Citrus Sinensis ID: 046453

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-----
Protein Sequence
MIQGARVQLNGWQQVAVAVGSAVGALLDPRRADLIAALGETTGRPAFESVLQRMKRSPEGRAVLLERPRVIYEKVGHAWDLPPNTFGAAYASFMGSRNFSPDDRPPVRFMDTDELAYVAMRAREVHDFWHTLFGLPTNLIGESALKVIEFQQMYLPMCFLSVIGGSARFSEKQRKLFFQHYFPWAIRAGMRSTDLMCVYYEQHFHEDLEDLRKKWGIVPAPAAPV
Secondary Structure (PSIPRED)
ccccccccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHcccHHHHHHHHHHHccHHHHHHHHcccccccccHHHHHccccccHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHccccHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHccHHHHHHHccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccHHHHHHHHHHHHHHHHHccccccHEEEEcccccHHHHHHHHHHHHccHcHHHHHHcccccccccHHHHHHcccccHHHHHHHHHHHccccccccccEEEcccHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHccccHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcccccccHHEEEHHHHHHccHHHHHHHccccccccccc
Coil and Loop (DISEMBL)
MIQGARVQLNGWQQVAVAVGSAVGALLDPRRADLIAALGETTGRPAFESVLQRMKRSPEGRAVLLERPRVIYekvghawdlppntFGAAYASFmgsrnfspddrppvrfmdtDELAYVAMRAREVHDFWHTlfglptnligeSALKVIEFQQMYlpmcflsviggsarfsEKQRKLFFQHYFpwairagmrsTDLMCVYYEQHFHEDLEDLRKkwgivpapaapv
Flexible Loop (DISEMBL)
MIQGARVQLNGWQQVAVAVGSAVGALLDPRRADLIAALgettgrpafesvlqrmkrspegravllerPRVIYEkvghawdlppNTFGAAYASFMGSRNFSPDDRPPVRFMDTDELAYVAMRAREVHDFWHTLFGLPTNLIGESALKVIEFQQMYLPMCFLSVIGGSARFSEKQRKLFFQHYFPWAIRAGMRSTDLMCVYYEQHFHEDLEDLRKKWGIVPAPAAPV
Low Complexity Region (SEG)
MIQGARVQLNGWQQvavavgsavgaLLDPRRADLIAALGETTGRPAFESVLQRMKRSPEGRAVLLERPRVIYEKVGHAWDLPPNTFGAAYASFMGSRNFSPDDRPPVRFMDTDELAYVAMRAREVHDFWHTLFGLPTNLIGESALKVIEFQQMYLPMCFLSVIGGSARFSEKQRKLFFQHYFPWAIRAGMRSTDLMCVYYEQHFHEDLEDLRKKWGIVPAPAAPV
Disordered region (IsUnstruct)
******VQLNGWQQVAVAVGSAVGALLDPRRADLIAALGETTG*****************RAVLLERPRVIYEKVGHAWDLPPNTFGAAYASFMGS**********VRFMDTDELAYVAMRAREVHDFWHTLFGLPTNLIGESALKVIEFQQMYLPMCFLSVIGGSARFSEKQRKLFFQHYFPWAIRAGMRSTDLMCVYYEQHFHEDLEDLRKKWGIV*******
Disordered Region (DISOPRED)
*IQGARVQLNGWQQVAVAVGSAVGALLDPRRADLIAALGETTGRPAFESVLQRMKRSPEGRAVLLERPRVIYEKVGHAWDLPPNTFGAAYASFMGSRNFSPDDRPPVRFMDTDELAYVAMRAREVHDFWHTLFGLPTNLIGESALKVIEFQQMYLPMCFLSVIGGSARFSEKQRKLFFQHYFPWAIRAGMRSTDLMCVYYEQHFHEDLEDLRKKWGIVPAP****
Disordered Region (DISEMBL)
MIQGARVQLNGWQQVAVAVGSAVGALLDPRRADLIAALGETTGRPAFESVLQRMKRSPEGRAVLLERPRVIYEKVGHAWDLPPNTFGAAYASFMGSRNFSPDDRPPVRFMDTDELAYVAMRAREVHDFWHTLFGLPTNLIGESALKVIEFQQMYLPMCFLSVIGGSARFSEKQRKLFFQHYFPWAIRAGMRSTDLMCVYYEQHFHEDLEDLRKKWGIVPAPAAPV
Disordered Region (DISPRO)
****ARVQLNGWQQVAVAVGSAVGALLDPRRADLIAALGETTGRPAFESVLQRMKRSPEGRAVLLERPRVIYEKVGHAWDLPPNTFGAAYASFMGSRNFSPDDRPPVRFMDTDELAYVAMRAREVHDFWHTLFGLPTNLIGESALKVIEFQQMYLPMCFLSVIGGSARFSEKQRKLFFQHYFPWAIRAGMRSTDLMCVYYEQHFHEDLEDLRKKWGIVPAPA***
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MIQGARVQLNGWQQVAVAVGSAVGALLDPRRADLIAALGETTGRPAFESVLQRMKRSPEGRAVLLERPRVIYEKVGHAWDLPPNTFGAAYASFMGSRNFSPDDRPPVRFMDTDELAYVAMRAREVHDFWHTLFGLPTNLIGESALKVIEFQQMYLPMCFLSVIGGSARFSEKQRKLFFQHYFPWAIRAGMRSTDLMCVYYEQHFHEDLEDLRKKWGIVPAPAAPV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	225	2.2.26 [Sep-21-2011]
Q9ZPR0	226	Ubiquinone biosynthesis p	yes	no	0.995	0.991	0.790	1e-107
Q16FT5	274	Ubiquinone biosynthesis p	N/A	no	0.942	0.773	0.476	4e-55
B3M6C8	266	Ubiquinone biosynthesis p	N/A	no	0.946	0.800	0.427	3e-50
B3NHV5	268	Ubiquinone biosynthesis p	N/A	no	0.946	0.794	0.413	2e-49
B4PJV6	268	Ubiquinone biosynthesis p	N/A	no	0.946	0.794	0.413	4e-49
B4N6G2	265	Ubiquinone biosynthesis p	N/A	no	0.96	0.815	0.429	2e-48
Q9VVG6	268	Ubiquinone biosynthesis p	yes	no	0.946	0.794	0.4	6e-48
B4QNU8	268	Ubiquinone biosynthesis p	N/A	no	0.946	0.794	0.4	7e-48
Q7Q9J8	282	Ubiquinone biosynthesis p	yes	no	0.942	0.751	0.420	8e-48
B4HKS2	268	Ubiquinone biosynthesis p	N/A	no	0.946	0.794	0.4	9e-48

>sp|Q9ZPR0|COQ4_ARATH Ubiquinone biosynthesis protein COQ4 homolog, mitochondrial OS=Arabidopsis thaliana GN=At2g03690 PE=2 SV=1

 Score =  385 bits (990), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 177/224 (79%), Positives = 202/224 (90%)

Query: 1   MIQGARVQLNGWQQVAVAVGSAVGALLDPRRADLIAALGETTGRPAFESVLQRMKRSPEG 60
           +I+ ARV L+ WQQ AVA+GSA+GAL+DPRRADLIAALGETTG+PAFE VL+RMK+S EG
Sbjct: 2   IIERARVPLSRWQQAAVAMGSALGALVDPRRADLIAALGETTGKPAFEMVLERMKKSEEG 61

Query: 61  RAVLLERPRVIYEKVGHAWDLPPNTFGAAYASFMGSRNFSPDDRPPVRFMDTDELAYVAM 120
           RA+LLERPRV+ E+VGHAWDLP NTFGAAYA FMGSRNFSPDDRPPVRFM+TDELAYVA 
Sbjct: 62  RAILLERPRVVSEQVGHAWDLPENTFGAAYAKFMGSRNFSPDDRPPVRFMETDELAYVAT 121

Query: 121 RAREVHDFWHTLFGLPTNLIGESALKVIEFQQMYLPMCFLSVIGGSARFSEKQRKLFFQH 180
           RAREVHD WHTLFGLPTNLIGES+LKVIEF+QMYLPMC LSVIGG+ RF+EKQR +F +H
Sbjct: 122 RAREVHDLWHTLFGLPTNLIGESSLKVIEFEQMYLPMCMLSVIGGTVRFNEKQRSMFLKH 181

Query: 181 YFPWAIRAGMRSTDLMCVYYEQHFHEDLEDLRKKWGIVPAPAAP 224
           Y PWA+RAG + TDLMCVYYE+HF EDLE +R+KWGI+PAP  P
Sbjct: 182 YLPWAVRAGRQCTDLMCVYYERHFSEDLEQVRRKWGIIPAPQHP 225

Component of the coenzyme Q biosynthetic pathway. May play a role in organizing a multi-subunit COQ enzyme complex required for coenzyme Q biosynthesis. Required for steady-state levels of other COQ polypeptides.
Arabidopsis thaliana (taxid: 3702)

>sp|Q16FT5|COQ4_AEDAE Ubiquinone biosynthesis protein COQ4 homolog, mitochondrial OS=Aedes aegypti GN=AAEL014646 PE=3 SV=1

 Score =  214 bits (545), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 102/214 (47%), Positives = 142/214 (66%), Gaps = 2/214 (0%)

Query: 6   RVQLNGWQQVAVAVGSAVGALLDPRRADLIAALGETTGRPAFESVLQRMKRSPEGRAVLL 65
           +++L   Q+V ++ GS++ AL+DPRR D+IA LGETTG PA E++  +M+ S EGR +L 
Sbjct: 55  QIKLTELQRVILSAGSSIAALVDPRRHDMIACLGETTGVPALENIRDQMRNSDEGRQILE 114

Query: 66  ERPRVIYEKVGHA--WDLPPNTFGAAYASFMGSRNFSPDDRPPVRFMDTDELAYVAMRAR 123
           ++PR+    V       LP NTFG  Y SFM     +PD R  V+FMD  ELAYV  R R
Sbjct: 115 DKPRINTRTVNMDALKKLPENTFGYQYVSFMEKYEITPDSRMEVKFMDDPELAYVMTRYR 174

Query: 124 EVHDFWHTLFGLPTNLIGESALKVIEFQQMYLPMCFLSVIGGSARFSEKQRKLFFQHYFP 183
           E HD  HT+FG+PTN++GE A+K +E   + LPMC+   I G+ R   KQR+ + Q Y P
Sbjct: 175 ETHDLVHTVFGMPTNMLGEVAIKWVEAINIGLPMCYGGAIFGAFRLRPKQRQNYLQRYLP 234

Query: 184 WAIRAGMRSTDLMCVYYEQHFHEDLEDLRKKWGI 217
           WA+RAG R+  LMCVY+E+ + +D+E+LRK+  I
Sbjct: 235 WALRAGQRARPLMCVYWEKRWEQDIEELRKELNI 268

Component of the coenzyme Q biosynthetic pathway. May play a role in organizing a multi-subunit COQ enzyme complex required for coenzyme Q biosynthesis. Required for steady-state levels of other COQ polypeptides.

Aedes aegypti (taxid: 7159)

>sp|B3M6C8|COQ4_DROAN Ubiquinone biosynthesis protein COQ4 homolog, mitochondrial OS=Drosophila ananassae GN=GF24309 PE=3 SV=1

 Score =  198 bits (503), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 92/215 (42%), Positives = 138/215 (64%), Gaps = 2/215 (0%)

Query: 6   RVQLNGWQQVAVAVGSAVGALLDPRRADLIAALGETTGRPAFESVLQRMKRSPEGRAVLL 65
           R++++ +Q+V +  GS++ ALLDPRR D+IA LGETTG  A E++L  M+ S EG+ ++ 
Sbjct: 47  RIEISPFQRVILGAGSSIAALLDPRRHDMIACLGETTGEGALENILDTMQASEEGQRIMA 106

Query: 66  ERPRVIYEKVGHAW--DLPPNTFGAAYASFMGSRNFSPDDRPPVRFMDTDELAYVAMRAR 123
           E+PR+    +       LP ++FGAAY  F+     +PD R  VRF++  +LAY+  R R
Sbjct: 107 EKPRIHTSTIDFKLLESLPADSFGAAYVKFLKDNQVTPDSRMAVRFLEDPKLAYLMTRYR 166

Query: 124 EVHDFWHTLFGLPTNLIGESALKVIEFQQMYLPMCFLSVIGGSARFSEKQRKLFFQHYFP 183
           E HD  HT+ G+PTN++GE A+K +E     LPMC+   + G+ R   KQR+ + +HY P
Sbjct: 167 ECHDLIHTVLGMPTNMLGEVAVKWVEALNTGLPMCYGGAVFGAVRLRPKQRRAYLKHYLP 226

Query: 184 WAIRAGMRSTDLMCVYYEQHFHEDLEDLRKKWGIV 218
           WA+  G RS  LM VY+E+ + + L+DLR + GI 
Sbjct: 227 WALENGKRSKPLMPVYWEKRWEQKLQDLRAELGIT 261

Component of the coenzyme Q biosynthetic pathway. May play a role in organizing a multi-subunit COQ enzyme complex required for coenzyme Q biosynthesis. Required for steady-state levels of other COQ polypeptides.

Drosophila ananassae (taxid: 7217)

>sp|B3NHV5|COQ4_DROER Ubiquinone biosynthesis protein COQ4 homolog, mitochondrial OS=Drosophila erecta GN=GG15811 PE=3 SV=2

 Score =  195 bits (495), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 89/215 (41%), Positives = 139/215 (64%), Gaps = 2/215 (0%)

Query: 6   RVQLNGWQQVAVAVGSAVGALLDPRRADLIAALGETTGRPAFESVLQRMKRSPEGRAVLL 65
           R++++ +Q+V +A GS++ ALLDPRR D+IA LGETTG  A  ++L  M+ S EG+ ++ 
Sbjct: 49  RIEISPFQRVFLAAGSSIAALLDPRRHDMIACLGETTGEDALWTILDSMQASEEGQRIMA 108

Query: 66  ERPRVIYEKVGHAW--DLPPNTFGAAYASFMGSRNFSPDDRPPVRFMDTDELAYVAMRAR 123
           ++PR+    +   +   LPP+TFGAAY  F+     +PD R  VRF++  +LAY+  R R
Sbjct: 109 DKPRIHTSTIDFKYLETLPPDTFGAAYVKFLKDNQVTPDSRMAVRFLEEPKLAYLMTRYR 168

Query: 124 EVHDFWHTLFGLPTNLIGESALKVIEFQQMYLPMCFLSVIGGSARFSEKQRKLFFQHYFP 183
           E HD  HT+  +PTN++GE ++K +E     LPMC+   + G+ R   KQR+ + +HY P
Sbjct: 169 ECHDLIHTVLDMPTNMLGEVSVKWVEALNTGLPMCYGGAVFGAVRLRPKQRRAYLKHYLP 228

Query: 184 WAIRAGMRSTDLMCVYYEQHFHEDLEDLRKKWGIV 218
           WA+  G R+  LM VY+E+ + +++ DLR + GI 
Sbjct: 229 WALENGKRTKPLMPVYWEKRWEQNIHDLRSELGIT 263

Component of the coenzyme Q biosynthetic pathway. May play a role in organizing a multi-subunit COQ enzyme complex required for coenzyme Q biosynthesis. Required for steady-state levels of other COQ polypeptides.

Drosophila erecta (taxid: 7220)

>sp|B4PJV6|COQ4_DROYA Ubiquinone biosynthesis protein COQ4 homolog, mitochondrial OS=Drosophila yakuba GN=GE22150 PE=3 SV=2

 Score =  194 bits (494), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 89/215 (41%), Positives = 138/215 (64%), Gaps = 2/215 (0%)

Query: 6   RVQLNGWQQVAVAVGSAVGALLDPRRADLIAALGETTGRPAFESVLQRMKRSPEGRAVLL 65
           R++++ +Q+V +  GS++ ALLDPRR D+IA LGETTG  A  ++L  M+ S EG+ ++ 
Sbjct: 49  RIEISPFQRVFLGAGSSIAALLDPRRHDMIACLGETTGEDALLTILDTMQASEEGQRIMA 108

Query: 66  ERPRVIYEKVGHAW--DLPPNTFGAAYASFMGSRNFSPDDRPPVRFMDTDELAYVAMRAR 123
           ++PR+    +   +   LPP+TFGAAY  F+     +PD R  VRF++  +LAY+  R R
Sbjct: 109 DKPRIHTSTIDFKYLETLPPDTFGAAYVKFLKDNQVTPDSRMAVRFLEDPKLAYLMTRYR 168

Query: 124 EVHDFWHTLFGLPTNLIGESALKVIEFQQMYLPMCFLSVIGGSARFSEKQRKLFFQHYFP 183
           E HD  HT+  +PTN++GE A+K +E     LPMC+   + G+ R   KQR+ + +HY P
Sbjct: 169 ECHDLIHTVLDMPTNMLGEVAVKWVEALNTGLPMCYGGAVFGAVRLRPKQRRAYLKHYLP 228

Query: 184 WAIRAGMRSTDLMCVYYEQHFHEDLEDLRKKWGIV 218
           WA+  G RS  LM VY+E+ + +++ +LR + GI 
Sbjct: 229 WALENGKRSKPLMPVYWEKRWEQNIHELRSELGIT 263

Component of the coenzyme Q biosynthetic pathway. May play a role in organizing a multi-subunit COQ enzyme complex required for coenzyme Q biosynthesis. Required for steady-state levels of other COQ polypeptides.

Drosophila yakuba (taxid: 7245)

>sp|B4N6G2|COQ4_DROWI Ubiquinone biosynthesis protein COQ4 homolog, mitochondrial OS=Drosophila willistoni GN=GK18052 PE=3 SV=1

 Score =  192 bits (487), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 94/219 (42%), Positives = 138/219 (63%), Gaps = 3/219 (1%)

Query: 6   RVQLNGWQQVAVAVGSAVGALLDPRRADLIAALGETTGRPAFESVLQRMKRSPEGRAVLL 65
           R+++  +Q++ +  GS+V A+LDPRR D+IA LGETTG  A  ++L  M+ S EG+ +L+
Sbjct: 40  RIEITPFQRMLLGAGSSVAAILDPRRHDMIACLGETTGEGALWNILDTMEASEEGQRILI 99

Query: 66  ERPRVIYEKVG--HAWDLPPNTFGAAYASFMGSRNFSPDDRPPVRFMDTDELAYVAMRAR 123
           ++PR+    +       LPP+TFGAAY  F+   N +PD R PVRF++  +LAY+  R R
Sbjct: 100 DKPRIHTSTIDFKRLETLPPDTFGAAYVKFLKDNNVTPDSRMPVRFLEDPKLAYLMTRYR 159

Query: 124 EVHDFWHTLFGLPTNLIGESALKVIEFQQMYLPMCFLSVIGGSARFSEKQRKLFFQHYFP 183
           E HD  HT+  +PTN++GE A+K +E     LPMC+   + G+ R   KQR+ + + Y P
Sbjct: 160 ECHDLIHTVLNMPTNMLGEVAVKWVEALNTNLPMCYGGAVFGAVRLRPKQRREYLKRYLP 219

Query: 184 WAIRAGMRSTDLMCVYYEQHFHEDLEDLRKKWGIVPAPA 222
           WAI  G R   LM VY+EQ + ++L DL KK   +  PA
Sbjct: 220 WAIDNGKRMKPLMPVYWEQRWEQNL-DLAKKTSPIMLPA 257

Component of the coenzyme Q biosynthetic pathway. May play a role in organizing a multi-subunit COQ enzyme complex required for coenzyme Q biosynthesis. Required for steady-state levels of other COQ polypeptides.

Drosophila willistoni (taxid: 7260)

>sp|Q9VVG6|COQ4_DROME Ubiquinone biosynthesis protein COQ4 homolog, mitochondrial OS=Drosophila melanogaster GN=CG32174 PE=3 SV=3

 Score =  190 bits (483), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 86/215 (40%), Positives = 138/215 (64%), Gaps = 2/215 (0%)

Query: 6   RVQLNGWQQVAVAVGSAVGALLDPRRADLIAALGETTGRPAFESVLQRMKRSPEGRAVLL 65
           R++++ +Q++ +  GS++ ALL+PRR D+IA LGETTG  A  ++L  M+ S EG+ ++ 
Sbjct: 49  RIEISPFQRLFLGAGSSIAALLNPRRHDMIACLGETTGEDALWTILDTMQASEEGQRIMA 108

Query: 66  ERPRVIYEKVGHAW--DLPPNTFGAAYASFMGSRNFSPDDRPPVRFMDTDELAYVAMRAR 123
           ++PR+    +   +   LPP+TFGAAY  F+     +PD R  VRF++  +LAY+  R R
Sbjct: 109 DKPRIHTSTIDFKYLETLPPDTFGAAYVKFLKDNQVTPDSRMAVRFLEDPKLAYLMTRYR 168

Query: 124 EVHDFWHTLFGLPTNLIGESALKVIEFQQMYLPMCFLSVIGGSARFSEKQRKLFFQHYFP 183
           E HD  HT+  +PTN++GE A+K +E     LPMC+   + G+ R   KQR+ + +HY P
Sbjct: 169 ECHDLIHTVLDMPTNMLGEVAVKWVEALNTGLPMCYGGAVFGAVRLRPKQRRAYLKHYLP 228

Query: 184 WAIRAGMRSTDLMCVYYEQHFHEDLEDLRKKWGIV 218
           WA+  G R+  LM VY+E+ + +++ +LR + GI 
Sbjct: 229 WALENGKRTKPLMPVYWEKRWEQNIHELRSELGIT 263

Component of the coenzyme Q biosynthetic pathway. May play a role in organizing a multi-subunit COQ enzyme complex required for coenzyme Q biosynthesis. Required for steady-state levels of other COQ polypeptides.

Drosophila melanogaster (taxid: 7227)

>sp|B4QNU8|COQ4_DROSI Ubiquinone biosynthesis protein COQ4 homolog, mitochondrial OS=Drosophila simulans GN=GD12405 PE=3 SV=2

 Score =  190 bits (482), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 86/215 (40%), Positives = 138/215 (64%), Gaps = 2/215 (0%)

Query: 6   RVQLNGWQQVAVAVGSAVGALLDPRRADLIAALGETTGRPAFESVLQRMKRSPEGRAVLL 65
           R++++ +Q++ +  GS++ ALL+PRR D+IA LGETTG  A  ++L  M+ S EG+ ++ 
Sbjct: 49  RIEISPFQRLFLGTGSSIAALLNPRRHDMIACLGETTGEDALWTILDTMQASEEGQRIMA 108

Query: 66  ERPRVIYEKVGHAW--DLPPNTFGAAYASFMGSRNFSPDDRPPVRFMDTDELAYVAMRAR 123
           ++PR+    +   +   LPP+TFGAAY  F+     +PD R  VRF++  +LAY+  R R
Sbjct: 109 DKPRIHTSTIDFKYLETLPPDTFGAAYVKFLKDNQVTPDSRMAVRFLEDPKLAYLMTRYR 168

Query: 124 EVHDFWHTLFGLPTNLIGESALKVIEFQQMYLPMCFLSVIGGSARFSEKQRKLFFQHYFP 183
           E HD  HT+  +PTN++GE A+K +E     LPMC+   + G+ R   KQR+ + +HY P
Sbjct: 169 ECHDLIHTVLDMPTNMLGEVAVKWVEALNTGLPMCYGGAVFGAVRLRPKQRRAYLKHYLP 228

Query: 184 WAIRAGMRSTDLMCVYYEQHFHEDLEDLRKKWGIV 218
           WA+  G R+  LM VY+E+ + +++ +LR + GI 
Sbjct: 229 WALENGKRAKPLMPVYWEKRWEQNIHELRSELGIT 263

Component of the coenzyme Q biosynthetic pathway. May play a role in organizing a multi-subunit COQ enzyme complex required for coenzyme Q biosynthesis. Required for steady-state levels of other COQ polypeptides.

Drosophila simulans (taxid: 7240)

>sp|Q7Q9J8|COQ4_ANOGA Ubiquinone biosynthesis protein COQ4 homolog, mitochondrial OS=Anopheles gambiae GN=AGAP005199 PE=3 SV=4

 Score =  190 bits (482), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 90/214 (42%), Positives = 133/214 (62%), Gaps = 2/214 (0%)

Query: 6   RVQLNGWQQVAVAVGSAVGALLDPRRADLIAALGETTGRPAFESVLQRMKRSPEGRAVLL 65
           R++++  Q++ ++ GS+V AL+DPRR D+IA LGETTGR A E +L  M+ + EG+ +L+
Sbjct: 64  RIEVSDIQRLILSAGSSVAALVDPRRHDMIACLGETTGREALEKILHYMRSTEEGQRILV 123

Query: 66  ERPRVIYEKVGHA--WDLPPNTFGAAYASFMGSRNFSPDDRPPVRFMDTDELAYVAMRAR 123
           E+PR+    V       +P +TFG  Y  FM   N +PD R  VRF+D   LAYV  R R
Sbjct: 124 EKPRINTRTVDMEALKKMPEHTFGYTYVKFMEDNNITPDSRMEVRFLDEPGLAYVMTRYR 183

Query: 124 EVHDFWHTLFGLPTNLIGESALKVIEFQQMYLPMCFLSVIGGSARFSEKQRKLFFQHYFP 183
           E HD  H +  +PTN++GE  +K +E     LPMC+   + G+ R   KQR+ + + Y P
Sbjct: 184 ETHDMVHAILDMPTNMLGEVTVKWVEALNTGLPMCYGGAVFGAFRLRTKQRQNYLRKYLP 243

Query: 184 WAIRAGMRSTDLMCVYYEQHFHEDLEDLRKKWGI 217
           WA+R G R   LM VY+E+ + +D+ +LRK+  I
Sbjct: 244 WALRTGNRIKPLMGVYWEKRWEQDVTELRKELNI 277

Component of the coenzyme Q biosynthetic pathway. May play a role in organizing a multi-subunit COQ enzyme complex required for coenzyme Q biosynthesis. Required for steady-state levels of other COQ polypeptides.

Anopheles gambiae (taxid: 7165)

>sp|B4HKS2|COQ4_DROSE Ubiquinone biosynthesis protein COQ4 homolog, mitochondrial OS=Drosophila sechellia GN=GM24332 PE=3 SV=1

 Score =  190 bits (482), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 86/215 (40%), Positives = 138/215 (64%), Gaps = 2/215 (0%)

Query: 6   RVQLNGWQQVAVAVGSAVGALLDPRRADLIAALGETTGRPAFESVLQRMKRSPEGRAVLL 65
           R++++ +Q++ +  GS++ ALL+PRR D+IA LGETTG  A  ++L  M+ S EG+ ++ 
Sbjct: 49  RIEISPFQRLFLGAGSSIAALLNPRRHDMIACLGETTGEDALWTILDTMQASEEGQRIMA 108

Query: 66  ERPRVIYEKVGHAW--DLPPNTFGAAYASFMGSRNFSPDDRPPVRFMDTDELAYVAMRAR 123
           ++PR+    +   +   LPP+TFGAAY  F+     +PD R  VRF++  +LAY+  R R
Sbjct: 109 DKPRIHTSTIDFKYLETLPPDTFGAAYVKFLKDNQVTPDSRMAVRFLEDPKLAYLMTRYR 168

Query: 124 EVHDFWHTLFGLPTNLIGESALKVIEFQQMYLPMCFLSVIGGSARFSEKQRKLFFQHYFP 183
           E HD  HT+  +PTN++GE A+K +E     LPMC+   + G+ R   KQR+ + +HY P
Sbjct: 169 ECHDLIHTVLDMPTNMLGEVAVKWVEALNTGLPMCYGGAVFGAVRLRPKQRRAYLKHYLP 228

Query: 184 WAIRAGMRSTDLMCVYYEQHFHEDLEDLRKKWGIV 218
           WA+  G R+  LM VY+E+ + +++ +LR + GI 
Sbjct: 229 WALENGKRAKPLMPVYWEKRWEQNIHELRSELGIT 263

Component of the coenzyme Q biosynthetic pathway. May play a role in organizing a multi-subunit COQ enzyme complex required for coenzyme Q biosynthesis. Required for steady-state levels of other COQ polypeptides.

Drosophila sechellia (taxid: 7238)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	225
224108874	229	predicted protein [Populus trichocarpa]	0.995	0.978	0.861	1e-114
224101453	229	predicted protein [Populus trichocarpa]	0.995	0.978	0.852	1e-113
225424639	227	PREDICTED: ubiquinone biosynthesis prote	0.995	0.986	0.839	1e-112
449519693	226	PREDICTED: ubiquinone biosynthesis prote	0.982	0.977	0.837	1e-110
449452835	226	PREDICTED: ubiquinone biosynthesis prote	0.982	0.977	0.832	1e-110
255558994	230	ubiquinone biosynthesis protein, putativ	0.982	0.960	0.832	1e-109
297818016	226	predicted protein [Arabidopsis lyrata su	0.995	0.991	0.799	1e-106
226506926	227	ubiquinone biosynthesis protein COQ4 [Ze	0.973	0.964	0.812	1e-105
15227693	226	ubiquinone biosynthesis protein COQ4-lik	0.995	0.991	0.790	1e-105
357166704	227	PREDICTED: ubiquinone biosynthesis prote	0.968	0.960	0.816	1e-105

>gi|224108874|ref|XP_002314999.1| predicted protein [Populus trichocarpa] gi|222864039|gb|EEF01170.1| predicted protein [Populus trichocarpa]

 Score =  418 bits (1074), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 193/224 (86%), Positives = 213/224 (95%)

Query: 1   MIQGARVQLNGWQQVAVAVGSAVGALLDPRRADLIAALGETTGRPAFESVLQRMKRSPEG 60
           MI G R+QLNGWQQ AVAVGSAVGALLDPRRADLIAALGETTG+ AFE V++RMK+SPEG
Sbjct: 1   MIGGGRIQLNGWQQAAVAVGSAVGALLDPRRADLIAALGETTGKHAFERVVERMKKSPEG 60

Query: 61  RAVLLERPRVIYEKVGHAWDLPPNTFGAAYASFMGSRNFSPDDRPPVRFMDTDELAYVAM 120
           RA+LLERPRVI  +VGHAWDLP NTFGAAYASFMGSRNFSPDDRPPVRFM+T+ELAYVAM
Sbjct: 61  RALLLERPRVISAQVGHAWDLPANTFGAAYASFMGSRNFSPDDRPPVRFMETEELAYVAM 120

Query: 121 RAREVHDFWHTLFGLPTNLIGESALKVIEFQQMYLPMCFLSVIGGSARFSEKQRKLFFQH 180
           RAREVHDFWHTLFGLPTNLIGESALKVIEF+QMYLPMC +SV+GG+ARF+EKQRK FFQH
Sbjct: 121 RAREVHDFWHTLFGLPTNLIGESALKVIEFEQMYLPMCLMSVVGGTARFTEKQRKSFFQH 180

Query: 181 YFPWAIRAGMRSTDLMCVYYEQHFHEDLEDLRKKWGIVPAPAAP 224
           YFPWA+RAG++STDLMCVYYE+HFHEDLED+R+KWGI PAPAAP
Sbjct: 181 YFPWAVRAGLQSTDLMCVYYEKHFHEDLEDVRRKWGITPAPAAP 224

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224101453|ref|XP_002312287.1| predicted protein [Populus trichocarpa] gi|222852107|gb|EEE89654.1| predicted protein [Populus trichocarpa]

 Score =  413 bits (1062), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 191/224 (85%), Positives = 211/224 (94%)

Query: 1   MIQGARVQLNGWQQVAVAVGSAVGALLDPRRADLIAALGETTGRPAFESVLQRMKRSPEG 60
           MI G +++LN WQQ AVAVGSAVG+LLDPRRADLIAALGETTG+PAFE V++RMK+SPEG
Sbjct: 1   MIGGGKIRLNRWQQAAVAVGSAVGSLLDPRRADLIAALGETTGKPAFERVVERMKKSPEG 60

Query: 61  RAVLLERPRVIYEKVGHAWDLPPNTFGAAYASFMGSRNFSPDDRPPVRFMDTDELAYVAM 120
           RAVLLERPRVI  +VGHAWDLP NTFGAAYA FMGSRNFSPDDRPPVRFM+T+ELAYVAM
Sbjct: 61  RAVLLERPRVISAQVGHAWDLPANTFGAAYARFMGSRNFSPDDRPPVRFMETEELAYVAM 120

Query: 121 RAREVHDFWHTLFGLPTNLIGESALKVIEFQQMYLPMCFLSVIGGSARFSEKQRKLFFQH 180
           RAREVHDFWHTLFGLPTNLIGESALKVIEF+QMYLPMC +SV+GG+ RF+EKQRKLFFQH
Sbjct: 121 RAREVHDFWHTLFGLPTNLIGESALKVIEFEQMYLPMCLMSVVGGTVRFTEKQRKLFFQH 180

Query: 181 YFPWAIRAGMRSTDLMCVYYEQHFHEDLEDLRKKWGIVPAPAAP 224
           YFPWAIRAGM+STDLMCVYYE+HF EDLED+R+KWGI PAPAAP
Sbjct: 181 YFPWAIRAGMQSTDLMCVYYEKHFQEDLEDVRRKWGITPAPAAP 224

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225424639|ref|XP_002285502.1| PREDICTED: ubiquinone biosynthesis protein COQ4 homolog, mitochondrial [Vitis vinifera]

 Score =  409 bits (1051), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 188/224 (83%), Positives = 210/224 (93%)

Query: 1   MIQGARVQLNGWQQVAVAVGSAVGALLDPRRADLIAALGETTGRPAFESVLQRMKRSPEG 60
           MI GARV+LNGWQQ AVA+GSA+GAL+DPRRADLIAALGETTG+PAFE VL+RMK+SPEG
Sbjct: 2   MIGGARVRLNGWQQAAVAMGSAIGALMDPRRADLIAALGETTGKPAFERVLERMKKSPEG 61

Query: 61  RAVLLERPRVIYEKVGHAWDLPPNTFGAAYASFMGSRNFSPDDRPPVRFMDTDELAYVAM 120
           +A+LL+RPRV+  +VGHAWD+P NTFGAAYA FMGSRNFSPDDRPPVRFM+TDELAYVAM
Sbjct: 62  QAILLDRPRVVSARVGHAWDMPANTFGAAYAKFMGSRNFSPDDRPPVRFMETDELAYVAM 121

Query: 121 RAREVHDFWHTLFGLPTNLIGESALKVIEFQQMYLPMCFLSVIGGSARFSEKQRKLFFQH 180
           RAREVHDFWHTLF LPTNLIGESALKVIEF+QM+LPMC LSVIGG+ARFSEKQR LFFQH
Sbjct: 122 RAREVHDFWHTLFSLPTNLIGESALKVIEFEQMFLPMCLLSVIGGTARFSEKQRALFFQH 181

Query: 181 YFPWAIRAGMRSTDLMCVYYEQHFHEDLEDLRKKWGIVPAPAAP 224
           YFPWA RAGM+ TDLMC+YYEQHFHEDL+D+R+KWGIVPAP  P
Sbjct: 182 YFPWATRAGMQCTDLMCIYYEQHFHEDLDDVRRKWGIVPAPPPP 225

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449519693|ref|XP_004166869.1| PREDICTED: ubiquinone biosynthesis protein COQ4 homolog, mitochondrial-like isoform 1 [Cucumis sativus] gi|449519695|ref|XP_004166870.1| PREDICTED: ubiquinone biosynthesis protein COQ4 homolog, mitochondrial-like isoform 2 [Cucumis sativus]

 Score =  404 bits (1037), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 185/221 (83%), Positives = 206/221 (93%)

Query: 1   MIQGARVQLNGWQQVAVAVGSAVGALLDPRRADLIAALGETTGRPAFESVLQRMKRSPEG 60
           M+ G R+QLN WQQ AVA+GSAVGALLDPRRADLIAALGETTG+PAFE VL+RMK+S EG
Sbjct: 1   MVGGVRIQLNRWQQAAVALGSAVGALLDPRRADLIAALGETTGKPAFERVLERMKKSAEG 60

Query: 61  RAVLLERPRVIYEKVGHAWDLPPNTFGAAYASFMGSRNFSPDDRPPVRFMDTDELAYVAM 120
           RAVL+ERPRV+  +VGHAWDLP NTFG AYA+FMGSRNFSPDDRPPVRFMDT+EL YVAM
Sbjct: 61  RAVLMERPRVLSSEVGHAWDLPSNTFGGAYANFMGSRNFSPDDRPPVRFMDTEELEYVAM 120

Query: 121 RAREVHDFWHTLFGLPTNLIGESALKVIEFQQMYLPMCFLSVIGGSARFSEKQRKLFFQH 180
           RAREVHDFWHTLFGLPTNLIGESALKVIEF+QM+LPMC LSV+GG+ARFSEKQRKLFFQH
Sbjct: 121 RAREVHDFWHTLFGLPTNLIGESALKVIEFEQMHLPMCMLSVLGGTARFSEKQRKLFFQH 180

Query: 181 YFPWAIRAGMRSTDLMCVYYEQHFHEDLEDLRKKWGIVPAP 221
           YFPW+IRAGM+ TDLMC+YYE+HFHEDL D+R KWGI+PAP
Sbjct: 181 YFPWSIRAGMQCTDLMCIYYERHFHEDLNDVRAKWGIIPAP 221

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449452835|ref|XP_004144164.1| PREDICTED: ubiquinone biosynthesis protein COQ4 homolog, mitochondrial-like [Cucumis sativus]

 Score =  402 bits (1034), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 184/221 (83%), Positives = 206/221 (93%)

Query: 1   MIQGARVQLNGWQQVAVAVGSAVGALLDPRRADLIAALGETTGRPAFESVLQRMKRSPEG 60
           M+ G R+QLN WQQ AVA+GSAVGALLDPRRADLIAALGETTG+PAFE VL+RMK+S EG
Sbjct: 1   MVGGVRIQLNRWQQAAVALGSAVGALLDPRRADLIAALGETTGKPAFERVLERMKKSAEG 60

Query: 61  RAVLLERPRVIYEKVGHAWDLPPNTFGAAYASFMGSRNFSPDDRPPVRFMDTDELAYVAM 120
           RAVL+ERPRV+  +VGHAWDLP NTFG AYA+FMGSRNFSPDDRPPVRFMDT+EL YVAM
Sbjct: 61  RAVLMERPRVLSSEVGHAWDLPSNTFGGAYANFMGSRNFSPDDRPPVRFMDTEELEYVAM 120

Query: 121 RAREVHDFWHTLFGLPTNLIGESALKVIEFQQMYLPMCFLSVIGGSARFSEKQRKLFFQH 180
           RAREVHDFWHTLFGLPTNLIGESALKVIEF+QM+LPMC LSV+GG+ARF+EKQRKLFFQH
Sbjct: 121 RAREVHDFWHTLFGLPTNLIGESALKVIEFEQMHLPMCMLSVLGGTARFNEKQRKLFFQH 180

Query: 181 YFPWAIRAGMRSTDLMCVYYEQHFHEDLEDLRKKWGIVPAP 221
           YFPW+IRAGM+ TDLMC+YYE+HFHEDL D+R KWGI+PAP
Sbjct: 181 YFPWSIRAGMQCTDLMCIYYERHFHEDLNDVRAKWGIIPAP 221

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255558994|ref|XP_002520520.1| ubiquinone biosynthesis protein, putative [Ricinus communis] gi|223540362|gb|EEF41933.1| ubiquinone biosynthesis protein, putative [Ricinus communis]

 Score =  399 bits (1024), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 184/221 (83%), Positives = 204/221 (92%)

Query: 4   GARVQLNGWQQVAVAVGSAVGALLDPRRADLIAALGETTGRPAFESVLQRMKRSPEGRAV 63
           GARV+LN WQQ AVAVGSA+GALLDPRRADLIAALGETTG+PAFE VLQRMK SPEGRAV
Sbjct: 5   GARVRLNRWQQAAVAVGSALGALLDPRRADLIAALGETTGKPAFERVLQRMKSSPEGRAV 64

Query: 64  LLERPRVIYEKVGHAWDLPPNTFGAAYASFMGSRNFSPDDRPPVRFMDTDELAYVAMRAR 123
           LL+RPRV+   +G+AWDLP NTFGAAYA FMGSRNFSPDDRP VRFMDTDELAYVAMRAR
Sbjct: 65  LLDRPRVVSANIGYAWDLPANTFGAAYARFMGSRNFSPDDRPLVRFMDTDELAYVAMRAR 124

Query: 124 EVHDFWHTLFGLPTNLIGESALKVIEFQQMYLPMCFLSVIGGSARFSEKQRKLFFQHYFP 183
           EVHDFWHTLF LPTNL+GESALKVIEF+QMYLPMC +SV+GG+ RF+EKQRKLF QHYFP
Sbjct: 125 EVHDFWHTLFDLPTNLVGESALKVIEFEQMYLPMCIMSVVGGTTRFNEKQRKLFLQHYFP 184

Query: 184 WAIRAGMRSTDLMCVYYEQHFHEDLEDLRKKWGIVPAPAAP 224
           WA+RAGM+ TDLMCVYYE+HFHEDL+D+R+K GI+PAPA P
Sbjct: 185 WAVRAGMQCTDLMCVYYEKHFHEDLDDVRRKLGIIPAPAVP 225

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297818016|ref|XP_002876891.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297322729|gb|EFH53150.1| predicted protein [Arabidopsis lyrata subsp. lyrata]

 Score =  389 bits (999), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 179/224 (79%), Positives = 203/224 (90%)

Query: 1   MIQGARVQLNGWQQVAVAVGSAVGALLDPRRADLIAALGETTGRPAFESVLQRMKRSPEG 60
           +I+ ARV L+ WQQ AVA+GSA+GAL+DPRRADLIAALGETTG+PAFE VL+RMK+S EG
Sbjct: 2   IIERARVPLSRWQQAAVAMGSAIGALVDPRRADLIAALGETTGKPAFEMVLERMKKSEEG 61

Query: 61  RAVLLERPRVIYEKVGHAWDLPPNTFGAAYASFMGSRNFSPDDRPPVRFMDTDELAYVAM 120
           RA+LLERPRV+ E+VGHAWDLP NTFGAAYA FMGSRNFSPDDRPPVRFM+TDELAYVA 
Sbjct: 62  RAILLERPRVVSEQVGHAWDLPENTFGAAYAKFMGSRNFSPDDRPPVRFMETDELAYVAT 121

Query: 121 RAREVHDFWHTLFGLPTNLIGESALKVIEFQQMYLPMCFLSVIGGSARFSEKQRKLFFQH 180
           RAREVHD WHTLFGLPTNLIGESALKVIEF+QMYLPMC LSVIGG+ RF+EKQR +F +H
Sbjct: 122 RAREVHDLWHTLFGLPTNLIGESALKVIEFEQMYLPMCMLSVIGGTVRFNEKQRSMFLKH 181

Query: 181 YFPWAIRAGMRSTDLMCVYYEQHFHEDLEDLRKKWGIVPAPAAP 224
           YFPWA+RAG + TDLMCVYYE+HF EDLE +R+KWGI+PAP  P
Sbjct: 182 YFPWAVRAGRQCTDLMCVYYERHFSEDLEQVRRKWGIIPAPQHP 225

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|226506926|ref|NP_001149451.1| ubiquinone biosynthesis protein COQ4 [Zea mays] gi|195627326|gb|ACG35493.1| ubiquinone biosynthesis protein COQ4 [Zea mays]

 Score =  386 bits (991), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 178/219 (81%), Positives = 196/219 (89%)

Query: 4   GARVQLNGWQQVAVAVGSAVGALLDPRRADLIAALGETTGRPAFESVLQRMKRSPEGRAV 63
           GARVQL GWQQ AVA GSA GALLDPRRADLIAALGETTG+PAFE VLQRMK S EGR V
Sbjct: 3   GARVQLKGWQQAAVAFGSAFGALLDPRRADLIAALGETTGKPAFERVLQRMKNSAEGREV 62

Query: 64  LLERPRVIYEKVGHAWDLPPNTFGAAYASFMGSRNFSPDDRPPVRFMDTDELAYVAMRAR 123
           L ERPRV+  +V HAWD+P NTFGAAYA FMGSRNFSPDDRPPVRFMDTDELAYVA RAR
Sbjct: 63  LSERPRVVSSQVSHAWDMPQNTFGAAYAQFMGSRNFSPDDRPPVRFMDTDELAYVATRAR 122

Query: 124 EVHDFWHTLFGLPTNLIGESALKVIEFQQMYLPMCFLSVIGGSARFSEKQRKLFFQHYFP 183
           EVHDFWH LFGLPTNLIGE+ALKVIEF+QM+LPMC LSV+GGSARFS+KQR LFFQHYFP
Sbjct: 123 EVHDFWHVLFGLPTNLIGETALKVIEFEQMFLPMCMLSVVGGSARFSDKQRALFFQHYFP 182

Query: 184 WAIRAGMRSTDLMCVYYEQHFHEDLEDLRKKWGIVPAPA 222
           WA +AG++ TDLM VYYE+HFHEDLE++R+ WGI+P P+
Sbjct: 183 WATKAGLKCTDLMSVYYEKHFHEDLEEVRRNWGILPCPS 221

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15227693|ref|NP_178465.1| ubiquinone biosynthesis protein COQ4-like protein [Arabidopsis thaliana] gi|24211606|sp|Q9ZPR0.1|COQ4_ARATH RecName: Full=Ubiquinone biosynthesis protein COQ4 homolog, mitochondrial; AltName: Full=Coenzyme Q biosynthesis protein 4 homolog; Flags: Precursor gi|4406761|gb|AAD20072.1| putative ubiquinone biosynthesis protein [Arabidopsis thaliana] gi|17473563|gb|AAL38257.1| putative ubiquinone biosynthesis protein [Arabidopsis thaliana] gi|21386913|gb|AAM47860.1| putative ubiquinone biosynthesis protein [Arabidopsis thaliana] gi|21553964|gb|AAM63045.1| putative ubiquinone biosynthesis protein [Arabidopsis thaliana] gi|330250643|gb|AEC05737.1| ubiquinone biosynthesis protein COQ4-like protein [Arabidopsis thaliana]

 Score =  385 bits (990), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 177/224 (79%), Positives = 202/224 (90%)

Query: 1   MIQGARVQLNGWQQVAVAVGSAVGALLDPRRADLIAALGETTGRPAFESVLQRMKRSPEG 60
           +I+ ARV L+ WQQ AVA+GSA+GAL+DPRRADLIAALGETTG+PAFE VL+RMK+S EG
Sbjct: 2   IIERARVPLSRWQQAAVAMGSALGALVDPRRADLIAALGETTGKPAFEMVLERMKKSEEG 61

Query: 61  RAVLLERPRVIYEKVGHAWDLPPNTFGAAYASFMGSRNFSPDDRPPVRFMDTDELAYVAM 120
           RA+LLERPRV+ E+VGHAWDLP NTFGAAYA FMGSRNFSPDDRPPVRFM+TDELAYVA 
Sbjct: 62  RAILLERPRVVSEQVGHAWDLPENTFGAAYAKFMGSRNFSPDDRPPVRFMETDELAYVAT 121

Query: 121 RAREVHDFWHTLFGLPTNLIGESALKVIEFQQMYLPMCFLSVIGGSARFSEKQRKLFFQH 180
           RAREVHD WHTLFGLPTNLIGES+LKVIEF+QMYLPMC LSVIGG+ RF+EKQR +F +H
Sbjct: 122 RAREVHDLWHTLFGLPTNLIGESSLKVIEFEQMYLPMCMLSVIGGTVRFNEKQRSMFLKH 181

Query: 181 YFPWAIRAGMRSTDLMCVYYEQHFHEDLEDLRKKWGIVPAPAAP 224
           Y PWA+RAG + TDLMCVYYE+HF EDLE +R+KWGI+PAP  P
Sbjct: 182 YLPWAVRAGRQCTDLMCVYYERHFSEDLEQVRRKWGIIPAPQHP 225

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357166704|ref|XP_003580809.1| PREDICTED: ubiquinone biosynthesis protein COQ4 homolog, mitochondrial-like [Brachypodium distachyon]

 Score =  385 bits (989), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 178/218 (81%), Positives = 195/218 (89%)

Query: 4   GARVQLNGWQQVAVAVGSAVGALLDPRRADLIAALGETTGRPAFESVLQRMKRSPEGRAV 63
            ARV L GWQQ AVA GSA GALLDP+RADLIAALGETTG+PAFE VLQRMK S EGR V
Sbjct: 3   AARVNLKGWQQAAVAFGSAFGALLDPKRADLIAALGETTGKPAFERVLQRMKNSAEGREV 62

Query: 64  LLERPRVIYEKVGHAWDLPPNTFGAAYASFMGSRNFSPDDRPPVRFMDTDELAYVAMRAR 123
           LLERPRVI  +V HAWD+P NTFGAAYA FMGSRNFSPDDRPPVRFMDT+ELA+VA RAR
Sbjct: 63  LLERPRVISTQVSHAWDMPENTFGAAYAQFMGSRNFSPDDRPPVRFMDTEELAFVATRAR 122

Query: 124 EVHDFWHTLFGLPTNLIGESALKVIEFQQMYLPMCFLSVIGGSARFSEKQRKLFFQHYFP 183
           EVHDFWH LFGLPTNLIGE+ALKVIEF+QM+LPMC LSV+GGSARFSEKQR LFFQHYFP
Sbjct: 123 EVHDFWHVLFGLPTNLIGETALKVIEFEQMFLPMCMLSVVGGSARFSEKQRTLFFQHYFP 182

Query: 184 WAIRAGMRSTDLMCVYYEQHFHEDLEDLRKKWGIVPAP 221
           WA +AG++STDLM VYYE+HFHEDLE++R+ WGIVP P
Sbjct: 183 WATKAGLKSTDLMSVYYEKHFHEDLEEVRRNWGIVPCP 220

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	225
TAIR|locus:2044244	226	AT2G03690 "AT2G03690" [Arabido	0.995	0.991	0.754	1e-93
FB|FBgn0052174	268	CG32174 [Drosophila melanogast	0.942	0.791	0.387	3.2e-42
UNIPROTKB|F1NEN7	260	COQ4 "Uncharacterized protein"	0.946	0.819	0.404	8.7e-40
UNIPROTKB|F1RR97	265	LOC100628217 "Uncharacterized	0.928	0.788	0.407	6.1e-39
RGD|1304638	265	Coq4 "coenzyme Q4 homolog (S.	0.871	0.739	0.414	1.3e-38
MGI|MGI:1098826	266	Coq4 "coenzyme Q4 homolog (yea	0.871	0.736	0.414	4.3e-38
UNIPROTKB|E2RSQ6	265	COQ4 "Uncharacterized protein"	0.928	0.788	0.383	1.9e-37
UNIPROTKB|J9NT53	210	COQ4 "Uncharacterized protein"	0.871	0.933	0.404	2.4e-37
UNIPROTKB|Q9Y3A0	265	COQ4 "Ubiquinone biosynthesis	0.928	0.788	0.379	4.9e-37
ASPGD|ASPL0000075453	285	AN4757 [Emericella nidulans (t	0.951	0.750	0.394	1.7e-36

TAIR|locus:2044244 AT2G03690 "AT2G03690" [Arabidopsis thaliana (taxid:3702)]

 Score = 933 (333.5 bits), Expect = 1.0e-93, P = 1.0e-93
 Identities = 169/224 (75%), Positives = 192/224 (85%)

Query:     1 MIQGARVQLNGWQQXXXXXXXXXXXLLDPRRADLIAALGETTGRPAFESVLQRMKRSPEG 60
             +I+ ARV L+ WQQ           L+DPRRADLIAALGETTG+PAFE VL+RMK+S EG
Sbjct:     2 IIERARVPLSRWQQAAVAMGSALGALVDPRRADLIAALGETTGKPAFEMVLERMKKSEEG 61

Query:    61 RAVLLERPRVIYEKVGHAWDLPPNTFGAAYASFMGSRNFSPDDRPPVRFMDTDELAYVAM 120
             RA+LLERPRV+ E+VGHAWDLP NTFGAAYA FMGSRNFSPDDRPPVRFM+TDELAYVA 
Sbjct:    62 RAILLERPRVVSEQVGHAWDLPENTFGAAYAKFMGSRNFSPDDRPPVRFMETDELAYVAT 121

Query:   121 RAREVHDFWHTLFGLPTNLIGESALKVIEFQQMYLPMCFLSVIGGSARFSEKQRKLFFQH 180
             RAREVHD WHTLFGLPTNLIGES+LKVIEF+QMYLPMC LSVIGG+ RF+EKQR +F +H
Sbjct:   122 RAREVHDLWHTLFGLPTNLIGESSLKVIEFEQMYLPMCMLSVIGGTVRFNEKQRSMFLKH 181

Query:   181 YFPWAIRAGMRSTDLMCVYYEQHFHEDLEDLRKKWGIVPAPAAP 224
             Y PWA+RAG + TDLMCVYYE+HF EDLE +R+KWGI+PAP  P
Sbjct:   182 YLPWAVRAGRQCTDLMCVYYERHFSEDLEQVRRKWGIIPAPQHP 225

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0006744 "ubiquinone biosynthetic process" evidence=IEA

FB|FBgn0052174 CG32174 [Drosophila melanogaster (taxid:7227)]

 Score = 447 (162.4 bits), Expect = 3.2e-42, P = 3.2e-42
 Identities = 83/214 (38%), Positives = 131/214 (61%)

Query:     6 RVQLNGWQQXXXXXXXXXXXLLDPRRADLIAALGETTGRPAFESVLQRMKRSPEGRAVLL 65
             R++++ +Q+           LL+PRR D+IA LGETTG  A  ++L  M+ S EG+ ++ 
Sbjct:    49 RIEISPFQRLFLGAGSSIAALLNPRRHDMIACLGETTGEDALWTILDTMQASEEGQRIMA 108

Query:    66 ERPRVIYEKVGHAW--DLPPNTFGAAYASFMGSRNFSPDDRPPVRFMDTDELAYVAMRAR 123
             ++PR+    +   +   LPP+TFGAAY  F+     +PD R  VRF++  +LAY+  R R
Sbjct:   109 DKPRIHTSTIDFKYLETLPPDTFGAAYVKFLKDNQVTPDSRMAVRFLEDPKLAYLMTRYR 168

Query:   124 EVHDFWHTLFGLPTNLIGESALKVIEFQQMYLPMCFLSVIGGSARFSEKQRKLFFQHYFP 183
             E HD  HT+  +PTN++GE A+K +E     LPMC+   + G+ R   KQR+ + +HY P
Sbjct:   169 ECHDLIHTVLDMPTNMLGEVAVKWVEALNTGLPMCYGGAVFGAVRLRPKQRRAYLKHYLP 228

Query:   184 WAIRAGMRSTDLMCVYYEQHFHEDLEDLRKKWGI 217
             WA+  G R+  LM VY+E+ + +++ +LR + GI
Sbjct:   229 WALENGKRTKPLMPVYWEKRWEQNIHELRSELGI 262

GO:0006744 "ubiquinone biosynthetic process" evidence=ISS

GO:0005739 "mitochondrion" evidence=ISS

GO:0005743 "mitochondrial inner membrane" evidence=ISS

GO:0003674 "molecular_function" evidence=ND

UNIPROTKB|F1NEN7 COQ4 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 424 (154.3 bits), Expect = 8.7e-40, P = 8.7e-40
 Identities = 87/215 (40%), Positives = 119/215 (55%)

Query:    13 QQXXXXXXXXXXXLLDPRRADLIAALGETTGRPAFESVLQRMKRSPEGRAVLLERPRVIY 72
             Q+           L DP R D++A LGETTG  A   +  RM+  PEG  +L ERPR+  
Sbjct:    46 QKALLAAGSACAALWDPYRHDMVAVLGETTGCLALPKLRDRMRNDPEGYRILQERPRIRL 105

Query:    73 EKVGHA--WDLPPNTFGAAYASFMGSRNFSPDDRPPVRFMDTDELAYVAMRAREVHDFWH 130
               +  A    LP  T G  Y  F+     SPD R P +F+D +ELAYV  R REVHD  H
Sbjct:   106 STLDMARLGGLPDGTLGREYIRFLEDNKVSPDTRMPAKFVDDEELAYVIQRYREVHDLMH 165

Query:   131 TLFGLPTNLIGESALKVIEFQQMYLPMCFLSVIGGSARFSEKQRKLFFQHYFPWAIRAGM 190
             TL G+PTN++GE  +K  E  Q  LPMC L    G  R + ++ ++      PWA+R+G 
Sbjct:   166 TLLGMPTNMLGEVVVKWFEAVQTGLPMCVLGAAFGPVRLNARKLQVLATELLPWAVRSGR 225

Query:   191 RSTDLMCVYYEQHFHEDLEDLRKKWGIVPAPAAPV 225
              ++ ++ VYYEQ + + +E LR++ GI P PA  V
Sbjct:   226 NASCVLNVYYEQRWEQSVESLREEIGIFPPPAVCV 260

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0006744 "ubiquinone biosynthetic process" evidence=IEA

UNIPROTKB|F1RR97 LOC100628217 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 416 (151.5 bits), Expect = 6.1e-39, P = 6.1e-39
 Identities = 86/211 (40%), Positives = 116/211 (54%)

Query:    13 QQXXXXXXXXXXXLLDPRRADLIAALGETTGRPAFESVLQRMKRSPEGRAVLLERPRVIY 72
             Q+           L DP R D++A LGETTGR   + +  +MKR PEG  +L ERPR+  
Sbjct:    48 QKALLAAGSAVMALYDPYRHDMVAVLGETTGRRTLKFLRDQMKRDPEGAQILQERPRISM 107

Query:    73 EKVG--HAWDLPPNTFGAAYASFMGSRNFSPDDRPPVRFMDTDELAYVAMRAREVHDFWH 130
               +       LP  +FG  Y  F+     SPD R P RF+D +ELAYV  R REVHD  H
Sbjct:   108 STLDLEKLRSLPEGSFGCEYLRFLDVNRVSPDTRAPTRFVDDEELAYVIQRYREVHDMVH 167

Query:   131 TLFGLPTNLIGESALKVIEFQQMYLPMCFLSVIGGSARFSEKQRKLFFQHYFPWAIRAGM 190
             TL G+PTN+ GE  +K  E  Q  LPMC LS + G  R S +  ++      PWA++ G 
Sbjct:   168 TLLGMPTNIPGEIVVKWFEAVQTGLPMCVLSALFGPIRLSAQSLQVLVSELIPWAVQNGR 227

Query:   191 RSTDLMCVYYEQHFHEDLEDLRKKWGIVPAP 221
             R+  L+ +YYE+ + + L  LR++ GI   P
Sbjct:   228 RAPCLLHLYYERRWEQPLRALRQELGITEPP 258

GO:0006744 "ubiquinone biosynthetic process" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

RGD|1304638 Coq4 "coenzyme Q4 homolog (S. cerevisiae)" [Rattus norvegicus (taxid:10116)]

 Score = 413 (150.4 bits), Expect = 1.3e-38, P = 1.3e-38
 Identities = 82/198 (41%), Positives = 114/198 (57%)

Query:    26 LLDPRRADLIAALGETTGRPAFESVLQRMKRSPEGRAVLLERPRVIYEKV--GHAWDLPP 83
             L +P R D++A LGETTG    + +  +MK+ PEG  +L ERPR+    +       LP 
Sbjct:    61 LYNPYRHDMVAVLGETTGCHTLKFLRDQMKKDPEGAQILQERPRISLSTLDLSKLQSLPE 120

Query:    84 NTFGAAYASFMGSRNFSPDDRPPVRFMDTDELAYVAMRAREVHDFWHTLFGLPTNLIGES 143
              + G  Y  F+ +   SPD R P RF+D +ELAYV  R REVHD  HTL G+PTN++GE 
Sbjct:   121 GSLGREYLRFLNANKVSPDTRAPTRFVDDEELAYVIQRYREVHDMLHTLLGMPTNMLGEV 180

Query:   144 ALKVIEFQQMYLPMCFLSVIGGSARFSEKQRKLFFQHYFPWAIRAGMRSTDLMCVYYEQH 203
              +K  E  Q  LPMC L  + G  R   +  ++ F    PWAI+ G R+  ++ +YYEQ 
Sbjct:   181 VVKWFEAVQTGLPMCILGALFGPVRLRAQSLQVLFSELIPWAIQNGRRAPCVLNIYYEQR 240

Query:   204 FHEDLEDLRKKWGIVPAP 221
             + + L  LR++ GI P P
Sbjct:   241 WEQPLTALREELGISPPP 258

GO:0005739 "mitochondrion" evidence=ISO

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0006744 "ubiquinone biosynthetic process" evidence=IEA

MGI|MGI:1098826 Coq4 "coenzyme Q4 homolog (yeast)" [Mus musculus (taxid:10090)]

 Score = 408 (148.7 bits), Expect = 4.3e-38, P = 4.3e-38
 Identities = 82/198 (41%), Positives = 113/198 (57%)

Query:    26 LLDPRRADLIAALGETTGRPAFESVLQRMKRSPEGRAVLLERPRVIYEKV--GHAWDLPP 83
             L +P R D++A LGETTG    + +  +MK+ PEG  +L ERPR+    +       LP 
Sbjct:    62 LYNPYRHDMVAVLGETTGCHTLKFLRDQMKKDPEGAQILQERPRISLSTLDLSKLQSLPE 121

Query:    84 NTFGAAYASFMGSRNFSPDDRPPVRFMDTDELAYVAMRAREVHDFWHTLFGLPTNLIGES 143
              + G  Y  F+     SPD R P RF+D +ELAYV  R REVHD  HTL G+PTN++GE 
Sbjct:   122 GSLGREYLRFLDVNKVSPDTRAPTRFVDDEELAYVIQRYREVHDMLHTLLGMPTNMLGEV 181

Query:   144 ALKVIEFQQMYLPMCFLSVIGGSARFSEKQRKLFFQHYFPWAIRAGMRSTDLMCVYYEQH 203
              +K  E  Q  LPMC L  + G  R   +  ++ F    PWAI+ G R+  ++ +YYEQ 
Sbjct:   182 VVKWFEAVQTGLPMCILGALFGPIRLRTQSLQVLFSELIPWAIQNGRRAPCVLNIYYEQR 241

Query:   204 FHEDLEDLRKKWGIVPAP 221
             + + L  LR++ GI P P
Sbjct:   242 WEQPLTALREELGISPPP 259

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=IDA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0006744 "ubiquinone biosynthetic process" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA

UNIPROTKB|E2RSQ6 COQ4 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 402 (146.6 bits), Expect = 1.9e-37, P = 1.9e-37
 Identities = 81/211 (38%), Positives = 117/211 (55%)

Query:    13 QQXXXXXXXXXXXLLDPRRADLIAALGETTGRPAFESVLQRMKRSPEGRAVLLERPRVIY 72
             Q+           L +P R D++A LGETTG  A + +  +M++ PEG  +L +RPR+  
Sbjct:    48 QKALLAAGSAGMALYNPYRHDMVAVLGETTGYYALKFLRDQMRKDPEGAEILQKRPRISL 107

Query:    73 EKVG--HAWDLPPNTFGAAYASFMGSRNFSPDDRPPVRFMDTDELAYVAMRAREVHDFWH 130
               +       LP  + G  Y  F+     SPD R P RF+D +ELAYV  R REVHD  H
Sbjct:   108 STLDLDKLRSLPEGSLGQEYLRFLDVNRVSPDTRAPTRFVDDEELAYVIQRYREVHDILH 167

Query:   131 TLFGLPTNLIGESALKVIEFQQMYLPMCFLSVIGGSARFSEKQRKLFFQHYFPWAIRAGM 190
             TL G+PTNL+GE  +K  E  Q +LPMC L  + G  R S +  ++      PWA++ G 
Sbjct:   168 TLLGMPTNLLGEITVKWFEAVQTHLPMCILGALFGPIRLSAQSLQVLISELIPWAVQNGH 227

Query:   191 RSTDLMCVYYEQHFHEDLEDLRKKWGIVPAP 221
             R+  ++ +YYE+ + + L  LR++ GI  AP
Sbjct:   228 RAPCVLNLYYERRWEQPLRALREELGITDAP 258

GO:0006744 "ubiquinone biosynthetic process" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

UNIPROTKB|J9NT53 COQ4 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 401 (146.2 bits), Expect = 2.4e-37, P = 2.4e-37
 Identities = 80/198 (40%), Positives = 115/198 (58%)

Query:    26 LLDPRRADLIAALGETTGRPAFESVLQRMKRSPEGRAVLLERPRVIYEKVG--HAWDLPP 83
             L +P R D++A LGETTG  A + +  +M++ PEG  +L +RPR+    +       LP 
Sbjct:     3 LYNPYRHDMVAVLGETTGYYALKFLRDQMRKDPEGAEILQKRPRISLSTLDLDKLRSLPE 62

Query:    84 NTFGAAYASFMGSRNFSPDDRPPVRFMDTDELAYVAMRAREVHDFWHTLFGLPTNLIGES 143
              + G  Y  F+     SPD R P RF+D +ELAYV  R REVHD  HTL G+PTNL+GE 
Sbjct:    63 GSLGQEYLRFLDVNRVSPDTRAPTRFVDDEELAYVIQRYREVHDILHTLLGMPTNLLGEI 122

Query:   144 ALKVIEFQQMYLPMCFLSVIGGSARFSEKQRKLFFQHYFPWAIRAGMRSTDLMCVYYEQH 203
              +K  E  Q +LPMC L  + G  R S +  ++      PWA++ G R+  ++ +YYE+ 
Sbjct:   123 TVKWFEAVQTHLPMCILGALFGPIRLSAQSLQVLISELIPWAVQNGHRAPCVLNLYYERR 182

Query:   204 FHEDLEDLRKKWGIVPAP 221
             + + L  LR++ GI  AP
Sbjct:   183 WEQPLRALREELGITDAP 200

GO:0006744 "ubiquinone biosynthetic process" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

UNIPROTKB|Q9Y3A0 COQ4 "Ubiquinone biosynthesis protein COQ4 homolog, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 398 (145.2 bits), Expect = 4.9e-37, P = 4.9e-37
 Identities = 80/211 (37%), Positives = 113/211 (53%)

Query:    13 QQXXXXXXXXXXXLLDPRRADLIAALGETTGRPAFESVLQRMKRSPEGRAVLLERPRVIY 72
             Q+           L +P R D++A LGETTG    + +  +M+R PEG  +L ERPR+  
Sbjct:    48 QKGLLAAGSAAMALYNPYRHDMVAVLGETTGHRTLKVLRDQMRRDPEGAQILQERPRIST 107

Query:    73 EKV--GHAWDLPPNTFGAAYASFMGSRNFSPDDRPPVRFMDTDELAYVAMRAREVHDFWH 130
               +  G    LP  + G  Y  F+     SPD R P RF+D +ELAYV  R REVHD  H
Sbjct:   108 STLDLGKLQSLPEGSLGREYLRFLDVNRVSPDTRAPTRFVDDEELAYVIQRYREVHDMLH 167

Query:   131 TLFGLPTNLIGESALKVIEFQQMYLPMCFLSVIGGSARFSEKQRKLFFQHYFPWAIRAGM 190
             TL G+PTN++GE  +K  E  Q  LPMC L    G  R   +  ++      PWA++ G 
Sbjct:   168 TLLGMPTNILGEIVVKWFEAVQTGLPMCILGAFFGPIRLGAQSLQVLVSELIPWAVQNGR 227

Query:   191 RSTDLMCVYYEQHFHEDLEDLRKKWGIVPAP 221
             R+  ++ +YYE+ + + L  LR++ GI   P
Sbjct:   228 RAPCVLNLYYERRWEQSLRALREELGITAPP 258

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0006744 "ubiquinone biosynthetic process" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

ASPGD|ASPL0000075453 AN4757 [Emericella nidulans (taxid:162425)]

 Score = 393 (143.4 bits), Expect = 1.7e-36, P = 1.7e-36
 Identities = 86/218 (39%), Positives = 124/218 (56%)

Query:     7 VQLNGWQQXXXXXXXXXXXLLDPRRADLIAALGETTGRPAFESVLQ-RMKRSPEGRAVLL 65
             V L  +++           LL+PRRADLIA LGE T  P F   L+  M + P GR +L 
Sbjct:    44 VPLGFFEKGFLAVGSAVGALLNPRRADLIATLGEVTATPYFIYRLRDAMLQDPTGRQILR 103

Query:    66 ERPRVIYEKVGHAW--DLPPNTFGAAYASFMGSRNFSPDDRPPVRFMDTDELAYVAMRAR 123
             +RPR+  + +   +   LP N+ G  YA+++     SPD R  V+++D  E AYV  R R
Sbjct:   104 DRPRITSQTLPLPYLRSLPENSVGRTYATWLDREGVSPDTRDNVQYIDDPECAYVMQRYR 163

Query:   124 EVHDFWHTLFGLPTNLIGESALKVIEFQQMYLPMCFLSVIGGSARFSEKQRKLFFQHYFP 183
             E HDF+H + GLPT + GE ALK  EF    +PM  LS+   S R    +R+  F  Y P
Sbjct:   164 ECHDFYHAVTGLPTFVEGELALKAFEFLNTLIPMTGLSM-AASVRLKPAERERLFSLYLP 222

Query:   184 WAIRAGMRSTDLMCVYYEQHFHEDLEDLRKKWGIVPAP 221
             WA+R+G+ S +L+ VY+E+   +D+++LR + GI   P
Sbjct:   223 WAVRSGLNSKELINVYWEKILEKDVDELRAELGIEKPP 260

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

GO:0071585 "detoxification of cadmium ion" evidence=IEA

GO:0006744 "ubiquinone biosynthetic process" evidence=IEA

GO:0071276 "cellular response to cadmium ion" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9ZPR0	COQ4_ARATH	No assigned EC number	0.7901	0.9955	0.9911	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: gw1.X.820.1 hypothetical protein (224 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	225
pfam05019	222	pfam05019, Coq4, Coenzyme Q (ubiquinone) biosynthe	1e-118
COG5031	235	COG5031, COQ4, Uncharacterized protein involved in	9e-39

>gnl|CDD|191164 pfam05019, Coq4, Coenzyme Q (ubiquinone) biosynthesis protein Coq4

 Score =  336 bits (864), Expect = e-118
 Identities = 114/222 (51%), Positives = 138/222 (62%), Gaps = 2/222 (0%)

Query: 3   QGARVQLNGWQQVAVAVGSAVGALLDPRRADLIAALGETTGRPAFESVLQRMKRSPEGRA 62
               V L   Q++ +AVGSAVGALLDPRR DLIAALGETT  PA E +  +M   PEGR 
Sbjct: 1   YPGHVPLTPLQRLLLAVGSAVGALLDPRRGDLIAALGETTALPALERLRDQMLSDPEGRR 60

Query: 63  VLLERPRVIYEKVGHAW--DLPPNTFGAAYASFMGSRNFSPDDRPPVRFMDTDELAYVAM 120
           +L ERPR+  E +  A    LP NTFG  YA F+     SPD R PVRF+D  ELAYV  
Sbjct: 61  ILRERPRITSETLDLAKLRSLPENTFGRTYAKFLDREGVSPDTRAPVRFIDDPELAYVMQ 120

Query: 121 RAREVHDFWHTLFGLPTNLIGESALKVIEFQQMYLPMCFLSVIGGSARFSEKQRKLFFQH 180
           R RE HDF+H L GLPTN+ GE A+K  EF    LPMC L  + G  R   KQR+     
Sbjct: 121 RYRECHDFYHALTGLPTNMEGEVAVKAFEFANTGLPMCGLGALFGPLRLKPKQRQRLLNI 180

Query: 181 YFPWAIRAGMRSTDLMCVYYEQHFHEDLEDLRKKWGIVPAPA 222
           Y PWAIR G+ +  L+ VY+E+   +D+E+LRK+ GI P P 
Sbjct: 181 YLPWAIRNGLNAKPLINVYWEKRLEKDIEELRKELGIEPPPD 222

Coq4p was shown to peripherally associate with the matrix face of the mitochondrial inner membrane. The putative mitochondrial- targeting sequence present at the amino-terminus of the polypeptide efficiently imported it to mitochondria. The function of Coq4p is unknown, although its presence is required to maintain a steady-state level of Coq7p, another component of the Q biosynthetic pathway. The overall structure of Coq4 is alpha helical and shows resemblance to haemoglobin/myoglobin (information from TOPSAN). Length = 222

>gnl|CDD|227364 COG5031, COQ4, Uncharacterized protein involved in ubiquinone biosynthesis [Coenzyme metabolism]

 Score =  133 bits (337), Expect = 9e-39
 Identities = 63/212 (29%), Positives = 96/212 (45%), Gaps = 13/212 (6%)

Query: 18  AVGSAVGALLDPRRA--DLIAALGETTGRP-AFESVLQRMKRSPEGRAVLLERPRVIYEK 74
              SA  +L+ P     D I  LG+   +P   +  +  M   PEGR +  ERP      
Sbjct: 26  LAISAFLSLVAPEDGNFDPIFKLGDALDQPEFLQLAVDEMLSDPEGRQLFKERP---TLG 82

Query: 75  VGHAWDL---PPNTFGAAYASFMGSRNFSPDDRPPVRFMDTDELAYVAMRAREVHDFWHT 131
           V     L   P NT G  YA +M    F PD R PV      ++AY+ MR RE HD +H 
Sbjct: 83  VLDLDQLAQLPENTLGYVYADWMKREGFDPDTRKPV--PVDPDIAYLKMRWRETHDIYHA 140

Query: 132 LFGLPTNLIGESALKVIEFQQMYLP--MCFLSVIGGSARFSEKQRKLFFQHYFPWAIRAG 189
           + G  T++IGE  L+     Q+ LP  +  L+      R  + +       Y P   R G
Sbjct: 141 VTGFDTDIIGEIGLQAFYLAQLGLPRSVALLAKNLLPLRLYQPELSRQLMDYIPRGWRMG 200

Query: 190 MRSTDLMCVYYEQHFHEDLEDLRKKWGIVPAP 221
           +++  L+   +E+ + + LE++R +  I+  P
Sbjct: 201 LQAKPLIAQKWEELWEKPLEEVRTELNIILPP 232

Length = 235

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	225
KOG3244	267	consensus Protein involved in ubiquinone biosynthe	100.0
PF05019	222	Coq4: Coenzyme Q (ubiquinone) biosynthesis protein	100.0
COG5031	235	COQ4 Uncharacterized protein involved in ubiquinon	100.0

>KOG3244 consensus Protein involved in ubiquinone biosynthesis [Coenzyme transport and metabolism]

Probab=100.00  E-value=6.3e-75  Score=489.92  Aligned_cols=221  Identities=52%  Similarity=0.925  Sum_probs=216.7

Q ss_pred             CCcccCChHHHHHHHHHHHHHhhcCCCCchhhHHhhhccCc-hhHHHHHHHHhCCHHHHHHHhcCCCCCcccch--hhcc
Q 046453            4 GARVQLNGWQQVAVAVGSAVGALLDPRRADLIAALGETTGR-PAFESVLQRMKRSPEGRAVLLERPRVIYEKVG--HAWD   80 (225)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~l~dp~~~d~v~~l~e~~~~-~a~~~~~~~m~~~p~g~~ll~erp~~~~~~~d--~l~~   80 (225)
                      ++|+|+|++||+++++||+++++.||.|+|||+++||+||. ++++.+.++|++|++||+||+|||+|++.++|  .|++
T Consensus        40 ~~hvPlsp~qr~lL~aGSa~~al~~P~RgDmIa~LGEtTg~p~~Le~l~~~M~~d~~GrrIL~ekPRi~t~tld~~~L~~  119 (267)
T KOG3244|consen   40 RGHVPLSPLQRLLLGAGSAIMALVDPRRGDMIAALGETTGKPPALENLLDRMLSDEEGRRILLEKPRITTETLDLKKLRT  119 (267)
T ss_pred             cCCCCCCHHHHHHHHHhHHHHHhcCcccccHHHHhccccCCchHHHHHHHHHhcCHHHHHHHHhCCCccccccChHHHHh
Confidence            79999999999999999999999999999999999999998 78999999999999999999999999999988  7889


Q ss_pred             CCCCChHHHHHHHhhcCCCCCCCCCCCccCCcchHHHHHhhhccccchhhhccCCCCCcchhHHHHHHHHhcccchHHHH
Q 046453           81 LPPNTFGAAYASFMGSRNFSPDDRPPVRFMDTDELAYVAMRAREVHDFWHTLFGLPTNLIGESALKVIEFQQMYLPMCFL  160 (225)
Q Consensus        81 lP~gSLG~~Y~~fl~~~g~~p~~~~~v~~~~~~~~~y~~~R~r~~HDi~HvLtG~~t~~~GEi~v~~F~~~q~~~p~~~l  160 (225)
                      ||+||||++|++||++++++||.|++|+|++|++.+||++|||||||++|+++|++|+++||+++||||+.|+|+|||++
T Consensus       120 LP~nTfG~~Y~~fl~~~nvsPDtR~pvrFidd~e~AYvmqRYRE~HDf~Hti~~mPTNilGEv~vK~~E~~q~GLPMc~l  199 (267)
T KOG3244|consen  120 LPENTFGKAYVKFLDRENVSPDTRPPVRFIDDPELAYVMQRYRECHDFYHTILNMPTNILGEVTVKWLEGVQMGLPMCIL  199 (267)
T ss_pred             CCCccHHHHHHHHHhhcCCCCCCCCCccccCCHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHhcCCchHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhccccCHHHHHHHHHhHHHHHHHhcCCCCcccCcchhhhhhccHHHHHHHcCCCCCCCCC
Q 046453          161 SVIGGSARFSEKQRKLFFQHYFPWAIRAGMRSTDLMCVYYEQHFHEDLEDLRKKWGIVPAPAAP  224 (225)
Q Consensus       161 ~~~~g~~~~~~~~~~~l~~~~~~~a~~~G~~a~~l~~~~wE~~~e~pL~e~R~~lgI~~~~~~~  224 (225)
                      +++||++|+++++++.+++.|+|||++.|++|++||++|||++|+++|+++|+|+||+++|..+
T Consensus       200 g~ifG~~RL~~kqr~~l~~~ylPWavr~G~~ak~lm~vYwE~~~e~dl~~vR~el~It~~p~~~  263 (267)
T KOG3244|consen  200 GAIFGPVRLNEKQRSRLLKHYLPWAVRNGLNAKPLMNVYWERHFEKDLEEVRKELGITPAPQLP  263 (267)
T ss_pred             hhccchhhcCHHHHHHHHHhhccHHHhcCcCCCcchhhHHHHHHHHHHHHHHHHhCCccCcccc
Confidence            9999999999999999999999999999999999999999999999999999999999988643

>PF05019 Coq4: Coenzyme Q (ubiquinone) biosynthesis protein Coq4; InterPro: IPR007715 Coenzyme Q biosynthesis Coq4p (also known as Ubiquinone biosynthesis protein COQ4) was shown to peripherally associate with the matrix face of the mitochondrial inner membrane

Probab=100.00  E-value=7e-76  Score=504.39  Aligned_cols=219  Identities=48%  Similarity=0.822  Sum_probs=150.6

Q ss_pred             CCcccCChHHHHHHHHHHHHHhhcCCCCchhhHHhhhccCchhHHHHHHHHhCCHHHHHHHhcCCCCCcccc--hhhccC
Q 046453            4 GARVQLNGWQQVAVAVGSAVGALLDPRRADLIAALGETTGRPAFESVLQRMKRSPEGRAVLLERPRVIYEKV--GHAWDL   81 (225)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~l~dp~~~d~v~~l~e~~~~~a~~~~~~~m~~~p~g~~ll~erp~~~~~~~--d~l~~l   81 (225)
                      .+|||+|++||++++++|++.++.||+|+|+||+++|+++++++++++++|++||+||+||+|||++++.++  |.|++|
T Consensus         2 ~~~~p~~~~~~~~l~~~sa~~~l~~p~~~d~V~~l~e~~~~~al~~~~~~m~~dp~Gr~il~erp~i~~~~~d~~~L~~l   81 (222)
T PF05019_consen    2 PGHIPLSPLQKALLAAGSAVRALRDPERTDMVAALGEATGGPALERMRQRMLSDPEGRRILEERPRITSSTLDLDYLRAL   81 (222)
T ss_dssp             -------------------------------HHHHHHHHS-HHHHHHHHHHTTSHHHHHHHHH-------S--HHHHCTS
T ss_pred             ccccccccccccccccccccccccchhhhhHHHHHHHhccHHHHHHHHHHHHcCHHHHHHHHcCCCCCcccCCHHHHHhC
Confidence            589999999999999999999999999999999999999999999999999999999999999999998766  678899


Q ss_pred             CCCChHHHHHHHhhcCCCCCCCCCCCccCCcchHHHHHhhhccccchhhhccCCCCCcchhHHHHHHHHhcccchHHHHH
Q 046453           82 PPNTFGAAYASFMGSRNFSPDDRPPVRFMDTDELAYVAMRAREVHDFWHTLFGLPTNLIGESALKVIEFQQMYLPMCFLS  161 (225)
Q Consensus        82 P~gSLG~~Y~~fl~~~g~~p~~~~~v~~~~~~~~~y~~~R~r~~HDi~HvLtG~~t~~~GEi~v~~F~~~q~~~p~~~l~  161 (225)
                      |+|||||+|++||+++||+||++.+|++++|+|.+||++|||+||||||||||||||++||++||||+++|+++|+++++
T Consensus        82 P~gTlG~~Y~~fm~~~gl~pd~r~~v~~v~d~e~aYv~~R~re~HDi~HvLtG~~td~~GEi~lk~f~~~Q~~~P~~~l~  161 (222)
T PF05019_consen   82 PEGTLGRAYADFMDRNGLSPDGRPPVRFVDDPELAYVMQRYRETHDIWHVLTGYGTDVLGEIALKAFEFAQTGLPMALLG  161 (222)
T ss_dssp             -TTBHHHHHHHHHHHTT------------SHSHHHHHHHHHHHCHHHHHHHHT--SSHHHHHHHHHHHHHHS-TCHCHHH
T ss_pred             cCCCcHHHHHHHHHHcCCcccCCCCCcCcCCcHHHHHHHHHHcCcchhhHhcCCCCCccchHHHHHHHHHHHHhHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhccccCHHHHHHHHHhHHHHHHHhcCCCCcccCcchhhhhhccHHHHHHHcCCCCCCC
Q 046453          162 VIGGSARFSEKQRKLFFQHYFPWAIRAGMRSTDLMCVYYEQHFHEDLEDLRKKWGIVPAPA  222 (225)
Q Consensus       162 ~~~g~~~~~~~~~~~l~~~~~~~a~~~G~~a~~l~~~~wE~~~e~pL~e~R~~lgI~~~~~  222 (225)
                      +++|++++++.++..++..+++||+++|++|++|++++||++|++||+|||++|||+++|.
T Consensus       162 ~~~g~~~l~~~~~~~~~~~~~~~a~~~G~~a~~L~~~~wE~~~e~pLee~R~~LgI~~~p~  222 (222)
T PF05019_consen  162 ALFGPLRLKPEERQRLLQRYLPWAIRRGRRAKPLMAVYWEELWEKPLEEVRRELGIEPPPD  222 (222)
T ss_dssp             HHHHHHHHHHHHHGGHHHHHHHHHHHHHHCS--STT--GGGSTTSBHHHHHHHCTS-----
T ss_pred             HHHHHHhccHHHHHHHHHHHHHHHHHhhhcCCccccchHHHhhCCCHHHHHHHcCCCCCCC
Confidence            9999999999888888888999999999999999999999999999999999999999874

The putative mitochondrial- targeting sequence present at the N terminus of the polypeptide efficiently imports it to mitochondria. The function of Coq4p is unknown, although its presence is required to maintain a steady-state level of Coq7p, another component of the Q biosynthetic pathway [].; GO: 0006744 ubiquinone biosynthetic process; PDB: 3MSQ_D 3KB4_B.

>COG5031 COQ4 Uncharacterized protein involved in ubiquinone biosynthesis [Coenzyme metabolism]

Probab=100.00  E-value=1.2e-57  Score=383.00  Aligned_cols=217  Identities=29%  Similarity=0.484  Sum_probs=201.1

Q ss_pred             CCcccCChHHHHHHHHHHHHHhhcCCCCc--hhhHHhhhccCch-hHHHHHHHHhCCHHHHHHHhcCCCCCcccchhhcc
Q 046453            4 GARVQLNGWQQVAVAVGSAVGALLDPRRA--DLIAALGETTGRP-AFESVLQRMKRSPEGRAVLLERPRVIYEKVGHAWD   80 (225)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~l~dp~~~--d~v~~l~e~~~~~-a~~~~~~~m~~~p~g~~ll~erp~~~~~~~d~l~~   80 (225)
                      ++|+|++..++-.+++.+++.++..|+++  |+|++++++++.+ +++++.+.|++||+|+++++|||.....++|+|.+
T Consensus        12 ~~~~p~~~~~~~~l~a~~~f~~l~~~~dg~~d~I~~L~dal~~p~~lq~~~~~m~~dp~g~~~fkerp~~~~~dl~~L~q   91 (235)
T COG5031          12 PGHVPLSINNDQFLLAISAFLSLVAPEDGNFDPIFKLGDALDQPEFLQLAVDEMLSDPEGRQLFKERPTLGVLDLDQLAQ   91 (235)
T ss_pred             CCCCcccccchHHHHHHHHHHHhhcCCCCCcchHHHHHHhhcCHHHHHHHHHHHhcChHHHHHHHhCCCCcccCHHHHHh
Confidence            68999999999999999999999999998  8999999998865 67999999999999999999999988999999999


Q ss_pred             CCCCChHHHHHHHhhcCCCCCCCCCCCccCCcchHHHHHhhhccccchhhhccCCCCCcchhHHHHHHHHhcccch--HH
Q 046453           81 LPPNTFGAAYASFMGSRNFSPDDRPPVRFMDTDELAYVAMRAREVHDFWHTLFGLPTNLIGESALKVIEFQQMYLP--MC  158 (225)
Q Consensus        81 lP~gSLG~~Y~~fl~~~g~~p~~~~~v~~~~~~~~~y~~~R~r~~HDi~HvLtG~~t~~~GEi~v~~F~~~q~~~p--~~  158 (225)
                      ||+||||+.|+++|+++||+|+.+.++  ++|+|.+|+++|+|+||||||++||++||.+|||+++||+.+|++.|  +.
T Consensus        92 LP~~TLGyvYad~mk~~~~~P~~~~~v--~vd~d~ayl~~r~retHDiyH~Vtg~dt~i~GEI~LqAfy~aql~~p~~~a  169 (235)
T COG5031          92 LPENTLGYVYADWMKREGFDPDTRKPV--PVDPDIAYLKMRWRETHDIYHAVTGFDTDIIGEIGLQAFYLAQLGLPRSVA  169 (235)
T ss_pred             CCCcchhhhhHHHHHHhcCCCCCCCCC--CcCCHHHHHHHHHhhhhhHHHHHhCCCCCCcchhhhhhhhhhhcCccHHHH
Confidence            999999999999999999999999886  47999999999999999999999999999999999999999999999  66


Q ss_pred             HHHHHhhccccCHHHHHHHHHhHHHHHHHhcCCCCcccCcchhhhhhccHHHHHHHcCCCCCCC
Q 046453          159 FLSVIGGSARFSEKQRKLFFQHYFPWAIRAGMRSTDLMCVYYEQHFHEDLEDLRKKWGIVPAPA  222 (225)
Q Consensus       159 ~l~~~~g~~~~~~~~~~~l~~~~~~~a~~~G~~a~~l~~~~wE~~~e~pL~e~R~~lgI~~~~~  222 (225)
                      +++..+++++++..+....+..+++|||++|++|++|++++||+.||+||+|||++|||..++.
T Consensus       170 lla~~l~~~~Ly~~e~~~~~~~~I~~gw~mGl~aKpLi~~~We~~wekpl~evR~~Lnii~p~~  233 (235)
T COG5031         170 LLAKNLLPLRLYQPELSRQLMDYIPRGWRMGLQAKPLIAQKWEELWEKPLEEVRTELNIILPPQ  233 (235)
T ss_pred             HHHHhhhHHhhcCHHHhHHHHHHHHHHHHccccCcchHHHHHHHHhhCcHHHHHHHhcccCCCC
Confidence            6666677778777777776777899999999999999999999999999999999999776654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	225
3msq_A	224	Crystal Structure Of A Putative Ubiquinone Biosynth		1e-05
3kb4_A	225	Crystal Structure Of The Alr8543 Protein In Complex		4e-05

>pdb|3MSQ|A Chain A, Crystal Structure Of A Putative Ubiquinone Biosynthesis Protein (Npun02000094) From Nostoc Punctiforme Pcc 73102 At 2.85 A Resolution Length = 224

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/125 (27%), Positives = 52/125 (41%), Gaps = 6/125 (4%)
Query: 51  LQRMKRSPEGRAVLLERPRVIYEKVGHAWDLPPNTFGAAYASFMGSRNFSPD--DRPPVR 108
           +  +K+ PE  A+  ER       +     LP  T G  YA    +R F P    + PV 
Sbjct: 53  VDELKKIPEVNALFSERWLPAPFNLDDLAKLPEGTLGHVYAREXKARGFDPYFYKKVPV- 111
Query: 109 FMDTDELAYVAMRAREVHDFWHTLFGLPTNLIGESALKVIEFQQMYLPMCFLSVIGGSAR 168
               D+++Y+    R  HD +H + G  TN+ GE  L+     Q  +P+    +  G   
Sbjct: 112 ---VDDISYLKXLWRSTHDIYHVVAGFDTNVFGEIGLQAFFLAQTPIPISVXLLSFGXVX 168
Query: 169 FSEKQ 173
            S  Q
Sbjct: 169 ISLYQ 173

>pdb|3KB4|A Chain A, Crystal Structure Of The Alr8543 Protein In Complex With Geranylgeranyl Monophosphate And Magnesium Ion From Nostoc Sp. Pcc 7120, Northeast Structural Genomics Consortium Target Nsr141 Length = 225

Iteration: 1
 Score = 44.7 bits (104), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 30/120 (25%), Positives = 46/120 (38%), Gaps = 4/120 (3%)
Query: 35  IAALGETTGRP-AFESVLQRMKRSPEGRAVLLERPRVIYEKVGHAWDLPPNTFGAAYASF 93
           I  L      P   + V+  +  +P+G+    +RP +    +     LP  T G  YA  
Sbjct: 31  IGKLSHVLNDPDTLQKVVAVLSLTPQGKQAFEDRPXLGKIDLEQLHQLPNYTLGYXYADH 90
Query: 94  MGSRNFSPDDRPPVRFMDTDELAYVAMRAREVHDFWHTLFGLPTNLIGESALKVIEFQQM 153
                 +P   PPV         ++A    E HD WH + G  T+  GE  L+     Q+
Sbjct: 91  XIRNQLTP---PPVNENVNHPFXFLAAHLGETHDIWHVVTGCDTDKPGEVKLEAFYTAQL 147
  Database: pdbaa

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	225
3kb4_A	225	ALR8543 protein; alpha-beta protein., structural g	2e-63
3msq_A	224	Putative ubiquinone biosynthesis protein; COQ4 sup	9e-61

>3kb4_A ALR8543 protein; alpha-beta protein., structural genomics, PSI-2, protein STR initiative, northeast structural genomics consortium, NESG, function; HET: GR0; 2.41A {Nostoc SP} Length = 225

 Score =  195 bits (497), Expect = 2e-63
 Identities = 43/218 (19%), Positives = 76/218 (34%), Gaps = 9/218 (4%)

Query: 13  QQVAVAVGSAVGALLDPRRADL--IAALGETT-GRPAFESVLQRMKRSPEGRAVLLERPR 69
           Q    A+  +   L+     +   I  L          + V+  +  +P+G+    +RP 
Sbjct: 7   QSQETAILESFLELVKSPYGNFASIGKLSHVLNDPDTLQKVVAVLSLTPQGKQAFEDRPM 66

Query: 70  VIYEKVGHAWDLPPNTFGAAYASFMGSRNFSPDDRPPVRFMDTDELAYVAMRAREVHDFW 129
           +    +     LP  T G  YA  M     +P    PV         ++A    E HD W
Sbjct: 67  LGKIDLEQLHQLPNYTLGYMYADHMIRNQLTPP---PVNENVNHPFMFLAAHLGETHDIW 123

Query: 130 HTLFGLPTNLIGESALKVIEFQQMYLPMCFLSVIGGSARFSEKQRKLFFQHYF---PWAI 186
           H + G  T+  GE  L+     Q+     FL+++  +   +        +          
Sbjct: 124 HVVTGCDTDKPGEVKLEAFYTAQLIPDRLFLALLAKNLLKTAMYEVELCEQILDGLTQGW 183

Query: 187 RAGMRSTDLMCVYYEQHFHEDLEDLRKKWGIVPAPAAP 224
             G R+  L  + + + +   LE+L+    IVP     
Sbjct: 184 MMGKRAKPLFGIEWNKLWETPLEELQTSLNIVPILEHH 221

>3msq_A Putative ubiquinone biosynthesis protein; COQ4 superfamily, structural genomics, joint center for STRU genomics, JCSG; 2.85A {Nostoc punctiforme} Length = 224

 Score =  189 bits (480), Expect = 9e-61
 Identities = 43/207 (20%), Positives = 79/207 (38%), Gaps = 6/207 (2%)

Query: 17  VAVGSAVGALLDPRRADLIAALGETT-GRPAFESVLQRMKRSPEGRAVLLERPRVIYEKV 75
           +   ++    +     D +    +        +  +  +K+ PE  A+  ER       +
Sbjct: 18  IQFLASSAQKIGDGNTDRVFDFEDALDQTQMAQLAVDELKKIPEVNALFSERWLPAPFNL 77

Query: 76  GHAWDLPPNTFGAAYASFMGSRNFSPDDRPPVRFMDTDELAYVAMRAREVHDFWHTLFGL 135
                LP  T G  YA  M +R F P     V     D+++Y+ M  R  HD +H + G 
Sbjct: 78  DDLAKLPEGTLGHVYAREMKARGFDPYFYKKVPV--VDDISYLKMLWRSTHDIYHVVAGF 135

Query: 136 PTNLIGESALKVIEFQQMYLPMCFLSVIGGSARFSEKQRKLF--FQHYFPWAIRAGMRST 193
            TN+ GE  L+     Q  +P+  + +  G    S  Q   F           R G  + 
Sbjct: 136 DTNVFGEIGLQAFFLAQTPIPISVMLLSFGMVMISLYQPTNFKALMTEISRGYRVGSHTP 195

Query: 194 -DLMCVYYEQHFHEDLEDLRKKWGIVP 219
             L+   ++Q +   + ++R++ G+  
Sbjct: 196 GKLIAQKWDQLWDVQVSEIRERLGVNS 222

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	225
3msq_A	224	Putative ubiquinone biosynthesis protein; COQ4 sup	100.0
3kb4_A	225	ALR8543 protein; alpha-beta protein., structural g	100.0

>3msq_A Putative ubiquinone biosynthesis protein; COQ4 superfamily, structural genomics, joint center for STRU genomics, JCSG; 2.85A {Nostoc punctiforme}

Probab=100.00  E-value=5.9e-65  Score=436.38  Aligned_cols=207  Identities=20%  Similarity=0.311  Sum_probs=183.6

Q ss_pred             hHHHHHHHHHHHHHhhcCCCCchhhHHhhhc-cCchhHHHHHHHHhCCHHHHHHHhcCCCCCcccchhhccCCCCChHHH
Q 046453           11 GWQQVAVAVGSAVGALLDPRRADLIAALGET-TGRPAFESVLQRMKRSPEGRAVLLERPRVIYEKVGHAWDLPPNTFGAA   89 (225)
Q Consensus        11 ~~~~~~~~~~~~~~~l~dp~~~d~v~~l~e~-~~~~a~~~~~~~m~~~p~g~~ll~erp~~~~~~~d~l~~lP~gSLG~~   89 (225)
                      ..=+.++++++++.+++||+|+|+||+++|+ +|++++++++++|++||+|++||+|||++++.+++.|++||+||||++
T Consensus        12 ~~~~~l~~l~~~~~ll~dp~~~d~V~~l~e~l~g~~~l~~~~~~m~~~p~gr~iL~erp~~~~~dl~~L~~lP~gTlG~~   91 (224)
T 3msq_A           12 KGLLAYIQFLASSAQKIGDGNTDRVFDFEDALDQTQMAQLAVDELKKIPEVNALFSERWLPAPFNLDDLAKLPEGTLGHV   91 (224)
T ss_dssp             HHHHHHHHHHHHTTC----CHHHHHHHHHHHTTTSHHHHHHHHHHTTSHHHHHHHHHTCCCCCCCHHHHHTSCTTBHHHH
T ss_pred             HHHhHHHHHHHHHHHHcCCCchhHHHHHHHHcCChHHHHHHHHHHhcCHHHHHHHHhCCCCCCCCHHHHHcCCCCChHHH
Confidence            3445669999999999999999999999997 788999999999999999999999999988899999999999999999


Q ss_pred             HHHHhhcCCCCCCCCCCCccCCcchHHHHHhhhccccchhhhccCCCCCcchhHHHHHHHHhcccchHHHHHHHhhcc--
Q 046453           90 YASFMGSRNFSPDDRPPVRFMDTDELAYVAMRAREVHDFWHTLFGLPTNLIGESALKVIEFQQMYLPMCFLSVIGGSA--  167 (225)
Q Consensus        90 Y~~fl~~~g~~p~~~~~v~~~~~~~~~y~~~R~r~~HDi~HvLtG~~t~~~GEi~v~~F~~~q~~~p~~~l~~~~g~~--  167 (225)
                      |++||+++||+||++++|++  ++|.+||++|||+||||+|||||||||++||++||||+++|+++|++++++++|.+  
T Consensus        92 Y~~fl~~~g~spd~~~~v~~--~~d~ayv~~R~re~HD~~HvLtG~~t~~~GEi~v~~Fe~~q~~~P~~~l~~~~~~~~~  169 (224)
T 3msq_A           92 YAREMKARGFDPYFYKKVPV--VDDISYLKMLWRSTHDIYHVVAGFDTNVFGEIGLQAFFLAQTPIPISVMLLSFGMVMI  169 (224)
T ss_dssp             HHHHHHHC-----CCCCCCC--CSHHHHHHHHHHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCCCCccCCCCC--CcHHHHHHHHHhcchhhhhhccCCCCCchhHHHHHHHHHHccCCcHHHHHHHHHHHHH
Confidence            99999999999999999887  46899999999999999999999999999999999999999999999988766654  


Q ss_pred             -ccCHHHHHHHHHhHHHHHHHhcCCC-CcccCcchhhhhhccHHHHHHHcCCCCC
Q 046453          168 -RFSEKQRKLFFQHYFPWAIRAGMRS-TDLMCVYYEQHFHEDLEDLRKKWGIVPA  220 (225)
Q Consensus       168 -~~~~~~~~~l~~~~~~~a~~~G~~a-~~l~~~~wE~~~e~pL~e~R~~lgI~~~  220 (225)
                       +++|+++..++.. ++||+++|++| ++|++++||++||+||+|||++|||+|.
T Consensus       170 ~~~~p~~~~~l~~~-i~~a~~~G~~a~~~L~~v~wE~~~e~pl~e~R~eLgI~p~  223 (224)
T 3msq_A          170 SLYQPTNFKALMTE-ISRGYRVGSHTPGKLIAQKWDQLWDVQVSEIRERLGVNSI  223 (224)
T ss_dssp             HHHCGGGHHHHHHH-HHHHHHHHHTCCSCSTTCCGGGSTTSBHHHHHHHHTSCC-
T ss_pred             HhhCHHHHHHHHHH-HHHHHHHHHhCccchhcChHHHHhCCcHHHHHHHhCCCCC
Confidence             6788887777765 79999999999 9999999999999999999999999874

>3kb4_A ALR8543 protein; alpha-beta protein., structural genomics, PSI-2, protein STR initiative, northeast structural genomics consortium, NESG, function; HET: GR0; 2.41A {Nostoc SP}

Probab=100.00  E-value=1.8e-61  Score=414.42  Aligned_cols=200  Identities=20%  Similarity=0.317  Sum_probs=179.7

Q ss_pred             HHHHHHHHhhcC-CCCchhhHHhhhccCch-hHHHHHHHHhCCHHHHHHHhcCCCCCcccchhhccCCCCChHHHHHHHh
Q 046453           17 VAVGSAVGALLD-PRRADLIAALGETTGRP-AFESVLQRMKRSPEGRAVLLERPRVIYEKVGHAWDLPPNTFGAAYASFM   94 (225)
Q Consensus        17 ~~~~~~~~~l~d-p~~~d~v~~l~e~~~~~-a~~~~~~~m~~~p~g~~ll~erp~~~~~~~d~l~~lP~gSLG~~Y~~fl   94 (225)
                      +++.+++++++| |+|+++||+++|+++++ ++++++++|++||+||+||+|||++++.+++.|++||+||||++|++||
T Consensus        12 ~a~~~~~~l~~~~p~d~~~V~~l~eal~~~~~l~~~~~~m~~~P~Gr~iL~eRp~~~~~dl~~L~~lP~gTlG~~Y~~fl   91 (225)
T 3kb4_A           12 AILESFLELVKSPYGNFASIGKLSHVLNDPDTLQKVVAVLSLTPQGKQAFEDRPMLGKIDLEQLHQLPNYTLGYMYADHM   91 (225)
T ss_dssp             HHHHHHHHHHHSCSCCHHHHHHHHHHHSCHHHHHHHHHHHTTSHHHHHHHHHCCCCCSCCHHHHTTSCTTBHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCcHHHHHHHHHHcCChHHHHHHHHHHhcCHHHHHHHHhCCCCCCCCHHHHHcCCCCChHHHHHHHH
Confidence            678999999999 99999999999998875 8999999999999999999999999999999999999999999999999


Q ss_pred             hcCCCCCCCCCCCccCCcchHHHHHhhhccccchhhhccCCCCCcchhHHHHHHHHhcccchHHHHHHHhhccccCHHHH
Q 046453           95 GSRNFSPDDRPPVRFMDTDELAYVAMRAREVHDFWHTLFGLPTNLIGESALKVIEFQQMYLPMCFLSVIGGSARFSEKQR  174 (225)
Q Consensus        95 ~~~g~~p~~~~~v~~~~~~~~~y~~~R~r~~HDi~HvLtG~~t~~~GEi~v~~F~~~q~~~p~~~l~~~~g~~~~~~~~~  174 (225)
                      +++||+||++++   ++++|.+||++|||+||||+|||||||||++||++||+|+++|++.|+++++++++. .+++..+
T Consensus        92 ~~~g~~pd~~~~---~~d~~~aYv~~R~re~HD~~HvltG~~~~~~GEi~v~~f~~~q~~~~~~~~~~~~~~-l~~~~~~  167 (225)
T 3kb4_A           92 IRNQLTPPPVNE---NVNHPFMFLAAHLGETHDIWHVVTGCDTDKPGEVKLEAFYTAQLIPDRLFLALLAKN-LLKTAMY  167 (225)
T ss_dssp             HHTTCCC--------CCCSHHHHHHHHHHHSHHHHHHHHTCCSSHHHHHHHHHHHHHHSTTCSHHHHHHHHH-HHHHHHH
T ss_pred             HHcCCCCCcCCC---CCCcHHHHHHHHHhhhhhHHHHhhCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHH-hhChHHh
Confidence            999999999877   368899999999999999999999999999999999999999999999988887776 4566555


Q ss_pred             H-----HHHHhHHHHHHHhcCCCCcccCcchhhhhhccHHHHHHHcCCCCCC
Q 046453          175 K-----LFFQHYFPWAIRAGMRSTDLMCVYYEQHFHEDLEDLRKKWGIVPAP  221 (225)
Q Consensus       175 ~-----~l~~~~~~~a~~~G~~a~~l~~~~wE~~~e~pL~e~R~~lgI~~~~  221 (225)
                      .     .++.. ++||+++|++|++|++++||++||+||+|||++|||++.-
T Consensus       168 ~~~~~~~~~~~-i~~~~~~G~~a~~L~~v~wEe~~e~pL~elR~eLgI~~~~  218 (225)
T 3kb4_A          168 EVELCEQILDG-LTQGWMMGKRAKPLFGIEWNKLWETPLEELQTSLNIVPIL  218 (225)
T ss_dssp             CGGGHHHHHHH-HHHHHHHHHHSCCCTTCCGGGCTTSBHHHHHHHTTCCC--
T ss_pred             hhhhHHHHHHH-HHHHHHhhhcCchhhhchHHHHhcCCHHHHHHHhCChHHH
Confidence            4     44554 6899999999999999999999999999999999999753

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00