Citrus Sinensis ID: 046450

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390--
Protein Sequence
MFSLICKTLIEKPGSIDLKISYARNLKTIIPSVNSISKPSDERSPTVSFLTHSCGLSLEKAISVSKLVKIQDTEKPNSSIQLLTSRGFTKPQIATLISKYPRILSHDPEKVLKPKIEYLESLGISGPDLAKILCPYPELLSRSLENHIIPTFDFLKGVFQANGNLVYALKQSIRVVNSDIQKRVVPNMNTLRAHGVPEPHIARLIMLQPPSLVLRAELFKNVVDVIKEMGFEPSSKSFILAVRSMAMSSKATWQRKKEILISFGWSEDEFRMVFKRQPLFMMASAKKIRKLMDFFVNKIGLEPSDIARYPNLLIGSLEKKVLPRWSVLQVLMSKNLLKKDVNVSLALFVTKEVFERRFVTSYMHEPEVMTAYQGGLGVQAVGGGVGAELSQT
Secondary Structure (PSIPRED)
cccccccccccccccccccHHHHHcccccccccccccccccccccHHHHHHHcccccHHHHHcccccccccccccHHHHHHHHHHccccHHHHHHHHHHccccEEccccccHHHHHHHHHHcccccHHHHHHHccccccccccccccHHHHHHHHHHHccccHHHHHHHHHcccccccccccccccHHHHHHHcccccHHHHHHHHcccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHccccHHHHHHHHHHHHHHcccHHHHHHHHHHccccccccHHHHHHHHHHHHHHHccccHHHHccccccccccccccHHHHHHHHHHHHcccccccccccccccccHHHHHHHHccccccccHHHHHHHccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccEEEcccccccccEEEEEEccccccEcccccccccccccccccHHHHHHHHccccHHHHHHHHccccccccccHHHHHHHHHHccccHHHHHHHHHHcccEEEccHHcccHHHHHHHHHccccHHHHHHHHHHcHHHHHHcHHHccHHHHHHHHHHcccHHHHHHHHHHcccHccccHHHHcHHHHHHHHHccccHHHHHHHHHHcccEEcccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHccHHHHHHHHHHHHHccccHHHHHHHHHHccHHHHccHHHHHHHHHHHHHHccccHHHHHHccHEEEccHHHHccHHHHHHHHHHHcccccccccHHHHEcccHHHHHHHHcccHcccHHHHHHHHcccccccccccHHHHHccc
Coil and Loop (DISEMBL)
MFSLICKTliekpgsidlKISYARNLKTiipsvnsiskpsdersptvsflthSCGLSLEKAISVSKLVKiqdtekpnssiqlltsrgftkpQIATLIskyprilshdpekvlkPKIEYLEslgisgpdlakilcpypellsrslenhiiptfdFLKGVFQANGNLVYALKQSIRVVNSDIQkrvvpnmntlrahgvpephiarlimlqppslvLRAELFKNVVDVIKEmgfepsskSFILAVRSMAMSSKATWQRKKEILISFGWSEDEFRMvfkrqplfMMASAKKIRKLMDFFVNkiglepsdiarypnlligslekkvlPRWSVLQVLMSKNLLKKDVNVSLALFVTKEVFERRFVTsymhepevmtayqgglgvqavgggvgaelsqt
Flexible Loop (DISEMBL)
MFSLICKTliekpgsidlKISYARNLKTiipsvnsiskpsderspTVSFLTHSCGLSLEKAISVSKLVKiqdtekpnssiqlltsrgftkpQIATLIskyprilshdpekVLKPKIEYLESLGISGPDLAKILCPYPELLSRSLENHIIPTFDFLKGVFQANGNLVYALKQSIRVVNSDIQKRVVPNMNTLRAHGVPEPHIARLIMLQPPSLVLRAELFKNVVDVIKEMGFEPSSKSFILAVRSMAMSSKATWQRKKEILisfgwsedeFRMVFKRQPLFMMASAKKIRKLMDFFVNKIGlepsdiarypNLLIGSLEKKVLPRWSVLQVLMSknllkkdvnVSLALFVTKEVFERRFVTSYMHEPEVMTAYQGGLGVQAVGGGVGAELSQT
Low Complexity Region (SEG)
MFSLICKTLIEKPGSIDLKISYARNLKTIIPSVNSISKPSDERSPTVSFLTHSCGLSLEKAISVSKLVKIQDTEKPNSSIQLLTSRGFTKPQIATLISKYPRILSHDPEKVLKPKIEYLESLGISGPDLAKILCPYPELLSRSLENHIIPTFDFLKGVFQANGNLVYALKQSIRVVNSDIQKRVVPNMNTLRAHGVPEPHIARLIMLQPPSLVLRAELFKNVVDVIKEMGFEPSSKSFILAVRSMAMSSKATWQRKKEILISFGWSEDEFRMVFKRQPLFMMASAKKIRKLMDFFVNKIGLEPSDIARYPNLLIGSLEKKVLPRWSVLQVLMSKNLLKKDVNVSLALFVTKEVFERRFVTSYMHEPEVMTAYqgglgvqavgggvgaELSQT
Disordered region (IsUnstruct)
***LICKTLIEKPGSIDLKISYARNLKTIIPS**************VSFLTHSCGLSLEKAISVSKLVKI*********IQLLTSRGFTKPQIATLISKYPRILSHDPEKVLKPKIEYLESLGISGPDLAKILCPYPELLSRSLENHIIPTFDFLKGVFQANGNLVYALKQSIRVVNSDIQKRVVPNMNTLRAHGVPEPHIARLIMLQPPSLVLRAELFKNVVDVIKEMGFEPSSKSFILAVRSMAMSSKATWQRKKEILISFGWSEDEFRMVFKRQPLFMMASAKKIRKLMDFFVNKIGLEPSDIARYPNLLIGSLEKKVLPRWSVLQVLMSKNLLKKDVNVSLALFVTKEVFERRFVTSYMHEPEVMTAYQGGLGVQAVGGG********
Disordered Region (DISOPRED)
*FSLI**********************TII**********DERSPTVSFLTHSCGLSLEKAISVSKLVKIQDTEKPNSSIQLLTSRGFTKPQIATLISKYPRILSHDPEKVLKPKIEYLESLGISGPDLAKILCPYPELLSRSLENHIIPTFDFLKGVFQANGNLVYALKQSIRVVNSDIQKRVVPNMNTLRAHGVPEPHIARLIMLQPPSLVLRAELFKNVVDVIKEMGFEPSSKSFILAVRSMAMSSKATWQRKKEILISFGWSEDEFRMVFKRQPLFMMASAKKIRKLMDFFVNKIGLEPSDIARYPNLLIGSLEKKVLPRWSVLQVLMSKNLLKKDVNVSLALFVTKEVFERRFVTSYMHEPEVMTAYQGGLGVQAVGGGVGAEL***
Disordered Region (DISEMBL)
MFSLICKTLIEKPGSIDLKISYARNLKTIIPSVNS*************FLTHSCGLSLEKAISVSKLVKIQDTEKPNSSIQLLTSRGFTKPQIATLISKYPRILSHDPEKVLKPKIEYLESLGISGPDLAKILCPYPELLSRSLENHIIPTFDFLKGVFQANGNLVYALKQSIRVVNSDIQKRVVPNMNTLRAHGVPEPHIARLIMLQPPSLVLRAELFKNVVDVIKEMGFEPSSKSFILAVRSM********QRKKEILISFGWSEDEFRMVFKRQPLFMMASAKKIRKLMDFFVNKIGLEPSDIARYPNLLIGSLEKKVLPRWSVLQVLMSKNLLKKDVNVSLALFVTKEVFERRFVTSYMHEPEVMTAYQGGLGVQAVGGGVGAELSQT
Disordered Region (DISPRO)
*FSLICKTLIEKPGSIDLKISYARNLKTIIPS**********RSPTVSFLTHSCGLSLEKAISVSKLVKIQDTEKPNSSIQLLTSRGFTKPQIATLISKYPRILSHDPEKVLKPKIEYLESLGISGPDLAKILCPYPELLSRSLENHIIPTFDFLKGVFQANGNLVYALKQSIRVVNSDIQKRVVPNMNTLRAHGVPEPHIARLIMLQPPSLVLRAELFKNVVDVIKEMGFEPSSKSFILAVRSMAMSSKATWQRKKEILISFGWSEDEFRMVFKRQPLFMMASAKKIRKLMDFFVNKIGLEPSDIARYPNLLIGSLEKKVLPRWSVLQVLMSKNLLKKDVNVSLALFVTKEVFERRFVTSYMHEPEVMTAYQGGLGVQAVGGGVGA*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MFSLICKTLIEKPGSIDLKISYARNLKTIIPSVNSISKPSDERSPTVSFLTHSCGLSLEKAISVSKLVKIQDTEKPNSSIQLLTSRGFTKPQIATLISKYPRILSHDPEKVLKPKIEYLESLGISGPDLAKILCPYPELLSRSLENHIIPTFDFLKGVFQANGNLVYALKQSIRVVNSDIQKRVVPNMNTLRAHGVPEPHIARLIMLQPPSLVLRAELFKNVVDVIKEMGFEPSSKSFILAVRSMAMSSKATWQRKKEILISFGWSEDEFRMVFKRQPLFMMASAKKIRKLMDFFVNKIGLEPSDIARYPNLLIGSLEKKVLPRWSVLQVLMSKNLLKKDVNVSLALFVTKEVFERRFVTSYMHEPEVMTAYQGGLGVQAVGGGVGAELSQT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	392
255593266	377	conserved hypothetical protein [Ricinus	0.951	0.989	0.510	1e-102
147823268	396	hypothetical protein VITISV_017396 [Viti	0.849	0.840	0.425	2e-72
225432338	399	PREDICTED: uncharacterized protein LOC10	0.867	0.852	0.419	2e-72
225432336	389	PREDICTED: uncharacterized protein LOC10	0.846	0.853	0.423	2e-72
225432334	397	PREDICTED: uncharacterized protein LOC10	0.849	0.838	0.422	5e-72
147823269	719	hypothetical protein VITISV_017397 [Viti	0.836	0.456	0.419	5e-72
225432332	396	PREDICTED: uncharacterized protein LOC10	0.849	0.840	0.413	6e-72
296086611	408	unnamed protein product [Vitis vinifera]	0.867	0.833	0.406	1e-70
225436741	462	PREDICTED: uncharacterized protein LOC10	0.867	0.735	0.406	2e-70
147817763	2634	hypothetical protein VITISV_028996 [Viti	0.867	0.129	0.406	6e-70

>gi|255593266|ref|XP_002535825.1| conserved hypothetical protein [Ricinus communis] gi|223521814|gb|EEF26558.1| conserved hypothetical protein [Ricinus communis]

 Score =  378 bits (971), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 193/378 (51%), Positives = 275/378 (72%), Gaps = 5/378 (1%)

Query: 1   MFSLICKTLIEKPGSIDLKISYARNLKTIIPSVNSISKPSDERSPTVSFLTHSCGLSLEK 60
           MF+   K LI     IDLK  Y R ++T+ PS NS S   D++S TVS+LT+ CGLSL+K
Sbjct: 1   MFNFASKLLINY-RIIDLKQCYIRCIQTL-PSSNSASISKDQQSLTVSYLTNLCGLSLQK 58

Query: 61  AISVSKLVKIQDTEKPNSSIQLLTSRGFTKPQIATLISKYPRILSHDPEKVLKPKIEYLE 120
           A+S +K VKI+ TEKP+  +QLL + GFTK QI +LISK+P I+  D EK LKPKI++L+
Sbjct: 59  AVSATKYVKIERTEKPDMVLQLLRAHGFTKSQITSLISKHPSIILADSEKTLKPKIQFLD 118

Query: 121 SLGISGPDLAKILCPYPELLSRSLENHIIPTFDFLKGVFQANGNLVYALKQSIRVVNSDI 180
           SLG++ PD+ KILC   ++L  SL+N I+PT D+L+G+ + +  +V+ALK+  R +    
Sbjct: 119 SLGVAKPDIPKILCTDAQILVSSLKNRILPTIDYLRGILETDEKVVWALKRCPRALRHGT 178

Query: 181 QKRVVPNMNTLRAHGVPEPHIARLIMLQPPSLVLRAELFKNVVDVIKEMGFEPSSKSFIL 240
              +V N+ TLRAHGVPEP+I  L +L+P +L+LR +LF  VV  +KEMGFEP++KSFI 
Sbjct: 179 DT-MVSNVGTLRAHGVPEPNIRSLFILEPLTLLLRVDLFNQVVQEVKEMGFEPANKSFIY 237

Query: 241 AVRSMAMSSKATWQRKKEILISFGWSEDEFRMVFKRQPLFMMASAKKIRKLMDFFVNKIG 300
           A+RSM++ S++ WQRKKE+L+SFGWSE EF + FK QP FM+ S KK++ LM+FF+ K+ 
Sbjct: 238 ALRSMSVMSRSHWQRKKEVLMSFGWSESEFLLAFKLQPFFMLTSEKKMKVLMEFFLTKLS 297

Query: 301 LEPSDIARYPNLLIGSLEKKVLPRWSVLQVLMSKNLLKKDVNVSLALFVTKEVFERRFVT 360
           LEPSDI + PNL + SLEK+++PR + L++LMSK L+ K+V+    L ++K+ FE+RF+T
Sbjct: 298 LEPSDIVKCPNLFLVSLEKRIIPRCTALELLMSKGLIDKNVSFIWELNMSKKQFEKRFIT 357

Query: 361 SYMHE-PEVMTAYQGGLG 377
            +  + PE++ AY G LG
Sbjct: 358 CFKQDSPELIKAY-GILG 374

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147823268|emb|CAN77552.1| hypothetical protein VITISV_017396 [Vitis vinifera]

 Score =  279 bits (713), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 142/334 (42%), Positives = 213/334 (63%), Gaps = 1/334 (0%)

Query: 46  TVSFLTHSCGLSLEKAISVSKLVKIQDTEKPNSSIQLLTSRGFTKPQIATLISKYPRILS 105
           TVS+L +SCGLS + A S SK V  +  +KPNS + L  S GF+K Q + +  K P++L 
Sbjct: 56  TVSYLINSCGLSHKDARSASKYVHFESPDKPNSVLALFNSHGFSKTQTSKIXKKEPQLLL 115

Query: 106 HDPEKVLKPKIEYLESLGISGPDLAKILCPYPELLSRSLENHIIPTFDFLKGVFQANGNL 165
            DP+K L PK+++  S G S PD+AKI+   P +L RSLEN IIP+F+F K   Q++   
Sbjct: 116 SDPDKTLLPKLQFFYSKGASWPDIAKIVVCSPSILKRSLENQIIPSFNFFKDXLQSDKMA 175

Query: 166 VYALKQSIRVVNSDIQKRVVPNMNTLRAHGVPEPHIARLIMLQPPSLVLRAELFKNVVDV 225
           +  +K+  R++  D+   V  NMN L+  GVP+ +IA L+M QP + ++R  LF+  ++ 
Sbjct: 176 ITVVKRFSRILLFDLHTYVASNMNALQEFGVPKSNIAGLLMNQPMAFMVRPNLFRENLEE 235

Query: 226 IKEMGFEPSSKSFILAVRSMAMSSKATWQRKKEILISFGWSEDEFRMVFKRQPLFMMASA 285
           +K MGF PS   F++A++++    K +W+RK +I   +GWSE+E R+ F + P  M+ S 
Sbjct: 236 VKXMGFNPSQMKFVIAIQAIRAGGKXSWERKIDIYKRWGWSEEEIRLAFTKSPWCMIYSE 295

Query: 286 KKIRKLMDFFVNKIGLEPSDIARYPNLLIGSLEKKVLPRWSVLQVLMSKNLLKKDVNVSL 345
            KI   MDFFVNK+G E S IAR P L+  SLEK+++PR+SV+QVL+SK L+ KD ++S 
Sbjct: 296 DKIMATMDFFVNKMGRESSSIARRPQLISPSLEKRIIPRYSVVQVLLSKGLINKDFSLSA 355

Query: 346 ALFVTKEVFERRFVTSYMHE-PEVMTAYQGGLGV 378
               T+ +F  +FV  Y  E P+++  YQ  L +
Sbjct: 356 VFQSTEIMFLHKFVDVYKEEAPQLLNLYQEKLNL 389

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225432338|ref|XP_002274845.1| PREDICTED: uncharacterized protein LOC100252802 [Vitis vinifera]

 Score =  279 bits (713), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 143/341 (41%), Positives = 218/341 (63%), Gaps = 1/341 (0%)

Query: 34  NSISKPSDERSPTVSFLTHSCGLSLEKAISVSKLVKIQDTEKPNSSIQLLTSRGFTKPQI 93
           +SIS     +S TVS+L  SCGLS + A+S SK    +  +KPNS +    S GF+K QI
Sbjct: 40  SSISPSGKSQSFTVSYLIDSCGLSHKDALSASKFFSFETPDKPNSVLAFFNSHGFSKSQI 99

Query: 94  ATLISKYPRILSHDPEKVLKPKIEYLESLGISGPDLAKILCPYPELLSRSLENHIIPTFD 153
           + ++   PR+L+ DP+K L PK+++  S G S PD+AKI+   P +L RSLEN IIP+F+
Sbjct: 100 SKIVKSLPRLLASDPDKTLLPKLQFFYSKGASRPDVAKIVVSTPGILYRSLENQIIPSFN 159

Query: 154 FLKGVFQANGNLVYALKQSIRVVNSDIQKRVVPNMNTLRAHGVPEPHIARLIMLQPPSLV 213
           F K   Q++   +  +K+  R++  D+   V  N+N L+  GVP+ +IA L+M +P + +
Sbjct: 160 FFKDFLQSDEMAITVIKRFSRILLFDLHTYVASNINALQEFGVPKSNIAGLLMNRPMAFM 219

Query: 214 LRAELFKNVVDVIKEMGFEPSSKSFILAVRSMAMSSKATWQRKKEILISFGWSEDEFRMV 273
           +R  LF+  ++ +K+MGF PS   F++A+ +M    K+TW+RK +    +GWSE+E R+ 
Sbjct: 220 VRPNLFRENLEEVKKMGFNPSQMKFVIAIHAMRAMGKSTWERKIDAYKRWGWSEEEIRLA 279

Query: 274 FKRQPLFMMASAKKIRKLMDFFVNKIGLEPSDIARYPNLLIGSLEKKVLPRWSVLQVLMS 333
           F + P  M  S  KI   MDFFVNK+G E S IAR P L+  SLEK+++PR+SV+QVL+S
Sbjct: 280 FIKLPRCMTHSEDKIMATMDFFVNKMGRESSLIARRPLLIPLSLEKRIIPRYSVIQVLLS 339

Query: 334 KNLLKKDVNVSLALFVTKEVFERRFVTSYMHE-PEVMTAYQ 373
           K L+K D ++ +    T+++F R+FV  +  E P++M  YQ
Sbjct: 340 KGLIKNDTSLVVLFESTEKMFLRKFVNGFKEEAPQLMKLYQ 380

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225432336|ref|XP_002274817.1| PREDICTED: uncharacterized protein LOC100257952 [Vitis vinifera]

 Score =  279 bits (713), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 142/335 (42%), Positives = 218/335 (65%), Gaps = 3/335 (0%)

Query: 42  ERSP--TVSFLTHSCGLSLEKAISVSKLVKIQDTEKPNSSIQLLTSRGFTKPQIATLISK 99
           ERS   TVS+L  SCGLS + A+S SKL++ +  EKP+S +    S GF+K Q + ++  
Sbjct: 50  ERSESFTVSYLIDSCGLSHKDALSASKLLRFETPEKPDSVLAFFNSHGFSKSQTSKIVKS 109

Query: 100 YPRILSHDPEKVLKPKIEYLESLGISGPDLAKILCPYPELLSRSLENHIIPTFDFLKGVF 159
            PR+L+ DP+K L PK+++  S G S PD+AKI+   P +L RSLEN IIP+F+FLK   
Sbjct: 110 LPRLLASDPDKTLLPKLQFFYSKGASKPDVAKIVVSTPGILKRSLENQIIPSFNFLKDFL 169

Query: 160 QANGNLVYALKQSIRVVNSDIQKRVVPNMNTLRAHGVPEPHIARLIMLQPPSLVLRAELF 219
           Q++   +  +K+  R++  D+   V  NMN L+  GVP+ +IA L+M +P + ++   LF
Sbjct: 170 QSDEMAITVVKRFSRILLFDLHTYVASNMNALQEFGVPKSNIAGLLMYRPMAFMVNPNLF 229

Query: 220 KNVVDVIKEMGFEPSSKSFILAVRSMAMSSKATWQRKKEILISFGWSEDEFRMVFKRQPL 279
           +  ++ +K+MGF PS   F+LA+++M    ++ W+RK +I   +GWSE+E R+ F + P 
Sbjct: 230 RKNLEEVKKMGFNPSQMKFVLAIQAMRAGGESCWERKIDIYKKWGWSEEEIRLAFTKSPW 289

Query: 280 FMMASAKKIRKLMDFFVNKIGLEPSDIARYPNLLIGSLEKKVLPRWSVLQVLMSKNLLKK 339
            M+ S  KI   MDFFVNK+G E S IA  P L+  SLEK+++PR+SV+QVL+SK L+ K
Sbjct: 290 CMIYSEDKIMAKMDFFVNKMGRESSLIAHRPFLIGLSLEKRIIPRYSVVQVLLSKGLINK 349

Query: 340 DVNVSLALFVTKEVFERRFVTSYMHE-PEVMTAYQ 373
           D+++ +    T++ F  RFV +Y  E P+++  YQ
Sbjct: 350 DISLVVLFESTEKTFLERFVNAYKEEAPQLIKLYQ 384

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225432334|ref|XP_002276352.1| PREDICTED: uncharacterized protein LOC100251002 [Vitis vinifera]

 Score =  277 bits (709), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 141/334 (42%), Positives = 215/334 (64%), Gaps = 1/334 (0%)

Query: 46  TVSFLTHSCGLSLEKAISVSKLVKIQDTEKPNSSIQLLTSRGFTKPQIATLISKYPRILS 105
           TVS+L +SCGLS + A S SK V  +  +KPNS + L  S GF+K Q + ++ K P++L 
Sbjct: 57  TVSYLINSCGLSHKDARSASKYVHFETPDKPNSVLALFNSHGFSKTQTSKIVKKEPQLLL 116

Query: 106 HDPEKVLKPKIEYLESLGISGPDLAKILCPYPELLSRSLENHIIPTFDFLKGVFQANGNL 165
            DP+K L PK+++  S G S PD+AKI+   P +L RSLEN IIP+F+F K   Q++   
Sbjct: 117 SDPDKTLLPKLQFFYSKGASWPDIAKIVVCSPSILKRSLENQIIPSFNFFKDFLQSDKMA 176

Query: 166 VYALKQSIRVVNSDIQKRVVPNMNTLRAHGVPEPHIARLIMLQPPSLVLRAELFKNVVDV 225
           +  +K+  R++  D+   V  NMN L+  GVP+ +IA L+M QP + ++R  LF+  ++ 
Sbjct: 177 ITVVKRFSRILLFDLHTYVASNMNALQEFGVPKSNIAGLLMNQPMAFMVRPNLFRENLEE 236

Query: 226 IKEMGFEPSSKSFILAVRSMAMSSKATWQRKKEILISFGWSEDEFRMVFKRQPLFMMASA 285
           +K+MG  PS   F++A++++    K++W+RK +I   +GWSE+E R+ F + P  M+ S 
Sbjct: 237 VKKMGSNPSQMKFVIAIQAIRAGGKSSWERKIDIYKRWGWSEEEIRLAFTKSPWCMIYSE 296

Query: 286 KKIRKLMDFFVNKIGLEPSDIARYPNLLIGSLEKKVLPRWSVLQVLMSKNLLKKDVNVSL 345
            KI   MDFFVNK+G E S IAR P L+  SLEK+++PR+SV+QVL+SK L+ KD ++S 
Sbjct: 297 DKIMATMDFFVNKMGRESSSIARRPQLISPSLEKRIIPRYSVVQVLLSKGLISKDFSLSA 356

Query: 346 ALFVTKEVFERRFVTSYMHE-PEVMTAYQGGLGV 378
               T+ +F  +FV  Y  E P+++  YQ  L +
Sbjct: 357 VFQSTEIMFLHKFVDVYKEEAPQLLNLYQEKLNL 390

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147823269|emb|CAN77553.1| hypothetical protein VITISV_017397 [Vitis vinifera]

 Score =  277 bits (709), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 138/329 (41%), Positives = 213/329 (64%), Gaps = 1/329 (0%)

Query: 46  TVSFLTHSCGLSLEKAISVSKLVKIQDTEKPNSSIQLLTSRGFTKPQIATLISKYPRILS 105
           TVS+L +SCGLS + A+S SK +  +  EKPNS +    S GF+K Q + ++   P++L 
Sbjct: 53  TVSYLVNSCGLSHKDALSASKYIHFEAPEKPNSVLAFFNSHGFSKTQTSKIVKTEPQLLL 112

Query: 106 HDPEKVLKPKIEYLESLGISGPDLAKILCPYPELLSRSLENHIIPTFDFLKGVFQANGNL 165
            DP+K L PK+++  S G S PD+AKI+   P ++ RSLEN +IP+++F K   Q++   
Sbjct: 113 SDPDKTLLPKLQFFYSKGTSKPDVAKIVASSPAIMRRSLENQVIPSYNFFKDFLQSDKMA 172

Query: 166 VYALKQSIRVVNSDIQKRVVPNMNTLRAHGVPEPHIARLIMLQPPSLVLRAELFKNVVDV 225
           +  +K+  R++  DI   V  NMN L+  GVP+ +IA L+  QP + ++R  LF+  ++ 
Sbjct: 173 ITVVKRFSRILLFDIHTYVASNMNALQEFGVPKSNIAGLLRNQPMAFMVRPNLFRENLEE 232

Query: 226 IKEMGFEPSSKSFILAVRSMAMSSKATWQRKKEILISFGWSEDEFRMVFKRQPLFMMASA 285
           +K+MGF PS   F++AV+++    K++W+RK +I  S+GWSE+E R+ F + P  M+ S 
Sbjct: 233 VKKMGFNPSQMKFVIAVQAIRAGGKSSWERKIDIYKSWGWSEEEIRLAFTKSPWCMIYSE 292

Query: 286 KKIRKLMDFFVNKIGLEPSDIARYPNLLIGSLEKKVLPRWSVLQVLMSKNLLKKDVNVSL 345
            KI   MDFFVNK+G E S IAR P L+  SLEK+++PR+SV+QVL+SK L+ KD ++  
Sbjct: 293 DKIMTTMDFFVNKMGRESSLIARRPVLISHSLEKRIIPRYSVVQVLLSKGLIDKDFSLPT 352

Query: 346 ALFVTKEVFERRFVTSYMHE-PEVMTAYQ 373
               T+++F  +FV  Y  E P++M  YQ
Sbjct: 353 VFQSTEKMFLHKFVNVYKEEAPQLMKLYQ 381

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225432332|ref|XP_002276324.1| PREDICTED: uncharacterized protein LOC100256384 [Vitis vinifera]

 Score =  277 bits (709), Expect = 6e-72,   Method: Compositional matrix adjust.
 Identities = 138/334 (41%), Positives = 215/334 (64%), Gaps = 1/334 (0%)

Query: 46  TVSFLTHSCGLSLEKAISVSKLVKIQDTEKPNSSIQLLTSRGFTKPQIATLISKYPRILS 105
           TVS+L +SCGLS + A+S SK +  +  EKPNS +    S GF+K Q + ++   P++L 
Sbjct: 56  TVSYLVNSCGLSHKDALSASKYIHFEAPEKPNSVLAFFNSHGFSKTQTSKIVKTEPQLLL 115

Query: 106 HDPEKVLKPKIEYLESLGISGPDLAKILCPYPELLSRSLENHIIPTFDFLKGVFQANGNL 165
            DP+K L PK+++  S G S PD+AKI+   P ++ RSLEN +IP+++F K   Q++   
Sbjct: 116 SDPDKTLLPKLQFFYSKGASKPDVAKIVASSPAIMRRSLENQVIPSYNFFKDFLQSDKMA 175

Query: 166 VYALKQSIRVVNSDIQKRVVPNMNTLRAHGVPEPHIARLIMLQPPSLVLRAELFKNVVDV 225
           +  +K+  R++  DI   V  NMN L+  GVP+ +IA L+  QP + ++R  LF+  ++ 
Sbjct: 176 ITVVKRFSRILLFDIHTYVASNMNALQEFGVPKSNIAGLLRNQPMAFMVRPNLFRENLEE 235

Query: 226 IKEMGFEPSSKSFILAVRSMAMSSKATWQRKKEILISFGWSEDEFRMVFKRQPLFMMASA 285
           +K+MGF PS   F++AV+++    K++W+RK +I  S+GWSE+E R+ F + P  M+ S 
Sbjct: 236 VKKMGFNPSQMKFVIAVQAIRAGGKSSWERKIDIYKSWGWSEEEIRLAFTKSPWCMIYSE 295

Query: 286 KKIRKLMDFFVNKIGLEPSDIARYPNLLIGSLEKKVLPRWSVLQVLMSKNLLKKDVNVSL 345
            KI   MDFFVNK+G E S IAR P L+  SLEK+++PR+SV+QVL+SK L+ KD ++  
Sbjct: 296 DKIMTTMDFFVNKMGRESSLIARRPVLISHSLEKRIIPRYSVVQVLLSKGLIDKDFSLPT 355

Query: 346 ALFVTKEVFERRFVTSYMHE-PEVMTAYQGGLGV 378
               T+++F  +FV  Y  E P++M  YQ  + +
Sbjct: 356 VFQSTEKMFLHKFVNVYKEEAPQLMKLYQEKINL 389

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296086611|emb|CBI32246.3| unnamed protein product [Vitis vinifera]

 Score =  273 bits (697), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 139/342 (40%), Positives = 217/342 (63%), Gaps = 2/342 (0%)

Query: 42  ERSPTVSFLTHSCGLSLEKAISVSKLVKIQDTEKPNSSIQLLTSRGFTKPQIATLISKYP 101
           + S TVS+L +SCGLS E A+S S+ ++ +  E+ +S + LL + G T   I+ ++SKYP
Sbjct: 46  QHSFTVSYLMNSCGLSPESALSASRKIQFETPERADSVLALLRNYGCTNTHISKIVSKYP 105

Query: 102 RILSHDPEKVLKPKIEYLESLGISGPDLAKILCPYPELLSRSLENHIIPTFDFLKGVFQA 161
            +L+ +PEK L PK+E+  S+G SGPDLA I+   P +L RSLENH+IP ++FLK V   
Sbjct: 106 LLLTANPEKTLLPKLEFFRSVGFSGPDLAGIIVAKPSILKRSLENHVIPNYNFLKSVGMI 165

Query: 162 NGNLVYALKQSIRVVNSDIQKRVVPNMNTLRAHGVPEPHIARLIMLQPPSLVLRAELFKN 221
           N N+  AL+++  +    +Q   VPN+ TL+  GVP  +I+  +   P ++    E F  
Sbjct: 166 NENIARALRRTYWLTGQSVQNTNVPNIATLKEIGVPMSNISFFLTCHPSAVSQNKEKFST 225

Query: 222 VVDVIKEMGFEPSSKSFILAVRSMAMSSKATWQRKKEILISFGWSEDEFRMVFKRQPLFM 281
            V  + EMGF+P   +F+ AVR +    ++ W+ K E+   +G+++DE  ++ +  PL M
Sbjct: 226 NVKKVIEMGFDPLRVTFLKAVRLICGMGESMWEHKMEVYRRWGFTDDEIMLMIRLDPLCM 285

Query: 282 MASAKKIRKLMDFFVNKIGLEPSDIARYPNLLIGSLEKKVLPRWSVLQVLMSKNLLKKDV 341
            +S +KI  +MDF VNK+G EP+ I RYP + + SLEKK++P  SV++VL  K L+KKD+
Sbjct: 286 TSSERKIMSVMDFLVNKMGWEPAAIGRYPTVFLRSLEKKIIPWCSVVKVLQIKGLVKKDL 345

Query: 342 NVSLALFVTKEVFERRFVTSYMHE-PEVMTAYQGGLGVQAVG 382
           ++S  L  +K+ F  RFV  Y H+ PE++  YQG +G+  +G
Sbjct: 346 SLSF-LGSSKKNFFNRFVVKYEHDVPELLNVYQGKIGILELG 386

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225436741|ref|XP_002269551.1| PREDICTED: uncharacterized protein LOC100261332 [Vitis vinifera]

 Score =  272 bits (696), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 139/342 (40%), Positives = 217/342 (63%), Gaps = 2/342 (0%)

Query: 42  ERSPTVSFLTHSCGLSLEKAISVSKLVKIQDTEKPNSSIQLLTSRGFTKPQIATLISKYP 101
           + S TVS+L +SCGLS E A+S S+ ++ +  E+ +S + LL + G T   I+ ++SKYP
Sbjct: 46  QHSFTVSYLMNSCGLSPESALSASRKIQFETPERADSVLALLRNYGCTNTHISKIVSKYP 105

Query: 102 RILSHDPEKVLKPKIEYLESLGISGPDLAKILCPYPELLSRSLENHIIPTFDFLKGVFQA 161
            +L+ +PEK L PK+E+  S+G SGPDLA I+   P +L RSLENH+IP ++FLK V   
Sbjct: 106 LLLTANPEKTLLPKLEFFRSVGFSGPDLAGIIVAKPSILKRSLENHVIPNYNFLKSVGMI 165

Query: 162 NGNLVYALKQSIRVVNSDIQKRVVPNMNTLRAHGVPEPHIARLIMLQPPSLVLRAELFKN 221
           N N+  AL+++  +    +Q   VPN+ TL+  GVP  +I+  +   P ++    E F  
Sbjct: 166 NENIARALRRTYWLTGQSVQNTNVPNIATLKEIGVPMSNISFFLTCHPSAVSQNKEKFST 225

Query: 222 VVDVIKEMGFEPSSKSFILAVRSMAMSSKATWQRKKEILISFGWSEDEFRMVFKRQPLFM 281
            V  + EMGF+P   +F+ AVR +    ++ W+ K E+   +G+++DE  ++ +  PL M
Sbjct: 226 NVKKVIEMGFDPLRVTFLKAVRLICGMGESMWEHKMEVYRRWGFTDDEIMLMIRLDPLCM 285

Query: 282 MASAKKIRKLMDFFVNKIGLEPSDIARYPNLLIGSLEKKVLPRWSVLQVLMSKNLLKKDV 341
            +S +KI  +MDF VNK+G EP+ I RYP + + SLEKK++P  SV++VL  K L+KKD+
Sbjct: 286 TSSERKIMSVMDFLVNKMGWEPAAIGRYPTVFLRSLEKKIIPWCSVVKVLQIKGLVKKDL 345

Query: 342 NVSLALFVTKEVFERRFVTSYMHE-PEVMTAYQGGLGVQAVG 382
           ++S  L  +K+ F  RFV  Y H+ PE++  YQG +G+  +G
Sbjct: 346 SLSF-LGSSKKNFFNRFVVKYEHDVPELLNVYQGKIGILELG 386

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147817763|emb|CAN68941.1| hypothetical protein VITISV_028996 [Vitis vinifera]

 Score =  271 bits (692), Expect = 6e-70,   Method: Compositional matrix adjust.
 Identities = 139/342 (40%), Positives = 216/342 (63%), Gaps = 2/342 (0%)

Query: 42   ERSPTVSFLTHSCGLSLEKAISVSKLVKIQDTEKPNSSIQLLTSRGFTKPQIATLISKYP 101
            + S TVS+L +SCGLS E A+S S+ ++ +  E+ +S + LL + G T   I+ ++SKYP
Sbjct: 1793 QHSFTVSYLMNSCGLSPESALSASRKIQFETPERADSVLALLRNYGCTNTHISKIVSKYP 1852

Query: 102  RILSHDPEKVLKPKIEYLESLGISGPDLAKILCPYPELLSRSLENHIIPTFDFLKGVFQA 161
             +L+ +PEK L PK+E+  S+G SGPDLA I+   P +L RSLENH+IP ++FLK V   
Sbjct: 1853 LLLTANPEKTLLPKLEFFRSVGFSGPDLAGIIVAKPSILKRSLENHVIPNYNFLKSVGMI 1912

Query: 162  NGNLVYALKQSIRVVNSDIQKRVVPNMNTLRAHGVPEPHIARLIMLQPPSLVLRAELFKN 221
            N N+  AL+++  +    +Q   VPN+ TL+  GVP  +I+  +   P ++    E F  
Sbjct: 1913 NENIARALRRTYWLTGQSVQTTNVPNIATLKEIGVPMSNISFFLTCHPSAVSQNKEKFST 1972

Query: 222  VVDVIKEMGFEPSSKSFILAVRSMAMSSKATWQRKKEILISFGWSEDEFRMVFKRQPLFM 281
             V  + EMGF+P   +F+ AVR +    ++ W+ K E+   +G+++DE  ++    PL M
Sbjct: 1973 NVKKVIEMGFDPLRVTFLKAVRLICGMGESMWEHKMEVYRRWGFTDDEIMLMIXLDPLCM 2032

Query: 282  MASAKKIRKLMDFFVNKIGLEPSDIARYPNLLIGSLEKKVLPRWSVLQVLMSKNLLKKDV 341
             +S +KI  +MDF VNK+G EP+ I RYP + + SLEKK++P  SV++VL  K L+KKD+
Sbjct: 2033 TSSERKIMSVMDFLVNKMGWEPAAIGRYPTVFLRSLEKKIIPWCSVVKVLQIKXLVKKDL 2092

Query: 342  NVSLALFVTKEVFERRFVTSYMHE-PEVMTAYQGGLGVQAVG 382
            ++S  L  +K+ F  RFV  Y H+ PE++  YQG +G+  +G
Sbjct: 2093 SLSF-LGSSKKNFFNRFVVKYEHDVPELLNVYQGKIGILELG 2133

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	392
TAIR|locus:2142763	405	AT5G07900 "AT5G07900" [Arabido	0.880	0.851	0.359	7.5e-57
TAIR|locus:2199612	390	AT1G21150 "AT1G21150" [Arabido	0.852	0.856	0.356	1.1e-50
TAIR|locus:2177734	391	AT5G64950 "AT5G64950" [Arabido	0.862	0.864	0.292	5.7e-36
TAIR|locus:2018042	462	AT1G62110 "AT1G62110" [Arabido	0.688	0.584	0.316	3.3e-31
TAIR|locus:2102827	450	AT3G46950 "AT3G46950" [Arabido	0.790	0.688	0.312	3.8e-30
TAIR|locus:2036843	457	AT1G61960 "AT1G61960" [Arabido	0.686	0.588	0.313	1e-29
TAIR|locus:2036858	418	AT1G61970 "AT1G61970" [Arabido	0.658	0.617	0.300	7.1e-29
TAIR|locus:1006230704	461	AT1G62085 "AT1G62085" [Arabido	0.691	0.587	0.307	9.1e-29
TAIR|locus:2036878	414	AT1G61990 "AT1G61990" [Arabido	0.780	0.739	0.293	3.1e-28
TAIR|locus:2172798	457	AT5G23930 "AT5G23930" [Arabido	0.739	0.634	0.288	4.6e-27

TAIR|locus:2142763 AT5G07900 "AT5G07900" [Arabidopsis thaliana (taxid:3702)]

 Score = 585 (211.0 bits), Expect = 7.5e-57, P = 7.5e-57
 Identities = 125/348 (35%), Positives = 207/348 (59%)

Query:    28 TIIPSVNSISKPSDER-SPTVSFLTHSCGLSLEKAISVSKLVKIQDTEKPNSSIQLLTSR 86
             T + S N       ++ S T+++L  SCGLS + A   S+ + +   E+PN+ + LL   
Sbjct:    52 TTLTSKNPKDDEQQQKLSFTLNYLIDSCGLSPDSATVASRKLLLDSPERPNTVLNLLRDH 111

Query:    87 GFTKPQIATLISKYPRILSHDPEKVLKPKIEYLESLGISGPDLAKILCPYPELLSRSLEN 146
             GFT  QI++L+ K P +L  + E VL PK+ +  S+G+S   LA+ L   P +L+RSL N
Sbjct:   112 GFTTAQISSLVKKRPVLLLANAESVLLPKLSFFLSIGVSKSLLARTLASDPTILTRSLVN 171

Query:   147 HIIPTFDFLKGVFQANGNLVYALKQSIRVVNSDIQKRVVPNMNTLRAHGVPEPHIARLIM 206
              +IP+++FLK V  ++  +V AL+++  V   D  K +VPN+N +   GVPE  I  L+ 
Sbjct:   172 QLIPSYNFLKSVLDSDEKIVAALRRTTWVFLEDHTKNLVPNINYMAETGVPEKCIKLLLT 231

Query:   207 LQPPSLVLRAELFKNVVDVIKEMGFEPSSKSFILAVRSMA-MSSKATWQRKKEILISFGW 265
               P +++ +   F+ +    +EMGF P   +F+LA+ +++   +K+ W +  E+   +GW
Sbjct:   232 HFPEAVMQKNHEFQAIAKQAQEMGFNPQKSTFVLAIHALSGKGNKSIWDKCFEVYQRWGW 291

Query:   266 SEDEFRMVFKRQPLFMMASAKKIRKLMDFFVNKIGLEPSDIARYPNLLIGSLEKKVLPRW 325
             SED+    FK+ P  MM S +KI + M++FVN++ + P  IA+ P +L  SLEK+++PR 
Sbjct:   292 SEDDIMCAFKKHPHCMMLSERKINRTMEYFVNEMNMAPRSIAQCPVVLFFSLEKRIIPRC 351

Query:   326 SVLQVLMSKNLLKKDVNVSLALFVTKEVFERRFVTSYMHE-PEVMTAY 372
             SV +VL+S  L+K+D +++  L   ++VF  + V  Y  E PE+M  Y
Sbjct:   352 SVTKVLVSNGLVKEDWSLTSLLVPVEKVFLEKLVIKYEEELPELMNLY 399

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0016020 "membrane" evidence=IDA

TAIR|locus:2199612 AT1G21150 "AT1G21150" [Arabidopsis thaliana (taxid:3702)]

 Score = 527 (190.6 bits), Expect = 1.1e-50, P = 1.1e-50
 Identities = 120/337 (35%), Positives = 188/337 (55%)

Query:    38 KPSDERSPTVSFLTHSCGLSLEKAISVSKLVKIQDTEKPNSSIQLLTSRGFTKPQIATLI 97
             KP  E S TVS+L  SCGLSLE A S S+ VK+  ++KP+S + L    GFT  QI ++I
Sbjct:    51 KPCLE-SFTVSYLVDSCGLSLESAKSNSRFVKLVSSKKPDSVLALFKDHGFTNDQITSVI 109

Query:    98 SKYPRILSHDPEKVLKPKIEYLESLGISGPDLAKILCPYPELLSRSLENHIIPTFDFLKG 157
               +PR+LS  PE V+ PK+ +  S+G S  D AK++   P++LS SL   +IP +D LK 
Sbjct:   110 KSFPRVLSLSPEDVISPKLMFFSSIGFSTSDTAKMISSSPKMLSYSLHKRLIPCYDSLKS 169

Query:   158 VFQANGNLVYALKQSIRVVNSDIQKRVVPNMNTLRAHGVPEPHIARLIMLQPPSLVLRAE 217
             +     ++V  LK+ IR  +  I   V   ++  R  GVP+  I  L+   P +   R  
Sbjct:   170 ILVEEESVVKCLKRGIRCFSLKITHCVSLRVSICRELGVPDKSIKWLVQASPFTFFSRER 229

Query:   218 LFKNVVDVIKEMGFEPSSKSFILAVRSMAMSSKATWQRKKEILISFGWSEDEFRMVFKRQ 277
              F  V++ +   GF+P    F+ A+ +   +S++  +RK ++   FGWS+++F     R 
Sbjct:   230 RFNEVLNRVCSYGFDPKKAGFVHAMVAFDCTSESAMERKFKLFQCFGWSKEDFVAAIMRF 289

Query:   278 PLFMMASAKKIRKLMDFFVNKIGLEPSDIARYPNLLIGSLEKKVLPRWSVLQVLMSKNLL 337
             P  +  S +KI   +++ VN IGL+  DI   P +L  S+EK++ PR  V+ +L+SK L+
Sbjct:   290 PNCVTVSDEKIMYTLEYLVNNIGLQARDIVARPVVLSLSMEKRIKPRNQVISLLLSKGLV 349

Query:   338 KK-DVNVSLALFVTKEVFERRFVTSYMHE-PEVMTAY 372
             KK D+N    L +    F  +FV  Y  E P+++  +
Sbjct:   350 KKEDINYFTILKLKSSEFMDKFVLKYQDEMPQLVQPF 386

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2177734 AT5G64950 "AT5G64950" [Arabidopsis thaliana (taxid:3702)]

 Score = 388 (141.6 bits), Expect = 5.7e-36, P = 5.7e-36
 Identities = 102/349 (29%), Positives = 187/349 (53%)

Query:    34 NSISKPSDERSPT-VSFLTHSCGLSLEKAISVS-KLVKIQDTEKPNSSIQLLTSRGFTKP 91
             +S + P+   +P  V FL  + G     AI+++ +   ++  E+P S IQ+L S  F+  
Sbjct:    28 SSNATPASISNPAFVEFLRDN-GFQKPLAIAIAMRYPNLKSLEQPRSVIQMLKSYSFSDT 86

Query:    92 QIATLISKYPRILSHDPEKVLKPKIEYLESLGISGPDLAKILCPYPELLSRSLENHIIPT 151
             QI   I  +PR++ ++ EK+L+PK+ + + +G +G  L K +     ++  SL   +IPT
Sbjct:    87 QIQKSIRVHPRMMFYNVEKILEPKLRFFKDIGFTGSGLGKFVSQNSSVVGVSLVKKLIPT 146

Query:   152 FDFLKGVFQA-NGNLVYALKQ-SIRVVNSDIQKRVVPNMNTLRAHGVPEPHIARLIMLQP 209
              + LK +    + +L   L +    +++ D    ++PN++ L   G+    +A L+  QP
Sbjct:   147 VEILKSIVAPKHEDLPVILSRCGWLLLSRDPNLFLLPNISYLETCGIVGSQLASLLRRQP 206

Query:   210 PSLVLRAELFKNVVDVIKEMGFEPSSKSFILAVRSMAMSSKATWQRKKEILISFGWSEDE 269
                 L  E  +  V    ++GF  +S+  + AV S++  S+ T+ RK ++ ++ G+SEDE
Sbjct:   207 RIFNLSEEKLRGYVSRALDLGFTLNSRMLVHAVISLSSLSEKTFDRKVKLFMANGFSEDE 266

Query:   270 FRMVFKRQPLFMMASAKKIRKLMDFFVNKIGLEPSDIARYPNLLIGSLEKKVLPRWSVLQ 329
                + +R P  +  S  K+    +F++ ++GLE   +A+ P +L  +LEK+V+PR  VLQ
Sbjct:   267 ITDIIRRSPGLIRCSEDKLTLGFEFYLKRMGLEREALAKRPCVLSYNLEKRVIPRLKVLQ 326

Query:   330 VLMSKNLL----KKDVNVSLALFVTKEVFERRFVTSYMHE--PEVMTAY 372
             +L  K LL    KK  N+   + +T+E F  ++V  +  E   E++ AY
Sbjct:   327 ILREKGLLLKEEKKKKNMVGIVEMTEEAFLEKYVVRFGDEIAEELLVAY 375

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2018042 AT1G62110 "AT1G62110" [Arabidopsis thaliana (taxid:3702)]

 Score = 343 (125.8 bits), Expect = 3.3e-31, P = 3.3e-31
 Identities = 90/284 (31%), Positives = 157/284 (55%)

Query:    46 TVSFLTHSCGLSLEKAISVSKLVKIQDTEKPNSSIQLLTSRGFTKPQIATLISKYPRILS 105
             TVS+L  S GL+ + A S+SK V   +   P+  + L  S GFT  QI+++I+ YPR+L 
Sbjct:    54 TVSYLVDSLGLATKLAESISKKVSFVNKGNPDLVLSLFRSYGFTNSQISSIITDYPRLLL 113

Query:   106 HDPEKVLKPKIEYLESLGISGPDLAKILCPYPELLSRSLENHIIPTFDFLKGVFQANGNL 165
              D EK L  K+++LES G S P+L +I+   P++L       +   +DF+K + +A+ + 
Sbjct:   114 IDAEKSLDIKLQFLESRGASSPELTQIVSTVPKILGMKEGKSLGRYYDFVKEIIEADKSS 173

Query:   166 VY-ALKQSIRVVNSDIQKRVVPNMNTLRAHGVPEPHIARLIM--LQPPSLVLRAELFKNV 222
              Y  L Q +   N    K  + N++ LR  GVP+  +  L++   QP   V   E F+  
Sbjct:   174 KYETLCQPLPEANRQGNK--IRNVSVLRDLGVPQKLLFSLLISDAQP---VCGKENFEES 228

Query:   223 VDVIKEMGFEPSSKSFILAVRSMAMSSKATWQRKKEILISFGWSEDEFRMVFKRQPLFMM 282
             +  + EMGF+P++  F+ A+R++   +  T + +  +   FG++ ++   +FK+ P F+ 
Sbjct:   229 LKKVVEMGFDPTTSKFVQALRAVYRFTDKTIEERVNVYKGFGFAVEDVWAMFKKCPYFLN 288

Query:   283 ASAKKIRKLMDFFVNKIGLEPSDIA----RYPNLLIGSLEKKVL 322
             +S KKI + ++  + K GL   ++     +YP   IG+ E+K+L
Sbjct:   289 SSEKKIGQTIET-LKKCGLLEDEVISVLKKYPQC-IGTSEQKIL 330

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2102827 AT3G46950 "AT3G46950" [Arabidopsis thaliana (taxid:3702)]

 Score = 333 (122.3 bits), Expect = 3.8e-30, P = 3.8e-30
 Identities = 105/336 (31%), Positives = 175/336 (52%)

Query:     1 MFSLIC---KTL-IEKPGSIDLKISYARN-LKTIIPSVNS-ISKPSDERSPT--VSFLTH 52
             MFSLI    K++ ++K  ++ + +S  +N       S +S I+K S  +  T  VS+L  
Sbjct:     1 MFSLILHGRKSVELQKWRNLRVTVSIVQNAFPFTTKSFSSTIAKDSSPKGSTFTVSYLVE 60

Query:    53 SCGLSLEKAISVSKLVKIQDTEKPNSSIQLLTSRGFTKPQIATLISKYPRILSHDPEKVL 112
             S GL+ + A ++SK V  +D   P+S + LL S GF   QI+ +I  YPR+L  D EK L
Sbjct:    61 SLGLTKKLAETISKKVTFEDKVNPDSVLNLLRSNGFKDSQISRIIRAYPRLLVTDAEKSL 120

Query:   113 KPKIEYLESLGISGPDLAKILCPYPELLSRSLENHIIPTFDFLKGVFQANGNLVYALKQS 172
             +PK+++L+S G S  ++ +I+   P +L +  E  +   +DF+K + Q   +L  +  + 
Sbjct:   121 RPKLQFLKSRGASSSEVIEIVSNVPTILDKKGEESVSLYYDFVKDIMQDGKSLCISCPEG 180

Query:   173 IRVVNSDIQKRVVPNMNTLRAHGVPEPHIARLIM--LQPPSLVLRAELFKNVVDVIKEMG 230
              +   + I+     N++ LR  GVP+  +  L++   QP   V   E F+  +  + +MG
Sbjct:   181 KK--GNRIR-----NISVLRELGVPQKLLFSLLISRYQP---VCGKEKFEESLKKVVDMG 230

Query:   231 FEPSSKSFILAVRSMAMSSKATWQRKKEILISFGWSEDEFRMVFKRQPLFMMASAKKIRK 290
             F+P+   F+ A+  +   S+ T + K  +    G+SE E   +FK+ P F+  S KKI  
Sbjct:   231 FDPAKSKFVEALHVVYEMSEKTIEEKVNVYKRLGFSEAEIWAIFKKWPYFLKFSEKKII- 289

Query:   291 LMDFFVNKIGLEPSDIARY----PNLLIGSLEKKVL 322
             LM   + K GL   +I       P   I S E+K+L
Sbjct:   290 LMFETLKKCGLVEEEIISVLKSRPQC-IRSSEQKIL 324

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2036843 AT1G61960 "AT1G61960" [Arabidopsis thaliana (taxid:3702)]

 Score = 329 (120.9 bits), Expect = 1.0e-29, P = 1.0e-29
 Identities = 89/284 (31%), Positives = 152/284 (53%)

Query:    46 TVSFLTHSCGLSLEKAISVSKLVKIQDTEKPNSSIQLLTSRGFTKPQIATLISKYPRILS 105
             TVS+L  S GL+ + A S+SK V  ++   P+S + LLTS GFTK QI+++I+ YPR+L+
Sbjct:    54 TVSYLVDSLGLTTKLAESISKKVSFEERRNPDSVLSLLTSYGFTKSQISSIITIYPRLLA 113

Query:   106 HDPEKVLKPKIEYLESLGISGPDLAKILCPYPELLSRSLENHIIPTFDFLKGVFQANGNL 165
              D EK + PK++ L+S G S  +L +I+   P++L +     I   +DF+K + +A+ + 
Sbjct:   114 LDAEKSIAPKLQSLQSRGASSSELTQIVSTVPKILGKRGHKSITVYYDFVKDIIEADKSS 173

Query:   166 VYA-LKQSIRVVNSDIQKRVVPNMNTLRAHGVPEPHIARLIML--QPPSLVLRAELFKNV 222
              Y  L  S    N   +K  + N++ LR  GV +  +  L++   QP   V   E F+  
Sbjct:   174 SYEKLCHSFPQGN---KKNKIRNISVLRELGVAQRLLFPLLISDGQP---VCGKERFEES 227

Query:   223 VDVIKEMGFEPSSKSFILAVRSMAMSSKATWQRKKEILISFGWSEDEFRMVFKRQPLFMM 282
             +  + EMGF+P +  F+ A+R +   S  T + K  +    G+   +   +FK+ P F+ 
Sbjct:   228 LKKVVEMGFDPETTKFVEALRVIYRMSDKTIEEKVNVYKRLGFGVADVWAIFKKWPSFLS 287

Query:   283 ASAKKIRKLMDFFVNKIGLEPSDIA----RYPNLLIGSLEKKVL 322
              S KKI    +  +   GL   ++     ++P  +  S E+K++
Sbjct:   288 YSEKKITHTFET-LKSCGLLKHEVLLLLKKHPKCICSS-EQKIV 329

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2036858 AT1G61970 "AT1G61970" [Arabidopsis thaliana (taxid:3702)]

 Score = 321 (118.1 bits), Expect = 7.1e-29, P = 7.1e-29
 Identities = 79/263 (30%), Positives = 139/263 (52%)

Query:    46 TVSFLTHSCGLSLEKAISVSKLVKIQDTEKPNSSIQLLTSRGFTKPQIATLISKYPRILS 105
             TVS+L  S GL+ + A S+S+ V  +D   P+S + LLTS GFT  QI+T+I  YP++L 
Sbjct:    54 TVSYLVDSLGLTTKLAESISRKVSFEDKNNPDSVLNLLTSHGFTGSQISTIIRDYPQLLI 113

Query:   106 HDPEKVLKPKIEYLESLGISGPDLAKILCPYPELLSRSLENHIIPTFDFLKGVFQANGNL 165
              D EK L PK+++L+S G S  ++ +I+   PE+L +     I   +DF+K       + 
Sbjct:   114 ADAEKSLGPKLQFLQSRGASSSEITEIVSSVPEILGKKGHKTISVYYDFIKDTLLEKSSK 173

Query:   166 VYALKQSIRVVNSDIQKRVVPNMNTLRAHGVPEPHIARLIMLQPPSLVLRAELFKNVVDV 225
                L  S+   N + + R   N++ LR  G+P   +  L+ +     V   E F+  +  
Sbjct:   174 NEKLCHSLPQGNLENKIR---NVSVLRELGMPHKLLFSLL-ISDSQPVCGKEKFEETLKK 229

Query:   226 IKEMGFEPSSKSFILAVRSMAMSSKATWQRKKEILISFGWSEDEFRMVFKRQPLFMMASA 285
             + EMGF+P++  F+ A++ +   ++ T + K  +  S G+   +    FK+ P+ +  S 
Sbjct:   230 VVEMGFDPTTSKFVEALQVIYKMNEKTIEEKVHLYKSLGFDVGDVWSSFKKWPISLRVSE 289

Query:   286 KKIRKLMDFFVNKIGLEPSDIAR 308
             KK+   ++ F+  +G    + A+
Sbjct:   290 KKMLDSIETFLG-LGFSRDEFAK 311

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:1006230704 AT1G62085 "AT1G62085" [Arabidopsis thaliana (taxid:3702)]

 Score = 320 (117.7 bits), Expect = 9.1e-29, P = 9.1e-29
 Identities = 87/283 (30%), Positives = 151/283 (53%)

Query:    46 TVSFLTHSCGLSLEKAISVSKLVKIQDTEKPNSSIQLLTSRGFTKPQIATLISKYPRILS 105
             +VS+L  S GL  + A S+SK V  +D   P+S + LL S GFT  QI+++I+ YP++L 
Sbjct:    57 SVSYLVDSLGLPKKVAESISKKVSFEDKGNPDSVLSLLRSHGFTDSQISSIITDYPQLLV 116

Query:   106 HDPEKVLKPKIEYLESLGISGPDLAKILCPYPELLSRSLENHIIPTFDFLKGVFQANGNL 165
              D EK + PK+++L+S G S  +L  I+   PE+L +  +  I   +DF+K + +A+ + 
Sbjct:   117 ADAEKSIGPKLQFLQSRGASRSELTHIVSTVPEILGKRGDKTISIYYDFVKEIIEADKSS 176

Query:   166 VYALKQSIRVVNSDIQKRVVPNMNTLRAHGVPEPHIARLIML--QPPSLVLRAELFKNVV 223
              +  K    +     Q+  + N+  LR  GVP+  +  L++   QP   V   E F+  +
Sbjct:   177 KFE-KLCHSLPEGSKQENKIRNVLVLRELGVPQRLLFPLLISDHQP---VCGKENFEESL 232

Query:   224 DVIKEMGFEPSSKSFILAVRSMAMSSKATWQRKKEILISFGWSEDEFRMVFKRQPLFMMA 283
               + EMGF+P++  F+ A+R +      T + K  +  S G+S  +   +FK+ P F+  
Sbjct:   233 KKVVEMGFDPTTSKFVKALRVVYRFRDKTIEAKVNVCKSLGFSVGDVWAMFKKCPSFLNF 292

Query:   284 SAKKIRKLMDFFVNKIGLEPSDIA----RYPNLLIGSLEKKVL 322
             S  KI +  +  + K GL   D+     ++P  +  S E+K++
Sbjct:   293 SENKIVQTWET-LKKCGLLEDDVLSVLKKFPQCINAS-EQKIM 333

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2036878 AT1G61990 "AT1G61990" [Arabidopsis thaliana (taxid:3702)]

 Score = 315 (115.9 bits), Expect = 3.1e-28, P = 3.1e-28
 Identities = 97/330 (29%), Positives = 165/330 (50%)

Query:     1 MFSLIC--KTLIEKPGSIDLKISY--ARNLKTIIPSVN----SISKPSDERSPTVSFLTH 52
             M+SLI   + L++    + L +S   A  L     S      SI      ++ TVS+L  
Sbjct:     1 MYSLILHGRRLVQSQKCLSLSVSVQNAFVLSNSFSSARAADVSIRDGRKGKNFTVSYLVD 60

Query:    53 SCGLSLEKAISVSKLVKIQDTEKPNSSIQLLTSRGFTKPQIATLISKYPRILSHDPEKVL 112
             S GLS + A S+S+ V  +D   P+S + L  S GFT  QI+T+I+ YP +L  D +K L
Sbjct:    61 SLGLSKKLAESISRKVSFEDKVNPDSVLSLFRSYGFTDSQISTIITDYPLLLVADAKKAL 120

Query:   113 KPKIEYLESLGISGPDLAKILCPYPELLSRSLENHIIPTFDFLKGVFQANGNLVYALKQS 172
               K++ L+S G S  ++ +I+   P +L +     I   +D +K +  A+ +  Y L Q 
Sbjct:   121 GRKLQILQSRGASSSEITEIVSTVPRILGKK---SITVYYDAVKDIIVADTSSSYELPQG 177

Query:   173 IRVVNSDIQKRVVPNMNTLRAHGVPEPHIARLIMLQPPSLVLRAELFKNVVDVIKEMGFE 232
                     Q   + N++ LR  G+P   +  L++ +    V   E F   +  + EMGF+
Sbjct:   178 S-------QGNKIRNVSALRELGMPSRLLLPLLVSKSQP-VCGKENFDASLKKVVEMGFD 229

Query:   233 PSSKSFILAVRSMAMSSKATWQRKKEILISFGWSEDEFRMVFKRQPLFMMASAKKIRKLM 292
             P++  F+LA+R +   S+ T + K  +  S G++ D+   +FK+ P  +  S KKI K  
Sbjct:   230 PTTTKFVLALRMLYQMSEKTIEEKVVVFRSLGFTVDDVWEIFKKTPSVLKVSKKKILKSA 289

Query:   293 DFFVNKIGLEPSD----IARYPNLLIGSLE 318
             + F++ +G   ++    + RYP  +  S+E
Sbjct:   290 ETFLD-LGYSRAEFLMMVKRYPPCIEYSVE 318

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0005739 "mitochondrion" evidence=IDA

TAIR|locus:2172798 AT5G23930 "AT5G23930" [Arabidopsis thaliana (taxid:3702)]

 Score = 305 (112.4 bits), Expect = 4.6e-27, P = 4.6e-27
 Identities = 89/309 (28%), Positives = 156/309 (50%)

Query:    21 SYARNLKTIIPSVNSISKPSDERSP---TVSFLTHSCGLSLEKAISVSKLVKIQDTEKPN 77
             ++  +  +++ +   +S   DER     TVS+L  S GL+ + A S+S      +   P+
Sbjct:    30 AFTESFSSVVTTTKDLSL-EDERKRKTFTVSYLIDSLGLTTKLAESISMKANFDEKGNPD 88

Query:    78 SSIQLLTSRGFTKPQIATLISKYPRILSHDPEKVLKPKIEYLESLGISGPDLAKILCPYP 137
             S ++LL S GF   QI+++IS YPR L  +PEK L+ K+ +L+  G S  +L +I+   P
Sbjct:    89 SVLKLLRSYGFKDSQISSIISTYPRFLIENPEKTLRAKLHFLKLNGASSSELTEIVSKVP 148

Query:   138 ELLSRSLENHIIPTFDFLKGVFQANGNLVYALKQSIRVVNSDIQKRVVPNMNTLRAHGVP 197
             ++L +     I   +D++K + Q   +   + K+  +  N   + R   N++ LR  GVP
Sbjct:   149 KILGKRGGKWISHYYDYVKEILQDQDSSSSSSKR--KQTN---RNR---NVSVLRKLGVP 200

Query:   198 EPHIARLIMLQPPSLVLRAELFKNVVDVIKEMGFEPSSKSFILAVRSMAMSSKATWQRKK 257
             +  +  L++ +    V   E F+  V  I EMGF+P S  F+ A+      S  T + K 
Sbjct:   201 QRLLLNLLISRAKP-VCGKERFEESVKKIVEMGFDPKSPKFVNALYVFYELSDKTIEEKV 259

Query:   258 EILISFGWSEDEFRMVFKRQPLFMMASAKKIRKLMDFFVNKIGLEPSDIA----RYPNLL 313
                I  G S +E   VFK+ P  +  S K I +  +  + ++GL   ++     +YP   
Sbjct:   260 NAYIRLGLSVNEVWAVFKKWPFSLKYSEKNIIQKFET-LKRVGLTKEEVCLVVKKYPEC- 317

Query:   314 IGSLEKKVL 322
             +G+ E+K++
Sbjct:   318 VGTSEEKIV 326

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00019795001 SubName- Full=Chromosome chr5 scaffold_2, whole genome shotgun sequence; (1161 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	392
pfam02536	345	pfam02536, mTERF, mTERF	2e-23
pfam02536	345	pfam02536, mTERF, mTERF	1e-18
PLN03196	487	PLN03196, PLN03196, MOC1-like protein; Provisional	3e-15
pfam02536	345	pfam02536, mTERF, mTERF	9e-11
PLN03196	487	PLN03196, PLN03196, MOC1-like protein; Provisional	3e-10
PLN03196	487	PLN03196, PLN03196, MOC1-like protein; Provisional	3e-06
smart00733	31	smart00733, Mterf, Mitochondrial termination facto	7e-04
PLN03196	487	PLN03196, PLN03196, MOC1-like protein; Provisional	0.004

>gnl|CDD|217090 pfam02536, mTERF, mTERF

 Score = 99.4 bits (248), Expect = 2e-23
 Identities = 72/241 (29%), Positives = 122/241 (50%), Gaps = 4/241 (1%)

Query: 82  LLTSRGFTKPQIATLISKYPRILSHDPEKVLKPKIEYLESLGISGPDLAKILCPYPELLS 141
           LL S GFT   I+T+I  YP +L  D EK L+PK+++L+S G S  +L KI+   P++L 
Sbjct: 3   LLRSLGFTDSLISTIIRDYPLLLGADAEKNLQPKLQFLQSRGASKSELTKIVSTVPKILG 62

Query: 142 RSLENHIIPTFDFLKGVFQANGNLVYALKQSIRVVNSDIQKRVVPNMNTLRAHGVPEPHI 201
           +     I   +DFLK +  A+ +    L++    +        + N++ LR  GVP P +
Sbjct: 63  KKGVKSISSVYDFLKKIIVADLDKSSKLEKYPESLPQGNNGNKIRNVSVLRELGVP-PKL 121

Query: 202 ARLIMLQPPSLVLRAELFKNVVDVIKEMGFEPSSKSFILAVRSMAM--SSKATWQRKKEI 259
              +++  P  V   E+F+  +  + EMGF+P++   ++A R   +  SS  T +   E 
Sbjct: 122 LFSLLISRPRPVCGKEVFEESLKKVVEMGFDPTTFKRVIAKRPRLLLYSSDKTIKPNVEF 181

Query: 260 LISFGWSEDEFRMVFKRQPLFMMASAKKIRKLMDFFVNKIGLE-PSDIARYPNLLIGSLE 318
           L S G+S ++   + K+ P  + +S KK  +  +       LE  S I + P  +  S +
Sbjct: 182 LKSLGFSVEDVWAILKKCPELLGSSEKKKLQTQEILKTCGLLEFLSVIKKMPQFVSYSEQ 241

Query: 319 K 319
           K
Sbjct: 242 K 242

This family contains one sequence of known function Human mitochondrial transcription termination factor (mTERF) the rest of the family consists of hypothetical proteins none of which have any functional information. mTERF is a multizipper protein possessing three putative leucine zippers one of which is bipartite. The protein binds DNA as a monomer. The leucine zippers are not implicated in a dimerisation role as in other leucine zippers. Length = 345

>gnl|CDD|217090 pfam02536, mTERF, mTERF

 Score = 86.0 bits (213), Expect = 1e-18
 Identities = 61/280 (21%), Positives = 110/280 (39%), Gaps = 6/280 (2%)

Query: 78  SSIQLLTSRGFTKPQIATLISKYPRILSHDPEKVLKPKIEYLESLGISGPDLAKIL-CPY 136
           S    L          ++ + KYP  L           +  L  LG+    L  +L    
Sbjct: 71  SVYDFLKKIIVADLDKSSKLEKYPESLPQGNNGNKIRNVSVLRELGVPPKLLFSLLISRP 130

Query: 137 PELLSRSLENHIIPTFDFLKGVFQANGNLVYALKQSIRVVNSDIQKRVVPNMNTLRAHGV 196
             +  + +    +     + G        V A +  + + +SD  K + PN+  L++ G 
Sbjct: 131 RPVCGKEVFEESLKKVVEM-GFDPTTFKRVIAKRPRLLLYSSD--KTIKPNVEFLKSLGF 187

Query: 197 PEPHIARLIMLQPPSLVLRAELFKNVVDVIKEMGFEPSSKSFILAVRSMAMSSKATWQRK 256
                   I+ + P L+  +E  K     I +        S I  +      S+     K
Sbjct: 188 SV-EDVWAILKKCPELLGSSEKKKLQTQEILKTCGLLEFLSVIKKMPQFVSYSEQKILNK 246

Query: 257 KEILISFGWSEDEFRMVFKRQPLFMMASAKKIRKLMDFFVNKIGLEPSDIARYPNLLIGS 316
            E L+  G+S +E   + KR P  +  S +K++K  +F V ++     ++  +P +   S
Sbjct: 247 IEFLLGLGFSREEIAKMVKRCPQLLGLSVEKVKKKTEFLVKEMNWPLKELVEFPQVFGYS 306

Query: 317 LEKKVLPRWSVLQVLMSKNLLKKDVNVSLALFVTKEVFER 356
           LEK++ PR +V++ LMSK       ++S  L  T E F +
Sbjct: 307 LEKRIKPRCNVVKALMSKGKSIL-PSLSSMLKCTDEEFLQ 345

This family contains one sequence of known function Human mitochondrial transcription termination factor (mTERF) the rest of the family consists of hypothetical proteins none of which have any functional information. mTERF is a multizipper protein possessing three putative leucine zippers one of which is bipartite. The protein binds DNA as a monomer. The leucine zippers are not implicated in a dimerisation role as in other leucine zippers. Length = 345

>gnl|CDD|215628 PLN03196, PLN03196, MOC1-like protein; Provisional

 Score = 76.7 bits (189), Expect = 3e-15
 Identities = 60/290 (20%), Positives = 129/290 (44%), Gaps = 13/290 (4%)

Query: 99  KYPRILSHDPEKVLKPKIEYLESLGISGPDLAKILCPYPELLSRSLENHIIPTFDFLKGV 158
           +YP +L    E  +   + YL S+G++  D+  +L  +PE+L   + N+I P  D+L+ +
Sbjct: 183 RYPELLGFKLEGTMSTSVAYLVSIGVAPRDIGPMLTRFPEILGMRVGNNIKPKVDYLESL 242

Query: 159 FQANGNLVYALKQSIRVVNSDIQKRVVPNMNTLRAHGVPEPHIARLIMLQPPSLV--LRA 216
                 +   L++   ++  D+++ V PN+  L   GV +  +  +I   P  L   L+A
Sbjct: 243 GLPRLAVARILEKRPYILGFDLEETVKPNVECLLEFGVRKEALPSVIAQYPDILGLDLKA 302

Query: 217 ELFKNVVDVIKEMGFEPSSKSFILAVRSMAMSSKATWQRKK-EILISFGWSEDEFRMVFK 275
           +L +    +  ++  +P     ++      +S       K  E L   G+S  +   +  
Sbjct: 303 KLAEQQYWLTSKLKIDPEDFGRVIEKLPQIVSLNRNVALKHVEFLRGRGFSAQDVAKMVV 362

Query: 276 RQPLFMMASAKKIRKLMDFFVNKIGLEPSDIARYPNLLIGSLEKKVLPRWSVLQVLMSKN 335
           R P  +  + + ++  ++FF  ++     ++  +P      LE ++ PR+        + 
Sbjct: 363 RCPQILALNLEIMKPSLEFFKKEMKRPLKELVEFPAYFTYGLESRIKPRY--------ER 414

Query: 336 LLKKDVNVSLALFV--TKEVFERRFVTSYMHEPEVMTAYQGGLGVQAVGG 383
           + KK +  SLA F+  + + FE+R    ++   E+   +  G  ++  G 
Sbjct: 415 VAKKGIKCSLAWFLNCSDDKFEQRMSGDFIEGEEMEPLFSMGGKLEMPGS 464

Length = 487

>gnl|CDD|217090 pfam02536, mTERF, mTERF

 Score = 62.5 bits (152), Expect = 9e-11
 Identities = 40/158 (25%), Positives = 67/158 (42%), Gaps = 5/158 (3%)

Query: 74  EKPNSSIQLLTSRGFTKPQIATLISKYPRILSHDPEKVLKPKIEYLESLGISGPDLAKIL 133
           E    S++ +   GF       +I+K PR+L +  +K +KP +E+L+SLG S  D+  IL
Sbjct: 137 EVFEESLKKVVEMGFDPTTFKRVIAKRPRLLLYSSDKTIKPNVEFLKSLGFSVEDVWAIL 196

Query: 134 CPYPELLSRSLENHIIPTFDFLKGVFQANGNLVYALKQSIRVVNSDIQKRVVPNMNTLRA 193
              PELL  S +  +               +++  + Q +      I    +  +  L  
Sbjct: 197 KKCPELLGSSEKKKLQTQEILKTCGLLEFLSVIKKMPQFVSYSEQKI----LNKIEFLLG 252

Query: 194 HGVPEPHIARLIMLQPPSLVLRAEL-FKNVVDVIKEMG 230
            G     IA+++   P  L L  E   K    ++KEM 
Sbjct: 253 LGFSREEIAKMVKRCPQLLGLSVEKVKKKTEFLVKEMN 290

This family contains one sequence of known function Human mitochondrial transcription termination factor (mTERF) the rest of the family consists of hypothetical proteins none of which have any functional information. mTERF is a multizipper protein possessing three putative leucine zippers one of which is bipartite. The protein binds DNA as a monomer. The leucine zippers are not implicated in a dimerisation role as in other leucine zippers. Length = 345

>gnl|CDD|215628 PLN03196, PLN03196, MOC1-like protein; Provisional

 Score = 61.3 bits (149), Expect = 3e-10
 Identities = 38/153 (24%), Positives = 68/153 (44%), Gaps = 9/153 (5%)

Query: 83  LTSRGFTKPQIATLISKYPRILSHDPEKVLKPKIEYLESLGISGPDLAKILCPYPELLSR 142
           L S G  +  +A ++ K P IL  D E+ +KP +E L   G+    L  ++  YP++L  
Sbjct: 239 LESLGLPRLAVARILEKRPYILGFDLEETVKPNVECLLEFGVRKEALPSVIAQYPDILGL 298

Query: 143 SLENHIIPTFDFLKGVFQAN----GNLVYALKQSIRVVNSDIQKRVVPNMNTLRAHGVPE 198
            L+  +     +L    + +    G ++  L Q + +  +   K V      LR  G   
Sbjct: 299 DLKAKLAEQQYWLTSKLKIDPEDFGRVIEKLPQIVSLNRNVALKHV----EFLRGRGFSA 354

Query: 199 PHIARLIMLQPPSLVLRAELFKNVVDVIK-EMG 230
             +A++++  P  L L  E+ K  ++  K EM 
Sbjct: 355 QDVAKMVVRCPQILALNLEIMKPSLEFFKKEMK 387

Length = 487

>gnl|CDD|215628 PLN03196, PLN03196, MOC1-like protein; Provisional

 Score = 48.9 bits (117), Expect = 3e-06
 Identities = 47/216 (21%), Positives = 101/216 (46%), Gaps = 4/216 (1%)

Query: 97  ISKYPRILSHDPEKVLKPKIEYLESLGISGPDLAKILCPYPELLSRSLENHIIPTFDFLK 156
           I++YP +L    +K + P ++YLE LG++   L ++L  YP++L  S+   + P   +L+
Sbjct: 109 INEYPLVLGCSVKKNMIPVLDYLEKLGVTRSSLPELLRRYPQVLHASVVVDLAPVVKYLQ 168

Query: 157 GVFQANGNLVYALKQSIRVVNSDIQKRVVPNMNTLRAHGVPEPHIARLIMLQPPSLVLR- 215
           G+     ++   L++   ++   ++  +  ++  L + GV    I  ++   P  L +R 
Sbjct: 169 GLDVKRQDIPRVLERYPELLGFKLEGTMSTSVAYLVSIGVAPRDIGPMLTRFPEILGMRV 228

Query: 216 AELFKNVVDVIKEMGFEPSSKSFILAVRS--MAMSSKATWQRKKEILISFGWSEDEFRMV 273
               K  VD ++ +G    + + IL  R   +    + T +   E L+ FG  ++    V
Sbjct: 229 GNNIKPKVDYLESLGLPRLAVARILEKRPYILGFDLEETVKPNVECLLEFGVRKEALPSV 288

Query: 274 FKRQP-LFMMASAKKIRKLMDFFVNKIGLEPSDIAR 308
             + P +  +    K+ +   +  +K+ ++P D  R
Sbjct: 289 IAQYPDILGLDLKAKLAEQQYWLTSKLKIDPEDFGR 324

Length = 487

>gnl|CDD|197848 smart00733, Mterf, Mitochondrial termination factor repeats

 Score = 36.3 bits (85), Expect = 7e-04
 Identities = 15/30 (50%), Positives = 23/30 (76%), Gaps = 1/30 (3%)

Query: 96  LISKYPRILSHDPEKVLKPKIEYLESLGIS 125
           ++ K+P+IL +  EK LKPK+E+L+ LG S
Sbjct: 3   IVKKFPQILGYS-EKKLKPKVEFLKELGFS 31

Human mitochondrial termination factor is a DNA-binding protein that acts as a transcription termination factor. Six repeats occur in human mTERF, that also are present in numerous plant proteins. Length = 31

>gnl|CDD|215628 PLN03196, PLN03196, MOC1-like protein; Provisional

 Score = 38.9 bits (91), Expect = 0.004
 Identities = 31/123 (25%), Positives = 61/123 (49%), Gaps = 17/123 (13%)

Query: 45  PTVSFLTHSCGLSLEKAISVSKLVK---------IQDTEKPNSSIQLLTSRGFTKPQIAT 95
           P V +L     L L +   V+++++         +++T KPN  ++ L   G  K  + +
Sbjct: 234 PKVDYL---ESLGLPRLA-VARILEKRPYILGFDLEETVKPN--VECLLEFGVRKEALPS 287

Query: 96  LISKYPRILSHDPEKVLKPKIEYLES-LGISGPDLAKILCPYPELLSRSLENHIIPTFDF 154
           +I++YP IL  D +  L  +  +L S L I   D  +++   P+++S +  N  +   +F
Sbjct: 288 VIAQYPDILGLDLKAKLAEQQYWLTSKLKIDPEDFGRVIEKLPQIVSLN-RNVALKHVEF 346

Query: 155 LKG 157
           L+G
Sbjct: 347 LRG 349

Length = 487

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	392
PLN03196	487	MOC1-like protein; Provisional	100.0
PF02536	345	mTERF: mTERF; InterPro: IPR003690 This family curr	100.0
PLN03196	487	MOC1-like protein; Provisional	100.0
PF02536	345	mTERF: mTERF; InterPro: IPR003690 This family curr	100.0
KOG1267	413	consensus Mitochondrial transcription termination	99.95
KOG1267	413	consensus Mitochondrial transcription termination	99.75
smart00733	31	Mterf Mitochondrial termination factor repeats. Hu	97.18
smart00733	31	Mterf Mitochondrial termination factor repeats. Hu	96.85
PF11955	335	PORR: Plant organelle RNA recognition domain; Inte	92.53
cd04790	172	HTH_Cfa-like_unk Helix-Turn-Helix DNA binding doma	90.25

>PLN03196 MOC1-like protein; Provisional

Probab=100.00  E-value=7.1e-56  Score=447.60  Aligned_cols=313  Identities=21%  Similarity=0.386  Sum_probs=231.5

Q ss_pred             HHHhHhhcCCCHHHHHhhcccc-cccCCCChhhHHHhhhhCCCChHHHHHHHHhCCceeccCcCCchhHHHHHHHhCCCC
Q 046450           47 VSFLTHSCGLSLEKAISVSKLV-KIQDTEKPNSSIQLLTSRGFTKPQIATLISKYPRILSHDPEKVLKPKIEYLESLGIS  125 (392)
Q Consensus        47 v~~L~~~~Gls~~~~~~i~~~~-~~~~~~~~~~~l~~L~~lGl~~~~i~~ll~~~P~lL~~~~~~~l~p~v~fL~~lGls  125 (392)
                      ++|| .++|++.+++.+ .+.+ .+....++.++++||+++|+++.++++++.++|.+|.+++++++.|+++||+++|++
T Consensus        96 l~~L-~s~G~~~~~i~~-~P~iL~~~v~~~l~Pvl~fL~~lG~s~~~i~~lI~~~P~lL~~sve~~L~P~v~fL~~lGvs  173 (487)
T PLN03196         96 VEFL-HKLGLTIEDINE-YPLVLGCSVKKNMIPVLDYLEKLGVTRSSLPELLRRYPQVLHASVVVDLAPVVKYLQGLDVK  173 (487)
T ss_pred             HHHH-HHcCCChHHhcc-CcHHhhcCHhhhhHHHHHHHHHcCCCHHHHHHHHHhCCceecccHHHHHHHHHHHHHHcCCC
Confidence            3555 466666666652 1222 222234566666666666666666666666666666666666666666666666666


Q ss_pred             chhHHHhhhcCccccccccccchhhHHHHHHhhccCCchHHHHHhhCcceeccCcccchhhhHHHHHHCCCCchhhhccc
Q 046450          126 GPDLAKILCPYPELLSRSLENHIIPTFDFLKGVFQANGNLVYALKQSIRVVNSDIQKRVVPNMNTLRAHGVPEPHIARLI  205 (392)
Q Consensus       126 ~~~l~~il~~~P~lL~~~~~~~l~p~v~fL~~lg~~~~~i~~il~~~P~lL~~s~~~~l~~~v~~L~~lGv~~~~i~~ll  205 (392)
                      ++++++++.++|++|++++++++.|+++||+++|++.+++++++.++|++|+++++++++|+++||+++|++.++|++++
T Consensus       174 ~~~i~~~l~r~P~LL~~~~e~~l~p~v~fL~~lGvs~~~i~~il~~~P~iL~~sve~~i~P~v~fL~~lGv~~~~I~~il  253 (487)
T PLN03196        174 RQDIPRVLERYPELLGFKLEGTMSTSVAYLVSIGVAPRDIGPMLTRFPEILGMRVGNNIKPKVDYLESLGLPRLAVARIL  253 (487)
T ss_pred             HHHHHHHHHhCchhhcCCHHHHHHHHHHHHHHcCCCHHHHHHHHHhCcHHhhcChhhhHHHHHHHHHHcCCCHHHHHHHH
Confidence            66666666666666666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             ccCCceeeechh-hHHHHHHHHHHhCCCCC-------------------------------------chh-HHHHHHHHH
Q 046450          206 MLQPPSLVLRAE-LFKNVVDVIKEMGFEPS-------------------------------------SKS-FILAVRSMA  246 (392)
Q Consensus       206 ~~~P~il~~~~~-~~~~~v~~L~~lG~~~~-------------------------------------~~~-~~~~~~~~~  246 (392)
                      .++|++|+++.+ ++++++++|.++|++++                                     +.. ++...+.++
T Consensus       254 ~~~P~iL~~sle~~lkp~v~~L~elGv~~~~i~~lI~~~P~iL~~s~e~kl~~~~~fL~~~lG~s~e~i~~~v~k~P~il  333 (487)
T PLN03196        254 EKRPYILGFDLEETVKPNVECLLEFGVRKEALPSVIAQYPDILGLDLKAKLAEQQYWLTSKLKIDPEDFGRVIEKLPQIV  333 (487)
T ss_pred             HhCCceeEcCHHHhHHHHHHHHHHcCCCHHHHHHHHHhCCceeEecHHHhhhHHHHHHHHhhCCCHHHHHHHHHhcchhh
Confidence            666666666654 56666666666666554                                     221 222334556


Q ss_pred             hcCHHHHHHHHHHHHHcCCCHHHHHHHHHhCCccccccHHHHHHHHHHHHHhhCCChhhHhcCCcccccCCCCccchhHH
Q 046450          247 MSSKATWQRKKEILISFGWSEDEFRMVFKRQPLFMMASAKKIRKLMDFFVNKIGLEPSDIARYPNLLIGSLEKKVLPRWS  326 (392)
Q Consensus       247 ~~s~~~l~~kv~fL~~lG~s~~ei~~~i~~~P~iL~~s~e~L~~~~~fL~~~~G~~~~~i~~~P~lL~~sle~~l~pR~~  326 (392)
                      .+++++|++|++||+++||+.++|.+|+.++|++|++|.++|+++++||+++||++.++|++||++|+||+|+||+|||+
T Consensus       334 ~lSe~kl~~kvefL~~~Gls~edI~~mv~k~P~lL~~S~~~l~~k~dFlvneMg~~~~~Iv~fP~~LsySLEkRI~PR~~  413 (487)
T PLN03196        334 SLNRNVALKHVEFLRGRGFSAQDVAKMVVRCPQILALNLEIMKPSLEFFKKEMKRPLKELVEFPAYFTYGLESRIKPRYE  413 (487)
T ss_pred             cccHHHHHHHHHHHHHcCCCHHHHHHHHHhCCceeeccHHHHHHHHHHHHHHhCCCHHHHHhChHHhccChhhhhHHHHH
Confidence            78899999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             HHHHHHHcCCCCCCcccccccccChHHHHHHHhccCCCChH
Q 046450          327 VLQVLMSKNLLKKDVNVSLALFVTKEVFERRFVTSYMHEPE  367 (392)
Q Consensus       327 ~l~~L~~~G~~~~~~~l~~~l~~s~~~F~~~~v~~~~e~~~  367 (392)
                      +   |+++|+   ..++.++|.+||++|+++|+..|.|.++
T Consensus       414 ~---L~~kGl---~~sL~~~L~~sd~~F~~r~v~~y~e~~~  448 (487)
T PLN03196        414 R---VAKKGI---KCSLAWFLNCSDDKFEQRMSGDFIEGEE  448 (487)
T ss_pred             H---HHHcCC---CCCHHHHhccCHHHHHHHHhhhcccccc
Confidence            6   779998   6799999999999999999999998733

>PF02536 mTERF: mTERF; InterPro: IPR003690 This family currently contains one sequence of known function human mitochondrial transcription termination factor (mTERF), a multizipper protein but binds to DNA as a monomer, with evidence pointing to intramolecular leucine zipper interactions []

Probab=100.00  E-value=1.9e-48  Score=381.71  Aligned_cols=304  Identities=28%  Similarity=0.447  Sum_probs=215.0

Q ss_pred             hHhhcCCCHHHHHhhcccc----cccCCCChhhHHHhhhhCCCChHHHHHHHHhCCceeccCcCCchhHHHHHHHhCCCC
Q 046450           50 LTHSCGLSLEKAISVSKLV----KIQDTEKPNSSIQLLTSRGFTKPQIATLISKYPRILSHDPEKVLKPKIEYLESLGIS  125 (392)
Q Consensus        50 L~~~~Gls~~~~~~i~~~~----~~~~~~~~~~~l~~L~~lGl~~~~i~~ll~~~P~lL~~~~~~~l~p~v~fL~~lGls  125 (392)
                      +.+++||+.+++.+++++.    ..+...++.++++||.++|++..++++++.++|++|.++.++++.|.++||.++|++
T Consensus         3 ~~~~~gf~~~~i~~~i~~~P~~l~~~~~~~l~pk~~fl~s~G~s~~~i~~il~~~P~il~~s~~~~i~p~~~~L~~~~~s   82 (345)
T PF02536_consen    3 LLKNHGFSDSQISKLIRRYPRLLLCDPEKTLLPKLEFLRSLGFSSSDIAKILSKNPQILSRSLEKNIIPVFDFLKSIGLS   82 (345)
T ss_dssp             HHHHHHHHTS-HHHHHH-H-HHHHT-SS-HHHHHHHHHHHTT--HHHHHHHHHH-GGGGGS--HHHHHHHHHHHTTTSS-
T ss_pred             HHHHcCCCHHHHHHHHHhCCceEEecCccchhHHHHHHHHCCCCHHHHHHHHHhChHHHhccchhhHHHHHHHHHHHcCC
Confidence            3467788888888887653    234446778888888888888888888888888888888777788888888888888


Q ss_pred             chhHHHhhhcCccccccccccchhhHHHHHHhhccCCchHHHHHhhCcceeccCcccchhhhHHHHHHCCCCchhhhccc
Q 046450          126 GPDLAKILCPYPELLSRSLENHIIPTFDFLKGVFQANGNLVYALKQSIRVVNSDIQKRVVPNMNTLRAHGVPEPHIARLI  205 (392)
Q Consensus       126 ~~~l~~il~~~P~lL~~~~~~~l~p~v~fL~~lg~~~~~i~~il~~~P~lL~~s~~~~l~~~v~~L~~lGv~~~~i~~ll  205 (392)
                      ++++.+++.++|++|..+.+.++.+++.||+++|++.+.+.+.+..+|.++...  +++++.++++.++|++++++.+++
T Consensus        83 ~~d~~~~l~r~p~~l~~~~~~~l~~~v~~L~~lGv~~~~~~~~l~~~~~~~~~~--~~~~~~v~~l~~lG~~~~~~~~vi  160 (345)
T PF02536_consen   83 DEDIVKVLKRYPRILSFSVEENLSPNVAFLRSLGVPPSQIISLLISRPPLFLSS--EKIKERVEFLKELGFDPEKIGRVI  160 (345)
T ss_dssp             HHHHHHHHHH-SHHHHS---HHHHHHHHHHHHTT--HHHHHHHHHH-CHHHHS---HHHHCHHHHHCCCTSSHHHHCCCH
T ss_pred             HHHHHHHHHhcchhhccchHhhhhhhhhHHhhcCCcHHHHHHHHHhcCccccch--hHHHHHHHHHHHhCCCchhhcccc
Confidence            888888888888888777666788888888888887776666666666655444  347777777777777777777777


Q ss_pred             ccCCceeeec-hhhHHHHHHHHHHhCCCCCch----------------------------------hHHHHHHHHHhcCH
Q 046450          206 MLQPPSLVLR-AELFKNVVDVIKEMGFEPSSK----------------------------------SFILAVRSMAMSSK  250 (392)
Q Consensus       206 ~~~P~il~~~-~~~~~~~v~~L~~lG~~~~~~----------------------------------~~~~~~~~~~~~s~  250 (392)
                      ..+|.++... .+.+++++++|+++|++.++.                                  .++...+.++.++.
T Consensus       161 ~~~P~~l~~~~~~~~~~~v~~L~~~G~~~~~i~~~l~~~P~~l~~s~~~~l~~~~~l~~~~~~~~~~~i~~~p~il~~~~  240 (345)
T PF02536_consen  161 AKNPRLLLSDSESELKPKVEFLRSLGFSKEDIGKLLRKCPRLLSLSVEKILEPVLYLLSSGGVEEERVIKKFPQILSLSE  240 (345)
T ss_dssp             HHHHHHHCGSCCCCCHHHHHHHHHCTT-GHHHHHHHHHTTTGGGCGCHC---------------------------THHH
T ss_pred             cccchhhccccHHHHHHHHHHHHhhcccchhhhHHhhcccceecccccccccccccccccccccccccccccccccccch
Confidence            7777444433 345677777777777665532                                  12222233445567


Q ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHhCCccccccHHHHHHHHHHHHHhhCCChhhHhcCCcccccCCCCccchhHHHHHH
Q 046450          251 ATWQRKKEILISFGWSEDEFRMVFKRQPLFMMASAKKIRKLMDFFVNKIGLEPSDIARYPNLLIGSLEKKVLPRWSVLQV  330 (392)
Q Consensus       251 ~~l~~kv~fL~~lG~s~~ei~~~i~~~P~iL~~s~e~L~~~~~fL~~~~G~~~~~i~~~P~lL~~sle~~l~pR~~~l~~  330 (392)
                      +++.++++||+++|||.+||.+|+.++|+||++|.++++++++||.++||++.++|+++|++|+||+|+||+|||+++++
T Consensus       241 ~~l~~~i~~L~~lG~s~~ei~~mv~~~P~iL~~s~e~l~~k~~fl~~~m~~~~~~i~~~P~~l~~sLe~ri~PR~~~~~~  320 (345)
T PF02536_consen  241 EKLKPKIEFLQSLGFSEEEIAKMVRRFPQILSYSIEKLKPKFEFLVKEMGLPLEEIVEFPQYLSYSLEKRIKPRYEVLKV  320 (345)
T ss_dssp             HHHHHHHHHHHTTT--HHHHHHHHHHSGGGGGS-HHHHHHHHHHHHHCCT--HHHHHHSCHHHCS-HHHHHHHHHHHHHT
T ss_pred             HhHHHHHHHHHHhcCcHHHHHHHHHhCcchhhcchhhhhHHHHHHHHHhCcCHHHHhhCCceeEechhhhhhhHHHHHHH
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCCCCCcccccccccChHHHHH
Q 046450          331 LMSKNLLKKDVNVSLALFVTKEVFER  356 (392)
Q Consensus       331 L~~~G~~~~~~~l~~~l~~s~~~F~~  356 (392)
                      |+++|. ..++++.+++.+||++|++
T Consensus       321 l~~~g~-~~~~sl~~~l~~s~~~F~~  345 (345)
T PF02536_consen  321 LKSKGL-IINPSLSSMLSCSDEEFLK  345 (345)
T ss_dssp             T--TTT-GGGGGS-HHHHHHHHHHT-
T ss_pred             HHHCcC-CCCCCHHHHhhccHHHhcC
Confidence            999997 5689999999999999964

The precursors contain a mitochondrial targeting sequence, and the mature mTERF exhibits three leucine zippers, of which one is bipartite, and two widely spaced basic domains. Both basic domains and the three leucine zipper motifs are necessary for DNA binding. The leucine zippers are not implicated in a dimerisation role as in other leucine zippers []. The rest of the family consists of hypothetical proteins none of which have any functional information.; PDB: 3M66_A 3OPG_A 3MVA_O 3MVB_O 3N7Q_A 3N6S_A.

>PLN03196 MOC1-like protein; Provisional

Probab=100.00  E-value=1.8e-43  Score=357.40  Aligned_cols=302  Identities=19%  Similarity=0.306  Sum_probs=248.5

Q ss_pred             chHHHhHhhcCCCHHHHHhhcccccccCCCChhhHHHhhhhCCCChHHHHHHHHhCCceeccCcCCchhHHHHHHHhCCC
Q 046450           45 PTVSFLTHSCGLSLEKAISVSKLVKIQDTEKPNSSIQLLTSRGFTKPQIATLISKYPRILSHDPEKVLKPKIEYLESLGI  124 (392)
Q Consensus        45 ~~v~~L~~~~Gls~~~~~~i~~~~~~~~~~~~~~~l~~L~~lGl~~~~i~~ll~~~P~lL~~~~~~~l~p~v~fL~~lGl  124 (392)
                      ..++|| .++|++..++.++..  + .+.+.+.++++||+++|++++||.    ++|++|++++++++.|+++||.++|+
T Consensus        65 ~~~~~L-~~lgi~~~~l~~~~~--p-~~~~~~~~~l~~L~s~G~~~~~i~----~~P~iL~~~v~~~l~Pvl~fL~~lG~  136 (487)
T PLN03196         65 KVLDFL-RGIGIDPDELDGLEL--P-STVDVMRERVEFLHKLGLTIEDIN----EYPLVLGCSVKKNMIPVLDYLEKLGV  136 (487)
T ss_pred             HHHHHH-HHcCCCchhhhccCC--C-ccHHHHHHHHHHHHHcCCChHHhc----cCcHHhhcCHhhhhHHHHHHHHHcCC
Confidence            356999 689999999987542  1 334678899999999999999997    79999999999999999999999999


Q ss_pred             CchhHHHhhhcCccccccccccchhhHHHHHHhhccCCchHHHHHhhCcceeccCcccchhhhHHHHHHCCCCchhhhcc
Q 046450          125 SGPDLAKILCPYPELLSRSLENHIIPTFDFLKGVFQANGNLVYALKQSIRVVNSDIQKRVVPNMNTLRAHGVPEPHIARL  204 (392)
Q Consensus       125 s~~~l~~il~~~P~lL~~~~~~~l~p~v~fL~~lg~~~~~i~~il~~~P~lL~~s~~~~l~~~v~~L~~lGv~~~~i~~l  204 (392)
                      +..+|+++|.++|.+|..++++++.|+++||+++|+++++|.+++.++|++|++++++++.++++||+++|+++++|+++
T Consensus       137 s~~~i~~lI~~~P~lL~~sve~~L~P~v~fL~~lGvs~~~i~~~l~r~P~LL~~~~e~~l~p~v~fL~~lGvs~~~i~~i  216 (487)
T PLN03196        137 TRSSLPELLRRYPQVLHASVVVDLAPVVKYLQGLDVKRQDIPRVLERYPELLGFKLEGTMSTSVAYLVSIGVAPRDIGPM  216 (487)
T ss_pred             CHHHHHHHHHhCCceecccHHHHHHHHHHHHHHcCCCHHHHHHHHHhCchhhcCCHHHHHHHHHHHHHHcCCCHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccCCceeeechh-hHHHHHHHHHHhCCCCCchh--HHHHHHHHH-----------------------------------
Q 046450          205 IMLQPPSLVLRAE-LFKNVVDVIKEMGFEPSSKS--FILAVRSMA-----------------------------------  246 (392)
Q Consensus       205 l~~~P~il~~~~~-~~~~~v~~L~~lG~~~~~~~--~~~~~~~~~-----------------------------------  246 (392)
                      +.++|++|+.+.+ +++++++||.++|++.+...  +.+.|.++.                                   
T Consensus       217 l~~~P~iL~~sve~~i~P~v~fL~~lGv~~~~I~~il~~~P~iL~~sle~~lkp~v~~L~elGv~~~~i~~lI~~~P~iL  296 (487)
T PLN03196        217 LTRFPEILGMRVGNNIKPKVDYLESLGLPRLAVARILEKRPYILGFDLEETVKPNVECLLEFGVRKEALPSVIAQYPDIL  296 (487)
T ss_pred             HHhCcHHhhcChhhhHHHHHHHHHHcCCCHHHHHHHHHhCCceeEcCHHHhHHHHHHHHHHcCCCHHHHHHHHHhCCcee
Confidence            9999999999976 69999999999999887431  222222111                                   


Q ss_pred             hc-CHHHHHHHHHHHH-HcCCCHHHHHHHHHhCCccccccHHHHHHHHHHHHHhhCCChhhH----hcCCcccccCCCCc
Q 046450          247 MS-SKATWQRKKEILI-SFGWSEDEFRMVFKRQPLFMMASAKKIRKLMDFFVNKIGLEPSDI----ARYPNLLIGSLEKK  320 (392)
Q Consensus       247 ~~-s~~~l~~kv~fL~-~lG~s~~ei~~~i~~~P~iL~~s~e~L~~~~~fL~~~~G~~~~~i----~~~P~lL~~sle~~  320 (392)
                      .. .++++.++++|+. ++|++.+++..++.++|+++++|.++++++++||.+ +|++.++|    .++|++|+||.+ +
T Consensus       297 ~~s~e~kl~~~~~fL~~~lG~s~e~i~~~v~k~P~il~lSe~kl~~kvefL~~-~Gls~edI~~mv~k~P~lL~~S~~-~  374 (487)
T PLN03196        297 GLDLKAKLAEQQYWLTSKLKIDPEDFGRVIEKLPQIVSLNRNVALKHVEFLRG-RGFSAQDVAKMVVRCPQILALNLE-I  374 (487)
T ss_pred             EecHHHhhhHHHHHHHHhhCCCHHHHHHHHHhcchhhcccHHHHHHHHHHHHH-cCCCHHHHHHHHHhCCceeeccHH-H
Confidence            11 1345666667775 677777777777777888888888888889999987 89998887    589999999985 8


Q ss_pred             cchhHHHHHHHHHcCCCCC-CcccccccccCh-HHHHHHH
Q 046450          321 VLPRWSVLQVLMSKNLLKK-DVNVSLALFVTK-EVFERRF  358 (392)
Q Consensus       321 l~pR~~~l~~L~~~G~~~~-~~~l~~~l~~s~-~~F~~~~  358 (392)
                      |+++++|+  ..++|...+ -+....++++|= ++-..||
T Consensus       375 l~~k~dFl--vneMg~~~~~Iv~fP~~LsySLEkRI~PR~  412 (487)
T PLN03196        375 MKPSLEFF--KKEMKRPLKELVEFPAYFTYGLESRIKPRY  412 (487)
T ss_pred             HHHHHHHH--HHHhCCCHHHHHhChHHhccChhhhhHHHH
Confidence            99998874  345665322 244567777763 3444333

>PF02536 mTERF: mTERF; InterPro: IPR003690 This family currently contains one sequence of known function human mitochondrial transcription termination factor (mTERF), a multizipper protein but binds to DNA as a monomer, with evidence pointing to intramolecular leucine zipper interactions []

Probab=100.00  E-value=1.1e-36  Score=298.56  Aligned_cols=272  Identities=35%  Similarity=0.626  Sum_probs=218.2

Q ss_pred             HhhhhCCCChHHHHHHHHhCCceeccCcCCchhHHHHHHHhCCCCchhHHHhhhcCccccccccccchhhHHHHHHhhcc
Q 046450           81 QLLTSRGFTKPQIATLISKYPRILSHDPEKVLKPKIEYLESLGISGPDLAKILCPYPELLSRSLENHIIPTFDFLKGVFQ  160 (392)
Q Consensus        81 ~~L~~lGl~~~~i~~ll~~~P~lL~~~~~~~l~p~v~fL~~lGls~~~l~~il~~~P~lL~~~~~~~l~p~v~fL~~lg~  160 (392)
                      ++|+++|+++++|.++++++|.++.+++++++.|+++||.++|++..++++++.++|.+|..++++++.|.++||+++|.
T Consensus         2 ~~~~~~gf~~~~i~~~i~~~P~~l~~~~~~~l~pk~~fl~s~G~s~~~i~~il~~~P~il~~s~~~~i~p~~~~L~~~~~   81 (345)
T PF02536_consen    2 DLLKNHGFSDSQISKLIRRYPRLLLCDPEKTLLPKLEFLRSLGFSSSDIAKILSKNPQILSRSLEKNIIPVFDFLKSIGL   81 (345)
T ss_dssp             HHHHHHHHHTS-HHHHHH-H-HHHHT-SS-HHHHHHHHHHHTT--HHHHHHHHHH-GGGGGS--HHHHHHHHHHHTTTSS
T ss_pred             hHHHHcCCCHHHHHHHHHhCCceEEecCccchhHHHHHHHHCCCCHHHHHHHHHhChHHHhccchhhHHHHHHHHHHHcC
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCchHHHHHhhCcceeccCcccchhhhHHHHHHCCCCchhhhcccccCCceeeechhhHHHHHHHHHHhCCCCCchh--H
Q 046450          161 ANGNLVYALKQSIRVVNSDIQKRVVPNMNTLRAHGVPEPHIARLIMLQPPSLVLRAELFKNVVDVIKEMGFEPSSKS--F  238 (392)
Q Consensus       161 ~~~~i~~il~~~P~lL~~s~~~~l~~~v~~L~~lGv~~~~i~~ll~~~P~il~~~~~~~~~~v~~L~~lG~~~~~~~--~  238 (392)
                      +++++.+++.++|++|..+.+.++.+++++|+++|++++.+..++...|..+... +++++.++++.++|+++++..  .
T Consensus        82 s~~d~~~~l~r~p~~l~~~~~~~l~~~v~~L~~lGv~~~~~~~~l~~~~~~~~~~-~~~~~~v~~l~~lG~~~~~~~~vi  160 (345)
T PF02536_consen   82 SDEDIVKVLKRYPRILSFSVEENLSPNVAFLRSLGVPPSQIISLLISRPPLFLSS-EKIKERVEFLKELGFDPEKIGRVI  160 (345)
T ss_dssp             -HHHHHHHHHH-SHHHHS---HHHHHHHHHHHHTT--HHHHHHHHHH-CHHHHS--HHHHCHHHHHCCCTSSHHHHCCCH
T ss_pred             CHHHHHHHHHhcchhhccchHhhhhhhhhHHhhcCCcHHHHHHHHHhcCccccch-hHHHHHHHHHHHhCCCchhhcccc
Confidence            9999999999999999998887899999999999999998888888888876655 899999999999999998753  4


Q ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHcCCCHHHHHHHHHhCCccccccHHH-------------------------------
Q 046450          239 ILAVRSMAMSSKATWQRKKEILISFGWSEDEFRMVFKRQPLFMMASAKK-------------------------------  287 (392)
Q Consensus       239 ~~~~~~~~~~s~~~l~~kv~fL~~lG~s~~ei~~~i~~~P~iL~~s~e~-------------------------------  287 (392)
                      ..+|..+...+++.|+++++||+++|++.+++.+++.++|.++.+|.++                               
T Consensus       161 ~~~P~~l~~~~~~~~~~~v~~L~~~G~~~~~i~~~l~~~P~~l~~s~~~~l~~~~~l~~~~~~~~~~~i~~~p~il~~~~  240 (345)
T PF02536_consen  161 AKNPRLLLSDSESELKPKVEFLRSLGFSKEDIGKLLRKCPRLLSLSVEKILEPVLYLLSSGGVEEERVIKKFPQILSLSE  240 (345)
T ss_dssp             HHHHHHHCGSCCCCCHHHHHHHHHCTT-GHHHHHHHHHTTTGGGCGCHC---------------------------THHH
T ss_pred             cccchhhccccHHHHHHHHHHHHhhcccchhhhHHhhcccceecccccccccccccccccccccccccccccccccccch
Confidence            5667788888899999999999999999999999999999999988864                               


Q ss_pred             --HHHHHHHHHHhhCCChhhH----hcCCcccccCCCCccchhHHHHHHHHHcCCCCCC-cccccccccChH-HHHHH
Q 046450          288 --IRKLMDFFVNKIGLEPSDI----ARYPNLLIGSLEKKVLPRWSVLQVLMSKNLLKKD-VNVSLALFVTKE-VFERR  357 (392)
Q Consensus       288 --L~~~~~fL~~~~G~~~~~i----~~~P~lL~~sle~~l~pR~~~l~~L~~~G~~~~~-~~l~~~l~~s~~-~F~~~  357 (392)
                        +.++++||.+ +|++.++|    .++|++|++|.++ ++++++|+  ..+.|+..++ ...+.++++|=+ +-..|
T Consensus       241 ~~l~~~i~~L~~-lG~s~~ei~~mv~~~P~iL~~s~e~-l~~k~~fl--~~~m~~~~~~i~~~P~~l~~sLe~ri~PR  314 (345)
T PF02536_consen  241 EKLKPKIEFLQS-LGFSEEEIAKMVRRFPQILSYSIEK-LKPKFEFL--VKEMGLPLEEIVEFPQYLSYSLEKRIKPR  314 (345)
T ss_dssp             HHHHHHHHHHHT-TT--HHHHHHHHHHSGGGGGS-HHH-HHHHHHHH--HHCCT--HHHHHHSCHHHCS-HHHHHHHH
T ss_pred             HhHHHHHHHHHH-hcCcHHHHHHHHHhCcchhhcchhh-hhHHHHHH--HHHhCcCHHHHhhCCceeEechhhhhhhH
Confidence              8889999998 99999887    5899999999995 99998874  3456774322 335677777763 34444

The precursors contain a mitochondrial targeting sequence, and the mature mTERF exhibits three leucine zippers, of which one is bipartite, and two widely spaced basic domains. Both basic domains and the three leucine zipper motifs are necessary for DNA binding. The leucine zippers are not implicated in a dimerisation role as in other leucine zippers []. The rest of the family consists of hypothetical proteins none of which have any functional information.; PDB: 3M66_A 3OPG_A 3MVA_O 3MVB_O 3N7Q_A 3N6S_A.

>KOG1267 consensus Mitochondrial transcription termination factor, mTERF [Transcription; General function prediction only]

Probab=99.95  E-value=1.3e-27  Score=239.36  Aligned_cols=285  Identities=25%  Similarity=0.395  Sum_probs=247.4

Q ss_pred             CchHHHhHhhcCCCHHHHHhhcccccccCCCChhhHHHhhhhCCCChHHHHHHHHhCCceeccCcCCchhHHHHHHHhCC
Q 046450           44 SPTVSFLTHSCGLSLEKAISVSKLVKIQDTEKPNSSIQLLTSRGFTKPQIATLISKYPRILSHDPEKVLKPKIEYLESLG  123 (392)
Q Consensus        44 ~~~v~~L~~~~Gls~~~~~~i~~~~~~~~~~~~~~~l~~L~~lGl~~~~i~~ll~~~P~lL~~~~~~~l~p~v~fL~~lG  123 (392)
                      .+++.|+++++|.+...+..+.+.+......++++++++|+++|+++.++..++..+|.++..+.++.+.|+..+|.+.|
T Consensus        59 ~f~~s~~~~s~~~~~~~~~~~~~~~~~~~~~~p~s~~~~l~s~g~~~~~i~s~i~~~p~ll~~~~~~~l~~~~~~l~~~g  138 (413)
T KOG1267|consen   59 NFESSYLVDSLGLSIKLARKLSREVSSEDSVNPSSVLSSLRSLGFTDSQISSIILSSPKLLYLSSENILKPKLRLLDSLG  138 (413)
T ss_pred             CcceeeeccccccchhhHHHHHHHHHhhhccCcHHHHHHHHhcCCchhhcccccccCchhhhccchhhhhhhhhhhhccC
Confidence            57889999999999999999988877777789999999999999999999999999999999999999999999999999


Q ss_pred             CCchhHHHhhhcCccccccccccchhhHHHHHHhhc-----------------------------------cCCchHHH-
Q 046450          124 ISGPDLAKILCPYPELLSRSLENHIIPTFDFLKGVF-----------------------------------QANGNLVY-  167 (392)
Q Consensus       124 ls~~~l~~il~~~P~lL~~~~~~~l~p~v~fL~~lg-----------------------------------~~~~~i~~-  167 (392)
                      ++..++.+++...|.+|+.+.+.++.+.++|+++++                                   ...+++.. 
T Consensus       139 ~~~s~l~~i~s~~~~il~~~~~~~~~~~~~~l~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~~~~~~~lg~~~~~L~~~  218 (413)
T KOG1267|consen  139 LPSSELSSIVSVVPKILLKSKGESLSTFIEFLKSIPPELLSSVVERLLTPVPSFLLNENSVERLDIRRELGVKPRLLKSL  218 (413)
T ss_pred             ccccccchhhhccHHHHHhhcCCchhhHHHHhhccchhhhhhHHHHhccccccccccccccccchhhHHhCCCHHHHHHH
Confidence            999999999999999988777777888888888753                                   22222222 


Q ss_pred             -------------------------------HHhhCcceeccCcccchhhhHHHHHHCCCCchhhhcccccCCceeeech
Q 046450          168 -------------------------------ALKQSIRVVNSDIQKRVVPNMNTLRAHGVPEPHIARLIMLQPPSLVLRA  216 (392)
Q Consensus       168 -------------------------------il~~~P~lL~~s~~~~l~~~v~~L~~lGv~~~~i~~ll~~~P~il~~~~  216 (392)
                                                     ++.+.|.+++++.++++++++++|+++|++.++|..++.++|++++.+.
T Consensus       219 l~~~~~~~~~~~~l~~~~~~i~~~g~~p~~~~~v~~~~~~~~~~~~~i~~kv~~l~~~Gf~~~di~~~~~k~P~~l~~s~  298 (413)
T KOG1267|consen  219 LESQPRPVLLYLKLKARLPFLLTLGFDPKTREFVKAPILLSYSSEKTLEPKVEVLKSLGFSREEIWKMVKKCPQILGYSV  298 (413)
T ss_pred             HhcCccceeeehhhhhhhhhHHHhccCCchhHHHhhhhhhcccccccHHHHHHHHHHcCCCHHHHHHHHHhCchheEeeh
Confidence                                           2334455555578889999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHcCCCHHHHHHHHHhCCccccccHH-HHHHHHHHH
Q 046450          217 ELFKNVVDVIKEMGFEPSSKSFILAVRSMAMSSKATWQRKKEILISFGWSEDEFRMVFKRQPLFMMASAK-KIRKLMDFF  295 (392)
Q Consensus       217 ~~~~~~v~~L~~lG~~~~~~~~~~~~~~~~~~s~~~l~~kv~fL~~lG~s~~ei~~~i~~~P~iL~~s~e-~L~~~~~fL  295 (392)
                      +++..+++++.+.  .++    +...+.++..++..+.++++|+..+|++..++..|+.++|+++.+|++ .++++.+|+
T Consensus       299 ~~~~~~~~~~~~~--~~~----~~k~p~~l~~s~~~l~~~ie~l~~~g~~~~q~~~~~~~~Pq~l~~s~~~~~~~~~~~~  372 (413)
T KOG1267|consen  299 KKNLKTTEYLLKN--PKH----ILKFPQLLRSSEDKLKPRIEFLLSLGFSDVQILEMVKRFPQYLSFSLEKILKRKYEYL  372 (413)
T ss_pred             hhhhHHHHHHHhc--chh----hhhhhhhhhccchhhhhhHHHHHHcCCcHHHHHHHHhhccHHhhhhHHhhhhhhHHHH
Confidence            9888888888765  222    334444458899999999999999999999999999999999999999 899999999


Q ss_pred             HHhhCCChhhHhcCCcccccCCCCccchhHHHHHHHHHc
Q 046450          296 VNKIGLEPSDIARYPNLLIGSLEKKVLPRWSVLQVLMSK  334 (392)
Q Consensus       296 ~~~~G~~~~~i~~~P~lL~~sle~~l~pR~~~l~~L~~~  334 (392)
                      .+.|+++.++++.+|++++|++|.|+.||+.++..+..+
T Consensus       373 ~~~~~~p~~~~~~~p~~~~y~le~ri~pr~~~~~~~~~~  411 (413)
T KOG1267|consen  373 LKGLLRPLSALVSFPAFFGYSLEKRIRPRFNVIKKLGVK  411 (413)
T ss_pred             HHHcCchHHHHhccchhhccchhhcchhHHHHHHHHhcc
Confidence            999999999999999999999999999999987765543

>KOG1267 consensus Mitochondrial transcription termination factor, mTERF [Transcription; General function prediction only]

Probab=99.75  E-value=6.5e-18  Score=169.39  Aligned_cols=210  Identities=25%  Similarity=0.389  Sum_probs=166.8

Q ss_pred             chhHHHHHHHhCCCCchhHHHhhhcCccccccccccchhhHHHHHHhhccCCchHHHHHhhCcceeccCcccchhhhHHH
Q 046450          111 VLKPKIEYLESLGISGPDLAKILCPYPELLSRSLENHIIPTFDFLKGVFQANGNLVYALKQSIRVVNSDIQKRVVPNMNT  190 (392)
Q Consensus       111 ~l~p~v~fL~~lGls~~~l~~il~~~P~lL~~~~~~~l~p~v~fL~~lg~~~~~i~~il~~~P~lL~~s~~~~l~~~v~~  190 (392)
                      +-...+++|++.|++..++.+++..+|.++..+.++.+.|+..+|+..|.+...+.+++...|.+|+.+.+.++.+.++|
T Consensus        90 ~p~s~~~~l~s~g~~~~~i~s~i~~~p~ll~~~~~~~l~~~~~~l~~~g~~~s~l~~i~s~~~~il~~~~~~~~~~~~~~  169 (413)
T KOG1267|consen   90 NPSSVLSSLRSLGFTDSQISSIILSSPKLLYLSSENILKPKLRLLDSLGLPSSELSSIVSVVPKILLKSKGESLSTFIEF  169 (413)
T ss_pred             CcHHHHHHHHhcCCchhhcccccccCchhhhccchhhhhhhhhhhhccCccccccchhhhccHHHHHhhcCCchhhHHHH
Confidence            35677899999999999999999999999999999999999999999999999999999888888876555456666665


Q ss_pred             HHH-----------------------------------CCCCchhhhcccccCCceeeechhhHHHHHHHHHHhCCCCCc
Q 046450          191 LRA-----------------------------------HGVPEPHIARLIMLQPPSLVLRAELFKNVVDVIKEMGFEPSS  235 (392)
Q Consensus       191 L~~-----------------------------------lGv~~~~i~~ll~~~P~il~~~~~~~~~~v~~L~~lG~~~~~  235 (392)
                      +++                                   +|..+.++..++...|+.+.... .+...+.++.++|+++.+
T Consensus       170 l~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~~~~~~~lg~~~~~L~~~l~~~~~~~~~~~-~l~~~~~~i~~~g~~p~~  248 (413)
T KOG1267|consen  170 LKSIPPELLSSVVERLLTPVPSFLLNENSVERLDIRRELGVKPRLLKSLLESQPRPVLLYL-KLKARLPFLLTLGFDPKT  248 (413)
T ss_pred             hhccchhhhhhHHHHhccccccccccccccccchhhHHhCCCHHHHHHHHhcCccceeeeh-hhhhhhhhHHHhccCCch
Confidence            555                                   44555556666666666554433 677788888999999999


Q ss_pred             hhHHHHHHHHHhcCHHHHHHHHHHHHHcCCCHHHHHHHHHhCCccccccHHHHHHHHHHHHHhhCCChhhHhcCCccccc
Q 046450          236 KSFILAVRSMAMSSKATWQRKKEILISFGWSEDEFRMVFKRQPLFMMASAKKIRKLMDFFVNKIGLEPSDIARYPNLLIG  315 (392)
Q Consensus       236 ~~~~~~~~~~~~~s~~~l~~kv~fL~~lG~s~~ei~~~i~~~P~iL~~s~e~L~~~~~fL~~~~G~~~~~i~~~P~lL~~  315 (392)
                      ..++.++..+...+++++++|+++|+++||+.+||..|+.++|++|++|.+++..++.|+.+.    .+++.++|+++.+
T Consensus       249 ~~~v~~~~~~~~~~~~~i~~kv~~l~~~Gf~~~di~~~~~k~P~~l~~s~~~~~~~~~~~~~~----~~~~~k~p~~l~~  324 (413)
T KOG1267|consen  249 REFVKAPILLSYSSEKTLEPKVEVLKSLGFSREEIWKMVKKCPQILGYSVKKNLKTTEYLLKN----PKHILKFPQLLRS  324 (413)
T ss_pred             hHHHhhhhhhcccccccHHHHHHHHHHcCCCHHHHHHHHHhCchheEeehhhhhHHHHHHHhc----chhhhhhhhhhhc
Confidence            889999999999999999999999999999999999999999999999999765555555553    2225555555544


Q ss_pred             CCCCccchhHH
Q 046450          316 SLEKKVLPRWS  326 (392)
Q Consensus       316 sle~~l~pR~~  326 (392)
                      +.. .+.+|++
T Consensus       325 s~~-~l~~~ie  334 (413)
T KOG1267|consen  325 SED-KLKPRIE  334 (413)
T ss_pred             cch-hhhhhHH
Confidence            433 4555544

>smart00733 Mterf Mitochondrial termination factor repeats

Probab=97.18  E-value=0.00035  Score=42.46  Aligned_cols=30  Identities=23%  Similarity=0.522  Sum_probs=26.5

Q ss_pred             HHHHhCCccccccHHHHHHHHHHHHHhhCCC
Q 046450          272 MVFKRQPLFMMASAKKIRKLMDFFVNKIGLE  302 (392)
Q Consensus       272 ~~i~~~P~iL~~s~e~L~~~~~fL~~~~G~~  302 (392)
                      +++.++|.++.++.++++++++||. ++|++
T Consensus         2 ~~~~~~P~il~~~~~~l~~~~~~l~-~~g~~   31 (31)
T smart00733        2 KILKKFPQILGYSEKKLKPKVEFLK-ELGFS   31 (31)
T ss_pred             chhhhCcCcccccHHHhhHHHHHHH-HcCCC
Confidence            4788999999999889999999999 58874

Human mitochondrial termination factor is a DNA-binding protein that acts as a transcription termination factor. Six repeats occur in human mTERF, that also are present in numerous plant proteins.

>smart00733 Mterf Mitochondrial termination factor repeats

Probab=96.85  E-value=0.00064  Score=41.23  Aligned_cols=28  Identities=21%  Similarity=0.427  Sum_probs=12.9

Q ss_pred             HHhhCcceeccCcccchhhhHHHHHHCCC
Q 046450          168 ALKQSIRVVNSDIQKRVVPNMNTLRAHGV  196 (392)
Q Consensus       168 il~~~P~lL~~s~~~~l~~~v~~L~~lGv  196 (392)
                      ++.++|.+|+++ +++++++++||+++|+
T Consensus         3 ~~~~~P~il~~~-~~~l~~~~~~l~~~g~   30 (31)
T smart00733        3 ILKKFPQILGYS-EKKLKPKVEFLKELGF   30 (31)
T ss_pred             hhhhCcCccccc-HHHhhHHHHHHHHcCC
Confidence            344444444444 3334444444444443

Human mitochondrial termination factor is a DNA-binding protein that acts as a transcription termination factor. Six repeats occur in human mTERF, that also are present in numerous plant proteins.

>PF11955 PORR: Plant organelle RNA recognition domain; InterPro: IPR021099 The plant organelle RNA recognition (PORR) domain, previously known as DUF860, is a component of group II intron ribonucleoprotein particles in maize chloroplasts

Probab=92.53  E-value=0.73  Score=44.96  Aligned_cols=226  Identities=16%  Similarity=0.178  Sum_probs=121.6

Q ss_pred             hhhCCCChHHHHHHHHhCCceeccCc---C----CchhHHHHHHH--hCCCCchhHHHhhhcCccccccccccch-hhHH
Q 046450           83 LTSRGFTKPQIATLISKYPRILSHDP---E----KVLKPKIEYLE--SLGISGPDLAKILCPYPELLSRSLENHI-IPTF  152 (392)
Q Consensus        83 L~~lGl~~~~i~~ll~~~P~lL~~~~---~----~~l~p~v~fL~--~lGls~~~l~~il~~~P~lL~~~~~~~l-~p~v  152 (392)
                      -..+|+....+...+.+||.++....   .    -.+.|...-|.  +..+-.+.-..++.+--.+|-++.++.| ..++
T Consensus        44 ~~~L~l~~~~~~~flrkyP~iF~~~~~~~~~~~~~~LT~~a~~L~~eE~~~~~~~e~~~v~rL~KLLMMS~~~rlpL~ki  123 (335)
T PF11955_consen   44 RRQLGLKPRKVSRFLRKYPSIFEVFQHPSRSVPWFRLTPEAEDLLREERRVREEMEPDLVERLRKLLMMSKDRRLPLSKI  123 (335)
T ss_pred             HHhcCCCcccHHHHHHhCCceEEEeccCCCCCceEEeCHHHHHHHHHHHHHHHhChHHHHHHHHHHhccCCCCcccHHHH
Confidence            34689976889999999999886532   1    12334443332  1222111223334444456666665433 2356


Q ss_pred             HHHH-hhccCCchHHHHHhhCcceeccCc---ccchhhhHHHHHHCCCCchhhhccc-------------ccCCcee--e
Q 046450          153 DFLK-GVFQANGNLVYALKQSIRVVNSDI---QKRVVPNMNTLRAHGVPEPHIARLI-------------MLQPPSL--V  213 (392)
Q Consensus       153 ~fL~-~lg~~~~~i~~il~~~P~lL~~s~---~~~l~~~v~~L~~lGv~~~~i~~ll-------------~~~P~il--~  213 (392)
                      ..++ ++|++++-...++.+||..|....   ....-.-+.+=.++.++.-+.....             ..+|--+  +
T Consensus       124 ~~l~~dLGLP~Df~~~lv~~yP~~Frvv~~~~~~~~LeLv~Wd~~LAvs~~E~~~~~~~~~~~~~~~~~~~~Fp~~fp~G  203 (335)
T PF11955_consen  124 AHLRRDLGLPDDFRDSLVPKYPDYFRVVDLEDGGRYLELVSWDPELAVSALEKRAEKEYREKREDGFDRPLAFPVSFPKG  203 (335)
T ss_pred             HHHHHHcCCChhhccchhhhCCCCcEEeecCCCCCEEEEeecCCccCcCccchhhhhccccccccccCCceeeeecCCCC
Confidence            6665 699999988999999999887532   1111122222123444332221110             1122111  1


Q ss_pred             ech-hhHHHHHHHHHHhCC----------CCCchhH-HHHHHH---HHhc--CHHHHHHHHHHHH-HcCCCHHHHHHHHH
Q 046450          214 LRA-ELFKNVVDVIKEMGF----------EPSSKSF-ILAVRS---MAMS--SKATWQRKKEILI-SFGWSEDEFRMVFK  275 (392)
Q Consensus       214 ~~~-~~~~~~v~~L~~lG~----------~~~~~~~-~~~~~~---~~~~--s~~~l~~kv~fL~-~lG~s~~ei~~~i~  275 (392)
                      ... .+..++++-++++-+          ++++..+ .++..+   ++.+  .......++..|+ .+|++ +.+..++.
T Consensus       204 ~~l~k~~~~~l~~fQ~lPy~SPYed~~~l~~~s~~~EKRaVaVlHElLSLTveKr~~~~~L~~fr~ef~lp-~k~~~~l~  282 (335)
T PF11955_consen  204 FRLKKKFREWLEEFQKLPYISPYEDASHLDPGSDEAEKRAVAVLHELLSLTVEKRTEVDHLTHFRKEFGLP-QKFRRLLL  282 (335)
T ss_pred             ccccHHHHHHHHHHhcCCCCCCCCCccCCCCCChHHHhHHHHHHHHHHHhhhhhhccHHHHHHHHHHhCCc-HHHHHHHH
Confidence            222 356677777766543          3333222 234333   2333  3334667788888 89998 57788999


Q ss_pred             hCCccccccHHHHHHHHHHHHHhhCCChhh-HhcCCcc
Q 046450          276 RQPLFMMASAKKIRKLMDFFVNKIGLEPSD-IARYPNL  312 (392)
Q Consensus       276 ~~P~iL~~s~e~L~~~~~fL~~~~G~~~~~-i~~~P~l  312 (392)
                      +||.|+-.|... +.-.=||++  ++..++ |-++|.+
T Consensus       283 rHPgIFYvS~kg-~~~TVfLrE--AY~~~~Liek~Pl~  317 (335)
T PF11955_consen  283 RHPGIFYVSLKG-KRHTVFLRE--AYDGGELIEKHPLV  317 (335)
T ss_pred             hCCCeEEEeccC-CceEEEEee--ccCCCCCCCCCchH
Confidence            999999988761 111224444  444444 3466754

It is required for the splicing of the introns with which it associates, and promotes splicing in the context of a heterodimer with the RNase III-domain protein RNC1. Proteins containing this domain are predicted to localise to mitochondria or chloroplasts []. It seems likely that most PORR proteins function in organellar RNA metabolism [].

>cd04790 HTH_Cfa-like_unk Helix-Turn-Helix DNA binding domain of putative Cfa-like transcription regulators

Probab=90.25  E-value=0.45  Score=41.93  Aligned_cols=48  Identities=21%  Similarity=0.378  Sum_probs=26.8

Q ss_pred             HHHHHHHHHhCCCCCch-hHHHHHHHHHhcCHHHHHHHHHHHHHcCCCHHHHHHH
Q 046450          220 KNVVDVIKEMGFEPSSK-SFILAVRSMAMSSKATWQRKKEILISFGWSEDEFRMV  273 (392)
Q Consensus       220 ~~~v~~L~~lG~~~~~~-~~~~~~~~~~~~s~~~l~~kv~fL~~lG~s~~ei~~~  273 (392)
                      ...++.++.+|+++++. ..-..+..      ..=....+||.++|++.+++..+
T Consensus       119 ~~w~~l~~~~g~~~~~m~~wh~~fe~------~~p~~h~~~l~~~g~~~~~~~~i  167 (172)
T cd04790         119 EKWVAILKAAGMDEADMRRWHIEFEK------MEPEAHQEFLQSLGIPEDEIERI  167 (172)
T ss_pred             HHHHHHHHHcCCChHHHHHHHHHHHH------hCcHHHHHHHHHcCCCHHHHHHH
Confidence            44555556677776541 11111110      01123567999999999998654

Putative helix-turn-helix (HTH) MerR-like transcription regulator; conserved, Cfa-like, unknown proteins (~172 a.a.). The N-terminal domain of these proteins appears to be related to the HTH domain of Cfa, a cyclopropane fatty acid synthase. These Cfa-like proteins have a unique C-terminal domain with conserved histidines (motif HXXFX7HXXF). Based on sequence similarity of the N-terminal domains, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domain

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	392
3mvb_O	343	Crystal Structure Of A Triple Rfy Mutant Of Human M		5e-04

>pdb|3MVB|O Chain O, Crystal Structure Of A Triple Rfy Mutant Of Human Mterf1 Bound To The Termination Sequence Length = 343

Iteration: 1
 Score = 42.0 bits (97), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 56/250 (22%), Positives = 107/250 (42%), Gaps = 17/250 (6%)
Query: 82  LLTSRGFTKPQIATLISKYPRILSHDPEKVLKPKIEYLESLGISGPDLAKILCPYPELLS 141
            L S+G +K  IA++IS+YPR ++  PE  L  + +    +  S  ++  IL   PE   
Sbjct: 57  FLLSKGASKEVIASIISRYPRAITRTPEN-LSKRWDLWRKIVTSDLEIVNILEASPESFF 115
Query: 142 RS-LENHIIPTFDFLKGVFQANGNLVYALKQSIRVVNS--DIQKRVVPNMNTLR---AHG 195
           RS    ++     FL  V      L   L  + R  ++  D+ K++V  +        H 
Sbjct: 116 RSNNNLNLENNIKFLYSVGLTRKCLCRLLTNAPRTFSNSLDLNKQMVEFLQAAGLSLGHN 175
Query: 196 VPEPHIARLIMLQPPSLVLRAELFKNVVDVIKEMGFEPSSKSFILAVRS-----MAMSSK 250
            P   + ++I   P  L+   +  K  ++ ++   F  +S+  ++ +       + +S+ 
Sbjct: 176 DPADFVRKIIFKNPAILIQSTKRVKANIEFLRST-FNLNSEELLVLICGPGAEILDLSND 234
Query: 251 A---TWQRKKEILISFGWSEDEFRMVFKRQPLFMMASAKKIRKLMDFFVNKIGLEPSDIA 307
           A   ++   KE L S G +E+E +      P  +  + KK    +D  + +  +  S I 
Sbjct: 235 AARRSYANIKEKLFSLGCTEEEVQKFVLSYPDVIFLAEKKFNDKIDCLMEE-NISISQII 293
Query: 308 RYPNLLIGSL 317
             P +L  S+
Sbjct: 294 ENPRVLDSSI 303

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	392
3m66_A	270	Mterf3, mterf domain-containing protein 1, mitocho	1e-49
3m66_A	270	Mterf3, mterf domain-containing protein 1, mitocho	7e-12
3mva_O	343	Transcription termination factor, mitochondrial; a	1e-43
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-05

>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A Length = 270

 Score =  167 bits (425), Expect = 1e-49
 Identities = 49/296 (16%), Positives = 99/296 (33%), Gaps = 44/296 (14%)

Query: 76  PNSSIQLLTSRGFTKPQIATLISKYPRILSHDPEKVLKPKIEYLESLGISGPDLAKILCP 135
            + ++Q L   G    +I         +L  D EK +K  + +L+ +GI    L   L  
Sbjct: 5   HSETLQKLVLLGVDLSKIEKHPEAANLLLRLDFEKDIKQMLLFLKDVGIEDNQLGAFLTK 64

Query: 136 YPELLSRSLENHIIPTFDFLKGVFQANGNLVYALKQSIRVVNSDIQKRVVPNMNTLRAHG 195
              + S  LEN                                     +   +  L +  
Sbjct: 65  NHAIFSEDLEN-------------------------------------LKTRVAYLHSKN 87

Query: 196 VPEPHIARLIMLQPPSLVLRAELFKNVVDVIKE---MGFEPSSKSFILAVRSMAMSSKAT 252
             +  +A+++   P  L    E   N +   ++   +  + +    +   R +  S +  
Sbjct: 88  FSKADVAQMVRKAPFLLNFSVERLDNRLGFFQKELELSVKKTRDLVVRLPRLLTGSLEPV 147

Query: 253 WQRKKEILISFGWSEDEFRMVFKRQPLFMMASAKKIRKLMDFFVNKIGLEPSDIARYPNL 312
            +  K   +  G+  +E + +  R P  + A+  K+ +  DF  N + +    I ++P +
Sbjct: 148 KENMKVYRLELGFKHNEIQHMITRIPKMLTANKMKLTETFDFVHNVMSIPHHIIVKFPQV 207

Query: 313 LIGSLEKKVLPRWSVLQVLMSKNLL-KKDVNVSLA--LFVTKEVFERRFVTSYMHE 365
               L  KV  R   L  L        K   +SL   + +  E+F      + + +
Sbjct: 208 FNTRLF-KVKERHLFLTYLGRAQYDPAKPNYISLDKLVSIPDEIFCEEIAKASVQD 262

>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A Length = 270

 Score = 64.5 bits (157), Expect = 7e-12
 Identities = 31/194 (15%), Positives = 56/194 (28%), Gaps = 41/194 (21%)

Query: 45  PTVSFLTHSCGLS---LEKAISVSKLVKIQDTEKPNSSIQLLTSRGFTKPQIATLISKYP 101
             + FL    G+    L   ++ +  +  +D E   + +  L S+ F+K  +A ++ K P
Sbjct: 43  QMLLFL-KDVGIEDNQLGAFLTKNHAIFSEDLENLKTRVAYLHSKNFSKADVAQMVRKAP 101

Query: 102 RILSHDPEKVLKPKIEYLESLGISGPDLAKILCPYPELLSRSLENHIIPTFDFLKGVFQA 161
            +L+   E++      + + L +S      ++   P LL+ SLE                
Sbjct: 102 FLLNFSVERLDNRLGFFQKELELSVKKTRDLVVRLPRLLTGSLE---------------- 145

Query: 162 NGNLVYALKQSIRVVNSDIQKRVVPNMNTLRAHGVPEPHIARLIMLQPPSLVLRAELFKN 221
                                            G     I  +I   P  L         
Sbjct: 146 --------------------PVKENMKVYRLELGFKHNEIQHMITRIPKMLTANKMKLTE 185

Query: 222 VVD-VIKEMGFEPS 234
             D V   M     
Sbjct: 186 TFDFVHNVMSIPHH 199

>3mva_O Transcription termination factor, mitochondrial; all alpha-helix, protein-DNA, transcription factor, terminat mitochondria; 2.20A {Homo sapiens} PDB: 3n6s_A* 3mvb_O 3n7q_A* Length = 343

 Score =  154 bits (390), Expect = 1e-43
 Identities = 66/342 (19%), Positives = 133/342 (38%), Gaps = 23/342 (6%)

Query: 31  PSVNSISKPSDERSPTVSFLTHSCGLSLEKAISVSKLVKIQDTEKPNSSIQLLTSRGFTK 90
              ++      +    +  L  + G+ ++ A      V  +           L S+G +K
Sbjct: 7   VKCHNTDSEPLKNEDLLKNL-LTMGVDIDMARKRQPGVFHRMITNEQDLKMFLLSKGASK 65

Query: 91  PQIATLISKYPRILSHDPEKVLKPKIEYLESLGISGPDLAKILCPYPELLSRSLENH-II 149
             IA++IS+YPR ++  PE  L  + +    +  S  ++  IL   PE   RS  N  + 
Sbjct: 66  EVIASIISRYPRAITRTPEN-LSKRWDLWRKIVTSDLEIVNILERSPESFFRSNNNLNLE 124

Query: 150 PTFDFLKGVFQANGNLVYALKQSIRVVNSDIQKRVVPNMNTLRAHGVPEPH------IAR 203
               FL  V      L   L  + R  ++ +       +  L+A G+   H      + +
Sbjct: 125 NNIKFLYSVGLTRKCLCRLLTNAPRTFSNSLDL-NKQMVEFLQAAGLSLGHNDPADFVRK 183

Query: 204 LIMLQPPSLVLRAELFKNVVDVIKEMGFEPSSKSFILAVRSMAM-------SSKATWQRK 256
           +I   P  L+   +  K  ++ ++      S +  +L     A         ++ ++   
Sbjct: 184 IIFKNPFILIQSTKRVKANIEFLRSTFNLNSEELLVLICGPGAEILDLSNDYARRSYANI 243

Query: 257 KEILISFGWSEDEFRMVFKRQPLFMMASAKKIRKLMDFFVNKIGLEPSDIARYPNLLIGS 316
           KE L S G +E+E +      P  +  + KK    +D  + +  +  S I   P +L  S
Sbjct: 244 KEKLFSLGCTEEEVQKFVLSYPDVIFLAEKKFNDKIDCLMEE-NISISQIIENPRVLDSS 302

Query: 317 LEKKVLPRWSVLQVLMSKNLLKKDVNVSLALFVTKEVFERRF 358
           +   +  R   ++ L++       +N++L L  +K+ +E + 
Sbjct: 303 IS-TLKSR---IKELVNAGCNLSTLNITL-LSWSKKRYEAKL 339

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 45.6 bits (107), Expect = 2e-05
 Identities = 60/394 (15%), Positives = 122/394 (30%), Gaps = 114/394 (28%)

Query: 2   FSLICKTLIEKPGSIDLKISYARNLKTIIPSVNSISKPSDERSPTVSFLTHSCGLSLEKA 61
           F+L CK L+          +  + +   + +  +     D  S T   LT     SL   
Sbjct: 262 FNLSCKILL---------TTRFKQVTDFLSAATTTHISLDHHSMT---LTPDEVKSL--- 306

Query: 62  ISVSKLVKIQDTEKPNSSIQ---LLTSRGFTKPQIATLISKYP------RILSHDP-EKV 111
             + K +  +  + P   +       S       IA  I          + ++ D    +
Sbjct: 307 --LLKYLDCRPQDLPREVLTTNPRRLS------IIAESIRDGLATWDNWKHVNCDKLTTI 358

Query: 112 LKPKIEYLESLGISGPDLAKILCPYPELLSRSLENHIIPTFDFLKGVFQANGNL---VYA 168
           ++  +  LE      P   + +  +  L                  VF  + ++   + +
Sbjct: 359 IESSLNVLE------PAEYRKM--FDRL-----------------SVFPPSAHIPTILLS 393

Query: 169 L-------KQSIRVVNSDIQKRVV---PNMNTLRAHGVPEPHIARLIMLQPPSLVLRAEL 218
           L          + VVN   +  +V   P  +T+         I   + ++  +      L
Sbjct: 394 LIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIP-----SIYLELKVKLEN---EYAL 445

Query: 219 FKNVVD-VIKEMGFEPSSK----------SFI---LAVRSMAMSSKATWQRKKEILISFG 264
            +++VD       F+              S I   L  +++    + T  R   + + F 
Sbjct: 446 HRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHL--KNIEHPERMTLFRM--VFLDFR 501

Query: 265 WSEDEFRMVFKRQPLFMMASAKKIRKLMDF--FVNKIGLEPSDIARYPNLLIGSLEKKVL 322
           + E + R           AS   +  L     +   I     D       L+ ++    L
Sbjct: 502 FLEQKIR----HDSTAWNASGSILNTLQQLKFYKPYI----CDNDPKYERLVNAIL-DFL 552

Query: 323 PRWSVLQVLMSKNLLKKDVNVSLALFV-TKEVFE 355
           P+     ++ SK     D+ + +AL    + +FE
Sbjct: 553 PKIEE-NLICSKYT---DL-LRIALMAEDEAIFE 581

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	392
3mva_O	343	Transcription termination factor, mitochondrial; a	100.0
3m66_A	270	Mterf3, mterf domain-containing protein 1, mitocho	100.0
4fp9_B	335	Mterf domain-containing protein 2; modification en	100.0
3mva_O	343	Transcription termination factor, mitochondrial; a	100.0
3m66_A	270	Mterf3, mterf domain-containing protein 1, mitocho	100.0
4fp9_B	335	Mterf domain-containing protein 2; modification en	99.94
4fzv_B	239	Mterf domain-containing protein 2; mterf fold, met	99.2
4fzv_B	239	Mterf domain-containing protein 2; mterf fold, met	98.49
1oqy_A	368	HHR23A, UV excision repair protein RAD23 homolog A	86.85
4ae4_A	118	Ubiquitin-associated protein 1; protein transport,	86.15
3ff5_A	54	PEX14P, peroxisomal biogenesis factor 14; protein	83.53
1oqy_A	368	HHR23A, UV excision repair protein RAD23 homolog A	81.63

>3mva_O Transcription termination factor, mitochondrial; all alpha-helix, protein-DNA, transcription factor, terminat mitochondria; 2.20A {Homo sapiens} PDB: 3n6s_A* 3mvb_O 3n7q_A*

Probab=100.00  E-value=1.6e-52  Score=408.58  Aligned_cols=309  Identities=18%  Similarity=0.235  Sum_probs=276.8

Q ss_pred             CCCCchHHHhHhhcCCCHHHHHhhcccccccCCCChhhHHHhhhhCCCChHHHHHHHHhCCceeccCcCCchhHHHHHHH
Q 046450           41 DERSPTVSFLTHSCGLSLEKAISVSKLVKIQDTEKPNSSIQLLTSRGFTKPQIATLISKYPRILSHDPEKVLKPKIEYLE  120 (392)
Q Consensus        41 ~~~~~~v~~L~~~~Gls~~~~~~i~~~~~~~~~~~~~~~l~~L~~lGl~~~~i~~ll~~~P~lL~~~~~~~l~p~v~fL~  120 (392)
                      .++..+|+|| .+||++.++|.++.+++++.++++++++++||+++|++++++++++.++|.+|.++++ ++.|+++||+
T Consensus        17 ~~~~~~v~~L-~s~Gl~~~~~~~~~p~l~~~s~~~~~~vl~fL~~~G~s~~~i~~iv~~~P~lL~~~~~-~l~p~l~fL~   94 (343)
T 3mva_O           17 LKNEDLLKNL-LTMGVDIDMARKRQPGVFHRMITNEQDLKMFLLSKGASKEVIASIISRYPRAITRTPE-NLSKRWDLWR   94 (343)
T ss_dssp             ---CCHHHHH-HHHTCCHHHHHHHCGGGGGCSCCCHHHHHHHHHHTTCCHHHHHHHHHHCGGGGGCCHH-HHHHHHHHHT
T ss_pred             cccHHHHHHH-HHcCCCHHHHHHhCchhhccCcccHHHHHHHHHHcCCCHHHHHHHHHhCcHHHhCCHH-HHHHHHHHHH
Confidence            3455788999 7999999999999999988889999999999999999999999999999999999976 6999999999


Q ss_pred             hCCCCchhHHHhhhcCccc-cccccccchhhHHHHHHhhccCCchHHHHHhhCcceeccCcccchhhhHHHHHHCCCC--
Q 046450          121 SLGISGPDLAKILCPYPEL-LSRSLENHIIPTFDFLKGVFQANGNLVYALKQSIRVVNSDIQKRVVPNMNTLRAHGVP--  197 (392)
Q Consensus       121 ~lGls~~~l~~il~~~P~l-L~~~~~~~l~p~v~fL~~lg~~~~~i~~il~~~P~lL~~s~~~~l~~~v~~L~~lGv~--  197 (392)
                      ++|++++++++++.++|++ ++.+.++++.|+++||+++|++.++|.+++.++|++|++++++ +++++++|+++|++  
T Consensus        95 ~lG~s~~~i~~il~~~P~iLl~s~~~~~l~p~v~fL~~lGl~~~~i~~ll~~~P~il~~~~e~-~~~~v~~L~~lgv~~g  173 (343)
T 3mva_O           95 KIVTSDLEIVNILERSPESFFRSNNNLNLENNIKFLYSVGLTRKCLCRLLTNAPRTFSNSLDL-NKQMVEFLQAAGLSLG  173 (343)
T ss_dssp             TTSSCHHHHHHHHHHCSHHHHSCCCHHHHHHHHHHHHHTTCCHHHHHHHHHHCGGGGTSCHHH-HHHHHHHHHHHHHHTT
T ss_pred             HcCCCHHHHHHHHHHCCHHHhCCChHhhHHHHHHHHHHhCCCHHHHHHHHHhCChhheeCHHH-hhHHHHHHHHhCCCcC
Confidence            9999999999999999995 5554435899999999999999999999999999999999998 59999999987764  


Q ss_pred             ----chhhhcccccCCceeeechhhHHHHHHHHH-HhCCCCCchh--HHHHHHHHHhcCHHHHHHHHHHHH----HcCCC
Q 046450          198 ----EPHIARLIMLQPPSLVLRAELFKNVVDVIK-EMGFEPSSKS--FILAVRSMAMSSKATWQRKKEILI----SFGWS  266 (392)
Q Consensus       198 ----~~~i~~ll~~~P~il~~~~~~~~~~v~~L~-~lG~~~~~~~--~~~~~~~~~~~s~~~l~~kv~fL~----~lG~s  266 (392)
                          .+.|.+++.++|.+++.+.++++++++||+ ++|+++++..  +..-++.++..+.+.|+++++|+.    ++||+
T Consensus       174 ~~~p~~~I~~il~~~P~iL~~s~~~i~~~v~fL~~~~G~~~~~~~~~i~~~~~~~l~~s~~~l~~~~~~l~e~~~~lG~s  253 (343)
T 3mva_O          174 HNDPADFVRKIIFKNPFILIQSTKRVKANIEFLRSTFNLNSEELLVLICGPGAEILDLSNDYARRSYANIKEKLFSLGCT  253 (343)
T ss_dssp             CSCHHHHHHHHHHHCGGGGGSCHHHHHHHHHHHHHHSCCCHHHHHHHHHTTTGGGGGCCTTHHHHHHHHHHHHHHTTTCC
T ss_pred             CCcHHHHHHHHHHhCChHhcCCHHHHHHHHHHHHHHcCCCHHHHHHHHhcCChHHhhccHHHHHHHHHHHHHHHHHcCCC
Confidence                678999999999999999889999999999 5999986532  112233456677888999997776    69999


Q ss_pred             HHHHHHHHHhCCccccccHHHHHHHHHHHHHhhCCChhhHhcCCcccccCCCCccchhHHHHHHHHHcCCCCCCcccc--
Q 046450          267 EDEFRMVFKRQPLFMMASAKKIRKLMDFFVNKIGLEPSDIARYPNLLIGSLEKKVLPRWSVLQVLMSKNLLKKDVNVS--  344 (392)
Q Consensus       267 ~~ei~~~i~~~P~iL~~s~e~L~~~~~fL~~~~G~~~~~i~~~P~lL~~sle~~l~pR~~~l~~L~~~G~~~~~~~l~--  344 (392)
                      .+|+..|+.++|++|++|.++|+++++||.+ ||++.++|+++|++|+||+| ||+|||.   +|.++|+   ++++.  
T Consensus       254 ~~ev~~~v~~~P~il~~s~~~l~~k~~fl~~-mg~~~~~i~~~P~~l~~sle-ri~~R~~---~L~~~g~---~~~~~~~  325 (343)
T 3mva_O          254 EEEVQKFVLSYPDVIFLAEKKFNDKIDCLME-ENISISQIIENPRVLDSSIS-TLKSRIK---ELVNAGC---NLSTLNI  325 (343)
T ss_dssp             HHHHHHHHHTCGGGGGSCHHHHHHHHHHHHT-TTCCHHHHHHSGGGGGSCHH-HHHHHHH---HHHTTTC---CSSSSCG
T ss_pred             HHHHHHHHHhCCchhcccHHHHHHHHHHHHH-cCCCHHHHHhCCHHHhcCHH-HHHHHHH---HHHHCCC---CCCCCcc
Confidence            9999999999999999999999999999999 99999999999999999999 9999995   6889998   55666  


Q ss_pred             cccccChHHHHHHHhc
Q 046450          345 LALFVTKEVFERRFVT  360 (392)
Q Consensus       345 ~~l~~s~~~F~~~~v~  360 (392)
                      ++|++||++|.++|.+
T Consensus       326 ~~l~~s~~~F~~~~~~  341 (343)
T 3mva_O          326 TLLSWSKKRYEAKLKK  341 (343)
T ss_dssp             GGGGSCHHHHHHHHHH
T ss_pred             hhhcCCHHHHHHHHhc
Confidence            9999999999999964

>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A

Probab=100.00  E-value=9e-48  Score=363.18  Aligned_cols=259  Identities=17%  Similarity=0.269  Sum_probs=238.9

Q ss_pred             hhHHHhhhhCCCChHHHHHHHHhCCceeccCcCCchhHHHHHHHhCCCCchhHHHhhhcCccccccccccchhhHHHHHH
Q 046450           77 NSSIQLLTSRGFTKPQIATLISKYPRILSHDPEKVLKPKIEYLESLGISGPDLAKILCPYPELLSRSLENHIIPTFDFLK  156 (392)
Q Consensus        77 ~~~l~~L~~lGl~~~~i~~ll~~~P~lL~~~~~~~l~p~v~fL~~lGls~~~l~~il~~~P~lL~~~~~~~l~p~v~fL~  156 (392)
                      .+++++|.++|++.+++.+....+|.+|.+++++++.|+++||.++|++++++++++.++|++|++++++ +.|+++||+
T Consensus         6 s~~l~~L~~lGv~~~~i~k~p~~~p~lL~~~~~~~l~~~l~fL~~lG~~~~~i~~il~~~P~lL~~~~e~-l~p~v~~L~   84 (270)
T 3m66_A            6 SETLQKLVLLGVDLSKIEKHPEAANLLLRLDFEKDIKQMLLFLKDVGIEDNQLGAFLTKNHAIFSEDLEN-LKTRVAYLH   84 (270)
T ss_dssp             HHHHHHHHHTTCCHHHHTTSHHHHHHHHTCCHHHHTHHHHHHHHHHTCCGGGHHHHHHHCTTGGGSCHHH-HHHHHHHHH
T ss_pred             hHHHHHHHHcCCCHHHHhhccchhhhhhccChhhhHHHHHHHHHHcCCCHHHHHHHHHhCChhhhCCHHH-HHHHHHHHH
Confidence            4789999999999999987777777779999998999999999999999999999999999999999996 999999999


Q ss_pred             hhccCCchHHHHHhhCcceeccCcccchhhhHHHH-HHCCCCchhhhcccccCCceeeechhhHHHHHHHHHHhCCCCCc
Q 046450          157 GVFQANGNLVYALKQSIRVVNSDIQKRVVPNMNTL-RAHGVPEPHIARLIMLQPPSLVLRAELFKNVVDVIKEMGFEPSS  235 (392)
Q Consensus       157 ~lg~~~~~i~~il~~~P~lL~~s~~~~l~~~v~~L-~~lGv~~~~i~~ll~~~P~il~~~~~~~~~~v~~L~~lG~~~~~  235 (392)
                      ++|+++++|.+++.++|++|++++++ ++++++|| +++|++.+++.+++.++|++++.+.+                  
T Consensus        85 ~~Gls~~~i~~~l~~~P~lL~~s~~~-l~~~v~~L~~~lG~~~~~i~~ll~~~P~il~~s~e------------------  145 (270)
T 3m66_A           85 SKNFSKADVAQMVRKAPFLLNFSVER-LDNRLGFFQKELELSVKKTRDLVVRLPRLLTGSLE------------------  145 (270)
T ss_dssp             HTTCCHHHHHHHHHHSTTGGGSCHHH-HHHHHHHHHHHHCCCHHHHHHHHHHSGGGGTSCSH------------------
T ss_pred             HcCCCHHHHHHHHHhCCHHHcCCHHH-HHHHHHHHHHHhCCCHHHHHHHHHhCCcceeechH------------------
Confidence            99999999999999999999999996 99999999 58999999999999999999987654                  


Q ss_pred             hhHHHHHHHHHhcCHHHHHHHHHHHH-HcCCCHHHHHHHHHhCCccccccHHHHHHHHHHHHHhhCCChhhHhcCCcccc
Q 046450          236 KSFILAVRSMAMSSKATWQRKKEILI-SFGWSEDEFRMVFKRQPLFMMASAKKIRKLMDFFVNKIGLEPSDIARYPNLLI  314 (392)
Q Consensus       236 ~~~~~~~~~~~~~s~~~l~~kv~fL~-~lG~s~~ei~~~i~~~P~iL~~s~e~L~~~~~fL~~~~G~~~~~i~~~P~lL~  314 (392)
                                      .++++++++. ++||+.+||.+|+.++|+++++|.++++++++||.++||++.++|+++|++|+
T Consensus       146 ----------------~~~~~v~~l~~~~G~s~~ei~~~v~~~P~il~~s~~~l~~k~~fL~~~mg~~~~~i~~~P~~l~  209 (270)
T 3m66_A          146 ----------------PVKENMKVYRLELGFKHNEIQHMITRIPKMLTANKMKLTETFDFVHNVMSIPHHIIVKFPQVFN  209 (270)
T ss_dssp             ----------------HHHHHHHHHHHTSCCCHHHHHHHHHHCGGGGTSCHHHHHHHHHHHHTTSCCCHHHHHHCGGGGG
T ss_pred             ----------------HHHHHHHHHHHHcCCCHHHHHHHHHhCChhheecHHHHHHHHHHHHHHhCCCHHHHHhCchHhh
Confidence                            3456777664 89999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCccchhHHHHHHHHHcCCCCCC---cccccccccChHHHHHHHhccCCCChHHHHHHhcc
Q 046450          315 GSLEKKVLPRWSVLQVLMSKNLLKKD---VNVSLALFVTKEVFERRFVTSYMHEPEVMTAYQGG  375 (392)
Q Consensus       315 ~sle~~l~pR~~~l~~L~~~G~~~~~---~~l~~~l~~s~~~F~~~~v~~~~e~~~~~~~y~~~  375 (392)
                      ||+| ||+|||.++++|.++|+.+++   +++.+++.+||++|+++|++.++|+   .++|.++
T Consensus       210 ~Sle-ri~pR~~~l~~L~~~g~~~~~~~~~~L~~~l~~sd~~F~~~~~~~~~ee---y~~f~k~  269 (270)
T 3m66_A          210 TRLF-KVKERHLFLTYLGRAQYDPAKPNYISLDKLVSIPDEIFCEEIAKASVQD---FEKFLKT  269 (270)
T ss_dssp             SCHH-HHHHHHHHHHHHTCCCCCTTSSSCCCHHHHHHSCHHHHHHHTTCSCHHH---HHHHHTT
T ss_pred             CCHH-HHHHHHHHHHHhhccCCCCCCCCCCCHHHHhcCCHHHHHHHHhcCCHHH---HHHHHhc
Confidence            9999 999999999999999997654   6677899999999999999999665   6666553

>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}

Probab=100.00  E-value=1.7e-35  Score=284.68  Aligned_cols=221  Identities=14%  Similarity=0.166  Sum_probs=187.9

Q ss_pred             hhHHHHHHHhCCCCchhHHHhhhcCccccccccccchhhHHHHHHhhccCCchHHHHHhhCcceeccCcccchhhhHHHH
Q 046450          112 LKPKIEYLESLGISGPDLAKILCPYPELLSRSLENHIIPTFDFLKGVFQANGNLVYALKQSIRVVNSDIQKRVVPNMNTL  191 (392)
Q Consensus       112 l~p~v~fL~~lGls~~~l~~il~~~P~lL~~~~~~~l~p~v~fL~~lg~~~~~i~~il~~~P~lL~~s~~~~l~~~v~~L  191 (392)
                      +...+..|.++|+++++|++++..+|.++..    ++.+.+.||..+|++.++|+++|.++|++|++++++ ++++++||
T Consensus        46 ~e~~l~~L~d~Gfs~~~i~~il~~~P~il~~----~l~~~i~~L~~LGls~e~V~kiL~k~P~lL~~s~e~-L~~~l~fL  120 (335)
T 4fp9_B           46 LERVMSSLLDMGFSNAHINELLSVRRGASLQ----QLLDIISEFILLGLNPEPVCVVLKKSPQLLKLPIMQ-MRKRSSYL  120 (335)
T ss_dssp             HHHHHHHHHHTTCCHHHHHHHHHHCSSCCHH----HHHHHHHHHHHTTCCHHHHHHHHHHCGGGGGSCHHH-HHHHHHHH
T ss_pred             HHHHHHHHHHCCCCHHHHHHHHHhCcccchh----HHHHHHHHHHHcCCCHHHHHHHHHhChhhccCCHHH-HHHHHHHH
Confidence            5667778888888888888888888888753    567888888888988888999999999999888875 99999999


Q ss_pred             HHCCCCchhhhcccccCCceeeechhhHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHH-HcCCCHHHH
Q 046450          192 RAHGVPEPHIARLIMLQPPSLVLRAELFKNVVDVIKEMGFEPSSKSFILAVRSMAMSSKATWQRKKEILI-SFGWSEDEF  270 (392)
Q Consensus       192 ~~lGv~~~~i~~ll~~~P~il~~~~~~~~~~v~~L~~lG~~~~~~~~~~~~~~~~~~s~~~l~~kv~fL~-~lG~s~~ei  270 (392)
                      +++|++.+++.+++.++|++|+.+.+                                  .+..++.+|. ++||+.++|
T Consensus       121 ~~lGl~~~~i~~ll~~~P~lL~~s~e----------------------------------~i~~~v~~L~~~lGfS~~ev  166 (335)
T 4fp9_B          121 QKLGLGEGKLKRVLYCCPEIFTMRQQ----------------------------------DINDTVRLLKEKCLFTVQQV  166 (335)
T ss_dssp             HHTTCTTTTHHHHHHHCGGGGTSCHH----------------------------------HHHHHHHHHHHTSCCCHHHH
T ss_pred             HHcCCCHHHHHHHHHhCchhhccChH----------------------------------HHHHHHHHHHHHcCCCHHHH
Confidence            88999998999999999988876644                                  4455666776 899999999


Q ss_pred             HHHHHhCCccccccHHHHHHHHHHHHHhhCCChhhHhcCCcccccCCCCccchhHHHHHHHHHcCCCC----------CC
Q 046450          271 RMVFKRQPLFMMASAKKIRKLMDFFVNKIGLEPSDIARYPNLLIGSLEKKVLPRWSVLQVLMSKNLLK----------KD  340 (392)
Q Consensus       271 ~~~i~~~P~iL~~s~e~L~~~~~fL~~~~G~~~~~i~~~P~lL~~sle~~l~pR~~~l~~L~~~G~~~----------~~  340 (392)
                      ..||.++|+||.+|.++|+++++||.++||+++++|++ |++|+||++ ||+|||.+   |...|..+          .+
T Consensus       167 ~~mv~r~P~lL~~S~e~L~~K~efLv~~Mgl~~~eIvk-P~~l~ySLe-RIkpRH~f---L~~lG~~q~~~~k~~~~~~n  241 (335)
T 4fp9_B          167 TKILHSCPSVLREDLGQLEYKFQYAYFRMGIKHPDIVK-SEYLQYSLT-KIKQRHIY---LERLGRYQTPDKKGQTQIPN  241 (335)
T ss_dssp             HHHHHHCGGGGTSCHHHHHHHHHHHHTTTCCCHHHHHH-TTGGGSCHH-HHHHHHHH---HHHHTSCCCCCSSSCCSSCC
T ss_pred             HHHHHhCChhhhCCHHHHHHHHHHHHHHhCCCHHHccc-cchhhccHH-HHHHHHHH---HHHcCCccCCCcccccCCCC
Confidence            99999999999999999999999999999999999997 999999999 99999986   55556532          35


Q ss_pred             cccccccccChHHHHHHHhccCCCC-hHHHHHHhccc
Q 046450          341 VNVSLALFVTKEVFERRFVTSYMHE-PEVMTAYQGGL  376 (392)
Q Consensus       341 ~~l~~~l~~s~~~F~~~~v~~~~e~-~~~~~~y~~~~  376 (392)
                      +++..++..||++|+.++++.+.++ ..+.+.+.+..
T Consensus       242 psL~~il~~sd~~F~~~vA~~s~eey~~F~k~~~~e~  278 (335)
T 4fp9_B          242 PLLKDILRVSEAEFLARTACTSVEEFQVFKKLLAREE  278 (335)
T ss_dssp             CCHHHHTTSCHHHHHHHTSCCCHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHcCCHHHHHHHHHhcCHHHHHHHHHHHHhhh
Confidence            6799999999999999999999877 66666665433

>3mva_O Transcription termination factor, mitochondrial; all alpha-helix, protein-DNA, transcription factor, terminat mitochondria; 2.20A {Homo sapiens} PDB: 3n6s_A* 3mvb_O 3n7q_A*

Probab=100.00  E-value=5.7e-35  Score=284.56  Aligned_cols=276  Identities=17%  Similarity=0.247  Sum_probs=234.8

Q ss_pred             CChhhHHHhhhhCCCChHHHHHHHHhCCceeccCcCCchhHHHHHHHhCCCCchhHHHhhhcCccccccccccchhhHHH
Q 046450           74 EKPNSSIQLLTSRGFTKPQIATLISKYPRILSHDPEKVLKPKIEYLESLGISGPDLAKILCPYPELLSRSLENHIIPTFD  153 (392)
Q Consensus        74 ~~~~~~l~~L~~lGl~~~~i~~ll~~~P~lL~~~~~~~l~p~v~fL~~lGls~~~l~~il~~~P~lL~~~~~~~l~p~v~  153 (392)
                      ...++++++|.++|++.+   +++.++|+++..++++ ..+.++||+++|++.+++++++.++|.+|+++.+ ++.|+++
T Consensus        17 ~~~~~~v~~L~s~Gl~~~---~~~~~~p~l~~~s~~~-~~~vl~fL~~~G~s~~~i~~iv~~~P~lL~~~~~-~l~p~l~   91 (343)
T 3mva_O           17 LKNEDLLKNLLTMGVDID---MARKRQPGVFHRMITN-EQDLKMFLLSKGASKEVIASIISRYPRAITRTPE-NLSKRWD   91 (343)
T ss_dssp             ---CCHHHHHHHHTCCHH---HHHHHCGGGGGCSCCC-HHHHHHHHHHTTCCHHHHHHHHHHCGGGGGCCHH-HHHHHHH
T ss_pred             cccHHHHHHHHHcCCCHH---HHHHhCchhhccCccc-HHHHHHHHHHcCCCHHHHHHHHHhCcHHHhCCHH-HHHHHHH
Confidence            456789999999999955   4577899999999875 8999999999999999999999999999999965 8999999


Q ss_pred             HHHhhccCCchHHHHHhhCcce-eccCcccchhhhHHHHHHCCCCchhhhcccccCCceeeechhhHHHHHHHHHHhCCC
Q 046450          154 FLKGVFQANGNLVYALKQSIRV-VNSDIQKRVVPNMNTLRAHGVPEPHIARLIMLQPPSLVLRAELFKNVVDVIKEMGFE  232 (392)
Q Consensus       154 fL~~lg~~~~~i~~il~~~P~l-L~~s~~~~l~~~v~~L~~lGv~~~~i~~ll~~~P~il~~~~~~~~~~v~~L~~lG~~  232 (392)
                      ||+++|++++++.+++.++|++ ++.+.++++.|+++||+++|++.++|++++.++|++++.+.+++++++++++++|++
T Consensus        92 fL~~lG~s~~~i~~il~~~P~iLl~s~~~~~l~p~v~fL~~lGl~~~~i~~ll~~~P~il~~~~e~~~~~v~~L~~lgv~  171 (343)
T 3mva_O           92 LWRKIVTSDLEIVNILERSPESFFRSNNNLNLENNIKFLYSVGLTRKCLCRLLTNAPRTFSNSLDLNKQMVEFLQAAGLS  171 (343)
T ss_dssp             HHTTTSSCHHHHHHHHHHCSHHHHSCCCHHHHHHHHHHHHHTTCCHHHHHHHHHHCGGGGTSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHcCCCHHHHHHHHHHCCHHHhCCChHhhHHHHHHHHHHhCCCHHHHHHHHHhCChhheeCHHHhhHHHHHHHHhCCC
Confidence            9999999999999999999994 555544479999999999999999999999999999999999889999999988875


Q ss_pred             CCc---hh----HHHHHHHHHhcCHHHHHHHHHHHH-HcCCCHHHHHHHHHhCC-ccccccHHHHHHHHHHHHH---hhC
Q 046450          233 PSS---KS----FILAVRSMAMSSKATWQRKKEILI-SFGWSEDEFRMVFKRQP-LFMMASAKKIRKLMDFFVN---KIG  300 (392)
Q Consensus       233 ~~~---~~----~~~~~~~~~~~s~~~l~~kv~fL~-~lG~s~~ei~~~i~~~P-~iL~~s~e~L~~~~~fL~~---~~G  300 (392)
                      .+.   ..    ++...+.++..++++++++++||+ ++|++.+++..++.+.| .++.++.+.++++++|+.+   ++|
T Consensus       172 ~g~~~p~~~I~~il~~~P~iL~~s~~~i~~~v~fL~~~~G~~~~~~~~~i~~~~~~~l~~s~~~l~~~~~~l~e~~~~lG  251 (343)
T 3mva_O          172 LGHNDPADFVRKIIFKNPFILIQSTKRVKANIEFLRSTFNLNSEELLVLICGPGAEILDLSNDYARRSYANIKEKLFSLG  251 (343)
T ss_dssp             TTCSCHHHHHHHHHHHCGGGGGSCHHHHHHHHHHHHHHSCCCHHHHHHHHHTTTGGGGGCCTTHHHHHHHHHHHHHHTTT
T ss_pred             cCCCcHHHHHHHHHHhCChHhcCCHHHHHHHHHHHHHHcCCCHHHHHHHHhcCChHHhhccHHHHHHHHHHHHHHHHHcC
Confidence            331   11    222334456677999999999999 69999999999999865 7999999999999999987   689


Q ss_pred             CChhhH----hcCCcccccCCCCccchhHHHHHHHHHcCCCCCC-cccccccccChHHHHHHH
Q 046450          301 LEPSDI----ARYPNLLIGSLEKKVLPRWSVLQVLMSKNLLKKD-VNVSLALFVTKEVFERRF  358 (392)
Q Consensus       301 ~~~~~i----~~~P~lL~~sle~~l~pR~~~l~~L~~~G~~~~~-~~l~~~l~~s~~~F~~~~  358 (392)
                      ++.+++    .++|.+|++|.+ +|++++++   |...|+...+ ...+.++.+|-++-..|+
T Consensus       252 ~s~~ev~~~v~~~P~il~~s~~-~l~~k~~f---l~~mg~~~~~i~~~P~~l~~sleri~~R~  310 (343)
T 3mva_O          252 CTEEEVQKFVLSYPDVIFLAEK-KFNDKIDC---LMEENISISQIIENPRVLDSSISTLKSRI  310 (343)
T ss_dssp             CCHHHHHHHHHTCGGGGGSCHH-HHHHHHHH---HHTTTCCHHHHHHSGGGGGSCHHHHHHHH
T ss_pred             CCHHHHHHHHHhCCchhcccHH-HHHHHHHH---HHHcCCCHHHHHhCCHHHhcCHHHHHHHH
Confidence            999886    699999999999 59999876   5558885432 345788888877766665

>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A

Probab=100.00  E-value=5.1e-33  Score=262.20  Aligned_cols=212  Identities=19%  Similarity=0.250  Sum_probs=192.2

Q ss_pred             CchHHHhHhhcCCCHHHHHhhccc----ccccCCCChhhHHHhhhhCCCChHHHHHHHHhCCceeccCcCCchhHHHHHH
Q 046450           44 SPTVSFLTHSCGLSLEKAISVSKL----VKIQDTEKPNSSIQLLTSRGFTKPQIATLISKYPRILSHDPEKVLKPKIEYL  119 (392)
Q Consensus        44 ~~~v~~L~~~~Gls~~~~~~i~~~----~~~~~~~~~~~~l~~L~~lGl~~~~i~~ll~~~P~lL~~~~~~~l~p~v~fL  119 (392)
                      +.+++||. ++|++.+++.+....    +.++...++.++++||+++|++++++++++.++|.+|.+++++ +.|+++||
T Consensus         6 s~~l~~L~-~lGv~~~~i~k~p~~~p~lL~~~~~~~l~~~l~fL~~lG~~~~~i~~il~~~P~lL~~~~e~-l~p~v~~L   83 (270)
T 3m66_A            6 SETLQKLV-LLGVDLSKIEKHPEAANLLLRLDFEKDIKQMLLFLKDVGIEDNQLGAFLTKNHAIFSEDLEN-LKTRVAYL   83 (270)
T ss_dssp             HHHHHHHH-HTTCCHHHHTTSHHHHHHHHTCCHHHHTHHHHHHHHHHTCCGGGHHHHHHHCTTGGGSCHHH-HHHHHHHH
T ss_pred             hHHHHHHH-HcCCCHHHHhhccchhhhhhccChhhhHHHHHHHHHHcCCCHHHHHHHHHhCChhhhCCHHH-HHHHHHHH
Confidence            46889995 899999999886433    2344446899999999999999999999999999999999998 99999999


Q ss_pred             HhCCCCchhHHHhhhcCccccccccccchhhHHHHH-HhhccCCchHHHHHhhCcceeccCcccchhhhHHHH-HHCCCC
Q 046450          120 ESLGISGPDLAKILCPYPELLSRSLENHIIPTFDFL-KGVFQANGNLVYALKQSIRVVNSDIQKRVVPNMNTL-RAHGVP  197 (392)
Q Consensus       120 ~~lGls~~~l~~il~~~P~lL~~~~~~~l~p~v~fL-~~lg~~~~~i~~il~~~P~lL~~s~~~~l~~~v~~L-~~lGv~  197 (392)
                      +++|++.+++++++.++|++|+++++ ++.|+++|| +++|++.+++.+++.++|.+++++.+. ++++++++ +++|++
T Consensus        84 ~~~Gls~~~i~~~l~~~P~lL~~s~~-~l~~~v~~L~~~lG~~~~~i~~ll~~~P~il~~s~e~-~~~~v~~l~~~~G~s  161 (270)
T 3m66_A           84 HSKNFSKADVAQMVRKAPFLLNFSVE-RLDNRLGFFQKELELSVKKTRDLVVRLPRLLTGSLEP-VKENMKVYRLELGFK  161 (270)
T ss_dssp             HHTTCCHHHHHHHHHHSTTGGGSCHH-HHHHHHHHHHHHHCCCHHHHHHHHHHSGGGGTSCSHH-HHHHHHHHHHTSCCC
T ss_pred             HHcCCCHHHHHHHHHhCCHHHcCCHH-HHHHHHHHHHHHhCCCHHHHHHHHHhCCcceeechHH-HHHHHHHHHHHcCCC
Confidence            99999999999999999999999998 599999999 589999999999999999999999986 99999976 689999


Q ss_pred             chhhhcccccCCceeeechhhHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHH-HcCCCHHHHHHHHHh
Q 046450          198 EPHIARLIMLQPPSLVLRAELFKNVVDVIKEMGFEPSSKSFILAVRSMAMSSKATWQRKKEILI-SFGWSEDEFRMVFKR  276 (392)
Q Consensus       198 ~~~i~~ll~~~P~il~~~~~~~~~~v~~L~~lG~~~~~~~~~~~~~~~~~~s~~~l~~kv~fL~-~lG~s~~ei~~~i~~  276 (392)
                      .++|.+++.++|.+++.+.                                  +++++|++||. ++|++.++|    .+
T Consensus       162 ~~ei~~~v~~~P~il~~s~----------------------------------~~l~~k~~fL~~~mg~~~~~i----~~  203 (270)
T 3m66_A          162 HNEIQHMITRIPKMLTANK----------------------------------MKLTETFDFVHNVMSIPHHII----VK  203 (270)
T ss_dssp             HHHHHHHHHHCGGGGTSCH----------------------------------HHHHHHHHHHHTTSCCCHHHH----HH
T ss_pred             HHHHHHHHHhCChhheecH----------------------------------HHHHHHHHHHHHHhCCCHHHH----Hh
Confidence            9999999999999987654                                  56677888887 799999886    49


Q ss_pred             CCccccccHHHHHHHHHHHHH
Q 046450          277 QPLFMMASAKKIRKLMDFFVN  297 (392)
Q Consensus       277 ~P~iL~~s~e~L~~~~~fL~~  297 (392)
                      +|++|++|.|+|+|++.|+..
T Consensus       204 ~P~~l~~Sleri~pR~~~l~~  224 (270)
T 3m66_A          204 FPQVFNTRLFKVKERHLFLTY  224 (270)
T ss_dssp             CGGGGGSCHHHHHHHHHHHHH
T ss_pred             CchHhhCCHHHHHHHHHHHHH
Confidence            999999999999999999987

>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}

Probab=99.94  E-value=2.8e-26  Score=220.59  Aligned_cols=182  Identities=15%  Similarity=0.183  Sum_probs=168.1

Q ss_pred             ChhhHHHhhhhCCCChHHHHHHHHhCCceeccCcCCchhHHHHHHHhCCCCchhHHHhhhcCccccccccccchhhHHHH
Q 046450           75 KPNSSIQLLTSRGFTKPQIATLISKYPRILSHDPEKVLKPKIEYLESLGISGPDLAKILCPYPELLSRSLENHIIPTFDF  154 (392)
Q Consensus        75 ~~~~~l~~L~~lGl~~~~i~~ll~~~P~lL~~~~~~~l~p~v~fL~~lGls~~~l~~il~~~P~lL~~~~~~~l~p~v~f  154 (392)
                      +++.++..|.++||++++|++++..+|.++..    ++.+++.||.++|++.++|.++|.++|++|+.+++ +|.|+++|
T Consensus        45 ~~e~~l~~L~d~Gfs~~~i~~il~~~P~il~~----~l~~~i~~L~~LGls~e~V~kiL~k~P~lL~~s~e-~L~~~l~f  119 (335)
T 4fp9_B           45 ELERVMSSLLDMGFSNAHINELLSVRRGASLQ----QLLDIISEFILLGLNPEPVCVVLKKSPQLLKLPIM-QMRKRSSY  119 (335)
T ss_dssp             HHHHHHHHHHHTTCCHHHHHHHHHHCSSCCHH----HHHHHHHHHHHTTCCHHHHHHHHHHCGGGGGSCHH-HHHHHHHH
T ss_pred             cHHHHHHHHHHCCCCHHHHHHHHHhCcccchh----HHHHHHHHHHHcCCCHHHHHHHHHhChhhccCCHH-HHHHHHHH
Confidence            56788999999999999999999999999754    48899999999999999999999999999999997 79999999


Q ss_pred             HHhhccCCchHHHHHhhCcceeccCcccchhhhHHHHH-HCCCCchhhhcccccCCceeeechhhHHHHHHHHHHhCCCC
Q 046450          155 LKGVFQANGNLVYALKQSIRVVNSDIQKRVVPNMNTLR-AHGVPEPHIARLIMLQPPSLVLRAELFKNVVDVIKEMGFEP  233 (392)
Q Consensus       155 L~~lg~~~~~i~~il~~~P~lL~~s~~~~l~~~v~~L~-~lGv~~~~i~~ll~~~P~il~~~~~~~~~~v~~L~~lG~~~  233 (392)
                      |+++|++.+++.+++.++|++|+++.+. +..++.+|+ ++|++.++|..|+.++|.+|..+                  
T Consensus       120 L~~lGl~~~~i~~ll~~~P~lL~~s~e~-i~~~v~~L~~~lGfS~~ev~~mv~r~P~lL~~S------------------  180 (335)
T 4fp9_B          120 LQKLGLGEGKLKRVLYCCPEIFTMRQQD-INDTVRLLKEKCLFTVQQVTKILHSCPSVLRED------------------  180 (335)
T ss_dssp             HHHTTCTTTTHHHHHHHCGGGGTSCHHH-HHHHHHHHHHTSCCCHHHHHHHHHHCGGGGTSC------------------
T ss_pred             HHHcCCCHHHHHHHHHhCchhhccChHH-HHHHHHHHHHHcCCCHHHHHHHHHhCChhhhCC------------------
Confidence            9999999999999999999999999986 999999996 69999999999999999999765                  


Q ss_pred             CchhHHHHHHHHHhcCHHHHHHHHHHHH-HcCCCHHHHHHHHHhCCccccccHHHHHHHHHHHHHhhCCC
Q 046450          234 SSKSFILAVRSMAMSSKATWQRKKEILI-SFGWSEDEFRMVFKRQPLFMMASAKKIRKLMDFFVNKIGLE  302 (392)
Q Consensus       234 ~~~~~~~~~~~~~~~s~~~l~~kv~fL~-~lG~s~~ei~~~i~~~P~iL~~s~e~L~~~~~fL~~~~G~~  302 (392)
                                      .+++++|++||. +||++.++|.    + |++|+||.++|+++..||.. +|.-
T Consensus       181 ----------------~e~L~~K~efLv~~Mgl~~~eIv----k-P~~l~ySLeRIkpRH~fL~~-lG~~  228 (335)
T 4fp9_B          181 ----------------LGQLEYKFQYAYFRMGIKHPDIV----K-SEYLQYSLTKIKQRHIYLER-LGRY  228 (335)
T ss_dssp             ----------------HHHHHHHHHHHHTTTCCCHHHHH----H-TTGGGSCHHHHHHHHHHHHH-HTSC
T ss_pred             ----------------HHHHHHHHHHHHHHhCCCHHHcc----c-cchhhccHHHHHHHHHHHHH-cCCc
Confidence                            456778889998 8999999985    3 99999999999999999998 8873

>4fzv_B Mterf domain-containing protein 2; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens}

Probab=99.20  E-value=1.3e-10  Score=95.94  Aligned_cols=181  Identities=15%  Similarity=0.184  Sum_probs=136.7

Q ss_pred             hhhHHHHHHhhccCCchHHHHHhhCcceeccCcccchhhhHHHHHHCCCCchhhhcccccCCceeeechhhHHHHHHHHH
Q 046450          148 IIPTFDFLKGVFQANGNLVYALKQSIRVVNSDIQKRVVPNMNTLRAHGVPEPHIARLIMLQPPSLVLRAELFKNVVDVIK  227 (392)
Q Consensus       148 l~p~v~fL~~lg~~~~~i~~il~~~P~lL~~s~~~~l~~~v~~L~~lGv~~~~i~~ll~~~P~il~~~~~~~~~~v~~L~  227 (392)
                      +...+.-+--+|+.++-++-++.+.|+++...+.. ++.+-.+|+.+|+.+..+.+++--||.++.+....+        
T Consensus        33 lldiisefillglnpepvcvvlkkspqllklpimq-mrkrssylqklglgegklkrvlyccpeiftmrqqdi--------  103 (239)
T 4fzv_B           33 LLDIISEFILLGLNPEPVCVVLKKSPQLLKLPIMQ-MRKRSSYLQKLGLGEGKLKRVLYCCPEIFTMRQQDI--------  103 (239)
T ss_dssp             TTHHHHHHHHHCCCTTHHHHHHHSCGGGGTSCHHH-HHHHHHHHHHHTTCSSCCHHHHHHCGGGGTSCHHHH--------
T ss_pred             HHHHHHHHHhhcCCCCceEEEecCCHHHhcChHHH-HHHHHHHHHHhCCCccchhhheecCcHHHHHHHhhH--------
Confidence            33344455556777777777777777777777665 777777777777777777777777777776654333        


Q ss_pred             HhCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHH-HcCCCHHHHHHHHHhCCccccccHHHHHHHHHHHHHhhCCChhhH
Q 046450          228 EMGFEPSSKSFILAVRSMAMSSKATWQRKKEILI-SFGWSEDEFRMVFKRQPLFMMASAKKIRKLMDFFVNKIGLEPSDI  306 (392)
Q Consensus       228 ~lG~~~~~~~~~~~~~~~~~~s~~~l~~kv~fL~-~lG~s~~ei~~~i~~~P~iL~~s~e~L~~~~~fL~~~~G~~~~~i  306 (392)
                                                ...+..|+ ++-|+.+++.+++..||.++.-+...++-++.|-.-.||...-+|
T Consensus       104 --------------------------ndtvrllkekclftvqqvtkilhscpsvlredlgqleykfqyayfrmgikhpdi  157 (239)
T 4fzv_B          104 --------------------------NDTVRLLKEKCLFTVQQVTKILHSCPSVLREDLGQLEYKFQYAYFRMGIKHPDI  157 (239)
T ss_dssp             --------------------------HHHHHHHHHHSCCCHHHHHHHHHHCGGGGTSCTTHHHHHHHHHHHTSCCCHHHH
T ss_pred             --------------------------hHHHHHHHHhHHhhHHHHHHHHHhCcHHHHHHHhhhhhhHhHHHHHccCCCcch
Confidence                                      34455666 688999999999999999999999999999888887899999999


Q ss_pred             hcCCcccccCCCCccchhHHHHHHHHH------cCCC-CCCcccccccccChHHHHHHHhccCCCC
Q 046450          307 ARYPNLLIGSLEKKVLPRWSVLQVLMS------KNLL-KKDVNVSLALFVTKEVFERRFVTSYMHE  365 (392)
Q Consensus       307 ~~~P~lL~~sle~~l~pR~~~l~~L~~------~G~~-~~~~~l~~~l~~s~~~F~~~~v~~~~e~  365 (392)
                      ++ ..+|.||+. .|+.||-|++.|-.      +|-. ..++-+.+++..|+.+|..+-....-|+
T Consensus       158 vk-seylqyslt-kikqrhiylerlgryqtpdkkgqtqipnpllkdilrvseaeflartactsvee  221 (239)
T 4fzv_B          158 VK-SEYLQYSLT-KIKQRHIYLERLGRYQTPDKKGQTQIPNPLLKDILRVSEAEFLARTACTSVEE  221 (239)
T ss_dssp             HH-TTGGGSCHH-HHHHHHHHHHHHTCCCCCCSSSCCSSCCCCHHHHHTSCHHHHHHHTSCSCHHH
T ss_pred             hH-HHHHHHHHH-HHHHHHhHHHHhcccCCCCccCCccCCChHHHHHHHHhHHHHHHHHhcccHHH
Confidence            87 479999999 79999987655422      1211 1245578999999999999987776554

>4fzv_B Mterf domain-containing protein 2; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens}

Probab=98.49  E-value=9e-07  Score=73.05  Aligned_cols=148  Identities=15%  Similarity=0.185  Sum_probs=100.6

Q ss_pred             hhHHHHHHHhCCCCchhHHHhhhcCccccccccccchhhHHHHHHhhccCCchHHHHHhhCcceeccCcccchhhhHHHH
Q 046450          112 LKPKIEYLESLGISGPDLAKILCPYPELLSRSLENHIIPTFDFLKGVFQANGNLVYALKQSIRVVNSDIQKRVVPNMNTL  191 (392)
Q Consensus       112 l~p~v~fL~~lGls~~~l~~il~~~P~lL~~~~~~~l~p~v~fL~~lg~~~~~i~~il~~~P~lL~~s~~~~l~~~v~~L  191 (392)
                      +...+.-+.-+|+.++-+.-++.+.|++|..++. .+..+-.||+.+|+....+.+++-.||.++++...+ +...+..|
T Consensus        33 lldiisefillglnpepvcvvlkkspqllklpim-qmrkrssylqklglgegklkrvlyccpeiftmrqqd-indtvrll  110 (239)
T 4fzv_B           33 LLDIISEFILLGLNPEPVCVVLKKSPQLLKLPIM-QMRKRSSYLQKLGLGEGKLKRVLYCCPEIFTMRQQD-INDTVRLL  110 (239)
T ss_dssp             TTHHHHHHHHHCCCTTHHHHHHHSCGGGGTSCHH-HHHHHHHHHHHHTTCSSCCHHHHHHCGGGGTSCHHH-HHHHHHHH
T ss_pred             HHHHHHHHHhhcCCCCceEEEecCCHHHhcChHH-HHHHHHHHHHHhCCCccchhhheecCcHHHHHHHhh-HhHHHHHH
Confidence            4444445555677777777777777777777765 577777777777777777777777777777777654 77777777


Q ss_pred             HH-CCCCchhhhcccccCCceeeechhhHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHH-HcCCCHHH
Q 046450          192 RA-HGVPEPHIARLIMLQPPSLVLRAELFKNVVDVIKEMGFEPSSKSFILAVRSMAMSSKATWQRKKEILI-SFGWSEDE  269 (392)
Q Consensus       192 ~~-lGv~~~~i~~ll~~~P~il~~~~~~~~~~v~~L~~lG~~~~~~~~~~~~~~~~~~s~~~l~~kv~fL~-~lG~s~~e  269 (392)
                      ++ |-++-.++.+++..||.++.-+...++-                                  |+.|-- ++|+...+
T Consensus       111 kekclftvqqvtkilhscpsvlredlgqley----------------------------------kfqyayfrmgikhpd  156 (239)
T 4fzv_B          111 KEKCLFTVQQVTKILHSCPSVLREDLGQLEY----------------------------------KFQYAYFRMGIKHPD  156 (239)
T ss_dssp             HHHSCCCHHHHHHHHHHCGGGGTSCTTHHHH----------------------------------HHHHHHHTSCCCHHH
T ss_pred             HHhHHhhHHHHHHHHHhCcHHHHHHHhhhhh----------------------------------hHhHHHHHccCCCcc
Confidence            75 7777777777777777777554443333                                  333333 56766666


Q ss_pred             HHHHHHhCCccccccHHHHHHHHHHHHHhhCC
Q 046450          270 FRMVFKRQPLFMMASAKKIRKLMDFFVNKIGL  301 (392)
Q Consensus       270 i~~~i~~~P~iL~~s~e~L~~~~~fL~~~~G~  301 (392)
                      |.     ....+.||..+++.+--||.. +|.
T Consensus       157 iv-----kseylqysltkikqrhiyler-lgr  182 (239)
T 4fzv_B          157 IV-----KSEYLQYSLTKIKQRHIYLER-LGR  182 (239)
T ss_dssp             HH-----HTTGGGSCHHHHHHHHHHHHH-HTC
T ss_pred             hh-----HHHHHHHHHHHHHHHHhHHHH-hcc
Confidence            53     235677888888888888876 664

>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A

Probab=86.85  E-value=0.62  Score=44.80  Aligned_cols=36  Identities=19%  Similarity=0.358  Sum_probs=21.2

Q ss_pred             hHHHhhhcCccccccccccchhhHHHHHHhhccCCchHHHHHhhCcc
Q 046450          128 DLAKILCPYPELLSRSLENHIIPTFDFLKGVFQANGNLVYALKQSIR  174 (392)
Q Consensus       128 ~l~~il~~~P~lL~~~~~~~l~p~v~fL~~lg~~~~~i~~il~~~P~  174 (392)
                      ++..+|..+|.+|..           +|+.+|-+.-++..+|..+|.
T Consensus       248 ~lR~~vq~nP~~l~~-----------~lq~l~~~nP~l~~~I~~n~~  283 (368)
T 1oqy_A          248 NMRQVIQQNPALLPA-----------LLQQLGQENPQLLQQISRHQE  283 (368)
T ss_dssp             HHHHSTTTCTTHHHH-----------HHTTTTTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHhChHHHHH-----------HHHHHHhhCHHHHHHHHHCHH
Confidence            456666666665432           455566666666666665554

>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*

Probab=86.15  E-value=1.6  Score=34.78  Aligned_cols=102  Identities=13%  Similarity=0.117  Sum_probs=67.2

Q ss_pred             CCCCchHHHhHhhcCCCHHHHHhhcccccccCCCChhhHHHhhh------hCCCChHHHHHHHHhCCceeccCcCCchhH
Q 046450           41 DERSPTVSFLTHSCGLSLEKAISVSKLVKIQDTEKPNSSIQLLT------SRGFTKPQIATLISKYPRILSHDPEKVLKP  114 (392)
Q Consensus        41 ~~~~~~v~~L~~~~Gls~~~~~~i~~~~~~~~~~~~~~~l~~L~------~lGl~~~~i~~ll~~~P~lL~~~~~~~l~p  114 (392)
                      ++....|..|+ ++||+...+.++.....    ++.+..++||-      +.|+++.++...+..+..--.. .. .-..
T Consensus         6 ~~e~~~v~~l~-~MGFp~~~~~kAl~~~g----~~~e~amewL~~h~~L~d~~~d~~~~e~~l~~~~~~~~~-~~-~~~~   78 (118)
T 4ae4_A            6 PSERQCVETVV-NMGYSYECVLRAMKAAG----ANIEQILDYLFAHGQLCEKGFDPLLVEEALEMHQCSEEK-MM-EFLQ   78 (118)
T ss_dssp             HHHHHHHHHHH-HTTCCHHHHHHHHHHHC----SCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHCSSCHHH-HH-HHHH
T ss_pred             HHHHHHHHHHH-HcCCCHHHHHHHHHHHC----cCHHHHHHHHHHhchhcccCCChhhhHHHHHhccCCccc-cc-cCHH
Confidence            33445677885 78999999998865422    26777777775      4688888887777654211000 00 1224


Q ss_pred             HHHHHHhCCCCchhHHHhhhcCccccccccccchhhHHHHHHh
Q 046450          115 KIEYLESLGISGPDLAKILCPYPELLSRSLENHIIPTFDFLKG  157 (392)
Q Consensus       115 ~v~fL~~lGls~~~l~~il~~~P~lL~~~~~~~l~p~v~fL~~  157 (392)
                      .+.-|.++|++.+.+.+.+..+.        +++...++||..
T Consensus        79 ~v~~L~eMGF~~~~a~~AL~~~~--------nd~erAlewL~~  113 (118)
T 4ae4_A           79 LMSKFKEMGFELKDIKEVLLLHN--------NDQDNALEDLMA  113 (118)
T ss_dssp             HHHHHHHTTCCHHHHHHHHHHTT--------TCHHHHHHHHHH
T ss_pred             HHHHHHHcCCCHHHHHHHHHHcC--------CCHHHHHHHHHH
Confidence            57788899999988888886543        367777777754

>3ff5_A PEX14P, peroxisomal biogenesis factor 14; protein import, peroxin, 3 helices bundle, protein transport; HET: DPW; 1.80A {Rattus norvegicus}

Probab=83.53  E-value=1.9  Score=29.20  Aligned_cols=20  Identities=10%  Similarity=0.393  Sum_probs=8.6

Q ss_pred             HHHHHHHhCCCCchhHHHhh
Q 046450          114 PKIEYLESLGISGPDLAKIL  133 (392)
Q Consensus       114 p~v~fL~~lGls~~~l~~il  133 (392)
                      .+++||++.|++.++|...+
T Consensus        32 ~K~~FL~sKGLt~~EI~~Al   51 (54)
T 3ff5_A           32 TRRAFLKKKGLTDEEIDLAF   51 (54)
T ss_dssp             HHHHHHHHTTCCHHHHHHHH
T ss_pred             HHHHHHHHcCCCHHHHHHHH
Confidence            34444444444444444333

>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A

Probab=81.63  E-value=0.91  Score=43.59  Aligned_cols=148  Identities=16%  Similarity=0.267  Sum_probs=73.6

Q ss_pred             hHHHhHhhcCCCHHHHHhhcccccccCCCChhhHHHhhhhCCCChH------------------------HHHHHHHhCC
Q 046450           46 TVSFLTHSCGLSLEKAISVSKLVKIQDTEKPNSSIQLLTSRGFTKP------------------------QIATLISKYP  101 (392)
Q Consensus        46 ~v~~L~~~~Gls~~~~~~i~~~~~~~~~~~~~~~l~~L~~lGl~~~------------------------~i~~ll~~~P  101 (392)
                      +|.-|+ ++||+++++.++.+.    +.++++..++||-+ |+.+.                        +--..++.+|
T Consensus       171 ~i~~l~-~MGf~~~~~~~AL~a----~~nn~~~A~e~L~~-gip~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~~p  244 (368)
T 1oqy_A          171 MLTEIM-SMGYERERVVAALRA----SYNNPHRAVEYLLT-GIPGSPEPEHGSVQESQVSEQPATEAAGENPLEFLRDQP  244 (368)
T ss_dssp             HHHHHH-TTTCCSHHHHHHHHH----SCSSTTHHHHTTTT-SSTTCSSCCCCCCCCCCSSCCCCSSCCSCCTTHHHHHSH
T ss_pred             HHHHHH-HcCCCHHHHHHHHHH----cCCCHHHHHHHHHh-CCCcccccccCCccccccccccCccccccchHHHHhcCh
Confidence            577885 789999999998653    22467777888853 33321                        0012233333


Q ss_pred             ce------eccCcCCchhHHHHHHHhCCCCchhHHHhhhcCccccccccccchhhHHHHHHhhc---cCCchHHHHHhhC
Q 046450          102 RI------LSHDPEKVLKPKIEYLESLGISGPDLAKILCPYPELLSRSLENHIIPTFDFLKGVF---QANGNLVYALKQS  172 (392)
Q Consensus       102 ~l------L~~~~~~~l~p~v~fL~~lGls~~~l~~il~~~P~lL~~~~~~~l~p~v~fL~~lg---~~~~~i~~il~~~  172 (392)
                      ++      +..+|+- |.   .+|+.+|-+..++..+|..+|.-+..-+......-    .+.+   .....+... .-.
T Consensus       245 qf~~lR~~vq~nP~~-l~---~~lq~l~~~nP~l~~~I~~n~~~Fl~~l~e~~~~~----~~~~~~~~~~~~~~~~-~~~  315 (368)
T 1oqy_A          245 QFQNMRQVIQQNPAL-LP---ALLQQLGQENPQLLQQISRHQEQFIQMLNEPPGEL----ADISDVEGEVGAIGEE-APQ  315 (368)
T ss_dssp             HHHHHHHSTTTCTTH-HH---HHHTTTTTTCHHHHHHHHHHHHHHHHHHHSCCCCS----CSSCCCSSSSCCCSCC-CTT
T ss_pred             HHHHHHHHHHhChHH-HH---HHHHHHHhhCHHHHHHHHHCHHHHHHHHcCccccc----cccccccccccccccc-CCc
Confidence            21      2222221 11   35556788888888888888763221111000000    0000   000000000 001


Q ss_pred             cceeccCcccchhhhHHHHHHCCCCchhhhcccccCCc
Q 046450          173 IRVVNSDIQKRVVPNMNTLRAHGVPEPHIARLIMLQPP  210 (392)
Q Consensus       173 P~lL~~s~~~~l~~~v~~L~~lGv~~~~i~~ll~~~P~  210 (392)
                      +..+..+.+  =+..|+.|.++|++...+.+.+..|-.
T Consensus       316 ~~~i~~t~e--e~eaI~rL~~mGF~~~~a~~al~a~~~  351 (368)
T 1oqy_A          316 MNYIQVTPQ--EKEAIERLKALGFPESLVIQAYFACEK  351 (368)
T ss_dssp             CSSCCCCTT--THHHHHHHHHHTCCSHHHHHHTSSSSS
T ss_pred             cccccCCCc--CHHHHHHHHHcCCCHHHHHHHHHHcCC
Confidence            122233332  246778888889998888777766653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00