Citrus Sinensis ID: 046420

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------7
Protein Sequence
MNGRQGVQRSGAAGVQVHHQRQWSSEKFLESSSNGRWLQSAWLQHLQQSSATGTIPPLQVSIFEVLSLF
Secondary Structure (PSIPRED)
cccccccccccccccHHHHHHHcccccHHccccccHHHHHHHHHHHHHccccccccccEEEHHHHHccc
Secondary Structure Prediction (SSPRO)
ccccccEEEccccEEEEccccccccccccccccccHHHHHHHHHHHHHccccccccccEEEHHHHHccc
Coil and Loop (DISEMBL)
mngrqgvqrsgaagvqvhhqrqwssekflesssnGRWLQSAWLQHLQqssatgtipplqVSIFEVLSLF
Flexible Loop (DISEMBL)
mngrqgvqrsgaagvqvhhqrqWSSEKFLESSSNGRWLQSAWLQHLQQSsatgtippLQVSIFEVLSLF
Low Complexity Region (SEG)
MNGRQGVQRSGAAGVQVHHQRQWSSEKFLESSSNGRWLQSAWLQHLQQSSATGTIPPLQVSIFEVLSLF
Disordered region (IsUnstruct)
***********************************RWLQSAWLQHLQQ**ATGTIPPLQVSIFEVL***
Disordered Region (DISOPRED)
**********************WSS**FLESSSNGRWLQSAWL*************PLQVSIFEVLSLF
Disordered Region (DISEMBL)
**********************************GRWLQSAWLQHLQQSSATGTIPPLQVSIFEVLSLF
Disordered Region (DISPRO)
******VQRSGAAGVQVHHQRQWSSEKFLESSSNGRWLQSA**QHLQQSSATGTIPPLQVSIFEVLSLF
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MNGRQGVQRSGAAGVQVHHQRQWSSEKFLESSSNGRWLQSAWLQHLQQSSATGTIPPLQVSIFEVLSLF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	69
356556177	701	PREDICTED: kinesin-like protein KIF2A-li	0.739	0.072	0.706	9e-10
356550537	701	PREDICTED: kinesin-like protein KIF2A-li	0.739	0.072	0.689	3e-09
255550012	712	kif4, putative [Ricinus communis] gi|223	0.594	0.057	0.720	2e-08
13536983	703	BY-2 kinesin-like protein 10 [Nicotiana	0.710	0.069	0.629	7e-08
359482934	717	PREDICTED: kinesin-like protein KIF2A-li	0.724	0.069	0.614	2e-07
357454965	700	BY-inesin-like protein [Medicago truncat	0.739	0.072	0.586	3e-07
297830186	688	kinesin motor family protein [Arabidopsi	0.652	0.065	0.64	2e-06
297788253	70	hypothetical protein ARALYDRAFT_920994 [	0.652	0.642	0.64	1e-05
18401002	684	kinesin family member 2/24 [Arabidopsis	0.652	0.065	0.6	7e-05
9294452	706	unnamed protein product [Arabidopsis tha	0.652	0.063	0.6	8e-05

>gi|356556177|ref|XP_003546403.1| PREDICTED: kinesin-like protein KIF2A-like [Glycine max]

 Score = 67.4 bits (163), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 41/58 (70%), Positives = 46/58 (79%), Gaps = 7/58 (12%)

Query: 3  GRQGVQRSGAAGVQVHHQRQWSSEKFLESSSNG-RWLQSAWLQHLQQSSATGTIPPLQ 59
          GRQG+ RSGAAGV  HHQRQ+S + FL+SSSNG RWLQSA LQHLQ SS    +PPLQ
Sbjct: 5  GRQGL-RSGAAGV--HHQRQYS-DNFLDSSSNGNRWLQSAGLQHLQSSS--NQLPPLQ 56

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356550537|ref|XP_003543642.1| PREDICTED: kinesin-like protein KIF2A-like [Glycine max]

 Score = 65.9 bits (159), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 40/58 (68%), Positives = 45/58 (77%), Gaps = 7/58 (12%)

Query: 3  GRQGVQRSGAAGVQVHHQRQWSSEKFLESSSNG-RWLQSAWLQHLQQSSATGTIPPLQ 59
          GRQG+ RSGAAGV  HHQRQ+S + FL+ SSNG RWLQSA LQHLQ SS    +PPLQ
Sbjct: 5  GRQGL-RSGAAGV--HHQRQYS-DNFLDGSSNGNRWLQSAGLQHLQSSS--NQLPPLQ 56

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255550012|ref|XP_002516057.1| kif4, putative [Ricinus communis] gi|223544962|gb|EEF46477.1| kif4, putative [Ricinus communis]

 Score = 63.2 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 31/43 (72%), Positives = 38/43 (88%), Gaps = 2/43 (4%)

Query: 17 VHHQRQWSSEKFLESSSNGRWLQSAWLQHLQQSSATGTIPPLQ 59
          VHHQRQ+S + FL++SSNGRWLQSA LQHLQ SS++ +IPPLQ
Sbjct: 18 VHHQRQYS-DNFLDTSSNGRWLQSAGLQHLQNSSSS-SIPPLQ 58

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|13536983|dbj|BAB40710.1| BY-2 kinesin-like protein 10 [Nicotiana tabacum]

 Score = 61.2 bits (147), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 34/54 (62%), Positives = 40/54 (74%), Gaps = 5/54 (9%)

Query: 6  GVQRSGAAGVQVHHQRQWSSEKFLESSSNGRWLQSAWLQHLQQSSATGTIPPLQ 59
          G QRSG +    HHQRQ+S + FLE+SSNGRWLQSA LQHLQ S+   +IPP Q
Sbjct: 5  GRQRSGTS--TAHHQRQYS-DNFLENSSNGRWLQSAGLQHLQTSNT--SIPPPQ 53

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359482934|ref|XP_002284593.2| PREDICTED: kinesin-like protein KIF2A-like [Vitis vinifera] gi|297743274|emb|CBI36141.3| unnamed protein product [Vitis vinifera]

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 35/57 (61%), Positives = 44/57 (77%), Gaps = 7/57 (12%)

Query: 3  GRQGVQRSGAAGVQVHHQRQWSSEKFLESSSNGRWLQSAWLQHLQQSSATGTIPPLQ 59
          GRQ  QRSGA+ +   HQRQ+S E F+++SSNGRWLQSA LQHLQ S+A  ++P LQ
Sbjct: 5  GRQA-QRSGASTM---HQRQYS-ENFIDASSNGRWLQSAGLQHLQSSNA--SVPSLQ 54

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357454965|ref|XP_003597763.1| BY-inesin-like protein [Medicago truncatula] gi|355486811|gb|AES68014.1| BY-inesin-like protein [Medicago truncatula]

 Score = 58.9 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 34/58 (58%), Positives = 40/58 (68%), Gaps = 7/58 (12%)

Query: 3  GRQGVQRSGAAGVQVHHQRQWSSEKFLESSSNG-RWLQSAWLQHLQQSSATGTIPPLQ 59
          GRQG+ RSG     VHHQRQ+S E FL+ ++ G RWLQSA LQHLQ S+A     PLQ
Sbjct: 5  GRQGL-RSGGGATGVHHQRQYS-ENFLDGATTGNRWLQSAGLQHLQSSAAN----PLQ 56

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297830186|ref|XP_002882975.1| kinesin motor family protein [Arabidopsis lyrata subsp. lyrata] gi|297328815|gb|EFH59234.1| kinesin motor family protein [Arabidopsis lyrata subsp. lyrata]

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 32/50 (64%), Positives = 33/50 (66%), Gaps = 5/50 (10%)

Query: 1  MNGRQGVQRSGAAGVQVHHQRQWSSEKFLESSSNGRWLQSAWLQHLQQSS 50
          MNGRQ   RSGAA V  HHQRQ S      SSSNGRWLQS  LQH Q S+
Sbjct: 1  MNGRQ---RSGAAAV--HHQRQLSDNPLDMSSSNGRWLQSTGLQHFQSSA 45

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297788253|ref|XP_002862266.1| hypothetical protein ARALYDRAFT_920994 [Arabidopsis lyrata subsp. lyrata] gi|297307589|gb|EFH38524.1| hypothetical protein ARALYDRAFT_920994 [Arabidopsis lyrata subsp. lyrata]

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 32/50 (64%), Positives = 33/50 (66%), Gaps = 5/50 (10%)

Query: 1  MNGRQGVQRSGAAGVQVHHQRQWSSEKFLESSSNGRWLQSAWLQHLQQSS 50
          MNGRQ   RSGAA V  HHQRQ S      SSSNGRWLQS  LQH Q S+
Sbjct: 1  MNGRQ---RSGAAAV--HHQRQLSDNPLDMSSSNGRWLQSTGLQHFQSSA 45

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18401002|ref|NP_566534.1| kinesin family member 2/24 [Arabidopsis thaliana] gi|15450501|gb|AAK96543.1| AT3g16060/MSL1_10 [Arabidopsis thaliana] gi|16974325|gb|AAL31147.1| AT3g16060/MSL1_10 [Arabidopsis thaliana] gi|332642246|gb|AEE75767.1| kinesin family member 2/24 [Arabidopsis thaliana]

 Score = 51.2 bits (121), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 30/50 (60%), Positives = 32/50 (64%), Gaps = 5/50 (10%)

Query: 1  MNGRQGVQRSGAAGVQVHHQRQWSSEKFLESSSNGRWLQSAWLQHLQQSS 50
          M+GRQ   RS AA V  HHQRQ S      SSSNGRWLQS  LQH Q S+
Sbjct: 1  MSGRQ---RSVAAAV--HHQRQLSDNPLDMSSSNGRWLQSTGLQHFQSSA 45

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|9294452|dbj|BAB02671.1| unnamed protein product [Arabidopsis thaliana]

 Score = 51.2 bits (121), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 30/50 (60%), Positives = 32/50 (64%), Gaps = 5/50 (10%)

Query: 1  MNGRQGVQRSGAAGVQVHHQRQWSSEKFLESSSNGRWLQSAWLQHLQQSS 50
          M+GRQ   RS AA V  HHQRQ S      SSSNGRWLQS  LQH Q S+
Sbjct: 1  MSGRQ---RSVAAAV--HHQRQLSDNPLDMSSSNGRWLQSTGLQHFQSSA 45

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	69
TAIR|locus:2093382	684	AT3G16060 [Arabidopsis thalian	0.652	0.065	0.6	2.2e-06

TAIR|locus:2093382 AT3G16060 [Arabidopsis thaliana (taxid:3702)]

 Score = 120 (47.3 bits), Expect = 2.2e-06, P = 2.2e-06
 Identities = 30/50 (60%), Positives = 32/50 (64%)

Query:     1 MNGRQGVQRSGAAGVQVHHQRQWSSEKFLESSSNGRWLQSAWLQHLQQSS 50
             M+GRQ   RS AA V  HHQRQ S      SSSNGRWLQS  LQH Q S+
Sbjct:     1 MSGRQ---RSVAAAV--HHQRQLSDNPLDMSSSNGRWLQSTGLQHFQSSA 45


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.316   0.126   0.383    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       69        69   0.00091  102 3  11 22  0.46    28
                                                     29  0.39    29


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  518 (55 KB)
  Total size of DFA:  104 KB (2072 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  8.67u 0.13s 8.80t   Elapsed:  00:00:01
  Total cpu time:  8.67u 0.13s 8.80t   Elapsed:  00:00:01
  Start:  Sat May 11 11:22:23 2013   End:  Sat May 11 11:22:24 2013

GO:0003777 "microtubule motor activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0007018 "microtubule-based movement" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

No confident hit detected by STRING

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

No hit with probability above 80.00

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00