b3ua_	588	a.118.1.2 (A:) Constant regulatory domain of prote	0.001
d1b3ua_	588	a.118.1.2 (A:) Constant regulatory domain of prote	0.002
d1b3ua_	588	a.118.1.2 (A:) Constant regulatory domain of prote	0.002
d2vgla_	584	a.118.1.10 (A:) Adaptin alpha C subunit N-terminal	0.001

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.5 bits (163), Expect = 3e-12
 Identities = 33/251 (13%), Positives = 82/251 (32%), Gaps = 5/251 (1%)

Query: 38  VATAELESIARTLTQDSFSSFLNCLQTTDSSSKSP-VRKQCVNLLTLLSRSHGDSLSPHL 96
           +      S    L  +        L +  +  +   V+ + ++++  +    G  L    
Sbjct: 111 IGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFH 170

Query: 97  SKMISTVSCRLRDPDSSVRSACVAATTAMSLNITKPSFSVLSKPLIELILVEQDVNSQVG 156
             +++ +  +L  P  +VR   + A   + ++     F  L + L+  +     +++   
Sbjct: 171 PSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSKNDSMSTTRT 230

Query: 157 GAMCLAAAIDAAPNPEVEQLRKLLPRLGKAVRIEGFKAKAAVLGVIGSVVRVGGARSKGV 216
              C+AA    A +   E L K++P + K   ++  + +   +    S VR         
Sbjct: 231 YIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPH 290

Query: 217 LDWLVPCLVEFLCCDDWATRKAAAEVLGKVAVFDKDLATEYKRSCLAALETRRFDKVKIV 276
           +  ++   +++L  D         E    +         +          +   D    V
Sbjct: 291 VSTIINICLKYLTYDPNYNYDDEDEDENAM----DADGGDDDDQGSDDEYSDDDDMSWKV 346

Query: 277 RETMNRSLEMW 287
           R    + L+  
Sbjct: 347 RRAAAKCLDAV 357

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.8 bits (151), Expect = 7e-11
 Identities = 32/210 (15%), Positives = 69/210 (32%), Gaps = 13/210 (6%)

Query: 56  SSFLNCLQTTDSSSKSPVRKQ-CVNLLTLLSRSHGDSLSPHLSKMISTVSCRLRDPDSSV 114
           S+ L  + ++D       R     +L+T L +           K++  +   L D +  V
Sbjct: 6   SNLLEKMTSSDKD----FRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEV 61

Query: 115 RSACVAATTAMSLNITKPSFSVLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNPEVE 174
           ++  V     +   + +     +   L   +L       +   ++ L   I   P     
Sbjct: 62  QNLAVKCLGPLVSKVKEYQVETIVDTLCTNML-SDKEQLRDISSIGLKTVIGELPPASSG 120

Query: 175 Q------LRKLLPRLGKAV-RIEGFKAKAAVLGVIGSVVRVGGARSKGVLDWLVPCLVEF 227
                   +K+  RL  A+ + E    +   L ++  ++   G         ++ CL+  
Sbjct: 121 SALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQ 180

Query: 228 LCCDDWATRKAAAEVLGKVAVFDKDLATEY 257
           L     A RK     LG + +   ++    
Sbjct: 181 LTSPRLAVRKRTIIALGHLVMSCGNIVFVD 210

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.6 bits (127), Expect = 6e-08
 Identities = 43/279 (15%), Positives = 90/279 (32%), Gaps = 17/279 (6%)

Query: 8    SSASPPPSTNDLKQRVITCLNKLADRDTLPVATAELESIARTLTQDSFSSFLNCLQTTDS 67
            + A P      + Q +    N  +      +A   L  +   +         + +    S
Sbjct: 804  TRACPKEGPAVVGQFIQDVKNSRSTDSIRLLALLSLGEVGHHIDLSGQLELKSVILEAFS 863

Query: 68   SSKSPVRKQCVNLLTLLSRSHGDSLSPHLSKMISTVSCRLRDPDSSVRSACVAATTAMSL 127
            S    V+      L  +S  +     P + + I++           +  +     ++ S+
Sbjct: 864  SPSEEVKSAASYALGSISVGNLPEYLPFVLQEITSQP----KRQYLLLHSLKEIISSASV 919

Query: 128  NITKPSFSVLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNPEVEQLRKLLPRLGKAV 187
               KP    +   L++     ++    V  A CL       P         LLPRL   +
Sbjct: 920  VGLKPYVENIWALLLKHCECAEEGTRNVV-AECLGKLTLIDPE-------TLLPRLKGYL 971

Query: 188  RIEGFKAKAAVLGVIGSVVRVGGARSKGVLDWLVPCLVEFLCCDDWATRKAAAEVLGKVA 247
                  A+++V+  +   +         +L   +   ++ L   D   R+ A       A
Sbjct: 972  ISGSSYARSSVVTAVKFTISDHPQPIDPLLKNCIGDFLKTLEDPDLNVRRVALVTFNSAA 1031

Query: 248  VFDKDLATEYKRSCLAALETRRFDKVKIVRETMNRSLEM 286
                 L  +   + L  L    +++ K+ +E + R +EM
Sbjct: 1032 HNKPSLIRDLLDTVLPHL----YNETKVRKE-LIREVEM 1065

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.6 bits (101), Expect = 7e-05
 Identities = 28/189 (14%), Positives = 64/189 (33%), Gaps = 10/189 (5%)

Query: 62  LQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPHLSKMISTVSCRLRDPDSSVRSACVAA 121
              + + +           +  L+R+        + + I  V         S+R   + +
Sbjct: 781 YSQSTALTHKQSYYSIAKCVAALTRACPKEGPAVVGQFIQDVKNSRSTD--SIRLLALLS 838

Query: 122 TTAMSLNITKPSFSVLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNPEVEQLRKLLP 181
              +  +I       L   ++E        + +V      +AA  A  +  V  L + LP
Sbjct: 839 LGEVGHHIDLSGQLELKSVILEAF---SSPSEEV-----KSAASYALGSISVGNLPEYLP 890

Query: 182 RLGKAVRIEGFKAKAAVLGVIGSVVRVGGARSKGVLDWLVPCLVEFLCCDDWATRKAAAE 241
            + + +  +  +    +  +   +        K  ++ +   L++   C +  TR   AE
Sbjct: 891 FVLQEITSQPKRQYLLLHSLKEIISSASVVGLKPYVENIWALLLKHCECAEEGTRNVVAE 950

Query: 242 VLGKVAVFD 250
            LGK+ + D
Sbjct: 951 CLGKLTLID 959

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 458

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.3 bits (108), Expect = 8e-06
 Identities = 17/111 (15%), Positives = 36/111 (32%), Gaps = 2/111 (1%)

Query: 38  VATAELESIARTLTQDSFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRS-HGDSLSPHL 96
            A   L  +A     D     L  ++    +     R   V     +        L P +
Sbjct: 346 AAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV 405

Query: 97  SKMISTVSCRLRDPDSSVRSACVAATTAMSLNITKPSF-SVLSKPLIELIL 146
            + + T+   ++DP   VR         +   + + +   V   PL++ ++
Sbjct: 406 IQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLI 456

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.1 bits (105), Expect = 2e-05
 Identities = 32/213 (15%), Positives = 76/213 (35%), Gaps = 19/213 (8%)

Query: 29  KLADRDTLPVATAELESIARTLTQD-----SFSSFLNCLQTTDSSSKSPVRKQCVNLLTL 83
           +  D+D + VA   L  +A  L  +     + S+ L  +          VR+    LL  
Sbjct: 632 EAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGD 691

Query: 84  LSRSHGDSLSPHLSKMISTVSCRLRDPDSSVRSACVAATTAMSLNIT---KPSFSVLSKP 140
           L+++    + P ++  +  +   L     SV +    A   +S+ +    +P   ++   
Sbjct: 692 LTKACFQHVKPCIADFMPILGTNLNPEFISVCNNATWAIGEISIQMGIEMQPYIPMVLHQ 751

Query: 141 LIELILVEQDVNSQVGGAMCLAAAIDAAPNPEV--EQLRKLLPRLGKAVR-IEGFKAKAA 197
           L+E I+   +    +     +         P+     L++ +     ++R I   + K +
Sbjct: 752 LVE-IINRPNTPKTLLENTAITIGRLGYVCPQEVAPMLQQFIRPWCTSLRNIRDNEEKDS 810

Query: 198 VLGVIGSVVRVGGARSKGVLDWLVPCLVEFLCC 230
               I +++ V  +        ++   + F   
Sbjct: 811 AFRGICTMISVNPSG-------VIQDFIFFCDA 836

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 861

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.4 bits (95), Expect = 3e-04
 Identities = 32/230 (13%), Positives = 76/230 (33%), Gaps = 35/230 (15%)

Query: 58  FLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPHLSKMISTVSCRLRDPDS--SVR 115
            L  L   DS    PV    V  +  +S S  +    +   M++ ++  + +P++   ++
Sbjct: 644 LLKALNQVDS----PVSITAVGFIADISNSLEEDFRRYSDAMMNVLAQMISNPNARRELK 699

Query: 116 SACVAATTAMSLNITKPSFSVLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNPEVEQ 175
            A ++    ++ NI    F     P +  I+                AA +  P     +
Sbjct: 700 PAVLSVFGDIASNI-GADF----IPYLNDIMA------------LCVAAQNTKPENGTLE 742

Query: 176 LRKLLPRLGKAVRIEGFKAKAAVLGVIGSVVRVGGARSKGVLDWLVPCLVEFLCCDDWAT 235
                 ++ +AV      A   ++  +             +  ++     +     + AT
Sbjct: 743 ALDYQIKVLEAV----LDAYVGIVAGLHDKPEALFPYVGTIFQFIAQVAEDPQLYSEDAT 798

Query: 236 RKAAAEVLGKVAVFDKDLATEYKRSCLAALETRRFDKVKIVRETMNRSLE 285
            +AA  ++G       D+A  +    +     + +     ++ T +  L 
Sbjct: 799 SRAAVGLIG-------DIAAMFPDGSIKQFYGQDWVI-DYIKRTRSGQLF 840

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.2 bits (92), Expect = 8e-04
 Identities = 24/193 (12%), Positives = 55/193 (28%), Gaps = 6/193 (3%)

Query: 94  PHLSKMISTVSCRLRDPDSSVRSACVAATTAMSLNITKPSFSVLSKPLIELILVEQDVNS 153
                ++  +     D    VR A +     ++  +    F      L    LV+     
Sbjct: 398 QLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAI 457

Query: 154 QVGGAMCLAAAIDAAPNPEVEQLRKLLPRLGKAVRIEGFKAKAAVLGVIGSVVRVGGARS 213
           +      L   ++     +      ++P++        +  +   L  I  +  V G   
Sbjct: 458 REAATSNLKKLVEK--FGKEWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDI 515

Query: 214 KGVLDWLVPCLVEFLCCDDWATRKAAAEVLGKVAVFDKDLATEYKRSCLAALETRRFDKV 273
                 ++P ++          R   A+ L K  +      +  +      LE    D+ 
Sbjct: 516 --TTKHMLPTVLRMAGDPVANVRFNVAKSLQK--IGPILDNSTLQSEVKPILEKLTQDQD 571

Query: 274 KIVRETMNRSLEM 286
             V+     +L +
Sbjct: 572 VDVKYFAQEALTV 584

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.8 bits (91), Expect = 0.001
 Identities = 29/204 (14%), Positives = 62/204 (30%), Gaps = 15/204 (7%)

Query: 38  VATAELESIARTL----TQDSFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLS 93
            +  +L +IA  L    T+     FL      +      + +Q     TL+         
Sbjct: 29  NSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVLLALAEQLGTFTTLVG------GP 82

Query: 94  PHLSKMISTVSCRLRDPDSSVRSACVAATTAMSLNITKPSFSVLSKPLIELILVEQDVNS 153
            ++  ++  +       ++ VR   V +  A+S   +         PL++ +       S
Sbjct: 83  EYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGGDWFTS 142

Query: 154 QVGGAMCLAAAIDAAPNPEVEQLRKLLPRLGKAVRIEGFKAKAAVLGVIGSVVRVGGARS 213
           +       +       +    +LR+    L         +A A+ LG    V+       
Sbjct: 143 RTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVL-----EL 197

Query: 214 KGVLDWLVPCLVEFLCCDDWATRK 237
             V   ++P        +  + R 
Sbjct: 198 DNVKSEIIPMFSNLASDEQDSVRL 221

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.6 bits (88), Expect = 0.002
 Identities = 20/114 (17%), Positives = 45/114 (39%), Gaps = 3/114 (2%)

Query: 39  ATAELESIARTLTQD-SFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPHLS 97
           AT+ L+ +     ++ + ++ +  +           R   +  + +LS   G  +     
Sbjct: 461 ATSNLKKLVEKFGKEWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDI--TTK 518

Query: 98  KMISTVSCRLRDPDSSVRSACVAATTAMSLNITKPSFSVLSKPLIELILVEQDV 151
            M+ TV     DP ++VR     +   +   +   +     KP++E +  +QDV
Sbjct: 519 HMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQSEVKPILEKLTQDQDV 572

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.6 bits (88), Expect = 0.002
 Identities = 23/140 (16%), Positives = 45/140 (32%), Gaps = 4/140 (2%)

Query: 46  IARTLTQDSFSSFLNCLQTT-DSSSKSPVRKQCVNLLTLLSRSHGDSLSPHLSKMISTVS 104
           +A  L  + F   LN L           +R+   + L  L    G       + +I  V 
Sbjct: 429 LAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKE--WAHATIIPKVL 486

Query: 105 CRLRDPDSSVRSACVAATTAMSLNITKPSFSVLSKPLIELILVEQDVNSQVGGAMCLAAA 164
               DP+   R   +     +S    +   +    P +  +  +   N +   A  L   
Sbjct: 487 AMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKI 546

Query: 165 IDAAPNPEV-EQLRKLLPRL 183
                N  +  +++ +L +L
Sbjct: 547 GPILDNSTLQSEVKPILEKL 566

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	595
d1qbkb_	888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	99.86
d2bpta1	861	Importin beta {Baker's yeast (Saccharomyces cerevi	99.62
d1b3ua_	588	Constant regulatory domain of protein phosphatase	99.61
d1qgra_	876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	99.58
d1b3ua_	588	Constant regulatory domain of protein phosphatase	99.53
d1u6gc_	1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	99.45
d1qbkb_	888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	99.37
d1ibrb_	458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	99.32
d2bpta1	861	Importin beta {Baker's yeast (Saccharomyces cerevi	99.26
d1ibrb_	458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	99.25
d1u6gc_	1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	99.24
d1qgra_	876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	99.12
d2vglb_	579	Adaptin beta subunit N-terminal fragment {Human (H	99.05
d1wa5c_	959	Exportin Cse1p {Baker's yeast (Saccharomyces cerev	98.93
d1oyza_	276	Hypothetical protein YibA {Escherichia coli [TaxId	98.88
d1q1sc_	434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	98.87
d1wa5b_	503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	98.76
d1wa5b_	503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	98.68
d2vglb_	579	Adaptin beta subunit N-terminal fragment {Human (H	98.66
d1jdha_	529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	98.62
d1xqra1	264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	98.59
d1oyza_	276	Hypothetical protein YibA {Escherichia coli [TaxId	98.56
d1xqra1	264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	98.56
d1q1sc_	434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	98.53
d1jdha_	529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	98.4
d1te4a_	111	MTH187 {Archaeon Methanobacterium thermoautotrophi	98.3
d2vgla_	584	Adaptin alpha C subunit N-terminal fragment {Mouse	98.25
d1wa5c_	959	Exportin Cse1p {Baker's yeast (Saccharomyces cerev	98.18
d1te4a_	111	MTH187 {Archaeon Methanobacterium thermoautotrophi	98.09
d2vgla_	584	Adaptin alpha C subunit N-terminal fragment {Mouse	97.61
d1xm9a1	457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	97.42
d1xm9a1	457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	97.33
d1lrva_	233	Leucine-rich repeat variant {Azotobacter vinelandi	96.81
d1lsha1	336	Lipovitellin-phosvitin complex, superhelical domai	94.58
d1lrva_	233	Leucine-rich repeat variant {Azotobacter vinelandi	94.42
d1lsha1	336	Lipovitellin-phosvitin complex, superhelical domai	92.91
d1upka_	330	Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}	84.71

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=5.4e-21  Score=215.35  Aligned_cols=226  Identities=18%  Similarity=0.148  Sum_probs=196.0

Q ss_pred             hHHHHHHHHHHHHHhCCcCcHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccchhhHHHHHHHHHhhccCCChhH
Q 046417           35 TLPVATAELESIARTLTQDSFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPHLSKMISTVSCRLRDPDSSV  114 (595)
Q Consensus        35 T~r~A~~~LD~lA~~L~~~~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~PhLpkIL~~IvrrLkD~ds~V  114 (595)
                      .+++|+..|+.++..++.+.++.+++.|.+...+++|..|++++.+||.+++||.+.+.||+++++++++..|+|+++.|
T Consensus       373 ~r~~a~~~L~~l~~~~~~~il~~~l~~l~~~l~s~~~~~reaa~~alg~i~eg~~~~~~~~l~~li~~l~~~l~d~~~~V  452 (888)
T d1qbkb_         373 LRKCSAAALDVLANVYRDELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALV  452 (888)
T ss_dssp             SHHHHHHHSTTTTTTCCSSSHHHHHHHHHHTTTSSSHHHHHHHHHHHHHHTTTSHHHHTTTHHHHHHHHHHHTTSSCHHH
T ss_pred             HHHHHHHHHhhHhhhhHHHHHHHHHHHHHHhhccchhHHHHHHHHHhhhhhhhHHHHhcccchhhhHHHHHhccCCCHHH
Confidence            68899999999999998888999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhhhcCCcchhccHHHHHHHh---hcCChhHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhccCc
Q 046417          115 RSACVAATTAMSLNITKPSFSVLSKPLIELIL---VEQDVNSQVGGAMCLAAAIDAAPNPEVEQLRKLLPRLGKAVRIEG  191 (595)
Q Consensus       115 R~Ac~~aLg~LA~~l~~~~~~~~l~PLi~aLl---~d~nk~VQ~~AA~cLaaviE~a~d~~~~~L~~Ll~rL~klL~~~~  191 (595)
                      |.++||+||+|+.|+.......++.+++..|+   .+.++.||.+||.||..++|.+.....||++.+++.|.++++...
T Consensus       453 r~~a~~~l~~~~~~~~~~~~~~~~~~~l~~ll~~l~d~~~~V~~~a~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~~~  532 (888)
T d1qbkb_         453 RSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKYQ  532 (888)
T ss_dssp             HHHHHHHHHHTHHHHHSSCHHHHTTTHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHTTSSGGGHHHHHHHHHHHTTTCC
T ss_pred             HHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHhhhh
Confidence            99999999999999865432234555555443   478899999999999999999888888999999999999998887


Q ss_pred             hhHHHHHHHHHHHHHHhhccc--CcCcHHhHHHHHHHhcc--CCCHHHHHHHHHHHHHHHHHhHHhHHHHHHH
Q 046417          192 FKAKAAVLGVIGSVVRVGGAR--SKGVLDWLVPCLVEFLC--CDDWATRKAAAEVLGKVAVFDKDLATEYKRS  260 (595)
Q Consensus       192 ~kaK~alLsAIgSlA~a~g~~--~~~yl~~lmp~L~e~L~--~dDW~~RkaAaEaLgsIA~avge~f~py~~~  260 (595)
                      .+.+..+++++++++...+..  ...|++.++|.+.+.|.  .++-..+..+++||+.++.+.|+.|.||...
T Consensus       533 ~~~~~~~~~al~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~le~l~~i~~~~~~~~~~~~~~  605 (888)
T d1qbkb_         533 HKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFLPYCEP  605 (888)
T ss_dssp             HHHHHHHHHHHHHHHHHHGGGGCSHHHHHHHHHHHHHHHTTSCTTCTTHHHHHHHHHHHHHHSTTTTHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhHHHHhhhHHH
Confidence            777888899999999866543  35788999999999885  2233456678999999999999888888755

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.62  E-value=3.3e-14  Score=153.38  Aligned_cols=270  Identities=11%  Similarity=0.074  Sum_probs=198.5

Q ss_pred             HHHHHHHHHhhhcCCC------ChHHHHHHHHHHHHHhCCcCcHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHcc-c
Q 046417           18 DLKQRVITCLNKLADR------DTLPVATAELESIARTLTQDSFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHG-D   90 (595)
Q Consensus        18 ~lk~rvl~~L~KL~Dr------DT~r~A~~~LD~lA~~L~~~~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~g-d   90 (595)
                      ++...++..+.+..+.      ..+..+...|+.++..++...++.+++.+.....+.+|..|++++.++|.+++++. +
T Consensus       324 ~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~  403 (861)
T d2bpta1         324 DVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKV  403 (861)
T ss_dssp             HHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHH
T ss_pred             HHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHhhcchhhhhhhcchhhhhhhhHHHHHHHHHHHHHHHHHhhcchh
Confidence            3444555555554321      16677889999999999888899999999998889999999999999999999997 5


Q ss_pred             cchhhHHHHHHHHHhhccCCChhHHHHHHHHHHHhhhhhcCCcc-hhccHHHHHHHhh----------------------
Q 046417           91 SLSPHLSKMISTVSCRLRDPDSSVRSACVAATTAMSLNITKPSF-SVLSKPLIELILV----------------------  147 (595)
Q Consensus        91 ~I~PhLpkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~~~~~-~~~l~PLi~aLl~----------------------  147 (595)
                      .+.+|++++++.+++.+.|+++.||.++++++|+++.++..... ..++..++..|+.                      
T Consensus       404 ~~~~~l~~~l~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~~l~~~  483 (861)
T d2bpta1         404 QRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDHPKVATNCSWTIINLVEQ  483 (861)
T ss_dssp             HHHHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHhcCcchhhhhHHHHHHHHHHHHhchhhhhHHhhhhhhHHHHhccccChHHHHHHHHHHHHHHHH
Confidence            66899999999999999999999999999999999988642100 0122222222211                      


Q ss_pred             ---------------------------cCChhHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhcc----C------
Q 046417          148 ---------------------------EQDVNSQVGGAMCLAAAIDAAPNPEVEQLRKLLPRLGKAVRI----E------  190 (595)
Q Consensus       148 ---------------------------d~nk~VQ~~AA~cLaaviE~a~d~~~~~L~~Ll~rL~klL~~----~------  190 (595)
                                                 +.+..+...+..||..+++..++...+++..+.+.+...|..    .      
T Consensus       484 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~i~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~  563 (861)
T d2bpta1         484 LAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSASISTFVMDKLGQTMSVDENQLTL  563 (861)
T ss_dssp             HSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHHHHHHHHHHHHHHHHTTSCGGGCCH
T ss_pred             hhhcccchhhHHHhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence                                       122334445555555555555555555555555554444421    0      


Q ss_pred             -----chhHHHHHHHHHHHHHHhhcccCcCcHHhHHHHHHHhcc-CCCHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHH
Q 046417          191 -----GFKAKAAVLGVIGSVVRVGGARSKGVLDWLVPCLVEFLC-CDDWATRKAAAEVLGKVAVFDKDLATEYKRSCLAA  264 (595)
Q Consensus       191 -----~~kaK~alLsAIgSlA~a~g~~~~~yl~~lmp~L~e~L~-~dDW~~RkaAaEaLgsIA~avge~f~py~~~~I~~  264 (595)
                           ....+..++.+++.++...+..+.+|++.+|+.+...+. .+++.+|..++.+|+.++..+|+.|.+|.+.+++.
T Consensus       564 ~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~v~~~~l~~l~~l~~~~~~~~~~~l~~i~p~  643 (861)
T d2bpta1         564 EDAQSLQELQSNILTVLAAVIRKSPSSVEPVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLETFSPY  643 (861)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHHHHHHH
T ss_pred             hHHhHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHhhH
Confidence                 112344555677777776677788999999999999986 46788999999999999999999999999999999


Q ss_pred             HHhccCCchHHHHHHHHHHHHHh
Q 046417          265 LETRRFDKVKIVRETMNRSLEMW  287 (595)
Q Consensus       265 Le~crfDKVK~VRda~~~aL~~~  287 (595)
                      |..+--|.-..||..+...+.-+
T Consensus       644 l~~~l~~~~~~v~~~a~~~l~~i  666 (861)
T d2bpta1         644 LLKALNQVDSPVSITAVGFIADI  666 (861)
T ss_dssp             HHHHHHCTTSHHHHHHHHHHHHH
T ss_pred             HHHHhCCCCHHHHHHHHHHHHHH
Confidence            88887788889998877666544

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=1.3e-14  Score=154.05  Aligned_cols=268  Identities=16%  Similarity=0.147  Sum_probs=193.4

Q ss_pred             hHHHHHHHHHhhhc-CCCC--hHHHHHHHHHHHHHhCCcCc-HHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccc
Q 046417           17 NDLKQRVITCLNKL-ADRD--TLPVATAELESIARTLTQDS-FSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSL   92 (595)
Q Consensus        17 ~~lk~rvl~~L~KL-~DrD--T~r~A~~~LD~lA~~L~~~~-lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I   92 (595)
                      ...+..++..+.+| .|.+  -++.|+..|..++..++.+. .+.+++.+.....++++.+|+.++.+++.++...++. 
T Consensus       159 ~~~~~~l~~~~~~l~~D~~~~VR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~i~~~~~~~-  237 (588)
T d1b3ua_         159 SAVKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQE-  237 (588)
T ss_dssp             HHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHHHHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHH-
T ss_pred             HHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHhhccCCHH-
Confidence            35666677777776 4666  46889999999999988655 3455666666666778999999999999999887753 


Q ss_pred             hhhHHHHHHHHHhhccCCChhHHHHHHHHHHHhhhhhcCCcchhccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCCCch
Q 046417           93 SPHLSKMISTVSCRLRDPDSSVRSACVAATTAMSLNITKPSFSVLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNPE  172 (595)
Q Consensus        93 ~PhLpkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~~~~~~~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d~~  172 (595)
                       .+...++|.+...++|++..||.++++++|.++..+........+.|++..++.+.++.|+..|+.+|..+++..+...
T Consensus       238 -~~~~~i~~~l~~~~~D~~~~Vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~l~~~~  316 (588)
T d1b3ua_         238 -DLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADC  316 (588)
T ss_dssp             -HHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCHHHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTT
T ss_pred             -HHHHHHHHHHHHhcccccHHHHHHHHHhHHHHHHHhhhhhhhhhhhHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhh
Confidence             3455688899999999999999999999999998764321123556777777688999999999999999988753322


Q ss_pred             --HHHHHHHHHHHHHhhccCchhHHHHHHHHHHHH---------------------------------------HHhhcc
Q 046417          173 --VEQLRKLLPRLGKAVRIEGFKAKAAVLGVIGSV---------------------------------------VRVGGA  211 (595)
Q Consensus       173 --~~~L~~Ll~rL~klL~~~~~kaK~alLsAIgSl---------------------------------------A~a~g~  211 (595)
                        ..+++.+++.+..++++....+|..+..+++.+                                       ....+ 
T Consensus       317 ~~~~~~~~i~~~l~~~~~d~~~~vr~~~~~~l~~~~~~~~~~~~~~~l~p~l~~~l~d~~~~v~~~~~~~l~~~~~~~~-  395 (588)
T d1b3ua_         317 RENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIG-  395 (588)
T ss_dssp             HHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCHHHHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSC-
T ss_pred             hhhhhHHHHHHHHHHhhcCCChHHHHHHHHHHhhhhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhcc-
Confidence              235556666666666555555554444333322                                       22111 


Q ss_pred             cCcCcHHhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhH-HhHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHhHhc
Q 046417          212 RSKGVLDWLVPCLVEFLCCDDWATRKAAAEVLGKVAVFDK-DLATEYKRSCLAALETRRFDKVKIVRETMNRSLEMWKEV  290 (595)
Q Consensus       212 ~~~~yl~~lmp~L~e~L~~dDW~~RkaAaEaLgsIA~avg-e~f~py~~~~I~~Le~crfDKVK~VRda~~~aL~~~K~i  290 (595)
                       ...+.+.++|.+.+.+.+.+|.+|.+++++|+.++...| +.+.++.   ++.+..+-.|.+..||.++.++|..+-+.
T Consensus       396 -~~~~~~~ll~~l~~~~~d~~~~~r~~~~~~l~~l~~~~~~~~~~~~l---~~~l~~~l~D~~~~VR~~A~~~L~~l~~~  471 (588)
T d1b3ua_         396 -IRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKL---NSLCMAWLVDHVYAIREAATSNLKKLVEK  471 (588)
T ss_dssp             -HHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGGGCCHHH---HHHHHHGGGCSSHHHHHHHHHHHHHHHHH
T ss_pred             -hhhhhhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcChHhHHHHH---HHHHHhhccCCchhHHHHHHHHHHHHHHH
Confidence             123356788889999999999999999999999999887 4444433   33455555699999999999998777544


Q ss_pred             C
Q 046417          291 P  291 (595)
Q Consensus       291 ~  291 (595)
                      .
T Consensus       472 ~  472 (588)
T d1b3ua_         472 F  472 (588)
T ss_dssp             H
T ss_pred             h
Confidence            4

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=1.7e-13  Score=148.80  Aligned_cols=255  Identities=13%  Similarity=0.114  Sum_probs=188.4

Q ss_pred             hHHHHHHHHHHHHHhCCcCcHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHcc-ccchhhHHHHHHHHHhhccCCChh
Q 046417           35 TLPVATAELESIARTLTQDSFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHG-DSLSPHLSKMISTVSCRLRDPDSS  113 (595)
Q Consensus        35 T~r~A~~~LD~lA~~L~~~~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~g-d~I~PhLpkIL~~IvrrLkD~ds~  113 (595)
                      .+..|...|+.++..++.+.++.+++.+.+...+..|..|++++.++|.+++++. +.+.++++++++.++..+.|+++.
T Consensus       344 ~~~~a~~~l~~l~~~~~~~~~~~~~~~i~~~l~~~~~~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~~~~  423 (876)
T d1qgra_         344 PCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVV  423 (876)
T ss_dssp             HHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCSSHH
T ss_pred             HHHHHHHHHHHHHHHhhhhhhhhhHHHHHHhhccchHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhcCCccH
Confidence            6778889999999999888899999999999999999999999999999999986 667999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhhhcCCcch-hccHHHHHHHhh--cCChhHHHHHHHHHHHHHhc-----------------------
Q 046417          114 VRSACVAATTAMSLNITKPSFS-VLSKPLIELILV--EQDVNSQVGGAMCLAAAIDA-----------------------  167 (595)
Q Consensus       114 VR~Ac~~aLg~LA~~l~~~~~~-~~l~PLi~aLl~--d~nk~VQ~~AA~cLaaviE~-----------------------  167 (595)
                      ||.++++++|++++++...... .++.+++..|+.  +.++.++..+|.++..+++.                       
T Consensus       424 vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~  503 (876)
T d1qgra_         424 VRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSAEPRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSF  503 (876)
T ss_dssp             HHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTH
T ss_pred             HHHHHHHHHHHHHHHcchhhhhHHHhhhHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence            9999999999999987532111 255666666543  44666777776666555432                       


Q ss_pred             -----------------------------------CCCchHHHH------------------------------------
Q 046417          168 -----------------------------------APNPEVEQL------------------------------------  176 (595)
Q Consensus       168 -----------------------------------a~d~~~~~L------------------------------------  176 (595)
                                                         ......+++                                    
T Consensus       504 ~~i~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~  583 (876)
T d1qgra_         504 ELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSL  583 (876)
T ss_dssp             HHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhccccHhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhhhHHHHHHHHH
Confidence                                               110000111                                    


Q ss_pred             ---------------------HHHHHHHHHhhcc--CchhHHHHHHHHHHHHHHhhcccCcCcHHhHHHHHHHhccC-CC
Q 046417          177 ---------------------RKLLPRLGKAVRI--EGFKAKAAVLGVIGSVVRVGGARSKGVLDWLVPCLVEFLCC-DD  232 (595)
Q Consensus       177 ---------------------~~Ll~rL~klL~~--~~~kaK~alLsAIgSlA~a~g~~~~~yl~~lmp~L~e~L~~-dD  232 (595)
                                           +.+++.+..++..  +...++..++.++++++.+.+..+.+|++.++|.|...|.+ ++
T Consensus       584 l~~~l~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~l~~ii~~l~~~l~~~~~  663 (876)
T d1qgra_         584 LCATLQNVLRKVQHQDALQISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYMEAFKPFLGIGLKNYAE  663 (876)
T ss_dssp             HHHHHHHHHTTSCHHHHHTTHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHcchhhhhhhHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHcchhhHHHHHHHHHHHHHHHhCCCc
Confidence                                 1112222222211  12234556677888888888888899999999999999975 56


Q ss_pred             HHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHhccCC-ch-HHHHHHHHHHHHHhHh
Q 046417          233 WATRKAAAEVLGKVAVFDKDLATEYKRSCLAALETRRFD-KV-KIVRETMNRSLEMWKE  289 (595)
Q Consensus       233 W~~RkaAaEaLgsIA~avge~f~py~~~~I~~Le~crfD-KV-K~VRda~~~aL~~~K~  289 (595)
                      +.+|.+|+++|+.++...+..+.||.+.++..|-.+--| .+ ..||.++..++..+-.
T Consensus       664 ~~v~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~k~~~~~~i~~i~~  722 (876)
T d1qgra_         664 YQVCLAAVGLVGDLCRALQSNIIPFCDEVMQLLLENLGNENVHRSVKPQILSVFGDIAL  722 (876)
T ss_dssp             HHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCTTSCGGGHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhHHhhhhhHHHHHHHHHHHhCCccCCHHHHHHHHHHHHHHHH
Confidence            899999999999999999999999988777775544322 22 4577777777665443

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=2.4e-13  Score=144.23  Aligned_cols=266  Identities=14%  Similarity=0.112  Sum_probs=194.0

Q ss_pred             HHHHHHHHHhhhc-CCCC--hHHHHHHHHHHHHHhCCcCc-HHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccc-
Q 046417           18 DLKQRVITCLNKL-ADRD--TLPVATAELESIARTLTQDS-FSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSL-   92 (595)
Q Consensus        18 ~lk~rvl~~L~KL-~DrD--T~r~A~~~LD~lA~~L~~~~-lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I-   92 (595)
                      .....++..+..+ .|.+  .+..+++.|-.++..++++. ...+++.+.....+.++.+|..++..++.+++..+... 
T Consensus       238 ~~~~~i~~~l~~~~~D~~~~Vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~l~~~~~  317 (588)
T d1b3ua_         238 DLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCR  317 (588)
T ss_dssp             HHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCHHHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTH
T ss_pred             HHHHHHHHHHHHhcccccHHHHHHHHHhHHHHHHHhhhhhhhhhhhHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhh
Confidence            4445566666665 4555  67778888888888877543 23344444444445678999999999999999876433 


Q ss_pred             -hhhHHHHHHHHHhhccCCChhHHHHHHHHHHHhhhhhcCCcchhccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCCCc
Q 046417           93 -SPHLSKMISTVSCRLRDPDSSVRSACVAATTAMSLNITKPSFSVLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNP  171 (595)
Q Consensus        93 -~PhLpkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~~~~~~~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d~  171 (595)
                       .+++.++++.+...+.|+++.||.+++.+++.++..+.+......+.|.+..++.+.+..++.+++.++..+.+..+. 
T Consensus       318 ~~~~~~~i~~~l~~~~~d~~~~vr~~~~~~l~~~~~~~~~~~~~~~l~p~l~~~l~d~~~~v~~~~~~~l~~~~~~~~~-  396 (588)
T d1b3ua_         318 ENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGI-  396 (588)
T ss_dssp             HHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCHHHHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCH-
T ss_pred             hhhhHHHHHHHHHHhhcCCChHHHHHHHHHHhhhhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhcch-
Confidence             567899999999999999999999999999988876643222234556555555888999999999998888876532 


Q ss_pred             hHHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHhhcccCcCcHHhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhH
Q 046417          172 EVEQLRKLLPRLGKAVRIEGFKAKAAVLGVIGSVVRVGGARSKGVLDWLVPCLVEFLCCDDWATRKAAAEVLGKVAVFDK  251 (595)
Q Consensus       172 ~~~~L~~Ll~rL~klL~~~~~kaK~alLsAIgSlA~a~g~~~~~yl~~lmp~L~e~L~~dDW~~RkaAaEaLgsIA~avg  251 (595)
                       ..+.+.|+|.+..++++++..+|.+++.+++.++...+..  .+.+.++|.+...+.++.|.+|.+|+.+|+.++...|
T Consensus       397 -~~~~~~ll~~l~~~~~d~~~~~r~~~~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~D~~~~VR~~A~~~L~~l~~~~~  473 (588)
T d1b3ua_         397 -RQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVE--FFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFG  473 (588)
T ss_dssp             -HHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGG--GCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHC
T ss_pred             -hhhhhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcChH--hHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHhC
Confidence             2456778899999999988889999999999888765433  2346677888888889999999999999999988776


Q ss_pred             HhHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHhHh
Q 046417          252 DLATEYKRSCLAALETRRFDKVKIVRETMNRSLEMWKE  289 (595)
Q Consensus       252 e~f~py~~~~I~~Le~crfDKVK~VRda~~~aL~~~K~  289 (595)
                      ..+  ....+++.+.+...|+-..+|.++..++..+.+
T Consensus       474 ~~~--~~~~i~~~l~~~~~~~~~~~R~~~~~~l~~l~~  509 (588)
T d1b3ua_         474 KEW--AHATIIPKVLAMSGDPNYLHRMTTLFCINVLSE  509 (588)
T ss_dssp             HHH--HHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHH
T ss_pred             cHH--HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            421  122344455555567677777777666666544

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=8.2e-13  Score=150.75  Aligned_cols=253  Identities=16%  Similarity=0.209  Sum_probs=201.0

Q ss_pred             hHHHHHHHHHHHHHhCCcCc---------HHHHHHhhhhcCC-CCChHHHHHHHHHHHHHHHHccccchhhHHHHHHHHH
Q 046417           35 TLPVATAELESIARTLTQDS---------FSSFLNCLQTTDS-SSKSPVRKQCVNLLTLLSRSHGDSLSPHLSKMISTVS  104 (595)
Q Consensus        35 T~r~A~~~LD~lA~~L~~~~---------lp~fL~~L~d~~s-s~kp~vRKaaI~lLG~lAEg~gd~I~PhLpkIL~~Iv  104 (595)
                      .+..+...|..+...++...         ++.++..+.+... ..++.+|.+++..|+.++..+|..+.++.+.+++.++
T Consensus        99 ~r~~~~~~L~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~al~~l~~l~~~~g~~l~~~~~~il~~l~  178 (1207)
T d1u6gc_          99 LRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLL  178 (1207)
T ss_dssp             HHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTTHHHHHHHHG
T ss_pred             hhHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHH
Confidence            45556666666666554211         3344444444332 3356889999999999999999999999999999999


Q ss_pred             hhccCCChhHHHHHHHHHHHhhhhhcCCcchhccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHH
Q 046417          105 CRLRDPDSSVRSACVAATTAMSLNITKPSFSVLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNPEVEQLRKLLPRLG  184 (595)
Q Consensus       105 rrLkD~ds~VR~Ac~~aLg~LA~~l~~~~~~~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d~~~~~L~~Ll~rL~  184 (595)
                      ..|.|+++.||..++.+++.++.++.+..+..++..++..|..+.+..+..+++.||..++...+....+|++.+++.+.
T Consensus       179 ~~l~~~~~~vR~~A~~~l~~l~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~  258 (1207)
T d1u6gc_         179 PQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVV  258 (1207)
T ss_dssp             GGGGCSSHHHHHHHHHHHHHHTTTC----CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGGGTTSCTTHHHHHH
T ss_pred             HHhCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHcchhhHHHHHHHHHHHH
Confidence            99999999999999999999998875433334777888888656666677788889999999888777889999999999


Q ss_pred             HhhccCchhHHHHHHHHHHHHHHhhcccCcCcHHhHHHHHHHhcc-----------------------------------
Q 046417          185 KAVRIEGFKAKAAVLGVIGSVVRVGGARSKGVLDWLVPCLVEFLC-----------------------------------  229 (595)
Q Consensus       185 klL~~~~~kaK~alLsAIgSlA~a~g~~~~~yl~~lmp~L~e~L~-----------------------------------  229 (595)
                      +.++.+...++..++.++.+++...+..+.+|+..+++.+.+++.                                   
T Consensus       259 ~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~ii~~~l~~l~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  338 (1207)
T d1u6gc_         259 KFCNVDDDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSD  338 (1207)
T ss_dssp             HHHSSCCTTTHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHTTCCCCC---------------------------------
T ss_pred             HHhcCccHHHHHHHHHHHHHHHHhChhhhhhhHHHHHHHHHHHHhcCcchhhhhHHHHHhhhhhhccchhhhhHHHHHhh
Confidence            999999989999999999999987776677888888877765542                                   


Q ss_pred             --CCCHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHh
Q 046417          230 --CDDWATRKAAAEVLGKVAVFDKDLATEYKRSCLAALETRRFDKVKIVRETMNRSLEMW  287 (595)
Q Consensus       230 --~dDW~~RkaAaEaLgsIA~avge~f~py~~~~I~~Le~crfDKVK~VRda~~~aL~~~  287 (595)
                        +..|.+|.+|+++|+.++...++.+.++...++..|-.+-.|+...||..+..++...
T Consensus       339 ~~d~s~~vR~~a~~~L~~l~~~~~~~l~~~~~~~~~~L~~~l~d~~~~vr~~~~~~l~~l  398 (1207)
T d1u6gc_         339 DDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRFKEREENVKADVFHAYLSL  398 (1207)
T ss_dssp             ---CTTHHHHHHHHHHHHHHTTCCTTHHHHHTTTHHHHHSTTSCSSSHHHHHHHHHHHHH
T ss_pred             hhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH
Confidence              2459999999999999998888888888888888888888899999999999887654

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=4.8e-11  Score=133.44  Aligned_cols=260  Identities=11%  Similarity=0.093  Sum_probs=188.9

Q ss_pred             hhcCCCCh--HHHHHHHHHHHHHhCCcC----cHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccchhhHHHHHH
Q 046417           28 NKLADRDT--LPVATAELESIARTLTQD----SFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPHLSKMIS  101 (595)
Q Consensus        28 ~KL~DrDT--~r~A~~~LD~lA~~L~~~----~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~PhLpkIL~  101 (595)
                      .-|.|.++  +..|+..|-.++..+.+.    .+..+++.|.....+.++.+|.+++.+|+.+++.+++.+.||++.|++
T Consensus       443 ~~l~d~~~~Vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~ll~~l~d~~~~V~~~a~~al~~l~~~~~~~l~p~~~~il~  522 (888)
T d1qbkb_         443 QCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYLAYILD  522 (888)
T ss_dssp             HHTTSSCHHHHHHHHHHHHHTHHHHHSSCHHHHTTTHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHTTSSGGGHHHHHH
T ss_pred             HhccCCCHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHH
Confidence            44567664  455777787777655322    245566666666666789999999999999999999999999999999


Q ss_pred             HHHhhccCCChhHHHHHHHHHHHhhhhhcCC---c-chh----------------------------------------c
Q 046417          102 TVSCRLRDPDSSVRSACVAATTAMSLNITKP---S-FSV----------------------------------------L  137 (595)
Q Consensus       102 ~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~~~---~-~~~----------------------------------------~  137 (595)
                      .+++.+.+.+..++.++.++++.++..+...   + ...                                        +
T Consensus       523 ~l~~~l~~~~~~~~~~~~~al~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~le~l~~i~~~~~~~~~~~  602 (888)
T d1qbkb_         523 TLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFLPY  602 (888)
T ss_dssp             HHHHHTTTCCHHHHHHHHHHHHHHHHHHGGGGCSHHHHHHHHHHHHHHHTTSCTTCTTHHHHHHHHHHHHHHSTTTTHHH
T ss_pred             HHHHHHhhhhHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhHHHHhhh
Confidence            9999999999999999999998888644210   0 000                                        1


Q ss_pred             cHHHHHHHhh--------------------cCChhHHHHHHHHHHHHHhcCCCchHHHHHH--HHHHHHHhhccCchhHH
Q 046417          138 SKPLIELILV--------------------EQDVNSQVGGAMCLAAAIDAAPNPEVEQLRK--LLPRLGKAVRIEGFKAK  195 (595)
Q Consensus       138 l~PLi~aLl~--------------------d~nk~VQ~~AA~cLaaviE~a~d~~~~~L~~--Ll~rL~klL~~~~~kaK  195 (595)
                      ..|++..+++                    ..++.....+.-++..+++..+....+++..  +++-+..++++....+|
T Consensus       603 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~vr  682 (888)
T d1qbkb_         603 CEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVR  682 (888)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHTTTTHHHHHTSCHHHHHHHHHTCSSHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHHHHhhhhhhhhhhHhhHHHHHHHHhCCCChHHH
Confidence            1111111100                    0122233344444555565544444455542  77788888888888999


Q ss_pred             HHHHHHHHHHHHhhcccCcCcHHhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhHHhHHHHHHHHH----HHHHhccCC
Q 046417          196 AAVLGVIGSVVRVGGARSKGVLDWLVPCLVEFLCCDDWATRKAAAEVLGKVAVFDKDLATEYKRSCL----AALETRRFD  271 (595)
Q Consensus       196 ~alLsAIgSlA~a~g~~~~~yl~~lmp~L~e~L~~dDW~~RkaAaEaLgsIA~avge~f~py~~~~I----~~Le~crfD  271 (595)
                      ..++.++|.++...+..+.+|++.++|.|.+.|.++++.++..|+-++|.||...|+.|.||.+.++    ++|++... 
T Consensus       683 ~~a~~llgdl~~~~~~~~~~~l~~~~~~l~~~L~~~~~~v~~~a~~~ig~ia~~~~~~~~py~~~il~~L~~il~~~~~-  761 (888)
T d1qbkb_         683 QSSFALLGDLTKACFQHVKPCIADFMPILGTNLNPEFISVCNNATWAIGEISIQMGIEMQPYIPMVLHQLVEIINRPNT-  761 (888)
T ss_dssp             HHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHTCCGGGHHHHHHHHHHHHHHHHHTGGGGGGGSHHHHHHHHHHHTCTTC-
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHcCCCc-
Confidence            9999999999988888889999999999999999999999999999999999999998888876555    44544322 


Q ss_pred             chHHHHHHHHHHHHHhHh
Q 046417          272 KVKIVRETMNRSLEMWKE  289 (595)
Q Consensus       272 KVK~VRda~~~aL~~~K~  289 (595)
                       .+-|++.+.-+|..+-.
T Consensus       762 -~~~v~~n~~~~lgrl~~  778 (888)
T d1qbkb_         762 -PKTLLENTAITIGRLGY  778 (888)
T ss_dssp             -CHHHHHHHHHHHHHHHH
T ss_pred             -cHHHHHHHHHHHHHHHH
Confidence             25688888888876543

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=1.1e-10  Score=116.60  Aligned_cols=271  Identities=12%  Similarity=0.099  Sum_probs=192.1

Q ss_pred             HHHHHHHHHhhh-cCCCChHHHHHHHHHHHHHhCCcC----cHHHHHHhhhhcCCC--CChHHHHHHHHHHHHHHHHccc
Q 046417           18 DLKQRVITCLNK-LADRDTLPVATAELESIARTLTQD----SFSSFLNCLQTTDSS--SKSPVRKQCVNLLTLLSRSHGD   90 (595)
Q Consensus        18 ~lk~rvl~~L~K-L~DrDT~r~A~~~LD~lA~~L~~~----~lp~fL~~L~d~~ss--~kp~vRKaaI~lLG~lAEg~gd   90 (595)
                      ++-..+++.+.- -.+....+.++..|..+...+.+.    .+..+++.+.....+  ....+|..++.+++.+.....+
T Consensus       127 ~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~il~~~~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~  206 (458)
T d1ibrb_         127 ELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKA  206 (458)
T ss_dssp             THHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHH
T ss_pred             chhHHHHHHHHhhcchHHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHhhhh
Confidence            456666666543 122234567888888888776533    355566666555433  3468999999999999876653


Q ss_pred             c--chhhHHHHHHHHHhhccCCChhHHHHHHHHHHHhhhhhcCC--cch-hccHHHHHHHhhcCChhHHHHHHHHHHHHH
Q 046417           91 S--LSPHLSKMISTVSCRLRDPDSSVRSACVAATTAMSLNITKP--SFS-VLSKPLIELILVEQDVNSQVGGAMCLAAAI  165 (595)
Q Consensus        91 ~--I~PhLpkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~~~--~~~-~~l~PLi~aLl~d~nk~VQ~~AA~cLaavi  165 (595)
                      .  .....+.+++.+...+.|+++.||..++++++.+++...+.  +.. ..+.+++...+.+.+..+...|+..+..++
T Consensus       207 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~  286 (458)
T d1ibrb_         207 NFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVC  286 (458)
T ss_dssp             HHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHH
T ss_pred             hhhhHHHHHHhHhhHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHH
Confidence            3  24566788899999999999999999999999999776421  111 133344434445667777777776666654


Q ss_pred             hcC--------------------CC-chHHHHHHHHHHHHHhhc-------cCchhHHHHHHHHHHHHHHhhcccCcCcH
Q 046417          166 DAA--------------------PN-PEVEQLRKLLPRLGKAVR-------IEGFKAKAAVLGVIGSVVRVGGARSKGVL  217 (595)
Q Consensus       166 E~a--------------------~d-~~~~~L~~Ll~rL~klL~-------~~~~kaK~alLsAIgSlA~a~g~~~~~yl  217 (595)
                      +..                    .. ....+++.+++.+...+.       ...+.++.++..+++.++...+.   .++
T Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~---~~~  363 (458)
T d1ibrb_         287 DEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED---DIV  363 (458)
T ss_dssp             HHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTT---THH
T ss_pred             HHHHHHHHhhhhHHHhhhHHHHHHHHHHHHHHHHHhhhHHhhhhcchhhhccccccHHHHHHHHHHHHHHhccH---hhh
Confidence            321                    00 012456677788777763       22334667778888888876553   457


Q ss_pred             HhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHh-HHhHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHhHhcC
Q 046417          218 DWLVPCLVEFLCCDDWATRKAAAEVLGKVAVFD-KDLATEYKRSCLAALETRRFDKVKIVRETMNRSLEMWKEVP  291 (595)
Q Consensus       218 ~~lmp~L~e~L~~dDW~~RkaAaEaLgsIA~av-ge~f~py~~~~I~~Le~crfDKVK~VRda~~~aL~~~K~i~  291 (595)
                      +.++|.+.+.+.+++|..|.+|+.+|+.|+..+ ++.+.+|.+.+++.+-.+-.|....||.++..+|..+-+..
T Consensus       364 ~~l~~~i~~~l~s~~~~~r~aal~~l~~i~~~~~~~~~~~~l~~i~~~l~~~l~d~~~~VR~~a~~~l~~i~~~~  438 (458)
T d1ibrb_         364 PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELL  438 (458)
T ss_dssp             HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHG
T ss_pred             hHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHh
Confidence            889999999999999999999999999999765 46778888888888888888999999999999997765543

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.26  E-value=2.7e-10  Score=122.32  Aligned_cols=250  Identities=12%  Similarity=0.096  Sum_probs=181.2

Q ss_pred             HHHHHHHHHHHhCCc-------CcHHHHHHhhhhcC--CCCChHHHHHHHHHHHHHHHHccccchhhHHHHHHHHHhhcc
Q 046417           38 VATAELESIARTLTQ-------DSFSSFLNCLQTTD--SSSKSPVRKQCVNLLTLLSRSHGDSLSPHLSKMISTVSCRLR  108 (595)
Q Consensus        38 ~A~~~LD~lA~~L~~-------~~lp~fL~~L~d~~--ss~kp~vRKaaI~lLG~lAEg~gd~I~PhLpkIL~~IvrrLk  108 (595)
                      .+...+..+...+..       ..+..++..+....  ......+|..++.+++.++...++.+.|++..+++.+...|.
T Consensus       472 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~i~~~~~~~~~~~~~l~~~~~~~l~  551 (861)
T d2bpta1         472 NCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSASISTFVMDKLG  551 (861)
T ss_dssp             HHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhcccchhhHHHhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence            344555555554431       11334444443322  234568999999999999999999999999998887766653


Q ss_pred             C----CC-----------hhHHHHHHHHHHHhhhhhcCCcchhccHHHHHHHh----hcCChhHHHHHHHHHHHHHhcCC
Q 046417          109 D----PD-----------SSVRSACVAATTAMSLNITKPSFSVLSKPLIELIL----VEQDVNSQVGGAMCLAAAIDAAP  169 (595)
Q Consensus       109 D----~d-----------s~VR~Ac~~aLg~LA~~l~~~~~~~~l~PLi~aLl----~d~nk~VQ~~AA~cLaaviE~a~  169 (595)
                      .    ..           ..++..++.+++.+...+.. ....++.+++..++    ...+..++..+..|+..+++..+
T Consensus       552 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~-~~~~~~~~l~~~l~~~l~~~~~~~v~~~~l~~l~~l~~~~~  630 (861)
T d2bpta1         552 QTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPS-SVEPVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLG  630 (861)
T ss_dssp             HHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGG-GTGGGHHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHG
T ss_pred             HHHHHHhhhhhhhHHhHHHHHHHHHHHHHHHHHhcchh-hHHHHHHHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHhh
Confidence            2    11           12345555566666554421 11124555555543    23455678889999999999887


Q ss_pred             CchHHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHhhcccCcCcHHhHHHHHHHhccCC--CHHHHHHHHHHHHHHH
Q 046417          170 NPEVEQLRKLLPRLGKAVRIEGFKAKAAVLGVIGSVVRVGGARSKGVLDWLVPCLVEFLCCD--DWATRKAAAEVLGKVA  247 (595)
Q Consensus       170 d~~~~~L~~Ll~rL~klL~~~~~kaK~alLsAIgSlA~a~g~~~~~yl~~lmp~L~e~L~~d--DW~~RkaAaEaLgsIA  247 (595)
                      +...+|++.++|.|...|++....++..++.+++.++...+..+.+|++.+++.|.+.|.++  ++.+|.+++.|||.|+
T Consensus       631 ~~~~~~l~~i~p~l~~~l~~~~~~v~~~a~~~l~~i~~~~~~~~~~~~~~i~~~L~~~l~~~~~~~~~k~~~~~~l~~i~  710 (861)
T d2bpta1         631 KGFEKYLETFSPYLLKALNQVDSPVSITAVGFIADISNSLEEDFRRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIA  710 (861)
T ss_dssp             GGGHHHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHTGGGGHHHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhHHHHHhCCCCHHHHHHHHHHHHHHHHHhHHHhHhhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHH
Confidence            77789999999999999999988999999999999999888888999999999999999754  5788999999999999


Q ss_pred             HHhHHhHHHHHHHHHHHHHhcc---CCc--------hHHHHHHHHHHHHHhH
Q 046417          248 VFDKDLATEYKRSCLAALETRR---FDK--------VKIVRETMNRSLEMWK  288 (595)
Q Consensus       248 ~avge~f~py~~~~I~~Le~cr---fDK--------VK~VRda~~~aL~~~K  288 (595)
                      ..+|+.|.||.+.+++.|...-   .|.        +-.||+++..++..+-
T Consensus       711 ~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~  762 (861)
T d2bpta1         711 SNIGADFIPYLNDIMALCVAAQNTKPENGTLEALDYQIKVLEAVLDAYVGIV  762 (861)
T ss_dssp             HHHGGGGHHHHHHHHHHHHHHHTCCCSSSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCcCCCcccHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999988876432   221        2346777766655543

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=1.8e-10  Score=114.87  Aligned_cols=227  Identities=13%  Similarity=0.146  Sum_probs=167.3

Q ss_pred             HHHHHHHHHHHHHhCCc-----CcHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccchhhHHHHHHH-HHhhccC
Q 046417           36 LPVATAELESIARTLTQ-----DSFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPHLSKMIST-VSCRLRD  109 (595)
Q Consensus        36 ~r~A~~~LD~lA~~L~~-----~~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~PhLpkIL~~-IvrrLkD  109 (595)
                      +..|+..+-.+...+..     ...+.+++.|.....++++.+|+.++..|+.+++.+++.+.||+..++.. +...+.+
T Consensus       190 ~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~l~~~~~~~~~~~~~~  269 (458)
T d1ibrb_         190 KLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKS  269 (458)
T ss_dssp             HHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHhhhhhhhhHHHHHHhHhhHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcc
Confidence            44455555555544321     12556777788877888899999999999999999999999998776554 5667888


Q ss_pred             CChhHHHHHHHHHHHhhhhhcCC-------------c-----ch--hccHHHHHHH---hh-------cCChhHHHHHHH
Q 046417          110 PDSSVRSACVAATTAMSLNITKP-------------S-----FS--VLSKPLIELI---LV-------EQDVNSQVGGAM  159 (595)
Q Consensus       110 ~ds~VR~Ac~~aLg~LA~~l~~~-------------~-----~~--~~l~PLi~aL---l~-------d~nk~VQ~~AA~  159 (595)
                      .+..|+..+++.+..+++...+.             .     ..  ..+..++..+   +.       +.+..+..+|+.
T Consensus       270 ~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~~  349 (458)
T d1ibrb_         270 DIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGV  349 (458)
T ss_dssp             SSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHhhhHHHHHHHHHHHHHHHHHhhhHHhhhhcchhhhccccccHHHHHHH
Confidence            89999999999888887543210             0     00  1222222222   11       233457788899


Q ss_pred             HHHHHHhcCCCchHHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHh-hcccCcCcHHhHHHHHHHhccCCCHHHHHH
Q 046417          160 CLAAAIDAAPNPEVEQLRKLLPRLGKAVRIEGFKAKAAVLGVIGSVVRV-GGARSKGVLDWLVPCLVEFLCCDDWATRKA  238 (595)
Q Consensus       160 cLaaviE~a~d~~~~~L~~Ll~rL~klL~~~~~kaK~alLsAIgSlA~a-~g~~~~~yl~~lmp~L~e~L~~dDW~~Rka  238 (595)
                      |+..+.+..++   .+++.+++.+...++++..++|.+++-++|+++.. .+..+.+|++.++|.|.+++.|++..+|.+
T Consensus       350 ~l~~l~~~~~~---~~~~~l~~~i~~~l~s~~~~~r~aal~~l~~i~~~~~~~~~~~~l~~i~~~l~~~l~d~~~~VR~~  426 (458)
T d1ibrb_         350 CLMLLATCCED---DIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDT  426 (458)
T ss_dssp             HHHHHHHHTTT---THHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGCSCHHHHHH
T ss_pred             HHHHHHHhccH---hhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHhCCCCHHHHHH
Confidence            99999988765   35677888888999999999999999999998863 345567899999999999999999999999


Q ss_pred             HHHHHHHHHHHhHHh--HHHHHHHHHHHH
Q 046417          239 AAEVLGKVAVFDKDL--ATEYKRSCLAAL  265 (595)
Q Consensus       239 AaEaLgsIA~avge~--f~py~~~~I~~L  265 (595)
                      |+.+||.++..+++.  ...|.+.++..|
T Consensus       427 a~~~l~~i~~~~~~~~~~~~~l~~ll~~l  455 (458)
T d1ibrb_         427 AAWTVGRICELLPEAAINDVYLAPLLQCL  455 (458)
T ss_dssp             HHHHHHHHHHHGGGGCCSTTTHHHHHHHH
T ss_pred             HHHHHHHHHHHhhcccchhhHHHHHHHHH
Confidence            999999999988642  334555655554

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=7.2e-11  Score=134.43  Aligned_cols=265  Identities=14%  Similarity=0.129  Sum_probs=201.6

Q ss_pred             HHHHHhhhcCCCCh--HHHHHHHHHHHHHh----CCcCcHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccchhh
Q 046417           22 RVITCLNKLADRDT--LPVATAELESIART----LTQDSFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPH   95 (595)
Q Consensus        22 rvl~~L~KL~DrDT--~r~A~~~LD~lA~~----L~~~~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~Ph   95 (595)
                      .+-+.|.|+.|.|+  +-+|+..|-...+.    ++.+....+++.|....+++++.+|..|+++||.++...++.   .
T Consensus         4 ~~~~ll~k~~~~D~d~R~ma~~dl~~~l~~~~~~~~~~~~~~i~~~ll~~L~D~~~~Vq~~A~k~l~~l~~~~~~~---~   80 (1207)
T d1u6gc_           4 HISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEY---Q   80 (1207)
T ss_dssp             HHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCHH---H
T ss_pred             hHHHHHHhcCCCCHhHHHHHHHHHHHHHhhcccccChHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCcHh---h
Confidence            46788999987775  45788777665432    334446666777766667778999999999999999887753   6


Q ss_pred             HHHHHHHHHhhccCCChhHHHHHHHHHHHhhhhhcCC----cch-h----ccHHHHHHHhhcCChhHHHHHHHHHHHHHh
Q 046417           96 LSKMISTVSCRLRDPDSSVRSACVAATTAMSLNITKP----SFS-V----LSKPLIELILVEQDVNSQVGGAMCLAAAID  166 (595)
Q Consensus        96 LpkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~~~----~~~-~----~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE  166 (595)
                      ++.|+..++..+.+++..+|++++.+|..+...+...    ... .    ++..|..++....+..++..|..+|..++.
T Consensus        81 ~~~l~~~L~~~l~~~~~~~r~~~~~~L~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~al~~l~~l~~  160 (1207)
T d1u6gc_          81 VETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLS  160 (1207)
T ss_dssp             HHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHH
Confidence            6789999999999999999999999998887766431    111 1    333344444334567788888888999988


Q ss_pred             cCCCchHHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHhhcccCcCcHHhHHHHHHHhc-cCCCHHHHHHHHHHHHH
Q 046417          167 AAPNPEVEQLRKLLPRLGKAVRIEGFKAKAAVLGVIGSVVRVGGARSKGVLDWLVPCLVEFL-CCDDWATRKAAAEVLGK  245 (595)
Q Consensus       167 ~a~d~~~~~L~~Ll~rL~klL~~~~~kaK~alLsAIgSlA~a~g~~~~~yl~~lmp~L~e~L-~~dDW~~RkaAaEaLgs  245 (595)
                      ..+....++...+++.|...|+++...+|..++.+++.++...+.   .++..+++.+.+.+ .+..|..|..++.+|+.
T Consensus       161 ~~g~~l~~~~~~il~~l~~~l~~~~~~vR~~A~~~l~~l~~~~~~---~~~~~~~~~ll~~l~~~~~~~~~~~~~~~l~~  237 (1207)
T d1u6gc_         161 RQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGN---IVFVDLIEHLLSELSKNDSMSTTRTYIQCIAA  237 (1207)
T ss_dssp             HTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC-------CTTHHHHHHHHHHHTCSSCSCTTHHHHHHH
T ss_pred             HhhHhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHCCH---HHHHHHHHHHHHHHccCCCHHHHHHHHHHHHH
Confidence            887777789999999999999999988999999999988765433   22344555555554 46678889999999999


Q ss_pred             HHHHhHHhHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHhHhcCC
Q 046417          246 VAVFDKDLATEYKRSCLAALETRRFDKVKIVRETMNRSLEMWKEVPG  292 (595)
Q Consensus       246 IA~avge~f~py~~~~I~~Le~crfDKVK~VRda~~~aL~~~K~i~~  292 (595)
                      |+...|..|.+|.+.+++.+..+-.+.-..||+.+.+++..|-...+
T Consensus       238 l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~r~~al~~l~~l~~~~~  284 (1207)
T d1u6gc_         238 ISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCP  284 (1207)
T ss_dssp             HHHHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTT
T ss_pred             HHHHcchhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhCh
Confidence            99999988899988888887777677778899999999998876543

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.12  E-value=4.3e-09  Score=113.59  Aligned_cols=252  Identities=11%  Similarity=0.074  Sum_probs=178.9

Q ss_pred             HHHHHHHHHHhCCcCc----HHHHHHhhhhcCC--CCChHHHHHHHHHHHHHHHHccccchhhHHHHHHHHHhhccCCC-
Q 046417           39 ATAELESIARTLTQDS----FSSFLNCLQTTDS--SSKSPVRKQCVNLLTLLSRSHGDSLSPHLSKMISTVSCRLRDPD-  111 (595)
Q Consensus        39 A~~~LD~lA~~L~~~~----lp~fL~~L~d~~s--s~kp~vRKaaI~lLG~lAEg~gd~I~PhLpkIL~~IvrrLkD~d-  111 (595)
                      ....|..+...+..+.    .+.+++.+.....  ..++.+++.++.+++.++...++.+.||++.++|.+++.|++.+ 
T Consensus       584 l~~~l~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~l~~ii~~l~~~l~~~~~  663 (876)
T d1qgra_         584 LCATLQNVLRKVQHQDALQISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYMEAFKPFLGIGLKNYAE  663 (876)
T ss_dssp             HHHHHHHHHTTSCHHHHHTTHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHcchhhhhhhHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHcchhhHHHHHHHHHHHHHHHhCCCc
Confidence            3344555555554222    3345555544332  34578999999999999999999999999999999999999876 


Q ss_pred             hhHHHHHHHHHHHhhhhhcCC--cch-hccHHHHHHHhhcC--ChhHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHh
Q 046417          112 SSVRSACVAATTAMSLNITKP--SFS-VLSKPLIELILVEQ--DVNSQVGGAMCLAAAIDAAPNPEVEQLRKLLPRLGKA  186 (595)
Q Consensus       112 s~VR~Ac~~aLg~LA~~l~~~--~~~-~~l~PLi~aLl~d~--nk~VQ~~AA~cLaaviE~a~d~~~~~L~~Ll~rL~kl  186 (595)
                      +.||.+|+..+|.++..+...  +.. .++..++..| .+.  +..+...++.||..++...+....+|++.+++.|.+.
T Consensus       664 ~~v~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l-~~~~~~~~~k~~~~~~i~~i~~~~~~~~~~yl~~~l~~l~~~  742 (876)
T d1qgra_         664 YQVCLAAVGLVGDLCRALQSNIIPFCDEVMQLLLENL-GNENVHRSVKPQILSVFGDIALAIGGEFKKYLEVVLNTLQQA  742 (876)
T ss_dssp             HHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHH-TCTTSCGGGHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhHHhhhhhHHHHHHHHHHHh-CCccCCHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHH
Confidence            679999999999999776421  111 2556666666 332  3567788888999988887766678999999999988


Q ss_pred             hccC----c-------hhHHHHHHHHHHHHHHhhcc----------cCcCcHHhHHHHHHHhcc--CCCHHHHHHHHHHH
Q 046417          187 VRIE----G-------FKAKAAVLGVIGSVVRVGGA----------RSKGVLDWLVPCLVEFLC--CDDWATRKAAAEVL  243 (595)
Q Consensus       187 L~~~----~-------~kaK~alLsAIgSlA~a~g~----------~~~~yl~~lmp~L~e~L~--~dDW~~RkaAaEaL  243 (595)
                      ++..    .       ...+..++.++.++..+...          ...+|++.++..+.....  +.++..+..|+.+|
T Consensus       743 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~i  822 (876)
T d1qgra_         743 SQAQVDKSDYDMVDYLNELRESCLEAYTGIVQGLKGDQENVHPDVMLVQPRVEFILSFIDHIAGDEDHTDGVVACAAGLI  822 (876)
T ss_dssp             HTCCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSCCGGGGGSGGGHHHHHHHHHHHHTCSCCCHHHHHHHHHHH
T ss_pred             HhcccCccchhHHHHHHHHHHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence            7532    1       12456777777776653211          134555555554444333  45789999999999


Q ss_pred             HHHHHHhHHhHHHHH---HHHHHHHHhccCCchHHHHHHHHHHHHHhHhcC
Q 046417          244 GKVAVFDKDLATEYK---RSCLAALETRRFDKVKIVRETMNRSLEMWKEVP  291 (595)
Q Consensus       244 gsIA~avge~f~py~---~~~I~~Le~crfDKVK~VRda~~~aL~~~K~i~  291 (595)
                      |.|+...|..+.++.   +.+..+|+..+-..-.-.|+.+.-+.+.+|++.
T Consensus       823 ~~l~~~~g~~~~~~~~~~~~v~~ll~~~~~s~~~~~~~~a~~~~~~~~~~~  873 (876)
T d1qgra_         823 GDLCTAFGKDVLKLVEARPMIHELLTEGRRSKTNKAKTLARWATKELRKLK  873 (876)
T ss_dssp             HHHHHHHCTHHHHHHHTSHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcChHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhc
Confidence            999999986544443   666777887777778999999999999999876

>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Exportin Cse1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.93  E-value=1.3e-08  Score=112.29  Aligned_cols=232  Identities=13%  Similarity=0.089  Sum_probs=162.0

Q ss_pred             hHHHHHHHHHHHHHhCCcCcHHHHHHhhhhcC------CCCChHHHHHHHHHHHHHHHHcc---------c---cchhhH
Q 046417           35 TLPVATAELESIARTLTQDSFSSFLNCLQTTD------SSSKSPVRKQCVNLLTLLSRSHG---------D---SLSPHL   96 (595)
Q Consensus        35 T~r~A~~~LD~lA~~L~~~~lp~fL~~L~d~~------ss~kp~vRKaaI~lLG~lAEg~g---------d---~I~PhL   96 (595)
                      .+.+|...|..++...+...++.++..+.+..      .+.+|..|++++.++|.++....         .   .+.+.+
T Consensus       377 ~r~~a~~ll~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~e~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l  456 (959)
T d1wa5c_         377 RRRACTDFLKELKEKNEVLVTNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFF  456 (959)
T ss_dssp             HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHH
T ss_pred             HHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhhccCCccchHHHHHHHHHHHHHHhhhhhhhhhhhcccchhhHHHHH
Confidence            44556667788998887655666666554432      34679999999999999986432         1   123333


Q ss_pred             HHHHHHHHhhccCCChhHHHHHHHHHHHhhhhhcCCcchhccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCC-------
Q 046417           97 SKMISTVSCRLRDPDSSVRSACVAATTAMSLNITKPSFSVLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAP-------  169 (595)
Q Consensus        97 pkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~~~~~~~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~-------  169 (595)
                      ...+...+....++.+.+|..++|.+++++.+...+....++.-++..| .+.+..|+..||.||..+++...       
T Consensus       457 ~~~v~~~l~~~~~~~~~lr~~~~~~i~~~~~~~~~~~~~~~~~~l~~~L-~~~~~~V~~~a~~al~~~~~~~~~~~~~~~  535 (959)
T d1wa5c_         457 TKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLTKAQLIELMPILATFL-QTDEYVVYTYAAITIEKILTIRESNTSPAF  535 (959)
T ss_dssp             HHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSCHHHHHHHHHHHHHHT-TCSCHHHHHHHHHHHHHHTTCBSCSSSCCB
T ss_pred             HHHHHHHHccCCCchHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHh-CCCchhHHHHHHHHHHHHHHhhcccccchh
Confidence            3333334444566778899999999999999875221122555555555 67888999999999999998632       


Q ss_pred             ----CchHHHHHHHHHHHHHhhccCchh-----HHHHHHHHHHHHHHhhcccCcCcHHhHHHHHHHhcc-----CCCHHH
Q 046417          170 ----NPEVEQLRKLLPRLGKAVRIEGFK-----AKAAVLGVIGSVVRVGGARSKGVLDWLVPCLVEFLC-----CDDWAT  235 (595)
Q Consensus       170 ----d~~~~~L~~Ll~rL~klL~~~~~k-----aK~alLsAIgSlA~a~g~~~~~yl~~lmp~L~e~L~-----~dDW~~  235 (595)
                          +...||++.++..++.++......     +...++.+|+.++...+....+|++.+++.|.+.|.     ..+-..
T Consensus       536 ~~~~~~l~p~l~~ll~~L~~~l~~~~~~~~~~~~~~~ll~~l~~ii~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~  615 (959)
T d1wa5c_         536 IFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFPQLLAQFIEIVTIMAKNPSNPRF  615 (959)
T ss_dssp             SSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHHHHHHHHHHHHHHHTTSCCCHHH
T ss_pred             hccHHHHHhhHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccchHH
Confidence                224579999999999888654322     234588999999988777788999999999988873     235567


Q ss_pred             HHHHHHHHHHHHHHhH-HhHHHHHHHHHHHHHh
Q 046417          236 RKAAAEVLGKVAVFDK-DLATEYKRSCLAALET  267 (595)
Q Consensus       236 RkaAaEaLgsIA~avg-e~f~py~~~~I~~Le~  267 (595)
                      +..+.++|+.+....+ +.+..+...+++.+..
T Consensus       616 ~~~~~e~l~~l~~~~~~~~~~~l~~~l~p~i~~  648 (959)
T d1wa5c_         616 THYTFESIGAILNYTQRQNLPLLVDSMMPTFLT  648 (959)
T ss_dssp             HHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHH
Confidence            8889999999988775 5566666555555543

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

Probab=98.88  E-value=4.4e-08  Score=92.21  Aligned_cols=162  Identities=12%  Similarity=0.024  Sum_probs=115.2

Q ss_pred             HHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccchhhHHHHHHHHHhhccCCChhHHHHHHHHHHHhhhhhcCCcc
Q 046417           55 FSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPHLSKMISTVSCRLRDPDSSVRSACVAATTAMSLNITKPSF  134 (595)
Q Consensus        55 lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~PhLpkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~~~~~  134 (595)
                      ...++.+|.    +++|.+|..++..|+.+..          +..++.+++.|+|+++.||.+|+.+|+.+......  .
T Consensus        21 ~~~L~~~L~----d~~~~vR~~A~~~L~~~~~----------~~~~~~l~~~l~d~~~~vr~~a~~aL~~l~~~~~~--~   84 (276)
T d1oyza_          21 DDELFRLLD----DHNSLKRISSARVLQLRGG----------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKC--E   84 (276)
T ss_dssp             HHHHHHHTT----CSSHHHHHHHHHHHHHHCC----------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTT--H
T ss_pred             HHHHHHHhc----CCCHHHHHHHHHHHHhhCC----------HhHHHHHHHHHcCCCHHHHHHHHHHHHHhcccccc--c
Confidence            444455444    4789999999999987632          36788999999999999999999999988643211  1


Q ss_pred             hhccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHhhcccCc
Q 046417          135 SVLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNPEVEQLRKLLPRLGKAVRIEGFKAKAAVLGVIGSVVRVGGARSK  214 (595)
Q Consensus       135 ~~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d~~~~~L~~Ll~rL~klL~~~~~kaK~alLsAIgSlA~a~g~~~~  214 (595)
                      ...+..|+..++.+.+..|...|+.+|..++....    ...+.+++.+...+.++...++.+++.+++.+-.       
T Consensus        85 ~~~~~~l~~~~l~d~~~~vr~~a~~aL~~~~~~~~----~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~~~~-------  153 (276)
T d1oyza_          85 DNVFNILNNMALNDKSACVRATAIESTAQRCKKNP----IYSPKIVEQSQITAFDKSTNVRRATAFAISVIND-------  153 (276)
T ss_dssp             HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCG----GGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC---------
T ss_pred             cchHHHHHHHHhcCCChhHHHHHHHHHHHHccccc----hhhHHHHHHHHHHhcCcchHHHHHHHHHHhhcch-------
Confidence            12456677777789999999999999998876532    2456788888889988888777666555543211       


Q ss_pred             CcHHhHHHHHHHhccCCCHHHHHHHHHHHHHH
Q 046417          215 GVLDWLVPCLVEFLCCDDWATRKAAAEVLGKV  246 (595)
Q Consensus       215 ~yl~~lmp~L~e~L~~dDW~~RkaAaEaLgsI  246 (595)
                         +..++.+...+.+.+|..|..+..+++.+
T Consensus       154 ---~~~~~~l~~l~~~~~~~~~~~~~~~~~~~  182 (276)
T d1oyza_         154 ---KATIPLLINLLKDPNGDVRNWAAFAININ  182 (276)
T ss_dssp             ----CCHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred             ---HHHHHHHHHhcccccchhhhhHHHHHHhh
Confidence               22345566666667777777666655544

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.87  E-value=3.4e-08  Score=99.03  Aligned_cols=230  Identities=10%  Similarity=0.070  Sum_probs=163.4

Q ss_pred             HHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccchh-hHHHHHHHHHhhccCCChhHHHHHHHHHHHhhhhhcCC--
Q 046417           56 SSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSP-HLSKMISTVSCRLRDPDSSVRSACVAATTAMSLNITKP--  132 (595)
Q Consensus        56 p~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~P-hLpkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~~~--  132 (595)
                      ..+++.|.....+.++.++..++.+|+.++....+...- .-..+++.++..++++++.++.+++.+++.++..-.+.  
T Consensus       187 ~~~l~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~Lv~ll~~~~~~~~~~al~~l~~l~~~~~~~~~  266 (434)
T d1q1sc_         187 EQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQ  266 (434)
T ss_dssp             HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred             hhHHHHHHHHHhccccchhhhHHhhhcccchhhhhhHHHHhhcccchhcccccccchhhhhhchhhhhhhHHhhhhHHHH
Confidence            345566655556677899999999999998765433211 12357888899999999999999999999988532110  


Q ss_pred             cch--hccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCCCchHHHHH-HHHHHHHHhhccCchhHHHHHHHHHHHHHHhh
Q 046417          133 SFS--VLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNPEVEQLR-KLLPRLGKAVRIEGFKAKAAVLGVIGSVVRVG  209 (595)
Q Consensus       133 ~~~--~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d~~~~~L~-~Ll~rL~klL~~~~~kaK~alLsAIgSlA~a~  209 (595)
                      ...  ..+.+|+..| .+.++.++..|+.+|..+.....+.....+. .+++.+..++.++.++++..++.+|+.++..+
T Consensus       267 ~~~~~~~~~~l~~ll-~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~li~~l~~~~~~v~~~a~~~l~nl~~~~  345 (434)
T d1q1sc_         267 KVIDAGALAVFPSLL-TNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGG  345 (434)
T ss_dssp             HHHHTTGGGGHHHHT-TCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHSSCHHHHHHHHHHHHHHHHHS
T ss_pred             HHHhccccchHHHhh-cccchhhhHHHHHHHhhhccccchhHHHHhhhhhHHHHHHHHhccChHHHHHHHHHHHHHHhcC
Confidence            111  2667777766 6788889999999999988754322222222 37899999999999999999999999988755


Q ss_pred             cccCcCcH--HhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhHH-----hHHHHHH--HHHHHHHhccCCchHHHHHHH
Q 046417          210 GARSKGVL--DWLVPCLVEFLCCDDWATRKAAAEVLGKVAVFDKD-----LATEYKR--SCLAALETRRFDKVKIVRETM  280 (595)
Q Consensus       210 g~~~~~yl--~~lmp~L~e~L~~dDW~~RkaAaEaLgsIA~avge-----~f~py~~--~~I~~Le~crfDKVK~VRda~  280 (595)
                      ......++  ..+++.|.+++.+.|+..+..++++|..|......     .+.....  .++..++....++-.-||+.+
T Consensus       346 ~~~~~~~l~~~~~i~~L~~ll~~~d~~~~~~~l~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~n~~i~~~a  425 (434)
T d1q1sc_         346 TVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKAS  425 (434)
T ss_dssp             CHHHHHHHHHTTCHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTSHHHHHHHHTCSSHHHHHHH
T ss_pred             CHHHHHHHHHCCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHH
Confidence            32211112  23589999999999999999999999999765421     1222222  235566777777888888888


Q ss_pred             HHHHHH
Q 046417          281 NRSLEM  286 (595)
Q Consensus       281 ~~aL~~  286 (595)
                      ...|+.
T Consensus       426 ~~il~~  431 (434)
T d1q1sc_         426 LNLIEK  431 (434)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            777764

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.76  E-value=6.3e-08  Score=100.37  Aligned_cols=248  Identities=12%  Similarity=0.092  Sum_probs=165.5

Q ss_pred             hHHHHHHHHHHHHHh---------CCcCcHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccchhhH-HHHHHHHH
Q 046417           35 TLPVATAELESIART---------LTQDSFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPHL-SKMISTVS  104 (595)
Q Consensus        35 T~r~A~~~LD~lA~~---------L~~~~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~PhL-pkIL~~Iv  104 (595)
                      ....|+..+..+...         +....+|.++..|..   +.++..+.+++.+|+.++.+..+.....+ ..+++.++
T Consensus        92 ~~~~a~~~~r~~ls~~~~~~i~~ii~~g~i~~Lv~~l~~---~~~~~iq~~a~~~L~ni~~~~~~~~~~~~~~g~i~~l~  168 (503)
T d1wa5b_          92 EQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRE---NQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFI  168 (503)
T ss_dssp             HHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTST---TSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHhcCCCchHHHHHHCCChHHHHHHHcC---CCCHHHHHHHHHHHHHHHcCCHHHHHHHHhCCChHHHH
Confidence            555677777665421         112336666666653   23578999999999999977654433222 23688999


Q ss_pred             hhccCCChhHHHHHHHHHHHhhhhhcC--Ccch--hccHHHHHHHhhcCChhHHHHHHHHHHHHHhcC-CCchHHHHHHH
Q 046417          105 CRLRDPDSSVRSACVAATTAMSLNITK--PSFS--VLSKPLIELILVEQDVNSQVGGAMCLAAAIDAA-PNPEVEQLRKL  179 (595)
Q Consensus       105 rrLkD~ds~VR~Ac~~aLg~LA~~l~~--~~~~--~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a-~d~~~~~L~~L  179 (595)
                      ..|++++..|+..|+|+|+.|+.....  ....  ..+.+|+..+ .+.+..++..++.+|..++..- .......+..+
T Consensus       169 ~lL~s~~~~i~~~a~~~L~nia~~~~~~r~~l~~~~~~~~L~~ll-~~~~~~~~~~~~~~l~nl~~~~~~~~~~~~~~~~  247 (503)
T d1wa5b_         169 QLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLF-NSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQA  247 (503)
T ss_dssp             HHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGG-GSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGG
T ss_pred             HHhcCCChhHHHHHHHHHHHHhhhhHHHHHHHHhhcccccchhhc-ccCCHHHHHHHHHHHHHHhcCCccchHHHHHHHH
Confidence            999999999999999999999864321  1111  2667777665 6778888999999999999763 23234566778


Q ss_pred             HHHHHHhhccCchhHHHHHHHHHHHHHHhhcccCcCcH-HhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhHHhHHHHH
Q 046417          180 LPRLGKAVRIEGFKAKAAVLGVIGSVVRVGGARSKGVL-DWLVPCLVEFLCCDDWATRKAAAEVLGKVAVFDKDLATEYK  258 (595)
Q Consensus       180 l~rL~klL~~~~~kaK~alLsAIgSlA~a~g~~~~~yl-~~lmp~L~e~L~~dDW~~RkaAaEaLgsIA~avge~f~py~  258 (595)
                      +|.|.+++.+++..+...++.+++.++.........++ ..+++.|..++.++++.++..|+.+|+.|+....+......
T Consensus       248 l~~l~~~l~~~d~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~l~nl~~~~~~~~~~~~  327 (503)
T d1wa5b_         248 LPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVI  327 (503)
T ss_dssp             HHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred             HHHHHHHhccccHHHHHHHHHHHHhhccCCchhhhhhhhhhhhhhhhhcccCCchhhhhhHHHHHHHHHHHHHHHHHhhh
Confidence            99999999998888777777788877643222111112 34688999999999999999999999999864433221111


Q ss_pred             -HHHHHHHHhccCCchHHHHHHHHHHHHH
Q 046417          259 -RSCLAALETRRFDKVKIVRETMNRSLEM  286 (595)
Q Consensus       259 -~~~I~~Le~crfDKVK~VRda~~~aL~~  286 (595)
                       ..++..|..+-...-..||..+.-+|.-
T Consensus       328 ~~~~l~~l~~ll~~~~~~i~~~~~~~l~n  356 (503)
T d1wa5b_         328 NAGVLPALRLLLSSPKENIKKEACWTISN  356 (503)
T ss_dssp             HTTHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred             ccchHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence             1233444444334455677666666543

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.68  E-value=2.2e-07  Score=96.21  Aligned_cols=243  Identities=14%  Similarity=0.128  Sum_probs=162.2

Q ss_pred             HHHHHHHHHHHHHhCC--------cCcHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccchhh-HHHHHHHHHhh
Q 046417           36 LPVATAELESIARTLT--------QDSFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPH-LSKMISTVSCR  106 (595)
Q Consensus        36 ~r~A~~~LD~lA~~L~--------~~~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~Ph-LpkIL~~Ivrr  106 (595)
                      +.-|+..|-.|+..-+        ...++.++..|..    .+..++..++.+|+.++..+.+.-.-. -..+++.+++.
T Consensus       137 q~~a~~~L~ni~~~~~~~~~~~~~~g~i~~l~~lL~s----~~~~i~~~a~~~L~nia~~~~~~r~~l~~~~~~~~L~~l  212 (503)
T d1wa5b_         137 QLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYT----GSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGL  212 (503)
T ss_dssp             HHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHH----CCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHG
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHhcC----CChhHHHHHHHHHHHHhhhhHHHHHHHHhhcccccchhh
Confidence            3446666666654322        2235666666653    567899999999999997654321111 12357788889


Q ss_pred             ccCCChhHHHHHHHHHHHhhhhhcCCc-c--hh-ccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCCCchHHHHH-HHHH
Q 046417          107 LRDPDSSVRSACVAATTAMSLNITKPS-F--SV-LSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNPEVEQLR-KLLP  181 (595)
Q Consensus       107 LkD~ds~VR~Ac~~aLg~LA~~l~~~~-~--~~-~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d~~~~~L~-~Ll~  181 (595)
                      +.+.++.++..++|++..++.+-.... +  .. +++.|+..+ ...+..++..++.||..+++...+....++. .+++
T Consensus       213 l~~~~~~~~~~~~~~l~nl~~~~~~~~~~~~~~~~l~~l~~~l-~~~d~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~  291 (503)
T d1wa5b_         213 FNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLI-YSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPK  291 (503)
T ss_dssp             GGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHT-TCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHH
T ss_pred             cccCCHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHh-ccccHHHHHHHHHHHHhhccCCchhhhhhhhhhhhh
Confidence            999999999999999999987543221 1  11 444444444 6778889999999999999865443333333 4889


Q ss_pred             HHHHhhccCchhHHHHHHHHHHHHHHhhcccCcCcH-HhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhHHh---HH--
Q 046417          182 RLGKAVRIEGFKAKAAVLGVIGSVVRVGGARSKGVL-DWLVPCLVEFLCCDDWATRKAAAEVLGKVAVFDKDL---AT--  255 (595)
Q Consensus       182 rL~klL~~~~~kaK~alLsAIgSlA~a~g~~~~~yl-~~lmp~L~e~L~~dDW~~RkaAaEaLgsIA~avge~---f~--  255 (595)
                      +|+.++++++..++..++.+++.++..........+ ..+++.|..++.+.++..|+.++-+|+.++..-.+.   +.  
T Consensus       292 ~l~~ll~~~~~~v~~~al~~l~nl~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~i~~~~~~~l~nl~~~~~~~~~~i~~~  371 (503)
T d1wa5b_         292 RLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDA  371 (503)
T ss_dssp             HHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHT
T ss_pred             hhhhcccCCchhhhhhHHHHHHHHHHHHHHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHHHhhccHHHHHHHHHc
Confidence            999999999999999999999988743221111111 246889999999999999999999999997533221   11  


Q ss_pred             HHHHHHHHHHHhccCCchHHHHHHHHHHHHHh
Q 046417          256 EYKRSCLAALETRRFDKVKIVRETMNRSLEMW  287 (595)
Q Consensus       256 py~~~~I~~Le~crfDKVK~VRda~~~aL~~~  287 (595)
                      ...+.++..|...    -..||..+..+|.-+
T Consensus       372 ~~l~~li~~l~~~----~~~v~~~a~~~l~nl  399 (503)
T d1wa5b_         372 NLIPPLVKLLEVA----EYKTKKEACWAISNA  399 (503)
T ss_dssp             TCHHHHHHHHHHS----CHHHHHHHHHHHHHH
T ss_pred             cccchhHHhcccC----ChhHHHHHHHHHHHH
Confidence            1245667777654    234566666666544

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.62  E-value=1.8e-06  Score=89.61  Aligned_cols=223  Identities=11%  Similarity=0.100  Sum_probs=156.4

Q ss_pred             HHHHHHHHhhhcCCCChHHHHHHHHHHHHHhCC-------cCcHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHcccc
Q 046417           19 LKQRVITCLNKLADRDTLPVATAELESIARTLT-------QDSFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDS   91 (595)
Q Consensus        19 lk~rvl~~L~KL~DrDT~r~A~~~LD~lA~~L~-------~~~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~   91 (595)
                      +-..++..|.+-+|.+.++.|+..|-.|+.+-+       ...++.++.+|.    +.++.+++.++.+|+.++......
T Consensus        60 ~v~~l~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~Li~lL~----~~~~~v~~~a~~aL~~l~~~~~~~  135 (529)
T d1jdha_          60 MVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLG----SPVDSVLFYAITTLHNLLLHQEGA  135 (529)
T ss_dssp             HHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHTT----CSCHHHHHHHHHHHHHHHHHCTTH
T ss_pred             HHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhHHHHHHCCCHHHHHHHhC----CCCHHHHHHHHHHHHHhhcccchh
Confidence            334455566665666788888888877764321       233778777775    356899999999999999876532


Q ss_pred             c-hhhHHHHHHHHHhhccCCChhHHHHHHHHHHHhhhhhcCC--cch--hccHHHHHHHhhcCChhHHHHHHHHHHHHHh
Q 046417           92 L-SPHLSKMISTVSCRLRDPDSSVRSACVAATTAMSLNITKP--SFS--VLSKPLIELILVEQDVNSQVGGAMCLAAAID  166 (595)
Q Consensus        92 I-~PhLpkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~~~--~~~--~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE  166 (595)
                      - .-.-...++.++..|+++++.++..++++|+.++..-...  ...  -.+.+|+..|.......++..++.+|..+..
T Consensus       136 ~~~~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~l~~ls~  215 (529)
T d1jdha_         136 KMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV  215 (529)
T ss_dssp             HHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT
T ss_pred             hhHHHhcCCchHHHHHHHccChHHHHHHHHHHHHHhhhhhHHHHHHHhcccchHHHHHHHhhhhHHHHHHHHHHHhhhhc
Confidence            1 1123456888999999999999999999999998532110  011  1577888888555566778788887777654


Q ss_pred             cCCCchHHHHH-HHHHHHHHhhccCchhHHHHHHHHHHHHHHhhcccCcCcHHhHHHHHHHhccCCCHHHHHHHHHHHHH
Q 046417          167 AAPNPEVEQLR-KLLPRLGKAVRIEGFKAKAAVLGVIGSVVRVGGARSKGVLDWLVPCLVEFLCCDDWATRKAAAEVLGK  245 (595)
Q Consensus       167 ~a~d~~~~~L~-~Ll~rL~klL~~~~~kaK~alLsAIgSlA~a~g~~~~~yl~~lmp~L~e~L~~dDW~~RkaAaEaLgs  245 (595)
                      .. +....+.+ ..++.|.+++.++...++..++.++..+.....  .......+++.|.+++.++|..++..|+.+|+.
T Consensus       216 ~~-~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~l~~ls~~~~--~~~~~~~~i~~Lv~ll~~~~~~~~~~a~~~L~~  292 (529)
T d1jdha_         216 CS-SNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAAT--KQEGMEGLLGTLVQLLGSDDINVVTCAAGILSN  292 (529)
T ss_dssp             ST-THHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCT--TCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred             cc-cccchhhhhhhhhhHHHHhcccchhhhhhhhhHHHhcccccc--chhhhhhcchhhhhhcccccHHHHHHHHHHHHh
Confidence            22 11122332 377888999998888877777777776653322  223346789999999999999999999999999


Q ss_pred             HHH
Q 046417          246 VAV  248 (595)
Q Consensus       246 IA~  248 (595)
                      ++.
T Consensus       293 l~~  295 (529)
T d1jdha_         293 LTC  295 (529)
T ss_dssp             HTT
T ss_pred             hcc
Confidence            875

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.59  E-value=5.4e-07  Score=86.70  Aligned_cols=180  Identities=13%  Similarity=0.045  Sum_probs=127.4

Q ss_pred             hHHHHHHHHHHHHHHHHccccc-hhhHHHHHHHHHhhccCCChhHHHHHHHHHHHhhhhhcC-C-cch--hccHHHHHHH
Q 046417           71 SPVRKQCVNLLTLLSRSHGDSL-SPHLSKMISTVSCRLRDPDSSVRSACVAATTAMSLNITK-P-SFS--VLSKPLIELI  145 (595)
Q Consensus        71 p~vRKaaI~lLG~lAEg~gd~I-~PhLpkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~~-~-~~~--~~l~PLi~aL  145 (595)
                      ...|+.++.+|..+++.--..- .-.+.-+.+.|...|+++++.||..++++|+.++.+-.. + ...  ..+++|+..|
T Consensus        31 ~~~~~~Al~~L~~L~~~~d~a~~l~~~gg~~~ll~~ll~s~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~lL  110 (264)
T d1xqra1          31 QQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLL  110 (264)
T ss_dssp             HHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCHHHHHHHHHcCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHh
Confidence            5678888888888876432110 112233344455678899999999999999999975321 1 111  2678888877


Q ss_pred             hhcCChhHHHHHHHHHHHHHhcCCCchHHH-HHHHHHHHHHhhccCchhHHHHHHHHHHHHHHhhcccCcCcHH-hHHHH
Q 046417          146 LVEQDVNSQVGGAMCLAAAIDAAPNPEVEQ-LRKLLPRLGKAVRIEGFKAKAAVLGVIGSVVRVGGARSKGVLD-WLVPC  223 (595)
Q Consensus       146 l~d~nk~VQ~~AA~cLaaviE~a~d~~~~~-L~~Ll~rL~klL~~~~~kaK~alLsAIgSlA~a~g~~~~~yl~-~lmp~  223 (595)
                      ..+.+..++..|+.||..++-..+.....+ -...++-|.++|++++..++..++.+|+.++.........+.+ .++|.
T Consensus       111 ~~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~gi~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~v~~  190 (264)
T d1xqra1         111 DRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQ  190 (264)
T ss_dssp             HHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHH
T ss_pred             hcCCCHHHHHHHHHHHHHHhccchhhHHHHHHhhhhhHHHHHHhcCchHHHHHHHHHHHHHHhccHHHHHHHHHhhhHHH
Confidence            557788899999999999986543222112 2236788889999999888888888999887644332223332 36899


Q ss_pred             HHHhccCCCHHHHHHHHHHHHHHHHHh
Q 046417          224 LVEFLCCDDWATRKAAAEVLGKVAVFD  250 (595)
Q Consensus       224 L~e~L~~dDW~~RkaAaEaLgsIA~av  250 (595)
                      |.+.+.+++-.+|..|+.+|+.|+...
T Consensus       191 L~~lL~~~~~~~~~~a~~aL~~L~~~~  217 (264)
T d1xqra1         191 LVALVRTEHSPFHEHVLGALCSLVTDF  217 (264)
T ss_dssp             HHHHHTSCCSTHHHHHHHHHHHHHTTC
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHHHhcC
Confidence            999999988899999999999998644

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

Probab=98.56  E-value=5.1e-07  Score=84.68  Aligned_cols=219  Identities=11%  Similarity=0.054  Sum_probs=127.0

Q ss_pred             hcCCCC--hHHHHHHHHHHHHHhCCcCcHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccchhhHHHHHHHHH-h
Q 046417           29 KLADRD--TLPVATAELESIARTLTQDSFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPHLSKMISTVS-C  105 (595)
Q Consensus        29 KL~DrD--T~r~A~~~LD~lA~~L~~~~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~PhLpkIL~~Iv-r  105 (595)
                      -|.|.|  .+..|+..|-.+.   +++.++.++..+.+    +++.+|..++.+|+.+.....  .   .+.+++.+. .
T Consensus        27 ~L~d~~~~vR~~A~~~L~~~~---~~~~~~~l~~~l~d----~~~~vr~~a~~aL~~l~~~~~--~---~~~~~~~l~~~   94 (276)
T d1oyza_          27 LLDDHNSLKRISSARVLQLRG---GQDAVRLAIEFCSD----KNYIRRDIGAFILGQIKICKK--C---EDNVFNILNNM   94 (276)
T ss_dssp             HTTCSSHHHHHHHHHHHHHHC---CHHHHHHHHHHHTC----SSHHHHHHHHHHHHHSCCCTT--T---HHHHHHHHHHH
T ss_pred             HhcCCCHHHHHHHHHHHHhhC---CHhHHHHHHHHHcC----CCHHHHHHHHHHHHHhccccc--c---ccchHHHHHHH
Confidence            345666  6666777776553   24457777777654    579999999999987743322  1   122333333 3


Q ss_pred             hccCCChhHHHHHHHHHHHhhhhhcCCcchhccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCCCchHHHH---------
Q 046417          106 RLRDPDSSVRSACVAATTAMSLNITKPSFSVLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNPEVEQL---------  176 (595)
Q Consensus       106 rLkD~ds~VR~Ac~~aLg~LA~~l~~~~~~~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d~~~~~L---------  176 (595)
                      .++|+++.||.+++.+|+.++..-.  .....+.+.+..++.+.+..|+..|+.++....+...   .+.+         
T Consensus        95 ~l~d~~~~vr~~a~~aL~~~~~~~~--~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~~~~~~~---~~~l~~l~~~~~~  169 (276)
T d1oyza_          95 ALNDKSACVRATAIESTAQRCKKNP--IYSPKIVEQSQITAFDKSTNVRRATAFAISVINDKAT---IPLLINLLKDPNG  169 (276)
T ss_dssp             HHHCSCHHHHHHHHHHHHHHHHHCG--GGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC---CC---HHHHHHHHTCSSH
T ss_pred             HhcCCChhHHHHHHHHHHHHccccc--hhhHHHHHHHHHHhcCcchHHHHHHHHHHhhcchHHH---HHHHHHhcccccc
Confidence            4789999999999999999886532  1111223333333367777888777766554332110   0100         


Q ss_pred             -----------------HHHHHHHHHhhccCchhHHHHHHHHHHHHHHhhcccCcCcHHhHHHHHHHhccCCCHHHHHHH
Q 046417          177 -----------------RKLLPRLGKAVRIEGFKAKAAVLGVIGSVVRVGGARSKGVLDWLVPCLVEFLCCDDWATRKAA  239 (595)
Q Consensus       177 -----------------~~Ll~rL~klL~~~~~kaK~alLsAIgSlA~a~g~~~~~yl~~lmp~L~e~L~~dDW~~RkaA  239 (595)
                                       ..+.+.+...+.+.+..++..++.+++.+   +       -+..+|.|.+.+.+++  +|..|
T Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~---~-------~~~~~~~L~~~l~d~~--vr~~a  237 (276)
T d1oyza_         170 DVRNWAAFAININKYDNSDIRDCFVEMLQDKNEEVRIEAIIGLSYR---K-------DKRVLSVLCDELKKNT--VYDDI  237 (276)
T ss_dssp             HHHHHHHHHHHHHTCCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHT---T-------CGGGHHHHHHHHTSSS--CCHHH
T ss_pred             hhhhhHHHHHHhhhccccccchhhhhhhhhhhhhhhhhhccccchh---h-------hhhhHHHHHHHhCChH--HHHHH
Confidence                             12334455666666666665555544432   1       1345677777776554  78889


Q ss_pred             HHHHHHHHHHhHHhHHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Q 046417          240 AEVLGKVAVFDKDLATEYKRSCLAALETRRFDKVKIVRETMNRSLE  285 (595)
Q Consensus       240 aEaLgsIA~avge~f~py~~~~I~~Le~crfDKVK~VRda~~~aL~  285 (595)
                      +.+|+.|+.   +...   +.+...|..   |+=..||..+.++|.
T Consensus       238 ~~aL~~ig~---~~~~---~~L~~~l~~---~~d~~vr~~A~~~L~  274 (276)
T d1oyza_         238 IEAAGELGD---KTLL---PVLDTMLYK---FDDNEIITSAIDKLK  274 (276)
T ss_dssp             HHHHHHHCC---GGGH---HHHHHHHTT---SSCCHHHHHHHHHHT
T ss_pred             HHHHHHcCC---HHHH---HHHHHHHcc---CCCHHHHHHHHHHHc
Confidence            999988742   2222   222334432   334678888888764

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.56  E-value=7.3e-07  Score=85.75  Aligned_cols=150  Identities=16%  Similarity=0.110  Sum_probs=111.5

Q ss_pred             cHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccch-hhHHHHHHHHHhhcc-CCChhHHHHHHHHHHHhhhhhcC
Q 046417           54 SFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLS-PHLSKMISTVSCRLR-DPDSSVRSACVAATTAMSLNITK  131 (595)
Q Consensus        54 ~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~-PhLpkIL~~IvrrLk-D~ds~VR~Ac~~aLg~LA~~l~~  131 (595)
                      .+++++..+..   ++++.+|..++.+|+.++...+..-. -.-..++|.+++.|. ++++.||..|+++|+.++.....
T Consensus        59 g~~~ll~~ll~---s~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~v~~~a~~aL~~l~~~~~~  135 (264)
T d1xqra1          59 GMHLLVGRYLE---AGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEA  135 (264)
T ss_dssp             HHHHHHHTTTT---CSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHH
T ss_pred             CHHHHHHHHhC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHhhcCCCHHHHHHHHHHHHHHhccchh
Confidence            36777765544   45689999999999999986542211 111357788888884 78899999999999999865421


Q ss_pred             C--cch--hccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCCCchHHHHH-HHHHHHHHhhccCchhHHHHHHHHHHHHH
Q 046417          132 P--SFS--VLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNPEVEQLR-KLLPRLGKAVRIEGFKAKAAVLGVIGSVV  206 (595)
Q Consensus       132 ~--~~~--~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d~~~~~L~-~Ll~rL~klL~~~~~kaK~alLsAIgSlA  206 (595)
                      .  .+.  .-+.+|+..| .+.+..+|..++.+|..++...++....+.. ..++.|+.+|++++..++..++.+++.++
T Consensus       136 ~~~~~~~~~gi~~L~~lL-~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~v~~L~~lL~~~~~~~~~~a~~aL~~L~  214 (264)
T d1xqra1         136 GLLQFLRLDGFSVLMRAM-QQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLV  214 (264)
T ss_dssp             HHHHHHHTTHHHHHHHHH-HSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHH
T ss_pred             hHHHHHHhhhhhHHHHHH-hcCchHHHHHHHHHHHHHHhccHHHHHHHHHhhhHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence            0  111  1577888877 6788899999999999998875443333333 37899999999999999999999999887


Q ss_pred             H
Q 046417          207 R  207 (595)
Q Consensus       207 ~  207 (595)
                      .
T Consensus       215 ~  215 (264)
T d1xqra1         215 T  215 (264)
T ss_dssp             T
T ss_pred             h
Confidence            4

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.53  E-value=1.2e-06  Score=87.49  Aligned_cols=248  Identities=13%  Similarity=0.098  Sum_probs=155.6

Q ss_pred             hHHHHHHHHHHHHHhC--------CcCcHHHHHHhhhhcCCC-CChHHHHHHHHHHHHHHHHcccc-chhhHHHHHHHHH
Q 046417           35 TLPVATAELESIARTL--------TQDSFSSFLNCLQTTDSS-SKSPVRKQCVNLLTLLSRSHGDS-LSPHLSKMISTVS  104 (595)
Q Consensus        35 T~r~A~~~LD~lA~~L--------~~~~lp~fL~~L~d~~ss-~kp~vRKaaI~lLG~lAEg~gd~-I~PhLpkIL~~Iv  104 (595)
                      -...|+..|-.++..-        ....+..++..+...... .....-+.+..++..++..-... ...+...+++.++
T Consensus       115 ~~~~a~~~L~nl~~~~~~~~~~i~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~  194 (434)
T d1q1sc_         115 ISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLV  194 (434)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHTCCCTTCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccchHHHHHHHHhhhhhHHHHHHHhcccccchHHHHHHHHHHHHHHhhcccccchhhhhhhHHHHHH
Confidence            4445666666555321        123466666666543211 11233344444555555443322 2456778999999


Q ss_pred             hhccCCChhHHHHHHHHHHHhhhhhcCC-cc-h--hccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCCCchHHHH-HHH
Q 046417          105 CRLRDPDSSVRSACVAATTAMSLNITKP-SF-S--VLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNPEVEQL-RKL  179 (595)
Q Consensus       105 rrLkD~ds~VR~Ac~~aLg~LA~~l~~~-~~-~--~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d~~~~~L-~~L  179 (595)
                      ..+++.++.++..++++++.++..-... .. .  .++++|+..+ .+.+..++..|+.+|..++...+......+ ..+
T Consensus       195 ~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~Lv~ll-~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~  273 (434)
T d1q1sc_         195 RLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLL-GATELPIVTPALRAIGNIVTGTDEQTQKVIDAGA  273 (434)
T ss_dssp             HHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHH-TCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTG
T ss_pred             HHHhccccchhhhHHhhhcccchhhhhhHHHHhhcccchhccccc-ccchhhhhhchhhhhhhHHhhhhHHHHHHHhccc
Confidence            9999999999999999999998542110 11 1  2677777766 677888999999999988754322111222 246


Q ss_pred             HHHHHHhhccCchhHHHHHHHHHHHHHHhhcccCcCcH-HhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhH-HhHH--
Q 046417          180 LPRLGKAVRIEGFKAKAAVLGVIGSVVRVGGARSKGVL-DWLVPCLVEFLCCDDWATRKAAAEVLGKVAVFDK-DLAT--  255 (595)
Q Consensus       180 l~rL~klL~~~~~kaK~alLsAIgSlA~a~g~~~~~yl-~~lmp~L~e~L~~dDW~~RkaAaEaLgsIA~avg-e~f~--  255 (595)
                      ++.|..+|+++...++..++.+++.++..........+ ..++|.+...+.+.++..|..|+.+|+.++.... +.+.  
T Consensus       274 ~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~li~~l~~~~~~v~~~a~~~l~nl~~~~~~~~~~~l  353 (434)
T d1q1sc_         274 LAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYL  353 (434)
T ss_dssp             GGGHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred             cchHHHhhcccchhhhHHHHHHHhhhccccchhHHHHhhhhhHHHHHHHHhccChHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence            78889999999888888888888877643222111111 2378899999999999999999999999987653 2221  


Q ss_pred             -HH--HHHHHHHHHhccCCchHHHHHHHHHHHHHh
Q 046417          256 -EY--KRSCLAALETRRFDKVKIVRETMNRSLEMW  287 (595)
Q Consensus       256 -py--~~~~I~~Le~crfDKVK~VRda~~~aL~~~  287 (595)
                       ..  .+.++..|+    ++=.-++..+.++|..+
T Consensus       354 ~~~~~i~~L~~ll~----~~d~~~~~~~l~~l~~l  384 (434)
T d1q1sc_         354 VHCGIIEPLMNLLS----AKDTKIIQVILDAISNI  384 (434)
T ss_dssp             HHTTCHHHHHHHTT----SSCHHHHHHHHHHHHHH
T ss_pred             HHCCcHHHHHHHhc----CCCHHHHHHHHHHHHHH
Confidence             11  233334443    33345566666666544

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.40  E-value=2.8e-06  Score=88.06  Aligned_cols=259  Identities=14%  Similarity=0.058  Sum_probs=161.6

Q ss_pred             hHHHHHHHHHhhhc-CCCC--hHHHHHHHHHHHHHhCC--------cCcHHHHHHhhhhcCCCCChHHHHHHHHHHHHHH
Q 046417           17 NDLKQRVITCLNKL-ADRD--TLPVATAELESIARTLT--------QDSFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLS   85 (595)
Q Consensus        17 ~~lk~rvl~~L~KL-~DrD--T~r~A~~~LD~lA~~L~--------~~~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lA   85 (595)
                      .++..+.+..|.+| .|.|  .++.|+..|..++.+-+        ++.++.++..|...   .++..++.++.+|..++
T Consensus        12 ~~~~~~aip~L~~lL~~~~~~v~~~A~~~l~~l~~~~~~~~~~~~~~~~v~~l~~~L~~~---~~~~~~~~a~~~L~~l~   88 (529)
T d1jdha_          12 AELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNT---NDVETARCTAGTLHNLS   88 (529)
T ss_dssp             -----CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccHHHHHHHHhhhHHHHHHHHHcCC---CCHHHHHHHHHHHHHHh
Confidence            35666767777766 4545  67889999998886421        23366777666542   35789999999999887


Q ss_pred             HHcc--ccchhhHHHHHHHHHhhccCCChhHHHHHHHHHHHhhhhhcCC-c-ch--hccHHHHHHHhhcCChhHHHHHHH
Q 046417           86 RSHG--DSLSPHLSKMISTVSCRLRDPDSSVRSACVAATTAMSLNITKP-S-FS--VLSKPLIELILVEQDVNSQVGGAM  159 (595)
Q Consensus        86 Eg~g--d~I~PhLpkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~~~-~-~~--~~l~PLi~aLl~d~nk~VQ~~AA~  159 (595)
                      ..-.  ..+..+  ..++.+++.|+++++.|+..|+++|+.++..-... . +.  -.+++|+..| .+.++.+|..++.
T Consensus        89 ~~~~~~~~i~~~--g~i~~Li~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~Lv~lL-~~~~~~~~~~a~~  165 (529)
T d1jdha_          89 HHREGLLAIFKS--GGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALL-NKTNVKFLAITTD  165 (529)
T ss_dssp             TSHHHHHHHHHT--THHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGG-GCCCHHHHHHHHH
T ss_pred             CCchhHHHHHHC--CCHHHHHHHhCCCCHHHHHHHHHHHHHhhcccchhhhHHHhcCCchHHHHHH-HccChHHHHHHHH
Confidence            5222  222221  45789999999999999999999999998654221 1 11  2677888866 7888999999999


Q ss_pred             HHHHHHhcCCCchHHHHH-HHHHHHHHhhccCc-hhHHHHHHHHHHHHHHhhcccCcCcH-HhHHHHHHHhccCCCHHHH
Q 046417          160 CLAAAIDAAPNPEVEQLR-KLLPRLGKAVRIEG-FKAKAAVLGVIGSVVRVGGARSKGVL-DWLVPCLVEFLCCDDWATR  236 (595)
Q Consensus       160 cLaaviE~a~d~~~~~L~-~Ll~rL~klL~~~~-~kaK~alLsAIgSlA~a~g~~~~~yl-~~lmp~L~e~L~~dDW~~R  236 (595)
                      ||..+.....+.-..... ...+.|..+|.+.. -.++..+..++..++...... ...+ ...++.|...+.+.+..++
T Consensus       166 ~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~l~~ls~~~~~~-~~~~~~g~~~~L~~ll~~~~~~~~  244 (529)
T d1jdha_         166 CLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNK-PAIVEAGGMQALGLHLTDPSQRLV  244 (529)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHH-HHHHHTTHHHHHHTTTTSSCHHHH
T ss_pred             HHHHHhhhhhHHHHHHHhcccchHHHHHHHhhhhHHHHHHHHHHHhhhhcccccc-chhhhhhhhhhHHHHhcccchhhh
Confidence            999887653221111222 25677777776543 345555556666554211110 1111 2368889999999999999


Q ss_pred             HHHHHHHHHHHHHhHH--hHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHH
Q 046417          237 KAAAEVLGKVAVFDKD--LATEYKRSCLAALETRRFDKVKIVRETMNRSLEM  286 (595)
Q Consensus       237 kaAaEaLgsIA~avge--~f~py~~~~I~~Le~crfDKVK~VRda~~~aL~~  286 (595)
                      ..++.+|..++.....  ......+..++.+++   + -..||..+..+|.-
T Consensus       245 ~~a~~~l~~ls~~~~~~~~~~~~i~~Lv~ll~~---~-~~~~~~~a~~~L~~  292 (529)
T d1jdha_         245 QNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGS---D-DINVVTCAAGILSN  292 (529)
T ss_dssp             HHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTC---S-CHHHHHHHHHHHHH
T ss_pred             hhhhhHHHhccccccchhhhhhcchhhhhhccc---c-cHHHHHHHHHHHHh
Confidence            9999888888654321  222333444444432   2 23466665555543

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: MTH187
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=98.30  E-value=9.6e-08  Score=80.63  Aligned_cols=109  Identities=16%  Similarity=0.131  Sum_probs=87.1

Q ss_pred             ccCCChhHHHHHHHHHHHhhhhhcCCcchhccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHh
Q 046417          107 LRDPDSSVRSACVAATTAMSLNITKPSFSVLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNPEVEQLRKLLPRLGKA  186 (595)
Q Consensus       107 LkD~ds~VR~Ac~~aLg~LA~~l~~~~~~~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d~~~~~L~~Ll~rL~kl  186 (595)
                      |.|+++.||.++.++||.+...        .+.+|+.+| .+.++.|+..|+.||..+..          +..++.|.++
T Consensus         1 L~D~~~~VR~~A~~aL~~~~~~--------~~~~L~~~l-~d~~~~vR~~a~~~L~~~~~----------~~~~~~L~~~   61 (111)
T d1te4a_           1 MADENKWVRRDVSTALSRMGDE--------AFEPLLESL-SNEDWRIRGAAAWIIGNFQD----------ERAVEPLIKL   61 (111)
T ss_dssp             CCSSCCCSSSSCCSSTTSCSST--------THHHHHHGG-GCSCHHHHHHHHHHHGGGCS----------HHHHHHHHHH
T ss_pred             CCCcCHHHHHHHHHHHHHhCHH--------HHHHHHHHH-cCCCHHHHHHHHHHHHhcch----------hhhHHHHHhh
Confidence            6899999999999998876531        357788777 78899999999988864321          2456777888


Q ss_pred             hccCchhHHHHHHHHHHHHHHhhcccCcCcHHhHHHHHHHhccCCCHHHHHHHHHHHH
Q 046417          187 VRIEGFKAKAAVLGVIGSVVRVGGARSKGVLDWLVPCLVEFLCCDDWATRKAAAEVLG  244 (595)
Q Consensus       187 L~~~~~kaK~alLsAIgSlA~a~g~~~~~yl~~lmp~L~e~L~~dDW~~RkaAaEaLg  244 (595)
                      |++++..+|.+++.++|.+-          -+..+|.|.+++.++++.+|.+|+.+|.
T Consensus        62 l~d~~~~VR~~a~~aL~~i~----------~~~~~~~L~~ll~d~~~~vr~~A~~aL~  109 (111)
T d1te4a_          62 LEDDSGFVRSGAARSLEQIG----------GERVRAAMEKLAETGTGFARKVAVNYLE  109 (111)
T ss_dssp             HHHCCTHHHHHHHHHHHHHC----------SHHHHHHHHHHTTSCCTHHHHHHHHHGG
T ss_pred             hccchhHHHHHHHHHHHHhC----------ccchHHHHHHHHcCCCHHHHHHHHHHHH
Confidence            89999999999888888642          1467889999999999999999999875

>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Exportin Cse1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.18  E-value=6e-05  Score=82.48  Aligned_cols=193  Identities=8%  Similarity=0.073  Sum_probs=129.6

Q ss_pred             HHHHHHhhhhcC---CCCChHHHHHHHHHHHHHHHHccccchhhHHHHHHHHHhhccCCChhHHHHHHHHHHHhhhhhcC
Q 046417           55 FSSFLNCLQTTD---SSSKSPVRKQCVNLLTLLSRSHGDSLSPHLSKMISTVSCRLRDPDSSVRSACVAATTAMSLNITK  131 (595)
Q Consensus        55 lp~fL~~L~d~~---ss~kp~vRKaaI~lLG~lAEg~gd~I~PhLpkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~~  131 (595)
                      .+.|...+....   ....+..|..++.++|..+   .....++++.+++.+++.|+|++..||..|++|+..+......
T Consensus       453 ~~~l~~~v~~~l~~~~~~~~~lr~~~~~~i~~~~---~~~~~~~~~~~~~~l~~~L~~~~~~V~~~a~~al~~~~~~~~~  529 (959)
T d1wa5c_         453 VDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFR---NQLTKAQLIELMPILATFLQTDEYVVYTYAAITIEKILTIRES  529 (959)
T ss_dssp             HHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTG---GGSCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSC
T ss_pred             HHHHHHHHHHHHccCCCchHHHHHHHHHHHHHHH---hhccHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHhhcc
Confidence            344444443333   2233566766666655554   4445678999999999999999999999999999999976643


Q ss_pred             Cc----------chhccHHHHHHHhh---cCChhH-----HHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhh----cc
Q 046417          132 PS----------FSVLSKPLIELILV---EQDVNS-----QVGGAMCLAAAIDAAPNPEVEQLRKLLPRLGKAV----RI  189 (595)
Q Consensus       132 ~~----------~~~~l~PLi~aLl~---d~nk~V-----Q~~AA~cLaaviE~a~d~~~~~L~~Ll~rL~klL----~~  189 (595)
                      ..          +..++.+++..|+.   +.....     ......||..+++..++...+|...+++.|..++    ++
T Consensus       530 ~~~~~~~~~~~~l~p~l~~ll~~L~~~l~~~~~~~~~~~~~~~ll~~l~~ii~~~~~~~~~~~~~i~~~l~~~~~~~~~~  609 (959)
T d1wa5c_         530 NTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFPQLLAQFIEIVTIMAKN  609 (959)
T ss_dssp             SSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHHHHHHHHHHHHHHHTTS
T ss_pred             cccchhhccHHHHHhhHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            10          11256666555542   222222     2346677888888877777788888887777665    22


Q ss_pred             C-chhHHHHHHHHHHHHHHhhc-ccCcCcHHhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHh
Q 046417          190 E-GFKAKAAVLGVIGSVVRVGG-ARSKGVLDWLVPCLVEFLCCDDWATRKAAAEVLGKVAVFD  250 (595)
Q Consensus       190 ~-~~kaK~alLsAIgSlA~a~g-~~~~~yl~~lmp~L~e~L~~dDW~~RkaAaEaLgsIA~av  250 (595)
                      + .......++.+|+.++...+ ..+..+.+.++|.+...+..+.....-.+.+.+..+....
T Consensus       610 ~~~~~~~~~~~e~l~~l~~~~~~~~~~~l~~~l~p~i~~~~~~~~~~~~~~~~~l~~~~~~~~  672 (959)
T d1wa5c_         610 PSNPRFTHYTFESIGAILNYTQRQNLPLLVDSMMPTFLTVFSEDIQEFIPYVFQIIAFVVEQS  672 (959)
T ss_dssp             CCCHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHTTCTTTHHHHHHHHHHHHHHC
T ss_pred             ccchHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhC
Confidence            2 34456677889999887653 3446667888999999887655555566777777776554

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: MTH187
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=98.09  E-value=2.3e-06  Score=71.85  Aligned_cols=91  Identities=12%  Similarity=0.151  Sum_probs=70.1

Q ss_pred             CCcCcHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccchhhHHHHHHHHHhhccCCChhHHHHHHHHHHHhhhhh
Q 046417           50 LTQDSFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPHLSKMISTVSCRLRDPDSSVRSACVAATTAMSLNI  129 (595)
Q Consensus        50 L~~~~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~PhLpkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l  129 (595)
                      ++++.++.++..|.    +++|.+|.+++.+||.+..          ++.++.+++.|+|+++.||.+++++||.+... 
T Consensus        19 ~~~~~~~~L~~~l~----d~~~~vR~~a~~~L~~~~~----------~~~~~~L~~~l~d~~~~VR~~a~~aL~~i~~~-   83 (111)
T d1te4a_          19 MGDEAFEPLLESLS----NEDWRIRGAAAWIIGNFQD----------ERAVEPLIKLLEDDSGFVRSGAARSLEQIGGE-   83 (111)
T ss_dssp             CSSTTHHHHHHGGG----CSCHHHHHHHHHHHGGGCS----------HHHHHHHHHHHHHCCTHHHHHHHHHHHHHCSH-
T ss_pred             hCHHHHHHHHHHHc----CCCHHHHHHHHHHHHhcch----------hhhHHHHHhhhccchhHHHHHHHHHHHHhCcc-
Confidence            45566888777665    4679999999999875421          35678889999999999999999999998642 


Q ss_pred             cCCcchhccHHHHHHHhhcCChhHHHHHHHHHH
Q 046417          130 TKPSFSVLSKPLIELILVEQDVNSQVGGAMCLA  162 (595)
Q Consensus       130 ~~~~~~~~l~PLi~aLl~d~nk~VQ~~AA~cLa  162 (595)
                             -..|++..++.+.++.|+..|+.+|.
T Consensus        84 -------~~~~~L~~ll~d~~~~vr~~A~~aL~  109 (111)
T d1te4a_          84 -------RVRAAMEKLAETGTGFARKVAVNYLE  109 (111)
T ss_dssp             -------HHHHHHHHHTTSCCTHHHHHHHHHGG
T ss_pred             -------chHHHHHHHHcCCCHHHHHHHHHHHH
Confidence                   12455555558889999999988875

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.42  E-value=0.00073  Score=64.88  Aligned_cols=109  Identities=11%  Similarity=0.035  Sum_probs=82.3

Q ss_pred             HHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccchhhHH--HHHHHHHhhccCCChhHHHHHHHHHHHhhhhhcC-
Q 046417           55 FSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPHLS--KMISTVSCRLRDPDSSVRSACVAATTAMSLNITK-  131 (595)
Q Consensus        55 lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~PhLp--kIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~~-  131 (595)
                      ||.++..|..    +++.+|..+..+|+.+|.+..+ ....+-  ..+|.+++.|+++++.||.+|+++|+.|+..-.+ 
T Consensus         4 ip~lv~~L~~----~~~~~~~~a~~~l~~l~~~~~~-~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~   78 (457)
T d1xm9a1           4 IPKAVQYLSS----QDEKYQAIGAYYIQHTCFQDES-AKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTN   78 (457)
T ss_dssp             HHHHHHHHHS----SCTHHHHHHHHHHHHHTSSCSS-HHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHH
T ss_pred             HHHHHHHhCC----CCHHHHHHHHHHHHHHHcCCHH-HHHHHHHCCcHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHH
Confidence            7888888864    5699999999999999965432 222222  3478889999999999999999999999843210 


Q ss_pred             Ccch---hccHHHHHHHhhcCChhHHHHHHHHHHHHHhcC
Q 046417          132 PSFS---VLSKPLIELILVEQDVNSQVGGAMCLAAAIDAA  168 (595)
Q Consensus       132 ~~~~---~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a  168 (595)
                      ...+   -.+.+|+..+....+..++..|+.+|..+.+..
T Consensus        79 ~~~i~~~g~v~~li~~l~~~~~~~~~~~a~~~l~~l~~~~  118 (457)
T d1xm9a1          79 KLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTD  118 (457)
T ss_dssp             HHHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSS
T ss_pred             HHHHHHCCChHHHHHHHhccCcHHHHHHHHHHHHHHHhhh
Confidence            0111   157888888866778889999999999998764

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.33  E-value=0.00044  Score=66.47  Aligned_cols=147  Identities=12%  Similarity=0.064  Sum_probs=94.5

Q ss_pred             HHHHHhhccCCChhHHHHHHHHHHHhhhhhcCC-cch---hccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCCCchHHH
Q 046417          100 ISTVSCRLRDPDSSVRSACVAATTAMSLNITKP-SFS---VLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNPEVEQ  175 (595)
Q Consensus       100 L~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~~~-~~~---~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d~~~~~  175 (595)
                      ||.+++.|+++++.|+..++++|+.++..-.+. ..+   --+++|+..| .+.++.+|..|+.||..+....++.-..+
T Consensus         4 ip~lv~~L~~~~~~~~~~a~~~l~~l~~~~~~~~~~i~~~g~i~~Lv~lL-~~~~~~v~~~a~~aL~~L~~~~~~~~~~i   82 (457)
T d1xm9a1           4 IPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLL-RSPNQNVQQAAAGALRNLVFRSTTNKLET   82 (457)
T ss_dssp             HHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHT-TSSCHHHHHHHHHHHHHHHSSCHHHHHHH
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCcHHHHHHHH-CCCCHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence            789999999999999999999999998432110 111   1578888877 78899999999999999984321111112


Q ss_pred             HH-HHHHHHHHhhcc-CchhHHHHHHHHHHHHHHhhcccCcCcHHhHHHHHHHhc----------------cCCCHHHHH
Q 046417          176 LR-KLLPRLGKAVRI-EGFKAKAAVLGVIGSVVRVGGARSKGVLDWLVPCLVEFL----------------CCDDWATRK  237 (595)
Q Consensus       176 L~-~Ll~rL~klL~~-~~~kaK~alLsAIgSlA~a~g~~~~~yl~~lmp~L~e~L----------------~~dDW~~Rk  237 (595)
                      .. ..++.|++++.+ ....++..++.++..++...... .......++.+...+                ...+..++.
T Consensus        83 ~~~g~v~~li~~l~~~~~~~~~~~a~~~l~~l~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  161 (457)
T d1xm9a1          83 RRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELK-EELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFF  161 (457)
T ss_dssp             HHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTH-HHHHHHHHHHHHHHTTHHHHTCC---------CCCHHHHH
T ss_pred             HHCCChHHHHHHHhccCcHHHHHHHHHHHHHHHhhhhhH-HHHHhcccHHHHHHHHhhhhhhhcchhhhhcccccHHHHH
Confidence            22 146778887754 46667778888888877532211 111222233333222                234667777


Q ss_pred             HHHHHHHHHHH
Q 046417          238 AAAEVLGKVAV  248 (595)
Q Consensus       238 aAaEaLgsIA~  248 (595)
                      .++.+|..++.
T Consensus       162 ~a~~~l~~~~~  172 (457)
T d1xm9a1         162 NATGCLRNLSS  172 (457)
T ss_dssp             HHHHHHHHHTT
T ss_pred             HHHHHHHHHhc
Confidence            78888877654

>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Leucine-rich repeat variant
domain: Leucine-rich repeat variant
species: Azotobacter vinelandii [TaxId: 354]

Probab=96.81  E-value=0.00021  Score=68.83  Aligned_cols=44  Identities=30%  Similarity=0.346  Sum_probs=29.9

Q ss_pred             HHHHHhccCCCHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHhccCCchHHHHHHHHHH
Q 046417          222 PCLVEFLCCDDWATRKAAAEVLGKVAVFDKDLATEYKRSCLAALETRRFDKVKIVRETMNRS  283 (595)
Q Consensus       222 p~L~e~L~~dDW~~RkaAaEaLgsIA~avge~f~py~~~~I~~Le~crfDKVK~VRda~~~a  283 (595)
                      +.|..++.|++|.+|.++++.++              ...+..|.    |.-..||.++.+.
T Consensus       189 ~~L~~l~~D~d~~VR~aaae~~~--------------~~ll~~L~----D~d~~VR~aA~~~  232 (233)
T d1lrva_         189 DDLLELLHDPDWTVRLAAVEHAS--------------LEALRELD----EPDPEVRLAIAGR  232 (233)
T ss_dssp             GGGGGGGGCSSHHHHHHHHHHSC--------------HHHHHHCC----CCCHHHHHHHHCC
T ss_pred             HHHHHHHhCCCHHHHHHHHHhcc--------------HHHHHHhC----CCCHHHHHHHHHh
Confidence            44666777888999888876432              12334443    8899999988654

>d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Lipovitellin-phosvitin complex, superhelical domain
family: Lipovitellin-phosvitin complex, superhelical domain
domain: Lipovitellin-phosvitin complex, superhelical domain
species: Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]

Probab=94.58  E-value=0.3  Score=48.17  Aligned_cols=195  Identities=13%  Similarity=-0.026  Sum_probs=116.1

Q ss_pred             hHHHHHHHHHHHHHhCCcCc--HHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccc----cchhhHHHHHHHHHhhcc
Q 046417           35 TLPVATAELESIARTLTQDS--FSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGD----SLSPHLSKMISTVSCRLR  108 (595)
Q Consensus        35 T~r~A~~~LD~lA~~L~~~~--lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd----~I~PhLpkIL~~IvrrLk  108 (595)
                      +..-|...|-.++....|..  +..++..+.......++.+|+.++++||.++..+..    .-..++..+..++.+.+.
T Consensus       103 s~~ea~~~l~~l~~~~~Pt~~~l~~~~~l~~~~~~~~~~~l~~~a~La~gslv~~~c~~~~~~~~~~~~~l~~~l~~~~~  182 (336)
T d1lsha1         103 TSAEATQIVASTLSNQQATRESLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSD  182 (336)
T ss_dssp             CHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHhccCCCCHHHHHHHHHHHcCcccccchhHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhc
Confidence            44556666667776554433  666666665433334689999999999999987641    113345555666667777


Q ss_pred             CCChhHHHHHHHHHHHhhhhhcCCcchhccHHHHHHHhh------cCChhHHHHHHHHHHHHHhcCCCchHHHHHHHHHH
Q 046417          109 DPDSSVRSACVAATTAMSLNITKPSFSVLSKPLIELILV------EQDVNSQVGGAMCLAAAIDAAPNPEVEQLRKLLPR  182 (595)
Q Consensus       109 D~ds~VR~Ac~~aLg~LA~~l~~~~~~~~l~PLi~aLl~------d~nk~VQ~~AA~cLaaviE~a~d~~~~~L~~Ll~r  182 (595)
                      ..+..-...+..+||-+...-       .++.|...+.+      +....+...|..||..+....+    .....   -
T Consensus       183 ~~~~~~~~~~LkaLGN~g~p~-------~i~~l~~~l~~~~~~~~~~~~~vR~aAi~Alr~~~~~~p----~~v~~---~  248 (336)
T d1lsha1         183 RAKEEEIVLALKALGNAGQPN-------SIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDP----RKVQE---I  248 (336)
T ss_dssp             TTCHHHHHHHHHHHHHHTCGG-------GHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCH----HHHHH---H
T ss_pred             ccchHHHHHHHHHHhccCCHh-------HHHHHHHHhcccccccccccHHHHHHHHHHHHHhhhcCc----HHHHH---H
Confidence            778778889999999887421       22333333422      2245688888888877654321    12222   2


Q ss_pred             HHHhhc--cCchhHHHHHHHHHHHHHHhhcccCcCcHHhHHHHHHHhc-cCCCHHHHHHHHHHHHHHHHHhHH
Q 046417          183 LGKAVR--IEGFKAKAAVLGVIGSVVRVGGARSKGVLDWLVPCLVEFL-CCDDWATRKAAAEVLGKVAVFDKD  252 (595)
Q Consensus       183 L~klL~--~~~~kaK~alLsAIgSlA~a~g~~~~~yl~~lmp~L~e~L-~~dDW~~RkaAaEaLgsIA~avge  252 (595)
                      +..++.  ..+..+|.+++.++=   .     ..|. ...+..+..++ .+.+-+++....-.|-.++..-..
T Consensus       249 l~~i~~n~~e~~EvRiaA~~~lm---~-----t~P~-~~~l~~i~~~l~~E~~~QV~sfv~S~l~~la~s~~P  312 (336)
T d1lsha1         249 VLPIFLNVAIKSELRIRSCIVFF---E-----SKPS-VALVSMVAVRLRREPNLQVASFVYSQMRSLSRSSNP  312 (336)
T ss_dssp             HHHHHHCTTSCHHHHHHHHHHHH---H-----TCCC-HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCCSG
T ss_pred             HHHHHcCCCCChHHHHHHHHHHH---h-----cCCC-HHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhCCCc
Confidence            233332  336777766544332   1     1233 23556666665 456778777777777777664433

>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Leucine-rich repeat variant
domain: Leucine-rich repeat variant
species: Azotobacter vinelandii [TaxId: 354]

Probab=94.42  E-value=0.0048  Score=59.01  Aligned_cols=140  Identities=19%  Similarity=0.142  Sum_probs=72.6

Q ss_pred             HHHhhccCCChhHHHHHHHHHHHhhhhhcCCcchhccHHHHHHHhhcCChhHHHHHHHHHHH-HHhc-CCCchHHHHHHH
Q 046417          102 TVSCRLRDPDSSVRSACVAATTAMSLNITKPSFSVLSKPLIELILVEQDVNSQVGGAMCLAA-AIDA-APNPEVEQLRKL  179 (595)
Q Consensus       102 ~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~~~~~~~~l~PLi~aLl~d~nk~VQ~~AA~cLaa-viE~-a~d~~~~~L~~L  179 (595)
                      .+.+.++|+|+.||.+++..|+.               ..+..|+.|.+..|...++..|.. .+.. +.+.. ..+...
T Consensus        70 ~L~~Ll~D~d~~VR~~AA~~Lp~---------------~~L~~L~~D~d~~VR~~aa~~l~~~~L~~Ll~D~d-~~VR~~  133 (233)
T d1lrva_          70 ALTPLIRDSDEVVRRAVAYRLPR---------------EQLSALMFDEDREVRITVADRLPLEQLEQMAADRD-YLVRAY  133 (233)
T ss_dssp             GGGGGTTCSSHHHHHHHHTTSCS---------------GGGGGTTTCSCHHHHHHHHHHSCTGGGGGGTTCSS-HHHHHH
T ss_pred             HHHHHhcCCCHHHHHHHHHHcCH---------------HHHHHHhcCCChhHHHHHHhccCHHHHHHHhcCCC-HHHHHH
Confidence            56678999999999999866431               112233356666666555543310 0000 01110 011100


Q ss_pred             -H-----HHHHHhhccCchhHHHHHHHHHHHHHHhhcccCcCcHHhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhHHh
Q 046417          180 -L-----PRLGKAVRIEGFKAKAAVLGVIGSVVRVGGARSKGVLDWLVPCLVEFLCCDDWATRKAAAEVLGKVAVFDKDL  253 (595)
Q Consensus       180 -l-----~rL~klL~~~~~kaK~alLsAIgSlA~a~g~~~~~yl~~lmp~L~e~L~~dDW~~RkaAaEaLgsIA~avge~  253 (595)
                       .     +-|..+++++...++.++...+       +          .+.|..++.|+++.+|..+++.|+.        
T Consensus       134 aa~~~~~~~L~~L~~D~d~~VR~~aA~~~-------~----------~~~L~~l~~D~d~~VR~~aa~~L~~--------  188 (233)
T d1lrva_         134 VVQRIPPGRLFRFMRDEDRQVRKLVAKRL-------P----------EESLGLMTQDPEPEVRRIVASRLRG--------  188 (233)
T ss_dssp             HHHHSCGGGGGGTTTCSCHHHHHHHHHHS-------C----------GGGGGGSTTCSSHHHHHHHHHHCCG--------
T ss_pred             HHhccchhHHHHHhcCCCHHHHHHHHHhc-------C----------HHHHHHHccCCCHHHHHHHHHhcCc--------
Confidence             0     1122344455555544332110       0          2345566778899999888876641        


Q ss_pred             HHHHHHHHHHHHHhccCCchHHHHHHHHHHH--HHhHhcC
Q 046417          254 ATEYKRSCLAALETRRFDKVKIVRETMNRSL--EMWKEVP  291 (595)
Q Consensus       254 f~py~~~~I~~Le~crfDKVK~VRda~~~aL--~~~K~i~  291 (595)
                               ..|...--|+-..||-++.+.+  ++++.+.
T Consensus       189 ---------~~L~~l~~D~d~~VR~aaae~~~~~ll~~L~  219 (233)
T d1lrva_         189 ---------DDLLELLHDPDWTVRLAAVEHASLEALRELD  219 (233)
T ss_dssp             ---------GGGGGGGGCSSHHHHHHHHHHSCHHHHHHCC
T ss_pred             ---------HHHHHHHhCCCHHHHHHHHHhccHHHHHHhC
Confidence                     1233333488899999888763  3444443

>d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Lipovitellin-phosvitin complex, superhelical domain
family: Lipovitellin-phosvitin complex, superhelical domain
domain: Lipovitellin-phosvitin complex, superhelical domain
species: Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]

Probab=92.91  E-value=4.1  Score=39.65  Aligned_cols=182  Identities=12%  Similarity=0.055  Sum_probs=105.9

Q ss_pred             HHHHHHHHHhCCcCcHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccchhhHHHHHHHHHhhccCCChhHHHHHH
Q 046417           40 TAELESIARTLTQDSFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPHLSKMISTVSCRLRDPDSSVRSACV  119 (595)
Q Consensus        40 ~~~LD~lA~~L~~~~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~PhLpkIL~~IvrrLkD~ds~VR~Ac~  119 (595)
                      ...|-.+.+.++.+.|..+...+..     ++..|+--+-+++.+..   .       .-+.++...+...+-..-+|..
T Consensus        45 F~~Lv~~lR~~~~e~l~~v~~~~~~-----~~~~r~~~lDal~~~GT---~-------~a~~~i~~~I~~~~ls~~ea~~  109 (336)
T d1lsha1          45 FLRLTAFLRNVDAGVLQSIWHKLHQ-----QKDYRRWILDAVPAMAT---S-------EALLFLKRTLASEQLTSAEATQ  109 (336)
T ss_dssp             HHHHHHHHTTSCHHHHHHHHHHHTT-----SHHHHHHHHHHHHHHCS---H-------HHHHHHHHHHHTTCSCHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHhc-----ChhHHHHHHHHHHHhCC---H-------HHHHHHHHHHHcCCCCHHHHHH
Confidence            4455666777777778877777643     35667654444433322   2       2233455555555544444443


Q ss_pred             HHHHHhhhhhcCCcchhccHHHHHHHh---hcCChhHHHHHHHHHHHHHhcC----CCchHHHHHHHHHHHHHhhccCch
Q 046417          120 AATTAMSLNITKPSFSVLSKPLIELIL---VEQDVNSQVGGAMCLAAAIDAA----PNPEVEQLRKLLPRLGKAVRIEGF  192 (595)
Q Consensus       120 ~aLg~LA~~l~~~~~~~~l~PLi~aLl---~d~nk~VQ~~AA~cLaaviE~a----~d~~~~~L~~Ll~rL~klL~~~~~  192 (595)
                       +|..++... + |-..++.-+++.+.   ..+++.+...+.+++..++-..    ..-..++++.|...+.+.++....
T Consensus       110 -~l~~l~~~~-~-Pt~~~l~~~~~l~~~~~~~~~~~l~~~a~La~gslv~~~c~~~~~~~~~~~~~l~~~l~~~~~~~~~  186 (336)
T d1lsha1         110 -IVASTLSNQ-Q-ATRESLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDRAKE  186 (336)
T ss_dssp             -HHHHHHHTC-C-CCHHHHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHTTCH
T ss_pred             -HHHHHhccC-C-CCHHHHHHHHHHHcCcccccchhHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhcccch
Confidence             444555432 2 22223333333331   1356778888999988887651    122245677777777788888777


Q ss_pred             hHHHHHHHHHHHHHHhhcccCcCcHHhHHHHHHHhccC-------CCHHHHHHHHHHHHHHHHH
Q 046417          193 KAKAAVLGVIGSVVRVGGARSKGVLDWLVPCLVEFLCC-------DDWATRKAAAEVLGKVAVF  249 (595)
Q Consensus       193 kaK~alLsAIgSlA~a~g~~~~~yl~~lmp~L~e~L~~-------dDW~~RkaAaEaLgsIA~a  249 (595)
                      ..+...|-+||-+   |-       +..++.|..++.+       ..-.+|.+|+.+|..++..
T Consensus       187 ~~~~~~LkaLGN~---g~-------p~~i~~l~~~l~~~~~~~~~~~~~vR~aAi~Alr~~~~~  240 (336)
T d1lsha1         187 EEIVLALKALGNA---GQ-------PNSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKR  240 (336)
T ss_dssp             HHHHHHHHHHHHH---TC-------GGGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGT
T ss_pred             HHHHHHHHHHhcc---CC-------HhHHHHHHHHhcccccccccccHHHHHHHHHHHHHhhhc
Confidence            7777777788743   21       3345666666532       2467888888888877653

>d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Mo25 protein
domain: Mo25 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.71  E-value=19  Score=35.02  Aligned_cols=198  Identities=9%  Similarity=0.050  Sum_probs=122.4

Q ss_pred             CCChHHHHHHHHHHHHHHHHcc-------ccchhhHHHHHHHHHhhccCCChhHHHHHHHHHHHhhhhhcCCcc------
Q 046417           68 SSKSPVRKQCVNLLTLLSRSHG-------DSLSPHLSKMISTVSCRLRDPDSSVRSACVAATTAMSLNITKPSF------  134 (595)
Q Consensus        68 s~kp~vRKaaI~lLG~lAEg~g-------d~I~PhLpkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~~~~~------  134 (595)
                      .-+...||.+...++.+.+--.       +++..| |+|+..+++.-.++|...      +.|.|-+.+++-+.      
T Consensus        80 ~L~fE~RKD~~~if~~llR~~~~~~~p~v~Yl~~~-~eil~~L~~gye~~eiAl------~~G~mLREcik~e~lak~iL  152 (330)
T d1upka_          80 LIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQ-QNILFMLLKGYESPEIAL------NCGIMLRECIRHEPLAKIIL  152 (330)
T ss_dssp             GSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTC-THHHHHHHHGGGSTTTHH------HHHHHHHHHHTSHHHHHHHH
T ss_pred             CCCCchhhhHHHHHHHHhhcCCCCCCccHHHHHcC-HHHHHHHHhhcCCcchhh------hhhHHHHHHHhhHHHHHHHH
Confidence            3568999999999999988553       556555 689999999999988543      22444444443210      


Q ss_pred             h-hccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCCCchHHHH----HHHHHHHHHhhccCchhHHHHHHHHHHHHHH--
Q 046417          135 S-VLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNPEVEQL----RKLLPRLGKAVRIEGFKAKAAVLGVIGSVVR--  207 (595)
Q Consensus       135 ~-~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d~~~~~L----~~Ll~rL~klL~~~~~kaK~alLsAIgSlA~--  207 (595)
                      . ..+..+|+.+ .-++-.+...|..-+..+.-.-+....+||    +.+...+-++|.+++|-+|-+.+-.+|-+.-  
T Consensus       153 ~s~~f~~fF~yv-~~~~FdiasDAf~TfkelLt~hk~~~aefl~~Nyd~Ff~~~~~LL~s~NYVtrRqSlKLLgelLldr  231 (330)
T d1upka_         153 WSEQFYDFFRYV-EMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLKLLGELLLDR  231 (330)
T ss_dssp             HSGGGGHHHHHT-TCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHSG
T ss_pred             ccHHHHHHHHHH-cCCchHHHHHHHHHHHHHHHhCHHHHHHHHHHhHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhh
Confidence            0 1455566655 334433444443333333322122224555    4577888899999999999999999998874  


Q ss_pred             hhcccCcCcH--HhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHh------HHhHHHHHHHHHHHHHhccCCch
Q 046417          208 VGGARSKGVL--DWLVPCLVEFLCCDDWATRKAAAEVLGKVAVFD------KDLATEYKRSCLAALETRRFDKV  273 (595)
Q Consensus       208 a~g~~~~~yl--~~lmp~L~e~L~~dDW~~RkaAaEaLgsIA~av------ge~f~py~~~~I~~Le~crfDKV  273 (595)
                      +.-.-...|+  ..-+-.+...|.|+.-..+..|.-..-.....-      -+.+..=....+++|..+..||-
T Consensus       232 ~N~~vm~~Yvs~~~nLkl~M~LLrd~sk~Iq~EAFhVFKvFVANpnKp~~I~~IL~~Nr~kLl~fl~~f~~d~~  305 (330)
T d1upka_         232 HNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPNKTQPILDILLKNQAKLIEFLSKFQNDRT  305 (330)
T ss_dssp             GGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHTHHHHHHHHHHTTTTC-
T ss_pred             hHHHHHHHHhCCHHHHHHHHHHhcCchhhHHHHhhhHhhhhhcCCCCCHHHHHHHHHhHHHHHHHHHhCCCCCC
Confidence            2111122333  334556666777877677777766665554321      12333345788889998888873