Citrus Sinensis ID: 046479

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------23
Protein Sequence
MGRGKMVLERIQNKINRQATFAKRRDGLLKKAYELSLLCDAEVALIIFSSHGMLFEFGSNFGMAKILERYRQYCYTSQEPIDINQLEPEALFREILRLRALRESLERSQRHFLGEDLGTLGVKELQKLEKQLDKTLSLSRQRKTDLMRQHLETLQKKAHDLEEENKQLKFKLEEAIRASGADPNIAVITNHLRVHPAQQMGYNAHDRANIGAASDFVSGAISPAQGWL
Secondary Structure (PSIPRED)
ccccccHHHHccccccccccccccccccHHHHHHHHHHccccEEEEEEccccccccccccccHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccEEEEEEEcccccEEEEEcccHHHHHHHHHHHHcccccccccccHHHHHcHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
MGRGKMVLERIQNKINRQATFAKRRDGLLKKAYELSLLCDAEVALIIFSSHgmlfefgsnfGMAKILERYRQycytsqepidinqlePEALFREILRLRALRESLERSQRHflgedlgtlGVKELQKLEKQLDKTLSLSRQRKTDLMRQHLETLQKKAHDLEEENKQLKFKLEEAIrasgadpniaVITNHlrvhpaqqmgynahdranigaasdfvsgaispaqgwl
Flexible Loop (DISEMBL)
MGRGKMVLERIQNkinrqatfakrrDGLLKKAYELSLLCDAEVALIIFSSHGMLFEFGSNFGMAKILERYRQYCYTSQepidinqlePEALFREILRLRALRESLERsqrhflgedlgtlgvKELQKLEKQLdktlslsrqrktDLMRQHLETLQKKAHDLEEENKQLKFKLEEAIRASGADPNIAVITNHLRVHPAQQMGYNAHDRANIGAASDFVSGAISPAQGWL
Low Complexity Region (SEG)
MGRGKMVLERIQNKINRQATFAKRRDGLLKKAYELSLLCDAEVALIIFSSHGMLFEFGSNFGMAKILERYRQYCYTSQEPIDINQLEPealfreilrlralreslersQRHFLGEDLGTLGVkelqklekqlDKTLSLSRQRKTDLMRQHLETLQKKAHDLEEENKQLKFKLEEAIRASGADPNIAVITNHLRVHPAQQMGYNAHDRANIGAASDFVSGAISPAQGWL
Disordered region (IsUnstruct)
**************INRQATFAKRRDGLLKKAYELSLLCDAEVALIIFSSHGMLFEFGSNFGMAKILERYRQYCYTSQEPIDINQLEPEALFREILRLRALRESL****RHFLGEDLGTLGV***********************************************************DPNIAVITNHLRVHPAQQMGYNAHDRANIGA****************
Disordered Region (DISOPRED)
MGRGKMVLERIQNKINRQATFAKRRDGLLKKAYELSLLCDAEVALIIFSSHGMLFEFGSNFGMAKILERYRQ*******************FREILRLRALRESLERSQRHFLGEDLGTLGVKELQKLEKQLDKTLSLSRQRKTDLMRQHLETLQKKAHDLEEENKQLKF******************************************************QGWL
Disordered Region (DISEMBL)
MGRGKMVLERIQNKINRQATFAKRRDGLLKKAYELSLLCDAEVALIIFSSHGMLFEFGSNFGMAKILERYRQYCYTSQEPIDINQLEPEALFREILRLRALRESLERSQRHFLGEDLGTLGVKELQKLEKQLDKTLSLSRQRKTDLMRQHLETLQKKAHDLEEENKQLKFKLEEAIRASGADPNIAVITNHLRVHPAQQMGYNAHDRANIGAASDFVSGAISPAQGWL
Disordered Region (DISPRO)
*****MVLERIQNKINRQATFAKRRDGLLKKAYELSLLCDAEVALIIFSSHGMLFEFGSNFGMAKILERYRQYCYTSQEPIDINQLEPEALFREILRLRALRESLERSQRHFLGEDLGTLGVKELQKLEKQLDKTLSLSRQRKTDLMRQHLETLQKKAHDLEEENKQLKFKLEEAIRAS***********************NAHDRANIGA****************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGRGKMVLERIQNKINRQATFAKRRDGLLKKAYELSLLCDAEVALIIFSSHGMLFEFGSNFGMAKILERYRQYCYTSQEPIDINQLEPEALFREILRLRALRESLERSQRHFLGEDLGTLGVKELQKLEKQLDKTLSLSRQRKxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxSGADPNIAVITNHLRVHPAQQMGYNAHDRANIGAASDFVSGAISPAQGWL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	228	2.2.26 [Sep-21-2011]
Q6EU39	250	MADS-box transcription fa	yes	no	0.745	0.68	0.609	3e-50
Q7XUN2	249	MADS-box transcription fa	no	no	0.789	0.722	0.565	3e-48
P29386	252	Agamous-like MADS-box pro	yes	no	0.960	0.869	0.426	5e-47
Q39685	233	MADS-box protein CMB1 OS=	N/A	no	0.956	0.935	0.479	6e-46
Q03489	241	Agamous-like MADS-box pro	N/A	no	0.956	0.904	0.452	3e-44
P29384	250	Developmental protein SEP	no	no	0.890	0.812	0.472	2e-43
Q40170	227	Agamous-like MADS-box pro	N/A	no	0.763	0.766	0.5	3e-43
Q9SAR1	248	MADS-box transcription fa	no	no	0.789	0.725	0.532	5e-43
P29382	251	Developmental protein SEP	no	no	0.771	0.701	0.545	7e-43
Q42429	250	Agamous-like MADS-box pro	N/A	no	0.763	0.696	0.488	1e-42

>sp|Q6EU39|MADS6_ORYSJ MADS-box transcription factor 6 OS=Oryza sativa subsp. japonica GN=MADS6 PE=1 SV=1

 Score =  198 bits (503), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 106/174 (60%), Positives = 135/174 (77%), Gaps = 4/174 (2%)

Query: 1   MGRGKMVLERIQNKINRQATFAKRRDGLLKKAYELSLLCDAEVALIIFSSHGMLFEFGSN 60
           MGRG++ L+RI+NKINRQ TF+KRR+GLLKKAYELS+LCDAEVALIIFSS G L+EFGS 
Sbjct: 1   MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGS- 59

Query: 61  FGMAKILERYRQYCYTSQEPIDINQL-EPEALFREILRLRALRESLERSQRHFLGEDLGT 119
            G+ K LERY+  CY +Q+    N L E ++ + E+ +L+A  E+L+R+QRH LGEDLG 
Sbjct: 60  AGITKTLERYQHCCYNAQD--SNNALSETQSWYHEMSKLKAKFEALQRTQRHLLGEDLGP 117

Query: 120 LGVKELQKLEKQLDKTLSLSRQRKTDLMRQHLETLQKKAHDLEEENKQLKFKLE 173
           L VKELQ+LEKQL+  LS +RQRKT LM + +E L++K   L E N+QLK KLE
Sbjct: 118 LSVKELQQLEKQLECALSQARQRKTQLMMEQVEELRRKERQLGEINRQLKHKLE 171

Probable transcription factor. Regulates floral organ identity and floral meristem determinacy. May be involved in the control of flowering time.
Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q7XUN2|MAD17_ORYSJ MADS-box transcription factor 17 OS=Oryza sativa subsp. japonica GN=MADS17 PE=1 SV=2

 Score =  191 bits (485), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 103/182 (56%), Positives = 134/182 (73%), Gaps = 2/182 (1%)

Query: 1   MGRGKMVLERIQNKINRQATFAKRRDGLLKKAYELSLLCDAEVALIIFSSHGMLFEFGSN 60
           MGRG++ L+RI+NKINRQ TF+KRR+GLLKKAYELS+LCDAEVALIIFSS G L+EFGS 
Sbjct: 1   MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGS- 59

Query: 61  FGMAKILERYRQYCYTSQEPID-INQLEPEALFREILRLRALRESLERSQRHFLGEDLGT 119
            G+ K LE+Y   CY +Q     +   E ++ ++E+ RL+   E L+RSQRH LGEDLG 
Sbjct: 60  AGINKTLEKYNSCCYNAQGSNSALAGGEHQSWYQEMSRLKTKLECLQRSQRHMLGEDLGP 119

Query: 120 LGVKELQKLEKQLDKTLSLSRQRKTDLMRQHLETLQKKAHDLEEENKQLKFKLEEAIRAS 179
           L +KELQ+LEKQL+ +LS +RQRKT +M + ++ L++K   L E NKQLK KLE    +S
Sbjct: 120 LSIKELQQLEKQLEYSLSQARQRKTQIMMEQVDDLRRKERQLGELNKQLKNKLEAEADSS 179

Query: 180 GA 181
             
Sbjct: 180 NC 181

Probable transcription factor. Plays minor but redundant roles with MADS6 in floral development.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|P29386|AGL6_ARATH Agamous-like MADS-box protein AGL6 OS=Arabidopsis thaliana GN=AGL6 PE=1 SV=2

 Score =  187 bits (475), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 108/253 (42%), Positives = 152/253 (60%), Gaps = 34/253 (13%)

Query: 1   MGRGKMVLERIQNKINRQATFAKRRDGLLKKAYELSLLCDAEVALIIFSSHGMLFEFGSN 60
           MGRG++ ++RI+NKINRQ TF+KRR+GLLKKAYELS+LCDAEVALIIFSS G L+EFGS 
Sbjct: 1   MGRGRVEMKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGS- 59

Query: 61  FGMAKILERYRQYCYTSQEPIDINQLEPEALFREILRLRALRESLERSQRHFLGEDLGTL 120
            G+   +ERY + CY      +  +   ++  +E+ +L++  ESL R+ R+ LGEDLG +
Sbjct: 60  VGIESTIERYNR-CYNCSLSNNKPEETTQSWCQEVTKLKSKYESLVRTNRNLLGEDLGEM 118

Query: 121 GVKELQKLEKQLDKTLSLSRQRKTDLMRQHLETLQKKAHDLEEENKQLKFKLE------- 173
           GVKELQ LE+QL+  L+ +RQRKT +M + +E L+KK   L + NKQLK K E       
Sbjct: 119 GVKELQALERQLEAALTATRQRKTQVMMEEMEDLRKKERQLGDINKQLKIKFETEGHAFK 178

Query: 174 -------EAIRASGADPN---IAVITNHLRV-----HPAQQMGYNAH----------DRA 208
                   +  +   DPN     V  +H  V      P  Q+G+  H           ++
Sbjct: 179 TFQDLWANSAASVAGDPNNSEFPVEPSHPNVLDCNTEPFLQIGFQQHYYVQGEGSSVSKS 238

Query: 209 NIGAASDFVSGAI 221
           N+   ++FV G +
Sbjct: 239 NVAGETNFVQGWV 251

Probable transcription factor. Forms an heterodimer via the K-box domain with AG, that could be involved in genes regulation during floral meristem development.

Arabidopsis thaliana (taxid: 3702)

>sp|Q39685|CMB1_DIACA MADS-box protein CMB1 OS=Dianthus caryophyllus GN=CMB1 PE=2 SV=1

 Score =  184 bits (466), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 116/242 (47%), Positives = 150/242 (61%), Gaps = 24/242 (9%)

Query: 1   MGRGKMVLERIQNKINRQATFAKRRDGLLKKAYELSLLCDAEVALIIFSSHGMLFEFGSN 60
           MGRG++ L+RI+NKINRQ TFAKRR+GLLKKAYELS+LCDAEVALI+FS+ G L+EF S 
Sbjct: 1   MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIVFSNRGKLYEFCST 60

Query: 61  FGMAKILERYRQYCYTSQEPIDINQLEPEALFREILRLRALRESLERSQRHFLGEDLGTL 120
             M K LERY++  Y S E    ++ E E+ ++E L+L+A  + L+RS R+ LGEDLG L
Sbjct: 61  SCMNKTLERYQRCSYGSLETSQPSK-ETESSYQEYLKLKAKVDVLQRSHRNLLGEDLGEL 119

Query: 121 GVKELQKLEKQLDKTLSLSRQRKTDLMRQHLETLQKKAHDLEEENKQLKFKLEEA----- 175
             KEL++LE QLDK+L   R  KT  M   L  LQKK   L E N+ LK KLEE+     
Sbjct: 120 STKELEQLEHQLDKSLRQIRSIKTQHMLDQLADLQKKEEMLFESNRALKTKLEESCASFR 179

Query: 176 ----IRASGA---DPNIAVITNHLRVHPAQQMGYN--AHDRANIGAASDFVSGAISPAQG 226
               +R  G    +P      N+L      Q+GYN    D+ N   ++  V G    AQG
Sbjct: 180 PNWDVRQPGDGFFEPLPLPCNNNL------QIGYNEATQDQMNATTSAQNVHGF---AQG 230

Query: 227 WL 228
           W+
Sbjct: 231 WM 232

Dianthus caryophyllus (taxid: 3570)

>sp|Q03489|AGL9_PETHY Agamous-like MADS-box protein AGL9 homolog OS=Petunia hybrida GN=FBP2 PE=1 SV=2

 Score =  178 bits (451), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 113/250 (45%), Positives = 150/250 (60%), Gaps = 32/250 (12%)

Query: 1   MGRGKMVLERIQNKINRQATFAKRRDGLLKKAYELSLLCDAEVALIIFSSHGMLFEFGSN 60
           MGRG++ L+RI+NKINRQ TFAKRR+GLLKKAYELS+LCDAEVALIIFS+ G L+EF S+
Sbjct: 1   MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60

Query: 61  FGMAKILERYRQYCYTSQEPIDINQLEPEALF--REILRLRALRESLERSQRHFLGEDLG 118
             M K LERY++  Y + E  +I+  E   +   +E L+L+A  E+L+RSQR+ LGEDLG
Sbjct: 61  SSMLKTLERYQKCNYGAPE-TNISTREALEISSQQEYLKLKARYEALQRSQRNLLGEDLG 119

Query: 119 TLGVKELQKLEKQLDKTLSLSRQRKTDLMRQHLETLQKKAHDLEEENKQLKFKLEEAIRA 178
            L  KEL+ LE+QLD +L   R  +T LM   L+ LQ+K H L E N+ LK +L E    
Sbjct: 120 PLNSKELESLERQLDMSLKQIRSTRTQLMLDQLQDLQRKEHALNEANRTLKQRLME---- 175

Query: 179 SGADPNIAVITN--------------------HLRVHPAQQMGYNAHDRANIGAASDFVS 218
            G+  N+    N                     L   P  Q+GY  +D   +G A   V+
Sbjct: 176 -GSTLNLQWQQNAQDVGYGRQATQTQGDGFFHPLECEPTLQIGYQ-NDPITVGGAGPSVN 233

Query: 219 GAISPAQGWL 228
             ++   GWL
Sbjct: 234 NYMA---GWL 240

Probable transcription factor.

Petunia hybrida (taxid: 4102)

>sp|P29384|SEP2_ARATH Developmental protein SEPALLATA 2 OS=Arabidopsis thaliana GN=SEP2 PE=1 SV=1

 Score =  175 bits (444), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 105/222 (47%), Positives = 134/222 (60%), Gaps = 19/222 (8%)

Query: 1   MGRGKMVLERIQNKINRQATFAKRRDGLLKKAYELSLLCDAEVALIIFSSHGMLFEFGSN 60
           MGRG++ L+RI+NKINRQ TFAKRR+GLLKKAYELS+LCDAEV+LI+FS+ G L+EF S 
Sbjct: 1   MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVSLIVFSNRGKLYEFCST 60

Query: 61  FGMAKILERYRQYCYTSQEPIDINQLEPEALFREILRLRALRESLERSQRHFLGEDLGTL 120
             M K LERY++  Y S E  +    E E  +RE L+L+   E+L+R QR+ LGEDLG L
Sbjct: 61  SNMLKTLERYQKCSYGSIEVNNKPAKELENSYREYLKLKGRYENLQRQQRNLLGEDLGPL 120

Query: 121 GVKELQKLEKQLDKTLSLSRQRKTDLMRQHLETLQKKAHDLEEENKQLKFKLEEAIRA-- 178
             KEL++LE+QLD +L   R  KT  M   L  LQ K H L + N+ L  KLE+ I    
Sbjct: 121 NSKELEQLERQLDGSLKQVRCIKTQYMLDQLSDLQGKEHILLDANRALSMKLEDMIGVRH 180

Query: 179 --------SGADPNIAV---------ITNHLRVHPAQQMGYN 203
                    G   NIA          +   L   P  Q+GY+
Sbjct: 181 HHIGGGWEGGDQQNIAYGHPQAHSQGLYQSLECDPTLQIGYS 222

Probable transcription factor. Functions with SEPALLATA1/AGL2 and SEPALLATA3/AGL9 to ensure proper development of petals, stamens and carpels and to prevent the indeterminate growth of the flower meristem. Forms an heterodimer via the K-box domain with AG, that could be involved in genes regulation during floral meristem development.

Arabidopsis thaliana (taxid: 3702)

>sp|Q40170|AGL8_SOLLC Agamous-like MADS-box protein AGL8 homolog OS=Solanum lycopersicum GN=TDR4 PE=2 SV=1

 Score =  174 bits (442), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 87/174 (50%), Positives = 123/174 (70%)

Query: 1   MGRGKMVLERIQNKINRQATFAKRRDGLLKKAYELSLLCDAEVALIIFSSHGMLFEFGSN 60
           MGRG++ L+RI+NKINRQ TF+KRR GLLKKA+E+S+LCDAEV LI+FS+ G LFE+ ++
Sbjct: 1   MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVGLIVFSTKGKLFEYAND 60

Query: 61  FGMAKILERYRQYCYTSQEPIDINQLEPEALFREILRLRALRESLERSQRHFLGEDLGTL 120
             M +ILERY +Y +  ++ +  +   P +   E  +L+A  E L+R+Q+H++GEDL +L
Sbjct: 61  SCMERILERYERYSFAEKQLVPTDHTSPVSWTLEHRKLKARLEVLQRNQKHYVGEDLESL 120

Query: 121 GVKELQKLEKQLDKTLSLSRQRKTDLMRQHLETLQKKAHDLEEENKQLKFKLEE 174
            +KELQ LE QLD  L   R RK  LM + +  LQKK   L+E+N QL  K++E
Sbjct: 121 SMKELQNLEHQLDSALKHIRSRKNQLMHESISVLQKKDRALQEQNNQLSKKVKE 174

Probable transcription factor.

Solanum lycopersicum (taxid: 4081)

>sp|Q9SAR1|MADS8_ORYSJ MADS-box transcription factor 8 OS=Oryza sativa subsp. japonica GN=MADS8 PE=1 SV=1

 Score =  174 bits (441), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 97/182 (53%), Positives = 129/182 (70%), Gaps = 2/182 (1%)

Query: 1   MGRGKMVLERIQNKINRQATFAKRRDGLLKKAYELSLLCDAEVALIIFSSHGMLFEFGSN 60
           MGRG++ L+RI+NKINRQ TFAKRR+GLLKKAYELS+LCDAEVALIIFS+ G L+EF S 
Sbjct: 1   MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSG 60

Query: 61  FGMAKILERYRQYCYTSQEPIDINQLEP--EALFREILRLRALRESLERSQRHFLGEDLG 118
             M + LERY+++ Y   +    N+     ++   E L+L+A  E+L+R+QR+ LGEDLG
Sbjct: 61  QSMTRTLERYQKFSYGGPDTAIQNKENELVQSSRNEYLKLKARVENLQRTQRNLLGEDLG 120

Query: 119 TLGVKELQKLEKQLDKTLSLSRQRKTDLMRQHLETLQKKAHDLEEENKQLKFKLEEAIRA 178
           TLG+KEL++LEKQLD +L   R  +T  M   L  LQ++   L E NK L+ KLEE+ + 
Sbjct: 121 TLGIKELEQLEKQLDSSLRHIRSTRTQHMLDQLTDLQRREQMLCEANKCLRRKLEESNQL 180

Query: 179 SG 180
            G
Sbjct: 181 HG 182

Probable transcription factor. May be involved in the control of flowering time.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|P29382|SEP1_ARATH Developmental protein SEPALLATA 1 OS=Arabidopsis thaliana GN=SEP1 PE=1 SV=2

 Score =  174 bits (440), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 96/176 (54%), Positives = 122/176 (69%)

Query: 1   MGRGKMVLERIQNKINRQATFAKRRDGLLKKAYELSLLCDAEVALIIFSSHGMLFEFGSN 60
           MGRG++ L+RI+NKINRQ TFAKRR+GLLKKAYELS+LCDAEVALIIFS+ G L+EF S+
Sbjct: 1   MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60

Query: 61  FGMAKILERYRQYCYTSQEPIDINQLEPEALFREILRLRALRESLERSQRHFLGEDLGTL 120
             M K L+RY++  Y S E  +    E E  +RE L+L+   E+L+R QR+ LGEDLG L
Sbjct: 61  SNMLKTLDRYQKCSYGSIEVNNKPAKELENSYREYLKLKGRYENLQRQQRNLLGEDLGPL 120

Query: 121 GVKELQKLEKQLDKTLSLSRQRKTDLMRQHLETLQKKAHDLEEENKQLKFKLEEAI 176
             KEL++LE+QLD +L   R  KT  M   L  LQ K   L E N+ L  KL++ I
Sbjct: 121 NSKELEQLERQLDGSLKQVRSIKTQYMLDQLSDLQNKEQMLLETNRALAMKLDDMI 176

Probable transcription factor. Functions with SEPALLATA2/AGL4 and SEPALLATA3/AGL9 to ensure proper development of petals, stamens and carpels, and to prevent the indeterminate growth of the flower meristem. Forms an heterodimer via the K-box domain with AGAMOUS, that could be involved in genes regulation during floral meristem development.

Arabidopsis thaliana (taxid: 3702)

>sp|Q42429|AGL8_SOLTU Agamous-like MADS-box protein AGL8 homolog OS=Solanum tuberosum PE=2 SV=1

 Score =  172 bits (437), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 85/174 (48%), Positives = 123/174 (70%)

Query: 1   MGRGKMVLERIQNKINRQATFAKRRDGLLKKAYELSLLCDAEVALIIFSSHGMLFEFGSN 60
           MGRG++ L+RI+NKINRQ TF+KRR GLLKKA+E+S+LCDAEV LI+FS+ G LFE+ ++
Sbjct: 1   MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVGLIVFSTKGKLFEYAND 60

Query: 61  FGMAKILERYRQYCYTSQEPIDINQLEPEALFREILRLRALRESLERSQRHFLGEDLGTL 120
             M ++LERY +Y +  ++ +  +   P +   E  +L+A  E L+R+Q+H++GEDL +L
Sbjct: 61  SCMERLLERYERYSFAERQLVPTDHTSPGSWTLEHAKLKARLEVLQRNQKHYVGEDLESL 120

Query: 121 GVKELQKLEKQLDKTLSLSRQRKTDLMRQHLETLQKKAHDLEEENKQLKFKLEE 174
            +KELQ LE QLD  L   R RK  LM + +  LQK+   L+E+N QL  K++E
Sbjct: 121 NMKELQNLEHQLDSALKHIRSRKNQLMHESISVLQKQDRALQEQNNQLSKKVKE 174

Probable transcription factor.

Solanum tuberosum (taxid: 4113)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	228
225453839	244	PREDICTED: MADS-box protein 3 [Vitis vin	0.978	0.913	0.504	7e-54
399950153	242	AGL6-like protein 1 [Iris fulva]	0.960	0.904	0.522	1e-53
212525794	243	MADS-13 [Gossypium hirsutum]	0.960	0.901	0.486	1e-52
34979582	241	MADS box protein [Asparagus officinalis]	0.912	0.863	0.548	1e-52
160713959	241	MADS box protein [Narcissus tazetta var.	0.912	0.863	0.539	1e-52
117553504	241	MADS-box transcription factor AGL6a [Cro	0.916	0.867	0.546	2e-52
117553506	241	MADS-box transcription factor AGL6b [Cro	0.912	0.863	0.548	2e-52
224122500	185	predicted protein [Populus trichocarpa]	0.745	0.918	0.656	3e-52
399950145	251	AGL6-like protein 3 [Iris fulva]	0.964	0.876	0.501	3e-52
397529500	241	MADS-box transcription factor [Alstroeme	0.960	0.908	0.495	3e-52

>gi|225453839|ref|XP_002277624.1| PREDICTED: MADS-box protein 3 [Vitis vinifera] gi|20385586|gb|AAM21343.1|AF373602_1 MADS-box protein 3 [Vitis vinifera] gi|296089120|emb|CBI38823.3| unnamed protein product [Vitis vinifera]

 Score =  216 bits (549), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 125/248 (50%), Positives = 167/248 (67%), Gaps = 25/248 (10%)

Query: 1   MGRGKMVLERIQNKINRQATFAKRRDGLLKKAYELSLLCDAEVALIIFSSHGMLFEFGSN 60
           MGRG++ L+RI+NKINRQ TF+KRR+GLLKKAYELS+LCDAEVALIIFSS G L+EFGS 
Sbjct: 1   MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGS- 59

Query: 61  FGMAKILERYRQYCYTSQEPIDIN-QLEPEALFREILRLRALRESLERSQRHFLGEDLGT 119
            G  K LERY++ CYT   P D N + E ++ ++E+ +L+A  ESL+R+QRH LGEDLG 
Sbjct: 60  AGTTKTLERYQRVCYT---PQDNNMECETQSWYQEVSKLKAKYESLQRTQRHLLGEDLGP 116

Query: 120 LGVKELQKLEKQLDKTLSLSRQRKTDLMRQHLETLQKKAHDLEEENKQLKFKLE------ 173
           L VKELQ LEKQL+  L+ +RQRKT +M + +E L++K   L + NKQLK KLE      
Sbjct: 117 LSVKELQNLEKQLEGALAQARQRKTQMMIEQMEDLRRKERQLGDLNKQLKLKLEAEGQSL 176

Query: 174 EAIRASGADPNIAVITN-HLRVHPAQ------------QMGYNAHDRANIGAASDFVSGA 220
           +AI+ S  +P+ A   N    VHP+Q            Q+GY+ +  A   + S  ++G 
Sbjct: 177 KAIQGS-WNPSTATAGNSSFPVHPSQSNPMDCEPEPILQIGYHHYVPAEGPSVSKSMAGE 235

Query: 221 ISPAQGWL 228
            +  QGW+
Sbjct: 236 SNFIQGWV 243

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|399950153|gb|AFP65761.1| AGL6-like protein 1 [Iris fulva]

 Score =  215 bits (548), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 127/243 (52%), Positives = 162/243 (66%), Gaps = 24/243 (9%)

Query: 1   MGRGKMVLERIQNKINRQATFAKRRDGLLKKAYELSLLCDAEVALIIFSSHGMLFEFGSN 60
           MGRG++ L+RI+NKINRQ TF+KRR+GLLKKAYELS+LCDAEVALIIFSS G L+EFGS+
Sbjct: 1   MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSS 60

Query: 61  FGMAKILERYRQYCYTSQEPIDINQLEPEALFREILRLRALRESLERSQRHFLGEDLGTL 120
            G +K LERY++ CYTSQ+   I   E ++ ++E+ +L+A  ESL+RSQRH LGEDLG L
Sbjct: 61  -GTSKTLERYQRCCYTSQD-TTIADRETQSWYQEVSKLKAKFESLQRSQRHLLGEDLGPL 118

Query: 121 GVKELQKLEKQLDKTLSLSRQRKTDLMRQHLETLQKKAHDLEEENKQLKFKLEE---AIR 177
            VKELQ+LE+QL+  LS +R+RKT +M   +E L+KK   L E NKQLK KLEE   A R
Sbjct: 119 NVKELQQLERQLESALSQARKRKTQIMLDQMEELRKKERYLGEINKQLKNKLEEEGSAFR 178

Query: 178 A--SGADPNIAVITNHLRVHPAQ-----------QMGYN------AHDRANIGAASDFVS 218
                 + N  V TN   +HP Q           Q+GY       A  + N GA + F  
Sbjct: 179 TMQGSWESNGVVGTNPFSIHPPQSCNAMDCEPTLQIGYQHLVQPEAALQRNHGAENSFTL 238

Query: 219 GAI 221
           G +
Sbjct: 239 GWV 241

Source: Iris fulva

Species: Iris fulva

Genus: Iris

Family: Iridaceae

Order: Asparagales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|212525794|gb|ACJ26768.1| MADS-13 [Gossypium hirsutum]

 Score =  212 bits (539), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 122/251 (48%), Positives = 168/251 (66%), Gaps = 32/251 (12%)

Query: 1   MGRGKMVLERIQNKINRQATFAKRRDGLLKKAYELSLLCDAEVALIIFSSHGMLFEFGSN 60
           MGRG++ L+RI+NKINRQ TF+KRR+GLLKKAYELS+LCDAEVALIIFSS G L+EFGS+
Sbjct: 1   MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSS 60

Query: 61  FGMAKILERYRQYCYTSQEPIDINQLEPEA--LFREILRLRALRESLERSQRHFLGEDLG 118
            GM+K LERY++ C+T Q+    N LE E    ++E+ +L+A  E+L+R+QRH LGEDLG
Sbjct: 61  -GMSKTLERYQRCCFTPQD----NSLERETQNWYQEVTKLKAKYEALQRTQRHLLGEDLG 115

Query: 119 TLGVKELQKLEKQLDKTLSLSRQRKTDLMRQHLETLQKKAHDLEEENKQLKFKLE----- 173
            L VKELQ LEKQL+  L+L+RQRKT +M + +E L+KK  +L + NKQLK KLE     
Sbjct: 116 PLNVKELQNLEKQLEGALALARQRKTQIMIEQMEDLRKKERELGDLNKQLKIKLEAEGQN 175

Query: 174 ----EAIRASGADPNIAVITNHLRVHPAQ------------QMGYNAHDRANIGAASDFV 217
               + + +SGA    A  T++  +HP+             Q+GY+   +A   +    +
Sbjct: 176 LKTIQGLWSSGA----AAETSNFPLHPSHPHPMDCDHEPVLQIGYHHFVQAEGSSVPKSM 231

Query: 218 SGAISPAQGWL 228
           +G  +   GW+
Sbjct: 232 AGETNFIHGWV 242

Source: Gossypium hirsutum

Species: Gossypium hirsutum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|34979582|gb|AAQ83835.1| MADS box protein [Asparagus officinalis]

 Score =  212 bits (539), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 119/217 (54%), Positives = 151/217 (69%), Gaps = 9/217 (4%)

Query: 1   MGRGKMVLERIQNKINRQATFAKRRDGLLKKAYELSLLCDAEVALIIFSSHGMLFEFGSN 60
           MGRG++ L+RI+NKINRQ TF+KRR+GLLKKAYELS+LCDAEVALIIFSS G L+EFGS 
Sbjct: 1   MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSA 60

Query: 61  FGMAKILERYRQYCYTSQEPIDINQLEPEALFREILRLRALRESLERSQRHFLGEDLGTL 120
            G +K LERY++ CYTSQ+   I   E ++ ++E+ +L+A  ESL+RSQRH LGEDLG L
Sbjct: 61  -GTSKTLERYQRCCYTSQDAA-IASHETQSWYQEVSKLKAKFESLQRSQRHLLGEDLGPL 118

Query: 121 GVKELQKLEKQLDKTLSLSRQRKTDLMRQHLETLQKKAHDLEEENKQLKFKLE------E 174
            VKELQ+LE+QL+  LS +RQRKT +M   +E L+KK   L E NKQLK KLE       
Sbjct: 119 SVKELQQLERQLESALSQARQRKTQIMLDQMEELRKKERHLGEINKQLKAKLEAEGASFR 178

Query: 175 AIRASGADPNIAVITNHLRVHPAQQMGYNAHDRANIG 211
           AI+ S  +    V  N   +HP+Q    +      IG
Sbjct: 179 AIQGS-WESEAGVGGNAFSMHPSQSSAMDCEPTLQIG 214

Source: Asparagus officinalis

Species: Asparagus officinalis

Genus: Asparagus

Family: Asparagaceae

Order: Asparagales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|160713959|gb|ABX47015.1| MADS box protein [Narcissus tazetta var. chinensis]

 Score =  211 bits (538), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 117/217 (53%), Positives = 152/217 (70%), Gaps = 9/217 (4%)

Query: 1   MGRGKMVLERIQNKINRQATFAKRRDGLLKKAYELSLLCDAEVALIIFSSHGMLFEFGSN 60
           MGRG++ L+RI+NKINRQ TF+KRR+GLLKKAYELS+LCDAEVALI+FSS G L+EFGS 
Sbjct: 1   MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEFGSA 60

Query: 61  FGMAKILERYRQYCYTSQEPIDINQLEPEALFREILRLRALRESLERSQRHFLGEDLGTL 120
            G +K LERY++ CYTSQ+   I   E +    E+ +L+A  ESL+RSQRH LGEDLG L
Sbjct: 61  -GTSKTLERYQRCCYTSQDAA-IADRETQNWCHEVSKLKAKFESLQRSQRHLLGEDLGPL 118

Query: 121 GVKELQKLEKQLDKTLSLSRQRKTDLMRQHLETLQKKAHDLEEENKQLKFKLEE------ 174
            +KELQ+LE+QL+ +LS +RQRKT +M   +E L++K   L E NKQLK KLE+      
Sbjct: 119 SIKELQQLERQLEASLSQARQRKTQIMLDQMEELRRKERHLGEINKQLKIKLEQEGANLR 178

Query: 175 AIRASGADPNIAVITNHLRVHPAQQMGYNAHDRANIG 211
           AI+ S  + + AV+ N   +HP Q    +      IG
Sbjct: 179 AIQGSW-ESDAAVVGNAYSMHPGQSSAMDCEPTLQIG 214

Source: Narcissus tazetta var. chinensis

Species: Narcissus tazetta

Genus: Narcissus

Family: Amaryllidaceae

Order: Asparagales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|117553504|gb|ABK35281.1| MADS-box transcription factor AGL6a [Crocus sativus]

 Score =  211 bits (537), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 118/216 (54%), Positives = 150/216 (69%), Gaps = 7/216 (3%)

Query: 1   MGRGKMVLERIQNKINRQATFAKRRDGLLKKAYELSLLCDAEVALIIFSSHGMLFEFGSN 60
           MGRG++ L+RI+NKINRQ TF+KRR+GLLKKAYELS+LCDAEVALIIFSS G L+EFGS 
Sbjct: 1   MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSA 60

Query: 61  FGMAKILERYRQYCYTSQEPIDINQLEPEALFREILRLRALRESLERSQRHFLGEDLGTL 120
            G  K LERY++ CYTSQ+   I   E ++ ++E+ +L+A  ESL+RSQRH LGEDLG L
Sbjct: 61  -GTPKTLERYQRCCYTSQDST-IADRETQSWYQEVSKLKAKFESLQRSQRHLLGEDLGPL 118

Query: 121 GVKELQKLEKQLDKTLSLSRQRKTDLMRQHLETLQKKAHDLEEENKQLKFKLE---EAIR 177
            VKELQ+LE+QL+  LS +RQRKT +M   +E L+KK   L E NKQLK KLE      R
Sbjct: 119 SVKELQQLERQLESALSQARQRKTQIMLDQMEELRKKERHLGEINKQLKNKLETEGSTFR 178

Query: 178 A--SGADPNIAVITNHLRVHPAQQMGYNAHDRANIG 211
           A     + +  V +N   +HP+Q    +      IG
Sbjct: 179 AFQGSWESDGVVGSNAFPIHPSQSSAMDCEPTLQIG 214

Source: Crocus sativus

Species: Crocus sativus

Genus: Crocus

Family: Iridaceae

Order: Asparagales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|117553506|gb|ABK35282.1| MADS-box transcription factor AGL6b [Crocus sativus]

 Score =  211 bits (536), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 119/217 (54%), Positives = 150/217 (69%), Gaps = 9/217 (4%)

Query: 1   MGRGKMVLERIQNKINRQATFAKRRDGLLKKAYELSLLCDAEVALIIFSSHGMLFEFGSN 60
           MGRG++ L+RI+NKINRQ TF+KRR+GLLKKAYELS+LCDAEVALIIFSS G L+EFGS 
Sbjct: 1   MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSA 60

Query: 61  FGMAKILERYRQYCYTSQEPIDINQLEPEALFREILRLRALRESLERSQRHFLGEDLGTL 120
            G  K LERY++ CYTSQ+   I   E ++ ++E+ +L+A  ESL+RSQRH LGEDLG L
Sbjct: 61  -GTPKTLERYQRCCYTSQDST-IADRETQSWYQEVSKLKAKFESLQRSQRHLLGEDLGPL 118

Query: 121 GVKELQKLEKQLDKTLSLSRQRKTDLMRQHLETLQKKAHDLEEENKQLKFKLE------E 174
            VKELQ+LE+QL+ +LS +RQRKT +M   +E L+KK   L E N QLK KLE       
Sbjct: 119 SVKELQQLERQLESSLSQARQRKTQIMLDQMEELRKKERHLGELNNQLKNKLETEGSTFR 178

Query: 175 AIRASGADPNIAVITNHLRVHPAQQMGYNAHDRANIG 211
           AI+ S  + N  V  N    HP+Q    +      IG
Sbjct: 179 AIQGS-WESNGGVGNNAFPFHPSQSSAMDCEPTLQIG 214

Source: Crocus sativus

Species: Crocus sativus

Genus: Crocus

Family: Iridaceae

Order: Asparagales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224122500|ref|XP_002318852.1| predicted protein [Populus trichocarpa] gi|222859525|gb|EEE97072.1| predicted protein [Populus trichocarpa]

 Score =  211 bits (536), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 113/172 (65%), Positives = 139/172 (80%), Gaps = 2/172 (1%)

Query: 1   MGRGKMVLERIQNKINRQATFAKRRDGLLKKAYELSLLCDAEVALIIFSSHGMLFEFGSN 60
           MGRGK+VLERI+NKI+RQ TF+KRR+GLLKKAYELSLLCDAEVALIIFSSHG LFEF S+
Sbjct: 1   MGRGKVVLERIENKISRQVTFSKRRNGLLKKAYELSLLCDAEVALIIFSSHGKLFEF-SS 59

Query: 61  FGMAKILERYRQYCYTSQEPIDINQLEPEALFREILRLRALRESLERSQRHFLGEDLGTL 120
             M  IL+RYRQ CY++Q+  +I +     L++E+ RLRA  E+L+RSQR+FLGEDL  L
Sbjct: 60  IDMNSILQRYRQCCYSTQDT-NIPEEGSHNLYQEVSRLRAKCETLQRSQRNFLGEDLEPL 118

Query: 121 GVKELQKLEKQLDKTLSLSRQRKTDLMRQHLETLQKKAHDLEEENKQLKFKL 172
             KEL+K+EKQLDKTLS +RQRKT L+   +E L+ K  +LEEENKQLK K+
Sbjct: 119 AFKELEKIEKQLDKTLSQARQRKTQLLFDKMEELRLKEQELEEENKQLKTKV 170

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|399950145|gb|AFP65757.1| AGL6-like protein 3 [Iris fulva]

 Score =  210 bits (535), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 126/251 (50%), Positives = 164/251 (65%), Gaps = 31/251 (12%)

Query: 1   MGRGKMVLERIQNKINRQATFAKRRDGLLKKAYELSLLCDAEVALIIFSSHGMLFEFGSN 60
           MGRG++ L+RI+NKINRQ TF+KRR+GLLKKAYELS+LCDAEVALIIFSS G L+EFGS 
Sbjct: 1   MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSA 60

Query: 61  FGMAKILERYRQYCYTSQEPIDINQ--------LEPEALFREILRLRALRESLERSQRHF 112
            G +K LERY++ CYTSQ+    ++           ++ ++E+ +L+A  ESL+RSQRH 
Sbjct: 61  -GTSKTLERYQRCCYTSQDAAIADRETQFSWFWYTMQSWYQEVSKLKAKFESLQRSQRHL 119

Query: 113 LGEDLGTLGVKELQKLEKQLDKTLSLSRQRKTDLMRQHLETLQKKAHDLEEENKQLKFKL 172
           LGEDLG L VKELQ+LE+QL+  LS +RQRKT +M   +E L+KK   L E NKQLK KL
Sbjct: 120 LGEDLGPLSVKELQQLERQLESALSQARQRKTQIMLDQMEELRKKERHLGEINKQLKNKL 179

Query: 173 E---EAIRA--SGADPNIAVITNHLRVHPAQ-----------QMGYN------AHDRANI 210
           E    A RA     + N  V TN   +HP+Q           Q+GY       A  + N 
Sbjct: 180 EAEGNAFRAIQGSWESNGVVGTNPFSMHPSQSSSAMDCEPTLQIGYQHLVQPEAALQRNQ 239

Query: 211 GAASDFVSGAI 221
           GA ++F+ G +
Sbjct: 240 GAENNFMLGWV 250

Source: Iris fulva

Species: Iris fulva

Genus: Iris

Family: Iridaceae

Order: Asparagales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|397529500|dbj|BAM34482.1| MADS-box transcription factor [Alstroemeria ligtu subsp. ligtu]

 Score =  210 bits (535), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 120/242 (49%), Positives = 163/242 (67%), Gaps = 23/242 (9%)

Query: 1   MGRGKMVLERIQNKINRQATFAKRRDGLLKKAYELSLLCDAEVALIIFSSHGMLFEFGSN 60
           MGRG++ L+RI+NKINRQ TF+KRR+G+LKKAYELS+LCDAEVALIIFSS G L+EFGS 
Sbjct: 1   MGRGRVELKRIENKINRQVTFSKRRNGILKKAYELSVLCDAEVALIIFSSRGKLYEFGS- 59

Query: 61  FGMAKILERYRQYCYTSQEPIDINQLEPEALFREILRLRALRESLERSQRHFLGEDLGTL 120
            G +K LERY++ CYTSQ+   I++ E +  ++E+ +L+A  ESL+R+QRH LGEDLG L
Sbjct: 60  AGTSKTLERYQRCCYTSQDTNAIDR-ETQNWYQEMSKLKAKFESLQRAQRHLLGEDLGPL 118

Query: 121 GVKELQKLEKQLDKTLSLSRQRKTDLMRQHLETLQKKAHDLEEENKQLKFKLE------- 173
            VKELQ+LE+QL+  L+ +RQRKT LM   +E L+KK   L E NKQLK KLE       
Sbjct: 119 SVKELQQLERQLESALAQARQRKTQLMLDQMEELRKKERHLGEINKQLKNKLEAEGANLR 178

Query: 174 --------EAIRASGADPNIAVITNHLRVHPAQQMGY------NAHDRANIGAASDFVSG 219
                   EA+    A P   + ++ +   P  Q+GY      +A+ + N G  ++F+ G
Sbjct: 179 ALQGSWESEAVAGGNAFPMHQIQSSAMDTEPTLQIGYHPFIPQDANLQRNNGGENNFMLG 238

Query: 220 AI 221
            +
Sbjct: 239 WV 240

Source: Alstroemeria ligtu subsp. ligtu

Species: Alstroemeria ligtu

Genus: Alstroemeria

Family: Alstroemeriaceae

Order: Liliales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	228
UNIPROTKB|Q6EU39	250	MADS6 "MADS-box transcription	0.745	0.68	0.522	1.9e-37
UNIPROTKB|Q6EUV6	247	grcd3 "MADS domain protein" [G	0.785	0.724	0.456	2.4e-35
UNIPROTKB|D2T2F9	252	grcd5 "GRCD5 protein" [Gerbera	0.763	0.690	0.465	3.1e-35
UNIPROTKB|Q7XUN2	249	MADS17 "MADS-box transcription	0.754	0.690	0.494	3.1e-35
UNIPROTKB|Q6EUV7	247	grcd2 "MADS domain protein" [G	0.837	0.773	0.450	1e-34
UNIPROTKB|Q9ATF1	245	FBP9 "MADS-box transcription f	0.763	0.710	0.485	3.6e-34
TAIR|locus:2043600	252	AGL6 "AT2G45650" [Arabidopsis	0.741	0.670	0.468	1.2e-33
UNIPROTKB|Q03489	241	FBP2 "Agamous-like MADS-box pr	0.982	0.929	0.401	6.7e-33
UNIPROTKB|O65874	247	MTF1 "MADS-box transcription f	0.864	0.797	0.384	6.9e-32
TAIR|locus:2032372	251	SEP3 "SEPALLATA3" [Arabidopsis	0.868	0.788	0.416	1.3e-31

UNIPROTKB|Q6EU39 MADS6 "MADS-box transcription factor 6" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 402 (146.6 bits), Expect = 1.9e-37, P = 1.9e-37
 Identities = 91/174 (52%), Positives = 110/174 (63%)

Query:     1 MGRGKMVLERIQNKINRQATFAKRRDGLLKKAYELSLLCDAEVALIIFSSHGMLFEFGSN 60
             MGRG++ L+RI+NKINRQ TF+KRR+GLLKKAYELS+LCDAEVALIIFSS G L+EFGS 
Sbjct:     1 MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSA 60

Query:    61 FGMAKILERYRQYCYTSQEPIDINQL-EPXXXXXXXXXXXXXXXXXXXXQRHFLGEDLGT 119
              G+ K LERY+  CY +Q+    N L E                     QRH LGEDLG 
Sbjct:    61 -GITKTLERYQHCCYNAQD--SNNALSETQSWYHEMSKLKAKFEALQRTQRHLLGEDLGP 117

Query:   120 LGVXXXXXXXXXXDKTLSLSRQRKTDLMRQHLETLQKKAHDLEEENKQLKFKLE 173
             L V          +  LS +RQRKT LM + +E L++K   L E N+QLK KLE
Sbjct:   118 LSVKELQQLEKQLECALSQARQRKTQLMMEQVEELRRKERQLGEINRQLKHKLE 171

GO:0005515 "protein binding" evidence=IPI

GO:0010022 "meristem determinacy" evidence=IMP

GO:0010093 "specification of floral organ identity" evidence=IMP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

UNIPROTKB|Q6EUV6 grcd3 "MADS domain protein" [Gerbera hybrid cultivar (taxid:18101)]

 Score = 382 (139.5 bits), Expect = 2.4e-35, P = 2.4e-35
 Identities = 83/182 (45%), Positives = 111/182 (60%)

Query:     1 MGRGKMVLERIQNKINRQATFAKRRDGLLKKAYELSLLCDAEVALIIFSSHGMLFEFGSN 60
             MGRG++ L+RI+NKINRQ TF+KRR+GLLKKAYELS+LCDAEV LIIFSS   L+EFGS 
Sbjct:     1 MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVGLIIFSSRDKLYEFGS- 59

Query:    61 FGMAKILERYRQYCYTSQEPIDINQLEPXXXXXXXXXXXXXXXXXXXXQRHFLGEDLGTL 120
              G+ K LERY++ C+  Q+  + N+ E                     QRH LGEDLG L
Sbjct:    60 VGVMKTLERYQRCCFNPQD--NNNERETQSWYQEVSKLKAKFESLQRTQRHLLGEDLGPL 117

Query:   121 GVXXXXXXXXXXDKTLSLSRQRKTDLMRQHLETLQKKAHDLEEENKQLKFKLEEAIRASG 180
              V          +  L+ +RQRKT +M + +E L++K  +L + NK LK K+   +    
Sbjct:   118 SVKELHNLEKQLEGALTQARQRKTQIMVEQMEELRRKERELGDMNKHLKIKVSHELSTFD 177

Query:   181 AD 182
             A+
Sbjct:   178 AE 179

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|D2T2F9 grcd5 "GRCD5 protein" [Gerbera hybrid cultivar (taxid:18101)]

 Score = 354 (129.7 bits), Expect = 3.1e-35, Sum P(2) = 3.1e-35
 Identities = 82/176 (46%), Positives = 103/176 (58%)

Query:     1 MGRGKMVLERIQNKINRQATFAKRRDGLLKKAYELSLLCDAEVALIIFSSHGMLFEFGSN 60
             MGRG++ L+RI+NKINRQ TFAKRR+GLLKKAYELS+LCDAEVALIIFS+ G L+EF S+
Sbjct:     1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60

Query:    61 FGMAKILERYRQYCYTSQEPIDINQLEPXXXXXXXXXXXXXXXXXXX--XQRHFLGEDLG 118
               M K LERY++  Y + +  +++  E                       QR+ LGEDLG
Sbjct:    61 SSMLKTLERYQKCNYGAPDQTNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEDLG 120

Query:   119 TLGVXXXXXXXXXXDKTLSLSRQRKTDLMRQHLETLQKKAHDLEEENKQLKFKLEE 174
              L            D +L   R  +T LM   L  LQKK H L E N+ LK +L E
Sbjct:   121 PLNCKELESLERQLDTSLKHIRSARTQLMLDTLTDLQKKEHALNEANRTLKQRLIE 176

GO:0005515 "protein binding" evidence=IPI

GO:0042802 "identical protein binding" evidence=IPI

UNIPROTKB|Q7XUN2 MADS17 "MADS-box transcription factor 17" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 381 (139.2 bits), Expect = 3.1e-35, P = 3.1e-35
 Identities = 86/174 (49%), Positives = 108/174 (62%)

Query:     1 MGRGKMVLERIQNKINRQATFAKRRDGLLKKAYELSLLCDAEVALIIFSSHGMLFEFGSN 60
             MGRG++ L+RI+NKINRQ TF+KRR+GLLKKAYELS+LCDAEVALIIFSS G L+EFGS 
Sbjct:     1 MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSA 60

Query:    61 FGMAKILERYRQYCYTSQEPID-INQLEPXXXXXXXXXXXXXXXXXXXXQRHFLGEDLGT 119
              G+ K LE+Y   CY +Q     +   E                     QRH LGEDLG 
Sbjct:    61 -GINKTLEKYNSCCYNAQGSNSALAGGEHQSWYQEMSRLKTKLECLQRSQRHMLGEDLGP 119

Query:   120 LGVXXXXXXXXXXDKTLSLSRQRKTDLMRQHLETLQKKAHDLEEENKQLKFKLE 173
             L +          + +LS +RQRKT +M + ++ L++K   L E NKQLK KLE
Sbjct:   120 LSIKELQQLEKQLEYSLSQARQRKTQIMMEQVDDLRRKERQLGELNKQLKNKLE 173

GO:0010093 "specification of floral organ identity" evidence=IMP

UNIPROTKB|Q6EUV7 grcd2 "MADS domain protein" [Gerbera hybrid cultivar (taxid:18101)]

 Score = 351 (128.6 bits), Expect = 1.0e-34, Sum P(2) = 1.0e-34
 Identities = 86/191 (45%), Positives = 101/191 (52%)

Query:     1 MGRGKMVLERIQNKINRQATFAKRRDGLLKKAYELSLLCDAEVALIIFSSHGMLFEFGSN 60
             MGRG++ L+RI+NKINRQ TFAKRR+GLLKKAYELS+LCDAEVALIIFS+ G LFEF S 
Sbjct:     1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLFEFCST 60

Query:    61 FGMAKILERYRQYCYTSQEPIDINQLEPXXXXXXXXXXXXXXXXXXXXQRHFLGEDLGTL 120
               M K+LERY+   Y S E                             QR   GEDLG L
Sbjct:    61 SNMLKMLERYQNCTYGSMEVDRSTPNAEQSSYKEYMKLKAKYESLQQYQRQLFGEDLGPL 120

Query:   121 GVXXXXXXXXXXDKTLSLSRQRKTDLMRQHLETLQKKAHDLEEENKQLKFKLEEAIRASG 180
              +          D TL   R  +T  M   L  LQ K     E NK L+ KLEE    + 
Sbjct:   121 SLKELEQLERQLDSTLRQIRSIRTQSMLDRLSELQVKERMWVEANKALQNKLEEVYAENQ 180

Query:   181 ADPNIAVITNH 191
             A P+ A   +H
Sbjct:   181 AGPSWAAGEHH 191

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|Q9ATF1 FBP9 "MADS-box transcription factor FBP9" [Petunia x hybrida (taxid:4102)]

 Score = 371 (135.7 bits), Expect = 3.6e-34, P = 3.6e-34
 Identities = 85/175 (48%), Positives = 105/175 (60%)

Query:     1 MGRGKMVLERIQNKINRQATFAKRRDGLLKKAYELSLLCDAEVALIIFSSHGMLFEFGSN 60
             MGRG++ L+RI+NKINRQ TFAKRR+GLLKKAYELS+LCDAEVALIIFSS G L+EF S 
Sbjct:     1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCST 60

Query:    61 FGMAKILERYRQYCYTSQEPIDINQLEPXXXXXXXXXXXXXXXXXXXXQRHFLGEDLGTL 120
               M K LE+Y+Q  Y S +P+  +  +                     QR+ LGEDLG+L
Sbjct:    61 SSMMKTLEKYQQCSYASLDPMQ-SANDTQNNYHEYLRLKARVELLQRSQRNLLGEDLGSL 119

Query:   121 GVXXXXXXXXXXDKTLSLSRQRKTDLMRQHLETLQKKAHDLEEENKQLKFKLEEA 175
                         D +L   R +KT  M   L  LQ+K   L E NKQL+ KLEE+
Sbjct:   120 NSKELEQLEHQLDSSLKQIRSKKTQHMLDQLADLQQKEQMLAEANKQLRRKLEES 174

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2043600 AGL6 "AT2G45650" [Arabidopsis thaliana (taxid:3702)]

 Score = 366 (133.9 bits), Expect = 1.2e-33, P = 1.2e-33
 Identities = 82/175 (46%), Positives = 106/175 (60%)

Query:     1 MGRGKMVLERIQNKINRQATFAKRRDGLLKKAYELSLLCDAEVALIIFSSHGMLFEFGSN 60
             MGRG++ ++RI+NKINRQ TF+KRR+GLLKKAYELS+LCDAEVALIIFSS G L+EFGS 
Sbjct:     1 MGRGRVEMKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGS- 59

Query:    61 FGMAKILERYRQYCYTSQEPIDINQLEPXXXX--XXXXXXXXXXXXXXXXQRHFLGEDLG 118
              G+   +ERY + CY     +  N+ E                        R+ LGEDLG
Sbjct:    60 VGIESTIERYNR-CYNCS--LSNNKPEETTQSWCQEVTKLKSKYESLVRTNRNLLGEDLG 116

Query:   119 TLGVXXXXXXXXXXDKTLSLSRQRKTDLMRQHLETLQKKAHDLEEENKQLKFKLE 173
              +GV          +  L+ +RQRKT +M + +E L+KK   L + NKQLK K E
Sbjct:   117 EMGVKELQALERQLEAALTATRQRKTQVMMEEMEDLRKKERQLGDINKQLKIKFE 171

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=IMP

GO:0048437 "floral organ development" evidence=IMP

GO:0009911 "positive regulation of flower development" evidence=IMP

GO:0048481 "ovule development" evidence=RCA

UNIPROTKB|Q03489 FBP2 "Agamous-like MADS-box protein AGL9 homolog" [Petunia x hybrida (taxid:4102)]

 Score = 359 (131.4 bits), Expect = 6.7e-33, P = 6.7e-33
 Identities = 98/244 (40%), Positives = 126/244 (51%)

Query:     1 MGRGKMVLERIQNKINRQATFAKRRDGLLKKAYELSLLCDAEVALIIFSSHGMLFEFGSN 60
             MGRG++ L+RI+NKINRQ TFAKRR+GLLKKAYELS+LCDAEVALIIFS+ G L+EF S+
Sbjct:     1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60

Query:    61 FGMAKILERYRQYCYTSQEP-IDINQLEPXXXXXXXXXXXXXXXXXXXXQRHFLGEDLGT 119
               M K LERY++  Y + E  I   +                       QR+ LGEDLG 
Sbjct:    61 SSMLKTLERYQKCNYGAPETNISTREALEISSQQEYLKLKARYEALQRSQRNLLGEDLGP 120

Query:   120 LGVXXXXXXXXXXDKTLSLSRQRKTDLMRQHLETLQKKAHDLEEENKQLKFKLEEAI--- 176
             L            D +L   R  +T LM   L+ LQ+K H L E N+ LK +L E     
Sbjct:   121 LNSKELESLERQLDMSLKQIRSTRTQLMLDQLQDLQRKEHALNEANRTLKQRLMEGSTLN 180

Query:   177 ---RASGADPNI---AVITN-----H-LRVHPAQQMGYNAHDRANIGAASDFVSGAISPA 224
                + +  D      A  T      H L   P  Q+GY  +D   +G A   V+  ++  
Sbjct:   181 LQWQQNAQDVGYGRQATQTQGDGFFHPLECEPTLQIGYQ-NDPITVGGAGPSVNNYMA-- 237

Query:   225 QGWL 228
              GWL
Sbjct:   238 -GWL 240

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|O65874 MTF1 "MADS-box transcription factor 1" [Pisum sativum (taxid:3888)]

 Score = 327 (120.2 bits), Expect = 6.9e-32, Sum P(2) = 6.9e-32
 Identities = 82/213 (38%), Positives = 113/213 (53%)

Query:     1 MGRGKMVLERIQNKINRQATFAKRRDGLLKKAYELSLLCDAEVALIIFSSHGMLFEFGSN 60
             MGRG++ L+R++NKINRQ TFAKRR+GLLKKAYELS+LCDAEVALI+FS+ G L+EF S 
Sbjct:     1 MGRGRVELKRVENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIVFSNRGKLYEFCST 60

Query:    61 FGMAKILERYRQYCYTSQEPIDINQLEPXXXXXXXXXXX----XXXXXXXXXQRHFLGED 116
               M K LERY++  Y + E  ++   E                         QR+ +GED
Sbjct:    61 SSMLKTLERYQKCNYGAPEG-NVTSKEALVLELSSQQEYLKLKARYESLQRSQRNLMGED 119

Query:   117 LGTLGVXXXXXXXXXXDKTLSLSRQRKTDLMRQHLETLQKKAHDLEEENKQLKFKLEEAI 176
             LG L            D +L   R  +T  M   L  LQ+K H L E N+ L+ ++E   
Sbjct:   120 LGPLSSKDLETLERQLDSSLKQIRSTRTQFMLDQLGDLQRKEHLLCEANRALRQRME-GY 178

Query:   177 RASGADPNIAVITNHLRVHPAQQMGYNAHDRAN 209
             + +    N++          A+ MGY  H + +
Sbjct:   179 QINSLQLNLS----------AEDMGYGRHHQGH 201

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=NAS

GO:0005634 "nucleus" evidence=IC

GO:0006355 "regulation of transcription, DNA-dependent" evidence=NAS

GO:0009888 "tissue development" evidence=NAS

TAIR|locus:2032372 SEP3 "SEPALLATA3" [Arabidopsis thaliana (taxid:3702)]

 Score = 347 (127.2 bits), Expect = 1.3e-31, P = 1.3e-31
 Identities = 85/204 (41%), Positives = 111/204 (54%)

Query:     1 MGRGKMVLERIQNKINRQATFAKRRDGLLKKAYELSLLCDAEVALIIFSSHGMLFEFGSN 60
             MGRG++ L+RI+NKINRQ TFAKRR+GLLKKAYELS+LCDAEVALIIFS+ G L+EF S+
Sbjct:     1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60

Query:    61 FGMAKILERYRQYCYTSQEPIDINQLEPXXXXXXXXXXXXXXX----XXXXXQRHFLGED 116
               M + LERY++  Y + EP ++   E                         QR+ LGED
Sbjct:    61 SSMLRTLERYQKCNYGAPEP-NVPSREALAVELSSQQEYLKLKERYDALQRTQRNLLGED 119

Query:   117 LGTLGVXXXXXXXXXXDKTLSLSRQRKTDLMRQHLETLQKKAHDLEEENKQLKFKLEEAI 176
             LG L            D +L   R  +T  M   L  LQ K   L E NK L+ +L +  
Sbjct:   120 LGPLSTKELESLERQLDSSLKQIRALRTQFMLDQLNDLQSKERMLTETNKTLRLRLADGY 179

Query:   177 RAS-GADPNIAVITNHLRVHPAQQ 199
             +     +PN   + ++ R H  QQ
Sbjct:   180 QMPLQLNPNQEEVDHYGRHHHQQQ 203

GO:0003677 "DNA binding" evidence=IEA;ISS;IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0001708 "cell fate specification" evidence=RCA;IMP

GO:0010093 "specification of floral organ identity" evidence=RCA;IMP

GO:0009908 "flower development" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0048481 "ovule development" evidence=RCA;IMP

GO:0048833 "specification of floral organ number" evidence=IMP

GO:0048440 "carpel development" evidence=RCA

GO:0048507 "meristem development" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P29386	AGL6_ARATH	No assigned EC number	0.4268	0.9605	0.8690	yes	no
Q6EU39	MADS6_ORYSJ	No assigned EC number	0.6091	0.7456	0.68	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	228
cd00265	77	cd00265, MADS_MEF2_like, MEF2 (myocyte enhancer fa	7e-36
smart00432	59	smart00432, MADS, MADS domain	5e-28
cd00120	59	cd00120, MADS, MADS: MCM1, Agamous, Deficiens, and	4e-27
pfam01486	100	pfam01486, K-box, K-box region	8e-25
cd00266	83	cd00266, MADS_SRF_like, SRF-like/Type I subfamily	1e-22
pfam00319	51	pfam00319, SRF-TF, SRF-type transcription factor (	4e-21
COG5068	412	COG5068, ARG80, Regulator of arginine metabolism a	1e-10

>gnl|CDD|238165 cd00265, MADS_MEF2_like, MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators

 Score =  121 bits (305), Expect = 7e-36
 Identities = 49/77 (63%), Positives = 62/77 (80%), Gaps = 1/77 (1%)

Query: 2  GRGKMVLERIQNKINRQATFAKRRDGLLKKAYELSLLCDAEVALIIFSSHGMLFEFGSNF 61
          GRGK+ ++RI+N  NRQ TF+KRR+GLLKKA+ELS+LCDAEVALIIFSS G L+EF S  
Sbjct: 1  GRGKIEIKRIENSTNRQVTFSKRRNGLLKKAHELSVLCDAEVALIIFSSSGKLYEFSSP- 59

Query: 62 GMAKILERYRQYCYTSQ 78
           M KI+ERY++   +S 
Sbjct: 60 SMEKIIERYQKTSGSSL 76

Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I subgroup mainly in position of the alpha helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi. Length = 77

>gnl|CDD|197721 smart00432, MADS, MADS domain

 Score =  100 bits (252), Expect = 5e-28
 Identities = 39/58 (67%), Positives = 49/58 (84%)

Query: 2  GRGKMVLERIQNKINRQATFAKRRDGLLKKAYELSLLCDAEVALIIFSSHGMLFEFGS 59
          GR K+ ++RI+NK NRQ TF+KRR+GL KKA+ELS+LCDAEVALI+FS  G L+EF S
Sbjct: 1  GRRKIEIKRIENKTNRQVTFSKRRNGLFKKAHELSVLCDAEVALIVFSPTGKLYEFAS 58

Length = 59

>gnl|CDD|238067 cd00120, MADS, MADS: MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptonal regulators

 Score = 98.4 bits (246), Expect = 4e-27
 Identities = 38/58 (65%), Positives = 49/58 (84%)

Query: 2  GRGKMVLERIQNKINRQATFAKRRDGLLKKAYELSLLCDAEVALIIFSSHGMLFEFGS 59
          GRGK+ ++RI+NK +RQ TF+KRR+GL KKA ELS+LCDAEVA+I+FS  G L+EF S
Sbjct: 1  GRGKIEIKRIENKTSRQVTFSKRRNGLFKKASELSVLCDAEVAVIVFSPSGKLYEFWS 58

Binds DNA and exists as hetero and homo-dimers. Composed of 2 main subgroups: SRF-like/Type I and MEF2-like (myocyte enhancer factor 2)/ Type II. These subgroups differ mainly in position of the alpha 2 helix responsible for the dimerization interface; Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi. Length = 59

>gnl|CDD|216525 pfam01486, K-box, K-box region

 Score = 93.4 bits (233), Expect = 8e-25
 Identities = 46/100 (46%), Positives = 66/100 (66%)

Query: 75  YTSQEPIDINQLEPEALFREILRLRALRESLERSQRHFLGEDLGTLGVKELQKLEKQLDK 134
           Y      D+ + + E L +E  +L+   E+L+R QRH LGEDLG+L +KELQ+LE+QL+ 
Sbjct: 1   YQKLSGNDLWESKYENLQQEAAKLKKQNENLQREQRHLLGEDLGSLSLKELQQLEQQLEN 60

Query: 135 TLSLSRQRKTDLMRQHLETLQKKAHDLEEENKQLKFKLEE 174
            L   R RK +L+   +E LQKK  +L+EEN+ L+ KLEE
Sbjct: 61  GLKHIRSRKNELLLNQIEELQKKERELQEENRNLRQKLEE 100

The K-box region is commonly found associated with SRF-type transcription factors see pfam00319. The K-box is a possible coiled-coil structure. Possible role in multimer formation. Length = 100

>gnl|CDD|238166 cd00266, MADS_SRF_like, SRF-like/Type I subfamily of MADS (MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators

 Score = 86.9 bits (216), Expect = 1e-22
 Identities = 33/70 (47%), Positives = 47/70 (67%)

Query: 2  GRGKMVLERIQNKINRQATFAKRRDGLLKKAYELSLLCDAEVALIIFSSHGMLFEFGSNF 61
          GR K+ ++RI+NK  R  TF+KRR GL KKA ELS LC AEVA+I++S  G L+ F  + 
Sbjct: 1  GRKKIKIKRIENKKKRAVTFSKRRQGLFKKASELSTLCGAEVAVIVYSPSGKLYVFWPSS 60

Query: 62 GMAKILERYR 71
           +  ++ R+ 
Sbjct: 61 EVEGVISRFE 70

Binds DNA and exists as hetero- and homo-dimers. Differs from the MEF-like/Type II subgroup mainly in position of the alpha 2 helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi. Length = 83

>gnl|CDD|109379 pfam00319, SRF-TF, SRF-type transcription factor (DNA-binding and dimerisation domain)

 Score = 82.4 bits (204), Expect = 4e-21
 Identities = 35/51 (68%), Positives = 45/51 (88%)

Query: 9  ERIQNKINRQATFAKRRDGLLKKAYELSLLCDAEVALIIFSSHGMLFEFGS 59
          +RI+NK NRQ TF+KRR+G+ KKA+ELS+LCDAEVA+IIFSS G L+E+ S
Sbjct: 1  KRIENKSNRQVTFSKRRNGIFKKAHELSVLCDAEVAVIIFSSTGKLYEYSS 51

Length = 51

>gnl|CDD|227400 COG5068, ARG80, Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]

 Score = 60.0 bits (145), Expect = 1e-10
 Identities = 30/108 (27%), Positives = 48/108 (44%), Gaps = 17/108 (15%)

Query: 1   MGRGKMVLERIQNKINRQATFAKRRDGLLKKAYELSLLCDAEVALIIFSSHGMLFEFGSN 60
           +   K+ +  I NK  R  TF+KR+ G+ KKA+ELS+L   EV L++ S +G++  F   
Sbjct: 81  VTGRKIGISYITNKTKRSVTFSKRKHGINKKAFELSVLTGTEVLLLVISENGLVHTF--- 137

Query: 61  FGMAKILERYRQYCYTSQEPIDINQLEPEALFREILRLRALRESLERS 108
                          T +    +  LE ++L +          S E S
Sbjct: 138 --------------TTPKLESVVKSLEGKSLIQSPCSNAPSDSSEEPS 171

Length = 412

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	228
KOG0014	195	consensus MADS box transcription factor [Transcrip	100.0
cd00265	77	MADS_MEF2_like MEF2 (myocyte enhancer factor 2)-li	100.0
cd00266	83	MADS_SRF_like SRF-like/Type I subfamily of MADS (M	99.97
smart00432	59	MADS MADS domain.	99.96
cd00120	59	MADS MADS: MCM1, Agamous, Deficiens, and SRF (seru	99.96
PF00319	51	SRF-TF: SRF-type transcription factor (DNA-binding	99.94
PF01486	100	K-box: K-box region; InterPro: IPR002487 MADS gene	99.85
KOG0015	338	consensus Regulator of arginine metabolism and rel	99.78
COG5068	412	ARG80 Regulator of arginine metabolism and related	99.48
PF06005	72	DUF904: Protein of unknown function (DUF904); Inte	95.26
PRK04098	158	sec-independent translocase; Provisional	91.31
PF10584	23	Proteasome_A_N: Proteasome subunit A N-terminal si	91.04
PRK15422	79	septal ring assembly protein ZapB; Provisional	88.42
cd07429	108	Cby_like Chibby, a nuclear inhibitor of Wnt/beta-c	88.26
PF01166	59	TSC22: TSC-22/dip/bun family; InterPro: IPR000580	85.79
PF06698	59	DUF1192: Protein of unknown function (DUF1192); In	85.46
smart00787	312	Spc7 Spc7 kinetochore protein. This domain is foun	85.34
PF08317	325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	84.79
PF07926	132	TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro:	84.59
PRK10884	206	SH3 domain-containing protein; Provisional	83.11
PRK13169	110	DNA replication intiation control protein YabA; Re	81.17
COG3074	79	Uncharacterized protein conserved in bacteria [Fun	81.13
PF06156	107	DUF972: Protein of unknown function (DUF972); Inte	81.08

>KOG0014 consensus MADS box transcription factor [Transcription]

Probab=100.00  E-value=5.6e-41  Score=278.57  Aligned_cols=164  Identities=43%  Similarity=0.618  Sum_probs=135.1

Q ss_pred             CCccccceeeecCCccchhHHHhhhhhHhhhhhhhhcccCcchhheeeecCCccccccccc-chhHHHHHHHhhccCCCC
Q 046479            1 MGRGKMVLERIQNKINRQATFAKRRDGLLKKAYELSLLCDAEVALIIFSSHGMLFEFGSNF-GMAKILERYRQYCYTSQE   79 (228)
Q Consensus         1 MgR~Ki~ikrIen~~~RqvTFsKRr~GL~KKA~ELSvLCdaeValIvfS~~Gkl~ef~s~~-s~~~ileRY~~~~~~~~~   79 (228)
                      |||+||+|+||+|+++|||||+|||+||||||+|||||||||||||||||+|++|+|++++ +|..|++||.........
T Consensus         1 M~R~ki~i~~Ien~~~RqvTFsKRr~GL~KKA~ELsvLCd~eiavIifsp~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~   80 (195)
T KOG0014|consen    1 MGRGKIEIKRIENESSRQVTFSKRRNGLFKKASELSVLCDAEIAVIVFSPSGKLYEFGSSDESVDAVVDRFLNLTEPSRK   80 (195)
T ss_pred             CCCCccceeeccccchhhhhhHHHHhhHHHHHHHHHHhcCCeEEEEEECCCCCccccCCcchhHHHHHHHHHhhhhhhhc
Confidence            9999999999999999999999999999999999999999999999999999999998843 499999999987766543


Q ss_pred             CCCCCCcch---------------------HHHHHHHHHHHHHHHHHHH---HhhhhcCCCCCCCCH-HHHHHHHHHHHH
Q 046479           80 PIDINQLEP---------------------EALFREILRLRALRESLER---SQRHFLGEDLGTLGV-KELQKLEKQLDK  134 (228)
Q Consensus        80 ~~~~~~~e~---------------------q~l~~E~~kLk~kie~Lq~---~~r~l~Ge~L~~LS~-~EL~~LE~qLe~  134 (228)
                      . .....+.                     +.+..+...++...+.++.   .++++.|++|.+++. .+|..++.+++.
T Consensus        81 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~~~~l~~~~~~l~~  159 (195)
T KOG0014|consen   81 K-KRVNLESFLRNKKLTELVEEEEKEELKLQLKKSLESSLKVDPEDLELLELEQRKLTGEDLQSLSSLNELNSLESQLES  159 (195)
T ss_pred             c-cccchhhHhhhhhhhcccchhhhhhccchhhhhhhhhhhcchhhhhhhHHHHHHHhccccccCCHHHHhcchhhHHHH
Confidence            3 2222211                     1133445556666666653   478999999999999 999999999999


Q ss_pred             hhHHHHHHHhhhHHHHHH-HHHHHHHhHHHHH
Q 046479          135 TLSLSRQRKTDLMRQHLE-TLQKKAHDLEEEN  165 (228)
Q Consensus       135 sL~~IR~rK~ql~~~~i~-~LkkKe~~L~eeN  165 (228)
                      ++..+|..+...+.+++. .++.++..+.+.|
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (195)
T KOG0014|consen  160 SLHNSRSSKSKPLSDSNFQVLQEKEKSLEAEN  191 (195)
T ss_pred             hhcCCCCCCCcCCcchhhhhhcccchhccccC
Confidence            999999999999999887 6666666555443

>cd00265 MADS_MEF2_like MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators

Probab=100.00  E-value=2.8e-34  Score=204.99  Aligned_cols=74  Identities=65%  Similarity=0.978  Sum_probs=71.1

Q ss_pred             CccccceeeecCCccchhHHHhhhhhHhhhhhhhhcccCcchhheeeecCCcccccccccchhHHHHHHHhhccC
Q 046479            2 GRGKMVLERIQNKINRQATFAKRRDGLLKKAYELSLLCDAEVALIIFSSHGMLFEFGSNFGMAKILERYRQYCYT   76 (228)
Q Consensus         2 gR~Ki~ikrIen~~~RqvTFsKRr~GL~KKA~ELSvLCdaeValIvfS~~Gkl~ef~s~~s~~~ileRY~~~~~~   76 (228)
                      ||+||+|++|||+.+|++||+||+.||||||+||||||||+||+|||||+|++|+|+| ++++.||+||...+..
T Consensus         1 gr~ki~i~~i~~~~~r~~tf~kR~~gl~kKa~Els~Lc~~~v~lvv~sp~gk~~~f~s-~s~~~vl~ry~~~~~~   74 (77)
T cd00265           1 GRGKIEIKRIENSTNRQVTFSKRRNGLLKKAHELSVLCDAEVALIIFSSSGKLYEFSS-PSMEKIIERYQKTSGS   74 (77)
T ss_pred             CCCcceeEEecCccHHHHHHHHhhhhhhhcceeheeccCCceeEEEEcCCCceEEecC-CCHHHHHHHHHhcccc
Confidence            8999999999999999999999999999999999999999999999999999999999 5689999999998754

Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I subgroup mainly in position of the alpha helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.

>cd00266 MADS_SRF_like SRF-like/Type I subfamily of MADS (MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators

Probab=99.97  E-value=1.5e-31  Score=193.68  Aligned_cols=78  Identities=42%  Similarity=0.695  Sum_probs=72.6

Q ss_pred             CccccceeeecCCccchhHHHhhhhhHhhhhhhhhcccCcchhheeeecCCcccccccccchhHHHHHHHhhccCCCC
Q 046479            2 GRGKMVLERIQNKINRQATFAKRRDGLLKKAYELSLLCDAEVALIIFSSHGMLFEFGSNFGMAKILERYRQYCYTSQE   79 (228)
Q Consensus         2 gR~Ki~ikrIen~~~RqvTFsKRr~GL~KKA~ELSvLCdaeValIvfS~~Gkl~ef~s~~s~~~ileRY~~~~~~~~~   79 (228)
                      ||+||+|++|+|+.+|+|||+||+.||||||+||||||||+||+|||||+|++|+|++++++..++++|...+...+.
T Consensus         1 gr~Ki~i~~I~~~~~R~~tf~KRk~gl~kKa~ELs~Lc~~~v~~iv~sp~~~~~~~~~~~~~~~~l~~~~~~~~~~~~   78 (83)
T cd00266           1 GRKKIKIKRIENKKKRAVTFSKRRQGLFKKASELSTLCGAEVAVIVYSPSGKLYVFWPSSEVEGVISRFEVLSALERK   78 (83)
T ss_pred             CCccceeEEeeccchhhhhHHHhhhhHHHHHHHHHHhhCCcEEEEEECCCCCcceecCcHHHHHHHHHHhhcCHhhhh
Confidence            899999999999999999999999999999999999999999999999999999988755599999999988765544

Binds DNA and exists as hetero- and homo-dimers. Differs from the MEF-like/Type II subgroup mainly in position of the alpha 2 helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.

>smart00432 MADS MADS domain

Probab=99.96  E-value=1.2e-30  Score=176.40  Aligned_cols=59  Identities=66%  Similarity=1.024  Sum_probs=57.7

Q ss_pred             CccccceeeecCCccchhHHHhhhhhHhhhhhhhhcccCcchhheeeecCCcccccccc
Q 046479            2 GRGKMVLERIQNKINRQATFAKRRDGLLKKAYELSLLCDAEVALIIFSSHGMLFEFGSN   60 (228)
Q Consensus         2 gR~Ki~ikrIen~~~RqvTFsKRr~GL~KKA~ELSvLCdaeValIvfS~~Gkl~ef~s~   60 (228)
                      ||+||+|++|+|+.+|++||+||+.||||||+||||||||+||+|||||+|++|+|++|
T Consensus         1 gR~Ki~i~~I~~~~~R~~tf~kRk~gl~kKa~Els~Lc~~~v~~iv~sp~g~~~~~~~p   59 (59)
T smart00432        1 GRRKIEIKRIENKTNRQVTFSKRRNGLFKKAHELSVLCDAEVALIVFSPTGKLYEFASP   59 (59)
T ss_pred             CCCcceeEEeeCcchhhhhhHhhhhhHHHHHHHHhhccCCeEEEEEECCCCCeeeccCC
Confidence            89999999999999999999999999999999999999999999999999999999873

>cd00120 MADS MADS: MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptonal regulators

Probab=99.96  E-value=6.6e-30  Score=172.82  Aligned_cols=58  Identities=66%  Similarity=1.038  Sum_probs=57.2

Q ss_pred             CccccceeeecCCccchhHHHhhhhhHhhhhhhhhcccCcchhheeeecCCccccccc
Q 046479            2 GRGKMVLERIQNKINRQATFAKRRDGLLKKAYELSLLCDAEVALIIFSSHGMLFEFGS   59 (228)
Q Consensus         2 gR~Ki~ikrIen~~~RqvTFsKRr~GL~KKA~ELSvLCdaeValIvfS~~Gkl~ef~s   59 (228)
                      ||+||+|++|+|+.+|++||+||+.||+|||+||||||||+||+|||||+|++|+|++
T Consensus         1 gr~Ki~i~~I~~~~~R~~tf~kR~~gl~kKa~Els~Lc~~~v~~iv~sp~g~~~~~~~   58 (59)
T cd00120           1 GRGKIEIKRIENKTSRQVTFSKRRNGLFKKASELSVLCDAEVAVIVFSPSGKLYEFWS   58 (59)
T ss_pred             CCccceeEEeeCcchhhhhHHHHhchHHHhhhhheeccCCcEEEEEECCCCCcccccC
Confidence            8999999999999999999999999999999999999999999999999999999987

Binds DNA and exists as hetero and homo-dimers. Composed of 2 main subgroups: SRF-like/Type I and MEF2-like (myocyte enhancer factor 2)/ Type II. These subgroups differ mainly in position of the alpha 2 helix responsible for the dimerization interface; Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.

>PF00319 SRF-TF: SRF-type transcription factor (DNA-binding and dimerisation domain); InterPro: IPR002100 Human serum response factor (SRF) is a ubiquitous nuclear protein important for cell proliferation and differentiation

Probab=99.94  E-value=6.8e-29  Score=162.63  Aligned_cols=51  Identities=57%  Similarity=0.916  Sum_probs=47.2

Q ss_pred             eeecCCccchhHHHhhhhhHhhhhhhhhcccCcchhheeeecCCccccccc
Q 046479            9 ERIQNKINRQATFAKRRDGLLKKAYELSLLCDAEVALIIFSSHGMLFEFGS   59 (228)
Q Consensus         9 krIen~~~RqvTFsKRr~GL~KKA~ELSvLCdaeValIvfS~~Gkl~ef~s   59 (228)
                      |+|+|++.|++||+|||.||||||+|||+||||+||+|||||+|++|.|||
T Consensus         1 K~I~n~~~R~~tf~KRk~gL~KKa~ELs~LC~~~v~~iv~~~~g~~~~f~s   51 (51)
T PF00319_consen    1 KRIENKSRRKVTFSKRKKGLFKKASELSTLCGVDVALIVFSPDGKLYTFPS   51 (51)
T ss_dssp             S--SSHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEEETTSEEEEEES
T ss_pred             CCccchhHhHhHHHHHHhhhhhccceeeeecCCeEEEEEECCCCCEEEecC
Confidence            689999999999999999999999999999999999999999999999987

SRF function is essential for transcriptional regulation of numerous growth-factor-inducible genes, such as c-fos oncogene and muscle-specific actin genes. A core domain of around 90 amino acids is sufficient for the activities of DNA-binding, dimerisation and interaction with accessory factors. Within the core is a DNA-binding region, designated the MADS box [], that is highly similar to many eukaryotic regulatory proteins: among these are MCM1, the regulator of cell type-specific genes in fission yeast; DSRF, a Drosophila trachea development factor; the MEF2 family of myocyte-specific enhancer factors; and the Agamous and Deficiens families of plant homeotic proteins. In SRF, the MADS box has been shown to be involved in DNA-binding and dimerisation []. Proteins belonging to the MADS family function as dimers, the primary DNA-binding element of which is an anti-parallel coiled coil of two amphipathic alpha-helices, one from each subunit. The DNA wraps around the coiled coil allowing the basic N-termini of the helices to fit into the DNA major groove. The chain extending from the helix N-termini reaches over the DNA backbone and penetrates into the minor groove. A 4-stranded, anti-parallel beta-sheet packs against the coiled-coil face opposite the DNA and is the central element of the dimerisation interface. The MADS-box domain is commonly found associated with K-box region see IPR002487 from INTERPRO ; GO: 0003677 DNA binding, 0046983 protein dimerization activity; PDB: 1MNM_B 1N6J_A 1TQE_S 3MU6_D 3P57_I 1EGW_A 1C7U_B 3KOV_A 1HBX_A 1K6O_C ....

>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development

Probab=99.85  E-value=3.9e-21  Score=143.91  Aligned_cols=92  Identities=47%  Similarity=0.695  Sum_probs=87.6

Q ss_pred             CCCcchHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCHHHHHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHHHhHH
Q 046479           83 INQLEPEALFREILRLRALRESLERSQRHFLGEDLGTLGVKELQKLEKQLDKTLSLSRQRKTDLMRQHLETLQKKAHDLE  162 (228)
Q Consensus        83 ~~~~e~q~l~~E~~kLk~kie~Lq~~~r~l~Ge~L~~LS~~EL~~LE~qLe~sL~~IR~rK~ql~~~~i~~LkkKe~~L~  162 (228)
                      .++.+.+.|..++.+|+.+++.|+..+|+++|++|++||++||++||++|+.+|.+||+||+++|.++|..|++|++.|.
T Consensus         9 ~~~~~~e~~~~e~~~L~~~~~~L~~~~R~~~GedL~~Ls~~eL~~LE~~Le~aL~~VR~rK~~~l~~~i~~l~~ke~~l~   88 (100)
T PF01486_consen    9 LWDSQHEELQQEIAKLRKENESLQKELRHLMGEDLESLSLKELQQLEQQLESALKRVRSRKDQLLMEQIEELKKKERELE   88 (100)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34566689999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHH
Q 046479          163 EENKQLKFKLEE  174 (228)
Q Consensus       163 eeN~~L~~k~~~  174 (228)
                      ++|..|+.++.|
T Consensus        89 ~en~~L~~~~~e  100 (100)
T PF01486_consen   89 EENNQLRQKIEE  100 (100)
T ss_pred             HHHHHHHHHhcC
Confidence            999999999863

The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>KOG0015 consensus Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]

Probab=99.78  E-value=2.2e-20  Score=160.24  Aligned_cols=65  Identities=40%  Similarity=0.695  Sum_probs=60.7

Q ss_pred             CccccceeeecCCccchhHHHhhhhhHhhhhhhhhcccCcchhheeeecCCcccccccccchhHHH
Q 046479            2 GRGKMVLERIQNKINRQATFAKRRDGLLKKAYELSLLCDAEVALIIFSSHGMLFEFGSNFGMAKIL   67 (228)
Q Consensus         2 gR~Ki~ikrIen~~~RqvTFsKRr~GL~KKA~ELSvLCdaeValIvfS~~Gkl~ef~s~~s~~~il   67 (228)
                      ||.||+|++|||+..|.||||||+.||||||+|||||.|.+|-|+|.|.+|-+|.|++ +.++.||
T Consensus        63 gr~kik~eyIenK~rR~~tFSKRK~GImKKAyELs~LTGtqVllLVaSEtGhVyTFaT-pKLep~i  127 (338)
T KOG0015|consen   63 GRVKIKMEYIENKLRRYVTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFAT-PKLEPMI  127 (338)
T ss_pred             ceeeccchhhcccceeeeeehhhhhhhHHHHHHhhhcccceEEEEEEecCcceEEecc-ccccccc
Confidence            7999999999999999999999999999999999999999999999999999999999 4454444

>COG5068 ARG80 Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]

Probab=99.48  E-value=1.3e-14  Score=130.06  Aligned_cols=60  Identities=38%  Similarity=0.633  Sum_probs=58.7

Q ss_pred             CCccccceeeecCCccchhHHHhhhhhHhhhhhhhhcccCcchhheeeecCCcccccccc
Q 046479            1 MGRGKMVLERIQNKINRQATFAKRRDGLLKKAYELSLLCDAEVALIIFSSHGMLFEFGSN   60 (228)
Q Consensus         1 MgR~Ki~ikrIen~~~RqvTFsKRr~GL~KKA~ELSvLCdaeValIvfS~~Gkl~ef~s~   60 (228)
                      |||+|+.|..|+|+.+|.|||+||+.||+|||+||+||.|.+|.++|.|.+|+++.|+++
T Consensus        81 ~~~~~~~is~i~nk~~r~vtf~Krk~gI~kka~ElsvLt~~~vl~lvise~g~v~tf~tp  140 (412)
T COG5068          81 VTGRKIGISYITNKTKRSVTFSKRKHGINKKAFELSVLTGTEVLLLVISENGLVHTFTTP  140 (412)
T ss_pred             cccccCCcccccCcccccchhhhhhhhhhhhhhhhhhccCCceEEEEecCCCceeeecCC
Confidence            789999999999999999999999999999999999999999999999999999999984

>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation

Probab=95.26  E-value=0.14  Score=35.93  Aligned_cols=51  Identities=27%  Similarity=0.468  Sum_probs=38.2

Q ss_pred             CCHHHHHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 046479          120 LGVKELQKLEKQLDKTLSLSRQRKTDLMRQHLETLQKKAHDLEEENKQLKFKLEEA  175 (228)
Q Consensus       120 LS~~EL~~LE~qLe~sL~~IR~rK~ql~~~~i~~LkkKe~~L~eeN~~L~~k~~~~  175 (228)
                      +|++.|.+||..+..++..|.     ++..+++.|+.+-..|.++|..|+.+....
T Consensus         1 M~~E~l~~LE~ki~~aveti~-----~Lq~e~eeLke~n~~L~~e~~~L~~en~~L   51 (72)
T PF06005_consen    1 MSLELLEQLEEKIQQAVETIA-----LLQMENEELKEKNNELKEENEELKEENEQL   51 (72)
T ss_dssp             --HHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence            578999999999999999984     455677888888777777777776665443

It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.

>PRK04098 sec-independent translocase; Provisional

Probab=91.31  E-value=0.14  Score=41.27  Aligned_cols=80  Identities=23%  Similarity=0.237  Sum_probs=44.4

Q ss_pred             hhhcccCcchhheeeecCCcccccccccchhHHHHHHHhhccCCCCCCCCCCcc--hHHHHHHHHHHHHHHHHHHHHhhh
Q 046479           34 ELSLLCDAEVALIIFSSHGMLFEFGSNFGMAKILERYRQYCYTSQEPIDINQLE--PEALFREILRLRALRESLERSQRH  111 (228)
Q Consensus        34 ELSvLCdaeValIvfS~~Gkl~ef~s~~s~~~ileRY~~~~~~~~~~~~~~~~e--~q~l~~E~~kLk~kie~Lq~~~r~  111 (228)
                      ||-|+  +=||||||+| +||+++..  .+-+.+-.|++.....+..   .+.+  ...++.+..+.+..++....+.|.
T Consensus         8 EllvI--~vVaLlvfGP-~KLP~~~r--~lGk~ir~~K~~~~~~k~~---l~~Ei~~~elk~e~~k~k~~l~~~~~~l~~   79 (158)
T PRK04098          8 EILVI--LVVAIIFLGP-DKLPQAMV--DIAKFFKAVKKTINDAKST---LDKEINIEEIKEEALKYKKEFESAVESLKK   79 (158)
T ss_pred             HHHHH--HHHHHhhcCc-hHHHHHHH--HHHHHHHHHHHHHHHHHHH---HHHHHhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence            44444  3589999999 58988876  4777888887765432211   1111  124445555555554444443332


Q ss_pred             hcCCCCCCCCHHHHHHH
Q 046479          112 FLGEDLGTLGVKELQKL  128 (228)
Q Consensus       112 l~Ge~L~~LS~~EL~~L  128 (228)
                      .       +++++|..+
T Consensus        80 ~-------~~~eel~~~   89 (158)
T PRK04098         80 K-------LKFEELDDL   89 (158)
T ss_pred             c-------cChHHHHHH
Confidence            1       455555555

>PF10584 Proteasome_A_N: Proteasome subunit A N-terminal signature; InterPro: IPR000426 The proteasome (or macropain) (3

Probab=91.04  E-value=0.085  Score=28.68  Aligned_cols=15  Identities=33%  Similarity=0.689  Sum_probs=12.1

Q ss_pred             chhheeeecCCcccc
Q 046479           42 EVALIIFSSHGMLFE   56 (228)
Q Consensus        42 eValIvfS~~Gkl~e   56 (228)
                      |-.+.+|||.|++|.
T Consensus         2 D~~~t~FSp~Grl~Q   16 (23)
T PF10584_consen    2 DRSITTFSPDGRLFQ   16 (23)
T ss_dssp             SSSTTSBBTTSSBHH
T ss_pred             CCCceeECCCCeEEe
Confidence            345779999999985

4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). This family contains the alpha subunit sequences which range from 210 to 290 amino acids. These sequences are classified as non-peptidase homologues in MEROPS peptidase family T1 (clan PB(T)). ; GO: 0004175 endopeptidase activity, 0006511 ubiquitin-dependent protein catabolic process, 0019773 proteasome core complex, alpha-subunit complex; PDB: 3H4P_M 1IRU_O 3UN4_U 1FNT_A 3OEV_G 3OEU_U 3SDK_U 3DY3_G 3MG7_G 3L5Q_C ....

>PRK15422 septal ring assembly protein ZapB; Provisional

Probab=88.42  E-value=3.4  Score=29.37  Aligned_cols=43  Identities=21%  Similarity=0.464  Sum_probs=31.2

Q ss_pred             CCHHHHHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHHHhHHHHHHH
Q 046479          120 LGVKELQKLEKQLDKTLSLSRQRKTDLMRQHLETLQKKAHDLEEENKQ  167 (228)
Q Consensus       120 LS~~EL~~LE~qLe~sL~~IR~rK~ql~~~~i~~LkkKe~~L~eeN~~  167 (228)
                      +|++=|.+||..+..++.-|     .++.=+|++||.|-..|.+++..
T Consensus         1 MS~EvleqLE~KIqqAvdtI-----~LLqmEieELKekn~~L~~e~~~   43 (79)
T PRK15422          1 MSLEVFEKLEAKVQQAIDTI-----TLLQMEIEELKEKNNSLSQEVQN   43 (79)
T ss_pred             CcHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHH
Confidence            57788899999888888877     45556677777776666665444

>cd07429 Cby_like Chibby, a nuclear inhibitor of Wnt/beta-catenin mediated transcription, and similar proteins

Probab=88.26  E-value=0.8  Score=34.61  Aligned_cols=26  Identities=46%  Similarity=0.630  Sum_probs=21.7

Q ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHH
Q 046479          149 QHLETLQKKAHDLEEENKQLKFKLEE  174 (228)
Q Consensus       149 ~~i~~LkkKe~~L~eeN~~L~~k~~~  174 (228)
                      ..+..||+|.+.|+|||+.|+-|++-
T Consensus        72 ~e~~rlkkk~~~LeEENNlLklKiev   97 (108)
T cd07429          72 REVLRLKKKNQQLEEENNLLKLKIEV   97 (108)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44567888999999999999999874

Chibby(Cby) is a well-conserved nuclear protein that functions as part of the Wnt/beta-catenin signaling pathway. Specifically, Cby binds directly to beta-catenin by interacting with its central region, which harbors armadillo repeats. Cby-beta-catenin interactions may also involve 14-3-3 proteins. By competing with other binding partners of beta-catenin, the Tcf/Lef transcription factors, Cby inhibits transcriptional activation. Cby has been shown to play a role in adipocyte differentiation. The C-terminal region of Cby appears to contain an alpha-helical coiled-coil motif.

>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation

Probab=85.79  E-value=1.8  Score=28.90  Aligned_cols=27  Identities=30%  Similarity=0.603  Sum_probs=19.3

Q ss_pred             hhHHHHHHHHHHHHHhHHHHHHHHHHH
Q 046479          145 DLMRQHLETLQKKAHDLEEENKQLKFK  171 (228)
Q Consensus       145 ql~~~~i~~LkkKe~~L~eeN~~L~~k  171 (228)
                      +.+.++|.+|..+...|+.||..|+..
T Consensus        17 evLK~~I~eL~~~n~~Le~EN~~Lk~~   43 (59)
T PF01166_consen   17 EVLKEQIAELEERNSQLEEENNLLKQN   43 (59)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            355677777777777777777777653

These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.

>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length

Probab=85.46  E-value=1.4  Score=29.68  Aligned_cols=31  Identities=32%  Similarity=0.447  Sum_probs=24.8

Q ss_pred             hhcCCCCCCCCHHHHHHHHHHHHHhhHHHHH
Q 046479          111 HFLGEDLGTLGVKELQKLEKQLDKTLSLSRQ  141 (228)
Q Consensus       111 ~l~Ge~L~~LS~~EL~~LE~qLe~sL~~IR~  141 (228)
                      +..|+||+.||++||..--..|+.-+.+++.
T Consensus        12 ~~ig~dLs~lSv~EL~~RIa~L~aEI~R~~~   42 (59)
T PF06698_consen   12 HEIGEDLSLLSVEELEERIALLEAEIARLEA   42 (59)
T ss_pred             cccCCCchhcCHHHHHHHHHHHHHHHHHHHH
Confidence            5789999999999999877777666666654

The function of this family is unknown.

>smart00787 Spc7 Spc7 kinetochore protein

Probab=85.34  E-value=6.7  Score=35.15  Aligned_cols=63  Identities=24%  Similarity=0.386  Sum_probs=46.5

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhhHHHHHHHhhh--HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 046479          115 EDLGTLGVKELQKLEKQLDKTLSLSRQRKTDL--MRQHLETLQKKAHDLEEENKQLKFKLEEAIR  177 (228)
Q Consensus       115 e~L~~LS~~EL~~LE~qLe~sL~~IR~rK~ql--~~~~i~~LkkKe~~L~eeN~~L~~k~~~~~~  177 (228)
                      +.+++|+.++|..+-..|..-...|...+.++  +.+++..+..+.....+.-..+..++.+...
T Consensus       196 ~e~~~~d~~eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~  260 (312)
T smart00787      196 DELEDCDPTELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEK  260 (312)
T ss_pred             HHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56889999999999999999999887777654  3356666666666666666666666666544

This domain is found in cell division proteins which are required for kinetochore-spindle association.

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []

Probab=84.79  E-value=23  Score=31.71  Aligned_cols=63  Identities=27%  Similarity=0.470  Sum_probs=48.8

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhhHHHHHHHhhh--HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 046479          115 EDLGTLGVKELQKLEKQLDKTLSLSRQRKTDL--MRQHLETLQKKAHDLEEENKQLKFKLEEAIR  177 (228)
Q Consensus       115 e~L~~LS~~EL~~LE~qLe~sL~~IR~rK~ql--~~~~i~~LkkKe~~L~eeN~~L~~k~~~~~~  177 (228)
                      ..++.++..+|..+-..|...-..|..+|..+  +..++..++.+...+.++...+...+.+..+
T Consensus       201 ~e~~~~D~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~  265 (325)
T PF08317_consen  201 EEIESCDQEELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAEK  265 (325)
T ss_pred             hhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45889999999999999999988888777664  3466777777777777777777777776543

>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT)

Probab=84.59  E-value=17  Score=28.17  Aligned_cols=30  Identities=33%  Similarity=0.551  Sum_probs=26.9

Q ss_pred             hhHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 046479          145 DLMRQHLETLQKKAHDLEEENKQLKFKLEE  174 (228)
Q Consensus       145 ql~~~~i~~LkkKe~~L~eeN~~L~~k~~~  174 (228)
                      ..+..+|..++++...|.++|+.|..+|+.
T Consensus       101 ~~le~e~~~~~~r~~dL~~QN~lLh~QlE~  130 (132)
T PF07926_consen  101 EQLEKELSELEQRIEDLNEQNKLLHDQLES  130 (132)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            466889999999999999999999999874

These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore

>PRK10884 SH3 domain-containing protein; Provisional

Probab=83.11  E-value=22  Score=29.88  Aligned_cols=77  Identities=10%  Similarity=0.125  Sum_probs=32.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCHHHHHHHHHHHHHhhHHHH--HHHhhhHHHHHHHHHHHHHhHHHHHHH
Q 046479           90 ALFREILRLRALRESLERSQRHFLGEDLGTLGVKELQKLEKQLDKTLSLSR--QRKTDLMRQHLETLQKKAHDLEEENKQ  167 (228)
Q Consensus        90 ~l~~E~~kLk~kie~Lq~~~r~l~Ge~L~~LS~~EL~~LE~qLe~sL~~IR--~rK~ql~~~~i~~LkkKe~~L~eeN~~  167 (228)
                      .....+.+++.+++.++....++.++ .    -.....+.+.++.+-..|.  ...++-+.+++..++.+...|..+|..
T Consensus        90 ~~~~rlp~le~el~~l~~~l~~~~~~-~----~~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~  164 (206)
T PRK10884         90 SLRTRVPDLENQVKTLTDKLNNIDNT-W----NQRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDD  164 (206)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHhH-H----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455556666666665544443322 1    1222233333333222222  222333344555555555555555544


Q ss_pred             HHHH
Q 046479          168 LKFK  171 (228)
Q Consensus       168 L~~k  171 (228)
                      ++..
T Consensus       165 ~~~~  168 (206)
T PRK10884        165 KQRT  168 (206)
T ss_pred             HHHH
Confidence            4443

>PRK13169 DNA replication intiation control protein YabA; Reviewed

Probab=81.17  E-value=12  Score=28.29  Aligned_cols=49  Identities=31%  Similarity=0.352  Sum_probs=29.4

Q ss_pred             HHHHHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 046479          122 VKELQKLEKQLDKTLSLSRQRKTDLMRQHLETLQKKAHDLEEENKQLKFKLEEA  175 (228)
Q Consensus       122 ~~EL~~LE~qLe~sL~~IR~rK~ql~~~~i~~LkkKe~~L~eeN~~L~~k~~~~  175 (228)
                      ++.+.+||+++...+..+..-|.     ++..|-..-..|.-||..|+..+.+.
T Consensus         7 fd~l~~le~~l~~l~~el~~LK~-----~~~el~EEN~~L~iEN~~Lr~~l~~~   55 (110)
T PRK13169          7 FDALDDLEQNLGVLLKELGALKK-----QLAELLEENTALRLENDKLRERLEEL   55 (110)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            45677788888776666655443     33444444555666666666666654

>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=81.13  E-value=16  Score=25.43  Aligned_cols=49  Identities=20%  Similarity=0.428  Sum_probs=33.1

Q ss_pred             CCHHHHHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 046479          120 LGVKELQKLEKQLDKTLSLSRQRKTDLMRQHLETLQKKAHDLEEENKQLKFKLE  173 (228)
Q Consensus       120 LS~~EL~~LE~qLe~sL~~IR~rK~ql~~~~i~~LkkKe~~L~eeN~~L~~k~~  173 (228)
                      +|++=+.+||..+..++.-|     +++.=+|++||.|-..|..+-..++...+
T Consensus         1 MSlEv~ekLE~KiqqAvdTI-----~LLQmEieELKEknn~l~~e~q~~q~~re   49 (79)
T COG3074           1 MSLEVFEKLEAKVQQAIDTI-----TLLQMEIEELKEKNNSLSQEVQNAQHQRE   49 (79)
T ss_pred             CchHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHhhHhHHHHHHHHHHHH
Confidence            47777888888888887776     45566677777776666555554444433

>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication

Probab=81.08  E-value=13  Score=27.93  Aligned_cols=37  Identities=41%  Similarity=0.608  Sum_probs=20.3

Q ss_pred             HHHHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHH
Q 046479          123 KELQKLEKQLDKTLSLSRQRKTDLMRQHLETLQKKAHDLEEENKQLKFK  171 (228)
Q Consensus       123 ~EL~~LE~qLe~sL~~IR~rK~ql~~~~i~~LkkKe~~L~eeN~~L~~k  171 (228)
                      +.+.+||++|..-+..            |..||.....|.|||..|+.+
T Consensus         8 ~~l~~le~~l~~l~~~------------~~~LK~~~~~l~EEN~~L~~E   44 (107)
T PF06156_consen    8 DRLDQLEQQLGQLLEE------------LEELKKQLQELLEENARLRIE   44 (107)
T ss_pred             HHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHH
Confidence            4566677776555544            455555555555555544444

SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	228
3kov_A	90	Structure Of Mef2a Bound To Dna Reveals A Completel		2e-16
1tqe_P	93	Mechanism Of Recruitment Of Class Ii Histone Deacet		2e-16
1egw_A	77	Crystal Structure Of Mef2a Core Bound To Dna Length		3e-16
1c7u_A	85	Complex Of The Dna Binding Core Domain Of The Trans		9e-16
1n6j_A	93	Structural Basis Of Sequence-Specific Recruitment O		2e-15
3mu6_A	71	Inhibiting The Binding Of Class Iia Histone Deacety		3e-15
1k6o_B	103	Crystal Structure Of A Ternary Sap-1SRFC-Fos Sre Dn		4e-09
1srs_A	92	Serum Response Factor (Srf) Core Complexed With Spe		6e-09
1mnm_A	100	Yeast Matalpha2MCM1DNA TERNARY TRANSCRIPTION COMPLE		3e-08

>pdb|3KOV|A Chain A, Structure Of Mef2a Bound To Dna Reveals A Completely Folded Mads-BoxMEF2 DOMAIN THAT RECOGNIZES DNA AND RECRUITS Transcription Co-Factors Length = 90

Iteration: 1
 Score = 82.4 bits (202), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 39/72 (54%), Positives = 53/72 (73%), Gaps = 1/72 (1%)
Query: 2  GRGKMVLERIQNKINRQATFAKRRDGLLKKAYELSLLCDAEVALIIFSSHGMLFEFGSNF 61
          GR K+ + RI ++ NRQ TF KR+ GL+KKAYELS+LCD E+ALIIF+S   LF++ S  
Sbjct: 1  GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYAST- 59
Query: 62 GMAKILERYRQY 73
           M K+L +Y +Y
Sbjct: 60 DMDKVLLKYTEY 71

>pdb|1TQE|P Chain P, Mechanism Of Recruitment Of Class Ii Histone Deacetylases By Myocyte Enhancer Factor-2 Length = 93

Iteration: 1
 Score = 82.0 bits (201), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 39/73 (53%), Positives = 54/73 (73%), Gaps = 1/73 (1%)
Query: 1  MGRGKMVLERIQNKINRQATFAKRRDGLLKKAYELSLLCDAEVALIIFSSHGMLFEFGSN 60
          MGR K+ + RI ++ NRQ TF KR+ GL+KKAYELS+LCD E+ALIIF+S   LF++ S 
Sbjct: 1  MGRKKIQISRILDQRNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSANRLFQYAST 60
Query: 61 FGMAKILERYRQY 73
            M ++L +Y +Y
Sbjct: 61 -DMDRVLLKYTEY 72

>pdb|1EGW|A Chain A, Crystal Structure Of Mef2a Core Bound To Dna Length = 77

Iteration: 1
 Score = 82.0 bits (201), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 39/72 (54%), Positives = 53/72 (73%), Gaps = 1/72 (1%)
Query: 2  GRGKMVLERIQNKINRQATFAKRRDGLLKKAYELSLLCDAEVALIIFSSHGMLFEFGSNF 61
          GR K+ + RI ++ NRQ TF KR+ GL+KKAYELS+LCD E+ALIIF+S   LF++ S  
Sbjct: 1  GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYAST- 59
Query: 62 GMAKILERYRQY 73
           M K+L +Y +Y
Sbjct: 60 DMDKVLLKYTEY 71

>pdb|1C7U|A Chain A, Complex Of The Dna Binding Core Domain Of The Transcription Factor Mef2a With A 20mer Oligonucleotide Length = 85

Iteration: 1
 Score = 80.1 bits (196), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 39/72 (54%), Positives = 53/72 (73%), Gaps = 1/72 (1%)
Query: 2  GRGKMVLERIQNKINRQATFAKRRDGLLKKAYELSLLCDAEVALIIFSSHGMLFEFGSNF 61
          GR K+ + RI ++ NRQ TF KR+ GL+KKAYELS+L DAE+ALIIF+S   LF++ S  
Sbjct: 1  GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLADAEIALIIFNSSNKLFQYAST- 59
Query: 62 GMAKILERYRQY 73
           M K+L +Y +Y
Sbjct: 60 DMDKVLLKYTEY 71

>pdb|1N6J|A Chain A, Structural Basis Of Sequence-Specific Recruitment Of Histone Deacetylases By Myocyte Enhancer Factor-2 Length = 93

Iteration: 1
 Score = 79.3 bits (194), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 38/72 (52%), Positives = 53/72 (73%), Gaps = 1/72 (1%)
Query: 2  GRGKMVLERIQNKINRQATFAKRRDGLLKKAYELSLLCDAEVALIIFSSHGMLFEFGSNF 61
          GR K+ + RI ++ NRQ TF KR+ GL+KKAYELS+LCD E+ALIIF+S   LF++ S  
Sbjct: 1  GRKKIQISRILDQRNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSANRLFQYAST- 59
Query: 62 GMAKILERYRQY 73
           M ++L +Y +Y
Sbjct: 60 DMDRVLLKYTEY 71

>pdb|3MU6|A Chain A, Inhibiting The Binding Of Class Iia Histone Deacetylases To Myocyte Enhancer Factor-2 By Small Molecules Length = 71

Iteration: 1
 Score = 78.2 bits (191), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 39/72 (54%), Positives = 52/72 (72%), Gaps = 1/72 (1%)
Query: 2  GRGKMVLERIQNKINRQATFAKRRDGLLKKAYELSLLCDAEVALIIFSSHGMLFEFGSNF 61
          GR K+ + RI ++ NRQ TF KR+ GL+KKAYELS+LCD E+ALIIF+S   LF++ S  
Sbjct: 1  GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYAST- 59
Query: 62 GMAKILERYRQY 73
           M K+L +Y  Y
Sbjct: 60 DMDKVLLKYTAY 71

>pdb|1K6O|B Chain B, Crystal Structure Of A Ternary Sap-1SRFC-Fos Sre Dna Complex Length = 103

Iteration: 1
 Score = 58.2 bits (139), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 26/58 (44%), Positives = 39/58 (67%)
Query: 2  GRGKMVLERIQNKINRQATFAKRRDGLLKKAYELSLLCDAEVALIIFSSHGMLFEFGS 59
          GR K+ +E I NK+ R  TF+KR+ G++KKAYELS L   +V L++ S  G ++ F +
Sbjct: 10 GRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFAT 67

>pdb|1SRS|A Chain A, Serum Response Factor (Srf) Core Complexed With Specific Sre Dna Length = 92

Iteration: 1
 Score = 57.4 bits (137), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 26/58 (44%), Positives = 39/58 (67%)
Query: 2  GRGKMVLERIQNKINRQATFAKRRDGLLKKAYELSLLCDAEVALIIFSSHGMLFEFGS 59
          GR K+ +E I NK+ R  TF+KR+ G++KKAYELS L   +V L++ S  G ++ F +
Sbjct: 11 GRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFAT 68

>pdb|1MNM|A Chain A, Yeast Matalpha2MCM1DNA TERNARY TRANSCRIPTION COMPLEX Crystal Structure Length = 100

Iteration: 1
 Score = 55.1 bits (131), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 23/57 (40%), Positives = 40/57 (70%)
Query: 3  RGKMVLERIQNKINRQATFAKRRDGLLKKAYELSLLCDAEVALIIFSSHGMLFEFGS 59
          R K+ ++ I+NK  R  TF+KR+ G++KKA+ELS+L   +V L++ S  G+++ F +
Sbjct: 18 RRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTFST 74

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	228
3p57_A	90	Myocyte-specific enhancer factor 2A; protein-DNA c	4e-36
1hbx_A	92	SRF, serum response factor; gene regulation, trans	3e-35
1mnm_A	100	Protein (MCM1 transcriptional regulator); transcri	4e-35
1egw_A	77	MADS box transcription enhancer factor 2, polypept	5e-35
1k6o_B	103	SRF, serum response factor; protein/DNA complex, t	9e-35
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-04
3lvg_D	190	LCB, clathrin light chain B; SELF assembly, coated	1e-04
1qzv_F	154	Plant photosystem I: subunit PSAF; photosynthesis,	3e-04

>3p57_A Myocyte-specific enhancer factor 2A; protein-DNA complex, transcription factor, transcriptional activation, zinc finger; HET: DNA; 2.19A {Homo sapiens} PDB: 3kov_A* 1tqe_P 1n6j_A Length = 90

 Score =  121 bits (306), Expect = 4e-36
 Identities = 40/86 (46%), Positives = 58/86 (67%), Gaps = 1/86 (1%)

Query: 2  GRGKMVLERIQNKINRQATFAKRRDGLLKKAYELSLLCDAEVALIIFSSHGMLFEFGSNF 61
          GR K+ + RI ++ NRQ TF KR+ GL+KKAYELS+LCD E+ALIIF+S   LF++ S  
Sbjct: 1  GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYAST- 59

Query: 62 GMAKILERYRQYCYTSQEPIDINQLE 87
           M K+L +Y +Y    +   + + +E
Sbjct: 60 DMDKVLLKYTEYNEPHESRTNSDIVE 85

>1hbx_A SRF, serum response factor; gene regulation, transcription complex; 3.15A {Homo sapiens} SCOP: d.88.1.1 PDB: 1srs_A* Length = 92

 Score =  119 bits (301), Expect = 3e-35
 Identities = 26/79 (32%), Positives = 42/79 (53%), Gaps = 1/79 (1%)

Query: 1  MGRGKMVLERIQNKINRQATFAKRRDGLLKKAYELSLLCDAEVALIIFSSHGMLFEFGSN 60
           GR K+ +E I NK+ R  TF+KR+ G++KKAYELS L   +V L++ S  G ++ F + 
Sbjct: 10 RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATR 69

Query: 61 FGMAKILERYRQYCYTSQE 79
            +  ++            
Sbjct: 70 -KLQPMITSETGKALIQTC 87

>1mnm_A Protein (MCM1 transcriptional regulator); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: d.88.1.1 Length = 100

 Score =  119 bits (300), Expect = 4e-35
 Identities = 26/89 (29%), Positives = 47/89 (52%), Gaps = 4/89 (4%)

Query: 1   MGRGKMVLERIQNKINRQATFAKRRDGLLKKAYELSLLCDAEVALIIFSSHGMLFEFGSN 60
             R K+ ++ I+NK  R  TF+KR+ G++KKA+ELS+L   +V L++ S  G+++ F + 
Sbjct: 16  KERRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTFSTP 75

Query: 61  FGMAKILERYRQYCYTSQEPIDINQLEPE 89
                I+ +             +N  + E
Sbjct: 76  -KFEPIVTQQEGRNLIQAC---LNAPDDE 100

>1egw_A MADS box transcription enhancer factor 2, polypeptide A; MADS-box transcription factor, DNA/protein complex, transcription/DNA; HET: DNA; 1.50A {Homo sapiens} SCOP: d.88.1.1 PDB: 1c7u_A 3mu6_A* Length = 77

 Score =  118 bits (298), Expect = 5e-35
 Identities = 39/77 (50%), Positives = 54/77 (70%), Gaps = 1/77 (1%)

Query: 2  GRGKMVLERIQNKINRQATFAKRRDGLLKKAYELSLLCDAEVALIIFSSHGMLFEFGSNF 61
          GR K+ + RI ++ NRQ TF KR+ GL+KKAYELS+LCD E+ALIIF+S   LF++ S  
Sbjct: 1  GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYAST- 59

Query: 62 GMAKILERYRQYCYTSQ 78
           M K+L +Y +Y    +
Sbjct: 60 DMDKVLLKYTEYNEPHE 76

>1k6o_B SRF, serum response factor; protein/DNA complex, transcription factor, combinatorial gene regulation, ETS proteins, MADS-box proteins; 3.19A {Homo sapiens} SCOP: d.88.1.1 Length = 103

 Score =  118 bits (298), Expect = 9e-35
 Identities = 26/79 (32%), Positives = 42/79 (53%), Gaps = 1/79 (1%)

Query: 1  MGRGKMVLERIQNKINRQATFAKRRDGLLKKAYELSLLCDAEVALIIFSSHGMLFEFGSN 60
           GR K+ +E I NK+ R  TF+KR+ G++KKAYELS L   +V L++ S  G ++ F + 
Sbjct: 9  RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATR 68

Query: 61 FGMAKILERYRQYCYTSQE 79
            +  ++            
Sbjct: 69 -KLQPMITSETGKALIQTC 86

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.8 bits (105), Expect = 1e-05
 Identities = 42/250 (16%), Positives = 79/250 (31%), Gaps = 78/250 (31%)

Query: 15  INRQATFAKRRDGLLKKAYELSLLCDAE-VALIIFSSHGML------------------- 54
           ++R   + K R  LL+       L  A+ V +      G+L                   
Sbjct: 131 VSRLQPYLKLRQALLE-------LRPAKNVLI-----DGVLGSGKTWVALDVCLSYKVQC 178

Query: 55  -FEFGS---NFGMAK----ILERYRQYCYTSQEPIDINQLE-PEALFREILRLRALRESL 105
             +F     N         +LE  ++  Y     ID N     +      LR+ +++  L
Sbjct: 179 KMDFKIFWLNLKNCNSPETVLEMLQKLLYQ----IDPNWTSRSDHSSNIKLRIHSIQAEL 234

Query: 106 ER---SQRHFLGEDLGTL-GVKELQKLEKQLD---KTLSLSRQRK-TDLM----RQHLET 153
            R   S+ +     L  L  V+  +      +   K L  +R ++ TD +      H+  
Sbjct: 235 RRLLKSKPY--ENCLLVLLNVQNAKAWNA-FNLSCKILLTTRFKQVTDFLSAATTTHISL 291

Query: 154 LQKKAHDLEEENKQL--KF------KL-EEAIRASGADP-NIAVITNHLRVHPA-----Q 198
                    +E K L  K+       L  E +  +   P  +++I   +R   A     +
Sbjct: 292 DHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTN---PRRLSIIAESIRDGLATWDNWK 348

Query: 199 QMGYNAHDRA 208
            +  +     
Sbjct: 349 HVNCDKLTTI 358

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 40.2 bits (93), Expect = 4e-04
 Identities = 35/224 (15%), Positives = 67/224 (29%), Gaps = 37/224 (16%)

Query: 3   RGKMVLERIQNKINRQATFAKRRDGLLKKAYELSLL-----CDA-----EVALIIFSSHG 52
           R K V + +        +       L       SLL     C       EV         
Sbjct: 273 RFKQVTDFLSAATTTHISLDHHSMTLTP-DEVKSLLLKYLDCRPQDLPREVLTTNPRRLS 331

Query: 53  MLFEFGSNFGMAKILERYRQY-CYTSQEPID--INQLEPEALFREILR-LRALRES---- 104
           ++ E   +       + ++   C      I+  +N LEP A +R++   L     S    
Sbjct: 332 IIAESIRD--GLATWDNWKHVNCDKLTTIIESSLNVLEP-AEYRKMFDRLSVFPPSAHIP 388

Query: 105 ---LERSQRHFLGEDLGTLGVKELQKLEKQLDKTLSLSRQRKTDLMRQHLETLQKKAHDL 161
              L       +  D+      ++  +  +L K   + +Q K   +      L+ K    
Sbjct: 389 TILLSL-----IWFDVIK---SDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKL- 439

Query: 162 EEENKQLKFKLEEAIRASGADPNIAVITNHLRVHPAQQMGYNAH 205
            E    L   + +         +  +I  +L  +    +G+  H
Sbjct: 440 -ENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGH--H 480

>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190

 Score = 40.5 bits (94), Expect = 1e-04
 Identities = 15/97 (15%), Positives = 35/97 (36%), Gaps = 22/97 (22%)

Query: 82  DINQLEPEALFREILRLRALRESLERSQRHFLGEDLGTLGVKELQKLE-KQLDKTLSLSR 140
           D    EPE++       R  RE  E+ +R           ++EL         +    ++
Sbjct: 78  DRLTQEPESI-------RKWRE--EQRKR-----------LQELDAASKVMEQEWREKAK 117

Query: 141 QRKTDLMRQHLETLQK-KAHDLEEENKQLKFKLEEAI 176
           +   +  ++  E ++K K ++   +    +    + I
Sbjct: 118 KDLEEWNQRQSEQVEKNKINNRIADKAFYQQPDADII 154

>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154

 Score = 39.2 bits (90), Expect = 3e-04
 Identities = 8/26 (30%), Positives = 16/26 (61%), Gaps = 3/26 (11%)

Query: 164 ENKQLKFKLEEAIR--ASGADPNIAV 187
           E + LK KL+ +++  A  + P +A+
Sbjct: 18  EKQALK-KLQASLKLYADDSAPALAI 42

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	228
1egw_A	77	MADS box transcription enhancer factor 2, polypept	100.0
3p57_A	90	Myocyte-specific enhancer factor 2A; protein-DNA c	100.0
1mnm_A	100	Protein (MCM1 transcriptional regulator); transcri	100.0
1hbx_A	92	SRF, serum response factor; gene regulation, trans	100.0
1k6o_B	103	SRF, serum response factor; protein/DNA complex, t	100.0
2jee_A	81	YIIU; FTSZ, septum, coiled-coil, cell division, ce	90.88
2w6a_A	63	ARF GTPase-activating protein GIT1; PIX, zinc, sig	84.87
3nmd_A	72	CGMP dependent protein kinase; leucine zipper, coi	83.96
2oqq_A	42	Transcription factor HY5; homodimer leucine zipper	81.76
3hnw_A	138	Uncharacterized protein; coiled-coil, structural g	81.03

>1egw_A MADS box transcription enhancer factor 2, polypeptide A; MADS-box transcription factor, DNA/protein complex, transcription/DNA; HET: DNA; 1.50A {Homo sapiens} SCOP: d.88.1.1 PDB: 1c7u_A 3mu6_A*

Probab=100.00  E-value=1.2e-40  Score=235.63  Aligned_cols=73  Identities=53%  Similarity=0.871  Sum_probs=69.6

Q ss_pred             CccccceeeecCCccchhHHHhhhhhHhhhhhhhhcccCcchhheeeecCCcccccccccchhHHHHHHHhhcc
Q 046479            2 GRGKMVLERIQNKINRQATFAKRRDGLLKKAYELSLLCDAEVALIIFSSHGMLFEFGSNFGMAKILERYRQYCY   75 (228)
Q Consensus         2 gR~Ki~ikrIen~~~RqvTFsKRr~GL~KKA~ELSvLCdaeValIvfS~~Gkl~ef~s~~s~~~ileRY~~~~~   75 (228)
                      ||+||+|++|||+++|||||+|||+||||||+|||||||||||||||||+||+|+|+| ++|++||+||+.++.
T Consensus         1 GR~Ki~ik~I~n~~~R~vTfsKRr~GL~KKA~ELsvLCdaeV~livfs~~gk~~~~~s-~~~~~il~ry~~~~~   73 (77)
T 1egw_A            1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYAS-TDMDKVLLKYTEYNE   73 (77)
T ss_dssp             CCSCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCEEEEES-SCHHHHHHHHHHC--
T ss_pred             CCceeeeEEecCchHHHHHHHHhHHHHHHHHHHHhcccCCeEEEEEECCCCCEeeCCC-CCHHHHHHHHHhccC
Confidence            8999999999999999999999999999999999999999999999999999999998 579999999998764

>3p57_A Myocyte-specific enhancer factor 2A; protein-DNA complex, transcription factor, transcriptional activation, zinc finger; HET: DNA; 2.19A {Homo sapiens} PDB: 3kov_A* 1tqe_P 1n6j_A

Probab=100.00  E-value=5.8e-40  Score=237.65  Aligned_cols=76  Identities=51%  Similarity=0.843  Sum_probs=72.8

Q ss_pred             CccccceeeecCCccchhHHHhhhhhHhhhhhhhhcccCcchhheeeecCCcccccccccchhHHHHHHHhhccCCC
Q 046479            2 GRGKMVLERIQNKINRQATFAKRRDGLLKKAYELSLLCDAEVALIIFSSHGMLFEFGSNFGMAKILERYRQYCYTSQ   78 (228)
Q Consensus         2 gR~Ki~ikrIen~~~RqvTFsKRr~GL~KKA~ELSvLCdaeValIvfS~~Gkl~ef~s~~s~~~ileRY~~~~~~~~   78 (228)
                      ||+||+|++|||+++|||||+|||+||||||+|||||||||||||||||+||+|+|+| ++|..||+||++++....
T Consensus         1 GR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valiifs~~gk~~~f~s-~~~~~il~rY~~~~~~~~   76 (90)
T 3p57_A            1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYAS-TDMDKVLLKYTEYNEPHE   76 (90)
T ss_dssp             CCSCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEES-SCHHHHHHHHHHCCSCCC
T ss_pred             CCCcceeEEecCchHHHHHHHHhhhhHHHHHHHHHhccCCceEEEEECCCCCEEEeCC-CCHHHHHHHHHhcCcccc
Confidence            8999999999999999999999999999999999999999999999999999999999 679999999999876544

>1mnm_A Protein (MCM1 transcriptional regulator); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: d.88.1.1

Probab=100.00  E-value=2.5e-38  Score=232.83  Aligned_cols=73  Identities=33%  Similarity=0.578  Sum_probs=69.8

Q ss_pred             CCccccceeeecCCccchhHHHhhhhhHhhhhhhhhcccCcchhheeeecCCcccccccccchhHHHHHHHhhc
Q 046479            1 MGRGKMVLERIQNKINRQATFAKRRDGLLKKAYELSLLCDAEVALIIFSSHGMLFEFGSNFGMAKILERYRQYC   74 (228)
Q Consensus         1 MgR~Ki~ikrIen~~~RqvTFsKRr~GL~KKA~ELSvLCdaeValIvfS~~Gkl~ef~s~~s~~~ileRY~~~~   74 (228)
                      |||+||+|++|||+++|||||+|||+||||||+||||||||+||||||||+||+|+|+| +++..||++|....
T Consensus        16 mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valivfs~~gk~~~f~s-ps~~~il~r~~G~~   88 (100)
T 1mnm_A           16 KERRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTFST-PKFEPIVTQQEGRN   88 (100)
T ss_dssp             CCCCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEEC-TTTTHHHHSHHHHH
T ss_pred             CCccceeeEEecCcchhhhhhhHhhhhHHHHHHHHHHhcCCcEEEEEecCCCCcceecC-CCHHHHHHHhhCCc
Confidence            89999999999999999999999999999999999999999999999999999999999 57999999997543

>1hbx_A SRF, serum response factor; gene regulation, transcription complex; 3.15A {Homo sapiens} SCOP: d.88.1.1 PDB: 1srs_A*

Probab=100.00  E-value=5.6e-38  Score=228.13  Aligned_cols=70  Identities=37%  Similarity=0.616  Sum_probs=67.8

Q ss_pred             CCccccceeeecCCccchhHHHhhhhhHhhhhhhhhcccCcchhheeeecCCcccccccccchhHHHHHHH
Q 046479            1 MGRGKMVLERIQNKINRQATFAKRRDGLLKKAYELSLLCDAEVALIIFSSHGMLFEFGSNFGMAKILERYR   71 (228)
Q Consensus         1 MgR~Ki~ikrIen~~~RqvTFsKRr~GL~KKA~ELSvLCdaeValIvfS~~Gkl~ef~s~~s~~~ileRY~   71 (228)
                      |||+||+|++|||+++|||||+|||+||||||+||||||||+||||||||+|++|+|+| ++|..+|++|.
T Consensus        10 mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~V~livfs~~gk~~~f~s-~~~~~~i~~~~   79 (92)
T 1hbx_A           10 RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFAT-RKLQPMITSET   79 (92)
T ss_dssp             CCSCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECTTSCEEEEEC-GGGGGGTSSHH
T ss_pred             CCcceEEEEEecChhHHHHHHHHhhhhHHHHHHHHHhhcCCceEEEEECCCCCEEEecC-CCHHHHHhhhc
Confidence            99999999999999999999999999999999999999999999999999999999999 67999999774

>1k6o_B SRF, serum response factor; protein/DNA complex, transcription factor, combinatorial gene regulation, ETS proteins, MADS-box proteins; 3.19A {Homo sapiens} SCOP: d.88.1.1

Probab=100.00  E-value=1.4e-37  Score=230.23  Aligned_cols=77  Identities=38%  Similarity=0.626  Sum_probs=70.9

Q ss_pred             CCccccceeeecCCccchhHHHhhhhhHhhhhhhhhcccCcchhheeeecCCcccccccccchhHHHHH-----HHhhcc
Q 046479            1 MGRGKMVLERIQNKINRQATFAKRRDGLLKKAYELSLLCDAEVALIIFSSHGMLFEFGSNFGMAKILER-----YRQYCY   75 (228)
Q Consensus         1 MgR~Ki~ikrIen~~~RqvTFsKRr~GL~KKA~ELSvLCdaeValIvfS~~Gkl~ef~s~~s~~~ileR-----Y~~~~~   75 (228)
                      |||+||+|++|||+++|||||+|||+||||||+||||||||+||||||||+|++|+|+| ++|..||++     |.+++.
T Consensus         9 mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valivfs~~gk~~~f~s-~~~~~vi~~~~Gk~l~~~c~   87 (103)
T 1k6o_B            9 RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFAT-RKLQPMITSETGKALIQTCL   87 (103)
T ss_dssp             CCSCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECSSSCEEEEEC-GGGGGGTSSHHHHHHHHHTT
T ss_pred             CCcceeEEEEecCchHHHHhHhHhhHhHHHHHHHHHhhhCCceEEEEEeCCCCeeeecC-ccHHHHHHhhhhhHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999 679999997     556554


Q ss_pred             CCC
Q 046479           76 TSQ   78 (228)
Q Consensus        76 ~~~   78 (228)
                      ...
T Consensus        88 ~~~   90 (103)
T 1k6o_B           88 NSP   90 (103)
T ss_dssp             CC-
T ss_pred             cCC
Confidence            433

>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}

Probab=90.88  E-value=1.4  Score=30.59  Aligned_cols=44  Identities=20%  Similarity=0.444  Sum_probs=34.5

Q ss_pred             CCHHHHHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHH
Q 046479          120 LGVKELQKLEKQLDKTLSLSRQRKTDLMRQHLETLQKKAHDLEEENKQL  168 (228)
Q Consensus       120 LS~~EL~~LE~qLe~sL~~IR~rK~ql~~~~i~~LkkKe~~L~eeN~~L  168 (228)
                      +|++=|.+||..+..++..|     +++.-+|++||.|-..|.++|..+
T Consensus         3 MS~ElleqLE~KIq~avdtI-----~lLqmEieELKekN~~L~~e~~e~   46 (81)
T 2jee_A            3 MSLEVFEKLEAKVQQAIDTI-----TLLQMEIEELKEKNNSLSQEVQNA   46 (81)
T ss_dssp             CCHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            68888999999999999887     566677788888777766666553

>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}

Probab=84.87  E-value=6  Score=25.58  Aligned_cols=53  Identities=28%  Similarity=0.439  Sum_probs=40.0

Q ss_pred             CCCCHHHHHHHHHHHHHhhHHHHH--HHhhhHHHHHHHHHHHHHhHHHHHHHHHH
Q 046479          118 GTLGVKELQKLEKQLDKTLSLSRQ--RKTDLMRQHLETLQKKAHDLEEENKQLKF  170 (228)
Q Consensus       118 ~~LS~~EL~~LE~qLe~sL~~IR~--rK~ql~~~~i~~LkkKe~~L~eeN~~L~~  170 (228)
                      ++.++.|.-++..-|-.+=.+|..  +-+.-+.+++.-+|++.+.|+.||..|+.
T Consensus         8 gpit~qeylevK~ALaaSeAkiQQLmkVN~~ls~Elr~mQ~~lq~LQsen~~Lr~   62 (63)
T 2w6a_A            8 GAVTLQEYLELKKALATSEAKVQQLMKVNSSLSDELRKLQREIHKLQAENLQLRQ   62 (63)
T ss_dssp             CSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             CcchHHHHHHHHHHHHhhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHhhhhhhcc
Confidence            567788888887777777666642  22445678888999999999999999874

>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}

Probab=83.96  E-value=7.5  Score=26.20  Aligned_cols=53  Identities=21%  Similarity=0.302  Sum_probs=37.7

Q ss_pred             CCCCCCHHHHHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 046479          116 DLGTLGVKELQKLEKQLDKTLSLSRQRKTDLMRQHLETLQKKAHDLEEENKQLKFKLEEA  175 (228)
Q Consensus       116 ~L~~LS~~EL~~LE~qLe~sL~~IR~rK~ql~~~~i~~LkkKe~~L~eeN~~L~~k~~~~  175 (228)
                      .+++++.  +.+|+..|......||.+.     +.|.+|.+......++.+.|+.++...
T Consensus        14 ~~~~mgt--i~eLq~~L~~K~eELr~kd-----~~I~eLEk~L~ekd~eI~~LqseLDKf   66 (72)
T 3nmd_A           14 SIEGRGS--LRDLQYALQEKIEELRQRD-----ALIDELELELDQKDELIQMLQNELDKY   66 (72)
T ss_dssp             -----CH--HHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             hcccCCc--HHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3444444  8888888999999998874     457788888888888888888887654

>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}

Probab=81.76  E-value=4.5  Score=24.27  Aligned_cols=27  Identities=22%  Similarity=0.421  Sum_probs=22.2

Q ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 046479          147 MRQHLETLQKKAHDLEEENKQLKFKLE  173 (228)
Q Consensus       147 ~~~~i~~LkkKe~~L~eeN~~L~~k~~  173 (228)
                      +.....+|..+...|+.||..|++.+.
T Consensus        15 le~~naeLEervstLq~EN~mLRqvl~   41 (42)
T 2oqq_A           15 LENKNSELEERLSTLQNENQMLRHILK   41 (42)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHhc
Confidence            456678889999999999999998763

>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}

Probab=81.03  E-value=16  Score=27.65  Aligned_cols=71  Identities=13%  Similarity=0.224  Sum_probs=45.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCHHHHHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHH
Q 046479           90 ALFREILRLRALRESLERSQRHFLGEDLGTLGVKELQKLEKQLDKTLSLSRQRKTDLMRQHLETLQKKAHDLEEENKQLK  169 (228)
Q Consensus        90 ~l~~E~~kLk~kie~Lq~~~r~l~Ge~L~~LS~~EL~~LE~qLe~sL~~IR~rK~ql~~~~i~~LkkKe~~L~eeN~~L~  169 (228)
                      +...|+.+++.+++.|+.....+         -+|+..|-..|...-..+..     ...++++|+++...|++++..|.
T Consensus        65 NiadEl~k~~~~~~~L~~~l~~~---------~kE~~~lK~el~~~~~k~e~-----~~~e~~~l~~~~~~l~~~~~~le  130 (138)
T 3hnw_A           65 NIADDYFKAKKMADSLSLDIENK---------DKEIYDLKHELIAAQIKAES-----SAKEIKELKSEINKYQKNIVKLE  130 (138)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHH
Confidence            56778888888888777655544         45666666655554433332     34556677777777777777776


Q ss_pred             HHHHH
Q 046479          170 FKLEE  174 (228)
Q Consensus       170 ~k~~~  174 (228)
                      .++.+
T Consensus       131 ~~~~~  135 (138)
T 3hnw_A          131 TELND  135 (138)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            65543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	228
d1egwa_	71	d.88.1.1 (A:) Myocyte enhancer factor Mef2a core {	2e-31
d1srsa_	84	d.88.1.1 (A:) Serum response factor (SRF) core {Hu	6e-30
d1mnma_	85	d.88.1.1 (A:) MCM1 transcriptional regulator {Bake	4e-29

>d1egwa_ d.88.1.1 (A:) Myocyte enhancer factor Mef2a core {Human (Homo sapiens) [TaxId: 9606]} Length = 71

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: Myocyte enhancer factor Mef2a core
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  108 bits (271), Expect = 2e-31
 Identities = 39/72 (54%), Positives = 53/72 (73%), Gaps = 1/72 (1%)

Query: 2  GRGKMVLERIQNKINRQATFAKRRDGLLKKAYELSLLCDAEVALIIFSSHGMLFEFGSNF 61
          GR K+ + RI ++ NRQ TF KR+ GL+KKAYELS+LCD E+ALIIF+S   LF++ S  
Sbjct: 1  GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYAST- 59

Query: 62 GMAKILERYRQY 73
           M K+L +Y +Y
Sbjct: 60 DMDKVLLKYTEY 71

>d1srsa_ d.88.1.1 (A:) Serum response factor (SRF) core {Human (Homo sapiens) [TaxId: 9606]} Length = 84

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: Serum response factor (SRF) core
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  104 bits (261), Expect = 6e-30
 Identities = 26/75 (34%), Positives = 42/75 (56%), Gaps = 1/75 (1%)

Query: 1  MGRGKMVLERIQNKINRQATFAKRRDGLLKKAYELSLLCDAEVALIIFSSHGMLFEFGSN 60
           GR K+ +E I NK+ R  TF+KR+ G++KKAYELS L   +V L++ S  G ++ F + 
Sbjct: 2  RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATR 61

Query: 61 FGMAKILERYRQYCY 75
            +  ++        
Sbjct: 62 -KLQPMITSETGKAL 75

>d1mnma_ d.88.1.1 (A:) MCM1 transcriptional regulator {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 85

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: MCM1 transcriptional regulator
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  102 bits (256), Expect = 4e-29
 Identities = 24/74 (32%), Positives = 43/74 (58%), Gaps = 1/74 (1%)

Query: 2  GRGKMVLERIQNKINRQATFAKRRDGLLKKAYELSLLCDAEVALIIFSSHGMLFEFGSNF 61
           R K+ ++ I+NK  R  TF+KR+ G++KKA+ELS+L   +V L++ S  G+++ F +  
Sbjct: 3  ERRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTFSTP- 61

Query: 62 GMAKILERYRQYCY 75
              I+ +      
Sbjct: 62 KFEPIVTQQEGRNL 75

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	228
d1egwa_	71	Myocyte enhancer factor Mef2a core {Human (Homo sa	100.0
d1srsa_	84	Serum response factor (SRF) core {Human (Homo sapi	100.0
d1mnma_	85	MCM1 transcriptional regulator {Baker's yeast (Sac	100.0

>d1egwa_ d.88.1.1 (A:) Myocyte enhancer factor Mef2a core {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: Myocyte enhancer factor Mef2a core
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.6e-39  Score=224.42  Aligned_cols=71  Identities=55%  Similarity=0.916  Sum_probs=69.0

Q ss_pred             CccccceeeecCCccchhHHHhhhhhHhhhhhhhhcccCcchhheeeecCCcccccccccchhHHHHHHHhh
Q 046479            2 GRGKMVLERIQNKINRQATFAKRRDGLLKKAYELSLLCDAEVALIIFSSHGMLFEFGSNFGMAKILERYRQY   73 (228)
Q Consensus         2 gR~Ki~ikrIen~~~RqvTFsKRr~GL~KKA~ELSvLCdaeValIvfS~~Gkl~ef~s~~s~~~ileRY~~~   73 (228)
                      ||+||+|++|||+.+|+|||||||+||||||+|||||||||||||||||+|++|+|+| +++++||+||+.+
T Consensus         1 GR~Ki~ik~Ie~~~~R~vTFsKRk~GL~KKa~ELs~LC~~~valiv~s~~gk~~~f~s-~~~~~vl~ry~~~   71 (71)
T d1egwa_           1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYAS-TDMDKVLLKYTEY   71 (71)
T ss_dssp             CCSCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCEEEEES-SCHHHHHHHHHHC
T ss_pred             CCccceEEeccCCchheeehhHhhhhHHHHHHHHhhccCCcEEEEEEcCCCCEEEeeC-CCHHHHHHHHhcC
Confidence            8999999999999999999999999999999999999999999999999999999999 6799999999864

>d1srsa_ d.88.1.1 (A:) Serum response factor (SRF) core {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: Serum response factor (SRF) core
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.1e-37  Score=219.10  Aligned_cols=72  Identities=36%  Similarity=0.585  Sum_probs=69.5

Q ss_pred             CCccccceeeecCCccchhHHHhhhhhHhhhhhhhhcccCcchhheeeecCCcccccccccchhHHHHHHHhh
Q 046479            1 MGRGKMVLERIQNKINRQATFAKRRDGLLKKAYELSLLCDAEVALIIFSSHGMLFEFGSNFGMAKILERYRQY   73 (228)
Q Consensus         1 MgR~Ki~ikrIen~~~RqvTFsKRr~GL~KKA~ELSvLCdaeValIvfS~~Gkl~ef~s~~s~~~ileRY~~~   73 (228)
                      +||+||+|++|||+.+|+|||+|||+||||||+||||||||+||||||||+|++|+|+| ++++.|+++|...
T Consensus         2 ~GR~Ki~i~~Ie~~~~R~vTFsKRr~GL~KKa~ELs~Lc~~~v~liv~s~~gk~~~f~s-~~~~~vi~~~~~~   73 (84)
T d1srsa_           2 RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFAT-RKLQPMITSETGK   73 (84)
T ss_dssp             CCCCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECTTCCEEEEEC-GGGHHHHSSHHHH
T ss_pred             CCCceeeEEeecCcchhhhhhHHhhhhHHHHHHHHhcccCCcEEEEEEcCCCCEEEeeC-CCHHHHHHHHHHH
Confidence            69999999999999999999999999999999999999999999999999999999999 6799999999754

>d1mnma_ d.88.1.1 (A:) MCM1 transcriptional regulator {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: MCM1 transcriptional regulator
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=5e-37  Score=218.51  Aligned_cols=73  Identities=33%  Similarity=0.585  Sum_probs=70.1

Q ss_pred             CccccceeeecCCccchhHHHhhhhhHhhhhhhhhcccCcchhheeeecCCcccccccccchhHHHHHHHhhcc
Q 046479            2 GRGKMVLERIQNKINRQATFAKRRDGLLKKAYELSLLCDAEVALIIFSSHGMLFEFGSNFGMAKILERYRQYCY   75 (228)
Q Consensus         2 gR~Ki~ikrIen~~~RqvTFsKRr~GL~KKA~ELSvLCdaeValIvfS~~Gkl~ef~s~~s~~~ileRY~~~~~   75 (228)
                      ||+||+|++|+|+.+|+|||+|||+||||||+||||||||+||||||||+|++|+|+| |+|+.|++||...+.
T Consensus         3 ~R~Ki~i~~I~~~~~R~vTFsKRr~GL~KKa~ELsvLc~a~vaviv~s~~gk~~~f~s-p~v~~vl~r~~~~~~   75 (85)
T d1mnma_           3 ERRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTFST-PKFEPIVTQQEGRNL   75 (85)
T ss_dssp             CCCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEEC-TTTTHHHHSHHHHHH
T ss_pred             CccceEEEEecCCchhhhhhHHHHhhHHHHHHHHhccCCCcEEEEEEcCCCCEEeccC-CCHHHHHHHHhcccH
Confidence            8999999999999999999999999999999999999999999999999999999999 679999999987653