Citrus Sinensis ID: 046439

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------27
Protein Sequence
MGRPLFYEIMEKPATSCIIGICSVIWFYIQKKNIGYSHVGLSYETAVDGHHWRIITSAFSHISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPFESLIFTSIIVPQASFLGHLSGIIVGYAIAWGLIHGMNNYWALSMLGWIVLVFVYSLKRSGTYDFNFLEIESVTDPSLPSVRFIGNGRTLQMSAIPVEGVEIV
Secondary Structure (PSIPRED)
ccccHHHHHcccHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHccccHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEEEccHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHcccccccccEEEEcccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccHHHHHHcccHHHHHHHHHHHHHHHHccccccHHHccccHHHHHcccEEEEEEcHHHcccHHHHHHHHHHHHHcccHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHccEEcHHHHHHHHHHHHHcccccccEEEEEEEcccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHcccccccEEEEEcccccccccEEEEEcccEEEEcccccccEEEc
Coil and Loop (DISEMBL)
MGRPLFYEimekpatsciiGICSVIWFYIQKKnigyshvglsyetavdghHWRIITSAFSHISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILsvkqpsskldlfgflslpisfapfeslIFTSIIvpqasflghLSGIIVGYAIAWGLIHGMNNYWALSMLGWIVLVFVYSLkrsgtydfnfleiesvtdpslpsvrfigngrtlqmsaipvegveiv
Flexible Loop (DISEMBL)
MGRPLFYEIMEKPATSCIIGICSVIWFYIQKKNIGYSHVGLSYETAVDGHHWRIITSAFSHISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPFESLIFTSIIVPQASFLGHLSGIIVGYAIAWGLIHGMNNYWALSMLGWIVLVFVYSLKRSGTYDFNFLeiesvtdpslpSVRFIGNgrtlqmsaipvegveiv
Low Complexity Region (SEG)
MGRPLFYEIMEKPATSCIIGICSVIWFYIQKKNIGYSHVGLSYETAVDGHHWRIITSAFSHISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQYTlvlvvlsgllvlgIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPFESLIFTSIIVPQASFLGHLSGIIVGYAIAWGLIHGMNNYWALSMLGWIVLVFVYSLKRSGTYDFNFLEIESVTDPSLPSVRFIGNGRTLQMSAIPVEGVEIV
Disordered region (IsUnstruct)
****LFYEIMEKPATSCIIGICSVIWFYIQKKNIGYSHVGLSYETAVDGHHWRIITSAFSHISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPFESLIFTSIIVPQASFLGHLSGIIVGYAIAWGLIHGMNNYWALSMLGWIVLVFVYSLKRSGTYDFNFLEIESVTDPSLPSVRFIGNGRTLQM***********
Disordered Region (DISOPRED)
***PL**EIMEKPATSCIIGICSVIWFYIQKKNIGYSHVGLSYETAVDGHHWRIITSAFSHISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPFESLIFTSIIVPQASFLGHLSGIIVGYAIAWGLIHGMNNYWALSMLGWIVLVFVYSLKRSGTYDFNF**************************AIPVEGVEIV
Disordered Region (DISEMBL)
MGRPLFYEIMEKPATSCIIGICSVIWFYIQKKNIGYSHVGLSYETAVDGHHWRIITSAFSHISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPFESLIFTSIIVPQASFLGHLSGIIVGYAIAWGLIHGMNNYWALSMLGWIVLVFVYSLKRSGTYDFNFLEIESVTDPSLPSVRFIGNGRTLQMSAIPVEGVEIV
Disordered Region (DISPRO)
*GRPLFYEIMEKPATSCIIGICSVIWFYIQKKNIGYSHVGLSYETAVDGHHWRIITSAFSHISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPFESLIFTSIIVPQASFLGHLSGIIVGYAIAWGLIHGMNNYWALSMLGWIVLVFVYSLKRSGTYDFNFLEIESVTDPSLPSVRFIGNGRTLQMSAIPVEGVEIV
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGRPLFYEIMEKPATSCIIGICSVIWFYIQKKNIGYSHVGLSYETAVDGHHWRIITSAFSHISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPFESLIFTSIIVPQASFLGHLSGIIVGYAIAWGLIHGMNNYWALSMLGWIVLVFVYSLKRSGTYDFNFLEIESVTDPSLPSVRFIGNGRTLQMSAIPVEGVEIV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	269	2.2.26 [Sep-21-2011]
Q8TEB9	315	Rhomboid-related protein	yes	no	0.602	0.514	0.305	4e-10
O74926	251	Rhomboid protein 2 OS=Sch	yes	no	0.520	0.557	0.310	2e-09
Q8BHC7	315	Rhomboid-related protein	yes	no	0.602	0.514	0.288	3e-09
Q5RBS4	318	Rhomboid-related protein	yes	no	0.602	0.509	0.294	7e-09
Q4V8F3	316	Rhomboid-related protein	yes	no	0.602	0.512	0.288	1e-08
Q6FSG0	266	Rhomboid protein 2 OS=Can	yes	no	0.472	0.477	0.344	6e-08
Q8RXW0	334	Uncharacterized protein A	no	no	0.501	0.404	0.312	8e-08
Q8LB17	403	Uncharacterized protein A	no	no	0.758	0.506	0.231	1e-07
Q12270	262	Rhomboid protein 2 OS=Sac	yes	no	0.550	0.564	0.279	4e-05
Q6BSA9	286	Rhomboid protein 2 OS=Deb	yes	no	0.479	0.451	0.290	0.0002

>sp|Q8TEB9|RHBL4_HUMAN Rhomboid-related protein 4 OS=Homo sapiens GN=RHBDD1 PE=1 SV=1

 Score = 65.5 bits (158), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 52/170 (30%), Positives = 82/170 (48%), Gaps = 8/170 (4%)

Query: 25  IWFYIQKKNIGYSHVGLSYETAVDGHHW-RIITSAFSHISVLHLVFNM-SALWSLGVVEQ 82
           IWF++  +   YS   LS E       W R++ S   H    HL FNM S LW    +E+
Sbjct: 39  IWFFLNPQKPLYSSC-LSVEKCYQQKDWQRLLLSPLHHADDWHLYFNMASMLWKGINLER 97

Query: 83  LGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTI 142
                LG+ ++        VL+G++ L +   + +      F+R  AVG+S V+F    +
Sbjct: 98  R----LGSRWFAYVITAFSVLTGVVYLLLQFAVAEFMDEPDFKRSCAVGFSGVLFALKVL 153

Query: 143 LSVKQPSSKLDLFGFLSLPISFAPFESLIFTSIIVPQASFLGHLSGIIVG 192
            +   P   +++ GF  +P  FA +  L+   +  P  SF GHL+GI+VG
Sbjct: 154 NNHYCPGGFVNILGF-PVPNRFACWVELVAIHLFSPGTSFAGHLAGILVG 202

Homo sapiens (taxid: 9606)
EC: 3EC: .EC: 4EC: .EC: 2EC: 1EC: .EC: -

>sp|O74926|RBD2_SCHPO Rhomboid protein 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rbd2 PE=3 SV=2

 Score = 63.2 bits (152), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 46/148 (31%), Positives = 74/148 (50%), Gaps = 8/148 (5%)

Query: 52  WRIITSAFSHISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGI 111
           + IIT    H+S+LH+VFN  +L  L  + Q        A  L   +   +  G++ L +
Sbjct: 57  YEIITYVTLHLSMLHIVFNFVSL--LPAMSQFEKKQGTLACILVTVIPYTLFPGIMHLIV 114

Query: 112 YHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPFESLI 171
           YH  +++   +Y   V+  G S   F +++   V  P   +  F   S+P    P   LI
Sbjct: 115 YHFFLRK---DY---VSIAGLSGWAFAFISASCVHSPQRLISFFNLFSIPAYCFPIIYLI 168

Query: 172 FTSIIVPQASFLGHLSGIIVGYAIAWGL 199
            T+I+VP+ASF+GH SG ++GY   + L
Sbjct: 169 MTTILVPKASFIGHASGAVMGYCTPFML 196

Probable serine protease.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: -

>sp|Q8BHC7|RHBL4_MOUSE Rhomboid-related protein 4 OS=Mus musculus GN=Rhbdd1 PE=1 SV=1

 Score = 62.4 bits (150), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 49/170 (28%), Positives = 80/170 (47%), Gaps = 8/170 (4%)

Query: 25  IWFYIQKKNIGYSHVGLSYETAVDGHHW-RIITSAFSHISVLHLVFNM-SALWSLGVVEQ 82
           +WF++      Y H  +S E       W R++ S   H    HL FNM S LW    +E+
Sbjct: 39  VWFFLNPWKPLY-HSCISVEKCYQQKDWQRLLLSPLHHGDDWHLYFNMVSMLWKGVKLER 97

Query: 83  LGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTI 142
                LG+ ++        +L+G++ L +   + +      F+R  AVG+S V+F    +
Sbjct: 98  R----LGSRWFAYVIATFSLLTGVVYLLLQFTVAELLNQPDFKRNCAVGFSGVLFALKVL 153

Query: 143 LSVKQPSSKLDLFGFLSLPISFAPFESLIFTSIIVPQASFLGHLSGIIVG 192
            +   P   +++ GF  +P  FA +  L+      P  SF GHL+GI+VG
Sbjct: 154 SNHYCPGGFVNILGF-PVPNRFACWAELVAIHFCTPGTSFAGHLAGILVG 202

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: -

>sp|Q5RBS4|RHBL4_PONAB Rhomboid-related protein 4 OS=Pongo abelii GN=RHBDD1 PE=2 SV=1

 Score = 61.2 bits (147), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 50/170 (29%), Positives = 80/170 (47%), Gaps = 8/170 (4%)

Query: 25  IWFYIQKKNIGYSHVGLSYETAVDGHHW-RIITSAFSHISVLHLVFNM-SALWSLGVVEQ 82
           IWF++  +   YS   LS E       W R++ S   H    HL FN  S LW    +E+
Sbjct: 39  IWFFLNPQKPLYSSC-LSVEKCYQQRDWQRLLLSPLHHADDWHLYFNTASVLWKGINLER 97

Query: 83  LGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTI 142
                LG+ ++        VL+G++ L +   + +      F+R  AVG+S V+F    +
Sbjct: 98  R----LGSRWFAYVITTFSVLTGVVYLLLQFAVAEFMDEPDFKRSCAVGFSGVLFALKVL 153

Query: 143 LSVKQPSSKLDLFGFLSLPISFAPFESLIFTSIIVPQASFLGHLSGIIVG 192
            +   P   +++ GF  +P  FA +  L+   +  P  SF GH +GI+VG
Sbjct: 154 NNHYCPGGFVNILGF-PVPNRFACWVELVAIHLFSPGTSFAGHQAGILVG 202

Pongo abelii (taxid: 9601)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: -

>sp|Q4V8F3|RHBL4_RAT Rhomboid-related protein 4 OS=Rattus norvegicus GN=Rhbdd1 PE=2 SV=1

 Score = 60.5 bits (145), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 49/170 (28%), Positives = 79/170 (46%), Gaps = 8/170 (4%)

Query: 25  IWFYIQKKNIGYSHVGLSYETAVDGHHW-RIITSAFSHISVLHLVFNM-SALWSLGVVEQ 82
           +WF++      Y H  +S E     + W R++ S   H    HL FNM S LW    +E+
Sbjct: 39  VWFFLNPWKPLY-HSCISVEKCYQQNDWQRLLLSPVHHGDDWHLYFNMVSMLWKGVKLEK 97

Query: 83  LGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTI 142
                LG+ ++        +L+G++ L +     +      F+R  AVG+S V+F    +
Sbjct: 98  R----LGSRWFAYIIATFSLLTGVVYLLLQFASAELMNQPDFKRNCAVGFSGVLFALKVL 153

Query: 143 LSVKQPSSKLDLFGFLSLPISFAPFESLIFTSIIVPQASFLGHLSGIIVG 192
            +   P   +++ GF  +P  FA +  L       P  SF GHL+GI+VG
Sbjct: 154 SNHYCPGGFVNILGF-PVPNRFACWAELAAIHFCTPGTSFAGHLAGILVG 202

Rattus norvegicus (taxid: 10116)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: -

>sp|Q6FSG0|RBD2_CANGA Rhomboid protein 2 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=RBD2 PE=3 SV=1

 Score = 58.2 bits (139), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 50/145 (34%), Positives = 80/145 (55%), Gaps = 18/145 (12%)

Query: 61  HISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQRFK 120
           H+S LHLVFN     +L +V  L +    +++   +T V++ LS ++   IY ++ +   
Sbjct: 65  HLSYLHLVFN-----ALAIVGPLNN--FESSHGTIHTGVVLNLSAVIAGIIYCVVSRLLS 117

Query: 121 LEYFRRVTAVGYSCVVFGWMTILSVKQPS--SKLDLFGFL-----SLPISFAPFESLIFT 173
           LE        G S  VF ++T L VK+     +L+L  F+     S+P  F P   L+FT
Sbjct: 118 LE----TGVAGASGWVFTFITYLCVKESQLYPRLELSRFIPGVTQSIPTQFTPVVFLLFT 173

Query: 174 SIIVPQASFLGHLSGIIVGYAIAWG 198
           +I+  Q+SFLGH +G+IVGY + +G
Sbjct: 174 AIVFFQSSFLGHTAGMIVGYIMGYG 198

Probable serine protease.

Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) (taxid: 284593)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: -

>sp|Q8RXW0|Y3761_ARATH Uncharacterized protein At3g17611 OS=Arabidopsis thaliana GN=At3g17611 PE=2 SV=1

 Score = 57.8 bits (138), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 44/141 (31%), Positives = 73/141 (51%), Gaps = 6/141 (4%)

Query: 53  RIITSAFSHISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIY 112
           R+  SAF H++  HLV+NM +L   G+  +     +G++ +      L+ +S  + L + 
Sbjct: 78  RLFLSAFYHVNEPHLVYNMMSLLWKGIKLE---TSMGSSEFASMVFTLIGMSQGVTLLLA 134

Query: 113 HLLIQRFKLEY-FRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPFESLI 171
             L+  F  +  +    AVG+S V+F    +L+  Q      ++G L +P  +A +  LI
Sbjct: 135 KSLLLLFDYDRAYYNEYAVGFSGVLFAMKVVLN-SQAEDYSSVYGIL-VPTKYAAWAELI 192

Query: 172 FTSIIVPQASFLGHLSGIIVG 192
              + VP ASFLGHL GI+ G
Sbjct: 193 LVQMFVPNASFLGHLGGILAG 213

Arabidopsis thaliana (taxid: 3702)

>sp|Q8LB17|Y3846_ARATH Uncharacterized protein At3g58460 OS=Arabidopsis thaliana GN=At3g58460 PE=1 SV=2

 Score = 57.0 bits (136), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 58/251 (23%), Positives = 109/251 (43%), Gaps = 47/251 (18%)

Query: 52  WRIITSAFSHISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGI 111
           +R  T+   H S+LH++FNM AL  +G   +L  + +G+   L  T++L   + +L    
Sbjct: 65  YRFYTAIIFHGSLLHVLFNMMALVPMG--SELERI-MGSVRLLYLTVLLATTNAVL---- 117

Query: 112 YHLLIQR-------FKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISF 164
            HLLI         ++ ++     A+G+S ++F  + I +     +   +FG  ++P   
Sbjct: 118 -HLLIASLAGYNPFYQYDHLMNECAIGFSGILFSMIVIETSLSGVTSRSVFGLFNVPAKL 176

Query: 165 APFESLIFTSIIVPQASFLGHLSGIIVGYAIAWGLIH----GMNNYWALSMLGWI----- 215
            P+  LI   +++   S LGHL GI+ G++ ++GL +    G + +  +    W+     
Sbjct: 177 YPWILLIVFQLLMTNVSLLGHLCGILSGFSYSYGLFNFLMPGSSFFTTIESASWMSSFIR 236

Query: 216 -------------VLVFVYSLKRSGTYDF----------NFLEIESVTDPSLPSVRFIGN 252
                          +  YS + + +  F          ++L     ++ S    RF G 
Sbjct: 237 RPKFIMCTGGNPSSYIPTYSAQNTTSSGFSTGNAWRSLSSWLPQREASNQSSEDSRFPGR 296

Query: 253 GRTLQMSAIPV 263
           GRTL  +  P 
Sbjct: 297 GRTLSTARDPT 307

Arabidopsis thaliana (taxid: 3702)

>sp|Q12270|RBD2_YEAST Rhomboid protein 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RBD2 PE=1 SV=1

 Score = 48.5 bits (114), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 47/168 (27%), Positives = 81/168 (48%), Gaps = 20/168 (11%)

Query: 61  HISVLHLVFNMSALWS-LGVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQRF 119
           H+S+ HL+FN+ A+W+ L + E+      GT Y    T V + LS L   GI + L+ + 
Sbjct: 63  HLSLPHLLFNVLAIWAPLNLFEETH----GTVY----TGVFLNLSALFA-GILYCLLGKL 113

Query: 120 KLEYFRRVTAVGYSCVVFGWMTILSVK-QPSSKLDLFGFLSLPISFAPFESLIFTSIIVP 178
                    A G+   +F + +    + +P +++    + S+P  + P   L+  ++++P
Sbjct: 114 LYPEALVAGASGWCFTLFAYYSFKESQIRPRTRIFRTDY-SIPTLYTPLVLLVAIAVVIP 172

Query: 179 QASFLGHLSGIIVGYAIAWGLIHGMNNYW--ALSMLGWIVLVFVYSLK 224
            +SF GH  G+ VGYAI      G    W   ++  GWI+     SL 
Sbjct: 173 GSSFWGHFFGLCVGYAI------GYKESWFNKITPPGWIITKIEKSLD 214

Probable serine protease.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: -

>sp|Q6BSA9|RBD2_DEBHA Rhomboid protein 2 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=RBD2 PE=3 SV=2

 Score = 46.2 bits (108), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/148 (29%), Positives = 71/148 (47%), Gaps = 19/148 (12%)

Query: 61  HISVLHLVFNMSALWS-LGVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQRF 119
           H    H + N+  L+S L + E+      GT +      VL V +GL    +  LL    
Sbjct: 72  HRGFTHWLLNVVGLFSPLAIFERTN----GTVFTGVTLNVLAVTAGLQFCIVGKLL---- 123

Query: 120 KLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGF------LSLPISFAPFESLIFT 173
               +     +G S VVF +M+ ++ K+  +   ++ F      +S+P  ++PF  LI  
Sbjct: 124 ----YPNTQVIGLSGVVFSFMSFMAYKEHHTTPVIYTFKYQGSEVSIPTLYSPFIFLIVC 179

Query: 174 SIIVPQASFLGHLSGIIVGYAIAWGLIH 201
            +++P +SF GHL+GI  GY +A G I 
Sbjct: 180 MVLIPGSSFWGHLAGISSGYLLALGYIK 207

Probable serine protease.

Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) (taxid: 284592)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	269
224095662	269	predicted protein [Populus trichocarpa]	1.0	1.0	0.899	1e-138
449454580	271	PREDICTED: rhomboid protein 2-like [Cucu	1.0	0.992	0.874	1e-134
307136259	271	rhomboid protein [Cucumis melo subsp. me	1.0	0.992	0.870	1e-134
225433926	271	PREDICTED: uncharacterized protein LOC10	1.0	0.992	0.874	1e-134
297817250	269	rhomboid family protein [Arabidopsis lyr	1.0	1.0	0.858	1e-132
388521227	271	unknown [Lotus japonicus]	1.0	0.992	0.863	1e-132
15231701	269	RHOMBOID-like protein 13 [Arabidopsis th	1.0	1.0	0.855	1e-132
255577227	269	Rhomboid protein, putative [Ricinus comm	1.0	1.0	0.892	1e-131
356545465	271	PREDICTED: rhomboid protein 2-like [Glyc	1.0	0.992	0.892	1e-129
356538887	271	PREDICTED: rhomboid protein 2-like [Glyc	1.0	0.992	0.885	1e-128

>gi|224095662|ref|XP_002310428.1| predicted protein [Populus trichocarpa] gi|222853331|gb|EEE90878.1| predicted protein [Populus trichocarpa]

 Score =  496 bits (1277), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 242/269 (89%), Positives = 258/269 (95%)

Query: 1   MGRPLFYEIMEKPATSCIIGICSVIWFYIQKKNIGYSHVGLSYETAVDGHHWRIITSAFS 60
           MGRPLFYEI+EKPATSCIIGICS IWFYIQK+N GYSHVGLSYE A++GHHWRIITSAFS
Sbjct: 1   MGRPLFYEIVEKPATSCIIGICSAIWFYIQKRNFGYSHVGLSYENAIEGHHWRIITSAFS 60

Query: 61  HISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQRFK 120
           HISV+HLVFNMSALWSLGVVEQLG +GLG AYYL +TLVLVVLSG LVLG+YHLLIQRFK
Sbjct: 61  HISVIHLVFNMSALWSLGVVEQLGHIGLGVAYYLHHTLVLVVLSGALVLGMYHLLIQRFK 120

Query: 121 LEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPFESLIFTSIIVPQA 180
           +EYFR VTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPFESLIFTSIIVPQA
Sbjct: 121 IEYFRSVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPFESLIFTSIIVPQA 180

Query: 181 SFLGHLSGIIVGYAIAWGLIHGMNNYWALSMLGWIVLVFVYSLKRSGTYDFNFLEIESVT 240
           SFLGHLSGI+VGYAIAWGLIHGMNNYWA+SMLGWIVLVFV SLKRSG YDF+FLEIESVT
Sbjct: 181 SFLGHLSGIVVGYAIAWGLIHGMNNYWAISMLGWIVLVFVVSLKRSGAYDFDFLEIESVT 240

Query: 241 DPSLPSVRFIGNGRTLQMSAIPVEGVEIV 269
           DPSLPSVRF+G+GRTLQ S++PVEGVEIV
Sbjct: 241 DPSLPSVRFLGSGRTLQESSLPVEGVEIV 269

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449454580|ref|XP_004145032.1| PREDICTED: rhomboid protein 2-like [Cucumis sativus] gi|449471895|ref|XP_004153438.1| PREDICTED: rhomboid protein 2-like [Cucumis sativus] gi|449520980|ref|XP_004167510.1| PREDICTED: LOW QUALITY PROTEIN: rhomboid protein 2-like [Cucumis sativus]

 Score =  484 bits (1247), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 237/271 (87%), Positives = 257/271 (94%), Gaps = 2/271 (0%)

Query: 1   MGRPLFYEIMEKPATSCIIGICSVIWFYIQKKNIGYSHVGLSYETAVDGHHWRIITSAFS 60
           MGRPLFYEI+EKPATS IIGIC  IWFYIQKKNIGYSHVGLSYETAV+GHHWRIITSAFS
Sbjct: 1   MGRPLFYEILEKPATSGIIGICCAIWFYIQKKNIGYSHVGLSYETAVEGHHWRIITSAFS 60

Query: 61  HISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQRFK 120
           HISV+HLVFNMSALWSLG VEQLG +GLG  YYL YTLVLV+LSG+LVLG+YHLLIQ+FK
Sbjct: 61  HISVIHLVFNMSALWSLGAVEQLGHIGLGVPYYLHYTLVLVILSGVLVLGMYHLLIQKFK 120

Query: 121 LEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPFESLIFTSIIVPQA 180
           LEYFRRVTAVGYSCVVFGWMTILSV+QPSSKLDLFGFLSLPISFAPFESLIFTSIIVPQA
Sbjct: 121 LEYFRRVTAVGYSCVVFGWMTILSVRQPSSKLDLFGFLSLPISFAPFESLIFTSIIVPQA 180

Query: 181 SFLGHLSGIIVGYAIAWGLIHGMNNYWALSMLGWIVLVFVYSLKRSGTYDFNFLEIESVT 240
           SFLGHLSGIIVGYAIAWGLIHGMNN+WA+SMLGW+VLVF++SLK+S TY+F+FLEIESVT
Sbjct: 181 SFLGHLSGIIVGYAIAWGLIHGMNNFWAISMLGWVVLVFIFSLKKSNTYNFDFLEIESVT 240

Query: 241 DPSLPSVRFI--GNGRTLQMSAIPVEGVEIV 269
           DPSLPSVRF+  GNGRTLQM+A+P   VEIV
Sbjct: 241 DPSLPSVRFLSSGNGRTLQMNALPTGDVEIV 271

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|307136259|gb|ADN34087.1| rhomboid protein [Cucumis melo subsp. melo]

 Score =  483 bits (1244), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 236/271 (87%), Positives = 257/271 (94%), Gaps = 2/271 (0%)

Query: 1   MGRPLFYEIMEKPATSCIIGICSVIWFYIQKKNIGYSHVGLSYETAVDGHHWRIITSAFS 60
           MGRPLFYEI+EKPATS IIGIC  IWFYIQKKNIGYSHVGLSYETA++GHHWRIITSAFS
Sbjct: 1   MGRPLFYEILEKPATSGIIGICCAIWFYIQKKNIGYSHVGLSYETAMEGHHWRIITSAFS 60

Query: 61  HISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQRFK 120
           HISV+HLVFNMSALWSLG VEQLG +GLG  YYL YTLVLV+LSG+LVLG+YHLLIQ+FK
Sbjct: 61  HISVIHLVFNMSALWSLGAVEQLGHIGLGVPYYLHYTLVLVILSGVLVLGMYHLLIQKFK 120

Query: 121 LEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPFESLIFTSIIVPQA 180
           LEYFRRVTAVGYSCVVFGWMTILSV+QPSSKLDLFGFLSLPISFAPFESLIFTSIIVPQA
Sbjct: 121 LEYFRRVTAVGYSCVVFGWMTILSVRQPSSKLDLFGFLSLPISFAPFESLIFTSIIVPQA 180

Query: 181 SFLGHLSGIIVGYAIAWGLIHGMNNYWALSMLGWIVLVFVYSLKRSGTYDFNFLEIESVT 240
           SFLGHLSGIIVGYAIAWGLIHGMNN+WA+SMLGW+VLVF++SLK+S TY+F+FLEIESVT
Sbjct: 181 SFLGHLSGIIVGYAIAWGLIHGMNNFWAISMLGWVVLVFIFSLKKSNTYNFDFLEIESVT 240

Query: 241 DPSLPSVRFI--GNGRTLQMSAIPVEGVEIV 269
           DPSLPSVRF+  GNGRTLQM+A+P   VEIV
Sbjct: 241 DPSLPSVRFLSSGNGRTLQMNALPTGDVEIV 271

Source: Cucumis melo subsp. melo

Species: Cucumis melo

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225433926|ref|XP_002268743.1| PREDICTED: uncharacterized protein LOC100252469 [Vitis vinifera] gi|147779771|emb|CAN67998.1| hypothetical protein VITISV_001298 [Vitis vinifera] gi|297743810|emb|CBI36693.3| unnamed protein product [Vitis vinifera]

 Score =  483 bits (1242), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 237/271 (87%), Positives = 256/271 (94%), Gaps = 2/271 (0%)

Query: 1   MGRPLFYEIMEKPATSCIIGICSVIWFYIQKKNIGYSHVGLSYETAVDGHHWRIITSAFS 60
           MG+PLFYEI+EKPATSCIIG+C  IWFYIQKKNIGYSHVGLSYETA++GHHWRIITSA S
Sbjct: 1   MGKPLFYEILEKPATSCIIGLCCAIWFYIQKKNIGYSHVGLSYETAIEGHHWRIITSALS 60

Query: 61  HISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQRFK 120
           HISV+HLVFNMSALWSLGVVEQLG +G+G  +YLQYTLVLVVLSG LVLG YH+LIQRFK
Sbjct: 61  HISVIHLVFNMSALWSLGVVEQLGHMGMGVEFYLQYTLVLVVLSGGLVLGSYHVLIQRFK 120

Query: 121 LEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPFESLIFTSIIVPQA 180
           LEYFRRVTAVGYSCVVFGWMTILSVKQPSSKL+LFGFLSLPISFAPFESLIFTSIIVPQA
Sbjct: 121 LEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLELFGFLSLPISFAPFESLIFTSIIVPQA 180

Query: 181 SFLGHLSGIIVGYAIAWGLIHGMNNYWALSMLGWIVLVFVYSLKRSGTYDFNFLEIESVT 240
           SFLGHLSGIIVGYAIAWG+IHGM NYWA+SMLGWIVLVFV+SLKRSG YDF+FLEIE VT
Sbjct: 181 SFLGHLSGIIVGYAIAWGVIHGMTNYWAVSMLGWIVLVFVFSLKRSGAYDFSFLEIEPVT 240

Query: 241 DPSLPSVRFI--GNGRTLQMSAIPVEGVEIV 269
           DPSLPSVRF+  GNGRTLQMSA+PV G ++V
Sbjct: 241 DPSLPSVRFLASGNGRTLQMSALPVGGSDLV 271

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297817250|ref|XP_002876508.1| rhomboid family protein [Arabidopsis lyrata subsp. lyrata] gi|297322346|gb|EFH52767.1| rhomboid family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  477 bits (1227), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 231/269 (85%), Positives = 255/269 (94%)

Query: 1   MGRPLFYEIMEKPATSCIIGICSVIWFYIQKKNIGYSHVGLSYETAVDGHHWRIITSAFS 60
           MGRPLFY+I+EKPATSCI+ ICSVIWF IQKK+IGYS VGLSYETA++GH+WR+ITSA S
Sbjct: 1   MGRPLFYDIIEKPATSCIVTICSVIWFVIQKKSIGYSQVGLSYETAIEGHYWRMITSALS 60

Query: 61  HISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQRFK 120
           HISVLHLVFNMSALWSLGVVEQLG VGLGTAYYL YTLVLVV SG+LV+GIYHLLI RFK
Sbjct: 61  HISVLHLVFNMSALWSLGVVEQLGHVGLGTAYYLHYTLVLVVFSGVLVIGIYHLLIARFK 120

Query: 121 LEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPFESLIFTSIIVPQA 180
           ++YFRRVTAVGYSCVVFGWMTILS+KQPSSKLDLFG LSLPISFAPFESLIFTSIIVPQA
Sbjct: 121 IDYFRRVTAVGYSCVVFGWMTILSMKQPSSKLDLFGLLSLPISFAPFESLIFTSIIVPQA 180

Query: 181 SFLGHLSGIIVGYAIAWGLIHGMNNYWALSMLGWIVLVFVYSLKRSGTYDFNFLEIESVT 240
           SFLGHLSGI+VGYAI+WGLI GMNNYWAL+MLGWIV+VFV+SLK+SG YDF+FLEIES+T
Sbjct: 181 SFLGHLSGILVGYAISWGLIGGMNNYWALTMLGWIVVVFVFSLKKSGAYDFSFLEIESLT 240

Query: 241 DPSLPSVRFIGNGRTLQMSAIPVEGVEIV 269
           D SLPSVRFIGNGRTLQ SA+P+ GVE+V
Sbjct: 241 DASLPSVRFIGNGRTLQASAVPLSGVEVV 269

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388521227|gb|AFK48675.1| unknown [Lotus japonicus]

 Score =  476 bits (1226), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 234/271 (86%), Positives = 254/271 (93%), Gaps = 2/271 (0%)

Query: 1   MGRPLFYEIMEKPATSCIIGICSVIWFYIQKKNIGYSHVGLSYETAVDGHHWRIITSAFS 60
           MG+PLFYEI+EKPATS +IGICSVIWFYIQKKNIGYSHVGLSYETA++G HWRIITSAFS
Sbjct: 1   MGKPLFYEILEKPATSVLIGICSVIWFYIQKKNIGYSHVGLSYETAIEGQHWRIITSAFS 60

Query: 61  HISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQRFK 120
           HISV+HLVFNMSALWSLGVVEQL  +GLG  YYLQYTLVLV+LSG+LVL +YHLLIQRFK
Sbjct: 61  HISVIHLVFNMSALWSLGVVEQLDHLGLGVEYYLQYTLVLVILSGVLVLAMYHLLIQRFK 120

Query: 121 LEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPFESLIFTSIIVPQA 180
           +EYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPFESLIFTSIIVPQA
Sbjct: 121 IEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPFESLIFTSIIVPQA 180

Query: 181 SFLGHLSGIIVGYAIAWGLIHGMNNYWALSMLGWIVLVFVYSLKRSGTYDFNFLEIESVT 240
           SFLGHLSGI+VGY IAWGLIHGM+NYWALS+LGWIVLVFV SLKRSG  + NFLEIESVT
Sbjct: 181 SFLGHLSGIVVGYTIAWGLIHGMSNYWALSLLGWIVLVFVLSLKRSGVLELNFLEIESVT 240

Query: 241 DPSLPSVRFI--GNGRTLQMSAIPVEGVEIV 269
           DPSLPSVRF+  GNGRTLQMSA+P   +++V
Sbjct: 241 DPSLPSVRFLASGNGRTLQMSALPDGNIDLV 271

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15231701|ref|NP_191511.1| RHOMBOID-like protein 13 [Arabidopsis thaliana] gi|6996288|emb|CAB75449.1| putative protein [Arabidopsis thaliana] gi|332646414|gb|AEE79935.1| RHOMBOID-like protein 13 [Arabidopsis thaliana]

 Score =  475 bits (1222), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 230/269 (85%), Positives = 255/269 (94%)

Query: 1   MGRPLFYEIMEKPATSCIIGICSVIWFYIQKKNIGYSHVGLSYETAVDGHHWRIITSAFS 60
           MGRPLFY+I+EKPATSCI+ +CSVIWF IQKK+IGYS VGLSYETA++GH+WR+ITSA S
Sbjct: 1   MGRPLFYDIIEKPATSCIVTLCSVIWFVIQKKSIGYSQVGLSYETAIEGHYWRMITSALS 60

Query: 61  HISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQRFK 120
           HISVLHLVFNMSALWSLGVVEQLG VGLGTAYYL YTLVLVV SG+LV+GIYHLLI RFK
Sbjct: 61  HISVLHLVFNMSALWSLGVVEQLGHVGLGTAYYLHYTLVLVVFSGVLVIGIYHLLIARFK 120

Query: 121 LEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPFESLIFTSIIVPQA 180
           ++YFRRVTAVGYSCVVFGWMTILSVKQPSSKL+LFG LSLPISFAPFESLIFTSIIVPQA
Sbjct: 121 IDYFRRVTAVGYSCVVFGWMTILSVKQPSSKLNLFGLLSLPISFAPFESLIFTSIIVPQA 180

Query: 181 SFLGHLSGIIVGYAIAWGLIHGMNNYWALSMLGWIVLVFVYSLKRSGTYDFNFLEIESVT 240
           SFLGHLSGI+VGYAI+WGLI GMNNYWAL+MLGWIV+VFV+SLK+SG YDF+FLEIES+T
Sbjct: 181 SFLGHLSGILVGYAISWGLIGGMNNYWALTMLGWIVVVFVFSLKKSGAYDFSFLEIESLT 240

Query: 241 DPSLPSVRFIGNGRTLQMSAIPVEGVEIV 269
           D SLPSVRFIGNGRTLQ SA+P+ GVE+V
Sbjct: 241 DASLPSVRFIGNGRTLQASAVPLSGVEVV 269

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255577227|ref|XP_002529496.1| Rhomboid protein, putative [Ricinus communis] gi|223531054|gb|EEF32906.1| Rhomboid protein, putative [Ricinus communis]

 Score =  474 bits (1220), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 240/269 (89%), Positives = 262/269 (97%)

Query: 1   MGRPLFYEIMEKPATSCIIGICSVIWFYIQKKNIGYSHVGLSYETAVDGHHWRIITSAFS 60
           MG+PLFYEI+EKPATSCIIGICS IWFYIQKKNIGYSHVGLSYETA++GHHWRIITSAFS
Sbjct: 1   MGKPLFYEILEKPATSCIIGICSAIWFYIQKKNIGYSHVGLSYETAIEGHHWRIITSAFS 60

Query: 61  HISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQRFK 120
           HISVLHLVFNMSALWSLGVVEQLG +GLG AYYL YTLVLVVLSG+LVLG+Y +LIQRFK
Sbjct: 61  HISVLHLVFNMSALWSLGVVEQLGHMGLGIAYYLHYTLVLVVLSGVLVLGMYRILIQRFK 120

Query: 121 LEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPFESLIFTSIIVPQA 180
           ++YFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPFESLIFTSIIVPQA
Sbjct: 121 VDYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPFESLIFTSIIVPQA 180

Query: 181 SFLGHLSGIIVGYAIAWGLIHGMNNYWALSMLGWIVLVFVYSLKRSGTYDFNFLEIESVT 240
           SFLGHLSGIIVGY+IAWGLIHGMNN+WA+SMLGWIV++F++SLKRSG YDF+FLEIESVT
Sbjct: 181 SFLGHLSGIIVGYSIAWGLIHGMNNFWAISMLGWIVVIFMFSLKRSGAYDFSFLEIESVT 240

Query: 241 DPSLPSVRFIGNGRTLQMSAIPVEGVEIV 269
           D SLPSVRF+GNGRTLQMSA+P+EGVE+V
Sbjct: 241 DASLPSVRFLGNGRTLQMSALPLEGVEVV 269

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356545465|ref|XP_003541163.1| PREDICTED: rhomboid protein 2-like [Glycine max]

 Score =  467 bits (1202), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 242/271 (89%), Positives = 256/271 (94%), Gaps = 2/271 (0%)

Query: 1   MGRPLFYEIMEKPATSCIIGICSVIWFYIQKKNIGYSHVGLSYETAVDGHHWRIITSAFS 60
           MG+PLFYEI+EKPATSCIIGICS+IWFYIQKKNIGYSHVGLSYETAV+GHHWRIITSAFS
Sbjct: 1   MGKPLFYEILEKPATSCIIGICSMIWFYIQKKNIGYSHVGLSYETAVEGHHWRIITSAFS 60

Query: 61  HISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQRFK 120
           HISV+HLVFNMSALWSLGVVEQLG +GLG  YYLQYTLVLVVLSG+LVL +YHLLIQRFK
Sbjct: 61  HISVIHLVFNMSALWSLGVVEQLGHLGLGVEYYLQYTLVLVVLSGVLVLAMYHLLIQRFK 120

Query: 121 LEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPFESLIFTSIIVPQA 180
           LEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPFESLIFTSIIVPQA
Sbjct: 121 LEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPFESLIFTSIIVPQA 180

Query: 181 SFLGHLSGIIVGYAIAWGLIHGMNNYWALSMLGWIVLVFVYSLKRSGTYDFNFLEIESVT 240
           SFLGHLSGI+VGYAIAWGLIHGM+NYWALS+LGWI LVFV SLKRSG  D NFLEIESVT
Sbjct: 181 SFLGHLSGIVVGYAIAWGLIHGMSNYWALSLLGWIALVFVLSLKRSGAVDLNFLEIESVT 240

Query: 241 DPSLPSVRFIG--NGRTLQMSAIPVEGVEIV 269
           DPSLPSVRF+   +GRTLQMSA+P   VEIV
Sbjct: 241 DPSLPSVRFLASNSGRTLQMSALPNGNVEIV 271

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356538887|ref|XP_003537932.1| PREDICTED: rhomboid protein 2-like [Glycine max]

 Score =  464 bits (1195), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 240/271 (88%), Positives = 256/271 (94%), Gaps = 2/271 (0%)

Query: 1   MGRPLFYEIMEKPATSCIIGICSVIWFYIQKKNIGYSHVGLSYETAVDGHHWRIITSAFS 60
           MG+PLFYEI+EKPATSCIIGICS+IWFYIQKKNIGYSHVGLSYETA++GHHWRIITSAFS
Sbjct: 1   MGKPLFYEILEKPATSCIIGICSMIWFYIQKKNIGYSHVGLSYETALEGHHWRIITSAFS 60

Query: 61  HISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQRFK 120
           HISV+HLVFNMSALWSLGVVEQLG +GLG  YYLQYTLVLVVLSG+LVL +YHLLI+RFK
Sbjct: 61  HISVIHLVFNMSALWSLGVVEQLGHLGLGVEYYLQYTLVLVVLSGVLVLAMYHLLIERFK 120

Query: 121 LEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPFESLIFTSIIVPQA 180
           LEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPFESLIFTSIIVPQA
Sbjct: 121 LEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPFESLIFTSIIVPQA 180

Query: 181 SFLGHLSGIIVGYAIAWGLIHGMNNYWALSMLGWIVLVFVYSLKRSGTYDFNFLEIESVT 240
           SFLGHLSGI+VGYAIAWGLIHGM+NYWALS+LGWI LVFV SLKRSG  D NFLEIESVT
Sbjct: 181 SFLGHLSGIVVGYAIAWGLIHGMSNYWALSLLGWIALVFVLSLKRSGAVDLNFLEIESVT 240

Query: 241 DPSLPSVRFIG--NGRTLQMSAIPVEGVEIV 269
           DPSLPSVRF+   +GRTLQMSA+P   VEIV
Sbjct: 241 DPSLPSVRFLASNSGRTLQMSALPNGNVEIV 271

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	269
TAIR|locus:2097473	269	RBL13 "RHOMBOID-like protein 1	1.0	1.0	0.817	9.8e-119
DICTYBASE|DDB_G0271574	218	DDB_G0271574 [Dictyostelium di	0.635	0.784	0.274	1.9e-12
POMBASE|SPCC790.03	251	SPCC790.03 "rhomboid family pr	0.684	0.733	0.283	6.3e-11
DICTYBASE|DDB_G0281359	343	DDB_G0281359 [Dictyostelium di	0.643	0.504	0.293	8e-11
UNIPROTKB|Q8TEB9	315	RHBDD1 "Rhomboid-related prote	0.620	0.530	0.299	3.9e-10
TAIR|locus:1005716534	334	RBL14 "RHOMBOID-like protein 1	0.494	0.398	0.321	4.7e-10
UNIPROTKB|E2R6X6	316	RHBDD1 "Uncharacterized protei	0.620	0.528	0.299	7e-09
UNIPROTKB|E2RD89	316	RHBDD1 "Uncharacterized protei	0.620	0.528	0.299	7e-09
UNIPROTKB|Q5RBS4	318	RHBDD1 "Rhomboid-related prote	0.620	0.525	0.288	7.2e-09
MGI|MGI:1924117	315	Rhbdd1 "rhomboid domain contai	0.624	0.533	0.278	9.1e-09

TAIR|locus:2097473 RBL13 "RHOMBOID-like protein 13" [Arabidopsis thaliana (taxid:3702)]

 Score = 1169 (416.6 bits), Expect = 9.8e-119, P = 9.8e-119
 Identities = 220/269 (81%), Positives = 243/269 (90%)

Query:     1 MGRPLFYEIMEKPATSCIIGICSVIWFYIQKKNIGYSHVGLSYETAVDGHHWRIITSAFS 60
             MGRPLFY+I+EKPATSCI+ +CSVIWF IQKK+IGYS VGLSYETA++GH+WR+ITSA S
Sbjct:     1 MGRPLFYDIIEKPATSCIVTLCSVIWFVIQKKSIGYSQVGLSYETAIEGHYWRMITSALS 60

Query:    61 HISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQYTXXXXXXXXXXXXXIYHLLIQRFK 120
             HISVLHLVFNMSALWSLGVVEQLG VGLGTAYYL YT             IYHLLI RFK
Sbjct:    61 HISVLHLVFNMSALWSLGVVEQLGHVGLGTAYYLHYTLVLVVFSGVLVIGIYHLLIARFK 120

Query:   121 LEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPFESLIFTSIIVPQA 180
             ++YFRRVTAVGYSCVVFGWMTILSVKQPSSKL+LFG LSLPISFAPFESLIFTSIIVPQA
Sbjct:   121 IDYFRRVTAVGYSCVVFGWMTILSVKQPSSKLNLFGLLSLPISFAPFESLIFTSIIVPQA 180

Query:   181 SFLGHLSGIIVGYAIAWGLIHGMNNYWALSMLGWIVLVFVYSLKRSGTYDFNFLEIESVT 240
             SFLGHLSGI+VGYAI+WGLI GMNNYWAL+MLGWIV+VFV+SLK+SG YDF+FLEIES+T
Sbjct:   181 SFLGHLSGILVGYAISWGLIGGMNNYWALTMLGWIVVVFVFSLKKSGAYDFSFLEIESLT 240

Query:   241 DPSLPSVRFIGNGRTLQMSAIPVEGVEIV 269
             D SLPSVRFIGNGRTLQ SA+P+ GVE+V
Sbjct:   241 DASLPSVRFIGNGRTLQASAVPLSGVEVV 269

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

DICTYBASE|DDB_G0271574 DDB_G0271574 [Dictyostelium discoideum (taxid:44689)]

 Score = 166 (63.5 bits), Expect = 1.9e-12, P = 1.9e-12
 Identities = 51/186 (27%), Positives = 84/186 (45%)

Query:     1 MGRPLFYEIMEKPATSCIIGICSVIWFYIQKKNIGYSHVGLSYETAVDGHHWRIITSAFS 60
             +    F EI + P TS I+ I  +IWF     +I    V  +Y+  + G +WR+I+S FS
Sbjct:     6 LNNEFFIEIKQCPITSIILIINVLIWFNHFAYDISTEKVSFNYKEIIGGQYWRVISSTFS 65

Query:    61 HISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQYTXXXXXXXX-XXXXXIYHLLIQRF 119
             H +++HL+ N  ++W+   +E +     G+ YY +Y               IY  LI   
Sbjct:    66 HSNIIHLILNSISIWNTSKIEIIK----GSYYYFKYNHYIGYSCVCFGLLVIYIKLITNS 121

Query:   120 KLEYFRRVTAVGYSCVVFGWMTILS-----VKQPSSKLDLFGFLSLPI---SFAPFESLI 171
              + Y+  +  + YSC +    +I+      +      +DLF    LPI   SF     +I
Sbjct:   122 IISYYPFLCLI-YSCFMIKNASIIGHFNGIIIGALINIDLFEKY-LPINKNSFYVITLII 179

Query:   172 FTSIIV 177
             F   I+
Sbjct:   180 FICFII 185

GO:0016021 "integral to membrane" evidence=IEA

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

POMBASE|SPCC790.03 SPCC790.03 "rhomboid family protease" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 165 (63.1 bits), Expect = 6.3e-11, P = 6.3e-11
 Identities = 55/194 (28%), Positives = 90/194 (46%)

Query:     1 MGRPLFYEIMEKPATSCIIGICSVIWFYIQKKNIGYSHVGLSYETAVDGHH-WRIITSAF 59
             +GR   + I++ P  + II   +++ + +    I    + LS+   +     + IIT   
Sbjct:     6 LGRSKEF-ILKLPIWTQIITYIAILVYALSFFGISTGVLSLSWIGLLQKRQLYEIITYVT 64

Query:    60 SHISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQYTXXXXXXXXXXXXXIYHLLIQRF 119
              H+S+LH+VFN  +L  L  + Q  +   GT   +  T             I HL++  F
Sbjct:    65 LHLSMLHIVFNFVSL--LPAMSQF-EKKQGTLACILVTVIPYTLFPG----IMHLIVYHF 117

Query:   120 KLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPFESLIFTSIIVPQ 179
              L     V+  G S   F +++   V  P   +  F   S+P    P   LI T+I+VP+
Sbjct:   118 FLRK-DYVSIAGLSGWAFAFISASCVHSPQRLISFFNLFSIPAYCFPIIYLIMTTILVPK 176

Query:   180 ASFLGHLSGIIVGY 193
             ASF+GH SG ++GY
Sbjct:   177 ASFIGHASGAVMGY 190

GO:0000139 "Golgi membrane" evidence=IEA

GO:0004252 "serine-type endopeptidase activity" evidence=ISM

GO:0005794 "Golgi apparatus" evidence=ISO;IDA

GO:0006508 "proteolysis" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0030137 "COPI-coated vesicle" evidence=ISO

DICTYBASE|DDB_G0281359 DDB_G0281359 [Dictyostelium discoideum (taxid:44689)]

 Score = 169 (64.5 bits), Expect = 8.0e-11, P = 8.0e-11
 Identities = 57/194 (29%), Positives = 89/194 (45%)

Query:    14 ATSCIIGICSVIWFY--IQKKNIGYSHVGLSYETAVDG---HHWRIITSAFSHISVLHLV 68
             AT  I  ICS+++    +     G     LS E+  +    + +RII S F+H+S+ H+V
Sbjct:    39 ATKVISIICSILFALSLVAPSMFGSYKTCLSIESLTNSFLDNLYRIILSNFAHLSIYHIV 98

Query:    69 FNMSALWSLGVVEQLGDVGLGTAYYLQYTXXXXXXXXXXXXXIYHLLIQRFKLEYFRRVT 128
             +NM     L  +E+L     GT  Y                 IY   I R        V 
Sbjct:    99 YNMITFLDLAKLERLT---FGTLKYFYLLFLFGIITNLICLFIY--FIGR------NNVC 147

Query:   129 AVGYSCVVFGWMTILSVKQPSSKLDLFGF--LSLPISFAPFESLIFTSIIVPQASFLGHL 186
              +G+S V+F    ++ ++  SS  D+F F  + +P    P+  LI   + VP++SF+GH 
Sbjct:   148 HLGFSGVLFA---LIYIESNSSGRDVFLFNAVKIPSKLYPWAMLILAHVFVPRSSFIGHF 204

Query:   187 SGIIVGYAIAWGLI 200
             SGI+VG     G +
Sbjct:   205 SGIVVGILFIKGYL 218

GO:0016021 "integral to membrane" evidence=IEA

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

UNIPROTKB|Q8TEB9 RHBDD1 "Rhomboid-related protein 4" [Homo sapiens (taxid:9606)]

 Score = 163 (62.4 bits), Expect = 3.9e-10, P = 3.9e-10
 Identities = 53/177 (29%), Positives = 79/177 (44%)

Query:    25 IWFYIQKKNIGYSHVGLSYETAVDGHHW-RIITSAFSHISVLHLVFNM-SALWSLGVVEQ 82
             IWF++  +   YS   LS E       W R++ S   H    HL FNM S LW  G+   
Sbjct:    39 IWFFLNPQKPLYSSC-LSVEKCYQQKDWQRLLLSPLHHADDWHLYFNMASMLWK-GI--N 94

Query:    83 LGDVGLGTAYYLQYTXXXXXXXXXXXXXIYHLLIQRFKLEY-FRRVTAVGYSCVVFGWMT 141
             L +  LG+ ++  Y              +    +  F  E  F+R  AVG+S V+F    
Sbjct:    95 L-ERRLGSRWFA-YVITAFSVLTGVVYLLLQFAVAEFMDEPDFKRSCAVGFSGVLFALKV 152

Query:   142 ILSVKQPSSKLDLFGFLSLPISFAPFESLIFTSIIVPQASFLGHLSGIIVGYAIAWG 198
             + +   P   +++ GF  +P  FA +  L+   +  P  SF GHL+GI+VG     G
Sbjct:   153 LNNHYCPGGFVNILGF-PVPNRFACWVELVAIHLFSPGTSFAGHLAGILVGLMYTQG 208

GO:0004252 "serine-type endopeptidase activity" evidence=IEA;IDA

GO:0006915 "apoptotic process" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0034644 "cellular response to UV" evidence=ISS

GO:0043066 "negative regulation of apoptotic process" evidence=ISS;IMP;IDA

GO:0048515 "spermatid differentiation" evidence=ISS

GO:2000254 "regulation of male germ cell proliferation" evidence=ISS

GO:0045732 "positive regulation of protein catabolic process" evidence=IMP;IDA

GO:0033619 "membrane protein proteolysis" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0004175 "endopeptidase activity" evidence=IDA

GO:0051047 "positive regulation of secretion" evidence=IMP

GO:0010954 "positive regulation of protein processing" evidence=ISS

GO:0031293 "membrane protein intracellular domain proteolysis" evidence=ISS

GO:0034620 "cellular response to unfolded protein" evidence=ISS

GO:0043687 "post-translational protein modification" evidence=ISS

GO:0005789 "endoplasmic reticulum membrane" evidence=ISS

GO:0030176 "integral to endoplasmic reticulum membrane" evidence=ISS

GO:0044322 "endoplasmic reticulum quality control compartment" evidence=ISS

GO:0030433 "ER-associated protein catabolic process" evidence=ISS

TAIR|locus:1005716534 RBL14 "RHOMBOID-like protein 14" [Arabidopsis thaliana (taxid:3702)]

 Score = 163 (62.4 bits), Expect = 4.7e-10, P = 4.7e-10
 Identities = 46/143 (32%), Positives = 73/143 (51%)

Query:    53 RIITSAFSHISVLHLVFNM-SALWSLGVVEQLGDVGLGTAYY--LQYTXXXXXXXXXXXX 109
             R+  SAF H++  HLV+NM S LW  G+  +L +  +G++ +  + +T            
Sbjct:    78 RLFLSAFYHVNEPHLVYNMMSLLWK-GI--KL-ETSMGSSEFASMVFTLIGMSQGVTLLL 133

Query:   110 XIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPFES 169
                 LL+  +   Y+    AVG+S V+F    +L+  Q      ++G L +P  +A +  
Sbjct:   134 AKSLLLLFDYDRAYYNEY-AVGFSGVLFAMKVVLN-SQAEDYSSVYGIL-VPTKYAAWAE 190

Query:   170 LIFTSIIVPQASFLGHLSGIIVG 192
             LI   + VP ASFLGHL GI+ G
Sbjct:   191 LILVQMFVPNASFLGHLGGILAG 213

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

UNIPROTKB|E2R6X6 RHBDD1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 153 (58.9 bits), Expect = 7.0e-09, P = 7.0e-09
 Identities = 53/177 (29%), Positives = 75/177 (42%)

Query:    25 IWFYIQKKNIGYSHVGLSYETAVDGHHW-RIITSAFSHISVLHLVFNM-SALWSLGVVEQ 82
             +WF++      Y    LS E       W R++ S   H    HL FNM S LW  G+   
Sbjct:    39 VWFFLNPLKPLYESC-LSVEKCYQQKDWQRLLLSPLHHADDWHLYFNMASMLWK-GI--N 94

Query:    83 LGDVGLGTAYYLQYTXXXXXXXXXXXXXIYHLLIQRFKLEY-FRRVTAVGYSCVVFGWMT 141
             L +  LG+ ++  Y                   +  F  E  FRR  AVG+S V+F    
Sbjct:    95 L-ERRLGSRWFA-YIIVTFSLLTGVVYLFLEFALAEFTDEPGFRRNCAVGFSGVLFALKV 152

Query:   142 ILSVKQPSSKLDLFGFLSLPISFAPFESLIFTSIIVPQASFLGHLSGIIVGYAIAWG 198
             + +   P    ++ GF  +P  FA +  L+    I P  SF GHL+GI+VG     G
Sbjct:   153 LNNHYCPGGFANILGF-PVPNRFACWAELVAIHFISPGTSFAGHLAGILVGLMYTHG 208

GO:0016021 "integral to membrane" evidence=IEA

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

UNIPROTKB|E2RD89 RHBDD1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 153 (58.9 bits), Expect = 7.0e-09, P = 7.0e-09
 Identities = 53/177 (29%), Positives = 75/177 (42%)

Query:    25 IWFYIQKKNIGYSHVGLSYETAVDGHHW-RIITSAFSHISVLHLVFNM-SALWSLGVVEQ 82
             +WF++      Y    LS E       W R++ S   H    HL FNM S LW  G+   
Sbjct:    39 VWFFLNPLKPLYESC-LSVEKCYQQKDWQRLLLSPLHHADDWHLYFNMASMLWK-GI--N 94

Query:    83 LGDVGLGTAYYLQYTXXXXXXXXXXXXXIYHLLIQRFKLEY-FRRVTAVGYSCVVFGWMT 141
             L +  LG+ ++  Y                   +  F  E  FRR  AVG+S V+F    
Sbjct:    95 L-ERRLGSRWFA-YIIVTFSLLTGVVYLFLEFALAEFTDEPGFRRNCAVGFSGVLFALKV 152

Query:   142 ILSVKQPSSKLDLFGFLSLPISFAPFESLIFTSIIVPQASFLGHLSGIIVGYAIAWG 198
             + +   P    ++ GF  +P  FA +  L+    I P  SF GHL+GI+VG     G
Sbjct:   153 LNNHYCPGGFANILGF-PVPNRFACWAELVAIHFISPGTSFAGHLAGILVGLMYTHG 208

GO:0051047 "positive regulation of secretion" evidence=IEA

GO:0048515 "spermatid differentiation" evidence=IEA

GO:0045732 "positive regulation of protein catabolic process" evidence=IEA

GO:0044322 "endoplasmic reticulum quality control compartment" evidence=IEA

GO:0043687 "post-translational protein modification" evidence=IEA

GO:0043066 "negative regulation of apoptotic process" evidence=IEA

GO:0034644 "cellular response to UV" evidence=IEA

GO:0034620 "cellular response to unfolded protein" evidence=IEA

GO:0031293 "membrane protein intracellular domain proteolysis" evidence=IEA

GO:0030433 "ER-associated protein catabolic process" evidence=IEA

GO:0030176 "integral to endoplasmic reticulum membrane" evidence=IEA

GO:0010954 "positive regulation of protein processing" evidence=IEA

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

UNIPROTKB|Q5RBS4 RHBDD1 "Rhomboid-related protein 4" [Pongo abelii (taxid:9601)]

 Score = 153 (58.9 bits), Expect = 7.2e-09, P = 7.2e-09
 Identities = 51/177 (28%), Positives = 77/177 (43%)

Query:    25 IWFYIQKKNIGYSHVGLSYETAVDGHHW-RIITSAFSHISVLHLVFNM-SALWSLGVVEQ 82
             IWF++  +   YS   LS E       W R++ S   H    HL FN  S LW  G+   
Sbjct:    39 IWFFLNPQKPLYSSC-LSVEKCYQQRDWQRLLLSPLHHADDWHLYFNTASVLWK-GI--N 94

Query:    83 LGDVGLGTAYYLQYTXXXXXXXXXXXXXIYHLLIQRFKLEY-FRRVTAVGYSCVVFGWMT 141
             L +  LG+ ++  Y              +    +  F  E  F+R  AVG+S V+F    
Sbjct:    95 L-ERRLGSRWFA-YVITTFSVLTGVVYLLLQFAVAEFMDEPDFKRSCAVGFSGVLFALKV 152

Query:   142 ILSVKQPSSKLDLFGFLSLPISFAPFESLIFTSIIVPQASFLGHLSGIIVGYAIAWG 198
             + +   P   +++ GF  +P  FA +  L+   +  P  SF GH +GI+VG     G
Sbjct:   153 LNNHYCPGGFVNILGF-PVPNRFACWVELVAIHLFSPGTSFAGHQAGILVGLMYTQG 208

GO:0004175 "endopeptidase activity" evidence=ISS

GO:0004252 "serine-type endopeptidase activity" evidence=ISS

GO:0005789 "endoplasmic reticulum membrane" evidence=ISS

GO:0010954 "positive regulation of protein processing" evidence=ISS

GO:0030176 "integral to endoplasmic reticulum membrane" evidence=ISS

GO:0030433 "ER-associated protein catabolic process" evidence=ISS

GO:0031293 "membrane protein intracellular domain proteolysis" evidence=ISS

GO:0033619 "membrane protein proteolysis" evidence=ISS

GO:0034620 "cellular response to unfolded protein" evidence=ISS

GO:0034644 "cellular response to UV" evidence=ISS

GO:0043066 "negative regulation of apoptotic process" evidence=ISS

GO:0043687 "post-translational protein modification" evidence=ISS

GO:0044322 "endoplasmic reticulum quality control compartment" evidence=ISS

GO:0045732 "positive regulation of protein catabolic process" evidence=ISS

GO:0048515 "spermatid differentiation" evidence=ISS

GO:0051047 "positive regulation of secretion" evidence=ISS

GO:2000254 "regulation of male germ cell proliferation" evidence=ISS

MGI|MGI:1924117 Rhbdd1 "rhomboid domain containing 1" [Mus musculus (taxid:10090)]

 Score = 152 (58.6 bits), Expect = 9.1e-09, P = 9.1e-09
 Identities = 49/176 (27%), Positives = 76/176 (43%)

Query:    25 IWFYIQKKNIGYSHVGLSYETAVDGHHW-RIITSAFSHISVLHLVFNM-SALWSLGVVEQ 82
             +WF++      Y H  +S E       W R++ S   H    HL FNM S LW  GV  +
Sbjct:    39 VWFFLNPWKPLY-HSCISVEKCYQQKDWQRLLLSPLHHGDDWHLYFNMVSMLWK-GV--K 94

Query:    83 LGDVGLGTAYYLQYTXXXXXXXXXXXXXIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTI 142
             L +  LG+ ++                 +   + +      F+R  AVG+S V+F    +
Sbjct:    95 L-ERRLGSRWFAYVIATFSLLTGVVYLLLQFTVAELLNQPDFKRNCAVGFSGVLFALKVL 153

Query:   143 LSVKQPSSKLDLFGFLSLPISFAPFESLIFTSIIVPQASFLGHLSGIIVGYAIAWG 198
              +   P   +++ GF  +P  FA +  L+      P  SF GHL+GI+VG     G
Sbjct:   154 SNHYCPGGFVNILGF-PVPNRFACWAELVAIHFCTPGTSFAGHLAGILVGLMYTQG 208

GO:0004175 "endopeptidase activity" evidence=ISO;ISS

GO:0004252 "serine-type endopeptidase activity" evidence=ISO;ISS

GO:0005515 "protein binding" evidence=IPI

GO:0005739 "mitochondrion" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005789 "endoplasmic reticulum membrane" evidence=IDA

GO:0006508 "proteolysis" evidence=IEA

GO:0006915 "apoptotic process" evidence=IEA

GO:0007283 "spermatogenesis" evidence=IEA

GO:0008233 "peptidase activity" evidence=IEA

GO:0008236 "serine-type peptidase activity" evidence=IEA

GO:0010954 "positive regulation of protein processing" evidence=IDA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0030154 "cell differentiation" evidence=IEA

GO:0030176 "integral to endoplasmic reticulum membrane" evidence=IDA

GO:0030433 "ER-associated protein catabolic process" evidence=IDA

GO:0031293 "membrane protein intracellular domain proteolysis" evidence=IDA

GO:0033619 "membrane protein proteolysis" evidence=ISO;ISS

GO:0034620 "cellular response to unfolded protein" evidence=IDA

GO:0034644 "cellular response to UV" evidence=IDA

GO:0043066 "negative regulation of apoptotic process" evidence=ISO;IMP

GO:0043687 "post-translational protein modification" evidence=IDA

GO:0044322 "endoplasmic reticulum quality control compartment" evidence=IDA

GO:0045732 "positive regulation of protein catabolic process" evidence=ISO;ISS

GO:0048515 "spermatid differentiation" evidence=IMP

GO:0051047 "positive regulation of secretion" evidence=ISO;ISS

GO:2000254 "regulation of male germ cell proliferation" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.4.21	0.691
3rd Layer	3.4.21.105	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	eugene3.00070158	hypothetical protein (269 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	gw1.XVIII.1336.1	hypothetical protein (209 aa)			•				•		0.408

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	269
pfam01694	146	pfam01694, Rhomboid, Rhomboid family	6e-19
COG0705	228	COG0705, COG0705, Membrane associated serine prote	9e-12
TIGR04239	271	TIGR04239, rhombo_GlpG, rhomboid family protease G	4e-06
PRK10907	276	PRK10907, PRK10907, intramembrane serine protease	4e-04

>gnl|CDD|216649 pfam01694, Rhomboid, Rhomboid family

 Score = 80.7 bits (200), Expect = 6e-19
 Identities = 45/153 (29%), Positives = 68/153 (44%), Gaps = 22/153 (14%)

Query: 52  WRIITSAFSHISVLHLVFNMSALWSLGV-VEQLGDVGLGTAYYLQYTLVLVVLSGLLVLG 110
           WR+ITS F H   LHL+FNM AL   G+ +E++    LG+  +L   L+  +   LL   
Sbjct: 8   WRLITSMFLHAGWLHLLFNMLALLFFGIPLERI----LGSVRFLLLYLLSGLAGSLLSYL 63

Query: 111 IYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLF---GFLSLPISFAPF 167
                             +VG S  +FG +  L V  P +++ LF   G L L +     
Sbjct: 64  FSPASS-----------PSVGASGAIFGLLGALLVLLPRNRILLFNFPGALLLLLGIILL 112

Query: 168 ESLIFTSIIVPQASFLGHLSGIIVGYAIAWGLI 200
             L+     +P  S   HL G+I G  + + L+
Sbjct: 113 NLLL---GFLPGISNFAHLGGLIAGLLLGFLLL 142

This family contains integral membrane proteins that are related to Drosophila rhomboid protein. Members of this family are found in bacteria and eukaryotes. Rhomboid promotes the cleavage of the membrane-anchored TGF-alpha-like growth factor Spitz, allowing it to activate the Drosophila EGF receptor. Analysis has shown that Rhomboid-1 is an intramembrane serine protease (EC:3.4.21.105). Parasite-encoded rhomboid enzymes are also important for invasion of host cells by Toxoplasma and the malaria parasite. Length = 146

>gnl|CDD|223777 COG0705, COG0705, Membrane associated serine protease [Amino acid transport and metabolism]

 Score = 62.9 bits (153), Expect = 9e-12
 Identities = 40/153 (26%), Positives = 63/153 (41%), Gaps = 21/153 (13%)

Query: 52  WRIITSAFSHISVLHLVFNMSALWSLGV-VEQLGDVGLGTAYYLQYTLVLVVLSGLLVLG 110
           WR+IT+ F H   LHL+FNM ALW  G  +E+     LGT  +L + L+  +L+GL    
Sbjct: 69  WRLITAIFLHAGFLHLLFNMLALWVFGSNLERR----LGTLRFLLFYLLSGLLAGLAQ-- 122

Query: 111 IYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPFESL 170
                             ++G S  +FG +    +  P +++ L        +       
Sbjct: 123 --------VLFGPKGGAPSLGASGAIFGLLGAYFLLFPFARILLLFLSLPRPALILILIW 174

Query: 171 IFTSIIVPQASFL------GHLSGIIVGYAIAW 197
           +  S+     SF        HL G+I G  +A 
Sbjct: 175 LLYSLFSGAGSFGPSVAWSAHLGGLIGGLLLAA 207

Length = 228

>gnl|CDD|234518 TIGR04239, rhombo_GlpG, rhomboid family protease GlpG

 Score = 46.5 bits (111), Expect = 4e-06
 Identities = 48/195 (24%), Positives = 83/195 (42%), Gaps = 33/195 (16%)

Query: 13  PATSCIIGICSVI--WFYIQKKNIGYSHVGLSYETAVDGHHWRIITSAFSHISVLHLVFN 70
           P T  ++ +C ++     +      +S +    + +     WR  T A  H S+LH++FN
Sbjct: 95  PLTLSVMALCILVFLLMQLGGDQQVFSALAFPADPSQQSQLWRWFTPALLHFSLLHIIFN 154

Query: 71  MSALWSL-GVVEQLGDVGLGTAYYLQYTLVLVVLSGL---LVLGIYHLLIQRFKLEYFRR 126
           +   W L G +E+     LG+   L   LV  +LS     LV G             F  
Sbjct: 155 LLWWWYLGGQIEKR----LGSGKLLVLFLVSALLSNWAQYLVSGP-----------NFGG 199

Query: 127 VTAVGYSCVVFGWMTILSVKQPSSKLDL----FGFLSLPISFAPFESLIFTSIIVPQASF 182
           ++ V Y+ V + W  +   + P S L L     GF+ + +    F  L+  SI     + 
Sbjct: 200 LSGVVYALVGYVW--LRGERAPESGLGLPRGLMGFMLVWL-VLGFFDLLGMSI-----AN 251

Query: 183 LGHLSGIIVGYAIAW 197
             HL+G+++G  +A+
Sbjct: 252 AAHLAGLLIGLLMAF 266

GlpG in E. coli is a rhomboid family intramembrane serine protease that has been extensively characterized as a proxy for rhomboid family proteases in animals. It efficiently cleaves eukaryote-derived model substrates. This multiple membrane-spanning protein excludes inappropriate substrates from access to its cleavage site, and shows activity against truncated versions, but not full-length versions, of the E. coli multidrug transporter MdfA. This finding suggests a housekeeping function in removing faulty proteins. In contrast, several eukaryotic rhomboid family proteases release peptide hormones for signaling functions, and the Shewanella and Vibrio protein rhombosortase appears to be part of a protein-sorting system, cleaving a C-terminal anchoring helix domain. Length = 271

>gnl|CDD|182828 PRK10907, PRK10907, intramembrane serine protease GlpG; Provisional

 Score = 40.8 bits (96), Expect = 4e-04
 Identities = 28/98 (28%), Positives = 48/98 (48%), Gaps = 11/98 (11%)

Query: 13  PATSCIIGICSVIWFYIQKKNIGY----SHVGLSYETAVDGHHWRIITSAFSHISVLHLV 68
           P T  ++  C V+  +I  + +G       +   ++ ++    WR  T A  H S+LH++
Sbjct: 95  PLTLGVMIACVVV--FILMQILGDQTVMLWLAWPFDPSLKFELWRYFTHALLHFSLLHIL 152

Query: 69  FNMSALWSL-GVVEQLGDVGLGTAYYLQYTLVLVVLSG 105
           FN+   W L G VE+     LG+   +  TL+  +LSG
Sbjct: 153 FNLLWWWYLGGAVEKR----LGSGKLIVITLISALLSG 186

Length = 276

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	269
KOG2632	258	consensus Rhomboid family proteins [Function unkno	99.96
PRK10907	276	intramembrane serine protease GlpG; Provisional	99.95
PTZ00101	278	rhomboid-1 protease; Provisional	99.94
COG0705	228	Membrane associated serine protease [Amino acid tr	99.9
PF01694	145	Rhomboid: Rhomboid family; InterPro: IPR022764 In	99.85
KOG2289	316	consensus Rhomboid family proteins [Signal transdu	99.78
KOG0858	239	consensus Predicted membrane protein [Function unk	99.64
PF04511	197	DER1: Der1-like family; InterPro: IPR007599 The en	99.61
KOG2290	652	consensus Rhomboid family proteins [Signal transdu	99.39
COG5291	313	Predicted membrane protein [Function unknown]	99.16
KOG2980	310	consensus Integral membrane protease of the rhombo	99.07
PF08551	99	DUF1751: Eukaryotic integral membrane protein (DUF	98.69
KOG4463	323	consensus Uncharacterized conserved protein [Funct	98.32
KOG2890	326	consensus Predicted membrane protein [Function unk	98.07

>KOG2632 consensus Rhomboid family proteins [Function unknown]

Probab=99.96  E-value=1.4e-27  Score=205.96  Aligned_cols=245  Identities=34%  Similarity=0.554  Sum_probs=189.3

Q ss_pred             CCccchhhccCccHHHHHHHHHHHHHHHHhhccccccccccchhhhccccchHHhHhHhhcCChhHHHHHHHHHHHHhH-
Q 046439            1 MGRPLFYEIMEKPATSCIIGICSVIWFYIQKKNIGYSHVGLSYETAVDGHHWRIITSAFSHISVLHLVFNMSALWSLGV-   79 (269)
Q Consensus         1 ~g~~~~~~~~~~pvt~~li~i~v~vfll~~~~~~~~~~~~l~~~~~~~~q~wrllT~~F~H~~~~Hll~Nm~~L~~~G~-   79 (269)
                      +|++.....+.+.+|..+..++.++|++....... +.+.+++....+.|.||++||+++|.+..|+++||+.+|..|. 
T Consensus         4 ~g~~~~~~~~~p~~ts~~~~~~~~i~lv~~~~~i~-~~~~l~~~~l~~~ql~RL~Ty~l~H~s~~hllfnmlaL~~~g~~   82 (258)
T KOG2632|consen    4 GGRVGQFWMKIPLLTSIVVVLAILIYLVSFFPGIV-EVLGLPSELLINWQLYRLITYALVHLSLPHLLFNMLALWPLGSQ   82 (258)
T ss_pred             cccCccccccchHHHHHHHHHHHHHHHHhccchhh-hHhcCCHHHhhhHHHHHHHHHHHHhccHHHHHHHHHHHHhchhH
Confidence            46666666667779999999999999987776544 5667777777789999999999999999999999999999996 


Q ss_pred             hhhhccCCcc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccchhHHHHHHHHHHHHHhcCCCceeeeecc
Q 046439           80 VEQLGDVGLG-TAYYLQYTLVLVVLSGLLVLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFL  158 (269)
Q Consensus        80 lE~~~~~~~G-~~~~l~~yl~~~l~~~~~~~l~~~ll~~~~~~~~~~~~~~vGaSg~v~gl~~~~~~~~p~~~~~l~~~~  158 (269)
                      +|+.    .| +.+++.+..+.++++|++..++++....   .+.+.+..++|.||..||+++......|.++..+++..
T Consensus        83 fE~~----~G~t~~~l~~~~llalf~gIl~ll~~~~~~~---~d~~~~~~a~G~s~v~Fam~~~~~~~sp~r~~~~fg~~  155 (258)
T KOG2632|consen   83 FERT----HGTTVRILMFTVLLALFSGILYLLAYHVFLL---SDLVYVEGAIGFSGVLFAMMAVLEVQSPVRSRSVFGLF  155 (258)
T ss_pred             HHhh----ccceehHHHHHHHHHHHHHHHHHHHHHHHhh---cchhhhcccccccHHHHHHHHHHhhcCcccchhhcccc
Confidence            9998    67 8899988899999999999888863321   22334667899999999999999999999998899998


Q ss_pred             chhhHHHHHHHHHHHHhhcCchhHHHhHHHHHHHHHHHHHHhh---ccchHHHHHHHHHHHHHHhHhhccCCCccccccc
Q 046439          159 SLPISFAPFESLIFTSIIVPQASFLGHLSGIIVGYAIAWGLIH---GMNNYWALSMLGWIVLVFVYSLKRSGTYDFNFLE  235 (269)
Q Consensus       159 ~i~~~~~~~~~l~~~~~~~~~~s~~aHl~G~l~G~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (269)
                      .+|.++.||+.++.+++..|+.|+.+|+||+++|++|++...+   ..++.+...-..+....+.....+-.....+-++
T Consensus       156 siP~~l~Pw~lLi~~~~lvp~aSFlghl~GllvG~ay~~~~f~lip~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v  235 (258)
T KOG2632|consen  156 SIPIVLAPWALLIATQILVPQASFLGHLCGLLVGYAYAFSSFGLIPGIRNYRAVTEAAWSLLRLAPWIQDLGSNSGRGIV  235 (258)
T ss_pred             cccHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHHHhhccCCcchhHHHhhhhhhhhhhcCCcHHHhccccCCcee
Confidence            9999999999999999999999999999999999999995332   2223222221111111111111111111135567


Q ss_pred             cccCCCCCcccccccccC
Q 046439          236 IESVTDPSLPSVRFIGNG  253 (269)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~  253 (269)
                      +++.+++..+.+...+|+
T Consensus       236 ~~~~~~~~~P~~~~~~~~  253 (258)
T KOG2632|consen  236 FPGLTGSPFPGPLHCQSG  253 (258)
T ss_pred             ccCcCCCCCCCccccCCc
Confidence            778888888888887776

>PRK10907 intramembrane serine protease GlpG; Provisional

Probab=99.95  E-value=7.3e-27  Score=207.66  Aligned_cols=178  Identities=24%  Similarity=0.354  Sum_probs=127.8

Q ss_pred             cchhhcc--CccHHHHHHHHHHHHHHHHhhcccc--ccccccchhhhccccchHHhHhHhhcCChhHHHHHHHHHHHHhH
Q 046439            4 PLFYEIM--EKPATSCIIGICSVIWFYIQKKNIG--YSHVGLSYETAVDGHHWRIITSAFSHISVLHLVFNMSALWSLGV   79 (269)
Q Consensus         4 ~~~~~~~--~~pvt~~li~i~v~vfll~~~~~~~--~~~~~l~~~~~~~~q~wrllT~~F~H~~~~Hll~Nm~~L~~~G~   79 (269)
                      ++.++.+  ..|+|..++++|+++|++.......  ...+.++.+....+|+||++|++|+|.|+.|+++||+++|.+|+
T Consensus        84 ~~~~~~~~~~~p~T~~li~i~i~vf~l~~~~~~~~~~~~l~~~~~~~~~~q~WRl~T~~flH~~~~Hl~fNml~l~~lG~  163 (276)
T PRK10907         84 PFLATLRERAGPLTLGVMIACVVVFILMQILGDQTVMLWLAWPFDPSLKFELWRYFTHALLHFSLLHILFNLLWWWYLGG  163 (276)
T ss_pred             hHHHhhccCCCCHHHHHHHHHHHHHHHHHHhccHHHHHHHhccccccccCCcHHHHhHHHHhCCHHHHHHHHHHHHHHHH
Confidence            3444555  5789999999999999987665421  12233333334459999999999999999999999999999997


Q ss_pred             -hhhhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccchhHHHHHHHHHHHHHhc---CCCceeee
Q 046439           80 -VEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQ---PSSKLDLF  155 (269)
Q Consensus        80 -lE~~~~~~~G~~~~l~~yl~~~l~~~~~~~l~~~ll~~~~~~~~~~~~~~vGaSg~v~gl~~~~~~~~---p~~~~~l~  155 (269)
                       +|+.    +|+++++.+|+++++++++.+...        .     .....|+||++||++++.....   |+....  
T Consensus       164 ~iE~~----~G~~~~l~l~l~s~i~~~~~~~~~--------~-----~~~~gGaSGvVygL~g~~~~~~~~~p~~~~~--  224 (276)
T PRK10907        164 AVEKR----LGSGKLIVITLISALLSGWVQSKF--------S-----GPWFGGLSGVVYALMGYVWLRGERDPQSGIY--  224 (276)
T ss_pred             HHHHH----HChHHHHHHHHHHHHHHHHHHHHH--------c-----cchhhHHHHHHHHHHHHHHHHhccccccchh--
Confidence             9999    899999999999999998875431        1     2246799999999999754432   322221  


Q ss_pred             eccchhhH--HHHHHHHHHHHhhcCchhHHHhHHHHHHHHHHHHHHhhc
Q 046439          156 GFLSLPIS--FAPFESLIFTSIIVPQASFLGHLSGIIVGYAIAWGLIHG  202 (269)
Q Consensus       156 ~~~~i~~~--~~~~~~l~~~~~~~~~~s~~aHl~G~l~G~l~~~~~~~~  202 (269)
                        .+-+..  .+.|+.+.+..+..+++++.||++|+++|+++++...+.
T Consensus       225 --lp~~~~~f~llwl~~g~~~~~g~~Ian~AHlgGli~Gll~g~~~~~~  271 (276)
T PRK10907        225 --LPRGLIAFALLWLVAGYFDLFGMSIANAAHVAGLAVGLAMAFWDTRN  271 (276)
T ss_pred             --hhHHHHHHHHHHHHHHHHHccCcccHHHHHHHHHHHHHHHHHHhhhh
Confidence              111111  122222233445567899999999999999998765443

>PTZ00101 rhomboid-1 protease; Provisional

Probab=99.94  E-value=1.7e-25  Score=198.58  Aligned_cols=174  Identities=16%  Similarity=0.235  Sum_probs=122.8

Q ss_pred             ccHHHHHHHHHHHHHHHHhhccc------c---cccccc-chhhhccccchHHhHhHhhcCChhHHHHHHHHHHHHhH-h
Q 046439           12 KPATSCIIGICSVIWFYIQKKNI------G---YSHVGL-SYETAVDGHHWRIITSAFSHISVLHLVFNMSALWSLGV-V   80 (269)
Q Consensus        12 ~pvt~~li~i~v~vfll~~~~~~------~---~~~~~l-~~~~~~~~q~wrllT~~F~H~~~~Hll~Nm~~L~~~G~-l   80 (269)
                      +++|..++++++++|++......      .   ...++. .++.+.++|+||++|++|+|.|+.|+++||+.++.+|. +
T Consensus        53 ~~l~~~Iiii~iivfil~l~~~~~~~l~p~~~~L~~~Ga~~~~~i~~gq~WRLiT~~FlH~~~~HLl~Nm~~l~~~G~~l  132 (278)
T PTZ00101         53 KSFIMAISIIQIIVFIISVSIKPADFLTPSDSLLVTLGANVASRIKQGEIHRLILPIFLHANIFHTFFNVFFQLRMGFTL  132 (278)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcccccCCCCHHHHHHHhCcchhhhhcCCCHHHHHHHHHccCHHHHHHHHHHHHHHHHHH
Confidence            56899999999999987655221      0   122333 44555569999999999999999999999999999997 9


Q ss_pred             hhhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccchhHHHHHHHHHHHHHh---c---CCCceee
Q 046439           81 EQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVK---Q---PSSKLDL  154 (269)
Q Consensus        81 E~~~~~~~G~~~~l~~yl~~~l~~~~~~~l~~~ll~~~~~~~~~~~~~~vGaSg~v~gl~~~~~~~---~---p~~~~~l  154 (269)
                      |+.    +|++|+..+|+.+++.+++++....            +...++||||++||++++....   .   .+.+...
T Consensus       133 E~~----~G~~r~~ilYl~sGi~G~l~s~~~~------------~~~~svGASgAifGLiGa~~~~lil~w~~~~~~~~~  196 (278)
T PTZ00101        133 EKN----YGIVKIIILYFLTGIYGNILSSSVT------------YCPIKVGASTSGMGLLGIVTSELILLWHVIRHRERV  196 (278)
T ss_pred             HHH----HChHHHHHHHHHHHHHHHHHHHHHc------------cCCcEEehhHHHHHHHHHHHHHHHHHHHhhccHHHH
Confidence            999    7999999999999999988765321            2346899999999999986421   1   1111110


Q ss_pred             eeccchhhHHHHHHHHHHHHhhcCchhHHHhHHHHHHHHHHHHHHhhccc
Q 046439          155 FGFLSLPISFAPFESLIFTSIIVPQASFLGHLSGIIVGYAIAWGLIHGMN  204 (269)
Q Consensus       155 ~~~~~i~~~~~~~~~l~~~~~~~~~~s~~aHl~G~l~G~l~~~~~~~~~~  204 (269)
                        +..+.. ...+..+.......+++|+.||+||+++|++++..+.+..+
T Consensus       197 --~~~~i~-~~li~~~l~~~~~g~~Id~~aHlGG~i~G~llg~~~~~~l~  243 (278)
T PTZ00101        197 --VFNIIF-FSLISFFYYFTFNGSNIDHVGHLGGLLSGISMGILYNSQME  243 (278)
T ss_pred             --HHHHHH-HHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHhhhh
Confidence              000000 00000111111234789999999999999999998877543

>COG0705 Membrane associated serine protease [Amino acid transport and metabolism]

Probab=99.90  E-value=9e-23  Score=177.55  Aligned_cols=180  Identities=26%  Similarity=0.395  Sum_probs=133.3

Q ss_pred             CccHHHHHHHHHHHHHHHHhhccccc--------cccccchhhhcc--c--cchHHhHhHhhcCChhHHHHHHHHHHHHh
Q 046439           11 EKPATSCIIGICSVIWFYIQKKNIGY--------SHVGLSYETAVD--G--HHWRIITSAFSHISVLHLVFNMSALWSLG   78 (269)
Q Consensus        11 ~~pvt~~li~i~v~vfll~~~~~~~~--------~~~~l~~~~~~~--~--q~wrllT~~F~H~~~~Hll~Nm~~L~~~G   78 (269)
                      .+++|..++.+|+++++.........        ......+.....  .  |+||++|++|+|.|+.|+++||+.+|.+|
T Consensus        16 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~lit~~FlH~~~~Hll~N~~~l~~fg   95 (228)
T COG0705          16 APPVTLFLILLNILVFLLELVLGWSAIFLLTFLFRLFGLYPLNLLGALARDQLWRLITAIFLHAGFLHLLFNMLALWVFG   95 (228)
T ss_pred             cchHHHHHHHHHHHHHHHHHHccchHHHHHHHhhhHHhhcchhhhccccccchHHHHHHHHHHhhHHHHHHHHHHHHHhh
Confidence            37799999999999999876654321        112333333322  2  89999999999999999999999999999


Q ss_pred             H-hhhhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccchhHHHHHHHHHHHHHhcCCCceeeeec
Q 046439           79 V-VEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGF  157 (269)
Q Consensus        79 ~-lE~~~~~~~G~~~~l~~yl~~~l~~~~~~~l~~~ll~~~~~~~~~~~~~~vGaSg~v~gl~~~~~~~~p~~~~~l~~~  157 (269)
                      . +|+.    +|+.+|+.+|+.+++++++.+...        .+.  ...+.+||||+++|+++++....|..+......
T Consensus        96 ~~le~~----~G~~~f~~~yl~~gl~~~~~~~~~--------~~~--~~~~~~GASG~i~gllga~~~~~~~~~~~~~~~  161 (228)
T COG0705          96 SNLERR----LGTLRFLLFYLLSGLLAGLAQVLF--------GPK--GGAPSLGASGAIFGLLGAYFLLFPFARILLLFL  161 (228)
T ss_pred             HHHHHH----hchhHHHHHHHHHHHHHHHHHHHH--------ccc--ccCcccchhHHHHHHHHHHHHHccccchhhhhc
Confidence            6 9999    899999999999999998874321        111  124789999999999999999999987766543


Q ss_pred             -cchhhHHHHHHHHHHHH---hhc--CchhHHHhHHHHHHHHHHHHHHhhccc
Q 046439          158 -LSLPISFAPFESLIFTS---IIV--PQASFLGHLSGIIVGYAIAWGLIHGMN  204 (269)
Q Consensus       158 -~~i~~~~~~~~~l~~~~---~~~--~~~s~~aHl~G~l~G~l~~~~~~~~~~  204 (269)
                       .+.+......+.++...   ...  +++++.+|++|++.|.+++..+.+..+
T Consensus       162 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~va~~aHl~G~i~G~l~~~~~~~~~~  214 (228)
T COG0705         162 SLPRPALILILIWLLYSLFSGAGSFGPSVAWSAHLGGLIGGLLLAALLSRKLR  214 (228)
T ss_pred             cCchhHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence             34444332222222221   112  258899999999999999998877654

>PF01694 Rhomboid: Rhomboid family; InterPro: IPR022764 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=99.85  E-value=1.3e-21  Score=157.96  Aligned_cols=139  Identities=34%  Similarity=0.539  Sum_probs=98.9

Q ss_pred             ccccchHHhHhHhhcCChhHHHHHHHHHHHHhH-hhhhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccc
Q 046439           47 VDGHHWRIITSAFSHISVLHLVFNMSALWSLGV-VEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQRFKLEYFR  125 (269)
Q Consensus        47 ~~~q~wrllT~~F~H~~~~Hll~Nm~~L~~~G~-lE~~~~~~~G~~~~l~~yl~~~l~~~~~~~l~~~ll~~~~~~~~~~  125 (269)
                      .++|+||++|++|+|.|+.|+++|++.++.+|. +|+.    .|++++..+|+.+++.+++...+..    .       .
T Consensus         2 ~~~~~wrl~T~~f~h~~~~hl~~n~~~l~~~g~~lE~~----~G~~~~~~~~l~~~~~~~l~~~~~~----~-------~   66 (145)
T PF01694_consen    2 QNGQWWRLFTSPFVHANFLHLLFNLLALWFFGSLLERR----LGSRRFLALYLLSGLLGSLLSLLFS----P-------P   66 (145)
T ss_dssp             GCC-TTHHHHGGG--SSHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH------------S
T ss_pred             CCCcchhhhHHHHHccCHHHHHHHHHHHHHhhhhHhhh----ccchHHHHHHHHHHHhhhhcccccc----c-------c
Confidence            358999999999999999999999999999997 9999    7999999999999998887765432    1       1


Q ss_pred             ccccchhHHHHHHHHHHHHHhcCCCceeeee---ccchhhHHHHHHHHHHHHhhcCchhHHHhHHHHHHHHHHHHHHhhc
Q 046439          126 RVTAVGYSCVVFGWMTILSVKQPSSKLDLFG---FLSLPISFAPFESLIFTSIIVPQASFLGHLSGIIVGYAIAWGLIHG  202 (269)
Q Consensus       126 ~~~~vGaSg~v~gl~~~~~~~~p~~~~~l~~---~~~i~~~~~~~~~l~~~~~~~~~~s~~aHl~G~l~G~l~~~~~~~~  202 (269)
                      ....+|+||+++|++++.+...|+.+.....   ...++...++.   .......+++++.+|++|+++|++++..++|+
T Consensus        67 ~~~~~G~Sg~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~hl~G~~~G~~~~~~~~~~  143 (145)
T PF01694_consen   67 NQPYVGASGAVFGLLGAFLFLYPQNKKRLRFIYLALVVPIIVLVI---ILLLGFIPNISFLGHLGGFLAGLLYGFLILRR  143 (145)
T ss_dssp             -----SSHHHHHHHHHHHHHHHHCCCCCS---HCCCCCCCCCCCH---HHCTSSSSTTTHHHHHHHHHHHHHHHHHHCH-
T ss_pred             ccccCCCcccchHHHHHHHHHHhhccchhhcchHHHHHHHHHHHH---HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHc
Confidence            2278999999999999988887776433321   11122111111   11111257899999999999999999999876


Q ss_pred             c
Q 046439          203 M  203 (269)
Q Consensus       203 ~  203 (269)
                      +
T Consensus       144 ~  144 (145)
T PF01694_consen  144 P  144 (145)
T ss_dssp             -
T ss_pred             c
Confidence            5

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of proteins contain serine peptidases belonging to the MEROPS peptidase family S54 (Rhomboid, clan ST). They are integral membrane proteins related to the Drosophila melanogaster (Fruit fly) rhomboid protein P20350 from SWISSPROT. Members of this family are found in archaea, bacteria and eukaryotes. The D. melanogaster rhomboid protease cleaves type-1 transmembrane domains using a catalytic triad composed of serine, histidine and asparagine contributed by different transmembrane domains. It cleaves the transmembrane proteins Spitz, Gurken and Keren within their transmembrane domains to release a soluble TGFalpha-like growth factor. Cleavage occurs in the Golgi, following translocation of the substrates from the endoplasmic reticulum membrane by Star, another transmembrane protein. The growth factors are then able to activate the epidermal growth factor receptor [, ]. Few substrates of mammalian rhomboid homologues have been determined, but rhomboid-like protein 2 (MEROPS S54.002) has been shown to cleave ephrin B3 []. Parasite-encoded rhomboid enzymes are also important for invasion of host cells by Toxoplasma and the malaria parasite. In Saccharomyces cerevisiae (Baker's yeast) the Pcp1 (MDM37) protein (MEROPS S54.007) is a mitochondrial endopeptidase required for the activation of cytochrome c peroxidase and for the processing of the mitochondrial dynamin-like protein Mgm1 [, ]. Mutations in Pcp1 result in cells have fragmented mitochondria, which have very few short tubulues []. This entry represents the 6 transmembrane helix rhomboid domain.; GO: 0004252 serine-type endopeptidase activity, 0016021 integral to membrane; PDB: 3UBB_A 3B45_A 3B44_A 2NRF_A 3TXT_A 2O7L_A 2XTU_A 2IRV_A 2XOW_A 2XTV_A ....

>KOG2289 consensus Rhomboid family proteins [Signal transduction mechanisms]

Probab=99.78  E-value=5.7e-20  Score=164.81  Aligned_cols=138  Identities=20%  Similarity=0.295  Sum_probs=99.2

Q ss_pred             hhhccccchHHhHhHhhcCChhHHHHHHHHHHHHhH-hhhhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 046439           44 ETAVDGHHWRIITSAFSHISVLHLVFNMSALWSLGV-VEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQRFKLE  122 (269)
Q Consensus        44 ~~~~~~q~wrllT~~F~H~~~~Hll~Nm~~L~~~G~-lE~~~~~~~G~~~~l~~yl~~~l~~~~~~~l~~~ll~~~~~~~  122 (269)
                      +...++|+||++||+|+|+|+.|+++||+.+..+|. +|+.    .|..|+..+|+++++.|++++++.-          
T Consensus       112 ~~~~r~E~WRllTym~LHaGi~HL~~N~~~ql~iGi~LE~~----~G~~RiglIYl~gg~aGSlls~l~d----------  177 (316)
T KOG2289|consen  112 KPVHRGELWRLLTYMWLHAGIFHLLLNMLSQLFIGIPLEQV----HGFLRIGLIYLAGGVAGSLLSSLFD----------  177 (316)
T ss_pred             ChhhhchhHHHHHHHHHhcCHHHHHHHHHHHHhccccHHhh----cCceEEeeehhhhhhhhHHHHHHhc----------
Confidence            344459999999999999999999999999999995 9999    6999999999999999999876531          


Q ss_pred             cccccccchhHHHHHHHHHHHHHhc-CCCceeeeeccchhhH-HHHHHHH---HHHHhhcCchhHHHhHHHHHHHHHHHH
Q 046439          123 YFRRVTAVGYSCVVFGWMTILSVKQ-PSSKLDLFGFLSLPIS-FAPFESL---IFTSIIVPQASFLGHLSGIIVGYAIAW  197 (269)
Q Consensus       123 ~~~~~~~vGaSg~v~gl~~~~~~~~-p~~~~~l~~~~~i~~~-~~~~~~l---~~~~~~~~~~s~~aHl~G~l~G~l~~~  197 (269)
                        ++...+||||++|||+++...-. -|.+.     ..-+.. ....+.+   .......+.+++.+|++|+..|..+++
T Consensus       178 --~~~~sVGASggvfaLlgA~Ls~l~~Nw~~-----m~~~~~~l~~ll~Ii~i~l~~G~~~~~~~~~h~gg~~~G~~~~f  250 (316)
T KOG2289|consen  178 --PNSISVGASGGVFALLGAHLSNLLTNWTI-----MKNKFAALRTLLIIIFINLDLGFAPYVDNFAHIGGLLAGFLLGF  250 (316)
T ss_pred             --cCCceecccHHHHHHHHHHHHHHHhhHHH-----hcchHHHHHHHHHHHHHHHhhccccceeccccccccCCCcchhH
Confidence              46679999999999999874321 11110     000010 0011111   111123356778889888888888888


Q ss_pred             HHhhc
Q 046439          198 GLIHG  202 (269)
Q Consensus       198 ~~~~~  202 (269)
                      ....+
T Consensus       251 il~~~  255 (316)
T KOG2289|consen  251 VLHIG  255 (316)
T ss_pred             Hhhhc
Confidence            76654

>KOG0858 consensus Predicted membrane protein [Function unknown]

Probab=99.64  E-value=4.8e-15  Score=126.78  Aligned_cols=173  Identities=23%  Similarity=0.269  Sum_probs=137.0

Q ss_pred             hccC-ccHHHHHHHHHHHHHHHHhhccccccccccchhhhcc-ccchHHhHhHhhcCC-hhHHHHHHHHHHHHhH-hhhh
Q 046439            8 EIME-KPATSCIIGICSVIWFYIQKKNIGYSHVGLSYETAVD-GHHWRIITSAFSHIS-VLHLVFNMSALWSLGV-VEQL   83 (269)
Q Consensus         8 ~~~~-~pvt~~li~i~v~vfll~~~~~~~~~~~~l~~~~~~~-~q~wrllT~~F~H~~-~~Hll~Nm~~L~~~G~-lE~~   83 (269)
                      .+.+ +|+|+.....|+++.++.+..-+++.++.++|+.+.+ .|+||++|+.+.-+. -+|.++||+.+|..++ +|+-
T Consensus         8 ~~~~iPpVTR~~~~~~v~tt~~~~l~lIsP~~l~~~p~Lv~kk~QiWRliTs~lyfg~~gf~fl~n~~FlyrY~~~LE~g   87 (239)
T KOG0858|consen    8 FYLQIPPVTRYYTTACVVTTLLVRLDLISPFQLYLNPELVFKKFQIWRLITSFLYFGPFGFDFLMNLYFLYRYSSMLEEG   87 (239)
T ss_pred             HHhcCChHHHHHHHHHHHHHHHHhhcccCchheEecHHHHHhHhHHHHhhhhhheeccccHHHHHHHHHHHHHHHHHhcC
Confidence            3344 7799999999999999998887788899999999986 999999999999976 4899999999999997 9986


Q ss_pred             ccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccchhHHHHHHHHHHHHHhcCCCceeeeeccchhhH
Q 046439           84 GDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPIS  163 (269)
Q Consensus        84 ~~~~~G~~~~l~~yl~~~l~~~~~~~l~~~ll~~~~~~~~~~~~~~vGaSg~v~gl~~~~~~~~p~~~~~l~~~~~i~~~  163 (269)
                      .-++ -+++|+...+.++++-.+.+.. +             ....+ .++-++.+...++..+|+.++++++.+.++..
T Consensus        88 ~f~~-rtadf~~mllf~~~l~~~~~~~-~-------------~~~fL-g~~l~~~l~YvWs~~Np~~~v~F~g~~~f~a~  151 (239)
T KOG0858|consen   88 SFRG-RTADFLYMLLFGAVLLTLTGLF-V-------------YIVFL-GQSLVFMLVYVWSKRNPDVIVSFFGLITFKAP  151 (239)
T ss_pred             CCCC-chhHHHHHHHHHHHHHHHHHHH-H-------------HHHHH-HHHHHHHHHHHHHhhCCCceEEEEEEecCccc
Confidence            4110 2577876666555555443321 1             11223 45567788888999999999999999999999


Q ss_pred             HHHHHHHHHHHhhcCchhHHHhHHHHHHHHHHHHH
Q 046439          164 FAPFESLIFTSIIVPQASFLGHLSGIIVGYAIAWG  198 (269)
Q Consensus       164 ~~~~~~l~~~~~~~~~~s~~aHl~G~l~G~l~~~~  198 (269)
                      |+||+++.++.+...+ + ...+-|+++|++|-..
T Consensus       152 YlPwvll~fs~l~g~~-~-~~dllGi~~GHiy~fl  184 (239)
T KOG0858|consen  152 YLPWVLLGFSFLFGGS-I-LVDLLGIIVGHIYYFL  184 (239)
T ss_pred             cchHHHHHHHHHhCCc-h-HHHHHhhhhheeEEEE
Confidence            9999998888766543 4 8999999999987554

>PF04511 DER1: Der1-like family; InterPro: IPR007599 The endoplasmic reticulum (ER) of the yeast Saccharomyces cerevisiae (Baker's yeast) contains a proteolytic system able to selectively degrade misfolded lumenal secretory proteins

Probab=99.61  E-value=1.7e-14  Score=123.03  Aligned_cols=175  Identities=23%  Similarity=0.299  Sum_probs=131.3

Q ss_pred             ccHHHHHHHHHHHHHHHHhhccccccccccchhhhcc-ccchHHhHhHhhcCCh-hHHHHHHHHHHHHhH-hhhhccCCc
Q 046439           12 KPATSCIIGICSVIWFYIQKKNIGYSHVGLSYETAVD-GHHWRIITSAFSHISV-LHLVFNMSALWSLGV-VEQLGDVGL   88 (269)
Q Consensus        12 ~pvt~~li~i~v~vfll~~~~~~~~~~~~l~~~~~~~-~q~wrllT~~F~H~~~-~Hll~Nm~~L~~~G~-lE~~~~~~~   88 (269)
                      +|+|+.++..++++.++....-.++.++.++++.+.+ +|+||++|+.|..++. .++++|++.++..++ +|+..-. -
T Consensus         2 PpVTR~~~~~~~~~s~l~~~~~~~~~~l~~~~~~v~~~~q~WRl~Tsff~~g~~~~~~l~~~~~l~~~s~~LE~~~f~-~   80 (197)
T PF04511_consen    2 PPVTRYWLISTVALSLLVSFGIISPYYLYFDWELVFKKFQIWRLFTSFFYFGPFSLNFLFNLYFLYQYSSSLEEGHFQ-G   80 (197)
T ss_pred             ChhHHHHHHHHHHHHHHHHCCCCCHHHeeECcHHHhhhcCceeeEEEEEEEcCCCHHHHHHHHHHHHHhhHhccCCCC-C
Confidence            6899999999999998887765667778899988875 9999999999998776 699999999999997 9997311 1


Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccchhHHHHHHHHHHHHHhcCCCceeeeeccchhhHHHHHH
Q 046439           89 GTAYYLQYTLVLVVLSGLLVLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPFE  168 (269)
Q Consensus        89 G~~~~l~~yl~~~l~~~~~~~l~~~ll~~~~~~~~~~~~~~vGaSg~v~gl~~~~~~~~p~~~~~l~~~~~i~~~~~~~~  168 (269)
                      .+.+|+...+.++....+++.+..         ....+.... .++...++...++..+|+.++++++++++|.+++|++
T Consensus        81 ~~ady~~~ll~~~~~i~~~~~~~~---------~~~~~~~~l-~~~l~~~l~Y~wsr~np~~~v~~~g~~~i~a~ylP~~  150 (197)
T PF04511_consen   81 RSADYLWFLLFGASLILILSLLIG---------PYFFNIPFL-GSSLSFALTYIWSRKNPNAQVSFFGLFTIKAKYLPWV  150 (197)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHhhc---------cchhHHHHH-HHHHHHHHHHHHHHhCcccceeeEEEEEEChhhHHHH
Confidence            246776554433333322222111         000011223 4667888888999999999999999889999999999


Q ss_pred             HHHHHHhhcCchhHHHhHHHHHHHHHHHHH
Q 046439          169 SLIFTSIIVPQASFLGHLSGIIVGYAIAWG  198 (269)
Q Consensus       169 ~l~~~~~~~~~~s~~aHl~G~l~G~l~~~~  198 (269)
                      .+++..+..+ .+...++.|+++|++|-..
T Consensus       151 ~~~~~~l~~~-~~~~~~l~Gi~~Ghly~fl  179 (197)
T PF04511_consen  151 LLAFSLLFGG-SSPIPDLLGILVGHLYYFL  179 (197)
T ss_pred             HHHHHHHhCC-CcHHHHHHHHHHHHHHHHH
Confidence            8887765554 3567999999999999765

For examination of the components involved in this degradation process, mutants were isolated. They could be divided into four complementation groups. The mutations led to stabilisation of two different substrates for this process, and the classes were called der for degradation in the ER. DER1 was cloned by complementation of the der1-2 mutation. The DER1 gene codes for a novel, hydrophobic protein that is localized to the ER. Deletion of DER1 abolished degradation of the substrate proteins, suggesting that the function of the Der1 protein may be specifically required for the degradation process associated with the ER []. Interestingly this family seems distantly related to the Rhomboid family of membrane peptidases. This family may also mediate degradation of misfolded proteins.

>KOG2290 consensus Rhomboid family proteins [Signal transduction mechanisms]

Probab=99.39  E-value=4.1e-13  Score=123.52  Aligned_cols=140  Identities=18%  Similarity=0.130  Sum_probs=104.6

Q ss_pred             ccchHHhHhHhhcCChhHHHHHHHHHHHHhH-hhhhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccc
Q 046439           49 GHHWRIITSAFSHISVLHLVFNMSALWSLGV-VEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQRFKLEYFRRV  127 (269)
Q Consensus        49 ~q~wrllT~~F~H~~~~Hll~Nm~~L~~~G~-lE~~~~~~~G~~~~l~~yl~~~l~~~~~~~l~~~ll~~~~~~~~~~~~  127 (269)
                      .|.||+.|+.|+|+|..|++..+.+.+.+-+ +|+.    .|+.|...+|+++++.|++.+.++.            +..
T Consensus       449 dQfYRL~~SLFlHagviH~~vSi~FQm~vmrdlEkL----~g~~riAIiy~~SGitGNLASAIFl------------pY~  512 (652)
T KOG2290|consen  449 DQFYRLWLSLFLHAGVIHLLVSICFQMTVMRDLEKL----AGWHRIAIIYFLSGITGNLASAIFL------------PYR  512 (652)
T ss_pred             hHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHh----hcchhhheeeecccccccchheeee------------ccc
Confidence            8999999999999999999999999998887 9999    8999999999999999998875421            455


Q ss_pred             ccchhHHHHHHHHHHHHHhcCCCceeeeeccchhhHHHHHHHHHHHHhhcCchhHHHhHHHHHHHHHHHHHHhhccch
Q 046439          128 TAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPFESLIFTSIIVPQASFLGHLSGIIVGYAIAWGLIHGMNN  205 (269)
Q Consensus       128 ~~vGaSg~v~gl~~~~~~~~p~~~~~l~~~~~i~~~~~~~~~l~~~~~~~~~~s~~aHl~G~l~G~l~~~~~~~~~~~  205 (269)
                      +.+|.||+-+|+++...+-.-+.+..+-.-...-..+++.++.+.+ .+.|.++++||+.|.+.|++.+..+++-.+.
T Consensus       513 ~eVgPa~sQ~Gila~l~vEl~qs~~il~~~w~a~~~Lia~~L~L~i-GliPWiDN~aHlfG~i~GLl~s~~~~PYi~F  589 (652)
T KOG2290|consen  513 AEVGPAGSQFGILACLFVELFQSWQILERPWRAFFHLIATLLVLCI-GLIPWIDNWAHLFGTIFGLLTSIIFLPYIDF  589 (652)
T ss_pred             cccCCcccccchHHHHHHHHHhhhHhhhhHHHHHHHHHHHHHHHHh-ccccchhhHHHHHHHHHHHHHHHHhhccccc
Confidence            7899999999998866543222221111000011112222211222 4668999999999999999999999887665

>COG5291 Predicted membrane protein [Function unknown]

Probab=99.16  E-value=7e-11  Score=101.19  Aligned_cols=164  Identities=20%  Similarity=0.250  Sum_probs=107.8

Q ss_pred             CccHHHHHHHHHHHHHHHHhhccccccccccchhhhcc-ccchHHhHhHhhcCCh-hHHHHHHHHHHHHhH-hhhhccCC
Q 046439           11 EKPATSCIIGICSVIWFYIQKKNIGYSHVGLSYETAVD-GHHWRIITSAFSHISV-LHLVFNMSALWSLGV-VEQLGDVG   87 (269)
Q Consensus        11 ~~pvt~~li~i~v~vfll~~~~~~~~~~~~l~~~~~~~-~q~wrllT~~F~H~~~-~Hll~Nm~~L~~~G~-lE~~~~~~   87 (269)
                      =+|+|+.+..+..++.++.......+.++.+.++...+ .|+||++|+....++. +..++|.+.+|...+ +|+-.   
T Consensus        19 IPPITRy~~ll~~a~til~~~~lvsPwy~ly~~pL~~k~~qiwRlfTs~~~~~~~~~d~~M~vyf~Y~yS~~LE~g~---   95 (313)
T COG5291          19 IPPITRYMTLLISAVTILVYVDLVSPWYSLYYSPLFLKRLQIWRLFTSFLYFGKPTLDMFMHVYFLYRYSRMLEEGC---   95 (313)
T ss_pred             CCcHHHHHHHHHHHHHHHHHHhhcCccceeeechhHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHhccc---
Confidence            58899999888888888776655555555666666665 9999999999888865 799999999999997 99875   


Q ss_pred             cchH--HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccchhHHHHHHHHHHHHHhcCCCceeeeeccchhhHHH
Q 046439           88 LGTA--YYLQYTLVLVVLSGLLVLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFA  165 (269)
Q Consensus        88 ~G~~--~~l~~yl~~~l~~~~~~~l~~~ll~~~~~~~~~~~~~~vGaSg~v~gl~~~~~~~~p~~~~~l~~~~~i~~~~~  165 (269)
                      +|+.  +|..+.+...++--.++.+ +            ....++ -++-.-++-..|...+|+.++.++++++++.+|+
T Consensus        96 f~~~lv~Y~~yl~~~~l~i~a~s~I-~------------gg~saL-~tsf~a~ItY~WS~~N~~~~Iqf~g~i~v~gkYl  161 (313)
T COG5291          96 FNTSLVEYFWYLLVISLVIFAISNI-Y------------GGISAL-GTSFSATITYIWSKRNPRAIIQFFGFISVPGKYL  161 (313)
T ss_pred             cCccHHHHHHHHHHHHHHHHHHHHH-h------------cchhhh-cchhhhheeeeeeecCCceEEEEEEeeecchhhh
Confidence            4544  5543322222221111111 1            011112 1222223334567788999999999999999999


Q ss_pred             HHHHHHHHHhhcCchhHHHhHHHHHHH
Q 046439          166 PFESLIFTSIIVPQASFLGHLSGIIVG  192 (269)
Q Consensus       166 ~~~~l~~~~~~~~~~s~~aHl~G~l~G  192 (269)
                      |++.+.++.+... ....-.+-|+.+|
T Consensus       162 P~Illgfsfl~~~-g~~i~~vlGf~~g  187 (313)
T COG5291         162 PFILLGFSFLSRR-GISIDDVLGFVVG  187 (313)
T ss_pred             hHHHHHHHHHhcC-Cccceeeeeeeec
Confidence            9998877765432 2334444555544

>KOG2980 consensus Integral membrane protease of the rhomboid family involved in different forms of regulated intramembrane proteolysis [Signal transduction mechanisms]

Probab=99.07  E-value=6.3e-11  Score=104.71  Aligned_cols=177  Identities=21%  Similarity=0.194  Sum_probs=117.6

Q ss_pred             HHHHHHHHHHHHHHHHhhcccc--ccccccchhhhccccchHHhHhHhhcCChhHHHHHHHHHHHHhH--hhhhccCCcc
Q 046439           14 ATSCIIGICSVIWFYIQKKNIG--YSHVGLSYETAVDGHHWRIITSAFSHISVLHLVFNMSALWSLGV--VEQLGDVGLG   89 (269)
Q Consensus        14 vt~~li~i~v~vfll~~~~~~~--~~~~~l~~~~~~~~q~wrllT~~F~H~~~~Hll~Nm~~L~~~G~--lE~~~~~~~G   89 (269)
                      +...++.+|+.+|.++......  ...+.++ +.....-.|.++++.|.|.+.+|+..||+.++.+..  +...    +|
T Consensus       117 ~v~~ll~~n~~vf~lWrv~~~~~~~~~~mls-~~~~~t~~w~i~~s~Fsh~~a~h~g~~~~~~~~y~~~a~~~~----~~  191 (310)
T KOG2980|consen  117 VVFGLLIANAFVFTLWRVPQKQFTMIPWMLS-RNAYKTGCWKIILSTFSHYSALHLGPNMLVLKSYLAGALKGS----LG  191 (310)
T ss_pred             chhHHHHHHHHHHHHHHhcchhhhhhhHHhh-cccccccceeEEeehhcchhHhhhcHHHHHHHHHhcccccCC----cc
Confidence            7889999999999998775421  1111111 122234456699999999999999999998887763  4444    67


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccchhHHHHHHHHHHHHHhcCCCceeeeeccchhhHH-HHHH
Q 046439           90 TAYYLQYTLVLVVLSGLLVLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISF-APFE  168 (269)
Q Consensus        90 ~~~~l~~yl~~~l~~~~~~~l~~~ll~~~~~~~~~~~~~~vGaSg~v~gl~~~~~~~~p~~~~~l~~~~~i~~~~-~~~~  168 (269)
                      ...+..+|+.....+..+ .....       .+..+..+.+||||++|++.+..+.+.|+.+..+.+..+++.-. .++-
T Consensus       192 ~~~~~AlylSa~~~~~~i-~~~~~-------v~~~~~gp~LGAsGav~ai~a~~~~lfP~~~~~i~f~~~v~~ga~~~~~  263 (310)
T KOG2980|consen  192 FSSFFALYLSAGVKGLFI-SVKDK-------VPTSWAGPSLGASGAVYAILALDCTLFPKTTLYILFVFPVPAGAGLAFK  263 (310)
T ss_pred             hhhcccceecccccccee-Eeecc-------ccccccccccccchHHHHHHHHHhhcCcCcceeEEEeecccccchhHHH
Confidence            777877776333333221 11110       11224567899999999999999999999998888777777632 1211


Q ss_pred             HHHHH---Hhh--cCchhHHHhHHHHHHHHHHHHHHhhcc
Q 046439          169 SLIFT---SII--VPQASFLGHLSGIIVGYAIAWGLIHGM  203 (269)
Q Consensus       169 ~l~~~---~~~--~~~~s~~aHl~G~l~G~l~~~~~~~~~  203 (269)
                      .++..   .+.  ...-++.||++|.+.|..++....+..
T Consensus       264 ~i~~~~~a~~~l~~~~~n~~Ah~~gsl~Gv~va~~~~~ri  303 (310)
T KOG2980|consen  264 AIAAYDFAGLILGWGFFNHAAHLSGSLFGVVVATYLWARI  303 (310)
T ss_pred             HHHHhhhcceeeccccchhHhhhcchHHHHHHHHHHHHHH
Confidence            11111   111  123577899999999999998875544

>PF08551 DUF1751: Eukaryotic integral membrane protein (DUF1751); InterPro: IPR013861 This entry is found in eukaryotic integral membrane proteins

Probab=98.69  E-value=4.1e-08  Score=74.54  Aligned_cols=90  Identities=26%  Similarity=0.484  Sum_probs=69.4

Q ss_pred             ccchHHhHhHhhcCChhHHHHHHHHHHHHhH-hhhhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccc
Q 046439           49 GHHWRIITSAFSHISVLHLVFNMSALWSLGV-VEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQRFKLEYFRRV  127 (269)
Q Consensus        49 ~q~wrllT~~F~H~~~~Hll~Nm~~L~~~G~-lE~~~~~~~G~~~~l~~yl~~~l~~~~~~~l~~~ll~~~~~~~~~~~~  127 (269)
                      .++||++|+.|++.++..+++|.+.++..|+ +|+.    .|+++++.++....+.++++..+.+.+......++.+-..
T Consensus         6 ~~pWtl~T~~fve~~i~~~l~~~~~l~~~g~~lE~~----WGs~E~lkFi~vv~~~tnl~~~~~~~~~y~i~~~~~~l~~   81 (99)
T PF08551_consen    6 PYPWTLFTAGFVETNIIGLLFSLLTLFYGGRYLEPI----WGSREFLKFILVVNVITNLLTFLLYLLLYAITGNESYLFV   81 (99)
T ss_pred             eehHHHHHHHHHHhHHHHHHHHHHHHHHhhHHHHHh----cChHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCceeEE
Confidence            4899999999999999999999999999998 9999    5999999999888888888776555443322222221124


Q ss_pred             ccchhHHHHHHHHHH
Q 046439          128 TAVGYSCVVFGWMTI  142 (269)
Q Consensus       128 ~~vGaSg~v~gl~~~  142 (269)
                      +-.|.+|...|++++
T Consensus        82 ~i~G~~~~~~g~lVa   96 (99)
T PF08551_consen   82 PISGFMGVLAGFLVA   96 (99)
T ss_pred             EecCcHHhHhheEEE
Confidence            566778877776543

Q12239 from SWISSPROT, a Saccharomyces cerevisiae (Baker's yeast) protein, has been shown to localise COP II vesicles [].

>KOG4463 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.32  E-value=1.4e-06  Score=75.83  Aligned_cols=123  Identities=21%  Similarity=0.317  Sum_probs=84.2

Q ss_pred             ccCccHHHHHHHHHHHHHHHHhhccccccccccchhhhcc--ccchHHhHhHhhcCChhHHHHHHHHHHHHhHhhhhccC
Q 046439            9 IMEKPATSCIIGICSVIWFYIQKKNIGYSHVGLSYETAVD--GHHWRIITSAFSHISVLHLVFNMSALWSLGVVEQLGDV   86 (269)
Q Consensus         9 ~~~~pvt~~li~i~v~vfll~~~~~~~~~~~~l~~~~~~~--~q~wrllT~~F~H~~~~Hll~Nm~~L~~~G~lE~~~~~   86 (269)
                      ..+-|+|+.+++-..++-++..+.. .-..+.+++++...  .|+||++-+.|+..+-..+.+-.+.+|.+-.+||.   
T Consensus         8 ~~nmpVTK~~~iT~~~~~vvagI~~-~k~~f~l~y~~~l~~y~qywrlL~~qF~~~n~~e~~~~l~I~Y~fR~~ERl---   83 (323)
T KOG4463|consen    8 FHNMPVTKAFVITSALFTVVAGIQG-RKSKFGLSYQDILEKYFQYWRLLMSQFAFSNTPELMFGLYILYYFRVFERL---   83 (323)
T ss_pred             ccccchHHHHHHHHHHHHHHHHhhh-cccccccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHH---
Confidence            4467899987776665555443332 12356788877653  89999999999999999999999999998889999   


Q ss_pred             CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccchhHHHHHHHHH
Q 046439           87 GLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMT  141 (269)
Q Consensus        87 ~~G~~~~l~~yl~~~l~~~~~~~l~~~ll~~~~~~~~~~~~~~vGaSg~v~gl~~  141 (269)
                       +|+.||..+.+.++..+-++...+..+....+     .+.-.++..|.+|+...
T Consensus        84 -LGShky~~fiv~s~~~~~l~~~il~~l~~~~~-----~nl~~~qp~~liFa~~~  132 (323)
T KOG4463|consen   84 -LGSHKYSVFIVFSGTVSLLLEVILLSLLKDTT-----ANLLTSQPYGLIFASFI  132 (323)
T ss_pred             -hccccceeehhHHHHHHHHHHHHHHHHHHHHH-----hhhhhcCCCceeeeecc
Confidence             89999998777666666555433222222111     12234555556666653

>KOG2890 consensus Predicted membrane protein [Function unknown]

Probab=98.07  E-value=5.7e-05  Score=67.25  Aligned_cols=149  Identities=17%  Similarity=0.228  Sum_probs=92.3

Q ss_pred             ccchHHhHhHhhcCChhHHHHHHHHHHHHhH-hhhhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccc
Q 046439           49 GHHWRIITSAFSHISVLHLVFNMSALWSLGV-VEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQRFKLEYFRRV  127 (269)
Q Consensus        49 ~q~wrllT~~F~H~~~~Hll~Nm~~L~~~G~-lE~~~~~~~G~~~~l~~yl~~~l~~~~~~~l~~~ll~~~~~~~~~~~~  127 (269)
                      ..+|+++|+.|+-.+.+-.+.|.+.|-..|+ +|+.    .|+..++..+.+.-...+++..+.+.+.-..+....+-..
T Consensus        65 ~~~WtliTs~fie~~vw~V~~sv~~L~v~G~~lEp~----Wg~~e~lkff~ivn~~~~l~v~v~~~l~Y~it~n~v~L~~  140 (326)
T KOG2890|consen   65 FFPWTLITSGFIELNVWDVLVSVLTLSVGGKFLEPN----WGSLELLKFFAIVNGSTTLVVLVPALLLYMITDNHVYLYI  140 (326)
T ss_pred             hhhHHHHhcchhhhhHHHHHHHHHheeecceeeccC----CCCHHHHHHHHHhhchhHHHHHHHHHHHHHHhcCceEEEE
Confidence            6899999999999999999999999999998 9999    5888888877655444444433222222112222222234


Q ss_pred             ccchhHHHHHHHHHHHHHhcCCCceeeeeccchhhHHHHHHHHHHHHhhc-CchhHHHhHHHHHHHHHHHHHHhh
Q 046439          128 TAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPFESLIFTSIIV-PQASFLGHLSGIIVGYAIAWGLIH  201 (269)
Q Consensus       128 ~~vGaSg~v~gl~~~~~~~~p~~~~~l~~~~~i~~~~~~~~~l~~~~~~~-~~~s~~aHl~G~l~G~l~~~~~~~  201 (269)
                      +-.|..|.+-|+++++-...|+..+...-...+..+..|...++.+.+.. -.-...+.+.-+.+|...+|.|++
T Consensus       141 ~i~G~~gilaGilVa~kQllpd~~il~~~~~r~~~~~lP~~~l~~~~il~i~~f~~f~~l~s~~~g~~~sWtYLR  215 (326)
T KOG2890|consen  141 PIHGTTGILAGILVAWKQLLPDTIILELKSGRFLYAHLPLLVLFLSLILSIITFLVFASLPSITFGVLVSWTYLR  215 (326)
T ss_pred             EeccchHHHHHHHHHHHHHcCceeEEeccchhhhhhhCCHHHHHHHHHHHHHHHHHhhhhHHHHHhhhhhhhhhe
Confidence            57899999999999999999998654332222221122322222111110 012344455555566666666554

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	269
2xov_A	181	Rhomboid protease GLPG; membrane protein, hydrolas	3e-17
2nr9_A	196	Protein GLPG homolog; intramembrane peptidase, rho	2e-13

>2xov_A Rhomboid protease GLPG; membrane protein, hydrolase, intramembrane protease; HET: BNG; 1.65A {Escherichia coli} PDB: 2ic8_A* 2nrf_A 2xtu_A* 2irv_A* 3b45_A* 2o7l_A* 2xow_A* 3txt_A* 2xtv_A* 3b44_A* Length = 181

 Score = 76.2 bits (188), Expect = 3e-17
 Identities = 41/189 (21%), Positives = 73/189 (38%), Gaps = 21/189 (11%)

Query: 13  PATSCIIGICSVIWFY--IQKKNIGYSHVGLSYETAVDGHHWRIITSAFSHISVLHLVFN 70
           P T  ++  C V++    I         +   ++  +    WR  T A  H S++H++FN
Sbjct: 5   PVTWVMMIACVVVFIAMQILGDQEVMLWLAWPFDPTLKFEFWRYFTHALMHFSLMHILFN 64

Query: 71  MSALWSLG-VVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQRFKLEYFRRVTA 129
           +   W LG  VE+     LG+   +  TL+  +LSG +                F     
Sbjct: 65  LLWWWYLGGAVEKR----LGSGKLIVITLISALLSGYVQQ-------------KFSGPWF 107

Query: 130 VGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPFESLI-FTSIIVPQASFLGHLSG 188
            G S VV+  M  + ++               I FA    +  +  +     +   H++G
Sbjct: 108 GGLSGVVYALMGYVWLRGERDPQSGIYLQRGLIIFALIWIVAGWFDLFGMSMANGAHIAG 167

Query: 189 IIVGYAIAW 197
           + VG A+A+
Sbjct: 168 LAVGLAMAF 176

>2nr9_A Protein GLPG homolog; intramembrane peptidase, rhomboid protease, membrane protein; HET: PA6 PQE; 2.20A {Haemophilus influenzae} SCOP: f.51.1.1 PDB: 3odj_A Length = 196

 Score = 66.6 bits (163), Expect = 2e-13
 Identities = 36/193 (18%), Positives = 66/193 (34%), Gaps = 21/193 (10%)

Query: 13  PATSCIIGICSVIWFYIQKKNIGYSHVGLSY--ETAVDGHHWRIITSAFSHISVLHLVFN 70
             T  +  +C +I+   Q          + Y      D   WR I+    H+S LH++FN
Sbjct: 10  KITLILTALCVLIYIAQQLGFEDDIMYLMHYPAYEEQDSEVWRYISHTLVHLSNLHILFN 69

Query: 71  MSALWSLG-VVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQRFKLEYFRRVTA 129
           +S  +  G ++E+      G+   L   +V   ++G +               Y      
Sbjct: 70  LSWFFIFGGMIERT----FGSVKLLMLYVVASAITGYVQN-------------YVSGPAF 112

Query: 130 VGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPFESLIFTSIIVPQA-SFLGHLSG 188
            G S VV+  +  + ++   +                  +L F S +         H+SG
Sbjct: 113 FGLSGVVYAVLGYVFIRDKLNHHLFDLPEGFFTMLLVGIALGFISPLFGVEMGNAAHISG 172

Query: 189 IIVGYAIAWGLIH 201
           +IVG    +    
Sbjct: 173 LIVGLIWGFIDSK 185

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	269
2xov_A	181	Rhomboid protease GLPG; membrane protein, hydrolas	99.96
2nr9_A	196	Protein GLPG homolog; intramembrane peptidase, rho	99.95
2juj_A	56	E3 ubiquitin-protein ligase CBL; alpha helix, UBA	91.34
2ooa_A	52	E3 ubiquitin-protein ligase CBL-B; alpha-helical d	83.38
2d9s_A	53	CBL E3 ubiquitin protein ligase; UBA domain, dimer	83.06
2oo9_A	46	E3 ubiquitin-protein ligase CBL; alpha-helical dom	82.39

>2xov_A Rhomboid protease GLPG; membrane protein, hydrolase, intramembrane protease; HET: BNG; 1.65A {Escherichia coli} PDB: 2ic8_A* 2nrf_A 2xtu_A* 2irv_A* 3b45_A* 2o7l_A* 2xow_A* 3txt_A* 2xtv_A* 3b44_A*

Probab=99.96  E-value=7.7e-29  Score=207.50  Aligned_cols=171  Identities=23%  Similarity=0.339  Sum_probs=130.2

Q ss_pred             cCccHHHHHHHHHHHHHHHHhhcccc--ccccccchhhhccccchHHhHhHhhcCChhHHHHHHHHHHHHhH-hhhhccC
Q 046439           10 MEKPATSCIIGICSVIWFYIQKKNIG--YSHVGLSYETAVDGHHWRIITSAFSHISVLHLVFNMSALWSLGV-VEQLGDV   86 (269)
Q Consensus        10 ~~~pvt~~li~i~v~vfll~~~~~~~--~~~~~l~~~~~~~~q~wrllT~~F~H~~~~Hll~Nm~~L~~~G~-lE~~~~~   86 (269)
                      +++|+|+.++++|+++|+++...+..  .+.++++++...++|+||++|++|+|.|+.|+++||+.++.+|+ +|+.   
T Consensus         2 ~~~pvt~~li~~~v~vf~~~~~~~~~~~~~~~~~~p~~~~~~~~wrl~T~~f~H~~~~Hl~~Nm~~l~~~g~~~E~~---   78 (181)
T 2xov_A            2 RAGPVTWVMMIACVVVFIAMQILGDQEVMLWLAWPFDPTLKFEFWRYFTHALMHFSLMHILFNLLWWWYLGGAVEKR---   78 (181)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHSSCCSGGGTTCTTHHHHGGGCCCSHHHHHHHHHHHHHHHHHHHHH---
T ss_pred             CCCcHHHHHHHHHHHHHHHHHHhCcHHHHHhhcCChhhccCCCCHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHH---
Confidence            46889999999999999988765421  24556666655569999999999999999999999999999997 9999   


Q ss_pred             CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccchhHHHHHHHHHHHHH---hcCCCceeeeeccchhhH
Q 046439           87 GLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSV---KQPSSKLDLFGFLSLPIS  163 (269)
Q Consensus        87 ~~G~~~~l~~yl~~~l~~~~~~~l~~~ll~~~~~~~~~~~~~~vGaSg~v~gl~~~~~~---~~p~~~~~l~~~~~i~~~  163 (269)
                       +|++|++.+|+.+++.+++.+.+..            +. ..+||||+++|++++...   ..|+.+..    ++.+..
T Consensus        79 -~G~~~fl~~yl~~~i~~~l~~~~~~------------~~-~~vGaSGai~gl~g~~~~~~~~~p~~~~~----l~~~~~  140 (181)
T 2xov_A           79 -LGSGKLIVITLISALLSGYVQQKFS------------GP-WFGGLSGVVYALMGYVWLRGERDPQSGIY----LQRGLI  140 (181)
T ss_dssp             -HCHHHHHHHHHHHHHHHHHHHHHHH------------CS-CCCCSHHHHHHHHHHHHHHHHHCGGGSCC----CCHHHH
T ss_pred             -hChHHHHHHHHHHHHHHHHHHHHhc------------CC-CceeHHHHHHHHHHHHHHHHhhCcCceee----eHHHHH
Confidence             7999999999999999988764321            12 389999999999987643   56665542    133333


Q ss_pred             HHHHHHHHHHHh--hcCchhHHHhHHHHHHHHHHHHHHhh
Q 046439          164 FAPFESLIFTSI--IVPQASFLGHLSGIIVGYAIAWGLIH  201 (269)
Q Consensus       164 ~~~~~~l~~~~~--~~~~~s~~aHl~G~l~G~l~~~~~~~  201 (269)
                      ....+.++....  ..+++|+.||++|+++|++++..+.|
T Consensus       141 ~~~~~~~~~~~~~~~~~~v~~~aHlgG~l~G~l~~~~~~~  180 (181)
T 2xov_A          141 IFALIWIVAGWFDLFGMSMANGAHIAGLAVGLAMAFVDSL  180 (181)
T ss_dssp             HHHHHHHHHHHTTSSCCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHhc
Confidence            222222222211  23589999999999999999988765

>2nr9_A Protein GLPG homolog; intramembrane peptidase, rhomboid protease, membrane protein; HET: PA6 PQE; 2.20A {Haemophilus influenzae} SCOP: f.51.1.1 PDB: 3odj_A

Probab=99.95  E-value=2.2e-28  Score=207.24  Aligned_cols=172  Identities=19%  Similarity=0.245  Sum_probs=126.9

Q ss_pred             cCccHHHHHHHHHHHHHHHHhhcccc--ccccccchhhhccccchHHhHhHhhcCChhHHHHHHHHHHHHhH-hhhhccC
Q 046439           10 MEKPATSCIIGICSVIWFYIQKKNIG--YSHVGLSYETAVDGHHWRIITSAFSHISVLHLVFNMSALWSLGV-VEQLGDV   86 (269)
Q Consensus        10 ~~~pvt~~li~i~v~vfll~~~~~~~--~~~~~l~~~~~~~~q~wrllT~~F~H~~~~Hll~Nm~~L~~~G~-lE~~~~~   86 (269)
                      +++|+|..++++|+++|+++...+..  .+.++++++.+..+|+||++|++|+|.|+.|+++||+.++.+|+ +|+.   
T Consensus         7 ~~~pvt~~li~~~v~vfll~~~~~~~~~~~~~~~~p~~~~~~~~wrl~T~~flH~~~~Hl~~Nm~~l~~~G~~lE~~---   83 (196)
T 2nr9_A            7 QQGKITLILTALCVLIYIAQQLGFEDDIMYLMHYPAYEEQDSEVWRYISHTLVHLSNLHILFNLSWFFIFGGMIERT---   83 (196)
T ss_dssp             TSCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHSCCCSGGGGGCTTHHHHGGGCCSSHHHHHHHHHHHHHHHHHHHHH---
T ss_pred             ccccHHHHHHHHHHHHHHHHHHcCcHHHHHhhcCCHhhcccCCcHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHH---
Confidence            35789999999999999987765321  24566666666669999999999999999999999999999997 9999   


Q ss_pred             CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccchhHHHHHHHHHHHHHh---cCCCceeeeeccchhhH
Q 046439           87 GLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVK---QPSSKLDLFGFLSLPIS  163 (269)
Q Consensus        87 ~~G~~~~l~~yl~~~l~~~~~~~l~~~ll~~~~~~~~~~~~~~vGaSg~v~gl~~~~~~~---~p~~~~~l~~~~~i~~~  163 (269)
                       +|++|++.+|+.+++.+++.+.+..            +. ..+||||++||++++....   .|+. .    ..+.+..
T Consensus        84 -~G~~~~l~~yl~~~~~~~l~~~~~~------------~~-~~vGaSGai~gl~g~~~~~~~~~~~~-~----~~~~~~~  144 (196)
T 2nr9_A           84 -FGSVKLLMLYVVASAITGYVQNYVS------------GP-AFFGLSGVVYAVLGYVFIRDKLNHHL-F----DLPEGFF  144 (196)
T ss_dssp             -HCHHHHHHHHHHHHHHHHHHHHHHH------------CS-CCCCSHHHHHHHHHHHHHHHHSSTTS-C----CCCCSST
T ss_pred             -HChHHHHHHHHHHHHHHHHHHHHhc------------CC-CeeeHHHHHHHHHHHHHHHHHhcchh-h----cchHHHH
Confidence             7999999999999999988764321            12 3899999999999876542   3332 1    1122221


Q ss_pred             HHHHHHHHHH--Hh-hcCchhHHHhHHHHHHHHHHHHHHhhcc
Q 046439          164 FAPFESLIFT--SI-IVPQASFLGHLSGIIVGYAIAWGLIHGM  203 (269)
Q Consensus       164 ~~~~~~l~~~--~~-~~~~~s~~aHl~G~l~G~l~~~~~~~~~  203 (269)
                      ....+.+++.  .. ..+++|+.||++|+++|++++..+.+..
T Consensus       145 ~~~~~~~~~~~~~~~~~~~v~~~aHlgG~l~G~l~~~~~~~~~  187 (196)
T 2nr9_A          145 TMLLVGIALGFISPLFGVEMGNAAHISGLIVGLIWGFIDSKLR  187 (196)
T ss_dssp             TTTTTTTTHHHHSCSSCCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccCCCccHHHHHHHHHHHHHHHHHHHhcc
Confidence            1110111111  11 2347999999999999999999886654

>2juj_A E3 ubiquitin-protein ligase CBL; alpha helix, UBA domain, calcium, cytoplasm, metal- binding, phosphorylation, proto-oncogene, SH2 domain; NMR {Homo sapiens}

Probab=91.34  E-value=0.0053  Score=39.82  Aligned_cols=28  Identities=11%  Similarity=0.049  Sum_probs=23.1

Q ss_pred             CCCccccccc---ccCcccccccccccCccC
Q 046439          241 DPSLPSVRFI---GNGRTLQMSAIPVEGVEI  268 (269)
Q Consensus       241 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~  268 (269)
                      +|..++|..+   |++|+.++|||.++||||
T Consensus         5 ~p~e~~Ia~L~smGfsr~da~~AL~ia~Ndv   35 (56)
T 2juj_A            5 PQLSSEIENLMSQGYSYQDIQKALVIAQNNI   35 (56)
T ss_dssp             HHHHHHHHHHHTTTCCHHHHHHHHHHTTTCS
T ss_pred             CCChHHHHHHHHcCCCHHHHHHHHHHhcccH
Confidence            3455566655   999999999999999997

>2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A

Probab=83.38  E-value=0.057  Score=34.70  Aligned_cols=27  Identities=7%  Similarity=0.022  Sum_probs=22.0

Q ss_pred             CCccccccc---ccCcccccccccccCccC
Q 046439          242 PSLPSVRFI---GNGRTLQMSAIPVEGVEI  268 (269)
Q Consensus       242 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~  268 (269)
                      |..++|..+   |++|..+++||.+++|||
T Consensus        10 ~~~~~Ia~Lm~mGFsr~~ai~AL~~a~nnv   39 (52)
T 2ooa_A           10 NVDAKIAKLMGEGYAFEEVKRALEIAQNNV   39 (52)
T ss_dssp             -CHHHHHHHHHTTCCHHHHHHHHHHTTTCH
T ss_pred             ChHHHHHHHHHcCCCHHHHHHHHHHhCCCH
Confidence            333666666   999999999999999986

>2d9s_A CBL E3 ubiquitin protein ligase; UBA domain, dimer, protein binding, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=83.06  E-value=0.066  Score=34.56  Aligned_cols=28  Identities=11%  Similarity=0.052  Sum_probs=22.9

Q ss_pred             CCCccccccc---ccCcccccccccccCccC
Q 046439          241 DPSLPSVRFI---GNGRTLQMSAIPVEGVEI  268 (269)
Q Consensus       241 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~  268 (269)
                      +|...+|+.+   |++|..+++||.+++|||
T Consensus         7 ~~~e~~I~~L~~lGF~r~~ai~AL~~a~nnv   37 (53)
T 2d9s_A            7 GQLSSEIERLMSQGYSYQDIQKALVIAHNNI   37 (53)
T ss_dssp             SCSHHHHHHHHHHTCCHHHHHHHHHHTTTCH
T ss_pred             cchHHHHHHHHHcCCCHHHHHHHHHHhcCCH
Confidence            4445556666   999999999999999986

>2oo9_A E3 ubiquitin-protein ligase CBL; alpha-helical domain, homodimer; 2.10A {Homo sapiens}

Probab=82.39  E-value=0.1  Score=32.48  Aligned_cols=18  Identities=17%  Similarity=0.098  Sum_probs=17.5

Q ss_pred             ccCcccccccccccCccC
Q 046439          251 GNGRTLQMSAIPVEGVEI  268 (269)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~  268 (269)
                      |++++.++|||..+||||
T Consensus        15 Gf~~~~~~rAL~ia~Nni   32 (46)
T 2oo9_A           15 GYSYQDIQKALVIAQNNI   32 (46)
T ss_dssp             TBCHHHHHHHHHHTTTCH
T ss_pred             CCCHHHHHHHHHHhhccH
Confidence            999999999999999997

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	269
d3b45a1	180	f.51.1.1 (A:91-270) GlpG {Escherichia coli [TaxId:	6e-07
d2nr9a1	189	f.51.1.1 (A:4-192) GlpG homolog HI0618 {Haemophilu	2e-05

>d3b45a1 f.51.1.1 (A:91-270) GlpG {Escherichia coli [TaxId: 562]} Length = 180

class: Membrane and cell surface proteins and peptides
fold: Rhomboid-like
superfamily: Rhomboid-like
family: Rhomboid-like
domain: GlpG
species: Escherichia coli [TaxId: 562]

 Score = 46.2 bits (109), Expect = 6e-07
 Identities = 38/188 (20%), Positives = 71/188 (37%), Gaps = 19/188 (10%)

Query: 13  PATSCIIGICSVIWFYIQKKNIG--YSHVGLSYETAVDGHHWRIITSAFSHISVLHLVFN 70
           P T  ++  C V++  +Q          +   ++  +    WR  T A  H S++H++FN
Sbjct: 5   PVTWVMMIACVVVFIAMQILGDQEVMLWLAWPFDPTLKFEFWRYFTHALMHFSLMHILFN 64

Query: 71  MSALWSLGVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQRFKLEYFRRVTAV 130
           +   W LG   +      G+   +  TL+  +LSG +                F      
Sbjct: 65  LLWWWYLGGAVEKRL---GSGKLIVITLISALLSGYVQQ-------------KFSGPWFG 108

Query: 131 GYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPFESLI-FTSIIVPQASFLGHLSGI 189
           G S VV+  M  + ++               I FA    +  +  +     +   H++G+
Sbjct: 109 GLSGVVYALMGYVWLRGERDPQSGIYLQRGLIIFALIWIVAGWFDLFGMSMANGAHIAGL 168

Query: 190 IVGYAIAW 197
            VG A+A+
Sbjct: 169 AVGLAMAF 176

>d2nr9a1 f.51.1.1 (A:4-192) GlpG homolog HI0618 {Haemophilus influenzae [TaxId: 727]} Length = 189

class: Membrane and cell surface proteins and peptides
fold: Rhomboid-like
superfamily: Rhomboid-like
family: Rhomboid-like
domain: GlpG homolog HI0618
species: Haemophilus influenzae [TaxId: 727]

 Score = 42.5 bits (99), Expect = 2e-05
 Identities = 30/188 (15%), Positives = 59/188 (31%), Gaps = 19/188 (10%)

Query: 13  PATSCIIGICSVIWFYIQ--KKNIGYSHVGLSYETAVDGHHWRIITSAFSHISVLHLVFN 70
             T  +  +C +I+   Q   ++     +        D   WR I+    H+S LH++FN
Sbjct: 7   KITLILTALCVLIYIAQQLGFEDDIMYLMHYPAYEEQDSEVWRYISHTLVHLSNLHILFN 66

Query: 71  MSALWSLGVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQRFKLEYFRRVTAV 130
           +S  +  G + +     +           +       V G                    
Sbjct: 67  LSWFFIFGGMIERTFGSVKLLMLYVVASAITGYVQNYVSGPAF----------------F 110

Query: 131 GYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPFESLIFT-SIIVPQASFLGHLSGI 189
           G S VV+  +  + ++   +                  +L F   +   +     H+SG+
Sbjct: 111 GLSGVVYAVLGYVFIRDKLNHHLFDLPEGFFTMLLVGIALGFISPLFGVEMGNAAHISGL 170

Query: 190 IVGYAIAW 197
           IVG    +
Sbjct: 171 IVGLIWGF 178

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	269
d2nr9a1	189	GlpG homolog HI0618 {Haemophilus influenzae [TaxId	99.95
d3b45a1	180	GlpG {Escherichia coli [TaxId: 562]}	99.95

>d2nr9a1 f.51.1.1 (A:4-192) GlpG homolog HI0618 {Haemophilus influenzae [TaxId: 727]}

class: Membrane and cell surface proteins and peptides
fold: Rhomboid-like
superfamily: Rhomboid-like
family: Rhomboid-like
domain: GlpG homolog HI0618
species: Haemophilus influenzae [TaxId: 727]

Probab=99.95  E-value=8.1e-28  Score=200.46  Aligned_cols=179  Identities=18%  Similarity=0.214  Sum_probs=128.7

Q ss_pred             cCccHHHHHHHHHHHHHHHHhhcccc-cccc-ccchhhhccccchHHhHhHhhcCChhHHHHHHHHHHHHhH-hhhhccC
Q 046439           10 MEKPATSCIIGICSVIWFYIQKKNIG-YSHV-GLSYETAVDGHHWRIITSAFSHISVLHLVFNMSALWSLGV-VEQLGDV   86 (269)
Q Consensus        10 ~~~pvt~~li~i~v~vfll~~~~~~~-~~~~-~l~~~~~~~~q~wrllT~~F~H~~~~Hll~Nm~~L~~~G~-lE~~~~~   86 (269)
                      ++.|+|..++++|+++|++....... .... ..++....++|+||++|++|+|.|+.|+++||+.++.+|. +|+.   
T Consensus         4 ~~~pvt~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~wrl~T~~f~H~~~~Hl~~N~~~l~~~g~~~E~~---   80 (189)
T d2nr9a1           4 QQGKITLILTALCVLIYIAQQLGFEDDIMYLMHYPAYEEQDSEVWRYISHTLVHLSNLHILFNLSWFFIFGGMIERT---   80 (189)
T ss_dssp             TSCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHSCCCSGGGGGCTTHHHHGGGCCSSHHHHHHHHHHHHHHHHHHHHH---
T ss_pred             CcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHccccccccCchHHhHHHHHhcCCHHHHHHHHHHHHHHHHHHHHH---
Confidence            46799999999999999987664322 1222 2333444459999999999999999999999999999997 9999   


Q ss_pred             CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccchhHHHHHHHHHHHHHhcCCCceeeeeccchhhHHHH
Q 046439           87 GLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAP  166 (269)
Q Consensus        87 ~~G~~~~l~~yl~~~l~~~~~~~l~~~ll~~~~~~~~~~~~~~vGaSg~v~gl~~~~~~~~p~~~~~l~~~~~i~~~~~~  166 (269)
                       .|+++++.+|+.++++++++....             .....+|+||+++|++++.....+..+.............+.
T Consensus        81 -~G~~~~~~~~~~~~~~~~l~~~~~-------------~~~~~vGaSG~v~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (189)
T d2nr9a1          81 -FGSVKLLMLYVVASAITGYVQNYV-------------SGPAFFGLSGVVYAVLGYVFIRDKLNHHLFDLPEGFFTMLLV  146 (189)
T ss_dssp             -HCHHHHHHHHHHHHHHHHHHHHHH-------------HCSCCCCSHHHHHHHHHHHHHHHHSSTTSCCCCCSSTTTTTT
T ss_pred             -HHHHhhhhHHHHHHHHHHHHHHhc-------------CCCCcccchHHHHHHHHHHHHHHHHhhhHhccHHHHHHHHHH
Confidence             799999999999998888765432             134679999999999988776665544322111111111111


Q ss_pred             HHHHH-HHHhhcCchhHHHhHHHHHHHHHHHHHHhhccch
Q 046439          167 FESLI-FTSIIVPQASFLGHLSGIIVGYAIAWGLIHGMNN  205 (269)
Q Consensus       167 ~~~l~-~~~~~~~~~s~~aHl~G~l~G~l~~~~~~~~~~~  205 (269)
                      ++.+. ......+++++.||++|+++|+++++...|.+++
T Consensus       147 ~~~~~~~~~~~~~~v~~~aHl~G~l~G~~~g~~~~~~~k~  186 (189)
T d2nr9a1         147 GIALGFISPLFGVEMGNAAHISGLIVGLIWGFIDSKLRKN  186 (189)
T ss_dssp             TTTHHHHSCSSCCTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHccccc
Confidence            11111 1222346799999999999999999988765543

>d3b45a1 f.51.1.1 (A:91-270) GlpG {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: Rhomboid-like
superfamily: Rhomboid-like
family: Rhomboid-like
domain: GlpG
species: Escherichia coli [TaxId: 562]

Probab=99.95  E-value=2.7e-27  Score=195.65  Aligned_cols=171  Identities=22%  Similarity=0.315  Sum_probs=128.4

Q ss_pred             cCccHHHHHHHHHHHHHHHHhhcccc--ccccccchhhhccccchHHhHhHhhcCChhHHHHHHHHHHHHhH-hhhhccC
Q 046439           10 MEKPATSCIIGICSVIWFYIQKKNIG--YSHVGLSYETAVDGHHWRIITSAFSHISVLHLVFNMSALWSLGV-VEQLGDV   86 (269)
Q Consensus        10 ~~~pvt~~li~i~v~vfll~~~~~~~--~~~~~l~~~~~~~~q~wrllT~~F~H~~~~Hll~Nm~~L~~~G~-lE~~~~~   86 (269)
                      |..|+|..++++|+++|++.......  .+....+.+...++|+||++|++|+|.|+.|+++||+.++.+|+ +|+.   
T Consensus         2 r~~pvT~~li~i~~~vf~~~~~~~~~~~~~~~~~~~~~~~~g~~wrl~T~~f~H~~~~Hl~~N~~~l~~~G~~lE~~---   78 (180)
T d3b45a1           2 RAGPVTWVMMIACVVVFIAMQILGDQEVMLWLAWPFDPTLKFEFWRYFTHALMHFSLMHILFNLLWWWYLGGAVEKR---   78 (180)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHSSCCSGGGTTCGGGGTGGGGCCCSHHHHHHHHHHHHHHHHHHHHH---
T ss_pred             CCCcHHHHHHHHHHHHHHHHHHhCcHHHHHHHcCCCcccccCchHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHh---
Confidence            56899999999999999987654321  23445556666679999999999999999999999999999997 9999   


Q ss_pred             CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccchhHHHHHHHHHHHHHhcCCCceeeeeccchhhHHHH
Q 046439           87 GLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAP  166 (269)
Q Consensus        87 ~~G~~~~l~~yl~~~l~~~~~~~l~~~ll~~~~~~~~~~~~~~vGaSg~v~gl~~~~~~~~p~~~~~l~~~~~i~~~~~~  166 (269)
                       .|++|++.+|+.+++.+++...+..             +....|+||+++|+++......++.+...... +.......
T Consensus        79 -~G~~~~~~~~~~~~~~g~l~~~~~~-------------~~~~~G~sg~i~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~  143 (180)
T d3b45a1          79 -LGSGKLIVITLISALLSGYVQQKFS-------------GPWFGGLSGVVYALMGYVWLRGERDPQSGIYL-QRGLIIFA  143 (180)
T ss_dssp             -HCHHHHHHHHHHHHHHHHHHHHHHH-------------CSCCCCSHHHHHHHHHHHHHHHHHCGGGSCCC-CHHHHHHH
T ss_pred             -ccchhheeeeeHHHHHHHHHHHHHh-------------ccccccccchHHHHHHHHHHHhhhcchhHHhh-HHHHHHHH
Confidence             7999999999999999998765421             34678999999999998777655544332221 11111111


Q ss_pred             HHHH--HHHHhhcCchhHHHhHHHHHHHHHHHHH
Q 046439          167 FESL--IFTSIIVPQASFLGHLSGIIVGYAIAWG  198 (269)
Q Consensus       167 ~~~l--~~~~~~~~~~s~~aHl~G~l~G~l~~~~  198 (269)
                      ...+  .......+++++.||++|+++|+++++.
T Consensus       144 ~~~~~~~~~~~~~~~v~~~aHlgG~l~G~~~~~~  177 (180)
T d3b45a1         144 LIWIVAGWFDLFGMSMANGAHIAGLAVGLAMAFV  177 (180)
T ss_dssp             HHHHHHHHTTSSCCSSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHH
Confidence            1111  2222345679999999999999999875