Citrus Sinensis ID: 046488

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480
Protein Sequence
MRKPNVLMKLGSFRGVHTSIFILGTFALLISIATLSKFYSIRSLLVADAFCNYNVDLKSEGRNGSQVIRGTVQIVMEKIRKEMSDLRDLPMDSSSPASLLRHSAFLADILGLLESVQEYLPLNEGIGYWHNSEIKAVHPLLKPKQQSDEPADYFLIEEIRKYVKVKPNRLGKQNFMGANGTFNSIGHTCFSMKKELEEYMDYDVGEICNDDWKLAQKLMVHGCDPLPRRRCFSRAPQLYSRPFYINESMWKLPDNRNVRWSQYRCKNFTCLASNATHKGFFKCADCFNLTDHEMPRWIKNVDIDPITNLTADFLIPEVLDIKPGEIRIGLDFSIGTGTFAARMREFNVTLVSAIINLGAPFNEMIALRGLVPLYITINQRVPFFDNTLDLIHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDSFFCAKEDMNDYLEVFKMLKYKKHKWVVVPKRDKDDREVFFSAVLEKPPRPFRR
Secondary Structure (PSIPRED)
cccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccHHHHHcHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHccHHHHHHHccccccccccccccccccccccccccccccccccccHHHHHHHHcccccccccccccccccccccccccccccHHHHHHHcccccccccccHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccHHcccccccccEEcccccccccccccccccccccccccccHHHccHHHHHcccccccEEEEEEcccccHHHHHHHHcccEEEEEEccccccHHHHHHHcccccEEEEcccccccccccccEEEEccccccccccccHHHHHHHHHHccccccEEEEEccccccccHHHHHHHHHHHHcccccEEEEEccccccccEEEEEHHccccccccc
Secondary Structure Prediction (SSPRO)
cccccEEEEEccEccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccEcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccHHHHHHHHcccccccccccccccccccccHHHHHHHcHHHHHHHcccccccccccHHHHHHHHHHcccccccccccccccccccccccccccccccccccccEEEccccccccHHccccccccccEEEcccEEcEccccccccccccccccccccHHHHHHHHcccccccEEEEEEcccHHHHHHHHHHHccEEEEEccccccHHHHHHHHHccccEEEEEEccccccccccEEEEEcHHcccccccccccEEEEEEHHHEcccccEEEEccccccHHHHHHHHHHHHHccccEEEEEEcccccccccEEEEEEEEccccccccc
Coil and Loop (DISEMBL)
mrkpnvlmklgsfrgvhtSIFILGTFALLISIATLSKFYSIRSLLVADAFCNYNvdlksegrngsqviRGTVQIVMEKIRKEMSdlrdlpmdssspasllRHSAFLADILGLLESVQeylplnegigywhnseikavhpllkpkqqsdepadYFLIEEIRKYVKvkpnrlgkqnfmgangtfnsigHTCFSMKKELEEYmdydvgeiCNDDWKLAQKLMvhgcdplprrrcfsrapqlysrpfyinesmwklpdnrnvrwsqyrcknftclasnathkgffkcadcfnltdhemprwiknvdidpitnltadflipevldikpgeirigldfsigtGTFAARMREFNVTLVSAIINLGAPFNEMIALrglvplyitinqrvpffdntldLIHTTRFLDGWIDFVLLDFILYdwdrvlrpggllwiDSFFCAKEDMNDYLEVFKMLKykkhkwvvvpkrdkddrEVFFSAVlekpprpfrr
Flexible Loop (DISEMBL)
MRKPNVLMKLGSFRGVHTSIFILGTFALLISIATLSKFYSIRSLLVADAFCNYNVDlksegrngsqvirgtVQIVMEKIRKEMSDLRDLPMDSSSPASLLRHSAFLADILGLLESVQEYLPLNEGIGYWHNSEIKAVHPLLKPKQQSDEPADYFLIEEIRKYVKVKPNRLGKQnfmgangtfnsIGHTCFSMKKELEEYMDYDVGEICNDDWKLAQKLMVHgcdplprrrcFSRAPQLYSRPFYINESMWKLPDNRNVRWSQYRCKNFTCLASNATHKGFFKCADCFNLTDHEMPRWIKNVDIDPITNLTADFLIPEVLDIKPGEIRIGLDFSIGTGTFAARMREFNVTLVSAIINLGAPFNEMIALRGLVPLYITINQRVPFFDNTLDLIHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDSFFCAKEDMNDYLEVFKMLkykkhkwvvvpkrdkddrevffsavlekpprpfrr
Low Complexity Region (SEG)
MRKPNVLMKLGSFRGVHTSIFILGTFALLISIATLSKFYSIRSLLVADAFCNYNVDLKSEGRNGSQVIRGTVQIVMEKIRKEMSDLRDLPMDSSSPASLLRHSAFLADILGLLESVQEYLPLNEGIGYWHNSEIKAVHPLLKPKQQSDEPADYFLIEEIRKYVKVKPNRLGKQNFMGANGTFNSIGHTCFSMKKELEEYMDYDVGEICNDDWKLAQKLMVHGCDPLPRRRCFSRAPQLYSRPFYINESMWKLPDNRNVRWSQYRCKNFTCLASNATHKGFFKCADCFNLTDHEMPRWIKNVDIDPITNLTADFLIPEVLDIKPGEIRIGLDFSIGTGTFAARMREFNVTLVSAIINLGAPFNEMIALRGLVPLYITINQRVPFFDNTLDLIHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDSFFCAKEDMNDYLEVFKMLKYKKHKWVVVPKRDKDDREVFFSAVLEKPPRPFRR
Disordered region (IsUnstruct)
*****VLMKLGSFRGVHTSIFILGTFALLISIATLSKFYSIRSLLVADAFCNYNVDLKSEGRNGSQVIRGTVQIVMEK********************LLRHSAFLADILGLLESVQEYLPLNEGIGYWHNSEIKAVHPLL*********ADYFLIEEIRKYVKVKPNRLGKQNFMGANGTFNSIGHTCFSMKKELEEYMDYDVGEICNDDWKLAQKLMVHGCDPLPRRRCFSRAPQLYSRPFYINESMWKLPDNRNVRWSQYRCKNFTCLASNATHKGFFKCADCFNLTDHEMPRWIKNVDIDPITNLTADFLIPEVLDIKPGEIRIGLDFSIGTGTFAARMREFNVTLVSAIINLGAPFNEMIALRGLVPLYITINQRVPFFDNTLDLIHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDSFFCAKEDMNDYLEVFKMLKYKKHKWVVVPKRDKDDREVFFSA***********
Disordered Region (DISOPRED)
***********SFRGVHTSIFILGTFALLISIATLSKFYSIRSLLVADAFCNYNVDLKSEGRNG*QVIRGTVQIVMEKIRK***********************FLADILGL*******************************************IEEIRKYVKVKPNRLG*Q*FMGANGTFNSIGHTCFSMKKELEEYMDYDVGEICNDDWKLAQKLMVHGCDPLPRRRCFSRAPQLYSRPFYINESMWKLPDNRNVRWSQYRCKNFTCLASNATHKGFFKCADCFNLTDHEMPRWIKNVDIDPITNLTADFLIPEVLDIKPGEIRIGLDFSIGTGTFAARMREFNVTLVSAIINLGAPFNEMIALRGLVPLYITINQRVPFFDNTLDLIHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDSFFCAKEDMNDYLEVFKMLKYKKHKWVVVPKRDKDDREVFFSAVLEKPPR****
Disordered Region (DISEMBL)
MRKPNVLMKLGSFRGVHTSIFILGTFALLISIATLSKFYSIRSLLVADAFCNYNVDLKSEGRNGSQVIRGTVQIVMEKIRKEMSDLRDLPMDSSSPASLLRHSAFLADILGLLESVQEYLPLNEGIGYWHNSEIKAVHPLLKPKQQSDEPADYFLIEEIRKYVKVKPNRLGKQNFMGANGTFNSIGHTCFSMKKELEEYMDYDVGEICNDDWKLAQKLMVHGCDPLPRRRCFSRAPQLYSRPFYINESMWKLPDNRNVRWSQYRCKNFTCLASNATHKGFFKCADCFNLTDHEMPRWIKNVDIDPITNLTADFLIPEVLDIKPGEIRIGLDFSIGTGTFAARMREFNVTLVSAIINLGAPFNEMIALRGLVPLYITINQRVPFFDNTLDLIHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDSFFCAKEDMNDYLEVFKMLKYKKHKWVVVPKRDKDDREVFFSAVLEKPPRPFRR
Disordered Region (DISPRO)
***PNVLMKLGSFRGVHTSIFILGTFALLISIATLSKFYSIRSLLVADAFCNYNVDLKSEGRNGSQVIRGTVQIVMEKIRKEMSDLRDLPMDSSSPASLLRHSAFLADILGLLESVQEYLPLN*******NS*I*AVHPLLK**QQSDEPADYFLIEEIRKYVKVKPNRLGKQNFMGANGTFNSIGHTCFSMKKELEEYMDYDVGEICNDDWKLAQKLMVHGCDPLPRRRCFSRAPQLYSRPFYINESMWKLPDNRNVRWSQYRCKNFTCLASNATHKGFFKCADCFNLTDHEMPRWIKNVDIDPITNLTADFLIPEVLDIKPGEIRIGLDFSIGTGTFAARMREFNVTLVSAIINLGAPFNEMIALRGLVPLYITINQRVPFFDNTLDLIHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDSFFCAKEDMNDYLEVFKMLKYKKHKWVVVPKRDKDDREVFFSAVLEKPPR****
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MRKPNVLMKLGSFRGVHTSIFILGTFALLISIATLSKFYSIRSLLVADAFCNYNVDLKSEGRNGSQVIRGTVQIVMEKIRKEMSDLRDLPMDSSSPASLLRHSAFLADILGLLESVQEYLPLNEGIGYWHNSEIKAVHPLLKPKQQSDEPADYFLIEEIRKYVKVKPNRLGKQNFMGANGTFNSIGHTCFSMKKELEEYMDYDVGEICNDDWKLAQKLMVHGCDPLPRRRCFSRAPQLYSRPFYINESMWKLPDNRNVRWSQYRCKNFTCLASNATHKGFFKCADCFNLTDHEMPRWIKNVDIDPITNLTADFLIPEVLDIKPGEIRIGLDFSIGTGTFAARMREFNVTLVSAIINLGAPFNEMIALRGLVPLYITINQRVPFFDNTLDLIHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDSFFCAKEDMNDYLEVFKMLKYKKHKWVVVPKRDKDDREVFFSAVLEKPPRPFRR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	480	2.2.26 [Sep-21-2011]
Q94II3	600	Probable methyltransferas	no	no	0.220	0.176	0.315	8e-06
Q9ZPH9	633	Probable methyltransferas	no	no	0.431	0.327	0.258	9e-06
Q9C6S7	603	Probable methyltransferas	no	no	0.220	0.175	0.289	0.0001
O80844	631	Probable methyltransferas	no	no	0.225	0.171	0.327	0.0001
Q9SZX8	633	Probable methyltransferas	no	no	0.233	0.176	0.325	0.0002
Q9C884	639	Probable methyltransferas	no	no	0.233	0.175	0.316	0.0004

>sp|Q94II3|PMTL_ARATH Probable methyltransferase PMT21 OS=Arabidopsis thaliana GN=ERD3 PE=2 SV=1

 Score = 52.4 bits (124), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 36/114 (31%), Positives = 52/114 (45%), Gaps = 8/114 (7%)

Query: 314 LIPEVLDIKPGEIRIGLDFSIGTGTFAARMREFNVTLVSAIINLGAPFNEMIALRGLVP- 372
           LIPE+ D   G IR  +D   G  ++   + +  +  VS             AL   +P 
Sbjct: 184 LIPEMKD---GTIRTAIDTGCGVASWGGDLLDRGILTVSLAPRDNHEAQVQFALERGIPA 240

Query: 373 -LYITINQRVPFFDNTLDLIHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWI 425
            L I   QR+PF  N+ D+ H +R L  W +F      L +  R+LRPGG  W+
Sbjct: 241 ILGIISTQRLPFPSNSFDMAHCSRCLIPWTEFG--GVYLLEVHRILRPGG-FWV 291

Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: -

>sp|Q9ZPH9|PMTF_ARATH Probable methyltransferase PMT15 OS=Arabidopsis thaliana GN=At4g00750 PE=1 SV=1

 Score = 52.4 bits (124), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 62/240 (25%), Positives = 92/240 (38%), Gaps = 33/240 (13%)

Query: 198 EYMDYDVGEICNDDWKLAQKLMVHGCDPLPRR----RCFSRAPQLYSRPFYINESMWKLP 253
           E+ +Y   E  N      ++ +++     P +    RC   AP  YS PF       + P
Sbjct: 102 EFSEYTPCEFVNRSLNFPRERLIYRERHCPEKHEIVRCRIPAPYGYSLPF-------RWP 154

Query: 254 DNRNVRW-SQYRCKNFTCLASNATHKGFFKCADCFNLTDHEMPRWIKNVDIDPITNLTAD 312
           ++R+V W +       T    N     + K    F       PR              AD
Sbjct: 155 ESRDVAWFANVPHTELTVEKKNQNWVRYEKDRFLFPGGGTMFPR-------------GAD 201

Query: 313 FLIPEV---LDIKPGEIRIGLDFSIGTGTFAARMREFNVTLVSAIINLGAPFNEMIALRG 369
             I E+   +++K G IR  +D   G  +F A +   N+  +S             AL  
Sbjct: 202 AYIDEIGRLINLKDGSIRTAIDTGCGVASFGAYLMSRNIVTMSFAPRDTHEAQVQFALER 261

Query: 370 LVPLYITI--NQRVPFFDNTLDLIHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDS 427
            VP  I +  + R+PF     D+ H +R L  W  +      L + DRVLRPGG  WI S
Sbjct: 262 GVPAIIGVLASIRLPFPARAFDIAHCSRCLIPWGQYN--GTYLIEVDRVLRPGG-YWILS 318

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q9C6S7|PMTK_ARATH Probable methyltransferase PMT20 OS=Arabidopsis thaliana GN=At1g31850 PE=1 SV=1

 Score = 48.5 bits (114), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/114 (28%), Positives = 51/114 (44%), Gaps = 8/114 (7%)

Query: 314 LIPEVLDIKPGEIRIGLDFSIGTGTFAARMREFNVTLVSAIINLGAPFNEMIALRGLVP- 372
           LIPE+ D   G +R  +D   G  ++   + +  +  +S             AL   +P 
Sbjct: 190 LIPEMKD---GTVRTAIDTGCGVASWGGDLLDRGILSLSLAPRDNHEAQVQFALERGIPA 246

Query: 373 -LYITINQRVPFFDNTLDLIHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWI 425
            L I   QR+PF  N  D+ H +R L  W +F      L +  R++RPGG  W+
Sbjct: 247 ILGIISTQRLPFPSNAFDMAHCSRCLIPWTEFG--GIYLLEIHRIVRPGG-FWV 297

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|O80844|PMTG_ARATH Probable methyltransferase PMT16 OS=Arabidopsis thaliana GN=At2g45750 PE=3 SV=1

 Score = 48.1 bits (113), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/113 (32%), Positives = 49/113 (43%), Gaps = 5/113 (4%)

Query: 315 IPEVLDIKPGEIRIGLDFSIGTGTFAARMREFNVTLVSAIINLGAPFNEMIALRGLVPLY 374
           I  ++D+  G IR  +D   G  +F A +   N+T +S             AL   VP  
Sbjct: 198 IGRLIDLSDGSIRTAIDTGCGVASFGAYLLSRNITTMSFAPRDTHEAQVQFALERGVPAM 257

Query: 375 ITI--NQRVPFFDNTLDLIHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWI 425
           I I    R+P+     DL H +R L  W         L + DRVLRPGG  WI
Sbjct: 258 IGIMATIRLPYPSRAFDLAHCSRCLIPWGQND--GAYLMEVDRVLRPGG-YWI 307

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q9SZX8|PMTH_ARATH Probable methyltransferase PMT17 OS=Arabidopsis thaliana GN=At4g10440 PE=3 SV=1

 Score = 47.8 bits (112), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/120 (32%), Positives = 54/120 (45%), Gaps = 8/120 (6%)

Query: 311 ADFLIPEVLDIKP---GEIRIGLDFSIGTGTFAARMREFNVTLVSAIINLGAPFNEMIAL 367
           AD  I ++  + P   G IR  +D   G  +F A + + ++  VS             AL
Sbjct: 197 ADAYIDDIARLIPLTDGGIRTAIDTGCGVASFGAYLLKRDIMAVSFAPRDTHEAQVQFAL 256

Query: 368 RGLVPLYITI--NQRVPFFDNTLDLIHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWI 425
              VP  I I  ++R+P+     DL H +R L  W  F      L + DRVLRPGG  WI
Sbjct: 257 ERGVPAIIGIMGSRRLPYPARAFDLAHCSRCLIPW--FKNDGLYLMEVDRVLRPGG-YWI 313

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q9C884|PMTI_ARATH Probable methyltransferase PMT18 OS=Arabidopsis thaliana GN=At1g33170 PE=2 SV=1

 Score = 47.0 bits (110), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 38/120 (31%), Positives = 54/120 (45%), Gaps = 8/120 (6%)

Query: 311 ADFLIPEVLDIKP---GEIRIGLDFSIGTGTFAARMREFNVTLVSAIINLGAPFNEMIAL 367
           AD  I ++  + P   G IR  +D   G  +F A + + ++  +S             AL
Sbjct: 214 ADAYIDDIARLIPLTDGAIRTAIDTGCGVASFGAYLLKRDIVAMSFAPRDTHEAQVQFAL 273

Query: 368 RGLVPLYITI--NQRVPFFDNTLDLIHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWI 425
              VP  I I  ++R+P+     DL H +R L  W  F      L + DRVLRPGG  WI
Sbjct: 274 ERGVPAIIGIMGSRRLPYPARAFDLAHCSRCLIPW--FQNDGLYLTEVDRVLRPGG-YWI 330

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	480
255541730	615	ATRAD3, putative [Ricinus communis] gi|2	0.985	0.769	0.748	0.0
147832281	641	hypothetical protein VITISV_040608 [Viti	0.914	0.684	0.756	0.0
91805559	478	hypothetical protein At4g01240 [Arabidop	0.977	0.981	0.682	0.0
116830565	479	unknown [Arabidopsis thaliana]	0.977	0.979	0.682	0.0
297810033	479	hypothetical protein ARALYDRAFT_912109 [	0.977	0.979	0.672	0.0
15234111	659	putative methyltransferase domain-contai	0.927	0.675	0.693	0.0
2191130	598	A_IG002N01.7 gene product [Arabidopsis t	0.927	0.744	0.693	0.0
297745340	393	unnamed protein product [Vitis vinifera]	0.727	0.888	0.848	0.0
224064079	323	predicted protein [Populus trichocarpa]	0.672	1.0	0.882	1e-173
302818385	335	hypothetical protein SELMODRAFT_44179 [S	0.670	0.961	0.653	1e-129

>gi|255541730|ref|XP_002511929.1| ATRAD3, putative [Ricinus communis] gi|223549109|gb|EEF50598.1| ATRAD3, putative [Ricinus communis]

 Score =  755 bits (1949), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 361/482 (74%), Positives = 419/482 (86%), Gaps = 9/482 (1%)

Query: 1   MRKPNVLMKLGSFRGV-HTSIFILGTFALLISIATLSKFYSIRSLLVADAFCN-YNVDLK 58
           M K N+ +K+G + GV H  IF+LG   LLI IATLSKFYSIRS+ ++D   N +N + +
Sbjct: 140 MGKSNISVKIGRWCGVLHRPIFMLGILTLLICIATLSKFYSIRSVFISDTLYNHFNTEHQ 199

Query: 59  SEGRNGSQVIRGTVQIVMEKIRKEMSDLRDLPMDSSSPASLLRHSAFLADILGLLESVQE 118
           S  R+    +   V  +++KI+ E+ +++D+  DS+  + L R+S FLADILGL++S+Q 
Sbjct: 200 SSVRSDEVAV--AVGDIVQKIQNEIKEIKDIRADSTLTSHLSRYSNFLADILGLIKSIQA 257

Query: 119 YLPLNEGIGYWHNSEIKAVHPLLKPKQQSDEPADYFLIEEIRKYVKVKPNRLGKQNFMGA 178
               +EG+ +  +SE   VHPLL+PK+QSDEP D+FLIEEIRKY+++KPNRLGKQNFMGA
Sbjct: 258 S---HEGV-HQQSSEFGGVHPLLRPKRQSDEPGDFFLIEEIRKYIRIKPNRLGKQNFMGA 313

Query: 179 NGTFNSIGHTCFSMKKELEEYMDYDVGEICNDDWKLAQKLMVHGCDPLPRRRCFSRAPQL 238
           NGTF SIGH CF+MKKELEEYMDYDVGEICNDDWKLAQ+LMVHGCDPLPRRRCFS+APQL
Sbjct: 314 NGTFTSIGHACFAMKKELEEYMDYDVGEICNDDWKLAQRLMVHGCDPLPRRRCFSKAPQL 373

Query: 239 YSRPFYINESMWKLPDNRNVRWSQYRCKNFTCLASNATHKGFFKCADCFNLTDHEMPRWI 298
           YS+PF INESMWKLPDNRNVRWS Y+CKNFTCLA+N+T KGFFKCADCFNLT HEMPRWI
Sbjct: 374 YSKPFPINESMWKLPDNRNVRWSHYKCKNFTCLANNSTRKGFFKCADCFNLTAHEMPRWI 433

Query: 299 KNVDIDPITNLTADFLIPEVLDIKPGEIRIGLDFSIGTGTFAARMREFNVTLVSAIINLG 358
           K+VD+DP TNLTADFLIPEVL+IKPGEIRIGLDFS+GTGTFAARMREFN+T+VSA INLG
Sbjct: 434 KHVDLDPSTNLTADFLIPEVLNIKPGEIRIGLDFSVGTGTFAARMREFNITIVSATINLG 493

Query: 359 APFNEMIALRGLVPLYITINQRVPFFDNTLDLIHTTRFLDGWIDFVLLDFILYDWDRVLR 418
           APF+EMIALRGLVPLY+TINQR+PFFDNTLDLIHTTRFLDGWIDFVLLDFILYDWDRVLR
Sbjct: 494 APFSEMIALRGLVPLYLTINQRLPFFDNTLDLIHTTRFLDGWIDFVLLDFILYDWDRVLR 553

Query: 419 PGGLLWIDSFFCAKEDMNDYLEVFKMLKYKKHKWVVVPKRDK-DDREVFFSAVLEKPPRP 477
           PGGLLWIDSFFC KED+NDYLE FKML+Y+KHKWV+VPK DK DDREVFFSAVLEKPPRP
Sbjct: 554 PGGLLWIDSFFCLKEDLNDYLESFKMLRYRKHKWVIVPKLDKDDDREVFFSAVLEKPPRP 613

Query: 478 FR 479
           FR
Sbjct: 614 FR 615

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147832281|emb|CAN73279.1| hypothetical protein VITISV_040608 [Vitis vinifera]

 Score =  712 bits (1837), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 338/447 (75%), Positives = 398/447 (89%), Gaps = 8/447 (1%)

Query: 37  KFYSIRSLLVADAFCNYNVDLKSEGRNGSQVIRGTVQIVMEKIRKEMSDLRDLPMDSSSP 96
           +FYS+RSL+V D F N +++ +S+    S+V R TV+ V++KI++E+ ++R+L M+SSS 
Sbjct: 197 RFYSVRSLMVTDTFSN-SINPESQDMTQSEV-RITVETVIQKIQQELKEMRELSMESSSS 254

Query: 97  A-----SLLRHSAFLADILGLLESVQEYLPLNEGIGYWHNSEIKAVHPLLKPKQQSDEPA 151
           +     ++L+ S  LADILG +ESVQ  LP+ EG     ++EIK +HPLLKPK QSDEP+
Sbjct: 255 SSPCSSAMLKFSVVLADILGHIESVQASLPVTEGTCQ-QSAEIKGIHPLLKPKLQSDEPS 313

Query: 152 DYFLIEEIRKYVKVKPNRLGKQNFMGANGTFNSIGHTCFSMKKELEEYMDYDVGEICNDD 211
            YFL+EEIRKYVK+KPNRLGKQNFMGANGTF SIGH CFSMKK+LE+YMDYD+G+IC DD
Sbjct: 314 SYFLVEEIRKYVKIKPNRLGKQNFMGANGTFTSIGHACFSMKKKLEDYMDYDIGDICQDD 373

Query: 212 WKLAQKLMVHGCDPLPRRRCFSRAPQLYSRPFYINESMWKLPDNRNVRWSQYRCKNFTCL 271
           WKLAQ LMVHGCDPLPRRRCF+RAPQL+S+PF INESMWKLPD+RNVRWSQYRCKNF+CL
Sbjct: 374 WKLAQLLMVHGCDPLPRRRCFARAPQLFSKPFPINESMWKLPDDRNVRWSQYRCKNFSCL 433

Query: 272 ASNATHKGFFKCADCFNLTDHEMPRWIKNVDIDPITNLTADFLIPEVLDIKPGEIRIGLD 331
           ASN+T KGFFKCADCFNL+ HEMPRWI+ +++DP +NLT+DFLIPEVLDIKPGEIRIGLD
Sbjct: 434 ASNSTGKGFFKCADCFNLSHHEMPRWIQLINLDPSSNLTSDFLIPEVLDIKPGEIRIGLD 493

Query: 332 FSIGTGTFAARMREFNVTLVSAIINLGAPFNEMIALRGLVPLYITINQRVPFFDNTLDLI 391
           FS+GTGTFAARM EFNVT+VSA INLGAPF+EMIALRGLVPLY+TINQR+PFFDNTLDLI
Sbjct: 494 FSVGTGTFAARMTEFNVTVVSATINLGAPFSEMIALRGLVPLYLTINQRLPFFDNTLDLI 553

Query: 392 HTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDSFFCAKEDMNDYLEVFKMLKYKKHK 451
           HTTRFLDGWIDFVLL+F+LYDWDRVLRPGGLLWIDSFFC KED++DYL+ F+ML+YKKHK
Sbjct: 554 HTTRFLDGWIDFVLLEFVLYDWDRVLRPGGLLWIDSFFCLKEDLDDYLDAFRMLRYKKHK 613

Query: 452 WVVVPKRDKDDREVFFSAVLEKPPRPF 478
           WVVVPK DKDDREVFFSAVLEKPPRPF
Sbjct: 614 WVVVPKLDKDDREVFFSAVLEKPPRPF 640

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|91805559|gb|ABE65508.1| hypothetical protein At4g01240 [Arabidopsis thaliana]

 Score =  683 bits (1762), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 333/488 (68%), Positives = 387/488 (79%), Gaps = 19/488 (3%)

Query: 1   MRKPNVLMKLGSFRGVHTSIFILGTFALLISIATLSKFYSIRSLLVADAFCNYNVDLKSE 60
           M K NVL K+ +F GV+  I++L   A LIS+ATL+KF  I  L  +D FCNY+     +
Sbjct: 1   MGKTNVLSKIRAFNGVNRPIYVLAGLAFLISVATLAKFNYITPLRFSDRFCNYHGSFDGD 60

Query: 61  GRNGSQVIRGTVQIVMEKIRKEMSDLRDLPMDSSSPAS--------LLRHSAFLADILGL 112
             N    +R T++  + KI +EM DL+ L  +SS+P S        + RH AFLAD+L L
Sbjct: 61  NYNIGSQMRKTIETAIFKIHQEMDDLKALEANSSTPPSSVSSASGSMFRHVAFLADVLSL 120

Query: 113 LESVQEYLPLNEGIGYWHNSEIKAVHPLLKPKQQSDEPADYFLIEEIRKYVKVKPNRLGK 172
           ++SV   LP  E           A HPL   KQQ  +P ++F+ EEI+KY+K+KPNRLGK
Sbjct: 121 VQSVHMELPSFE-------ERSVADHPL---KQQKGDPGEHFMREEIKKYIKIKPNRLGK 170

Query: 173 QNFMGANGTFNSIGHTCFSMKKELEEYMDYDVGEICNDDWKLAQKLMVHGCDPLPRRRCF 232
           QNFMGANGTF SIGH CF+MKK+LEEYMDYDVGEICNDDW+LAQKLMVHGCDPLPRRRCF
Sbjct: 171 QNFMGANGTFTSIGHACFAMKKDLEEYMDYDVGEICNDDWRLAQKLMVHGCDPLPRRRCF 230

Query: 233 SRAPQLYSRPFYINESMWKLPDNRNVRWSQYRCKNFTCLASNAT-HKGFFKCADCFNLTD 291
           SR PQLY +PF INES+WKLPDNRNVRW QY+CKNF CLASN T  KGFFKC DCFNLT 
Sbjct: 231 SRGPQLYHKPFPINESLWKLPDNRNVRWGQYKCKNFACLASNTTARKGFFKCTDCFNLTH 290

Query: 292 HEMPRWIKNVDIDPITNLTADFLIPEVLDIKPGEIRIGLDFSIGTGTFAARMREFNVTLV 351
           HE PRW+   +IDP TN TADF I EVL+IKPGEIRIGLDFSIGTGTFAARMRE NVT+V
Sbjct: 291 HESPRWLNRGEIDPETNQTADFSIAEVLEIKPGEIRIGLDFSIGTGTFAARMREQNVTIV 350

Query: 352 SAIINLGAPFNEMIALRGLVPLYITINQRVPFFDNTLDLIHTTRFLDGWIDFVLLDFILY 411
           SA INLGAPFNEMIALRGLVPLY+T+NQR+PFFD+TLD+IHTTRFLDGWID +LLDF+L+
Sbjct: 351 SATINLGAPFNEMIALRGLVPLYLTVNQRLPFFDSTLDMIHTTRFLDGWIDLILLDFVLF 410

Query: 412 DWDRVLRPGGLLWIDSFFCAKEDMNDYLEVFKMLKYKKHKWVVVPKRDKDDREVFFSAVL 471
           DWDRVLRPGGLLWID FFC KED++DY+E FK L+Y+KHKWVVVPK+DKDD+EVFFSAVL
Sbjct: 411 DWDRVLRPGGLLWIDGFFCLKEDVSDYMEAFKALRYRKHKWVVVPKKDKDDKEVFFSAVL 470

Query: 472 EKPPRPFR 479
           EKPPRPFR
Sbjct: 471 EKPPRPFR 478

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|116830565|gb|ABK28240.1| unknown [Arabidopsis thaliana]

 Score =  682 bits (1761), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 333/488 (68%), Positives = 387/488 (79%), Gaps = 19/488 (3%)

Query: 1   MRKPNVLMKLGSFRGVHTSIFILGTFALLISIATLSKFYSIRSLLVADAFCNYNVDLKSE 60
           M K NVL K+ +F GV+  I++L   A LIS+ATL+KF  I  L  +D FCNY+     +
Sbjct: 1   MGKTNVLSKIRAFNGVNRPIYVLAGLAFLISVATLAKFNYITPLRFSDRFCNYHGSFDGD 60

Query: 61  GRNGSQVIRGTVQIVMEKIRKEMSDLRDLPMDSSSPAS--------LLRHSAFLADILGL 112
             N    +R T++  + KI +EM DL+ L  +SS+P S        + RH AFLAD+L L
Sbjct: 61  NYNIGSQMRKTIETAIFKIHQEMDDLKALEANSSTPPSSVSSASGSMFRHVAFLADVLSL 120

Query: 113 LESVQEYLPLNEGIGYWHNSEIKAVHPLLKPKQQSDEPADYFLIEEIRKYVKVKPNRLGK 172
           ++SV   LP  E           A HPL   KQQ  +P ++F+ EEI+KY+K+KPNRLGK
Sbjct: 121 VQSVHMELPSFE-------ERSVADHPL---KQQKGDPGEHFMREEIKKYIKIKPNRLGK 170

Query: 173 QNFMGANGTFNSIGHTCFSMKKELEEYMDYDVGEICNDDWKLAQKLMVHGCDPLPRRRCF 232
           QNFMGANGTF SIGH CF+MKK+LEEYMDYDVGEICNDDW+LAQKLMVHGCDPLPRRRCF
Sbjct: 171 QNFMGANGTFTSIGHACFAMKKDLEEYMDYDVGEICNDDWRLAQKLMVHGCDPLPRRRCF 230

Query: 233 SRAPQLYSRPFYINESMWKLPDNRNVRWSQYRCKNFTCLASNAT-HKGFFKCADCFNLTD 291
           SR PQLY +PF INES+WKLPDNRNVRW QY+CKNF CLASN T  KGFFKC DCFNLT 
Sbjct: 231 SRGPQLYHKPFPINESLWKLPDNRNVRWGQYKCKNFACLASNTTARKGFFKCTDCFNLTH 290

Query: 292 HEMPRWIKNVDIDPITNLTADFLIPEVLDIKPGEIRIGLDFSIGTGTFAARMREFNVTLV 351
           HE PRW+   +IDP TN TADF I EVL+IKPGEIRIGLDFSIGTGTFAARMRE NVT+V
Sbjct: 291 HESPRWLNRGEIDPETNQTADFSIAEVLEIKPGEIRIGLDFSIGTGTFAARMREQNVTIV 350

Query: 352 SAIINLGAPFNEMIALRGLVPLYITINQRVPFFDNTLDLIHTTRFLDGWIDFVLLDFILY 411
           SA INLGAPFNEMIALRGLVPLY+T+NQR+PFFD+TLD+IHTTRFLDGWID +LLDF+L+
Sbjct: 351 SATINLGAPFNEMIALRGLVPLYLTVNQRLPFFDSTLDMIHTTRFLDGWIDLILLDFVLF 410

Query: 412 DWDRVLRPGGLLWIDSFFCAKEDMNDYLEVFKMLKYKKHKWVVVPKRDKDDREVFFSAVL 471
           DWDRVLRPGGLLWID FFC KED++DY+E FK L+Y+KHKWVVVPK+DKDD+EVFFSAVL
Sbjct: 411 DWDRVLRPGGLLWIDGFFCLKEDVSDYMEAFKALRYRKHKWVVVPKKDKDDKEVFFSAVL 470

Query: 472 EKPPRPFR 479
           EKPPRPFR
Sbjct: 471 EKPPRPFR 478

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297810033|ref|XP_002872900.1| hypothetical protein ARALYDRAFT_912109 [Arabidopsis lyrata subsp. lyrata] gi|297318737|gb|EFH49159.1| hypothetical protein ARALYDRAFT_912109 [Arabidopsis lyrata subsp. lyrata]

 Score =  677 bits (1746), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 329/489 (67%), Positives = 385/489 (78%), Gaps = 20/489 (4%)

Query: 1   MRKPNVLMKLGSFRGVHTSIFILGTFALLISIATLSKFYSIRSLLVADAFCNYNVDLKSE 60
           M K NVL K+ +F GV+  I++L   A LIS+ATL+KF  I  L  +D FCNY+     +
Sbjct: 1   MGKTNVLSKIRAFNGVNRPIYVLAGLAFLISVATLAKFNYITPLRFSDRFCNYHGSFDGD 60

Query: 61  GRNGSQVIRGTVQIVMEKIRKEMSDLRDLPMDSSSPAS---------LLRHSAFLADILG 111
             N    +R T++  + KI +EM DL+ L  +SSS +          + RH AFLAD+L 
Sbjct: 61  NYNIGSQMRKTIETAIFKIHQEMDDLKALEANSSSSSPSSDSSASGSMFRHVAFLADVLS 120

Query: 112 LLESVQEYLPLNEGIGYWHNSEIKAVHPLLKPKQQSDEPADYFLIEEIRKYVKVKPNRLG 171
           L++SV   LP  E           A HPL   KQQ+ +P ++F+ EEI+KY+K+KPNRLG
Sbjct: 121 LVQSVHMELPSFE-------ERFVADHPL---KQQNGDPGEHFMREEIKKYIKIKPNRLG 170

Query: 172 KQNFMGANGTFNSIGHTCFSMKKELEEYMDYDVGEICNDDWKLAQKLMVHGCDPLPRRRC 231
           KQNFMGANGTF SIGH CF+MK++LEEYMDYDVGEICNDDW+LAQKLMVHGCDPLPRRRC
Sbjct: 171 KQNFMGANGTFTSIGHACFAMKEDLEEYMDYDVGEICNDDWRLAQKLMVHGCDPLPRRRC 230

Query: 232 FSRAPQLYSRPFYINESMWKLPDNRNVRWSQYRCKNFTCLASNA-THKGFFKCADCFNLT 290
           FSR PQLY +PF INES+WKLPDNRNVRW QY+CKNF CLASN    KGFFKC DCFNLT
Sbjct: 231 FSRGPQLYHKPFPINESLWKLPDNRNVRWGQYKCKNFACLASNTIARKGFFKCTDCFNLT 290

Query: 291 DHEMPRWIKNVDIDPITNLTADFLIPEVLDIKPGEIRIGLDFSIGTGTFAARMREFNVTL 350
            HE PRW+   ++D  TN TADF I EVL+IKPGEIRIGLDFSIGTGTFAARMRE NVT+
Sbjct: 291 YHESPRWLNRGEVDLETNQTADFSIAEVLEIKPGEIRIGLDFSIGTGTFAARMREQNVTI 350

Query: 351 VSAIINLGAPFNEMIALRGLVPLYITINQRVPFFDNTLDLIHTTRFLDGWIDFVLLDFIL 410
           VSA INLGAPFNEMIALRGLVPLY+T+NQR+PFFD+TLD+IHTTRFLDGWID +LLDF+L
Sbjct: 351 VSATINLGAPFNEMIALRGLVPLYLTVNQRLPFFDSTLDMIHTTRFLDGWIDLILLDFVL 410

Query: 411 YDWDRVLRPGGLLWIDSFFCAKEDMNDYLEVFKMLKYKKHKWVVVPKRDKDDREVFFSAV 470
           YDWDRVLRPGGLLWID FFC KED++DY+E FK L+Y+KHKWVVVPK+DKDD+EVFFSAV
Sbjct: 411 YDWDRVLRPGGLLWIDGFFCLKEDLSDYMEAFKALRYRKHKWVVVPKKDKDDKEVFFSAV 470

Query: 471 LEKPPRPFR 479
           LEKPPRPFR
Sbjct: 471 LEKPPRPFR 479

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15234111|ref|NP_192033.1| putative methyltransferase domain-containing protein [Arabidopsis thaliana] gi|7267621|emb|CAB80933.1| hypothetical protein [Arabidopsis thaliana] gi|332656598|gb|AEE81998.1| putative methyltransferase domain-containing protein [Arabidopsis thaliana]

 Score =  670 bits (1728), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 322/464 (69%), Positives = 372/464 (80%), Gaps = 19/464 (4%)

Query: 25  TFALLISIATLSKFYSIRSLLVADAFCNYNVDLKSEGRNGSQVIRGTVQIVMEKIRKEMS 84
           + A LIS+ATL+KF  I  L  +D FCNY+     +  N    +R T++  + KI +EM 
Sbjct: 206 SLAFLISVATLAKFNYITPLRFSDRFCNYHGSFDGDNYNIGSQMRKTIETAIFKIHQEMD 265

Query: 85  DLRDLPMDSSSPAS--------LLRHSAFLADILGLLESVQEYLPLNEGIGYWHNSEIKA 136
           DL+ L  +SS+P S        + RH AFLAD+L L++SV   LP  E           A
Sbjct: 266 DLKALEANSSTPPSSVSSASGSMFRHVAFLADVLSLVQSVHMELPSFE-------ERSVA 318

Query: 137 VHPLLKPKQQSDEPADYFLIEEIRKYVKVKPNRLGKQNFMGANGTFNSIGHTCFSMKKEL 196
            HPL   KQQ  +P ++F+ EEI+KY+K+KPNRLGKQNFMGANGTF SIGH CF+MKK+L
Sbjct: 319 DHPL---KQQKGDPGEHFMREEIKKYIKIKPNRLGKQNFMGANGTFTSIGHACFAMKKDL 375

Query: 197 EEYMDYDVGEICNDDWKLAQKLMVHGCDPLPRRRCFSRAPQLYSRPFYINESMWKLPDNR 256
           EEYMDYDVGEICNDDW+LAQKLMVHGCDPLPRRRCFSR PQLY +PF INES+WKLPDNR
Sbjct: 376 EEYMDYDVGEICNDDWRLAQKLMVHGCDPLPRRRCFSRGPQLYHKPFPINESLWKLPDNR 435

Query: 257 NVRWSQYRCKNFTCLASNAT-HKGFFKCADCFNLTDHEMPRWIKNVDIDPITNLTADFLI 315
           NVRW QY+CKNF CLASN T  KGFFKC DCFNLT HE PRW+   +IDP TN TADF I
Sbjct: 436 NVRWGQYKCKNFACLASNTTARKGFFKCTDCFNLTHHESPRWLNRGEIDPETNQTADFSI 495

Query: 316 PEVLDIKPGEIRIGLDFSIGTGTFAARMREFNVTLVSAIINLGAPFNEMIALRGLVPLYI 375
            EVL+IKPGEIRIGLDFSIGTGTFAARMRE NVT+VSA INLGAPFNEMIALRGLVPLY+
Sbjct: 496 AEVLEIKPGEIRIGLDFSIGTGTFAARMREQNVTIVSATINLGAPFNEMIALRGLVPLYL 555

Query: 376 TINQRVPFFDNTLDLIHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDSFFCAKEDM 435
           T+NQR+PFFD+TLD+IHTTRFLDGWID +LLDF+L+DWDRVLRPGGLLWID FFC KED+
Sbjct: 556 TVNQRLPFFDSTLDMIHTTRFLDGWIDLILLDFVLFDWDRVLRPGGLLWIDGFFCLKEDV 615

Query: 436 NDYLEVFKMLKYKKHKWVVVPKRDKDDREVFFSAVLEKPPRPFR 479
           +DY+E FK L+Y+KHKWVVVPK+DKDD+EVFFSAVLEKPPRPFR
Sbjct: 616 SDYMEAFKALRYRKHKWVVVPKKDKDDKEVFFSAVLEKPPRPFR 659

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|2191130|gb|AAB61017.1| A_IG002N01.7 gene product [Arabidopsis thaliana]

 Score =  667 bits (1722), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 322/464 (69%), Positives = 372/464 (80%), Gaps = 19/464 (4%)

Query: 25  TFALLISIATLSKFYSIRSLLVADAFCNYNVDLKSEGRNGSQVIRGTVQIVMEKIRKEMS 84
           + A LIS+ATL+KF  I  L  +D FCNY+     +  N    +R T++  + KI +EM 
Sbjct: 145 SLAFLISVATLAKFNYITPLRFSDRFCNYHGSFDGDNYNIGSQMRKTIETAIFKIHQEMD 204

Query: 85  DLRDLPMDSSSPAS--------LLRHSAFLADILGLLESVQEYLPLNEGIGYWHNSEIKA 136
           DL+ L  +SS+P S        + RH AFLAD+L L++SV   LP  E           A
Sbjct: 205 DLKALEANSSTPPSSVSSASGSMFRHVAFLADVLSLVQSVHMELPSFE-------ERSVA 257

Query: 137 VHPLLKPKQQSDEPADYFLIEEIRKYVKVKPNRLGKQNFMGANGTFNSIGHTCFSMKKEL 196
            HPL   KQQ  +P ++F+ EEI+KY+K+KPNRLGKQNFMGANGTF SIGH CF+MKK+L
Sbjct: 258 DHPL---KQQKGDPGEHFMREEIKKYIKIKPNRLGKQNFMGANGTFTSIGHACFAMKKDL 314

Query: 197 EEYMDYDVGEICNDDWKLAQKLMVHGCDPLPRRRCFSRAPQLYSRPFYINESMWKLPDNR 256
           EEYMDYDVGEICNDDW+LAQKLMVHGCDPLPRRRCFSR PQLY +PF INES+WKLPDNR
Sbjct: 315 EEYMDYDVGEICNDDWRLAQKLMVHGCDPLPRRRCFSRGPQLYHKPFPINESLWKLPDNR 374

Query: 257 NVRWSQYRCKNFTCLASNAT-HKGFFKCADCFNLTDHEMPRWIKNVDIDPITNLTADFLI 315
           NVRW QY+CKNF CLASN T  KGFFKC DCFNLT HE PRW+   +IDP TN TADF I
Sbjct: 375 NVRWGQYKCKNFACLASNTTARKGFFKCTDCFNLTHHESPRWLNRGEIDPETNQTADFSI 434

Query: 316 PEVLDIKPGEIRIGLDFSIGTGTFAARMREFNVTLVSAIINLGAPFNEMIALRGLVPLYI 375
            EVL+IKPGEIRIGLDFSIGTGTFAARMRE NVT+VSA INLGAPFNEMIALRGLVPLY+
Sbjct: 435 AEVLEIKPGEIRIGLDFSIGTGTFAARMREQNVTIVSATINLGAPFNEMIALRGLVPLYL 494

Query: 376 TINQRVPFFDNTLDLIHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDSFFCAKEDM 435
           T+NQR+PFFD+TLD+IHTTRFLDGWID +LLDF+L+DWDRVLRPGGLLWID FFC KED+
Sbjct: 495 TVNQRLPFFDSTLDMIHTTRFLDGWIDLILLDFVLFDWDRVLRPGGLLWIDGFFCLKEDV 554

Query: 436 NDYLEVFKMLKYKKHKWVVVPKRDKDDREVFFSAVLEKPPRPFR 479
           +DY+E FK L+Y+KHKWVVVPK+DKDD+EVFFSAVLEKPPRPFR
Sbjct: 555 SDYMEAFKALRYRKHKWVVVPKKDKDDKEVFFSAVLEKPPRPFR 598

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297745340|emb|CBI40420.3| unnamed protein product [Vitis vinifera]

 Score =  649 bits (1673), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 296/349 (84%), Positives = 331/349 (94%)

Query: 130 HNSEIKAVHPLLKPKQQSDEPADYFLIEEIRKYVKVKPNRLGKQNFMGANGTFNSIGHTC 189
            ++EIK +HPLLKPK QSDEP+ YFL+EEIRKYVK+KPNRLGKQNFMGANGTF SIGH C
Sbjct: 44  QSAEIKGIHPLLKPKLQSDEPSSYFLVEEIRKYVKIKPNRLGKQNFMGANGTFTSIGHAC 103

Query: 190 FSMKKELEEYMDYDVGEICNDDWKLAQKLMVHGCDPLPRRRCFSRAPQLYSRPFYINESM 249
           FSMKK+LE+YMDYD+G+IC DDWKLAQ LMVHGCDPLPRRRCF+RAPQL+S+PF INESM
Sbjct: 104 FSMKKKLEDYMDYDIGDICQDDWKLAQLLMVHGCDPLPRRRCFARAPQLFSKPFPINESM 163

Query: 250 WKLPDNRNVRWSQYRCKNFTCLASNATHKGFFKCADCFNLTDHEMPRWIKNVDIDPITNL 309
           WKLPD+RNVRWSQYRCKNF+CLASN+T KGFFKCADCFNL+ HEMPRWI+ +++DP +NL
Sbjct: 164 WKLPDDRNVRWSQYRCKNFSCLASNSTGKGFFKCADCFNLSHHEMPRWIQLINLDPSSNL 223

Query: 310 TADFLIPEVLDIKPGEIRIGLDFSIGTGTFAARMREFNVTLVSAIINLGAPFNEMIALRG 369
           T+DFLIPEVLDIKPGEIRIGLDFS+GTGTFAARM EFNVT+VSA INLGAPF+EMIALRG
Sbjct: 224 TSDFLIPEVLDIKPGEIRIGLDFSVGTGTFAARMTEFNVTVVSATINLGAPFSEMIALRG 283

Query: 370 LVPLYITINQRVPFFDNTLDLIHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDSFF 429
           LVPLY+TINQR+PFFDNTLDLIHTTRFLDGWIDFVLL+F+LYDWDRVLRPGGLLWIDSFF
Sbjct: 284 LVPLYLTINQRLPFFDNTLDLIHTTRFLDGWIDFVLLEFVLYDWDRVLRPGGLLWIDSFF 343

Query: 430 CAKEDMNDYLEVFKMLKYKKHKWVVVPKRDKDDREVFFSAVLEKPPRPF 478
           C KED++DYL+ F+ML+YKKHKWVVVPK DKDDREVFFSAVLEKPPRPF
Sbjct: 344 CLKEDLDDYLDAFRMLRYKKHKWVVVPKLDKDDREVFFSAVLEKPPRPF 392

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224064079|ref|XP_002301381.1| predicted protein [Populus trichocarpa] gi|222843107|gb|EEE80654.1| predicted protein [Populus trichocarpa]

 Score =  613 bits (1581), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 285/323 (88%), Positives = 305/323 (94%)

Query: 154 FLIEEIRKYVKVKPNRLGKQNFMGANGTFNSIGHTCFSMKKELEEYMDYDVGEICNDDWK 213
           FLIEEIRKYV++KPNRLGKQNFMGANGTF SIGH CF+MKK++EEYMDYDVGEIC DDWK
Sbjct: 1   FLIEEIRKYVRIKPNRLGKQNFMGANGTFTSIGHACFAMKKDIEEYMDYDVGEICKDDWK 60

Query: 214 LAQKLMVHGCDPLPRRRCFSRAPQLYSRPFYINESMWKLPDNRNVRWSQYRCKNFTCLAS 273
           LAQKLMVHGCDPLPRRRCF+RAPQLYS+PF INESMWKLPDNRNVRWSQYRCKNFTCLA 
Sbjct: 61  LAQKLMVHGCDPLPRRRCFARAPQLYSKPFPINESMWKLPDNRNVRWSQYRCKNFTCLAG 120

Query: 274 NATHKGFFKCADCFNLTDHEMPRWIKNVDIDPITNLTADFLIPEVLDIKPGEIRIGLDFS 333
           N T KGFFKCADCFNL+DHE+PRWIK V  DP  NLTADFLIPEVL+IK GEIRIGLDFS
Sbjct: 121 NTTRKGFFKCADCFNLSDHELPRWIKQVISDPEMNLTADFLIPEVLNIKLGEIRIGLDFS 180

Query: 334 IGTGTFAARMREFNVTLVSAIINLGAPFNEMIALRGLVPLYITINQRVPFFDNTLDLIHT 393
           +GTGTFAARMREFNVT+VSA INLGAPFNEMIALRGLVPLY+TINQR+PFFDNTLDL+HT
Sbjct: 181 VGTGTFAARMREFNVTIVSATINLGAPFNEMIALRGLVPLYLTINQRLPFFDNTLDLLHT 240

Query: 394 TRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDSFFCAKEDMNDYLEVFKMLKYKKHKWV 453
           TRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDSFFC KED++DYLE FKML Y++HKW+
Sbjct: 241 TRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDSFFCLKEDLDDYLEAFKMLSYRRHKWI 300

Query: 454 VVPKRDKDDREVFFSAVLEKPPR 476
           VVPK DKDDREVFFSAVLEKPPR
Sbjct: 301 VVPKLDKDDREVFFSAVLEKPPR 323

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302818385|ref|XP_002990866.1| hypothetical protein SELMODRAFT_44179 [Selaginella moellendorffii] gi|300141427|gb|EFJ08139.1| hypothetical protein SELMODRAFT_44179 [Selaginella moellendorffii]

 Score =  468 bits (1204), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 221/338 (65%), Positives = 270/338 (79%), Gaps = 16/338 (4%)

Query: 154 FLIEEIRKYVKVKPNRL--GKQNFMGANGTFNSIGHTCF-SMKKELEEYMDYDVGEICND 210
           F +EEI KY+  + +RL  GK+NFMG N TF S+G  C  SMK ELE+YMDYDVG+ C D
Sbjct: 1   FGVEEINKYLLPREHRLEPGKKNFMGGNATFPSVGLACATSMKAELEQYMDYDVGDYCPD 60

Query: 211 DWKLAQKLMVHGCDPLPRRRCFSRAPQLYSRPFYINESMWKLPDNRNVRWSQYRCKNFTC 270
           DW L QKL+VHGCDPLPRRRC +RAPQLY +P   NES+W++PD+RNVRW+ Y+CKNF C
Sbjct: 61  DWTLGQKLLVHGCDPLPRRRCLARAPQLYQKPLAANESLWRIPDSRNVRWNNYKCKNFEC 120

Query: 271 LASN---------ATHKGFFKCADCFNLTDHEMPRWIKNVDIDPITNLTADFLIPEVLDI 321
           LA N         ++ KGF+KC++CF+L  +E  RW   V ++  T+  ADF I +VL +
Sbjct: 121 LAGNKPKNGTSNSSSSKGFYKCSECFDLLGYEKSRW---VTVNLSTSTAADFRISDVLAL 177

Query: 322 KP-GEIRIGLDFSIGTGTFAARMREFNVTLVSAIINLGAPFNEMIALRGLVPLYITINQR 380
           KP GEIRIG+DFS+GTGTFAARM+E NVT++SA +NLGAPFNEMIALRGLVPLY+++NQR
Sbjct: 178 KPAGEIRIGVDFSVGTGTFAARMKEHNVTIISATLNLGAPFNEMIALRGLVPLYLSVNQR 237

Query: 381 VPFFDNTLDLIHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDSFFCAKEDMNDYLE 440
           +PFFDNTLD++HTT FLDGWID +LLD+IL+DWDRVLRPGGLLWID FFC K+D++DYL 
Sbjct: 238 LPFFDNTLDILHTTLFLDGWIDHILLDYILFDWDRVLRPGGLLWIDRFFCPKQDIDDYLY 297

Query: 441 VFKMLKYKKHKWVVVPKRDKDDREVFFSAVLEKPPRPF 478
            F  L YKKH WVV PK DKD +E+FFSAVLEKPPRPF
Sbjct: 298 FFLQLHYKKHLWVVTPKLDKDGKELFFSAVLEKPPRPF 335

Source: Selaginella moellendorffii

Species: Selaginella moellendorffii

Genus: Selaginella

Family: Selaginellaceae

Order: Selaginellales

Class: Isoetopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	480
TAIR|locus:2125028	659	AT4G01240 [Arabidopsis thalian	0.925	0.673	0.698	1.2e-177
TAIR|locus:2079812	463	AT3G05390 [Arabidopsis thalian	0.904	0.937	0.504	5.1e-122
TAIR|locus:2164491	414	AT5G40830 [Arabidopsis thalian	0.637	0.739	0.419	4.1e-65
TAIR|locus:2086543	410	AT3G27230 [Arabidopsis thalian	0.633	0.741	0.407	4.3e-61
TAIR|locus:2019312	378	AT1G29790 [Arabidopsis thalian	0.439	0.558	0.376	2.6e-55
TAIR|locus:2117728	633	AT4G00750 [Arabidopsis thalian	0.433	0.328	0.263	0.00023
TAIR|locus:2134756	600	ERD3 "early-responsive to dehy	0.429	0.343	0.252	0.00046
TAIR|locus:2034522	603	AT1G31850 [Arabidopsis thalian	0.425	0.338	0.25	0.00076

TAIR|locus:2125028 AT4G01240 [Arabidopsis thaliana (taxid:3702)]

 Score = 1725 (612.3 bits), Expect = 1.2e-177, P = 1.2e-177
 Identities = 325/465 (69%), Positives = 375/465 (80%)

Query:    25 TFALLISIATLSKFYSIRSLLVADAFCNYNVDLKSEGRN-GSQVIRGTVQIVMEKIRKEM 83
             + A LIS+ATL+KF  I  L  +D FCNY+     +  N GSQ+ R T++  + KI +EM
Sbjct:   206 SLAFLISVATLAKFNYITPLRFSDRFCNYHGSFDGDNYNIGSQM-RKTIETAIFKIHQEM 264

Query:    84 SDLRDLPMDSSSP--------ASLLRHSAFLADILGLLESVQEYLPLNEGIGYWHNSEIK 135
              DL+ L  +SS+P         S+ RH AFLAD+L L++SV   LP  E           
Sbjct:   265 DDLKALEANSSTPPSSVSSASGSMFRHVAFLADVLSLVQSVHMELPSFE-------ERSV 317

Query:   136 AVHPLLKPKQQSDEPADYFLIEEIRKYVKVKPNRLGKQNFMGANGTFNSIGHTCFSMKKE 195
             A HPL   KQQ  +P ++F+ EEI+KY+K+KPNRLGKQNFMGANGTF SIGH CF+MKK+
Sbjct:   318 ADHPL---KQQKGDPGEHFMREEIKKYIKIKPNRLGKQNFMGANGTFTSIGHACFAMKKD 374

Query:   196 LEEYMDYDVGEICNDDWKLAQKLMVHGCDPLPRRRCFSRAPQLYSRPFYINESMWKLPDN 255
             LEEYMDYDVGEICNDDW+LAQKLMVHGCDPLPRRRCFSR PQLY +PF INES+WKLPDN
Sbjct:   375 LEEYMDYDVGEICNDDWRLAQKLMVHGCDPLPRRRCFSRGPQLYHKPFPINESLWKLPDN 434

Query:   256 RNVRWSQYRCKNFTCLASNAT-HKGFFKCADCFNLTDHEMPRWIKNVDIDPITNLTADFL 314
             RNVRW QY+CKNF CLASN T  KGFFKC DCFNLT HE PRW+   +IDP TN TADF 
Sbjct:   435 RNVRWGQYKCKNFACLASNTTARKGFFKCTDCFNLTHHESPRWLNRGEIDPETNQTADFS 494

Query:   315 IPEVLDIKPGEIRIGLDFSIGTGTFAARMREFNVTLVSAIINLGAPFNEMIALRGLVPLY 374
             I EVL+IKPGEIRIGLDFSIGTGTFAARMRE NVT+VSA INLGAPFNEMIALRGLVPLY
Sbjct:   495 IAEVLEIKPGEIRIGLDFSIGTGTFAARMREQNVTIVSATINLGAPFNEMIALRGLVPLY 554

Query:   375 ITINQRVPFFDNTLDLIHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDSFFCAKED 434
             +T+NQR+PFFD+TLD+IHTTRFLDGWID +LLDF+L+DWDRVLRPGGLLWID FFC KED
Sbjct:   555 LTVNQRLPFFDSTLDMIHTTRFLDGWIDLILLDFVLFDWDRVLRPGGLLWIDGFFCLKED 614

Query:   435 MNDYLEVFKMLKYKKHKWVVVPKRDKDDREVFFSAVLEKPPRPFR 479
             ++DY+E FK L+Y+KHKWVVVPK+DKDD+EVFFSAVLEKPPRPFR
Sbjct:   615 VSDYMEAFKALRYRKHKWVVVPKKDKDDKEVFFSAVLEKPPRPFR 659

GO:0005634 "nucleus" evidence=ISM

GO:0008168 "methyltransferase activity" evidence=IEA

TAIR|locus:2079812 AT3G05390 [Arabidopsis thaliana (taxid:3702)]

 Score = 1200 (427.5 bits), Expect = 5.1e-122, P = 5.1e-122
 Identities = 233/462 (50%), Positives = 315/462 (68%)

Query:    22 ILGTFALLISIATLSKFYSIRSLLVADAFCN--YNV-DLKSEGRNGSQVIRGTVQIVMEK 78
             ILG   + +S++ L +F+S+   L  +  CN  Y + ++ SEG +  + +   V  V+EK
Sbjct:    21 ILGLLVITVSLSCLYRFHSVGYFLQNEDTCNNIYTIKEVSSEGFD-LKALHDRVDEVLEK 79

Query:    79 IRKEMSDLRDL--PMDSSSPASLLRHSAFLADILGLLESVQEYLPLNEGIGYWHNSEIKA 136
             +      L      M+ S   S      FL D     E ++ +   + G+      +I+ 
Sbjct:    80 MDNLYEKLEKTVKDMEKSKDGSKKEMKKFLED-----EVMKPFYYAHIGL-----RQIRL 129

Query:   137 VHPL-LKPKQQSDEPA-DYFLIEEIRKYVKVKPNRLGKQNFMGANGTFNSIGHTCFSMKK 194
               P  ++   + +EP  + FLIEEIR+Y+  K NR+GK N  G    +N+IGH C  MK 
Sbjct:   130 PKPEGIRNSTEKEEPLINKFLIEEIRQYITPKENRVGKINMFGTERVYNTIGHACALMKM 189

Query:   195 ELEEYMDYDVGEICNDDWKLAQKLMVHGCDPLPRRRCFSRAPQLYSRPFYINESMWKLPD 254
             ELE+YMDYDVG  C+DDW LAQKLM++GCDPLPRRRC +RA   Y +P+ INES+WKLPD
Sbjct:   190 ELEKYMDYDVGAYCDDDWNLAQKLMLNGCDPLPRRRCLTRASMTYQKPYPINESLWKLPD 249

Query:   255 NRNVRWSQYRCKNFTCLASNATHKGFFKCADCFNLTDHEMPRWIKNVDIDPITNLTADFL 314
             +RNVRW  Y+C+NF CL+S    +G+ KC+ CF + + E  +W+KN      ++L  DF+
Sbjct:   250 DRNVRWGNYQCRNFACLSSKNPKRGYTKCSGCFEM-EKEKDKWVKN------SSLLVDFM 302

Query:   315 IPEVLDIKPGEIRIGLDFSIGTGTFAARMREFNVTLVSAIINLGAPFNEMIALRGLVPLY 374
             I +VL +KP EIRIGLD+ +GTGTFAARMRE NVT+V+  +NLGAPFNEMIALRGL+PLY
Sbjct:   303 IEDVLRVKPSEIRIGLDYGVGTGTFAARMREKNVTIVTTALNLGAPFNEMIALRGLIPLY 362

Query:   375 ITINQRVPFFDNTLDLIHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDSFFCAKED 434
             I++NQR+PFFDNT+D+IHTT  +DGWID +L+DF+LYDWDRVLRPGGLLWID FFC K+D
Sbjct:   363 ISLNQRLPFFDNTMDMIHTTGLMDGWIDLLLMDFVLYDWDRVLRPGGLLWIDRFFCKKKD 422

Query:   435 MNDYLEVFKMLKYKKHKWVVVPKRDKDDREVFFSAVLEKPPR 476
             ++DY+ +F   +YKKHKW + PK  KD  EV+ SA+LEKPPR
Sbjct:   423 LDDYMYMFLQFRYKKHKWAISPK-SKD--EVYLSALLEKPPR 461

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0008168 "methyltransferase activity" evidence=IEA

TAIR|locus:2164491 AT5G40830 [Arabidopsis thaliana (taxid:3702)]

 Score = 663 (238.4 bits), Expect = 4.1e-65, P = 4.1e-65
 Identities = 136/324 (41%), Positives = 196/324 (60%)

Query:   157 EEIRKYVKVKPNRLGKQNFMGANGTFNSIGHTCFSMKKELEEYMDYDVGEICNDDWKLAQ 216
             +E++ +++     LGK +  G      S+GH+C      L +YM Y+V E C DDW LAQ
Sbjct:   104 QELKLFLQQHQLPLGKDSRTGITQMVASVGHSCEMSLDLLSQYMSYNVFEKCPDDWSLAQ 163

Query:   217 KLMVHGCDPLPRRRCFSRAPQLYSRPFYINESMWKLPDNRNVRWSQYRCKNFTCLASNAT 276
             KL++  C+PLPRRRC ++         +  +S+W+   N +V WS   CK+F CL     
Sbjct:   164 KLILRACEPLPRRRCLAKTVHKPGLALF-PDSLWRPVGNSSVNWSGLGCKSFECLKGKKL 222

Query:   277 HKGFFKCADCFNL-TDHEMPRWIKNVDIDPITNLTADFLIPEVLDIKPGEIRIGLDFSIG 335
              +    C  CF+L T HE  R++K        N   DFLI +VLD+  G+IRIG D S G
Sbjct:   223 SRD---CVGCFDLATSHEKDRFVK-------VNGKTDFLIDDVLDLGDGKIRIGFDISSG 272

Query:   336 TGTFAARMREFNVTLVSAIINLGAPFNEMIALRGLVPLYITINQRVPFFDNTLDLIHTTR 395
             +GTFAARM E NV ++S  +N+ APF+E IA RG+ PL+++++QR+PF+DN  DLIH + 
Sbjct:   273 SGTFAARMAEKNVNIISNTLNIDAPFSEFIAARGIFPLFMSLDQRLPFYDNVFDLIHASN 332

Query:   396 FLDGWIDFV--LLDFILYDWDRVLRPGGLLWIDSFFCAKEDMNDYL-EVFKMLKYKKHKW 452
              LD  +      L+F+++D DR+L+PGGL W+D+F+C  ++    L  + +   YKK KW
Sbjct:   333 GLDLAVSNKPEKLEFLMFDLDRILKPGGLFWLDNFYCGNDEKKRVLTRLIERFGYKKLKW 392

Query:   453 VVVPKRDKDDREVFFSAVLEKPPR 476
             VV    +K D EVF SAVL+KP R
Sbjct:   393 VV---GEKTDAEVFLSAVLQKPAR 413

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0008168 "methyltransferase activity" evidence=IEA

TAIR|locus:2086543 AT3G27230 [Arabidopsis thaliana (taxid:3702)]

 Score = 625 (225.1 bits), Expect = 4.3e-61, P = 4.3e-61
 Identities = 133/326 (40%), Positives = 193/326 (59%)

Query:   155 LIEEIRKYVKVKPNRLGKQNFMGANGTFNSIGHTCFSMKKELEEYMDYDVGEICNDDWKL 214
             ++ E++ +++     LGK +  G     +S+GH+C      L +YM Y V + C DDW L
Sbjct:   102 IVPELKLFLQRHQLPLGKDSRTGITEMVSSVGHSCGKSTDLLSQYMSYKVFDRCPDDWSL 161

Query:   215 AQKLMVHGCDPLPRRRCFSRAPQ---LYSRPFYINESMWKLPDNRNVRWSQYRCKNFTCL 271
              QKL++  C+PLPRRRC ++  Q   L   P    +S+W+   N++V WS   CK+F CL
Sbjct:   162 GQKLILRACEPLPRRRCLAKTVQKQDLSKSP----DSLWRSVSNKSVNWSGLGCKSFDCL 217

Query:   272 ASNATHKGFFKCADCFNLTDHEMPRWIKNVDIDPITNLTADFLIPEVLDIKPGEIRIGLD 331
                   K   +C  CF+L   E  R++K            DFLI +VL +  G+IRIG D
Sbjct:   218 KGKKLSK---ECVGCFDL-GVEKDRFVK-------VKGKNDFLIDDVLGLGSGKIRIGFD 266

Query:   332 FSIGTGTFAARMREFNVTLVSAIINLGAPFNEMIALRGLVPLYITINQRVPFFDNTLDLI 391
              S G+GTFAARM E NVT+++  +N GAPF+E IA RGL PL+++++ R PF DN  DLI
Sbjct:   267 ISGGSGTFAARMAEKNVTVITNTLNNGAPFSEFIAARGLFPLFLSLDHRFPFLDNVFDLI 326

Query:   392 HTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDSFFCAKEDMNDYL-EVFKMLKYKKH 450
             H +  LD       L+F+++D DRVL+P GL W+D+F+CA ++    L  + +   YKK 
Sbjct:   327 HASSGLDVEGKAEKLEFLMFDLDRVLKPRGLFWLDNFYCANDEKKKELTRMIERFGYKKL 386

Query:   451 KWVVVPKRDKDDREVFFSAVLEKPPR 476
             KWV+    +K D +V+ SAVL+KP R
Sbjct:   387 KWVI---GEKADAQVYLSAVLQKPVR 409

GO:0005794 "Golgi apparatus" evidence=ISM;IDA

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0005768 "endosome" evidence=IDA

GO:0005802 "trans-Golgi network" evidence=IDA

TAIR|locus:2019312 AT1G29790 [Arabidopsis thaliana (taxid:3702)]

 Score = 405 (147.6 bits), Expect = 2.6e-55, Sum P(2) = 2.6e-55
 Identities = 84/223 (37%), Positives = 130/223 (58%)

Query:   253 PDNRNVRWSQYRCKNFTCLASNATHKGFFKCADCFNLTDHEMPRWIKNVDIDPITNLTAD 312
             P++ NV WS Y CK+F CL +  +  GF    +    +  +   +   +D+ PI+ L   
Sbjct:   164 PES-NVLWSYYSCKSFDCLITKFSDLGFDLSLE---KSKSQFSAYKSELDL-PISQLL-- 216

Query:   313 FLIPEVLDIKPGEIRIGLDFSIGTGTFAARMREFNVTLVSAIINLGAPFNEMIALRGLVP 372
                 ++       +R+G+D   GTG+FAA M+  NVT+++  +N  AP++E +A+RGLVP
Sbjct:   217 ----QIAKSANSVLRLGIDVGGGTGSFAAAMKARNVTVLTTTMNFNAPYSEAVAMRGLVP 272

Query:   373 LYITINQRVPFFDNTLDLIHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDSFFCAK 432
             L++ + QR+P FD  +DL+   R ++ WI   +++F  +D DR+LR GG LW+D FF  K
Sbjct:   273 LHVPLQQRLPVFDGVVDLVRCGRAVNRWIPVTVMEFFFFDLDRILRGGGYLWLDRFFSKK 332

Query:   433 EDM-NDYLEVFKMLKYKKHKWVVVPKRDKDDREVFFSAVLEKP 474
              D+ N Y  +   L YKK KW V  K D    EVF +A+L+KP
Sbjct:   333 VDLENVYAPMIGKLGYKKVKWAVANKADSKHGEVFLTALLQKP 375

GO:0005794 "Golgi apparatus" evidence=ISM;IDA

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005768 "endosome" evidence=IDA

GO:0005802 "trans-Golgi network" evidence=IDA

TAIR|locus:2117728 AT4G00750 [Arabidopsis thaliana (taxid:3702)]

 Score = 124 (48.7 bits), Expect = 0.00023, P = 0.00023
 Identities = 62/235 (26%), Positives = 91/235 (38%)

Query:   198 EYMDYDVGEICNDDWKLAQKLMVHGCDPLPRR----RCFSRAPQLYSRPFYINESMWKLP 253
             E+ +Y   E  N      ++ +++     P +    RC   AP  YS PF      W  P
Sbjct:   102 EFSEYTPCEFVNRSLNFPRERLIYRERHCPEKHEIVRCRIPAPYGYSLPF-----RW--P 154

Query:   254 DNRNVRW-SQYRCKNFTCLASNATHKGFFKCADCFNLTDHEMPRWIKNVDIDPITNLTAD 312
             ++R+V W +       T    N     + K    F       PR   +  ID I  L   
Sbjct:   155 ESRDVAWFANVPHTELTVEKKNQNWVRYEKDRFLFPGGGTMFPRGA-DAYIDEIGRL--- 210

Query:   313 FLIPEVLDIKPGEIRIGLDFSIGTGTFAARMREFNVTLVSAIINLGAPFNEMIALRGLVP 372
                   +++K G IR  +D   G  +F A +   N+  +S             AL   VP
Sbjct:   211 ------INLKDGSIRTAIDTGCGVASFGAYLMSRNIVTMSFAPRDTHEAQVQFALERGVP 264

Query:   373 LYITI--NQRVPFFDNTLDLIHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWI 425
               I +  + R+PF     D+ H +R L  W  +      L + DRVLRPGG  WI
Sbjct:   265 AIIGVLASIRLPFPARAFDIAHCSRCLIPWGQYN--GTYLIEVDRVLRPGGY-WI 316

GO:0005634 "nucleus" evidence=ISM

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0005768 "endosome" evidence=IDA

GO:0005802 "trans-Golgi network" evidence=IDA

TAIR|locus:2134756 ERD3 "early-responsive to dehydration 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 121 (47.7 bits), Expect = 0.00046, P = 0.00046
 Identities = 60/238 (25%), Positives = 95/238 (39%)

Query:   198 EYMDYDVGEICNDD--WKL--AQKL--MVHGCDPL-PRRRCFSRAPQLYSRPFYINESMW 250
             +Y DY     C D   WK     +L  M   C P+  R++C    P  Y  P       W
Sbjct:    76 DYQDYTP---CTDPRKWKKYGTHRLTFMERHCPPVFDRKQCLVPPPDGYKPPI-----RW 127

Query:   251 KLPDNRNVRWSQYRCKNFTCLASNATHKGFF-KCADCFNLTDHEMPRWIKNVDIDPITNL 309
               P +++  W  YR   +  +    +++ +  K  + F          +    +    +L
Sbjct:   128 --PKSKDECW--YRNVPYDWINKQKSNQNWLRKEGEKFIFPGGGT---MFPHGVSAYVDL 180

Query:   310 TADFLIPEVLDIKPGEIRIGLDFSIGTGTFAARMREFNVTLVSAIINLGAPFNEMIALRG 369
               D LIPE+ D   G IR  +D   G  ++   + +  +  VS             AL  
Sbjct:   181 MQD-LIPEMKD---GTIRTAIDTGCGVASWGGDLLDRGILTVSLAPRDNHEAQVQFALER 236

Query:   370 LVPLYITI--NQRVPFFDNTLDLIHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWI 425
              +P  + I   QR+PF  N+ D+ H +R L  W +F      L +  R+LRPGG  W+
Sbjct:   237 GIPAILGIISTQRLPFPSNSFDMAHCSRCLIPWTEFG--GVYLLEVHRILRPGGF-WV 291

GO:0005794 "Golgi apparatus" evidence=ISM;IDA

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0009269 "response to desiccation" evidence=RCA

GO:0009409 "response to cold" evidence=RCA

GO:0009651 "response to salt stress" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0005768 "endosome" evidence=IDA

GO:0005802 "trans-Golgi network" evidence=IDA

TAIR|locus:2034522 AT1G31850 [Arabidopsis thaliana (taxid:3702)]

 Score = 119 (46.9 bits), Expect = 0.00076, P = 0.00076
 Identities = 60/240 (25%), Positives = 95/240 (39%)

Query:   198 EYMDYDVGEICNDD--WKL--AQKL--MVHGCDPL-PRRRCFSRAPQLYSRPFYINESMW 250
             E+ DY     C D   WK     +L  +   C P+  +  C    P  Y  P       W
Sbjct:    82 EFQDYTP---CTDPKRWKKYGVHRLSFLERHCPPVYEKNECLIPPPDGYKPPI-----RW 133

Query:   251 KLPDNRNVRWSQYRCKNFTCLASNATHKGFFKC-ADCFNLTDHE--MPRWIKNVDIDPIT 307
               P +R   W  YR   +  +    +++ + K   D F+        PR + +  +D   
Sbjct:   134 --PKSREQCW--YRNVPYDWINKQKSNQHWLKKEGDKFHFPGGGTMFPRGVSHY-VD--- 185

Query:   308 NLTADFLIPEVLDIKPGEIRIGLDFSIGTGTFAARMREFNVTLVSAIINLGAPFNEMIAL 367
              L  D LIPE+ D   G +R  +D   G  ++   + +  +  +S             AL
Sbjct:   186 -LMQD-LIPEMKD---GTVRTAIDTGCGVASWGGDLLDRGILSLSLAPRDNHEAQVQFAL 240

Query:   368 RGLVPLYITI--NQRVPFFDNTLDLIHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWI 425
                +P  + I   QR+PF  N  D+ H +R L  W +F      L +  R++RPGG  W+
Sbjct:   241 ERGIPAILGIISTQRLPFPSNAFDMAHCSRCLIPWTEFG--GIYLLEIHRIVRPGGF-WV 297


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.325   0.141   0.443    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      480       480   0.00079  119 3  11 22  0.47    33
                                                     35  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  8
  No. of states in DFA:  620 (66 KB)
  Total size of DFA:  321 KB (2163 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  44.00u 0.09s 44.09t   Elapsed:  00:00:02
  Total cpu time:  44.01u 0.09s 44.10t   Elapsed:  00:00:02
  Start:  Sat May 11 14:04:21 2013   End:  Sat May 11 14:04:23 2013

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0005768 "endosome" evidence=IDA

GO:0005802 "trans-Golgi network" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	480
pfam03141	506	pfam03141, Methyltransf_29, Putative S-adenosyl-L-	5e-04

>gnl|CDD|217386 pfam03141, Methyltransf_29, Putative S-adenosyl-L-methionine-dependent methyltransferase

 Score = 42.3 bits (100), Expect = 5e-04
 Identities = 35/113 (30%), Positives = 53/113 (46%), Gaps = 19/113 (16%)

Query: 324 GEIRIGLDFSIGTGTFAARMREFNVTLVSAIINLGAPFNEMIAL------RGLVPLYITI 377
           G +R  LD   G  +F A +   +V  +S      AP +   A       RG VP  + +
Sbjct: 116 GRVRTALDVGCGVASFGAYLLSRDVLTMSF-----APKDVHEAQVQFALERG-VPAMLGV 169

Query: 378 --NQRVPFFDNTLDLIHTTRFLDGWIDFVLLDFI-LYDWDRVLRPGGLLWIDS 427
              +R+P+   + D+ H +R L   I +   D I L + DRVLRPGG  ++ S
Sbjct: 170 LGTRRLPYPSRSFDMAHCSRCL---IPWHANDGILLLEVDRVLRPGG-YFVLS 218

This family is a putative S-adenosyl-L-methionine (SAM)-dependent methyltransferase. Length = 506

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	480
PF03141	506	Methyltransf_29: Putative S-adenosyl-L-methionine-	100.0
PF03141	506	Methyltransf_29: Putative S-adenosyl-L-methionine-	99.95
COG2226	238	UbiE Methylase involved in ubiquinone/menaquinone	99.71
PF08241	95	Methyltransf_11: Methyltransferase domain; InterPr	99.65
PF01209	233	Ubie_methyltran: ubiE/COQ5 methyltransferase famil	99.63
PLN02233	261	ubiquinone biosynthesis methyltransferase	99.61
PLN02244	340	tocopherol O-methyltransferase	99.53
PTZ00098	263	phosphoethanolamine N-methyltransferase; Provision	99.48
PF13489	161	Methyltransf_23: Methyltransferase domain; PDB: 3J	99.48
KOG1540	296	consensus Ubiquinone biosynthesis methyltransferas	99.46
PLN02396	322	hexaprenyldihydroxybenzoate methyltransferase	99.45
PRK14103	255	trans-aconitate 2-methyltransferase; Provisional	99.44
TIGR02752	231	MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me	99.43
PRK15068	322	tRNA mo(5)U34 methyltransferase; Provisional	99.43
PRK11036	255	putative S-adenosyl-L-methionine-dependent methylt	99.42
PRK10258	251	biotin biosynthesis protein BioC; Provisional	99.42
TIGR00452	314	methyltransferase, putative. Known examples to dat	99.41
PLN02336	475	phosphoethanolamine N-methyltransferase	99.4
PLN02490	340	MPBQ/MSBQ methyltransferase	99.39
PRK05785	226	hypothetical protein; Provisional	99.37
PRK11873	272	arsM arsenite S-adenosylmethyltransferase; Reviewe	99.36
PRK11207	197	tellurite resistance protein TehB; Provisional	99.34
TIGR00477	195	tehB tellurite resistance protein TehB. Part of a	99.3
smart00828	224	PKS_MT Methyltransferase in polyketide synthase (P	99.28
PRK08317	241	hypothetical protein; Provisional	99.28
PF02353	273	CMAS: Mycolic acid cyclopropane synthetase; InterP	99.27
TIGR03587	204	Pse_Me-ase pseudaminic acid biosynthesis-associate	99.26
TIGR02072	240	BioC biotin biosynthesis protein BioC. This enzyme	99.25
PRK15451	247	tRNA cmo(5)U34 methyltransferase; Provisional	99.24
PF12847	112	Methyltransf_18: Methyltransferase domain; PDB: 3G	99.24
PRK00216	239	ubiE ubiquinone/menaquinone biosynthesis methyltra	99.24
PF07021	193	MetW: Methionine biosynthesis protein MetW; InterP	99.23
PRK12335	287	tellurite resistance protein TehB; Provisional	99.23
COG2227	243	UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-	99.22
PRK01683	258	trans-aconitate 2-methyltransferase; Provisional	99.22
PF08003	315	Methyltransf_9: Protein of unknown function (DUF16	99.2
PRK11188	209	rrmJ 23S rRNA methyltransferase J; Provisional	99.2
TIGR01934	223	MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis	99.19
PF13847	152	Methyltransf_31: Methyltransferase domain; PDB: 3T	99.18
PF13649	101	Methyltransf_25: Methyltransferase domain; PDB: 3B	99.18
PRK11088	272	rrmA 23S rRNA methyltransferase A; Provisional	99.17
KOG4300	252	consensus Predicted methyltransferase [General fun	99.17
TIGR00740	239	methyltransferase, putative. A simple BLAST search	99.17
PLN02336	475	phosphoethanolamine N-methyltransferase	99.16
smart00138	264	MeTrc Methyltransferase, chemotaxis proteins. Meth	99.16
PF05148	219	Methyltransf_8: Hypothetical methyltransferase; In	99.16
PF05401	201	NodS: Nodulation protein S (NodS); InterPro: IPR00	99.15
TIGR02081	194	metW methionine biosynthesis protein MetW. This pr	99.14
COG2230	283	Cfa Cyclopropane fatty acid synthase and related m	99.14
PRK04266	226	fibrillarin; Provisional	99.13
PF08242	99	Methyltransf_12: Methyltransferase domain; InterPr	99.12
TIGR02716	306	C20_methyl_CrtF C-20 methyltransferase BchU. Membe	99.1
PRK11705	383	cyclopropane fatty acyl phospholipid synthase; Pro	99.09
PRK06922	677	hypothetical protein; Provisional	99.09
PRK06202	232	hypothetical protein; Provisional	99.09
PRK00121	202	trmB tRNA (guanine-N(7)-)-methyltransferase; Revie	99.07
TIGR00537	179	hemK_rel_arch HemK-related putative methylase. The	99.07
TIGR00438	188	rrmJ cell division protein FtsJ.	99.06
PRK00517	250	prmA ribosomal protein L11 methyltransferase; Revi	99.06
KOG1541	270	consensus Predicted protein carboxyl methylase [Ge	99.05
PF03848	192	TehB: Tellurite resistance protein TehB; InterPro:	99.04
TIGR00138	181	gidB 16S rRNA methyltransferase GidB. GidB (glucos	99.03
TIGR02021	219	BchM-ChlM magnesium protoporphyrin O-methyltransfe	99.02
PRK00107	187	gidB 16S rRNA methyltransferase GidB; Reviewed	99.01
PRK08287	187	cobalt-precorrin-6Y C(15)-methyltransferase; Valid	99.01
PRK05134	233	bifunctional 3-demethylubiquinone-9 3-methyltransf	98.97
TIGR03840	213	TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d	98.96
TIGR01983	224	UbiG ubiquinone biosynthesis O-methyltransferase.	98.95
KOG1270	282	consensus Methyltransferases [Coenzyme transport a	98.93
PTZ00146	293	fibrillarin; Provisional	98.92
PRK13255	218	thiopurine S-methyltransferase; Reviewed	98.9
TIGR02469	124	CbiT precorrin-6Y C5,15-methyltransferase (decarbo	98.9
PRK14968	188	putative methyltransferase; Provisional	98.89
COG2264	300	PrmA Ribosomal protein L11 methylase [Translation,	98.88
TIGR03534	251	RF_mod_PrmC protein-(glutamine-N5) methyltransfera	98.88
TIGR00091	194	tRNA (guanine-N(7)-)-methyltransferase. In E. coli	98.88
PRK00377	198	cbiT cobalt-precorrin-6Y C(15)-methyltransferase;	98.87
PRK13944	205	protein-L-isoaspartate O-methyltransferase; Provis	98.87
TIGR00406	288	prmA ribosomal protein L11 methyltransferase. Ribo	98.87
PF06325	295	PrmA: Ribosomal protein L11 methyltransferase (Prm	98.86
PRK07580	230	Mg-protoporphyrin IX methyl transferase; Validated	98.84
TIGR01177	329	conserved hypothetical protein TIGR01177. This fam	98.82
KOG3010	261	consensus Methyltransferase [General function pred	98.82
KOG3045	325	consensus Predicted RNA methylase involved in rRNA	98.8
PRK13942	212	protein-L-isoaspartate O-methyltransferase; Provis	98.78
KOG2361	264	consensus Predicted methyltransferase [General fun	98.75
TIGR00080	215	pimt protein-L-isoaspartate(D-aspartate) O-methylt	98.75
PRK09489	342	rsmC 16S ribosomal RNA m2G1207 methyltransferase;	98.73
PRK10901	427	16S rRNA methyltransferase B; Provisional	98.7
PLN02232	160	ubiquinone biosynthesis methyltransferase	98.7
PRK14967	223	putative methyltransferase; Provisional	98.69
PF13659	117	Methyltransf_26: Methyltransferase domain; PDB: 3G	98.68
PRK15001	378	SAM-dependent 23S ribosomal RNA mG1835 methyltrans	98.68
PLN03075	296	nicotianamine synthase; Provisional	98.67
PRK14121	390	tRNA (guanine-N(7)-)-methyltransferase; Provisiona	98.66
cd02440	107	AdoMet_MTases S-adenosylmethionine-dependent methy	98.66
PRK14901	434	16S rRNA methyltransferase B; Provisional	98.66
COG4976	287	Predicted methyltransferase (contains TPR repeat)	98.62
TIGR00563	426	rsmB ribosomal RNA small subunit methyltransferase	98.62
COG4123	248	Predicted O-methyltransferase [General function pr	98.61
PRK07402	196	precorrin-6B methylase; Provisional	98.61
PRK09328	275	N5-glutamine S-adenosyl-L-methionine-dependent met	98.6
PRK00312	212	pcm protein-L-isoaspartate O-methyltransferase; Re	98.59
PLN02585	315	magnesium protoporphyrin IX methyltransferase	98.59
PF06080	204	DUF938: Protein of unknown function (DUF938); Inte	98.56
TIGR00446	264	nop2p NOL1/NOP2/sun family putative RNA methylase.	98.56
PF00891	241	Methyltransf_2: O-methyltransferase; InterPro: IPR	98.56
PRK14902	444	16S rRNA methyltransferase B; Provisional	98.53
PF05175	170	MTS: Methyltransferase small domain; InterPro: IPR	98.53
PRK14904	445	16S rRNA methyltransferase B; Provisional	98.52
TIGR03438	301	probable methyltransferase. This model represents	98.51
PF05219	265	DREV: DREV methyltransferase; InterPro: IPR007884	98.48
TIGR03533	284	L3_gln_methyl protein-(glutamine-N5) methyltransfe	98.43
PRK14966	423	unknown domain/N5-glutamine S-adenosyl-L-methionin	98.43
COG4106	257	Tam Trans-aconitate methyltransferase [General fun	98.42
KOG2940	325	consensus Predicted methyltransferase [General fun	98.41
PHA03411	279	putative methyltransferase; Provisional	98.4
PRK13256	226	thiopurine S-methyltransferase; Reviewed	98.38
TIGR00536	284	hemK_fam HemK family putative methylases. The gene	98.37
COG2813	300	RsmC 16S RNA G1207 methylase RsmC [Translation, ri	98.33
PRK13943	322	protein-L-isoaspartate O-methyltransferase; Provis	98.3
PRK11805	307	N5-glutamine S-adenosyl-L-methionine-dependent met	98.3
COG2242	187	CobL Precorrin-6B methylase 2 [Coenzyme metabolism	98.29
PRK14903	431	16S rRNA methyltransferase B; Provisional	98.29
PF05891	218	Methyltransf_PK: AdoMet dependent proline di-methy	98.28
smart00650	169	rADc Ribosomal RNA adenine dimethylases.	98.27
PF01728	181	FtsJ: FtsJ-like methyltransferase; InterPro: IPR00	98.27
TIGR03704	251	PrmC_rel_meth putative protein-(glutamine-N5) meth	98.25
COG0500	257	SmtA SAM-dependent methyltransferases [Secondary m	98.22
PRK00811	283	spermidine synthase; Provisional	98.21
PF01135	209	PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl	98.2
KOG1271	227	consensus Methyltransferases [General function pre	98.2
PRK04457	262	spermidine synthase; Provisional	98.2
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	98.19
PF03291	331	Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971	98.19
COG2521	287	Predicted archaeal methyltransferase [General func	98.19
COG2518	209	Pcm Protein-L-isoaspartate carboxylmethyltransfera	98.17
PRK03612	521	spermidine synthase; Provisional	98.14
COG2519	256	GCD14 tRNA(1-methyladenosine) methyltransferase an	98.13
KOG1975	389	consensus mRNA cap methyltransferase [RNA processi	98.1
PRK13168	443	rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe	98.06
TIGR00417	270	speE spermidine synthase. the SpeE subunit of sper	98.04
KOG1331	293	consensus Predicted methyltransferase [General fun	98.02
PF05724	218	TPMT: Thiopurine S-methyltransferase (TPMT); Inter	98.02
PRK01581	374	speE spermidine synthase; Validated	98.01
PF02390	195	Methyltransf_4: Putative methyltransferase ; Inter	98.0
COG2890	280	HemK Methylase of polypeptide chain release factor	97.99
PF08704	247	GCD14: tRNA methyltransferase complex GCD14 subuni	97.98
TIGR00478	228	tly hemolysin TlyA family protein. Hemolysins are	97.92
PLN02781	234	Probable caffeoyl-CoA O-methyltransferase	97.92
PRK10611	287	chemotaxis methyltransferase CheR; Provisional	97.91
PHA03412	241	putative methyltransferase; Provisional	97.91
KOG2899	288	consensus Predicted methyltransferase [General fun	97.9
KOG1269	364	consensus SAM-dependent methyltransferases [Lipid	97.89
KOG1499	346	consensus Protein arginine N-methyltransferase PRM	97.84
TIGR00479	431	rumA 23S rRNA (uracil-5-)-methyltransferase RumA.	97.84
PLN02366	308	spermidine synthase	97.83
PF11968	219	DUF3321: Putative methyltransferase (DUF3321); Int	97.76
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	97.74
PF10294	173	Methyltransf_16: Putative methyltransferase; Inter	97.71
PRK03522	315	rumB 23S rRNA methyluridine methyltransferase; Rev	97.69
PF01739	196	CheR: CheR methyltransferase, SAM binding domain;	97.68
COG0220	227	Predicted S-adenosylmethionine-dependent methyltra	97.67
PLN02672	1082	methionine S-methyltransferase	97.6
COG1041	347	Predicted DNA modification methylase [DNA replicat	97.58
KOG3178	342	consensus Hydroxyindole-O-methyltransferase and re	97.56
PRK14896	258	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	97.54
PRK15128	396	23S rRNA m(5)C1962 methyltransferase; Provisional	97.54
PRK04148	134	hypothetical protein; Provisional	97.51
PRK00274	272	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	97.47
PLN02476	278	O-methyltransferase	97.47
PF01596	205	Methyltransf_3: O-methyltransferase; InterPro: IPR	97.46
COG1352	268	CheR Methylase of chemotaxis methyl-accepting prot	97.43
PF05185	448	PRMT5: PRMT5 arginine-N-methyltransferase; InterPr	97.43
COG0293	205	FtsJ 23S rRNA methylase [Translation, ribosomal st	97.43
COG4122	219	Predicted O-methyltransferase [General function pr	97.42
TIGR02085	374	meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer	97.42
PRK11933	470	yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF;	97.41
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	97.4
TIGR00755	253	ksgA dimethyladenosine transferase. Alternate name	97.29
COG4627	185	Uncharacterized protein conserved in bacteria [Fun	97.16
PF01234	256	NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I	97.15
PF12147	311	Methyltransf_20: Putative methyltransferase; Inter	97.13
PRK11727	321	23S rRNA mA1618 methyltransferase; Provisional	97.11
PF07942	270	N2227: N2227-like protein; InterPro: IPR012901 Thi	97.1
PRK10909	199	rsmD 16S rRNA m(2)G966-methyltransferase; Provisio	97.05
PLN02589	247	caffeoyl-CoA O-methyltransferase	96.95
PLN02823	336	spermine synthase	96.94
PTZ00338	294	dimethyladenosine transferase-like protein; Provis	96.86
KOG2904	328	consensus Predicted methyltransferase [General fun	96.81
KOG1661	237	consensus Protein-L-isoaspartate(D-aspartate) O-me	96.76
COG2263	198	Predicted RNA methylase [Translation, ribosomal st	96.76
PF02527	184	GidB: rRNA small subunit methyltransferase G; Inte	96.59
PRK00536	262	speE spermidine synthase; Provisional	96.58
KOG3191	209	consensus Predicted N6-DNA-methyltransferase [Tran	96.55
KOG3987	288	consensus Uncharacterized conserved protein DREV/C	96.46
PF01269	229	Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr	96.33
PF02475	200	Met_10: Met-10+ like-protein; InterPro: IPR003402	96.33
TIGR00095	189	RNA methyltransferase, RsmD family. This model rep	96.28
COG0144	355	Sun tRNA and rRNA cytosine-C5-methylases [Translat	96.25
PRK11760	357	putative 23S rRNA C2498 ribose 2'-O-ribose methylt	96.24
KOG1663	237	consensus O-methyltransferase [Secondary metabolit	96.19
PRK04338	382	N(2),N(2)-dimethylguanosine tRNA methyltransferase	96.17
PF01170	179	UPF0020: Putative RNA methylase family UPF0020; In	96.15
COG0030	259	KsgA Dimethyladenosine transferase (rRNA methylati	96.14
COG0421	282	SpeE Spermidine synthase [Amino acid transport and	96.09
PRK05031	362	tRNA (uracil-5-)-methyltransferase; Validated	96.0
KOG4589	232	consensus Cell division protein FtsJ [Cell cycle c	95.96
COG3963	194	Phospholipid N-methyltransferase [Lipid metabolism	95.94
PF01564	246	Spermine_synth: Spermine/spermidine synthase; Inte	95.88
COG4798	238	Predicted methyltransferase [General function pred	95.87
KOG1500	517	consensus Protein arginine N-methyltransferase CAR	95.78
PF09243	274	Rsm22: Mitochondrial small ribosomal subunit Rsm22	95.67
KOG2915	314	consensus tRNA(1-methyladenosine) methyltransferas	95.2
PF02384	311	N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T	95.01
COG0357	215	GidB Predicted S-adenosylmethionine-dependent meth	94.91
KOG2352	482	consensus Predicted spermine/spermidine synthase [	94.73
COG1092	393	Predicted SAM-dependent methyltransferases [Genera	94.56
PRK13699	227	putative methylase; Provisional	94.48
COG2520	341	Predicted methyltransferase [General function pred	94.44
KOG0820	315	consensus Ribosomal RNA adenine dimethylase [RNA p	94.18
TIGR03439	319	methyl_EasF probable methyltransferase domain, Eas	94.13
COG1189	245	Predicted rRNA methylase [Translation, ribosomal s	93.99
KOG3201	201	consensus Uncharacterized conserved protein [Funct	93.79
TIGR00308	374	TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi	93.61
PRK00050	296	16S rRNA m(4)C1402 methyltranserfase; Provisional	93.4
PF13578	106	Methyltransf_24: Methyltransferase domain; PDB: 3S	93.04
TIGR02987	524	met_A_Alw26 type II restriction m6 adenine DNA met	92.8
PF05958	352	tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas	92.8
PF08123	205	DOT1: Histone methylation protein DOT1 ; InterPro:	92.77
PF00398	262	RrnaAD: Ribosomal RNA adenine dimethylase; InterPr	92.43
TIGR02143	353	trmA_only tRNA (uracil-5-)-methyltransferase. This	92.41
PF09445	163	Methyltransf_15: RNA cap guanine-N2 methyltransfer	92.38
COG5459	484	Predicted rRNA methylase [Translation, ribosomal s	92.26
COG1889	231	NOP1 Fibrillarin-like rRNA methylase [Translation,	92.08
PF13679	141	Methyltransf_32: Methyltransferase domain	92.06
PF04816	205	DUF633: Family of unknown function (DUF633) ; Inte	91.82
PF04672	267	Methyltransf_19: S-adenosyl methyltransferase; Int	91.42
PF03269	177	DUF268: Caenorhabditis protein of unknown function	90.99
TIGR01444	143	fkbM_fam methyltransferase, FkbM family. Members o	90.97
cd08254	338	hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carbo	90.64
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	90.6
PLN02668	386	indole-3-acetate carboxyl methyltransferase	90.59
PF10672	286	Methyltrans_SAM: S-adenosylmethionine-dependent me	90.46
COG2265	432	TrmA SAM-dependent methyltransferases related to t	90.43
COG3897	218	Predicted methyltransferase [General function pred	90.41
KOG1709	271	consensus Guanidinoacetate methyltransferase and r	90.4
PF03602	183	Cons_hypoth95: Conserved hypothetical protein 95;	90.35
KOG3115	249	consensus Methyltransferase-like protein [General	88.75
COG4076	252	Predicted RNA methylase [General function predicti	88.66
KOG3420	185	consensus Predicted RNA methylase [Translation, ri	88.2
PF06859	110	Bin3: Bicoid-interacting protein 3 (Bin3); InterPr	87.89
cd08283	386	FDH_like_1 Glutathione-dependent formaldehyde dehy	87.53
KOG2793	248	consensus Putative N2,N2-dimethylguanosine tRNA me	87.15
COG0742	187	N6-adenine-specific methylase [DNA replication, re	86.07
PRK11524	284	putative methyltransferase; Provisional	85.59
KOG1099	294	consensus SAM-dependent methyltransferase/cell div	84.76
PF01189	283	Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR	84.66
PF10354	166	DUF2431: Domain of unknown function (DUF2431); Int	84.34
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	84.21
PF07757	112	AdoMet_MTase: Predicted AdoMet-dependent methyltra	83.66
PRK10742	250	putative methyltransferase; Provisional	83.58
PF00107	130	ADH_zinc_N: Zinc-binding dehydrogenase; InterPro:	83.35
PF03492	334	Methyltransf_7: SAM dependent carboxyl methyltrans	82.46
cd00315	275	Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth	81.67
KOG1122	460	consensus tRNA and rRNA cytosine-C5-methylase (nuc	80.7

>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases

Probab=100.00  E-value=1.8e-48  Score=409.85  Aligned_cols=237  Identities=29%  Similarity=0.467  Sum_probs=199.4

Q ss_pred             CCCCCCCCCChHHHHHh--------hhccCCCC-CCCCCccccCCCCCCCCCcCCccCCCCCCCCccccccccccccccc
Q 046488          201 DYDVGEICNDDWKLAQK--------LMVHGCDP-LPRRRCFSRAPQLYSRPFYINESMWKLPDNRNVRWSQYRCKNFTCL  271 (480)
Q Consensus       201 ~Y~~~~~C~dd~~~~~~--------l~~~~c~p-~pr~rCl~~~P~~y~~P~pwp~sl~~~P~~~~~~W~~y~ck~~~cl  271 (480)
                      ||+   ||.|+.+..+.        ..+++||| .++++||+|+|++|+.|+||       |.|||++|           
T Consensus         1 dy~---PC~D~~~~~~~~~~~~~~~~rERhCP~~~~~~~CLVp~P~gYk~P~~W-------P~SRd~iW-----------   59 (506)
T PF03141_consen    1 DYI---PCLDNSRAIKFLLSRERMEHRERHCPPPEERLRCLVPPPKGYKTPIPW-------PKSRDYIW-----------   59 (506)
T ss_pred             CCc---CCCCHHHHHhhccCcccccEeeccCcCCCCCCccccCCCccCCCCCCC-------Ccccceee-----------
Confidence            688   99999876444        12367887 68999999999999999999       88999999           


Q ss_pred             cCCCCCCCccccccccccccccccccccccc----CCCC---CCchhhhhHHH---hcCC--CCCCCCeEEEECCCCcHH
Q 046488          272 ASNATHKGFFKCADCFNLTDHEMPRWIKNVD----IDPI---TNLTADFLIPE---VLDI--KPGEIRIGLDFSIGTGTF  339 (480)
Q Consensus       272 ~~n~~~~~~~~c~~cfdl~~k~~q~W~~~~g----f~~~---~~~~ad~~I~~---vL~l--~~g~iR~VLDVGCGtG~f  339 (480)
                      ++|++|+.+        .+.+..|+|++.+|    ||||   |.+|++.||++   ++++  ..|.+|++||||||+|+|
T Consensus        60 ~~Nvph~~L--------~~~K~~qnWv~~~gd~~~FPgggt~F~~Ga~~Yid~i~~~~~~~~~~g~iR~~LDvGcG~aSF  131 (506)
T PF03141_consen   60 YANVPHTKL--------AEEKADQNWVRVEGDKFRFPGGGTMFPHGADHYIDQIAEMIPLIKWGGGIRTALDVGCGVASF  131 (506)
T ss_pred             ecccCchHH--------hhhcccccceeecCCEEEeCCCCccccCCHHHHHHHHHHHhhccccCCceEEEEeccceeehh
Confidence            579999974        44599999999988    8865   88999999874   6666  668899999999999999


Q ss_pred             HHHHhhCCCEEEEEecCCChhHHHHHHHhCCCCeeeec--ccCCCCCCCccchheecccccCccChhcHHHHHHHHHhcc
Q 046488          340 AARMREFNVTLVSAIINLGAPFNEMIALRGLVPLYITI--NQRVPFFDNTLDLIHTTRFLDGWIDFVLLDFILYDWDRVL  417 (480)
Q Consensus       340 Aa~Lae~gV~Vv~vd~d~~~~~~~~iA~rglip~~~~~--ae~LPFpd~SFDlV~ss~vL~h~~d~~~l~~~L~EI~RVL  417 (480)
                      |++|.++||.+|++++++.++++.|+|+++++|++++.  .++||||+++||+|||++|+.+|...+  +.+|.|++|||
T Consensus       132 ~a~l~~r~V~t~s~a~~d~~~~qvqfaleRGvpa~~~~~~s~rLPfp~~~fDmvHcsrc~i~W~~~~--g~~l~evdRvL  209 (506)
T PF03141_consen  132 GAYLLERNVTTMSFAPNDEHEAQVQFALERGVPAMIGVLGSQRLPFPSNAFDMVHCSRCLIPWHPND--GFLLFEVDRVL  209 (506)
T ss_pred             HHHHhhCCceEEEcccccCCchhhhhhhhcCcchhhhhhccccccCCccchhhhhcccccccchhcc--cceeehhhhhh
Confidence            99999999999999999999999999999999999877  799999999999999999999998776  67999999999


Q ss_pred             cCCcEEEEeecc---CChhhHH-HHHHHHHHcCceeeEEEEeeccCCCCcceeEEEEEEeCCCC
Q 046488          418 RPGGLLWIDSFF---CAKEDMN-DYLEVFKMLKYKKHKWVVVPKRDKDDREVFFSAVLEKPPRP  477 (480)
Q Consensus       418 KPGG~fiI~~f~---~~~edL~-~~~~~l~~lGfkkl~W~~~~k~d~~~~E~~lsav~qKP~~~  477 (480)
                      ||||+||++.--   ...++.. ++..+-+-  .+.+||+...+.++       +||||||.++
T Consensus       210 RpGGyfv~S~ppv~~r~~~~~~~~~~~~~~l--~~~lCW~~va~~~~-------~aIwqKp~~~  264 (506)
T PF03141_consen  210 RPGGYFVLSGPPVYQRTDEDLEEEWNAMEDL--AKSLCWKKVAEKGD-------TAIWQKPTNN  264 (506)
T ss_pred             ccCceEEecCCcccccchHHHHHHHHHHHHH--HHHHHHHHheeeCC-------EEEEeccCCc
Confidence            999999998532   3333332 23222222  35577877777665       9999999986

; GO: 0008168 methyltransferase activity

>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases

Probab=99.95  E-value=1.4e-28  Score=259.86  Aligned_cols=242  Identities=21%  Similarity=0.315  Sum_probs=189.4

Q ss_pred             cccchhhhcccchHhhhhhcCCCCCCCCCChHHHHHhhhccCCCCCCCCCccccCCCC-----CCCCCcCCccCCCCCCC
Q 046488          181 TFNSIGHTCFSMKKELEEYMDYDVGEICNDDWKLAQKLMVHGCDPLPRRRCFSRAPQL-----YSRPFYINESMWKLPDN  255 (480)
Q Consensus       181 ~~~~~g~~C~~~~~~l~~y~~Y~~~~~C~dd~~~~~~l~~~~c~p~pr~rCl~~~P~~-----y~~P~pwp~sl~~~P~~  255 (480)
                      -++|+.|+|+..+.      ..+....|.++.+....|+ .     |.+.|+++.|..     ...|.+||+||.+.|++
T Consensus       258 wqKp~~~~Cy~~r~------~~~~pplC~~~~dpd~aWY-~-----~l~~Cit~~p~~~~~~~~~~~~~WP~RL~~~P~r  325 (506)
T PF03141_consen  258 WQKPTNNSCYQKRK------PGKSPPLCDSSDDPDAAWY-V-----PLEACITPLPEVSSEIAGGWLPKWPERLNAVPPR  325 (506)
T ss_pred             EeccCCchhhhhcc------CCCCCCCCCCCCCCcchhh-c-----chhhhcCcCCcccccccccCCCCChhhhccCchh
Confidence            48999999998775      5677789996555666777 3     688999999984     78999999999999987


Q ss_pred             CccccccccccccccccCCCCCCCcccccccccccccccccccccccCCCCCCchhhhhHHHhcC--CCCCCCCeEEEEC
Q 046488          256 RNVRWSQYRCKNFTCLASNATHKGFFKCADCFNLTDHEMPRWIKNVDIDPITNLTADFLIPEVLD--IKPGEIRIGLDFS  333 (480)
Q Consensus       256 ~~~~W~~y~ck~~~cl~~n~~~~~~~~c~~cfdl~~k~~q~W~~~~gf~~~~~~~ad~~I~~vL~--l~~g~iR~VLDVG  333 (480)
                      ....=           +....       ++-|   .++++.|....          ++| ..++.  +..+.+|+|||++
T Consensus       326 l~~~~-----------~~g~~-------~e~F---~~Dt~~Wk~~V----------~~Y-~~l~~~~i~~~~iRNVMDMn  373 (506)
T PF03141_consen  326 LSSGS-----------IPGIS-------PEEF---KEDTKHWKKRV----------SHY-KKLLGLAIKWGRIRNVMDMN  373 (506)
T ss_pred             hhcCC-----------cCCCC-------HHHH---HHHHHHHHHHH----------HHH-HHhhcccccccceeeeeeec
Confidence            64321           00111       1112   48999998875          223 23444  7889999999999


Q ss_pred             CCCcHHHHHHhhCCCEEEEEecCCChhHHHHHHHhCCCCeeeecccCCCCCCCccchheecccccCccChhcHHHHHHHH
Q 046488          334 IGTGTFAARMREFNVTLVSAIINLGAPFNEMIALRGLVPLYITINQRVPFFDNTLDLIHTTRFLDGWIDFVLLDFILYDW  413 (480)
Q Consensus       334 CGtG~fAa~Lae~gV~Vv~vd~d~~~~~~~~iA~rglip~~~~~ae~LPFpd~SFDlV~ss~vL~h~~d~~~l~~~L~EI  413 (480)
                      +|+|+||++|.+++|+||++.+...+.++..|++||+++.+++|+|++|+++++||+||+.++|..+.+++.++.+|.||
T Consensus       374 Ag~GGFAAAL~~~~VWVMNVVP~~~~ntL~vIydRGLIG~yhDWCE~fsTYPRTYDLlHA~~lfs~~~~rC~~~~illEm  453 (506)
T PF03141_consen  374 AGYGGFAAALIDDPVWVMNVVPVSGPNTLPVIYDRGLIGVYHDWCEAFSTYPRTYDLLHADGLFSLYKDRCEMEDILLEM  453 (506)
T ss_pred             ccccHHHHHhccCCceEEEecccCCCCcchhhhhcccchhccchhhccCCCCcchhheehhhhhhhhcccccHHHHHHHh
Confidence            99999999999999999999999888899999999999999999999999999999999999999999999999999999


Q ss_pred             HhcccCCcEEEEeeccCChhhHHHHHHHHHHcCceeeEEEEeeccCCCCcceeEEEEEEe
Q 046488          414 DRVLRPGGLLWIDSFFCAKEDMNDYLEVFKMLKYKKHKWVVVPKRDKDDREVFFSAVLEK  473 (480)
Q Consensus       414 ~RVLKPGG~fiI~~f~~~~edL~~~~~~l~~lGfkkl~W~~~~k~d~~~~E~~lsav~qK  473 (480)
                      +|+|||||++||.+   ..+-+.++..+++++.|+...+.....  ....|.++.  .||
T Consensus       454 DRILRP~G~~iiRD---~~~vl~~v~~i~~~lrW~~~~~d~e~g--~~~~EkiL~--~~K  506 (506)
T PF03141_consen  454 DRILRPGGWVIIRD---TVDVLEKVKKIAKSLRWEVRIHDTEDG--PDGPEKILI--CQK  506 (506)
T ss_pred             HhhcCCCceEEEec---cHHHHHHHHHHHHhCcceEEEEecCCC--CCCCceEEE--EEC
Confidence            99999999999932   222345667777776555443333211  123577664  454

; GO: 0008168 methyltransferase activity

>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

Probab=99.71  E-value=1.4e-16  Score=156.90  Aligned_cols=97  Identities=29%  Similarity=0.350  Sum_probs=78.0

Q ss_pred             CeEEEECCCCcHHHHHHhhCC--CEEEEEecCCChhHHHHHHHh----C--CCCeeeecccCCCCCCCccchheeccccc
Q 046488          327 RIGLDFSIGTGTFAARMREFN--VTLVSAIINLGAPFNEMIALR----G--LVPLYITINQRVPFFDNTLDLIHTTRFLD  398 (480)
Q Consensus       327 R~VLDVGCGtG~fAa~Lae~g--V~Vv~vd~d~~~~~~~~iA~r----g--lip~~~~~ae~LPFpd~SFDlV~ss~vL~  398 (480)
                      .+|||||||||.+|..+++..  ..++++|++.  .|+....++    +  .+.+++++++.|||+|+|||+|.+++.|+
T Consensus        53 ~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~--~ML~~a~~k~~~~~~~~i~fv~~dAe~LPf~D~sFD~vt~~fglr  130 (238)
T COG2226          53 DKVLDVACGTGDMALLLAKSVGTGEVVGLDISE--SMLEVAREKLKKKGVQNVEFVVGDAENLPFPDNSFDAVTISFGLR  130 (238)
T ss_pred             CEEEEecCCccHHHHHHHHhcCCceEEEEECCH--HHHHHHHHHhhccCccceEEEEechhhCCCCCCccCEEEeeehhh
Confidence            489999999999999999873  5677777652  444432222    1  14467889999999999999999999999


Q ss_pred             CccChhcHHHHHHHHHhcccCCcEEEEeec
Q 046488          399 GWIDFVLLDFILYDWDRVLRPGGLLWIDSF  428 (480)
Q Consensus       399 h~~d~~~l~~~L~EI~RVLKPGG~fiI~~f  428 (480)
                      ++.+.   +.+|+|++|||||||++++.++
T Consensus       131 nv~d~---~~aL~E~~RVlKpgG~~~vle~  157 (238)
T COG2226         131 NVTDI---DKALKEMYRVLKPGGRLLVLEF  157 (238)
T ss_pred             cCCCH---HHHHHHHHHhhcCCeEEEEEEc
Confidence            99877   4699999999999999998743

>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.65  E-value=3.4e-16  Score=127.03  Aligned_cols=91  Identities=31%  Similarity=0.383  Sum_probs=70.4

Q ss_pred             EEECCCCcHHHHHHhhC-CCEEEEEecCCChhHHHHHHHhC---CCCeeeecccCCCCCCCccchheecccccCccChhc
Q 046488          330 LDFSIGTGTFAARMREF-NVTLVSAIINLGAPFNEMIALRG---LVPLYITINQRVPFFDNTLDLIHTTRFLDGWIDFVL  405 (480)
Q Consensus       330 LDVGCGtG~fAa~Lae~-gV~Vv~vd~d~~~~~~~~iA~rg---lip~~~~~ae~LPFpd~SFDlV~ss~vL~h~~d~~~  405 (480)
                      ||+|||+|.++..|+++ +..+++++++.  ++.....++.   .+.......+.+||++++||+|++..+++|+.+.  
T Consensus         1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~--~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~~~~--   76 (95)
T PF08241_consen    1 LDIGCGTGRFAAALAKRGGASVTGIDISE--EMLEQARKRLKNEGVSFRQGDAEDLPFPDNSFDVVFSNSVLHHLEDP--   76 (95)
T ss_dssp             EEET-TTSHHHHHHHHTTTCEEEEEES-H--HHHHHHHHHTTTSTEEEEESBTTSSSS-TT-EEEEEEESHGGGSSHH--
T ss_pred             CEecCcCCHHHHHHHhccCCEEEEEeCCH--HHHHHHHhcccccCchheeehHHhCccccccccccccccceeeccCH--
Confidence            89999999999999999 88999988763  3333333222   2335667799999999999999999999988444  


Q ss_pred             HHHHHHHHHhcccCCcEEEE
Q 046488          406 LDFILYDWDRVLRPGGLLWI  425 (480)
Q Consensus       406 l~~~L~EI~RVLKPGG~fiI  425 (480)
                       ..++.|+.|+|||||+++|
T Consensus        77 -~~~l~e~~rvLk~gG~l~~   95 (95)
T PF08241_consen   77 -EAALREIYRVLKPGGRLVI   95 (95)
T ss_dssp             -HHHHHHHHHHEEEEEEEEE
T ss_pred             -HHHHHHHHHHcCcCeEEeC
Confidence             6799999999999999886

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....

>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []

Probab=99.63  E-value=7.3e-16  Score=151.01  Aligned_cols=110  Identities=27%  Similarity=0.385  Sum_probs=73.2

Q ss_pred             HhcCCCCCCCCeEEEECCCCcHHHHHHhhC---CCEEEEEecCCChhHHHHH----HHhC--CCCeeeecccCCCCCCCc
Q 046488          317 EVLDIKPGEIRIGLDFSIGTGTFAARMREF---NVTLVSAIINLGAPFNEMI----ALRG--LVPLYITINQRVPFFDNT  387 (480)
Q Consensus       317 ~vL~l~~g~iR~VLDVGCGtG~fAa~Lae~---gV~Vv~vd~d~~~~~~~~i----A~rg--lip~~~~~ae~LPFpd~S  387 (480)
                      +.+...++.  +|||+|||||.++..++++   +..++++|++  ..++...    ...+  .+.+..++++.|||+|++
T Consensus        41 ~~~~~~~g~--~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s--~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~~d~s  116 (233)
T PF01209_consen   41 KLLGLRPGD--RVLDVACGTGDVTRELARRVGPNGKVVGVDIS--PGMLEVARKKLKREGLQNIEFVQGDAEDLPFPDNS  116 (233)
T ss_dssp             HHHT--S----EEEEET-TTSHHHHHHGGGSS---EEEEEES---HHHHHHHHHHHHHTT--SEEEEE-BTTB--S-TT-
T ss_pred             hccCCCCCC--EEEEeCCChHHHHHHHHHHCCCccEEEEecCC--HHHHHHHHHHHHhhCCCCeeEEEcCHHHhcCCCCc
Confidence            344555554  8999999999999999875   2467777754  3444332    2222  245667889999999999


Q ss_pred             cchheecccccCccChhcHHHHHHHHHhcccCCcEEEEeeccCChh
Q 046488          388 LDLIHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDSFFCAKE  433 (480)
Q Consensus       388 FDlV~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~f~~~~e  433 (480)
                      ||+|++++.+++.++.   ..++.|++|||||||+++|.+|..+..
T Consensus       117 fD~v~~~fglrn~~d~---~~~l~E~~RVLkPGG~l~ile~~~p~~  159 (233)
T PF01209_consen  117 FDAVTCSFGLRNFPDR---ERALREMYRVLKPGGRLVILEFSKPRN  159 (233)
T ss_dssp             EEEEEEES-GGG-SSH---HHHHHHHHHHEEEEEEEEEEEEEB-SS
T ss_pred             eeEEEHHhhHHhhCCH---HHHHHHHHHHcCCCeEEEEeeccCCCC
Confidence            9999999999999876   469999999999999999987766543

Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.

>PLN02233 ubiquinone biosynthesis methyltransferase

Probab=99.61  E-value=7.2e-15  Score=145.55  Aligned_cols=105  Identities=23%  Similarity=0.162  Sum_probs=79.8

Q ss_pred             cCCCCCCCCeEEEECCCCcHHHHHHhhC-C--CEEEEEecCCChhHHHHHHHh------C---CCCeeeecccCCCCCCC
Q 046488          319 LDIKPGEIRIGLDFSIGTGTFAARMREF-N--VTLVSAIINLGAPFNEMIALR------G---LVPLYITINQRVPFFDN  386 (480)
Q Consensus       319 L~l~~g~iR~VLDVGCGtG~fAa~Lae~-g--V~Vv~vd~d~~~~~~~~iA~r------g---lip~~~~~ae~LPFpd~  386 (480)
                      +.+.++  .+|||+|||||.++..++++ +  ..++++|++.  .+...+.++      +   .+.+..++++.+||+++
T Consensus        69 ~~~~~~--~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~--~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~  144 (261)
T PLN02233         69 SGAKMG--DRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSS--EQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDC  144 (261)
T ss_pred             hCCCCC--CEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCH--HHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCC
Confidence            345554  48999999999999998875 3  4678877652  343332211      1   23455677899999999


Q ss_pred             ccchheecccccCccChhcHHHHHHHHHhcccCCcEEEEeeccC
Q 046488          387 TLDLIHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDSFFC  430 (480)
Q Consensus       387 SFDlV~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~f~~  430 (480)
                      +||+|+++++++++.++   ..++.|+.|+|||||++++.+|..
T Consensus       145 sfD~V~~~~~l~~~~d~---~~~l~ei~rvLkpGG~l~i~d~~~  185 (261)
T PLN02233        145 YFDAITMGYGLRNVVDR---LKAMQEMYRVLKPGSRVSILDFNK  185 (261)
T ss_pred             CEeEEEEecccccCCCH---HHHHHHHHHHcCcCcEEEEEECCC
Confidence            99999999999998776   469999999999999999886543

>PLN02244 tocopherol O-methyltransferase

Probab=99.53  E-value=8e-14  Score=143.11  Aligned_cols=124  Identities=19%  Similarity=0.249  Sum_probs=92.1

Q ss_pred             CCeEEEECCCCcHHHHHHhhC-CCEEEEEecCCChh--HHHHHHHhCC---CCeeeecccCCCCCCCccchheecccccC
Q 046488          326 IRIGLDFSIGTGTFAARMREF-NVTLVSAIINLGAP--FNEMIALRGL---VPLYITINQRVPFFDNTLDLIHTTRFLDG  399 (480)
Q Consensus       326 iR~VLDVGCGtG~fAa~Lae~-gV~Vv~vd~d~~~~--~~~~iA~rgl---ip~~~~~ae~LPFpd~SFDlV~ss~vL~h  399 (480)
                      ..+|||||||+|.++..|+++ +..+++++++....  +....+.++.   +.+..+++..+||++++||+|++..+++|
T Consensus       119 ~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~FD~V~s~~~~~h  198 (340)
T PLN02244        119 PKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPFEDGQFDLVWSMESGEH  198 (340)
T ss_pred             CCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCCCCCCccEEEECCchhc
Confidence            358999999999999999986 78888888763211  1112222332   34556678889999999999999999999


Q ss_pred             ccChhcHHHHHHHHHhcccCCcEEEEeeccCC----h------h------------------hHHHHHHHHHHcCceeeE
Q 046488          400 WIDFVLLDFILYDWDRVLRPGGLLWIDSFFCA----K------E------------------DMNDYLEVFKMLKYKKHK  451 (480)
Q Consensus       400 ~~d~~~l~~~L~EI~RVLKPGG~fiI~~f~~~----~------e------------------dL~~~~~~l~~lGfkkl~  451 (480)
                      +.+.   ..++.|+.|+|||||+|++..|...    .      .                  ..+.+.++++..||..+.
T Consensus       199 ~~d~---~~~l~e~~rvLkpGG~lvi~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~p~~~s~~~~~~~l~~aGf~~v~  275 (340)
T PLN02244        199 MPDK---RKFVQELARVAAPGGRIIIVTWCHRDLEPGETSLKPDEQKLLDKICAAYYLPAWCSTSDYVKLAESLGLQDIK  275 (340)
T ss_pred             cCCH---HHHHHHHHHHcCCCcEEEEEEecccccccccccCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHCCCCeeE
Confidence            9876   4699999999999999999765321    0      0                  123566788999998765


Q ss_pred             E
Q 046488          452 W  452 (480)
Q Consensus       452 W  452 (480)
                      .
T Consensus       276 ~  276 (340)
T PLN02244        276 T  276 (340)
T ss_pred             e
Confidence            4

>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional

Probab=99.48  E-value=3.3e-13  Score=133.85  Aligned_cols=131  Identities=17%  Similarity=0.152  Sum_probs=94.2

Q ss_pred             hcCCCCCCCCeEEEECCCCcHHHHHHhhC-CCEEEEEecCCChhHHHHHHHhC-----CCCeeeecccCCCCCCCccchh
Q 046488          318 VLDIKPGEIRIGLDFSIGTGTFAARMREF-NVTLVSAIINLGAPFNEMIALRG-----LVPLYITINQRVPFFDNTLDLI  391 (480)
Q Consensus       318 vL~l~~g~iR~VLDVGCGtG~fAa~Lae~-gV~Vv~vd~d~~~~~~~~iA~rg-----lip~~~~~ae~LPFpd~SFDlV  391 (480)
                      .+.+.++.  +|||||||+|..+..+++. +..+++++++.  .+ ...+.++     .+.+...++..+||++++||+|
T Consensus        47 ~l~l~~~~--~VLDiGcG~G~~a~~la~~~~~~v~giD~s~--~~-~~~a~~~~~~~~~i~~~~~D~~~~~~~~~~FD~V  121 (263)
T PTZ00098         47 DIELNENS--KVLDIGSGLGGGCKYINEKYGAHVHGVDICE--KM-VNIAKLRNSDKNKIEFEANDILKKDFPENTFDMI  121 (263)
T ss_pred             hCCCCCCC--EEEEEcCCCChhhHHHHhhcCCEEEEEECCH--HH-HHHHHHHcCcCCceEEEECCcccCCCCCCCeEEE
Confidence            34555553  8999999999999999764 67888888652  22 2223222     2344456677889999999999


Q ss_pred             eecccccCccChhcHHHHHHHHHhcccCCcEEEEeeccCCh-----h--------------hHHHHHHHHHHcCceeeEE
Q 046488          392 HTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDSFFCAK-----E--------------DMNDYLEVFKMLKYKKHKW  452 (480)
Q Consensus       392 ~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~f~~~~-----e--------------dL~~~~~~l~~lGfkkl~W  452 (480)
                      ++..++.|+...+ ...++.+++|+|||||+|++.++....     +              ....|.++++..||..+.+
T Consensus       122 ~s~~~l~h~~~~d-~~~~l~~i~r~LkPGG~lvi~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~  200 (263)
T PTZ00098        122 YSRDAILHLSYAD-KKKLFEKCYKWLKPNGILLITDYCADKIENWDEEFKAYIKKRKYTLIPIQEYGDLIKSCNFQNVVA  200 (263)
T ss_pred             EEhhhHHhCCHHH-HHHHHHHHHHHcCCCcEEEEEEeccccccCcHHHHHHHHHhcCCCCCCHHHHHHHHHHCCCCeeeE
Confidence            9988888876322 267999999999999999998653321     0              1245778999999998776


Q ss_pred             EE
Q 046488          453 VV  454 (480)
Q Consensus       453 ~~  454 (480)
                      .-
T Consensus       201 ~d  202 (263)
T PTZ00098        201 KD  202 (263)
T ss_pred             Ee
Confidence            43

>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C

Probab=99.48  E-value=3.5e-13  Score=120.02  Aligned_cols=126  Identities=24%  Similarity=0.302  Sum_probs=89.9

Q ss_pred             hHHHhcC-CCCCCCCeEEEECCCCcHHHHHHhhCCCEEEEEecCCChhHHHHHHHhCCCCeeeecccCCCCCCCccchhe
Q 046488          314 LIPEVLD-IKPGEIRIGLDFSIGTGTFAARMREFNVTLVSAIINLGAPFNEMIALRGLVPLYITINQRVPFFDNTLDLIH  392 (480)
Q Consensus       314 ~I~~vL~-l~~g~iR~VLDVGCGtG~fAa~Lae~gV~Vv~vd~d~~~~~~~~iA~rglip~~~~~ae~LPFpd~SFDlV~  392 (480)
                      .+..+++ ..+  ..+|||+|||+|.++..|++.|..+++++++.  .+...    .............++++++||+|+
T Consensus        12 ~~~~~~~~~~~--~~~vLDiGcG~G~~~~~l~~~~~~~~g~D~~~--~~~~~----~~~~~~~~~~~~~~~~~~~fD~i~   83 (161)
T PF13489_consen   12 LLERLLPRLKP--GKRVLDIGCGTGSFLRALAKRGFEVTGVDISP--QMIEK----RNVVFDNFDAQDPPFPDGSFDLII   83 (161)
T ss_dssp             HHHHHHTCTTT--TSEEEEESSTTSHHHHHHHHTTSEEEEEESSH--HHHHH----TTSEEEEEECHTHHCHSSSEEEEE
T ss_pred             HHHHHhcccCC--CCEEEEEcCCCCHHHHHHHHhCCEEEEEECCH--HHHhh----hhhhhhhhhhhhhhccccchhhHh
Confidence            4445554 333  34899999999999999999999999998752  22222    222222222446667899999999


Q ss_pred             ecccccCccChhcHHHHHHHHHhcccCCcEEEEeeccCCh-------------h--------hHHHHHHHHHHcCceee
Q 046488          393 TTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDSFFCAK-------------E--------DMNDYLEVFKMLKYKKH  450 (480)
Q Consensus       393 ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~f~~~~-------------e--------dL~~~~~~l~~lGfkkl  450 (480)
                      |..+|+|+.++   ..+|.++.|+|||||++++.......             .        ..+.+..++++.||+.+
T Consensus        84 ~~~~l~~~~d~---~~~l~~l~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~G~~iv  159 (161)
T PF13489_consen   84 CNDVLEHLPDP---EEFLKELSRLLKPGGYLVISDPNRDDPSPRSFLKWRYDRPYGGHVHFFSPDELRQLLEQAGFEIV  159 (161)
T ss_dssp             EESSGGGSSHH---HHHHHHHHHCEEEEEEEEEEEEBTTSHHHHHHHHCCGTCHHTTTTEEBBHHHHHHHHHHTTEEEE
T ss_pred             hHHHHhhcccH---HHHHHHHHHhcCCCCEEEEEEcCCcchhhhHHHhcCCcCccCceeccCCHHHHHHHHHHCCCEEE
Confidence            99999999865   57999999999999999998544310             0        02456778888887654

...

>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]

Probab=99.46  E-value=3.3e-13  Score=133.61  Aligned_cols=107  Identities=24%  Similarity=0.224  Sum_probs=79.6

Q ss_pred             CCCCCCCeEEEECCCCcHHHHHHhhC--C------CEEEEEecCCChhHHH---HHHHh-CC-----CCeeeecccCCCC
Q 046488          321 IKPGEIRIGLDFSIGTGTFAARMREF--N------VTLVSAIINLGAPFNE---MIALR-GL-----VPLYITINQRVPF  383 (480)
Q Consensus       321 l~~g~iR~VLDVGCGtG~fAa~Lae~--g------V~Vv~vd~d~~~~~~~---~iA~r-gl-----ip~~~~~ae~LPF  383 (480)
                      +.++...++|||+||||..|..+.++  .      -.|+..|++  ++++.   +.|++ ++     +....+++|.|||
T Consensus        96 L~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Din--p~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~LpF  173 (296)
T KOG1540|consen   96 LGPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDIN--PHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLPF  173 (296)
T ss_pred             cCCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCC--HHHHHHHHHHHhhcCCCcCCceEEEeCCcccCCC
Confidence            55655678999999999999988765  1      344554444  23333   22222 22     2234567999999


Q ss_pred             CCCccchheecccccCccChhcHHHHHHHHHhcccCCcEEEEeeccCCh
Q 046488          384 FDNTLDLIHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDSFFCAK  432 (480)
Q Consensus       384 pd~SFDlV~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~f~~~~  432 (480)
                      +|++||+.+.++.+.+|.+.+   ++|+|++|||||||+|.+..|-...
T Consensus       174 dd~s~D~yTiafGIRN~th~~---k~l~EAYRVLKpGGrf~cLeFskv~  219 (296)
T KOG1540|consen  174 DDDSFDAYTIAFGIRNVTHIQ---KALREAYRVLKPGGRFSCLEFSKVE  219 (296)
T ss_pred             CCCcceeEEEecceecCCCHH---HHHHHHHHhcCCCcEEEEEEccccc
Confidence            999999999999999999884   6999999999999999988665443

>PLN02396 hexaprenyldihydroxybenzoate methyltransferase

Probab=99.45  E-value=4.3e-13  Score=137.44  Aligned_cols=119  Identities=8%  Similarity=0.035  Sum_probs=90.3

Q ss_pred             CeEEEECCCCcHHHHHHhhCCCEEEEEecCCChhHHHHHHHh-----C---CCCeeeecccCCCCCCCccchheeccccc
Q 046488          327 RIGLDFSIGTGTFAARMREFNVTLVSAIINLGAPFNEMIALR-----G---LVPLYITINQRVPFFDNTLDLIHTTRFLD  398 (480)
Q Consensus       327 R~VLDVGCGtG~fAa~Lae~gV~Vv~vd~d~~~~~~~~iA~r-----g---lip~~~~~ae~LPFpd~SFDlV~ss~vL~  398 (480)
                      .+|||||||+|.++..|++.|..++++|++.  .+.. .|.+     +   .+.+..+.++.+|+++++||+|+|..+++
T Consensus       133 ~~ILDIGCG~G~~s~~La~~g~~V~GID~s~--~~i~-~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~vLe  209 (322)
T PLN02396        133 LKFIDIGCGGGLLSEPLARMGATVTGVDAVD--KNVK-IARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEVIE  209 (322)
T ss_pred             CEEEEeeCCCCHHHHHHHHcCCEEEEEeCCH--HHHH-HHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhHHH
Confidence            4899999999999999999888998888652  2222 2221     1   23455566788999999999999999999


Q ss_pred             CccChhcHHHHHHHHHhcccCCcEEEEeeccCCh---------------------------hhHHHHHHHHHHcCceeeE
Q 046488          399 GWIDFVLLDFILYDWDRVLRPGGLLWIDSFFCAK---------------------------EDMNDYLEVFKMLKYKKHK  451 (480)
Q Consensus       399 h~~d~~~l~~~L~EI~RVLKPGG~fiI~~f~~~~---------------------------edL~~~~~~l~~lGfkkl~  451 (480)
                      |+.++.   .++.++.|+|||||.+++..+....                           -..+++..++++.||+...
T Consensus       210 Hv~d~~---~~L~~l~r~LkPGG~liist~nr~~~~~~~~i~~~eyi~~~lp~gth~~~~f~tp~eL~~lL~~aGf~i~~  286 (322)
T PLN02396        210 HVANPA---EFCKSLSALTIPNGATVLSTINRTMRAYASTIVGAEYILRWLPKGTHQWSSFVTPEELSMILQRASVDVKE  286 (322)
T ss_pred             hcCCHH---HHHHHHHHHcCCCcEEEEEECCcCHHHHHHhhhhHHHHHhcCCCCCcCccCCCCHHHHHHHHHHcCCeEEE
Confidence            998874   6999999999999999987432210                           0124677888999987543

>PRK14103 trans-aconitate 2-methyltransferase; Provisional

Probab=99.44  E-value=4.7e-13  Score=131.13  Aligned_cols=122  Identities=15%  Similarity=0.118  Sum_probs=91.4

Q ss_pred             CeEEEECCCCcHHHHHHhhC--CCEEEEEecCCChhHHHHHHHhCCCCeeeecccCCCCCCCccchheecccccCccChh
Q 046488          327 RIGLDFSIGTGTFAARMREF--NVTLVSAIINLGAPFNEMIALRGLVPLYITINQRVPFFDNTLDLIHTTRFLDGWIDFV  404 (480)
Q Consensus       327 R~VLDVGCGtG~fAa~Lae~--gV~Vv~vd~d~~~~~~~~iA~rglip~~~~~ae~LPFpd~SFDlV~ss~vL~h~~d~~  404 (480)
                      .+|||+|||+|.++..|+++  +..+++++++   +.+...|.+..+.+..++++.++ ++++||+|+++.+++|+.++ 
T Consensus        31 ~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s---~~~~~~a~~~~~~~~~~d~~~~~-~~~~fD~v~~~~~l~~~~d~-  105 (255)
T PRK14103         31 RRVVDLGCGPGNLTRYLARRWPGAVIEALDSS---PEMVAAARERGVDARTGDVRDWK-PKPDTDVVVSNAALQWVPEH-  105 (255)
T ss_pred             CEEEEEcCCCCHHHHHHHHHCCCCEEEEEECC---HHHHHHHHhcCCcEEEcChhhCC-CCCCceEEEEehhhhhCCCH-
Confidence            58999999999999999987  6688888865   33344455556777777777775 67899999999999887765 


Q ss_pred             cHHHHHHHHHhcccCCcEEEEeecc---CC-------------------h---------hhHHHHHHHHHHcCceeeEEE
Q 046488          405 LLDFILYDWDRVLRPGGLLWIDSFF---CA-------------------K---------EDMNDYLEVFKMLKYKKHKWV  453 (480)
Q Consensus       405 ~l~~~L~EI~RVLKPGG~fiI~~f~---~~-------------------~---------edL~~~~~~l~~lGfkkl~W~  453 (480)
                        ..++.+++|+|||||++++..+.   ..                   .         ...+.+.++++..||....|.
T Consensus       106 --~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~v~~~~  183 (255)
T PRK14103        106 --ADLLVRWVDELAPGSWIAVQVPGNFDAPSHAAVRALARREPWAKLLRDIPFRVGAVVQTPAGYAELLTDAGCKVDAWE  183 (255)
T ss_pred             --HHHHHHHHHhCCCCcEEEEEcCCCcCChhHHHHHHHhccCchhHHhcccccccCcCCCCHHHHHHHHHhCCCeEEEEe
Confidence              46999999999999999885210   00                   0         012457788999999866666


Q ss_pred             Ee
Q 046488          454 VV  455 (480)
Q Consensus       454 ~~  455 (480)
                      ..
T Consensus       184 ~~  185 (255)
T PRK14103        184 TT  185 (255)
T ss_pred             ee
Confidence            53

>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase

Probab=99.43  E-value=2e-12  Score=123.88  Aligned_cols=103  Identities=22%  Similarity=0.300  Sum_probs=75.9

Q ss_pred             hcCCCCCCCCeEEEECCCCcHHHHHHhhC---CCEEEEEecCCChhHHH----HHHHhCC--CCeeeecccCCCCCCCcc
Q 046488          318 VLDIKPGEIRIGLDFSIGTGTFAARMREF---NVTLVSAIINLGAPFNE----MIALRGL--VPLYITINQRVPFFDNTL  388 (480)
Q Consensus       318 vL~l~~g~iR~VLDVGCGtG~fAa~Lae~---gV~Vv~vd~d~~~~~~~----~iA~rgl--ip~~~~~ae~LPFpd~SF  388 (480)
                      .+.+.++  .+|||+|||+|.++..+++.   +..+++++++.  .+..    ..+..+.  +....++++.+|+++++|
T Consensus        40 ~l~~~~~--~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~--~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~f  115 (231)
T TIGR02752        40 RMNVQAG--TSALDVCCGTADWSIALAEAVGPEGHVIGLDFSE--NMLSVGRQKVKDAGLHNVELVHGNAMELPFDDNSF  115 (231)
T ss_pred             hcCCCCC--CEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCH--HHHHHHHHHHHhcCCCceEEEEechhcCCCCCCCc
Confidence            3445555  48999999999999999875   35788888652  2222    1222222  334556677889999999


Q ss_pred             chheecccccCccChhcHHHHHHHHHhcccCCcEEEEee
Q 046488          389 DLIHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDS  427 (480)
Q Consensus       389 DlV~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~  427 (480)
                      |+|++..+++++.+.   ..++.|+.|+|||||++++.+
T Consensus       116 D~V~~~~~l~~~~~~---~~~l~~~~~~Lk~gG~l~~~~  151 (231)
T TIGR02752       116 DYVTIGFGLRNVPDY---MQVLREMYRVVKPGGKVVCLE  151 (231)
T ss_pred             cEEEEecccccCCCH---HHHHHHHHHHcCcCeEEEEEE
Confidence            999999988877665   469999999999999998754

MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.

>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional

Probab=99.43  E-value=8.1e-13  Score=135.11  Aligned_cols=122  Identities=17%  Similarity=0.094  Sum_probs=90.0

Q ss_pred             CeEEEECCCCcHHHHHHhhCCC-EEEEEecCCChhHHHH--HHHh-----CCCCeeeecccCCCCCCCccchheeccccc
Q 046488          327 RIGLDFSIGTGTFAARMREFNV-TLVSAIINLGAPFNEM--IALR-----GLVPLYITINQRVPFFDNTLDLIHTTRFLD  398 (480)
Q Consensus       327 R~VLDVGCGtG~fAa~Lae~gV-~Vv~vd~d~~~~~~~~--iA~r-----glip~~~~~ae~LPFpd~SFDlV~ss~vL~  398 (480)
                      ++|||||||+|.++..|++.|. .|++++++.  .+..+  ...+     ..+.+.....+.+|+ +++||+|+|..+++
T Consensus       124 ~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~--~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~-~~~FD~V~s~~vl~  200 (322)
T PRK15068        124 RTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQ--LFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA-LKAFDTVFSMGVLY  200 (322)
T ss_pred             CEEEEeccCCcHHHHHHHHcCCCEEEEEcCCH--HHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC-cCCcCEEEECChhh
Confidence            5899999999999999998864 588888653  23222  1111     123344456788998 89999999999999


Q ss_pred             CccChhcHHHHHHHHHhcccCCcEEEEeeccCC---------h------------hhHHHHHHHHHHcCceeeEEEE
Q 046488          399 GWIDFVLLDFILYDWDRVLRPGGLLWIDSFFCA---------K------------EDMNDYLEVFKMLKYKKHKWVV  454 (480)
Q Consensus       399 h~~d~~~l~~~L~EI~RVLKPGG~fiI~~f~~~---------~------------edL~~~~~~l~~lGfkkl~W~~  454 (480)
                      |+.++   ..+|.+++|+|||||.+++..+...         .            .....+...+++.||+.+....
T Consensus       201 H~~dp---~~~L~~l~~~LkpGG~lvl~~~~i~~~~~~~l~p~~~y~~~~~~~~lps~~~l~~~L~~aGF~~i~~~~  274 (322)
T PRK15068        201 HRRSP---LDHLKQLKDQLVPGGELVLETLVIDGDENTVLVPGDRYAKMRNVYFIPSVPALKNWLERAGFKDVRIVD  274 (322)
T ss_pred             ccCCH---HHHHHHHHHhcCCCcEEEEEEEEecCCCccccCchhHHhcCccceeCCCHHHHHHHHHHcCCceEEEEe
Confidence            98776   4699999999999999998643211         0            0234578899999999887654

>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.42  E-value=1.2e-12  Score=128.50  Aligned_cols=123  Identities=18%  Similarity=0.178  Sum_probs=88.5

Q ss_pred             CCeEEEECCCCcHHHHHHhhCCCEEEEEecCCChhHHHH----HHHhCC---CCeeeecccCC-CCCCCccchheecccc
Q 046488          326 IRIGLDFSIGTGTFAARMREFNVTLVSAIINLGAPFNEM----IALRGL---VPLYITINQRV-PFFDNTLDLIHTTRFL  397 (480)
Q Consensus       326 iR~VLDVGCGtG~fAa~Lae~gV~Vv~vd~d~~~~~~~~----iA~rgl---ip~~~~~ae~L-PFpd~SFDlV~ss~vL  397 (480)
                      ..+|||+|||+|.++..|++.+..+++++++.  .+...    ....+.   +.++.+..+.+ ++++++||+|++..++
T Consensus        45 ~~~vLDiGcG~G~~a~~la~~g~~v~~vD~s~--~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~~fD~V~~~~vl  122 (255)
T PRK11036         45 PLRVLDAGGGEGQTAIKLAELGHQVILCDLSA--EMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETPVDLILFHAVL  122 (255)
T ss_pred             CCEEEEeCCCchHHHHHHHHcCCEEEEEECCH--HHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCCCCCEEEehhHH
Confidence            35899999999999999999998998888753  23222    222222   23445555555 4778999999999999


Q ss_pred             cCccChhcHHHHHHHHHhcccCCcEEEEeeccCCh-------------------------------hhHHHHHHHHHHcC
Q 046488          398 DGWIDFVLLDFILYDWDRVLRPGGLLWIDSFFCAK-------------------------------EDMNDYLEVFKMLK  446 (480)
Q Consensus       398 ~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~f~~~~-------------------------------edL~~~~~~l~~lG  446 (480)
                      +|+.++   ..++.++.|+|||||++++..+....                               -..+.+..+++..|
T Consensus       123 ~~~~~~---~~~l~~~~~~LkpgG~l~i~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~l~~aG  199 (255)
T PRK11036        123 EWVADP---KSVLQTLWSVLRPGGALSLMFYNANGLLMHNMVAGNFDYVQAGMPKRKKRTLSPDYPLDPEQVYQWLEEAG  199 (255)
T ss_pred             HhhCCH---HHHHHHHHHHcCCCeEEEEEEECccHHHHHHHHccChHHHHhcCccccccCCCCCCCCCHHHHHHHHHHCC
Confidence            888776   46999999999999999875322110                               01245677888999


Q ss_pred             ceeeEEE
Q 046488          447 YKKHKWV  453 (480)
Q Consensus       447 fkkl~W~  453 (480)
                      |+.+.+.
T Consensus       200 f~~~~~~  206 (255)
T PRK11036        200 WQIMGKT  206 (255)
T ss_pred             CeEeeee
Confidence            9876544

>PRK10258 biotin biosynthesis protein BioC; Provisional

Probab=99.42  E-value=1.5e-12  Score=126.77  Aligned_cols=98  Identities=19%  Similarity=0.199  Sum_probs=77.0

Q ss_pred             CCeEEEECCCCcHHHHHHhhCCCEEEEEecCCChhHHHHHHHhCC--CCeeeecccCCCCCCCccchheecccccCccCh
Q 046488          326 IRIGLDFSIGTGTFAARMREFNVTLVSAIINLGAPFNEMIALRGL--VPLYITINQRVPFFDNTLDLIHTTRFLDGWIDF  403 (480)
Q Consensus       326 iR~VLDVGCGtG~fAa~Lae~gV~Vv~vd~d~~~~~~~~iA~rgl--ip~~~~~ae~LPFpd~SFDlV~ss~vL~h~~d~  403 (480)
                      ..+|||+|||+|.++..+++.+..++++|++.  .+.. .+.++.  ..+..++.+.+|+++++||+|+++.++++..+.
T Consensus        43 ~~~vLDiGcG~G~~~~~l~~~~~~v~~~D~s~--~~l~-~a~~~~~~~~~~~~d~~~~~~~~~~fD~V~s~~~l~~~~d~  119 (251)
T PRK10258         43 FTHVLDAGCGPGWMSRYWRERGSQVTALDLSP--PMLA-QARQKDAADHYLAGDIESLPLATATFDLAWSNLAVQWCGNL  119 (251)
T ss_pred             CCeEEEeeCCCCHHHHHHHHcCCeEEEEECCH--HHHH-HHHhhCCCCCEEEcCcccCcCCCCcEEEEEECchhhhcCCH
Confidence            45899999999999999998888888888652  3433 333332  345567788899999999999999888655554


Q ss_pred             hcHHHHHHHHHhcccCCcEEEEeecc
Q 046488          404 VLLDFILYDWDRVLRPGGLLWIDSFF  429 (480)
Q Consensus       404 ~~l~~~L~EI~RVLKPGG~fiI~~f~  429 (480)
                         ..++.|+.|+|||||++++..+.
T Consensus       120 ---~~~l~~~~~~Lk~gG~l~~~~~~  142 (251)
T PRK10258        120 ---STALRELYRVVRPGGVVAFTTLV  142 (251)
T ss_pred             ---HHHHHHHHHHcCCCeEEEEEeCC
Confidence               57999999999999999987543

>TIGR00452 methyltransferase, putative

Probab=99.41  E-value=2.2e-12  Score=131.95  Aligned_cols=126  Identities=16%  Similarity=0.097  Sum_probs=88.8

Q ss_pred             CCeEEEECCCCcHHHHHHhhCCC-EEEEEecCCChhHHHHH--HHh-----CCCCeeeecccCCCCCCCccchheecccc
Q 046488          326 IRIGLDFSIGTGTFAARMREFNV-TLVSAIINLGAPFNEMI--ALR-----GLVPLYITINQRVPFFDNTLDLIHTTRFL  397 (480)
Q Consensus       326 iR~VLDVGCGtG~fAa~Lae~gV-~Vv~vd~d~~~~~~~~i--A~r-----glip~~~~~ae~LPFpd~SFDlV~ss~vL  397 (480)
                      .++|||||||+|.++..++..|. .+++++++.  .+..++  +++     ..+.......+.+|+. ++||+|+|+.++
T Consensus       122 g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~--~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~~-~~FD~V~s~gvL  198 (314)
T TIGR00452       122 GRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTV--LFLCQFEAVRKLLDNDKRAILEPLGIEQLHEL-YAFDTVFSMGVL  198 (314)
T ss_pred             CCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCH--HHHHHHHHHHHHhccCCCeEEEECCHHHCCCC-CCcCEEEEcchh
Confidence            35899999999999999988875 578887653  333322  111     1122223346777764 589999999999


Q ss_pred             cCccChhcHHHHHHHHHhcccCCcEEEEeeccC---------Chh------------hHHHHHHHHHHcCceeeEEEEee
Q 046488          398 DGWIDFVLLDFILYDWDRVLRPGGLLWIDSFFC---------AKE------------DMNDYLEVFKMLKYKKHKWVVVP  456 (480)
Q Consensus       398 ~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~f~~---------~~e------------dL~~~~~~l~~lGfkkl~W~~~~  456 (480)
                      +|+.++.   .+|.|++|+|||||.|++..+.-         +.+            ....+...+++.||+.+......
T Consensus       199 ~H~~dp~---~~L~el~r~LkpGG~Lvletl~i~g~~~~~l~p~~ry~k~~nv~flpS~~~L~~~L~~aGF~~V~i~~~~  275 (314)
T TIGR00452       199 YHRKSPL---EHLKQLKHQLVIKGELVLETLVIDGDLNTVLVPKDRYAKMKNVYFIPSVSALKNWLEKVGFENFRILDVL  275 (314)
T ss_pred             hccCCHH---HHHHHHHHhcCCCCEEEEEEEEecCccccccCchHHHHhccccccCCCHHHHHHHHHHCCCeEEEEEecc
Confidence            9998774   59999999999999999863211         000            12456788999999998766544


Q ss_pred             c
Q 046488          457 K  457 (480)
Q Consensus       457 k  457 (480)
                      .
T Consensus       276 ~  276 (314)
T TIGR00452       276 K  276 (314)
T ss_pred             C
Confidence            3

Known examples to date are restricted to the proteobacteria.

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=99.40  E-value=3e-12  Score=135.97  Aligned_cols=120  Identities=21%  Similarity=0.264  Sum_probs=90.6

Q ss_pred             CeEEEECCCCcHHHHHHhhC-CCEEEEEecCCChhHHHHHHHh---C---CCCeeeecccCCCCCCCccchheecccccC
Q 046488          327 RIGLDFSIGTGTFAARMREF-NVTLVSAIINLGAPFNEMIALR---G---LVPLYITINQRVPFFDNTLDLIHTTRFLDG  399 (480)
Q Consensus       327 R~VLDVGCGtG~fAa~Lae~-gV~Vv~vd~d~~~~~~~~iA~r---g---lip~~~~~ae~LPFpd~SFDlV~ss~vL~h  399 (480)
                      .+|||||||+|.++..|++. +..+++++++.  .+.. .|.+   +   .+.+..++...+|+++++||+|+|..+++|
T Consensus       268 ~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~--~~l~-~A~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~s~~~l~h  344 (475)
T PLN02336        268 QKVLDVGCGIGGGDFYMAENFDVHVVGIDLSV--NMIS-FALERAIGRKCSVEFEVADCTKKTYPDNSFDVIYSRDTILH  344 (475)
T ss_pred             CEEEEEeccCCHHHHHHHHhcCCEEEEEECCH--HHHH-HHHHHhhcCCCceEEEEcCcccCCCCCCCEEEEEECCcccc
Confidence            48999999999999999875 77888888762  3322 2222   1   133445667778999999999999999999


Q ss_pred             ccChhcHHHHHHHHHhcccCCcEEEEeeccCCh----h--------------hHHHHHHHHHHcCceeeEE
Q 046488          400 WIDFVLLDFILYDWDRVLRPGGLLWIDSFFCAK----E--------------DMNDYLEVFKMLKYKKHKW  452 (480)
Q Consensus       400 ~~d~~~l~~~L~EI~RVLKPGG~fiI~~f~~~~----e--------------dL~~~~~~l~~lGfkkl~W  452 (480)
                      +.++   ..++.|++|+|||||++++..+....    .              ..+.+.++++..||..+.+
T Consensus       345 ~~d~---~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~aGF~~i~~  412 (475)
T PLN02336        345 IQDK---PALFRSFFKWLKPGGKVLISDYCRSPGTPSPEFAEYIKQRGYDLHDVQAYGQMLKDAGFDDVIA  412 (475)
T ss_pred             cCCH---HHHHHHHHHHcCCCeEEEEEEeccCCCCCcHHHHHHHHhcCCCCCCHHHHHHHHHHCCCeeeee
Confidence            9876   46999999999999999988653321    0              1245778899999987754

>PLN02490 MPBQ/MSBQ methyltransferase

Probab=99.39  E-value=6.8e-12  Score=129.63  Aligned_cols=145  Identities=15%  Similarity=0.059  Sum_probs=100.8

Q ss_pred             CeEEEECCCCcHHHHHHhhC--CCEEEEEecCCChhHHHHHHHh---CCCCeeeecccCCCCCCCccchheecccccCcc
Q 046488          327 RIGLDFSIGTGTFAARMREF--NVTLVSAIINLGAPFNEMIALR---GLVPLYITINQRVPFFDNTLDLIHTTRFLDGWI  401 (480)
Q Consensus       327 R~VLDVGCGtG~fAa~Lae~--gV~Vv~vd~d~~~~~~~~iA~r---glip~~~~~ae~LPFpd~SFDlV~ss~vL~h~~  401 (480)
                      .+|||+|||+|.++..+++.  +..++++|++.  .+.....++   ..+.+..++.+.+|+++++||+|++..+++++.
T Consensus       115 ~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~--~mL~~A~~k~~~~~i~~i~gD~e~lp~~~~sFDvVIs~~~L~~~~  192 (340)
T PLN02490        115 LKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSP--HQLAKAKQKEPLKECKIIEGDAEDLPFPTDYADRYVSAGSIEYWP  192 (340)
T ss_pred             CEEEEEecCCcHHHHHHHHHCCCCEEEEEECCH--HHHHHHHHhhhccCCeEEeccHHhCCCCCCceeEEEEcChhhhCC
Confidence            48999999999999888764  45677777542  333322221   235566677888999999999999999999988


Q ss_pred             ChhcHHHHHHHHHhcccCCcEEEEeeccCC--------------hhhHHHHHHHHHHcCceeeEEEEeeccC-C----CC
Q 046488          402 DFVLLDFILYDWDRVLRPGGLLWIDSFFCA--------------KEDMNDYLEVFKMLKYKKHKWVVVPKRD-K----DD  462 (480)
Q Consensus       402 d~~~l~~~L~EI~RVLKPGG~fiI~~f~~~--------------~edL~~~~~~l~~lGfkkl~W~~~~k~d-~----~~  462 (480)
                      +..   .+++|+.|+|||||++++......              -...+++.+++++.||+.+.+....... +    ..
T Consensus       193 d~~---~~L~e~~rvLkPGG~LvIi~~~~p~~~~~r~~~~~~~~~~t~eEl~~lL~~aGF~~V~i~~i~~~~~~~~~~~~  269 (340)
T PLN02490        193 DPQ---RGIKEAYRVLKIGGKACLIGPVHPTFWLSRFFADVWMLFPKEEEYIEWFTKAGFKDVKLKRIGPKWYRGVRRHG  269 (340)
T ss_pred             CHH---HHHHHHHHhcCCCcEEEEEEecCcchhHHHHhhhhhccCCCHHHHHHHHHHCCCeEEEEEEcChhhcccccccc
Confidence            764   699999999999999987531100              0123567889999999988876532211 0    11


Q ss_pred             cceeEEEEEEeCCC
Q 046488          463 REVFFSAVLEKPPR  476 (480)
Q Consensus       463 ~E~~lsav~qKP~~  476 (480)
                      -.+-.+...+||.+
T Consensus       270 ~~~~~~v~~~k~~~  283 (340)
T PLN02490        270 LIMGCSVTGVKPAS  283 (340)
T ss_pred             ceeeEEEEEecccc
Confidence            12334566788876

>PRK05785 hypothetical protein; Provisional

Probab=99.37  E-value=1.8e-12  Score=126.03  Aligned_cols=88  Identities=17%  Similarity=0.241  Sum_probs=71.3

Q ss_pred             CeEEEECCCCcHHHHHHhhC-CCEEEEEecCCChhHHHHHHHhCCCCeeeecccCCCCCCCccchheecccccCccChhc
Q 046488          327 RIGLDFSIGTGTFAARMREF-NVTLVSAIINLGAPFNEMIALRGLVPLYITINQRVPFFDNTLDLIHTTRFLDGWIDFVL  405 (480)
Q Consensus       327 R~VLDVGCGtG~fAa~Lae~-gV~Vv~vd~d~~~~~~~~iA~rglip~~~~~ae~LPFpd~SFDlV~ss~vL~h~~d~~~  405 (480)
                      .+|||+|||||.++..+++. +..++++|++  ..+.... .+. .....++++.+||++++||+|+++++++|+.+.  
T Consensus        53 ~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S--~~Ml~~a-~~~-~~~~~~d~~~lp~~d~sfD~v~~~~~l~~~~d~--  126 (226)
T PRK05785         53 KKVLDVAAGKGELSYHFKKVFKYYVVALDYA--ENMLKMN-LVA-DDKVVGSFEALPFRDKSFDVVMSSFALHASDNI--  126 (226)
T ss_pred             CeEEEEcCCCCHHHHHHHHhcCCEEEEECCC--HHHHHHH-Hhc-cceEEechhhCCCCCCCEEEEEecChhhccCCH--
Confidence            48999999999999999987 6788888765  3454443 332 245667889999999999999999999888776  


Q ss_pred             HHHHHHHHHhcccCCc
Q 046488          406 LDFILYDWDRVLRPGG  421 (480)
Q Consensus       406 l~~~L~EI~RVLKPGG  421 (480)
                       +.++.|++|||||.+
T Consensus       127 -~~~l~e~~RvLkp~~  141 (226)
T PRK05785        127 -EKVIAEFTRVSRKQV  141 (226)
T ss_pred             -HHHHHHHHHHhcCce
Confidence             469999999999953

>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed

Probab=99.36  E-value=7.3e-12  Score=123.55  Aligned_cols=127  Identities=20%  Similarity=0.242  Sum_probs=88.3

Q ss_pred             CCCCCCCCeEEEECCCCcHHHHHHhhC-C--CEEEEEecCCChhHHHHH----HHhCC--CCeeeecccCCCCCCCccch
Q 046488          320 DIKPGEIRIGLDFSIGTGTFAARMREF-N--VTLVSAIINLGAPFNEMI----ALRGL--VPLYITINQRVPFFDNTLDL  390 (480)
Q Consensus       320 ~l~~g~iR~VLDVGCGtG~fAa~Lae~-g--V~Vv~vd~d~~~~~~~~i----A~rgl--ip~~~~~ae~LPFpd~SFDl  390 (480)
                      .+.++.  +|||+|||+|..+..++.. +  ..+++++++.  .+....    +..+.  +.+..+..+.+|+++++||+
T Consensus        74 ~~~~g~--~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~--~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~~~~~fD~  149 (272)
T PRK11873         74 ELKPGE--TVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTP--EMLAKARANARKAGYTNVEFRLGEIEALPVADNSVDV  149 (272)
T ss_pred             cCCCCC--EEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCH--HHHHHHHHHHHHcCCCCEEEEEcchhhCCCCCCceeE
Confidence            345554  8999999999987766653 3  3577777652  232221    11221  23345667889999999999


Q ss_pred             heecccccCccChhcHHHHHHHHHhcccCCcEEEEeeccCCh--------------------hhHHHHHHHHHHcCceee
Q 046488          391 IHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDSFFCAK--------------------EDMNDYLEVFKMLKYKKH  450 (480)
Q Consensus       391 V~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~f~~~~--------------------edL~~~~~~l~~lGfkkl  450 (480)
                      |++..+++++.+.   ..++.|+.|+|||||+|++.++....                    ...+++.++++..||..+
T Consensus       150 Vi~~~v~~~~~d~---~~~l~~~~r~LkpGG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~aGf~~v  226 (272)
T PRK11873        150 IISNCVINLSPDK---ERVFKEAFRVLKPGGRFAISDVVLRGELPEEIRNDAELYAGCVAGALQEEEYLAMLAEAGFVDI  226 (272)
T ss_pred             EEEcCcccCCCCH---HHHHHHHHHHcCCCcEEEEEEeeccCCCCHHHHHhHHHHhccccCCCCHHHHHHHHHHCCCCce
Confidence            9999888777665   46999999999999999997543221                    112457788899999876


Q ss_pred             EEE
Q 046488          451 KWV  453 (480)
Q Consensus       451 ~W~  453 (480)
                      ...
T Consensus       227 ~i~  229 (272)
T PRK11873        227 TIQ  229 (272)
T ss_pred             EEE
Confidence            543

>PRK11207 tellurite resistance protein TehB; Provisional

Probab=99.34  E-value=5e-12  Score=120.09  Aligned_cols=109  Identities=17%  Similarity=0.177  Sum_probs=75.5

Q ss_pred             HHHhcCCCCCCCCeEEEECCCCcHHHHHHhhCCCEEEEEecCCCh--hHHHHHHHhCC--CCeeeecccCCCCCCCccch
Q 046488          315 IPEVLDIKPGEIRIGLDFSIGTGTFAARMREFNVTLVSAIINLGA--PFNEMIALRGL--VPLYITINQRVPFFDNTLDL  390 (480)
Q Consensus       315 I~~vL~l~~g~iR~VLDVGCGtG~fAa~Lae~gV~Vv~vd~d~~~--~~~~~iA~rgl--ip~~~~~ae~LPFpd~SFDl  390 (480)
                      +-+.++..++  .+|||+|||+|.++..|+++|..++++|++...  .+...++..+.  +.....+...+++ +++||+
T Consensus        22 l~~~l~~~~~--~~vLDiGcG~G~~a~~La~~g~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~~-~~~fD~   98 (197)
T PRK11207         22 VLEAVKVVKP--GKTLDLGCGNGRNSLYLAANGFDVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLTF-DGEYDF   98 (197)
T ss_pred             HHHhcccCCC--CcEEEECCCCCHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCCc-CCCcCE
Confidence            3345554443  379999999999999999999888888875321  11112233332  2334445556666 467999


Q ss_pred             heecccccCccChhcHHHHHHHHHhcccCCcEEEEee
Q 046488          391 IHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDS  427 (480)
Q Consensus       391 V~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~  427 (480)
                      |+|..+++++.+ ..+..++.++.|+|||||++++..
T Consensus        99 I~~~~~~~~~~~-~~~~~~l~~i~~~LkpgG~~~~~~  134 (197)
T PRK11207         99 ILSTVVLMFLEA-KTIPGLIANMQRCTKPGGYNLIVA  134 (197)
T ss_pred             EEEecchhhCCH-HHHHHHHHHHHHHcCCCcEEEEEE
Confidence            999998876653 334789999999999999976543

>TIGR00477 tehB tellurite resistance protein TehB

Probab=99.30  E-value=1.4e-11  Score=116.90  Aligned_cols=107  Identities=16%  Similarity=0.046  Sum_probs=74.1

Q ss_pred             HhcCCCCCCCCeEEEECCCCcHHHHHHhhCCCEEEEEecCCChhHHH---HHHHhCCCC--eeeecccCCCCCCCccchh
Q 046488          317 EVLDIKPGEIRIGLDFSIGTGTFAARMREFNVTLVSAIINLGAPFNE---MIALRGLVP--LYITINQRVPFFDNTLDLI  391 (480)
Q Consensus       317 ~vL~l~~g~iR~VLDVGCGtG~fAa~Lae~gV~Vv~vd~d~~~~~~~---~iA~rglip--~~~~~ae~LPFpd~SFDlV  391 (480)
                      +.+++.++  .+|||+|||+|.++..|+++|..|+++|++.  .+..   +.+.+..++  ....+...++++ ++||+|
T Consensus        24 ~~~~~~~~--~~vLDiGcG~G~~a~~la~~g~~V~~iD~s~--~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~I   98 (195)
T TIGR00477        24 EAVKTVAP--CKTLDLGCGQGRNSLYLSLAGYDVRAWDHNP--ASIASVLDMKARENLPLRTDAYDINAAALN-EDYDFI   98 (195)
T ss_pred             HHhccCCC--CcEEEeCCCCCHHHHHHHHCCCeEEEEECCH--HHHHHHHHHHHHhCCCceeEeccchhcccc-CCCCEE
Confidence            44444333  3799999999999999999998898888763  2222   122222333  223334455654 689999


Q ss_pred             eecccccCccChhcHHHHHHHHHhcccCCcEEEEeecc
Q 046488          392 HTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDSFF  429 (480)
Q Consensus       392 ~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~f~  429 (480)
                      +++.+++++... .+..++.+++|+|||||++++..|.
T Consensus        99 ~~~~~~~~~~~~-~~~~~l~~~~~~LkpgG~lli~~~~  135 (195)
T TIGR00477        99 FSTVVFMFLQAG-RVPEIIANMQAHTRPGGYNLIVAAM  135 (195)
T ss_pred             EEecccccCCHH-HHHHHHHHHHHHhCCCcEEEEEEec
Confidence            999988776543 3467999999999999997766543

Part of a tellurite-reducing operon tehA and tehB

>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes

Probab=99.28  E-value=3.1e-11  Score=115.13  Aligned_cols=122  Identities=21%  Similarity=0.247  Sum_probs=85.6

Q ss_pred             eEEEECCCCcHHHHHHhhC--CCEEEEEecCCCh--hHHHHHHHhCC---CCeeeecccCCCCCCCccchheecccccCc
Q 046488          328 IGLDFSIGTGTFAARMREF--NVTLVSAIINLGA--PFNEMIALRGL---VPLYITINQRVPFFDNTLDLIHTTRFLDGW  400 (480)
Q Consensus       328 ~VLDVGCGtG~fAa~Lae~--gV~Vv~vd~d~~~--~~~~~iA~rgl---ip~~~~~ae~LPFpd~SFDlV~ss~vL~h~  400 (480)
                      +|||||||+|.++..+++.  +..+++++++...  .+...+...+.   +.+...+....|++ ++||+|++..+++|+
T Consensus         2 ~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~-~~fD~I~~~~~l~~~   80 (224)
T smart00828        2 RVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFP-DTYDLVFGFEVIHHI   80 (224)
T ss_pred             eEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCC-CCCCEeehHHHHHhC
Confidence            6999999999999999876  4678888765211  11112222222   23444555555664 589999999999988


Q ss_pred             cChhcHHHHHHHHHhcccCCcEEEEeeccCC----h---------hhHHHHHHHHHHcCceeeEEE
Q 046488          401 IDFVLLDFILYDWDRVLRPGGLLWIDSFFCA----K---------EDMNDYLEVFKMLKYKKHKWV  453 (480)
Q Consensus       401 ~d~~~l~~~L~EI~RVLKPGG~fiI~~f~~~----~---------edL~~~~~~l~~lGfkkl~W~  453 (480)
                      .+.   ..++.++.|+|||||++++..+...    .         .....|.+.+++.||+.+...
T Consensus        81 ~~~---~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~~Gf~~~~~~  143 (224)
T smart00828       81 KDK---MDLFSNISRHLKDGGHLVLADFIANLLSAIEHEETTSYLVTREEWAELLARNNLRVVEGV  143 (224)
T ss_pred             CCH---HHHHHHHHHHcCCCCEEEEEEcccccCccccccccccccCCHHHHHHHHHHCCCeEEEeE
Confidence            765   5699999999999999998764321    0         113567889999999877644

>PRK08317 hypothetical protein; Provisional

Probab=99.28  E-value=6.3e-11  Score=111.76  Aligned_cols=103  Identities=26%  Similarity=0.315  Sum_probs=76.3

Q ss_pred             HhcCCCCCCCCeEEEECCCCcHHHHHHhhC---CCEEEEEecCCChhHHHHHHHhC------CCCeeeecccCCCCCCCc
Q 046488          317 EVLDIKPGEIRIGLDFSIGTGTFAARMREF---NVTLVSAIINLGAPFNEMIALRG------LVPLYITINQRVPFFDNT  387 (480)
Q Consensus       317 ~vL~l~~g~iR~VLDVGCGtG~fAa~Lae~---gV~Vv~vd~d~~~~~~~~iA~rg------lip~~~~~ae~LPFpd~S  387 (480)
                      +.+++.++  .+|||+|||+|.++..++++   +..+++++++.  .+ ...+.+.      .+.+...+.+.+|+++++
T Consensus        13 ~~~~~~~~--~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~--~~-~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~   87 (241)
T PRK08317         13 ELLAVQPG--DRVLDVGCGPGNDARELARRVGPEGRVVGIDRSE--AM-LALAKERAAGLGPNVEFVRGDADGLPFPDGS   87 (241)
T ss_pred             HHcCCCCC--CEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCH--HH-HHHHHHHhhCCCCceEEEecccccCCCCCCC
Confidence            34455544  48999999999999999875   24677877652  22 2222221      133344557778899999


Q ss_pred             cchheecccccCccChhcHHHHHHHHHhcccCCcEEEEee
Q 046488          388 LDLIHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDS  427 (480)
Q Consensus       388 FDlV~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~  427 (480)
                      ||+|++..+++|+.+.   ..++.++.++|||||++++..
T Consensus        88 ~D~v~~~~~~~~~~~~---~~~l~~~~~~L~~gG~l~~~~  124 (241)
T PRK08317         88 FDAVRSDRVLQHLEDP---ARALAEIARVLRPGGRVVVLD  124 (241)
T ss_pred             ceEEEEechhhccCCH---HHHHHHHHHHhcCCcEEEEEe
Confidence            9999999999998876   469999999999999998763

>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4)

Probab=99.27  E-value=2.6e-11  Score=121.74  Aligned_cols=132  Identities=19%  Similarity=0.215  Sum_probs=81.5

Q ss_pred             HhcCCCCCCCCeEEEECCCCcHHHHHHhhC-CCEEEEEecCCChh--HHHHHHHhCCC---CeeeecccCCCCCCCccch
Q 046488          317 EVLDIKPGEIRIGLDFSIGTGTFAARMREF-NVTLVSAIINLGAP--FNEMIALRGLV---PLYITINQRVPFFDNTLDL  390 (480)
Q Consensus       317 ~vL~l~~g~iR~VLDVGCGtG~fAa~Lae~-gV~Vv~vd~d~~~~--~~~~iA~rgli---p~~~~~ae~LPFpd~SFDl  390 (480)
                      +.+++++|.  +|||||||.|.++.+++++ |+.|++++++....  +..+++..|+.   .+...+...++.   +||.
T Consensus        56 ~~~~l~~G~--~vLDiGcGwG~~~~~~a~~~g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~~---~fD~  130 (273)
T PF02353_consen   56 EKLGLKPGD--RVLDIGCGWGGLAIYAAERYGCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLPG---KFDR  130 (273)
T ss_dssp             TTTT--TT---EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG------S-SE
T ss_pred             HHhCCCCCC--EEEEeCCCccHHHHHHHHHcCcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccCC---CCCE
Confidence            455788886  8999999999999999998 99999998763211  12233333432   233333344443   9999


Q ss_pred             heecccccCccChhcHHHHHHHHHhcccCCcEEEEeeccCCh------------------------hhHHHHHHHHHHcC
Q 046488          391 IHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDSFFCAK------------------------EDMNDYLEVFKMLK  446 (480)
Q Consensus       391 V~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~f~~~~------------------------edL~~~~~~l~~lG  446 (480)
                      |++..++.|+.... ...++..+.|+|||||++++..+....                        ..+..+...++..|
T Consensus       131 IvSi~~~Ehvg~~~-~~~~f~~~~~~LkpgG~~~lq~i~~~~~~~~~~~~~~~~~i~kyiFPgg~lps~~~~~~~~~~~~  209 (273)
T PF02353_consen  131 IVSIEMFEHVGRKN-YPAFFRKISRLLKPGGRLVLQTITHRDPPYHAERRSSSDFIRKYIFPGGYLPSLSEILRAAEDAG  209 (273)
T ss_dssp             EEEESEGGGTCGGG-HHHHHHHHHHHSETTEEEEEEEEEE--HHHHHCTTCCCHHHHHHTSTTS---BHHHHHHHHHHTT
T ss_pred             EEEEechhhcChhH-HHHHHHHHHHhcCCCcEEEEEecccccccchhhcCCCceEEEEeeCCCCCCCCHHHHHHHHhcCC
Confidence            99999999996432 467999999999999999876322111                        01234556677888


Q ss_pred             ceeeEEEE
Q 046488          447 YKKHKWVV  454 (480)
Q Consensus       447 fkkl~W~~  454 (480)
                      |+...|..
T Consensus       210 l~v~~~~~  217 (273)
T PF02353_consen  210 LEVEDVEN  217 (273)
T ss_dssp             -EEEEEEE
T ss_pred             EEEEEEEE
Confidence            88777654

All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....

>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase

Probab=99.26  E-value=1e-10  Score=112.34  Aligned_cols=97  Identities=18%  Similarity=0.060  Sum_probs=74.3

Q ss_pred             CeEEEECCCCcHHHHHHhhC--CCEEEEEecCCChhHHHHHHHhC--CCCeeeecccCCCCCCCccchheecccccCccC
Q 046488          327 RIGLDFSIGTGTFAARMREF--NVTLVSAIINLGAPFNEMIALRG--LVPLYITINQRVPFFDNTLDLIHTTRFLDGWID  402 (480)
Q Consensus       327 R~VLDVGCGtG~fAa~Lae~--gV~Vv~vd~d~~~~~~~~iA~rg--lip~~~~~ae~LPFpd~SFDlV~ss~vL~h~~d  402 (480)
                      .+|||+|||+|.++..|++.  +..+++++++.  .+ .+.|++.  .+.+..+.+.. |+++++||+|++..+++|+. 
T Consensus        45 ~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~--~~-l~~A~~~~~~~~~~~~d~~~-~~~~~sfD~V~~~~vL~hl~-  119 (204)
T TIGR03587        45 ASILELGANIGMNLAALKRLLPFKHIYGVEINE--YA-VEKAKAYLPNINIIQGSLFD-PFKDNFFDLVLTKGVLIHIN-  119 (204)
T ss_pred             CcEEEEecCCCHHHHHHHHhCCCCeEEEEECCH--HH-HHHHHhhCCCCcEEEeeccC-CCCCCCEEEEEECChhhhCC-
Confidence            47999999999999999876  67888888662  33 3344432  24455566555 89999999999999999985 


Q ss_pred             hhcHHHHHHHHHhcccCCcEEEEeeccC
Q 046488          403 FVLLDFILYDWDRVLRPGGLLWIDSFFC  430 (480)
Q Consensus       403 ~~~l~~~L~EI~RVLKPGG~fiI~~f~~  430 (480)
                      ++.+..++.|+.|++  +++++|..++.
T Consensus       120 p~~~~~~l~el~r~~--~~~v~i~e~~~  145 (204)
T TIGR03587       120 PDNLPTAYRELYRCS--NRYILIAEYYN  145 (204)
T ss_pred             HHHHHHHHHHHHhhc--CcEEEEEEeeC
Confidence            445678999999998  57888876654

Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme

>TIGR02072 BioC biotin biosynthesis protein BioC

Probab=99.25  E-value=3.2e-11  Score=114.11  Aligned_cols=96  Identities=26%  Similarity=0.315  Sum_probs=73.9

Q ss_pred             CeEEEECCCCcHHHHHHhhCC--CEEEEEecCCChhHHHHHHHhC---CCCeeeecccCCCCCCCccchheecccccCcc
Q 046488          327 RIGLDFSIGTGTFAARMREFN--VTLVSAIINLGAPFNEMIALRG---LVPLYITINQRVPFFDNTLDLIHTTRFLDGWI  401 (480)
Q Consensus       327 R~VLDVGCGtG~fAa~Lae~g--V~Vv~vd~d~~~~~~~~iA~rg---lip~~~~~ae~LPFpd~SFDlV~ss~vL~h~~  401 (480)
                      .+|||+|||+|.++..+++.+  ..+++++++.  .+. ..+.+.   .+....++.+.+|+++++||+|++..++++..
T Consensus        36 ~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~--~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~vi~~~~l~~~~  112 (240)
T TIGR02072        36 ASVLDIGCGTGYLTRALLKRFPQAEFIALDISA--GML-AQAKTKLSENVQFICGDAEKLPLEDSSFDLIVSNLALQWCD  112 (240)
T ss_pred             CeEEEECCCccHHHHHHHHhCCCCcEEEEeChH--HHH-HHHHHhcCCCCeEEecchhhCCCCCCceeEEEEhhhhhhcc
Confidence            579999999999999998874  4557777542  232 233332   24455667788899999999999999998776


Q ss_pred             ChhcHHHHHHHHHhcccCCcEEEEeec
Q 046488          402 DFVLLDFILYDWDRVLRPGGLLWIDSF  428 (480)
Q Consensus       402 d~~~l~~~L~EI~RVLKPGG~fiI~~f  428 (480)
                      +.   ..++.++.|+|||||++++..+
T Consensus       113 ~~---~~~l~~~~~~L~~~G~l~~~~~  136 (240)
T TIGR02072       113 DL---SQALSELARVLKPGGLLAFSTF  136 (240)
T ss_pred             CH---HHHHHHHHHHcCCCcEEEEEeC
Confidence            65   4699999999999999998754

This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.

>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional

Probab=99.24  E-value=4.1e-11  Score=117.49  Aligned_cols=98  Identities=15%  Similarity=0.060  Sum_probs=71.7

Q ss_pred             CeEEEECCCCcHHHHHHhh----CCCEEEEEecCCChhHHHH----HHHhC---CCCeeeecccCCCCCCCccchheecc
Q 046488          327 RIGLDFSIGTGTFAARMRE----FNVTLVSAIINLGAPFNEM----IALRG---LVPLYITINQRVPFFDNTLDLIHTTR  395 (480)
Q Consensus       327 R~VLDVGCGtG~fAa~Lae----~gV~Vv~vd~d~~~~~~~~----iA~rg---lip~~~~~ae~LPFpd~SFDlV~ss~  395 (480)
                      .+|||+|||+|..+..+++    .+..+++++++.  .+.+.    ++..+   .+.+..+++..+|++  .+|+|++..
T Consensus        58 ~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~--~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~--~~D~vv~~~  133 (247)
T PRK15451         58 TQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSP--AMIERCRRHIDAYKAPTPVDVIEGDIRDIAIE--NASMVVLNF  133 (247)
T ss_pred             CEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCH--HHHHHHHHHHHhcCCCCCeEEEeCChhhCCCC--CCCEEehhh
Confidence            4799999999999988876    257888888652  33332    22212   244555667777765  499999999


Q ss_pred             cccCccChhcHHHHHHHHHhcccCCcEEEEeecc
Q 046488          396 FLDGWIDFVLLDFILYDWDRVLRPGGLLWIDSFF  429 (480)
Q Consensus       396 vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~f~  429 (480)
                      +++++.+.. ...++.+++|+|||||.|++.+.+
T Consensus       134 ~l~~l~~~~-~~~~l~~i~~~LkpGG~l~l~e~~  166 (247)
T PRK15451        134 TLQFLEPSE-RQALLDKIYQGLNPGGALVLSEKF  166 (247)
T ss_pred             HHHhCCHHH-HHHHHHHHHHhcCCCCEEEEEEec
Confidence            998876443 367999999999999999998643

>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A

Probab=99.24  E-value=3e-11  Score=102.35  Aligned_cols=97  Identities=24%  Similarity=0.247  Sum_probs=68.1

Q ss_pred             CeEEEECCCCcHHHHHHhh--CCCEEEEEecCCChhHHH----HHHHhCC---CCeeeecc-cCCCCCCCccchheecc-
Q 046488          327 RIGLDFSIGTGTFAARMRE--FNVTLVSAIINLGAPFNE----MIALRGL---VPLYITIN-QRVPFFDNTLDLIHTTR-  395 (480)
Q Consensus       327 R~VLDVGCGtG~fAa~Lae--~gV~Vv~vd~d~~~~~~~----~iA~rgl---ip~~~~~a-e~LPFpd~SFDlV~ss~-  395 (480)
                      .+|||+|||+|.++..+++  .+..+++++++.  .+.+    .+...+.   +.+..++. .... ..+.||+|++.. 
T Consensus         3 ~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~--~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~-~~~~~D~v~~~~~   79 (112)
T PF12847_consen    3 GRVLDLGCGTGRLSIALARLFPGARVVGVDISP--EMLEIARERAAEEGLSDRITFVQGDAEFDPD-FLEPFDLVICSGF   79 (112)
T ss_dssp             CEEEEETTTTSHHHHHHHHHHTTSEEEEEESSH--HHHHHHHHHHHHTTTTTTEEEEESCCHGGTT-TSSCEEEEEECSG
T ss_pred             CEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCH--HHHHHHHHHHHhcCCCCCeEEEECccccCcc-cCCCCCEEEECCC
Confidence            3799999999999999999  689999998762  2222    2212222   33444545 2333 344599999988 


Q ss_pred             cccCccChhcHHHHHHHHHhcccCCcEEEEe
Q 046488          396 FLDGWIDFVLLDFILYDWDRVLRPGGLLWID  426 (480)
Q Consensus       396 vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~  426 (480)
                      +++++.+.+....++.++.+.|||||++++.
T Consensus        80 ~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~  110 (112)
T PF12847_consen   80 TLHFLLPLDERRRVLERIRRLLKPGGRLVIN  110 (112)
T ss_dssp             SGGGCCHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             ccccccchhHHHHHHHHHHHhcCCCcEEEEE
Confidence            5554543333477999999999999999985

...

>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed

Probab=99.24  E-value=3.3e-10  Score=107.59  Aligned_cols=97  Identities=28%  Similarity=0.296  Sum_probs=72.0

Q ss_pred             CeEEEECCCCcHHHHHHhhCC---CEEEEEecCCChhHHHH----HHHh---CCCCeeeecccCCCCCCCccchheeccc
Q 046488          327 RIGLDFSIGTGTFAARMREFN---VTLVSAIINLGAPFNEM----IALR---GLVPLYITINQRVPFFDNTLDLIHTTRF  396 (480)
Q Consensus       327 R~VLDVGCGtG~fAa~Lae~g---V~Vv~vd~d~~~~~~~~----iA~r---glip~~~~~ae~LPFpd~SFDlV~ss~v  396 (480)
                      .+|||+|||+|.++..++..+   ..+++++++.  .+...    +...   ..+.+...+...+++.+++||+|+++++
T Consensus        53 ~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~--~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~I~~~~~  130 (239)
T PRK00216         53 DKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSE--GMLAVGREKLRDLGLSGNVEFVQGDAEALPFPDNSFDAVTIAFG  130 (239)
T ss_pred             CeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCH--HHHHHHHHhhcccccccCeEEEecccccCCCCCCCccEEEEecc
Confidence            479999999999999998764   6788887652  22221    1111   1233445556777888899999999999


Q ss_pred             ccCccChhcHHHHHHHHHhcccCCcEEEEeec
Q 046488          397 LDGWIDFVLLDFILYDWDRVLRPGGLLWIDSF  428 (480)
Q Consensus       397 L~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~f  428 (480)
                      ++++.+.   ..++.++.++|+|||.+++..+
T Consensus       131 l~~~~~~---~~~l~~~~~~L~~gG~li~~~~  159 (239)
T PRK00216        131 LRNVPDI---DKALREMYRVLKPGGRLVILEF  159 (239)
T ss_pred             cccCCCH---HHHHHHHHHhccCCcEEEEEEe
Confidence            9888765   4689999999999999987643

>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins

Probab=99.23  E-value=7.3e-11  Score=113.06  Aligned_cols=124  Identities=19%  Similarity=0.268  Sum_probs=93.8

Q ss_pred             CCCCCCCeEEEECCCCcHHHHHHhh-CCCEEEEEecCCChhHHHHHHHhCCCCeeeec-ccCCC-CCCCccchheecccc
Q 046488          321 IKPGEIRIGLDFSIGTGTFAARMRE-FNVTLVSAIINLGAPFNEMIALRGLVPLYITI-NQRVP-FFDNTLDLIHTTRFL  397 (480)
Q Consensus       321 l~~g~iR~VLDVGCGtG~fAa~Lae-~gV~Vv~vd~d~~~~~~~~iA~rglip~~~~~-ae~LP-Fpd~SFDlV~ss~vL  397 (480)
                      +.+|+  +|||+|||.|.+.++|.+ +++.+.+++++   +.....+.++++++++++ .+.|+ |+|++||.|+.+.+|
T Consensus        11 I~pgs--rVLDLGCGdG~LL~~L~~~k~v~g~GvEid---~~~v~~cv~rGv~Viq~Dld~gL~~f~d~sFD~VIlsqtL   85 (193)
T PF07021_consen   11 IEPGS--RVLDLGCGDGELLAYLKDEKQVDGYGVEID---PDNVAACVARGVSVIQGDLDEGLADFPDQSFDYVILSQTL   85 (193)
T ss_pred             cCCCC--EEEecCCCchHHHHHHHHhcCCeEEEEecC---HHHHHHHHHcCCCEEECCHHHhHhhCCCCCccEEehHhHH
Confidence            34564  899999999999999987 59999999877   344455566778888876 45564 999999999999999


Q ss_pred             cCccChhcHHHHHHHHHhcccCCcEEEEe---------------------------eccCChh----hHHHHHHHHHHcC
Q 046488          398 DGWIDFVLLDFILYDWDRVLRPGGLLWID---------------------------SFFCAKE----DMNDYLEVFKMLK  446 (480)
Q Consensus       398 ~h~~d~~~l~~~L~EI~RVLKPGG~fiI~---------------------------~f~~~~e----dL~~~~~~l~~lG  446 (480)
                      .++..+.   .+|.||.||   |...+++                           .|+.++.    .++++.++.+..|
T Consensus        86 Q~~~~P~---~vL~EmlRV---gr~~IVsFPNFg~W~~R~~l~~~GrmPvt~~lPy~WYdTPNih~~Ti~DFe~lc~~~~  159 (193)
T PF07021_consen   86 QAVRRPD---EVLEEMLRV---GRRAIVSFPNFGHWRNRLQLLLRGRMPVTKALPYEWYDTPNIHLCTIKDFEDLCRELG  159 (193)
T ss_pred             HhHhHHH---HHHHHHHHh---cCeEEEEecChHHHHHHHHHHhcCCCCCCCCCCCcccCCCCcccccHHHHHHHHHHCC
Confidence            9998874   699999888   4466665                           1332221    2467888999999


Q ss_pred             ceeeEEEEe
Q 046488          447 YKKHKWVVV  455 (480)
Q Consensus       447 fkkl~W~~~  455 (480)
                      ++-+.....
T Consensus       160 i~I~~~~~~  168 (193)
T PF07021_consen  160 IRIEERVFL  168 (193)
T ss_pred             CEEEEEEEE
Confidence            887765443

Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].

>PRK12335 tellurite resistance protein TehB; Provisional

Probab=99.23  E-value=5.6e-11  Score=119.08  Aligned_cols=97  Identities=18%  Similarity=0.127  Sum_probs=69.8

Q ss_pred             eEEEECCCCcHHHHHHhhCCCEEEEEecCCChh-HHHHHHHhCCCCe--eeecccCCCCCCCccchheecccccCccChh
Q 046488          328 IGLDFSIGTGTFAARMREFNVTLVSAIINLGAP-FNEMIALRGLVPL--YITINQRVPFFDNTLDLIHTTRFLDGWIDFV  404 (480)
Q Consensus       328 ~VLDVGCGtG~fAa~Lae~gV~Vv~vd~d~~~~-~~~~iA~rglip~--~~~~ae~LPFpd~SFDlV~ss~vL~h~~d~~  404 (480)
                      +|||+|||+|.++..|+++|..++++|.+..+. ...+.+.+..+.+  ...+....++ +++||+|++..+++++.. .
T Consensus       123 ~vLDlGcG~G~~~~~la~~g~~V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~~~~~~-~~~fD~I~~~~vl~~l~~-~  200 (287)
T PRK12335        123 KALDLGCGQGRNSLYLALLGFDVTAVDINQQSLENLQEIAEKENLNIRTGLYDINSASI-QEEYDFILSTVVLMFLNR-E  200 (287)
T ss_pred             CEEEeCCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCceEEEEechhcccc-cCCccEEEEcchhhhCCH-H
Confidence            799999999999999999999998888753211 1122233322232  3333444444 789999999999887653 3


Q ss_pred             cHHHHHHHHHhcccCCcEEEEe
Q 046488          405 LLDFILYDWDRVLRPGGLLWID  426 (480)
Q Consensus       405 ~l~~~L~EI~RVLKPGG~fiI~  426 (480)
                      .+..++.++.|+|||||++++.
T Consensus       201 ~~~~~l~~~~~~LkpgG~~l~v  222 (287)
T PRK12335        201 RIPAIIKNMQEHTNPGGYNLIV  222 (287)
T ss_pred             HHHHHHHHHHHhcCCCcEEEEE
Confidence            3578999999999999997664

>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]

Probab=99.22  E-value=1.3e-11  Score=121.55  Aligned_cols=98  Identities=15%  Similarity=0.225  Sum_probs=77.0

Q ss_pred             CeEEEECCCCcHHHHHHhhCCCEEEEEecCCChh-HHHHHHHhCCCC--eeeecccCCCCCCCccchheecccccCccCh
Q 046488          327 RIGLDFSIGTGTFAARMREFNVTLVSAIINLGAP-FNEMIALRGLVP--LYITINQRVPFFDNTLDLIHTTRFLDGWIDF  403 (480)
Q Consensus       327 R~VLDVGCGtG~fAa~Lae~gV~Vv~vd~d~~~~-~~~~iA~rglip--~~~~~ae~LPFpd~SFDlV~ss~vL~h~~d~  403 (480)
                      .+|||||||.|.++..||+.|..|+++|++.... .....|.+.++.  .....++.|-...++||+|+|+.+++|++++
T Consensus        61 ~~vLDvGCGgG~Lse~mAr~Ga~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cmEVlEHv~dp  140 (243)
T COG2227          61 LRVLDVGCGGGILSEPLARLGASVTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLASAGGQFDVVTCMEVLEHVPDP  140 (243)
T ss_pred             CeEEEecCCccHhhHHHHHCCCeeEEecCChHHHHHHHHhhhhccccccchhhhHHHHHhcCCCccEEEEhhHHHccCCH
Confidence            4799999999999999999999999988763211 111223444443  3334467777767999999999999999998


Q ss_pred             hcHHHHHHHHHhcccCCcEEEEee
Q 046488          404 VLLDFILYDWDRVLRPGGLLWIDS  427 (480)
Q Consensus       404 ~~l~~~L~EI~RVLKPGG~fiI~~  427 (480)
                      .   .+++++.+.+||||.++++.
T Consensus       141 ~---~~~~~c~~lvkP~G~lf~ST  161 (243)
T COG2227         141 E---SFLRACAKLVKPGGILFLST  161 (243)
T ss_pred             H---HHHHHHHHHcCCCcEEEEec
Confidence            5   59999999999999999984

>PRK01683 trans-aconitate 2-methyltransferase; Provisional

Probab=99.22  E-value=6e-11  Score=115.86  Aligned_cols=93  Identities=20%  Similarity=0.146  Sum_probs=70.7

Q ss_pred             CeEEEECCCCcHHHHHHhhC--CCEEEEEecCCChhHHHHHHHhCC--CCeeeecccCCCCCCCccchheecccccCccC
Q 046488          327 RIGLDFSIGTGTFAARMREF--NVTLVSAIINLGAPFNEMIALRGL--VPLYITINQRVPFFDNTLDLIHTTRFLDGWID  402 (480)
Q Consensus       327 R~VLDVGCGtG~fAa~Lae~--gV~Vv~vd~d~~~~~~~~iA~rgl--ip~~~~~ae~LPFpd~SFDlV~ss~vL~h~~d  402 (480)
                      .+|||+|||+|.++..+++.  +..+++++++   +.....+.+..  +.+..++.+.++ ++++||+|+++.+++++.+
T Consensus        33 ~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s---~~~i~~a~~~~~~~~~~~~d~~~~~-~~~~fD~v~~~~~l~~~~d  108 (258)
T PRK01683         33 RYVVDLGCGPGNSTELLVERWPAARITGIDSS---PAMLAEARSRLPDCQFVEADIASWQ-PPQALDLIFANASLQWLPD  108 (258)
T ss_pred             CEEEEEcccCCHHHHHHHHHCCCCEEEEEECC---HHHHHHHHHhCCCCeEEECchhccC-CCCCccEEEEccChhhCCC
Confidence            58999999999999999876  4678888865   23333444432  334455555554 5679999999999987766


Q ss_pred             hhcHHHHHHHHHhcccCCcEEEEe
Q 046488          403 FVLLDFILYDWDRVLRPGGLLWID  426 (480)
Q Consensus       403 ~~~l~~~L~EI~RVLKPGG~fiI~  426 (480)
                      .   ..++.++.|+|||||.+++.
T Consensus       109 ~---~~~l~~~~~~LkpgG~~~~~  129 (258)
T PRK01683        109 H---LELFPRLVSLLAPGGVLAVQ  129 (258)
T ss_pred             H---HHHHHHHHHhcCCCcEEEEE
Confidence            5   46999999999999999885

>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.20  E-value=1.6e-10  Score=117.43  Aligned_cols=128  Identities=16%  Similarity=0.150  Sum_probs=92.7

Q ss_pred             CCCeEEEECCCCcHHHHHHhhCCC-EEEEEecCCChhHHHHHHHh--CC-CCe-eeec-ccCCCCCCCccchheeccccc
Q 046488          325 EIRIGLDFSIGTGTFAARMREFNV-TLVSAIINLGAPFNEMIALR--GL-VPL-YITI-NQRVPFFDNTLDLIHTTRFLD  398 (480)
Q Consensus       325 ~iR~VLDVGCGtG~fAa~Lae~gV-~Vv~vd~d~~~~~~~~iA~r--gl-ip~-~~~~-ae~LPFpd~SFDlV~ss~vL~  398 (480)
                      ..++|||||||.|.++.+|+.+|. .|++++++...-.+-.+..+  |. ... .+.. .+.||. .++||+|+|+.+|.
T Consensus       115 ~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~-~~~FDtVF~MGVLY  193 (315)
T PF08003_consen  115 KGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLPN-LGAFDTVFSMGVLY  193 (315)
T ss_pred             CCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhccc-cCCcCEEEEeeehh
Confidence            346899999999999999999987 48999876433233222222  11 122 2222 788998 89999999999999


Q ss_pred             CccChhcHHHHHHHHHhcccCCcEEEEeeccCCh---------------------hhHHHHHHHHHHcCceeeEEEEee
Q 046488          399 GWIDFVLLDFILYDWDRVLRPGGLLWIDSFFCAK---------------------EDMNDYLEVFKMLKYKKHKWVVVP  456 (480)
Q Consensus       399 h~~d~~~l~~~L~EI~RVLKPGG~fiI~~f~~~~---------------------edL~~~~~~l~~lGfkkl~W~~~~  456 (480)
                      |..++-   ..|.++...|||||.+++....-..                     .....+...++++||+.++-.-..
T Consensus       194 Hrr~Pl---~~L~~Lk~~L~~gGeLvLETlvi~g~~~~~L~P~~rYa~m~nv~FiPs~~~L~~wl~r~gF~~v~~v~~~  269 (315)
T PF08003_consen  194 HRRSPL---DHLKQLKDSLRPGGELVLETLVIDGDENTVLVPEDRYAKMRNVWFIPSVAALKNWLERAGFKDVRCVDVS  269 (315)
T ss_pred             ccCCHH---HHHHHHHHhhCCCCEEEEEEeeecCCCceEEccCCcccCCCceEEeCCHHHHHHHHHHcCCceEEEecCc
Confidence            998884   5999999999999999976321111                     123567889999999988754433

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification

>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional

Probab=99.20  E-value=2e-10  Score=110.61  Aligned_cols=138  Identities=18%  Similarity=0.178  Sum_probs=88.6

Q ss_pred             CCCCCCCeEEEECCCCcHHHHHHhhC-C--CEEEEEecCCChhHHHHHHHhCCCCeeeecccCC--------CCCCCccc
Q 046488          321 IKPGEIRIGLDFSIGTGTFAARMREF-N--VTLVSAIINLGAPFNEMIALRGLVPLYITINQRV--------PFFDNTLD  389 (480)
Q Consensus       321 l~~g~iR~VLDVGCGtG~fAa~Lae~-g--V~Vv~vd~d~~~~~~~~iA~rglip~~~~~ae~L--------PFpd~SFD  389 (480)
                      ++++  .+|||+|||||.++..++++ +  ..+++++++.   +.    ....+.++.+++...        ++.+++||
T Consensus        49 ~~~~--~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~---~~----~~~~v~~i~~D~~~~~~~~~i~~~~~~~~~D  119 (209)
T PRK11188         49 FKPG--MTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP---MD----PIVGVDFLQGDFRDELVLKALLERVGDSKVQ  119 (209)
T ss_pred             CCCC--CEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc---cc----CCCCcEEEecCCCChHHHHHHHHHhCCCCCC
Confidence            3444  38999999999999999886 2  4688888753   11    011244555665554        36789999


Q ss_pred             hheecccccCccChh--------cHHHHHHHHHhcccCCcEEEEeeccCChhhHHHHHHHHHHcCceeeEEEEeeccCCC
Q 046488          390 LIHTTRFLDGWIDFV--------LLDFILYDWDRVLRPGGLLWIDSFFCAKEDMNDYLEVFKMLKYKKHKWVVVPKRDKD  461 (480)
Q Consensus       390 lV~ss~vL~h~~d~~--------~l~~~L~EI~RVLKPGG~fiI~~f~~~~edL~~~~~~l~~lGfkkl~W~~~~k~d~~  461 (480)
                      +|+|..+......+.        ..+.+|.++.|+|||||.|++..|..  ++..++...++. +|..+.+.........
T Consensus       120 ~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~--~~~~~~l~~l~~-~f~~v~~~Kp~ssr~~  196 (209)
T PRK11188        120 VVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQG--EGFDEYLREIRS-LFTKVKVRKPDSSRAR  196 (209)
T ss_pred             EEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecC--cCHHHHHHHHHh-CceEEEEECCcccccc
Confidence            999976654332210        12458999999999999999977654  333444444433 5777766433222225


Q ss_pred             CcceeEEEE
Q 046488          462 DREVFFSAV  470 (480)
Q Consensus       462 ~~E~~lsav  470 (480)
                      ..|.|+.+.
T Consensus       197 s~e~~~~~~  205 (209)
T PRK11188        197 SREVYIVAT  205 (209)
T ss_pred             CceeEEEee
Confidence            568887654

>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases

Probab=99.19  E-value=2.8e-10  Score=107.01  Aligned_cols=97  Identities=25%  Similarity=0.290  Sum_probs=73.1

Q ss_pred             CeEEEECCCCcHHHHHHhhCC---CEEEEEecCCChhHHHHHHHh----CCCCeeeecccCCCCCCCccchheecccccC
Q 046488          327 RIGLDFSIGTGTFAARMREFN---VTLVSAIINLGAPFNEMIALR----GLVPLYITINQRVPFFDNTLDLIHTTRFLDG  399 (480)
Q Consensus       327 R~VLDVGCGtG~fAa~Lae~g---V~Vv~vd~d~~~~~~~~iA~r----glip~~~~~ae~LPFpd~SFDlV~ss~vL~h  399 (480)
                      .+|||+|||+|.++..+++..   ..+++++++.  .+......+    ..+.+..++...+++++++||+|++..++++
T Consensus        41 ~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~--~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~i~~~~~~~~  118 (223)
T TIGR01934        41 QKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSS--EMLEVAKKKSELPLNIEFIQADAEALPFEDNSFDAVTIAFGLRN  118 (223)
T ss_pred             CeEEEeCCCCChhHHHHHHhcCCCceEEEEECCH--HHHHHHHHHhccCCCceEEecchhcCCCCCCcEEEEEEeeeeCC
Confidence            489999999999999998763   3677777652  222222221    1244555667778888899999999999888


Q ss_pred             ccChhcHHHHHHHHHhcccCCcEEEEeec
Q 046488          400 WIDFVLLDFILYDWDRVLRPGGLLWIDSF  428 (480)
Q Consensus       400 ~~d~~~l~~~L~EI~RVLKPGG~fiI~~f  428 (480)
                      ..+.   ..++.++.++|||||++++.++
T Consensus       119 ~~~~---~~~l~~~~~~L~~gG~l~~~~~  144 (223)
T TIGR01934       119 VTDI---QKALREMYRVLKPGGRLVILEF  144 (223)
T ss_pred             cccH---HHHHHHHHHHcCCCcEEEEEEe
Confidence            7765   4699999999999999998654

Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.

>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A

Probab=99.18  E-value=8.9e-11  Score=106.09  Aligned_cols=97  Identities=22%  Similarity=0.288  Sum_probs=72.7

Q ss_pred             CeEEEECCCCcHHHHHHhh-C--CCEEEEEecCCChhHHH---HHHHhCC---CCeeeecccCCC--CCCCccchheecc
Q 046488          327 RIGLDFSIGTGTFAARMRE-F--NVTLVSAIINLGAPFNE---MIALRGL---VPLYITINQRVP--FFDNTLDLIHTTR  395 (480)
Q Consensus       327 R~VLDVGCGtG~fAa~Lae-~--gV~Vv~vd~d~~~~~~~---~iA~rgl---ip~~~~~ae~LP--Fpd~SFDlV~ss~  395 (480)
                      .+|||+|||+|.++..|++ .  +..++++|.+.  .+..   +.+++..   +.+..++.+.++  ++ +.||+|++..
T Consensus         5 ~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~--~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~~~-~~~D~I~~~~   81 (152)
T PF13847_consen    5 KKILDLGCGTGRLLIQLAKELNPGAKIIGVDISE--EMIEYAKKRAKELGLDNIEFIQGDIEDLPQELE-EKFDIIISNG   81 (152)
T ss_dssp             SEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSH--HHHHHHHHHHHHTTSTTEEEEESBTTCGCGCSS-TTEEEEEEES
T ss_pred             CEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcH--HHHHHhhcccccccccccceEEeehhccccccC-CCeeEEEEcC
Confidence            4899999999999999994 3  67889988763  2222   2222232   344556666677  76 9999999999


Q ss_pred             cccCccChhcHHHHHHHHHhcccCCcEEEEeecc
Q 046488          396 FLDGWIDFVLLDFILYDWDRVLRPGGLLWIDSFF  429 (480)
Q Consensus       396 vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~f~  429 (480)
                      ++++..+.   ..++.++.|+|||||.+++..+.
T Consensus        82 ~l~~~~~~---~~~l~~~~~~lk~~G~~i~~~~~  112 (152)
T PF13847_consen   82 VLHHFPDP---EKVLKNIIRLLKPGGILIISDPN  112 (152)
T ss_dssp             TGGGTSHH---HHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             chhhccCH---HHHHHHHHHHcCCCcEEEEEECC
Confidence            99777666   46999999999999999987655

...

>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A

Probab=99.18  E-value=2.4e-11  Score=102.60  Aligned_cols=90  Identities=26%  Similarity=0.351  Sum_probs=65.5

Q ss_pred             EEEECCCCcHHHHHHhhC---C--CEEEEEecCCChhHHHHHHHhC-----CCCeeeecccCCCCCCCccchheeccc-c
Q 046488          329 GLDFSIGTGTFAARMREF---N--VTLVSAIINLGAPFNEMIALRG-----LVPLYITINQRVPFFDNTLDLIHTTRF-L  397 (480)
Q Consensus       329 VLDVGCGtG~fAa~Lae~---g--V~Vv~vd~d~~~~~~~~iA~rg-----lip~~~~~ae~LPFpd~SFDlV~ss~v-L  397 (480)
                      |||+|||+|..+..+++.   +  ..++++|++  ..+....+++.     .+.+++++++.+++.+++||+|+|+.. +
T Consensus         1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s--~~~l~~~~~~~~~~~~~~~~~~~D~~~l~~~~~~~D~v~~~~~~~   78 (101)
T PF13649_consen    1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDIS--PEMLELAKKRFSEDGPKVRFVQADARDLPFSDGKFDLVVCSGLSL   78 (101)
T ss_dssp             -EEET-TTSHHHHHHHHHS-----SEEEEEES---HHHHHHHHHHSHHTTTTSEEEESCTTCHHHHSSSEEEEEE-TTGG
T ss_pred             CEEeecCCcHHHHHHHHHhhhcccceEEEEECC--HHHHHHHHHhchhcCCceEEEECCHhHCcccCCCeeEEEEcCCcc
Confidence            799999999999999876   3  788888865  24433333222     234566778889999999999999655 7


Q ss_pred             cCccChhcHHHHHHHHHhcccCCc
Q 046488          398 DGWIDFVLLDFILYDWDRVLRPGG  421 (480)
Q Consensus       398 ~h~~d~~~l~~~L~EI~RVLKPGG  421 (480)
                      +|+.+ ..+..++.++.++|||||
T Consensus        79 ~~~~~-~~~~~ll~~~~~~l~pgG  101 (101)
T PF13649_consen   79 HHLSP-EELEALLRRIARLLRPGG  101 (101)
T ss_dssp             GGSSH-HHHHHHHHHHHHTEEEEE
T ss_pred             CCCCH-HHHHHHHHHHHHHhCCCC
Confidence            77544 445889999999999998

>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional

Probab=99.17  E-value=1e-10  Score=116.13  Aligned_cols=89  Identities=24%  Similarity=0.331  Sum_probs=65.3

Q ss_pred             CeEEEECCCCcHHHHHHhhC-----CCEEEEEecCCChhHHHHHHHh-CCCCeeeecccCCCCCCCccchheecccccCc
Q 046488          327 RIGLDFSIGTGTFAARMREF-----NVTLVSAIINLGAPFNEMIALR-GLVPLYITINQRVPFFDNTLDLIHTTRFLDGW  400 (480)
Q Consensus       327 R~VLDVGCGtG~fAa~Lae~-----gV~Vv~vd~d~~~~~~~~iA~r-glip~~~~~ae~LPFpd~SFDlV~ss~vL~h~  400 (480)
                      .+|||+|||+|.++..+++.     +..++++|++  ..+...++++ ..+.+.++++..+||++++||+|++..+    
T Consensus        87 ~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s--~~~l~~A~~~~~~~~~~~~d~~~lp~~~~sfD~I~~~~~----  160 (272)
T PRK11088         87 TALLDIGCGEGYYTHALADALPEITTMQLFGLDIS--KVAIKYAAKRYPQVTFCVASSHRLPFADQSLDAIIRIYA----  160 (272)
T ss_pred             CeEEEECCcCCHHHHHHHHhcccccCCeEEEECCC--HHHHHHHHHhCCCCeEEEeecccCCCcCCceeEEEEecC----
Confidence            57999999999999988764     2356777765  3443333332 2244556778899999999999997543    


Q ss_pred             cChhcHHHHHHHHHhcccCCcEEEEee
Q 046488          401 IDFVLLDFILYDWDRVLRPGGLLWIDS  427 (480)
Q Consensus       401 ~d~~~l~~~L~EI~RVLKPGG~fiI~~  427 (480)
                        +.    .+.|+.|+|||||+|++..
T Consensus       161 --~~----~~~e~~rvLkpgG~li~~~  181 (272)
T PRK11088        161 --PC----KAEELARVVKPGGIVITVT  181 (272)
T ss_pred             --CC----CHHHHHhhccCCCEEEEEe
Confidence              21    4789999999999998863

>KOG4300 consensus Predicted methyltransferase [General function prediction only]

Probab=99.17  E-value=5.7e-11  Score=114.98  Aligned_cols=111  Identities=22%  Similarity=0.109  Sum_probs=79.6

Q ss_pred             eEEEECCCCcHHHHHHhh-CCCEEEEEecCCChhHHHHH----HHhCC---CC-eeeecccCCC-CCCCccchheecccc
Q 046488          328 IGLDFSIGTGTFAARMRE-FNVTLVSAIINLGAPFNEMI----ALRGL---VP-LYITINQRVP-FFDNTLDLIHTTRFL  397 (480)
Q Consensus       328 ~VLDVGCGtG~fAa~Lae-~gV~Vv~vd~d~~~~~~~~i----A~rgl---ip-~~~~~ae~LP-Fpd~SFDlV~ss~vL  397 (480)
                      .||+||||||..-.++.- .+..++.++++.   ..+.+    +++..   +. ++++..+.+| .+|+|+|.|+++.+|
T Consensus        79 ~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~---~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l~d~s~DtVV~TlvL  155 (252)
T KOG4300|consen   79 DVLEVGCGTGANFKFYPWKPINSVTCLDPNE---KMEEIADKSAAEKKPLQVERFVVADGENLPQLADGSYDTVVCTLVL  155 (252)
T ss_pred             ceEEecccCCCCcccccCCCCceEEEeCCcH---HHHHHHHHHHhhccCcceEEEEeechhcCcccccCCeeeEEEEEEE
Confidence            489999999987666653 477888888763   22322    22222   22 4567799999 899999999999999


Q ss_pred             cCccChhcHHHHHHHHHhcccCCcEEEEeeccCChhh-HH-HHHHHHHH
Q 046488          398 DGWIDFVLLDFILYDWDRVLRPGGLLWIDSFFCAKED-MN-DYLEVFKM  444 (480)
Q Consensus       398 ~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~f~~~~ed-L~-~~~~~l~~  444 (480)
                      ....++   .+.|.|+.|+|||||++++...-..... +. .+++.+++
T Consensus       156 CSve~~---~k~L~e~~rlLRpgG~iifiEHva~~y~~~n~i~q~v~ep  201 (252)
T KOG4300|consen  156 CSVEDP---VKQLNEVRRLLRPGGRIIFIEHVAGEYGFWNRILQQVAEP  201 (252)
T ss_pred             eccCCH---HHHHHHHHHhcCCCcEEEEEecccccchHHHHHHHHHhch
Confidence            988887   4699999999999999988643322222 22 35555555

>TIGR00740 methyltransferase, putative

Probab=99.17  E-value=9.5e-11  Score=113.71  Aligned_cols=98  Identities=17%  Similarity=0.072  Sum_probs=71.7

Q ss_pred             CeEEEECCCCcHHHHHHhhC----CCEEEEEecCCChhHHHHH----HHhC---CCCeeeecccCCCCCCCccchheecc
Q 046488          327 RIGLDFSIGTGTFAARMREF----NVTLVSAIINLGAPFNEMI----ALRG---LVPLYITINQRVPFFDNTLDLIHTTR  395 (480)
Q Consensus       327 R~VLDVGCGtG~fAa~Lae~----gV~Vv~vd~d~~~~~~~~i----A~rg---lip~~~~~ae~LPFpd~SFDlV~ss~  395 (480)
                      .+|||+|||+|.++..++++    +..+++++++.  .+....    ...+   .+.+..++...++++  .+|+|++.+
T Consensus        55 ~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~--~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~--~~d~v~~~~  130 (239)
T TIGR00740        55 SNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQ--PMVERCRQHIAAYHSEIPVEILCNDIRHVEIK--NASMVILNF  130 (239)
T ss_pred             CEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCH--HHHHHHHHHHHhcCCCCCeEEEECChhhCCCC--CCCEEeeec
Confidence            47999999999999988863    56788888753  333222    1111   134455667777775  489999999


Q ss_pred             cccCccChhcHHHHHHHHHhcccCCcEEEEeecc
Q 046488          396 FLDGWIDFVLLDFILYDWDRVLRPGGLLWIDSFF  429 (480)
Q Consensus       396 vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~f~  429 (480)
                      +++|+.+.+ ...++.+++|+|||||.|++.+..
T Consensus       131 ~l~~~~~~~-~~~~l~~i~~~LkpgG~l~i~d~~  163 (239)
T TIGR00740       131 TLQFLPPED-RIALLTKIYEGLNPNGVLVLSEKF  163 (239)
T ss_pred             chhhCCHHH-HHHHHHHHHHhcCCCeEEEEeecc
Confidence            998876433 367999999999999999998643

A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=99.16  E-value=1.6e-10  Score=122.95  Aligned_cols=122  Identities=16%  Similarity=0.179  Sum_probs=87.6

Q ss_pred             CeEEEECCCCcHHHHHHhhCCCEEEEEecCCChhHHHHHHH-hC---CCCeeeecc--cCCCCCCCccchheecccccCc
Q 046488          327 RIGLDFSIGTGTFAARMREFNVTLVSAIINLGAPFNEMIAL-RG---LVPLYITIN--QRVPFFDNTLDLIHTTRFLDGW  400 (480)
Q Consensus       327 R~VLDVGCGtG~fAa~Lae~gV~Vv~vd~d~~~~~~~~iA~-rg---lip~~~~~a--e~LPFpd~SFDlV~ss~vL~h~  400 (480)
                      .+|||+|||+|.++..|++++..+++++++.  .+...... .+   .+.++.+++  ..+|+++++||+|++..+++|+
T Consensus        39 ~~vLDlGcG~G~~~~~la~~~~~v~giD~s~--~~l~~a~~~~~~~~~i~~~~~d~~~~~~~~~~~~fD~I~~~~~l~~l  116 (475)
T PLN02336         39 KSVLELGAGIGRFTGELAKKAGQVIALDFIE--SVIKKNESINGHYKNVKFMCADVTSPDLNISDGSVDLIFSNWLLMYL  116 (475)
T ss_pred             CEEEEeCCCcCHHHHHHHhhCCEEEEEeCCH--HHHHHHHHHhccCCceEEEEecccccccCCCCCCEEEEehhhhHHhC
Confidence            4899999999999999999877888887653  34333221 12   133444444  3688999999999999999888


Q ss_pred             cChhcHHHHHHHHHhcccCCcEEEEeeccCCh----------h---hHHHHHHHHHHcCceeeE
Q 046488          401 IDFVLLDFILYDWDRVLRPGGLLWIDSFFCAK----------E---DMNDYLEVFKMLKYKKHK  451 (480)
Q Consensus       401 ~d~~~l~~~L~EI~RVLKPGG~fiI~~f~~~~----------e---dL~~~~~~l~~lGfkkl~  451 (480)
                      .+.. +..++.+++|+|||||++++.+.....          .   ....|.+++...|+....
T Consensus       117 ~~~~-~~~~l~~~~r~Lk~gG~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~  179 (475)
T PLN02336        117 SDKE-VENLAERMVKWLKVGGYIFFRESCFHQSGDSKRKNNPTHYREPRFYTKVFKECHTRDED  179 (475)
T ss_pred             CHHH-HHHHHHHHHHhcCCCeEEEEEeccCCCCCcccccCCCCeecChHHHHHHHHHheeccCC
Confidence            7643 367999999999999999886421110          0   134677888888876553

>smart00138 MeTrc Methyltransferase, chemotaxis proteins

Probab=99.16  E-value=1.3e-10  Score=115.84  Aligned_cols=98  Identities=20%  Similarity=0.164  Sum_probs=71.0

Q ss_pred             CCeEEEECCCCcH----HHHHHhhC-------CCEEEEEecCCChhHHHHHHHhCC------------------------
Q 046488          326 IRIGLDFSIGTGT----FAARMREF-------NVTLVSAIINLGAPFNEMIALRGL------------------------  370 (480)
Q Consensus       326 iR~VLDVGCGtG~----fAa~Lae~-------gV~Vv~vd~d~~~~~~~~iA~rgl------------------------  370 (480)
                      ..+|+|+|||||.    +|..+++.       ++.++++|++.  .+ ...|+++.                        
T Consensus       100 ~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~--~~-L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~  176 (264)
T smart00138      100 RVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDL--KA-LEKARAGIYPERELEDLPKALLARYFSRVEDK  176 (264)
T ss_pred             CEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCH--HH-HHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCe
Confidence            3579999999995    56666653       46788888762  33 33344432                        


Q ss_pred             ----------CCeeeecccCCCCCCCccchheecccccCccChhcHHHHHHHHHhcccCCcEEEEee
Q 046488          371 ----------VPLYITINQRVPFFDNTLDLIHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDS  427 (480)
Q Consensus       371 ----------ip~~~~~ae~LPFpd~SFDlV~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~  427 (480)
                                +.+...+....|+++++||+|+|..+++++.++. ...++.+++|+|||||++++.+
T Consensus       177 ~~v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~-~~~~l~~l~~~L~pGG~L~lg~  242 (264)
T smart00138      177 YRVKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPT-QRKLLNRFAEALKPGGYLFLGH  242 (264)
T ss_pred             EEEChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHH-HHHHHHHHHHHhCCCeEEEEEC
Confidence                      2223344566777889999999999999886543 3679999999999999999853

Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.

>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases

Probab=99.16  E-value=3.2e-10  Score=110.03  Aligned_cols=143  Identities=20%  Similarity=0.207  Sum_probs=87.1

Q ss_pred             chhhhhHHHhcCCCCCCCCeEEEECCCCcHHHHHHhhCCCEEEEEecCCChhHHHHHHHhCCCCeeeecccCCCCCCCcc
Q 046488          309 LTADFLIPEVLDIKPGEIRIGLDFSIGTGTFAARMREFNVTLVSAIINLGAPFNEMIALRGLVPLYITINQRVPFFDNTL  388 (480)
Q Consensus       309 ~~ad~~I~~vL~l~~g~iR~VLDVGCGtG~fAa~Lae~gV~Vv~vd~d~~~~~~~~iA~rglip~~~~~ae~LPFpd~SF  388 (480)
                      +-.|.+|..+.....+  ..|-|+|||.+.+|..+. .+++|.++|+....+           .+...+...+|.++++.
T Consensus        58 nPvd~iI~~l~~~~~~--~viaD~GCGdA~la~~~~-~~~~V~SfDLva~n~-----------~Vtacdia~vPL~~~sv  123 (219)
T PF05148_consen   58 NPVDVIIEWLKKRPKS--LVIADFGCGDAKLAKAVP-NKHKVHSFDLVAPNP-----------RVTACDIANVPLEDESV  123 (219)
T ss_dssp             -HHHHHHHHHCTS-TT--S-EEEES-TT-HHHHH---S---EEEEESS-SST-----------TEEES-TTS-S--TT-E
T ss_pred             CcHHHHHHHHHhcCCC--EEEEECCCchHHHHHhcc-cCceEEEeeccCCCC-----------CEEEecCccCcCCCCce
Confidence            3466677665544322  489999999999998765 457888888642111           24456678999999999


Q ss_pred             chheecccccCccChhcHHHHHHHHHhcccCCcEEEEeeccCChhhHHHHHHHHHHcCceeeEEEEeeccCCCCcceeEE
Q 046488          389 DLIHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDSFFCAKEDMNDYLEVFKMLKYKKHKWVVVPKRDKDDREVFFS  468 (480)
Q Consensus       389 DlV~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~f~~~~edL~~~~~~l~~lGfkkl~W~~~~k~d~~~~E~~ls  468 (480)
                      |++++...|+.  .+  +..++.|.+|||||||.++|......-++.+.+.+.++.+||+...-..       ....|..
T Consensus       124 Dv~VfcLSLMG--Tn--~~~fi~EA~RvLK~~G~L~IAEV~SRf~~~~~F~~~~~~~GF~~~~~d~-------~n~~F~~  192 (219)
T PF05148_consen  124 DVAVFCLSLMG--TN--WPDFIREANRVLKPGGILKIAEVKSRFENVKQFIKALKKLGFKLKSKDE-------SNKHFVL  192 (219)
T ss_dssp             EEEEEES---S--S---HHHHHHHHHHHEEEEEEEEEEEEGGG-S-HHHHHHHHHCTTEEEEEEE---------STTEEE
T ss_pred             eEEEEEhhhhC--CC--cHHHHHHHHheeccCcEEEEEEecccCcCHHHHHHHHHHCCCeEEeccc-------CCCeEEE
Confidence            99997666643  22  2569999999999999999987655555778889999999998553211       1345666


Q ss_pred             EEEEeCCC
Q 046488          469 AVLEKPPR  476 (480)
Q Consensus       469 av~qKP~~  476 (480)
                      ..++|..+
T Consensus       193 f~F~K~~~  200 (219)
T PF05148_consen  193 FEFKKIRK  200 (219)
T ss_dssp             EEEEE-SS
T ss_pred             EEEEEcCc
Confidence            67777654

; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.

>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins

Probab=99.15  E-value=3.4e-10  Score=108.96  Aligned_cols=150  Identities=19%  Similarity=0.101  Sum_probs=90.7

Q ss_pred             CCCCCCCeEEEECCCCcHHHHHHhhCCCEEEEEecCCChhHHHHHHHhCC-----CCeeeecccCCCCCCCccchheecc
Q 046488          321 IKPGEIRIGLDFSIGTGTFAARMREFNVTLVSAIINLGAPFNEMIALRGL-----VPLYITINQRVPFFDNTLDLIHTTR  395 (480)
Q Consensus       321 l~~g~iR~VLDVGCGtG~fAa~Lae~gV~Vv~vd~d~~~~~~~~iA~rgl-----ip~~~~~ae~LPFpd~SFDlV~ss~  395 (480)
                      +..+..+++||+|||.|.|+..|+.+--.++++|.+   +.....|+++.     +.+.+..... ..|++.||+|+++-
T Consensus        39 Lp~~ry~~alEvGCs~G~lT~~LA~rCd~LlavDis---~~Al~~Ar~Rl~~~~~V~~~~~dvp~-~~P~~~FDLIV~SE  114 (201)
T PF05401_consen   39 LPRRRYRRALEVGCSIGVLTERLAPRCDRLLAVDIS---PRALARARERLAGLPHVEWIQADVPE-FWPEGRFDLIVLSE  114 (201)
T ss_dssp             HTTSSEEEEEEE--TTSHHHHHHGGGEEEEEEEES----HHHHHHHHHHTTT-SSEEEEES-TTT----SS-EEEEEEES
T ss_pred             cCccccceeEecCCCccHHHHHHHHhhCceEEEeCC---HHHHHHHHHhcCCCCCeEEEECcCCC-CCCCCCeeEEEEeh
Confidence            556667899999999999999999984455555543   33333444432     2223333322 25789999999999


Q ss_pred             cccCccChhcHHHHHHHHHhcccCCcEEEEeeccCCh-------hhHHHHHHHHHHcCceeeE-EEEeeccCCCCcceeE
Q 046488          396 FLDGWIDFVLLDFILYDWDRVLRPGGLLWIDSFFCAK-------EDMNDYLEVFKMLKYKKHK-WVVVPKRDKDDREVFF  467 (480)
Q Consensus       396 vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~f~~~~-------edL~~~~~~l~~lGfkkl~-W~~~~k~d~~~~E~~l  467 (480)
                      +++.+.+.+.+..++..+...|+|||.+++.+|....       ..-+.+.+++... +..+. ......   ..+|--+
T Consensus       115 VlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~rd~~c~~wgh~~ga~tv~~~~~~~-~~~~~~~~~~~~---~~~~~~~  190 (201)
T PF05401_consen  115 VLYYLDDAEDLRAALDRLVAALAPGGHLVFGHARDANCRRWGHAAGAETVLEMLQEH-LTEVERVECRGG---SPNEDCL  190 (201)
T ss_dssp             -GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE-HHHHHHTT-S--HHHHHHHHHHH-SEEEEEEEEE-S---STTSEEE
T ss_pred             HhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEecCCcccccCcccchHHHHHHHHHH-hhheeEEEEcCC---CCCCceE
Confidence            9998887666788999999999999999998764211       1123455566553 44443 222222   2245566


Q ss_pred             EEEEEeCCCCC
Q 046488          468 SAVLEKPPRPF  478 (480)
Q Consensus       468 sav~qKP~~~~  478 (480)
                      .+-++||.+.|
T Consensus       191 ~~~~~~~~~~~  201 (201)
T PF05401_consen  191 LARFRNPVSAS  201 (201)
T ss_dssp             EEEEE--SSS-
T ss_pred             eeeecCCcCCC
Confidence            78999999864

The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.

>TIGR02081 metW methionine biosynthesis protein MetW

Probab=99.14  E-value=6e-10  Score=105.01  Aligned_cols=121  Identities=17%  Similarity=0.116  Sum_probs=82.2

Q ss_pred             eEEEECCCCcHHHHHHhhC-CCEEEEEecCCChhHHHHHHHhCCCCeeeecccC-C-CCCCCccchheecccccCccChh
Q 046488          328 IGLDFSIGTGTFAARMREF-NVTLVSAIINLGAPFNEMIALRGLVPLYITINQR-V-PFFDNTLDLIHTTRFLDGWIDFV  404 (480)
Q Consensus       328 ~VLDVGCGtG~fAa~Lae~-gV~Vv~vd~d~~~~~~~~iA~rglip~~~~~ae~-L-PFpd~SFDlV~ss~vL~h~~d~~  404 (480)
                      +|||+|||+|.++..+++. +..+++++++  ..+.. .+.+..+.++.++++. + ++++++||+|+++.+++|+.++ 
T Consensus        16 ~iLDiGcG~G~~~~~l~~~~~~~~~giD~s--~~~i~-~a~~~~~~~~~~d~~~~l~~~~~~sfD~Vi~~~~l~~~~d~-   91 (194)
T TIGR02081        16 RVLDLGCGDGELLALLRDEKQVRGYGIEID--QDGVL-ACVARGVNVIQGDLDEGLEAFPDKSFDYVILSQTLQATRNP-   91 (194)
T ss_pred             EEEEeCCCCCHHHHHHHhccCCcEEEEeCC--HHHHH-HHHHcCCeEEEEEhhhcccccCCCCcCEEEEhhHhHcCcCH-
Confidence            7999999999999999764 5666777654  23333 3334446666666543 5 4889999999999999988776 


Q ss_pred             cHHHHHHHHHhcccCCcEEEEee-------------------------ccCC----hhhHHHHHHHHHHcCceeeEEEEe
Q 046488          405 LLDFILYDWDRVLRPGGLLWIDS-------------------------FFCA----KEDMNDYLEVFKMLKYKKHKWVVV  455 (480)
Q Consensus       405 ~l~~~L~EI~RVLKPGG~fiI~~-------------------------f~~~----~edL~~~~~~l~~lGfkkl~W~~~  455 (480)
                        ..++.|+.|+++++.. .+-.                         |+..    -...+.+.++++..||+.+.....
T Consensus        92 --~~~l~e~~r~~~~~ii-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ll~~~Gf~v~~~~~~  168 (194)
T TIGR02081        92 --EEILDEMLRVGRHAIV-SFPNFGYWRVRWSILTKGRMPVTGELPYDWYNTPNIHFCTIADFEDLCGELNLRILDRAAF  168 (194)
T ss_pred             --HHHHHHHHHhCCeEEE-EcCChhHHHHHHHHHhCCccccCCCCCccccCCCCcccCcHHHHHHHHHHCCCEEEEEEEe
Confidence              4689999999876422 1100                         0000    011356789999999997765443

This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.

>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]

Probab=99.14  E-value=1.6e-10  Score=116.59  Aligned_cols=110  Identities=27%  Similarity=0.267  Sum_probs=82.9

Q ss_pred             HHHhcCCCCCCCCeEEEECCCCcHHHHHHhhC-CCEEEEEecCCChh--HHHHHHHhCCCCeeeecccCCCCCCCccchh
Q 046488          315 IPEVLDIKPGEIRIGLDFSIGTGTFAARMREF-NVTLVSAIINLGAP--FNEMIALRGLVPLYITINQRVPFFDNTLDLI  391 (480)
Q Consensus       315 I~~vL~l~~g~iR~VLDVGCGtG~fAa~Lae~-gV~Vv~vd~d~~~~--~~~~iA~rglip~~~~~ae~LPFpd~SFDlV  391 (480)
                      +.+.|.+++|.  +|||||||.|.++.+++++ |++|++++++.++-  .+..++++|.-.-+.-..+..+..++.||-|
T Consensus        64 ~~~kl~L~~G~--~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~e~fDrI  141 (283)
T COG2230          64 ILEKLGLKPGM--TLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFEEPFDRI  141 (283)
T ss_pred             HHHhcCCCCCC--EEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEecccccccccccee
Confidence            34567888886  8999999999999999987 89999999874321  2234555555322222245555556669999


Q ss_pred             eecccccCccChhcHHHHHHHHHhcccCCcEEEEee
Q 046488          392 HTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDS  427 (480)
Q Consensus       392 ~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~  427 (480)
                      +|..+++|+.... ...+|.-++++|+|||.+++..
T Consensus       142 vSvgmfEhvg~~~-~~~ff~~~~~~L~~~G~~llh~  176 (283)
T COG2230         142 VSVGMFEHVGKEN-YDDFFKKVYALLKPGGRMLLHS  176 (283)
T ss_pred             eehhhHHHhCccc-HHHHHHHHHhhcCCCceEEEEE
Confidence            9999999987533 3679999999999999998764

>PRK04266 fibrillarin; Provisional

Probab=99.13  E-value=4.6e-10  Score=109.86  Aligned_cols=127  Identities=11%  Similarity=0.095  Sum_probs=82.0

Q ss_pred             cCCCCCCCCeEEEECCCCcHHHHHHhhC--CCEEEEEecCCChhHHH----HHHHhCCCCeeeecccC----CCCCCCcc
Q 046488          319 LDIKPGEIRIGLDFSIGTGTFAARMREF--NVTLVSAIINLGAPFNE----MIALRGLVPLYITINQR----VPFFDNTL  388 (480)
Q Consensus       319 L~l~~g~iR~VLDVGCGtG~fAa~Lae~--gV~Vv~vd~d~~~~~~~----~iA~rglip~~~~~ae~----LPFpd~SF  388 (480)
                      ++++++.  +|||+|||+|.++..+++.  +-.+++++.+.  .+.+    .+..+..+..+.+++..    .++ +++|
T Consensus        68 l~i~~g~--~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~--~ml~~l~~~a~~~~nv~~i~~D~~~~~~~~~l-~~~~  142 (226)
T PRK04266         68 FPIKKGS--KVLYLGAASGTTVSHVSDIVEEGVVYAVEFAP--RPMRELLEVAEERKNIIPILADARKPERYAHV-VEKV  142 (226)
T ss_pred             CCCCCCC--EEEEEccCCCHHHHHHHHhcCCCeEEEEECCH--HHHHHHHHHhhhcCCcEEEECCCCCcchhhhc-cccC
Confidence            6777775  8999999999999999886  23677776542  3322    22222234444444432    223 3569


Q ss_pred             chheecccccCccChhcHHHHHHHHHhcccCCcEEEE------eeccCChhh-HHHHHHHHHHcCceeeEEEEe
Q 046488          389 DLIHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWI------DSFFCAKED-MNDYLEVFKMLKYKKHKWVVV  455 (480)
Q Consensus       389 DlV~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI------~~f~~~~ed-L~~~~~~l~~lGfkkl~W~~~  455 (480)
                      |+|++...     ++.....++.++.|+|||||+++|      .+|...... .+...+.++..||+.+.+...
T Consensus       143 D~i~~d~~-----~p~~~~~~L~~~~r~LKpGG~lvI~v~~~~~d~~~~~~~~~~~~~~~l~~aGF~~i~~~~l  211 (226)
T PRK04266        143 DVIYQDVA-----QPNQAEIAIDNAEFFLKDGGYLLLAIKARSIDVTKDPKEIFKEEIRKLEEGGFEILEVVDL  211 (226)
T ss_pred             CEEEECCC-----ChhHHHHHHHHHHHhcCCCcEEEEEEecccccCcCCHHHHHHHHHHHHHHcCCeEEEEEcC
Confidence            99985322     222223578999999999999999      444433322 234558888999999887664

>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.12  E-value=3.6e-11  Score=100.61  Aligned_cols=91  Identities=23%  Similarity=0.331  Sum_probs=50.5

Q ss_pred             EEECCCCcHHHHHHhhC--CCEEEEEecCCChh--HHHHHHHhCCCCee-ee--cccCCCC-CCCccchheecccccCcc
Q 046488          330 LDFSIGTGTFAARMREF--NVTLVSAIINLGAP--FNEMIALRGLVPLY-IT--INQRVPF-FDNTLDLIHTTRFLDGWI  401 (480)
Q Consensus       330 LDVGCGtG~fAa~Lae~--gV~Vv~vd~d~~~~--~~~~iA~rglip~~-~~--~ae~LPF-pd~SFDlV~ss~vL~h~~  401 (480)
                      ||||||+|.++..+.++  +..++++|++...-  +.+++...+..... ..  ..+.... ..++||+|++..+++|+.
T Consensus         1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l~   80 (99)
T PF08242_consen    1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHHLE   80 (99)
T ss_dssp             -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS--S
T ss_pred             CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhhhh
Confidence            79999999999999887  67778887764221  22233333322111 11  1222222 226999999999999994


Q ss_pred             ChhcHHHHHHHHHhcccCCcEE
Q 046488          402 DFVLLDFILYDWDRVLRPGGLL  423 (480)
Q Consensus       402 d~~~l~~~L~EI~RVLKPGG~f  423 (480)
                      +.   ..++..++++|||||+|
T Consensus        81 ~~---~~~l~~~~~~L~pgG~l   99 (99)
T PF08242_consen   81 DI---EAVLRNIYRLLKPGGIL   99 (99)
T ss_dssp             -H---HHHHHHHTTT-TSS-EE
T ss_pred             hH---HHHHHHHHHHcCCCCCC
Confidence            44   57999999999999985

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.

>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU

Probab=99.10  E-value=6.5e-10  Score=111.95  Aligned_cols=104  Identities=15%  Similarity=0.101  Sum_probs=71.7

Q ss_pred             HhcCCCCCCCCeEEEECCCCcHHHHHHhhC--CCEEEEEecCCChhHHH----HHHHhCC---CCeeeecccCCCCCCCc
Q 046488          317 EVLDIKPGEIRIGLDFSIGTGTFAARMREF--NVTLVSAIINLGAPFNE----MIALRGL---VPLYITINQRVPFFDNT  387 (480)
Q Consensus       317 ~vL~l~~g~iR~VLDVGCGtG~fAa~Lae~--gV~Vv~vd~d~~~~~~~----~iA~rgl---ip~~~~~ae~LPFpd~S  387 (480)
                      +.+++.++  ++|||||||+|.++..++++  +..++.++.   +.+.+    .++..+.   +.++.++....++++  
T Consensus       143 ~~~~~~~~--~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~---~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~~--  215 (306)
T TIGR02716       143 EEAKLDGV--KKMIDVGGGIGDISAAMLKHFPELDSTILNL---PGAIDLVNENAAEKGVADRMRGIAVDIYKESYPE--  215 (306)
T ss_pred             HHcCCCCC--CEEEEeCCchhHHHHHHHHHCCCCEEEEEec---HHHHHHHHHHHHhCCccceEEEEecCccCCCCCC--
Confidence            34444443  58999999999999999887  456666653   12222    2223332   334445554455554  


Q ss_pred             cchheecccccCccChhcHHHHHHHHHhcccCCcEEEEeec
Q 046488          388 LDLIHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDSF  428 (480)
Q Consensus       388 FDlV~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~f  428 (480)
                      +|+|++++++++|.+.. ...++.+++|+|||||+++|.++
T Consensus       216 ~D~v~~~~~lh~~~~~~-~~~il~~~~~~L~pgG~l~i~d~  255 (306)
T TIGR02716       216 ADAVLFCRILYSANEQL-STIMCKKAFDAMRSGGRLLILDM  255 (306)
T ss_pred             CCEEEeEhhhhcCChHH-HHHHHHHHHHhcCCCCEEEEEEe
Confidence            69999999999887643 25699999999999999998754

Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.

>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional

Probab=99.09  E-value=3.6e-10  Score=118.36  Aligned_cols=102  Identities=22%  Similarity=0.275  Sum_probs=72.7

Q ss_pred             HhcCCCCCCCCeEEEECCCCcHHHHHHhhC-CCEEEEEecCCChhHHHHHHHhCC----CCeeeecccCCCCCCCccchh
Q 046488          317 EVLDIKPGEIRIGLDFSIGTGTFAARMREF-NVTLVSAIINLGAPFNEMIALRGL----VPLYITINQRVPFFDNTLDLI  391 (480)
Q Consensus       317 ~vL~l~~g~iR~VLDVGCGtG~fAa~Lae~-gV~Vv~vd~d~~~~~~~~iA~rgl----ip~~~~~ae~LPFpd~SFDlV  391 (480)
                      +.+.++++.  +|||||||+|.++..++++ |+.+++++++   +.+...+.++.    +.+...+...+   +++||+|
T Consensus       161 ~~l~l~~g~--rVLDIGcG~G~~a~~la~~~g~~V~giDlS---~~~l~~A~~~~~~l~v~~~~~D~~~l---~~~fD~I  232 (383)
T PRK11705        161 RKLQLKPGM--RVLDIGCGWGGLARYAAEHYGVSVVGVTIS---AEQQKLAQERCAGLPVEIRLQDYRDL---NGQFDRI  232 (383)
T ss_pred             HHhCCCCCC--EEEEeCCCccHHHHHHHHHCCCEEEEEeCC---HHHHHHHHHHhccCeEEEEECchhhc---CCCCCEE
Confidence            345566664  8999999999999999875 8888888865   23333333321    12222333333   5799999


Q ss_pred             eecccccCccChhcHHHHHHHHHhcccCCcEEEEee
Q 046488          392 HTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDS  427 (480)
Q Consensus       392 ~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~  427 (480)
                      ++..+++|+.... +..++.++.|+|||||++++..
T Consensus       233 vs~~~~ehvg~~~-~~~~l~~i~r~LkpGG~lvl~~  267 (383)
T PRK11705        233 VSVGMFEHVGPKN-YRTYFEVVRRCLKPDGLFLLHT  267 (383)
T ss_pred             EEeCchhhCChHH-HHHHHHHHHHHcCCCcEEEEEE
Confidence            9999988875432 3579999999999999999864

>PRK06922 hypothetical protein; Provisional

Probab=99.09  E-value=3e-10  Score=125.35  Aligned_cols=106  Identities=18%  Similarity=0.191  Sum_probs=75.9

Q ss_pred             hcCCCCCCCCeEEEECCCCcHHHHHHhhC--CCEEEEEecCCChhHHHHHHHh---CC--CCeeeecccCCC--CCCCcc
Q 046488          318 VLDIKPGEIRIGLDFSIGTGTFAARMREF--NVTLVSAIINLGAPFNEMIALR---GL--VPLYITINQRVP--FFDNTL  388 (480)
Q Consensus       318 vL~l~~g~iR~VLDVGCGtG~fAa~Lae~--gV~Vv~vd~d~~~~~~~~iA~r---gl--ip~~~~~ae~LP--Fpd~SF  388 (480)
                      +++..++  .+|||+|||+|.++..+++.  +..++++|++.  .+......+   ..  +.+..+++..+|  |++++|
T Consensus       413 i~d~~~g--~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~--~MLe~Ararl~~~g~~ie~I~gDa~dLp~~fedeSF  488 (677)
T PRK06922        413 ILDYIKG--DTIVDVGAGGGVMLDMIEEETEDKRIYGIDISE--NVIDTLKKKKQNEGRSWNVIKGDAINLSSSFEKESV  488 (677)
T ss_pred             HhhhcCC--CEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCH--HHHHHHHHHhhhcCCCeEEEEcchHhCccccCCCCE
Confidence            4444444  38999999999999888864  56888888653  333322211   11  223456666788  889999


Q ss_pred             chheecccccCccC----------hhcHHHHHHHHHhcccCCcEEEEee
Q 046488          389 DLIHTTRFLDGWID----------FVLLDFILYDWDRVLRPGGLLWIDS  427 (480)
Q Consensus       389 DlV~ss~vL~h~~d----------~~~l~~~L~EI~RVLKPGG~fiI~~  427 (480)
                      |+|+++.++++|.+          ...+..+++++.|+|||||++++.+
T Consensus       489 DvVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D  537 (677)
T PRK06922        489 DTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRD  537 (677)
T ss_pred             EEEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEe
Confidence            99999998887631          2334679999999999999999975

>PRK06202 hypothetical protein; Provisional

Probab=99.09  E-value=6.2e-10  Score=107.57  Aligned_cols=95  Identities=16%  Similarity=0.121  Sum_probs=69.1

Q ss_pred             CCeEEEECCCCcHHHHHHhh----CC--CEEEEEecCCChhHHHHHHHhC----CCCeeeecccCCCCCCCccchheecc
Q 046488          326 IRIGLDFSIGTGTFAARMRE----FN--VTLVSAIINLGAPFNEMIALRG----LVPLYITINQRVPFFDNTLDLIHTTR  395 (480)
Q Consensus       326 iR~VLDVGCGtG~fAa~Lae----~g--V~Vv~vd~d~~~~~~~~iA~rg----lip~~~~~ae~LPFpd~SFDlV~ss~  395 (480)
                      ..+|||+|||+|.++..|++    .|  +.++++|++.  .+.. .|.+.    .+......++.+++++++||+|+|+.
T Consensus        61 ~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~--~~l~-~a~~~~~~~~~~~~~~~~~~l~~~~~~fD~V~~~~  137 (232)
T PRK06202         61 PLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDP--RAVA-FARANPRRPGVTFRQAVSDELVAEGERFDVVTSNH  137 (232)
T ss_pred             CcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCH--HHHH-HHHhccccCCCeEEEEecccccccCCCccEEEECC
Confidence            35899999999999888864    23  4788887652  3333 33332    23444555677888899999999999


Q ss_pred             cccCccChhcHHHHHHHHHhcccCCcEEEEe
Q 046488          396 FLDGWIDFVLLDFILYDWDRVLRPGGLLWID  426 (480)
Q Consensus       396 vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~  426 (480)
                      +++|+.+++ +..++.|+.|++|  |.+++.
T Consensus       138 ~lhh~~d~~-~~~~l~~~~r~~~--~~~~i~  165 (232)
T PRK06202        138 FLHHLDDAE-VVRLLADSAALAR--RLVLHN  165 (232)
T ss_pred             eeecCChHH-HHHHHHHHHHhcC--eeEEEe
Confidence            999987653 3579999999999  444554

>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed

Probab=99.07  E-value=6.4e-10  Score=106.22  Aligned_cols=118  Identities=22%  Similarity=0.239  Sum_probs=77.6

Q ss_pred             CCeEEEECCCCcHHHHHHhhC--CCEEEEEecCCChhHHH----HHHHhCC--CCeeeecc-cCCC--CCCCccchheec
Q 046488          326 IRIGLDFSIGTGTFAARMREF--NVTLVSAIINLGAPFNE----MIALRGL--VPLYITIN-QRVP--FFDNTLDLIHTT  394 (480)
Q Consensus       326 iR~VLDVGCGtG~fAa~Lae~--gV~Vv~vd~d~~~~~~~----~iA~rgl--ip~~~~~a-e~LP--Fpd~SFDlV~ss  394 (480)
                      ..+|||+|||+|.++..+++.  +..+++++++.  .+..    .+...+.  +.+..+++ +.++  +++++||+|++.
T Consensus        41 ~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~--~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~  118 (202)
T PRK00121         41 APIHLEIGFGKGEFLVEMAKANPDINFIGIEVHE--PGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLN  118 (202)
T ss_pred             CCeEEEEccCCCHHHHHHHHHCCCccEEEEEech--HHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEEE
Confidence            358999999999999999875  45678887663  2222    2222222  33455666 7777  889999999986


Q ss_pred             ccccCccC------hhcHHHHHHHHHhcccCCcEEEEeeccCChhhHHHHHHHHHHcCce
Q 046488          395 RFLDGWID------FVLLDFILYDWDRVLRPGGLLWIDSFFCAKEDMNDYLEVFKMLKYK  448 (480)
Q Consensus       395 ~vL~h~~d------~~~l~~~L~EI~RVLKPGG~fiI~~f~~~~edL~~~~~~l~~lGfk  448 (480)
                      +.. +|..      ......++.++.|+|||||+|++..  ....-...+.+.++..|+.
T Consensus       119 ~~~-p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~--~~~~~~~~~~~~~~~~g~~  175 (202)
T PRK00121        119 FPD-PWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFAT--DWEGYAEYMLEVLSAEGGF  175 (202)
T ss_pred             CCC-CCCCccccccccCCHHHHHHHHHHcCCCCEEEEEc--CCHHHHHHHHHHHHhCccc
Confidence            643 2321      0012568999999999999999852  1222234566677776653

>TIGR00537 hemK_rel_arch HemK-related putative methylase

Probab=99.07  E-value=2e-09  Score=100.08  Aligned_cols=131  Identities=18%  Similarity=0.135  Sum_probs=82.6

Q ss_pred             hHHHhcCCCCCCCCeEEEECCCCcHHHHHHhhCCCEEEEEecCCChh--HHHHHHHhCC-CCeeeecccCCCCCCCccch
Q 046488          314 LIPEVLDIKPGEIRIGLDFSIGTGTFAARMREFNVTLVSAIINLGAP--FNEMIALRGL-VPLYITINQRVPFFDNTLDL  390 (480)
Q Consensus       314 ~I~~vL~l~~g~iR~VLDVGCGtG~fAa~Lae~gV~Vv~vd~d~~~~--~~~~iA~rgl-ip~~~~~ae~LPFpd~SFDl  390 (480)
                      ++.+.+...++  .+|||+|||+|.++..+++.+..+++++++....  +...++..+. +.+..++....  .+++||+
T Consensus        10 ~l~~~l~~~~~--~~vLdlG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~--~~~~fD~   85 (179)
T TIGR00537        10 LLEANLRELKP--DDVLEIGAGTGLVAIRLKGKGKCILTTDINPFAVKELRENAKLNNVGLDVVMTDLFKG--VRGKFDV   85 (179)
T ss_pred             HHHHHHHhcCC--CeEEEeCCChhHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHcCCceEEEEcccccc--cCCcccE
Confidence            44444443333  3799999999999999999877788888663211  1112222221 22233333332  3569999


Q ss_pred             heecccccCccCh------------------hcHHHHHHHHHhcccCCcEEEEeeccCChhhHHHHHHHHHHcCceee
Q 046488          391 IHTTRFLDGWIDF------------------VLLDFILYDWDRVLRPGGLLWIDSFFCAKEDMNDYLEVFKMLKYKKH  450 (480)
Q Consensus       391 V~ss~vL~h~~d~------------------~~l~~~L~EI~RVLKPGG~fiI~~f~~~~edL~~~~~~l~~lGfkkl  450 (480)
                      |+++-.+++..+.                  ..+..++.++.|+|||||.+++......  ....+.+.+++.||...
T Consensus        86 Vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~--~~~~~~~~l~~~gf~~~  161 (179)
T TIGR00537        86 ILFNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLN--GEPDTFDKLDERGFRYE  161 (179)
T ss_pred             EEECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccC--ChHHHHHHHHhCCCeEE
Confidence            9998766554321                  1135689999999999999988653322  23556678888898644

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.

>TIGR00438 rrmJ cell division protein FtsJ

Probab=99.06  E-value=2.4e-09  Score=100.49  Aligned_cols=137  Identities=20%  Similarity=0.269  Sum_probs=78.9

Q ss_pred             CCCCCCCeEEEECCCCcHHHHHHhhC---CCEEEEEecCCChhHHHHHHHhCCCCeeeecccCCC--------CCCCccc
Q 046488          321 IKPGEIRIGLDFSIGTGTFAARMREF---NVTLVSAIINLGAPFNEMIALRGLVPLYITINQRVP--------FFDNTLD  389 (480)
Q Consensus       321 l~~g~iR~VLDVGCGtG~fAa~Lae~---gV~Vv~vd~d~~~~~~~~iA~rglip~~~~~ae~LP--------Fpd~SFD  389 (480)
                      +.++.  +|||+|||+|.++..++++   ...+++++++..   .    ....+.....+....+        +++++||
T Consensus        30 i~~g~--~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~---~----~~~~i~~~~~d~~~~~~~~~l~~~~~~~~~D  100 (188)
T TIGR00438        30 IKPGD--TVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPM---K----PIENVDFIRGDFTDEEVLNKIRERVGDDKVD  100 (188)
T ss_pred             cCCCC--EEEEecCCCCHHHHHHHHHhCCCceEEEEecccc---c----cCCCceEEEeeCCChhHHHHHHHHhCCCCcc
Confidence            45554  8999999999999888765   235777776632   1    1112334444433322        5678999


Q ss_pred             hheeccccc---Ccc-----ChhcHHHHHHHHHhcccCCcEEEEeeccCChhhHHHHHHHHHHcCceeeEEEEeeccCCC
Q 046488          390 LIHTTRFLD---GWI-----DFVLLDFILYDWDRVLRPGGLLWIDSFFCAKEDMNDYLEVFKMLKYKKHKWVVVPKRDKD  461 (480)
Q Consensus       390 lV~ss~vL~---h~~-----d~~~l~~~L~EI~RVLKPGG~fiI~~f~~~~edL~~~~~~l~~lGfkkl~W~~~~k~d~~  461 (480)
                      +|++..+.+   +|.     ....++.++.++.++|||||++++..+.  .+.+..+...++. +|....-.........
T Consensus       101 ~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~~--~~~~~~~l~~l~~-~~~~~~~~~~~~~~~~  177 (188)
T TIGR00438       101 VVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVFQ--GEEIDEYLNELRK-LFEKVKVTKPQASRKR  177 (188)
T ss_pred             EEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEcc--CccHHHHHHHHHh-hhceEEEeCCCCCCcc
Confidence            999854321   111     1112356899999999999999986543  2333444444433 2432222111111125


Q ss_pred             CcceeEEE
Q 046488          462 DREVFFSA  469 (480)
Q Consensus       462 ~~E~~lsa  469 (480)
                      ..|+|+..
T Consensus       178 ~~~~~~~~  185 (188)
T TIGR00438       178 SAEVYIVA  185 (188)
T ss_pred             cceEEEEE
Confidence            67888754

>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed

Probab=99.06  E-value=8.7e-10  Score=108.48  Aligned_cols=127  Identities=24%  Similarity=0.292  Sum_probs=79.8

Q ss_pred             CeEEEECCCCcHHHHHHhhCCCE-EEEEecCCChh--HHHHHHHhCCCCeeeecccCCCCCCCccchheecccccCccCh
Q 046488          327 RIGLDFSIGTGTFAARMREFNVT-LVSAIINLGAP--FNEMIALRGLVPLYITINQRVPFFDNTLDLIHTTRFLDGWIDF  403 (480)
Q Consensus       327 R~VLDVGCGtG~fAa~Lae~gV~-Vv~vd~d~~~~--~~~~iA~rglip~~~~~ae~LPFpd~SFDlV~ss~vL~h~~d~  403 (480)
                      .+|||+|||+|.++..++..|.. ++++|++...-  +.......+ +...    ..++..+.+||+|+++....     
T Consensus       121 ~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~~~-~~~~----~~~~~~~~~fD~Vvani~~~-----  190 (250)
T PRK00517        121 KTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAELNG-VELN----VYLPQGDLKADVIVANILAN-----  190 (250)
T ss_pred             CEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcC-CCce----EEEccCCCCcCEEEEcCcHH-----
Confidence            48999999999999988887664 77887763111  111222222 2111    11233334899999864321     


Q ss_pred             hcHHHHHHHHHhcccCCcEEEEeeccCChhhHHHHHHHHHHcCceeeEEEEeeccCCCCcceeEEEEEEeC
Q 046488          404 VLLDFILYDWDRVLRPGGLLWIDSFFCAKEDMNDYLEVFKMLKYKKHKWVVVPKRDKDDREVFFSAVLEKP  474 (480)
Q Consensus       404 ~~l~~~L~EI~RVLKPGG~fiI~~f~~~~edL~~~~~~l~~lGfkkl~W~~~~k~d~~~~E~~lsav~qKP  474 (480)
                       .+..++.++.|+|||||+++++++..  ++.+.+...++..||+...-..       .++|. +.+++|+
T Consensus       191 -~~~~l~~~~~~~LkpgG~lilsgi~~--~~~~~v~~~l~~~Gf~~~~~~~-------~~~W~-~~~~~~~  250 (250)
T PRK00517        191 -PLLELAPDLARLLKPGGRLILSGILE--EQADEVLEAYEEAGFTLDEVLE-------RGEWV-ALVGKKK  250 (250)
T ss_pred             -HHHHHHHHHHHhcCCCcEEEEEECcH--hhHHHHHHHHHHCCCEEEEEEE-------eCCEE-EEEEEeC
Confidence             12468999999999999999987653  3345667788888987654211       13444 4566664

>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]

Probab=99.05  E-value=9.1e-10  Score=107.62  Aligned_cols=128  Identities=13%  Similarity=0.168  Sum_probs=93.4

Q ss_pred             HhcCCCCCCCCeEEEECCCCcHHHHHHhhCCCEEEEEecCCChhHHHHHHHhCCC--Ceee-ecccCCCCCCCccchhee
Q 046488          317 EVLDIKPGEIRIGLDFSIGTGTFAARMREFNVTLVSAIINLGAPFNEMIALRGLV--PLYI-TINQRVPFFDNTLDLIHT  393 (480)
Q Consensus       317 ~vL~l~~g~iR~VLDVGCGtG~fAa~Lae~gV~Vv~vd~d~~~~~~~~iA~rgli--p~~~-~~ae~LPFpd~SFDlV~s  393 (480)
                      ++|++.++..+-|||||||+|..+..|.+.|...+++|++  +.|++.... +.+  .+.+ +..+.+||.+++||.|++
T Consensus        42 ELLalp~~~~~~iLDIGCGsGLSg~vL~~~Gh~wiGvDiS--psML~~a~~-~e~egdlil~DMG~GlpfrpGtFDg~IS  118 (270)
T KOG1541|consen   42 ELLALPGPKSGLILDIGCGSGLSGSVLSDSGHQWIGVDIS--PSMLEQAVE-RELEGDLILCDMGEGLPFRPGTFDGVIS  118 (270)
T ss_pred             HHhhCCCCCCcEEEEeccCCCcchheeccCCceEEeecCC--HHHHHHHHH-hhhhcCeeeeecCCCCCCCCCccceEEE
Confidence            4666766556789999999999999999999878888765  345544333 332  2344 348999999999999998


Q ss_pred             cccccCcc---------ChhcHHHHHHHHHhcccCCcEEEEeeccCChhhHHHHHHHHHHcCce
Q 046488          394 TRFLDGWI---------DFVLLDFILYDWDRVLRPGGLLWIDSFFCAKEDMNDYLEVFKMLKYK  448 (480)
Q Consensus       394 s~vL~h~~---------d~~~l~~~L~EI~RVLKPGG~fiI~~f~~~~edL~~~~~~l~~lGfk  448 (480)
                      ..++. |.         +...+-.++.-++.+|++|++.++.-+-...++++.+...+...||.
T Consensus       119 ISAvQ-WLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfYpen~~q~d~i~~~a~~aGF~  181 (270)
T KOG1541|consen  119 ISAVQ-WLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFYPENEAQIDMIMQQAMKAGFG  181 (270)
T ss_pred             eeeee-eecccCccccChHHHHHHHhhhhhhhhccCceeEEEecccchHHHHHHHHHHHhhccC
Confidence            77663 32         12234567888999999999987765444555667777777788875

>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB

Probab=99.04  E-value=1e-09  Score=105.39  Aligned_cols=99  Identities=19%  Similarity=0.144  Sum_probs=72.1

Q ss_pred             eEEEECCCCcHHHHHHhhCCCEEEEEecCCCh-hHHHHHHHhCCCCe--eeecccCCCCCCCccchheecccccCccChh
Q 046488          328 IGLDFSIGTGTFAARMREFNVTLVSAIINLGA-PFNEMIALRGLVPL--YITINQRVPFFDNTLDLIHTTRFLDGWIDFV  404 (480)
Q Consensus       328 ~VLDVGCGtG~fAa~Lae~gV~Vv~vd~d~~~-~~~~~iA~rglip~--~~~~ae~LPFpd~SFDlV~ss~vL~h~~d~~  404 (480)
                      ++||+|||.|..+.+|+++|..|+++|.+..+ ....++|.+..+++  ...+.+...++ +.||+|+++.+++++..+ 
T Consensus        33 ~~LDlgcG~GRNalyLA~~G~~VtAvD~s~~al~~l~~~a~~~~l~i~~~~~Dl~~~~~~-~~yD~I~st~v~~fL~~~-  110 (192)
T PF03848_consen   33 KALDLGCGEGRNALYLASQGFDVTAVDISPVALEKLQRLAEEEGLDIRTRVADLNDFDFP-EEYDFIVSTVVFMFLQRE-  110 (192)
T ss_dssp             EEEEES-TTSHHHHHHHHTT-EEEEEESSHHHHHHHHHHHHHTT-TEEEEE-BGCCBS-T-TTEEEEEEESSGGGS-GG-
T ss_pred             cEEEcCCCCcHHHHHHHHCCCeEEEEECCHHHHHHHHHHHhhcCceeEEEEecchhcccc-CCcCEEEEEEEeccCCHH-
Confidence            79999999999999999999999999876422 12345566665554  33445666664 789999998888777644 


Q ss_pred             cHHHHHHHHHhcccCCcEEEEeec
Q 046488          405 LLDFILYDWDRVLRPGGLLWIDSF  428 (480)
Q Consensus       405 ~l~~~L~EI~RVLKPGG~fiI~~f  428 (480)
                      .+..++..|...++|||++++..+
T Consensus       111 ~~~~i~~~m~~~~~pGG~~li~~~  134 (192)
T PF03848_consen  111 LRPQIIENMKAATKPGGYNLIVTF  134 (192)
T ss_dssp             GHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             HHHHHHHHHHhhcCCcEEEEEEEe
Confidence            457899999999999999888543

When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.

>TIGR00138 gidB 16S rRNA methyltransferase GidB

Probab=99.03  E-value=1.7e-09  Score=102.15  Aligned_cols=117  Identities=15%  Similarity=0.140  Sum_probs=74.2

Q ss_pred             CeEEEECCCCcHHHHHHhhC--CCEEEEEecCCChh-HHHHH-HHhCC--CCeeeecccCCCCCCCccchheecccccCc
Q 046488          327 RIGLDFSIGTGTFAARMREF--NVTLVSAIINLGAP-FNEMI-ALRGL--VPLYITINQRVPFFDNTLDLIHTTRFLDGW  400 (480)
Q Consensus       327 R~VLDVGCGtG~fAa~Lae~--gV~Vv~vd~d~~~~-~~~~i-A~rgl--ip~~~~~ae~LPFpd~SFDlV~ss~vL~h~  400 (480)
                      .+|||+|||+|.++..++..  +..+++++.+...- +..+. ++.+.  +.++.++++.++ .+++||+|++.. +++ 
T Consensus        44 ~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~-~~~~fD~I~s~~-~~~-  120 (181)
T TIGR00138        44 KKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQ-HEEQFDVITSRA-LAS-  120 (181)
T ss_pred             CeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhcc-ccCCccEEEehh-hhC-
Confidence            48999999999999888764  35678887653211 11222 22232  334456666664 468999999855 322 


Q ss_pred             cChhcHHHHHHHHHhcccCCcEEEEeeccCChhhHHHHHHHHHHcCceeeE
Q 046488          401 IDFVLLDFILYDWDRVLRPGGLLWIDSFFCAKEDMNDYLEVFKMLKYKKHK  451 (480)
Q Consensus       401 ~d~~~l~~~L~EI~RVLKPGG~fiI~~f~~~~edL~~~~~~l~~lGfkkl~  451 (480)
                        .   ..++.++.|+|||||.+++........++....+.+...|++.+.
T Consensus       121 --~---~~~~~~~~~~LkpgG~lvi~~~~~~~~~~~~~~e~~~~~~~~~~~  166 (181)
T TIGR00138       121 --L---NVLLELTLNLLKVGGYFLAYKGKKYLDEIEEAKRKCQVLGVEPLE  166 (181)
T ss_pred             --H---HHHHHHHHHhcCCCCEEEEEcCCCcHHHHHHHHHhhhhcCceEee
Confidence              2   357889999999999998864322233344444555556776553

GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.

>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase

Probab=99.02  E-value=1.9e-09  Score=103.12  Aligned_cols=120  Identities=13%  Similarity=0.062  Sum_probs=81.6

Q ss_pred             CCeEEEECCCCcHHHHHHhhCCCEEEEEecCCChhHHHH----HHHhC---CCCeeeecccCCCCCCCccchheeccccc
Q 046488          326 IRIGLDFSIGTGTFAARMREFNVTLVSAIINLGAPFNEM----IALRG---LVPLYITINQRVPFFDNTLDLIHTTRFLD  398 (480)
Q Consensus       326 iR~VLDVGCGtG~fAa~Lae~gV~Vv~vd~d~~~~~~~~----iA~rg---lip~~~~~ae~LPFpd~SFDlV~ss~vL~  398 (480)
                      ..+|||+|||+|.++..+++.+..+++++++.  .+...    ....+   .+.+.+++.+.++   ++||+|++..+++
T Consensus        56 ~~~vLDiGcG~G~~~~~la~~~~~v~gvD~s~--~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~---~~fD~ii~~~~l~  130 (219)
T TIGR02021        56 GKRVLDAGCGTGLLSIELAKRGAIVKAVDISE--QMVQMARNRAQGRDVAGNVEFEVNDLLSLC---GEFDIVVCMDVLI  130 (219)
T ss_pred             CCEEEEEeCCCCHHHHHHHHCCCEEEEEECCH--HHHHHHHHHHHhcCCCCceEEEECChhhCC---CCcCEEEEhhHHH
Confidence            45899999999999999999888888888763  22221    11111   1234444555554   8999999999988


Q ss_pred             CccChhcHHHHHHHHHhcccCCcEEEEeecc-------------CCh--------hhHHHHHHHHHHcCceeeE
Q 046488          399 GWIDFVLLDFILYDWDRVLRPGGLLWIDSFF-------------CAK--------EDMNDYLEVFKMLKYKKHK  451 (480)
Q Consensus       399 h~~d~~~l~~~L~EI~RVLKPGG~fiI~~f~-------------~~~--------edL~~~~~~l~~lGfkkl~  451 (480)
                      |++... +..++.++.|++++|+++.+....             ...        -..+++.++++.+||+.+.
T Consensus       131 ~~~~~~-~~~~l~~i~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~v~~  203 (219)
T TIGR02021       131 HYPASD-MAKALGHLASLTKERVIFTFAPKTAWLAFLKMIGELFPGSSRATSAYLHPMTDLERALGELGWKIVR  203 (219)
T ss_pred             hCCHHH-HHHHHHHHHHHhCCCEEEEECCCchHHHHHHHHHhhCcCcccccceEEecHHHHHHHHHHcCceeee
Confidence            876433 477999999999988877664210             000        0124567788888887664

This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.

>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed

Probab=99.01  E-value=5.5e-09  Score=99.58  Aligned_cols=113  Identities=16%  Similarity=0.072  Sum_probs=76.2

Q ss_pred             CeEEEECCCCcHHHHHHhhC--CCEEEEEecCCChh--HHHHHHHhCC--CCeeeecccCCCCCCCccchheecccccCc
Q 046488          327 RIGLDFSIGTGTFAARMREF--NVTLVSAIINLGAP--FNEMIALRGL--VPLYITINQRVPFFDNTLDLIHTTRFLDGW  400 (480)
Q Consensus       327 R~VLDVGCGtG~fAa~Lae~--gV~Vv~vd~d~~~~--~~~~iA~rgl--ip~~~~~ae~LPFpd~SFDlV~ss~vL~h~  400 (480)
                      .+|||+|||+|.++..++..  +..+++++++....  +...++..+.  +.+..++++.++. +++||+|++...    
T Consensus        47 ~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~-~~~fDlV~~~~~----  121 (187)
T PRK00107         47 ERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQ-EEKFDVVTSRAV----  121 (187)
T ss_pred             CeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCC-CCCccEEEEccc----
Confidence            48999999999999988753  67888888763211  1222223332  3345566667777 789999998642    


Q ss_pred             cChhcHHHHHHHHHhcccCCcEEEEeeccCChhhHHHHHHHHHHcCceee
Q 046488          401 IDFVLLDFILYDWDRVLRPGGLLWIDSFFCAKEDMNDYLEVFKMLKYKKH  450 (480)
Q Consensus       401 ~d~~~l~~~L~EI~RVLKPGG~fiI~~f~~~~edL~~~~~~l~~lGfkkl  450 (480)
                      .+.   ..++.++.|+|||||++++.....   ....+.++.+.+|+.-.
T Consensus       122 ~~~---~~~l~~~~~~LkpGG~lv~~~~~~---~~~~l~~~~~~~~~~~~  165 (187)
T PRK00107        122 ASL---SDLVELCLPLLKPGGRFLALKGRD---PEEEIAELPKALGGKVE  165 (187)
T ss_pred             cCH---HHHHHHHHHhcCCCeEEEEEeCCC---hHHHHHHHHHhcCceEe
Confidence            222   568999999999999999864322   23445567777787633

>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated

Probab=99.01  E-value=6.8e-09  Score=97.21  Aligned_cols=123  Identities=16%  Similarity=0.131  Sum_probs=78.5

Q ss_pred             HhcCCCCCCCCeEEEECCCCcHHHHHHhhC--CCEEEEEecCCCh--hHHHHHHHhCC--CCeeeecccCCCCCCCccch
Q 046488          317 EVLDIKPGEIRIGLDFSIGTGTFAARMREF--NVTLVSAIINLGA--PFNEMIALRGL--VPLYITINQRVPFFDNTLDL  390 (480)
Q Consensus       317 ~vL~l~~g~iR~VLDVGCGtG~fAa~Lae~--gV~Vv~vd~d~~~--~~~~~iA~rgl--ip~~~~~ae~LPFpd~SFDl  390 (480)
                      +.+.+.++  .+|||+|||+|.++..++++  +..+++++++...  .+...+...+.  +.+..+... .++ +++||+
T Consensus        25 ~~l~~~~~--~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~-~~~-~~~~D~  100 (187)
T PRK08287         25 SKLELHRA--KHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAP-IEL-PGKADA  100 (187)
T ss_pred             HhcCCCCC--CEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCch-hhc-CcCCCE
Confidence            44555544  48999999999999999876  3577888765311  11112222222  222333332 233 468999


Q ss_pred             heecccccCccChhcHHHHHHHHHhcccCCcEEEEeeccCChhhHHHHHHHHHHcCceeeE
Q 046488          391 IHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDSFFCAKEDMNDYLEVFKMLKYKKHK  451 (480)
Q Consensus       391 V~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~f~~~~edL~~~~~~l~~lGfkkl~  451 (480)
                      |++.....+      +..++.++.++|||||++++....  .++...+..++++.||+.+.
T Consensus       101 v~~~~~~~~------~~~~l~~~~~~Lk~gG~lv~~~~~--~~~~~~~~~~l~~~g~~~~~  153 (187)
T PRK08287        101 IFIGGSGGN------LTAIIDWSLAHLHPGGRLVLTFIL--LENLHSALAHLEKCGVSELD  153 (187)
T ss_pred             EEECCCccC------HHHHHHHHHHhcCCCeEEEEEEec--HhhHHHHHHHHHHCCCCcce
Confidence            998765432      245889999999999999885432  23345667789999987554

>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional

Probab=98.97  E-value=7.8e-09  Score=99.43  Aligned_cols=98  Identities=15%  Similarity=0.235  Sum_probs=69.5

Q ss_pred             CeEEEECCCCcHHHHHHhhCCCEEEEEecCCChh--HHHHHHHhCC-CCeeeecccCCC-CCCCccchheecccccCccC
Q 046488          327 RIGLDFSIGTGTFAARMREFNVTLVSAIINLGAP--FNEMIALRGL-VPLYITINQRVP-FFDNTLDLIHTTRFLDGWID  402 (480)
Q Consensus       327 R~VLDVGCGtG~fAa~Lae~gV~Vv~vd~d~~~~--~~~~iA~rgl-ip~~~~~ae~LP-Fpd~SFDlV~ss~vL~h~~d  402 (480)
                      .+|||||||+|.++..+++.+..+++++++....  +...+...+. +.........++ ..++.||+|+++.++.+..+
T Consensus        50 ~~vLdiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~~~l~~~~~  129 (233)
T PRK05134         50 KRVLDVGCGGGILSESMARLGADVTGIDASEENIEVARLHALESGLKIDYRQTTAEELAAEHPGQFDVVTCMEMLEHVPD  129 (233)
T ss_pred             CeEEEeCCCCCHHHHHHHHcCCeEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhhhcCCCccEEEEhhHhhccCC
Confidence            4799999999999999998888888887653211  1111111122 222233334443 45689999999999998877


Q ss_pred             hhcHHHHHHHHHhcccCCcEEEEee
Q 046488          403 FVLLDFILYDWDRVLRPGGLLWIDS  427 (480)
Q Consensus       403 ~~~l~~~L~EI~RVLKPGG~fiI~~  427 (480)
                      .   ..++.++.++|+|||++++..
T Consensus       130 ~---~~~l~~~~~~L~~gG~l~v~~  151 (233)
T PRK05134        130 P---ASFVRACAKLVKPGGLVFFST  151 (233)
T ss_pred             H---HHHHHHHHHHcCCCcEEEEEe
Confidence            6   458999999999999998864

>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family

Probab=98.96  E-value=2.4e-09  Score=103.83  Aligned_cols=99  Identities=9%  Similarity=-0.071  Sum_probs=72.6

Q ss_pred             CeEEEECCCCcHHHHHHhhCCCEEEEEecCCChhHHHHHHHhCC------------------CCeeeecccCCCCC-CCc
Q 046488          327 RIGLDFSIGTGTFAARMREFNVTLVSAIINLGAPFNEMIALRGL------------------VPLYITINQRVPFF-DNT  387 (480)
Q Consensus       327 R~VLDVGCGtG~fAa~Lae~gV~Vv~vd~d~~~~~~~~iA~rgl------------------ip~~~~~ae~LPFp-d~S  387 (480)
                      .+|||+|||.|..+..|+++|..|++++++.  .+.++++.+..                  +.+++++...++.. ...
T Consensus        36 ~rvLd~GCG~G~da~~LA~~G~~V~gvD~S~--~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~  113 (213)
T TIGR03840        36 ARVFVPLCGKSLDLAWLAEQGHRVLGVELSE--IAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAADLGP  113 (213)
T ss_pred             CeEEEeCCCchhHHHHHHhCCCeEEEEeCCH--HHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCcccCCC
Confidence            3899999999999999999999999998763  34444333221                  23345555555432 357


Q ss_pred             cchheecccccCccChhcHHHHHHHHHhcccCCcEEEEeec
Q 046488          388 LDLIHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDSF  428 (480)
Q Consensus       388 FDlV~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~f  428 (480)
                      ||.|+-..+++|++.. ....++..+.+.|||||++++..+
T Consensus       114 fD~i~D~~~~~~l~~~-~R~~~~~~l~~lLkpgG~~ll~~~  153 (213)
T TIGR03840       114 VDAVYDRAALIALPEE-MRQRYAAHLLALLPPGARQLLITL  153 (213)
T ss_pred             cCEEEechhhccCCHH-HHHHHHHHHHHHcCCCCeEEEEEE
Confidence            9999988888887544 347799999999999998776654

Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.

>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase

Probab=98.95  E-value=5.1e-09  Score=99.64  Aligned_cols=98  Identities=15%  Similarity=0.193  Sum_probs=71.0

Q ss_pred             CCeEEEECCCCcHHHHHHhhCCCEEEEEecCCChhHHH----HHHHhCC--CCeeeecccCCCCC-CCccchheeccccc
Q 046488          326 IRIGLDFSIGTGTFAARMREFNVTLVSAIINLGAPFNE----MIALRGL--VPLYITINQRVPFF-DNTLDLIHTTRFLD  398 (480)
Q Consensus       326 iR~VLDVGCGtG~fAa~Lae~gV~Vv~vd~d~~~~~~~----~iA~rgl--ip~~~~~ae~LPFp-d~SFDlV~ss~vL~  398 (480)
                      ..+|||+|||+|.++..+++.+..+++++++.  .+..    .....+.  +.+.....+.++.. +++||+|++..+++
T Consensus        46 ~~~vLdlG~G~G~~~~~l~~~~~~v~~iD~s~--~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~l~  123 (224)
T TIGR01983        46 GLRVLDVGCGGGLLSEPLARLGANVTGIDASE--ENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKGAKSFDVVTCMEVLE  123 (224)
T ss_pred             CCeEEEECCCCCHHHHHHHhcCCeEEEEeCCH--HHHHHHHHHHHHcCCCceEEEeCCHHHhhcCCCCCccEEEehhHHH
Confidence            34799999999999999988877888887652  2222    2222222  23333445555554 48999999999998


Q ss_pred             CccChhcHHHHHHHHHhcccCCcEEEEeec
Q 046488          399 GWIDFVLLDFILYDWDRVLRPGGLLWIDSF  428 (480)
Q Consensus       399 h~~d~~~l~~~L~EI~RVLKPGG~fiI~~f  428 (480)
                      +..+.   ..++.++.++|+|||.+++..+
T Consensus       124 ~~~~~---~~~l~~~~~~L~~gG~l~i~~~  150 (224)
T TIGR01983       124 HVPDP---QAFIRACAQLLKPGGILFFSTI  150 (224)
T ss_pred             hCCCH---HHHHHHHHHhcCCCcEEEEEec
Confidence            88766   4699999999999999888643

This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.

>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]

Probab=98.93  E-value=1.2e-09  Score=109.06  Aligned_cols=93  Identities=17%  Similarity=0.127  Sum_probs=69.5

Q ss_pred             CCeEEEECCCCcHHHHHHhhCCCEEEEEecCCChhHHHHHHHhCC--CC-----------eeeecccCCCCCCCccchhe
Q 046488          326 IRIGLDFSIGTGTFAARMREFNVTLVSAIINLGAPFNEMIALRGL--VP-----------LYITINQRVPFFDNTLDLIH  392 (480)
Q Consensus       326 iR~VLDVGCGtG~fAa~Lae~gV~Vv~vd~d~~~~~~~~iA~rgl--ip-----------~~~~~ae~LPFpd~SFDlV~  392 (480)
                      .++|||+|||+|.++..|++.|..|+++|+.   +.+...|.+..  -|           .....++.+   .+.||+|+
T Consensus        90 g~~ilDvGCGgGLLSepLArlga~V~GID~s---~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~---~~~fDaVv  163 (282)
T KOG1270|consen   90 GMKILDVGCGGGLLSEPLARLGAQVTGIDAS---DDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGL---TGKFDAVV  163 (282)
T ss_pred             CceEEEeccCccccchhhHhhCCeeEeeccc---HHHHHHHHHhhhcCchhccccceeeehhhcchhhc---ccccceee
Confidence            4679999999999999999999999998865   23333443321  11           111123332   23399999


Q ss_pred             ecccccCccChhcHHHHHHHHHhcccCCcEEEEee
Q 046488          393 TTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDS  427 (480)
Q Consensus       393 ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~  427 (480)
                      |+.+++|+.++.   .++.-+.+.|||||.++|+.
T Consensus       164 csevleHV~dp~---~~l~~l~~~lkP~G~lfitt  195 (282)
T KOG1270|consen  164 CSEVLEHVKDPQ---EFLNCLSALLKPNGRLFITT  195 (282)
T ss_pred             eHHHHHHHhCHH---HHHHHHHHHhCCCCceEeee
Confidence            999999998884   59999999999999999973

>PTZ00146 fibrillarin; Provisional

Probab=98.92  E-value=1.6e-08  Score=102.86  Aligned_cols=145  Identities=15%  Similarity=0.151  Sum_probs=86.1

Q ss_pred             cCCCCCCCCeEEEECCCCcHHHHHHhhC-C--CEEEEEecCCChhH---HHHHHH-hCCCCeeeecccC---CCCCCCcc
Q 046488          319 LDIKPGEIRIGLDFSIGTGTFAARMREF-N--VTLVSAIINLGAPF---NEMIAL-RGLVPLYITINQR---VPFFDNTL  388 (480)
Q Consensus       319 L~l~~g~iR~VLDVGCGtG~fAa~Lae~-g--V~Vv~vd~d~~~~~---~~~iA~-rglip~~~~~ae~---LPFpd~SF  388 (480)
                      +.++++.  +|||+|||+|.++..+++. +  -.|++++.+  +.+   +...+. +..+..++.++..   +++...+|
T Consensus       128 l~IkpG~--~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s--~r~~~dLl~~ak~r~NI~~I~~Da~~p~~y~~~~~~v  203 (293)
T PTZ00146        128 IPIKPGS--KVLYLGAASGTTVSHVSDLVGPEGVVYAVEFS--HRSGRDLTNMAKKRPNIVPIIEDARYPQKYRMLVPMV  203 (293)
T ss_pred             eccCCCC--EEEEeCCcCCHHHHHHHHHhCCCCEEEEEECc--HHHHHHHHHHhhhcCCCEEEECCccChhhhhcccCCC
Confidence            4567774  8999999999999999986 2  257777654  222   223333 3334444444321   23345689


Q ss_pred             chheecccccCccChhcHHHHHHHHHhcccCCcEEEEe-eccC-----Chhh-HHHHHHHHHHcCceeeEEEEeeccCCC
Q 046488          389 DLIHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWID-SFFC-----AKED-MNDYLEVFKMLKYKKHKWVVVPKRDKD  461 (480)
Q Consensus       389 DlV~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~-~f~~-----~~ed-L~~~~~~l~~lGfkkl~W~~~~k~d~~  461 (480)
                      |+|++... .  ++.  ...++.++.|+|||||+|+|. .+.+     +.++ ++.-.+.++..||+.+.-......  .
T Consensus       204 DvV~~Dva-~--pdq--~~il~~na~r~LKpGG~~vI~ika~~id~g~~pe~~f~~ev~~L~~~GF~~~e~v~L~Py--~  276 (293)
T PTZ00146        204 DVIFADVA-Q--PDQ--ARIVALNAQYFLKNGGHFIISIKANCIDSTAKPEVVFASEVQKLKKEGLKPKEQLTLEPF--E  276 (293)
T ss_pred             CEEEEeCC-C--cch--HHHHHHHHHHhccCCCEEEEEEeccccccCCCHHHHHHHHHHHHHHcCCceEEEEecCCc--c
Confidence            99998664 2  222  245778999999999999984 1111     1222 222247788889997754333222  2


Q ss_pred             CcceeEEEEEEeC
Q 046488          462 DREVFFSAVLEKP  474 (480)
Q Consensus       462 ~~E~~lsav~qKP  474 (480)
                      ++-..+.++++.+
T Consensus       277 ~~h~~v~~~~~~~  289 (293)
T PTZ00146        277 RDHAVVIGVYRPV  289 (293)
T ss_pred             CCcEEEEEEEcCC
Confidence            2344445555544

>PRK13255 thiopurine S-methyltransferase; Reviewed

Probab=98.90  E-value=6.3e-09  Score=101.25  Aligned_cols=96  Identities=9%  Similarity=-0.080  Sum_probs=69.8

Q ss_pred             CeEEEECCCCcHHHHHHhhCCCEEEEEecCCChhHHHHHHHhCCC------------------CeeeecccCCCCC-CCc
Q 046488          327 RIGLDFSIGTGTFAARMREFNVTLVSAIINLGAPFNEMIALRGLV------------------PLYITINQRVPFF-DNT  387 (480)
Q Consensus       327 R~VLDVGCGtG~fAa~Lae~gV~Vv~vd~d~~~~~~~~iA~rgli------------------p~~~~~ae~LPFp-d~S  387 (480)
                      .+|||+|||.|..+..|+++|..|++++++.  .+.++++.+..+                  .+++++...++.. ...
T Consensus        39 ~rvL~~gCG~G~da~~LA~~G~~V~avD~s~--~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~~~~  116 (218)
T PRK13255         39 SRVLVPLCGKSLDMLWLAEQGHEVLGVELSE--LAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAADLAD  116 (218)
T ss_pred             CeEEEeCCCChHhHHHHHhCCCeEEEEccCH--HHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCcccCCC
Confidence            3899999999999999999999999998763  344433333222                  2234444444433 358


Q ss_pred             cchheecccccCccChhcHHHHHHHHHhcccCCcEEEE
Q 046488          388 LDLIHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWI  425 (480)
Q Consensus       388 FDlV~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI  425 (480)
                      ||+|+-..+++|++.. ....++..+.++|||||++++
T Consensus       117 fd~v~D~~~~~~l~~~-~R~~~~~~l~~lL~pgG~~~l  153 (218)
T PRK13255        117 VDAVYDRAALIALPEE-MRERYVQQLAALLPAGCRGLL  153 (218)
T ss_pred             eeEEEehHhHhhCCHH-HHHHHHHHHHHHcCCCCeEEE
Confidence            9999988888887644 347899999999999997554

>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit

Probab=98.90  E-value=1.3e-08  Score=86.89  Aligned_cols=102  Identities=20%  Similarity=0.164  Sum_probs=65.4

Q ss_pred             HhcCCCCCCCCeEEEECCCCcHHHHHHhhC--CCEEEEEecCCChh--HHHHHHHhCC--CCeeeecccC-CCCCCCccc
Q 046488          317 EVLDIKPGEIRIGLDFSIGTGTFAARMREF--NVTLVSAIINLGAP--FNEMIALRGL--VPLYITINQR-VPFFDNTLD  389 (480)
Q Consensus       317 ~vL~l~~g~iR~VLDVGCGtG~fAa~Lae~--gV~Vv~vd~d~~~~--~~~~iA~rgl--ip~~~~~ae~-LPFpd~SFD  389 (480)
                      +.+.+.++  .+|||+|||+|.++..++++  +..+++++++....  +...++..+.  +.+..+.... ++...++||
T Consensus        13 ~~~~~~~~--~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D   90 (124)
T TIGR02469        13 SKLRLRPG--DVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSLPEPD   90 (124)
T ss_pred             HHcCCCCC--CEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhcCCCC
Confidence            34445444  38999999999999999886  45778887653211  1111222222  2222233332 444457999


Q ss_pred             hheecccccCccChhcHHHHHHHHHhcccCCcEEEEe
Q 046488          390 LIHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWID  426 (480)
Q Consensus       390 lV~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~  426 (480)
                      +|++.....+      ...++.++.|+|||||+|++.
T Consensus        91 ~v~~~~~~~~------~~~~l~~~~~~Lk~gG~li~~  121 (124)
T TIGR02469        91 RVFIGGSGGL------LQEILEAIWRRLRPGGRIVLN  121 (124)
T ss_pred             EEEECCcchh------HHHHHHHHHHHcCCCCEEEEE
Confidence            9998664432      246899999999999999875

This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.

>PRK14968 putative methyltransferase; Provisional

Probab=98.89  E-value=2.2e-08  Score=92.15  Aligned_cols=121  Identities=20%  Similarity=0.161  Sum_probs=76.8

Q ss_pred             CeEEEECCCCcHHHHHHhhCCCEEEEEecCCCh--hHHHHHHHhCC----CCeeeecccCCCCCCCccchheecccccCc
Q 046488          327 RIGLDFSIGTGTFAARMREFNVTLVSAIINLGA--PFNEMIALRGL----VPLYITINQRVPFFDNTLDLIHTTRFLDGW  400 (480)
Q Consensus       327 R~VLDVGCGtG~fAa~Lae~gV~Vv~vd~d~~~--~~~~~iA~rgl----ip~~~~~ae~LPFpd~SFDlV~ss~vL~h~  400 (480)
                      .+|||+|||+|.++..+++++..+++++.+...  .+...+...+.    +.+...+... ++.+++||+|+++..+.+.
T Consensus        25 ~~vLd~G~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~d~vi~n~p~~~~  103 (188)
T PRK14968         25 DRVLEVGTGSGIVAIVAAKNGKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFE-PFRGDKFDVILFNPPYLPT  103 (188)
T ss_pred             CEEEEEccccCHHHHHHHhhcceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccc-cccccCceEEEECCCcCCC
Confidence            479999999999999999888888888765211  11112222222    3333333222 3456699999986543321


Q ss_pred             c------------------ChhcHHHHHHHHHhcccCCcEEEEeeccCChhhHHHHHHHHHHcCceee
Q 046488          401 I------------------DFVLLDFILYDWDRVLRPGGLLWIDSFFCAKEDMNDYLEVFKMLKYKKH  450 (480)
Q Consensus       401 ~------------------d~~~l~~~L~EI~RVLKPGG~fiI~~f~~~~edL~~~~~~l~~lGfkkl  450 (480)
                      .                  ....+..++.++.++|||||.+++....  ....+.+.++++..||+..
T Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~--~~~~~~l~~~~~~~g~~~~  169 (188)
T PRK14968        104 EEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSS--LTGEDEVLEYLEKLGFEAE  169 (188)
T ss_pred             CchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcc--cCCHHHHHHHHHHCCCeee
Confidence            1                  0222356899999999999998775321  1223456778888898754

>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]

Probab=98.88  E-value=1.4e-08  Score=103.49  Aligned_cols=118  Identities=19%  Similarity=0.200  Sum_probs=79.7

Q ss_pred             CCeEEEECCCCcHHHHHHhhCCCE-EEEEecCCCh--hHHHHHHHhCCCCe--eeecccCCCCCC-CccchheecccccC
Q 046488          326 IRIGLDFSIGTGTFAARMREFNVT-LVSAIINLGA--PFNEMIALRGLVPL--YITINQRVPFFD-NTLDLIHTTRFLDG  399 (480)
Q Consensus       326 iR~VLDVGCGtG~fAa~Lae~gV~-Vv~vd~d~~~--~~~~~iA~rglip~--~~~~ae~LPFpd-~SFDlV~ss~vL~h  399 (480)
                      .++|||+|||+|.++.+.++.|+. ++++|+|..+  .+.+++ +.+.++.  .......+..+. +.||+|+++- |-+
T Consensus       163 g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~eNa-~~N~v~~~~~~~~~~~~~~~~~~~~DvIVANI-LA~  240 (300)
T COG2264         163 GKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENA-RLNGVELLVQAKGFLLLEVPENGPFDVIVANI-LAE  240 (300)
T ss_pred             CCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHHHHH-HHcCCchhhhcccccchhhcccCcccEEEehh-hHH
Confidence            358999999999999999999875 8888887321  112222 2333442  222233344455 5999999864 322


Q ss_pred             ccChhcHHHHHHHHHhcccCCcEEEEeeccCChhhHHHHHHHHHHcCceeeEE
Q 046488          400 WIDFVLLDFILYDWDRVLRPGGLLWIDSFFCAKEDMNDYLEVFKMLKYKKHKW  452 (480)
Q Consensus       400 ~~d~~~l~~~L~EI~RVLKPGG~fiI~~f~~~~edL~~~~~~l~~lGfkkl~W  452 (480)
                         .  +..+..++.+.|||||++++++.....  .+...+.+.+.||.-...
T Consensus       241 ---v--l~~La~~~~~~lkpgg~lIlSGIl~~q--~~~V~~a~~~~gf~v~~~  286 (300)
T COG2264         241 ---V--LVELAPDIKRLLKPGGRLILSGILEDQ--AESVAEAYEQAGFEVVEV  286 (300)
T ss_pred             ---H--HHHHHHHHHHHcCCCceEEEEeehHhH--HHHHHHHHHhCCCeEeEE
Confidence               1  246899999999999999999866443  345666777778875543

>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific

Probab=98.88  E-value=1.2e-08  Score=98.40  Aligned_cols=132  Identities=18%  Similarity=0.171  Sum_probs=79.9

Q ss_pred             hHHHhcCCCCCCCCeEEEECCCCcHHHHHHhhC--CCEEEEEecCCChhHHH----HHHHhCC--CCeeeecccCCCCCC
Q 046488          314 LIPEVLDIKPGEIRIGLDFSIGTGTFAARMREF--NVTLVSAIINLGAPFNE----MIALRGL--VPLYITINQRVPFFD  385 (480)
Q Consensus       314 ~I~~vL~l~~g~iR~VLDVGCGtG~fAa~Lae~--gV~Vv~vd~d~~~~~~~----~iA~rgl--ip~~~~~ae~LPFpd  385 (480)
                      ++..++........+|||+|||+|.++..+++.  +..+++++++.  .+..    .+...+.  +.+..++... ++++
T Consensus        76 l~~~~l~~~~~~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~--~~~~~a~~~~~~~~~~~~~~~~~d~~~-~~~~  152 (251)
T TIGR03534        76 LVEAALERLKKGPLRVLDLGTGSGAIALALAKERPDARVTAVDISP--EALAVARKNAARLGLDNVTFLQSDWFE-PLPG  152 (251)
T ss_pred             HHHHHHHhcccCCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCH--HHHHHHHHHHHHcCCCeEEEEECchhc-cCcC
Confidence            444444322222347999999999999999986  56778887652  2222    1112222  2333444333 4668


Q ss_pred             Cccchheeccccc------CccCh-----------------hcHHHHHHHHHhcccCCcEEEEeeccCChhhHHHHHHHH
Q 046488          386 NTLDLIHTTRFLD------GWIDF-----------------VLLDFILYDWDRVLRPGGLLWIDSFFCAKEDMNDYLEVF  442 (480)
Q Consensus       386 ~SFDlV~ss~vL~------h~~d~-----------------~~l~~~L~EI~RVLKPGG~fiI~~f~~~~edL~~~~~~l  442 (480)
                      ++||+|+++--+.      .+...                 .....++.++.++|||||.+++..-.   .+.+.+.+++
T Consensus       153 ~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~~---~~~~~~~~~l  229 (251)
T TIGR03534       153 GKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIGY---DQGEAVRALF  229 (251)
T ss_pred             CceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEECc---cHHHHHHHHH
Confidence            8999999842211      11110                 01135789999999999999885322   2234566778


Q ss_pred             HHcCceeeE
Q 046488          443 KMLKYKKHK  451 (480)
Q Consensus       443 ~~lGfkkl~  451 (480)
                      +..||+.+.
T Consensus       230 ~~~gf~~v~  238 (251)
T TIGR03534       230 EAAGFADVE  238 (251)
T ss_pred             HhCCCCceE
Confidence            888987654

Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.

>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase

Probab=98.88  E-value=9.2e-09  Score=97.48  Aligned_cols=119  Identities=19%  Similarity=0.324  Sum_probs=72.8

Q ss_pred             CeEEEECCCCcHHHHHHhhC--CCEEEEEecCCC--hhHHHHHHHhCC--CCeeeecccCCC---CCCCccchheecccc
Q 046488          327 RIGLDFSIGTGTFAARMREF--NVTLVSAIINLG--APFNEMIALRGL--VPLYITINQRVP---FFDNTLDLIHTTRFL  397 (480)
Q Consensus       327 R~VLDVGCGtG~fAa~Lae~--gV~Vv~vd~d~~--~~~~~~iA~rgl--ip~~~~~ae~LP---Fpd~SFDlV~ss~vL  397 (480)
                      .+|||||||+|.++..++.+  +..+++++++..  ..+...+...+.  +.+..+++..++   +++++||.|++.+. 
T Consensus        18 ~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~p-   96 (194)
T TIGR00091        18 PLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLNFP-   96 (194)
T ss_pred             ceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEECC-
Confidence            47999999999999999886  456777776531  112222223332  334445554443   56779999997654 


Q ss_pred             cCccCh------hcHHHHHHHHHhcccCCcEEEEeeccCChhh-HHHHHHHHHHcC-cee
Q 046488          398 DGWIDF------VLLDFILYDWDRVLRPGGLLWIDSFFCAKED-MNDYLEVFKMLK-YKK  449 (480)
Q Consensus       398 ~h~~d~------~~l~~~L~EI~RVLKPGG~fiI~~f~~~~ed-L~~~~~~l~~lG-fkk  449 (480)
                      .+|.+.      .....++.++.|+|||||.|++..   ..++ .+.+.+.+...+ |..
T Consensus        97 dpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~t---d~~~~~~~~~~~~~~~~~f~~  153 (194)
T TIGR00091        97 DPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKT---DNEPLFEDMLKVLSENDLFEN  153 (194)
T ss_pred             CcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEe---CCHHHHHHHHHHHHhCCCeEe
Confidence            234321      011358999999999999998753   1222 233445555544 543

In E. coli, this protein flanks the DNA repair protein MutY, also called micA.

>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional

Probab=98.87  E-value=4.1e-08  Score=93.14  Aligned_cols=126  Identities=17%  Similarity=0.191  Sum_probs=78.6

Q ss_pred             cCCCCCCCCeEEEECCCCcHHHHHHhhC---CCEEEEEecCCCh--hHHHHHHHhCC---CCeeeecccC-CCCCCCccc
Q 046488          319 LDIKPGEIRIGLDFSIGTGTFAARMREF---NVTLVSAIINLGA--PFNEMIALRGL---VPLYITINQR-VPFFDNTLD  389 (480)
Q Consensus       319 L~l~~g~iR~VLDVGCGtG~fAa~Lae~---gV~Vv~vd~d~~~--~~~~~iA~rgl---ip~~~~~ae~-LPFpd~SFD  389 (480)
                      +.+.++.  +|||+|||+|.++..++..   +..+++++.+...  .+.+.+...+.   +.+..++... ++..++.||
T Consensus        36 l~~~~~~--~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~~D  113 (198)
T PRK00377         36 LRLRKGD--MILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINEKFD  113 (198)
T ss_pred             cCCCCcC--EEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCCCCC
Confidence            4455554  8999999999999887653   3567787765311  11112222231   2233344333 444457899


Q ss_pred             hheecccccCccChhcHHHHHHHHHhcccCCcEEEEeeccCChhhHHHHHHHHHHcCce--eeEEEE
Q 046488          390 LIHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDSFFCAKEDMNDYLEVFKMLKYK--KHKWVV  454 (480)
Q Consensus       390 lV~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~f~~~~edL~~~~~~l~~lGfk--kl~W~~  454 (480)
                      +|++...   ...   +..++.++.|+|||||++++..  ..-+.+....+.++.+||.  ...|..
T Consensus       114 ~V~~~~~---~~~---~~~~l~~~~~~LkpgG~lv~~~--~~~~~~~~~~~~l~~~g~~~~~~~~~~  172 (198)
T PRK00377        114 RIFIGGG---SEK---LKEIISASWEIIKKGGRIVIDA--ILLETVNNALSALENIGFNLEITEVII  172 (198)
T ss_pred             EEEECCC---ccc---HHHHHHHHHHHcCCCcEEEEEe--ecHHHHHHHHHHHHHcCCCeEEEEEeh
Confidence            9997432   112   2568999999999999998732  2344566777888888974  234544

>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=98.87  E-value=1.2e-08  Score=97.56  Aligned_cols=99  Identities=25%  Similarity=0.203  Sum_probs=65.0

Q ss_pred             HhcCCCCCCCCeEEEECCCCcHHHHHHhhC---CCEEEEEecCCCh--hHHHHHHHhCC---CCeeeecccCCCCCCCcc
Q 046488          317 EVLDIKPGEIRIGLDFSIGTGTFAARMREF---NVTLVSAIINLGA--PFNEMIALRGL---VPLYITINQRVPFFDNTL  388 (480)
Q Consensus       317 ~vL~l~~g~iR~VLDVGCGtG~fAa~Lae~---gV~Vv~vd~d~~~--~~~~~iA~rgl---ip~~~~~ae~LPFpd~SF  388 (480)
                      +.+++.++.  +|||+|||+|.+++.+++.   +-.+++++.+...  .+.+.+...+.   +.+..+++...+...++|
T Consensus        66 ~~l~~~~~~--~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~~~~f  143 (205)
T PRK13944         66 ELIEPRPGM--KILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEKHAPF  143 (205)
T ss_pred             HhcCCCCCC--EEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCccCCCc
Confidence            455555553  8999999999999888864   3467777765211  11222222232   234455554444456799


Q ss_pred             chheecccccCccChhcHHHHHHHHHhcccCCcEEEEe
Q 046488          389 DLIHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWID  426 (480)
Q Consensus       389 DlV~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~  426 (480)
                      |+|++..++.+         +..++.|+|||||++++.
T Consensus       144 D~Ii~~~~~~~---------~~~~l~~~L~~gG~lvi~  172 (205)
T PRK13944        144 DAIIVTAAAST---------IPSALVRQLKDGGVLVIP  172 (205)
T ss_pred             cEEEEccCcch---------hhHHHHHhcCcCcEEEEE
Confidence            99999877643         335788999999999874

>TIGR00406 prmA ribosomal protein L11 methyltransferase

Probab=98.87  E-value=1.7e-08  Score=101.58  Aligned_cols=113  Identities=12%  Similarity=0.231  Sum_probs=71.5

Q ss_pred             CeEEEECCCCcHHHHHHhhCCC-EEEEEecCCCh--hHHHHHHHhCCCCeee-ecccCCCCCCCccchheecccccCccC
Q 046488          327 RIGLDFSIGTGTFAARMREFNV-TLVSAIINLGA--PFNEMIALRGLVPLYI-TINQRVPFFDNTLDLIHTTRFLDGWID  402 (480)
Q Consensus       327 R~VLDVGCGtG~fAa~Lae~gV-~Vv~vd~d~~~--~~~~~iA~rglip~~~-~~ae~LPFpd~SFDlV~ss~vL~h~~d  402 (480)
                      .+|||+|||+|.++..+++.|. .+++++++..+  .+.......+.-.... ......++.++.||+|+++....    
T Consensus       161 ~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~~~~~fDlVvan~~~~----  236 (288)
T TIGR00406       161 KNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQPIEGKADVIVANILAE----  236 (288)
T ss_pred             CEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccccCCCceEEEEecCHH----
Confidence            4899999999999999888764 67888766311  1111222222211111 11223455678999999865432    


Q ss_pred             hhcHHHHHHHHHhcccCCcEEEEeeccCChhhHHHHHHHHHHcCce
Q 046488          403 FVLLDFILYDWDRVLRPGGLLWIDSFFCAKEDMNDYLEVFKMLKYK  448 (480)
Q Consensus       403 ~~~l~~~L~EI~RVLKPGG~fiI~~f~~~~edL~~~~~~l~~lGfk  448 (480)
                        .+..++.++.|+|||||+++++.+.  .++.+.+.+.++.. |+
T Consensus       237 --~l~~ll~~~~~~LkpgG~li~sgi~--~~~~~~v~~~~~~~-f~  277 (288)
T TIGR00406       237 --VIKELYPQFSRLVKPGGWLILSGIL--ETQAQSVCDAYEQG-FT  277 (288)
T ss_pred             --HHHHHHHHHHHHcCCCcEEEEEeCc--HhHHHHHHHHHHcc-Cc
Confidence              1246899999999999999998764  23344555565553 54

Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.

>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences

Probab=98.86  E-value=3.4e-08  Score=100.54  Aligned_cols=129  Identities=20%  Similarity=0.281  Sum_probs=81.8

Q ss_pred             CeEEEECCCCcHHHHHHhhCCC-EEEEEecCCCh--hHHHHHHHhCCCCeeeecccCCCCCCCccchheecccccCccCh
Q 046488          327 RIGLDFSIGTGTFAARMREFNV-TLVSAIINLGA--PFNEMIALRGLVPLYITINQRVPFFDNTLDLIHTTRFLDGWIDF  403 (480)
Q Consensus       327 R~VLDVGCGtG~fAa~Lae~gV-~Vv~vd~d~~~--~~~~~iA~rglip~~~~~ae~LPFpd~SFDlV~ss~vL~h~~d~  403 (480)
                      .+|||+|||||.++...+..|. .|+++|.|..+  .+.+.++..+.-. ..............||+|+++-..     +
T Consensus       163 ~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N~~~~-~~~v~~~~~~~~~~~dlvvANI~~-----~  236 (295)
T PF06325_consen  163 KRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAELNGVED-RIEVSLSEDLVEGKFDLVVANILA-----D  236 (295)
T ss_dssp             SEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHTT-TT-CEEESCTSCTCCS-EEEEEEES-H-----H
T ss_pred             CEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHcCCCe-eEEEEEecccccccCCEEEECCCH-----H
Confidence            4899999999999999999886 58888877432  1233333444322 222112233446999999985432     1


Q ss_pred             hcHHHHHHHHHhcccCCcEEEEeeccCChhhHHHHHHHHHHcCceeeEEEEeeccCCCCcceeEEEEEEe
Q 046488          404 VLLDFILYDWDRVLRPGGLLWIDSFFCAKEDMNDYLEVFKMLKYKKHKWVVVPKRDKDDREVFFSAVLEK  473 (480)
Q Consensus       404 ~~l~~~L~EI~RVLKPGG~fiI~~f~~~~edL~~~~~~l~~lGfkkl~W~~~~k~d~~~~E~~lsav~qK  473 (480)
                       .+..++.++.++|+|||++++++....  +.+.+.+.+++ ||+.+....       .++|. +.+++|
T Consensus       237 -vL~~l~~~~~~~l~~~G~lIlSGIl~~--~~~~v~~a~~~-g~~~~~~~~-------~~~W~-~l~~~K  294 (295)
T PF06325_consen  237 -VLLELAPDIASLLKPGGYLILSGILEE--QEDEVIEAYKQ-GFELVEERE-------EGEWV-ALVFKK  294 (295)
T ss_dssp             -HHHHHHHHCHHHEEEEEEEEEEEEEGG--GHHHHHHHHHT-TEEEEEEEE-------ETTEE-EEEEEE
T ss_pred             -HHHHHHHHHHHhhCCCCEEEEccccHH--HHHHHHHHHHC-CCEEEEEEE-------ECCEE-EEEEEe
Confidence             134588899999999999999988754  33455666666 887554332       14555 445665

Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....

>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated

Probab=98.84  E-value=2.5e-08  Score=95.16  Aligned_cols=95  Identities=14%  Similarity=0.086  Sum_probs=65.7

Q ss_pred             CeEEEECCCCcHHHHHHhhCCCEEEEEecCCCh--hHHHHHHHhCC---CCeeeecccCCCCCCCccchheecccccCcc
Q 046488          327 RIGLDFSIGTGTFAARMREFNVTLVSAIINLGA--PFNEMIALRGL---VPLYITINQRVPFFDNTLDLIHTTRFLDGWI  401 (480)
Q Consensus       327 R~VLDVGCGtG~fAa~Lae~gV~Vv~vd~d~~~--~~~~~iA~rgl---ip~~~~~ae~LPFpd~SFDlV~ss~vL~h~~  401 (480)
                      .+|||+|||+|.++..|++.+..+++++++...  .+.......+.   +.+..+   .++..+++||+|++..+++|+.
T Consensus        65 ~~vLDvGcG~G~~~~~l~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~---d~~~~~~~fD~v~~~~~l~~~~  141 (230)
T PRK07580         65 LRILDAGCGVGSLSIPLARRGAKVVASDISPQMVEEARERAPEAGLAGNITFEVG---DLESLLGRFDTVVCLDVLIHYP  141 (230)
T ss_pred             CEEEEEeCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEc---CchhccCCcCEEEEcchhhcCC
Confidence            489999999999999999988888888765211  11112222221   222222   2666789999999999998887


Q ss_pred             ChhcHHHHHHHHHhcccCCcEEEE
Q 046488          402 DFVLLDFILYDWDRVLRPGGLLWI  425 (480)
Q Consensus       402 d~~~l~~~L~EI~RVLKPGG~fiI  425 (480)
                      ++. +..++.++.+.+++|+.+.+
T Consensus       142 ~~~-~~~~l~~l~~~~~~~~~i~~  164 (230)
T PRK07580        142 QED-AARMLAHLASLTRGSLIFTF  164 (230)
T ss_pred             HHH-HHHHHHHHHhhcCCeEEEEE
Confidence            554 46789999998866665443

>TIGR01177 conserved hypothetical protein TIGR01177

Probab=98.82  E-value=1.9e-08  Score=102.84  Aligned_cols=123  Identities=15%  Similarity=0.107  Sum_probs=80.3

Q ss_pred             hcCCCCCCCCeEEEECCCCcHHHHHHhhCCCEEEEEecCCCh--hHHHHHHHhCC--CCeeeecccCCCCCCCccchhee
Q 046488          318 VLDIKPGEIRIGLDFSIGTGTFAARMREFNVTLVSAIINLGA--PFNEMIALRGL--VPLYITINQRVPFFDNTLDLIHT  393 (480)
Q Consensus       318 vL~l~~g~iR~VLDVGCGtG~fAa~Lae~gV~Vv~vd~d~~~--~~~~~iA~rgl--ip~~~~~ae~LPFpd~SFDlV~s  393 (480)
                      +..++++.  +|||.|||||+++..++..+..+++++.+...  .+...+...+.  +.+..+++..+|+++++||+|++
T Consensus       177 l~~~~~g~--~vLDp~cGtG~~lieaa~~~~~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~~~~~~~D~Iv~  254 (329)
T TIGR01177       177 LARVTEGD--RVLDPFCGTGGFLIEAGLMGAKVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLPLSSESVDAIAT  254 (329)
T ss_pred             HhCCCCcC--EEEECCCCCCHHHHHHHHhCCeEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCCcccCCCCEEEE
Confidence            34455554  89999999999998888788888888876311  11112222232  33455678889999999999998


Q ss_pred             ccccc-----Ccc-ChhcHHHHHHHHHhcccCCcEEEEeeccCChhhHHHHHHHHHHcCc
Q 046488          394 TRFLD-----GWI-DFVLLDFILYDWDRVLRPGGLLWIDSFFCAKEDMNDYLEVFKMLKY  447 (480)
Q Consensus       394 s~vL~-----h~~-d~~~l~~~L~EI~RVLKPGG~fiI~~f~~~~edL~~~~~~l~~lGf  447 (480)
                      .--..     ... .......++.++.|+|||||++++..  ....+   +.+.++..||
T Consensus       255 dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~--~~~~~---~~~~~~~~g~  309 (329)
T TIGR01177       255 DPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAV--PTRID---LESLAEDAFR  309 (329)
T ss_pred             CCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEE--cCCCC---HHHHHhhcCc
Confidence            52110     000 11223579999999999999987742  22223   3356777888

This family is found exclusively in the Archaea.

>KOG3010 consensus Methyltransferase [General function prediction only]

Probab=98.82  E-value=1.1e-08  Score=101.09  Aligned_cols=101  Identities=21%  Similarity=0.377  Sum_probs=70.3

Q ss_pred             HhcCCCCCCCCeEEEECCCCcHHHHHHhhCCCEEEEEecCCChhHHHHHHHhCCCCee------eecccCCCCC--CCcc
Q 046488          317 EVLDIKPGEIRIGLDFSIGTGTFAARMREFNVTLVSAIINLGAPFNEMIALRGLVPLY------ITINQRVPFF--DNTL  388 (480)
Q Consensus       317 ~vL~l~~g~iR~VLDVGCGtG~fAa~Lae~gV~Vv~vd~d~~~~~~~~iA~rglip~~------~~~ae~LPFp--d~SF  388 (480)
                      .+....+++ +.++|+|||+|.-+..++++--.|+++|++   +.+.+++.+.--..+      ....+-.++.  ++|.
T Consensus        26 ~ia~~~~~h-~~a~DvG~G~Gqa~~~iae~~k~VIatD~s---~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~e~SV  101 (261)
T KOG3010|consen   26 KIASRTEGH-RLAWDVGTGNGQAARGIAEHYKEVIATDVS---EAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGGEESV  101 (261)
T ss_pred             HHHhhCCCc-ceEEEeccCCCcchHHHHHhhhhheeecCC---HHHHHHhhcCCCcccccCCccccccccccccCCCcce
Confidence            444455554 589999999997777788876677888765   445556655432222      2223334444  9999


Q ss_pred             chheecccccCccChhcHHHHHHHHHhcccCCc-EEEE
Q 046488          389 DLIHTTRFLDGWIDFVLLDFILYDWDRVLRPGG-LLWI  425 (480)
Q Consensus       389 DlV~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG-~fiI  425 (480)
                      |+|+|..|+ ||-+.   +.++++++|||||.| .+.+
T Consensus       102 DlI~~Aqa~-HWFdl---e~fy~~~~rvLRk~Gg~iav  135 (261)
T KOG3010|consen  102 DLITAAQAV-HWFDL---ERFYKEAYRVLRKDGGLIAV  135 (261)
T ss_pred             eeehhhhhH-Hhhch---HHHHHHHHHHcCCCCCEEEE
Confidence            999999998 57665   469999999999877 5444

>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]

Probab=98.80  E-value=3.2e-08  Score=98.88  Aligned_cols=139  Identities=20%  Similarity=0.259  Sum_probs=91.2

Q ss_pred             hhhhhHHHhcCCCCCCCCeEEEECCCCcHHHHHHhhCCCEEEEEecCCChhHHHHHHHhCCCCeeeecccCCCCCCCccc
Q 046488          310 TADFLIPEVLDIKPGEIRIGLDFSIGTGTFAARMREFNVTLVSAIINLGAPFNEMIALRGLVPLYITINQRVPFFDNTLD  389 (480)
Q Consensus       310 ~ad~~I~~vL~l~~g~iR~VLDVGCGtG~fAa~Lae~gV~Vv~vd~d~~~~~~~~iA~rglip~~~~~ae~LPFpd~SFD  389 (480)
                      -.|.+|.. |...+++ ..|-|+|||-+.+|.   ...-.|.++|+..   .     .   -.+...+..++|.+|+|.|
T Consensus       167 Pld~ii~~-ik~r~~~-~vIaD~GCGEakiA~---~~~~kV~SfDL~a---~-----~---~~V~~cDm~~vPl~d~svD  230 (325)
T KOG3045|consen  167 PLDVIIRK-IKRRPKN-IVIADFGCGEAKIAS---SERHKVHSFDLVA---V-----N---ERVIACDMRNVPLEDESVD  230 (325)
T ss_pred             hHHHHHHH-HHhCcCc-eEEEecccchhhhhh---ccccceeeeeeec---C-----C---CceeeccccCCcCccCccc
Confidence            34545543 3334454 379999999999887   2222455555421   1     0   1134455677999999999


Q ss_pred             hheecccccCccChhcHHHHHHHHHhcccCCcEEEEeeccCChhhHHHHHHHHHHcCceeeEEEEeeccCCCCcceeEEE
Q 046488          390 LIHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDSFFCAKEDMNDYLEVFKMLKYKKHKWVVVPKRDKDDREVFFSA  469 (480)
Q Consensus       390 lV~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~f~~~~edL~~~~~~l~~lGfkkl~W~~~~k~d~~~~E~~lsa  469 (480)
                      ++++...|+  ..+  +..++.|++|||||||.+||......-.+...+...+..+||...+-..       ....|...
T Consensus       231 vaV~CLSLM--gtn--~~df~kEa~RiLk~gG~l~IAEv~SRf~dv~~f~r~l~~lGF~~~~~d~-------~n~~F~lf  299 (325)
T KOG3045|consen  231 VAVFCLSLM--GTN--LADFIKEANRILKPGGLLYIAEVKSRFSDVKGFVRALTKLGFDVKHKDV-------SNKYFTLF  299 (325)
T ss_pred             EEEeeHhhh--ccc--HHHHHHHHHHHhccCceEEEEehhhhcccHHHHHHHHHHcCCeeeehhh-------hcceEEEE
Confidence            999654443  322  2569999999999999999986555445666788899999997432211       23456666


Q ss_pred             EEEeCC
Q 046488          470 VLEKPP  475 (480)
Q Consensus       470 v~qKP~  475 (480)
                      .++|+.
T Consensus       300 efkK~~  305 (325)
T KOG3045|consen  300 EFKKTP  305 (325)
T ss_pred             EEecCC
Confidence            778875

>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=98.78  E-value=2.6e-08  Score=95.93  Aligned_cols=99  Identities=22%  Similarity=0.163  Sum_probs=65.5

Q ss_pred             HhcCCCCCCCCeEEEECCCCcHHHHHHhhC---CCEEEEEecCCCh--hHHHHHHHhCC--CCeeeecccCCCCCCCccc
Q 046488          317 EVLDIKPGEIRIGLDFSIGTGTFAARMREF---NVTLVSAIINLGA--PFNEMIALRGL--VPLYITINQRVPFFDNTLD  389 (480)
Q Consensus       317 ~vL~l~~g~iR~VLDVGCGtG~fAa~Lae~---gV~Vv~vd~d~~~--~~~~~iA~rgl--ip~~~~~ae~LPFpd~SFD  389 (480)
                      +.+.+.++.  +|||||||+|.+++.+++.   +..+++++++...  .+...++..+.  +.+..+++...+.+++.||
T Consensus        70 ~~l~~~~g~--~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~~~~~~fD  147 (212)
T PRK13942         70 ELLDLKEGM--KVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGYEENAPYD  147 (212)
T ss_pred             HHcCCCCcC--EEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCcCCCcC
Confidence            455666664  8999999999999888875   2477888765211  11112222232  3344555555555678999


Q ss_pred             hheecccccCccChhcHHHHHHHHHhcccCCcEEEEe
Q 046488          390 LIHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWID  426 (480)
Q Consensus       390 lV~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~  426 (480)
                      +|++...+.+         +..++.+.|||||++++.
T Consensus       148 ~I~~~~~~~~---------~~~~l~~~LkpgG~lvi~  175 (212)
T PRK13942        148 RIYVTAAGPD---------IPKPLIEQLKDGGIMVIP  175 (212)
T ss_pred             EEEECCCccc---------chHHHHHhhCCCcEEEEE
Confidence            9998766533         234677899999998874

>KOG2361 consensus Predicted methyltransferase [General function prediction only]

Probab=98.75  E-value=7.6e-08  Score=95.26  Aligned_cols=156  Identities=15%  Similarity=0.217  Sum_probs=98.2

Q ss_pred             HhcCCCCCCCCeEEEECCCCcHHHHHHhhC----CCEEEEEecCCChhHHHHHHHhC------CCCeeeec---ccCCCC
Q 046488          317 EVLDIKPGEIRIGLDFSIGTGTFAARMREF----NVTLVSAIINLGAPFNEMIALRG------LVPLYITI---NQRVPF  383 (480)
Q Consensus       317 ~vL~l~~g~iR~VLDVGCGtG~fAa~Lae~----gV~Vv~vd~d~~~~~~~~iA~rg------lip~~~~~---ae~LPF  383 (480)
                      +++........+||+||||.|.....+.+-    +..+++.+-+  +.+.+......      ....+.+.   .-.-|.
T Consensus        63 el~~~~~~~~~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfs--p~Ai~~vk~~~~~~e~~~~afv~Dlt~~~~~~~~  140 (264)
T KOG2361|consen   63 ELLPVDEKSAETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFS--PRAIELVKKSSGYDESRVEAFVWDLTSPSLKEPP  140 (264)
T ss_pred             HhhCccccChhhheeeccCCCcccchhhhcCCCCCeEEEEcCCC--hHHHHHHHhccccchhhhcccceeccchhccCCC
Confidence            455544333337999999999988877764    2556655533  23333222211      11222222   224567


Q ss_pred             CCCccchheecccccCccChhcHHHHHHHHHhcccCCcEEEEeeccCCh--------------------hh-------HH
Q 046488          384 FDNTLDLIHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDSFFCAK--------------------ED-------MN  436 (480)
Q Consensus       384 pd~SFDlV~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~f~~~~--------------------ed-------L~  436 (480)
                      ..+++|+|++.++|.-+.+. .+..++..++|+|||||.+++.+|..-.                    +.       .+
T Consensus       141 ~~~svD~it~IFvLSAi~pe-k~~~a~~nl~~llKPGG~llfrDYg~~DlaqlRF~~~~~i~~nfYVRgDGT~~YfF~~e  219 (264)
T KOG2361|consen  141 EEGSVDIITLIFVLSAIHPE-KMQSVIKNLRTLLKPGGSLLFRDYGRYDLAQLRFKKGQCISENFYVRGDGTRAYFFTEE  219 (264)
T ss_pred             CcCccceEEEEEEEeccChH-HHHHHHHHHHHHhCCCcEEEEeecccchHHHHhccCCceeecceEEccCCceeeeccHH
Confidence            89999999999999877644 4688999999999999999987432211                    10       24


Q ss_pred             HHHHHHHHcCceeeEEEE------eeccCCCCcceeEEEEEEeCC
Q 046488          437 DYLEVFKMLKYKKHKWVV------VPKRDKDDREVFFSAVLEKPP  475 (480)
Q Consensus       437 ~~~~~l~~lGfkkl~W~~------~~k~d~~~~E~~lsav~qKP~  475 (480)
                      ++.+++...||....-.+      ..+..-...-+.+-++|+||.
T Consensus       220 eL~~~f~~agf~~~~~~~~~rl~vNr~k~lkm~Rvwvq~~f~k~~  264 (264)
T KOG2361|consen  220 ELDELFTKAGFEEVQLEVDCRLLVNRKKQLKMYRVWVQAKFQKPL  264 (264)
T ss_pred             HHHHHHHhcccchhcccceeeeeeehhccCccceEEEEEEeecCC
Confidence            567889999997543211      111112456677889999984

>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase

Probab=98.75  E-value=3.3e-08  Score=94.88  Aligned_cols=99  Identities=24%  Similarity=0.149  Sum_probs=63.5

Q ss_pred             HhcCCCCCCCCeEEEECCCCcHHHHHHhhCC---CEEEEEecCCC--hhHHHHHHHhCC--CCeeeecccCCCCCCCccc
Q 046488          317 EVLDIKPGEIRIGLDFSIGTGTFAARMREFN---VTLVSAIINLG--APFNEMIALRGL--VPLYITINQRVPFFDNTLD  389 (480)
Q Consensus       317 ~vL~l~~g~iR~VLDVGCGtG~fAa~Lae~g---V~Vv~vd~d~~--~~~~~~iA~rgl--ip~~~~~ae~LPFpd~SFD  389 (480)
                      +.+.+.++.  +|||+|||+|.+++.|++..   ..+++++.+..  ..+...+...+.  +.+..++........+.||
T Consensus        71 ~~l~~~~~~--~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~~~~~fD  148 (215)
T TIGR00080        71 ELLELKPGM--KVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWEPLAPYD  148 (215)
T ss_pred             HHhCCCCcC--EEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCcccCCCC
Confidence            455666654  89999999999999998762   24777775521  111122222232  3344455444434457899


Q ss_pred             hheecccccCccChhcHHHHHHHHHhcccCCcEEEEe
Q 046488          390 LIHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWID  426 (480)
Q Consensus       390 lV~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~  426 (480)
                      +|++.....+         +..++.+.|||||++++.
T Consensus       149 ~Ii~~~~~~~---------~~~~~~~~L~~gG~lv~~  176 (215)
T TIGR00080       149 RIYVTAAGPK---------IPEALIDQLKEGGILVMP  176 (215)
T ss_pred             EEEEcCCccc---------ccHHHHHhcCcCcEEEEE
Confidence            9998765432         445688999999998874

Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.

>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional

Probab=98.73  E-value=7.7e-08  Score=99.64  Aligned_cols=99  Identities=18%  Similarity=0.187  Sum_probs=65.0

Q ss_pred             eEEEECCCCcHHHHHHhhC--CCEEEEEecCCChh--HHHHHHHhCCCCeeeecccCCCCCCCccchheecccccCcc--
Q 046488          328 IGLDFSIGTGTFAARMREF--NVTLVSAIINLGAP--FNEMIALRGLVPLYITINQRVPFFDNTLDLIHTTRFLDGWI--  401 (480)
Q Consensus       328 ~VLDVGCGtG~fAa~Lae~--gV~Vv~vd~d~~~~--~~~~iA~rglip~~~~~ae~LPFpd~SFDlV~ss~vL~h~~--  401 (480)
                      +|||+|||+|.++..++++  +..+++++++..+-  +...++..+ +....-...-+...++.||+|+|+-.+|...  
T Consensus       199 ~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~-l~~~~~~~D~~~~~~~~fDlIvsNPPFH~g~~~  277 (342)
T PRK09489        199 KVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANG-LEGEVFASNVFSDIKGRFDMIISNPPFHDGIQT  277 (342)
T ss_pred             eEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC-CCCEEEEcccccccCCCccEEEECCCccCCccc
Confidence            6999999999999999986  35777777652111  111222222 3222111122333478999999988776432  


Q ss_pred             ChhcHHHHHHHHHhcccCCcEEEEee
Q 046488          402 DFVLLDFILYDWDRVLRPGGLLWIDS  427 (480)
Q Consensus       402 d~~~l~~~L~EI~RVLKPGG~fiI~~  427 (480)
                      +....+.++.++.|.|||||.++|..
T Consensus       278 ~~~~~~~~i~~a~~~LkpgG~L~iVa  303 (342)
T PRK09489        278 SLDAAQTLIRGAVRHLNSGGELRIVA  303 (342)
T ss_pred             cHHHHHHHHHHHHHhcCcCCEEEEEE
Confidence            22334679999999999999998863

>PRK10901 16S rRNA methyltransferase B; Provisional

Probab=98.70  E-value=3.7e-07  Score=96.84  Aligned_cols=159  Identities=21%  Similarity=0.255  Sum_probs=90.8

Q ss_pred             hhhhHHHhcCCCCCCCCeEEEECCCCcHHHHHHhhCC--CEEEEEecCCCh--hHHHHHHHhCC-CCeeeecccCCC--C
Q 046488          311 ADFLIPEVLDIKPGEIRIGLDFSIGTGTFAARMREFN--VTLVSAIINLGA--PFNEMIALRGL-VPLYITINQRVP--F  383 (480)
Q Consensus       311 ad~~I~~vL~l~~g~iR~VLDVGCGtG~fAa~Lae~g--V~Vv~vd~d~~~--~~~~~iA~rgl-ip~~~~~ae~LP--F  383 (480)
                      +..++...++..++.  +|||+|||+|..+..++++.  ..+++++.+...  .+...+...|. +.+..+++..++  +
T Consensus       232 ~s~~~~~~l~~~~g~--~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~~~  309 (427)
T PRK10901        232 AAQLAATLLAPQNGE--RVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLKATVIVGDARDPAQWW  309 (427)
T ss_pred             HHHHHHHHcCCCCCC--EEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccchhhc
Confidence            344555667766664  89999999999999998863  577777765311  11112222221 223344555443  3


Q ss_pred             CCCccchhee----cc--cccC-----cc-Chh-------cHHHHHHHHHhcccCCcEEEEeec-cCChhhHHHHHHHHH
Q 046488          384 FDNTLDLIHT----TR--FLDG-----WI-DFV-------LLDFILYDWDRVLRPGGLLWIDSF-FCAKEDMNDYLEVFK  443 (480)
Q Consensus       384 pd~SFDlV~s----s~--vL~h-----~~-d~~-------~l~~~L~EI~RVLKPGG~fiI~~f-~~~~edL~~~~~~l~  443 (480)
                      .+++||.|++    +.  ++.+     |. ...       ....++.++.++|||||+++++.. ....+..+.+...++
T Consensus       310 ~~~~fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~Ene~~v~~~l~  389 (427)
T PRK10901        310 DGQPFDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSILPEENEQQIKAFLA  389 (427)
T ss_pred             ccCCCCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChhhCHHHHHHHHH
Confidence            4678999994    22  1111     11 111       113689999999999999998753 222333344445555


Q ss_pred             Hc-CceeeE--------EEEeeccCCCCcceeEEEEEEe
Q 046488          444 ML-KYKKHK--------WVVVPKRDKDDREVFFSAVLEK  473 (480)
Q Consensus       444 ~l-Gfkkl~--------W~~~~k~d~~~~E~~lsav~qK  473 (480)
                      +. +|+.+.        +.+.+..  ...+.|+.|.++|
T Consensus       390 ~~~~~~~~~~~~~~~~~~~~~P~~--~~~dGff~a~l~k  426 (427)
T PRK10901        390 RHPDAELLDTGTPQQPGRQLLPGE--EDGDGFFYALLIK  426 (427)
T ss_pred             hCCCCEEecCCCCCCCceEECCCC--CCCCCeEEEEEEE
Confidence            43 343222        2232221  2356788888887

>PLN02232 ubiquinone biosynthesis methyltransferase

Probab=98.70  E-value=4.1e-08  Score=90.60  Aligned_cols=57  Identities=23%  Similarity=0.180  Sum_probs=49.7

Q ss_pred             CCeeeecccCCCCCCCccchheecccccCccChhcHHHHHHHHHhcccCCcEEEEeeccC
Q 046488          371 VPLYITINQRVPFFDNTLDLIHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDSFFC  430 (480)
Q Consensus       371 ip~~~~~ae~LPFpd~SFDlV~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~f~~  430 (480)
                      +.+..++++.+|+++++||+|++.++++++.++   ..+++|++|+|||||.|++.+|..
T Consensus        28 i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~d~---~~~l~ei~rvLkpGG~l~i~d~~~   84 (160)
T PLN02232         28 IEWIEGDAIDLPFDDCEFDAVTMGYGLRNVVDR---LRAMKEMYRVLKPGSRVSILDFNK   84 (160)
T ss_pred             eEEEEechhhCCCCCCCeeEEEecchhhcCCCH---HHHHHHHHHHcCcCeEEEEEECCC
Confidence            456678899999999999999999999988776   469999999999999999886543

>PRK14967 putative methyltransferase; Provisional

Probab=98.69  E-value=2e-07  Score=89.97  Aligned_cols=117  Identities=17%  Similarity=0.096  Sum_probs=70.1

Q ss_pred             CeEEEECCCCcHHHHHHhhCCC-EEEEEecCCChhHHH----HHHHhCC-CCeeeecccCCCCCCCccchheecccccCc
Q 046488          327 RIGLDFSIGTGTFAARMREFNV-TLVSAIINLGAPFNE----MIALRGL-VPLYITINQRVPFFDNTLDLIHTTRFLDGW  400 (480)
Q Consensus       327 R~VLDVGCGtG~fAa~Lae~gV-~Vv~vd~d~~~~~~~----~iA~rgl-ip~~~~~ae~LPFpd~SFDlV~ss~vL~h~  400 (480)
                      .+|||+|||+|.++..++..+. .+++++.+.  .+..    .+...+. +.++.++... .+++++||+|+++--..+-
T Consensus        38 ~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~--~~l~~a~~n~~~~~~~~~~~~~d~~~-~~~~~~fD~Vi~npPy~~~  114 (223)
T PRK14967         38 RRVLDLCTGSGALAVAAAAAGAGSVTAVDISR--RAVRSARLNALLAGVDVDVRRGDWAR-AVEFRPFDVVVSNPPYVPA  114 (223)
T ss_pred             CeEEEecCCHHHHHHHHHHcCCCeEEEEECCH--HHHHHHHHHHHHhCCeeEEEECchhh-hccCCCeeEEEECCCCCCC
Confidence            4899999999999999988765 777877653  2222    2222222 2223333322 3467899999986322211


Q ss_pred             cC------------------hhcHHHHHHHHHhcccCCcEEEEeeccCChhhHHHHHHHHHHcCce
Q 046488          401 ID------------------FVLLDFILYDWDRVLRPGGLLWIDSFFCAKEDMNDYLEVFKMLKYK  448 (480)
Q Consensus       401 ~d------------------~~~l~~~L~EI~RVLKPGG~fiI~~f~~~~edL~~~~~~l~~lGfk  448 (480)
                      ..                  ...+..++.++.++|||||.+++..-..  .+...+...++..||.
T Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~--~~~~~~~~~l~~~g~~  178 (223)
T PRK14967        115 PPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSEL--SGVERTLTRLSEAGLD  178 (223)
T ss_pred             CcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEecc--cCHHHHHHHHHHCCCC
Confidence            00                  0113567889999999999998742111  1233445556666654

>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A

Probab=98.68  E-value=4.1e-08  Score=83.92  Aligned_cols=96  Identities=27%  Similarity=0.271  Sum_probs=66.0

Q ss_pred             eEEEECCCCcHHHHHHhhCC-CEEEEEecCCChhHHHHHHHh-----CC---CCeeeecccCCC--CCCCccchheeccc
Q 046488          328 IGLDFSIGTGTFAARMREFN-VTLVSAIINLGAPFNEMIALR-----GL---VPLYITINQRVP--FFDNTLDLIHTTRF  396 (480)
Q Consensus       328 ~VLDVGCGtG~fAa~Lae~g-V~Vv~vd~d~~~~~~~~iA~r-----gl---ip~~~~~ae~LP--Fpd~SFDlV~ss~v  396 (480)
                      +|||+|||+|.++..+++.+ ..+++++++.   ....++++     +.   +.++.++...++  +++++||+|+++--
T Consensus         3 ~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~---~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP   79 (117)
T PF13659_consen    3 RVLDPGCGSGTFLLAALRRGAARVTGVDIDP---EAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPP   79 (117)
T ss_dssp             EEEEETSTTCHHHHHHHHHCTCEEEEEESSH---HHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--S
T ss_pred             EEEEcCcchHHHHHHHHHHCCCeEEEEEECH---HHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCC
Confidence            79999999999999999887 8888988773   33333322     21   345556655544  78999999999754


Q ss_pred             ccCccC-----hhcHHHHHHHHHhcccCCcEEEEe
Q 046488          397 LDGWID-----FVLLDFILYDWDRVLRPGGLLWID  426 (480)
Q Consensus       397 L~h~~d-----~~~l~~~L~EI~RVLKPGG~fiI~  426 (480)
                      +.....     ......++.++.|+|||||.+++.
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~  114 (117)
T PF13659_consen   80 YGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFI  114 (117)
T ss_dssp             TTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             CccccccchhhHHHHHHHHHHHHHHcCCCeEEEEE
Confidence            443211     112356899999999999998874

...

>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional

Probab=98.68  E-value=9.8e-08  Score=100.24  Aligned_cols=112  Identities=12%  Similarity=0.039  Sum_probs=70.2

Q ss_pred             chhhhhHHHhcCCCCCCCCeEEEECCCCcHHHHHHhhC--CCEEEEEecCCChhHHHHHHH-----hCC-----CCeeee
Q 046488          309 LTADFLIPEVLDIKPGEIRIGLDFSIGTGTFAARMREF--NVTLVSAIINLGAPFNEMIAL-----RGL-----VPLYIT  376 (480)
Q Consensus       309 ~~ad~~I~~vL~l~~g~iR~VLDVGCGtG~fAa~Lae~--gV~Vv~vd~d~~~~~~~~iA~-----rgl-----ip~~~~  376 (480)
                      .|+.+++.. |+...+  .+|||+|||+|.++..++++  +..++.+|.+.   .....++     .+.     +.++.+
T Consensus       215 ~GtrllL~~-lp~~~~--~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~---~Av~~A~~N~~~n~~~~~~~v~~~~~  288 (378)
T PRK15001        215 IGARFFMQH-LPENLE--GEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESP---MAVASSRLNVETNMPEALDRCEFMIN  288 (378)
T ss_pred             hHHHHHHHh-CCcccC--CeEEEEeccccHHHHHHHHhCCCCEEEEEECCH---HHHHHHHHHHHHcCcccCceEEEEEc
Confidence            356655543 332222  37999999999999999887  46788887662   2222222     111     122333


Q ss_pred             cccCCCCCCCccchheecccccCc--cChhcHHHHHHHHHhcccCCcEEEEee
Q 046488          377 INQRVPFFDNTLDLIHTTRFLDGW--IDFVLLDFILYDWDRVLRPGGLLWIDS  427 (480)
Q Consensus       377 ~ae~LPFpd~SFDlV~ss~vL~h~--~d~~~l~~~L~EI~RVLKPGG~fiI~~  427 (480)
                      ++.. .+++.+||+|+|+--++..  ........++.++.|+|||||.|++..
T Consensus       289 D~l~-~~~~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~  340 (378)
T PRK15001        289 NALS-GVEPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVA  340 (378)
T ss_pred             cccc-cCCCCCEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEE
Confidence            3211 1345689999997555422  122223678999999999999999874

>PLN03075 nicotianamine synthase; Provisional

Probab=98.67  E-value=1.4e-07  Score=96.23  Aligned_cols=100  Identities=12%  Similarity=-0.007  Sum_probs=64.7

Q ss_pred             CCeEEEECCCCcHHHHH-Hh-hC--CCEEEEEecCCChhH-HHHHH-H-hC---CCCeeeecccCCCCCCCccchheecc
Q 046488          326 IRIGLDFSIGTGTFAAR-MR-EF--NVTLVSAIINLGAPF-NEMIA-L-RG---LVPLYITINQRVPFFDNTLDLIHTTR  395 (480)
Q Consensus       326 iR~VLDVGCGtG~fAa~-La-e~--gV~Vv~vd~d~~~~~-~~~iA-~-rg---lip~~~~~ae~LPFpd~SFDlV~ss~  395 (480)
                      .++|+|||||.|.+++. ++ .+  +..++++|.+..+.. ..+.+ . .+   .+.+..+++..++-..+.||+|++. 
T Consensus       124 p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF~~-  202 (296)
T PLN03075        124 PTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVFLA-  202 (296)
T ss_pred             CCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEEEe-
Confidence            46899999998865443 33 22  456778887632211 11222 1 12   2445555544443235789999998 


Q ss_pred             cccCccChhcHHHHHHHHHhcccCCcEEEEee
Q 046488          396 FLDGWIDFVLLDFILYDWDRVLRPGGLLWIDS  427 (480)
Q Consensus       396 vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~  427 (480)
                      ++++|..... ..++..+.|+|||||++++..
T Consensus       203 ALi~~dk~~k-~~vL~~l~~~LkPGG~Lvlr~  233 (296)
T PLN03075        203 ALVGMDKEEK-VKVIEHLGKHMAPGALLMLRS  233 (296)
T ss_pred             cccccccccH-HHHHHHHHHhcCCCcEEEEec
Confidence            8988853222 679999999999999998864

>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional

Probab=98.66  E-value=6.1e-08  Score=102.07  Aligned_cols=99  Identities=19%  Similarity=0.185  Sum_probs=68.0

Q ss_pred             CeEEEECCCCcHHHHHHhhC--CCEEEEEecCC--ChhHHHHHHHhCCCC--eeeecccCC--CCCCCccchheeccccc
Q 046488          327 RIGLDFSIGTGTFAARMREF--NVTLVSAIINL--GAPFNEMIALRGLVP--LYITINQRV--PFFDNTLDLIHTTRFLD  398 (480)
Q Consensus       327 R~VLDVGCGtG~fAa~Lae~--gV~Vv~vd~d~--~~~~~~~iA~rglip--~~~~~ae~L--PFpd~SFDlV~ss~vL~  398 (480)
                      ..+||||||+|.++..++.+  +..+++++++.  ...+..++...+.-+  ++.+++..+  ++++++||.|++.+. .
T Consensus       124 p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~s~D~I~lnFP-d  202 (390)
T PRK14121        124 KILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPSNSVEKIFVHFP-V  202 (390)
T ss_pred             CeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCCCceeEEEEeCC-C
Confidence            48999999999999999987  46778887652  112223334444323  344555443  578999999998654 3


Q ss_pred             CccChh----cHHHHHHHHHhcccCCcEEEEe
Q 046488          399 GWIDFV----LLDFILYDWDRVLRPGGLLWID  426 (480)
Q Consensus       399 h~~d~~----~l~~~L~EI~RVLKPGG~fiI~  426 (480)
                      +|....    ....++.++.|+|||||.+.+.
T Consensus       203 PW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~  234 (390)
T PRK14121        203 PWDKKPHRRVISEDFLNEALRVLKPGGTLELR  234 (390)
T ss_pred             CccccchhhccHHHHHHHHHHHcCCCcEEEEE
Confidence            554221    1146899999999999999884

>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

Probab=98.66  E-value=1.1e-07  Score=75.58  Aligned_cols=97  Identities=25%  Similarity=0.254  Sum_probs=64.1

Q ss_pred             eEEEECCCCcHHHHHHhh-CCCEEEEEecCCChhHHHH-HHHhCC---CCeeeecccCCC-CCCCccchheecccccCcc
Q 046488          328 IGLDFSIGTGTFAARMRE-FNVTLVSAIINLGAPFNEM-IALRGL---VPLYITINQRVP-FFDNTLDLIHTTRFLDGWI  401 (480)
Q Consensus       328 ~VLDVGCGtG~fAa~Lae-~gV~Vv~vd~d~~~~~~~~-iA~rgl---ip~~~~~ae~LP-Fpd~SFDlV~ss~vL~h~~  401 (480)
                      ++||+|||+|.++..+++ .+..+++++++.......+ ......   +..+.......+ ...+.||+|++..+++++.
T Consensus         1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~~   80 (107)
T cd02440           1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLHHLV   80 (107)
T ss_pred             CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccceeehh
Confidence            489999999999999987 4667777776532111111 111111   223334433333 3578899999998887632


Q ss_pred             ChhcHHHHHHHHHhcccCCcEEEEe
Q 046488          402 DFVLLDFILYDWDRVLRPGGLLWID  426 (480)
Q Consensus       402 d~~~l~~~L~EI~RVLKPGG~fiI~  426 (480)
                      .  ....++..+.+.|||||++++.
T Consensus        81 ~--~~~~~l~~~~~~l~~~g~~~~~  103 (107)
T cd02440          81 E--DLARFLEEARRLLKPGGVLVLT  103 (107)
T ss_pred             h--HHHHHHHHHHHHcCCCCEEEEE
Confidence            2  2267999999999999999875

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).

>PRK14901 16S rRNA methyltransferase B; Provisional

Probab=98.66  E-value=3.7e-07  Score=97.05  Aligned_cols=159  Identities=21%  Similarity=0.239  Sum_probs=93.5

Q ss_pred             hhhHHHhcCCCCCCCCeEEEECCCCcHHHHHHhhC---CCEEEEEecCCC--hhHHHHHHHhCC--CCeeeecccCCC--
Q 046488          312 DFLIPEVLDIKPGEIRIGLDFSIGTGTFAARMREF---NVTLVSAIINLG--APFNEMIALRGL--VPLYITINQRVP--  382 (480)
Q Consensus       312 d~~I~~vL~l~~g~iR~VLDVGCGtG~fAa~Lae~---gV~Vv~vd~d~~--~~~~~~iA~rgl--ip~~~~~ae~LP--  382 (480)
                      ..++...++..+|.  +|||+|||+|..+..+++.   ...+++++.+..  ..+...+...|.  +.+..+++..++  
T Consensus       241 s~l~~~~l~~~~g~--~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~  318 (434)
T PRK14901        241 AQLVAPLLDPQPGE--VILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLEL  318 (434)
T ss_pred             HHHHHHHhCCCCcC--EEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhcccc
Confidence            33455566666664  8999999999999988875   246777766421  112222333332  223344555555  


Q ss_pred             --CCCCccchheec------ccccCccC------hhc-------HHHHHHHHHhcccCCcEEEEeeccCCh-hhHHHHHH
Q 046488          383 --FFDNTLDLIHTT------RFLDGWID------FVL-------LDFILYDWDRVLRPGGLLWIDSFFCAK-EDMNDYLE  440 (480)
Q Consensus       383 --Fpd~SFDlV~ss------~vL~h~~d------~~~-------l~~~L~EI~RVLKPGG~fiI~~f~~~~-edL~~~~~  440 (480)
                        +.+++||.|++.      .++.+.++      +..       ...+|.++.++|||||+++.+...-.. +....+..
T Consensus       319 ~~~~~~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi~~~Ene~~v~~  398 (434)
T PRK14901        319 KPQWRGYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTLHPAENEAQIEQ  398 (434)
T ss_pred             cccccccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHH
Confidence              567899999952      23333222      000       146899999999999999887533323 33444556


Q ss_pred             HHHHc-CceeeEEE--EeeccCCCCcceeEEEEEEeC
Q 046488          441 VFKML-KYKKHKWV--VVPKRDKDDREVFFSAVLEKP  474 (480)
Q Consensus       441 ~l~~l-Gfkkl~W~--~~~k~d~~~~E~~lsav~qKP  474 (480)
                      .+++. +|+.....  ..+..  ...+.|+.|.++|.
T Consensus       399 ~l~~~~~~~~~~~~~~~~P~~--~~~dGfF~a~l~k~  433 (434)
T PRK14901        399 FLARHPDWKLEPPKQKIWPHR--QDGDGFFMAVLRKK  433 (434)
T ss_pred             HHHhCCCcEecCCCCccCCCC--CCCCcEEEEEEEeC
Confidence            66664 34422110  11111  23588999999985

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=98.62  E-value=5.8e-08  Score=95.68  Aligned_cols=134  Identities=19%  Similarity=0.219  Sum_probs=90.8

Q ss_pred             HHHhcC-CCCCCCCeEEEECCCCcHHHHHHhhCCCEEEEEecCCChhHHHHHHHhCCCC-eeeecccCC-C-CCCCccch
Q 046488          315 IPEVLD-IKPGEIRIGLDFSIGTGTFAARMREFNVTLVSAIINLGAPFNEMIALRGLVP-LYITINQRV-P-FFDNTLDL  390 (480)
Q Consensus       315 I~~vL~-l~~g~iR~VLDVGCGtG~fAa~Lae~gV~Vv~vd~d~~~~~~~~iA~rglip-~~~~~ae~L-P-Fpd~SFDl  390 (480)
                      +.+++. ...|..+++||+|||||.++..|..+--...+++++  ..|..+...+++.. .+++.+..+ + ..++.||+
T Consensus       114 l~emI~~~~~g~F~~~lDLGCGTGL~G~~lR~~a~~ltGvDiS--~nMl~kA~eKg~YD~L~~Aea~~Fl~~~~~er~DL  191 (287)
T COG4976         114 LAEMIGKADLGPFRRMLDLGCGTGLTGEALRDMADRLTGVDIS--ENMLAKAHEKGLYDTLYVAEAVLFLEDLTQERFDL  191 (287)
T ss_pred             HHHHHHhccCCccceeeecccCcCcccHhHHHHHhhccCCchh--HHHHHHHHhccchHHHHHHHHHHHhhhccCCcccc
Confidence            334443 445668999999999999999998874445555543  35666666666543 233333322 2 45788999


Q ss_pred             heecccccCccChhcHHHHHHHHHhcccCCcEEEEee-----c--cCChhhH-----HH-HHHHHHHcCceeeEEE
Q 046488          391 IHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDS-----F--FCAKEDM-----ND-YLEVFKMLKYKKHKWV  453 (480)
Q Consensus       391 V~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~-----f--~~~~edL-----~~-~~~~l~~lGfkkl~W~  453 (480)
                      |.+..+|..+..-   +.++.-+.+.|.|||.|.++.     +  |.-.+..     +. +..+++..|+..+.-.
T Consensus       192 i~AaDVl~YlG~L---e~~~~~aa~~L~~gGlfaFSvE~l~~~~~f~l~ps~RyAH~~~YVr~~l~~~Gl~~i~~~  264 (287)
T COG4976         192 IVAADVLPYLGAL---EGLFAGAAGLLAPGGLFAFSVETLPDDGGFVLGPSQRYAHSESYVRALLAASGLEVIAIE  264 (287)
T ss_pred             hhhhhHHHhhcch---hhHHHHHHHhcCCCceEEEEecccCCCCCeecchhhhhccchHHHHHHHHhcCceEEEee
Confidence            9999999877654   569999999999999999972     1  1111111     22 3478888899877543

>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB

Probab=98.62  E-value=7e-07  Score=94.61  Aligned_cols=157  Identities=17%  Similarity=0.141  Sum_probs=88.9

Q ss_pred             hhhhHHHhcCCCCCCCCeEEEECCCCcHHHHHHhhC--CCEEEEEecCCCh--hHHHHHHHhCCCCeee----ecccCCC
Q 046488          311 ADFLIPEVLDIKPGEIRIGLDFSIGTGTFAARMREF--NVTLVSAIINLGA--PFNEMIALRGLVPLYI----TINQRVP  382 (480)
Q Consensus       311 ad~~I~~vL~l~~g~iR~VLDVGCGtG~fAa~Lae~--gV~Vv~vd~d~~~--~~~~~iA~rglip~~~----~~ae~LP  382 (480)
                      +..++...|+..++.  +|||+|||+|..+..+++.  +..+++++.+...  .+...+...| +...+    ++...++
T Consensus       226 ~s~~~~~~L~~~~g~--~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g-~~~~v~~~~~d~~~~~  302 (426)
T TIGR00563       226 SAQWVATWLAPQNEE--TILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLG-LTIKAETKDGDGRGPS  302 (426)
T ss_pred             HHHHHHHHhCCCCCC--eEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcC-CCeEEEEecccccccc
Confidence            344555677766664  8999999999999988875  3567777765311  1122222223 33211    2233334


Q ss_pred             C--CCCccchheec------ccccCccC------hh-------cHHHHHHHHHhcccCCcEEEEeeccCCh-hhHHHHHH
Q 046488          383 F--FDNTLDLIHTT------RFLDGWID------FV-------LLDFILYDWDRVLRPGGLLWIDSFFCAK-EDMNDYLE  440 (480)
Q Consensus       383 F--pd~SFDlV~ss------~vL~h~~d------~~-------~l~~~L~EI~RVLKPGG~fiI~~f~~~~-edL~~~~~  440 (480)
                      +  ++++||.|++.      .++.+.++      +.       ....+|.++.|+|||||+++++...-.. +.-..+..
T Consensus       303 ~~~~~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~~~Ene~~v~~  382 (426)
T TIGR00563       303 QWAENEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVLPEENSEQIKA  382 (426)
T ss_pred             ccccccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhCHHHHHH
Confidence            3  57889999852      33433222      00       0146899999999999999988533222 22233334


Q ss_pred             HHHHc-CceeeEE------------EEeeccCCCCcceeEEEEEEe
Q 046488          441 VFKML-KYKKHKW------------VVVPKRDKDDREVFFSAVLEK  473 (480)
Q Consensus       441 ~l~~l-Gfkkl~W------------~~~~k~d~~~~E~~lsav~qK  473 (480)
                      ++++. +|. +.|            ...+..  ...+.|+.|.++|
T Consensus       383 ~l~~~~~~~-~~~~~~~~~~~~~~~~~~P~~--~~~dGff~a~l~k  425 (426)
T TIGR00563       383 FLQEHPDFP-FEKTGTPEQVRDGGLQILPHA--EEGDGFFYAKLIK  425 (426)
T ss_pred             HHHhCCCCe-eccCCCccccCCCcEEECCCC--CCCCCeEEEEEEe
Confidence            44443 232 122            111111  2357888999887

The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.

>COG4123 Predicted O-methyltransferase [General function prediction only]

Probab=98.61  E-value=6.9e-07  Score=89.06  Aligned_cols=140  Identities=15%  Similarity=0.152  Sum_probs=87.0

Q ss_pred             CCCchhhhhHH-HhcCCCCCCCCeEEEECCCCcHHHHHHhhC--CCEEEEEecCCChhHHHHHHHh-----C---CCCee
Q 046488          306 ITNLTADFLIP-EVLDIKPGEIRIGLDFSIGTGTFAARMREF--NVTLVSAIINLGAPFNEMIALR-----G---LVPLY  374 (480)
Q Consensus       306 ~~~~~ad~~I~-~vL~l~~g~iR~VLDVGCGtG~fAa~Lae~--gV~Vv~vd~d~~~~~~~~iA~r-----g---lip~~  374 (480)
                      +++.+.|..+- ...... . ..+|||+|||+|..+..++++  .+.++++.++.   .....|.+     +   .+.++
T Consensus        26 ~~~~~~DaiLL~~~~~~~-~-~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~---~~a~~A~~nv~ln~l~~ri~v~  100 (248)
T COG4123          26 GFRYGTDAILLAAFAPVP-K-KGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQE---EAAEMAQRNVALNPLEERIQVI  100 (248)
T ss_pred             ccccccHHHHHHhhcccc-c-CCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCH---HHHHHHHHHHHhCcchhceeEe
Confidence            35555665332 222222 2 568999999999999999987  37788887652   22223322     2   23445


Q ss_pred             eecccCC--CCCCCccchheecc---------------cccCccChhcHHHHHHHHHhcccCCcEEEEeeccCChhhHHH
Q 046488          375 ITINQRV--PFFDNTLDLIHTTR---------------FLDGWIDFVLLDFILYDWDRVLRPGGLLWIDSFFCAKEDMND  437 (480)
Q Consensus       375 ~~~ae~L--PFpd~SFDlV~ss~---------------vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~f~~~~edL~~  437 (480)
                      .++...+  +..-.+||+|+|+=               .+.++.....++.+++-..++|||||++.+.+   ..+.+.+
T Consensus       101 ~~Di~~~~~~~~~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~---r~erl~e  177 (248)
T COG4123         101 EADIKEFLKALVFASFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVH---RPERLAE  177 (248)
T ss_pred             hhhHHHhhhcccccccCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEe---cHHHHHH
Confidence            5553322  22334899999961               11122223345778999999999999998753   3455677


Q ss_pred             HHHHHHHcCceeeEEE
Q 046488          438 YLEVFKMLKYKKHKWV  453 (480)
Q Consensus       438 ~~~~l~~lGfkkl~W~  453 (480)
                      +.+.+++.+|...+..
T Consensus       178 i~~~l~~~~~~~k~i~  193 (248)
T COG4123         178 IIELLKSYNLEPKRIQ  193 (248)
T ss_pred             HHHHHHhcCCCceEEE
Confidence            7888888777654433

>PRK07402 precorrin-6B methylase; Provisional

Probab=98.61  E-value=5.7e-07  Score=84.98  Aligned_cols=122  Identities=17%  Similarity=0.138  Sum_probs=69.9

Q ss_pred             hHHHhcCCCCCCCCeEEEECCCCcHHHHHHhhC--CCEEEEEecCCCh--hHHHHHHHhCC--CCeeeeccc-CCCCCCC
Q 046488          314 LIPEVLDIKPGEIRIGLDFSIGTGTFAARMREF--NVTLVSAIINLGA--PFNEMIALRGL--VPLYITINQ-RVPFFDN  386 (480)
Q Consensus       314 ~I~~vL~l~~g~iR~VLDVGCGtG~fAa~Lae~--gV~Vv~vd~d~~~--~~~~~iA~rgl--ip~~~~~ae-~LPFpd~  386 (480)
                      .+-..+.+.++.  +|||+|||+|.++..++..  +..+++++++...  .+...+...+.  +.+..+++. .++....
T Consensus        31 ~l~~~l~~~~~~--~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~  108 (196)
T PRK07402         31 LLISQLRLEPDS--VLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLAQLAP  108 (196)
T ss_pred             HHHHhcCCCCCC--EEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHhhCCC
Confidence            334455555553  8999999999999988754  4678888765211  11122222232  223334332 2333233


Q ss_pred             ccchheecccccCccChhcHHHHHHHHHhcccCCcEEEEeeccCChhhHHHHHHHHHHcC
Q 046488          387 TLDLIHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDSFFCAKEDMNDYLEVFKMLK  446 (480)
Q Consensus       387 SFDlV~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~f~~~~edL~~~~~~l~~lG  446 (480)
                      .+|.++...     ..  .+..++.++.|+|||||++++....  .+++....+.++.++
T Consensus       109 ~~d~v~~~~-----~~--~~~~~l~~~~~~LkpgG~li~~~~~--~~~~~~~~~~~~~~~  159 (196)
T PRK07402        109 APDRVCIEG-----GR--PIKEILQAVWQYLKPGGRLVATASS--LEGLYAISEGLAQLQ  159 (196)
T ss_pred             CCCEEEEEC-----Cc--CHHHHHHHHHHhcCCCeEEEEEeec--HHHHHHHHHHHHhcC
Confidence            456655321     11  2356899999999999999886532  333334445555543

>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=98.60  E-value=4.8e-07  Score=88.89  Aligned_cols=119  Identities=18%  Similarity=0.191  Sum_probs=73.0

Q ss_pred             CeEEEECCCCcHHHHHHhhC--CCEEEEEecCCChhHHHHHHHh----CC---CCeeeecccCCCCCCCccchheecccc
Q 046488          327 RIGLDFSIGTGTFAARMREF--NVTLVSAIINLGAPFNEMIALR----GL---VPLYITINQRVPFFDNTLDLIHTTRFL  397 (480)
Q Consensus       327 R~VLDVGCGtG~fAa~Lae~--gV~Vv~vd~d~~~~~~~~iA~r----gl---ip~~~~~ae~LPFpd~SFDlV~ss~vL  397 (480)
                      .+|||+|||+|.++..++..  ...+++++++.  .+.. .+.+    +.   +.+..++.. -++++++||+|+++--.
T Consensus       110 ~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~--~~l~-~a~~n~~~~~~~~i~~~~~d~~-~~~~~~~fD~Iv~npPy  185 (275)
T PRK09328        110 LRVLDLGTGSGAIALALAKERPDAEVTAVDISP--EALA-VARRNAKHGLGARVEFLQGDWF-EPLPGGRFDLIVSNPPY  185 (275)
T ss_pred             CEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCH--HHHH-HHHHHHHhCCCCcEEEEEcccc-CcCCCCceeEEEECCCc
Confidence            47999999999999999876  36778887653  2222 2211    11   223333321 13346899999984211


Q ss_pred             cC------ccC-----------------hhcHHHHHHHHHhcccCCcEEEEeeccCChhhHHHHHHHHHHcCceeeEE
Q 046488          398 DG------WID-----------------FVLLDFILYDWDRVLRPGGLLWIDSFFCAKEDMNDYLEVFKMLKYKKHKW  452 (480)
Q Consensus       398 ~h------~~d-----------------~~~l~~~L~EI~RVLKPGG~fiI~~f~~~~edL~~~~~~l~~lGfkkl~W  452 (480)
                      ..      ..+                 ......++.++.++|||||++++..-.   ...+.+..+++..||..+.+
T Consensus       186 ~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~g~---~~~~~~~~~l~~~gf~~v~~  260 (275)
T PRK09328        186 IPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEIGY---DQGEAVRALLAAAGFADVET  260 (275)
T ss_pred             CCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEECc---hHHHHHHHHHHhCCCceeEE
Confidence            10      000                 011245788899999999999885321   22244667788889986655

>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed

Probab=98.59  E-value=2.7e-07  Score=88.07  Aligned_cols=98  Identities=22%  Similarity=0.156  Sum_probs=62.3

Q ss_pred             HhcCCCCCCCCeEEEECCCCcHHHHHHhhCCCEEEEEecCCChhHHH----HHHHhCC--CCeeeecccCCCCCCCccch
Q 046488          317 EVLDIKPGEIRIGLDFSIGTGTFAARMREFNVTLVSAIINLGAPFNE----MIALRGL--VPLYITINQRVPFFDNTLDL  390 (480)
Q Consensus       317 ~vL~l~~g~iR~VLDVGCGtG~fAa~Lae~gV~Vv~vd~d~~~~~~~----~iA~rgl--ip~~~~~ae~LPFpd~SFDl  390 (480)
                      +.+++.++  .+|||+|||+|.++..|++....+++++.+.  .+..    .++..+.  +.+..++........+.||+
T Consensus        72 ~~l~~~~~--~~VLeiG~GsG~~t~~la~~~~~v~~vd~~~--~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~  147 (212)
T PRK00312         72 ELLELKPG--DRVLEIGTGSGYQAAVLAHLVRRVFSVERIK--TLQWEAKRRLKQLGLHNVSVRHGDGWKGWPAYAPFDR  147 (212)
T ss_pred             HhcCCCCC--CEEEEECCCccHHHHHHHHHhCEEEEEeCCH--HHHHHHHHHHHHCCCCceEEEECCcccCCCcCCCcCE
Confidence            45555555  3899999999999998887755677777652  2222    2222232  23333443221113478999


Q ss_pred             heecccccCccChhcHHHHHHHHHhcccCCcEEEEee
Q 046488          391 IHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDS  427 (480)
Q Consensus       391 V~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~  427 (480)
                      |++...+.+         +..++.+.|+|||.+++..
T Consensus       148 I~~~~~~~~---------~~~~l~~~L~~gG~lv~~~  175 (212)
T PRK00312        148 ILVTAAAPE---------IPRALLEQLKEGGILVAPV  175 (212)
T ss_pred             EEEccCchh---------hhHHHHHhcCCCcEEEEEE
Confidence            998765433         3456789999999988853

>PLN02585 magnesium protoporphyrin IX methyltransferase

Probab=98.59  E-value=4.3e-07  Score=93.31  Aligned_cols=116  Identities=15%  Similarity=0.062  Sum_probs=72.8

Q ss_pred             CeEEEECCCCcHHHHHHhhCCCEEEEEecCCChhHHHHHHHhCC------------CCeeeecccCCCCCCCccchheec
Q 046488          327 RIGLDFSIGTGTFAARMREFNVTLVSAIINLGAPFNEMIALRGL------------VPLYITINQRVPFFDNTLDLIHTT  394 (480)
Q Consensus       327 R~VLDVGCGtG~fAa~Lae~gV~Vv~vd~d~~~~~~~~iA~rgl------------ip~~~~~ae~LPFpd~SFDlV~ss  394 (480)
                      .+|||+|||+|.++..++++|..++++|++.  .+.. .++++.            +.+...   .++..+++||+|+|.
T Consensus       146 ~~VLDlGcGtG~~a~~la~~g~~V~gvD~S~--~ml~-~A~~~~~~~~~~~~~~~~~~f~~~---Dl~~l~~~fD~Vv~~  219 (315)
T PLN02585        146 VTVCDAGCGTGSLAIPLALEGAIVSASDISA--AMVA-EAERRAKEALAALPPEVLPKFEAN---DLESLSGKYDTVTCL  219 (315)
T ss_pred             CEEEEecCCCCHHHHHHHHCCCEEEEEECCH--HHHH-HHHHHHHhcccccccccceEEEEc---chhhcCCCcCEEEEc
Confidence            4899999999999999999998898888763  3332 221110            111122   233347899999999


Q ss_pred             ccccCccChhcHHHHHHHHHhcccCCcEEEEee---c-----------cCChh--------hHHHHHHHHHHcCceee
Q 046488          395 RFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDS---F-----------FCAKE--------DMNDYLEVFKMLKYKKH  450 (480)
Q Consensus       395 ~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~---f-----------~~~~e--------dL~~~~~~l~~lGfkkl  450 (480)
                      .+++|+++.. ...++..+.+ +.+||.++...   +           +....        ..+++.++++..||+..
T Consensus       220 ~vL~H~p~~~-~~~ll~~l~~-l~~g~liIs~~p~~~~~~~l~~~g~~~~g~~~~~r~y~~s~eel~~lL~~AGf~v~  295 (315)
T PLN02585        220 DVLIHYPQDK-ADGMIAHLAS-LAEKRLIISFAPKTLYYDILKRIGELFPGPSKATRAYLHAEADVERALKKAGWKVA  295 (315)
T ss_pred             CEEEecCHHH-HHHHHHHHHh-hcCCEEEEEeCCcchHHHHHHHHHhhcCCCCcCceeeeCCHHHHHHHHHHCCCEEE
Confidence            9999887643 2445666665 45666644321   0           00000        13457788888898854

>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes

Probab=98.56  E-value=6.6e-07  Score=86.86  Aligned_cols=99  Identities=24%  Similarity=0.356  Sum_probs=65.4

Q ss_pred             eEEEECCCCcHHHHHHhhC--CCEEEEEecCCCh-hHHH-HHHHhCC----CCeeeecccC-CCC------CCCccchhe
Q 046488          328 IGLDFSIGTGTFAARMREF--NVTLVSAIINLGA-PFNE-MIALRGL----VPLYITINQR-VPF------FDNTLDLIH  392 (480)
Q Consensus       328 ~VLDVGCGtG~fAa~Lae~--gV~Vv~vd~d~~~-~~~~-~iA~rgl----ip~~~~~ae~-LPF------pd~SFDlV~  392 (480)
                      +||+||+|||.-+.+++.+  .++.--.+++... .... -++..+.    .|..++.... .|.      ..++||+|+
T Consensus        28 ~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D~i~  107 (204)
T PF06080_consen   28 RVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESFDAIF  107 (204)
T ss_pred             eEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCCcceee
Confidence            6999999999999999886  4444344443322 1111 1233332    2344444332 333      477999999


Q ss_pred             ecccccCccChhcHHHHHHHHHhcccCCcEEEEee
Q 046488          393 TTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDS  427 (480)
Q Consensus       393 ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~  427 (480)
                      |..++| +......+.+|.++.++|+|||.|++-+
T Consensus       108 ~~N~lH-I~p~~~~~~lf~~a~~~L~~gG~L~~YG  141 (204)
T PF06080_consen  108 CINMLH-ISPWSAVEGLFAGAARLLKPGGLLFLYG  141 (204)
T ss_pred             ehhHHH-hcCHHHHHHHHHHHHHhCCCCCEEEEeC
Confidence            999875 4444444789999999999999999864

The function of this family is unknown.

>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase

Probab=98.56  E-value=7.1e-07  Score=88.87  Aligned_cols=114  Identities=18%  Similarity=0.207  Sum_probs=69.6

Q ss_pred             hhhHHHhcCCCCCCCCeEEEECCCCcHHHHHHhhC---CCEEEEEecCCCh--hHHHHHHHhCC--CCeeeecccCCCCC
Q 046488          312 DFLIPEVLDIKPGEIRIGLDFSIGTGTFAARMREF---NVTLVSAIINLGA--PFNEMIALRGL--VPLYITINQRVPFF  384 (480)
Q Consensus       312 d~~I~~vL~l~~g~iR~VLDVGCGtG~fAa~Lae~---gV~Vv~vd~d~~~--~~~~~iA~rgl--ip~~~~~ae~LPFp  384 (480)
                      ..+...+|+..++.  +|||+|||+|..+..+++.   .-.+++++.+...  .+...+.+.+.  +.+...++..++..
T Consensus        60 s~~~~~~l~~~~g~--~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~  137 (264)
T TIGR00446        60 SMIPPLALEPDPPE--RVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAA  137 (264)
T ss_pred             HHHHHHHhCCCCcC--EEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhh
Confidence            33444566766664  8999999999999888774   2367777765211  11223333332  22333445566666


Q ss_pred             CCccchheec------ccccC-------ccCh------hcHHHHHHHHHhcccCCcEEEEee
Q 046488          385 DNTLDLIHTT------RFLDG-------WIDF------VLLDFILYDWDRVLRPGGLLWIDS  427 (480)
Q Consensus       385 d~SFDlV~ss------~vL~h-------~~d~------~~l~~~L~EI~RVLKPGG~fiI~~  427 (480)
                      .+.||.|++.      .++.+       |.+.      .....+|.++.+.|||||+++.+.
T Consensus       138 ~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYst  199 (264)
T TIGR00446       138 VPKFDAILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYST  199 (264)
T ss_pred             ccCCCEEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence            6789999852      12211       1110      011358999999999999998874

>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.56  E-value=1.6e-07  Score=91.16  Aligned_cols=99  Identities=21%  Similarity=0.172  Sum_probs=69.7

Q ss_pred             CCCCeEEEECCCCcHHHHHHhhC--CCEEEEEecCCChhHHHHHHHhCCCCeeeecccCCCCCCCccchheecccccCcc
Q 046488          324 GEIRIGLDFSIGTGTFAARMREF--NVTLVSAIINLGAPFNEMIALRGLVPLYITINQRVPFFDNTLDLIHTTRFLDGWI  401 (480)
Q Consensus       324 g~iR~VLDVGCGtG~fAa~Lae~--gV~Vv~vd~d~~~~~~~~iA~rglip~~~~~ae~LPFpd~SFDlV~ss~vL~h~~  401 (480)
                      ...++|||||+|+|.++..++++  +..++..|+-   ...+.......+...-++.. -|+|.  +|+++..++||+|.
T Consensus        99 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp---~v~~~~~~~~rv~~~~gd~f-~~~P~--~D~~~l~~vLh~~~  172 (241)
T PF00891_consen   99 SGFKTVVDVGGGSGHFAIALARAYPNLRATVFDLP---EVIEQAKEADRVEFVPGDFF-DPLPV--ADVYLLRHVLHDWS  172 (241)
T ss_dssp             TTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE-H---HHHCCHHHTTTEEEEES-TT-TCCSS--ESEEEEESSGGGS-
T ss_pred             cCccEEEeccCcchHHHHHHHHHCCCCcceeeccH---hhhhccccccccccccccHH-hhhcc--ccceeeehhhhhcc
Confidence            34578999999999999999886  6676666541   22222222334555555533 44545  99999999999998


Q ss_pred             ChhcHHHHHHHHHhcccCC--cEEEEeecc
Q 046488          402 DFVLLDFILYDWDRVLRPG--GLLWIDSFF  429 (480)
Q Consensus       402 d~~~l~~~L~EI~RVLKPG--G~fiI~~f~  429 (480)
                      +... ..+|+.+++.|+||  |+++|.++.
T Consensus       173 d~~~-~~iL~~~~~al~pg~~g~llI~e~~  201 (241)
T PF00891_consen  173 DEDC-VKILRNAAAALKPGKDGRLLIIEMV  201 (241)
T ss_dssp             HHHH-HHHHHHHHHHSEECTTEEEEEEEEE
T ss_pred             hHHH-HHHHHHHHHHhCCCCCCeEEEEeec
Confidence            7654 77999999999999  999998654

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....

>PRK14902 16S rRNA methyltransferase B; Provisional

Probab=98.53  E-value=1.1e-06  Score=93.56  Aligned_cols=158  Identities=20%  Similarity=0.193  Sum_probs=87.9

Q ss_pred             hhhHHHhcCCCCCCCCeEEEECCCCcHHHHHHhhC---CCEEEEEecCCCh--hHHHHHHHhCC--CCeeeecccCCC--
Q 046488          312 DFLIPEVLDIKPGEIRIGLDFSIGTGTFAARMREF---NVTLVSAIINLGA--PFNEMIALRGL--VPLYITINQRVP--  382 (480)
Q Consensus       312 d~~I~~vL~l~~g~iR~VLDVGCGtG~fAa~Lae~---gV~Vv~vd~d~~~--~~~~~iA~rgl--ip~~~~~ae~LP--  382 (480)
                      ..++...+.+.++.  +|||+|||+|.++..++++   +..+++++++...  .+...+...|.  +.+..+++..++  
T Consensus       239 s~lv~~~l~~~~g~--~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~  316 (444)
T PRK14902        239 SMLVAPALDPKGGD--TVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEK  316 (444)
T ss_pred             HHHHHHHhCCCCCC--EEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccch
Confidence            33555666666654  8999999999999988874   3567777765311  11222222232  233444444432  


Q ss_pred             CCCCccchheecc------cccCccC------hhc-------HHHHHHHHHhcccCCcEEEEeeccC-ChhhHHHHHHHH
Q 046488          383 FFDNTLDLIHTTR------FLDGWID------FVL-------LDFILYDWDRVLRPGGLLWIDSFFC-AKEDMNDYLEVF  442 (480)
Q Consensus       383 Fpd~SFDlV~ss~------vL~h~~d------~~~-------l~~~L~EI~RVLKPGG~fiI~~f~~-~~edL~~~~~~l  442 (480)
                      ++ ++||+|++.-      .+.+.++      ...       ...++.++.|+|||||.++++.-.- ..+....+...+
T Consensus       317 ~~-~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~Ene~vv~~~l  395 (444)
T PRK14902        317 FA-EKFDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTIEKEENEEVIEAFL  395 (444)
T ss_pred             hc-ccCCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCCChhhhHHHHHHHH
Confidence            33 7899998631      1111110      111       1357999999999999998763211 112222334455


Q ss_pred             HHc-CceeeEE-----------------EEeeccCCCCcceeEEEEEEeC
Q 046488          443 KML-KYKKHKW-----------------VVVPKRDKDDREVFFSAVLEKP  474 (480)
Q Consensus       443 ~~l-Gfkkl~W-----------------~~~~k~d~~~~E~~lsav~qKP  474 (480)
                      ++. .|+.+..                 .+.+..  ...+.|+.|+++|.
T Consensus       396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~P~~--~~~dGfF~a~l~k~  443 (444)
T PRK14902        396 EEHPEFELVPLQHEKPDELVYEVKDGYLQILPND--YGTDGFFIAKLRKK  443 (444)
T ss_pred             HhCCCcEEecccccccccccccccCCeEEECCCC--CCCCCeEEEEEEEC
Confidence            554 2543321                 111111  23578899999884

>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases

Probab=98.53  E-value=2.1e-07  Score=86.42  Aligned_cols=96  Identities=25%  Similarity=0.290  Sum_probs=60.9

Q ss_pred             CeEEEECCCCcHHHHHHhhCCC--EEEEEecCCChhHHH----HHHHhCC--CCeeeec-ccCCCCCCCccchheecccc
Q 046488          327 RIGLDFSIGTGTFAARMREFNV--TLVSAIINLGAPFNE----MIALRGL--VPLYITI-NQRVPFFDNTLDLIHTTRFL  397 (480)
Q Consensus       327 R~VLDVGCGtG~fAa~Lae~gV--~Vv~vd~d~~~~~~~----~iA~rgl--ip~~~~~-ae~LPFpd~SFDlV~ss~vL  397 (480)
                      .+|||+|||+|.++..+++++.  .++.++.+.  .+..    .+...+.  +.++..+ .+.++  ++.||+|+|+=-+
T Consensus        33 ~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~--~a~~~a~~n~~~n~~~~v~~~~~d~~~~~~--~~~fD~Iv~NPP~  108 (170)
T PF05175_consen   33 GRVLDLGCGSGVISLALAKRGPDAKVTAVDINP--DALELAKRNAERNGLENVEVVQSDLFEALP--DGKFDLIVSNPPF  108 (170)
T ss_dssp             CEEEEETSTTSHHHHHHHHTSTCEEEEEEESBH--HHHHHHHHHHHHTTCTTEEEEESSTTTTCC--TTCEEEEEE---S
T ss_pred             CeEEEecCChHHHHHHHHHhCCCCEEEEEcCCH--HHHHHHHHHHHhcCcccccccccccccccc--ccceeEEEEccch
Confidence            4799999999999999998744  477777652  2221    2222222  2233333 34343  7999999997443


Q ss_pred             cCccC--hhcHHHHHHHHHhcccCCcEEEEe
Q 046488          398 DGWID--FVLLDFILYDWDRVLRPGGLLWID  426 (480)
Q Consensus       398 ~h~~d--~~~l~~~L~EI~RVLKPGG~fiI~  426 (480)
                      +.-.+  ...+..++.+..+.|||||.+++.
T Consensus       109 ~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv  139 (170)
T PF05175_consen  109 HAGGDDGLDLLRDFIEQARRYLKPGGRLFLV  139 (170)
T ss_dssp             BTTSHCHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             hcccccchhhHHHHHHHHHHhccCCCEEEEE
Confidence            22211  123467899999999999999764

; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....

>PRK14904 16S rRNA methyltransferase B; Provisional

Probab=98.52  E-value=1.6e-06  Score=92.45  Aligned_cols=127  Identities=17%  Similarity=0.138  Sum_probs=74.6

Q ss_pred             hHHHhcCCCCCCCCeEEEECCCCcHHHHHHhhC---CCEEEEEecCCChhHHH----HHHHhCC--CCeeeecccCCCCC
Q 046488          314 LIPEVLDIKPGEIRIGLDFSIGTGTFAARMREF---NVTLVSAIINLGAPFNE----MIALRGL--VPLYITINQRVPFF  384 (480)
Q Consensus       314 ~I~~vL~l~~g~iR~VLDVGCGtG~fAa~Lae~---gV~Vv~vd~d~~~~~~~----~iA~rgl--ip~~~~~ae~LPFp  384 (480)
                      +...++...++.  +|||+|||+|..+..+++.   +..+++++++.  .+..    .+...|.  +.+..+++..++ +
T Consensus       241 l~~~~l~~~~g~--~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~--~~l~~~~~~~~~~g~~~v~~~~~Da~~~~-~  315 (445)
T PRK14904        241 LACLLLNPQPGS--TVLDLCAAPGGKSTFMAELMQNRGQITAVDRYP--QKLEKIRSHASALGITIIETIEGDARSFS-P  315 (445)
T ss_pred             HHHHhcCCCCCC--EEEEECCCCCHHHHHHHHHhCCCcEEEEEECCH--HHHHHHHHHHHHhCCCeEEEEeCcccccc-c
Confidence            444566665654  8999999999998887763   34777877653  2222    2222232  223344555554 5


Q ss_pred             CCccchheec------ccccC-----cc-Chhc-------HHHHHHHHHhcccCCcEEEEeeccCCh-hhHHHHHHHHHH
Q 046488          385 DNTLDLIHTT------RFLDG-----WI-DFVL-------LDFILYDWDRVLRPGGLLWIDSFFCAK-EDMNDYLEVFKM  444 (480)
Q Consensus       385 d~SFDlV~ss------~vL~h-----~~-d~~~-------l~~~L~EI~RVLKPGG~fiI~~f~~~~-edL~~~~~~l~~  444 (480)
                      +++||+|++.      ..+..     |. .+..       ...+|.++.++|||||+++++...-.. ++.......+++
T Consensus       316 ~~~fD~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~~~~Ene~~v~~~l~~  395 (445)
T PRK14904        316 EEQPDAILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSIEPEENELQIEAFLQR  395 (445)
T ss_pred             CCCCCEEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhHHHHHHHHHHh
Confidence            6789999952      11211     11 1111       135899999999999999997533322 222333445554


Q ss_pred             c
Q 046488          445 L  445 (480)
Q Consensus       445 l  445 (480)
                      .
T Consensus       396 ~  396 (445)
T PRK14904        396 H  396 (445)
T ss_pred             C
Confidence            3

>TIGR03438 probable methyltransferase

Probab=98.51  E-value=3.7e-07  Score=92.48  Aligned_cols=97  Identities=11%  Similarity=-0.035  Sum_probs=63.7

Q ss_pred             CeEEEECCCCcHHHHHHhhC---CCEEEEEecCCChhHHHHHHHh-----CCCC--eeeeccc-CCCCCCCc----cchh
Q 046488          327 RIGLDFSIGTGTFAARMREF---NVTLVSAIINLGAPFNEMIALR-----GLVP--LYITINQ-RVPFFDNT----LDLI  391 (480)
Q Consensus       327 R~VLDVGCGtG~fAa~Lae~---gV~Vv~vd~d~~~~~~~~iA~r-----glip--~~~~~ae-~LPFpd~S----FDlV  391 (480)
                      .+|||+|||||..+..|++.   +..++++|++.  .++...+.+     ..+.  .+.++.. .++++...    ..++
T Consensus        65 ~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~--~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~~~  142 (301)
T TIGR03438        65 CELVELGSGSSRKTRLLLDALRQPARYVPIDISA--DALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRLGF  142 (301)
T ss_pred             CeEEecCCCcchhHHHHHHhhccCCeEEEEECCH--HHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCeEEE
Confidence            47999999999999999876   57888887653  444333222     1222  2345533 34554433    3344


Q ss_pred             eecccccCccChhcHHHHHHHHHhcccCCcEEEEe
Q 046488          392 HTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWID  426 (480)
Q Consensus       392 ~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~  426 (480)
                      ++...+.++... ....+|++++++|+|||.|+|.
T Consensus       143 ~~gs~~~~~~~~-e~~~~L~~i~~~L~pgG~~lig  176 (301)
T TIGR03438       143 FPGSTIGNFTPE-EAVAFLRRIRQLLGPGGGLLIG  176 (301)
T ss_pred             EecccccCCCHH-HHHHHHHHHHHhcCCCCEEEEe
Confidence            445566666543 3467999999999999999986

This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases

>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes

Probab=98.48  E-value=9.4e-07  Score=88.52  Aligned_cols=126  Identities=20%  Similarity=0.319  Sum_probs=90.0

Q ss_pred             CCCeEEEECCCCcHHHHHHhhCCCEEEEEecCCChhHHHHHHHhCCCCeeeecccCCCCCCCccchheecccccCccChh
Q 046488          325 EIRIGLDFSIGTGTFAARMREFNVTLVSAIINLGAPFNEMIALRGLVPLYITINQRVPFFDNTLDLIHTTRFLDGWIDFV  404 (480)
Q Consensus       325 ~iR~VLDVGCGtG~fAa~Lae~gV~Vv~vd~d~~~~~~~~iA~rglip~~~~~ae~LPFpd~SFDlV~ss~vL~h~~d~~  404 (480)
                      ...++||||+|-|..+..|+..--.|.++..  +..|..+.+++|. .+. . ...+.-.+..||+|.|..+|....++.
T Consensus        94 ~~~~lLDlGAGdG~VT~~l~~~f~~v~aTE~--S~~Mr~rL~~kg~-~vl-~-~~~w~~~~~~fDvIscLNvLDRc~~P~  168 (265)
T PF05219_consen   94 KDKSLLDLGAGDGEVTERLAPLFKEVYATEA--SPPMRWRLSKKGF-TVL-D-IDDWQQTDFKFDVISCLNVLDRCDRPL  168 (265)
T ss_pred             cCCceEEecCCCcHHHHHHHhhcceEEeecC--CHHHHHHHHhCCC-eEE-e-hhhhhccCCceEEEeehhhhhccCCHH
Confidence            3467999999999999999987545555553  3567777777664 222 1 111322356899999999998777774


Q ss_pred             cHHHHHHHHHhcccCCcEEEEee---------c-----cCChh-----------hHHHHHHHHHHcCceeeEEEEeecc
Q 046488          405 LLDFILYDWDRVLRPGGLLWIDS---------F-----FCAKE-----------DMNDYLEVFKMLKYKKHKWVVVPKR  458 (480)
Q Consensus       405 ~l~~~L~EI~RVLKPGG~fiI~~---------f-----~~~~e-----------dL~~~~~~l~~lGfkkl~W~~~~k~  458 (480)
                         .+|.+|++.|+|+|+++++-         +     .++.+           ++..+.+.++.+||+-..|...+-.
T Consensus       169 ---~LL~~i~~~l~p~G~lilAvVlP~~pyVE~~~g~~~~P~e~l~~~g~~~E~~v~~l~~v~~p~GF~v~~~tr~PYL  244 (265)
T PF05219_consen  169 ---TLLRDIRRALKPNGRLILAVVLPFRPYVEFGGGKSNRPSELLPVKGATFEEQVSSLVNVFEPAGFEVERWTRLPYL  244 (265)
T ss_pred             ---HHHHHHHHHhCCCCEEEEEEEecccccEEcCCCCCCCchhhcCCCCCcHHHHHHHHHHHHHhcCCEEEEEeccCcc
Confidence               69999999999999999861         1     11221           1234558999999999999887653

The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.

>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific

Probab=98.43  E-value=2e-06  Score=86.83  Aligned_cols=117  Identities=20%  Similarity=0.148  Sum_probs=70.7

Q ss_pred             CeEEEECCCCcHHHHHHhhC--CCEEEEEecCCChh--HHHHHHHhCC---CCeeeecccCCCCCCCccchheecc----
Q 046488          327 RIGLDFSIGTGTFAARMREF--NVTLVSAIINLGAP--FNEMIALRGL---VPLYITINQRVPFFDNTLDLIHTTR----  395 (480)
Q Consensus       327 R~VLDVGCGtG~fAa~Lae~--gV~Vv~vd~d~~~~--~~~~iA~rgl---ip~~~~~ae~LPFpd~SFDlV~ss~----  395 (480)
                      .+|||+|||+|.++..++++  +..+++++.+..+-  +...+...+.   +.+..++... ++++++||+|+++=    
T Consensus       123 ~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~-~~~~~~fD~Iv~NPPy~~  201 (284)
T TIGR03533       123 KRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFA-ALPGRKYDLIVSNPPYVD  201 (284)
T ss_pred             CEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhh-ccCCCCccEEEECCCCCC
Confidence            47999999999999999986  56788887653211  1112222232   2334444321 34567899999851    


Q ss_pred             --cc-------cCccC---------hhcHHHHHHHHHhcccCCcEEEEeeccCChhhHHHHHHHHHHcCce
Q 046488          396 --FL-------DGWID---------FVLLDFILYDWDRVLRPGGLLWIDSFFCAKEDMNDYLEVFKMLKYK  448 (480)
Q Consensus       396 --vL-------~h~~d---------~~~l~~~L~EI~RVLKPGG~fiI~~f~~~~edL~~~~~~l~~lGfk  448 (480)
                        .+       .+.+.         ......++.++.++|+|||++++....    +.+.+.+++...||.
T Consensus       202 ~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g~----~~~~v~~~~~~~~~~  268 (284)
T TIGR03533       202 AEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVGN----SMEALEEAYPDVPFT  268 (284)
T ss_pred             ccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECc----CHHHHHHHHHhCCCc
Confidence              11       11110         011246789999999999999875432    113456677777764

Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.

>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional

Probab=98.43  E-value=3e-06  Score=90.22  Aligned_cols=152  Identities=16%  Similarity=0.086  Sum_probs=86.2

Q ss_pred             hhhhHHHhcC-CCCCCCCeEEEECCCCcHHHHHHhhC--CCEEEEEecCCChhHHH----HHHHhCC-CCeeeecccCCC
Q 046488          311 ADFLIPEVLD-IKPGEIRIGLDFSIGTGTFAARMREF--NVTLVSAIINLGAPFNE----MIALRGL-VPLYITINQRVP  382 (480)
Q Consensus       311 ad~~I~~vL~-l~~g~iR~VLDVGCGtG~fAa~Lae~--gV~Vv~vd~d~~~~~~~----~iA~rgl-ip~~~~~ae~LP  382 (480)
                      ++.+++.++. +.++  .+|||+|||+|.++..++..  +..++++|.+.  .+.+    .+...+. +.+..++.....
T Consensus       238 TE~LVe~aL~~l~~~--~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~--~ALe~AreNa~~~g~rV~fi~gDl~e~~  313 (423)
T PRK14966        238 TEHLVEAVLARLPEN--GRVWDLGTGSGAVAVTVALERPDAFVRASDISP--PALETARKNAADLGARVEFAHGSWFDTD  313 (423)
T ss_pred             HHHHHHHhhhccCCC--CEEEEEeChhhHHHHHHHHhCCCCEEEEEECCH--HHHHHHHHHHHHcCCcEEEEEcchhccc
Confidence            3445555554 3333  37999999999999988864  56777877653  3322    2222221 333444432222


Q ss_pred             C-CCCccchheecccccCc---------------------cC-hhcHHHHHHHHHhcccCCcEEEEeeccCChhhHHHHH
Q 046488          383 F-FDNTLDLIHTTRFLDGW---------------------ID-FVLLDFILYDWDRVLRPGGLLWIDSFFCAKEDMNDYL  439 (480)
Q Consensus       383 F-pd~SFDlV~ss~vL~h~---------------------~d-~~~l~~~L~EI~RVLKPGG~fiI~~f~~~~edL~~~~  439 (480)
                      + .+++||+|+|+--...-                     .+ ......++.++.+.|+|||++++..-.   .+.+.+.
T Consensus       314 l~~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEiG~---~Q~e~V~  390 (423)
T PRK14966        314 MPSEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEHGF---DQGAAVR  390 (423)
T ss_pred             cccCCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEECc---cHHHHHH
Confidence            2 24689999995311100                     00 011236778888999999998874432   2334566


Q ss_pred             HHHHHcCceeeEEEEeeccCCCCcceeEEEEEEe
Q 046488          440 EVFKMLKYKKHKWVVVPKRDKDDREVFFSAVLEK  473 (480)
Q Consensus       440 ~~l~~lGfkkl~W~~~~k~d~~~~E~~lsav~qK  473 (480)
                      ++++..||..+.-    ..|-...+.++.+.+.|
T Consensus       391 ~ll~~~Gf~~v~v----~kDl~G~dR~v~~~~~~  420 (423)
T PRK14966        391 GVLAENGFSGVET----LPDLAGLDRVTLGKYMK  420 (423)
T ss_pred             HHHHHCCCcEEEE----EEcCCCCcEEEEEEEhh
Confidence            7788888865432    22322345555555544

>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]

Probab=98.42  E-value=7.4e-07  Score=87.35  Aligned_cols=97  Identities=15%  Similarity=0.113  Sum_probs=72.6

Q ss_pred             CCCCCeEEEECCCCcHHHHHHhhC--CCEEEEEecCCChhHHHHHHHhCCCC--eeeecccCCCCCCCccchheeccccc
Q 046488          323 PGEIRIGLDFSIGTGTFAARMREF--NVTLVSAIINLGAPFNEMIALRGLVP--LYITINQRVPFFDNTLDLIHTTRFLD  398 (480)
Q Consensus       323 ~g~iR~VLDVGCGtG~fAa~Lae~--gV~Vv~vd~d~~~~~~~~iA~rglip--~~~~~ae~LPFpd~SFDlV~ss~vL~  398 (480)
                      ....++|.|+|||+|..+..|+++  +..+.++|  .+..|.+.. ++++..  +..++...+- ++..+|+++++.+|+
T Consensus        28 ~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiD--sS~~Mla~A-a~rlp~~~f~~aDl~~w~-p~~~~dllfaNAvlq  103 (257)
T COG4106          28 LERPRRVVDLGCGPGNSTELLARRWPDAVITGID--SSPAMLAKA-AQRLPDATFEEADLRTWK-PEQPTDLLFANAVLQ  103 (257)
T ss_pred             ccccceeeecCCCCCHHHHHHHHhCCCCeEeecc--CCHHHHHHH-HHhCCCCceecccHhhcC-CCCccchhhhhhhhh
Confidence            344578999999999999999998  55666654  445666555 444443  3345555553 678899999999987


Q ss_pred             CccChhcHHHHHHHHHhcccCCcEEEEe
Q 046488          399 GWIDFVLLDFILYDWDRVLRPGGLLWID  426 (480)
Q Consensus       399 h~~d~~~l~~~L~EI~RVLKPGG~fiI~  426 (480)
                      -+++.   ..+|..+.--|.|||.+.+.
T Consensus       104 WlpdH---~~ll~rL~~~L~Pgg~LAVQ  128 (257)
T COG4106         104 WLPDH---PELLPRLVSQLAPGGVLAVQ  128 (257)
T ss_pred             hcccc---HHHHHHHHHhhCCCceEEEE
Confidence            66666   46999999999999999885

>KOG2940 consensus Predicted methyltransferase [General function prediction only]

Probab=98.41  E-value=4.7e-07  Score=89.44  Aligned_cols=105  Identities=17%  Similarity=0.257  Sum_probs=74.3

Q ss_pred             HhcCCCCCCCCeEEEECCCCcHHHHHHhhCCCEEEEEecCCChhHHHHHHHh--CCCC--eeeecccCCCCCCCccchhe
Q 046488          317 EVLDIKPGEIRIGLDFSIGTGTFAARMREFNVTLVSAIINLGAPFNEMIALR--GLVP--LYITINQRVPFFDNTLDLIH  392 (480)
Q Consensus       317 ~vL~l~~g~iR~VLDVGCGtG~fAa~Lae~gV~Vv~vd~d~~~~~~~~iA~r--glip--~~~~~ae~LPFpd~SFDlV~  392 (480)
                      .+.+++.. ...++|||||.|..+..|...||.-+.. +|.+..+....+..  ..+.  ..+++.|.|+|.+++||+|+
T Consensus        65 rvfD~kk~-fp~a~diGcs~G~v~rhl~~e~vekli~-~DtS~~M~~s~~~~qdp~i~~~~~v~DEE~Ldf~ens~DLii  142 (325)
T KOG2940|consen   65 RVFDCKKS-FPTAFDIGCSLGAVKRHLRGEGVEKLIM-MDTSYDMIKSCRDAQDPSIETSYFVGDEEFLDFKENSVDLII  142 (325)
T ss_pred             HHHHHhhh-CcceeecccchhhhhHHHHhcchhheee-eecchHHHHHhhccCCCceEEEEEecchhcccccccchhhhh
Confidence            45555543 4579999999999999999988653221 23333454443322  2222  23566899999999999999


Q ss_pred             ecccccCccChhcHHHHHHHHHhcccCCcEEEEe
Q 046488          393 TTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWID  426 (480)
Q Consensus       393 ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~  426 (480)
                      ++..+ ||.++-  ...+..++-.|||+|.|+-+
T Consensus       143 sSlsl-HW~NdL--Pg~m~~ck~~lKPDg~Fias  173 (325)
T KOG2940|consen  143 SSLSL-HWTNDL--PGSMIQCKLALKPDGLFIAS  173 (325)
T ss_pred             hhhhh-hhhccC--chHHHHHHHhcCCCccchhH
Confidence            98887 576542  45899999999999998764

>PHA03411 putative methyltransferase; Provisional

Probab=98.40  E-value=2.1e-06  Score=86.86  Aligned_cols=118  Identities=16%  Similarity=0.099  Sum_probs=79.0

Q ss_pred             CeEEEECCCCcHHHHHHhhC--CCEEEEEecCCChhHHHHHHHhC--CCCeeeecccCCCCCCCccchheecccccCccC
Q 046488          327 RIGLDFSIGTGTFAARMREF--NVTLVSAIINLGAPFNEMIALRG--LVPLYITINQRVPFFDNTLDLIHTTRFLDGWID  402 (480)
Q Consensus       327 R~VLDVGCGtG~fAa~Lae~--gV~Vv~vd~d~~~~~~~~iA~rg--lip~~~~~ae~LPFpd~SFDlV~ss~vL~h~~d  402 (480)
                      .+|||+|||+|.++..++.+  +..+++++.+   +...+.+++.  .+.+..++...+. .+++||+|+++--+.+...
T Consensus        66 grVLDLGcGsGilsl~la~r~~~~~V~gVDis---p~al~~Ar~n~~~v~~v~~D~~e~~-~~~kFDlIIsNPPF~~l~~  141 (279)
T PHA03411         66 GKVLDLCAGIGRLSFCMLHRCKPEKIVCVELN---PEFARIGKRLLPEAEWITSDVFEFE-SNEKFDVVISNPPFGKINT  141 (279)
T ss_pred             CeEEEcCCCCCHHHHHHHHhCCCCEEEEEECC---HHHHHHHHHhCcCCEEEECchhhhc-ccCCCcEEEEcCCccccCc
Confidence            47999999999999888765  4678888766   2333444443  2344455555544 3578999999766655321


Q ss_pred             h--h-------------c--HHHHHHHHHhcccCCcEEEEe----eccCChhhHHHHHHHHHHcCce
Q 046488          403 F--V-------------L--LDFILYDWDRVLRPGGLLWID----SFFCAKEDMNDYLEVFKMLKYK  448 (480)
Q Consensus       403 ~--~-------------~--l~~~L~EI~RVLKPGG~fiI~----~f~~~~edL~~~~~~l~~lGfk  448 (480)
                      .  .             .  +...+....++|+|+|.+++.    .++...-.-++|..+++..||.
T Consensus       142 ~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~yss~~~y~~sl~~~~y~~~l~~~g~~  208 (279)
T PHA03411        142 TDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAYSGRPYYDGTMKSNKYLKWSKQTGLV  208 (279)
T ss_pred             hhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEEEeccccccccCCHHHHHHHHHhcCcE
Confidence            1  0             0  246788889999999987765    1232222346788899999986

>PRK13256 thiopurine S-methyltransferase; Reviewed

Probab=98.38  E-value=2.2e-06  Score=84.44  Aligned_cols=99  Identities=8%  Similarity=-0.099  Sum_probs=74.2

Q ss_pred             CeEEEECCCCcHHHHHHhhCCCEEEEEecCCChhHHHHHHHhC------------------CCCeeeecccCCCCC---C
Q 046488          327 RIGLDFSIGTGTFAARMREFNVTLVSAIINLGAPFNEMIALRG------------------LVPLYITINQRVPFF---D  385 (480)
Q Consensus       327 R~VLDVGCGtG~fAa~Lae~gV~Vv~vd~d~~~~~~~~iA~rg------------------lip~~~~~ae~LPFp---d  385 (480)
                      .+||+.|||.|.-+..|+++|..|++++++.  .+.+++.++.                  .+.++.++.-.++..   -
T Consensus        45 ~rvLvPgCGkg~D~~~LA~~G~~V~GvDlS~--~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~~~~  122 (226)
T PRK13256         45 SVCLIPMCGCSIDMLFFLSKGVKVIGIELSE--KAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIANNL  122 (226)
T ss_pred             CeEEEeCCCChHHHHHHHhCCCcEEEEecCH--HHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCcccccc
Confidence            4899999999999999999999999998763  3333332221                  234455555556532   2


Q ss_pred             CccchheecccccCccChhcHHHHHHHHHhcccCCcEEEEeec
Q 046488          386 NTLDLIHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDSF  428 (480)
Q Consensus       386 ~SFDlV~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~f  428 (480)
                      +.||+|+-..+|+++++. ....+...+.++|+|||.+++..+
T Consensus       123 ~~fD~VyDra~~~Alpp~-~R~~Y~~~l~~lL~pgg~llll~~  164 (226)
T PRK13256        123 PVFDIWYDRGAYIALPND-LRTNYAKMMLEVCSNNTQILLLVM  164 (226)
T ss_pred             CCcCeeeeehhHhcCCHH-HHHHHHHHHHHHhCCCcEEEEEEE
Confidence            689999988888888654 347899999999999999887654

>TIGR00536 hemK_fam HemK family putative methylases

Probab=98.37  E-value=3e-06  Score=85.15  Aligned_cols=121  Identities=17%  Similarity=0.144  Sum_probs=71.1

Q ss_pred             CeEEEECCCCcHHHHHHhhC--CCEEEEEecCCChh--HHHHHHHhCC---CCeeeecccCCCCCCCccchheecc----
Q 046488          327 RIGLDFSIGTGTFAARMREF--NVTLVSAIINLGAP--FNEMIALRGL---VPLYITINQRVPFFDNTLDLIHTTR----  395 (480)
Q Consensus       327 R~VLDVGCGtG~fAa~Lae~--gV~Vv~vd~d~~~~--~~~~iA~rgl---ip~~~~~ae~LPFpd~SFDlV~ss~----  395 (480)
                      .+|||+|||+|.++..++..  +..+++++.+..+-  +...+...+.   +.++.++... +++++.||+|+++-    
T Consensus       116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~-~~~~~~fDlIvsNPPyi~  194 (284)
T TIGR00536       116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFE-PLAGQKIDIIVSNPPYID  194 (284)
T ss_pred             CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhc-cCcCCCccEEEECCCCCC
Confidence            47999999999999999975  46788887653211  1111122222   2333443221 34556899999851    


Q ss_pred             ---------cccCccC---------hhcHHHHHHHHHhcccCCcEEEEeeccCChhhHHHHHHHHH-HcCceeeE
Q 046488          396 ---------FLDGWID---------FVLLDFILYDWDRVLRPGGLLWIDSFFCAKEDMNDYLEVFK-MLKYKKHK  451 (480)
Q Consensus       396 ---------vL~h~~d---------~~~l~~~L~EI~RVLKPGG~fiI~~f~~~~edL~~~~~~l~-~lGfkkl~  451 (480)
                               ++.|-+.         ......++.++.++|+|||++++..-....   ..+.+++. ..||..+.
T Consensus       195 ~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~~q~---~~~~~~~~~~~~~~~~~  266 (284)
T TIGR00536       195 EEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGNWQQ---KSLKELLRIKFTWYDVE  266 (284)
T ss_pred             cchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECccHH---HHHHHHHHhcCCCceeE
Confidence                     1111110         012356899999999999999885433222   23445555 35675543

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.

>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]

Probab=98.33  E-value=2.3e-06  Score=87.36  Aligned_cols=114  Identities=23%  Similarity=0.272  Sum_probs=66.9

Q ss_pred             hhhhhHHHhcCCCCCCCCeEEEECCCCcHHHHHHhhCCC--EEEEEecCCCh--hHHHHHHHhCCCC--eeeecccCCCC
Q 046488          310 TADFLIPEVLDIKPGEIRIGLDFSIGTGTFAARMREFNV--TLVSAIINLGA--PFNEMIALRGLVP--LYITINQRVPF  383 (480)
Q Consensus       310 ~ad~~I~~vL~l~~g~iR~VLDVGCGtG~fAa~Lae~gV--~Vv~vd~d~~~--~~~~~iA~rglip--~~~~~ae~LPF  383 (480)
                      |+..++. -|+...+.  +|||+|||.|-+++.|++.+-  .++-+|.+.-+  -++..++..+.-.  ++.++ --.+.
T Consensus       146 GS~lLl~-~l~~~~~~--~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~-~~~~v  221 (300)
T COG2813         146 GSRLLLE-TLPPDLGG--KVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVENTEVWASN-LYEPV  221 (300)
T ss_pred             HHHHHHH-hCCccCCC--cEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEec-ccccc
Confidence            4444443 33433333  799999999999999998743  44444443211  1112223333322  23333 22334


Q ss_pred             CCCccchheecccccCccC--hhcHHHHHHHHHhcccCCcEEEEeec
Q 046488          384 FDNTLDLIHTTRFLDGWID--FVLLDFILYDWDRVLRPGGLLWIDSF  428 (480)
Q Consensus       384 pd~SFDlV~ss~vL~h~~d--~~~l~~~L~EI~RVLKPGG~fiI~~f  428 (480)
                      .+ +||+|+|+==+|.-.+  ...-+.++.+..+.|++||.++|..-
T Consensus       222 ~~-kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan  267 (300)
T COG2813         222 EG-KFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVAN  267 (300)
T ss_pred             cc-cccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEEEc
Confidence            44 9999999755543221  11124689999999999999998753

>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=98.30  E-value=1.6e-06  Score=89.30  Aligned_cols=98  Identities=21%  Similarity=0.129  Sum_probs=61.7

Q ss_pred             HhcCCCCCCCCeEEEECCCCcHHHHHHhhC-C--CEEEEEecCCCh--hHHHHHHHhCC--CCeeeecccCCCCCCCccc
Q 046488          317 EVLDIKPGEIRIGLDFSIGTGTFAARMREF-N--VTLVSAIINLGA--PFNEMIALRGL--VPLYITINQRVPFFDNTLD  389 (480)
Q Consensus       317 ~vL~l~~g~iR~VLDVGCGtG~fAa~Lae~-g--V~Vv~vd~d~~~--~~~~~iA~rgl--ip~~~~~ae~LPFpd~SFD  389 (480)
                      +.++++++.  +|||+|||+|.+++.+++. +  ..+++++.+...  .+...++..+.  +....+++...+.....||
T Consensus        74 ~~L~i~~g~--~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~~~~~fD  151 (322)
T PRK13943         74 EWVGLDKGM--RVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVPEFAPYD  151 (322)
T ss_pred             HhcCCCCCC--EEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhcccccCCcc
Confidence            344565554  8999999999999999875 2  246777655211  11222222232  2233455444555557899


Q ss_pred             hheecccccCccChhcHHHHHHHHHhcccCCcEEEE
Q 046488          390 LIHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWI  425 (480)
Q Consensus       390 lV~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI  425 (480)
                      +|++...+.+         ....+.++|||||.+++
T Consensus       152 ~Ii~~~g~~~---------ip~~~~~~LkpgG~Lvv  178 (322)
T PRK13943        152 VIFVTVGVDE---------VPETWFTQLKEGGRVIV  178 (322)
T ss_pred             EEEECCchHH---------hHHHHHHhcCCCCEEEE
Confidence            9998765433         23456789999999877

>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=98.30  E-value=3.8e-06  Score=85.79  Aligned_cols=117  Identities=19%  Similarity=0.117  Sum_probs=68.9

Q ss_pred             CeEEEECCCCcHHHHHHhhC--CCEEEEEecCCChh--HHHHHHHhCC---CCeeeecccCCCCCCCccchheecc----
Q 046488          327 RIGLDFSIGTGTFAARMREF--NVTLVSAIINLGAP--FNEMIALRGL---VPLYITINQRVPFFDNTLDLIHTTR----  395 (480)
Q Consensus       327 R~VLDVGCGtG~fAa~Lae~--gV~Vv~vd~d~~~~--~~~~iA~rgl---ip~~~~~ae~LPFpd~SFDlV~ss~----  395 (480)
                      .+|||+|||+|.++..++..  +..+++++++..+-  +...+...+.   +.+..++... ++++++||+|+++=    
T Consensus       135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~-~l~~~~fDlIvsNPPyi~  213 (307)
T PRK11805        135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFA-ALPGRRYDLIVSNPPYVD  213 (307)
T ss_pred             CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhh-hCCCCCccEEEECCCCCC
Confidence            47999999999999999876  56788887653211  1112222232   3344444321 23467899999851    


Q ss_pred             --c-------ccCccC---------hhcHHHHHHHHHhcccCCcEEEEeeccCChhhHHHHHHHHHHcCce
Q 046488          396 --F-------LDGWID---------FVLLDFILYDWDRVLRPGGLLWIDSFFCAKEDMNDYLEVFKMLKYK  448 (480)
Q Consensus       396 --v-------L~h~~d---------~~~l~~~L~EI~RVLKPGG~fiI~~f~~~~edL~~~~~~l~~lGfk  448 (480)
                        .       +.+.+.         ......++.++.++|+|||++++..... .   ..+.+++...||.
T Consensus       214 ~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g~~-~---~~~~~~~~~~~~~  280 (307)
T PRK11805        214 AEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVGNS-R---VHLEEAYPDVPFT  280 (307)
T ss_pred             ccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEECcC-H---HHHHHHHhhCCCE
Confidence              0       111111         0112467899999999999998853321 1   2345556555543

>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]

Probab=98.29  E-value=2.1e-05  Score=75.52  Aligned_cols=117  Identities=22%  Similarity=0.220  Sum_probs=76.4

Q ss_pred             HhcCCCCCCCCeEEEECCCCcHHHHHHhhC--CCEEEEEecCCChhHHHHH----HHhCCCC---eeeecc-cCCCCCCC
Q 046488          317 EVLDIKPGEIRIGLDFSIGTGTFAARMREF--NVTLVSAIINLGAPFNEMI----ALRGLVP---LYITIN-QRVPFFDN  386 (480)
Q Consensus       317 ~vL~l~~g~iR~VLDVGCGtG~fAa~Lae~--gV~Vv~vd~d~~~~~~~~i----A~rglip---~~~~~a-e~LPFpd~  386 (480)
                      ..|.+.+++  +++|||||||+.+..++..  .-.+++++-+.  ++.+.+    ++-+ ++   ++.+++ +.|+=.+ 
T Consensus        28 s~L~~~~g~--~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~--~a~~~~~~N~~~fg-~~n~~vv~g~Ap~~L~~~~-  101 (187)
T COG2242          28 SKLRPRPGD--RLWDIGAGTGSITIEWALAGPSGRVIAIERDE--EALELIERNAARFG-VDNLEVVEGDAPEALPDLP-  101 (187)
T ss_pred             HhhCCCCCC--EEEEeCCCccHHHHHHHHhCCCceEEEEecCH--HHHHHHHHHHHHhC-CCcEEEEeccchHhhcCCC-
Confidence            456677775  8999999999999988833  45677776443  333322    2223 33   233442 3344333 


Q ss_pred             ccchheecccccCccChhcHHHHHHHHHhcccCCcEEEEeeccCChhhHHHHHHHHHHcCce
Q 046488          387 TLDLIHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDSFFCAKEDMNDYLEVFKMLKYK  448 (480)
Q Consensus       387 SFDlV~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~f~~~~edL~~~~~~l~~lGfk  448 (480)
                      +||.|+.... .+      ++.+|..+...|||||++++..-  .-+.+....+.++.+|+.
T Consensus       102 ~~daiFIGGg-~~------i~~ile~~~~~l~~ggrlV~nai--tlE~~~~a~~~~~~~g~~  154 (187)
T COG2242         102 SPDAIFIGGG-GN------IEEILEAAWERLKPGGRLVANAI--TLETLAKALEALEQLGGR  154 (187)
T ss_pred             CCCEEEECCC-CC------HHHHHHHHHHHcCcCCeEEEEee--cHHHHHHHHHHHHHcCCc
Confidence            8999998765 22      24689999999999999887421  233445566788888983

>PRK14903 16S rRNA methyltransferase B; Provisional

Probab=98.29  E-value=4.8e-06  Score=88.77  Aligned_cols=115  Identities=17%  Similarity=0.216  Sum_probs=71.2

Q ss_pred             hhHHHhcCCCCCCCCeEEEECCCCcHHHHHHhhC---CCEEEEEecCCCh--hHHHHHHHhCC--CCeeeecccCCC-CC
Q 046488          313 FLIPEVLDIKPGEIRIGLDFSIGTGTFAARMREF---NVTLVSAIINLGA--PFNEMIALRGL--VPLYITINQRVP-FF  384 (480)
Q Consensus       313 ~~I~~vL~l~~g~iR~VLDVGCGtG~fAa~Lae~---gV~Vv~vd~d~~~--~~~~~iA~rgl--ip~~~~~ae~LP-Fp  384 (480)
                      .++..++++.+|.  +|||+|||+|..+.++++.   +..++++|++...  .....+.+.|.  +.+..+++..++ +.
T Consensus       227 ~~~~~~l~~~~g~--~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~~~  304 (431)
T PRK14903        227 QIVPLLMELEPGL--RVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLTEYV  304 (431)
T ss_pred             HHHHHHhCCCCCC--EEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhhhh
Confidence            3555567776664  8999999999999888874   4577787765311  11122222232  223345555665 55


Q ss_pred             CCccchheec------ccccCccC------hh-------cHHHHHHHHHhcccCCcEEEEeecc
Q 046488          385 DNTLDLIHTT------RFLDGWID------FV-------LLDFILYDWDRVLRPGGLLWIDSFF  429 (480)
Q Consensus       385 d~SFDlV~ss------~vL~h~~d------~~-------~l~~~L~EI~RVLKPGG~fiI~~f~  429 (480)
                      +++||.|++.      ..+..-++      ..       ....+|.++.+.|||||+++.+...
T Consensus       305 ~~~fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs  368 (431)
T PRK14903        305 QDTFDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCT  368 (431)
T ss_pred             hccCCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence            7899999852      11211110      00       1145799999999999999887543

>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like

Probab=98.28  E-value=8.8e-06  Score=79.74  Aligned_cols=128  Identities=19%  Similarity=0.132  Sum_probs=76.4

Q ss_pred             CCCeEEEECCCCcHHHHHHhhCCCEEEEEecCCChhHHHHHHHh-----CCCCeee-ecccCCCCCCCccchheeccccc
Q 046488          325 EIRIGLDFSIGTGTFAARMREFNVTLVSAIINLGAPFNEMIALR-----GLVPLYI-TINQRVPFFDNTLDLIHTTRFLD  398 (480)
Q Consensus       325 ~iR~VLDVGCGtG~fAa~Lae~gV~Vv~vd~d~~~~~~~~iA~r-----glip~~~-~~ae~LPFpd~SFDlV~ss~vL~  398 (480)
                      ...++||.|+|.|..+..+.-.-...|++. +....+..++...     ..+..+. .-.+.+--.++.||+|++..|+.
T Consensus        55 ~~~~alDcGAGIGRVTk~lLl~~f~~VDlV-Ep~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~lg  133 (218)
T PF05891_consen   55 KFNRALDCGAGIGRVTKGLLLPVFDEVDLV-EPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPEEGKYDLIWIQWCLG  133 (218)
T ss_dssp             --SEEEEET-TTTHHHHHTCCCC-SEEEEE-ES-HHHHHHHHHHTCCGGCCEEEEEES-GGG----TT-EEEEEEES-GG
T ss_pred             CcceEEecccccchhHHHHHHHhcCEeEEe-ccCHHHHHHHHHHhcccCCCcceEEecCHhhccCCCCcEeEEEehHhhc
Confidence            457899999999999987754433334432 2223444444321     1222222 22555554568999999999999


Q ss_pred             CccChhcHHHHHHHHHhcccCCcEEEEee--------ccCChhh-----HHHHHHHHHHcCceeeEEEE
Q 046488          399 GWIDFVLLDFILYDWDRVLRPGGLLWIDS--------FFCAKED-----MNDYLEVFKMLKYKKHKWVV  454 (480)
Q Consensus       399 h~~d~~~l~~~L~EI~RVLKPGG~fiI~~--------f~~~~ed-----L~~~~~~l~~lGfkkl~W~~  454 (480)
                      |+.|.+ +..+|..+...|+|||+++|-.        .+...+.     .+.+.++++++|++-++-..
T Consensus       134 hLTD~d-lv~fL~RCk~~L~~~G~IvvKEN~~~~~~~~~D~~DsSvTRs~~~~~~lF~~AGl~~v~~~~  201 (218)
T PF05891_consen  134 HLTDED-LVAFLKRCKQALKPNGVIVVKENVSSSGFDEFDEEDSSVTRSDEHFRELFKQAGLRLVKEEK  201 (218)
T ss_dssp             GS-HHH-HHHHHHHHHHHEEEEEEEEEEEEEESSSEEEEETTTTEEEEEHHHHHHHHHHCT-EEEEEEE
T ss_pred             cCCHHH-HHHHHHHHHHhCcCCcEEEEEecCCCCCCcccCCccCeeecCHHHHHHHHHHcCCEEEEecc
Confidence            998876 4679999999999999988852        1111111     35688999999998765433

; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.

>smart00650 rADc Ribosomal RNA adenine dimethylases

Probab=98.27  E-value=3e-06  Score=78.39  Aligned_cols=100  Identities=10%  Similarity=0.062  Sum_probs=64.7

Q ss_pred             cCCCCCCCCeEEEECCCCcHHHHHHhhCCCEEEEEecCCChhHHHHHHHh----CCCCeeeecccCCCCCCCccchheec
Q 046488          319 LDIKPGEIRIGLDFSIGTGTFAARMREFNVTLVSAIINLGAPFNEMIALR----GLVPLYITINQRVPFFDNTLDLIHTT  394 (480)
Q Consensus       319 L~l~~g~iR~VLDVGCGtG~fAa~Lae~gV~Vv~vd~d~~~~~~~~iA~r----glip~~~~~ae~LPFpd~SFDlV~ss  394 (480)
                      +++.++  .+|||+|||+|.++..+++++..+++++.+.  .+.....++    ..+.++.+++..+++++..||.|+++
T Consensus         9 ~~~~~~--~~vLEiG~G~G~lt~~l~~~~~~v~~vE~~~--~~~~~~~~~~~~~~~v~ii~~D~~~~~~~~~~~d~vi~n   84 (169)
T smart00650        9 ANLRPG--DTVLEIGPGKGALTEELLERAARVTAIEIDP--RLAPRLREKFAAADNLTVIHGDALKFDLPKLQPYKVVGN   84 (169)
T ss_pred             cCCCCc--CEEEEECCCccHHHHHHHhcCCeEEEEECCH--HHHHHHHHHhccCCCEEEEECchhcCCccccCCCEEEEC
Confidence            344444  4899999999999999999877888888763  222222111    23445667788888888889999876


Q ss_pred             ccccCccChhcHHHHHHHHHhcccCCcEEEEe
Q 046488          395 RFLDGWIDFVLLDFILYDWDRVLRPGGLLWID  426 (480)
Q Consensus       395 ~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~  426 (480)
                      --+ ++.. ..+..++.+.  .+.++|.+++.
T Consensus        85 ~Py-~~~~-~~i~~~l~~~--~~~~~~~l~~q  112 (169)
T smart00650       85 LPY-NIST-PILFKLLEEP--PAFRDAVLMVQ  112 (169)
T ss_pred             CCc-ccHH-HHHHHHHhcC--CCcceEEEEEE
Confidence            433 3322 2223344332  25688888775

>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes

Probab=98.27  E-value=2.1e-06  Score=79.87  Aligned_cols=149  Identities=19%  Similarity=0.245  Sum_probs=78.3

Q ss_pred             HhcC-CCCCCCCeEEEECCCCcHHHHHHhhCC---CEEEEEecCCChhHHHHHHHhCCCCeeeec----ccCCCCCCCcc
Q 046488          317 EVLD-IKPGEIRIGLDFSIGTGTFAARMREFN---VTLVSAIINLGAPFNEMIALRGLVPLYITI----NQRVPFFDNTL  388 (480)
Q Consensus       317 ~vL~-l~~g~iR~VLDVGCGtG~fAa~Lae~g---V~Vv~vd~d~~~~~~~~iA~rglip~~~~~----ae~LPFpd~SF  388 (480)
                      +..+ +.++...+|||+||++|+|+..+.+++   ..++++|+....+.......++.+ .....    .+.++-....|
T Consensus        14 ~~~~~~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~~~~~~~~i~~d~-~~~~~~~~i~~~~~~~~~~~   92 (181)
T PF01728_consen   14 EKFKIFKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMDPLQNVSFIQGDI-TNPENIKDIRKLLPESGEKF   92 (181)
T ss_dssp             HTTSSS-TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTGS-TTEEBTTGGG-EEEEHSHHGGGSHGTTTCSE
T ss_pred             HHCCCCCcccccEEEEcCCcccceeeeeeecccccceEEEEeccccccccceeeeeccc-chhhHHHhhhhhccccccCc
Confidence            3344 455556799999999999999999987   677888875432210000001111 00011    22222223799


Q ss_pred             chheecccccC--------ccChhcHHHHHHHHHhcccCCcEEEEeeccCChhhHHHHHHHHHHcCceeeEEEEeeccCC
Q 046488          389 DLIHTTRFLDG--------WIDFVLLDFILYDWDRVLRPGGLLWIDSFFCAKEDMNDYLEVFKMLKYKKHKWVVVPKRDK  460 (480)
Q Consensus       389 DlV~ss~vL~h--------~~d~~~l~~~L~EI~RVLKPGG~fiI~~f~~~~edL~~~~~~l~~lGfkkl~W~~~~k~d~  460 (480)
                      |+|+|..+..-        ..........+.-+...|||||.|++-.|.....  ..+...++. .|+.+.+........
T Consensus        93 dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~~~~~--~~~~~~l~~-~F~~v~~~Kp~~sr~  169 (181)
T PF01728_consen   93 DLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFKGPEI--EELIYLLKR-CFSKVKIVKPPSSRS  169 (181)
T ss_dssp             SEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESSSTTS--HHHHHHHHH-HHHHEEEEE-TTSBT
T ss_pred             ceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEeccCccH--HHHHHHHHh-CCeEEEEEECcCCCC
Confidence            99998663211        1111111234445557799999988866553332  244444444 467676655443333


Q ss_pred             CCcceeEEE
Q 046488          461 DDREVFFSA  469 (480)
Q Consensus       461 ~~~E~~lsa  469 (480)
                      ...|.|+.+
T Consensus       170 ~s~E~Ylv~  178 (181)
T PF01728_consen  170 ESSEEYLVC  178 (181)
T ss_dssp             TCBEEEEES
T ss_pred             CccEEEEEE
Confidence            567888864

RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....

>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific

Probab=98.25  E-value=8.5e-06  Score=80.86  Aligned_cols=134  Identities=18%  Similarity=0.194  Sum_probs=76.3

Q ss_pred             hhhhHHHhcCC-CC-CCCCeEEEECCCCcHHHHHHhhC--CCEEEEEecCCChh--HHHHHHHhCCCCeeeecc-cCCCC
Q 046488          311 ADFLIPEVLDI-KP-GEIRIGLDFSIGTGTFAARMREF--NVTLVSAIINLGAP--FNEMIALRGLVPLYITIN-QRVPF  383 (480)
Q Consensus       311 ad~~I~~vL~l-~~-g~iR~VLDVGCGtG~fAa~Lae~--gV~Vv~vd~d~~~~--~~~~iA~rglip~~~~~a-e~LPF  383 (480)
                      ++.+++.++.. .+ ....+|||+|||+|.++..+++.  +..+++++.+..+-  ++..+. .....+..++. +.++-
T Consensus        70 Te~Lv~~~l~~~~~~~~~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~-~~~~~~~~~D~~~~l~~  148 (251)
T TIGR03704        70 TEFLVDEAAALARPRSGTLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLA-DAGGTVHEGDLYDALPT  148 (251)
T ss_pred             HHHHHHHHHHhhcccCCCCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHH-HcCCEEEEeechhhcch
Confidence            34455554432 11 12247999999999999998864  56788877653211  111121 22234444443 22321


Q ss_pred             -CCCccchheeccccc--------------Ccc--------C-hhcHHHHHHHHHhcccCCcEEEEeeccCChhhHHHHH
Q 046488          384 -FDNTLDLIHTTRFLD--------------GWI--------D-FVLLDFILYDWDRVLRPGGLLWIDSFFCAKEDMNDYL  439 (480)
Q Consensus       384 -pd~SFDlV~ss~vL~--------------h~~--------d-~~~l~~~L~EI~RVLKPGG~fiI~~f~~~~edL~~~~  439 (480)
                       ..+.||+|+++-=..              |.+        + .+.+..++..+.++|||||++++..-.   ++...+.
T Consensus       149 ~~~~~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~~---~~~~~v~  225 (251)
T TIGR03704       149 ALRGRVDILAANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETSE---RQAPLAV  225 (251)
T ss_pred             hcCCCEeEEEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECc---chHHHHH
Confidence             135799999852111              100        0 011246778888999999999986432   2345567


Q ss_pred             HHHHHcCce
Q 046488          440 EVFKMLKYK  448 (480)
Q Consensus       440 ~~l~~lGfk  448 (480)
                      .+++..||+
T Consensus       226 ~~l~~~g~~  234 (251)
T TIGR03704       226 EAFARAGLI  234 (251)
T ss_pred             HHHHHCCCC
Confidence            777777765

This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.

>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]

Probab=98.22  E-value=9.4e-06  Score=65.35  Aligned_cols=94  Identities=26%  Similarity=0.351  Sum_probs=60.1

Q ss_pred             EEEECCCCcHHH--HHHhhCCCEEEEEecCCChhHHHHHHHh---CC---CCeeeeccc--CCCCCC-Cccchheecccc
Q 046488          329 GLDFSIGTGTFA--ARMREFNVTLVSAIINLGAPFNEMIALR---GL---VPLYITINQ--RVPFFD-NTLDLIHTTRFL  397 (480)
Q Consensus       329 VLDVGCGtG~fA--a~Lae~gV~Vv~vd~d~~~~~~~~iA~r---gl---ip~~~~~ae--~LPFpd-~SFDlV~ss~vL  397 (480)
                      ++|+|||+|...  ..+...+..+++++++  ..+.......   ..   +........  .+++.+ .+||++ +....
T Consensus        52 ~ld~~~g~g~~~~~~~~~~~~~~~~~~d~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~~  128 (257)
T COG0500          52 VLDIGCGTGRLALLARLGGRGAYVVGVDLS--PEMLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLV-ISLLV  128 (257)
T ss_pred             eEEecCCcCHHHHHHHhCCCCceEEEEeCC--HHHHHHHHhhhhhcCCCceEEEEeccccCCCCCCCCCceeEE-eeeee
Confidence            999999999954  3333333466665543  2222221111   11   233444434  388888 599999 66666


Q ss_pred             cCccChhcHHHHHHHHHhcccCCcEEEEeec
Q 046488          398 DGWIDFVLLDFILYDWDRVLRPGGLLWIDSF  428 (480)
Q Consensus       398 ~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~f  428 (480)
                      .++..   ....+.++.|+|+|+|.+++...
T Consensus       129 ~~~~~---~~~~~~~~~~~l~~~g~~~~~~~  156 (257)
T COG0500         129 LHLLP---PAKALRELLRVLKPGGRLVLSDL  156 (257)
T ss_pred             hhcCC---HHHHHHHHHHhcCCCcEEEEEec
Confidence            66555   25699999999999999988743

>PRK00811 spermidine synthase; Provisional

Probab=98.21  E-value=1.2e-05  Score=81.02  Aligned_cols=117  Identities=17%  Similarity=0.114  Sum_probs=69.7

Q ss_pred             CCCeEEEECCCCcHHHHHHhhC-CC-EEEEEecCCChhHHHHHHHh------------CCCCeeeecccC-CCCCCCccc
Q 046488          325 EIRIGLDFSIGTGTFAARMREF-NV-TLVSAIINLGAPFNEMIALR------------GLVPLYITINQR-VPFFDNTLD  389 (480)
Q Consensus       325 ~iR~VLDVGCGtG~fAa~Lae~-gV-~Vv~vd~d~~~~~~~~iA~r------------glip~~~~~ae~-LPFpd~SFD  389 (480)
                      ..++|||+|||+|.++..+.++ ++ .++.++++.   ....++++            ..+.++.+++.. +...+++||
T Consensus        76 ~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~---~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yD  152 (283)
T PRK00811         76 NPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDE---RVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFD  152 (283)
T ss_pred             CCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCH---HHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCccc
Confidence            3568999999999999999886 44 566666652   22222222            112344455322 344578999


Q ss_pred             hheecccccCccChhc--HHHHHHHHHhcccCCcEEEEee--ccCChhhHHHHHHHHHHc
Q 046488          390 LIHTTRFLDGWIDFVL--LDFILYDWDRVLRPGGLLWIDS--FFCAKEDMNDYLEVFKML  445 (480)
Q Consensus       390 lV~ss~vL~h~~d~~~--l~~~L~EI~RVLKPGG~fiI~~--f~~~~edL~~~~~~l~~l  445 (480)
                      +|++... .++.....  -..++.++.|+|+|||.+++..  .....+.+..+...++..
T Consensus       153 vIi~D~~-dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~~~~~~~~~~~~~i~~tl~~~  211 (283)
T PRK00811        153 VIIVDST-DPVGPAEGLFTKEFYENCKRALKEDGIFVAQSGSPFYQADEIKDMHRKLKEV  211 (283)
T ss_pred             EEEECCC-CCCCchhhhhHHHHHHHHHHhcCCCcEEEEeCCCcccCHHHHHHHHHHHHHH
Confidence            9998543 22322111  1457899999999999988742  111223344444455554

>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2

Probab=98.20  E-value=2.9e-06  Score=82.46  Aligned_cols=98  Identities=26%  Similarity=0.284  Sum_probs=59.5

Q ss_pred             HHhcCCCCCCCCeEEEECCCCcHHHHHHhhC-C--CEEEEEecCC--ChhHHHHHHHhCC--CCeeeecc-cCCCCCCCc
Q 046488          316 PEVLDIKPGEIRIGLDFSIGTGTFAARMREF-N--VTLVSAIINL--GAPFNEMIALRGL--VPLYITIN-QRVPFFDNT  387 (480)
Q Consensus       316 ~~vL~l~~g~iR~VLDVGCGtG~fAa~Lae~-g--V~Vv~vd~d~--~~~~~~~iA~rgl--ip~~~~~a-e~LPFpd~S  387 (480)
                      -+.|.+++|.  +|||||||+|.+++.|+.. |  -.|++++.+.  ...+...++..+.  +.+.+++. ..+| ....
T Consensus        65 l~~L~l~pg~--~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g~~-~~ap  141 (209)
T PF01135_consen   65 LEALDLKPGD--RVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSEGWP-EEAP  141 (209)
T ss_dssp             HHHTTC-TT---EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGTTG-GG-S
T ss_pred             HHHHhcCCCC--EEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhhccc-cCCC
Confidence            3567788886  8999999999999999875 3  2467777542  1112222333333  33445553 2233 3567


Q ss_pred             cchheecccccCccChhcHHHHHHHHHhcccCCcEEEE
Q 046488          388 LDLIHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWI  425 (480)
Q Consensus       388 FDlV~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI  425 (480)
                      ||.|++..+....         -.++.+-||+||++++
T Consensus       142 fD~I~v~~a~~~i---------p~~l~~qL~~gGrLV~  170 (209)
T PF01135_consen  142 FDRIIVTAAVPEI---------PEALLEQLKPGGRLVA  170 (209)
T ss_dssp             EEEEEESSBBSS-----------HHHHHTEEEEEEEEE
T ss_pred             cCEEEEeeccchH---------HHHHHHhcCCCcEEEE
Confidence            9999998776432         2456777999999887

1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....

>KOG1271 consensus Methyltransferases [General function prediction only]

Probab=98.20  E-value=4.6e-06  Score=80.08  Aligned_cols=122  Identities=20%  Similarity=0.202  Sum_probs=78.9

Q ss_pred             CeEEEECCCCcHHHHHHhhCCCEE--EEEecCCChh-HHHHHHHhCCCC----eeeecccCCCCCCCccchheecccccC
Q 046488          327 RIGLDFSIGTGTFAARMREFNVTL--VSAIINLGAP-FNEMIALRGLVP----LYITINQRVPFFDNTLDLIHTTRFLDG  399 (480)
Q Consensus       327 R~VLDVGCGtG~fAa~Lae~gV~V--v~vd~d~~~~-~~~~iA~rglip----~~~~~ae~LPFpd~SFDlV~ss~vL~h  399 (480)
                      .+|||+|||.|.+...|++.|...  ++++.+..+. ....+|++...+    +.+.+...-.|..+.||+|+--..+.-
T Consensus        69 ~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~~~~~qfdlvlDKGT~DA  148 (227)
T KOG1271|consen   69 DRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPDFLSGQFDLVLDKGTLDA  148 (227)
T ss_pred             cceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCcccccceeEEeecCceee
Confidence            379999999999999999986543  5555443222 233566666544    344443333788899999985433322


Q ss_pred             -----ccChhcHHHHHHHHHhcccCCcEEEEeeccCChhhHHHHHHHHHHcCceeeE
Q 046488          400 -----WIDFVLLDFILYDWDRVLRPGGLLWIDSFFCAKEDMNDYLEVFKMLKYKKHK  451 (480)
Q Consensus       400 -----~~d~~~l~~~L~EI~RVLKPGG~fiI~~f~~~~edL~~~~~~l~~lGfkkl~  451 (480)
                           -.....+..++.-+.+.|+|||.|+|..-.-+.   +++.+.++..||..++
T Consensus       149 isLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN~T~---dELv~~f~~~~f~~~~  202 (227)
T KOG1271|consen  149 ISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCNFTK---DELVEEFENFNFEYLS  202 (227)
T ss_pred             eecCCCCcccceeeehhhHhhccCCCcEEEEEecCccH---HHHHHHHhcCCeEEEE
Confidence                 212222345888999999999999997533333   3455677776766543

>PRK04457 spermidine synthase; Provisional

Probab=98.20  E-value=1.9e-05  Score=78.96  Aligned_cols=118  Identities=17%  Similarity=0.245  Sum_probs=70.5

Q ss_pred             CCeEEEECCCCcHHHHHHhhC--CCEEEEEecCCChhHHHHHHHhC--------CCCeeeeccc-CCCCCCCccchheec
Q 046488          326 IRIGLDFSIGTGTFAARMREF--NVTLVSAIINLGAPFNEMIALRG--------LVPLYITINQ-RVPFFDNTLDLIHTT  394 (480)
Q Consensus       326 iR~VLDVGCGtG~fAa~Lae~--gV~Vv~vd~d~~~~~~~~iA~rg--------lip~~~~~ae-~LPFpd~SFDlV~ss  394 (480)
                      .++|||||||+|.++..++++  +..+++++++   +....+|++.        .+.++++++. -+.-.+++||+|++.
T Consensus        67 ~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEid---p~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D  143 (262)
T PRK04457         67 PQHILQIGLGGGSLAKFIYTYLPDTRQTAVEIN---PQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVD  143 (262)
T ss_pred             CCEEEEECCCHhHHHHHHHHhCCCCeEEEEECC---HHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEe
Confidence            468999999999999988875  4567777765   3333343331        1233445432 233334689999974


Q ss_pred             cccc--CccChhcHHHHHHHHHhcccCCcEEEEeeccCChhhHHHHHHHHHHcCcee
Q 046488          395 RFLD--GWIDFVLLDFILYDWDRVLRPGGLLWIDSFFCAKEDMNDYLEVFKMLKYKK  449 (480)
Q Consensus       395 ~vL~--h~~d~~~l~~~L~EI~RVLKPGG~fiI~~f~~~~edL~~~~~~l~~lGfkk  449 (480)
                      . +.  ..+.......++.++.++|+|||.+++..|... .....+...++.. |..
T Consensus       144 ~-~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~~~~~-~~~~~~l~~l~~~-F~~  197 (262)
T PRK04457        144 G-FDGEGIIDALCTQPFFDDCRNALSSDGIFVVNLWSRD-KRYDRYLERLESS-FEG  197 (262)
T ss_pred             C-CCCCCCccccCcHHHHHHHHHhcCCCcEEEEEcCCCc-hhHHHHHHHHHHh-cCC
Confidence            2 21  111111114699999999999999988544332 2334444444443 543

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=98.19  E-value=8.2e-06  Score=88.75  Aligned_cols=119  Identities=14%  Similarity=0.124  Sum_probs=70.7

Q ss_pred             CeEEEECCCCcHHHHHHhhC--CCEEEEEecCCCh--hHHHHHHHhCC---CCeeeec-ccCCCCCCCccchheecc---
Q 046488          327 RIGLDFSIGTGTFAARMREF--NVTLVSAIINLGA--PFNEMIALRGL---VPLYITI-NQRVPFFDNTLDLIHTTR---  395 (480)
Q Consensus       327 R~VLDVGCGtG~fAa~Lae~--gV~Vv~vd~d~~~--~~~~~iA~rgl---ip~~~~~-ae~LPFpd~SFDlV~ss~---  395 (480)
                      .+|||+|||+|.++..++..  +..+++++.+..+  .+...+...+.   +.+..++ .+  ++++++||+|+|+-   
T Consensus       140 ~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~--~~~~~~fDlIvsNPPYi  217 (506)
T PRK01544        140 LNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFE--NIEKQKFDFIVSNPPYI  217 (506)
T ss_pred             CEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhh--hCcCCCccEEEECCCCC
Confidence            47999999999999988764  5678888765311  11112222222   2233333 22  23467899999841   


Q ss_pred             -----------cccCcc------Ch---hcHHHHHHHHHhcccCCcEEEEeeccCChhhHHHHHHHHHHcCceee
Q 046488          396 -----------FLDGWI------DF---VLLDFILYDWDRVLRPGGLLWIDSFFCAKEDMNDYLEVFKMLKYKKH  450 (480)
Q Consensus       396 -----------vL~h~~------d~---~~l~~~L~EI~RVLKPGG~fiI~~f~~~~edL~~~~~~l~~lGfkkl  450 (480)
                                 +..+.+      ..   .....++.++.++|+|||.+++..-+.   +.+.+.+++...||..+
T Consensus       218 ~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEig~~---q~~~v~~~~~~~g~~~~  289 (506)
T PRK01544        218 SHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEIGFK---QEEAVTQIFLDHGYNIE  289 (506)
T ss_pred             CchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEECCc---hHHHHHHHHHhcCCCce
Confidence                       111111      00   112447788999999999998853222   23445667777788654

>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes

Probab=98.19  E-value=3.8e-06  Score=86.92  Aligned_cols=123  Identities=17%  Similarity=0.167  Sum_probs=69.8

Q ss_pred             cccccccccccCCCCCCchhhhhHHHhcC-CC-CCCCCeEEEECCCCcHHHHHHhhCCC-EEEEEecCCC--hhHHHHHH
Q 046488          292 HEMPRWIKNVDIDPITNLTADFLIPEVLD-IK-PGEIRIGLDFSIGTGTFAARMREFNV-TLVSAIINLG--APFNEMIA  366 (480)
Q Consensus       292 k~~q~W~~~~gf~~~~~~~ad~~I~~vL~-l~-~g~iR~VLDVGCGtG~fAa~Lae~gV-~Vv~vd~d~~--~~~~~~iA  366 (480)
                      +...+|+...            +|...++ +. .....+|||+|||-|+-..-....++ .++++|++..  .++.++..
T Consensus        39 R~fNNwvKs~------------LI~~~~~~~~~~~~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~  106 (331)
T PF03291_consen   39 RNFNNWVKSV------------LIQKYAKKVKQNRPGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYK  106 (331)
T ss_dssp             HHHHHHHHHH------------HHHHHCHCCCCTTTT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHH
T ss_pred             HHHhHHHHHH------------HHHHHHHhhhccCCCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHH
Confidence            5666777653            4544433 11 11345899999998886555555554 5678886531  11222220


Q ss_pred             H--hCC--------CCe--eeec------ccCCCCCCCccchheecccccCc-cChhcHHHHHHHHHhcccCCcEEEEe
Q 046488          367 L--RGL--------VPL--YITI------NQRVPFFDNTLDLIHTTRFLDGW-IDFVLLDFILYDWDRVLRPGGLLWID  426 (480)
Q Consensus       367 ~--rgl--------ip~--~~~~------ae~LPFpd~SFDlV~ss~vL~h~-~d~~~l~~~L~EI~RVLKPGG~fiI~  426 (480)
                      .  ++.        ..+  +.++      .+.++.....||+|-|.+++|+. ........+|..+.+.|||||+|+.+
T Consensus       107 ~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT  185 (331)
T PF03291_consen  107 QLKKRNNSKQYRFDFIAEFIAADCFSESLREKLPPRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGT  185 (331)
T ss_dssp             HHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSSSTTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred             HhccccccccccccchhheeccccccchhhhhccccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEE
Confidence            0  000        111  2222      12344445699999999999875 34445567999999999999999875

The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.

>COG2521 Predicted archaeal methyltransferase [General function prediction only]

Probab=98.19  E-value=5.8e-06  Score=81.96  Aligned_cols=122  Identities=16%  Similarity=0.145  Sum_probs=76.4

Q ss_pred             CCeEEEECCCCcHHHHHHhhCCC-EEEEEecCCC-------hhHHHHHHHhCCCCeeeecccC--CCCCCCccchheec-
Q 046488          326 IRIGLDFSIGTGTFAARMREFNV-TLVSAIINLG-------APFNEMIALRGLVPLYITINQR--VPFFDNTLDLIHTT-  394 (480)
Q Consensus       326 iR~VLDVGCGtG~fAa~Lae~gV-~Vv~vd~d~~-------~~~~~~iA~rglip~~~~~ae~--LPFpd~SFDlV~ss-  394 (480)
                      ..+|||...|-|.+|+...++|. .|+++.-|..       .|-+....+ ..+.++++++.+  -.|+|.|||+|+-. 
T Consensus       135 G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNPwSr~l~~-~~i~iilGD~~e~V~~~~D~sfDaIiHDP  213 (287)
T COG2521         135 GERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNPWSRELFE-IAIKIILGDAYEVVKDFDDESFDAIIHDP  213 (287)
T ss_pred             CCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccCCCCccccc-cccEEecccHHHHHhcCCccccceEeeCC
Confidence            34899999999999999999987 7877764421       011111111 124556666433  25789999998731 


Q ss_pred             --ccccCccChhcHHHHHHHHHhcccCCcEEEEee-----ccCChhhHHHHHHHHHHcCceeeE
Q 046488          395 --RFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDS-----FFCAKEDMNDYLEVFKMLKYKKHK  451 (480)
Q Consensus       395 --~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~-----f~~~~edL~~~~~~l~~lGfkkl~  451 (480)
                        +.+.. .-..  +.+..|++|||||||.++--.     -++..+-.....+.+++.||..+.
T Consensus       214 PRfS~Ag-eLYs--eefY~El~RiLkrgGrlFHYvG~Pg~ryrG~d~~~gVa~RLr~vGF~~v~  274 (287)
T COG2521         214 PRFSLAG-ELYS--EEFYRELYRILKRGGRLFHYVGNPGKRYRGLDLPKGVAERLRRVGFEVVK  274 (287)
T ss_pred             Cccchhh-hHhH--HHHHHHHHHHcCcCCcEEEEeCCCCcccccCChhHHHHHHHHhcCceeee
Confidence              11110 0011  458999999999999976421     111112234578899999998664

>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=98.17  E-value=7.2e-06  Score=79.96  Aligned_cols=97  Identities=26%  Similarity=0.240  Sum_probs=66.3

Q ss_pred             HHHhcCCCCCCCCeEEEECCCCcHHHHHHhhCCCEEEEEecCCChhHHHHHHHh-----CC--CCeeeec-ccCCCCCCC
Q 046488          315 IPEVLDIKPGEIRIGLDFSIGTGTFAARMREFNVTLVSAIINLGAPFNEMIALR-----GL--VPLYITI-NQRVPFFDN  386 (480)
Q Consensus       315 I~~vL~l~~g~iR~VLDVGCGtG~fAa~Lae~gV~Vv~vd~d~~~~~~~~iA~r-----gl--ip~~~~~-ae~LPFpd~  386 (480)
                      +-++|.+++++  +||+||||+|..++.|++..-.|+++..+   +.+...|++     |.  +.+.+++ ..-+| +..
T Consensus        64 m~~~L~~~~g~--~VLEIGtGsGY~aAvla~l~~~V~siEr~---~~L~~~A~~~L~~lg~~nV~v~~gDG~~G~~-~~a  137 (209)
T COG2518          64 MLQLLELKPGD--RVLEIGTGSGYQAAVLARLVGRVVSIERI---EELAEQARRNLETLGYENVTVRHGDGSKGWP-EEA  137 (209)
T ss_pred             HHHHhCCCCCC--eEEEECCCchHHHHHHHHHhCeEEEEEEc---HHHHHHHHHHHHHcCCCceEEEECCcccCCC-CCC
Confidence            34677788875  89999999999999999985588888755   233333332     33  3334444 33344 347


Q ss_pred             ccchheecccccCccChhcHHHHHHHHHhcccCCcEEEEe
Q 046488          387 TLDLIHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWID  426 (480)
Q Consensus       387 SFDlV~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~  426 (480)
                      -||.|+.+.+...+++         -+.+-|||||++++-
T Consensus       138 PyD~I~Vtaaa~~vP~---------~Ll~QL~~gGrlv~P  168 (209)
T COG2518         138 PYDRIIVTAAAPEVPE---------ALLDQLKPGGRLVIP  168 (209)
T ss_pred             CcCEEEEeeccCCCCH---------HHHHhcccCCEEEEE
Confidence            7999998887755443         245679999998873

>PRK03612 spermidine synthase; Provisional

Probab=98.14  E-value=1.3e-05  Score=87.54  Aligned_cols=118  Identities=14%  Similarity=0.036  Sum_probs=74.5

Q ss_pred             CCeEEEECCCCcHHHHHHhhCC--CEEEEEecCCChhHHHHHHHhC--------------CCCeeeecccC-CCCCCCcc
Q 046488          326 IRIGLDFSIGTGTFAARMREFN--VTLVSAIINLGAPFNEMIALRG--------------LVPLYITINQR-VPFFDNTL  388 (480)
Q Consensus       326 iR~VLDVGCGtG~fAa~Lae~g--V~Vv~vd~d~~~~~~~~iA~rg--------------lip~~~~~ae~-LPFpd~SF  388 (480)
                      .++|||+|||+|..+..+.+++  ..++.+++|   +...+.+++.              .+.++.+++.. +...+++|
T Consensus       298 ~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid---~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~f  374 (521)
T PRK03612        298 PRRVLVLGGGDGLALREVLKYPDVEQVTLVDLD---PAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKF  374 (521)
T ss_pred             CCeEEEEcCCccHHHHHHHhCCCcCeEEEEECC---HHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCC
Confidence            4689999999999999988774  367777765   3333344331              12334444332 33345799


Q ss_pred             chheecccccCccC-hh--cHHHHHHHHHhcccCCcEEEEee--ccCChhhHHHHHHHHHHcCc
Q 046488          389 DLIHTTRFLDGWID-FV--LLDFILYDWDRVLRPGGLLWIDS--FFCAKEDMNDYLEVFKMLKY  447 (480)
Q Consensus       389 DlV~ss~vL~h~~d-~~--~l~~~L~EI~RVLKPGG~fiI~~--f~~~~edL~~~~~~l~~lGf  447 (480)
                      |+|++...- ++.. ..  .-..+++++.|.|||||.+++..  .....+....+.+.+++.||
T Consensus       375 DvIi~D~~~-~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~i~~~l~~~gf  437 (521)
T PRK03612        375 DVIIVDLPD-PSNPALGKLYSVEFYRLLKRRLAPDGLLVVQSTSPYFAPKAFWSIEATLEAAGL  437 (521)
T ss_pred             CEEEEeCCC-CCCcchhccchHHHHHHHHHhcCCCeEEEEecCCcccchHHHHHHHHHHHHcCC
Confidence            999986432 2211 00  01247899999999999988853  11223344567788888888

>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]

Probab=98.13  E-value=2e-05  Score=78.85  Aligned_cols=124  Identities=19%  Similarity=0.196  Sum_probs=83.1

Q ss_pred             hHHHhcCCCCCCCCeEEEECCCCcHHHHHHhhC-C--CEEEEEecCC--ChhHHHHHHHhCCCC---eeeecccCCCCCC
Q 046488          314 LIPEVLDIKPGEIRIGLDFSIGTGTFAARMREF-N--VTLVSAIINL--GAPFNEMIALRGLVP---LYITINQRVPFFD  385 (480)
Q Consensus       314 ~I~~vL~l~~g~iR~VLDVGCGtG~fAa~Lae~-g--V~Vv~vd~d~--~~~~~~~iA~rglip---~~~~~ae~LPFpd  385 (480)
                      ||-..+.+.+|.  +|||.|.|+|.++++|+.. |  -.+++++...  ..-+.+.+..-+...   ...++....-+++
T Consensus        85 ~I~~~~gi~pg~--rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~~~  162 (256)
T COG2519          85 YIVARLGISPGS--RVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGIDEE  162 (256)
T ss_pred             HHHHHcCCCCCC--EEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEecccccccccc
Confidence            666778888886  8999999999999999953 2  2566666542  112222333223322   2334443333444


Q ss_pred             CccchheecccccCccChhcHHHHHHHHHhcccCCcEEEEeeccCChhhHHHHHHHHHHcCceee
Q 046488          386 NTLDLIHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDSFFCAKEDMNDYLEVFKMLKYKKH  450 (480)
Q Consensus       386 ~SFDlV~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~f~~~~edL~~~~~~l~~lGfkkl  450 (480)
                       .||+|+.     .++++.   .++..++.+|||||.+++  |...-+++++..+.++..||..+
T Consensus       163 -~vDav~L-----Dmp~PW---~~le~~~~~Lkpgg~~~~--y~P~veQv~kt~~~l~~~g~~~i  216 (256)
T COG2519         163 -DVDAVFL-----DLPDPW---NVLEHVSDALKPGGVVVV--YSPTVEQVEKTVEALRERGFVDI  216 (256)
T ss_pred             -ccCEEEE-----cCCChH---HHHHHHHHHhCCCcEEEE--EcCCHHHHHHHHHHHHhcCccch
Confidence             8998884     345663   599999999999999877  44556677777777888898755

>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]

Probab=98.10  E-value=4.3e-06  Score=86.00  Aligned_cols=101  Identities=13%  Similarity=0.082  Sum_probs=65.6

Q ss_pred             CCeEEEECCCCcHHHHHHhhCCC-EEEEEecCCCh--hHHHH----HHHhC--CCC--eeeec------ccCCCCCCCcc
Q 046488          326 IRIGLDFSIGTGTFAARMREFNV-TLVSAIINLGA--PFNEM----IALRG--LVP--LYITI------NQRVPFFDNTL  388 (480)
Q Consensus       326 iR~VLDVGCGtG~fAa~Lae~gV-~Vv~vd~d~~~--~~~~~----iA~rg--lip--~~~~~------ae~LPFpd~SF  388 (480)
                      ...+||+|||-|+-....-..|+ ..+++|+....  .++.+    .....  .++  ++.++      .+.+++.|.+|
T Consensus       118 ~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~dp~f  197 (389)
T KOG1975|consen  118 GDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKDPRF  197 (389)
T ss_pred             ccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCCCCc
Confidence            34799999999987666555554 35666653211  11111    11111  112  23333      45688888889


Q ss_pred             chheecccccC-ccChhcHHHHHHHHHhcccCCcEEEEe
Q 046488          389 DLIHTTRFLDG-WIDFVLLDFILYDWDRVLRPGGLLWID  426 (480)
Q Consensus       389 DlV~ss~vL~h-~~d~~~l~~~L~EI~RVLKPGG~fiI~  426 (480)
                      |+|-|.+++|. |...+....+|..+.+.|||||+||-+
T Consensus       198 DivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgT  236 (389)
T KOG1975|consen  198 DIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGT  236 (389)
T ss_pred             ceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEe
Confidence            99999999875 344445567999999999999998764

>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed

Probab=98.06  E-value=6.2e-05  Score=80.34  Aligned_cols=114  Identities=16%  Similarity=0.170  Sum_probs=69.7

Q ss_pred             CeEEEECCCCcHHHHHHhhCCCEEEEEecCCChhHHH----HHHHhCC--CCeeeecc----cCCCCCCCccchheeccc
Q 046488          327 RIGLDFSIGTGTFAARMREFNVTLVSAIINLGAPFNE----MIALRGL--VPLYITIN----QRVPFFDNTLDLIHTTRF  396 (480)
Q Consensus       327 R~VLDVGCGtG~fAa~Lae~gV~Vv~vd~d~~~~~~~----~iA~rgl--ip~~~~~a----e~LPFpd~SFDlV~ss~v  396 (480)
                      .+|||+|||+|.++..|++.+..+++++.+.  .+..    .+...+.  +.++.+++    ..+++.+++||+|++.--
T Consensus       299 ~~VLDlgcGtG~~sl~la~~~~~V~gvD~s~--~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~~~~~~~fD~Vi~dPP  376 (443)
T PRK13168        299 DRVLDLFCGLGNFTLPLARQAAEVVGVEGVE--AMVERARENARRNGLDNVTFYHANLEEDFTDQPWALGGFDKVLLDPP  376 (443)
T ss_pred             CEEEEEeccCCHHHHHHHHhCCEEEEEeCCH--HHHHHHHHHHHHcCCCceEEEEeChHHhhhhhhhhcCCCCEEEECcC
Confidence            4899999999999999998887888888663  2322    1222222  33444443    234567789999986321


Q ss_pred             ccCccChhcHHHHHHHHHhcccCCcEEEEeeccCChhhHHHHHHHHHHcCceeeEE
Q 046488          397 LDGWIDFVLLDFILYDWDRVLRPGGLLWIDSFFCAKEDMNDYLEVFKMLKYKKHKW  452 (480)
Q Consensus       397 L~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~f~~~~edL~~~~~~l~~lGfkkl~W  452 (480)
                            ...+...+..+.+ ++|++.++++   |....+.+=...+...||+-.+-
T Consensus       377 ------r~g~~~~~~~l~~-~~~~~ivyvS---Cnp~tlaRDl~~L~~~gY~l~~i  422 (443)
T PRK13168        377 ------RAGAAEVMQALAK-LGPKRIVYVS---CNPATLARDAGVLVEAGYRLKRA  422 (443)
T ss_pred             ------CcChHHHHHHHHh-cCCCeEEEEE---eChHHhhccHHHHhhCCcEEEEE
Confidence                  1111335555555 6999998885   44444433233444568875443

>TIGR00417 speE spermidine synthase

Probab=98.04  E-value=0.00011  Score=73.51  Aligned_cols=98  Identities=13%  Similarity=-0.033  Sum_probs=58.3

Q ss_pred             CCCeEEEECCCCcHHHHHHhhCC--CEEEEEecCCChhHHHHHHHhC-----------CCCeeeecc-cCCCCCCCccch
Q 046488          325 EIRIGLDFSIGTGTFAARMREFN--VTLVSAIINLGAPFNEMIALRG-----------LVPLYITIN-QRVPFFDNTLDL  390 (480)
Q Consensus       325 ~iR~VLDVGCGtG~fAa~Lae~g--V~Vv~vd~d~~~~~~~~iA~rg-----------lip~~~~~a-e~LPFpd~SFDl  390 (480)
                      ..++|||||||+|.++..+.++.  ..++.++++.   .....+.+.           .+.+..+++ +-+...+++||+
T Consensus        72 ~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~---~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDv  148 (270)
T TIGR00417        72 NPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDE---KVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDV  148 (270)
T ss_pred             CCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCH---HHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccE
Confidence            34589999999999998887763  3455555542   222222221           122223332 112223579999


Q ss_pred             heecccccCccChhc--HHHHHHHHHhcccCCcEEEEe
Q 046488          391 IHTTRFLDGWIDFVL--LDFILYDWDRVLRPGGLLWID  426 (480)
Q Consensus       391 V~ss~vL~h~~d~~~--l~~~L~EI~RVLKPGG~fiI~  426 (480)
                      |++.... ++.....  ...++..+.+.|+|||.+++.
T Consensus       149 Ii~D~~~-~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~  185 (270)
T TIGR00417       149 IIVDSTD-PVGPAETLFTKEFYELLKKALNEDGIFVAQ  185 (270)
T ss_pred             EEEeCCC-CCCcccchhHHHHHHHHHHHhCCCcEEEEc
Confidence            9985432 2221110  145889999999999998875

the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.

>KOG1331 consensus Predicted methyltransferase [General function prediction only]

Probab=98.02  E-value=3.4e-06  Score=85.40  Aligned_cols=98  Identities=18%  Similarity=0.149  Sum_probs=71.5

Q ss_pred             CeEEEECCCCcHHHHHHhhCCCEEEEEecCCChhHHHHHHHhCCC-CeeeecccCCCCCCCccchheecccccCccChhc
Q 046488          327 RIGLDFSIGTGTFAARMREFNVTLVSAIINLGAPFNEMIALRGLV-PLYITINQRVPFFDNTLDLIHTTRFLDGWIDFVL  405 (480)
Q Consensus       327 R~VLDVGCGtG~fAa~Lae~gV~Vv~vd~d~~~~~~~~iA~rgli-p~~~~~ae~LPFpd~SFDlV~ss~vL~h~~d~~~  405 (480)
                      ..++|+|||.|.....-  -...+++.|+..   -+...+++.+. ....+++-.+|+.+.+||.+++..++||+.....
T Consensus        47 sv~~d~gCGngky~~~~--p~~~~ig~D~c~---~l~~~ak~~~~~~~~~ad~l~~p~~~~s~d~~lsiavihhlsT~~R  121 (293)
T KOG1331|consen   47 SVGLDVGCGNGKYLGVN--PLCLIIGCDLCT---GLLGGAKRSGGDNVCRADALKLPFREESFDAALSIAVIHHLSTRER  121 (293)
T ss_pred             ceeeecccCCcccCcCC--Ccceeeecchhh---hhccccccCCCceeehhhhhcCCCCCCccccchhhhhhhhhhhHHH
Confidence            47999999999743221  123445554431   22234444444 4666778899999999999999999999987666


Q ss_pred             HHHHHHHHHhcccCCcEEEEeecc
Q 046488          406 LDFILYDWDRVLRPGGLLWIDSFF  429 (480)
Q Consensus       406 l~~~L~EI~RVLKPGG~fiI~~f~  429 (480)
                      ...++.|+.|+|||||...|..|-
T Consensus       122 R~~~l~e~~r~lrpgg~~lvyvwa  145 (293)
T KOG1331|consen  122 RERALEELLRVLRPGGNALVYVWA  145 (293)
T ss_pred             HHHHHHHHHHHhcCCCceEEEEeh
Confidence            678999999999999997776554

>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes

Probab=98.02  E-value=4e-05  Score=74.92  Aligned_cols=130  Identities=18%  Similarity=0.147  Sum_probs=80.0

Q ss_pred             cCCCCCCCCeEEEECCCCcHHHHHHhhCCCEEEEEecCCChhHHHHHHHhCCC------------------CeeeecccC
Q 046488          319 LDIKPGEIRIGLDFSIGTGTFAARMREFNVTLVSAIINLGAPFNEMIALRGLV------------------PLYITINQR  380 (480)
Q Consensus       319 L~l~~g~iR~VLDVGCGtG~fAa~Lae~gV~Vv~vd~d~~~~~~~~iA~rgli------------------p~~~~~ae~  380 (480)
                      +...++  .+||+.|||.|.-+..|+++|..|++++++.  .+.+++.++...                  .++.++.-.
T Consensus        33 l~~~~~--~rvLvPgCG~g~D~~~La~~G~~VvGvDls~--~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~  108 (218)
T PF05724_consen   33 LALKPG--GRVLVPGCGKGYDMLWLAEQGHDVVGVDLSP--TAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFE  108 (218)
T ss_dssp             HTTSTS--EEEEETTTTTSCHHHHHHHTTEEEEEEES-H--HHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTT
T ss_pred             cCCCCC--CeEEEeCCCChHHHHHHHHCCCeEEEEecCH--HHHHHHHHHhccCCCcccccceeeecCCceEEEEccccc
Confidence            344443  4899999999999999999999999998752  344444333321                  122333333


Q ss_pred             CCCCC-CccchheecccccCccChhcHHHHHHHHHhcccCCcEEEEee--ccCChh-----h--HHHHHHHHHHcCceee
Q 046488          381 VPFFD-NTLDLIHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDS--FFCAKE-----D--MNDYLEVFKMLKYKKH  450 (480)
Q Consensus       381 LPFpd-~SFDlV~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~--f~~~~e-----d--L~~~~~~l~~lGfkkl  450 (480)
                      ++-.+ +.||+|+=..+|+-++ ++....+..-+.++|||||.+++..  +-....     .  .+++.+++. -+|+..
T Consensus       109 l~~~~~g~fD~iyDr~~l~Alp-p~~R~~Ya~~l~~ll~p~g~~lLi~l~~~~~~~~GPPf~v~~~ev~~l~~-~~f~i~  186 (218)
T PF05724_consen  109 LPPEDVGKFDLIYDRTFLCALP-PEMRERYAQQLASLLKPGGRGLLITLEYPQGEMEGPPFSVTEEEVRELFG-PGFEIE  186 (218)
T ss_dssp             GGGSCHHSEEEEEECSSTTTS--GGGHHHHHHHHHHCEEEEEEEEEEEEES-CSCSSSSS----HHHHHHHHT-TTEEEE
T ss_pred             CChhhcCCceEEEEecccccCC-HHHHHHHHHHHHHHhCCCCcEEEEEEEcCCcCCCCcCCCCCHHHHHHHhc-CCcEEE
Confidence            43322 4799999766776554 3445889999999999999944432  211110     1  245666666 466654


Q ss_pred             EEEE
Q 046488          451 KWVV  454 (480)
Q Consensus       451 ~W~~  454 (480)
                      ....
T Consensus       187 ~l~~  190 (218)
T PF05724_consen  187 ELEE  190 (218)
T ss_dssp             EEEE
T ss_pred             EEec
Confidence            4443

Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.

>PRK01581 speE spermidine synthase; Validated

Probab=98.01  E-value=4.7e-05  Score=79.98  Aligned_cols=123  Identities=10%  Similarity=-0.046  Sum_probs=72.8

Q ss_pred             CCCeEEEECCCCcHHHHHHhhCC--CEEEEEecCCChhHHHHHHHh---------C-----CCCeeeecccC-CCCCCCc
Q 046488          325 EIRIGLDFSIGTGTFAARMREFN--VTLVSAIINLGAPFNEMIALR---------G-----LVPLYITINQR-VPFFDNT  387 (480)
Q Consensus       325 ~iR~VLDVGCGtG~fAa~Lae~g--V~Vv~vd~d~~~~~~~~iA~r---------g-----lip~~~~~ae~-LPFpd~S  387 (480)
                      ..++||++|||+|..+..+.+++  ..++.++++   +...++|++         +     .+.++++++.. ++-.++.
T Consensus       150 ~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEID---peVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~  226 (374)
T PRK01581        150 DPKRVLILGGGDGLALREVLKYETVLHVDLVDLD---GSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSL  226 (374)
T ss_pred             CCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCC---HHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCC
Confidence            34689999999999988888763  356666665   333444442         1     12233444332 3445678


Q ss_pred             cchheecccccCccC---hhcHHHHHHHHHhcccCCcEEEEeecc--CChhhHHHHHHHHHHcCceeeE
Q 046488          388 LDLIHTTRFLDGWID---FVLLDFILYDWDRVLRPGGLLWIDSFF--CAKEDMNDYLEVFKMLKYKKHK  451 (480)
Q Consensus       388 FDlV~ss~vL~h~~d---~~~l~~~L~EI~RVLKPGG~fiI~~f~--~~~edL~~~~~~l~~lGfkkl~  451 (480)
                      ||+|++... .....   .-.-..++..+.+.|+|||.|++..-.  ........+...++..|+....
T Consensus       227 YDVIIvDl~-DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~sp~~~~~~~~~i~~tL~~af~~v~~  294 (374)
T PRK01581        227 YDVIIIDFP-DPATELLSTLYTSELFARIATFLTEDGAFVCQSNSPADAPLVYWSIGNTIEHAGLTVKS  294 (374)
T ss_pred             ccEEEEcCC-CccccchhhhhHHHHHHHHHHhcCCCcEEEEecCChhhhHHHHHHHHHHHHHhCCceEE
Confidence            999998632 11110   000134889999999999998775211  0111123355677777776543

>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2

Probab=98.00  E-value=2.7e-05  Score=74.72  Aligned_cols=98  Identities=22%  Similarity=0.281  Sum_probs=62.1

Q ss_pred             eEEEECCCCcHHHHHHhhC--CCEEEEEecCCC--hhHHHHHHHhCCCCee--eecccC-C--CCCCCccchheeccccc
Q 046488          328 IGLDFSIGTGTFAARMREF--NVTLVSAIINLG--APFNEMIALRGLVPLY--ITINQR-V--PFFDNTLDLIHTTRFLD  398 (480)
Q Consensus       328 ~VLDVGCGtG~fAa~Lae~--gV~Vv~vd~d~~--~~~~~~iA~rglip~~--~~~ae~-L--PFpd~SFDlV~ss~vL~  398 (480)
                      .+||||||.|.|...+|..  +...+|+++...  ..+..++..+++-++.  .+++.. +  -++++++|.|+..+- .
T Consensus        20 l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~FP-D   98 (195)
T PF02390_consen   20 LILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYINFP-D   98 (195)
T ss_dssp             EEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEES---
T ss_pred             eEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEeCC-C
Confidence            8999999999999999886  677888886531  1233344555554433  333333 2  256799999997553 3


Q ss_pred             CccCh------hcHHHHHHHHHhcccCCcEEEEe
Q 046488          399 GWIDF------VLLDFILYDWDRVLRPGGLLWID  426 (480)
Q Consensus       399 h~~d~------~~l~~~L~EI~RVLKPGG~fiI~  426 (480)
                      +|+..      -.-..++.++.|+|||||.+.+.
T Consensus        99 PWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~  132 (195)
T PF02390_consen   99 PWPKKRHHKRRLVNPEFLELLARVLKPGGELYFA  132 (195)
T ss_dssp             ---SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEE
T ss_pred             CCcccchhhhhcCCchHHHHHHHHcCCCCEEEEE
Confidence            45421      01145899999999999998773

1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....

>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]

Probab=97.99  E-value=9.2e-05  Score=74.91  Aligned_cols=117  Identities=19%  Similarity=0.222  Sum_probs=70.3

Q ss_pred             eEEEECCCCcHHHHHHhhCC--CEEEEEecCCChh--HHHHHHHhCCCCeeeecccCCCCCCCccchheecc--ccc---
Q 046488          328 IGLDFSIGTGTFAARMREFN--VTLVSAIINLGAP--FNEMIALRGLVPLYITINQRVPFFDNTLDLIHTTR--FLD---  398 (480)
Q Consensus       328 ~VLDVGCGtG~fAa~Lae~g--V~Vv~vd~d~~~~--~~~~iA~rglip~~~~~ae~LPFpd~SFDlV~ss~--vL~---  398 (480)
                      +|||+|||+|..|..++...  ..|+++|++..+-  +...+...+......-...-+.--.+.||+|+|+=  .=.   
T Consensus       113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dlf~~~~~~fDlIVsNPPYip~~~~  192 (280)
T COG2890         113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGLVRVLVVQSDLFEPLRGKFDLIVSNPPYIPAEDP  192 (280)
T ss_pred             cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCCccEEEEeeecccccCCceeEEEeCCCCCCCccc
Confidence            79999999999999999874  3788888764222  11222233332222111111222233899999851  100   


Q ss_pred             --------Ccc------C---hhcHHHHHHHHHhcccCCcEEEEeeccCChhhHHHHHHHHHHcCc
Q 046488          399 --------GWI------D---FVLLDFILYDWDRVLRPGGLLWIDSFFCAKEDMNDYLEVFKMLKY  447 (480)
Q Consensus       399 --------h~~------d---~~~l~~~L~EI~RVLKPGG~fiI~~f~~~~edL~~~~~~l~~lGf  447 (480)
                              +-+      .   ......++.++.+.|+|||.+++-.-+.   +.+.+.+++...|+
T Consensus       193 ~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g~~---q~~~v~~~~~~~~~  255 (280)
T COG2890         193 ELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIGLT---QGEAVKALFEDTGF  255 (280)
T ss_pred             ccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEECCC---cHHHHHHHHHhcCC
Confidence                    000      0   1234568899999999999988854222   23456678888885

>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []

Probab=97.98  E-value=4.8e-05  Score=75.95  Aligned_cols=125  Identities=18%  Similarity=0.208  Sum_probs=79.4

Q ss_pred             hHHHhcCCCCCCCCeEEEECCCCcHHHHHHhhC---CCEEEEEecCCC--hhHHHHHHHhCC---CCeeeecccCCCCC-
Q 046488          314 LIPEVLDIKPGEIRIGLDFSIGTGTFAARMREF---NVTLVSAIINLG--APFNEMIALRGL---VPLYITINQRVPFF-  384 (480)
Q Consensus       314 ~I~~vL~l~~g~iR~VLDVGCGtG~fAa~Lae~---gV~Vv~vd~d~~--~~~~~~iA~rgl---ip~~~~~ae~LPFp-  384 (480)
                      +|-..+++.||.  +||+.|.|+|+++..|+..   .-.+.+++....  ..+...+..-|+   +.+.+.+...-.|. 
T Consensus        31 ~I~~~l~i~pG~--~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~  108 (247)
T PF08704_consen   31 YILMRLDIRPGS--RVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFDE  108 (247)
T ss_dssp             HHHHHTT--TT---EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--ST
T ss_pred             HHHHHcCCCCCC--EEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceecccccc
Confidence            555678899986  8999999999999999863   236777775421  122233333343   23444443222232 


Q ss_pred             --CCccchheecccccCccChhcHHHHHHHHHhcc-cCCcEEEEeeccCChhhHHHHHHHHHHcCceee
Q 046488          385 --DNTLDLIHTTRFLDGWIDFVLLDFILYDWDRVL-RPGGLLWIDSFFCAKEDMNDYLEVFKMLKYKKH  450 (480)
Q Consensus       385 --d~SFDlV~ss~vL~h~~d~~~l~~~L~EI~RVL-KPGG~fiI~~f~~~~edL~~~~~~l~~lGfkkl  450 (480)
                        ++.||.|+.     .++++.   .++..+.++| ||||++++  |...-+++.+..+.++..||..+
T Consensus       109 ~~~~~~DavfL-----Dlp~Pw---~~i~~~~~~L~~~gG~i~~--fsP~ieQv~~~~~~L~~~gf~~i  167 (247)
T PF08704_consen  109 ELESDFDAVFL-----DLPDPW---EAIPHAKRALKKPGGRICC--FSPCIEQVQKTVEALREHGFTDI  167 (247)
T ss_dssp             T-TTSEEEEEE-----ESSSGG---GGHHHHHHHE-EEEEEEEE--EESSHHHHHHHHHHHHHTTEEEE
T ss_pred             cccCcccEEEE-----eCCCHH---HHHHHHHHHHhcCCceEEE--ECCCHHHHHHHHHHHHHCCCeee
Confidence              478998874     345554   3899999999 99998776  45556777888888899999754

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.

>TIGR00478 tly hemolysin TlyA family protein

Probab=97.92  E-value=5.2e-05  Score=74.81  Aligned_cols=87  Identities=18%  Similarity=0.073  Sum_probs=51.8

Q ss_pred             CCeEEEECCCCcHHHHHHhhCCC-EEEEEecCCChhHHHH-HHHhCCCCee-eeccc-----CCCCCCCccchheecccc
Q 046488          326 IRIGLDFSIGTGTFAARMREFNV-TLVSAIINLGAPFNEM-IALRGLVPLY-ITINQ-----RVPFFDNTLDLIHTTRFL  397 (480)
Q Consensus       326 iR~VLDVGCGtG~fAa~Lae~gV-~Vv~vd~d~~~~~~~~-iA~rglip~~-~~~ae-----~LPFpd~SFDlV~ss~vL  397 (480)
                      ..+|||+|||||.|+..++++|+ .++++|++.  .++.. ......+..+ ....+     .++..-..||+++++.. 
T Consensus        76 ~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~--~~l~~~l~~~~~v~~~~~~ni~~~~~~~~~~d~~~~DvsfiS~~-  152 (228)
T TIGR00478        76 NKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGY--NQLAEKLRQDERVKVLERTNIRYVTPADIFPDFATFDVSFISLI-  152 (228)
T ss_pred             CCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCH--HHHHHHHhcCCCeeEeecCCcccCCHhHcCCCceeeeEEEeehH-
Confidence            35899999999999999999875 577777542  23322 2111111111 11122     22222235666665443 


Q ss_pred             cCccChhcHHHHHHHHHhcccCCcEEEEe
Q 046488          398 DGWIDFVLLDFILYDWDRVLRPGGLLWID  426 (480)
Q Consensus       398 ~h~~d~~~l~~~L~EI~RVLKPGG~fiI~  426 (480)
                                ..|..+.+.|+| |.+++.
T Consensus       153 ----------~~l~~i~~~l~~-~~~~~L  170 (228)
T TIGR00478       153 ----------SILPELDLLLNP-NDLTLL  170 (228)
T ss_pred             ----------hHHHHHHHHhCc-CeEEEE
Confidence                      258899999999 887664

Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).

>PLN02781 Probable caffeoyl-CoA O-methyltransferase

Probab=97.92  E-value=2.9e-05  Score=76.28  Aligned_cols=106  Identities=12%  Similarity=0.069  Sum_probs=64.3

Q ss_pred             hHHHhcCCCCCCCCeEEEECCCCcHHHHHHhhC---CCEEEEEecCCCh--hHHHHHHHhCC---CCeeeecc-cCCC--
Q 046488          314 LIPEVLDIKPGEIRIGLDFSIGTGTFAARMREF---NVTLVSAIINLGA--PFNEMIALRGL---VPLYITIN-QRVP--  382 (480)
Q Consensus       314 ~I~~vL~l~~g~iR~VLDVGCGtG~fAa~Lae~---gV~Vv~vd~d~~~--~~~~~iA~rgl---ip~~~~~a-e~LP--  382 (480)
                      ++..++.+.+.  ++|||+|||+|..+..++..   +..+++++.+...  .+.+.+++.|.   +.+..+.+ +.|+  
T Consensus        59 ~L~~l~~~~~~--~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l  136 (234)
T PLN02781         59 FLSMLVKIMNA--KNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQL  136 (234)
T ss_pred             HHHHHHHHhCC--CEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHH
Confidence            33334444433  48999999999977766653   3477787766321  12223333343   33444442 2222  


Q ss_pred             ---CCCCccchheecccccCccChhcHHHHHHHHHhcccCCcEEEEee
Q 046488          383 ---FFDNTLDLIHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDS  427 (480)
Q Consensus       383 ---Fpd~SFDlV~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~  427 (480)
                         .++++||+|+....    . + ....++.++.+.|||||.+++++
T Consensus       137 ~~~~~~~~fD~VfiDa~----k-~-~y~~~~~~~~~ll~~GG~ii~dn  178 (234)
T PLN02781        137 LNNDPKPEFDFAFVDAD----K-P-NYVHFHEQLLKLVKVGGIIAFDN  178 (234)
T ss_pred             HhCCCCCCCCEEEECCC----H-H-HHHHHHHHHHHhcCCCeEEEEEc
Confidence               12578999986432    1 1 12468999999999999999875

>PRK10611 chemotaxis methyltransferase CheR; Provisional

Probab=97.91  E-value=2.5e-05  Score=79.54  Aligned_cols=97  Identities=15%  Similarity=0.124  Sum_probs=64.8

Q ss_pred             CeEEEECCCCcH----HHHHHhhC------CCEEEEEecCCChhHHHHHHHhCCCC------------------------
Q 046488          327 RIGLDFSIGTGT----FAARMREF------NVTLVSAIINLGAPFNEMIALRGLVP------------------------  372 (480)
Q Consensus       327 R~VLDVGCGtG~----fAa~Lae~------gV~Vv~vd~d~~~~~~~~iA~rglip------------------------  372 (480)
                      -+|+..||.||.    +|..+.+.      ++.++++|++.  .+ ...|++|..+                        
T Consensus       117 irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~--~a-L~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~  193 (287)
T PRK10611        117 YRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDT--EV-LEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHE  193 (287)
T ss_pred             EEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCH--HH-HHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCC
Confidence            479999999995    56666553      46788888763  22 2222322100                        


Q ss_pred             --------------eeeecccCCCCC-CCccchheecccccCccChhcHHHHHHHHHhcccCCcEEEEee
Q 046488          373 --------------LYITINQRVPFF-DNTLDLIHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDS  427 (480)
Q Consensus       373 --------------~~~~~ae~LPFp-d~SFDlV~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~  427 (480)
                                    +...+....|++ .+.||+|+|..+++|+.+... ..++..+++.|+|||+|++.+
T Consensus       194 ~~~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~-~~vl~~l~~~L~pgG~L~lG~  262 (287)
T PRK10611        194 GLVRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQ-ERILRRFVPLLKPDGLLFAGH  262 (287)
T ss_pred             ceEEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHH-HHHHHHHHHHhCCCcEEEEeC
Confidence                          111112222343 588999999999998865443 789999999999999988853

>PHA03412 putative methyltransferase; Provisional

Probab=97.91  E-value=4.2e-05  Score=76.11  Aligned_cols=92  Identities=14%  Similarity=0.113  Sum_probs=58.5

Q ss_pred             CeEEEECCCCcHHHHHHhhC-----CCEEEEEecCCChhHHHHHHHhCC--CCeeeecccCCCCCCCccchheecccccC
Q 046488          327 RIGLDFSIGTGTFAARMREF-----NVTLVSAIINLGAPFNEMIALRGL--VPLYITINQRVPFFDNTLDLIHTTRFLDG  399 (480)
Q Consensus       327 R~VLDVGCGtG~fAa~Lae~-----gV~Vv~vd~d~~~~~~~~iA~rgl--ip~~~~~ae~LPFpd~SFDlV~ss~vL~h  399 (480)
                      .+|||+|||+|.++..++++     ...+++++++   +....+|.+..  +.+..++....++ +++||+|+++==+..
T Consensus        51 grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID---~~Al~~Ar~n~~~~~~~~~D~~~~~~-~~~FDlIIsNPPY~~  126 (241)
T PHA03412         51 GSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELN---HTYYKLGKRIVPEATWINADALTTEF-DTLFDMAISNPPFGK  126 (241)
T ss_pred             CEEEEccChHHHHHHHHHHhcccCCCcEEEEEECC---HHHHHHHHhhccCCEEEEcchhcccc-cCCccEEEECCCCCC
Confidence            37999999999999988763     4577777776   33344444443  3445555555554 679999999622211


Q ss_pred             c--cC-------hhcHHHHHHHHHhcccCCcE
Q 046488          400 W--ID-------FVLLDFILYDWDRVLRPGGL  422 (480)
Q Consensus       400 ~--~d-------~~~l~~~L~EI~RVLKPGG~  422 (480)
                      .  .+       ......++..+.|.++||+.
T Consensus       127 ~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~  158 (241)
T PHA03412        127 IKTSDFKGKYTGAEFEYKVIERASQIARQGTF  158 (241)
T ss_pred             ccccccCCcccccHHHHHHHHHHHHHcCCCEE
Confidence            1  11       11124578888897777776

>KOG2899 consensus Predicted methyltransferase [General function prediction only]

Probab=97.90  E-value=5.5e-05  Score=75.49  Aligned_cols=98  Identities=18%  Similarity=0.285  Sum_probs=64.0

Q ss_pred             CCCeEEEECCCCcHHHHHHhhC-C-CEEEEEecCCChhHHHHHHHhCC---------CC---------------------
Q 046488          325 EIRIGLDFSIGTGTFAARMREF-N-VTLVSAIINLGAPFNEMIALRGL---------VP---------------------  372 (480)
Q Consensus       325 ~iR~VLDVGCGtG~fAa~Lae~-g-V~Vv~vd~d~~~~~~~~iA~rgl---------ip---------------------  372 (480)
                      ....+|||||-.|.+++.+++. + -.++++|+|   +.+.+.|.+..         +.                     
T Consensus        58 ~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID---~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~  134 (288)
T KOG2899|consen   58 EPKQALDIGCNSGFLTLSIAKDFGPRRILGVDID---PVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEAD  134 (288)
T ss_pred             CcceeEeccCCcchhHHHHHHhhccceeeEeecc---HHHHHHHHHhccccccccccccCCCcccccccccccccccccc
Confidence            3457999999999999999986 3 346777776   34444433211         00                     


Q ss_pred             -----------------eeeecccCCCCCCCccchheeccc----ccCccChhcHHHHHHHHHhcccCCcEEEEe
Q 046488          373 -----------------LYITINQRVPFFDNTLDLIHTTRF----LDGWIDFVLLDFILYDWDRVLRPGGLLWID  426 (480)
Q Consensus       373 -----------------~~~~~ae~LPFpd~SFDlV~ss~v----L~h~~d~~~l~~~L~EI~RVLKPGG~fiI~  426 (480)
                                       .++...+-|-+..+.||+|.|..+    --+|.|.. +..+|..+.|.|.|||+|++-
T Consensus       135 ~a~t~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD~G-L~~ff~kis~ll~pgGiLvvE  208 (288)
T KOG2899|consen  135 RAFTTDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNWGDDG-LRRFFRKISSLLHPGGILVVE  208 (288)
T ss_pred             ccccccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEecccccHH-HHHHHHHHHHhhCcCcEEEEc
Confidence                             000001122345678999998532    22455554 578999999999999999985

>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]

Probab=97.89  E-value=1.1e-05  Score=84.48  Aligned_cols=102  Identities=24%  Similarity=0.290  Sum_probs=73.0

Q ss_pred             CCCCCCCeEEEECCCCcHHHHHHhhC-CCEEEEEecCCChhHHH--HHHH---hCCCCeeeecccCCCCCCCccchheec
Q 046488          321 IKPGEIRIGLDFSIGTGTFAARMREF-NVTLVSAIINLGAPFNE--MIAL---RGLVPLYITINQRVPFFDNTLDLIHTT  394 (480)
Q Consensus       321 l~~g~iR~VLDVGCGtG~fAa~Lae~-gV~Vv~vd~d~~~~~~~--~iA~---rglip~~~~~ae~LPFpd~SFDlV~ss  394 (480)
                      +.++.  .++|+|||.|....+++.. +..+++++.+.-.....  ..+.   ...-..+..+....||+|++||.+.+.
T Consensus       108 ~~~~~--~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn~fd~v~~l  185 (364)
T KOG1269|consen  108 CFPGS--KVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDNTFDGVRFL  185 (364)
T ss_pred             Ccccc--cccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCccccCcEEEE
Confidence            55554  6899999999999888875 34555655432111111  1111   111223556788889999999999999


Q ss_pred             ccccCccChhcHHHHHHHHHhcccCCcEEEEee
Q 046488          395 RFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDS  427 (480)
Q Consensus       395 ~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~  427 (480)
                      .+..|.++..   .++.|++||++|||+++.-.
T Consensus       186 d~~~~~~~~~---~~y~Ei~rv~kpGG~~i~~e  215 (364)
T KOG1269|consen  186 EVVCHAPDLE---KVYAEIYRVLKPGGLFIVKE  215 (364)
T ss_pred             eecccCCcHH---HHHHHHhcccCCCceEEeHH
Confidence            9999988874   69999999999999988753

>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]

Probab=97.84  E-value=2.6e-05  Score=80.92  Aligned_cols=99  Identities=19%  Similarity=0.206  Sum_probs=66.3

Q ss_pred             CCeEEEECCCCcHHHHHHhhCCC-EEEEEecCCChhHHHHHHHhCCC----CeeeecccCCCCCCCccchheecccccCc
Q 046488          326 IRIGLDFSIGTGTFAARMREFNV-TLVSAIINLGAPFNEMIALRGLV----PLYITINQRVPFFDNTLDLIHTTRFLDGW  400 (480)
Q Consensus       326 iR~VLDVGCGtG~fAa~Lae~gV-~Vv~vd~d~~~~~~~~iA~rgli----p~~~~~ae~LPFpd~SFDlV~ss~vL~h~  400 (480)
                      .++|||||||||.++...++.|. .|++++.+..+....++......    ....+..+.+-.|-...|+|++-+.=...
T Consensus        61 dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia~~a~~iv~~N~~~~ii~vi~gkvEdi~LP~eKVDiIvSEWMGy~L  140 (346)
T KOG1499|consen   61 DKTVLDVGCGTGILSMFAAKAGARKVYAVEASSIADFARKIVKDNGLEDVITVIKGKVEDIELPVEKVDIIVSEWMGYFL  140 (346)
T ss_pred             CCEEEEcCCCccHHHHHHHHhCcceEEEEechHHHHHHHHHHHhcCccceEEEeecceEEEecCccceeEEeehhhhHHH
Confidence            46899999999999998888864 56777655444444455544433    33345566655558999999985432211


Q ss_pred             cChhcHHHHHHHHHhcccCCcEEE
Q 046488          401 IDFVLLDFILYDWDRVLRPGGLLW  424 (480)
Q Consensus       401 ~d~~~l~~~L~EI~RVLKPGG~fi  424 (480)
                      --...+..+|..=+|-|+|||.++
T Consensus       141 l~EsMldsVl~ARdkwL~~~G~i~  164 (346)
T KOG1499|consen  141 LYESMLDSVLYARDKWLKEGGLIY  164 (346)
T ss_pred             HHhhhhhhhhhhhhhccCCCceEc
Confidence            112234567888899999999876

>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA

Probab=97.84  E-value=0.00015  Score=76.78  Aligned_cols=116  Identities=16%  Similarity=0.231  Sum_probs=70.2

Q ss_pred             CeEEEECCCCcHHHHHHhhCCCEEEEEecCCChh--HHHHHHHhCC--CCeeeeccc----CCCCCCCccchheeccccc
Q 046488          327 RIGLDFSIGTGTFAARMREFNVTLVSAIINLGAP--FNEMIALRGL--VPLYITINQ----RVPFFDNTLDLIHTTRFLD  398 (480)
Q Consensus       327 R~VLDVGCGtG~fAa~Lae~gV~Vv~vd~d~~~~--~~~~iA~rgl--ip~~~~~ae----~LPFpd~SFDlV~ss~vL~  398 (480)
                      .+|||+|||+|.++..|++....+++++.+..+-  +...+...+.  +.++.++++    .+++.+++||+|+..---.
T Consensus       294 ~~vLDl~cG~G~~sl~la~~~~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~~~~~~D~vi~dPPr~  373 (431)
T TIGR00479       294 ELVVDAYCGVGTFTLPLAKQAKSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQPWAGQIPDVLLLDPPRK  373 (431)
T ss_pred             CEEEEcCCCcCHHHHHHHHhCCEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHhcCCCCCEEEECcCCC
Confidence            4899999999999999998877788888763211  1112222232  334445533    2345567899998532111


Q ss_pred             CccChhcHHHHHHHHHhcccCCcEEEEeeccCChhhHHHHHHHHHHcCceeeE
Q 046488          399 GWIDFVLLDFILYDWDRVLRPGGLLWIDSFFCAKEDMNDYLEVFKMLKYKKHK  451 (480)
Q Consensus       399 h~~d~~~l~~~L~EI~RVLKPGG~fiI~~f~~~~edL~~~~~~l~~lGfkkl~  451 (480)
                      .. .    ..++.++.+ |+|++.++++   |....+.+-...+...||+-..
T Consensus       374 G~-~----~~~l~~l~~-l~~~~ivyvs---c~p~tlard~~~l~~~gy~~~~  417 (431)
T TIGR00479       374 GC-A----AEVLRTIIE-LKPERIVYVS---CNPATLARDLEFLCKEGYGITW  417 (431)
T ss_pred             CC-C----HHHHHHHHh-cCCCEEEEEc---CCHHHHHHHHHHHHHCCeeEEE
Confidence            10 1    346666655 8999987774   5555554444556667876433

This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.

>PLN02366 spermidine synthase

Probab=97.83  E-value=0.00019  Score=73.78  Aligned_cols=115  Identities=17%  Similarity=0.106  Sum_probs=66.3

Q ss_pred             CCeEEEECCCCcHHHHHHhhC-CC-EEEEEecCCChhHHHHHHHhC-----------CCCeeeecccCC--CCCCCccch
Q 046488          326 IRIGLDFSIGTGTFAARMREF-NV-TLVSAIINLGAPFNEMIALRG-----------LVPLYITINQRV--PFFDNTLDL  390 (480)
Q Consensus       326 iR~VLDVGCGtG~fAa~Lae~-gV-~Vv~vd~d~~~~~~~~iA~rg-----------lip~~~~~ae~L--PFpd~SFDl  390 (480)
                      .++||+||||.|..+..++++ ++ .++.+++|   +....++++.           .+.++.+++...  ..+++.||+
T Consensus        92 pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD---~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDv  168 (308)
T PLN02366         92 PKKVLVVGGGDGGVLREIARHSSVEQIDICEID---KMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDA  168 (308)
T ss_pred             CCeEEEEcCCccHHHHHHHhCCCCCeEEEEECC---HHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCE
Confidence            568999999999999999887 33 34455554   2222222221           233444442211  123678999


Q ss_pred             heecccccCccChhc--HHHHHHHHHhcccCCcEEEEe---eccCChhhHHHHHHHHHHc
Q 046488          391 IHTTRFLDGWIDFVL--LDFILYDWDRVLRPGGLLWID---SFFCAKEDMNDYLEVFKML  445 (480)
Q Consensus       391 V~ss~vL~h~~d~~~--l~~~L~EI~RVLKPGG~fiI~---~f~~~~edL~~~~~~l~~l  445 (480)
                      |++... .++.....  -..++..+.++|+|||.+++.   .|.. .+....+...++..
T Consensus       169 Ii~D~~-dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~~s~~~~-~~~~~~i~~tl~~~  226 (308)
T PLN02366        169 IIVDSS-DPVGPAQELFEKPFFESVARALRPGGVVCTQAESMWLH-MDLIEDLIAICRET  226 (308)
T ss_pred             EEEcCC-CCCCchhhhhHHHHHHHHHHhcCCCcEEEECcCCcccc-hHHHHHHHHHHHHH
Confidence            997432 22221110  135899999999999998764   2332 33344444444444

>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein

Probab=97.76  E-value=0.00012  Score=71.82  Aligned_cols=117  Identities=16%  Similarity=0.129  Sum_probs=78.5

Q ss_pred             CeEEEECCCCcHHHHHHhhCCCEEEEEecCCChhHHHHHHHhCCCCeeeecccC--CC-CCCCccchheecccccCccCh
Q 046488          327 RIGLDFSIGTGTFAARMREFNVTLVSAIINLGAPFNEMIALRGLVPLYITINQR--VP-FFDNTLDLIHTTRFLDGWIDF  403 (480)
Q Consensus       327 R~VLDVGCGtG~fAa~Lae~gV~Vv~vd~d~~~~~~~~iA~rglip~~~~~ae~--LP-Fpd~SFDlV~ss~vL~h~~d~  403 (480)
                      -++|||||=+...+..-.. -+.|+.+|++..++.           +...+.-.  +| -+++.||+|.++.+|..++++
T Consensus        53 lrlLEVGals~~N~~s~~~-~fdvt~IDLns~~~~-----------I~qqDFm~rplp~~~~e~FdvIs~SLVLNfVP~p  120 (219)
T PF11968_consen   53 LRLLEVGALSTDNACSTSG-WFDVTRIDLNSQHPG-----------ILQQDFMERPLPKNESEKFDVISLSLVLNFVPDP  120 (219)
T ss_pred             ceEEeecccCCCCcccccC-ceeeEEeecCCCCCC-----------ceeeccccCCCCCCcccceeEEEEEEEEeeCCCH
Confidence            4799999986655443322 234666666542222           22233223  44 247899999999999999988


Q ss_pred             hcHHHHHHHHHhcccCCcE-----EEEe-eccCCh----hhHHHHHHHHHHcCceeeEEEEe
Q 046488          404 VLLDFILYDWDRVLRPGGL-----LWID-SFFCAK----EDMNDYLEVFKMLKYKKHKWVVV  455 (480)
Q Consensus       404 ~~l~~~L~EI~RVLKPGG~-----fiI~-~f~~~~----edL~~~~~~l~~lGfkkl~W~~~  455 (480)
                      ......+.-+++.|||+|.     ++|. .--|..    -+.+.+..+++.+||..++.+..
T Consensus       121 ~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~Cv~NSRy~~~~~l~~im~~LGf~~~~~~~~  182 (219)
T PF11968_consen  121 KQRGEMLRRAHKFLKPPGLSLFPSLFLVLPLPCVTNSRYMTEERLREIMESLGFTRVKYKKS  182 (219)
T ss_pred             HHHHHHHHHHHHHhCCCCccCcceEEEEeCchHhhcccccCHHHHHHHHHhCCcEEEEEEec
Confidence            8778899999999999999     6554 222211    12356889999999987765443

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=97.74  E-value=6.1e-05  Score=85.03  Aligned_cols=120  Identities=20%  Similarity=0.079  Sum_probs=68.9

Q ss_pred             CeEEEECCCCcHHHHHHhhCCC-EEEEEecCCChh--HHHHHHHhCC----CCeeeecc-cCCCCCCCccchheecc---
Q 046488          327 RIGLDFSIGTGTFAARMREFNV-TLVSAIINLGAP--FNEMIALRGL----VPLYITIN-QRVPFFDNTLDLIHTTR---  395 (480)
Q Consensus       327 R~VLDVGCGtG~fAa~Lae~gV-~Vv~vd~d~~~~--~~~~iA~rgl----ip~~~~~a-e~LPFpd~SFDlV~ss~---  395 (480)
                      ++|||+|||||.++..++..|. .|++++.+..+-  +...++..+.    +.++.+++ +-+.-..++||+|++.=   
T Consensus       540 ~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilDPP~f  619 (702)
T PRK11783        540 KDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFIDPPTF  619 (702)
T ss_pred             CeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEECCCCC
Confidence            5899999999999999998876 488877653211  1222333332    22333442 21211257899999841   


Q ss_pred             cc-----cCccChhcHHHHHHHHHhcccCCcEEEEeeccCChhhHHHHHHHHHHcCcee
Q 046488          396 FL-----DGWIDFVLLDFILYDWDRVLRPGGLLWIDSFFCAKEDMNDYLEVFKMLKYKK  449 (480)
Q Consensus       396 vL-----~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~f~~~~edL~~~~~~l~~lGfkk  449 (480)
                      .-     ..+........++..+.++|+|||.+++..-...   +..-...+...|++-
T Consensus       620 ~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~~~---~~~~~~~~~~~g~~~  675 (702)
T PRK11783        620 SNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNKRG---FKMDEEGLAKLGLKA  675 (702)
T ss_pred             CCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCCcc---CChhHHHHHhCCCeE
Confidence            10     0010011124578889999999999988532111   111245666667653

>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases

Probab=97.71  E-value=0.00017  Score=67.68  Aligned_cols=102  Identities=15%  Similarity=0.108  Sum_probs=58.1

Q ss_pred             CCeEEEECCCCcHHHHHHhhC--CCEEEEEecCCChhHHHHHHHhCC------CCe-eeecccCC--C-CCCCccchhee
Q 046488          326 IRIGLDFSIGTGTFAARMREF--NVTLVSAIINLGAPFNEMIALRGL------VPL-YITINQRV--P-FFDNTLDLIHT  393 (480)
Q Consensus       326 iR~VLDVGCGtG~fAa~Lae~--gV~Vv~vd~d~~~~~~~~iA~rgl------ip~-~~~~ae~L--P-Fpd~SFDlV~s  393 (480)
                      .++||++|||+|..+..++..  ...++.+|.+..-+....-.+...      +.+ .+.|.+.+  . ...+.||+|++
T Consensus        46 ~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D~Ila  125 (173)
T PF10294_consen   46 GKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNEVLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFDVILA  125 (173)
T ss_dssp             TSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S-HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBSEEEE
T ss_pred             CceEEEECCccchhHHHHHhccCCceEEEeccchhhHHHHHHHHhccccccccccCcEEEecCcccccccccccCCEEEE
Confidence            458999999999999888887  567777776542122222122211      111 12443322  1 24568999999


Q ss_pred             cccccCccChhcHHHHHHHHHhcccCCcEEEEeeccC
Q 046488          394 TRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDSFFC  430 (480)
Q Consensus       394 s~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~f~~  430 (480)
                      +.++..-   ...+.++.=+.+.|+|+|.+++..-.+
T Consensus       126 sDv~Y~~---~~~~~L~~tl~~ll~~~~~vl~~~~~R  159 (173)
T PF10294_consen  126 SDVLYDE---ELFEPLVRTLKRLLKPNGKVLLAYKRR  159 (173)
T ss_dssp             ES--S-G---GGHHHHHHHHHHHBTT-TTEEEEEE-S
T ss_pred             ecccchH---HHHHHHHHHHHHHhCCCCEEEEEeCEe
Confidence            9998753   334678999999999999977764333

They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.

>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed

Probab=97.69  E-value=0.00023  Score=72.63  Aligned_cols=94  Identities=19%  Similarity=0.127  Sum_probs=58.1

Q ss_pred             CeEEEECCCCcHHHHHHhhCCCEEEEEecCCChh--HHHHHHHhCC--CCeeeecccCCCC-CCCccchheecccccCcc
Q 046488          327 RIGLDFSIGTGTFAARMREFNVTLVSAIINLGAP--FNEMIALRGL--VPLYITINQRVPF-FDNTLDLIHTTRFLDGWI  401 (480)
Q Consensus       327 R~VLDVGCGtG~fAa~Lae~gV~Vv~vd~d~~~~--~~~~iA~rgl--ip~~~~~ae~LPF-pd~SFDlV~ss~vL~h~~  401 (480)
                      .+|||+|||+|.++..+++++..+++++.+..+-  +...+...+.  +.++.++++.+.. .++.||+|++.      +
T Consensus       175 ~~VLDl~cG~G~~sl~la~~~~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~~~~~~D~Vv~d------P  248 (315)
T PRK03522        175 RSMWDLFCGVGGFGLHCATPGMQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATAQGEVPDLVLVN------P  248 (315)
T ss_pred             CEEEEccCCCCHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHhcCCCCeEEEEC------C
Confidence            4899999999999999999988888888763211  1112222232  3344555544432 34679999864      1


Q ss_pred             ChhcHHHHHHHHHhcccCCcEEEEe
Q 046488          402 DFVLLDFILYDWDRVLRPGGLLWID  426 (480)
Q Consensus       402 d~~~l~~~L~EI~RVLKPGG~fiI~  426 (480)
                      ++..+...+.++..-++|++.++++
T Consensus       249 Pr~G~~~~~~~~l~~~~~~~ivyvs  273 (315)
T PRK03522        249 PRRGIGKELCDYLSQMAPRFILYSS  273 (315)
T ss_pred             CCCCccHHHHHHHHHcCCCeEEEEE
Confidence            2211122344555557899888875

>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=97.68  E-value=0.00013  Score=70.37  Aligned_cols=99  Identities=20%  Similarity=0.165  Sum_probs=58.0

Q ss_pred             CCCCeEEEECCCCcH----HHHHHhh-----C--CCEEEEEecCCChhHHHHHHHhCC--------CC------------
Q 046488          324 GEIRIGLDFSIGTGT----FAARMRE-----F--NVTLVSAIINLGAPFNEMIALRGL--------VP------------  372 (480)
Q Consensus       324 g~iR~VLDVGCGtG~----fAa~Lae-----~--gV~Vv~vd~d~~~~~~~~iA~rgl--------ip------------  372 (480)
                      +..-+|+.+||+||.    +|..|.+     .  .+.++++|++.   .....|++|.        ++            
T Consensus        30 ~~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~---~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~  106 (196)
T PF01739_consen   30 GRPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISP---SALEKARAGIYPERSLRGLPPAYLRRYFTERD  106 (196)
T ss_dssp             -S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-H---HHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-
T ss_pred             CCCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCH---HHHHHHHhCCCCHHHHhhhHHHHHHHhccccC
Confidence            344579999999995    6666666     1  36788888763   2233344331        11            


Q ss_pred             ---------------eeeecccCCCCCCCccchheecccccCccChhcHHHHHHHHHhcccCCcEEEEe
Q 046488          373 ---------------LYITINQRVPFFDNTLDLIHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWID  426 (480)
Q Consensus       373 ---------------~~~~~ae~LPFpd~SFDlV~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~  426 (480)
                                     +.....-..+.+.+.||+|+|..+|..+.+... ..++..+++.|+|||+|++.
T Consensus       107 ~~~~~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~-~~vl~~l~~~L~pgG~L~lG  174 (196)
T PF01739_consen  107 GGGYRVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQ-QRVLRRLHRSLKPGGYLFLG  174 (196)
T ss_dssp             CCCTTE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHHH-HHHHHHHGGGEEEEEEEEE-
T ss_pred             CCceeEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHHH-HHHHHHHHHHcCCCCEEEEe
Confidence                           001111223446789999999999998865543 78999999999999999985

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.

>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]

Probab=97.67  E-value=0.00013  Score=72.01  Aligned_cols=99  Identities=26%  Similarity=0.287  Sum_probs=64.3

Q ss_pred             CeEEEECCCCcHHHHHHhhCC--CEEEEEecCCC--hhHHHHHHHhCCCCeee--eccc---CCCCCCCccchheecccc
Q 046488          327 RIGLDFSIGTGTFAARMREFN--VTLVSAIINLG--APFNEMIALRGLVPLYI--TINQ---RVPFFDNTLDLIHTTRFL  397 (480)
Q Consensus       327 R~VLDVGCGtG~fAa~Lae~g--V~Vv~vd~d~~--~~~~~~iA~rglip~~~--~~ae---~LPFpd~SFDlV~ss~vL  397 (480)
                      ..+||||||.|.+...+|.++  ...+|+.+...  ..+...+.+.++-++.+  .++.   ..-++++|.|-|+..+- 
T Consensus        50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~FP-  128 (227)
T COG0220          50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYINFP-  128 (227)
T ss_pred             cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEECC-
Confidence            379999999999999999874  45677775431  12333333334314432  3322   22346679999997654 


Q ss_pred             cCccCh------hcHHHHHHHHHhcccCCcEEEEe
Q 046488          398 DGWIDF------VLLDFILYDWDRVLRPGGLLWID  426 (480)
Q Consensus       398 ~h~~d~------~~l~~~L~EI~RVLKPGG~fiI~  426 (480)
                      .+|+..      -.-..++.++.|+|||||.|.+.
T Consensus       129 DPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~a  163 (227)
T COG0220         129 DPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFA  163 (227)
T ss_pred             CCCCCccccccccCCHHHHHHHHHHccCCCEEEEE
Confidence            456421      11145899999999999999884

>PLN02672 methionine S-methyltransferase

Probab=97.60  E-value=0.00029  Score=82.72  Aligned_cols=126  Identities=15%  Similarity=0.084  Sum_probs=73.8

Q ss_pred             CeEEEECCCCcHHHHHHhhC--CCEEEEEecCCChh--HHHHHHHhC------------------CCCeeeec-ccCCCC
Q 046488          327 RIGLDFSIGTGTFAARMREF--NVTLVSAIINLGAP--FNEMIALRG------------------LVPLYITI-NQRVPF  383 (480)
Q Consensus       327 R~VLDVGCGtG~fAa~Lae~--gV~Vv~vd~d~~~~--~~~~iA~rg------------------lip~~~~~-ae~LPF  383 (480)
                      .+|||+|||+|..+..++++  +..+++++++..+-  +...+...+                  .+.++.++ .+.++-
T Consensus       120 ~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~~  199 (1082)
T PLN02672        120 KTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCRD  199 (1082)
T ss_pred             CEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhccc
Confidence            47999999999999999875  35778887663221  111222211                  12334444 322221


Q ss_pred             CCCccchheeccc---------cc-----C-----------cc-------Ch---hcHHHHHHHHHhcccCCcEEEEeec
Q 046488          384 FDNTLDLIHTTRF---------LD-----G-----------WI-------DF---VLLDFILYDWDRVLRPGGLLWIDSF  428 (480)
Q Consensus       384 pd~SFDlV~ss~v---------L~-----h-----------~~-------d~---~~l~~~L~EI~RVLKPGG~fiI~~f  428 (480)
                      ....||+|+++=-         +.     |           ..       +.   .....++.+..++|||||++++-.-
T Consensus       200 ~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~lEiG  279 (1082)
T PLN02672        200 NNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIFNMG  279 (1082)
T ss_pred             cCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEEEEC
Confidence            1236999998611         10     0           00       00   0124578899999999999887533


Q ss_pred             cCChhhHHHHH-HHHHHcCceee-EEEEe
Q 046488          429 FCAKEDMNDYL-EVFKMLKYKKH-KWVVV  455 (480)
Q Consensus       429 ~~~~edL~~~~-~~l~~lGfkkl-~W~~~  455 (480)
                      ....   +.+. +++++.||+.. .|...
T Consensus       280 ~~q~---~~v~~~l~~~~gf~~~~~~~~~  305 (1082)
T PLN02672        280 GRPG---QAVCERLFERRGFRITKLWQTK  305 (1082)
T ss_pred             ccHH---HHHHHHHHHHCCCCeeEEeeeh
Confidence            2222   3455 57888899875 57764

>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]

Probab=97.58  E-value=0.0004  Score=72.44  Aligned_cols=120  Identities=23%  Similarity=0.174  Sum_probs=80.3

Q ss_pred             CCCCCCCCeEEEECCCCcHHHHHHhhCCCEEEEEecCCChhHHHHHHHhCC----C---Ceeee-cccCCCCCCCccchh
Q 046488          320 DIKPGEIRIGLDFSIGTGTFAARMREFNVTLVSAIINLGAPFNEMIALRGL----V---PLYIT-INQRVPFFDNTLDLI  391 (480)
Q Consensus       320 ~l~~g~iR~VLDVGCGtG~fAa~Lae~gV~Vv~vd~d~~~~~~~~iA~rgl----i---p~~~~-~ae~LPFpd~SFDlV  391 (480)
                      .+++|+  .|||==||||++.....-.|+.++|.|++.   .+..-++.++    +   ..+.. ++..+||++++||.|
T Consensus       194 ~v~~G~--~vlDPFcGTGgiLiEagl~G~~viG~Did~---~mv~gak~Nl~~y~i~~~~~~~~~Da~~lpl~~~~vdaI  268 (347)
T COG1041         194 RVKRGE--LVLDPFCGTGGILIEAGLMGARVIGSDIDE---RMVRGAKINLEYYGIEDYPVLKVLDATNLPLRDNSVDAI  268 (347)
T ss_pred             ccccCC--EeecCcCCccHHHHhhhhcCceEeecchHH---HHHhhhhhhhhhhCcCceeEEEecccccCCCCCCccceE
Confidence            355665  899999999999999988899999998762   2222222221    1   22333 689999999999999


Q ss_pred             eecc--ccc---CccC-hhcHHHHHHHHHhcccCCcEEEEeeccCChhhHHHHHHHHHHcCceeeE
Q 046488          392 HTTR--FLD---GWID-FVLLDFILYDWDRVLRPGGLLWIDSFFCAKEDMNDYLEVFKMLKYKKHK  451 (480)
Q Consensus       392 ~ss~--vL~---h~~d-~~~l~~~L~EI~RVLKPGG~fiI~~f~~~~edL~~~~~~l~~lGfkkl~  451 (480)
                      .+.-  ...   .-.. ......+|.++.+|||+||++++......       .+.+..+||+-+.
T Consensus       269 atDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p~~~-------~~~~~~~~f~v~~  327 (347)
T COG1041         269 ATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAPRDP-------RHELEELGFKVLG  327 (347)
T ss_pred             EecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecCCcc-------hhhHhhcCceEEE
Confidence            9841  111   1111 23346799999999999999988544211       2345566787653

>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]

Probab=97.56  E-value=0.00015  Score=75.26  Aligned_cols=97  Identities=20%  Similarity=0.203  Sum_probs=68.2

Q ss_pred             CCCeEEEECCCCcHHHHHHhhC--CCEEEEEecCCChhHHHHHHHhCCCCeeeec-ccCCCCCCCccchheecccccCcc
Q 046488          325 EIRIGLDFSIGTGTFAARMREF--NVTLVSAIINLGAPFNEMIALRGLVPLYITI-NQRVPFFDNTLDLIHTTRFLDGWI  401 (480)
Q Consensus       325 ~iR~VLDVGCGtG~fAa~Lae~--gV~Vv~vd~d~~~~~~~~iA~rglip~~~~~-ae~LPFpd~SFDlV~ss~vL~h~~  401 (480)
                      .....+|+|.|+|..+..+..+  .+..+.+++...-.+...++ .| +..+.++ .+..|-.|    +|++-++|+||.
T Consensus       177 ~v~~avDvGgGiG~v~k~ll~~fp~ik~infdlp~v~~~a~~~~-~g-V~~v~gdmfq~~P~~d----aI~mkWiLhdwt  250 (342)
T KOG3178|consen  177 GVNVAVDVGGGIGRVLKNLLSKYPHIKGINFDLPFVLAAAPYLA-PG-VEHVAGDMFQDTPKGD----AIWMKWILHDWT  250 (342)
T ss_pred             cCceEEEcCCcHhHHHHHHHHhCCCCceeecCHHHHHhhhhhhc-CC-cceecccccccCCCcC----eEEEEeecccCC
Confidence            4578999999999999888876  45556655421111122222 22 4444444 55566544    999999999999


Q ss_pred             ChhcHHHHHHHHHhcccCCcEEEEeec
Q 046488          402 DFVLLDFILYDWDRVLRPGGLLWIDSF  428 (480)
Q Consensus       402 d~~~l~~~L~EI~RVLKPGG~fiI~~f  428 (480)
                      |.+. .++|+.++.-|+|||.+++.+-
T Consensus       251 Dedc-vkiLknC~~sL~~~GkIiv~E~  276 (342)
T KOG3178|consen  251 DEDC-VKILKNCKKSLPPGGKIIVVEN  276 (342)
T ss_pred             hHHH-HHHHHHHHHhCCCCCEEEEEec
Confidence            8753 7899999999999999988643

>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional

Probab=97.54  E-value=0.00028  Score=70.15  Aligned_cols=74  Identities=12%  Similarity=0.114  Sum_probs=50.2

Q ss_pred             HhcCCCCCCCCeEEEECCCCcHHHHHHhhCCCEEEEEecCCChhHHHHHHHh-----CCCCeeeecccCCCCCCCccchh
Q 046488          317 EVLDIKPGEIRIGLDFSIGTGTFAARMREFNVTLVSAIINLGAPFNEMIALR-----GLVPLYITINQRVPFFDNTLDLI  391 (480)
Q Consensus       317 ~vL~l~~g~iR~VLDVGCGtG~fAa~Lae~gV~Vv~vd~d~~~~~~~~iA~r-----glip~~~~~ae~LPFpd~SFDlV  391 (480)
                      +.+++.++  .+|||||||+|.++..+++++..+++++++.  .+.. .+.+     ..+.++.+++..++++  .||.|
T Consensus        23 ~~~~~~~~--~~VLEIG~G~G~lt~~L~~~~~~v~~vEid~--~~~~-~l~~~~~~~~~v~ii~~D~~~~~~~--~~d~V   95 (258)
T PRK14896         23 EYAEDTDG--DPVLEIGPGKGALTDELAKRAKKVYAIELDP--RLAE-FLRDDEIAAGNVEIIEGDALKVDLP--EFNKV   95 (258)
T ss_pred             HhcCCCCc--CeEEEEeCccCHHHHHHHHhCCEEEEEECCH--HHHH-HHHHHhccCCCEEEEEeccccCCch--hceEE
Confidence            33445444  4899999999999999999887888888763  2222 2222     2344566677777765  48999


Q ss_pred             eecccc
Q 046488          392 HTTRFL  397 (480)
Q Consensus       392 ~ss~vL  397 (480)
                      +++--.
T Consensus        96 v~NlPy  101 (258)
T PRK14896         96 VSNLPY  101 (258)
T ss_pred             EEcCCc
Confidence            886543

>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional

Probab=97.54  E-value=0.00037  Score=73.90  Aligned_cols=99  Identities=18%  Similarity=-0.017  Sum_probs=57.4

Q ss_pred             CeEEEECCCCcHHHHHHhhCCC-EEEEEecCCCh--hHHHHHHHhCC----CCeeeecccC----CCCCCCccchheecc
Q 046488          327 RIGLDFSIGTGTFAARMREFNV-TLVSAIINLGA--PFNEMIALRGL----VPLYITINQR----VPFFDNTLDLIHTTR  395 (480)
Q Consensus       327 R~VLDVGCGtG~fAa~Lae~gV-~Vv~vd~d~~~--~~~~~iA~rgl----ip~~~~~ae~----LPFpd~SFDlV~ss~  395 (480)
                      ++|||+|||||.|+..++..|. .+++++.+..+  .+.+.++..+.    +.++.+++..    +.-..++||+|++.=
T Consensus       222 ~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVilDP  301 (396)
T PRK15128        222 KRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIVMDP  301 (396)
T ss_pred             CeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEEECC
Confidence            4899999999999987666554 67787765321  11222333332    1233444222    112356899999752


Q ss_pred             cccCccCh-------hcHHHHHHHHHhcccCCcEEEEe
Q 046488          396 FLDGWIDF-------VLLDFILYDWDRVLRPGGLLWID  426 (480)
Q Consensus       396 vL~h~~d~-------~~l~~~L~EI~RVLKPGG~fiI~  426 (480)
                      -. .....       .....++....++|+|||.++..
T Consensus       302 P~-f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~  338 (396)
T PRK15128        302 PK-FVENKSQLMGACRGYKDINMLAIQLLNPGGILLTF  338 (396)
T ss_pred             CC-CCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEE
Confidence            11 00111       11234555678999999998874

>PRK04148 hypothetical protein; Provisional

Probab=97.51  E-value=0.00058  Score=62.54  Aligned_cols=91  Identities=14%  Similarity=0.038  Sum_probs=59.7

Q ss_pred             CeEEEECCCCcH-HHHHHhhCCCEEEEEecCCChhHHHHHHHhCCCCeeeecccCCCCC-CCccchheecccccCccChh
Q 046488          327 RIGLDFSIGTGT-FAARMREFNVTLVSAIINLGAPFNEMIALRGLVPLYITINQRVPFF-DNTLDLIHTTRFLDGWIDFV  404 (480)
Q Consensus       327 R~VLDVGCGtG~-fAa~Lae~gV~Vv~vd~d~~~~~~~~iA~rglip~~~~~ae~LPFp-d~SFDlV~ss~vL~h~~d~~  404 (480)
                      +++||||||+|. ++..|++.|..|+++|.+.   ...+.+++..+.++.++.-.-++. -..+|+|.+.+.      +.
T Consensus        18 ~kileIG~GfG~~vA~~L~~~G~~ViaIDi~~---~aV~~a~~~~~~~v~dDlf~p~~~~y~~a~liysirp------p~   88 (134)
T PRK04148         18 KKIVELGIGFYFKVAKKLKESGFDVIVIDINE---KAVEKAKKLGLNAFVDDLFNPNLEIYKNAKLIYSIRP------PR   88 (134)
T ss_pred             CEEEEEEecCCHHHHHHHHHCCCEEEEEECCH---HHHHHHHHhCCeEEECcCCCCCHHHHhcCCEEEEeCC------CH
Confidence            579999999996 9999999999999999773   334445555667777763333322 466888887542      32


Q ss_pred             cHHHHHHHHHhcccCCcEEEEeec
Q 046488          405 LLDFILYDWDRVLRPGGLLWIDSF  428 (480)
Q Consensus       405 ~l~~~L~EI~RVLKPGG~fiI~~f  428 (480)
                      ++...+.++.+-+  |.-++|..+
T Consensus        89 el~~~~~~la~~~--~~~~~i~~l  110 (134)
T PRK04148         89 DLQPFILELAKKI--NVPLIIKPL  110 (134)
T ss_pred             HHHHHHHHHHHHc--CCCEEEEcC
Confidence            3345566666544  344555443

>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed

Probab=97.47  E-value=0.00025  Score=71.04  Aligned_cols=73  Identities=12%  Similarity=0.119  Sum_probs=49.4

Q ss_pred             hcCCCCCCCCeEEEECCCCcHHHHHHhhCCCEEEEEecCCChhHHHHHHHh---CCCCeeeecccCCCCCCCccchheec
Q 046488          318 VLDIKPGEIRIGLDFSIGTGTFAARMREFNVTLVSAIINLGAPFNEMIALR---GLVPLYITINQRVPFFDNTLDLIHTT  394 (480)
Q Consensus       318 vL~l~~g~iR~VLDVGCGtG~fAa~Lae~gV~Vv~vd~d~~~~~~~~iA~r---glip~~~~~ae~LPFpd~SFDlV~ss  394 (480)
                      .+.+.++  .+|||+|||+|.++..+++++..+++++.+.  .+......+   ..+.++.+++..+++++-.+|.|+++
T Consensus        37 ~l~~~~~--~~VLEiG~G~G~lt~~L~~~~~~v~avE~d~--~~~~~~~~~~~~~~v~~i~~D~~~~~~~~~~~~~vv~N  112 (272)
T PRK00274         37 AAGPQPG--DNVLEIGPGLGALTEPLLERAAKVTAVEIDR--DLAPILAETFAEDNLTIIEGDALKVDLSELQPLKVVAN  112 (272)
T ss_pred             hcCCCCc--CeEEEeCCCccHHHHHHHHhCCcEEEEECCH--HHHHHHHHhhccCceEEEEChhhcCCHHHcCcceEEEe
Confidence            3444444  4899999999999999999877888888763  333322221   23556677777787765435777765

>PLN02476 O-methyltransferase

Probab=97.47  E-value=0.00027  Score=71.77  Aligned_cols=105  Identities=12%  Similarity=0.119  Sum_probs=64.7

Q ss_pred             HHHhcCCCCCCCCeEEEECCCCcHHHHHHhhC---CCEEEEEecCCCh--hHHHHHHHhCC---CCeeeec-ccCCCC--
Q 046488          315 IPEVLDIKPGEIRIGLDFSIGTGTFAARMREF---NVTLVSAIINLGA--PFNEMIALRGL---VPLYITI-NQRVPF--  383 (480)
Q Consensus       315 I~~vL~l~~g~iR~VLDVGCGtG~fAa~Lae~---gV~Vv~vd~d~~~--~~~~~iA~rgl---ip~~~~~-ae~LPF--  383 (480)
                      +..++.+..  .++|||||+|+|..+..++..   +-.+++++.+...  .+.+.+++.|.   +.+..+. .+-|+-  
T Consensus       110 L~~L~~~~~--ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~  187 (278)
T PLN02476        110 LAMLVQILG--AERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMI  187 (278)
T ss_pred             HHHHHHhcC--CCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHH
Confidence            333444443  358999999999999988863   3356777765321  12223333343   3334444 222321  


Q ss_pred             ---CCCccchheecccccCccChhcHHHHHHHHHhcccCCcEEEEee
Q 046488          384 ---FDNTLDLIHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDS  427 (480)
Q Consensus       384 ---pd~SFDlV~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~  427 (480)
                         .+++||+|+...    ...  .-..++..+.+.|||||.+++++
T Consensus       188 ~~~~~~~FD~VFIDa----~K~--~Y~~y~e~~l~lL~~GGvIV~DN  228 (278)
T PLN02476        188 QNGEGSSYDFAFVDA----DKR--MYQDYFELLLQLVRVGGVIVMDN  228 (278)
T ss_pred             hcccCCCCCEEEECC----CHH--HHHHHHHHHHHhcCCCcEEEEec
Confidence               246899999533    221  22568999999999999999885

>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases

Probab=97.46  E-value=0.00026  Score=68.76  Aligned_cols=96  Identities=18%  Similarity=0.104  Sum_probs=61.4

Q ss_pred             CCeEEEECCCCcHHHHHHhhC---CCEEEEEecCCCh--hHHHHHHHhCC---CCeeeec-ccCCC-----CCCCccchh
Q 046488          326 IRIGLDFSIGTGTFAARMREF---NVTLVSAIINLGA--PFNEMIALRGL---VPLYITI-NQRVP-----FFDNTLDLI  391 (480)
Q Consensus       326 iR~VLDVGCGtG~fAa~Lae~---gV~Vv~vd~d~~~--~~~~~iA~rgl---ip~~~~~-ae~LP-----Fpd~SFDlV  391 (480)
                      .++||+|||++|..+..|++.   +..+++++.+...  .+...+.+.|.   +.+..+. .+-|+     ...+.||+|
T Consensus        46 ~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD~V  125 (205)
T PF01596_consen   46 PKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFDFV  125 (205)
T ss_dssp             -SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEEEE
T ss_pred             CceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCceeEE
Confidence            358999999999999999874   5678888876311  11122222232   3444554 22222     124689999


Q ss_pred             eecccccCccChhcHHHHHHHHHhcccCCcEEEEee
Q 046488          392 HTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDS  427 (480)
Q Consensus       392 ~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~  427 (480)
                      +...    ....  -..++..+.+.|||||.+++++
T Consensus       126 FiDa----~K~~--y~~y~~~~~~ll~~ggvii~DN  155 (205)
T PF01596_consen  126 FIDA----DKRN--YLEYFEKALPLLRPGGVIIADN  155 (205)
T ss_dssp             EEES----TGGG--HHHHHHHHHHHEEEEEEEEEET
T ss_pred             EEcc----cccc--hhhHHHHHhhhccCCeEEEEcc
Confidence            9643    2222  2458889999999999999985

The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....

>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]

Probab=97.43  E-value=0.00074  Score=68.30  Aligned_cols=42  Identities=31%  Similarity=0.480  Sum_probs=36.8

Q ss_pred             CCCccchheecccccCccChhcHHHHHHHHHhcccCCcEEEEe
Q 046488          384 FDNTLDLIHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWID  426 (480)
Q Consensus       384 pd~SFDlV~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~  426 (480)
                      ..+-||+|+|..+|+.+....+ ..++..++..|+|||++++.
T Consensus       199 ~~~~fD~IfCRNVLIYFd~~~q-~~il~~f~~~L~~gG~LflG  240 (268)
T COG1352         199 FLGKFDLIFCRNVLIYFDEETQ-ERILRRFADSLKPGGLLFLG  240 (268)
T ss_pred             ccCCCCEEEEcceEEeeCHHHH-HHHHHHHHHHhCCCCEEEEc
Confidence            5677999999999998876554 77999999999999999985

>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []

Probab=97.43  E-value=0.0005  Score=74.10  Aligned_cols=97  Identities=22%  Similarity=0.199  Sum_probs=60.6

Q ss_pred             CCeEEEECCCCcHHHHHHhhC------CCEEEEEecCCChh-HHHHH-HHhC---CCCeeeecccCCCCCCCccchheec
Q 046488          326 IRIGLDFSIGTGTFAARMREF------NVTLVSAIINLGAP-FNEMI-ALRG---LVPLYITINQRVPFFDNTLDLIHTT  394 (480)
Q Consensus       326 iR~VLDVGCGtG~fAa~Lae~------gV~Vv~vd~d~~~~-~~~~i-A~rg---lip~~~~~ae~LPFpd~SFDlV~ss  394 (480)
                      ..+|||||||+|.+....++.      .+.|.++.-+..+. .+.+. ...+   .+.++.++.+.+..+. .+|+|++-
T Consensus       187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lpe-kvDIIVSE  265 (448)
T PF05185_consen  187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVELPE-KVDIIVSE  265 (448)
T ss_dssp             T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCHSS--EEEEEE-
T ss_pred             ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCCCC-ceeEEEEe
Confidence            358999999999987655443      36777777553222 22222 3333   3556677788777654 89999984


Q ss_pred             ccccCccChhcHHHHHHHHHhcccCCcEEE
Q 046488          395 RFLDGWIDFVLLDFILYDWDRVLRPGGLLW  424 (480)
Q Consensus       395 ~vL~h~~d~~~l~~~L~EI~RVLKPGG~fi  424 (480)
                      . |-.+.+.+.+...|.-..|.|||||.++
T Consensus       266 l-LGsfg~nEl~pE~Lda~~rfLkp~Gi~I  294 (448)
T PF05185_consen  266 L-LGSFGDNELSPECLDAADRFLKPDGIMI  294 (448)
T ss_dssp             ---BTTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred             c-cCCccccccCHHHHHHHHhhcCCCCEEe
Confidence            3 2234444455668999999999999866

These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....

>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=97.43  E-value=0.0021  Score=62.76  Aligned_cols=135  Identities=19%  Similarity=0.201  Sum_probs=74.2

Q ss_pred             CeEEEECCCCcHHHHHHhhC---CCEEEEEecCCChhHHHHHHHhCCCCeeeec----------ccCCCCCCCccchhee
Q 046488          327 RIGLDFSIGTGTFAARMREF---NVTLVSAIINLGAPFNEMIALRGLVPLYITI----------NQRVPFFDNTLDLIHT  393 (480)
Q Consensus       327 R~VLDVGCGtG~fAa~Lae~---gV~Vv~vd~d~~~~~~~~iA~rglip~~~~~----------ae~LPFpd~SFDlV~s  393 (480)
                      .+|+|+|+-.|+|+..++++   +..++++|+....+.       .++....++          .+.++  ...+|+|.|
T Consensus        47 ~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~~-------~~V~~iq~d~~~~~~~~~l~~~l~--~~~~DvV~s  117 (205)
T COG0293          47 MVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKPI-------PGVIFLQGDITDEDTLEKLLEALG--GAPVDVVLS  117 (205)
T ss_pred             CEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccccC-------CCceEEeeeccCccHHHHHHHHcC--CCCcceEEe
Confidence            48999999999999999886   333677776432211       112222222          22222  334788886


Q ss_pred             cccc---cCcc-Ch---hcH-HHHHHHHHhcccCCcEEEEeeccCChhhHHHHHHHHHHcCceeeEEEEeeccCCCCcce
Q 046488          394 TRFL---DGWI-DF---VLL-DFILYDWDRVLRPGGLLWIDSFFCAKEDMNDYLEVFKMLKYKKHKWVVVPKRDKDDREV  465 (480)
Q Consensus       394 s~vL---~h~~-d~---~~l-~~~L~EI~RVLKPGG~fiI~~f~~~~edL~~~~~~l~~lGfkkl~W~~~~k~d~~~~E~  465 (480)
                      ..+=   .++. |.   ..+ ..++.=..++|+|||.|++-.|....  .+.+...++++ |++++-...........|.
T Consensus       118 D~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fqg~~--~~~~l~~~~~~-F~~v~~~KP~aSR~~S~E~  194 (205)
T COG0293         118 DMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQGED--FEDLLKALRRL-FRKVKIFKPKASRKRSREI  194 (205)
T ss_pred             cCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEeCCC--HHHHHHHHHHh-hceeEEecCccccCCCceE
Confidence            4321   1111 11   111 23444455699999999998776443  34445555542 6666543322222234588


Q ss_pred             eEEEEEEe
Q 046488          466 FFSAVLEK  473 (480)
Q Consensus       466 ~lsav~qK  473 (480)
                      |+.+.--|
T Consensus       195 y~v~~~~~  202 (205)
T COG0293         195 YLVAKGFK  202 (205)
T ss_pred             EEEEeccc
Confidence            88765443

>COG4122 Predicted O-methyltransferase [General function prediction only]

Probab=97.42  E-value=0.00033  Score=68.95  Aligned_cols=108  Identities=19%  Similarity=0.143  Sum_probs=69.5

Q ss_pred             hHHHhcCCCCCCCCeEEEECCCCcHHHHHHhhC---CCEEEEEecCCCh--hHHHHHHHhCCCC---eee-ec-ccCCC-
Q 046488          314 LIPEVLDIKPGEIRIGLDFSIGTGTFAARMREF---NVTLVSAIINLGA--PFNEMIALRGLVP---LYI-TI-NQRVP-  382 (480)
Q Consensus       314 ~I~~vL~l~~g~iR~VLDVGCGtG~fAa~Lae~---gV~Vv~vd~d~~~--~~~~~iA~rglip---~~~-~~-ae~LP-  382 (480)
                      ++..++.+..  .++||+||.++|..+..|+..   +..+++++.+...  .+.+.+++.|.-+   ... ++ .+.+. 
T Consensus        50 ~L~~L~~~~~--~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~  127 (219)
T COG4122          50 LLRLLARLSG--PKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSR  127 (219)
T ss_pred             HHHHHHHhcC--CceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHh
Confidence            4444555553  358999999999999988863   3467777765321  2223333434322   334 23 23333 


Q ss_pred             CCCCccchheecccccCccChhcHHHHHHHHHhcccCCcEEEEeecc
Q 046488          383 FFDNTLDLIHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDSFF  429 (480)
Q Consensus       383 Fpd~SFDlV~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~f~  429 (480)
                      +.+++||+|+..    +....-  ..++.++.+.|||||.+++++..
T Consensus       128 ~~~~~fDliFID----adK~~y--p~~le~~~~lLr~GGliv~DNvl  168 (219)
T COG4122         128 LLDGSFDLVFID----ADKADY--PEYLERALPLLRPGGLIVADNVL  168 (219)
T ss_pred             ccCCCccEEEEe----CChhhC--HHHHHHHHHHhCCCcEEEEeecc
Confidence            678999999953    333222  56999999999999999998643

>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB

Probab=97.42  E-value=0.0011  Score=69.65  Aligned_cols=114  Identities=14%  Similarity=0.143  Sum_probs=64.5

Q ss_pred             CeEEEECCCCcHHHHHHhhCCCEEEEEecCCChhH--HHHHHHhCC--CCeeeecccCC-CCCCCccchheecccccCcc
Q 046488          327 RIGLDFSIGTGTFAARMREFNVTLVSAIINLGAPF--NEMIALRGL--VPLYITINQRV-PFFDNTLDLIHTTRFLDGWI  401 (480)
Q Consensus       327 R~VLDVGCGtG~fAa~Lae~gV~Vv~vd~d~~~~~--~~~iA~rgl--ip~~~~~ae~L-PFpd~SFDlV~ss~vL~h~~  401 (480)
                      .+|||+|||+|.++..++.++..+++++.+..+-.  ...+...+.  +.+..++++.+ +-..+.||+|+..=--..  
T Consensus       235 ~~vLDL~cG~G~~~l~la~~~~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~~~~~~D~vi~DPPr~G--  312 (374)
T TIGR02085       235 TQMWDLFCGVGGFGLHCAGPDTQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATAQMSAPELVLVNPPRRG--  312 (374)
T ss_pred             CEEEEccCCccHHHHHHhhcCCeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHhcCCCCCEEEECCCCCC--
Confidence            48999999999999999988888888887632211  111112222  23344443332 212246999886411111  


Q ss_pred             ChhcHHHHHHHHHhcccCCcEEEEeeccCChhhHHHHHHHHHHcCceeeE
Q 046488          402 DFVLLDFILYDWDRVLRPGGLLWIDSFFCAKEDMNDYLEVFKMLKYKKHK  451 (480)
Q Consensus       402 d~~~l~~~L~EI~RVLKPGG~fiI~~f~~~~edL~~~~~~l~~lGfkkl~  451 (480)
                         ....++..+. -++|++.++++   |.+..+.+=...+  .||+-..
T Consensus       313 ---~~~~~l~~l~-~~~p~~ivyvs---c~p~TlaRDl~~L--~gy~l~~  353 (374)
T TIGR02085       313 ---IGKELCDYLS-QMAPKFILYSS---CNAQTMAKDIAEL--SGYQIER  353 (374)
T ss_pred             ---CcHHHHHHHH-hcCCCeEEEEE---eCHHHHHHHHHHh--cCceEEE
Confidence               1123444444 48999998885   4455553322233  5786443

This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.

>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed

Probab=97.41  E-value=0.0042  Score=67.47  Aligned_cols=112  Identities=16%  Similarity=0.178  Sum_probs=65.0

Q ss_pred             hHHHhc--CCCCCCCCeEEEECCCCcHHHHHHhhC---CCEEEEEecCCC--hhHHHHHHHhCCCCeee--ecccCCC-C
Q 046488          314 LIPEVL--DIKPGEIRIGLDFSIGTGTFAARMREF---NVTLVSAIINLG--APFNEMIALRGLVPLYI--TINQRVP-F  383 (480)
Q Consensus       314 ~I~~vL--~l~~g~iR~VLDVGCGtG~fAa~Lae~---gV~Vv~vd~d~~--~~~~~~iA~rglip~~~--~~ae~LP-F  383 (480)
                      +...+|  +..+|+  +|||+++|.|+=+.++++.   .-.+++.+++..  ....+.+.+-|...+.+  .+...++ .
T Consensus       102 l~~~~L~~~~~pg~--~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~~  179 (470)
T PRK11933        102 LPVAALFADDNAPQ--RVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGAA  179 (470)
T ss_pred             HHHHHhccCCCCCC--EEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhhh
Confidence            444556  455664  8999999999988887764   125667766532  11222333333323222  2333332 3


Q ss_pred             CCCccchhe----ecc--cccC-------ccCh------hcHHHHHHHHHhcccCCcEEEEee
Q 046488          384 FDNTLDLIH----TTR--FLDG-------WIDF------VLLDFILYDWDRVLRPGGLLWIDS  427 (480)
Q Consensus       384 pd~SFDlV~----ss~--vL~h-------~~d~------~~l~~~L~EI~RVLKPGG~fiI~~  427 (480)
                      ..+.||.|+    |+.  ++..       |...      ..-..+|....+.|||||+++.+.
T Consensus       180 ~~~~fD~ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYST  242 (470)
T PRK11933        180 LPETFDAILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYST  242 (470)
T ss_pred             chhhcCeEEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEC
Confidence            456899999    542  2221       2110      001458889999999999998774

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=97.40  E-value=0.00052  Score=74.86  Aligned_cols=100  Identities=16%  Similarity=0.165  Sum_probs=65.8

Q ss_pred             CCCeEEEECCCCcHHHHHHhhC--CCEEEEEecCCC--hhHHHHHHHhCCCCee--eecc---cCCCCCCCccchheecc
Q 046488          325 EIRIGLDFSIGTGTFAARMREF--NVTLVSAIINLG--APFNEMIALRGLVPLY--ITIN---QRVPFFDNTLDLIHTTR  395 (480)
Q Consensus       325 ~iR~VLDVGCGtG~fAa~Lae~--gV~Vv~vd~d~~--~~~~~~iA~rglip~~--~~~a---e~LPFpd~SFDlV~ss~  395 (480)
                      +...+||||||.|.|...+|..  ...+++++....  ..+..++..+++-++.  ...+   ... |+++++|.|+..+
T Consensus       347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~~~-~~~~sv~~i~i~F  425 (506)
T PRK01544        347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLILND-LPNNSLDGIYILF  425 (506)
T ss_pred             CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHh-cCcccccEEEEEC
Confidence            3468999999999999999987  456677776531  1222333344443332  2222   222 6799999999765


Q ss_pred             cccCccCh------hcHHHHHHHHHhcccCCcEEEEe
Q 046488          396 FLDGWIDF------VLLDFILYDWDRVLRPGGLLWID  426 (480)
Q Consensus       396 vL~h~~d~------~~l~~~L~EI~RVLKPGG~fiI~  426 (480)
                      - .+|+..      -.-..++.++.|+|||||.+.+.
T Consensus       426 P-DPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~  461 (506)
T PRK01544        426 P-DPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFA  461 (506)
T ss_pred             C-CCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEE
Confidence            4 456421      11145899999999999998873

>TIGR00755 ksgA dimethyladenosine transferase

Probab=97.29  E-value=0.001  Score=65.65  Aligned_cols=65  Identities=9%  Similarity=0.081  Sum_probs=43.4

Q ss_pred             CCeEEEECCCCcHHHHHHhhCCCEEEEEecCCChhHHHHHHHh----CCCCeeeecccCCCCCCCccc---hheec
Q 046488          326 IRIGLDFSIGTGTFAARMREFNVTLVSAIINLGAPFNEMIALR----GLVPLYITINQRVPFFDNTLD---LIHTT  394 (480)
Q Consensus       326 iR~VLDVGCGtG~fAa~Lae~gV~Vv~vd~d~~~~~~~~iA~r----glip~~~~~ae~LPFpd~SFD---lV~ss  394 (480)
                      ..+|||+|||+|.++..|++++..+++++.+.  .+......+    ..+....+++..+|++  +||   +|+++
T Consensus        30 ~~~VLEiG~G~G~lt~~L~~~~~~v~~iE~d~--~~~~~l~~~~~~~~~v~v~~~D~~~~~~~--~~d~~~~vvsN  101 (253)
T TIGR00755        30 GDVVLEIGPGLGALTEPLLKRAKKVTAIEIDP--RLAEILRKLLSLYERLEVIEGDALKVDLP--DFPKQLKVVSN  101 (253)
T ss_pred             cCEEEEeCCCCCHHHHHHHHhCCcEEEEECCH--HHHHHHHHHhCcCCcEEEEECchhcCChh--HcCCcceEEEc
Confidence            35899999999999999999877788887763  232222111    2344556667777765  566   55543

Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase

>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.16  E-value=0.00013  Score=68.68  Aligned_cols=48  Identities=31%  Similarity=0.342  Sum_probs=42.5

Q ss_pred             ccCCCCCCCccchheecccccCccChhcHHHHHHHHHhcccCCcEEEEe
Q 046488          378 NQRVPFFDNTLDLIHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWID  426 (480)
Q Consensus       378 ae~LPFpd~SFDlV~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~  426 (480)
                      ....+|.|+|.|+|.+.+++.|+.-.+. ..+++|.+|+|||||++-++
T Consensus        38 s~e~~F~dns~d~iyaeHvlEHlt~~Eg-~~alkechr~Lrp~G~LriA   85 (185)
T COG4627          38 SNESMFEDNSVDAIYAEHVLEHLTYDEG-TSALKECHRFLRPGGKLRIA   85 (185)
T ss_pred             hhhccCCCcchHHHHHHHHHHHHhHHHH-HHHHHHHHHHhCcCcEEEEE
Confidence            4568999999999999999999976543 67999999999999999886

>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=97.15  E-value=0.0022  Score=64.54  Aligned_cols=94  Identities=19%  Similarity=0.203  Sum_probs=59.7

Q ss_pred             ccCCCCCC-----CccchheecccccCcc-ChhcHHHHHHHHHhcccCCcEEEEeec-------------cCChhhHHHH
Q 046488          378 NQRVPFFD-----NTLDLIHTTRFLDGWI-DFVLLDFILYDWDRVLRPGGLLWIDSF-------------FCAKEDMNDY  438 (480)
Q Consensus       378 ae~LPFpd-----~SFDlV~ss~vL~h~~-d~~~l~~~L~EI~RVLKPGG~fiI~~f-------------~~~~edL~~~  438 (480)
                      .+.-|+.+     ..||+|++.+||.-.. +.+.-..++..+.+.|||||.|++...             .+-.-+.+.+
T Consensus       144 ~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l~~t~Y~vG~~~F~~l~l~ee~v  223 (256)
T PF01234_consen  144 TQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVLGSTYYMVGGHKFPCLPLNEEFV  223 (256)
T ss_dssp             TSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEESS-SEEEETTEEEE---B-HHHH
T ss_pred             cCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEcCceeEEECCEecccccCCHHHH
Confidence            44445544     3599999999997664 444456799999999999999998732             1111123457


Q ss_pred             HHHHHHcCceeeEEEEeeccCCCCcceeEEEEEEe
Q 046488          439 LEVFKMLKYKKHKWVVVPKRDKDDREVFFSAVLEK  473 (480)
Q Consensus       439 ~~~l~~lGfkkl~W~~~~k~d~~~~E~~lsav~qK  473 (480)
                      .+.++..||....+..  ...-...+.++-++-||
T Consensus       224 ~~al~~aG~~i~~~~~--~~~~~d~~~~~f~~a~K  256 (256)
T PF01234_consen  224 REALEEAGFDIEDLEK--QSKVSDYEGMFFLVARK  256 (256)
T ss_dssp             HHHHHHTTEEEEEEEG---TTTB---EEEEEEEEE
T ss_pred             HHHHHHcCCEEEeccc--ccCcCCCCcEEEEEEeC
Confidence            7899999998777773  11112234445556666

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....

>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length

Probab=97.13  E-value=0.0017  Score=66.51  Aligned_cols=128  Identities=19%  Similarity=0.161  Sum_probs=80.3

Q ss_pred             CCCCeEEEECCCCcHHHHHHhhC-C---CEEEEEecCC--ChhHHHHHHHhCCCC---eeeec---ccCCCCCCCccchh
Q 046488          324 GEIRIGLDFSIGTGTFAARMREF-N---VTLVSAIINL--GAPFNEMIALRGLVP---LYITI---NQRVPFFDNTLDLI  391 (480)
Q Consensus       324 g~iR~VLDVGCGtG~fAa~Lae~-g---V~Vv~vd~d~--~~~~~~~iA~rglip---~~~~~---ae~LPFpd~SFDlV  391 (480)
                      +..-+||||.||.|.......+. .   ..+.-.+.+.  ....+..++.+|+-.   +..++   .+.+.--+-..+++
T Consensus       134 g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~  213 (311)
T PF12147_consen  134 GRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTLA  213 (311)
T ss_pred             CCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCEE
Confidence            33447999999999876544432 2   2222222221  112233456666533   33333   12222224557899


Q ss_pred             eecccccCccChhcHHHHHHHHHhcccCCcEEEEee--ccCChhh--------------------HHHHHHHHHHcCcee
Q 046488          392 HTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDS--FFCAKED--------------------MNDYLEVFKMLKYKK  449 (480)
Q Consensus       392 ~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~--f~~~~ed--------------------L~~~~~~l~~lGfkk  449 (480)
                      +.+..+..+.|+..+...+.-+.+.|.|||+++...  |....+.                    ..++.++++.+||++
T Consensus       214 iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwHPQle~IAr~LtsHr~g~~WvMRrRsq~EmD~Lv~~aGF~K  293 (311)
T PF12147_consen  214 IVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWHPQLEMIARVLTSHRDGKAWVMRRRSQAEMDQLVEAAGFEK  293 (311)
T ss_pred             EEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCCcchHHHHHHHhcccCCCceEEEecCHHHHHHHHHHcCCch
Confidence            999998888888877788999999999999999985  6554332                    123456777788876


Q ss_pred             eE
Q 046488          450 HK  451 (480)
Q Consensus       450 l~  451 (480)
                      +.
T Consensus       294 ~~  295 (311)
T PF12147_consen  294 ID  295 (311)
T ss_pred             hh
Confidence            64

It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.

>PRK11727 23S rRNA mA1618 methyltransferase; Provisional

Probab=97.11  E-value=0.0056  Score=63.49  Aligned_cols=72  Identities=17%  Similarity=0.165  Sum_probs=42.4

Q ss_pred             CCCCeEEEECCCCcHHHHHHhhC--CCEEEEEecCCChh--HHHHHHHh-CC---CCeee-ec----ccCCCCCCCccch
Q 046488          324 GEIRIGLDFSIGTGTFAARMREF--NVTLVSAIINLGAP--FNEMIALR-GL---VPLYI-TI----NQRVPFFDNTLDL  390 (480)
Q Consensus       324 g~iR~VLDVGCGtG~fAa~Lae~--gV~Vv~vd~d~~~~--~~~~iA~r-gl---ip~~~-~~----ae~LPFpd~SFDl  390 (480)
                      +...+|||||||+|..+..|+.+  +..+++++++..+-  +...++.. +.   +.+.. ..    .+.+..+++.||+
T Consensus       113 ~~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDl  192 (321)
T PRK11727        113 GANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDA  192 (321)
T ss_pred             CCCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEE
Confidence            34468999999999888777654  77888888763221  12223333 22   11222 11    1122235778999


Q ss_pred             heecc
Q 046488          391 IHTTR  395 (480)
Q Consensus       391 V~ss~  395 (480)
                      |+|+=
T Consensus       193 ivcNP  197 (321)
T PRK11727        193 TLCNP  197 (321)
T ss_pred             EEeCC
Confidence            99973

>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT)

Probab=97.10  E-value=0.0038  Score=63.35  Aligned_cols=125  Identities=16%  Similarity=0.099  Sum_probs=77.5

Q ss_pred             CeEEEECCCCcHHHHHHhhCCCEEEEEecCCChhHHHHHHHhC-----C---CCee------------------------
Q 046488          327 RIGLDFSIGTGTFAARMREFNVTLVSAIINLGAPFNEMIALRG-----L---VPLY------------------------  374 (480)
Q Consensus       327 R~VLDVGCGtG~fAa~Lae~gV~Vv~vd~d~~~~~~~~iA~rg-----l---ip~~------------------------  374 (480)
                      .+||==|||.|.++-.++.+|..+.+...+...-...++...+     .   .|+.                        
T Consensus        58 ~~VLVPGsGLGRLa~Eia~~G~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPDv~p~  137 (270)
T PF07942_consen   58 IRVLVPGSGLGRLAWEIAKLGYAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPDVDPS  137 (270)
T ss_pred             cEEEEcCCCcchHHHHHhhccceEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCCcCcc
Confidence            4799999999999999999999887776442111111121111     0   0111                        


Q ss_pred             ------------eecccCCCCCC---CccchheecccccCccChhcHHHHHHHHHhcccCCcEEEEe-----eccCC--h
Q 046488          375 ------------ITINQRVPFFD---NTLDLIHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWID-----SFFCA--K  432 (480)
Q Consensus       375 ------------~~~ae~LPFpd---~SFDlV~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~-----~f~~~--~  432 (480)
                                  .++...+.-++   ++||+|++.+.+.-   ...+-.+|..|.++|||||+.|=.     +|...  .
T Consensus       138 ~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDT---A~Ni~~Yi~tI~~lLkpgG~WIN~GPLlyh~~~~~~~  214 (270)
T PF07942_consen  138 SELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDT---AENIIEYIETIEHLLKPGGYWINFGPLLYHFEPMSIP  214 (270)
T ss_pred             cccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeec---hHHHHHHHHHHHHHhccCCEEEecCCccccCCCCCCC
Confidence                        11111222223   79999998765432   222456999999999999964322     23322  1


Q ss_pred             ----hh--HHHHHHHHHHcCceeeEEEE
Q 046488          433 ----ED--MNDYLEVFKMLKYKKHKWVV  454 (480)
Q Consensus       433 ----ed--L~~~~~~l~~lGfkkl~W~~  454 (480)
                          -+  ++++..+++.+||+.+....
T Consensus       215 ~~~sveLs~eEi~~l~~~~GF~~~~~~~  242 (270)
T PF07942_consen  215 NEMSVELSLEEIKELIEKLGFEIEKEES  242 (270)
T ss_pred             CCcccCCCHHHHHHHHHHCCCEEEEEEE
Confidence                11  46788999999999887665

This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].

>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional

Probab=97.05  E-value=0.0021  Score=62.11  Aligned_cols=98  Identities=11%  Similarity=0.044  Sum_probs=53.9

Q ss_pred             CeEEEECCCCcHHHHHHhhC-CCEEEEEecCCChh--HHHHHHHhCC--CCeeeecc-cCCCCCCCccchheecccccCc
Q 046488          327 RIGLDFSIGTGTFAARMREF-NVTLVSAIINLGAP--FNEMIALRGL--VPLYITIN-QRVPFFDNTLDLIHTTRFLDGW  400 (480)
Q Consensus       327 R~VLDVGCGtG~fAa~Lae~-gV~Vv~vd~d~~~~--~~~~iA~rgl--ip~~~~~a-e~LPFpd~SFDlV~ss~vL~h~  400 (480)
                      .+|||+|||+|.++..++.+ ...+++++.+..+-  +...+...+.  +.++.+++ +.++...+.||+|++.==+.  
T Consensus        55 ~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~~~~~~fDlV~~DPPy~--  132 (199)
T PRK10909         55 ARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLAQPGTPHNVVFVDPPFR--  132 (199)
T ss_pred             CEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHhhcCCCceEEEECCCCC--
Confidence            48999999999999865544 45677777652111  1112222222  22333442 22333356799999743211  


Q ss_pred             cChhcHHHHHHHHHh--cccCCcEEEEeec
Q 046488          401 IDFVLLDFILYDWDR--VLRPGGLLWIDSF  428 (480)
Q Consensus       401 ~d~~~l~~~L~EI~R--VLKPGG~fiI~~f  428 (480)
                       . .....++.-+..  .|+|+|.+++.+.
T Consensus       133 -~-g~~~~~l~~l~~~~~l~~~~iv~ve~~  160 (199)
T PRK10909        133 -K-GLLEETINLLEDNGWLADEALIYVESE  160 (199)
T ss_pred             -C-ChHHHHHHHHHHCCCcCCCcEEEEEec
Confidence             1 111234444433  4799999888643

>PLN02589 caffeoyl-CoA O-methyltransferase

Probab=96.95  E-value=0.0016  Score=65.15  Aligned_cols=96  Identities=14%  Similarity=0.053  Sum_probs=61.0

Q ss_pred             CCeEEEECCCCcHHHHHHhhC---CCEEEEEecCCCh--hHHHHHHHhCC---CCeeeec-ccCCCC------CCCccch
Q 046488          326 IRIGLDFSIGTGTFAARMREF---NVTLVSAIINLGA--PFNEMIALRGL---VPLYITI-NQRVPF------FDNTLDL  390 (480)
Q Consensus       326 iR~VLDVGCGtG~fAa~Lae~---gV~Vv~vd~d~~~--~~~~~iA~rgl---ip~~~~~-ae~LPF------pd~SFDl  390 (480)
                      .++||+||+++|.-+..|+..   +..+++++.+...  .+...+...|.   +.+..+. .+.||-      .+++||+
T Consensus        80 ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~fD~  159 (247)
T PLN02589         80 AKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGTFDF  159 (247)
T ss_pred             CCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCcccE
Confidence            358999999999998888763   4467777765321  12223334443   3344444 233332      2478999


Q ss_pred             heecccccCccChhcHHHHHHHHHhcccCCcEEEEee
Q 046488          391 IHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDS  427 (480)
Q Consensus       391 V~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~  427 (480)
                      |+...    ....  -..++..+.+.|||||.+++++
T Consensus       160 iFiDa----dK~~--Y~~y~~~~l~ll~~GGviv~DN  190 (247)
T PLN02589        160 IFVDA----DKDN--YINYHKRLIDLVKVGGVIGYDN  190 (247)
T ss_pred             EEecC----CHHH--hHHHHHHHHHhcCCCeEEEEcC
Confidence            99643    2222  1457888899999999999885

>PLN02823 spermine synthase

Probab=96.94  E-value=0.008  Score=62.68  Aligned_cols=98  Identities=16%  Similarity=0.085  Sum_probs=59.1

Q ss_pred             CCCeEEEECCCCcHHHHHHhhC-CC-EEEEEecCCChhHHHHHHHhC-----------CCCeeeecc-cCCCCCCCccch
Q 046488          325 EIRIGLDFSIGTGTFAARMREF-NV-TLVSAIINLGAPFNEMIALRG-----------LVPLYITIN-QRVPFFDNTLDL  390 (480)
Q Consensus       325 ~iR~VLDVGCGtG~fAa~Lae~-gV-~Vv~vd~d~~~~~~~~iA~rg-----------lip~~~~~a-e~LPFpd~SFDl  390 (480)
                      ..++||.||+|.|..+..+.++ ++ .++.+++|   +...+++++-           .+.++.+++ +-+.-.+++||+
T Consensus       103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD---~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDv  179 (336)
T PLN02823        103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDID---QEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDV  179 (336)
T ss_pred             CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECC---HHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccE
Confidence            3568999999999999988875 33 45555555   3333344321           123344442 223344678999


Q ss_pred             heecccccCccC-hh---cHHHHHH-HHHhcccCCcEEEEe
Q 046488          391 IHTTRFLDGWID-FV---LLDFILY-DWDRVLRPGGLLWID  426 (480)
Q Consensus       391 V~ss~vL~h~~d-~~---~l~~~L~-EI~RVLKPGG~fiI~  426 (480)
                      |++.. ..++.. +.   --..++. .+.+.|+|||.+++.
T Consensus       180 Ii~D~-~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q  219 (336)
T PLN02823        180 IIGDL-ADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQ  219 (336)
T ss_pred             EEecC-CCccccCcchhhccHHHHHHHHHHhcCCCcEEEEe
Confidence            99752 222210 00   0023676 899999999998764

>PTZ00338 dimethyladenosine transferase-like protein; Provisional

Probab=96.86  E-value=0.0023  Score=65.34  Aligned_cols=74  Identities=15%  Similarity=0.196  Sum_probs=46.7

Q ss_pred             hcCCCCCCCCeEEEECCCCcHHHHHHhhCCCEEEEEecCCC--hhHHHHHHHhC---CCCeeeecccCCCCCCCccchhe
Q 046488          318 VLDIKPGEIRIGLDFSIGTGTFAARMREFNVTLVSAIINLG--APFNEMIALRG---LVPLYITINQRVPFFDNTLDLIH  392 (480)
Q Consensus       318 vL~l~~g~iR~VLDVGCGtG~fAa~Lae~gV~Vv~vd~d~~--~~~~~~iA~rg---lip~~~~~ae~LPFpd~SFDlV~  392 (480)
                      .+.+.++  .+|||||||+|.++..+++.+..++++++|..  ....+.++..+   .+.++.+++...++  ..||.|+
T Consensus        31 ~~~~~~~--~~VLEIG~G~G~LT~~Ll~~~~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~~--~~~d~Vv  106 (294)
T PTZ00338         31 KAAIKPT--DTVLEIGPGTGNLTEKLLQLAKKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTEF--PYFDVCV  106 (294)
T ss_pred             hcCCCCc--CEEEEecCchHHHHHHHHHhCCcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhcc--cccCEEE
Confidence            3345444  38999999999999999998777888887631  11111222222   24455566555544  4689888


Q ss_pred             ecc
Q 046488          393 TTR  395 (480)
Q Consensus       393 ss~  395 (480)
                      ++-
T Consensus       107 aNl  109 (294)
T PTZ00338        107 ANV  109 (294)
T ss_pred             ecC
Confidence            753

>KOG2904 consensus Predicted methyltransferase [General function prediction only]

Probab=96.81  E-value=0.007  Score=61.76  Aligned_cols=99  Identities=17%  Similarity=0.210  Sum_probs=61.3

Q ss_pred             eEEEECCCCcHHHHHHhhC--CCEEEEEecCCChhHH-----HHHHHhCCCCeee-----ecccCCCCCCCccchheecc
Q 046488          328 IGLDFSIGTGTFAARMREF--NVTLVSAIINLGAPFN-----EMIALRGLVPLYI-----TINQRVPFFDNTLDLIHTTR  395 (480)
Q Consensus       328 ~VLDVGCGtG~fAa~Lae~--gV~Vv~vd~d~~~~~~-----~~iA~rglip~~~-----~~ae~LPFpd~SFDlV~ss~  395 (480)
                      .+||+|||+|..+..++..  ..++++++.+..+..+     .+....|.+...+     +.....+..++.+|+++|+=
T Consensus       151 ~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~~~~~l~~~~~dllvsNP  230 (328)
T KOG2904|consen  151 HILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDASDEHPLLEGKIDLLVSNP  230 (328)
T ss_pred             eEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEEecccccccccccccccCceeEEecCC
Confidence            7999999999999888764  4566666654322111     1222334454442     22556677789999999862


Q ss_pred             cccCcc-------------C----------hhcHHHHHHHHHhcccCCcEEEEe
Q 046488          396 FLDGWI-------------D----------FVLLDFILYDWDRVLRPGGLLWID  426 (480)
Q Consensus       396 vL~h~~-------------d----------~~~l~~~L~EI~RVLKPGG~fiI~  426 (480)
                      -...-.             +          .+.+-.++.=+-|.|+|||.+++.
T Consensus       231 PYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le  284 (328)
T KOG2904|consen  231 PYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLE  284 (328)
T ss_pred             CcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEE
Confidence            111000             0          112234667788999999998885

>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=96.76  E-value=0.0016  Score=64.00  Aligned_cols=91  Identities=21%  Similarity=0.205  Sum_probs=60.5

Q ss_pred             CCCCCCCeEEEECCCCcHHHHHHhhC----CCEEEEEecCCChhHHHHH-----------------HHhCCCCeeeeccc
Q 046488          321 IKPGEIRIGLDFSIGTGTFAARMREF----NVTLVSAIINLGAPFNEMI-----------------ALRGLVPLYITINQ  379 (480)
Q Consensus       321 l~~g~iR~VLDVGCGtG~fAa~Lae~----gV~Vv~vd~d~~~~~~~~i-----------------A~rglip~~~~~ae  379 (480)
                      +.+|-  ..||+|.|+|.+++.++..    |..+++++.-   +.+...                 -+++...++++++.
T Consensus        80 L~pG~--s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~---~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr  154 (237)
T KOG1661|consen   80 LQPGA--SFLDVGSGSGYLTACFARMVGATGGNVHGIEHI---PELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGR  154 (237)
T ss_pred             hccCc--ceeecCCCccHHHHHHHHHhcCCCccccchhhh---HHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCcc
Confidence            66774  7999999999988777642    4433555421   111111                 12333445667766


Q ss_pred             CCCCCCCccchheecccccCccChhcHHHHHHHHHhcccCCcEEEE
Q 046488          380 RVPFFDNTLDLIHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWI  425 (480)
Q Consensus       380 ~LPFpd~SFDlV~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI  425 (480)
                      ..--+.+.||.||+....         ....+++...|+|||.+++
T Consensus       155 ~g~~e~a~YDaIhvGAaa---------~~~pq~l~dqL~~gGrlli  191 (237)
T KOG1661|consen  155 KGYAEQAPYDAIHVGAAA---------SELPQELLDQLKPGGRLLI  191 (237)
T ss_pred             ccCCccCCcceEEEccCc---------cccHHHHHHhhccCCeEEE
Confidence            666677889999987443         2357788899999999988

>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=96.76  E-value=0.0041  Score=60.25  Aligned_cols=66  Identities=20%  Similarity=0.151  Sum_probs=40.8

Q ss_pred             CCeEEEECCCCcHHHHHHhhCC-CEEEEEecCCChhH-HHHHHHh--CCCCeeeecccCCCCCCCccchheec
Q 046488          326 IRIGLDFSIGTGTFAARMREFN-VTLVSAIINLGAPF-NEMIALR--GLVPLYITINQRVPFFDNTLDLIHTT  394 (480)
Q Consensus       326 iR~VLDVGCGtG~fAa~Lae~g-V~Vv~vd~d~~~~~-~~~iA~r--glip~~~~~ae~LPFpd~SFDlV~ss  394 (480)
                      .++|+|+|||||.++...+-.| ..|+++++|..+-. ..+-+.+  +.+.++.++..   ..+..||.|+.+
T Consensus        46 g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~l~g~v~f~~~dv~---~~~~~~dtvimN  115 (198)
T COG2263          46 GKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEELLGDVEFVVADVS---DFRGKFDTVIMN  115 (198)
T ss_pred             CCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHhhCCceEEEEcchh---hcCCccceEEEC
Confidence            4579999999999998888777 46778887742211 1122222  22334444433   345678877765

>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G

Probab=96.59  E-value=0.0096  Score=57.05  Aligned_cols=116  Identities=18%  Similarity=0.178  Sum_probs=69.3

Q ss_pred             eEEEECCCCcHHHHHHhh--CCCEEEEEecCCC-hhHHHHHHHh-CCC--CeeeecccCCCCCCCccchheecccccCcc
Q 046488          328 IGLDFSIGTGTFAARMRE--FNVTLVSAIINLG-APFNEMIALR-GLV--PLYITINQRVPFFDNTLDLIHTTRFLDGWI  401 (480)
Q Consensus       328 ~VLDVGCGtG~fAa~Lae--~gV~Vv~vd~d~~-~~~~~~iA~r-gli--p~~~~~ae~LPFpd~SFDlV~ss~vL~h~~  401 (480)
                      +++|||+|.|.-+..|+=  -...++-++...- ..++..+..+ ++-  .++.+.+|. +-...+||+|++.. +..+ 
T Consensus        51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~-~~~~~~fd~v~aRA-v~~l-  127 (184)
T PF02527_consen   51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLSNVEVINGRAEE-PEYRESFDVVTARA-VAPL-  127 (184)
T ss_dssp             EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-SSEEEEES-HHH-TTTTT-EEEEEEES-SSSH-
T ss_pred             eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCCCEEEEEeeecc-cccCCCccEEEeeh-hcCH-
Confidence            699999999986665543  2456655553311 1233444433 332  234444666 67789999999744 4322 


Q ss_pred             ChhcHHHHHHHHHhcccCCcEEEEeeccCChhhHHHHHHHHHHcCceeeE
Q 046488          402 DFVLLDFILYDWDRVLRPGGLLWIDSFFCAKEDMNDYLEVFKMLKYKKHK  451 (480)
Q Consensus       402 d~~~l~~~L~EI~RVLKPGG~fiI~~f~~~~edL~~~~~~l~~lGfkkl~  451 (480)
                           ..++.-+.+.|||||.+++.--....++++.....++..+.+...
T Consensus       128 -----~~l~~~~~~~l~~~G~~l~~KG~~~~~El~~~~~~~~~~~~~~~~  172 (184)
T PF02527_consen  128 -----DKLLELARPLLKPGGRLLAYKGPDAEEELEEAKKAWKKLGLKVLS  172 (184)
T ss_dssp             -----HHHHHHHGGGEEEEEEEEEEESS--HHHHHTHHHHHHCCCEEEEE
T ss_pred             -----HHHHHHHHHhcCCCCEEEEEcCCChHHHHHHHHhHHHHhCCEEee
Confidence                 357888889999999988753333345555556666666655443

Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.

>PRK00536 speE spermidine synthase; Provisional

Probab=96.58  E-value=0.021  Score=57.69  Aligned_cols=109  Identities=11%  Similarity=-0.025  Sum_probs=66.0

Q ss_pred             CCCCeEEEECCCCcHHHHHHhhCCCEEEEEecCCChhHHHHHHHh-------C----CCCeeeecccCCCCCCCccchhe
Q 046488          324 GEIRIGLDFSIGTGTFAARMREFNVTLVSAIINLGAPFNEMIALR-------G----LVPLYITINQRVPFFDNTLDLIH  392 (480)
Q Consensus       324 g~iR~VLDVGCGtG~fAa~Lae~gV~Vv~vd~d~~~~~~~~iA~r-------g----lip~~~~~ae~LPFpd~SFDlV~  392 (480)
                      ++.++||=||.|-|..+..+.++.-.++-+++|   +.....+++       +    .+.++.. ..  .-..++||+|+
T Consensus        71 ~~pk~VLIiGGGDGg~~REvLkh~~~v~mVeID---~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-~~--~~~~~~fDVII  144 (262)
T PRK00536         71 KELKEVLIVDGFDLELAHQLFKYDTHVDFVQAD---EKILDSFISFFPHFHEVKNNKNFTHAKQ-LL--DLDIKKYDLII  144 (262)
T ss_pred             CCCCeEEEEcCCchHHHHHHHCcCCeeEEEECC---HHHHHHHHHHCHHHHHhhcCCCEEEeeh-hh--hccCCcCCEEE
Confidence            456899999999999999999985455555555   222222222       1    1111111 11  11247899999


Q ss_pred             ecccccCccChhcHHHHHHHHHhcccCCcEEEEee---ccCChhhHHHHHHHHHHcCce
Q 046488          393 TTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDS---FFCAKEDMNDYLEVFKMLKYK  448 (480)
Q Consensus       393 ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~---f~~~~edL~~~~~~l~~lGfk  448 (480)
                      .....    +    ..++..++|.|+|||.++...   |+ ..+....+...++. .|.
T Consensus       145 vDs~~----~----~~fy~~~~~~L~~~Gi~v~Qs~sp~~-~~~~~~~i~~~l~~-~F~  193 (262)
T PRK00536        145 CLQEP----D----IHKIDGLKRMLKEDGVFISVAKHPLL-EHVSMQNALKNMGD-FFS  193 (262)
T ss_pred             EcCCC----C----hHHHHHHHHhcCCCcEEEECCCCccc-CHHHHHHHHHHHHh-hCC
Confidence            76431    2    247899999999999988852   33 23334444444444 355

>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=96.55  E-value=0.018  Score=55.81  Aligned_cols=124  Identities=16%  Similarity=0.204  Sum_probs=70.7

Q ss_pred             CCCCCCCeEEEECCCCcHHHHHHhhC---CCEEEEEecCCChh-HHHHHHHhCC--CCeeeec-ccCCCCCCCccchhee
Q 046488          321 IKPGEIRIGLDFSIGTGTFAARMREF---NVTLVSAIINLGAP-FNEMIALRGL--VPLYITI-NQRVPFFDNTLDLIHT  393 (480)
Q Consensus       321 l~~g~iR~VLDVGCGtG~fAa~Lae~---gV~Vv~vd~d~~~~-~~~~iA~rgl--ip~~~~~-ae~LPFpd~SFDlV~s  393 (480)
                      ++......+||||||+|..+..|++.   ++..+.+|++..+- .-..-|+...  +..+..+ ...+  ..++.|+++.
T Consensus        39 L~~~~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~~~~V~tdl~~~l--~~~~VDvLvf  116 (209)
T KOG3191|consen   39 LKGHNPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVHIDVVRTDLLSGL--RNESVDVLVF  116 (209)
T ss_pred             HhhcCceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCccceeehhHHhhh--ccCCccEEEE
Confidence            33333558999999999999998875   45667777764221 1112233332  2333222 2212  1266666654


Q ss_pred             ccccc--------------Ccc----ChhcHHHHHHHHHhcccCCcEEEEeeccCChhhHHHHHHHHHHcCce
Q 046488          394 TRFLD--------------GWI----DFVLLDFILYDWDRVLRPGGLLWIDSFFCAKEDMNDYLEVFKMLKYK  448 (480)
Q Consensus       394 s~vL~--------------h~~----d~~~l~~~L~EI~RVLKPGG~fiI~~f~~~~edL~~~~~~l~~lGfk  448 (480)
                      +--..              -|.    ....+..++..+..+|-|.|.|++.......  .+++..+++..||.
T Consensus       117 NPPYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N~--p~ei~k~l~~~g~~  187 (209)
T KOG3191|consen  117 NPPYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRANK--PKEILKILEKKGYG  187 (209)
T ss_pred             CCCcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhhcC--HHHHHHHHhhcccc
Confidence            32111              121    1222466888888999999999986543332  34555677787775

>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]

Probab=96.46  E-value=0.0016  Score=64.01  Aligned_cols=134  Identities=22%  Similarity=0.291  Sum_probs=83.2

Q ss_pred             HHhcCCC---CC-CCCeEEEECCCCcHHHHHHhhCCCEEEEEecCCChhHHHHHHHhCCCCeeeecccCCCCCCCccchh
Q 046488          316 PEVLDIK---PG-EIRIGLDFSIGTGTFAARMREFNVTLVSAIINLGAPFNEMIALRGLVPLYITINQRVPFFDNTLDLI  391 (480)
Q Consensus       316 ~~vL~l~---~g-~iR~VLDVGCGtG~fAa~Lae~gV~Vv~vd~d~~~~~~~~iA~rglip~~~~~ae~LPFpd~SFDlV  391 (480)
                      .++|.+.   ++ +..++||+|+|.|..+..++..--.|.++.++  ..|..+...++. .+ ++..+ .---+=.||+|
T Consensus        99 ~klL~i~~p~w~~~~~~lLDlGAGdGeit~~m~p~feevyATElS--~tMr~rL~kk~y-nV-l~~~e-w~~t~~k~dli  173 (288)
T KOG3987|consen   99 RKLLVIGGPAWGQEPVTLLDLGAGDGEITLRMAPTFEEVYATELS--WTMRDRLKKKNY-NV-LTEIE-WLQTDVKLDLI  173 (288)
T ss_pred             HHHHhcCCCccCCCCeeEEeccCCCcchhhhhcchHHHHHHHHhh--HHHHHHHhhcCC-ce-eeehh-hhhcCceeehH
Confidence            3555543   22 34689999999999999988753333333322  234444443332 22 12111 11124569999


Q ss_pred             eecccccCccChhcHHHHHHHHHhcccC-CcEEEEe------e---------ccCCh-----------hhHHHHHHHHHH
Q 046488          392 HTTRFLDGWIDFVLLDFILYDWDRVLRP-GGLLWID------S---------FFCAK-----------EDMNDYLEVFKM  444 (480)
Q Consensus       392 ~ss~vL~h~~d~~~l~~~L~EI~RVLKP-GG~fiI~------~---------f~~~~-----------edL~~~~~~l~~  444 (480)
                      .|-..|...-++   .++|.+|+-||+| .|+++++      +         +.++.           ++...+.++++.
T Consensus       174 ~clNlLDRc~~p---~kLL~Di~~vl~psngrvivaLVLP~~hYVE~N~~g~~~rPdn~Le~~Gr~~ee~v~~~~e~lr~  250 (288)
T KOG3987|consen  174 LCLNLLDRCFDP---FKLLEDIHLVLAPSNGRVIVALVLPYMHYVETNTSGLPLRPDNLLENNGRSFEEEVARFMELLRN  250 (288)
T ss_pred             HHHHHHHhhcCh---HHHHHHHHHHhccCCCcEEEEEEecccceeecCCCCCcCCchHHHHhcCccHHHHHHHHHHHHHh
Confidence            998877655555   4699999999999 9998875      1         11221           223457788999


Q ss_pred             cCceeeEEEEeec
Q 046488          445 LKYKKHKWVVVPK  457 (480)
Q Consensus       445 lGfkkl~W~~~~k  457 (480)
                      .||..-.|...+-
T Consensus       251 ~g~~veawTrlPY  263 (288)
T KOG3987|consen  251 CGYRVEAWTRLPY  263 (288)
T ss_pred             cCchhhhhhcCCe
Confidence            9998777866543

>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]

Probab=96.33  E-value=0.058  Score=53.57  Aligned_cols=143  Identities=15%  Similarity=0.184  Sum_probs=76.4

Q ss_pred             cCCCCCCCCeEEEECCCCcHHHHHHhhC-C--CEEEEEecCCChh---HHHHHHHhCC--CCeeeeccc-C--CCCCCCc
Q 046488          319 LDIKPGEIRIGLDFSIGTGTFAARMREF-N--VTLVSAIINLGAP---FNEMIALRGL--VPLYITINQ-R--VPFFDNT  387 (480)
Q Consensus       319 L~l~~g~iR~VLDVGCGtG~fAa~Lae~-g--V~Vv~vd~d~~~~---~~~~iA~rgl--ip~~~~~ae-~--LPFpd~S  387 (480)
                      +.+++|.  +||-+|..+|+...++++- |  -.|.++..+  +.   .+...|+++.  +|. +.++. .  ...-=+.
T Consensus        69 ~~ik~gs--kVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs--~r~~rdL~~la~~R~NIiPI-l~DAr~P~~Y~~lv~~  143 (229)
T PF01269_consen   69 IPIKPGS--KVLYLGAASGTTVSHVSDIVGPDGVVYAVEFS--PRSMRDLLNLAKKRPNIIPI-LEDARHPEKYRMLVEM  143 (229)
T ss_dssp             -S--TT---EEEEETTTTSHHHHHHHHHHTTTSEEEEEESS--HHHHHHHHHHHHHSTTEEEE-ES-TTSGGGGTTTS--
T ss_pred             cCCCCCC--EEEEecccCCCccchhhhccCCCCcEEEEEec--chhHHHHHHHhccCCceeee-eccCCChHHhhccccc
Confidence            4566775  8999999999999988874 2  134444432  22   2234555542  343 33322 1  1111237


Q ss_pred             cchheecccccCccChhcHHHHHHHHHhcccCCcEEEEee------ccCChhh-HHHHHHHHHHcCceeeEEEEeeccCC
Q 046488          388 LDLIHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDS------FFCAKED-MNDYLEVFKMLKYKKHKWVVVPKRDK  460 (480)
Q Consensus       388 FDlV~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~------f~~~~ed-L~~~~~~l~~lGfkkl~W~~~~k~d~  460 (480)
                      +|+|++.-+     .+++.+.++..+...||+||.+++.-      -....++ ...-.+.++..||+.+.-.....-  
T Consensus       144 VDvI~~DVa-----Qp~Qa~I~~~Na~~fLk~gG~~~i~iKa~siD~t~~p~~vf~~e~~~L~~~~~~~~e~i~LePy--  216 (229)
T PF01269_consen  144 VDVIFQDVA-----QPDQARIAALNARHFLKPGGHLIISIKARSIDSTADPEEVFAEEVKKLKEEGFKPLEQITLEPY--  216 (229)
T ss_dssp             EEEEEEE-S-----STTHHHHHHHHHHHHEEEEEEEEEEEEHHHH-SSSSHHHHHHHHHHHHHCTTCEEEEEEE-TTT--
T ss_pred             ccEEEecCC-----ChHHHHHHHHHHHhhccCCcEEEEEEecCcccCcCCHHHHHHHHHHHHHHcCCChheEeccCCC--
Confidence            888886432     34444678888999999999998861      1222222 233445666667876654333222  


Q ss_pred             CCcceeEEEEEEe
Q 046488          461 DDREVFFSAVLEK  473 (480)
Q Consensus       461 ~~~E~~lsav~qK  473 (480)
                      .++-..+.+.++|
T Consensus       217 ~~dH~~vv~~y~~  229 (229)
T PF01269_consen  217 ERDHAMVVGRYRK  229 (229)
T ss_dssp             STTEEEEEEEE--
T ss_pred             CCCcEEEEEEecC
Confidence            2355555666665

It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....

>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family

Probab=96.33  E-value=0.007  Score=58.78  Aligned_cols=94  Identities=19%  Similarity=0.245  Sum_probs=55.3

Q ss_pred             CCCCCCCeEEEECCCCcHHHHHHhh--CCCEEEEEecCCCh-hHHH-HHHHhCC---CCeeeecccCCCCCCCccchhee
Q 046488          321 IKPGEIRIGLDFSIGTGTFAARMRE--FNVTLVSAIINLGA-PFNE-MIALRGL---VPLYITINQRVPFFDNTLDLIHT  393 (480)
Q Consensus       321 l~~g~iR~VLDVGCGtG~fAa~Lae--~gV~Vv~vd~d~~~-~~~~-~iA~rgl---ip~~~~~ae~LPFpd~SFDlV~s  393 (480)
                      +++++  +|||+-||.|.|+..+++  ++..+++.+++..+ ..+. .+...+.   +..+.+++..++- .+.||-|++
T Consensus        99 v~~~e--~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~-~~~~drvim  175 (200)
T PF02475_consen   99 VKPGE--VVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLP-EGKFDRVIM  175 (200)
T ss_dssp             --TT---EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG----TT-EEEEEE
T ss_pred             CCcce--EEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcC-ccccCEEEE
Confidence            45554  899999999999999998  57789998877321 2222 2333332   2334566666554 889996665


Q ss_pred             cccccCccChhcHHHHHHHHHhcccCCcEEE
Q 046488          394 TRFLDGWIDFVLLDFILYDWDRVLRPGGLLW  424 (480)
Q Consensus       394 s~vL~h~~d~~~l~~~L~EI~RVLKPGG~fi  424 (480)
                           +++...  ..+|.++.+.+|+||.+-
T Consensus       176 -----~lp~~~--~~fl~~~~~~~~~~g~ih  199 (200)
T PF02475_consen  176 -----NLPESS--LEFLDAALSLLKEGGIIH  199 (200)
T ss_dssp             -------TSSG--GGGHHHHHHHEEEEEEEE
T ss_pred             -----CChHHH--HHHHHHHHHHhcCCcEEE
Confidence                 333322  248899999999999753

Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.

>TIGR00095 RNA methyltransferase, RsmD family

Probab=96.28  E-value=0.016  Score=55.28  Aligned_cols=97  Identities=13%  Similarity=0.029  Sum_probs=52.2

Q ss_pred             CeEEEECCCCcHHHHHHhhCCC-EEEEEecCCChh--HHHHHHHhCC---CCeeeecc-cCCC-C-CC-Cccchheeccc
Q 046488          327 RIGLDFSIGTGTFAARMREFNV-TLVSAIINLGAP--FNEMIALRGL---VPLYITIN-QRVP-F-FD-NTLDLIHTTRF  396 (480)
Q Consensus       327 R~VLDVGCGtG~fAa~Lae~gV-~Vv~vd~d~~~~--~~~~iA~rgl---ip~~~~~a-e~LP-F-pd-~SFDlV~ss~v  396 (480)
                      .+|||++||+|.++..++++|. .++.++.+..+.  ....+...+.   +.++.+++ ..+. + .. ..||+|+..=-
T Consensus        51 ~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~DPP  130 (189)
T TIGR00095        51 AHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYLDPP  130 (189)
T ss_pred             CEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEECcC
Confidence            4799999999999999999986 567766553211  1112222222   22333333 2222 1 12 24787775311


Q ss_pred             ccCccChhcHHHHHHHH--HhcccCCcEEEEee
Q 046488          397 LDGWIDFVLLDFILYDW--DRVLRPGGLLWIDS  427 (480)
Q Consensus       397 L~h~~d~~~l~~~L~EI--~RVLKPGG~fiI~~  427 (480)
                      +..    .....++.-+  ...|+++|.+++-+
T Consensus       131 y~~----~~~~~~l~~l~~~~~l~~~~iiv~E~  159 (189)
T TIGR00095       131 FFN----GALQALLELCENNWILEDTVLIVVEE  159 (189)
T ss_pred             CCC----CcHHHHHHHHHHCCCCCCCeEEEEEe
Confidence            111    1112233333  45799999887743

This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.

>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]

Probab=96.25  E-value=0.18  Score=52.93  Aligned_cols=115  Identities=25%  Similarity=0.242  Sum_probs=67.4

Q ss_pred             hhhhHHHhcCCCCCCCCeEEEECCCCcHHHHHHhhC----CCEEEEEecCCC--hhHHHHHHHhCCCC--eeeecccCCC
Q 046488          311 ADFLIPEVLDIKPGEIRIGLDFSIGTGTFAARMREF----NVTLVSAIINLG--APFNEMIALRGLVP--LYITINQRVP  382 (480)
Q Consensus       311 ad~~I~~vL~l~~g~iR~VLDVGCGtG~fAa~Lae~----gV~Vv~vd~d~~--~~~~~~iA~rglip--~~~~~ae~LP  382 (480)
                      +..+...+|+..+|+  +|||+.++.|+=+.++++.    +..|+++|.+..  ....+++.+-|..+  ....++..++
T Consensus       144 sS~l~a~~L~p~pge--~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~  221 (355)
T COG0144         144 ASQLPALVLDPKPGE--RVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLA  221 (355)
T ss_pred             HHHHHHHHcCCCCcC--EEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEeccccccc
Confidence            344556788877775  8999999999877777664    455667665421  11222333334333  2233333333


Q ss_pred             ---CCCCccchhee------cccccCccC-------h------hcHHHHHHHHHhcccCCcEEEEee
Q 046488          383 ---FFDNTLDLIHT------TRFLDGWID-------F------VLLDFILYDWDRVLRPGGLLWIDS  427 (480)
Q Consensus       383 ---Fpd~SFDlV~s------s~vL~h~~d-------~------~~l~~~L~EI~RVLKPGG~fiI~~  427 (480)
                         .....||.|..      ..++..-++       .      ..-..+|....++|||||.++.+.
T Consensus       222 ~~~~~~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYST  288 (355)
T COG0144         222 ELLPGGEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYST  288 (355)
T ss_pred             ccccccCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEc
Confidence               22235999984      233321111       0      011458899999999999999874

>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional

Probab=96.24  E-value=0.0082  Score=62.95  Aligned_cols=84  Identities=10%  Similarity=0.023  Sum_probs=55.7

Q ss_pred             CeEEEECCCCcHHHHHHhhCCCEEEEEecCCChhHHHHHHHhCCCCeeeecccCCCCCCCccchheecccccCccChhcH
Q 046488          327 RIGLDFSIGTGTFAARMREFNVTLVSAIINLGAPFNEMIALRGLVPLYITINQRVPFFDNTLDLIHTTRFLDGWIDFVLL  406 (480)
Q Consensus       327 R~VLDVGCGtG~fAa~Lae~gV~Vv~vd~d~~~~~~~~iA~rglip~~~~~ae~LPFpd~SFDlV~ss~vL~h~~d~~~l  406 (480)
                      .++||+||++|+|+..|.++|..|+++|..   ++...+...+.+..+..+.-++.-+.+.+|+|+|..+-    .+.  
T Consensus       213 ~~vlDLGAsPGGWT~~L~~rG~~V~AVD~g---~l~~~L~~~~~V~h~~~d~fr~~p~~~~vDwvVcDmve----~P~--  283 (357)
T PRK11760        213 MRAVDLGAAPGGWTYQLVRRGMFVTAVDNG---PMAQSLMDTGQVEHLRADGFKFRPPRKNVDWLVCDMVE----KPA--  283 (357)
T ss_pred             CEEEEeCCCCcHHHHHHHHcCCEEEEEech---hcCHhhhCCCCEEEEeccCcccCCCCCCCCEEEEeccc----CHH--
Confidence            489999999999999999999999998844   33334445555555554433322127789999997653    332  


Q ss_pred             HHHHHHHHhcccCC
Q 046488          407 DFILYDWDRVLRPG  420 (480)
Q Consensus       407 ~~~L~EI~RVLKPG  420 (480)
                       .++.-|.+-|..|
T Consensus       284 -rva~lm~~Wl~~g  296 (357)
T PRK11760        284 -RVAELMAQWLVNG  296 (357)
T ss_pred             -HHHHHHHHHHhcC
Confidence             3445555555444

>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.19  E-value=0.015  Score=57.85  Aligned_cols=106  Identities=19%  Similarity=0.190  Sum_probs=66.8

Q ss_pred             hHHHhcCCCCCCCCeEEEECCCCcHHHHHHhhC---CCEEEEEecCCCh--hHHHHHHHhCC---CCeeeec-ccCCC--
Q 046488          314 LIPEVLDIKPGEIRIGLDFSIGTGTFAARMREF---NVTLVSAIINLGA--PFNEMIALRGL---VPLYITI-NQRVP--  382 (480)
Q Consensus       314 ~I~~vL~l~~g~iR~VLDVGCGtG~fAa~Lae~---gV~Vv~vd~d~~~--~~~~~iA~rgl---ip~~~~~-ae~LP--  382 (480)
                      ++..++.+-..  +++||||.=||.-+..+|..   +-.+++++++...  -..+.+...|.   +.++++. ++.|+  
T Consensus        64 fl~~li~~~~a--k~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l  141 (237)
T KOG1663|consen   64 FLQMLIRLLNA--KRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDEL  141 (237)
T ss_pred             HHHHHHHHhCC--ceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHH
Confidence            44445554333  48999998888765555432   4567777766321  12233344443   3444443 22221  


Q ss_pred             ---CCCCccchheecccccCccChhcHHHHHHHHHhcccCCcEEEEee
Q 046488          383 ---FFDNTLDLIHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDS  427 (480)
Q Consensus       383 ---Fpd~SFDlV~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~  427 (480)
                         ...++||+++    +.+|.+.-  ...+.+.-|.||+||.++++.
T Consensus       142 ~~~~~~~tfDfaF----vDadK~nY--~~y~e~~l~Llr~GGvi~~DN  183 (237)
T KOG1663|consen  142 LADGESGTFDFAF----VDADKDNY--SNYYERLLRLLRVGGVIVVDN  183 (237)
T ss_pred             HhcCCCCceeEEE----EccchHHH--HHHHHHHHhhcccccEEEEec
Confidence               3689999998    56676654  468999999999999999985

>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional

Probab=96.17  E-value=0.01  Score=62.86  Aligned_cols=93  Identities=19%  Similarity=0.172  Sum_probs=56.5

Q ss_pred             CeEEEECCCCcHHHHHHhhC-CC-EEEEEecCCChh--HHHHHHHhCCC--CeeeecccCCCCCCCccchheecccccCc
Q 046488          327 RIGLDFSIGTGTFAARMREF-NV-TLVSAIINLGAP--FNEMIALRGLV--PLYITINQRVPFFDNTLDLIHTTRFLDGW  400 (480)
Q Consensus       327 R~VLDVGCGtG~fAa~Lae~-gV-~Vv~vd~d~~~~--~~~~iA~rgli--p~~~~~ae~LPFpd~SFDlV~ss~vL~h~  400 (480)
                      .+|||++||+|.++..++.. ++ .|++++.+..+.  +...+...+.-  .+..+++..+....+.||+|...    ..
T Consensus        59 ~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~~~~fD~V~lD----P~  134 (382)
T PRK04338         59 ESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHEERKFDVVDID----PF  134 (382)
T ss_pred             CEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhhcCCCCEEEEC----CC
Confidence            37999999999999999764 43 677777653211  11122222321  13344444332114679999863    11


Q ss_pred             cChhcHHHHHHHHHhcccCCcEEEEe
Q 046488          401 IDFVLLDFILYDWDRVLRPGGLLWID  426 (480)
Q Consensus       401 ~d~~~l~~~L~EI~RVLKPGG~fiI~  426 (480)
                      ..+   ..++....+.++|||+++++
T Consensus       135 Gs~---~~~l~~al~~~~~~gilyvS  157 (382)
T PRK04338        135 GSP---APFLDSAIRSVKRGGLLCVT  157 (382)
T ss_pred             CCc---HHHHHHHHHHhcCCCEEEEE
Confidence            222   24677778889999999997

>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase

Probab=96.15  E-value=0.013  Score=55.40  Aligned_cols=99  Identities=21%  Similarity=0.234  Sum_probs=56.2

Q ss_pred             CeEEEECCCCcHHHHHHhh--CCCE---------EEEEecCCChh--HHHHHHHhCC---CCeeeecccCCCCCCCccch
Q 046488          327 RIGLDFSIGTGTFAARMRE--FNVT---------LVSAIINLGAP--FNEMIALRGL---VPLYITINQRVPFFDNTLDL  390 (480)
Q Consensus       327 R~VLDVGCGtG~fAa~Lae--~gV~---------Vv~vd~d~~~~--~~~~iA~rgl---ip~~~~~ae~LPFpd~SFDl  390 (480)
                      ..|||-=||+|++....+.  .++.         +++.|.+..+-  +...+...+.   +.+...++..+|+.++++|.
T Consensus        30 ~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D~~~l~~~~~~~d~  109 (179)
T PF01170_consen   30 DVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQWDARELPLPDGSVDA  109 (179)
T ss_dssp             S-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE--GGGGGGTTSBSCE
T ss_pred             CEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEecchhhcccccCCCCE
Confidence            4899999999999865543  3444         67777663211  1112222222   23334568899998999999


Q ss_pred             heecccccC-ccC----hhcHHHHHHHHHhcccCCcEEEE
Q 046488          391 IHTTRFLDG-WID----FVLLDFILYDWDRVLRPGGLLWI  425 (480)
Q Consensus       391 V~ss~vL~h-~~d----~~~l~~~L~EI~RVLKPGG~fiI  425 (480)
                      |++.-=.-. ...    ......++.++.|+|+|...+++
T Consensus       110 IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~~~v~l~  149 (179)
T PF01170_consen  110 IVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKPRAVFLT  149 (179)
T ss_dssp             EEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTTCEEEEE
T ss_pred             EEECcchhhhccCHHHHHHHHHHHHHHHHHHCCCCEEEEE
Confidence            998621110 011    11124578999999999444444

It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.

>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]

Probab=96.14  E-value=0.0087  Score=60.43  Aligned_cols=88  Identities=13%  Similarity=0.163  Sum_probs=58.2

Q ss_pred             cccccccccccCCCCCCchhhhhHHHhc---CCCCCCCCeEEEECCCCcHHHHHHhhCCCEEEEEecCCChhHHHHHHH-
Q 046488          292 HEMPRWIKNVDIDPITNLTADFLIPEVL---DIKPGEIRIGLDFSIGTGTFAARMREFNVTLVSAIINLGAPFNEMIAL-  367 (480)
Q Consensus       292 k~~q~W~~~~gf~~~~~~~ad~~I~~vL---~l~~g~iR~VLDVGCGtG~fAa~Lae~gV~Vv~vd~d~~~~~~~~iA~-  367 (480)
                      +-.|+|+....           .++.++   ++.++  .+||+||+|.|.++..|++++..++++.+|.  ........ 
T Consensus         7 ~~GQnFL~d~~-----------v~~kIv~~a~~~~~--d~VlEIGpG~GaLT~~Ll~~~~~v~aiEiD~--~l~~~L~~~   71 (259)
T COG0030           7 RLGQNFLIDKN-----------VIDKIVEAANISPG--DNVLEIGPGLGALTEPLLERAARVTAIEIDR--RLAEVLKER   71 (259)
T ss_pred             CcccccccCHH-----------HHHHHHHhcCCCCC--CeEEEECCCCCHHHHHHHhhcCeEEEEEeCH--HHHHHHHHh
Confidence            45677776431           234333   44443  4899999999999999999988888888773  22222222 


Q ss_pred             ---hCCCCeeeecccCCCCCCC-ccchheec
Q 046488          368 ---RGLVPLYITINQRVPFFDN-TLDLIHTT  394 (480)
Q Consensus       368 ---rglip~~~~~ae~LPFpd~-SFDlV~ss  394 (480)
                         ...+.++.+++-..+|++. .++.|+++
T Consensus        72 ~~~~~n~~vi~~DaLk~d~~~l~~~~~vVaN  102 (259)
T COG0030          72 FAPYDNLTVINGDALKFDFPSLAQPYKVVAN  102 (259)
T ss_pred             cccccceEEEeCchhcCcchhhcCCCEEEEc
Confidence               2335566777777777665 57777765

>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]

Probab=96.09  E-value=0.044  Score=55.99  Aligned_cols=115  Identities=16%  Similarity=0.120  Sum_probs=67.9

Q ss_pred             CCCCeEEEECCCCcHHHHHHhhCC--CEEEEEecCCChhHHHHHHHhCC-----------CCeeeecc-cCCCCCCCccc
Q 046488          324 GEIRIGLDFSIGTGTFAARMREFN--VTLVSAIINLGAPFNEMIALRGL-----------VPLYITIN-QRVPFFDNTLD  389 (480)
Q Consensus       324 g~iR~VLDVGCGtG~fAa~Lae~g--V~Vv~vd~d~~~~~~~~iA~rgl-----------ip~~~~~a-e~LPFpd~SFD  389 (480)
                      ++.++||=||.|.|+.+..+.+++  -.++.+++|   +....++++-.           +.+.++++ +-+.-..++||
T Consensus        75 ~~pk~VLiiGgGdG~tlRevlkh~~ve~i~~VEID---~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fD  151 (282)
T COG0421          75 PNPKRVLIIGGGDGGTLREVLKHLPVERITMVEID---PAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFD  151 (282)
T ss_pred             CCCCeEEEECCCccHHHHHHHhcCCcceEEEEEcC---HHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCC
Confidence            455799999999999999999874  234455554   34344443321           12333431 12222234899


Q ss_pred             hheecccccCccC----hhcHHHHHHHHHhcccCCcEEEEe---eccCChhhHHHHHHHHHHc
Q 046488          390 LIHTTRFLDGWID----FVLLDFILYDWDRVLRPGGLLWID---SFFCAKEDMNDYLEVFKML  445 (480)
Q Consensus       390 lV~ss~vL~h~~d----~~~l~~~L~EI~RVLKPGG~fiI~---~f~~~~edL~~~~~~l~~l  445 (480)
                      +|++... .....    ..  ..++..++|.|+|+|.++..   .|+.. +.+......++++
T Consensus       152 vIi~D~t-dp~gp~~~Lft--~eFy~~~~~~L~~~Gi~v~q~~~~~~~~-~~~~~~~~~~~~v  210 (282)
T COG0421         152 VIIVDST-DPVGPAEALFT--EEFYEGCRRALKEDGIFVAQAGSPFLQD-EEIALAYRNVSRV  210 (282)
T ss_pred             EEEEcCC-CCCCcccccCC--HHHHHHHHHhcCCCcEEEEecCCcccch-HHHHHHHHHHHhh
Confidence            9997432 22111    01  45999999999999998886   34444 3333333344443

>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated

Probab=96.00  E-value=0.036  Score=58.09  Aligned_cols=29  Identities=17%  Similarity=0.222  Sum_probs=25.1

Q ss_pred             eEEEECCCCcHHHHHHhhCCCEEEEEecC
Q 046488          328 IGLDFSIGTGTFAARMREFNVTLVSAIIN  356 (480)
Q Consensus       328 ~VLDVGCGtG~fAa~Lae~gV~Vv~vd~d  356 (480)
                      +|||++||+|.++..+++....+++++.+
T Consensus       209 ~vLDl~~G~G~~sl~la~~~~~v~~vE~~  237 (362)
T PRK05031        209 DLLELYCGNGNFTLALARNFRRVLATEIS  237 (362)
T ss_pred             eEEEEeccccHHHHHHHhhCCEEEEEECC
Confidence            69999999999999999876678888765

>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]

Probab=95.96  E-value=0.061  Score=52.45  Aligned_cols=138  Identities=14%  Similarity=0.070  Sum_probs=72.1

Q ss_pred             CeEEEECCCCcHHHHHHhhC-C--CEEEEEecCCChhHHHHHHHhCCCCee----------eecccCCCCCCCccchhee
Q 046488          327 RIGLDFSIGTGTFAARMREF-N--VTLVSAIINLGAPFNEMIALRGLVPLY----------ITINQRVPFFDNTLDLIHT  393 (480)
Q Consensus       327 R~VLDVGCGtG~fAa~Lae~-g--V~Vv~vd~d~~~~~~~~iA~rglip~~----------~~~ae~LPFpd~SFDlV~s  393 (480)
                      .+|||+||..|+|+....++ +  -.+.++|+-..++      -+|...+.          ....|.|  |++..|+|++
T Consensus        71 ~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~~p------~~Ga~~i~~~dvtdp~~~~ki~e~l--p~r~VdvVlS  142 (232)
T KOG4589|consen   71 DTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHIEP------PEGATIIQGNDVTDPETYRKIFEAL--PNRPVDVVLS  142 (232)
T ss_pred             CEEEEccCCCChHHHHHHHhhCCCceEEEEeeeeccC------CCCcccccccccCCHHHHHHHHHhC--CCCcccEEEe
Confidence            38999999999999988876 2  2355655421111      12211111          1124455  5788999987


Q ss_pred             cccccCc-----cChhcH----HHHHHHHHhcccCCcEEEEeeccCChhhHHHHHHHHHHcCceeeEEEEeeccCCCCcc
Q 046488          394 TRFLDGW-----IDFVLL----DFILYDWDRVLRPGGLLWIDSFFCAKEDMNDYLEVFKMLKYKKHKWVVVPKRDKDDRE  464 (480)
Q Consensus       394 s~vL~h~-----~d~~~l----~~~L~EI~RVLKPGG~fiI~~f~~~~edL~~~~~~l~~lGfkkl~W~~~~k~d~~~~E  464 (480)
                      ... .+-     .|...+    ..++.=..-.++|+|.|+.--|-...+  ..++..+... |++++-....-..++..|
T Consensus       143 DMa-pnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w~g~e~--~~l~r~l~~~-f~~Vk~vKP~Asr~eS~E  218 (232)
T KOG4589|consen  143 DMA-PNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLWDGSEE--ALLQRRLQAV-FTNVKKVKPDASRDESAE  218 (232)
T ss_pred             ccC-CCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEecCCch--HHHHHHHHHH-hhhcEeeCCccccccccc
Confidence            532 111     121100    123333345678999998876654433  2233222221 444432221111125679


Q ss_pred             eeEEEEEEeCCC
Q 046488          465 VFFSAVLEKPPR  476 (480)
Q Consensus       465 ~~lsav~qKP~~  476 (480)
                      .|+.+.=.|+..
T Consensus       219 ~y~v~~~~k~~~  230 (232)
T KOG4589|consen  219 TYLVCLNFKGNV  230 (232)
T ss_pred             eeeeeeeccCcC
Confidence            999887666643

>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]

Probab=95.94  E-value=0.041  Score=52.73  Aligned_cols=106  Identities=17%  Similarity=0.010  Sum_probs=70.2

Q ss_pred             CCCCCCCeEEEECCCCcHHHHHHhhCCCE---EEEEecCCChhHHHHHHHh-CCCCeeeecccCCC-----CCCCccchh
Q 046488          321 IKPGEIRIGLDFSIGTGTFAARMREFNVT---LVSAIINLGAPFNEMIALR-GLVPLYITINQRVP-----FFDNTLDLI  391 (480)
Q Consensus       321 l~~g~iR~VLDVGCGtG~fAa~Lae~gV~---Vv~vd~d~~~~~~~~iA~r-glip~~~~~ae~LP-----Fpd~SFDlV  391 (480)
                      +.+.....||++|.|||-++.++.++|+.   .+.+..  +.++.....+. -.+.++.+++..+-     +.+..||.|
T Consensus        44 I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~--~~dF~~~L~~~~p~~~ii~gda~~l~~~l~e~~gq~~D~v  121 (194)
T COG3963          44 IDPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEY--SPDFVCHLNQLYPGVNIINGDAFDLRTTLGEHKGQFFDSV  121 (194)
T ss_pred             cCcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEe--CHHHHHHHHHhCCCccccccchhhHHHHHhhcCCCeeeeE
Confidence            45555568999999999999999998763   333332  23343332221 12233334433332     678899999


Q ss_pred             eecccccCccChhcHHHHHHHHHhcccCCcEEEEeecc
Q 046488          392 HTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDSFF  429 (480)
Q Consensus       392 ~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~f~  429 (480)
                      +|.--+.+++-... -+++.++.--|++||-++-..+-
T Consensus       122 iS~lPll~~P~~~~-iaile~~~~rl~~gg~lvqftYg  158 (194)
T COG3963         122 ISGLPLLNFPMHRR-IAILESLLYRLPAGGPLVQFTYG  158 (194)
T ss_pred             EeccccccCcHHHH-HHHHHHHHHhcCCCCeEEEEEec
Confidence            99877766664443 45899999999999998876554

>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2

Probab=95.88  E-value=0.18  Score=50.29  Aligned_cols=119  Identities=16%  Similarity=0.080  Sum_probs=68.0

Q ss_pred             CCCeEEEECCCCcHHHHHHhhCC--CEEEEEecCCChhHHHHHHHh-----------CCCCeeeecccC-CCCCCC-ccc
Q 046488          325 EIRIGLDFSIGTGTFAARMREFN--VTLVSAIINLGAPFNEMIALR-----------GLVPLYITINQR-VPFFDN-TLD  389 (480)
Q Consensus       325 ~iR~VLDVGCGtG~fAa~Lae~g--V~Vv~vd~d~~~~~~~~iA~r-----------glip~~~~~ae~-LPFpd~-SFD  389 (480)
                      +.++||=||.|.|..+..+.++.  ..+..+++|   +....++++           ..+.++.+++.. +--..+ .||
T Consensus        76 ~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD---~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yD  152 (246)
T PF01564_consen   76 NPKRVLIIGGGDGGTARELLKHPPVESITVVEID---PEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYD  152 (246)
T ss_dssp             ST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES----HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EE
T ss_pred             CcCceEEEcCCChhhhhhhhhcCCcceEEEEecC---hHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCccc
Confidence            45789999999999999999874  345555554   233333222           123344544211 112233 899


Q ss_pred             hheecccccCccChh--cHHHHHHHHHhcccCCcEEEEee--ccCChhhHHHHHHHHHHcCc
Q 046488          390 LIHTTRFLDGWIDFV--LLDFILYDWDRVLRPGGLLWIDS--FFCAKEDMNDYLEVFKMLKY  447 (480)
Q Consensus       390 lV~ss~vL~h~~d~~--~l~~~L~EI~RVLKPGG~fiI~~--f~~~~edL~~~~~~l~~lGf  447 (480)
                      +|+....- ......  --..+++.+.|.|+|||.+++..  .....+.+..+...++....
T Consensus       153 vIi~D~~d-p~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~~~~~~~~~~~~~i~~tl~~~F~  213 (246)
T PF01564_consen  153 VIIVDLTD-PDGPAPNLFTREFYQLCKRRLKPDGVLVLQAGSPFLHPELFKSILKTLRSVFP  213 (246)
T ss_dssp             EEEEESSS-TTSCGGGGSSHHHHHHHHHHEEEEEEEEEEEEETTTTHHHHHHHHHHHHTTSS
T ss_pred             EEEEeCCC-CCCCcccccCHHHHHHHHhhcCCCcEEEEEccCcccchHHHHHHHHHHHHhCC
Confidence            99974322 211110  01358999999999999988753  33334445556667776643

5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....

>COG4798 Predicted methyltransferase [General function prediction only]

Probab=95.87  E-value=0.038  Score=54.13  Aligned_cols=128  Identities=15%  Similarity=0.129  Sum_probs=69.5

Q ss_pred             CCCCCCCCeEEEECCCCcHHHHHHhhC-CC--EEEEEecCCCh-------hHHHHHHHhCC---CCeeeecccCCCCCCC
Q 046488          320 DIKPGEIRIGLDFSIGTGTFAARMREF-NV--TLVSAIINLGA-------PFNEMIALRGL---VPLYITINQRVPFFDN  386 (480)
Q Consensus       320 ~l~~g~iR~VLDVGCGtG~fAa~Lae~-gV--~Vv~vd~d~~~-------~~~~~iA~rgl---ip~~~~~ae~LPFpd~  386 (480)
                      .+++|.  +|+|+=-|.|.|+.-++.. |.  .|.++.++...       +....++.+..   ...+....-.++ +.+
T Consensus        45 Glkpg~--tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~A~~-~pq  121 (238)
T COG4798          45 GLKPGA--TVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKPLVALG-APQ  121 (238)
T ss_pred             ccCCCC--EEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhhhhhhhCCcccccC-CCC
Confidence            467775  8999999999999988774 22  45566654321       11112222211   112222223343 445


Q ss_pred             ccchheecccccCcc----ChhcHHHHHHHHHhcccCCcEEEEeeccCCh-----hh-------HHHHHHHHHHcCceee
Q 046488          387 TLDLIHTTRFLDGWI----DFVLLDFILYDWDRVLRPGGLLWIDSFFCAK-----ED-------MNDYLEVFKMLKYKKH  450 (480)
Q Consensus       387 SFDlV~ss~vL~h~~----d~~~l~~~L~EI~RVLKPGG~fiI~~f~~~~-----ed-------L~~~~~~l~~lGfkkl  450 (480)
                      ..|++.....-|.+.    .......+..++++.|||||.+.+.+.....     +.       ........+..||+-.
T Consensus       122 ~~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~dH~a~pG~~~~dt~~~~ri~~a~V~a~veaaGFkl~  201 (238)
T COG4798         122 KLDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVEDHRADPGSGLSDTITLHRIDPAVVIAEVEAAGFKLE  201 (238)
T ss_pred             cccccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEeccccCCCChhhhhhhcccChHHHHHHHHhhcceee
Confidence            555555422111110    1223377999999999999998886432211     11       1234566677788743

>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]

Probab=95.78  E-value=0.026  Score=59.15  Aligned_cols=98  Identities=12%  Similarity=0.157  Sum_probs=56.1

Q ss_pred             CCCeEEEECCCCcHHHHHHhhCCC-EEEEEecCCChhHHHHHHHhCCC----CeeeecccCCCCCCCccchheecccccC
Q 046488          325 EIRIGLDFSIGTGTFAARMREFNV-TLVSAIINLGAPFNEMIALRGLV----PLYITINQRVPFFDNTLDLIHTTRFLDG  399 (480)
Q Consensus       325 ~iR~VLDVGCGtG~fAa~Lae~gV-~Vv~vd~d~~~~~~~~iA~rgli----p~~~~~ae~LPFpd~SFDlV~ss~vL~h  399 (480)
                      ..+.|||||||+|.++...+..|. .+.++.-+.-++..++..+.+++    .++-+-.|.+.+| +..|++++--.-.-
T Consensus       177 ~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS~MAqyA~~Lv~~N~~~~rItVI~GKiEdieLP-Ek~DviISEPMG~m  255 (517)
T KOG1500|consen  177 QDKIVLDVGAGSGILSFFAAQAGAKKVYAVEASEMAQYARKLVASNNLADRITVIPGKIEDIELP-EKVDVIISEPMGYM  255 (517)
T ss_pred             CCcEEEEecCCccHHHHHHHHhCcceEEEEehhHHHHHHHHHHhcCCccceEEEccCccccccCc-hhccEEEeccchhh
Confidence            457999999999998888877764 34555433212222222222222    2223446666654 56899997322111


Q ss_pred             ccChhcHHHHHHHHHhcccCCcEEE
Q 046488          400 WIDFVLLDFILYDWDRVLRPGGLLW  424 (480)
Q Consensus       400 ~~d~~~l~~~L~EI~RVLKPGG~fi  424 (480)
                      +.+...++ ...-.+|-|||.|..+
T Consensus       256 L~NERMLE-sYl~Ark~l~P~GkMf  279 (517)
T KOG1500|consen  256 LVNERMLE-SYLHARKWLKPNGKMF  279 (517)
T ss_pred             hhhHHHHH-HHHHHHhhcCCCCccc
Confidence            12222233 4455679999999865

>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=95.67  E-value=0.079  Score=53.50  Aligned_cols=94  Identities=19%  Similarity=0.142  Sum_probs=54.0

Q ss_pred             CCeEEEECCCCcHHHHHHhhC-C--CEEEEEecCCChhHHH---HHHHhCCCCeee----e-c-ccCCCCCCCccchhee
Q 046488          326 IRIGLDFSIGTGTFAARMREF-N--VTLVSAIINLGAPFNE---MIALRGLVPLYI----T-I-NQRVPFFDNTLDLIHT  393 (480)
Q Consensus       326 iR~VLDVGCGtG~fAa~Lae~-g--V~Vv~vd~d~~~~~~~---~iA~rglip~~~----~-~-ae~LPFpd~SFDlV~s  393 (480)
                      .++|||+|||+|.-.-++.+. +  .+++.++.+  ..+..   .+.... .....    . . .+..++...  |+|++
T Consensus        34 P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s--~~~~~l~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~--DLvi~  108 (274)
T PF09243_consen   34 PRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRS--PEMLELAKRLLRAG-PNNRNAEWRRVLYRDFLPFPPD--DLVIA  108 (274)
T ss_pred             CceEEEecCChHHHHHHHHHHhcCceeeeeecCC--HHHHHHHHHHHhcc-cccccchhhhhhhcccccCCCC--cEEEE
Confidence            458999999999866555542 1  234444433  23322   122221 11110    1 1 223444333  99999


Q ss_pred             cccccCccChhcHHHHHHHHHhcccCCcEEEEee
Q 046488          394 TRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDS  427 (480)
Q Consensus       394 s~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~  427 (480)
                      +++|..+.+ .....++..+.+.+.+  +++|.+
T Consensus       109 s~~L~EL~~-~~r~~lv~~LW~~~~~--~LVlVE  139 (274)
T PF09243_consen  109 SYVLNELPS-AARAELVRSLWNKTAP--VLVLVE  139 (274)
T ss_pred             ehhhhcCCc-hHHHHHHHHHHHhccC--cEEEEc
Confidence            999999887 4456677777777766  777653

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation

>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]

Probab=95.20  E-value=0.16  Score=51.95  Aligned_cols=127  Identities=16%  Similarity=0.160  Sum_probs=79.0

Q ss_pred             hHHHhcCCCCCCCCeEEEECCCCcHHHHHHhhC-CC--EEEEEecCC--ChhHHHHHHHhCC---CCeeeec--ccCCCC
Q 046488          314 LIPEVLDIKPGEIRIGLDFSIGTGTFAARMREF-NV--TLVSAIINL--GAPFNEMIALRGL---VPLYITI--NQRVPF  383 (480)
Q Consensus       314 ~I~~vL~l~~g~iR~VLDVGCGtG~fAa~Lae~-gV--~Vv~vd~d~--~~~~~~~iA~rgl---ip~~~~~--ae~LPF  383 (480)
                      +|-.+|++.||.  +|++-|.|+|+++.++++. +.  .+.+++...  ...+.+.+.+.+.   +.+.+.+  ...++-
T Consensus        96 ~I~~~L~i~PGs--vV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF~~  173 (314)
T KOG2915|consen   96 MILSMLEIRPGS--VVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGFLI  173 (314)
T ss_pred             HHHHHhcCCCCC--EEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCccc
Confidence            566789999997  8999999999999888864 22  345565421  1122333333332   2344444  233455


Q ss_pred             CCCccchheecccccCccChhcHHHHHHHHHhcccCCcEEEEeeccCChhhHHHHHHHHHHcCceeeE
Q 046488          384 FDNTLDLIHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDSFFCAKEDMNDYLEVFKMLKYKKHK  451 (480)
Q Consensus       384 pd~SFDlV~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~f~~~~edL~~~~~~l~~lGfkkl~  451 (480)
                      .+..+|+|+.     .++.+.   .++--++.+||-+|. .+..|-.--|++++-.+.+..+||..+.
T Consensus       174 ks~~aDaVFL-----DlPaPw---~AiPha~~~lk~~g~-r~csFSPCIEQvqrtce~l~~~gf~~i~  232 (314)
T KOG2915|consen  174 KSLKADAVFL-----DLPAPW---EAIPHAAKILKDEGG-RLCSFSPCIEQVQRTCEALRSLGFIEIE  232 (314)
T ss_pred             cccccceEEE-----cCCChh---hhhhhhHHHhhhcCc-eEEeccHHHHHHHHHHHHHHhCCCceEE
Confidence            5788998884     233332   256667779999885 2223443446666767888888987653

>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2

Probab=95.01  E-value=0.07  Score=53.88  Aligned_cols=111  Identities=22%  Similarity=0.217  Sum_probs=58.0

Q ss_pred             hHHHhcCCCCCCCCeEEEECCCCcHHHHHHhh---------CCCEEEEEecCCChhHHH--HHHHhCC--C--Ceeeec-
Q 046488          314 LIPEVLDIKPGEIRIGLDFSIGTGTFAARMRE---------FNVTLVSAIINLGAPFNE--MIALRGL--V--PLYITI-  377 (480)
Q Consensus       314 ~I~~vL~l~~g~iR~VLDVGCGtG~fAa~Lae---------~gV~Vv~vd~d~~~~~~~--~iA~rgl--i--p~~~~~-  377 (480)
                      ++.+++...++  .+|+|-.||+|.|...+.+         ....+.|++.+...-...  .+...+.  .  ....++ 
T Consensus        37 l~~~~~~~~~~--~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~d~  114 (311)
T PF02384_consen   37 LMVKLLNPKKG--DSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQGDS  114 (311)
T ss_dssp             HHHHHHTT-TT--EEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES-T
T ss_pred             HHHhhhhcccc--ceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhcccccccccccccc
Confidence            45556654444  4799999999999877765         356778888763221111  1222331  1  122333 


Q ss_pred             ccCCCCC-CCccchheecc--cccCccC----------------hhcHHHHHHHHHhcccCCcEEEEe
Q 046488          378 NQRVPFF-DNTLDLIHTTR--FLDGWID----------------FVLLDFILYDWDRVLRPGGLLWID  426 (480)
Q Consensus       378 ae~LPFp-d~SFDlV~ss~--vL~h~~d----------------~~~l~~~L~EI~RVLKPGG~fiI~  426 (480)
                      .....+. ...||+|++.=  ....|.+                ...-..++..+.+.||+||++.+.
T Consensus       115 l~~~~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~I  182 (311)
T PF02384_consen  115 LENDKFIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAII  182 (311)
T ss_dssp             TTSHSCTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEE
T ss_pred             ccccccccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEE
Confidence            2222222 57899999852  2111110                001124778899999999997654

1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.

>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]

Probab=94.91  E-value=0.42  Score=47.18  Aligned_cols=118  Identities=11%  Similarity=0.025  Sum_probs=71.8

Q ss_pred             CeEEEECCCCcHHHHHHh--hCCCEEEEEecCC-ChhHHHHHHHhCCCC---eeeecccCCCCCCCccchheecccccCc
Q 046488          327 RIGLDFSIGTGTFAARMR--EFNVTLVSAIINL-GAPFNEMIALRGLVP---LYITINQRVPFFDNTLDLIHTTRFLDGW  400 (480)
Q Consensus       327 R~VLDVGCGtG~fAa~La--e~gV~Vv~vd~d~-~~~~~~~iA~rglip---~~~~~ae~LPFpd~SFDlV~ss~vL~h~  400 (480)
                      .+++|||.|.|.-+..|+  ..+..++-++... -..++.++..+-..+   ++.+-+|.+.-....||+|+|. ++..+
T Consensus        69 ~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~~~~~~~D~vtsR-Ava~L  147 (215)
T COG0357          69 KRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFGQEKKQYDVVTSR-AVASL  147 (215)
T ss_pred             CEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCCCeEEehhhHhhcccccccCcEEEee-hccch
Confidence            589999999998777665  2244444343321 123555555553333   3445566665322229999974 44332


Q ss_pred             cChhcHHHHHHHHHhcccCCcEEEEeeccCChhhHHHHHHHHHHcCceeeE
Q 046488          401 IDFVLLDFILYDWDRVLRPGGLLWIDSFFCAKEDMNDYLEVFKMLKYKKHK  451 (480)
Q Consensus       401 ~d~~~l~~~L~EI~RVLKPGG~fiI~~f~~~~edL~~~~~~l~~lGfkkl~  451 (480)
                            ..++.=....||+||.++...+....+++.+........|+....
T Consensus       148 ------~~l~e~~~pllk~~g~~~~~k~~~~~~e~~e~~~a~~~~~~~~~~  192 (215)
T COG0357         148 ------NVLLELCLPLLKVGGGFLAYKGLAGKDELPEAEKAILPLGGQVEK  192 (215)
T ss_pred             ------HHHHHHHHHhcccCCcchhhhHHhhhhhHHHHHHHHHhhcCcEEE
Confidence                  234555678899999987665565666666666677777766544

>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]

Probab=94.73  E-value=0.043  Score=59.65  Aligned_cols=99  Identities=15%  Similarity=0.203  Sum_probs=66.9

Q ss_pred             eEEEECCCCcHHHHHHhhCCCE-EEEEecCCChhHHHHHHHhC-----CCCeeeecccCCCCCCCccchheecccccCcc
Q 046488          328 IGLDFSIGTGTFAARMREFNVT-LVSAIINLGAPFNEMIALRG-----LVPLYITINQRVPFFDNTLDLIHTTRFLDGWI  401 (480)
Q Consensus       328 ~VLDVGCGtG~fAa~Lae~gV~-Vv~vd~d~~~~~~~~iA~rg-----lip~~~~~ae~LPFpd~SFDlV~ss~vL~h~~  401 (480)
                      ++|-+|||.-.+...+-+-|.. +++++.+  ...-...-.++     .......+...+.|+|+|||+|+--..+++.-
T Consensus        51 ~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S--~V~V~~m~~~~~~~~~~~~~~~~d~~~l~fedESFdiVIdkGtlDal~  128 (482)
T KOG2352|consen   51 KILQLGCGNSELSEHLYKNGFEDITNIDSS--SVVVAAMQVRNAKERPEMQMVEMDMDQLVFEDESFDIVIDKGTLDALF  128 (482)
T ss_pred             eeEeecCCCCHHHHHHHhcCCCCceecccc--HHHHHHHHhccccCCcceEEEEecchhccCCCcceeEEEecCcccccc
Confidence            7999999999999988887653 4455443  22222111111     12223455888999999999999887777654


Q ss_pred             Chh-------cHHHHHHHHHhcccCCcEEEEeec
Q 046488          402 DFV-------LLDFILYDWDRVLRPGGLLWIDSF  428 (480)
Q Consensus       402 d~~-------~l~~~L~EI~RVLKPGG~fiI~~f  428 (480)
                      .++       .....+.|+.|||+|||.++...+
T Consensus       129 ~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svtl  162 (482)
T KOG2352|consen  129 EDEDALLNTAHVSNMLDEVSRVLAPGGKYISVTL  162 (482)
T ss_pred             CCchhhhhhHHhhHHHhhHHHHhccCCEEEEEEe
Confidence            221       124568999999999999876544

>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]

Probab=94.56  E-value=0.1  Score=55.69  Aligned_cols=101  Identities=20%  Similarity=0.049  Sum_probs=64.3

Q ss_pred             CeEEEECCCCcHHHHHHhhCCC-EEEEEecCCCh--hHHHHHHHhCCCC----eeeec-ccCCCC---CCCccchheec-
Q 046488          327 RIGLDFSIGTGTFAARMREFNV-TLVSAIINLGA--PFNEMIALRGLVP----LYITI-NQRVPF---FDNTLDLIHTT-  394 (480)
Q Consensus       327 R~VLDVGCGtG~fAa~Lae~gV-~Vv~vd~d~~~--~~~~~iA~rglip----~~~~~-ae~LPF---pd~SFDlV~ss-  394 (480)
                      ++|||+=|=||.|+.+.+..|. .|+++|++..+  -+.+++...|.-.    ++.++ .+-|..   ....||+|+.. 
T Consensus       219 krvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlIilDP  298 (393)
T COG1092         219 KRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLIILDP  298 (393)
T ss_pred             CeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccEEEECC
Confidence            4899999999999999999888 88898876321  1223444444322    33333 222222   34499999962 


Q ss_pred             --cccc---CccChhcHHHHHHHHHhcccCCcEEEEee
Q 046488          395 --RFLD---GWIDFVLLDFILYDWDRVLRPGGLLWIDS  427 (480)
Q Consensus       395 --~vL~---h~~d~~~l~~~L~EI~RVLKPGG~fiI~~  427 (480)
                        ++=.   -|.-......++....++|+|||.++++.
T Consensus       299 PsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s  336 (393)
T COG1092         299 PSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSS  336 (393)
T ss_pred             cccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEe
Confidence              1110   02111123568899999999999998863

>PRK13699 putative methylase; Provisional

Probab=94.48  E-value=0.078  Score=52.22  Aligned_cols=45  Identities=11%  Similarity=0.123  Sum_probs=31.0

Q ss_pred             HHHHHHHHhcccCCcEEEEeeccCChhhHHHHHHHHHHcCcee---eEEEE
Q 046488          407 DFILYDWDRVLRPGGLLWIDSFFCAKEDMNDYLEVFKMLKYKK---HKWVV  454 (480)
Q Consensus       407 ~~~L~EI~RVLKPGG~fiI~~f~~~~edL~~~~~~l~~lGfkk---l~W~~  454 (480)
                      ...+.|++|||||||.+++..   ....+..+...++..||.-   +-|..
T Consensus        52 ~~~l~E~~RVLKpgg~l~if~---~~~~~~~~~~al~~~GF~l~~~IiW~K   99 (227)
T PRK13699         52 QPACNEMYRVLKKDALMVSFY---GWNRVDRFMAAWKNAGFSVVGHLVFTK   99 (227)
T ss_pred             HHHHHHHHHHcCCCCEEEEEe---ccccHHHHHHHHHHCCCEEeeEEEEEC
Confidence            568999999999999987631   1112344566778889863   45764

>COG2520 Predicted methyltransferase [General function prediction only]

Probab=94.44  E-value=0.69  Score=48.68  Aligned_cols=126  Identities=21%  Similarity=0.114  Sum_probs=81.6

Q ss_pred             CCCCCeEEEECCCCcHHHHHHhhCCCE-EEEEecCCCh-h-HHHHHHHhCC---CCeeeecccCCCCCCCccchheeccc
Q 046488          323 PGEIRIGLDFSIGTGTFAARMREFNVT-LVSAIINLGA-P-FNEMIALRGL---VPLYITINQRVPFFDNTLDLIHTTRF  396 (480)
Q Consensus       323 ~g~iR~VLDVGCGtG~fAa~Lae~gV~-Vv~vd~d~~~-~-~~~~iA~rgl---ip~~~~~ae~LPFpd~SFDlV~ss~v  396 (480)
                      +|+  +|||+=+|.|.|+..++.+|.. |+++++|..+ . ..+.+.+.+.   +..+++++..++..-+.||-|++...
T Consensus       188 ~GE--~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~~~aDrIim~~p  265 (341)
T COG2520         188 EGE--TVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPELGVADRIIMGLP  265 (341)
T ss_pred             CCC--EEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhccccCCEEEeCCC
Confidence            455  8999999999999999998755 8888877422 1 2233444443   33566777777766689998886442


Q ss_pred             ccCccChhcHHHHHHHHHhcccCCcEEEEeeccCChhh----HHHHHHHHHHcCce--eeEEEEeec
Q 046488          397 LDGWIDFVLLDFILYDWDRVLRPGGLLWIDSFFCAKED----MNDYLEVFKMLKYK--KHKWVVVPK  457 (480)
Q Consensus       397 L~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~f~~~~ed----L~~~~~~l~~lGfk--kl~W~~~~k  457 (480)
                           ...  ..++....+.||+||.+.+-.+....+.    .+.+.....+.|++  ...|+...+
T Consensus       266 -----~~a--~~fl~~A~~~~k~~g~iHyy~~~~e~~~~~~~~~~i~~~~~~~~~~~~v~~~r~Vks  325 (341)
T COG2520         266 -----KSA--HEFLPLALELLKDGGIIHYYEFVPEDDIEERPEKRIKSAARKGGYKVEVLKVRRVKS  325 (341)
T ss_pred             -----Ccc--hhhHHHHHHHhhcCcEEEEEeccchhhcccchHHHHHHHHhhccCcceEEEEEEecc
Confidence                 221  3478888999999998766544433331    24456666676652  334544433

>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]

Probab=94.18  E-value=0.18  Score=51.71  Aligned_cols=69  Identities=17%  Similarity=0.148  Sum_probs=46.4

Q ss_pred             CCCCCCCCeEEEECCCCcHHHHHHhhCCCEEEEEecCCChhHHHHHHHhC-CC------CeeeecccCCCCCCCccchhe
Q 046488          320 DIKPGEIRIGLDFSIGTGTFAARMREFNVTLVSAIINLGAPFNEMIALRG-LV------PLYITINQRVPFFDNTLDLIH  392 (480)
Q Consensus       320 ~l~~g~iR~VLDVGCGtG~fAa~Lae~gV~Vv~vd~d~~~~~~~~iA~rg-li------p~~~~~ae~LPFpd~SFDlV~  392 (480)
                      ++++++  .||+||-|||.++..|.+.|..|+++.+|.  .+...+.++. +.      .+.+++  .+-.+.-.||.++
T Consensus        55 ~~k~tD--~VLEvGPGTGnLT~~lLe~~kkVvA~E~Dp--rmvael~krv~gtp~~~kLqV~~gD--~lK~d~P~fd~cV  128 (315)
T KOG0820|consen   55 DLKPTD--VVLEVGPGTGNLTVKLLEAGKKVVAVEIDP--RMVAELEKRVQGTPKSGKLQVLHGD--FLKTDLPRFDGCV  128 (315)
T ss_pred             CCCCCC--EEEEeCCCCCHHHHHHHHhcCeEEEEecCc--HHHHHHHHHhcCCCccceeeEEecc--cccCCCcccceee
Confidence            366665  899999999999999999999999988773  3433444432 22      233343  3333344588888


Q ss_pred             ec
Q 046488          393 TT  394 (480)
Q Consensus       393 ss  394 (480)
                      ++
T Consensus       129 sN  130 (315)
T KOG0820|consen  129 SN  130 (315)
T ss_pred             cc
Confidence            73

>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family

Probab=94.13  E-value=0.7  Score=48.11  Aligned_cols=140  Identities=11%  Similarity=0.101  Sum_probs=76.7

Q ss_pred             eEEEECCCCcHHHHHHhh----C--CCEEEEEecCCChhHHHHHHHh---CCCC-e----eeec----ccCCCC--CCCc
Q 046488          328 IGLDFSIGTGTFAARMRE----F--NVTLVSAIINLGAPFNEMIALR---GLVP-L----YITI----NQRVPF--FDNT  387 (480)
Q Consensus       328 ~VLDVGCGtG~fAa~Lae----~--gV~Vv~vd~d~~~~~~~~iA~r---glip-~----~~~~----ae~LPF--pd~S  387 (480)
                      .++|+|||.|.=+..|.+    .  .+..+.+|++  ..+++..+.+   ...| +    +.++    ...+|-  ....
T Consensus        79 ~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS--~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~~l~~~~~~~~  156 (319)
T TIGR03439        79 MLVELGSGNLRKVGILLEALERQKKSVDYYALDVS--RSELQRTLAELPLGNFSHVRCAGLLGTYDDGLAWLKRPENRSR  156 (319)
T ss_pred             EEEEECCCchHHHHHHHHHHHhcCCCceEEEEECC--HHHHHHHHHhhhhccCCCeEEEEEEecHHHHHhhcccccccCC
Confidence            799999999985444332    2  4566666654  3444332221   2223 1    2222    122322  2334


Q ss_pred             cchhee-cccccCccChhcHHHHHHHHHh-cccCCcEEEEee-ccCChhh----------------HHHHHHHHHHcC--
Q 046488          388 LDLIHT-TRFLDGWIDFVLLDFILYDWDR-VLRPGGLLWIDS-FFCAKED----------------MNDYLEVFKMLK--  446 (480)
Q Consensus       388 FDlV~s-s~vL~h~~d~~~l~~~L~EI~R-VLKPGG~fiI~~-f~~~~ed----------------L~~~~~~l~~lG--  446 (480)
                      ..+++. ...+.++.+.+. ..+|.++.+ .|+|||.|+|.- .....+.                ++-+..+-+.+|  
T Consensus       157 ~r~~~flGSsiGNf~~~ea-~~fL~~~~~~~l~~~d~lLiG~D~~k~~~~l~~AY~d~~gvTa~FnlN~L~~~Nr~Lg~~  235 (319)
T TIGR03439       157 PTTILWLGSSIGNFSRPEA-AAFLAGFLATALSPSDSFLIGLDGCKDPDKVLRAYNDPGGVTRRFVLNGLVHANEILGSE  235 (319)
T ss_pred             ccEEEEeCccccCCCHHHH-HHHHHHHHHhhCCCCCEEEEecCCCCCHHHHHHHhcCCcchhHHHHHHHHHHHHHHhCcc
Confidence            566665 457777766554 669999999 999999998852 1111111                111223333334  


Q ss_pred             -ceeeEEEEeeccCC--CCcceeEEEE
Q 046488          447 -YKKHKWVVVPKRDK--DDREVFFSAV  470 (480)
Q Consensus       447 -fkkl~W~~~~k~d~--~~~E~~lsav  470 (480)
                       |..-.|......+.  .+-|+++.+.
T Consensus       236 ~Fd~~~f~h~a~~n~~~~rie~~l~s~  262 (319)
T TIGR03439       236 AFREEDWEFLGEWDEELGRHEAFYIPK  262 (319)
T ss_pred             ccCHHHcEEEEEEcCCCCeEEEEEEeC
Confidence             55556776655543  4567777653

This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).

>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=93.99  E-value=0.56  Score=47.15  Aligned_cols=143  Identities=16%  Similarity=0.094  Sum_probs=80.8

Q ss_pred             ccccccccccCCCCCCchhhhhHH--HhcCCCCCCCCeEEEECCCCcHHHHHHhhCCC-EEEEEecC--CChhHHHHHHH
Q 046488          293 EMPRWIKNVDIDPITNLTADFLIP--EVLDIKPGEIRIGLDFSIGTGTFAARMREFNV-TLVSAIIN--LGAPFNEMIAL  367 (480)
Q Consensus       293 ~~q~W~~~~gf~~~~~~~ad~~I~--~vL~l~~g~iR~VLDVGCGtG~fAa~Lae~gV-~Vv~vd~d--~~~~~~~~iA~  367 (480)
                      +.+.|+.+.         +-.+..  +..++... .+++||+|.-||+|+..+.++|+ .|+++|..  ..+...   ..
T Consensus        55 ~~~~yVSRG---------~~KL~~ale~F~l~~k-~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~kL---R~  121 (245)
T COG1189          55 EEQPYVSRG---------GLKLEKALEEFELDVK-GKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHWKL---RN  121 (245)
T ss_pred             cCcCccccH---------HHHHHHHHHhcCcCCC-CCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCHhH---hc
Confidence            677887653         222221  23344433 36899999999999999999965 45565543  222221   11


Q ss_pred             hCCCCeeeec-ccCC---CCCCCccchheecccccCccChhcHHHHHHHHHhcccCCcEEEEe---eccCChh-------
Q 046488          368 RGLVPLYITI-NQRV---PFFDNTLDLIHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWID---SFFCAKE-------  433 (480)
Q Consensus       368 rglip~~~~~-ae~L---PFpd~SFDlV~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~---~f~~~~e-------  433 (480)
                      .-.+-.+... +..+   -|.. ..|+++|.-.|...      ..+|..+..+|+|+|-++..   .|...++       
T Consensus       122 d~rV~~~E~tN~r~l~~~~~~~-~~d~~v~DvSFISL------~~iLp~l~~l~~~~~~~v~LvKPQFEagr~~v~kkGv  194 (245)
T COG1189         122 DPRVIVLERTNVRYLTPEDFTE-KPDLIVIDVSFISL------KLILPALLLLLKDGGDLVLLVKPQFEAGREQVGKKGV  194 (245)
T ss_pred             CCcEEEEecCChhhCCHHHccc-CCCeEEEEeehhhH------HHHHHHHHHhcCCCceEEEEecchhhhhhhhcCcCce
Confidence            1111111111 1111   1222 57888886665432      45899999999999998765   1211111       


Q ss_pred             ---------hHHHHHHHHHHcCceeeEEEEe
Q 046488          434 ---------DMNDYLEVFKMLKYKKHKWVVV  455 (480)
Q Consensus       434 ---------dL~~~~~~l~~lGfkkl~W~~~  455 (480)
                               -+..+...+...||+...-...
T Consensus       195 v~d~~~~~~v~~~i~~~~~~~g~~~~gl~~S  225 (245)
T COG1189         195 VRDPKLHAEVLSKIENFAKELGFQVKGLIKS  225 (245)
T ss_pred             ecCcchHHHHHHHHHHHHhhcCcEEeeeEcc
Confidence                     1234567777778876654443

>KOG3201 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.79  E-value=0.031  Score=53.32  Aligned_cols=119  Identities=16%  Similarity=0.108  Sum_probs=70.1

Q ss_pred             CeEEEECCCCcHHHHHHhhCCCEEEEEecCCCh-hHH---HHHHHhCC----CCe-eee---cccCCCCCCCccchheec
Q 046488          327 RIGLDFSIGTGTFAARMREFNVTLVSAIINLGA-PFN---EMIALRGL----VPL-YIT---INQRVPFFDNTLDLIHTT  394 (480)
Q Consensus       327 R~VLDVGCGtG~fAa~Lae~gV~Vv~vd~d~~~-~~~---~~iA~rgl----ip~-~~~---~ae~LPFpd~SFDlV~ss  394 (480)
                      +.||++|.|.-.++..|....+...++-+.++. .+.   +++.-...    -.. .+.   +..+..-..++||+|.|+
T Consensus        31 ~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~eq~tFDiIlaA  110 (201)
T KOG3201|consen   31 RRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQEQHTFDIILAA  110 (201)
T ss_pred             HHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhHHHHhhCcccEEEec
Confidence            679999999877776665432222222222221 221   22222211    111 111   133444567799999999


Q ss_pred             ccccCccChhcHHHHHHHHHhcccCCcEEEEeeccCChhhHHHHHHHHHHcCcee
Q 046488          395 RFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDSFFCAKEDMNDYLEVFKMLKYKK  449 (480)
Q Consensus       395 ~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~f~~~~edL~~~~~~l~~lGfkk  449 (480)
                      .|+-.-..+   +.++.-|.+.|||.|..++..-. ....++.+.+.....||..
T Consensus       111 DClFfdE~h---~sLvdtIk~lL~p~g~Al~fsPR-Rg~sL~kF~de~~~~gf~v  161 (201)
T KOG3201|consen  111 DCLFFDEHH---ESLVDTIKSLLRPSGRALLFSPR-RGQSLQKFLDEVGTVGFTV  161 (201)
T ss_pred             cchhHHHHH---HHHHHHHHHHhCcccceeEecCc-ccchHHHHHHHHHhceeEE
Confidence            998532222   56899999999999997764322 1235778888888888763

>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase

Probab=93.61  E-value=0.13  Score=54.53  Aligned_cols=92  Identities=13%  Similarity=0.058  Sum_probs=57.1

Q ss_pred             eEEEECCCCcHHHHHHhhC--CC-EEEEEecCCChh--HHHHHHHhCC--CCeeeecccC-CCCCCCccchheecccccC
Q 046488          328 IGLDFSIGTGTFAARMREF--NV-TLVSAIINLGAP--FNEMIALRGL--VPLYITINQR-VPFFDNTLDLIHTTRFLDG  399 (480)
Q Consensus       328 ~VLDVGCGtG~fAa~Lae~--gV-~Vv~vd~d~~~~--~~~~iA~rgl--ip~~~~~ae~-LPFpd~SFDlV~ss~vL~h  399 (480)
                      +|||+-||+|..+.+++.+  |+ .|+..+.+..+-  ....+...+.  +.++..++.. +....+.||+|...    .
T Consensus        47 ~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~~~~fDvIdlD----P  122 (374)
T TIGR00308        47 NIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRYRNRKFHVIDID----P  122 (374)
T ss_pred             EEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHHhCCCCCEEEeC----C
Confidence            7999999999999999886  54 566666553211  1112222222  2233333222 22224679999853    2


Q ss_pred             ccChhcHHHHHHHHHhcccCCcEEEEe
Q 046488          400 WIDFVLLDFILYDWDRVLRPGGLLWID  426 (480)
Q Consensus       400 ~~d~~~l~~~L~EI~RVLKPGG~fiI~  426 (480)
                      ...+   ..++..+.+.+++||++.++
T Consensus       123 fGs~---~~fld~al~~~~~~glL~vT  146 (374)
T TIGR00308       123 FGTP---APFVDSAIQASAERGLLLVT  146 (374)
T ss_pred             CCCc---HHHHHHHHHhcccCCEEEEE
Confidence            2232   24899999999999999997

This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.

>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional

Probab=93.40  E-value=0.1  Score=53.67  Aligned_cols=35  Identities=26%  Similarity=0.285  Sum_probs=28.0

Q ss_pred             CCCCCCCCeEEEECCCCcHHHHHHhhC---CCEEEEEecC
Q 046488          320 DIKPGEIRIGLDFSIGTGTFAARMREF---NVTLVSAIIN  356 (480)
Q Consensus       320 ~l~~g~iR~VLDVGCGtG~fAa~Lae~---gV~Vv~vd~d  356 (480)
                      .+.++.  ++||.+||.|+.+..+++.   +..++++|.|
T Consensus        16 ~~~pg~--~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D   53 (296)
T PRK00050         16 AIKPDG--IYVDGTFGGGGHSRAILERLGPKGRLIAIDRD   53 (296)
T ss_pred             CCCCCC--EEEEeCcCChHHHHHHHHhCCCCCEEEEEcCC
Confidence            344553  8999999999999999986   2678888866

>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D

Probab=93.04  E-value=0.03  Score=47.44  Aligned_cols=92  Identities=22%  Similarity=0.157  Sum_probs=33.7

Q ss_pred             EEECCCCcHHHHHHhhC----C-CEEEEEecCCCh-hHHHHHHHhC---CCCeeeec----ccCCCCCCCccchheeccc
Q 046488          330 LDFSIGTGTFAARMREF----N-VTLVSAIINLGA-PFNEMIALRG---LVPLYITI----NQRVPFFDNTLDLIHTTRF  396 (480)
Q Consensus       330 LDVGCGtG~fAa~Lae~----g-V~Vv~vd~d~~~-~~~~~iA~rg---lip~~~~~----ae~LPFpd~SFDlV~ss~v  396 (480)
                      |++|+..|..+..+++.    + ..++++++.... ..+..+...+   .+.++.+.    ...++  ++.||+++.-..
T Consensus         1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~--~~~~dli~iDg~   78 (106)
T PF13578_consen    1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLP--DGPIDLIFIDGD   78 (106)
T ss_dssp             --------------------------EEEESS------------GGG-BTEEEEES-THHHHHHHH--H--EEEEEEES-
T ss_pred             CccccccccccccccccccccccCCEEEEECCCcccccchhhhhcCCCCeEEEEEcCcHHHHHHcC--CCCEEEEEECCC
Confidence            68999999888777653    2 256777765421 1222222222   23333333    22233  689999996442


Q ss_pred             ccCccChhcHHHHHHHHHhcccCCcEEEEee
Q 046488          397 LDGWIDFVLLDFILYDWDRVLRPGGLLWIDS  427 (480)
Q Consensus       397 L~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~  427 (480)
                        |-  .......+..+.+.|+|||.+++.+
T Consensus        79 --H~--~~~~~~dl~~~~~~l~~ggviv~dD  105 (106)
T PF13578_consen   79 --HS--YEAVLRDLENALPRLAPGGVIVFDD  105 (106)
T ss_dssp             ------HHHHHHHHHHHGGGEEEEEEEEEE-
T ss_pred             --CC--HHHHHHHHHHHHHHcCCCeEEEEeC
Confidence              21  1222457888999999999988864

>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family

Probab=92.80  E-value=0.43  Score=52.25  Aligned_cols=21  Identities=19%  Similarity=0.134  Sum_probs=17.4

Q ss_pred             CCeEEEECCCCcHHHHHHhhC
Q 046488          326 IRIGLDFSIGTGTFAARMREF  346 (480)
Q Consensus       326 iR~VLDVGCGtG~fAa~Lae~  346 (480)
                      ..+|||.|||+|.|...++++
T Consensus        32 ~~~ilDP~cGsG~fl~~~~~~   52 (524)
T TIGR02987        32 KTKIIDPCCGDGRLIAALLKK   52 (524)
T ss_pred             ceEEEeCCCCccHHHHHHHHH
Confidence            347999999999998877653

Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.

>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2

Probab=92.80  E-value=1.3  Score=46.48  Aligned_cols=29  Identities=24%  Similarity=0.289  Sum_probs=24.9

Q ss_pred             eEEEECCCCcHHHHHHhhCCCEEEEEecC
Q 046488          328 IGLDFSIGTGTFAARMREFNVTLVSAIIN  356 (480)
Q Consensus       328 ~VLDVGCGtG~fAa~Lae~gV~Vv~vd~d  356 (480)
                      .|||+=||+|+|+..|++..-.|++++.+
T Consensus       199 ~vlDlycG~G~fsl~la~~~~~V~gvE~~  227 (352)
T PF05958_consen  199 DVLDLYCGVGTFSLPLAKKAKKVIGVEIV  227 (352)
T ss_dssp             EEEEES-TTTCCHHHHHCCSSEEEEEES-
T ss_pred             cEEEEeecCCHHHHHHHhhCCeEEEeeCC
Confidence            69999999999999999988889988865

1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.

>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []

Probab=92.77  E-value=0.094  Score=51.14  Aligned_cols=103  Identities=18%  Similarity=0.231  Sum_probs=45.3

Q ss_pred             HhcCCCCCCCCeEEEECCCCcHHHHHHh-hCCCE-EEEEecCCCh-hHHH---HHHHh-----CCCCeeeecccCCCCCC
Q 046488          317 EVLDIKPGEIRIGLDFSIGTGTFAARMR-EFNVT-LVSAIINLGA-PFNE---MIALR-----GLVPLYITINQRVPFFD  385 (480)
Q Consensus       317 ~vL~l~~g~iR~VLDVGCGtG~fAa~La-e~gV~-Vv~vd~d~~~-~~~~---~iA~r-----glip~~~~~ae~LPFpd  385 (480)
                      +.+++.+++  +.+|+|||.|......+ ..++. ++|+.+.... ....   +...+     |.-..-+. ...-.|-+
T Consensus        36 ~~~~l~~~d--vF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~-l~~gdfl~  112 (205)
T PF08123_consen   36 DELNLTPDD--VFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVE-LIHGDFLD  112 (205)
T ss_dssp             HHTT--TT---EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEE-EECS-TTT
T ss_pred             HHhCCCCCC--EEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccce-eeccCccc
Confidence            345565554  89999999999755444 33665 7888865211 1111   00011     11010000 11222222


Q ss_pred             --------CccchheecccccCccChhcHHHHHHHHHhcccCCcEEEEe
Q 046488          386 --------NTLDLIHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWID  426 (480)
Q Consensus       386 --------~SFDlV~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~  426 (480)
                              ..-|+|+++...  + +++ +...|.++..-||||-+++-.
T Consensus       113 ~~~~~~~~s~AdvVf~Nn~~--F-~~~-l~~~L~~~~~~lk~G~~IIs~  157 (205)
T PF08123_consen  113 PDFVKDIWSDADVVFVNNTC--F-DPD-LNLALAELLLELKPGARIIST  157 (205)
T ss_dssp             HHHHHHHGHC-SEEEE--TT--T--HH-HHHHHHHHHTTS-TT-EEEES
T ss_pred             cHhHhhhhcCCCEEEEeccc--c-CHH-HHHHHHHHHhcCCCCCEEEEC
Confidence                    234777775432  1 222 345678888999999886654

H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....

>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e

Probab=92.43  E-value=0.31  Score=48.59  Aligned_cols=74  Identities=15%  Similarity=0.198  Sum_probs=47.7

Q ss_pred             HhcCCCCCCCCeEEEECCCCcHHHHHHhhCCCEEEEEecCCChhHHHHHHH----hCCCCeeeecccCCCCCC---Cccc
Q 046488          317 EVLDIKPGEIRIGLDFSIGTGTFAARMREFNVTLVSAIINLGAPFNEMIAL----RGLVPLYITINQRVPFFD---NTLD  389 (480)
Q Consensus       317 ~vL~l~~g~iR~VLDVGCGtG~fAa~Lae~gV~Vv~vd~d~~~~~~~~iA~----rglip~~~~~ae~LPFpd---~SFD  389 (480)
                      +.+++.++  ..|||+|.|+|.++..|.+++..++.++.|.  .+...+..    .+.+.++.+++..+.+++   +.-.
T Consensus        24 ~~~~~~~~--~~VlEiGpG~G~lT~~L~~~~~~v~~vE~d~--~~~~~L~~~~~~~~~~~vi~~D~l~~~~~~~~~~~~~   99 (262)
T PF00398_consen   24 DALDLSEG--DTVLEIGPGPGALTRELLKRGKRVIAVEIDP--DLAKHLKERFASNPNVEVINGDFLKWDLYDLLKNQPL   99 (262)
T ss_dssp             HHHTCGTT--SEEEEESSTTSCCHHHHHHHSSEEEEEESSH--HHHHHHHHHCTTCSSEEEEES-TTTSCGGGHCSSSEE
T ss_pred             HhcCCCCC--CEEEEeCCCCccchhhHhcccCcceeecCcH--hHHHHHHHHhhhcccceeeecchhccccHHhhcCCce
Confidence            34455433  4899999999999999999887788887662  33333333    233555667766666655   4455


Q ss_pred             hheec
Q 046488          390 LIHTT  394 (480)
Q Consensus       390 lV~ss  394 (480)
                      .|+++
T Consensus       100 ~vv~N  104 (262)
T PF00398_consen  100 LVVGN  104 (262)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            55554

g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....

>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase

Probab=92.41  E-value=0.22  Score=52.11  Aligned_cols=29  Identities=17%  Similarity=0.229  Sum_probs=25.1

Q ss_pred             eEEEECCCCcHHHHHHhhCCCEEEEEecC
Q 046488          328 IGLDFSIGTGTFAARMREFNVTLVSAIIN  356 (480)
Q Consensus       328 ~VLDVGCGtG~fAa~Lae~gV~Vv~vd~d  356 (480)
                      +|||++||+|.++..|++....+++++.+
T Consensus       200 ~vlDl~~G~G~~sl~la~~~~~v~~vE~~  228 (353)
T TIGR02143       200 DLLELYCGNGNFSLALAQNFRRVLATEIA  228 (353)
T ss_pred             cEEEEeccccHHHHHHHHhCCEEEEEECC
Confidence            59999999999999999876678888765

This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.

>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]

Probab=92.38  E-value=0.17  Score=47.93  Aligned_cols=30  Identities=17%  Similarity=0.106  Sum_probs=24.5

Q ss_pred             CeEEEECCCCcHHHHHHhhCCCEEEEEecC
Q 046488          327 RIGLDFSIGTGTFAARMREFNVTLVSAIIN  356 (480)
Q Consensus       327 R~VLDVGCGtG~fAa~Lae~gV~Vv~vd~d  356 (480)
                      ++|+|+.||.|+.+..+|...-.|++++.+
T Consensus         1 ~~vlD~fcG~GGNtIqFA~~~~~Viaidid   30 (163)
T PF09445_consen    1 TTVLDAFCGVGGNTIQFARTFDRVIAIDID   30 (163)
T ss_dssp             SEEEETT-TTSHHHHHHHHTT-EEEEEES-
T ss_pred             CEEEEeccCcCHHHHHHHHhCCeEEEEECC
Confidence            379999999999999999988788888876

Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.

>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=92.26  E-value=0.19  Score=53.25  Aligned_cols=101  Identities=19%  Similarity=0.088  Sum_probs=56.5

Q ss_pred             CeEEEECCCCcHHHHHHhhCCCEEEEEecCCChhHHHHHH---HhCCCCeeeec------ccCCCCC-CCccchheeccc
Q 046488          327 RIGLDFSIGTGTFAARMREFNVTLVSAIINLGAPFNEMIA---LRGLVPLYITI------NQRVPFF-DNTLDLIHTTRF  396 (480)
Q Consensus       327 R~VLDVGCGtG~fAa~Lae~gV~Vv~vd~d~~~~~~~~iA---~rglip~~~~~------ae~LPFp-d~SFDlV~ss~v  396 (480)
                      ..+||+|.|.|.-+.++-+--.+.-++.+-...++...+.   .+...+....+      ..++|++ ...|++|+...-
T Consensus       115 qsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~td~r~s~vt~dRl~lp~ad~ytl~i~~~e  194 (484)
T COG5459         115 QSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTEKTDWRASDVTEDRLSLPAADLYTLAIVLDE  194 (484)
T ss_pred             chhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcccccCCCCCCccchhccCCCccceeehhhhhhh
Confidence            4699999999986555443211111111111113333221   11111111111      4467765 467888887776


Q ss_pred             ccCccChhcHHHHHHHHHhcccCCcEEEEee
Q 046488          397 LDGWIDFVLLDFILYDWDRVLRPGGLLWIDS  427 (480)
Q Consensus       397 L~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~  427 (480)
                      |.+......+...+..+..++.|||.++|..
T Consensus       195 Ll~d~~ek~i~~~ie~lw~l~~~gg~lVivE  225 (484)
T COG5459         195 LLPDGNEKPIQVNIERLWNLLAPGGHLVIVE  225 (484)
T ss_pred             hccccCcchHHHHHHHHHHhccCCCeEEEEe
Confidence            6665544334558888999999999999863

>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=92.08  E-value=3.4  Score=41.03  Aligned_cols=125  Identities=14%  Similarity=0.167  Sum_probs=71.3

Q ss_pred             cCCCCCCCCeEEEECCCCcHHHHHHhhC---C-CEEEEEecCCChhHHHHHHHhCC-CCeeeecc---cCCCCCCCccch
Q 046488          319 LDIKPGEIRIGLDFSIGTGTFAARMREF---N-VTLVSAIINLGAPFNEMIALRGL-VPLYITIN---QRVPFFDNTLDL  390 (480)
Q Consensus       319 L~l~~g~iR~VLDVGCGtG~fAa~Lae~---g-V~Vv~vd~d~~~~~~~~iA~rgl-ip~~~~~a---e~LPFpd~SFDl  390 (480)
                      +++++|+  .||=+|+-+|+...+.++-   | +..+-+++....+.+....+|.. +|.. .++   +..-+-=+..|+
T Consensus        72 ~pi~~g~--~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R~Ni~PIL-~DA~~P~~Y~~~Ve~VDv  148 (231)
T COG1889          72 FPIKEGS--KVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKRPNIIPIL-EDARKPEKYRHLVEKVDV  148 (231)
T ss_pred             CCcCCCC--EEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhCCCceeee-cccCCcHHhhhhcccccE
Confidence            4566665  8999999999999998874   3 22233333322222223333433 4443 332   112222345777


Q ss_pred             heecccccCccChhcHHHHHHHHHhcccCCcEEEEee------ccCChhh-HHHHHHHHHHcCceeeE
Q 046488          391 IHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDS------FFCAKED-MNDYLEVFKMLKYKKHK  451 (480)
Q Consensus       391 V~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~------f~~~~ed-L~~~~~~l~~lGfkkl~  451 (480)
                      |+..     +..+.+.+-+...+..-||+||++++.-      -....++ .++..+.++.-+|+.+.
T Consensus       149 iy~D-----VAQp~Qa~I~~~Na~~FLk~~G~~~i~iKArSIdvT~dp~~vf~~ev~kL~~~~f~i~e  211 (231)
T COG1889         149 IYQD-----VAQPNQAEILADNAEFFLKKGGYVVIAIKARSIDVTADPEEVFKDEVEKLEEGGFEILE  211 (231)
T ss_pred             EEEe-----cCCchHHHHHHHHHHHhcccCCeEEEEEEeecccccCCHHHHHHHHHHHHHhcCceeeE
Confidence            7752     3345555778889999999999877751      2222222 24445566666776554

>PF13679 Methyltransf_32: Methyltransferase domain

Probab=92.06  E-value=0.38  Score=43.51  Aligned_cols=33  Identities=15%  Similarity=0.173  Sum_probs=27.9

Q ss_pred             CCCeEEEECCCCcHHHHHHhh------CCCEEEEEecCC
Q 046488          325 EIRIGLDFSIGTGTFAARMRE------FNVTLVSAIINL  357 (480)
Q Consensus       325 ~iR~VLDVGCGtG~fAa~Lae------~gV~Vv~vd~d~  357 (480)
                      ....|+|+|||-|.++..|+.      .+..+++++.+.
T Consensus        25 ~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~   63 (141)
T PF13679_consen   25 RCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNE   63 (141)
T ss_pred             CCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCc
Confidence            456899999999999999988      378889988764

>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins

Probab=91.82  E-value=2.7  Score=41.08  Aligned_cols=117  Identities=15%  Similarity=0.046  Sum_probs=67.8

Q ss_pred             EEEECCCCcHHHHHHhhCCC--EEEEEecCCC--hhHHHHHHHhCCC---Ceeeec-ccCCCCCCC-ccchheecccccC
Q 046488          329 GLDFSIGTGTFAARMREFNV--TLVSAIINLG--APFNEMIALRGLV---PLYITI-NQRVPFFDN-TLDLIHTTRFLDG  399 (480)
Q Consensus       329 VLDVGCGtG~fAa~Lae~gV--~Vv~vd~d~~--~~~~~~iA~rgli---p~~~~~-ae~LPFpd~-SFDlV~ss~vL~h  399 (480)
                      |.||||--|.++.+|.+.|.  .++++|++.+  ..+...++..++.   ...+++ .+.+  ..+ ..|.|+.+.+=- 
T Consensus         1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l--~~~e~~d~ivIAGMGG-   77 (205)
T PF04816_consen    1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVL--KPGEDVDTIVIAGMGG-   77 (205)
T ss_dssp             EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG----GGG---EEEEEEE-H-
T ss_pred             CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCccccc--CCCCCCCEEEEecCCH-
Confidence            68999999999999999986  4566665432  1233445555543   344555 3434  343 368888655421 


Q ss_pred             ccChhcHHHHHHHHHhcccCCcEEEEeeccCChhhHHHHHHHHHHcCceeeEEEEee
Q 046488          400 WIDFVLLDFILYDWDRVLRPGGLLWIDSFFCAKEDMNDYLEVFKMLKYKKHKWVVVP  456 (480)
Q Consensus       400 ~~d~~~l~~~L~EI~RVLKPGG~fiI~~f~~~~edL~~~~~~l~~lGfkkl~W~~~~  456 (480)
                          ..+..+|.+....++..-.|++.    +..+...+...+...||.-+.=....
T Consensus        78 ----~lI~~ILe~~~~~~~~~~~lILq----P~~~~~~LR~~L~~~gf~I~~E~lv~  126 (205)
T PF04816_consen   78 ----ELIIEILEAGPEKLSSAKRLILQ----PNTHAYELRRWLYENGFEIIDEDLVE  126 (205)
T ss_dssp             ----HHHHHHHHHTGGGGTT--EEEEE----ESS-HHHHHHHHHHTTEEEEEEEEEE
T ss_pred             ----HHHHHHHHhhHHHhccCCeEEEe----CCCChHHHHHHHHHCCCEEEEeEEEe
Confidence                12345778888888877788774    33444567778889999877655543

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.

>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins

Probab=91.42  E-value=0.53  Score=47.94  Aligned_cols=104  Identities=19%  Similarity=0.031  Sum_probs=49.7

Q ss_pred             CCCeEEEECCCCcH--HHHHHhhC---CCEEEEEecCCChhHHH---HHHHhCC----CCeeeeccc------CCCCCCC
Q 046488          325 EIRIGLDFSIGTGT--FAARMREF---NVTLVSAIINLGAPFNE---MIALRGL----VPLYITINQ------RVPFFDN  386 (480)
Q Consensus       325 ~iR~VLDVGCGtG~--fAa~Lae~---gV~Vv~vd~d~~~~~~~---~iA~rgl----ip~~~~~ae------~LPFpd~  386 (480)
                      .++..||+|||--+  ..-..++.   ...|+-++.|   +...   +.-..+.    ..++.++..      .-|--.+
T Consensus        68 GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~D---Pvv~ah~ralL~~~~~g~t~~v~aD~r~p~~iL~~p~~~~  144 (267)
T PF04672_consen   68 GIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDND---PVVLAHARALLADNPRGRTAYVQADLRDPEAILAHPEVRG  144 (267)
T ss_dssp             ---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESS---HHHHHCCHHHHTT-TTSEEEEEE--TT-HHHHHCSHHHHC
T ss_pred             CcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCC---chHHHHHHhhhcCCCCccEEEEeCCCCCHHHHhcCHHHHh
Confidence            58999999999543  34444432   5677777755   2211   1111221    122333211      1111122


Q ss_pred             ccc-----hheecccccCccChhcHHHHHHHHHhcccCCcEEEEeeccCC
Q 046488          387 TLD-----LIHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDSFFCA  431 (480)
Q Consensus       387 SFD-----lV~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~f~~~  431 (480)
                      .+|     .|....+|+++.+.+....++..+...|-||.+++|++....
T Consensus       145 ~lD~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t~d  194 (267)
T PF04672_consen  145 LLDFDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHATDD  194 (267)
T ss_dssp             C--TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB-T
T ss_pred             cCCCCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEecCCC
Confidence            333     344567788887755567899999999999999999976543

; PDB: 3GIW_A 3GO4_A 2QE6_A.

>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species

Probab=90.99  E-value=0.18  Score=48.03  Aligned_cols=44  Identities=20%  Similarity=0.309  Sum_probs=34.8

Q ss_pred             CCCCccchheecccccCcc--------ChhcHHHHHHHHHhcccCCcEEEEe
Q 046488          383 FFDNTLDLIHTTRFLDGWI--------DFVLLDFILYDWDRVLRPGGLLWID  426 (480)
Q Consensus       383 Fpd~SFDlV~ss~vL~h~~--------d~~~l~~~L~EI~RVLKPGG~fiI~  426 (480)
                      -..++||.+.|.+++.|..        ++..-...+.++.|+|||||.+++.
T Consensus        59 ~y~~~fD~~as~~siEh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~  110 (177)
T PF03269_consen   59 KYAGSFDFAASFSSIEHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLG  110 (177)
T ss_pred             HhhccchhhheechhccccccccCCCCCccccHHHHHHHHHhhccCCeEEEE
Confidence            4578899999999888763        2222246899999999999999987

>TIGR01444 fkbM_fam methyltransferase, FkbM family

Probab=90.97  E-value=0.34  Score=42.78  Aligned_cols=30  Identities=7%  Similarity=0.011  Sum_probs=24.9

Q ss_pred             eEEEECCCCcHHHHHHhhCCC--EEEEEecCC
Q 046488          328 IGLDFSIGTGTFAARMREFNV--TLVSAIINL  357 (480)
Q Consensus       328 ~VLDVGCGtG~fAa~Lae~gV--~Vv~vd~d~  357 (480)
                      ++||+|||+|.++..++..+.  .+++++++.
T Consensus         1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~   32 (143)
T TIGR01444         1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLP   32 (143)
T ss_pred             CEEEccCCccHHHHHHHHhCCCCEEEEEecCH
Confidence            489999999999999988744  588888763

Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.

>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members

Probab=90.64  E-value=2.1  Score=42.41  Aligned_cols=94  Identities=18%  Similarity=0.255  Sum_probs=53.7

Q ss_pred             CCCCCCCCeEEEECCC-CcHHHHHHhh-CCCEEEEEecCCChhHHHHHHHhCCCCeeeecccC------CCCCCCccchh
Q 046488          320 DIKPGEIRIGLDFSIG-TGTFAARMRE-FNVTLVSAIINLGAPFNEMIALRGLVPLYITINQR------VPFFDNTLDLI  391 (480)
Q Consensus       320 ~l~~g~iR~VLDVGCG-tG~fAa~Lae-~gV~Vv~vd~d~~~~~~~~iA~rglip~~~~~ae~------LPFpd~SFDlV  391 (480)
                      .+.+++  +||..|+| .|..+..+++ .|+.++.++.+  ......+...+ +.......+.      .....+.+|+|
T Consensus       162 ~~~~~~--~vli~g~g~vG~~~~~la~~~G~~V~~~~~s--~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~D~v  236 (338)
T cd08254         162 EVKPGE--TVLVIGLGGLGLNAVQIAKAMGAAVIAVDIK--EEKLELAKELG-ADEVLNSLDDSPKDKKAAGLGGGFDVI  236 (338)
T ss_pred             CCCCCC--EEEEECCcHHHHHHHHHHHHcCCEEEEEcCC--HHHHHHHHHhC-CCEEEcCCCcCHHHHHHHhcCCCceEE
Confidence            345553  67778876 4777777776 48887766543  22223332223 3322221110      02245678877


Q ss_pred             eecccccCccChhcHHHHHHHHHhcccCCcEEEEee
Q 046488          392 HTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDS  427 (480)
Q Consensus       392 ~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~  427 (480)
                      +....     .    ...+.++.|.|++||.++...
T Consensus       237 id~~g-----~----~~~~~~~~~~l~~~G~~v~~g  263 (338)
T cd08254         237 FDFVG-----T----QPTFEDAQKAVKPGGRIVVVG  263 (338)
T ss_pred             EECCC-----C----HHHHHHHHHHhhcCCEEEEEC
Confidence            74221     1    237889999999999988754

This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=90.60  E-value=0.65  Score=52.98  Aligned_cols=100  Identities=12%  Similarity=-0.025  Sum_probs=55.2

Q ss_pred             CeEEEECCCCcHHHHHHhhC--------------------------------------------CCEEEEEecCCCh--h
Q 046488          327 RIGLDFSIGTGTFAARMREF--------------------------------------------NVTLVSAIINLGA--P  360 (480)
Q Consensus       327 R~VLDVGCGtG~fAa~Lae~--------------------------------------------gV~Vv~vd~d~~~--~  360 (480)
                      ..++|-.||+|++....+..                                            ...+++++.+..+  .
T Consensus       192 ~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~Did~~av~~  271 (702)
T PRK11783        192 TPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGSDIDPRVIQA  271 (702)
T ss_pred             CeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEEECCHHHHHH
Confidence            58999999999997655431                                            1246777766321  1


Q ss_pred             HHHHHHHhCC---CCeeeecccCCCCC--CCccchheeccccc-CccChhcHHHHHHHHHhcc---cCCcEEEEe
Q 046488          361 FNEMIALRGL---VPLYITINQRVPFF--DNTLDLIHTTRFLD-GWIDFVLLDFILYDWDRVL---RPGGLLWID  426 (480)
Q Consensus       361 ~~~~iA~rgl---ip~~~~~ae~LPFp--d~SFDlV~ss~vL~-h~~d~~~l~~~L~EI~RVL---KPGG~fiI~  426 (480)
                      +...+...|.   +.+..+++..++.+  .++||+|+++==.. .+.+...+..+..++.+.|   .||+.+++.
T Consensus       272 A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg~~lk~~~~g~~~~ll  346 (702)
T PRK11783        272 ARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYSQLGRRLKQQFGGWNAALF  346 (702)
T ss_pred             HHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHHHHHHHHHHHHhCCCCeEEEE
Confidence            1222333343   33445566666554  46899999862111 1222222234444444444   499988774

>PLN02668 indole-3-acetate carboxyl methyltransferase

Probab=90.59  E-value=0.95  Score=48.39  Aligned_cols=20  Identities=25%  Similarity=0.571  Sum_probs=16.5

Q ss_pred             CCCCCCccchheecccccCcc
Q 046488          381 VPFFDNTLDLIHTTRFLDGWI  401 (480)
Q Consensus       381 LPFpd~SFDlV~ss~vL~h~~  401 (480)
                      =-||++|.+++|++.++| |.
T Consensus       156 RLfP~~Slh~~~Ss~slH-WL  175 (386)
T PLN02668        156 RLFPARSIDVFHSAFSLH-WL  175 (386)
T ss_pred             cccCCCceEEEEeeccce-ec
Confidence            348899999999999984 53

>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species

Probab=90.46  E-value=0.47  Score=48.66  Aligned_cols=98  Identities=21%  Similarity=0.073  Sum_probs=56.8

Q ss_pred             CeEEEECCCCcHHHHHHhhCCC-EEEEEecCCChhHHH----HHHHhCCC----Ceeeec-ccCCC--CCCCccchheec
Q 046488          327 RIGLDFSIGTGTFAARMREFNV-TLVSAIINLGAPFNE----MIALRGLV----PLYITI-NQRVP--FFDNTLDLIHTT  394 (480)
Q Consensus       327 R~VLDVGCGtG~fAa~Lae~gV-~Vv~vd~d~~~~~~~----~iA~rgli----p~~~~~-ae~LP--Fpd~SFDlV~ss  394 (480)
                      ++|||+=|=||+|+.+.+..|+ .|+++|.+  ..+.+    .++..+.-    .++..+ .+-+.  -..+.||+|++.
T Consensus       125 krvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S--~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD~IIlD  202 (286)
T PF10672_consen  125 KRVLNLFSYTGGFSVAAAAGGAKEVVSVDSS--KRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKGGRFDLIILD  202 (286)
T ss_dssp             CEEEEET-TTTHHHHHHHHTTESEEEEEES---HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHTT-EEEEEE-
T ss_pred             CceEEecCCCCHHHHHHHHCCCCEEEEEeCC--HHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhcCCCCCEEEEC
Confidence            4899999999999999888776 57888764  23332    34444431    122222 11111  024689999972


Q ss_pred             ---ccccCccChhcHHHHHHHHHhcccCCcEEEEe
Q 046488          395 ---RFLDGWIDFVLLDFILYDWDRVLRPGGLLWID  426 (480)
Q Consensus       395 ---~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~  426 (480)
                         +.=..+.-......++..+.++|+|||.+++.
T Consensus       203 PPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~  237 (286)
T PF10672_consen  203 PPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTC  237 (286)
T ss_dssp             -SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence               22111111112356788899999999998765

The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.

>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=90.43  E-value=1  Score=48.72  Aligned_cols=112  Identities=17%  Similarity=0.202  Sum_probs=69.1

Q ss_pred             CeEEEECCCCcHHHHHHhhCCCEEEEEecCCChh--HHHHHHHhCCCCe--eeecccCCCCC---CCccchheecccccC
Q 046488          327 RIGLDFSIGTGTFAARMREFNVTLVSAIINLGAP--FNEMIALRGLVPL--YITINQRVPFF---DNTLDLIHTTRFLDG  399 (480)
Q Consensus       327 R~VLDVGCGtG~fAa~Lae~gV~Vv~vd~d~~~~--~~~~iA~rglip~--~~~~ae~LPFp---d~SFDlV~ss~vL~h  399 (480)
                      .+|||+=||.|+|+..|+++...|+++.++..+.  +...++..+.-+.  ..+.++++.-.   ...||.|+..    +
T Consensus       295 ~~vlDlYCGvG~f~l~lA~~~~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~~~~~~~~d~VvvD----P  370 (432)
T COG2265         295 ERVLDLYCGVGTFGLPLAKRVKKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPAWWEGYKPDVVVVD----P  370 (432)
T ss_pred             CEEEEeccCCChhhhhhcccCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhhhccccCCCCEEEEC----C
Confidence            4899999999999999998888888888763222  2223333333332  33445554433   3578988842    1


Q ss_pred             ccChhcHH-HHHHHHHhcccCCcEEEEeeccCChhhHHHHHHHHHHcCce
Q 046488          400 WIDFVLLD-FILYDWDRVLRPGGLLWIDSFFCAKEDMNDYLEVFKMLKYK  448 (480)
Q Consensus       400 ~~d~~~l~-~~L~EI~RVLKPGG~fiI~~f~~~~edL~~~~~~l~~lGfk  448 (480)
                        ++.-+. .++.++.+ ++|-..++|+   |....+.+-...+...||+
T Consensus       371 --PR~G~~~~~lk~l~~-~~p~~IvYVS---CNP~TlaRDl~~L~~~gy~  414 (432)
T COG2265         371 --PRAGADREVLKQLAK-LKPKRIVYVS---CNPATLARDLAILASTGYE  414 (432)
T ss_pred             --CCCCCCHHHHHHHHh-cCCCcEEEEe---CCHHHHHHHHHHHHhCCeE
Confidence              111112 35555554 5677777774   6777776555666776775

>COG3897 Predicted methyltransferase [General function prediction only]

Probab=90.41  E-value=0.35  Score=47.48  Aligned_cols=92  Identities=21%  Similarity=0.241  Sum_probs=53.8

Q ss_pred             CCeEEEECCCCcHHHHHHhhCCCE-EEEEecCCChhHHHHH----HHhCCCCeeeecccCCCCCCCccchheecccccCc
Q 046488          326 IRIGLDFSIGTGTFAARMREFNVT-LVSAIINLGAPFNEMI----ALRGLVPLYITINQRVPFFDNTLDLIHTTRFLDGW  400 (480)
Q Consensus       326 iR~VLDVGCGtG~fAa~Lae~gV~-Vv~vd~d~~~~~~~~i----A~rglip~~~~~ae~LPFpd~SFDlV~ss~vL~h~  400 (480)
                      .++|||+|.|+|..+...+..|.. ++..+.+   +...+.    ++..++....... .+-..+..||+|+.+.++...
T Consensus        80 gkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~---P~~~~ai~lNa~angv~i~~~~~-d~~g~~~~~Dl~LagDlfy~~  155 (218)
T COG3897          80 GKRVLDLGAGSGLVAIAAARAGAAEVVAADID---PWLEQAIRLNAAANGVSILFTHA-DLIGSPPAFDLLLAGDLFYNH  155 (218)
T ss_pred             cceeeecccccChHHHHHHHhhhHHHHhcCCC---hHHHHHhhcchhhccceeEEeec-cccCCCcceeEEEeeceecCc
Confidence            368999999999988877776542 3444433   333221    1122222222112 233388999999999887654


Q ss_pred             cChhcHHHHHHHHHhcccCCcEEEE
Q 046488          401 IDFVLLDFILYDWDRVLRPGGLLWI  425 (480)
Q Consensus       401 ~d~~~l~~~L~EI~RVLKPGG~fiI  425 (480)
                      ...   ..++. ..+.|+-.|..++
T Consensus       156 ~~a---~~l~~-~~~~l~~~g~~vl  176 (218)
T COG3897         156 TEA---DRLIP-WKDRLAEAGAAVL  176 (218)
T ss_pred             hHH---HHHHH-HHHHHHhCCCEEE
Confidence            433   34666 6666666555444

>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]

Probab=90.40  E-value=0.4  Score=47.88  Aligned_cols=100  Identities=15%  Similarity=0.070  Sum_probs=57.9

Q ss_pred             CeEEEECCCCcHHHHHHhhCCCEE-EEEecCCChhHHHHHHHhC------CCCeeeecccCCC-CCCCccchheeccccc
Q 046488          327 RIGLDFSIGTGTFAARMREFNVTL-VSAIINLGAPFNEMIALRG------LVPLYITINQRVP-FFDNTLDLIHTTRFLD  398 (480)
Q Consensus       327 R~VLDVGCGtG~fAa~Lae~gV~V-v~vd~d~~~~~~~~iA~rg------lip~~~~~ae~LP-Fpd~SFDlV~ss~vL~  398 (480)
                      ++||.||-|-|.....+.++...- ..+...  ..-..+...-|      .++..-.|-..+| .+|++||-|.-...-.
T Consensus       103 grvLnVGFGMgIidT~iQe~~p~~H~IiE~h--p~V~krmr~~gw~ek~nViil~g~WeDvl~~L~d~~FDGI~yDTy~e  180 (271)
T KOG1709|consen  103 GRVLNVGFGMGIIDTFIQEAPPDEHWIIEAH--PDVLKRMRDWGWREKENVIILEGRWEDVLNTLPDKHFDGIYYDTYSE  180 (271)
T ss_pred             ceEEEeccchHHHHHHHhhcCCcceEEEecC--HHHHHHHHhcccccccceEEEecchHhhhccccccCcceeEeechhh
Confidence            489999999999998888874321 112211  12222222222      1222222322222 4599999998643223


Q ss_pred             CccChhcHHHHHHHHHhcccCCcEEEEeeccCC
Q 046488          399 GWIDFVLLDFILYDWDRVLRPGGLLWIDSFFCA  431 (480)
Q Consensus       399 h~~d~~~l~~~L~EI~RVLKPGG~fiI~~f~~~  431 (480)
                      +..   ++..+.+-+.|.|||||.|-+.+..+-
T Consensus       181 ~yE---dl~~~hqh~~rLLkP~gv~SyfNg~~~  210 (271)
T KOG1709|consen  181 LYE---DLRHFHQHVVRLLKPEGVFSYFNGLGA  210 (271)
T ss_pred             HHH---HHHHHHHHHhhhcCCCceEEEecCccc
Confidence            322   235688899999999999877544433

>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH

Probab=90.35  E-value=0.24  Score=47.31  Aligned_cols=96  Identities=16%  Similarity=0.119  Sum_probs=52.8

Q ss_pred             CeEEEECCCCcHHHHHHhhCCC-EEEEEecCCChhHHH----HHHHhCCC---Ceeeec----ccCCCCCCCccchheec
Q 046488          327 RIGLDFSIGTGTFAARMREFNV-TLVSAIINLGAPFNE----MIALRGLV---PLYITI----NQRVPFFDNTLDLIHTT  394 (480)
Q Consensus       327 R~VLDVGCGtG~fAa~Lae~gV-~Vv~vd~d~~~~~~~----~iA~rgli---p~~~~~----ae~LPFpd~SFDlV~ss  394 (480)
                      .+|||+=||||.++....++|+ .|+-++.+.  .+..    .+..-+..   ..+..+    ..++.-....||+|++.
T Consensus        44 ~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~--~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIflD  121 (183)
T PF03602_consen   44 ARVLDLFAGSGALGLEALSRGAKSVVFVEKNR--KAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIFLD  121 (183)
T ss_dssp             -EEEETT-TTSHHHHHHHHTT-SEEEEEES-H--HHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEEE-
T ss_pred             CeEEEcCCccCccHHHHHhcCCCeEEEEECCH--HHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEEEC
Confidence            4899999999999999999986 455555442  2221    22222222   122222    22232357899999964


Q ss_pred             ccccCccChhcHHHHHHHHH--hcccCCcEEEEee
Q 046488          395 RFLDGWIDFVLLDFILYDWD--RVLRPGGLLWIDS  427 (480)
Q Consensus       395 ~vL~h~~d~~~l~~~L~EI~--RVLKPGG~fiI~~  427 (480)
                      =   ++.....+..++..+.  ..|+++|.+++-+
T Consensus       122 P---PY~~~~~~~~~l~~l~~~~~l~~~~~ii~E~  153 (183)
T PF03602_consen  122 P---PYAKGLYYEELLELLAENNLLNEDGLIIIEH  153 (183)
T ss_dssp             ----STTSCHHHHHHHHHHHHTTSEEEEEEEEEEE
T ss_pred             C---CcccchHHHHHHHHHHHCCCCCCCEEEEEEe
Confidence            1   1111110144666665  8999999988854

They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.

>KOG3115 consensus Methyltransferase-like protein [General function prediction only]

Probab=88.75  E-value=1.1  Score=44.55  Aligned_cols=23  Identities=13%  Similarity=0.018  Sum_probs=19.5

Q ss_pred             eEEEECCCCcHHHHHHhhCCCEE
Q 046488          328 IGLDFSIGTGTFAARMREFNVTL  350 (480)
Q Consensus       328 ~VLDVGCGtG~fAa~Lae~gV~V  350 (480)
                      ...|||||.|.+...|+....+.
T Consensus        63 efaDIGCGyGGLlv~Lsp~fPdt   85 (249)
T KOG3115|consen   63 EFADIGCGYGGLLMKLAPKFPDT   85 (249)
T ss_pred             eEEeeccCccchhhhccccCccc
Confidence            48999999999999999885443

>COG4076 Predicted RNA methylase [General function prediction only]

Probab=88.66  E-value=0.71  Score=45.37  Aligned_cols=92  Identities=13%  Similarity=0.092  Sum_probs=58.8

Q ss_pred             eEEEECCCCcHHHHHHhhCCCEEEEEecCCChhHHHHHHHhCC-----C--CeeeecccCCCCCCCccchheecccccCc
Q 046488          328 IGLDFSIGTGTFAARMREFNVTLVSAIINLGAPFNEMIALRGL-----V--PLYITINQRVPFFDNTLDLIHTTRFLDGW  400 (480)
Q Consensus       328 ~VLDVGCGtG~fAa~Lae~gV~Vv~vd~d~~~~~~~~iA~rgl-----i--p~~~~~ae~LPFpd~SFDlV~ss~vL~h~  400 (480)
                      .+-|+|+|+|.++...++..-.|+++..+   |.....|.+++     .  .++.+++....|  ...|+|+|-..=.-+
T Consensus        35 ~~~DLGaGsGiLs~~Aa~~A~rViAiE~d---Pk~a~~a~eN~~v~g~~n~evv~gDA~~y~f--e~ADvvicEmlDTaL  109 (252)
T COG4076          35 TFADLGAGSGILSVVAAHAAERVIAIEKD---PKRARLAEENLHVPGDVNWEVVVGDARDYDF--ENADVVICEMLDTAL  109 (252)
T ss_pred             ceeeccCCcchHHHHHHhhhceEEEEecC---cHHHHHhhhcCCCCCCcceEEEecccccccc--cccceeHHHHhhHHh
Confidence            69999999999887777665567777765   45555565552     2  234455555555  678999984321122


Q ss_pred             cChhcHHHHHHHHHhcccCCcEEEE
Q 046488          401 IDFVLLDFILYDWDRVLRPGGLLWI  425 (480)
Q Consensus       401 ~d~~~l~~~L~EI~RVLKPGG~fiI  425 (480)
                      .+... ..++..+...||-.|.++=
T Consensus       110 i~E~q-VpV~n~vleFLr~d~tiiP  133 (252)
T COG4076         110 IEEKQ-VPVINAVLEFLRYDPTIIP  133 (252)
T ss_pred             hcccc-cHHHHHHHHHhhcCCcccc
Confidence            22222 3477777778888888653

>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=88.20  E-value=0.64  Score=43.99  Aligned_cols=69  Identities=16%  Similarity=0.046  Sum_probs=41.7

Q ss_pred             CCCeEEEECCCCcHHHHHHhhC-CCEEEEEecCCChhHHHHHHHhCC------CCeeeecccCCCCCCCccchheeccc
Q 046488          325 EIRIGLDFSIGTGTFAARMREF-NVTLVSAIINLGAPFNEMIALRGL------VPLYITINQRVPFFDNTLDLIHTTRF  396 (480)
Q Consensus       325 ~iR~VLDVGCGtG~fAa~Lae~-gV~Vv~vd~d~~~~~~~~iA~rgl------ip~~~~~ae~LPFpd~SFDlV~ss~v  396 (480)
                      +...++|+|||.|-+....+-. +-.++|++++.  ++++ ++.++.      +.+.......+-+..+.||.++.+--
T Consensus        48 Egkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdp--eALE-If~rNaeEfEvqidlLqcdildle~~~g~fDtaviNpp  123 (185)
T KOG3420|consen   48 EGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDP--EALE-IFTRNAEEFEVQIDLLQCDILDLELKGGIFDTAVINPP  123 (185)
T ss_pred             cCcchhhhcCchhhhHHHhhcCCCceEEeeecCH--HHHH-HHhhchHHhhhhhheeeeeccchhccCCeEeeEEecCC
Confidence            3458999999999987555443 45678888773  3333 333322      23333444445455688888876543

>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3)

Probab=87.89  E-value=0.17  Score=45.13  Aligned_cols=39  Identities=28%  Similarity=0.437  Sum_probs=28.6

Q ss_pred             ccchheecccccCcc----ChhcHHHHHHHHHhcccCCcEEEEe
Q 046488          387 TLDLIHTTRFLDGWI----DFVLLDFILYDWDRVLRPGGLLWID  426 (480)
Q Consensus       387 SFDlV~ss~vL~h~~----d~~~l~~~L~EI~RVLKPGG~fiI~  426 (480)
                      .||+|.|..+. -|.    .++.+..++..+++.|||||.|++-
T Consensus         1 ~yDvilclSVt-kWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilE   43 (110)
T PF06859_consen    1 QYDVILCLSVT-KWIHLNWGDEGLKRFFRRIYSLLRPGGILILE   43 (110)
T ss_dssp             -EEEEEEES-H-HHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             CccEEEEEEee-EEEEecCcCHHHHHHHHHHHHhhCCCCEEEEe
Confidence            38999986543 222    2334678999999999999999986

Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.

>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1

Probab=87.53  E-value=2.5  Score=43.98  Aligned_cols=102  Identities=19%  Similarity=0.124  Sum_probs=55.8

Q ss_pred             hcCCCCCCCCeEEEECCCC-cHHHHHHhhC-CCE-EEEEecCCChhHHHHHHHhC-CCCeeee-----cccCC-CC-CCC
Q 046488          318 VLDIKPGEIRIGLDFSIGT-GTFAARMREF-NVT-LVSAIINLGAPFNEMIALRG-LVPLYIT-----INQRV-PF-FDN  386 (480)
Q Consensus       318 vL~l~~g~iR~VLDVGCGt-G~fAa~Lae~-gV~-Vv~vd~d~~~~~~~~iA~rg-lip~~~~-----~ae~L-PF-pd~  386 (480)
                      +..+.+++  +||.+|||. |..+..+++. |+. ++.++.+   +.....+++. ....+..     ..+.+ .+ ..+
T Consensus       179 ~~~~~~g~--~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~---~~~~~~~~~~~~~~vi~~~~~~~~~~~l~~~~~~~  253 (386)
T cd08283         179 LAEVKPGD--TVAVWGCGPVGLFAARSAKLLGAERVIAIDRV---PERLEMARSHLGAETINFEEVDDVVEALRELTGGR  253 (386)
T ss_pred             hccCCCCC--EEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC---HHHHHHHHHcCCcEEEcCCcchHHHHHHHHHcCCC
Confidence            33455553  799999987 8788777764 763 6666543   2223333332 2221110     11111 11 233


Q ss_pred             ccchheeccc---------------ccCccChhcHHHHHHHHHhcccCCcEEEEee
Q 046488          387 TLDLIHTTRF---------------LDGWIDFVLLDFILYDWDRVLRPGGLLWIDS  427 (480)
Q Consensus       387 SFDlV~ss~v---------------L~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~  427 (480)
                      .+|+|+-.-.               +....+.   ...+.++.|.|+|||.+++..
T Consensus       254 ~~D~vld~vg~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~G~iv~~g  306 (386)
T cd08283         254 GPDVCIDAVGMEAHGSPLHKAEQALLKLETDR---PDALREAIQAVRKGGTVSIIG  306 (386)
T ss_pred             CCCEEEECCCCcccccccccccccccccccCc---hHHHHHHHHHhccCCEEEEEc
Confidence            6888775321               0111122   347899999999999998764

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T

>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]

Probab=87.15  E-value=4.6  Score=40.85  Aligned_cols=103  Identities=16%  Similarity=0.101  Sum_probs=56.2

Q ss_pred             CCeEEEECCCCcHHHHHHhhC-CCEEEEEecCCChhHHHHH------HHh--C-CCCe-eeecccCCC--CCCCc-cchh
Q 046488          326 IRIGLDFSIGTGTFAARMREF-NVTLVSAIINLGAPFNEMI------ALR--G-LVPL-YITINQRVP--FFDNT-LDLI  391 (480)
Q Consensus       326 iR~VLDVGCGtG~fAa~Lae~-gV~Vv~vd~d~~~~~~~~i------A~r--g-lip~-~~~~ae~LP--Fpd~S-FDlV  391 (480)
                      ..+||++|.|||-.++.++.. +..++-.+.-.....+...      +..  | -+.+ .+.|..++.  +.... ||+|
T Consensus        87 ~~~vlELGsGtglvG~~aa~~~~~~v~ltD~~~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~Dli  166 (248)
T KOG2793|consen   87 YINVLELGSGTGLVGILAALLLGAEVVLTDLPKVVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPFDLI  166 (248)
T ss_pred             ceeEEEecCCccHHHHHHHHHhcceeccCCchhhHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCcccEE
Confidence            457999999999766666653 5555554432211222211      111  1 1111 123322222  22222 9999


Q ss_pred             eecccccCccChhcHHHHHHHHHhcccCCcEEEEeeccCC
Q 046488          392 HTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDSFFCA  431 (480)
Q Consensus       392 ~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~f~~~  431 (480)
                      +++.++.+-...+   -+..=+.-.|--+|.+++....+.
T Consensus       167 lasDvvy~~~~~e---~Lv~tla~ll~~~~~i~l~~~lr~  203 (248)
T KOG2793|consen  167 LASDVVYEEESFE---GLVKTLAFLLAKDGTIFLAYPLRR  203 (248)
T ss_pred             EEeeeeecCCcch---hHHHHHHHHHhcCCeEEEEEeccc
Confidence            9999987655554   356666667777886555444333

>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]

Probab=86.07  E-value=3.3  Score=40.18  Aligned_cols=97  Identities=16%  Similarity=0.217  Sum_probs=54.0

Q ss_pred             CeEEEECCCCcHHHHHHhhCCCE-EEEEecCCChhHHHH----HHHhC---CCCeeeeccc-CCCCCCC--ccchheecc
Q 046488          327 RIGLDFSIGTGTFAARMREFNVT-LVSAIINLGAPFNEM----IALRG---LVPLYITINQ-RVPFFDN--TLDLIHTTR  395 (480)
Q Consensus       327 R~VLDVGCGtG~fAa~Lae~gV~-Vv~vd~d~~~~~~~~----iA~rg---lip~~~~~ae-~LPFpd~--SFDlV~ss~  395 (480)
                      .++||+=+|+|.++....++|.. ++-++.+.  .+...    +..-+   ....+..++. .|+-...  .||+|+..=
T Consensus        45 ~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~--~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~~~~FDlVflDP  122 (187)
T COG0742          45 ARVLDLFAGSGALGLEALSRGAARVVFVEKDR--KAVKILKENLKALGLEGEARVLRNDALRALKQLGTREPFDLVFLDP  122 (187)
T ss_pred             CEEEEecCCccHhHHHHHhCCCceEEEEecCH--HHHHHHHHHHHHhCCccceEEEeecHHHHHHhcCCCCcccEEEeCC
Confidence            48999999999999999999765 44444432  22222    11112   2233333332 2222333  499999642


Q ss_pred             ccc-CccChhcHHHHHHHHHhcccCCcEEEEe
Q 046488          396 FLD-GWIDFVLLDFILYDWDRVLRPGGLLWID  426 (480)
Q Consensus       396 vL~-h~~d~~~l~~~L~EI~RVLKPGG~fiI~  426 (480)
                      =+. ...+.. +.....+-...|+|+|.+++-
T Consensus       123 Py~~~l~~~~-~~~~~~~~~~~L~~~~~iv~E  153 (187)
T COG0742         123 PYAKGLLDKE-LALLLLEENGWLKPGALIVVE  153 (187)
T ss_pred             CCccchhhHH-HHHHHHHhcCCcCCCcEEEEE
Confidence            221 111111 122333466889999998884

>PRK11524 putative methyltransferase; Provisional

Probab=85.59  E-value=2  Score=43.42  Aligned_cols=20  Identities=25%  Similarity=0.335  Sum_probs=17.9

Q ss_pred             HHHHHHHHhcccCCcEEEEe
Q 046488          407 DFILYDWDRVLRPGGLLWID  426 (480)
Q Consensus       407 ~~~L~EI~RVLKPGG~fiI~  426 (480)
                      ...+.|+.|+|||||.+++.
T Consensus        60 ~~~l~~~~rvLK~~G~i~i~   79 (284)
T PRK11524         60 YEWIDECHRVLKKQGTMYIM   79 (284)
T ss_pred             HHHHHHHHHHhCCCcEEEEE
Confidence            46899999999999999884

>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=84.76  E-value=0.13  Score=51.60  Aligned_cols=98  Identities=21%  Similarity=0.257  Sum_probs=57.1

Q ss_pred             CCeEEEECCCCcHHHHHHhhC--------CC---EEEEEecCCChhHHHHHHHhCCCCeeeec-----ccC-CC-CCCCc
Q 046488          326 IRIGLDFSIGTGTFAARMREF--------NV---TLVSAIINLGAPFNEMIALRGLVPLYITI-----NQR-VP-FFDNT  387 (480)
Q Consensus       326 iR~VLDVGCGtG~fAa~Lae~--------gV---~Vv~vd~d~~~~~~~~iA~rglip~~~~~-----ae~-LP-Fpd~S  387 (480)
                      .++|+|+.+-.|+|+..|.++        +.   .++++++...+|.      +|.+.+.-+.     ++. +- |....
T Consensus        42 v~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~MaPI------~GV~qlq~DIT~~stae~Ii~hfggek  115 (294)
T KOG1099|consen   42 VKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMAPI------EGVIQLQGDITSASTAEAIIEHFGGEK  115 (294)
T ss_pred             hhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCCcc------CceEEeecccCCHhHHHHHHHHhCCCC
Confidence            678999999999999998764        11   1566665322221      2221111111     111 11 34457


Q ss_pred             cchheeccc-----ccCcc---ChhcHHHHHHHHHhcccCCcEEEEeecc
Q 046488          388 LDLIHTTRF-----LDGWI---DFVLLDFILYDWDRVLRPGGLLWIDSFF  429 (480)
Q Consensus       388 FDlV~ss~v-----L~h~~---d~~~l~~~L~EI~RVLKPGG~fiI~~f~  429 (480)
                      -|+|+|..+     +|.+.   ..+.+..+|.-.-+||||||.|+---|.
T Consensus       116 AdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaKifR  165 (294)
T KOG1099|consen  116 ADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAKIFR  165 (294)
T ss_pred             ccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeehhhhc
Confidence            888888543     33322   2334456777888999999998754343

>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins

Probab=84.66  E-value=2.7  Score=42.74  Aligned_cols=114  Identities=22%  Similarity=0.288  Sum_probs=64.1

Q ss_pred             hhhHHHhcCCCCCCCCeEEEECCCCcHHHHHHhhC---CCEEEEEecCCCh--hHHHHHHHhCCCCeee--ecccCC-C-
Q 046488          312 DFLIPEVLDIKPGEIRIGLDFSIGTGTFAARMREF---NVTLVSAIINLGA--PFNEMIALRGLVPLYI--TINQRV-P-  382 (480)
Q Consensus       312 d~~I~~vL~l~~g~iR~VLDVGCGtG~fAa~Lae~---gV~Vv~vd~d~~~--~~~~~iA~rglip~~~--~~ae~L-P-  382 (480)
                      ..+...+|...++.  .|||+.+|.|+=+.++++.   .-.+++.+.+...  .....+.+-|......  .++..+ + 
T Consensus        74 S~l~~~~L~~~~~~--~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~~  151 (283)
T PF01189_consen   74 SQLVALALDPQPGE--RVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKLDPK  151 (283)
T ss_dssp             HHHHHHHHTTTTTS--EEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHHHH
T ss_pred             cccccccccccccc--cccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeecccccccc
Confidence            33444566666665  7999999999988888775   2466777655211  1111222223333222  232222 2 


Q ss_pred             CCCCccchhee----cc--cccCccC------h-------hcHHHHHHHHHhcc----cCCcEEEEee
Q 046488          383 FFDNTLDLIHT----TR--FLDGWID------F-------VLLDFILYDWDRVL----RPGGLLWIDS  427 (480)
Q Consensus       383 Fpd~SFDlV~s----s~--vL~h~~d------~-------~~l~~~L~EI~RVL----KPGG~fiI~~  427 (480)
                      .....||.|..    +.  ++..-++      +       ..-..+|....+.|    ||||+++.+.
T Consensus       152 ~~~~~fd~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsT  219 (283)
T PF01189_consen  152 KPESKFDRVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYST  219 (283)
T ss_dssp             HHTTTEEEEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEE
T ss_pred             ccccccchhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEe
Confidence            23346999985    22  2222111      0       01135889999999    9999998874

In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....

>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known

Probab=84.34  E-value=12  Score=35.26  Aligned_cols=117  Identities=12%  Similarity=-0.019  Sum_probs=69.1

Q ss_pred             ECCCCcHHHHHHhhC---CCEEEEEecCCChhHHH-------H--HHHhCCCCeeeec-cc----CCCCCCCccchheec
Q 046488          332 FSIGTGTFAARMREF---NVTLVSAIINLGAPFNE-------M--IALRGLVPLYITI-NQ----RVPFFDNTLDLIHTT  394 (480)
Q Consensus       332 VGCGtG~fAa~Lae~---gV~Vv~vd~d~~~~~~~-------~--iA~rglip~~~~~-ae----~LPFpd~SFDlV~ss  394 (480)
                      ||=|.=+|+..|++.   +..+++++.+.......       .  .-++.++.+.+++ +.    .+....+.||.|+-+
T Consensus         3 vGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g~~V~~~VDat~l~~~~~~~~~~FDrIiFN   82 (166)
T PF10354_consen    3 VGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRELGVTVLHGVDATKLHKHFRLKNQRFDRIIFN   82 (166)
T ss_pred             eeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhcCCccccCCCCCcccccccccCCcCCEEEEe
Confidence            556666788888875   45666666654322111       1  1123345555544 33    344567999999965


Q ss_pred             ccccCcc------------ChhcHHHHHHHHHhcccCCcEEEEeeccCChhhHHHHHHHHHHcCceee
Q 046488          395 RFLDGWI------------DFVLLDFILYDWDRVLRPGGLLWIDSFFCAKEDMNDYLEVFKMLKYKKH  450 (480)
Q Consensus       395 ~vL~h~~------------d~~~l~~~L~EI~RVLKPGG~fiI~~f~~~~edL~~~~~~l~~lGfkkl  450 (480)
                      +=  |..            ....+..+|....++|+++|.+.|+......-+.=.+.++++..|+.-.
T Consensus        83 FP--H~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~~py~~W~i~~lA~~~gl~l~  148 (166)
T PF10354_consen   83 FP--HVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDGQPYDSWNIEELAAEAGLVLV  148 (166)
T ss_pred             CC--CCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCCCccccHHHHHHhcCCEEE
Confidence            42  332            1234567899999999999999997544333211123467777777543

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=84.21  E-value=2.5  Score=44.52  Aligned_cols=94  Identities=18%  Similarity=0.108  Sum_probs=57.3

Q ss_pred             CCCCCCCeEEEECCC-CcHHHHHHhh-CCCEEEEEecCCChhHHHHHHHhCCCCeeeecc--cCCCCCCCccchheeccc
Q 046488          321 IKPGEIRIGLDFSIG-TGTFAARMRE-FNVTLVSAIINLGAPFNEMIALRGLVPLYITIN--QRVPFFDNTLDLIHTTRF  396 (480)
Q Consensus       321 l~~g~iR~VLDVGCG-tG~fAa~Lae-~gV~Vv~vd~d~~~~~~~~iA~rglip~~~~~a--e~LPFpd~SFDlV~ss~v  396 (480)
                      +++|+  .|+=+|+| .|..|..+++ .|.+|+.++.+.   ...+.|++-+...+....  ....--.+.||+|+..-.
T Consensus       164 ~~pG~--~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~---~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~tv~  238 (339)
T COG1064         164 VKPGK--WVAVVGAGGLGHMAVQYAKAMGAEVIAITRSE---EKLELAKKLGADHVINSSDSDALEAVKEIADAIIDTVG  238 (339)
T ss_pred             CCCCC--EEEEECCcHHHHHHHHHHHHcCCeEEEEeCCh---HHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEECCC
Confidence            45554  67777776 4567888887 588998888653   223344443333333321  111111223888885332


Q ss_pred             ccCccChhcHHHHHHHHHhcccCCcEEEEeecc
Q 046488          397 LDGWIDFVLLDFILYDWDRVLRPGGLLWIDSFF  429 (480)
Q Consensus       397 L~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~f~  429 (480)
                            .    ..+....+.||+||.+++....
T Consensus       239 ------~----~~~~~~l~~l~~~G~~v~vG~~  261 (339)
T COG1064         239 ------P----ATLEPSLKALRRGGTLVLVGLP  261 (339)
T ss_pred             ------h----hhHHHHHHHHhcCCEEEEECCC
Confidence                  1    2688999999999999987544

>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) []

Probab=83.66  E-value=0.71  Score=41.31  Aligned_cols=30  Identities=10%  Similarity=-0.027  Sum_probs=26.1

Q ss_pred             CCeEEEECCCCcHHHHHHhhCCCEEEEEec
Q 046488          326 IRIGLDFSIGTGTFAARMREFNVTLVSAII  355 (480)
Q Consensus       326 iR~VLDVGCGtG~fAa~Lae~gV~Vv~vd~  355 (480)
                      .....|+|||.|.+.--|.+.|....++|.
T Consensus        59 ~~~FVDlGCGNGLLV~IL~~EGy~G~GiD~   88 (112)
T PF07757_consen   59 FQGFVDLGCGNGLLVYILNSEGYPGWGIDA   88 (112)
T ss_pred             CCceEEccCCchHHHHHHHhCCCCcccccc
Confidence            346899999999999999999998888874

; GO: 0008168 methyltransferase activity

>PRK10742 putative methyltransferase; Provisional

Probab=83.58  E-value=2.1  Score=43.35  Aligned_cols=43  Identities=16%  Similarity=0.095  Sum_probs=36.0

Q ss_pred             hHHHhcCCCCCCCCeEEEECCCCcHHHHHHhhCCCEEEEEecC
Q 046488          314 LIPEVLDIKPGEIRIGLDFSIGTGTFAARMREFNVTLVSAIIN  356 (480)
Q Consensus       314 ~I~~vL~l~~g~iR~VLDVGCGtG~fAa~Lae~gV~Vv~vd~d  356 (480)
                      .+.+.+.+++|..-+|||.=+|+|..+..++.+|..|+.++-+
T Consensus        77 ~l~kAvglk~g~~p~VLD~TAGlG~Da~~las~G~~V~~vEr~  119 (250)
T PRK10742         77 AVAKAVGIKGDYLPDVVDATAGLGRDAFVLASVGCRVRMLERN  119 (250)
T ss_pred             HHHHHhCCCCCCCCEEEECCCCccHHHHHHHHcCCEEEEEECC
Confidence            5667778887755589999999999999999999998777644

>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1

Probab=83.35  E-value=3.1  Score=35.88  Aligned_cols=84  Identities=14%  Similarity=0.122  Sum_probs=53.3

Q ss_pred             CCcHHHHHHhhC-CCEEEEEecCCChhHHHHHHHhCCCCeeeecccC-----C--CCCCCccchheecccccCccChhcH
Q 046488          335 GTGTFAARMREF-NVTLVSAIINLGAPFNEMIALRGLVPLYITINQR-----V--PFFDNTLDLIHTTRFLDGWIDFVLL  406 (480)
Q Consensus       335 GtG~fAa~Lae~-gV~Vv~vd~d~~~~~~~~iA~rglip~~~~~ae~-----L--PFpd~SFDlV~ss~vL~h~~d~~~l  406 (480)
                      |.|.++..+++. |..++.++.+   +...+.+++-+...+....+.     +  .+..+.+|+|+-.-.     .    
T Consensus         1 ~vG~~a~q~ak~~G~~vi~~~~~---~~k~~~~~~~Ga~~~~~~~~~~~~~~i~~~~~~~~~d~vid~~g-----~----   68 (130)
T PF00107_consen    1 GVGLMAIQLAKAMGAKVIATDRS---EEKLELAKELGADHVIDYSDDDFVEQIRELTGGRGVDVVIDCVG-----S----   68 (130)
T ss_dssp             HHHHHHHHHHHHTTSEEEEEESS---HHHHHHHHHTTESEEEETTTSSHHHHHHHHTTTSSEEEEEESSS-----S----
T ss_pred             ChHHHHHHHHHHcCCEEEEEECC---HHHHHHHHhhcccccccccccccccccccccccccceEEEEecC-----c----
Confidence            568888888774 8888888865   334445555444443332111     1  123457888873211     1    


Q ss_pred             HHHHHHHHhcccCCcEEEEeeccC
Q 046488          407 DFILYDWDRVLRPGGLLWIDSFFC  430 (480)
Q Consensus       407 ~~~L~EI~RVLKPGG~fiI~~f~~  430 (480)
                      ...+.+...+|||||.+++.....
T Consensus        69 ~~~~~~~~~~l~~~G~~v~vg~~~   92 (130)
T PF00107_consen   69 GDTLQEAIKLLRPGGRIVVVGVYG   92 (130)
T ss_dssp             HHHHHHHHHHEEEEEEEEEESSTS
T ss_pred             HHHHHHHHHHhccCCEEEEEEccC
Confidence            248999999999999999886554

1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....

>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine

Probab=82.46  E-value=7.5  Score=40.62  Aligned_cols=20  Identities=20%  Similarity=0.185  Sum_probs=12.7

Q ss_pred             cCCCCCCCccchheeccccc
Q 046488          379 QRVPFFDNTLDLIHTTRFLD  398 (480)
Q Consensus       379 e~LPFpd~SFDlV~ss~vL~  398 (480)
                      ..==||++|.|++|++.+||
T Consensus        99 y~rLfP~~Svh~~~Ss~alH  118 (334)
T PF03492_consen   99 YGRLFPSNSVHFGHSSYALH  118 (334)
T ss_dssp             TS--S-TT-EEEEEEES-TT
T ss_pred             hhccCCCCceEEEEEechhh
Confidence            33348899999999999885

Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.

>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology

Probab=81.67  E-value=43  Score=33.81  Aligned_cols=137  Identities=15%  Similarity=0.223  Sum_probs=71.3

Q ss_pred             eEEEECCCCcHHHHHHhhCCCEEE-EEecCCChhHHHHHHHhCCCCeeeecccCCCCC--CCccchheeccccc-----C
Q 046488          328 IGLDFSIGTGTFAARMREFNVTLV-SAIINLGAPFNEMIALRGLVPLYITINQRVPFF--DNTLDLIHTTRFLD-----G  399 (480)
Q Consensus       328 ~VLDVGCGtG~fAa~Lae~gV~Vv-~vd~d~~~~~~~~iA~rglip~~~~~ae~LPFp--d~SFDlV~ss~vL~-----h  399 (480)
                      +|+|+-||.|.+...+.+.|..++ +++.+  ..+.......-.-..+.++.+.+.-.  ...+|+++.+.--.     .
T Consensus         2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~--~~a~~~~~~N~~~~~~~~Di~~~~~~~~~~~~D~l~~gpPCq~fS~ag   79 (275)
T cd00315           2 RVIDLFAGIGGFRLGLEKAGFEIVAANEID--KSAAETYEANFPNKLIEGDITKIDEKDFIPDIDLLTGGFPCQPFSIAG   79 (275)
T ss_pred             cEEEEccCcchHHHHHHHcCCEEEEEEeCC--HHHHHHHHHhCCCCCccCccccCchhhcCCCCCEEEeCCCChhhhHHh
Confidence            599999999999998888887754 34433  23333332221111233443333221  35699999753111     1


Q ss_pred             ----ccChhcHHHHHHHHHh---cccCCcEEEEe---eccC--ChhhHHHHHHHHHHcCceeeEEEEeeccC----CCCc
Q 046488          400 ----WIDFVLLDFILYDWDR---VLRPGGLLWID---SFFC--AKEDMNDYLEVFKMLKYKKHKWVVVPKRD----KDDR  463 (480)
Q Consensus       400 ----~~d~~~l~~~L~EI~R---VLKPGG~fiI~---~f~~--~~edL~~~~~~l~~lGfkkl~W~~~~k~d----~~~~  463 (480)
                          ..+..  ..++.++.|   .+||- +|++-   .+..  ..+.++.+...++.+||. +.|.+..-.+    +.+.
T Consensus        80 ~~~~~~d~r--~~L~~~~~~~i~~~~P~-~~v~ENV~g~~~~~~~~~~~~i~~~l~~~GY~-~~~~~l~a~~~GvPQ~R~  155 (275)
T cd00315          80 KRKGFEDTR--GTLFFEIIRILKEKKPK-YFLLENVKGLLTHDNGNTLKVILNTLEELGYN-VYWKLLNASDYGVPQNRE  155 (275)
T ss_pred             hcCCCCCch--HHHHHHHHHHHHhcCCC-EEEEEcCcchhccCchHHHHHHHHHHHhCCcE-EEEEEEEHHHcCCCCCCc
Confidence                11111  234444444   44666 33333   2222  123456788889999997 5555543222    1344


Q ss_pred             ceeEEEE
Q 046488          464 EVFFSAV  470 (480)
Q Consensus       464 E~~lsav  470 (480)
                      -+|+.++
T Consensus       156 R~~~ia~  162 (275)
T cd00315         156 RVFIIGI  162 (275)
T ss_pred             EEEEEEE
Confidence            4555544

Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.

>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]

Probab=80.70  E-value=8.6  Score=41.84  Aligned_cols=106  Identities=14%  Similarity=0.135  Sum_probs=55.9

Q ss_pred             CCCCCCCeEEEECCCCcHHHHHHhhC-CCEEEEEecCCChhHHH----HHHHhCCCCeeee--cccCCC---CCCCccch
Q 046488          321 IKPGEIRIGLDFSIGTGTFAARMREF-NVTLVSAIINLGAPFNE----MIALRGLVPLYIT--INQRVP---FFDNTLDL  390 (480)
Q Consensus       321 l~~g~iR~VLDVGCGtG~fAa~Lae~-gV~Vv~vd~d~~~~~~~----~iA~rglip~~~~--~ae~LP---Fpd~SFDl  390 (480)
                      +.|.+..+|||+.+-.|+=+.++|.. +-+.+-++.+.......    .+.+-|.-+.++.  +...+|   |+. +||-
T Consensus       237 L~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~ntiv~n~D~~ef~~~~~~~-~fDR  315 (460)
T KOG1122|consen  237 LDPQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVTNTIVSNYDGREFPEKEFPG-SFDR  315 (460)
T ss_pred             cCCCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCCceEEEccCcccccccccCc-ccce
Confidence            44444448999999999755554442 22333344443322222    2233343333332  233444   555 9999


Q ss_pred             he----ecc--cccC-----ccC-h-------hcHHHHHHHHHhcccCCcEEEEee
Q 046488          391 IH----TTR--FLDG-----WID-F-------VLLDFILYDWDRVLRPGGLLWIDS  427 (480)
Q Consensus       391 V~----ss~--vL~h-----~~d-~-------~~l~~~L~EI~RVLKPGG~fiI~~  427 (480)
                      |.    |+.  ++.-     |.. .       ..-.++|......+||||+++.+.
T Consensus       316 VLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYST  371 (460)
T KOG1122|consen  316 VLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYST  371 (460)
T ss_pred             eeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEe
Confidence            87    444  2211     000 0       001346777788899999998874

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	480
3e23_A	211	Uncharacterized protein RPA2492; alpha-beta protei	99.64
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	99.62
3pfg_A	263	N-methyltransferase; N,N-dimethyltransferase, SAM	99.62
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	99.62
3h2b_A	203	SAM-dependent methyltransferase; alpha-beta protei	99.61
2p7i_A	250	Hypothetical protein; putative methyltransferase,	99.6
4hg2_A	257	Methyltransferase type 11; structural genomics, PS	99.6
1y8c_A	246	S-adenosylmethionine-dependent methyltransferase;	99.6
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	99.58
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	99.58
1xxl_A	239	YCGJ protein; structural genomics, protein structu	99.58
3ofk_A	216	Nodulation protein S; NODS, N-methyltransferase, S	99.58
3sm3_A	235	SAM-dependent methyltransferases; NESG, structural	99.57
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	99.56
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	99.56
1pjz_A	203	Thiopurine S-methyltransferase; polymorphism, S-ad	99.56
3dli_A	240	Methyltransferase; PSI-II, NYSGXRC, structural gen	99.56
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	99.56
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	99.56
3jwg_A	219	HEN1, methyltransferase type 12; 1.90A {Clostridiu	99.56
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	99.55
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	99.55
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	99.54
4gek_A	261	TRNA (CMO5U34)-methyltransferase; structural genom	99.54
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	99.54
2xvm_A	199	Tellurite resistance protein TEHB; antibiotic resi	99.54
3i9f_A	170	Putative type 11 methyltransferase; structural gen	99.54
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	99.53
2ex4_A	241	Adrenal gland protein AD-003; methyltransferase, s	99.53
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	99.53
1xtp_A	254	LMAJ004091AAA; SGPP, structural genomics, PSI, pro	99.53
2a14_A	263	Indolethylamine N-methyltransferase; SGC,INMT, str	99.53
3thr_A	293	Glycine N-methyltransferase; GNMT, folate, methylt	99.52
3cc8_A	230	Putative methyltransferase; structural genomics, j	99.52
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	99.52
2zfu_A	215	Nucleomethylin, cerebral protein 1; nucleolar prot	99.52
4htf_A	285	S-adenosylmethionine-dependent methyltransferase;	99.52
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	99.52
3f4k_A	257	Putative methyltransferase; structural genomics, P	99.52
3ege_A	261	Putative methyltransferase from antibiotic biosyn	99.52
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	99.51
3vc1_A	312	Geranyl diphosphate 2-C-methyltransferase; rossman	99.51
2yqz_A	263	Hypothetical protein TTHA0223; RNA methyltransfera	99.5
2p8j_A	209	S-adenosylmethionine-dependent methyltransferase;	99.49
3g2m_A	299	PCZA361.24; SAM-dependent methyltransferase, glyco	99.49
2i62_A	265	Nicotinamide N-methyltransferase; structural genom	99.49
3hem_A	302	Cyclopropane-fatty-acyl-phospholipid synthase 2; p	99.49
3lcc_A	235	Putative methyl chloride transferase; halide methy	99.49
3ocj_A	305	Putative exported protein; structural genomics, PS	99.48
1kpg_A	287	CFA synthase;, cyclopropane-fatty-acyl-phospholipi	99.48
1vlm_A	219	SAM-dependent methyltransferase; possible histamin	99.48
3bxo_A	239	N,N-dimethyltransferase; desosamine, sugar, carboh	99.47
3gu3_A	284	Methyltransferase; alpha-beta protein, structural	99.47
3d2l_A	243	SAM-dependent methyltransferase; ZP_00538691.1, st	99.47
2gb4_A	252	Thiopurine S-methyltransferase; 18204406, thiopuri	99.47
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	99.46
3jwh_A	217	HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena	99.46
4e2x_A	416	TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s	99.45
4fsd_A	383	Arsenic methyltransferase; rossmann fold; 1.75A {C	99.45
2kw5_A	202	SLR1183 protein; structural genomics, northeast st	99.45
2p35_A	259	Trans-aconitate 2-methyltransferase; SAM dependent	99.44
2gs9_A	211	Hypothetical protein TT1324; methyl transferase, s	99.41
2fk8_A	318	Methoxy mycolic acid synthase 4; S-adenosylmethion	99.41
1zx0_A	236	Guanidinoacetate N-methyltransferase; structural g	99.41
3g07_A	292	7SK snRNA methylphosphate capping enzyme; structur	99.4
3m70_A	286	Tellurite resistance protein TEHB homolog; structu	99.4
2g72_A	289	Phenylethanolamine N-methyltransferase; HET: SAM F	99.39
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	99.39
2aot_A	292	HMT, histamine N-methyltransferase; classic methyl	99.39
3g5t_A	299	Trans-aconitate 3-methyltransferase; structural ge	99.38
2avn_A	260	Ubiquinone/menaquinone biosynthesis methyltransfe	99.37
1ri5_A	298	MRNA capping enzyme; methyltransferase, M7G, messe	99.36
3dp7_A	363	SAM-dependent methyltransferase; structural genomi	99.34
1ej0_A	180	FTSJ; methyltransferase, adoMet, adenosyl methioni	99.34
3bkx_A	275	SAM-dependent methyltransferase; YP_807781.1, cycl	99.34
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	99.32
2r3s_A	335	Uncharacterized protein; methyltransferase domain,	99.31
2pxx_A	215	Uncharacterized protein MGC2408; structural genomi	99.31
1xdz_A	240	Methyltransferase GIDB; MCSG, protein structure in	99.31
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	99.31
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	99.3
3grz_A	205	L11 mtase, ribosomal protein L11 methyltransferase	99.3
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	99.3
3orh_A	236	Guanidinoacetate N-methyltransferase; structura ge	99.3
1qzz_A	374	RDMB, aclacinomycin-10-hydroxylase; anthracycline,	99.29
1wzn_A	252	SAM-dependent methyltransferase; structural genomi	99.28
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	99.28
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	99.28
3dou_A	191	Ribosomal RNA large subunit methyltransferase J; c	99.27
1dus_A	194	MJ0882; hypothetical protein, methanococcus jannas	99.27
1x19_A	359	CRTF-related protein; methyltransferase, bacterioc	99.27
3i53_A	332	O-methyltransferase; CO-complex, rossmann-like fol	99.26
2vdw_A	302	Vaccinia virus capping enzyme D1 subunit; nucleoti	99.26
3iv6_A	261	Putative Zn-dependent alcohol dehydrogenase; alpha	99.25
1tw3_A	360	COMT, carminomycin 4-O-methyltransferase; anthracy	99.25
3lpm_A	259	Putative methyltransferase; structural genomics, p	99.25
2plw_A	201	Ribosomal RNA methyltransferase, putative; malaria	99.25
3ggd_A	245	SAM-dependent methyltransferase; YP_325210.1, stru	99.25
4df3_A	233	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	99.25
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	99.24
3lst_A	348	CALO1 methyltransferase; calicheamicin, enediyne,	99.24
3mcz_A	352	O-methyltransferase; adomet_mtases, S-adenosylmeth	99.24
3reo_A	368	(ISO)eugenol O-methyltransferase; directed evoluti	99.23
3q87_B	170	N6 adenine specific DNA methylase; SAM-methyltrans	99.23
2ld4_A	176	Anamorsin; methyltransferase-like fold, alpha/beta	99.23
3hp7_A	291	Hemolysin, putative; structural genomics, APC64019	99.22
3evz_A	230	Methyltransferase; NYSGXRC, NEW YORK SGX research	99.22
3gwz_A	369	MMCR; methyltransferase, mitomycin, S-adenosyl met	99.22
3htx_A	950	HEN1; HEN1, small RNA methyltransferase, protein-R	99.21
2ipx_A	233	RRNA 2'-O-methyltransferase fibrillarin; FBL, stru	99.21
1yzh_A	214	TRNA (guanine-N(7)-)-methyltransferase; alpha-beta	99.2
2ip2_A	334	Probable phenazine-specific methyltransferase; pyo	99.2
1nt2_A	210	Fibrillarin-like PRE-rRNA processing protein; adeM	99.2
1fbn_A	230	MJ fibrillarin homologue; MJ proteins, ribosomal R	99.2
3opn_A	232	Putative hemolysin; structural genomics, PSI-2, pr	99.19
3q7e_A	349	Protein arginine N-methyltransferase 1; HET: SAH;	99.18
3p9c_A	364	Caffeic acid O-methyltransferase; S-adenosylmethio	99.18
3g89_A	249	Ribosomal RNA small subunit methyltransferase G; 1	99.18
3bgv_A	313	MRNA CAP guanine-N7 methyltransferase; alternative	99.17
2pwy_A	258	TRNA (adenine-N(1)-)-methyltransferase; mtase, ado	99.17
3mq2_A	218	16S rRNA methyltransferase; methyltranferase, ribo	99.17
1fp1_D	372	Isoliquiritigenin 2'-O-methyltransferase; protein-	99.17
2nyu_A	196	Putative ribosomal RNA methyltransferase 2; SAM, s	99.16
2nxc_A	254	L11 mtase, ribosomal protein L11 methyltransferase	99.15
1fp2_A	352	Isoflavone O-methyltransferase; protein-product co	99.14
2fca_A	213	TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac	99.14
2fyt_A	340	Protein arginine N-methyltransferase 3; structural	99.14
2yxd_A	183	Probable cobalt-precorrin-6Y C(15)-methyltransfer	99.14
4a6d_A	353	Hydroxyindole O-methyltransferase; melatonin, circ	99.12
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	99.12
3r0q_C	376	Probable protein arginine N-methyltransferase 4.2;	99.12
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	99.12
4dzr_A	215	Protein-(glutamine-N5) methyltransferase, release	99.11
3lbf_A	210	Protein-L-isoaspartate O-methyltransferase; modifi	99.11
1ixk_A	315	Methyltransferase; open beta sheet; 1.90A {Pyrococ	99.1
3uwp_A	438	Histone-lysine N-methyltransferase, H3 lysine-79;	99.1
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	99.09
1af7_A	274	Chemotaxis receptor methyltransferase CHER; chemot	99.09
1yb2_A	275	Hypothetical protein TA0852; structural genomics,	99.09
1vbf_A	231	231AA long hypothetical protein-L-isoaspartate O-	99.09
1g6q_1	328	HnRNP arginine N-methyltransferase; SAM-binding do	99.08
3p9n_A	189	Possible methyltransferase (methylase); RV2966C, a	99.08
3p2e_A	225	16S rRNA methylase; methyltransferase, transferase	99.08
3gdh_A	241	Trimethylguanosine synthase homolog; M7G, CAP, dim	99.08
2qe6_A	274	Uncharacterized protein TFU_2867; putative methylt	99.06
2oxt_A	265	Nucleoside-2'-O-methyltransferase; flavivirus, vir	99.06
1zg3_A	358	Isoflavanone 4'-O-methyltransferase; rossman fold,	99.05
3u81_A	221	Catechol O-methyltransferase; neurotransmitter deg	99.05
1jsx_A	207	Glucose-inhibited division protein B; methyltransf	99.04
1i9g_A	280	Hypothetical protein RV2118C; mtase, adoMet, cryst	99.04
2wa2_A	276	Non-structural protein 5; transferase, S-adenosyl-	99.04
2y1w_A	348	Histone-arginine methyltransferase CARM1; histone	99.03
3id6_C	232	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	99.02
3tfw_A	248	Putative O-methyltransferase; PSI-biology, nysgrc,	99.01
3bwc_A	304	Spermidine synthase; SAM, SGPP, structura genomics	99.01
2p41_A	305	Type II methyltransferase; vizier, viral enzymes i	99.0
2b3t_A	276	Protein methyltransferase HEMK; translation termin	99.0
3dmg_A	381	Probable ribosomal RNA small subunit methyltransf;	98.99
2frn_A	278	Hypothetical protein PH0793; structural genomics,	98.99
2ozv_A	260	Hypothetical protein ATU0636; structural genomics,	98.99
3dxy_A	218	TRNA (guanine-N(7)-)-methyltransferase; rossmann f	98.99
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	98.98
3ckk_A	235	TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-	98.97
3duw_A	223	OMT, O-methyltransferase, putative; alternating of	98.95
1o9g_A	250	RRNA methyltransferase; antibiotic resistance, Se-	98.95
3ntv_A	232	MW1564 protein; rossmann fold, putative methyltran	98.95
2yxe_A	215	Protein-L-isoaspartate O-methyltransferase; rossma	98.94
2ift_A	201	Putative methylase HI0767; NESG, Y767_haein, struc	98.94
1dl5_A	317	Protein-L-isoaspartate O-methyltransferase; isoasp	98.94
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	98.93
3sso_A	419	Methyltransferase; macrolide, natural product, ros	98.93
2fhp_A	187	Methylase, putative; alpha-beta-alpha sandwich, st	98.93
2h00_A	254	Methyltransferase 10 domain containing protein; st	98.92
2esr_A	177	Methyltransferase; structural genomics, hypothetic	98.91
3tr6_A	225	O-methyltransferase; cellular processes; HET: SAH;	98.91
2bm8_A	236	Cephalosporin hydroxylase CMCI; cephamycin biosynt	98.9
1ws6_A	171	Methyltransferase; structural genomics, riken stru	98.89
3bzb_A	281	Uncharacterized protein; RED ALGA, protein structu	98.89
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	98.89
2xyq_A	290	Putative 2'-O-methyl transferase; transferase-vira	98.89
2b25_A	336	Hypothetical protein; structural genomics, methyl	98.88
1i1n_A	226	Protein-L-isoaspartate O-methyltransferase; S-aden	98.87
2yxl_A	450	PH0851 protein, 450AA long hypothetical FMU protei	98.87
1sqg_A	429	SUN protein, FMU protein; rossmann-fold, mixed bet	98.87
2gpy_A	233	O-methyltransferase; structural genomics, PSI, pro	98.87
1jg1_A	235	PIMT;, protein-L-isoaspartate O-methyltransferase;	98.85
2pjd_A	343	Ribosomal RNA small subunit methyltransferase C; g	98.84
3c3p_A	210	Methyltransferase; NP_951602.1, structural genomic	98.84
2fpo_A	202	Methylase YHHF; structural genomics, putative meth	98.83
2pbf_A	227	Protein-L-isoaspartate O-methyltransferase beta-A	98.83
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	98.81
1g8a_A	227	Fibrillarin-like PRE-rRNA processing protein; rRNA	98.81
1ne2_A	200	Hypothetical protein TA1320; structural genomics,	98.81
3r3h_A	242	O-methyltransferase, SAM-dependent; structural gen	98.81
3b3j_A	480	Histone-arginine methyltransferase CARM1; protein	98.8
3ajd_A	274	Putative methyltransferase MJ0026; tRNA, M5C, ross	98.8
1r18_A	227	Protein-L-isoaspartate(D-aspartate)-O-methyltrans;	98.78
3giw_A	277	Protein of unknown function DUF574; rossmann-fold	98.78
4hc4_A	376	Protein arginine N-methyltransferase 6; HRMT1L6, S	98.78
1wy7_A	207	Hypothetical protein PH1948; seven-stranded beta s	98.78
1u2z_A	433	Histone-lysine N-methyltransferase, H3 lysine-79 s	98.78
2vdv_E	246	TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl	98.77
2hnk_A	239	SAM-dependent O-methyltransferase; modified rossma	98.77
3m6w_A	464	RRNA methylase; rRNA methyltransferase, 5-methylcy	98.76
3adn_A	294	Spermidine synthase; aminopropyltransferase, polya	98.75
3m4x_A	456	NOL1/NOP2/SUN family protein; mtase domain, PUA do	98.74
2igt_A	332	SAM dependent methyltransferase; alpha-beta sandwi	98.73
3fzg_A	200	16S rRNA methylase; methyltransferase, plasmid, tr	98.72
3dr5_A	221	Putative O-methyltransferase; Q8NRD3, CGL1119, PF0	98.72
3tma_A	354	Methyltransferase; thump domain; 2.05A {Thermus th	98.71
3a27_A	272	TYW2, uncharacterized protein MJ1557; wybutosine m	98.7
1sui_A	247	Caffeoyl-COA O-methyltransferase; rossmann fold, p	98.69
2frx_A	479	Hypothetical protein YEBU; rossmann-type S-adenosy	98.69
3cbg_A	232	O-methyltransferase; cyanobacterium; HET: SAH FER	98.68
3tm4_A	373	TRNA (guanine N2-)-methyltransferase TRM14; rossma	98.68
2qm3_A	373	Predicted methyltransferase; putative methyltransf	98.68
1iy9_A	275	Spermidine synthase; rossmann fold, structural gen	98.66
2o07_A	304	Spermidine synthase; structural genomics, structur	98.64
3gjy_A	317	Spermidine synthase; APC62791, structural genomics	98.64
3lec_A	230	NADB-rossmann superfamily protein; PSI, MCSG, stru	98.64
1inl_A	296	Spermidine synthase; beta-barrel, rossman fold, st	98.63
2avd_A	229	Catechol-O-methyltransferase; structural genomics,	98.63
1xj5_A	334	Spermidine synthase 1; structural genomics, protei	98.62
1mjf_A	281	Spermidine synthase; spermidine synthetase, struct	98.62
1uir_A	314	Polyamine aminopropyltransferase; spermidien synth	98.61
2pt6_A	321	Spermidine synthase; transferase, structural genom	98.6
2b2c_A	314	Spermidine synthase; beta-alpha, transferase; 2.50	98.59
3gnl_A	244	Uncharacterized protein, DUF633, LMOF2365_1472; st	98.59
3evf_A	277	RNA-directed RNA polymerase NS5; NS5 methyltransfe	98.59
2i7c_A	283	Spermidine synthase; transferase, structural genom	98.56
3kr9_A	225	SAM-dependent methyltransferase; class I rossmann-	98.56
3c3y_A	237	Pfomt, O-methyltransferase; plant secondary metabo	98.54
1zq9_A	285	Probable dimethyladenosine transferase; SGC, struc	98.51
2yx1_A	336	Hypothetical protein MJ0883; methyl transferase, t	98.5
2cmg_A	262	Spermidine synthase; transferase, putrescine amino	98.47
1uwv_A	433	23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m	98.44
2f8l_A	344	Hypothetical protein LMO1582; structural genomics,	98.41
1nv8_A	284	HEMK protein; class I adoMet-dependent methyltrans	98.41
1yub_A	245	Ermam, rRNA methyltransferase; MLS antibiotics; NM	98.39
4dmg_A	393	Putative uncharacterized protein TTHA1493; rRNA, m	98.36
1qam_A	244	ERMC' methyltransferase; rRNA methyltransferase ER	98.35
2b78_A	385	Hypothetical protein SMU.776; structure genomics,	98.34
2ih2_A	421	Modification methylase TAQI; DNA, DNA methyltransf	98.34
3k6r_A	278	Putative transferase PH0793; structural genomics,	98.31
2h1r_A	299	Dimethyladenosine transferase, putative; SGC toron	98.29
2as0_A	396	Hypothetical protein PH1915; RNA methyltransferase	98.28
3c0k_A	396	UPF0064 protein YCCW; PUA domain, adoMet dependent	98.28
1wxx_A	382	TT1595, hypothetical protein TTHA1280; thermus the	98.27
2jjq_A	425	Uncharacterized RNA methyltransferase pyrab10780;	98.21
3frh_A	253	16S rRNA methylase; methyltransferase domain, heli	98.19
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	98.17
3lcv_B	281	Sisomicin-gentamicin resistance methylase SGM; ant	98.12
3gru_A	295	Dimethyladenosine transferase; rossman fold, ribos	98.04
2b9e_A	309	NOL1/NOP2/SUN domain family, member 5 isoform 2; m	98.01
3b5i_A	374	S-adenosyl-L-methionine:salicylic acid carboxyl me	98.01
2okc_A	445	Type I restriction enzyme stysji M protein; NP_813	97.99
3gcz_A	282	Polyprotein; flavivirus, RNA capping, methyltransf	97.97
4auk_A	375	Ribosomal RNA large subunit methyltransferase M; Y	97.96
3bt7_A	369	TRNA (uracil-5-)-methyltransferase; methyluridine,	97.9
2efj_A	384	3,7-dimethylxanthine methyltransferase; SAM-depend	97.88
2qfm_A	364	Spermine synthase; spermidine aminopropyltransfera	97.84
3eld_A	300	Methyltransferase; flavivirus, RNA capping, guanyl	97.77
3tqs_A	255	Ribosomal RNA small subunit methyltransferase A; p	97.71
3k0b_A	393	Predicted N6-adenine-specific DNA methylase; methy	97.68
3fut_A	271	Dimethyladenosine transferase; methyltransferase,	97.62
1m6e_X	359	S-adenosyl-L-methionnine:salicylic acid carboxyl m	97.62
3ldu_A	385	Putative methylase; structural genomics, PSI-2, pr	97.61
2r6z_A	258	UPF0341 protein in RSP 3' region; alpha-beta prote	97.58
2px2_A	269	Genome polyprotein [contains: capsid protein C (co	97.57
3ldg_A	384	Putative uncharacterized protein SMU.472; YPSC, me	97.57
2oyr_A	258	UPF0341 protein YHIQ; alpha-beta protein, structur	97.46
3ftd_A	249	Dimethyladenosine transferase; KSGA, rossmann-like	97.39
2dul_A	378	N(2),N(2)-dimethylguanosine tRNA methyltransferas;	97.38
4gqb_A	637	Protein arginine N-methyltransferase 5; TIM barrel	97.26
2ar0_A	541	M.ecoki, type I restriction enzyme ecoki M protein	97.25
3ua3_A	745	Protein arginine N-methyltransferase 5; TIM-barrel	97.21
2qy6_A	257	UPF0209 protein YFCK; structural genomics, unknown	97.2
3uzu_A	279	Ribosomal RNA small subunit methyltransferase A; s	97.18
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	97.13
3cvo_A	202	Methyltransferase-like protein of unknown functio;	97.01
3axs_A	392	Probable N(2),N(2)-dimethylguanosine tRNA methylt	96.99
1m6y_A	301	S-adenosyl-methyltransferase MRAW; SAM-dependent m	96.93
1qyr_A	252	KSGA, high level kasugamycin resistance protein, S	96.92
2wk1_A	282	NOVP; transferase, O-methyltransferase, novobiocin	96.87
3lkz_A	321	Non-structural protein 5; flavivirus, methyltransf	96.86
3khk_A	544	Type I restriction-modification system methylation	96.85
3lkd_A	542	Type I restriction-modification system methyltrans	96.75
3o4f_A	294	Spermidine synthase; aminopropyltransferase, polya	96.62
3ll7_A	410	Putative methyltransferase; methytransferase, stru	96.61
2k4m_A	153	TR8_protein, UPF0146 protein MTH_1000; alpha+beta,	96.56
3p8z_A	267	Mtase, non-structural protein 5; methyltransferase	96.17
4fzv_A	359	Putative methyltransferase NSUN4; mterf fold, meth	96.14
3s1s_A	878	Restriction endonuclease bpusi; PD--(D/E)XK cataly	96.07
3r24_A	344	NSP16, 2'-O-methyl transferase; methyltransferase,	95.97
3c6k_A	381	Spermine synthase; spermidine aminopropyltransfera	94.81
2zig_A	297	TTHA0409, putative modification methylase; methylt	94.51
2vz8_A	2512	Fatty acid synthase; transferase, phosphopantethei	92.88
1wg8_A	285	Predicted S-adenosylmethionine-dependent methyltra	92.74
2dph_A	398	Formaldehyde dismutase; dismutation of aldehydes,	91.66
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	91.62
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	91.15
3vyw_A	308	MNMC2; tRNA wobble uridine, modification enzyme, g	90.93
3ufb_A	530	Type I restriction-modification system methyltran	90.57
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	89.83
1g60_A	260	Adenine-specific methyltransferase MBOIIA; structu	89.78
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	89.52
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	89.41
1pqw_A	198	Polyketide synthase; rossmann fold, dimer, structu	89.12
1kol_A	398	Formaldehyde dehydrogenase; oxidoreductase; HET: N	89.05
1g55_A	343	DNA cytosine methyltransferase DNMT2; human DNA me	88.88
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	88.47
2c7p_A	327	Modification methylase HHAI; DNA methyltransferase	88.38
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	87.02
2j3h_A	345	NADP-dependent oxidoreductase P1; double bond redu	86.5
1v3u_A	333	Leukotriene B4 12- hydroxydehydrogenase/prostaglan	86.45
1cdo_A	374	Alcohol dehydrogenase; oxidoreductase, oxidoreduct	86.18
4b7c_A	336	Probable oxidoreductase; NADP cofactor, rossmann f	85.91
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	85.78
1p0f_A	373	NADP-dependent alcohol dehydrogenase; ADH topology	85.58
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	85.13
1e3i_A	376	Alcohol dehydrogenase, class II; HET: NAD; 2.08A {	85.0
2jhf_A	374	Alcohol dehydrogenase E chain; oxidoreductase, met	84.91
3pvc_A	689	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	84.66
3goh_A	315	Alcohol dehydrogenase, zinc-containing; NP_718042.	84.46
2hcy_A	347	Alcohol dehydrogenase 1; tetramer of asymmetric di	84.32
1boo_A	323	Protein (N-4 cytosine-specific methyltransferase P	84.31
2hwk_A	320	Helicase NSP2; rossman fold, alpha/beta/alpha, mul	84.3
3gms_A	340	Putative NADPH:quinone reductase; structural genom	84.28
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	84.04
2fzw_A	373	Alcohol dehydrogenase class III CHI chain; S-nitro	84.01
3uko_A	378	Alcohol dehydrogenase class-3; alcohol dehydrogena	83.23
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	82.95
3qv2_A	327	5-cytosine DNA methyltransferase; DNMT2, ehmeth; H	82.43
1eg2_A	319	Modification methylase RSRI; rossmann fold, exocyc	82.09
3ubt_Y	331	Modification methylase HAEIII; protein-DNA complex	81.39
3jv7_A	345	ADH-A; dehydrogenase, nucleotide binding, rossmann	81.35
1piw_A	360	Hypothetical zinc-type alcohol dehydrogenase- like	81.06
3g7u_A	376	Cytosine-specific methyltransferase; DNA-binding,	80.76
3nx4_A	324	Putative oxidoreductase; csgid, structural genomic	80.34
4dvj_A	363	Putative zinc-dependent alcohol dehydrogenase Pro;	80.33

>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}

Probab=99.64  E-value=2.6e-15  Score=138.29  Aligned_cols=157  Identities=14%  Similarity=0.073  Sum_probs=110.1

Q ss_pred             hHHHhcC-CCCCCCCeEEEECCCCcHHHHHHhhCCCEEEEEecCCChhHHHHHHHhCCCCeeeecccCCCCCCCccchhe
Q 046488          314 LIPEVLD-IKPGEIRIGLDFSIGTGTFAARMREFNVTLVSAIINLGAPFNEMIALRGLVPLYITINQRVPFFDNTLDLIH  392 (480)
Q Consensus       314 ~I~~vL~-l~~g~iR~VLDVGCGtG~fAa~Lae~gV~Vv~vd~d~~~~~~~~iA~rglip~~~~~ae~LPFpd~SFDlV~  392 (480)
                      .+..++. +.++  .+|||+|||+|.++..+++.+..+++++++.  .+...+..+-.+.+..++...+| ++++||+|+
T Consensus        33 ~~~~~~~~~~~~--~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~--~~~~~a~~~~~~~~~~~d~~~~~-~~~~fD~v~  107 (211)
T 3e23_A           33 TLTKFLGELPAG--AKILELGCGAGYQAEAMLAAGFDVDATDGSP--ELAAEASRRLGRPVRTMLFHQLD-AIDAYDAVW  107 (211)
T ss_dssp             HHHHHHTTSCTT--CEEEESSCTTSHHHHHHHHTTCEEEEEESCH--HHHHHHHHHHTSCCEECCGGGCC-CCSCEEEEE
T ss_pred             HHHHHHHhcCCC--CcEEEECCCCCHHHHHHHHcCCeEEEECCCH--HHHHHHHHhcCCceEEeeeccCC-CCCcEEEEE
Confidence            3444444 4444  4899999999999999999988999988752  33333322224566667778888 899999999


Q ss_pred             ecccccCccChhcHHHHHHHHHhcccCCcEEEEeeccCCh------------hhHHHHHHHHHHcC-ceeeEEEEeeccC
Q 046488          393 TTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDSFFCAK------------EDMNDYLEVFKMLK-YKKHKWVVVPKRD  459 (480)
Q Consensus       393 ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~f~~~~------------edL~~~~~~l~~lG-fkkl~W~~~~k~d  459 (480)
                      +..+++|+.+.+ +..++.++.|+|||||++++.......            -..+.+..+++..| |+.+.........
T Consensus       108 ~~~~l~~~~~~~-~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG~f~~~~~~~~~~~~  186 (211)
T 3e23_A          108 AHACLLHVPRDE-LADVLKLIWRALKPGGLFYASYKSGEGEGRDKLARYYNYPSEEWLRARYAEAGTWASVAVESSEGKG  186 (211)
T ss_dssp             ECSCGGGSCHHH-HHHHHHHHHHHEEEEEEEEEEEECCSSCEECTTSCEECCCCHHHHHHHHHHHCCCSEEEEEEEEEEC
T ss_pred             ecCchhhcCHHH-HHHHHHHHHHhcCCCcEEEEEEcCCCcccccccchhccCCCHHHHHHHHHhCCCcEEEEEEeccCCC
Confidence            999999887332 367999999999999999987432211            13467888999999 9988765543322


Q ss_pred             C-CCcceeEEEEEEeCCC
Q 046488          460 K-DDREVFFSAVLEKPPR  476 (480)
Q Consensus       460 ~-~~~E~~lsav~qKP~~  476 (480)
                      - .....++.++..||..
T Consensus       187 ~~~~~~~wl~~~~~~~~~  204 (211)
T 3e23_A          187 FDQELAQFLHVSVRKPEL  204 (211)
T ss_dssp             TTSCEEEEEEEEEECCCC
T ss_pred             CCCCCceEEEEEEecCcc
Confidence            1 2234455555666543

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41

Probab=99.62  E-value=2.7e-15  Score=142.77  Aligned_cols=131  Identities=17%  Similarity=0.217  Sum_probs=96.4

Q ss_pred             HhcCCCCCCCCeEEEECCCCcHHHHHHhhCCCEEEEEecCCChhHHHH----HHHhCC--CCeeeecccCCCCCCCccch
Q 046488          317 EVLDIKPGEIRIGLDFSIGTGTFAARMREFNVTLVSAIINLGAPFNEM----IALRGL--VPLYITINQRVPFFDNTLDL  390 (480)
Q Consensus       317 ~vL~l~~g~iR~VLDVGCGtG~fAa~Lae~gV~Vv~vd~d~~~~~~~~----iA~rgl--ip~~~~~ae~LPFpd~SFDl  390 (480)
                      +.+.+.++  .+|||+|||+|.++..+++++..+++++++.  .+...    +...+.  +.+..++++.+||++++||+
T Consensus        31 ~~l~~~~~--~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~--~~l~~a~~~~~~~~~~~v~~~~~d~~~l~~~~~~fD~  106 (260)
T 1vl5_A           31 QIAALKGN--EEVLDVATGGGHVANAFAPFVKKVVAFDLTE--DILKVARAFIEGNGHQQVEYVQGDAEQMPFTDERFHI  106 (260)
T ss_dssp             HHHTCCSC--CEEEEETCTTCHHHHHHGGGSSEEEEEESCH--HHHHHHHHHHHHTTCCSEEEEECCC-CCCSCTTCEEE
T ss_pred             HHhCCCCC--CEEEEEeCCCCHHHHHHHHhCCEEEEEeCCH--HHHHHHHHHHHhcCCCceEEEEecHHhCCCCCCCEEE
Confidence            34455444  4899999999999999999877888888652  33322    222232  44556778889999999999


Q ss_pred             heecccccCccChhcHHHHHHHHHhcccCCcEEEEeeccCCh----------------------hhHHHHHHHHHHcCce
Q 046488          391 IHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDSFFCAK----------------------EDMNDYLEVFKMLKYK  448 (480)
Q Consensus       391 V~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~f~~~~----------------------edL~~~~~~l~~lGfk  448 (480)
                      |++..+++|+.+.   ..+|.|+.|+|||||+|++..+....                      .....+.+++++.||+
T Consensus       107 V~~~~~l~~~~d~---~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~  183 (260)
T 1vl5_A          107 VTCRIAAHHFPNP---ASFVSEAYRVLKKGGQLLLVDNSAPENDAFDVFYNYVEKERDYSHHRAWKKSDWLKMLEEAGFE  183 (260)
T ss_dssp             EEEESCGGGCSCH---HHHHHHHHHHEEEEEEEEEEEEEBCSSHHHHHHHHHHHHHHCTTCCCCCBHHHHHHHHHHHTCE
T ss_pred             EEEhhhhHhcCCH---HHHHHHHHHHcCCCCEEEEEEcCCCCCHHHHHHHHHHHHhcCccccCCCCHHHHHHHHHHCCCe
Confidence            9999999999876   46999999999999999986433211                      1124577888999998


Q ss_pred             eeEEEE
Q 046488          449 KHKWVV  454 (480)
Q Consensus       449 kl~W~~  454 (480)
                      .+.+..
T Consensus       184 ~~~~~~  189 (260)
T 1vl5_A          184 LEELHC  189 (260)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            766544

>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*

Probab=99.62  E-value=2.3e-15  Score=143.41  Aligned_cols=96  Identities=17%  Similarity=0.116  Sum_probs=78.2

Q ss_pred             CeEEEECCCCcHHHHHHhhCCCEEEEEecCCChhHHHHHHHhC--CCCeeeecccCCCCCCCccchheecc-cccCccCh
Q 046488          327 RIGLDFSIGTGTFAARMREFNVTLVSAIINLGAPFNEMIALRG--LVPLYITINQRVPFFDNTLDLIHTTR-FLDGWIDF  403 (480)
Q Consensus       327 R~VLDVGCGtG~fAa~Lae~gV~Vv~vd~d~~~~~~~~iA~rg--lip~~~~~ae~LPFpd~SFDlV~ss~-vL~h~~d~  403 (480)
                      .+|||+|||+|.++..+++++..+++++++  ..+.. .+.+.  .+.+..++...+|+ +++||+|+|.. +++|+.++
T Consensus        52 ~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s--~~~~~-~a~~~~~~~~~~~~d~~~~~~-~~~fD~v~~~~~~l~~~~~~  127 (263)
T 3pfg_A           52 ASLLDVACGTGMHLRHLADSFGTVEGLELS--ADMLA-IARRRNPDAVLHHGDMRDFSL-GRRFSAVTCMFSSIGHLAGQ  127 (263)
T ss_dssp             CEEEEETCTTSHHHHHHTTTSSEEEEEESC--HHHHH-HHHHHCTTSEEEECCTTTCCC-SCCEEEEEECTTGGGGSCHH
T ss_pred             CcEEEeCCcCCHHHHHHHHcCCeEEEEECC--HHHHH-HHHhhCCCCEEEECChHHCCc-cCCcCEEEEcCchhhhcCCH
Confidence            489999999999999999998889888875  23333 33332  35566777888888 89999999998 99988765


Q ss_pred             hcHHHHHHHHHhcccCCcEEEEe
Q 046488          404 VLLDFILYDWDRVLRPGGLLWID  426 (480)
Q Consensus       404 ~~l~~~L~EI~RVLKPGG~fiI~  426 (480)
                      ..+..++.++.|+|||||+|++.
T Consensus       128 ~~~~~~l~~~~~~L~pgG~l~i~  150 (263)
T 3pfg_A          128 AELDAALERFAAHVLPDGVVVVE  150 (263)
T ss_dssp             HHHHHHHHHHHHTEEEEEEEEEC
T ss_pred             HHHHHHHHHHHHhcCCCcEEEEE
Confidence            55578999999999999999996

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}

Probab=99.62  E-value=4.4e-15  Score=137.00  Aligned_cols=148  Identities=16%  Similarity=0.127  Sum_probs=104.8

Q ss_pred             HhcCCCCCCCCeEEEECCCCcHHHHHHhhCC---CEEEEEecCCCh--hHHHHHHHhC--CCCeeeecccCCCCCCCccc
Q 046488          317 EVLDIKPGEIRIGLDFSIGTGTFAARMREFN---VTLVSAIINLGA--PFNEMIALRG--LVPLYITINQRVPFFDNTLD  389 (480)
Q Consensus       317 ~vL~l~~g~iR~VLDVGCGtG~fAa~Lae~g---V~Vv~vd~d~~~--~~~~~iA~rg--lip~~~~~ae~LPFpd~SFD  389 (480)
                      +.+.+.++  .+|||+|||+|.++..+++.+   ..+++++++...  .+...+...+  .+.+..++.+.+|+++++||
T Consensus        31 ~~~~~~~~--~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD  108 (219)
T 3dh0_A           31 KEFGLKEG--MTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKNVEVLKSEENKIPLPDNTVD  108 (219)
T ss_dssp             HHHTCCTT--CEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECBTTBCSSCSSCEE
T ss_pred             HHhCCCCC--CEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCcEEEEecccccCCCCCCCee
Confidence            34455554  489999999999999998874   688888865211  1112222233  24455667888999999999


Q ss_pred             hheecccccCccChhcHHHHHHHHHhcccCCcEEEEeeccCChh----------hHHHHHHHHHHcCceeeEEEEeeccC
Q 046488          390 LIHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDSFFCAKE----------DMNDYLEVFKMLKYKKHKWVVVPKRD  459 (480)
Q Consensus       390 lV~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~f~~~~e----------dL~~~~~~l~~lGfkkl~W~~~~k~d  459 (480)
                      +|++..+++|+.+.   ..++.++.|+|||||++++..+.....          ..+.+..+++..||+.+......   
T Consensus       109 ~v~~~~~l~~~~~~---~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~---  182 (219)
T 3dh0_A          109 FIFMAFTFHELSEP---LKFLEELKRVAKPFAYLAIIDWKKEERDKGPPPEEVYSEWEVGLILEDAGIRVGRVVEVG---  182 (219)
T ss_dssp             EEEEESCGGGCSSH---HHHHHHHHHHEEEEEEEEEEEECSSCCSSSCCGGGSCCHHHHHHHHHHTTCEEEEEEEET---
T ss_pred             EEEeehhhhhcCCH---HHHHHHHHHHhCCCeEEEEEEecccccccCCchhcccCHHHHHHHHHHCCCEEEEEEeeC---
Confidence            99999999998765   469999999999999999986543321          24668889999999987653321   


Q ss_pred             CCCcceeEEEEEEeCCC
Q 046488          460 KDDREVFFSAVLEKPPR  476 (480)
Q Consensus       460 ~~~~E~~lsav~qKP~~  476 (480)
                          ......+.+||..
T Consensus       183 ----~~~~~~~~~k~~~  195 (219)
T 3dh0_A          183 ----KYCFGVYAMIVKQ  195 (219)
T ss_dssp             ----TTEEEEEEECC--
T ss_pred             ----CceEEEEEEeccc
Confidence                1234557788755

>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.61  E-value=5e-15  Score=135.35  Aligned_cols=127  Identities=12%  Similarity=0.011  Sum_probs=97.6

Q ss_pred             CeEEEECCCCcHHHHHHhhCCCEEEEEecCCChhHHHHHHHh-CCCCeeeecccCCCCCCCccchheecccccCccChhc
Q 046488          327 RIGLDFSIGTGTFAARMREFNVTLVSAIINLGAPFNEMIALR-GLVPLYITINQRVPFFDNTLDLIHTTRFLDGWIDFVL  405 (480)
Q Consensus       327 R~VLDVGCGtG~fAa~Lae~gV~Vv~vd~d~~~~~~~~iA~r-glip~~~~~ae~LPFpd~SFDlV~ss~vL~h~~d~~~  405 (480)
                      .+|||+|||+|.++..|++++..+++++++  ..+......+ ..+.+..++.+.+|+++++||+|++..+++|+...+ 
T Consensus        43 ~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s--~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~-  119 (203)
T 3h2b_A           43 GVILDVGSGTGRWTGHLASLGHQIEGLEPA--TRLVELARQTHPSVTFHHGTITDLSDSPKRWAGLLAWYSLIHMGPGE-  119 (203)
T ss_dssp             SCEEEETCTTCHHHHHHHHTTCCEEEECCC--HHHHHHHHHHCTTSEEECCCGGGGGGSCCCEEEEEEESSSTTCCTTT-
T ss_pred             CeEEEecCCCCHHHHHHHhcCCeEEEEeCC--HHHHHHHHHhCCCCeEEeCcccccccCCCCeEEEEehhhHhcCCHHH-
Confidence            379999999999999999998888888865  2343333332 235566677888999999999999999999986322 


Q ss_pred             HHHHHHHHHhcccCCcEEEEeeccCCh-------------hhHHHHHHHHHHcCceeeEEEEee
Q 046488          406 LDFILYDWDRVLRPGGLLWIDSFFCAK-------------EDMNDYLEVFKMLKYKKHKWVVVP  456 (480)
Q Consensus       406 l~~~L~EI~RVLKPGG~fiI~~f~~~~-------------edL~~~~~~l~~lGfkkl~W~~~~  456 (480)
                      ...++.++.|+|||||++++..+....             -..+.+.++++..||+.+......
T Consensus       120 ~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~  183 (203)
T 3h2b_A          120 LPDALVALRMAVEDGGGLLMSFFSGPSLEPMYHPVATAYRWPLPELAQALETAGFQVTSSHWDP  183 (203)
T ss_dssp             HHHHHHHHHHTEEEEEEEEEEEECCSSCEEECCSSSCEEECCHHHHHHHHHHTTEEEEEEEECT
T ss_pred             HHHHHHHHHHHcCCCcEEEEEEccCCchhhhhchhhhhccCCHHHHHHHHHHCCCcEEEEEecC
Confidence            367999999999999999987543321             124678889999999988765543

>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A

Probab=99.60  E-value=5.2e-15  Score=137.32  Aligned_cols=119  Identities=13%  Similarity=0.013  Sum_probs=90.9

Q ss_pred             eEEEECCCCcHHHHHHhhCCCEEEEEecCCChhHHHHHHHhC---CCCeeeecccCCCCCCCccchheecccccCccChh
Q 046488          328 IGLDFSIGTGTFAARMREFNVTLVSAIINLGAPFNEMIALRG---LVPLYITINQRVPFFDNTLDLIHTTRFLDGWIDFV  404 (480)
Q Consensus       328 ~VLDVGCGtG~fAa~Lae~gV~Vv~vd~d~~~~~~~~iA~rg---lip~~~~~ae~LPFpd~SFDlV~ss~vL~h~~d~~  404 (480)
                      +|||||||+|.++..+++++..+++++++  ..+.. .|.+.   .+.+..++++.+ +++++||+|++..+++|+.++ 
T Consensus        45 ~vLDiGcG~G~~~~~l~~~~~~v~gvD~s--~~~~~-~a~~~~~~~v~~~~~d~~~~-~~~~~fD~v~~~~~l~~~~~~-  119 (250)
T 2p7i_A           45 NLLELGSFKGDFTSRLQEHFNDITCVEAS--EEAIS-HAQGRLKDGITYIHSRFEDA-QLPRRYDNIVLTHVLEHIDDP-  119 (250)
T ss_dssp             CEEEESCTTSHHHHHHTTTCSCEEEEESC--HHHHH-HHHHHSCSCEEEEESCGGGC-CCSSCEEEEEEESCGGGCSSH-
T ss_pred             cEEEECCCCCHHHHHHHHhCCcEEEEeCC--HHHHH-HHHHhhhCCeEEEEccHHHc-CcCCcccEEEEhhHHHhhcCH-
Confidence            69999999999999999988888888865  23333 33332   344556666666 578999999999999999876 


Q ss_pred             cHHHHHHHHH-hcccCCcEEEEeeccCCh------------------------------hhHHHHHHHHHHcCceeeEEE
Q 046488          405 LLDFILYDWD-RVLRPGGLLWIDSFFCAK------------------------------EDMNDYLEVFKMLKYKKHKWV  453 (480)
Q Consensus       405 ~l~~~L~EI~-RVLKPGG~fiI~~f~~~~------------------------------edL~~~~~~l~~lGfkkl~W~  453 (480)
                        ..+|.|+. |+|||||++++.......                              -..+.+.++++..||+.+.+.
T Consensus       120 --~~~l~~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~  197 (250)
T 2p7i_A          120 --VALLKRINDDWLAEGGRLFLVCPNANAVSRQIAVKMGIISHNSAVTEAEFAHGHRCTYALDTLERDASRAGLQVTYRS  197 (250)
T ss_dssp             --HHHHHHHHHTTEEEEEEEEEEEECTTCHHHHHHHHTTSSSSTTCCCHHHHHTTCCCCCCHHHHHHHHHHTTCEEEEEE
T ss_pred             --HHHHHHHHHHhcCCCCEEEEEcCChHHHHHHHHHHcCccccchhcccccccccccccCCHHHHHHHHHHCCCeEEEEe
Confidence              46999999 999999999987422110                              023467889999999987654

>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}

Probab=99.60  E-value=5.6e-16  Score=151.29  Aligned_cols=97  Identities=16%  Similarity=0.194  Sum_probs=77.6

Q ss_pred             CeEEEECCCCcHHHHHHhhCCCEEEEEecCCChhHHHHHHHhCCCCeeeecccCCCCCCCccchheecccccCccChhcH
Q 046488          327 RIGLDFSIGTGTFAARMREFNVTLVSAIINLGAPFNEMIALRGLVPLYITINQRVPFFDNTLDLIHTTRFLDGWIDFVLL  406 (480)
Q Consensus       327 R~VLDVGCGtG~fAa~Lae~gV~Vv~vd~d~~~~~~~~iA~rglip~~~~~ae~LPFpd~SFDlV~ss~vL~h~~d~~~l  406 (480)
                      .+|||||||+|.++..|++++..|+++|++.  .+..+......+.+..+.++.+|+++++||+|+|..++ ||.+.   
T Consensus        41 ~~vLDvGcGtG~~~~~l~~~~~~v~gvD~s~--~ml~~a~~~~~v~~~~~~~e~~~~~~~sfD~v~~~~~~-h~~~~---  114 (257)
T 4hg2_A           41 GDALDCGCGSGQASLGLAEFFERVHAVDPGE--AQIRQALRHPRVTYAVAPAEDTGLPPASVDVAIAAQAM-HWFDL---  114 (257)
T ss_dssp             SEEEEESCTTTTTHHHHHTTCSEEEEEESCH--HHHHTCCCCTTEEEEECCTTCCCCCSSCEEEEEECSCC-TTCCH---
T ss_pred             CCEEEEcCCCCHHHHHHHHhCCEEEEEeCcH--HhhhhhhhcCCceeehhhhhhhcccCCcccEEEEeeeh-hHhhH---
Confidence            4799999999999999999999999998762  33322222224556677899999999999999999998 55555   


Q ss_pred             HHHHHHHHhcccCCcEEEEeecc
Q 046488          407 DFILYDWDRVLRPGGLLWIDSFF  429 (480)
Q Consensus       407 ~~~L~EI~RVLKPGG~fiI~~f~  429 (480)
                      ..++.|+.|||||||+|++..+.
T Consensus       115 ~~~~~e~~rvLkpgG~l~~~~~~  137 (257)
T 4hg2_A          115 DRFWAELRRVARPGAVFAAVTYG  137 (257)
T ss_dssp             HHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             HHHHHHHHHHcCCCCEEEEEECC
Confidence            46999999999999999887543

>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43

Probab=99.60  E-value=1.1e-14  Score=135.41  Aligned_cols=98  Identities=17%  Similarity=0.099  Sum_probs=76.4

Q ss_pred             CCeEEEECCCCcHHHHHHhhCCCEEEEEecCCChhHHHH----HHHhC-CCCeeeecccCCCCCCCccchheecc-cccC
Q 046488          326 IRIGLDFSIGTGTFAARMREFNVTLVSAIINLGAPFNEM----IALRG-LVPLYITINQRVPFFDNTLDLIHTTR-FLDG  399 (480)
Q Consensus       326 iR~VLDVGCGtG~fAa~Lae~gV~Vv~vd~d~~~~~~~~----iA~rg-lip~~~~~ae~LPFpd~SFDlV~ss~-vL~h  399 (480)
                      ..+|||+|||+|.++..+++.+..+++++++.  .+...    ....+ .+.+..++...+|++ ++||+|++.. +++|
T Consensus        38 ~~~vLdiG~G~G~~~~~l~~~~~~~~~~D~s~--~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~-~~fD~v~~~~~~l~~  114 (246)
T 1y8c_A           38 FDDYLDLACGTGNLTENLCPKFKNTWAVDLSQ--EMLSEAENKFRSQGLKPRLACQDISNLNIN-RKFDLITCCLDSTNY  114 (246)
T ss_dssp             TTEEEEETCTTSTTHHHHGGGSSEEEEECSCH--HHHHHHHHHHHHTTCCCEEECCCGGGCCCS-CCEEEEEECTTGGGG
T ss_pred             CCeEEEeCCCCCHHHHHHHHCCCcEEEEECCH--HHHHHHHHHHhhcCCCeEEEecccccCCcc-CCceEEEEcCccccc
Confidence            35899999999999999999988888888652  22222    22222 345566667788887 8999999998 9999


Q ss_pred             ccChhcHHHHHHHHHhcccCCcEEEEe
Q 046488          400 WIDFVLLDFILYDWDRVLRPGGLLWID  426 (480)
Q Consensus       400 ~~d~~~l~~~L~EI~RVLKPGG~fiI~  426 (480)
                      +.++.....++.++.|+|||||++++.
T Consensus       115 ~~~~~~~~~~l~~~~~~L~pgG~l~~~  141 (246)
T 1y8c_A          115 IIDSDDLKKYFKAVSNHLKEGGVFIFD  141 (246)
T ss_dssp             CCSHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred             cCCHHHHHHHHHHHHHhcCCCcEEEEE
Confidence            865444578999999999999999984

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.58  E-value=2.3e-14  Score=128.16  Aligned_cols=144  Identities=15%  Similarity=0.052  Sum_probs=102.9

Q ss_pred             CeEEEECCCCcHHHHHHhhCCCEEEEEecCCChhHHHHHHHhC--CCCeeeecccCCCCCCCccchheec-ccccCccCh
Q 046488          327 RIGLDFSIGTGTFAARMREFNVTLVSAIINLGAPFNEMIALRG--LVPLYITINQRVPFFDNTLDLIHTT-RFLDGWIDF  403 (480)
Q Consensus       327 R~VLDVGCGtG~fAa~Lae~gV~Vv~vd~d~~~~~~~~iA~rg--lip~~~~~ae~LPFpd~SFDlV~ss-~vL~h~~d~  403 (480)
                      .+|||+|||+|.++..+++.+..+++++++   +.....+.+.  .+.+..++...+++++++||+|++. .+++++...
T Consensus        48 ~~vLdiG~G~G~~~~~l~~~~~~v~~~D~~---~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~~~~~~~~~~~  124 (195)
T 3cgg_A           48 AKILDAGCGQGRIGGYLSKQGHDVLGTDLD---PILIDYAKQDFPEARWVVGDLSVDQISETDFDLIVSAGNVMGFLAED  124 (195)
T ss_dssp             CEEEEETCTTTHHHHHHHHTTCEEEEEESC---HHHHHHHHHHCTTSEEEECCTTTSCCCCCCEEEEEECCCCGGGSCHH
T ss_pred             CeEEEECCCCCHHHHHHHHCCCcEEEEcCC---HHHHHHHHHhCCCCcEEEcccccCCCCCCceeEEEECCcHHhhcChH
Confidence            489999999999999999998889888876   2223333332  2455666777788889999999998 667666433


Q ss_pred             hcHHHHHHHHHhcccCCcEEEEeeccCChhhHHHHHHHHHHcCceeeEEEEeeccCC-CCcceeEEEEEEeC
Q 046488          404 VLLDFILYDWDRVLRPGGLLWIDSFFCAKEDMNDYLEVFKMLKYKKHKWVVVPKRDK-DDREVFFSAVLEKP  474 (480)
Q Consensus       404 ~~l~~~L~EI~RVLKPGG~fiI~~f~~~~edL~~~~~~l~~lGfkkl~W~~~~k~d~-~~~E~~lsav~qKP  474 (480)
                       ....++.++.|+|||||++++..........+.+...++..||+............ .....++..+++|+
T Consensus       125 -~~~~~l~~~~~~l~~~G~l~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~~~~~~~v~~k~  195 (195)
T 3cgg_A          125 -GREPALANIHRALGADGRAVIGFGAGRGWVFGDFLEVAERVGLELENAFESWDLKPFVQGSEFLVAVFTKK  195 (195)
T ss_dssp             -HHHHHHHHHHHHEEEEEEEEEEEETTSSCCHHHHHHHHHHHTEEEEEEESSTTCCBCCTTCSEEEEEEEEC
T ss_pred             -HHHHHHHHHHHHhCCCCEEEEEeCCCCCcCHHHHHHHHHHcCCEEeeeecccccCcCCCCCcEEEEEEecC
Confidence             23679999999999999999875444334556788889999998765433211111 22344667788886

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*

Probab=99.58  E-value=1.7e-14  Score=136.06  Aligned_cols=124  Identities=15%  Similarity=0.093  Sum_probs=94.7

Q ss_pred             CeEEEECCCCcHHHHHHhhC-CCEEEEEecCCChhHHHHHHHhC-----CCCeeeecccCCCCCCCccchheecccccCc
Q 046488          327 RIGLDFSIGTGTFAARMREF-NVTLVSAIINLGAPFNEMIALRG-----LVPLYITINQRVPFFDNTLDLIHTTRFLDGW  400 (480)
Q Consensus       327 R~VLDVGCGtG~fAa~Lae~-gV~Vv~vd~d~~~~~~~~iA~rg-----lip~~~~~ae~LPFpd~SFDlV~ss~vL~h~  400 (480)
                      .+|||+|||+|.++..++++ +..+++++++   +.....+.+.     .+.+..++...+|+++++||+|++..+++|+
T Consensus        57 ~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s---~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~  133 (266)
T 3ujc_A           57 SKVLDIGSGLGGGCMYINEKYGAHTHGIDIC---SNIVNMANERVSGNNKIIFEANDILTKEFPENNFDLIYSRDAILAL  133 (266)
T ss_dssp             CEEEEETCTTSHHHHHHHHHHCCEEEEEESC---HHHHHHHHHTCCSCTTEEEEECCTTTCCCCTTCEEEEEEESCGGGS
T ss_pred             CEEEEECCCCCHHHHHHHHHcCCEEEEEeCC---HHHHHHHHHHhhcCCCeEEEECccccCCCCCCcEEEEeHHHHHHhc
Confidence            48999999999999999987 8889998876   3333344433     2345566788899999999999999999998


Q ss_pred             cChhcHHHHHHHHHhcccCCcEEEEeeccCCh-------------------hhHHHHHHHHHHcCceeeEEEE
Q 046488          401 IDFVLLDFILYDWDRVLRPGGLLWIDSFFCAK-------------------EDMNDYLEVFKMLKYKKHKWVV  454 (480)
Q Consensus       401 ~d~~~l~~~L~EI~RVLKPGG~fiI~~f~~~~-------------------edL~~~~~~l~~lGfkkl~W~~  454 (480)
                      .+.. ...++.++.|+|||||++++..+....                   ...+.+.++++..||+.+....
T Consensus       134 ~~~~-~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~  205 (266)
T 3ujc_A          134 SLEN-KNKLFQKCYKWLKPTGTLLITDYCATEKENWDDEFKEYVKQRKYTLITVEEYADILTACNFKNVVSKD  205 (266)
T ss_dssp             CHHH-HHHHHHHHHHHEEEEEEEEEEEEEESCGGGCCHHHHHHHHHHTCCCCCHHHHHHHHHHTTCEEEEEEE
T ss_pred             ChHH-HHHHHHHHHHHcCCCCEEEEEEeccCCcccchHHHHHHHhcCCCCCCCHHHHHHHHHHcCCeEEEEEe
Confidence            4322 367999999999999999997543222                   0134677899999998876543

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*

Probab=99.58  E-value=1.8e-14  Score=136.13  Aligned_cols=132  Identities=14%  Similarity=0.238  Sum_probs=97.8

Q ss_pred             HHHhcCCCCCCCCeEEEECCCCcHHHHHHhhCCCEEEEEecCCChhHHHH----HHHhC--CCCeeeecccCCCCCCCcc
Q 046488          315 IPEVLDIKPGEIRIGLDFSIGTGTFAARMREFNVTLVSAIINLGAPFNEM----IALRG--LVPLYITINQRVPFFDNTL  388 (480)
Q Consensus       315 I~~vL~l~~g~iR~VLDVGCGtG~fAa~Lae~gV~Vv~vd~d~~~~~~~~----iA~rg--lip~~~~~ae~LPFpd~SF  388 (480)
                      +-+.+++.++.  +|||+|||+|.++..+++.+..+++++++.  .+...    +...+  .+.+..++++.+|+++++|
T Consensus        13 ~~~~~~~~~~~--~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~--~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~f   88 (239)
T 1xxl_A           13 MIKTAECRAEH--RVLDIGAGAGHTALAFSPYVQECIGVDATK--EMVEVASSFAQEKGVENVRFQQGTAESLPFPDDSF   88 (239)
T ss_dssp             HHHHHTCCTTC--EEEEESCTTSHHHHHHGGGSSEEEEEESCH--HHHHHHHHHHHHHTCCSEEEEECBTTBCCSCTTCE
T ss_pred             HHHHhCcCCCC--EEEEEccCcCHHHHHHHHhCCEEEEEECCH--HHHHHHHHHHHHcCCCCeEEEecccccCCCCCCcE
Confidence            33556666654  899999999999999999888888888652  23222    22223  2445567788899999999


Q ss_pred             chheecccccCccChhcHHHHHHHHHhcccCCcEEEEeeccCCh----------------------hhHHHHHHHHHHcC
Q 046488          389 DLIHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDSFFCAK----------------------EDMNDYLEVFKMLK  446 (480)
Q Consensus       389 DlV~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~f~~~~----------------------edL~~~~~~l~~lG  446 (480)
                      |+|++..+++|+.+.   ..++.++.|+|||||++++..+....                      -..+.+.++++..|
T Consensus        89 D~v~~~~~l~~~~~~---~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aG  165 (239)
T 1xxl_A           89 DIITCRYAAHHFSDV---RKAVREVARVLKQDGRFLLVDHYAPEDPVLDEFVNHLNRLRDPSHVRESSLSEWQAMFSANQ  165 (239)
T ss_dssp             EEEEEESCGGGCSCH---HHHHHHHHHHEEEEEEEEEEEECBCSSHHHHHHHHHHHHHHCTTCCCCCBHHHHHHHHHHTT
T ss_pred             EEEEECCchhhccCH---HHHHHHHHHHcCCCcEEEEEEcCCCCChhHHHHHHHHHHhccccccCCCCHHHHHHHHHHCC
Confidence            999999999999876   46999999999999999986433211                      11345778889999


Q ss_pred             ceeeEEE
Q 046488          447 YKKHKWV  453 (480)
Q Consensus       447 fkkl~W~  453 (480)
                      |..+...
T Consensus       166 f~~~~~~  172 (239)
T 1xxl_A          166 LAYQDIQ  172 (239)
T ss_dssp             EEEEEEE
T ss_pred             CcEEEEE
Confidence            9866433

>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*

Probab=99.58  E-value=2.2e-14  Score=132.26  Aligned_cols=147  Identities=16%  Similarity=0.152  Sum_probs=95.7

Q ss_pred             CCeEEEECCCCcHHHHHHhhCCCEEEEEecCCChhHHHHHHHh----CCCCeeeecccCCCCCCCccchheecccccCcc
Q 046488          326 IRIGLDFSIGTGTFAARMREFNVTLVSAIINLGAPFNEMIALR----GLVPLYITINQRVPFFDNTLDLIHTTRFLDGWI  401 (480)
Q Consensus       326 iR~VLDVGCGtG~fAa~Lae~gV~Vv~vd~d~~~~~~~~iA~r----glip~~~~~ae~LPFpd~SFDlV~ss~vL~h~~  401 (480)
                      ..+|||+|||+|.++..+++.+..+++++++.  .+......+    +.+.+..++.+.++ ++++||+|++..+++|+.
T Consensus        52 ~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~--~~~~~a~~~~~~~~~~~~~~~d~~~~~-~~~~fD~v~~~~~l~~~~  128 (216)
T 3ofk_A           52 VSNGLEIGCAAGAFTEKLAPHCKRLTVIDVMP--RAIGRACQRTKRWSHISWAATDILQFS-TAELFDLIVVAEVLYYLE  128 (216)
T ss_dssp             EEEEEEECCTTSHHHHHHGGGEEEEEEEESCH--HHHHHHHHHTTTCSSEEEEECCTTTCC-CSCCEEEEEEESCGGGSS
T ss_pred             CCcEEEEcCCCCHHHHHHHHcCCEEEEEECCH--HHHHHHHHhcccCCCeEEEEcchhhCC-CCCCccEEEEccHHHhCC
Confidence            35899999999999999999887888888652  333322222    22445566777787 789999999999999998


Q ss_pred             ChhcHHHHHHHHHhcccCCcEEEEee--------ccCChhhHHHHHHHHHHcCceeeEEEEeeccCCCCcceeEEEEEEe
Q 046488          402 DFVLLDFILYDWDRVLRPGGLLWIDS--------FFCAKEDMNDYLEVFKMLKYKKHKWVVVPKRDKDDREVFFSAVLEK  473 (480)
Q Consensus       402 d~~~l~~~L~EI~RVLKPGG~fiI~~--------f~~~~edL~~~~~~l~~lGfkkl~W~~~~k~d~~~~E~~lsav~qK  473 (480)
                      ++..+..++.++.|+|||||++++..        |.. ....+.+..++.. ++..+.......  .-..+-++.++++|
T Consensus       129 ~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~e~~~~~~--~~~~~d~~l~~~~~  204 (216)
T 3ofk_A          129 DMTQMRTAIDNMVKMLAPGGHLVFGSARDATCRRWGH-VAGAETVITILTE-ALTEVERVQCQG--QSADEDCLLARFRN  204 (216)
T ss_dssp             SHHHHHHHHHHHHHTEEEEEEEEEEEECHHHHHHTTC-SCCHHHHHHHHHH-HSEEEEEEEEEC--SSTTCEEEEEEEEC
T ss_pred             CHHHHHHHHHHHHHHcCCCCEEEEEecCCCcchhhhh-hhhHHHHHHHHHh-hccceEEEeccC--CccccchhHHHHhC
Confidence            77655678999999999999999864        222 1112223334332 133322111111  11234567788999


Q ss_pred             CCCCCC
Q 046488          474 PPRPFR  479 (480)
Q Consensus       474 P~~~~~  479 (480)
                      |...+.
T Consensus       205 ~~~~~~  210 (216)
T 3ofk_A          205 PERSSI  210 (216)
T ss_dssp             CC----
T ss_pred             Cccccc
Confidence            987543

>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}

Probab=99.57  E-value=4.8e-14  Score=130.23  Aligned_cols=127  Identities=18%  Similarity=0.226  Sum_probs=96.7

Q ss_pred             CeEEEECCCCcHHHHHHhhCCCEEEEEecCCChhHHHHHHHh----CC-------CCeeeecccCCCCCCCccchheecc
Q 046488          327 RIGLDFSIGTGTFAARMREFNVTLVSAIINLGAPFNEMIALR----GL-------VPLYITINQRVPFFDNTLDLIHTTR  395 (480)
Q Consensus       327 R~VLDVGCGtG~fAa~Lae~gV~Vv~vd~d~~~~~~~~iA~r----gl-------ip~~~~~ae~LPFpd~SFDlV~ss~  395 (480)
                      .+|||+|||+|.++..+++.+..+++++++.  .+...+..+    +.       +.+..++...+|+++++||+|++..
T Consensus        32 ~~vLdiG~G~G~~~~~l~~~~~~v~~vD~s~--~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~  109 (235)
T 3sm3_A           32 DEILDIGCGSGKISLELASKGYSVTGIDINS--EAIRLAETAARSPGLNQKTGGKAEFKVENASSLSFHDSSFDFAVMQA  109 (235)
T ss_dssp             CEEEEETCTTSHHHHHHHHTTCEEEEEESCH--HHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSCCSCTTCEEEEEEES
T ss_pred             CeEEEECCCCCHHHHHHHhCCCeEEEEECCH--HHHHHHHHHHHhcCCccccCcceEEEEecccccCCCCCceeEEEEcc
Confidence            4899999999999999999998999988762  232222221    11       2344566788999999999999999


Q ss_pred             cccCccChhcHHHHHHHHHhcccCCcEEEEeeccCC--------------------------------------hhhHHH
Q 046488          396 FLDGWIDFVLLDFILYDWDRVLRPGGLLWIDSFFCA--------------------------------------KEDMND  437 (480)
Q Consensus       396 vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~f~~~--------------------------------------~edL~~  437 (480)
                      +++|+.+......++.++.|+|||||++++..+...                                      .-..+.
T Consensus       110 ~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (235)
T 3sm3_A          110 FLTSVPDPKERSRIIKEVFRVLKPGAYLYLVEFGQNWHLKLYRKRYLHDFPITKEEGSFLARDPETGETEFIAHHFTEKE  189 (235)
T ss_dssp             CGGGCCCHHHHHHHHHHHHHHEEEEEEEEEEEEBCCTTSHHHHHHHHHHHHHHCSTTEEEEECTTTCCEEEEEECBCHHH
T ss_pred             hhhcCCCHHHHHHHHHHHHHHcCCCeEEEEEECCcchhHHHHHHHhhhhccchhhhcceEecccccCCcceeeEeCCHHH
Confidence            999998775445799999999999999998743221                                      012456


Q ss_pred             HHHHHHHcCceeeEEEEe
Q 046488          438 YLEVFKMLKYKKHKWVVV  455 (480)
Q Consensus       438 ~~~~l~~lGfkkl~W~~~  455 (480)
                      +.+++++.||+.+.+...
T Consensus       190 l~~ll~~aGf~~~~~~~~  207 (235)
T 3sm3_A          190 LVFLLTDCRFEIDYFRVK  207 (235)
T ss_dssp             HHHHHHTTTEEEEEEEEE
T ss_pred             HHHHHHHcCCEEEEEEec
Confidence            888999999998876653

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}

Probab=99.56  E-value=1.4e-14  Score=132.15  Aligned_cols=121  Identities=20%  Similarity=0.285  Sum_probs=91.4

Q ss_pred             eEEEECCCCcHHHHHHhhC-CCEEEEEecCCChhHHH----HHHHhC---CCCeeeecccCCCCCCCccchheecccccC
Q 046488          328 IGLDFSIGTGTFAARMREF-NVTLVSAIINLGAPFNE----MIALRG---LVPLYITINQRVPFFDNTLDLIHTTRFLDG  399 (480)
Q Consensus       328 ~VLDVGCGtG~fAa~Lae~-gV~Vv~vd~d~~~~~~~----~iA~rg---lip~~~~~ae~LPFpd~SFDlV~ss~vL~h  399 (480)
                      +|||+|||+|.++..++++ +..+++++++.  .+..    .+...+   .+.+..++.+.+|+++++||+|++..+++|
T Consensus        46 ~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~--~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~l~~  123 (219)
T 3dlc_A           46 TCIDIGSGPGALSIALAKQSDFSIRALDFSK--HMNEIALKNIADANLNDRIQIVQGDVHNIPIEDNYADLIVSRGSVFF  123 (219)
T ss_dssp             EEEEETCTTSHHHHHHHHHSEEEEEEEESCH--HHHHHHHHHHHHTTCTTTEEEEECBTTBCSSCTTCEEEEEEESCGGG
T ss_pred             EEEEECCCCCHHHHHHHHcCCCeEEEEECCH--HHHHHHHHHHHhccccCceEEEEcCHHHCCCCcccccEEEECchHhh
Confidence            8999999999999999987 66788887652  2222    222222   244566778889999999999999999999


Q ss_pred             ccChhcHHHHHHHHHhcccCCcEEEEeeccCCh---------------------------hhHHHHHHHHHHcCceeeEE
Q 046488          400 WIDFVLLDFILYDWDRVLRPGGLLWIDSFFCAK---------------------------EDMNDYLEVFKMLKYKKHKW  452 (480)
Q Consensus       400 ~~d~~~l~~~L~EI~RVLKPGG~fiI~~f~~~~---------------------------edL~~~~~~l~~lGfkkl~W  452 (480)
                      +.+.   ..++.++.|+|||||++++...+...                           ...+.+.++++..||+.+..
T Consensus       124 ~~~~---~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~  200 (219)
T 3dlc_A          124 WEDV---ATAFREIYRILKSGGKTYIGGGFGNKELRDSISAEMIRKNPDWKEFNRKNISQENVERFQNVLDEIGISSYEI  200 (219)
T ss_dssp             CSCH---HHHHHHHHHHEEEEEEEEEEECCSSHHHHHHHHHHHHHHCTTHHHHHHHHSSHHHHHHHHHHHHHHTCSSEEE
T ss_pred             ccCH---HHHHHHHHHhCCCCCEEEEEeccCcHHHHHHHHHHHHHhHHHHHhhhhhccccCCHHHHHHHHHHcCCCeEEE
Confidence            8665   46999999999999999987433221                           11245778999999987765


Q ss_pred             E
Q 046488          453 V  453 (480)
Q Consensus       453 ~  453 (480)
                      .
T Consensus       201 ~  201 (219)
T 3dlc_A          201 I  201 (219)
T ss_dssp             E
T ss_pred             E
Confidence            4

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}

Probab=99.56  E-value=6.6e-14  Score=129.19  Aligned_cols=140  Identities=11%  Similarity=0.076  Sum_probs=100.1

Q ss_pred             CeEEEECCCCcHHHHHHhhCCCEEEEEecCCChhHHHHHHHhC--CCCeeeecccCCCCCCCccchheecccccCccChh
Q 046488          327 RIGLDFSIGTGTFAARMREFNVTLVSAIINLGAPFNEMIALRG--LVPLYITINQRVPFFDNTLDLIHTTRFLDGWIDFV  404 (480)
Q Consensus       327 R~VLDVGCGtG~fAa~Lae~gV~Vv~vd~d~~~~~~~~iA~rg--lip~~~~~ae~LPFpd~SFDlV~ss~vL~h~~d~~  404 (480)
                      .+|||+|||+|.++..+++++..+++++++.  .+......+-  .+.+..+++..+|++ ++||+|++..+++|+.++.
T Consensus        47 ~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~--~~~~~a~~~~~~~~~~~~~d~~~~~~~-~~fD~v~~~~~l~~~~~~~  123 (220)
T 3hnr_A           47 GNVLEFGVGTGNLTNKLLLAGRTVYGIEPSR--EMRMIAKEKLPKEFSITEGDFLSFEVP-TSIDTIVSTYAFHHLTDDE  123 (220)
T ss_dssp             SEEEEECCTTSHHHHHHHHTTCEEEEECSCH--HHHHHHHHHSCTTCCEESCCSSSCCCC-SCCSEEEEESCGGGSCHHH
T ss_pred             CeEEEeCCCCCHHHHHHHhCCCeEEEEeCCH--HHHHHHHHhCCCceEEEeCChhhcCCC-CCeEEEEECcchhcCChHH
Confidence            4899999999999999999998999888652  3333332221  456677778889988 9999999999999987664


Q ss_pred             cHHHHHHHHHhcccCCcEEEEeeccCCh-h---------------------------hHHHHHHHHHHcCceeeEEEEee
Q 046488          405 LLDFILYDWDRVLRPGGLLWIDSFFCAK-E---------------------------DMNDYLEVFKMLKYKKHKWVVVP  456 (480)
Q Consensus       405 ~l~~~L~EI~RVLKPGG~fiI~~f~~~~-e---------------------------dL~~~~~~l~~lGfkkl~W~~~~  456 (480)
                      . ..++.++.|+|||||++++....... .                           ..+.+.+++++.||+....... 
T Consensus       124 ~-~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~v~~~~~~-  201 (220)
T 3hnr_A          124 K-NVAIAKYSQLLNKGGKIVFADTIFADQDAYDKTVEAAKQRGFHQLANDLQTEYYTRIPVMQTIFENNGFHVTFTRLN-  201 (220)
T ss_dssp             H-HHHHHHHHHHSCTTCEEEEEEECBSSHHHHHHHHHHHHHTTCHHHHHHHHHSCCCBHHHHHHHHHHTTEEEEEEECS-
T ss_pred             H-HHHHHHHHHhcCCCCEEEEEeccccChHHHHHHHHHHHhCCCccchhhcchhhcCCHHHHHHHHHHCCCEEEEeecc-
Confidence            2 34899999999999999987422111 0                           1245778999999964433221 


Q ss_pred             ccCCCCcceeEEEEEEeCCCCC
Q 046488          457 KRDKDDREVFFSAVLEKPPRPF  478 (480)
Q Consensus       457 k~d~~~~E~~lsav~qKP~~~~  478 (480)
                             .....+..+||..++
T Consensus       202 -------~~~w~~~~~~~~~~~  216 (220)
T 3hnr_A          202 -------HFVWVMEATKQLEHH  216 (220)
T ss_dssp             -------SSEEEEEEEECSCCC
T ss_pred             -------ceEEEEeehhhhhhh
Confidence                   112244567776654

>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36

Probab=99.56  E-value=4e-15  Score=138.47  Aligned_cols=131  Identities=9%  Similarity=-0.079  Sum_probs=92.2

Q ss_pred             cCCCCCCCCeEEEECCCCcHHHHHHhhCCCEEEEEecCCChhHHHHHHHh------------------CCCCeeeecccC
Q 046488          319 LDIKPGEIRIGLDFSIGTGTFAARMREFNVTLVSAIINLGAPFNEMIALR------------------GLVPLYITINQR  380 (480)
Q Consensus       319 L~l~~g~iR~VLDVGCGtG~fAa~Lae~gV~Vv~vd~d~~~~~~~~iA~r------------------glip~~~~~ae~  380 (480)
                      +.+.++  .+|||+|||+|.++..|+++|..|+++|++.  .+...+.++                  ..+.+..+++..
T Consensus        18 l~~~~~--~~vLD~GCG~G~~~~~la~~g~~V~gvD~S~--~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~   93 (203)
T 1pjz_A           18 LNVVPG--ARVLVPLCGKSQDMSWLSGQGYHVVGAELSE--AAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFA   93 (203)
T ss_dssp             HCCCTT--CEEEETTTCCSHHHHHHHHHCCEEEEEEECH--HHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSS
T ss_pred             cccCCC--CEEEEeCCCCcHhHHHHHHCCCeEEEEeCCH--HHHHHHHHHccCCcccccccccccccCCccEEEECcccc
Confidence            344444  3899999999999999999999999988763  344333222                  134566777888


Q ss_pred             CCCCC-CccchheecccccCccChhcHHHHHHHHHhcccCCcEEEEe--eccCC---h----hhHHHHHHHHHHcCceee
Q 046488          381 VPFFD-NTLDLIHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWID--SFFCA---K----EDMNDYLEVFKMLKYKKH  450 (480)
Q Consensus       381 LPFpd-~SFDlV~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~--~f~~~---~----edL~~~~~~l~~lGfkkl  450 (480)
                      +|+++ ++||+|++..+++++.+.. ...++.|+.|+|||||++++.  .+...   .    -..+++.++++. ||+..
T Consensus        94 l~~~~~~~fD~v~~~~~l~~l~~~~-~~~~l~~~~r~LkpgG~~~l~~~~~~~~~~~~~~~~~~~~el~~~~~~-gf~i~  171 (203)
T 1pjz_A           94 LTARDIGHCAAFYDRAAMIALPADM-RERYVQHLEALMPQACSGLLITLEYDQALLEGPPFSVPQTWLHRVMSG-NWEVT  171 (203)
T ss_dssp             STHHHHHSEEEEEEESCGGGSCHHH-HHHHHHHHHHHSCSEEEEEEEEESSCSSSSSSCCCCCCHHHHHHTSCS-SEEEE
T ss_pred             CCcccCCCEEEEEECcchhhCCHHH-HHHHHHHHHHHcCCCcEEEEEEEecCccccCCCCCCCCHHHHHHHhcC-CcEEE
Confidence            99886 8999999988888876433 367999999999999984433  22110   0    123556677777 88766


Q ss_pred             EEEEe
Q 046488          451 KWVVV  455 (480)
Q Consensus       451 ~W~~~  455 (480)
                      .+...
T Consensus       172 ~~~~~  176 (203)
T 1pjz_A          172 KVGGQ  176 (203)
T ss_dssp             EEEES
T ss_pred             Eeccc
Confidence            65543

>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}

Probab=99.56  E-value=1.5e-14  Score=136.29  Aligned_cols=123  Identities=15%  Similarity=0.060  Sum_probs=93.9

Q ss_pred             CeEEEECCCCcHHHHHHhhCCCEEEEEecCCChhHHHHHHHhCCCCeeeecccCC--CCCCCccchheecccccCccChh
Q 046488          327 RIGLDFSIGTGTFAARMREFNVTLVSAIINLGAPFNEMIALRGLVPLYITINQRV--PFFDNTLDLIHTTRFLDGWIDFV  404 (480)
Q Consensus       327 R~VLDVGCGtG~fAa~Lae~gV~Vv~vd~d~~~~~~~~iA~rglip~~~~~ae~L--PFpd~SFDlV~ss~vL~h~~d~~  404 (480)
                      .+|||||||+|.++..+++.+..+++++++   +.+...+.+. +.+...+...+  |+++++||+|++..+++|+.++.
T Consensus        43 ~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s---~~~~~~a~~~-~~~~~~d~~~~~~~~~~~~fD~i~~~~~l~~~~~~~  118 (240)
T 3dli_A           43 RRVLDIGCGRGEFLELCKEEGIESIGVDIN---EDMIKFCEGK-FNVVKSDAIEYLKSLPDKYLDGVMISHFVEHLDPER  118 (240)
T ss_dssp             SCEEEETCTTTHHHHHHHHHTCCEEEECSC---HHHHHHHHTT-SEEECSCHHHHHHTSCTTCBSEEEEESCGGGSCGGG
T ss_pred             CeEEEEeCCCCHHHHHHHhCCCcEEEEECC---HHHHHHHHhh-cceeeccHHHHhhhcCCCCeeEEEECCchhhCCcHH
Confidence            479999999999999999988888888865   3444445554 55555555554  89999999999999999987543


Q ss_pred             cHHHHHHHHHhcccCCcEEEEeeccCCh----------------hhHHHHHHHHHHcCceeeEEEE
Q 046488          405 LLDFILYDWDRVLRPGGLLWIDSFFCAK----------------EDMNDYLEVFKMLKYKKHKWVV  454 (480)
Q Consensus       405 ~l~~~L~EI~RVLKPGG~fiI~~f~~~~----------------edL~~~~~~l~~lGfkkl~W~~  454 (480)
                       +..++.++.|+|||||++++.......                -..+.+..++++.||+.+....
T Consensus       119 -~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~~~~~~  183 (240)
T 3dli_A          119 -LFELLSLCYSKMKYSSYIVIESPNPTSLYSLINFYIDPTHKKPVHPETLKFILEYLGFRDVKIEF  183 (240)
T ss_dssp             -HHHHHHHHHHHBCTTCCEEEEEECTTSHHHHHHHTTSTTCCSCCCHHHHHHHHHHHTCEEEEEEE
T ss_pred             -HHHHHHHHHHHcCCCcEEEEEeCCcchhHHHHHHhcCccccccCCHHHHHHHHHHCCCeEEEEEE
Confidence             367999999999999999987432211                1135677899999999776544

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}

Probab=99.56  E-value=2.6e-14  Score=133.42  Aligned_cols=121  Identities=15%  Similarity=0.052  Sum_probs=94.2

Q ss_pred             CeEEEECCCCcHHHHHHhhCCCEEEEEecCCChhHHHHHHHhC----CCCeeeecccCCCCCCCccchheecccccCccC
Q 046488          327 RIGLDFSIGTGTFAARMREFNVTLVSAIINLGAPFNEMIALRG----LVPLYITINQRVPFFDNTLDLIHTTRFLDGWID  402 (480)
Q Consensus       327 R~VLDVGCGtG~fAa~Lae~gV~Vv~vd~d~~~~~~~~iA~rg----lip~~~~~ae~LPFpd~SFDlV~ss~vL~h~~d  402 (480)
                      .+|||+|||+|.++..+++++..+++++++   +.....+.+.    .+.+..++...+|+++++||+|++..+++|+.+
T Consensus        55 ~~vLDiG~G~G~~~~~l~~~~~~v~~vD~s---~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~  131 (242)
T 3l8d_A           55 AEVLDVGCGDGYGTYKLSRTGYKAVGVDIS---EVMIQKGKERGEGPDLSFIKGDLSSLPFENEQFEAIMAINSLEWTEE  131 (242)
T ss_dssp             CEEEEETCTTSHHHHHHHHTTCEEEEEESC---HHHHHHHHTTTCBTTEEEEECBTTBCSSCTTCEEEEEEESCTTSSSC
T ss_pred             CeEEEEcCCCCHHHHHHHHcCCeEEEEECC---HHHHHHHHhhcccCCceEEEcchhcCCCCCCCccEEEEcChHhhccC
Confidence            389999999999999999999999998876   3333344443    234556778889999999999999999999876


Q ss_pred             hhcHHHHHHHHHhcccCCcEEEEeeccCCh-------------------hhHHHHHHHHHHcCceeeEEE
Q 046488          403 FVLLDFILYDWDRVLRPGGLLWIDSFFCAK-------------------EDMNDYLEVFKMLKYKKHKWV  453 (480)
Q Consensus       403 ~~~l~~~L~EI~RVLKPGG~fiI~~f~~~~-------------------edL~~~~~~l~~lGfkkl~W~  453 (480)
                      .   ..++.++.|+|||||++++..+....                   -....+..+++..||+.+...
T Consensus       132 ~---~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~  198 (242)
T 3l8d_A          132 P---LRALNEIKRVLKSDGYACIAILGPTAKPRENSYPRLYGKDVVCNTMMPWEFEQLVKEQGFKVVDGI  198 (242)
T ss_dssp             H---HHHHHHHHHHEEEEEEEEEEEECTTCGGGGGGGGGGGTCCCSSCCCCHHHHHHHHHHTTEEEEEEE
T ss_pred             H---HHHHHHHHHHhCCCeEEEEEEcCCcchhhhhhhhhhccccccccCCCHHHHHHHHHHcCCEEEEee
Confidence            6   46999999999999999987432211                   112467889999999987644

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18

Probab=99.56  E-value=2.6e-14  Score=138.48  Aligned_cols=128  Identities=20%  Similarity=0.165  Sum_probs=96.1

Q ss_pred             CCCCCCCCeEEEECCCCcHHHHHHhhC-CCEEEEEecCCChhHHH----HHHHhCC---CCeeeecccCCCCCCCccchh
Q 046488          320 DIKPGEIRIGLDFSIGTGTFAARMREF-NVTLVSAIINLGAPFNE----MIALRGL---VPLYITINQRVPFFDNTLDLI  391 (480)
Q Consensus       320 ~l~~g~iR~VLDVGCGtG~fAa~Lae~-gV~Vv~vd~d~~~~~~~----~iA~rgl---ip~~~~~ae~LPFpd~SFDlV  391 (480)
                      .+.++  .+|||||||+|.++..+++. +..+++++++.  .+..    .....+.   +.+..++...+|+++++||+|
T Consensus        79 ~~~~~--~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~--~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v  154 (297)
T 2o57_A           79 VLQRQ--AKGLDLGAGYGGAARFLVRKFGVSIDCLNIAP--VQNKRNEEYNNQAGLADNITVKYGSFLEIPCEDNSYDFI  154 (297)
T ss_dssp             CCCTT--CEEEEETCTTSHHHHHHHHHHCCEEEEEESCH--HHHHHHHHHHHHHTCTTTEEEEECCTTSCSSCTTCEEEE
T ss_pred             CCCCC--CEEEEeCCCCCHHHHHHHHHhCCEEEEEeCCH--HHHHHHHHHHHhcCCCcceEEEEcCcccCCCCCCCEeEE
Confidence            45544  48999999999999999987 88888888752  2222    2222332   445667788899999999999


Q ss_pred             eecccccCccChhcHHHHHHHHHhcccCCcEEEEeeccCCh-------------------hhHHHHHHHHHHcCceeeEE
Q 046488          392 HTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDSFFCAK-------------------EDMNDYLEVFKMLKYKKHKW  452 (480)
Q Consensus       392 ~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~f~~~~-------------------edL~~~~~~l~~lGfkkl~W  452 (480)
                      ++..+++|+.+.   ..++.|+.|+|||||++++..+....                   .....+.++++..||+.+..
T Consensus       155 ~~~~~l~~~~~~---~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~  231 (297)
T 2o57_A          155 WSQDAFLHSPDK---LKVFQECARVLKPRGVMAITDPMKEDGIDKSSIQPILDRIKLHDMGSLGLYRSLAKECGLVTLRT  231 (297)
T ss_dssp             EEESCGGGCSCH---HHHHHHHHHHEEEEEEEEEEEEEECTTCCGGGGHHHHHHHTCSSCCCHHHHHHHHHHTTEEEEEE
T ss_pred             EecchhhhcCCH---HHHHHHHHHHcCCCeEEEEEEeccCCCCchHHHHHHHHHhcCCCCCCHHHHHHHHHHCCCeEEEE
Confidence            999999999875   57999999999999999987532211                   02345678899999987765


Q ss_pred             EE
Q 046488          453 VV  454 (480)
Q Consensus       453 ~~  454 (480)
                      ..
T Consensus       232 ~~  233 (297)
T 2o57_A          232 FS  233 (297)
T ss_dssp             EE
T ss_pred             EE
Confidence            43

>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A

Probab=99.56  E-value=5.9e-14  Score=129.95  Aligned_cols=145  Identities=10%  Similarity=0.003  Sum_probs=100.0

Q ss_pred             CeEEEECCCCcHHHHHHhhCC--CEEEEEecCCChhHHHHHHHhC------------CCCeeeecccCCCCCCCccchhe
Q 046488          327 RIGLDFSIGTGTFAARMREFN--VTLVSAIINLGAPFNEMIALRG------------LVPLYITINQRVPFFDNTLDLIH  392 (480)
Q Consensus       327 R~VLDVGCGtG~fAa~Lae~g--V~Vv~vd~d~~~~~~~~iA~rg------------lip~~~~~ae~LPFpd~SFDlV~  392 (480)
                      .+|||+|||+|.++..+++++  ..+++++++.  .+.. .+.+.            .+.+..++...+++++++||+|+
T Consensus        31 ~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~--~~~~-~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~  107 (219)
T 3jwg_A           31 KKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSY--SVLE-RAKDRLKIDRLPEMQRKRISLFQSSLVYRDKRFSGYDAAT  107 (219)
T ss_dssp             CEEEEETCTTCHHHHHHHTSTTCCEEEEEESCH--HHHH-HHHHHHTGGGSCHHHHTTEEEEECCSSSCCGGGTTCSEEE
T ss_pred             CEEEEecCCCCHHHHHHHhcCCCCEEEEEECCH--HHHH-HHHHHHHhhccccccCcceEEEeCcccccccccCCCCEEE
Confidence            489999999999999999875  6888888762  2322 22221            34556666778888899999999


Q ss_pred             ecccccCccChhcHHHHHHHHHhcccCCcEEEEeeccC----------------------ChhhHHH-HHHHHHHcCcee
Q 046488          393 TTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDSFFC----------------------AKEDMND-YLEVFKMLKYKK  449 (480)
Q Consensus       393 ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~f~~----------------------~~edL~~-~~~~l~~lGfkk  449 (480)
                      +..+++|+.++. +..++.++.|+|||||++++.....                      ..+++.. +..++++.||+.
T Consensus       108 ~~~~l~~~~~~~-~~~~l~~~~~~LkpgG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~Gf~v  186 (219)
T 3jwg_A          108 VIEVIEHLDENR-LQAFEKVLFEFTRPQTVIVSTPNKEYNFHYGNLFEGNLRHRDHRFEWTRKEFQTWAVKVAEKYGYSV  186 (219)
T ss_dssp             EESCGGGCCHHH-HHHHHHHHHTTTCCSEEEEEEEBGGGGGCCCCT-----GGGCCTTSBCHHHHHHHHHHHHHHHTEEE
T ss_pred             EHHHHHhCCHHH-HHHHHHHHHHhhCCCEEEEEccchhhhhhhcccCcccccccCceeeecHHHHHHHHHHHHHHCCcEE
Confidence            999999986553 3579999999999999776652110                      1223332 337888889965


Q ss_pred             eEEEEeeccCCCCcceeEEEEEEeCCC
Q 046488          450 HKWVVVPKRDKDDREVFFSAVLEKPPR  476 (480)
Q Consensus       450 l~W~~~~k~d~~~~E~~lsav~qKP~~  476 (480)
                      ..-.++.. +...+.....||+.|-..
T Consensus       187 ~~~~~g~~-~~~~g~~~qi~~~~~~~~  212 (219)
T 3jwg_A          187 RFLQIGEI-DDEFGSPTQMGVFTLGAG  212 (219)
T ss_dssp             EEEEESCC-CTTSCCSEEEEEEEECC-
T ss_pred             EEEecCCc-cccCCCCeEEEEEeccCC
Confidence            44333332 223445567888988653

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}

Probab=99.55  E-value=2.1e-14  Score=135.77  Aligned_cols=96  Identities=13%  Similarity=0.073  Sum_probs=77.5

Q ss_pred             CCeEEEECCCCcHHHHHHhhCCC-EEEEEecCCChhHHHHHHHh---CCCCeeeecccCCCCCCCccchheecccccCcc
Q 046488          326 IRIGLDFSIGTGTFAARMREFNV-TLVSAIINLGAPFNEMIALR---GLVPLYITINQRVPFFDNTLDLIHTTRFLDGWI  401 (480)
Q Consensus       326 iR~VLDVGCGtG~fAa~Lae~gV-~Vv~vd~d~~~~~~~~iA~r---glip~~~~~ae~LPFpd~SFDlV~ss~vL~h~~  401 (480)
                      ..+|||+|||+|.++..+++.+. .+++++++.  .+...+..+   ..+.+..++++.+|+++++||+|++..+++|+.
T Consensus        45 ~~~vLD~GcG~G~~~~~l~~~~~~~v~~vD~s~--~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~  122 (253)
T 3g5l_A           45 QKTVLDLGCGFGWHCIYAAEHGAKKVLGIDLSE--RMLTEAKRKTTSPVVCYEQKAIEDIAIEPDAYNVVLSSLALHYIA  122 (253)
T ss_dssp             TCEEEEETCTTCHHHHHHHHTTCSEEEEEESCH--HHHHHHHHHCCCTTEEEEECCGGGCCCCTTCEEEEEEESCGGGCS
T ss_pred             CCEEEEECCCCCHHHHHHHHcCCCEEEEEECCH--HHHHHHHHhhccCCeEEEEcchhhCCCCCCCeEEEEEchhhhhhh
Confidence            35899999999999999999887 888888652  333333332   134456677888999999999999999999986


Q ss_pred             ChhcHHHHHHHHHhcccCCcEEEEe
Q 046488          402 DFVLLDFILYDWDRVLRPGGLLWID  426 (480)
Q Consensus       402 d~~~l~~~L~EI~RVLKPGG~fiI~  426 (480)
                      +.   ..++.++.|+|||||++++.
T Consensus       123 ~~---~~~l~~~~~~LkpgG~l~~~  144 (253)
T 3g5l_A          123 SF---DDICKKVYINLKSSGSFIFS  144 (253)
T ss_dssp             CH---HHHHHHHHHHEEEEEEEEEE
T ss_pred             hH---HHHHHHHHHHcCCCcEEEEE
Confidence            65   57999999999999999986

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}

Probab=99.55  E-value=4.8e-14  Score=134.55  Aligned_cols=131  Identities=25%  Similarity=0.336  Sum_probs=96.9

Q ss_pred             hcCCCCCCCCeEEEECCCCcHHHHHHhhC-CCEEEEEecCCChhHHH----HHHHhCC---CCeeeecccCCCCCCCccc
Q 046488          318 VLDIKPGEIRIGLDFSIGTGTFAARMREF-NVTLVSAIINLGAPFNE----MIALRGL---VPLYITINQRVPFFDNTLD  389 (480)
Q Consensus       318 vL~l~~g~iR~VLDVGCGtG~fAa~Lae~-gV~Vv~vd~d~~~~~~~----~iA~rgl---ip~~~~~ae~LPFpd~SFD  389 (480)
                      .+++.++  .+|||||||+|.++..++++ +..+++++++.  .+..    .+...+.   +.+..++.+.+|+++++||
T Consensus        56 ~~~~~~~--~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~--~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD  131 (273)
T 3bus_A           56 LLDVRSG--DRVLDVGCGIGKPAVRLATARDVRVTGISISR--PQVNQANARATAAGLANRVTFSYADAMDLPFEDASFD  131 (273)
T ss_dssp             HSCCCTT--CEEEEESCTTSHHHHHHHHHSCCEEEEEESCH--HHHHHHHHHHHHTTCTTTEEEEECCTTSCCSCTTCEE
T ss_pred             hcCCCCC--CEEEEeCCCCCHHHHHHHHhcCCEEEEEeCCH--HHHHHHHHHHHhcCCCcceEEEECccccCCCCCCCcc
Confidence            3445444  48999999999999999874 78888888753  2222    2222232   4455677888999999999


Q ss_pred             hheecccccCccChhcHHHHHHHHHhcccCCcEEEEeeccCCh----------------------hhHHHHHHHHHHcCc
Q 046488          390 LIHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDSFFCAK----------------------EDMNDYLEVFKMLKY  447 (480)
Q Consensus       390 lV~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~f~~~~----------------------edL~~~~~~l~~lGf  447 (480)
                      +|++..+++|+.+.   ..++.++.|+|||||++++..+....                      ...+.+..++++.||
T Consensus       132 ~v~~~~~l~~~~~~---~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf  208 (273)
T 3bus_A          132 AVWALESLHHMPDR---GRALREMARVLRPGGTVAIADFVLLAPVEGAKKEAVDAFRAGGGVLSLGGIDEYESDVRQAEL  208 (273)
T ss_dssp             EEEEESCTTTSSCH---HHHHHHHHTTEEEEEEEEEEEEEESSCCCHHHHHHHHHHHHHHTCCCCCCHHHHHHHHHHTTC
T ss_pred             EEEEechhhhCCCH---HHHHHHHHHHcCCCeEEEEEEeeccCCCChhHHHHHHHHHhhcCccCCCCHHHHHHHHHHcCC
Confidence            99999999998776   46999999999999999987533210                      012457788999999


Q ss_pred             eeeEEEEe
Q 046488          448 KKHKWVVV  455 (480)
Q Consensus       448 kkl~W~~~  455 (480)
                      +.+.+...
T Consensus       209 ~~~~~~~~  216 (273)
T 3bus_A          209 VVTSTVDI  216 (273)
T ss_dssp             EEEEEEEC
T ss_pred             eEEEEEEC
Confidence            98776553

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21

Probab=99.54  E-value=2.7e-14  Score=134.74  Aligned_cols=128  Identities=18%  Similarity=0.146  Sum_probs=93.6

Q ss_pred             HhcCCCCCCCCeEEEECCCCcHHHHHHhhC-CCEEEEEecCCChhHHH----HHHHhCC---CCeeeecccCCCCCCCcc
Q 046488          317 EVLDIKPGEIRIGLDFSIGTGTFAARMREF-NVTLVSAIINLGAPFNE----MIALRGL---VPLYITINQRVPFFDNTL  388 (480)
Q Consensus       317 ~vL~l~~g~iR~VLDVGCGtG~fAa~Lae~-gV~Vv~vd~d~~~~~~~----~iA~rgl---ip~~~~~ae~LPFpd~SF  388 (480)
                      +.+.+.++  .+|||||||+|.++..+++. +..+++++++.  .+..    .++..+.   +.+..++++.+|+ +++|
T Consensus        30 ~~~~~~~~--~~VLDiGcG~G~~~~~la~~~~~~v~gvD~s~--~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~-~~~f  104 (256)
T 1nkv_A           30 RVLRMKPG--TRILDLGSGSGEMLCTWARDHGITGTGIDMSS--LFTAQAKRRAEELGVSERVHFIHNDAAGYVA-NEKC  104 (256)
T ss_dssp             HHTCCCTT--CEEEEETCTTCHHHHHHHHHTCCEEEEEESCH--HHHHHHHHHHHHTTCTTTEEEEESCCTTCCC-SSCE
T ss_pred             HhcCCCCC--CEEEEECCCCCHHHHHHHHhcCCeEEEEeCCH--HHHHHHHHHHHhcCCCcceEEEECChHhCCc-CCCC
Confidence            44555555  38999999999999999876 77888888652  3322    2222332   4455677888888 8999


Q ss_pred             chheecccccCccChhcHHHHHHHHHhcccCCcEEEEee--ccCCh-----------------hhHHHHHHHHHHcCcee
Q 046488          389 DLIHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDS--FFCAK-----------------EDMNDYLEVFKMLKYKK  449 (480)
Q Consensus       389 DlV~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~--f~~~~-----------------edL~~~~~~l~~lGfkk  449 (480)
                      |+|++..+++|+.+.   ..+|.|+.|+|||||++++..  +....                 .....+..+++..||+.
T Consensus       105 D~V~~~~~~~~~~~~---~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~  181 (256)
T 1nkv_A          105 DVAACVGATWIAGGF---AGAEELLAQSLKPGGIMLIGEPYWRQLPATEEIAQACGVSSTSDFLTLPGLVGAFDDLGYDV  181 (256)
T ss_dssp             EEEEEESCGGGTSSS---HHHHHHHTTSEEEEEEEEEEEEEETTCCSSHHHHHTTTCSCGGGSCCHHHHHHHHHTTTBCC
T ss_pred             CEEEECCChHhcCCH---HHHHHHHHHHcCCCeEEEEecCcccCCCChHHHHHHHhcccccccCCHHHHHHHHHHCCCee
Confidence            999999999888765   469999999999999999864  21110                 01356788999999987


Q ss_pred             eEE
Q 046488          450 HKW  452 (480)
Q Consensus       450 l~W  452 (480)
                      +..
T Consensus       182 ~~~  184 (256)
T 1nkv_A          182 VEM  184 (256)
T ss_dssp             CEE
T ss_pred             EEE
Confidence            653

>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*

Probab=99.54  E-value=4.6e-14  Score=137.77  Aligned_cols=100  Identities=15%  Similarity=0.108  Sum_probs=74.5

Q ss_pred             CCCCCCCeEEEECCCCcHHHHHHhhC----CCEEEEEecCCChhHHHHHH----HhCC---CCeeeecccCCCCCCCccc
Q 046488          321 IKPGEIRIGLDFSIGTGTFAARMREF----NVTLVSAIINLGAPFNEMIA----LRGL---VPLYITINQRVPFFDNTLD  389 (480)
Q Consensus       321 l~~g~iR~VLDVGCGtG~fAa~Lae~----gV~Vv~vd~d~~~~~~~~iA----~rgl---ip~~~~~ae~LPFpd~SFD  389 (480)
                      ++++.  +|||+|||||.++..|+++    |+.++++|++  ..+.+.+.    ..+.   +.+..+++..+|++  .||
T Consensus        68 ~~~~~--~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s--~~ml~~A~~~~~~~~~~~~v~~~~~D~~~~~~~--~~d  141 (261)
T 4gek_A           68 VQPGT--QVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNS--PAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIE--NAS  141 (261)
T ss_dssp             CCTTC--EEEEETCTTTHHHHHHHHTCCSSSCEEEEEESC--HHHHHHHHHHHHTSCCSSCEEEEESCTTTCCCC--SEE
T ss_pred             CCCCC--EEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECC--HHHHHHHHHHHHhhccCceEEEeeccccccccc--ccc
Confidence            45554  8999999999999999875    6788888865  23333221    1222   33455677788874  599


Q ss_pred             hheecccccCccChhcHHHHHHHHHhcccCCcEEEEee
Q 046488          390 LIHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDS  427 (480)
Q Consensus       390 lV~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~  427 (480)
                      +|++..+++|+.+.+ ...+|.|++|+|||||+|++.+
T Consensus       142 ~v~~~~~l~~~~~~~-~~~~l~~i~~~LkpGG~lii~e  178 (261)
T 4gek_A          142 MVVLNFTLQFLEPSE-RQALLDKIYQGLNPGGALVLSE  178 (261)
T ss_dssp             EEEEESCGGGSCHHH-HHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cceeeeeeeecCchh-HhHHHHHHHHHcCCCcEEEEEe
Confidence            999999998876543 3679999999999999999874

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}

Probab=99.54  E-value=6.6e-14  Score=128.37  Aligned_cols=122  Identities=16%  Similarity=0.151  Sum_probs=90.3

Q ss_pred             CeEEEECCCCcHHHHHHhhCCCEEEEEecCCChhHHHHHHHhCCCCeeeecccCC---CCCCCc-cchheecccccCccC
Q 046488          327 RIGLDFSIGTGTFAARMREFNVTLVSAIINLGAPFNEMIALRGLVPLYITINQRV---PFFDNT-LDLIHTTRFLDGWID  402 (480)
Q Consensus       327 R~VLDVGCGtG~fAa~Lae~gV~Vv~vd~d~~~~~~~~iA~rglip~~~~~ae~L---PFpd~S-FDlV~ss~vL~h~~d  402 (480)
                      .+|||+|||+|.++..+++++..+++++++  ..+......+..+.........+   |+.++. ||+|++..+++ +.+
T Consensus        54 ~~vLdiG~G~G~~~~~l~~~~~~v~~vD~s--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~~~l~-~~~  130 (227)
T 3e8s_A           54 ERVLDLGCGEGWLLRALADRGIEAVGVDGD--RTLVDAARAAGAGEVHLASYAQLAEAKVPVGKDYDLICANFALL-HQD  130 (227)
T ss_dssp             SEEEEETCTTCHHHHHHHTTTCEEEEEESC--HHHHHHHHHTCSSCEEECCHHHHHTTCSCCCCCEEEEEEESCCC-SSC
T ss_pred             CEEEEeCCCCCHHHHHHHHCCCEEEEEcCC--HHHHHHHHHhcccccchhhHHhhcccccccCCCccEEEECchhh-hhh
Confidence            589999999999999999999899998875  23444444444455555554444   665554 99999999988 544


Q ss_pred             hhcHHHHHHHHHhcccCCcEEEEeeccCC-------------------h----------hhHHHHHHHHHHcCceeeEEE
Q 046488          403 FVLLDFILYDWDRVLRPGGLLWIDSFFCA-------------------K----------EDMNDYLEVFKMLKYKKHKWV  453 (480)
Q Consensus       403 ~~~l~~~L~EI~RVLKPGG~fiI~~f~~~-------------------~----------edL~~~~~~l~~lGfkkl~W~  453 (480)
                      .   ..++.++.|+|||||++++..+...                   .          ...+.+.++++..||+.+...
T Consensus       131 ~---~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~  207 (227)
T 3e8s_A          131 I---IELLSAMRTLLVPGGALVIQTLHPWSVADGDYQDGWREESFAGFAGDWQPMPWYFRTLASWLNALDMAGLRLVSLQ  207 (227)
T ss_dssp             C---HHHHHHHHHTEEEEEEEEEEECCTTTTCTTCCSCEEEEECCTTSSSCCCCEEEEECCHHHHHHHHHHTTEEEEEEE
T ss_pred             H---HHHHHHHHHHhCCCeEEEEEecCccccCccccccccchhhhhccccCcccceEEEecHHHHHHHHHHcCCeEEEEe
Confidence            4   5699999999999999998743110                   0          135678899999999988765


Q ss_pred             E
Q 046488          454 V  454 (480)
Q Consensus       454 ~  454 (480)
                      .
T Consensus       208 ~  208 (227)
T 3e8s_A          208 E  208 (227)
T ss_dssp             C
T ss_pred             c
Confidence            4

>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*

Probab=99.54  E-value=4.7e-14  Score=127.40  Aligned_cols=107  Identities=16%  Similarity=0.129  Sum_probs=79.6

Q ss_pred             HHHhcCCCCCCCCeEEEECCCCcHHHHHHhhCCCEEEEEecCCChhHHH----HHHHhC--CCCeeeecccCCCCCCCcc
Q 046488          315 IPEVLDIKPGEIRIGLDFSIGTGTFAARMREFNVTLVSAIINLGAPFNE----MIALRG--LVPLYITINQRVPFFDNTL  388 (480)
Q Consensus       315 I~~vL~l~~g~iR~VLDVGCGtG~fAa~Lae~gV~Vv~vd~d~~~~~~~----~iA~rg--lip~~~~~ae~LPFpd~SF  388 (480)
                      +.+.++..++  .+|||+|||+|.++..+++.+..+++++++.  .+..    .+...+  .+.+..++...+|+ +++|
T Consensus        24 l~~~~~~~~~--~~vLdiG~G~G~~~~~l~~~~~~v~~vD~s~--~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~-~~~~   98 (199)
T 2xvm_A           24 VLEAVKVVKP--GKTLDLGCGNGRNSLYLAANGYDVDAWDKNA--MSIANVERIKSIENLDNLHTRVVDLNNLTF-DRQY   98 (199)
T ss_dssp             HHHHTTTSCS--CEEEEETCTTSHHHHHHHHTTCEEEEEESCH--HHHHHHHHHHHHHTCTTEEEEECCGGGCCC-CCCE
T ss_pred             HHHHhhccCC--CeEEEEcCCCCHHHHHHHHCCCeEEEEECCH--HHHHHHHHHHHhCCCCCcEEEEcchhhCCC-CCCc
Confidence            3345554444  3899999999999999999988898888753  2222    222233  24455566777888 8999


Q ss_pred             chheecccccCccChhcHHHHHHHHHhcccCCcEEEEee
Q 046488          389 DLIHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDS  427 (480)
Q Consensus       389 DlV~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~  427 (480)
                      |+|++..+++|+.+. ....++.++.|+|||||++++..
T Consensus        99 D~v~~~~~l~~~~~~-~~~~~l~~~~~~L~~gG~l~~~~  136 (199)
T 2xvm_A           99 DFILSTVVLMFLEAK-TIPGLIANMQRCTKPGGYNLIVA  136 (199)
T ss_dssp             EEEEEESCGGGSCGG-GHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             eEEEEcchhhhCCHH-HHHHHHHHHHHhcCCCeEEEEEE
Confidence            999999999887633 23679999999999999988764

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}

Probab=99.54  E-value=3.2e-14  Score=126.48  Aligned_cols=123  Identities=19%  Similarity=0.221  Sum_probs=88.9

Q ss_pred             cCCCCCCCCeEEEECCCCcHHHHHHhhCCCEEEEEecCCChhHHHHHHHh-CCCCeeeecccCCCCCCCccchheecccc
Q 046488          319 LDIKPGEIRIGLDFSIGTGTFAARMREFNVTLVSAIINLGAPFNEMIALR-GLVPLYITINQRVPFFDNTLDLIHTTRFL  397 (480)
Q Consensus       319 L~l~~g~iR~VLDVGCGtG~fAa~Lae~gV~Vv~vd~d~~~~~~~~iA~r-glip~~~~~ae~LPFpd~SFDlV~ss~vL  397 (480)
                      +++.++  .+|||+|||+|.++..+++.+..+++++++  ..+......+ ..+.+..++   +|+++++||+|++..++
T Consensus        13 ~~~~~~--~~vLDiG~G~G~~~~~l~~~~~~v~~vD~s--~~~~~~a~~~~~~v~~~~~d---~~~~~~~~D~v~~~~~l   85 (170)
T 3i9f_A           13 IFEGKK--GVIVDYGCGNGFYCKYLLEFATKLYCIDIN--VIALKEVKEKFDSVITLSDP---KEIPDNSVDFILFANSF   85 (170)
T ss_dssp             HHSSCC--EEEEEETCTTCTTHHHHHTTEEEEEEECSC--HHHHHHHHHHCTTSEEESSG---GGSCTTCEEEEEEESCS
T ss_pred             cCcCCC--CeEEEECCCCCHHHHHHHhhcCeEEEEeCC--HHHHHHHHHhCCCcEEEeCC---CCCCCCceEEEEEccch
Confidence            344444  489999999999999999986577777765  2333333332 223333333   88999999999999999


Q ss_pred             cCccChhcHHHHHHHHHhcccCCcEEEEeeccCChh----------hHHHHHHHHHHcCceeeEEE
Q 046488          398 DGWIDFVLLDFILYDWDRVLRPGGLLWIDSFFCAKE----------DMNDYLEVFKMLKYKKHKWV  453 (480)
Q Consensus       398 ~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~f~~~~e----------dL~~~~~~l~~lGfkkl~W~  453 (480)
                      +|+.+.   ..++.++.|+|||||++++..+.....          ..+.+.++++  ||+.+...
T Consensus        86 ~~~~~~---~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--Gf~~~~~~  146 (170)
T 3i9f_A           86 HDMDDK---QHVISEVKRILKDDGRVIIIDWRKENTGIGPPLSIRMDEKDYMGWFS--NFVVEKRF  146 (170)
T ss_dssp             TTCSCH---HHHHHHHHHHEEEEEEEEEEEECSSCCSSSSCGGGCCCHHHHHHHTT--TEEEEEEE
T ss_pred             hcccCH---HHHHHHHHHhcCCCCEEEEEEcCccccccCchHhhhcCHHHHHHHHh--CcEEEEcc
Confidence            998765   569999999999999999986544321          1345667776  88876543

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*

Probab=99.53  E-value=6e-14  Score=128.44  Aligned_cols=128  Identities=15%  Similarity=0.029  Sum_probs=95.2

Q ss_pred             CCCCCCCeEEEECCCCcHHHHHHhhCCCEEEEEecCCChhHHHHHHHh-CC--CCeeeecccCCCCCCCccchheecccc
Q 046488          321 IKPGEIRIGLDFSIGTGTFAARMREFNVTLVSAIINLGAPFNEMIALR-GL--VPLYITINQRVPFFDNTLDLIHTTRFL  397 (480)
Q Consensus       321 l~~g~iR~VLDVGCGtG~fAa~Lae~gV~Vv~vd~d~~~~~~~~iA~r-gl--ip~~~~~ae~LPFpd~SFDlV~ss~vL  397 (480)
                      +.++.  +|||+|||+|.++..+++.+..+++++++   +.....+.+ +.  +.+..++...+ +++++||+|++..++
T Consensus        44 ~~~~~--~vLdiG~G~G~~~~~l~~~~~~v~~~D~s---~~~~~~a~~~~~~~~~~~~~d~~~~-~~~~~~D~v~~~~~l  117 (218)
T 3ou2_A           44 GNIRG--DVLELASGTGYWTRHLSGLADRVTALDGS---AEMIAEAGRHGLDNVEFRQQDLFDW-TPDRQWDAVFFAHWL  117 (218)
T ss_dssp             TTSCS--EEEEESCTTSHHHHHHHHHSSEEEEEESC---HHHHHHHGGGCCTTEEEEECCTTSC-CCSSCEEEEEEESCG
T ss_pred             CCCCC--eEEEECCCCCHHHHHHHhcCCeEEEEeCC---HHHHHHHHhcCCCCeEEEecccccC-CCCCceeEEEEechh
Confidence            54443  89999999999999999988899998875   233333333 31  33455666677 889999999999999


Q ss_pred             cCccChhcHHHHHHHHHhcccCCcEEEEeeccCCh-------------------------------hhHHHHHHHHHHcC
Q 046488          398 DGWIDFVLLDFILYDWDRVLRPGGLLWIDSFFCAK-------------------------------EDMNDYLEVFKMLK  446 (480)
Q Consensus       398 ~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~f~~~~-------------------------------edL~~~~~~l~~lG  446 (480)
                      +|+.++. +..++.++.|+|||||++++..+....                               ...+.+.++++..|
T Consensus       118 ~~~~~~~-~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG  196 (218)
T 3ou2_A          118 AHVPDDR-FEAFWESVRSAVAPGGVVEFVDVTDHERRLEQQDDSEPEVAVRRTLQDGRSFRIVKVFRSPAELTERLTALG  196 (218)
T ss_dssp             GGSCHHH-HHHHHHHHHHHEEEEEEEEEEEECCCC------------CEEEEECTTSCEEEEECCCCCHHHHHHHHHHTT
T ss_pred             hcCCHHH-HHHHHHHHHHHcCCCeEEEEEeCCCCccccchhhhcccccceeeecCCcchhhHhhcCCCHHHHHHHHHHCC
Confidence            9987642 367999999999999999987432210                               12356788999999


Q ss_pred             ceeeEEEEe
Q 046488          447 YKKHKWVVV  455 (480)
Q Consensus       447 fkkl~W~~~  455 (480)
                      |+...|...
T Consensus       197 f~v~~~~~~  205 (218)
T 3ou2_A          197 WSCSVDEVH  205 (218)
T ss_dssp             EEEEEEEEE
T ss_pred             CEEEeeecc
Confidence            996666653

>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42

Probab=99.53  E-value=8e-14  Score=131.38  Aligned_cols=140  Identities=16%  Similarity=0.082  Sum_probs=98.7

Q ss_pred             hhHHHhcCCCC--CCCCeEEEECCCCcHHHHHHhhCC-CEEEEEecCCChhHHHHHHHhCC-------CCeeeecccCCC
Q 046488          313 FLIPEVLDIKP--GEIRIGLDFSIGTGTFAARMREFN-VTLVSAIINLGAPFNEMIALRGL-------VPLYITINQRVP  382 (480)
Q Consensus       313 ~~I~~vL~l~~--g~iR~VLDVGCGtG~fAa~Lae~g-V~Vv~vd~d~~~~~~~~iA~rgl-------ip~~~~~ae~LP  382 (480)
                      .++..++....  ....+|||||||+|.++..|++++ ..+++++++.  .+.. .+.+..       +.+..++...++
T Consensus        65 ~~~~~l~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~--~~~~-~a~~~~~~~~~~~~~~~~~d~~~~~  141 (241)
T 2ex4_A           65 KFLQRFLREGPNKTGTSCALDCGAGIGRITKRLLLPLFREVDMVDITE--DFLV-QAKTYLGEEGKRVRNYFCCGLQDFT  141 (241)
T ss_dssp             HHHHGGGC----CCCCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCH--HHHH-HHHHHTGGGGGGEEEEEECCGGGCC
T ss_pred             HHHHHHHHhcccCCCCCEEEEECCCCCHHHHHHHHhcCCEEEEEeCCH--HHHH-HHHHHhhhcCCceEEEEEcChhhcC
Confidence            34555554321  124589999999999999998874 4788887652  3333 222221       334556678889


Q ss_pred             CCCCccchheecccccCccChhcHHHHHHHHHhcccCCcEEEEeeccCCh------------hhHHHHHHHHHHcCceee
Q 046488          383 FFDNTLDLIHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDSFFCAK------------EDMNDYLEVFKMLKYKKH  450 (480)
Q Consensus       383 Fpd~SFDlV~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~f~~~~------------edL~~~~~~l~~lGfkkl  450 (480)
                      +++++||+|++..+++|+.++. +..++.++.|+|||||++++..+....            ...+.+.++++..||+.+
T Consensus       142 ~~~~~fD~v~~~~~l~~~~~~~-~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~  220 (241)
T 2ex4_A          142 PEPDSYDVIWIQWVIGHLTDQH-LAEFLRRCKGSLRPNGIIVIKDNMAQEGVILDDVDSSVCRDLDVVRRIICSAGLSLL  220 (241)
T ss_dssp             CCSSCEEEEEEESCGGGSCHHH-HHHHHHHHHHHEEEEEEEEEEEEEBSSSEEEETTTTEEEEBHHHHHHHHHHTTCCEE
T ss_pred             CCCCCEEEEEEcchhhhCCHHH-HHHHHHHHHHhcCCCeEEEEEEccCCCcceecccCCcccCCHHHHHHHHHHcCCeEE
Confidence            9999999999999999887643 357999999999999999996532211            135678889999999988


Q ss_pred             EEEEee
Q 046488          451 KWVVVP  456 (480)
Q Consensus       451 ~W~~~~  456 (480)
                      .+....
T Consensus       221 ~~~~~~  226 (241)
T 2ex4_A          221 AEERQE  226 (241)
T ss_dssp             EEEECC
T ss_pred             EeeecC
Confidence            766543

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}

Probab=99.53  E-value=6.6e-14  Score=130.51  Aligned_cols=132  Identities=13%  Similarity=0.070  Sum_probs=98.5

Q ss_pred             HHHhcCCCCCCCCeEEEECCCCcHHHHHHhhCCC-EEEEEecCCChhHHHHHHHhCC----CCeeeecccCCCCCCCccc
Q 046488          315 IPEVLDIKPGEIRIGLDFSIGTGTFAARMREFNV-TLVSAIINLGAPFNEMIALRGL----VPLYITINQRVPFFDNTLD  389 (480)
Q Consensus       315 I~~vL~l~~g~iR~VLDVGCGtG~fAa~Lae~gV-~Vv~vd~d~~~~~~~~iA~rgl----ip~~~~~ae~LPFpd~SFD  389 (480)
                      +...++..++  .+|||+|||+|.++..+++++. .+++++++   +.....+.+..    +.+..++...+|+++++||
T Consensus        35 l~~~~~~~~~--~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s---~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD  109 (243)
T 3bkw_A           35 LRAMLPEVGG--LRIVDLGCGFGWFCRWAHEHGASYVLGLDLS---EKMLARARAAGPDTGITYERADLDKLHLPQDSFD  109 (243)
T ss_dssp             HHHHSCCCTT--CEEEEETCTTCHHHHHHHHTTCSEEEEEESC---HHHHHHHHHTSCSSSEEEEECCGGGCCCCTTCEE
T ss_pred             HHHhccccCC--CEEEEEcCcCCHHHHHHHHCCCCeEEEEcCC---HHHHHHHHHhcccCCceEEEcChhhccCCCCCce
Confidence            4455554444  4899999999999999999887 88888875   33333344332    3445566778899999999


Q ss_pred             hheecccccCccChhcHHHHHHHHHhcccCCcEEEEeeccC------C---------------h----------------
Q 046488          390 LIHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDSFFC------A---------------K----------------  432 (480)
Q Consensus       390 lV~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~f~~------~---------------~----------------  432 (480)
                      +|++..+++|+.+.   ..++.++.|+|||||++++.....      .               .                
T Consensus       110 ~v~~~~~l~~~~~~---~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (243)
T 3bkw_A          110 LAYSSLALHYVEDV---ARLFRTVHQALSPGGHFVFSTEHPIYMAPARPGWAIDAEGRRTWPIDRYLVEGPRKTDWLAKG  186 (243)
T ss_dssp             EEEEESCGGGCSCH---HHHHHHHHHHEEEEEEEEEEEECHHHHCCSSCSCEECTTSCEEEEECCTTCCEEECTTHHHHS
T ss_pred             EEEEeccccccchH---HHHHHHHHHhcCcCcEEEEEeCCcccccCcCcceeecCCCceEEeecccccccceeeeeccCc
Confidence            99999999988765   579999999999999999863100      0               0                


Q ss_pred             -----hhHHHHHHHHHHcCceeeEEEE
Q 046488          433 -----EDMNDYLEVFKMLKYKKHKWVV  454 (480)
Q Consensus       433 -----edL~~~~~~l~~lGfkkl~W~~  454 (480)
                           ...+.+..+++..||+.+.+..
T Consensus       187 ~~~~~~t~~~~~~~l~~aGF~~~~~~~  213 (243)
T 3bkw_A          187 VVKHHRTVGTTLNALIRSGFAIEHVEE  213 (243)
T ss_dssp             CCEEECCHHHHHHHHHHTTCEEEEEEE
T ss_pred             eEEEeccHHHHHHHHHHcCCEeeeecc
Confidence                 0246688999999999887654

>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42

Probab=99.53  E-value=3.4e-14  Score=133.62  Aligned_cols=127  Identities=14%  Similarity=0.046  Sum_probs=92.7

Q ss_pred             CCeEEEECCCCcHHHHHHhhCC-CEEEEEecCCChhHHHHHHHh----CCCCeeeecccCCCCCCCccchheecccccCc
Q 046488          326 IRIGLDFSIGTGTFAARMREFN-VTLVSAIINLGAPFNEMIALR----GLVPLYITINQRVPFFDNTLDLIHTTRFLDGW  400 (480)
Q Consensus       326 iR~VLDVGCGtG~fAa~Lae~g-V~Vv~vd~d~~~~~~~~iA~r----glip~~~~~ae~LPFpd~SFDlV~ss~vL~h~  400 (480)
                      ..+|||||||+|.++..+++++ ..+++++++  ..+...+..+    ..+.+..++.+.+|+++++||+|++..+++|+
T Consensus        94 ~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s--~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~  171 (254)
T 1xtp_A           94 TSRALDCGAGIGRITKNLLTKLYATTDLLEPV--KHMLEEAKRELAGMPVGKFILASMETATLPPNTYDLIVIQWTAIYL  171 (254)
T ss_dssp             CSEEEEETCTTTHHHHHTHHHHCSEEEEEESC--HHHHHHHHHHTTTSSEEEEEESCGGGCCCCSSCEEEEEEESCGGGS
T ss_pred             CCEEEEECCCcCHHHHHHHHhhcCEEEEEeCC--HHHHHHHHHHhccCCceEEEEccHHHCCCCCCCeEEEEEcchhhhC
Confidence            4589999999999999998874 457777765  2333322222    12344556677899999999999999999998


Q ss_pred             cChhcHHHHHHHHHhcccCCcEEEEeeccCCh-------------hhHHHHHHHHHHcCceeeEEEEe
Q 046488          401 IDFVLLDFILYDWDRVLRPGGLLWIDSFFCAK-------------EDMNDYLEVFKMLKYKKHKWVVV  455 (480)
Q Consensus       401 ~d~~~l~~~L~EI~RVLKPGG~fiI~~f~~~~-------------edL~~~~~~l~~lGfkkl~W~~~  455 (480)
                      .+.+ +..++.++.|+|||||++++..+....             ...+.+.++++..||+.+.....
T Consensus       172 ~~~~-~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~  238 (254)
T 1xtp_A          172 TDAD-FVKFFKHCQQALTPNGYIFFKENCSTGDRFLVDKEDSSLTRSDIHYKRLFNESGVRVVKEAFQ  238 (254)
T ss_dssp             CHHH-HHHHHHHHHHHEEEEEEEEEEEEBC--CCEEEETTTTEEEBCHHHHHHHHHHHTCCEEEEEEC
T ss_pred             CHHH-HHHHHHHHHHhcCCCeEEEEEecCCCcccceecccCCcccCCHHHHHHHHHHCCCEEEEeeec
Confidence            6432 367999999999999999997532111             12356888999999998876554

>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15

Probab=99.53  E-value=4.1e-14  Score=136.44  Aligned_cols=149  Identities=11%  Similarity=0.040  Sum_probs=95.7

Q ss_pred             CCeEEEECCCCcHHHHHHhhCCC-EEEEEecCCChhHHHHHHH---hC--C-----------------------------
Q 046488          326 IRIGLDFSIGTGTFAARMREFNV-TLVSAIINLGAPFNEMIAL---RG--L-----------------------------  370 (480)
Q Consensus       326 iR~VLDVGCGtG~fAa~Lae~gV-~Vv~vd~d~~~~~~~~iA~---rg--l-----------------------------  370 (480)
                      ..+|||||||+|.++..++..++ .++++|++.  .+...+.+   ..  .                             
T Consensus        56 g~~vLDiGCG~G~~~~~~~~~~~~~v~g~D~s~--~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~~~  133 (263)
T 2a14_A           56 GDTLIDIGSGPTIYQVLAACDSFQDITLSDFTD--RNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLRA  133 (263)
T ss_dssp             EEEEEESSCTTCCGGGTTGGGTEEEEEEEESCH--HHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHHH
T ss_pred             CceEEEeCCCccHHHHHHHHhhhcceeeccccH--HHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHHHHh
Confidence            35899999999999888877776 477777652  22221111   00  0                             


Q ss_pred             -CC-eeeecccC-CCCC---CCccchheecccccCcc-ChhcHHHHHHHHHhcccCCcEEEEeeccCCh-----------
Q 046488          371 -VP-LYITINQR-VPFF---DNTLDLIHTTRFLDGWI-DFVLLDFILYDWDRVLRPGGLLWIDSFFCAK-----------  432 (480)
Q Consensus       371 -ip-~~~~~ae~-LPFp---d~SFDlV~ss~vL~h~~-d~~~l~~~L~EI~RVLKPGG~fiI~~f~~~~-----------  432 (480)
                       +. +...+... .|++   +++||+|+++.+|+|+. +...+..++.+++|+|||||+|++..+....           
T Consensus       134 ~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LKPGG~li~~~~~~~~~~~~g~~~~~~  213 (263)
T 2a14_A          134 AVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRLPSYMVGKREFSC  213 (263)
T ss_dssp             HEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEEETTEEEEC
T ss_pred             hhheEEeccccCCCCCCccccCCCCEeeehHHHHHhcCCHHHHHHHHHHHHHHcCCCcEEEEEEeecCccceeCCeEeec
Confidence             11 33334333 4553   67999999999998863 3334467999999999999999998532210           


Q ss_pred             --hhHHHHHHHHHHcCceeeEEEEeec-cCC--CCcceeEEEEEEeCCC
Q 046488          433 --EDMNDYLEVFKMLKYKKHKWVVVPK-RDK--DDREVFFSAVLEKPPR  476 (480)
Q Consensus       433 --edL~~~~~~l~~lGfkkl~W~~~~k-~d~--~~~E~~lsav~qKP~~  476 (480)
                        -..+.+.++++..||..+.+..... ...  ...+.++..+.+|+..
T Consensus       214 ~~~~~~~l~~~l~~aGF~i~~~~~~~~~~~~~~~~~~~~~~~~a~K~~~  262 (263)
T 2a14_A          214 VALEKGEVEQAVLDAGFDIEQLLHSPQSYSVTNAANNGVCCIVARKKPG  262 (263)
T ss_dssp             CCCCHHHHHHHHHHTTEEEEEEEEECCCCCTTTCCCCCEEEEEEEECC-
T ss_pred             cccCHHHHHHHHHHCCCEEEEEeecccccccccCCCCceEEEEEEecCC
Confidence              1345688899999999887655321 111  1123455667899753

>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*

Probab=99.52  E-value=6.5e-14  Score=135.18  Aligned_cols=108  Identities=19%  Similarity=0.101  Sum_probs=79.3

Q ss_pred             HHHhcCCCCCCCCeEEEECCCCcHHHHHHhhCCCEEEEEecCCChhHHHHHHH----hCC------CCeeeecccCCC--
Q 046488          315 IPEVLDIKPGEIRIGLDFSIGTGTFAARMREFNVTLVSAIINLGAPFNEMIAL----RGL------VPLYITINQRVP--  382 (480)
Q Consensus       315 I~~vL~l~~g~iR~VLDVGCGtG~fAa~Lae~gV~Vv~vd~d~~~~~~~~iA~----rgl------ip~~~~~ae~LP--  382 (480)
                      +...++..++  .+|||||||+|.++..|++.+..+++++++.  .+...+.+    ++.      +.+..+....+|  
T Consensus        49 l~~~l~~~~~--~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~--~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  124 (293)
T 3thr_A           49 LLGLLRQHGC--HRVLDVACGTGVDSIMLVEEGFSVTSVDASD--KMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKD  124 (293)
T ss_dssp             HHHHHHHTTC--CEEEETTCTTSHHHHHHHHTTCEEEEEESCH--HHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHH
T ss_pred             HHHHhcccCC--CEEEEecCCCCHHHHHHHHCCCeEEEEECCH--HHHHHHHHhhhhcccccccceeeEeecChhhCccc
Confidence            3344444433  4899999999999999999999999988763  33222211    111      223445566777  


Q ss_pred             -CCCCccchheec-ccccCccC----hhcHHHHHHHHHhcccCCcEEEEe
Q 046488          383 -FFDNTLDLIHTT-RFLDGWID----FVLLDFILYDWDRVLRPGGLLWID  426 (480)
Q Consensus       383 -Fpd~SFDlV~ss-~vL~h~~d----~~~l~~~L~EI~RVLKPGG~fiI~  426 (480)
                       +++++||+|+|. .+++|+.+    ......++.++.|+|||||++++.
T Consensus       125 ~~~~~~fD~V~~~g~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~  174 (293)
T 3thr_A          125 VPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVID  174 (293)
T ss_dssp             SCCTTCEEEEEECTTCGGGSCCSSSSSHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred             cccCCCeEEEEEcChHHhhcCccccCHHHHHHHHHHHHHHcCCCeEEEEE
Confidence             899999999998 89999887    233467999999999999999976

>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}

Probab=99.52  E-value=1.5e-13  Score=126.24  Aligned_cols=123  Identities=15%  Similarity=0.126  Sum_probs=94.8

Q ss_pred             CCeEEEECCCCcHHHHHHhhCCCEEEEEecCCChhHHHHHHHhCCCCeeeecccC--CCCCCCccchheecccccCccCh
Q 046488          326 IRIGLDFSIGTGTFAARMREFNVTLVSAIINLGAPFNEMIALRGLVPLYITINQR--VPFFDNTLDLIHTTRFLDGWIDF  403 (480)
Q Consensus       326 iR~VLDVGCGtG~fAa~Lae~gV~Vv~vd~d~~~~~~~~iA~rglip~~~~~ae~--LPFpd~SFDlV~ss~vL~h~~d~  403 (480)
                      ..+|||+|||+|.++..+++.+..+++++++   +.....+.+....+..++.+.  +|+++++||+|++..+++|+.+.
T Consensus        33 ~~~vLdiG~G~G~~~~~l~~~~~~~~~~D~~---~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~v~~~~~l~~~~~~  109 (230)
T 3cc8_A           33 WKEVLDIGCSSGALGAAIKENGTRVSGIEAF---PEAAEQAKEKLDHVVLGDIETMDMPYEEEQFDCVIFGDVLEHLFDP  109 (230)
T ss_dssp             CSEEEEETCTTSHHHHHHHTTTCEEEEEESS---HHHHHHHHTTSSEEEESCTTTCCCCSCTTCEEEEEEESCGGGSSCH
T ss_pred             CCcEEEeCCCCCHHHHHHHhcCCeEEEEeCC---HHHHHHHHHhCCcEEEcchhhcCCCCCCCccCEEEECChhhhcCCH
Confidence            3589999999999999999888888888875   334445555555555566544  78889999999999999998776


Q ss_pred             hcHHHHHHHHHhcccCCcEEEEeeccC----------------C-----------hhhHHHHHHHHHHcCceeeEEEE
Q 046488          404 VLLDFILYDWDRVLRPGGLLWIDSFFC----------------A-----------KEDMNDYLEVFKMLKYKKHKWVV  454 (480)
Q Consensus       404 ~~l~~~L~EI~RVLKPGG~fiI~~f~~----------------~-----------~edL~~~~~~l~~lGfkkl~W~~  454 (480)
                         ..++.++.|+|||||++++.....                .           .-..+.+.++++..||+.+.+..
T Consensus       110 ---~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~  184 (230)
T 3cc8_A          110 ---WAVIEKVKPYIKQNGVILASIPNVSHISVLAPLLAGNWTYTEYGLLDKTHIRFFTFNEMLRMFLKAGYSISKVDR  184 (230)
T ss_dssp             ---HHHHHHTGGGEEEEEEEEEEEECTTSHHHHHHHHTTCCCCBSSSTTBTTCCCCCCHHHHHHHHHHTTEEEEEEEE
T ss_pred             ---HHHHHHHHHHcCCCCEEEEEeCCcchHHHHHHHhcCCceeccCCCCCcceEEEecHHHHHHHHHHcCCeEEEEEe
Confidence               469999999999999999863110                0           01245688899999999876554

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}

Probab=99.52  E-value=9.7e-14  Score=133.83  Aligned_cols=130  Identities=14%  Similarity=0.219  Sum_probs=95.9

Q ss_pred             HhcCCCCCCCCeEEEECCCCcHHHHHHhhCCCEEEEEecCCChhHHHHHHHh-CCCCeeeecccCCCCCCCccchheecc
Q 046488          317 EVLDIKPGEIRIGLDFSIGTGTFAARMREFNVTLVSAIINLGAPFNEMIALR-GLVPLYITINQRVPFFDNTLDLIHTTR  395 (480)
Q Consensus       317 ~vL~l~~g~iR~VLDVGCGtG~fAa~Lae~gV~Vv~vd~d~~~~~~~~iA~r-glip~~~~~ae~LPFpd~SFDlV~ss~  395 (480)
                      +.+.+.++  .+|||||||+|.++..+++.+..+++++++  ..+......+ ..+.+..++++.+|+ +++||+|++..
T Consensus        51 ~~l~~~~~--~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s--~~~~~~a~~~~~~~~~~~~d~~~~~~-~~~fD~v~~~~  125 (279)
T 3ccf_A           51 QLLNPQPG--EFILDLGCGTGQLTEKIAQSGAEVLGTDNA--ATMIEKARQNYPHLHFDVADARNFRV-DKPLDAVFSNA  125 (279)
T ss_dssp             HHHCCCTT--CEEEEETCTTSHHHHHHHHTTCEEEEEESC--HHHHHHHHHHCTTSCEEECCTTTCCC-SSCEEEEEEES
T ss_pred             HHhCCCCC--CEEEEecCCCCHHHHHHHhCCCeEEEEECC--HHHHHHHHhhCCCCEEEECChhhCCc-CCCcCEEEEcc
Confidence            44455444  489999999999999999988899998875  2333333222 245667777888997 68999999999


Q ss_pred             cccCccChhcHHHHHHHHHhcccCCcEEEEeeccCCh----------------------------hhHHHHHHHHHHcCc
Q 046488          396 FLDGWIDFVLLDFILYDWDRVLRPGGLLWIDSFFCAK----------------------------EDMNDYLEVFKMLKY  447 (480)
Q Consensus       396 vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~f~~~~----------------------------edL~~~~~~l~~lGf  447 (480)
                      +++|+.+.   ..++.|+.|+|||||++++..+....                            ...+.+..+++..||
T Consensus       126 ~l~~~~d~---~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf  202 (279)
T 3ccf_A          126 MLHWVKEP---EAAIASIHQALKSGGRFVAEFGGKGNIKYILEALYNALETLGIHNPQALNPWYFPSIGEYVNILEKQGF  202 (279)
T ss_dssp             CGGGCSCH---HHHHHHHHHHEEEEEEEEEEEECTTTTHHHHHHHHHHHHHHTCCCGGGGCCCCCCCHHHHHHHHHHHTE
T ss_pred             hhhhCcCH---HHHHHHHHHhcCCCcEEEEEecCCcchHHHHHHHHHHHHhcCCccccCcCceeCCCHHHHHHHHHHcCC
Confidence            99988766   46999999999999999986432211                            012446778888899


Q ss_pred             eeeEEEE
Q 046488          448 KKHKWVV  454 (480)
Q Consensus       448 kkl~W~~  454 (480)
                      +.+.+..
T Consensus       203 ~~~~~~~  209 (279)
T 3ccf_A          203 DVTYAAL  209 (279)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEE
Confidence            8766543

>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}

Probab=99.52  E-value=1.3e-13  Score=127.24  Aligned_cols=136  Identities=20%  Similarity=0.210  Sum_probs=98.9

Q ss_pred             hHHHhcCCCCCCCCeEEEECCCCcHHHHHHhhCCCEEEEEecCCChhHHHHHHHhCCCCeeeecccCCCCCCCccchhee
Q 046488          314 LIPEVLDIKPGEIRIGLDFSIGTGTFAARMREFNVTLVSAIINLGAPFNEMIALRGLVPLYITINQRVPFFDNTLDLIHT  393 (480)
Q Consensus       314 ~I~~vL~l~~g~iR~VLDVGCGtG~fAa~Lae~gV~Vv~vd~d~~~~~~~~iA~rglip~~~~~ae~LPFpd~SFDlV~s  393 (480)
                      ++..+....++  .+|||+|||+|.++..++   ..+++++++..           .+.+..++++.+|+++++||+|++
T Consensus        58 ~~~~l~~~~~~--~~vLDiG~G~G~~~~~l~---~~v~~~D~s~~-----------~~~~~~~d~~~~~~~~~~fD~v~~  121 (215)
T 2zfu_A           58 IARDLRQRPAS--LVVADFGCGDCRLASSIR---NPVHCFDLASL-----------DPRVTVCDMAQVPLEDESVDVAVF  121 (215)
T ss_dssp             HHHHHHTSCTT--SCEEEETCTTCHHHHHCC---SCEEEEESSCS-----------STTEEESCTTSCSCCTTCEEEEEE
T ss_pred             HHHHHhccCCC--CeEEEECCcCCHHHHHhh---ccEEEEeCCCC-----------CceEEEeccccCCCCCCCEeEEEE
Confidence            34434334333  479999999999999885   46777776642           355667778889999999999999


Q ss_pred             cccccCccChhcHHHHHHHHHhcccCCcEEEEeeccCChhhHHHHHHHHHHcCceeeEEEEeeccCCCCcceeEEEEEEe
Q 046488          394 TRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDSFFCAKEDMNDYLEVFKMLKYKKHKWVVVPKRDKDDREVFFSAVLEK  473 (480)
Q Consensus       394 s~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~f~~~~edL~~~~~~l~~lGfkkl~W~~~~k~d~~~~E~~lsav~qK  473 (480)
                      ..+++ +.+.   ..++.++.|+|||||++++..+.......+.+...++..||+.+.....       ...+...+++|
T Consensus       122 ~~~l~-~~~~---~~~l~~~~~~L~~gG~l~i~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~-------~~~~~~~~~~k  190 (215)
T 2zfu_A          122 CLSLM-GTNI---RDFLEEANRVLKPGGLLKVAEVSSRFEDVRTFLRAVTKLGFKIVSKDLT-------NSHFFLFDFQK  190 (215)
T ss_dssp             ESCCC-SSCH---HHHHHHHHHHEEEEEEEEEEECGGGCSCHHHHHHHHHHTTEEEEEEECC-------STTCEEEEEEE
T ss_pred             ehhcc-ccCH---HHHHHHHHHhCCCCeEEEEEEcCCCCCCHHHHHHHHHHCCCEEEEEecC-------CCeEEEEEEEe
Confidence            99985 4443   5799999999999999999876543335567888999999987653221       22344567777


Q ss_pred             CCC
Q 046488          474 PPR  476 (480)
Q Consensus       474 P~~  476 (480)
                      +..
T Consensus       191 ~~~  193 (215)
T 2zfu_A          191 TGP  193 (215)
T ss_dssp             CSS
T ss_pred             cCc
Confidence            644

>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}

Probab=99.52  E-value=5e-14  Score=135.98  Aligned_cols=124  Identities=20%  Similarity=0.175  Sum_probs=93.0

Q ss_pred             CeEEEECCCCcHHHHHHhhCCCEEEEEecCCChhHHHHHH---H-hCC---CCeeeecccCCC-CCCCccchheeccccc
Q 046488          327 RIGLDFSIGTGTFAARMREFNVTLVSAIINLGAPFNEMIA---L-RGL---VPLYITINQRVP-FFDNTLDLIHTTRFLD  398 (480)
Q Consensus       327 R~VLDVGCGtG~fAa~Lae~gV~Vv~vd~d~~~~~~~~iA---~-rgl---ip~~~~~ae~LP-Fpd~SFDlV~ss~vL~  398 (480)
                      .+|||||||+|.++..+++.+..+++++++.  .+...+.   . .+.   +.+..++.+.++ +++++||+|++..+++
T Consensus        70 ~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~--~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~~l~  147 (285)
T 4htf_A           70 LRVLDAGGGEGQTAIKMAERGHQVILCDLSA--QMIDRAKQAAEAKGVSDNMQFIHCAAQDVASHLETPVDLILFHAVLE  147 (285)
T ss_dssp             CEEEEETCTTCHHHHHHHHTTCEEEEEESCH--HHHHHHHHHHHC-CCGGGEEEEESCGGGTGGGCSSCEEEEEEESCGG
T ss_pred             CEEEEeCCcchHHHHHHHHCCCEEEEEECCH--HHHHHHHHHHHhcCCCcceEEEEcCHHHhhhhcCCCceEEEECchhh
Confidence            5899999999999999999999999988762  2322221   1 122   335566677777 8899999999999999


Q ss_pred             CccChhcHHHHHHHHHhcccCCcEEEEeeccCCh-------------------------------hhHHHHHHHHHHcCc
Q 046488          399 GWIDFVLLDFILYDWDRVLRPGGLLWIDSFFCAK-------------------------------EDMNDYLEVFKMLKY  447 (480)
Q Consensus       399 h~~d~~~l~~~L~EI~RVLKPGG~fiI~~f~~~~-------------------------------edL~~~~~~l~~lGf  447 (480)
                      |+.+.   ..++.++.|+|||||++++..+....                               -..+.+..+++..||
T Consensus       148 ~~~~~---~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf  224 (285)
T 4htf_A          148 WVADP---RSVLQTLWSVLRPGGVLSLMFYNAHGLLMHNMVAGNFDYVQAGMPKKKKRTLSPDYPRDPTQVYLWLEEAGW  224 (285)
T ss_dssp             GCSCH---HHHHHHHHHTEEEEEEEEEEEEBHHHHHHHHHHTTCHHHHHTTCCCC----CCCSCCBCHHHHHHHHHHTTC
T ss_pred             cccCH---HHHHHHHHHHcCCCeEEEEEEeCCchHHHHHHHhcCHHHHhhhccccccccCCCCCCCCHHHHHHHHHHCCC
Confidence            98776   46999999999999999986431110                               013567889999999


Q ss_pred             eeeEEEEe
Q 046488          448 KKHKWVVV  455 (480)
Q Consensus       448 kkl~W~~~  455 (480)
                      +.+.+...
T Consensus       225 ~v~~~~~~  232 (285)
T 4htf_A          225 QIMGKTGV  232 (285)
T ss_dssp             EEEEEEEE
T ss_pred             ceeeeeeE
Confidence            98766543

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}

Probab=99.52  E-value=5.2e-14  Score=131.34  Aligned_cols=99  Identities=16%  Similarity=0.083  Sum_probs=76.8

Q ss_pred             CCeEEEECCCCcHHHHHHhhC--CCEEEEEecCCChhHHHHHHHh----CCCCeeeecccCCCCCCCccchheecccccC
Q 046488          326 IRIGLDFSIGTGTFAARMREF--NVTLVSAIINLGAPFNEMIALR----GLVPLYITINQRVPFFDNTLDLIHTTRFLDG  399 (480)
Q Consensus       326 iR~VLDVGCGtG~fAa~Lae~--gV~Vv~vd~d~~~~~~~~iA~r----glip~~~~~ae~LPFpd~SFDlV~ss~vL~h  399 (480)
                      ..+|||+|||+|.++..+++.  +..+++++++.  .+...+..+    +.+.+..++...+|++ ++||+|++..+++|
T Consensus        45 ~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~--~~~~~a~~~~~~~~~~~~~~~d~~~~~~~-~~fD~v~~~~~l~~  121 (234)
T 3dtn_A           45 NPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSE--KMLEIAKNRFRGNLKVKYIEADYSKYDFE-EKYDMVVSALSIHH  121 (234)
T ss_dssp             SCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCH--HHHHHHHHHTCSCTTEEEEESCTTTCCCC-SCEEEEEEESCGGG
T ss_pred             CCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCH--HHHHHHHHhhccCCCEEEEeCchhccCCC-CCceEEEEeCcccc
Confidence            358999999999999999987  77888888752  333322222    1344556778888887 99999999999999


Q ss_pred             ccChhcHHHHHHHHHhcccCCcEEEEeec
Q 046488          400 WIDFVLLDFILYDWDRVLRPGGLLWIDSF  428 (480)
Q Consensus       400 ~~d~~~l~~~L~EI~RVLKPGG~fiI~~f  428 (480)
                      +.+.. ...++.++.|+|||||++++..+
T Consensus       122 ~~~~~-~~~~l~~~~~~LkpgG~l~~~~~  149 (234)
T 3dtn_A          122 LEDED-KKELYKRSYSILKESGIFINADL  149 (234)
T ss_dssp             SCHHH-HHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             CCHHH-HHHHHHHHHHhcCCCcEEEEEEe
Confidence            86553 24699999999999999998753

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*

Probab=99.52  E-value=6.6e-14  Score=132.14  Aligned_cols=121  Identities=17%  Similarity=0.262  Sum_probs=90.6

Q ss_pred             CeEEEECCCCcHHHHHHhhCC-CEEEEEecCCChhHHH----HHHHhCC---CCeeeecccCCCCCCCccchheeccccc
Q 046488          327 RIGLDFSIGTGTFAARMREFN-VTLVSAIINLGAPFNE----MIALRGL---VPLYITINQRVPFFDNTLDLIHTTRFLD  398 (480)
Q Consensus       327 R~VLDVGCGtG~fAa~Lae~g-V~Vv~vd~d~~~~~~~----~iA~rgl---ip~~~~~ae~LPFpd~SFDlV~ss~vL~  398 (480)
                      .+|||+|||+|.++..+++.+ ..+++++++.  .+..    .+...+.   +.+..++.+.+|+++++||+|++..+++
T Consensus        48 ~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~--~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~  125 (257)
T 3f4k_A           48 AKIADIGCGTGGQTLFLADYVKGQITGIDLFP--DFIEIFNENAVKANCADRVKGITGSMDNLPFQNEELDLIWSEGAIY  125 (257)
T ss_dssp             CEEEEETCTTSHHHHHHHHHCCSEEEEEESCH--HHHHHHHHHHHHTTCTTTEEEEECCTTSCSSCTTCEEEEEEESCSC
T ss_pred             CeEEEeCCCCCHHHHHHHHhCCCeEEEEECCH--HHHHHHHHHHHHcCCCCceEEEECChhhCCCCCCCEEEEEecChHh
Confidence            489999999999999999874 4888888752  2222    2222232   4455677889999999999999999998


Q ss_pred             CccChhcHHHHHHHHHhcccCCcEEEEee--ccCCh----------------hhHHHHHHHHHHcCceeeEEE
Q 046488          399 GWIDFVLLDFILYDWDRVLRPGGLLWIDS--FFCAK----------------EDMNDYLEVFKMLKYKKHKWV  453 (480)
Q Consensus       399 h~~d~~~l~~~L~EI~RVLKPGG~fiI~~--f~~~~----------------edL~~~~~~l~~lGfkkl~W~  453 (480)
                      |+ +.   ..++.++.|+|||||++++..  |....                .....+.++++..||+.+...
T Consensus       126 ~~-~~---~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~  194 (257)
T 3f4k_A          126 NI-GF---ERGMNEWSKYLKKGGFIAVSEASWFTSERPAEIEDFWMDAYPEISVIPTCIDKMERAGYTPTAHF  194 (257)
T ss_dssp             CC-CH---HHHHHHHHTTEEEEEEEEEEEEEESSSCCCHHHHHHHHHHCTTCCBHHHHHHHHHHTTEEEEEEE
T ss_pred             hc-CH---HHHHHHHHHHcCCCcEEEEEEeeccCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHCCCeEEEEE
Confidence            88 44   569999999999999999875  22221                013457788999999877643

>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}

Probab=99.52  E-value=4.7e-14  Score=135.24  Aligned_cols=129  Identities=11%  Similarity=0.152  Sum_probs=94.4

Q ss_pred             HHhcCCCCCCCCeEEEECCCCcHHHHHHhhCCCEEEEEecCCChhHHHHHHHhC-CCCeeeecccCCCCCCCccchheec
Q 046488          316 PEVLDIKPGEIRIGLDFSIGTGTFAARMREFNVTLVSAIINLGAPFNEMIALRG-LVPLYITINQRVPFFDNTLDLIHTT  394 (480)
Q Consensus       316 ~~vL~l~~g~iR~VLDVGCGtG~fAa~Lae~gV~Vv~vd~d~~~~~~~~iA~rg-lip~~~~~ae~LPFpd~SFDlV~ss  394 (480)
                      .+.+++.++  .+|||||||+|.++..+++.+..+++++++   +.+...+.+. .+.+..++++.+|+++++||+|++.
T Consensus        27 ~~~~~~~~~--~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s---~~~~~~a~~~~~~~~~~~d~~~~~~~~~~fD~v~~~  101 (261)
T 3ege_A           27 INLLNLPKG--SVIADIGAGTGGYSVALANQGLFVYAVEPS---IVMRQQAVVHPQVEWFTGYAENLALPDKSVDGVISI  101 (261)
T ss_dssp             HHHHCCCTT--CEEEEETCTTSHHHHHHHTTTCEEEEECSC---HHHHHSSCCCTTEEEECCCTTSCCSCTTCBSEEEEE
T ss_pred             HHHhCCCCC--CEEEEEcCcccHHHHHHHhCCCEEEEEeCC---HHHHHHHHhccCCEEEECchhhCCCCCCCEeEEEEc
Confidence            344554444  489999999999999999988899998875   2222222222 3445567788899999999999999


Q ss_pred             ccccCccChhcHHHHHHHHHhcccCCcEEEEeeccCCh---------------------hhHHHHHHHHHHcCceeeEEE
Q 046488          395 RFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDSFFCAK---------------------EDMNDYLEVFKMLKYKKHKWV  453 (480)
Q Consensus       395 ~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~f~~~~---------------------edL~~~~~~l~~lGfkkl~W~  453 (480)
                      .+++|+.+.   ..++.++.|+|| ||++++..+....                     ...+.+. +++..||..+...
T Consensus       102 ~~l~~~~~~---~~~l~~~~~~Lk-gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~aGF~~v~~~  176 (261)
T 3ege_A          102 LAIHHFSHL---EKSFQEMQRIIR-DGTIVLLTFDIRLAQRIWLYDYFPFLWEDALRFLPLDEQIN-LLQENTKRRVEAI  176 (261)
T ss_dssp             SCGGGCSSH---HHHHHHHHHHBC-SSCEEEEEECGGGCCCCGGGGTCHHHHHHHHTSCCHHHHHH-HHHHHHCSEEEEE
T ss_pred             chHhhccCH---HHHHHHHHHHhC-CcEEEEEEcCCchhHHHHHHHHHHHHhhhhhhhCCCHHHHH-HHHHcCCCceeEE
Confidence            999999766   569999999999 9988776432110                     0123466 8999999876544


Q ss_pred             E
Q 046488          454 V  454 (480)
Q Consensus       454 ~  454 (480)
                      .
T Consensus       177 ~  177 (261)
T 3ege_A          177 P  177 (261)
T ss_dssp             E
T ss_pred             E
Confidence            3

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*

Probab=99.51  E-value=9.4e-14  Score=132.84  Aligned_cols=122  Identities=18%  Similarity=0.235  Sum_probs=91.6

Q ss_pred             CeEEEECCCCcHHHHHHhhC-CCEEEEEecCCChhHHH----HHHHhCC---CCeeeecccCCCCCCCccchheeccccc
Q 046488          327 RIGLDFSIGTGTFAARMREF-NVTLVSAIINLGAPFNE----MIALRGL---VPLYITINQRVPFFDNTLDLIHTTRFLD  398 (480)
Q Consensus       327 R~VLDVGCGtG~fAa~Lae~-gV~Vv~vd~d~~~~~~~----~iA~rgl---ip~~~~~ae~LPFpd~SFDlV~ss~vL~  398 (480)
                      .+|||||||+|.++..+++. +..+++++++.  .+..    .+...+.   +.+..++.+.+|+++++||+|++..+++
T Consensus        48 ~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~--~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~i~~~~~~~  125 (267)
T 3kkz_A           48 SLIADIGCGTGGQTMVLAGHVTGQVTGLDFLS--GFIDIFNRNARQSGLQNRVTGIVGSMDDLPFRNEELDLIWSEGAIY  125 (267)
T ss_dssp             CEEEEETCTTCHHHHHHHTTCSSEEEEEESCH--HHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCTTCEEEEEESSCGG
T ss_pred             CEEEEeCCCCCHHHHHHHhccCCEEEEEeCCH--HHHHHHHHHHHHcCCCcCcEEEEcChhhCCCCCCCEEEEEEcCCce
Confidence            58999999999999999987 44888888753  2222    2222232   4456677888999999999999999998


Q ss_pred             CccChhcHHHHHHHHHhcccCCcEEEEeecc--CCh--h--------------hHHHHHHHHHHcCceeeEEEE
Q 046488          399 GWIDFVLLDFILYDWDRVLRPGGLLWIDSFF--CAK--E--------------DMNDYLEVFKMLKYKKHKWVV  454 (480)
Q Consensus       399 h~~d~~~l~~~L~EI~RVLKPGG~fiI~~f~--~~~--e--------------dL~~~~~~l~~lGfkkl~W~~  454 (480)
                      |+ +.   ..++.++.|+|||||++++....  ...  .              ....+.+++++.||+.+....
T Consensus       126 ~~-~~---~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~  195 (267)
T 3kkz_A          126 NI-GF---ERGLNEWRKYLKKGGYLAVSECSWFTDERPAEINDFWMDAYPEIDTIPNQVAKIHKAGYLPVATFI  195 (267)
T ss_dssp             GT-CH---HHHHHHHGGGEEEEEEEEEEEEEESSSCCCHHHHHHHHHHCTTCEEHHHHHHHHHHTTEEEEEEEE
T ss_pred             ec-CH---HHHHHHHHHHcCCCCEEEEEEeeecCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHCCCEEEEEEE
Confidence            88 44   56999999999999999987522  111  0              134577889999999876544

>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*

Probab=99.51  E-value=1e-13  Score=136.48  Aligned_cols=122  Identities=12%  Similarity=0.042  Sum_probs=93.1

Q ss_pred             CeEEEECCCCcHHHHHHhhC-CCEEEEEecCCChhHHH----HHHHhC---CCCeeeecccCCCCCCCccchheeccccc
Q 046488          327 RIGLDFSIGTGTFAARMREF-NVTLVSAIINLGAPFNE----MIALRG---LVPLYITINQRVPFFDNTLDLIHTTRFLD  398 (480)
Q Consensus       327 R~VLDVGCGtG~fAa~Lae~-gV~Vv~vd~d~~~~~~~----~iA~rg---lip~~~~~ae~LPFpd~SFDlV~ss~vL~  398 (480)
                      .+|||+|||+|.++..++++ +..+++++++.  .+..    .+...+   .+.+..++.+.+|+++++||+|++..+++
T Consensus       119 ~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~--~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~  196 (312)
T 3vc1_A          119 DTLVDAGCGRGGSMVMAHRRFGSRVEGVTLSA--AQADFGNRRARELRIDDHVRSRVCNMLDTPFDKGAVTASWNNESTM  196 (312)
T ss_dssp             CEEEEESCTTSHHHHHHHHHHCCEEEEEESCH--HHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCTTCEEEEEEESCGG
T ss_pred             CEEEEecCCCCHHHHHHHHHcCCEEEEEeCCH--HHHHHHHHHHHHcCCCCceEEEECChhcCCCCCCCEeEEEECCchh
Confidence            48999999999999999988 88999988752  2222    222233   24456677889999999999999999999


Q ss_pred             CccChhcHHHHHHHHHhcccCCcEEEEeeccCCh--------------------hhHHHHHHHHHHcCceeeEEEE
Q 046488          399 GWIDFVLLDFILYDWDRVLRPGGLLWIDSFFCAK--------------------EDMNDYLEVFKMLKYKKHKWVV  454 (480)
Q Consensus       399 h~~d~~~l~~~L~EI~RVLKPGG~fiI~~f~~~~--------------------edL~~~~~~l~~lGfkkl~W~~  454 (480)
                      |+ +.   ..++.++.|+|||||++++..+....                    ...+.+.+++++.||+.+....
T Consensus       197 ~~-~~---~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~aGf~~~~~~~  268 (312)
T 3vc1_A          197 YV-DL---HDLFSEHSRFLKVGGRYVTITGCWNPRYGQPSKWVSQINAHFECNIHSRREYLRAMADNRLVPHTIVD  268 (312)
T ss_dssp             GS-CH---HHHHHHHHHHEEEEEEEEEEEEEECTTTCSCCHHHHHHHHHHTCCCCBHHHHHHHHHTTTEEEEEEEE
T ss_pred             hC-CH---HHHHHHHHHHcCCCcEEEEEEccccccccchhHHHHHHHhhhcCCCCCHHHHHHHHHHCCCEEEEEEe
Confidence            88 43   57999999999999999987532221                    0134577899999998776554

>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A

Probab=99.50  E-value=8.9e-14  Score=131.13  Aligned_cols=95  Identities=19%  Similarity=0.249  Sum_probs=76.5

Q ss_pred             CeEEEECCCCcHHHHHHhhCCCEEEEEecCCChhHHHHHHHh-----CCCCeeeecccCCCCCCCccchheecccccCcc
Q 046488          327 RIGLDFSIGTGTFAARMREFNVTLVSAIINLGAPFNEMIALR-----GLVPLYITINQRVPFFDNTLDLIHTTRFLDGWI  401 (480)
Q Consensus       327 R~VLDVGCGtG~fAa~Lae~gV~Vv~vd~d~~~~~~~~iA~r-----glip~~~~~ae~LPFpd~SFDlV~ss~vL~h~~  401 (480)
                      .+|||+|||+|.++..+++++..+++++++.  .+......+     ..+.+..++.+.+|+++++||+|++..+++|+.
T Consensus        41 ~~vLDiG~G~G~~~~~l~~~~~~v~~vD~s~--~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~  118 (263)
T 2yqz_A           41 PVFLELGVGTGRIALPLIARGYRYIALDADA--AMLEVFRQKIAGVDRKVQVVQADARAIPLPDESVHGVIVVHLWHLVP  118 (263)
T ss_dssp             CEEEEETCTTSTTHHHHHTTTCEEEEEESCH--HHHHHHHHHTTTSCTTEEEEESCTTSCCSCTTCEEEEEEESCGGGCT
T ss_pred             CEEEEeCCcCCHHHHHHHHCCCEEEEEECCH--HHHHHHHHHhhccCCceEEEEcccccCCCCCCCeeEEEECCchhhcC
Confidence            4899999999999999999888898988762  333332222     123455667888999999999999999998887


Q ss_pred             ChhcHHHHHHHHHhcccCCcEEEEe
Q 046488          402 DFVLLDFILYDWDRVLRPGGLLWID  426 (480)
Q Consensus       402 d~~~l~~~L~EI~RVLKPGG~fiI~  426 (480)
                      +.   ..++.++.|+|||||++++.
T Consensus       119 ~~---~~~l~~~~~~L~pgG~l~~~  140 (263)
T 2yqz_A          119 DW---PKVLAEAIRVLKPGGALLEG  140 (263)
T ss_dssp             TH---HHHHHHHHHHEEEEEEEEEE
T ss_pred             CH---HHHHHHHHHHCCCCcEEEEE
Confidence            65   46999999999999999886

>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}

Probab=99.49  E-value=1.7e-13  Score=125.25  Aligned_cols=147  Identities=16%  Similarity=0.111  Sum_probs=99.4

Q ss_pred             CeEEEECCCCcHH-HHHHhhCCCEEEEEecCCChhHHHH----HHHhC-CCCeeeecccCCCCCCCccchheecccccCc
Q 046488          327 RIGLDFSIGTGTF-AARMREFNVTLVSAIINLGAPFNEM----IALRG-LVPLYITINQRVPFFDNTLDLIHTTRFLDGW  400 (480)
Q Consensus       327 R~VLDVGCGtG~f-Aa~Lae~gV~Vv~vd~d~~~~~~~~----iA~rg-lip~~~~~ae~LPFpd~SFDlV~ss~vL~h~  400 (480)
                      .+|||+|||+|.+ ...++..+..+++++++.  .+...    ....+ .+.+..+++..+|+++++||+|++..+++|+
T Consensus        25 ~~vLDiGcG~G~~~~~~~~~~~~~v~~vD~s~--~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~  102 (209)
T 2p8j_A           25 KTVLDCGAGGDLPPLSIFVEDGYKTYGIEISD--LQLKKAENFSRENNFKLNISKGDIRKLPFKDESMSFVYSYGTIFHM  102 (209)
T ss_dssp             SEEEEESCCSSSCTHHHHHHTTCEEEEEECCH--HHHHHHHHHHHHHTCCCCEEECCTTSCCSCTTCEEEEEECSCGGGS
T ss_pred             CEEEEECCCCCHHHHHHHHhCCCEEEEEECCH--HHHHHHHHHHHhcCCceEEEECchhhCCCCCCceeEEEEcChHHhC
Confidence            4899999999998 456666788888888753  22222    22222 3556667788899999999999999999888


Q ss_pred             cChhcHHHHHHHHHhcccCCcEEEEeeccCCh---------------------------hhHHHHHHHHHHcCceeeEEE
Q 046488          401 IDFVLLDFILYDWDRVLRPGGLLWIDSFFCAK---------------------------EDMNDYLEVFKMLKYKKHKWV  453 (480)
Q Consensus       401 ~d~~~l~~~L~EI~RVLKPGG~fiI~~f~~~~---------------------------edL~~~~~~l~~lGfkkl~W~  453 (480)
                      .. .....++.++.|+|||||++++..+....                           -..+++..+++.+||....-.
T Consensus       103 ~~-~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~~~~~  181 (209)
T 2p8j_A          103 RK-NDVKEAIDEIKRVLKPGGLACINFLTTKDERYNKGEKIGEGEFLQLERGEKVIHSYVSLEEADKYFKDMKVLFKEDR  181 (209)
T ss_dssp             CH-HHHHHHHHHHHHHEEEEEEEEEEEEETTSTTTTCSEEEETTEEEECC-CCCEEEEEECHHHHHHTTTTSEEEEEEEE
T ss_pred             CH-HHHHHHHHHHHHHcCCCcEEEEEEecccchhccchhhhccccceeccCCCceeEEecCHHHHHHHHhhcCceeeeee
Confidence            42 23467999999999999999987432110                           012456778888887655322


Q ss_pred             EeeccCC--CCcceeEEEEEEeCCC
Q 046488          454 VVPKRDK--DDREVFFSAVLEKPPR  476 (480)
Q Consensus       454 ~~~k~d~--~~~E~~lsav~qKP~~  476 (480)
                      .....+.  .....|...+.+|-.+
T Consensus       182 ~~~~~~~g~~~~~~f~~~~~~~~~~  206 (209)
T 2p8j_A          182 VVERINDGLKIKQGYVDYIAEKFSK  206 (209)
T ss_dssp             EEEEEETTEEEEEEEEEEEEECCCC
T ss_pred             eeehhhcCCcccceeeeeehhhhhh
Confidence            2222122  2246677778887544

>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*

Probab=99.49  E-value=1.3e-13  Score=134.51  Aligned_cols=97  Identities=10%  Similarity=0.053  Sum_probs=74.4

Q ss_pred             eEEEECCCCcHHHHHHhhCCCEEEEEecCCChhHHHHHHH---h------CCCCeeeecccCCCCCCCccchheeccccc
Q 046488          328 IGLDFSIGTGTFAARMREFNVTLVSAIINLGAPFNEMIAL---R------GLVPLYITINQRVPFFDNTLDLIHTTRFLD  398 (480)
Q Consensus       328 ~VLDVGCGtG~fAa~Lae~gV~Vv~vd~d~~~~~~~~iA~---r------glip~~~~~ae~LPFpd~SFDlV~ss~vL~  398 (480)
                      +|||||||+|.++..|++++..+++++++.  .+......   +      ..+.+..++...+|+ +++||+|+++..+.
T Consensus        85 ~vLDlGcG~G~~~~~l~~~~~~v~gvD~s~--~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~fD~v~~~~~~~  161 (299)
T 3g2m_A           85 PVLELAAGMGRLTFPFLDLGWEVTALELST--SVLAAFRKRLAEAPADVRDRCTLVQGDMSAFAL-DKRFGTVVISSGSI  161 (299)
T ss_dssp             CEEEETCTTTTTHHHHHTTTCCEEEEESCH--HHHHHHHHHHHTSCHHHHTTEEEEECBTTBCCC-SCCEEEEEECHHHH
T ss_pred             cEEEEeccCCHHHHHHHHcCCeEEEEECCH--HHHHHHHHHHhhcccccccceEEEeCchhcCCc-CCCcCEEEECCccc
Confidence            799999999999999999998899988762  23222211   1      234566777888888 89999999775555


Q ss_pred             CccChhcHHHHHHHHHhcccCCcEEEEee
Q 046488          399 GWIDFVLLDFILYDWDRVLRPGGLLWIDS  427 (480)
Q Consensus       399 h~~d~~~l~~~L~EI~RVLKPGG~fiI~~  427 (480)
                      |+.++..+..+|.++.|+|||||+|++..
T Consensus       162 ~~~~~~~~~~~l~~~~~~L~pgG~l~~~~  190 (299)
T 3g2m_A          162 NELDEADRRGLYASVREHLEPGGKFLLSL  190 (299)
T ss_dssp             TTSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ccCCHHHHHHHHHHHHHHcCCCcEEEEEe
Confidence            55555445789999999999999999863

>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*

Probab=99.49  E-value=9e-14  Score=131.25  Aligned_cols=150  Identities=15%  Similarity=0.121  Sum_probs=98.4

Q ss_pred             CCeEEEECCCCcHHHHHHhhCCC-EEEEEecCCChhHHHHHHH---hCC-------------------------------
Q 046488          326 IRIGLDFSIGTGTFAARMREFNV-TLVSAIINLGAPFNEMIAL---RGL-------------------------------  370 (480)
Q Consensus       326 iR~VLDVGCGtG~fAa~Lae~gV-~Vv~vd~d~~~~~~~~iA~---rgl-------------------------------  370 (480)
                      ..+|||+|||+|.++..+++.+. .+++++++.  .+...+..   ...                               
T Consensus        57 ~~~vLDlGcG~G~~~~~l~~~~~~~v~gvD~s~--~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  134 (265)
T 2i62_A           57 GELLIDIGSGPTIYQLLSACESFTEIIVSDYTD--QNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKLRR  134 (265)
T ss_dssp             EEEEEEESCTTCCGGGTTGGGTEEEEEEEESCH--HHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHHHH
T ss_pred             CCEEEEECCCccHHHHHHhhcccCeEEEecCCH--HHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHHhhh
Confidence            35899999999999999998877 788887652  33222211   111                               


Q ss_pred             -C-CeeeecccCC-CCCC---CccchheecccccCccCh-hcHHHHHHHHHhcccCCcEEEEeeccC-------------
Q 046488          371 -V-PLYITINQRV-PFFD---NTLDLIHTTRFLDGWIDF-VLLDFILYDWDRVLRPGGLLWIDSFFC-------------  430 (480)
Q Consensus       371 -i-p~~~~~ae~L-PFpd---~SFDlV~ss~vL~h~~d~-~~l~~~L~EI~RVLKPGG~fiI~~f~~-------------  430 (480)
                       + .+...+...+ ++++   ++||+|++..+++++... .....++.++.|+|||||+|++..+..             
T Consensus       135 ~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~~~~~~  214 (265)
T 2i62_A          135 AIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKPGGFLVMVDALKSSYYMIGEQKFSS  214 (265)
T ss_dssp             HEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEEETTEEEEC
T ss_pred             hheeEEEeeeccCCCCCccccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCCCCcEEEEEecCCCceEEcCCccccc
Confidence             3 3444444444 4466   899999999999844321 123679999999999999999875321             


Q ss_pred             ChhhHHHHHHHHHHcCceeeEEEEeecc-CC--CCcceeEEEEEEeCCCC
Q 046488          431 AKEDMNDYLEVFKMLKYKKHKWVVVPKR-DK--DDREVFFSAVLEKPPRP  477 (480)
Q Consensus       431 ~~edL~~~~~~l~~lGfkkl~W~~~~k~-d~--~~~E~~lsav~qKP~~~  477 (480)
                      ..-..+.+.++++..||+.+.+...... +.  ...+.++..+.+|+..+
T Consensus       215 ~~~~~~~~~~~l~~aGf~~~~~~~~~~~~~~~~~~~~~~~~~~a~K~~~~  264 (265)
T 2i62_A          215 LPLGWETVRDAVEEAGYTIEQFEVISQNYSSTTSNNEGLFSLVGRKPGRS  264 (265)
T ss_dssp             CCCCHHHHHHHHHHTTCEEEEEEEECCCCCTTTBCCCCEEEEEEECCC--
T ss_pred             cccCHHHHHHHHHHCCCEEEEEEEecccCCccccccceEEEEEecccccC
Confidence            1112356888999999998887765421 11  11233555678888653

>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*

Probab=99.49  E-value=2.7e-13  Score=132.34  Aligned_cols=129  Identities=13%  Similarity=0.132  Sum_probs=92.3

Q ss_pred             cCCCCCCCCeEEEECCCCcHHHHHHhhC-CCEEEEEecCCChhHHH----HHHHhCC---CCeeeecccCCCCCCCccch
Q 046488          319 LDIKPGEIRIGLDFSIGTGTFAARMREF-NVTLVSAIINLGAPFNE----MIALRGL---VPLYITINQRVPFFDNTLDL  390 (480)
Q Consensus       319 L~l~~g~iR~VLDVGCGtG~fAa~Lae~-gV~Vv~vd~d~~~~~~~----~iA~rgl---ip~~~~~ae~LPFpd~SFDl  390 (480)
                      +.+.++  .+|||||||+|.++..++++ |..+++++++.  .+..    .+...+.   +.+..++...+   +++||+
T Consensus        68 ~~~~~~--~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~--~~~~~a~~~~~~~~~~~~v~~~~~d~~~~---~~~fD~  140 (302)
T 3hem_A           68 LNLEPG--MTLLDIGCGWGSTMRHAVAEYDVNVIGLTLSE--NQYAHDKAMFDEVDSPRRKEVRIQGWEEF---DEPVDR  140 (302)
T ss_dssp             TCCCTT--CEEEEETCTTSHHHHHHHHHHCCEEEEEECCH--HHHHHHHHHHHHSCCSSCEEEEECCGGGC---CCCCSE
T ss_pred             cCCCCc--CEEEEeeccCcHHHHHHHHhCCCEEEEEECCH--HHHHHHHHHHHhcCCCCceEEEECCHHHc---CCCccE
Confidence            345555  48999999999999999987 88898888762  2222    2222232   33445555554   899999


Q ss_pred             heecccccCccCh------hcHHHHHHHHHhcccCCcEEEEeeccCChh-------------------------------
Q 046488          391 IHTTRFLDGWIDF------VLLDFILYDWDRVLRPGGLLWIDSFFCAKE-------------------------------  433 (480)
Q Consensus       391 V~ss~vL~h~~d~------~~l~~~L~EI~RVLKPGG~fiI~~f~~~~e-------------------------------  433 (480)
                      |++..+++|+.++      ..+..++.++.|+|||||++++..+.....                               
T Consensus       141 v~~~~~~~~~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~  220 (302)
T 3hem_A          141 IVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITIPDKEEAQELGLTSPMSLLRFIKFILTEIFPGGRL  220 (302)
T ss_dssp             EEEESCGGGTTCCSSCCCTTHHHHHHHHHHHSSCTTCEEEEEEEECCCHHHHHHHTCCCCHHHHHHHHHHHHHTCTTCCC
T ss_pred             EEEcchHHhcCccccccchhHHHHHHHHHHHhcCCCcEEEEEEEeccCccchhhccccccccccchHHHHHHhcCCCCCC
Confidence            9999999999664      334679999999999999999975433211                               


Q ss_pred             -hHHHHHHHHHHcCceeeEEEE
Q 046488          434 -DMNDYLEVFKMLKYKKHKWVV  454 (480)
Q Consensus       434 -dL~~~~~~l~~lGfkkl~W~~  454 (480)
                       ..+.+...++..||+.+.+..
T Consensus       221 ~s~~~~~~~l~~aGf~~~~~~~  242 (302)
T 3hem_A          221 PRISQVDYYSSNAGWKVERYHR  242 (302)
T ss_dssp             CCHHHHHHHHHHHTCEEEEEEE
T ss_pred             CCHHHHHHHHHhCCcEEEEEEe
Confidence             134567788889998776544

>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}

Probab=99.49  E-value=1.9e-13  Score=128.10  Aligned_cols=126  Identities=15%  Similarity=0.021  Sum_probs=92.1

Q ss_pred             CeEEEECCCCcHHHHHHhhCCCEEEEEecCCChhHHHHHHHh--C-----CCCeeeecccCCCCCCCccchheecccccC
Q 046488          327 RIGLDFSIGTGTFAARMREFNVTLVSAIINLGAPFNEMIALR--G-----LVPLYITINQRVPFFDNTLDLIHTTRFLDG  399 (480)
Q Consensus       327 R~VLDVGCGtG~fAa~Lae~gV~Vv~vd~d~~~~~~~~iA~r--g-----lip~~~~~ae~LPFpd~SFDlV~ss~vL~h  399 (480)
                      .+|||+|||+|.++..|++.+..+++++++.  .+...+..+  .     .+.+..++...++ ++++||+|++..++++
T Consensus        68 ~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~--~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-~~~~fD~v~~~~~l~~  144 (235)
T 3lcc_A           68 GRALVPGCGGGHDVVAMASPERFVVGLDISE--SALAKANETYGSSPKAEYFSFVKEDVFTWR-PTELFDLIFDYVFFCA  144 (235)
T ss_dssp             EEEEEETCTTCHHHHHHCBTTEEEEEECSCH--HHHHHHHHHHTTSGGGGGEEEECCCTTTCC-CSSCEEEEEEESSTTT
T ss_pred             CCEEEeCCCCCHHHHHHHhCCCeEEEEECCH--HHHHHHHHHhhccCCCcceEEEECchhcCC-CCCCeeEEEEChhhhc
Confidence            3899999999999999999888888888652  332222111  1     1344556666666 5679999999999988


Q ss_pred             ccChhcHHHHHHHHHhcccCCcEEEEeeccCCh--------hhHHHHHHHHHHcCceeeEEEEee
Q 046488          400 WIDFVLLDFILYDWDRVLRPGGLLWIDSFFCAK--------EDMNDYLEVFKMLKYKKHKWVVVP  456 (480)
Q Consensus       400 ~~d~~~l~~~L~EI~RVLKPGG~fiI~~f~~~~--------edL~~~~~~l~~lGfkkl~W~~~~  456 (480)
                      +.+. ....++.++.|+|||||++++..+....        -..+.+.++++..||+.+......
T Consensus       145 ~~~~-~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~  208 (235)
T 3lcc_A          145 IEPE-MRPAWAKSMYELLKPDGELITLMYPITDHVGGPPYKVDVSTFEEVLVPIGFKAVSVEENP  208 (235)
T ss_dssp             SCGG-GHHHHHHHHHHHEEEEEEEEEEECCCSCCCSCSSCCCCHHHHHHHHGGGTEEEEEEEECT
T ss_pred             CCHH-HHHHHHHHHHHHCCCCcEEEEEEecccccCCCCCccCCHHHHHHHHHHcCCeEEEEEecC
Confidence            8633 2367999999999999999987543221        124678889999999988766543

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}

Probab=99.48  E-value=1.1e-13  Score=135.67  Aligned_cols=140  Identities=12%  Similarity=0.047  Sum_probs=100.9

Q ss_pred             CeEEEECCCCcHHHHHHh--hC-CCEEEEEecCCChhHHHHHH----HhCC---CCeeeecccCCCCCCCccchheeccc
Q 046488          327 RIGLDFSIGTGTFAARMR--EF-NVTLVSAIINLGAPFNEMIA----LRGL---VPLYITINQRVPFFDNTLDLIHTTRF  396 (480)
Q Consensus       327 R~VLDVGCGtG~fAa~La--e~-gV~Vv~vd~d~~~~~~~~iA----~rgl---ip~~~~~ae~LPFpd~SFDlV~ss~v  396 (480)
                      .+|||||||+|.++..++  .. +..+++++++.  .+.....    ..+.   +.++.+++..+|++ ++||+|++..+
T Consensus       120 ~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~--~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~v~~~~~  196 (305)
T 3ocj_A          120 CVVASVPCGWMSELLALDYSACPGVQLVGIDYDP--EALDGATRLAAGHALAGQITLHRQDAWKLDTR-EGYDLLTSNGL  196 (305)
T ss_dssp             CEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCH--HHHHHHHHHHTTSTTGGGEEEEECCGGGCCCC-SCEEEEECCSS
T ss_pred             CEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCH--HHHHHHHHHHHhcCCCCceEEEECchhcCCcc-CCeEEEEECCh
Confidence            489999999999999985  22 67888888752  2322221    1121   44566778889988 99999999999


Q ss_pred             ccCccChhcHHHHHHHHHhcccCCcEEEEeeccCCh------------------------------------hhHHHHHH
Q 046488          397 LDGWIDFVLLDFILYDWDRVLRPGGLLWIDSFFCAK------------------------------------EDMNDYLE  440 (480)
Q Consensus       397 L~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~f~~~~------------------------------------edL~~~~~  440 (480)
                      ++|+.++.....++.++.|+|||||++++..+....                                    ...+.+.+
T Consensus       197 ~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (305)
T 3ocj_A          197 NIYEPDDARVTELYRRFWQALKPGGALVTSFLTPPPALSPDSPWDMQAIDPHDLQLQQLVFTRLIQPRWNALRTHAQTRA  276 (305)
T ss_dssp             GGGCCCHHHHHHHHHHHHHHEEEEEEEEEECCCCCTTTCTTCCCCGGGSCHHHHHHHHHHHHHTTCCSCCCCCCHHHHHH
T ss_pred             hhhcCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCCcccccccceeeccccchhhhhhhHHHHHHhhhhhccCCHHHHHH
Confidence            999987764456899999999999999987532210                                    12456788


Q ss_pred             HHHHcCceeeEEEEeeccCCCCcceeEEEEEEeCC
Q 046488          441 VFKMLKYKKHKWVVVPKRDKDDREVFFSAVLEKPP  475 (480)
Q Consensus       441 ~l~~lGfkkl~W~~~~k~d~~~~E~~lsav~qKP~  475 (480)
                      +++..||+.+.....    .  ...+..++.+||.
T Consensus       277 ~l~~aGF~~v~~~~~----~--~~~~~~v~a~Kpa  305 (305)
T 3ocj_A          277 QLEEAGFTDLRFEDD----R--ARLFPTVIARKPA  305 (305)
T ss_dssp             HHHHTTCEEEEEECC----T--TSSSCEEEEECCC
T ss_pred             HHHHCCCEEEEEEcc----c--CceeeEEEEecCC
Confidence            999999998776542    1  2344577788983

>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*

Probab=99.48  E-value=2.5e-13  Score=130.98  Aligned_cols=127  Identities=14%  Similarity=0.144  Sum_probs=89.5

Q ss_pred             CCCCCCCCeEEEECCCCcHHHHHHhh-CCCEEEEEecCCChhHHHHH----HHhC---CCCeeeecccCCCCCCCccchh
Q 046488          320 DIKPGEIRIGLDFSIGTGTFAARMRE-FNVTLVSAIINLGAPFNEMI----ALRG---LVPLYITINQRVPFFDNTLDLI  391 (480)
Q Consensus       320 ~l~~g~iR~VLDVGCGtG~fAa~Lae-~gV~Vv~vd~d~~~~~~~~i----A~rg---lip~~~~~ae~LPFpd~SFDlV  391 (480)
                      ++.++  .+|||||||+|.++..+++ .|..+++++++.  .+...+    ...+   .+.+..++.+.+|   ++||+|
T Consensus        61 ~~~~~--~~vLDiGcG~G~~~~~l~~~~~~~v~gvd~s~--~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~---~~fD~v  133 (287)
T 1kpg_A           61 GLQPG--MTLLDVGCGWGATMMRAVEKYDVNVVGLTLSK--NQANHVQQLVANSENLRSKRVLLAGWEQFD---EPVDRI  133 (287)
T ss_dssp             TCCTT--CEEEEETCTTSHHHHHHHHHHCCEEEEEESCH--HHHHHHHHHHHTCCCCSCEEEEESCGGGCC---CCCSEE
T ss_pred             CCCCc--CEEEEECCcccHHHHHHHHHcCCEEEEEECCH--HHHHHHHHHHHhcCCCCCeEEEECChhhCC---CCeeEE
Confidence            34444  4899999999999999984 588888888752  222211    1112   2334455566665   899999


Q ss_pred             eecccccCccChhcHHHHHHHHHhcccCCcEEEEeeccCCh--------------------------------hhHHHHH
Q 046488          392 HTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDSFFCAK--------------------------------EDMNDYL  439 (480)
Q Consensus       392 ~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~f~~~~--------------------------------edL~~~~  439 (480)
                      ++..+++|+.+.. ...++.++.|+|||||++++..+....                                ...+.+.
T Consensus       134 ~~~~~l~~~~~~~-~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~  212 (287)
T 1kpg_A          134 VSIGAFEHFGHER-YDAFFSLAHRLLPADGVMLLHTITGLHPKEIHERGLPMSFTFARFLKFIVTEIFPGGRLPSIPMVQ  212 (287)
T ss_dssp             EEESCGGGTCTTT-HHHHHHHHHHHSCTTCEEEEEEEEECCHHHHTTTTCSCHHHHHHHHHHHHHHTSTTCCCCCHHHHH
T ss_pred             EEeCchhhcChHH-HHHHHHHHHHhcCCCCEEEEEEecCCCccccccccccccccccchhhhHHheeCCCCCCCCHHHHH
Confidence            9999999985322 267999999999999999987533211                                0234577


Q ss_pred             HHHHHcCceeeEEEE
Q 046488          440 EVFKMLKYKKHKWVV  454 (480)
Q Consensus       440 ~~l~~lGfkkl~W~~  454 (480)
                      +++++.||+.+.+..
T Consensus       213 ~~l~~aGf~~~~~~~  227 (287)
T 1kpg_A          213 ECASANGFTVTRVQS  227 (287)
T ss_dssp             HHHHTTTCEEEEEEE
T ss_pred             HHHHhCCcEEEEEEe
Confidence            888999999887754

>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41

Probab=99.48  E-value=4.8e-13  Score=124.53  Aligned_cols=119  Identities=18%  Similarity=0.226  Sum_probs=90.7

Q ss_pred             CeEEEECCCCcHHHHHHhhCCCEEEEEecCCChhHHHHHHHhCCCCeeeecccCCCCCCCccchheecccccCccChhcH
Q 046488          327 RIGLDFSIGTGTFAARMREFNVTLVSAIINLGAPFNEMIALRGLVPLYITINQRVPFFDNTLDLIHTTRFLDGWIDFVLL  406 (480)
Q Consensus       327 R~VLDVGCGtG~fAa~Lae~gV~Vv~vd~d~~~~~~~~iA~rglip~~~~~ae~LPFpd~SFDlV~ss~vL~h~~d~~~l  406 (480)
                      .+|||+|||+|.++..+++.    ++++++  ..+ ...+.+..+.+..++.+.+|+++++||+|++..+++|+.+.   
T Consensus        49 ~~vLDiG~G~G~~~~~l~~~----~~vD~s--~~~-~~~a~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~---  118 (219)
T 1vlm_A           49 GRGVEIGVGTGRFAVPLKIK----IGVEPS--ERM-AEIARKRGVFVLKGTAENLPLKDESFDFALMVTTICFVDDP---  118 (219)
T ss_dssp             SCEEEETCTTSTTHHHHTCC----EEEESC--HHH-HHHHHHTTCEEEECBTTBCCSCTTCEEEEEEESCGGGSSCH---
T ss_pred             CcEEEeCCCCCHHHHHHHHH----hccCCC--HHH-HHHHHhcCCEEEEcccccCCCCCCCeeEEEEcchHhhccCH---
Confidence            47999999999999999876    555544  233 33444445666677788899999999999999999988765   


Q ss_pred             HHHHHHHHhcccCCcEEEEeeccCCh---------------------hhHHHHHHHHHHcCceeeEEEEe
Q 046488          407 DFILYDWDRVLRPGGLLWIDSFFCAK---------------------EDMNDYLEVFKMLKYKKHKWVVV  455 (480)
Q Consensus       407 ~~~L~EI~RVLKPGG~fiI~~f~~~~---------------------edL~~~~~~l~~lGfkkl~W~~~  455 (480)
                      ..++.++.|+|||||++++..+....                     -..+.+.+++++.||+.+.....
T Consensus       119 ~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~~~~~~~~  188 (219)
T 1vlm_A          119 ERALKEAYRILKKGGYLIVGIVDRESFLGREYEKNKEKSVFYKNARFFSTEELMDLMRKAGFEEFKVVQT  188 (219)
T ss_dssp             HHHHHHHHHHEEEEEEEEEEEECSSSHHHHHHHHTTTC-CCSTTCCCCCHHHHHHHHHHTTCEEEEEEEE
T ss_pred             HHHHHHHHHHcCCCcEEEEEEeCCccHHHHHHHHHhcCcchhcccccCCHHHHHHHHHHCCCeEEEEecc
Confidence            46999999999999999987432211                     12356888999999998765543

>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}

Probab=99.47  E-value=3.3e-13  Score=125.51  Aligned_cols=98  Identities=13%  Similarity=0.070  Sum_probs=75.4

Q ss_pred             CeEEEECCCCcHHHHHHhhCCCEEEEEecCCChhHHHHHHHh-CCCCeeeecccCCCCCCCccchheecc-cccCccChh
Q 046488          327 RIGLDFSIGTGTFAARMREFNVTLVSAIINLGAPFNEMIALR-GLVPLYITINQRVPFFDNTLDLIHTTR-FLDGWIDFV  404 (480)
Q Consensus       327 R~VLDVGCGtG~fAa~Lae~gV~Vv~vd~d~~~~~~~~iA~r-glip~~~~~ae~LPFpd~SFDlV~ss~-vL~h~~d~~  404 (480)
                      .+|||+|||+|.++..+++++..+++++++  ..+......+ ..+.+..++...+++ +++||+|+|.. +++|+.++.
T Consensus        42 ~~vLdiG~G~G~~~~~l~~~~~~v~~~D~s--~~~~~~a~~~~~~~~~~~~d~~~~~~-~~~~D~v~~~~~~~~~~~~~~  118 (239)
T 3bxo_A           42 SSLLDVACGTGTHLEHFTKEFGDTAGLELS--EDMLTHARKRLPDATLHQGDMRDFRL-GRKFSAVVSMFSSVGYLKTTE  118 (239)
T ss_dssp             CEEEEETCTTSHHHHHHHHHHSEEEEEESC--HHHHHHHHHHCTTCEEEECCTTTCCC-SSCEEEEEECTTGGGGCCSHH
T ss_pred             CeEEEecccCCHHHHHHHHhCCcEEEEeCC--HHHHHHHHHhCCCCEEEECCHHHccc-CCCCcEEEEcCchHhhcCCHH
Confidence            489999999999999999887788888765  2333332222 235556677777887 88999999654 888876655


Q ss_pred             cHHHHHHHHHhcccCCcEEEEee
Q 046488          405 LLDFILYDWDRVLRPGGLLWIDS  427 (480)
Q Consensus       405 ~l~~~L~EI~RVLKPGG~fiI~~  427 (480)
                      .+..++.++.|+|||||++++..
T Consensus       119 ~~~~~l~~~~~~L~pgG~l~~~~  141 (239)
T 3bxo_A          119 ELGAAVASFAEHLEPGGVVVVEP  141 (239)
T ss_dssp             HHHHHHHHHHHTEEEEEEEEECC
T ss_pred             HHHHHHHHHHHhcCCCeEEEEEe
Confidence            55789999999999999999974

>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A

Probab=99.47  E-value=2.5e-13  Score=131.94  Aligned_cols=105  Identities=12%  Similarity=0.053  Sum_probs=78.7

Q ss_pred             hHHHhcCCCCCCCCeEEEECCCCcHHHHHHhhC---CCEEEEEecCCChhHHHHHHHh-----C-CCCeeeecccCCCCC
Q 046488          314 LIPEVLDIKPGEIRIGLDFSIGTGTFAARMREF---NVTLVSAIINLGAPFNEMIALR-----G-LVPLYITINQRVPFF  384 (480)
Q Consensus       314 ~I~~vL~l~~g~iR~VLDVGCGtG~fAa~Lae~---gV~Vv~vd~d~~~~~~~~iA~r-----g-lip~~~~~ae~LPFp  384 (480)
                      .+..++.+.++  .+|||||||+|.++..+++.   +..+++++++.   .+...+.+     + .+.+..++++.+|+ 
T Consensus        13 ~~~~~~~~~~~--~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~---~~~~~a~~~~~~~~~~v~~~~~d~~~~~~-   86 (284)
T 3gu3_A           13 LVNTVWKITKP--VHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGE---TLLAEARELFRLLPYDSEFLEGDATEIEL-   86 (284)
T ss_dssp             HHHTTSCCCSC--CEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCH---HHHHHHHHHHHSSSSEEEEEESCTTTCCC-
T ss_pred             HHHHHhccCCC--CeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCH---HHHHHHHHHHHhcCCceEEEEcchhhcCc-
Confidence            34444455444  48999999999999999987   57888888762   22222222     1 23445667788888 


Q ss_pred             CCccchheecccccCccChhcHHHHHHHHHhcccCCcEEEEee
Q 046488          385 DNTLDLIHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDS  427 (480)
Q Consensus       385 d~SFDlV~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~  427 (480)
                      +++||+|++..+++|+.+.   ..++.++.|+|||||++++..
T Consensus        87 ~~~fD~v~~~~~l~~~~~~---~~~l~~~~~~LkpgG~l~~~~  126 (284)
T 3gu3_A           87 NDKYDIAICHAFLLHMTTP---ETMLQKMIHSVKKGGKIICFE  126 (284)
T ss_dssp             SSCEEEEEEESCGGGCSSH---HHHHHHHHHTEEEEEEEEEEE
T ss_pred             CCCeeEEEECChhhcCCCH---HHHHHHHHHHcCCCCEEEEEe
Confidence            5799999999999998776   469999999999999999764

>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}

Probab=99.47  E-value=5.3e-13  Score=124.36  Aligned_cols=96  Identities=17%  Similarity=0.143  Sum_probs=73.2

Q ss_pred             CeEEEECCCCcHHHHHHhhCCCEEEEEecCCChhHHHHH----HHhC-CCCeeeecccCCCCCCCccchheecc-cccCc
Q 046488          327 RIGLDFSIGTGTFAARMREFNVTLVSAIINLGAPFNEMI----ALRG-LVPLYITINQRVPFFDNTLDLIHTTR-FLDGW  400 (480)
Q Consensus       327 R~VLDVGCGtG~fAa~Lae~gV~Vv~vd~d~~~~~~~~i----A~rg-lip~~~~~ae~LPFpd~SFDlV~ss~-vL~h~  400 (480)
                      .+|||+|||+|.++..+++. ..+++++++.  .+...+    ...+ .+.+..++...+|++ ++||+|++.. +++|+
T Consensus        35 ~~vLdiG~G~G~~~~~l~~~-~~v~~vD~s~--~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~-~~fD~v~~~~~~~~~~  110 (243)
T 3d2l_A           35 KRIADIGCGTGTATLLLADH-YEVTGVDLSE--EMLEIAQEKAMETNRHVDFWVQDMRELELP-EPVDAITILCDSLNYL  110 (243)
T ss_dssp             CEEEEESCTTCHHHHHHTTT-SEEEEEESCH--HHHHHHHHHHHHTTCCCEEEECCGGGCCCS-SCEEEEEECTTGGGGC
T ss_pred             CeEEEecCCCCHHHHHHhhC-CeEEEEECCH--HHHHHHHHhhhhcCCceEEEEcChhhcCCC-CCcCEEEEeCCchhhc
Confidence            48999999999999999988 7888888652  222221    1122 244556667778876 8999999986 88888


Q ss_pred             cChhcHHHHHHHHHhcccCCcEEEEe
Q 046488          401 IDFVLLDFILYDWDRVLRPGGLLWID  426 (480)
Q Consensus       401 ~d~~~l~~~L~EI~RVLKPGG~fiI~  426 (480)
                      .+......++.++.|+|||||++++.
T Consensus       111 ~~~~~~~~~l~~~~~~L~pgG~l~~~  136 (243)
T 3d2l_A          111 QTEADVKQTFDSAARLLTDGGKLLFD  136 (243)
T ss_dssp             CSHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             CCHHHHHHHHHHHHHhcCCCeEEEEE
Confidence            65555578999999999999999873

>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*

Probab=99.47  E-value=2.3e-13  Score=132.18  Aligned_cols=124  Identities=12%  Similarity=-0.091  Sum_probs=89.0

Q ss_pred             CeEEEECCCCcHHHHHHhhCCCEEEEEecCCChhHHHHHHHhC-----------------------CCCeeeecccCCCC
Q 046488          327 RIGLDFSIGTGTFAARMREFNVTLVSAIINLGAPFNEMIALRG-----------------------LVPLYITINQRVPF  383 (480)
Q Consensus       327 R~VLDVGCGtG~fAa~Lae~gV~Vv~vd~d~~~~~~~~iA~rg-----------------------lip~~~~~ae~LPF  383 (480)
                      .+|||+|||+|..+..|+++|..|+++|++  ..+...+.++.                       .+.+..+++..+++
T Consensus        70 ~~vLD~GCG~G~~~~~La~~G~~V~gvD~S--~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~~l~~  147 (252)
T 2gb4_A           70 LRVFFPLCGKAIEMKWFADRGHTVVGVEIS--EIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIFDLPR  147 (252)
T ss_dssp             CEEEETTCTTCTHHHHHHHTTCEEEEECSC--HHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTTTGGG
T ss_pred             CeEEEeCCCCcHHHHHHHHCCCeEEEEECC--HHHHHHHHHhcccccccccccccccccccccCCCceEEEECccccCCc
Confidence            489999999999999999999999998865  24433332221                       23445677888888


Q ss_pred             CC-CccchheecccccCccChhcHHHHHHHHHhcccCCcEEEEeeccCCh---------hhHHHHHHHHHHcCceeeEEE
Q 046488          384 FD-NTLDLIHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDSFFCAK---------EDMNDYLEVFKMLKYKKHKWV  453 (480)
Q Consensus       384 pd-~SFDlV~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~f~~~~---------edL~~~~~~l~~lGfkkl~W~  453 (480)
                      .+ ++||+|++..+++++++.. ...++.++.|+|||||+|++..+....         -..+++..+++. +|+...+.
T Consensus       148 ~~~~~FD~V~~~~~l~~l~~~~-~~~~l~~~~~~LkpGG~l~l~~~~~~~~~~~g~~~~~~~~el~~~l~~-~f~v~~~~  225 (252)
T 2gb4_A          148 ANIGKFDRIWDRGALVAINPGD-HDRYADIILSLLRKEFQYLVAVLSYDPTKHAGPPFYVPSAELKRLFGT-KCSMQCLE  225 (252)
T ss_dssp             GCCCCEEEEEESSSTTTSCGGG-HHHHHHHHHHTEEEEEEEEEEEEECCTTSCCCSSCCCCHHHHHHHHTT-TEEEEEEE
T ss_pred             ccCCCEEEEEEhhhhhhCCHHH-HHHHHHHHHHHcCCCeEEEEEEEecCCccCCCCCCCCCHHHHHHHhhC-CeEEEEEe
Confidence            75 8999999988888876433 367999999999999999754321110         123456677766 58776665


Q ss_pred             E
Q 046488          454 V  454 (480)
Q Consensus       454 ~  454 (480)
                      .
T Consensus       226 ~  226 (252)
T 2gb4_A          226 E  226 (252)
T ss_dssp             E
T ss_pred             c
Confidence            4

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}

Probab=99.46  E-value=2.1e-13  Score=130.48  Aligned_cols=122  Identities=17%  Similarity=0.151  Sum_probs=90.1

Q ss_pred             CeEEEECCCCcHHHHHHhhC--CCEEEEEecCCChhHHH----HHHHhCC--CCeeeecccCCCCCCCccchheeccccc
Q 046488          327 RIGLDFSIGTGTFAARMREF--NVTLVSAIINLGAPFNE----MIALRGL--VPLYITINQRVPFFDNTLDLIHTTRFLD  398 (480)
Q Consensus       327 R~VLDVGCGtG~fAa~Lae~--gV~Vv~vd~d~~~~~~~----~iA~rgl--ip~~~~~ae~LPFpd~SFDlV~ss~vL~  398 (480)
                      .+|||||||+|.++..+++.  +..+++++++.  .+..    .+...+.  +.+..++...+|+++++||+|++..+++
T Consensus        39 ~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~--~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~  116 (276)
T 3mgg_A           39 AKVLEAGCGIGAQTVILAKNNPDAEITSIDISP--ESLEKARENTEKNGIKNVKFLQANIFSLPFEDSSFDHIFVCFVLE  116 (276)
T ss_dssp             CEEEETTCTTSHHHHHHHHHCTTSEEEEEESCH--HHHHHHHHHHHHTTCCSEEEEECCGGGCCSCTTCEEEEEEESCGG
T ss_pred             CeEEEecCCCCHHHHHHHHhCCCCEEEEEECCH--HHHHHHHHHHHHcCCCCcEEEEcccccCCCCCCCeeEEEEechhh
Confidence            48999999999999999987  67888888762  2222    2222232  3445566888999999999999999999


Q ss_pred             CccChhcHHHHHHHHHhcccCCcEEEEeecc-------CChhh---------------------HHHHHHHHHHcCceee
Q 046488          399 GWIDFVLLDFILYDWDRVLRPGGLLWIDSFF-------CAKED---------------------MNDYLEVFKMLKYKKH  450 (480)
Q Consensus       399 h~~d~~~l~~~L~EI~RVLKPGG~fiI~~f~-------~~~ed---------------------L~~~~~~l~~lGfkkl  450 (480)
                      |+.+.   ..++.++.|+|||||++++....       .....                     ...+..++++.||+.+
T Consensus       117 ~~~~~---~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~v  193 (276)
T 3mgg_A          117 HLQSP---EEALKSLKKVLKPGGTITVIEGDHGSCYFHPEGKKAIEAWNCLIRVQAYMKGNSLVGRQIYPLLQESGFEKI  193 (276)
T ss_dssp             GCSCH---HHHHHHHHHHEEEEEEEEEEEECGGGCEEESCCHHHHHHHHHHHHHHHHTTCCTTGGGGHHHHHHHTTCEEE
T ss_pred             hcCCH---HHHHHHHHHHcCCCcEEEEEEcCCCCceECCCcHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHCCCCeE
Confidence            99876   46999999999999999986321       11100                     1235678999999877


Q ss_pred             EEE
Q 046488          451 KWV  453 (480)
Q Consensus       451 ~W~  453 (480)
                      ...
T Consensus       194 ~~~  196 (276)
T 3mgg_A          194 RVE  196 (276)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            654

>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A

Probab=99.46  E-value=4.3e-13  Score=124.17  Aligned_cols=96  Identities=11%  Similarity=-0.036  Sum_probs=74.0

Q ss_pred             CeEEEECCCCcHHHHHHhhCC--CEEEEEecCCChhHHHHHHHhC------------CCCeeeecccCCCCCCCccchhe
Q 046488          327 RIGLDFSIGTGTFAARMREFN--VTLVSAIINLGAPFNEMIALRG------------LVPLYITINQRVPFFDNTLDLIH  392 (480)
Q Consensus       327 R~VLDVGCGtG~fAa~Lae~g--V~Vv~vd~d~~~~~~~~iA~rg------------lip~~~~~ae~LPFpd~SFDlV~  392 (480)
                      .+|||+|||+|.++..+++++  ..+++++++.  .+.. .+.+.            .+.+..++...+++++++||+|+
T Consensus        31 ~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~--~~~~-~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~  107 (217)
T 3jwh_A           31 RRVIDLGCGQGNLLKILLKDSFFEQITGVDVSY--RSLE-IAQERLDRLRLPRNQWERLQLIQGALTYQDKRFHGYDAAT  107 (217)
T ss_dssp             CEEEEETCTTCHHHHHHHHCTTCSEEEEEESCH--HHHH-HHHHHHTTCCCCHHHHTTEEEEECCTTSCCGGGCSCSEEE
T ss_pred             CEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCH--HHHH-HHHHHHHHhcCCcccCcceEEEeCCcccccccCCCcCEEe
Confidence            489999999999999999875  5888888752  3322 22221            24455566777788889999999


Q ss_pred             ecccccCccChhcHHHHHHHHHhcccCCcEEEEe
Q 046488          393 TTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWID  426 (480)
Q Consensus       393 ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~  426 (480)
                      +..+++|+.++. +..++.++.|+|||||++++.
T Consensus       108 ~~~~l~~~~~~~-~~~~l~~~~~~LkpgG~li~~  140 (217)
T 3jwh_A          108 VIEVIEHLDLSR-LGAFERVLFEFAQPKIVIVTT  140 (217)
T ss_dssp             EESCGGGCCHHH-HHHHHHHHHTTTCCSEEEEEE
T ss_pred             eHHHHHcCCHHH-HHHHHHHHHHHcCCCEEEEEc
Confidence            999999986543 367999999999999987775

>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*

Probab=99.45  E-value=2.5e-13  Score=138.83  Aligned_cols=124  Identities=10%  Similarity=0.015  Sum_probs=95.2

Q ss_pred             CCeEEEECCCCcHHHHHHhhCCCEEEEEecCCChhHHHHHHHhCCCCeee-----ecccCCCCCCCccchheecccccCc
Q 046488          326 IRIGLDFSIGTGTFAARMREFNVTLVSAIINLGAPFNEMIALRGLVPLYI-----TINQRVPFFDNTLDLIHTTRFLDGW  400 (480)
Q Consensus       326 iR~VLDVGCGtG~fAa~Lae~gV~Vv~vd~d~~~~~~~~iA~rglip~~~-----~~ae~LPFpd~SFDlV~ss~vL~h~  400 (480)
                      ..+|||||||+|.++..|++++..+++++++   +.....|.+..++...     +..+.+|+++++||+|++..+++|+
T Consensus       108 ~~~VLDiGcG~G~~~~~l~~~g~~v~gvD~s---~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~fD~I~~~~vl~h~  184 (416)
T 4e2x_A          108 DPFIVEIGCNDGIMLRTIQEAGVRHLGFEPS---SGVAAKAREKGIRVRTDFFEKATADDVRRTEGPANVIYAANTLCHI  184 (416)
T ss_dssp             SCEEEEETCTTTTTHHHHHHTTCEEEEECCC---HHHHHHHHTTTCCEECSCCSHHHHHHHHHHHCCEEEEEEESCGGGC
T ss_pred             CCEEEEecCCCCHHHHHHHHcCCcEEEECCC---HHHHHHHHHcCCCcceeeechhhHhhcccCCCCEEEEEECChHHhc
Confidence            3489999999999999999999999998875   3334455555444332     3366788999999999999999999


Q ss_pred             cChhcHHHHHHHHHhcccCCcEEEEeecc-----------CC-h-----hhHHHHHHHHHHcCceeeEEEEe
Q 046488          401 IDFVLLDFILYDWDRVLRPGGLLWIDSFF-----------CA-K-----EDMNDYLEVFKMLKYKKHKWVVV  455 (480)
Q Consensus       401 ~d~~~l~~~L~EI~RVLKPGG~fiI~~f~-----------~~-~-----edL~~~~~~l~~lGfkkl~W~~~  455 (480)
                      .+.   ..++.++.|+|||||++++....           .. .     -..+.+..++++.||+.+.....
T Consensus       185 ~d~---~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll~~aGf~~~~~~~~  253 (416)
T 4e2x_A          185 PYV---QSVLEGVDALLAPDGVFVFEDPYLGDIVAKTSFDQIFDEHFFLFSATSVQGMAQRCGFELVDVQRL  253 (416)
T ss_dssp             TTH---HHHHHHHHHHEEEEEEEEEEEECHHHHHHHTCGGGCSTTCCEECCHHHHHHHHHHTTEEEEEEEEE
T ss_pred             CCH---HHHHHHHHHHcCCCeEEEEEeCChHHhhhhcchhhhhhhhhhcCCHHHHHHHHHHcCCEEEEEEEc
Confidence            866   56999999999999999986311           00 0     12356888999999998765553

>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A

Probab=99.45  E-value=3.4e-13  Score=137.48  Aligned_cols=121  Identities=16%  Similarity=0.208  Sum_probs=90.9

Q ss_pred             CeEEEECCCCcHHHHHHhhC---CCEEEEEecCCChhHHHHHHHh----------C-----CCCeeeecccCC------C
Q 046488          327 RIGLDFSIGTGTFAARMREF---NVTLVSAIINLGAPFNEMIALR----------G-----LVPLYITINQRV------P  382 (480)
Q Consensus       327 R~VLDVGCGtG~fAa~Lae~---gV~Vv~vd~d~~~~~~~~iA~r----------g-----lip~~~~~ae~L------P  382 (480)
                      .+|||+|||+|.++..|++.   +..+++++++.  .+ ...+.+          |     .+.+..++++.+      |
T Consensus        85 ~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~--~~-l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~~  161 (383)
T 4fsd_A           85 ATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLD--NQ-LEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPEG  161 (383)
T ss_dssp             CEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCH--HH-HHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSCC
T ss_pred             CEEEEecCccCHHHHHHHHHhCCCCEEEEEECCH--HH-HHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccCC
Confidence            48999999999999998874   56888888752  23 222222          2     344556666666      9


Q ss_pred             CCCCccchheecccccCccChhcHHHHHHHHHhcccCCcEEEEeeccCCh--------------------hhHHHHHHHH
Q 046488          383 FFDNTLDLIHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDSFFCAK--------------------EDMNDYLEVF  442 (480)
Q Consensus       383 Fpd~SFDlV~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~f~~~~--------------------edL~~~~~~l  442 (480)
                      +++++||+|++..+++++.+.   ..+|.++.|+|||||+|++..+....                    -..+.+.+++
T Consensus       162 ~~~~~fD~V~~~~~l~~~~d~---~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll  238 (383)
T 4fsd_A          162 VPDSSVDIVISNCVCNLSTNK---LALFKEIHRVLRDGGELYFSDVYADRRLSEAAQQDPILYGECLGGALYLEDFRRLV  238 (383)
T ss_dssp             CCTTCEEEEEEESCGGGCSCH---HHHHHHHHHHEEEEEEEEEEEEEESSCCCHHHHHCHHHHHTTCTTCCBHHHHHHHH
T ss_pred             CCCCCEEEEEEccchhcCCCH---HHHHHHHHHHcCCCCEEEEEEeccccccCHhHhhhHHHhhcccccCCCHHHHHHHH
Confidence            999999999999999988775   57999999999999999997543221                    1125688899


Q ss_pred             HHcCceeeEEE
Q 046488          443 KMLKYKKHKWV  453 (480)
Q Consensus       443 ~~lGfkkl~W~  453 (480)
                      ++.||+.+.+.
T Consensus       239 ~~aGF~~v~~~  249 (383)
T 4fsd_A          239 AEAGFRDVRLV  249 (383)
T ss_dssp             HHTTCCCEEEE
T ss_pred             HHCCCceEEEE
Confidence            99999876543

>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A

Probab=99.45  E-value=7.2e-13  Score=120.89  Aligned_cols=121  Identities=10%  Similarity=-0.006  Sum_probs=85.3

Q ss_pred             eEEEECCCCcHHHHHHhhCCCEEEEEecCCChhHHHH----HHHhC-CCCeeeecccCCCCCCCccchheecccccCccC
Q 046488          328 IGLDFSIGTGTFAARMREFNVTLVSAIINLGAPFNEM----IALRG-LVPLYITINQRVPFFDNTLDLIHTTRFLDGWID  402 (480)
Q Consensus       328 ~VLDVGCGtG~fAa~Lae~gV~Vv~vd~d~~~~~~~~----iA~rg-lip~~~~~ae~LPFpd~SFDlV~ss~vL~h~~d  402 (480)
                      +|||+|||+|.++..+++.+..+++++++.  .+...    ....+ .+.+..+++..+|+++++||+|++..  .|+. 
T Consensus        32 ~vLdiGcG~G~~~~~l~~~~~~v~~vD~s~--~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~--~~~~-  106 (202)
T 2kw5_A           32 KILCLAEGEGRNACFLASLGYEVTAVDQSS--VGLAKAKQLAQEKGVKITTVQSNLADFDIVADAWEGIVSIF--CHLP-  106 (202)
T ss_dssp             EEEECCCSCTHHHHHHHTTTCEEEEECSSH--HHHHHHHHHHHHHTCCEEEECCBTTTBSCCTTTCSEEEEEC--CCCC-
T ss_pred             CEEEECCCCCHhHHHHHhCCCeEEEEECCH--HHHHHHHHHHHhcCCceEEEEcChhhcCCCcCCccEEEEEh--hcCC-
Confidence            799999999999999999988998888652  22222    22222 23445566778899999999999853  4553 


Q ss_pred             hhcHHHHHHHHHhcccCCcEEEEeeccCChh--------------hHHHHHHHHHHcCceeeEEEEe
Q 046488          403 FVLLDFILYDWDRVLRPGGLLWIDSFFCAKE--------------DMNDYLEVFKMLKYKKHKWVVV  455 (480)
Q Consensus       403 ~~~l~~~L~EI~RVLKPGG~fiI~~f~~~~e--------------dL~~~~~~l~~lGfkkl~W~~~  455 (480)
                      ......++.++.|+|||||++++..+.....              ..+.+..+++  ||+.+.....
T Consensus       107 ~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~--Gf~v~~~~~~  171 (202)
T 2kw5_A          107 SSLRQQLYPKVYQGLKPGGVFILEGFAPEQLQYNTGGPKDLDLLPKLETLQSELP--SLNWLIANNL  171 (202)
T ss_dssp             HHHHHHHHHHHHTTCCSSEEEEEEEECTTTGGGTSCCSSSGGGCCCHHHHHHHCS--SSCEEEEEEE
T ss_pred             HHHHHHHHHHHHHhcCCCcEEEEEEeccccccCCCCCCCcceeecCHHHHHHHhc--CceEEEEEEE
Confidence            2234679999999999999999975322111              1345667776  9987765443

>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}

Probab=99.44  E-value=5.7e-13  Score=125.60  Aligned_cols=95  Identities=16%  Similarity=0.050  Sum_probs=75.9

Q ss_pred             CeEEEECCCCcHHHHHHhhC--CCEEEEEecCCChhHHHHHHHh-CCCCeeeecccCCCCCCCccchheecccccCccCh
Q 046488          327 RIGLDFSIGTGTFAARMREF--NVTLVSAIINLGAPFNEMIALR-GLVPLYITINQRVPFFDNTLDLIHTTRFLDGWIDF  403 (480)
Q Consensus       327 R~VLDVGCGtG~fAa~Lae~--gV~Vv~vd~d~~~~~~~~iA~r-glip~~~~~ae~LPFpd~SFDlV~ss~vL~h~~d~  403 (480)
                      .+|||+|||+|.++..++++  +..+++++++.  .+......+ ..+.+..++.+.+| ++++||+|++..+++|+.+.
T Consensus        35 ~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~--~~~~~a~~~~~~~~~~~~d~~~~~-~~~~fD~v~~~~~l~~~~~~  111 (259)
T 2p35_A           35 LNGYDLGCGPGNSTELLTDRYGVNVITGIDSDD--DMLEKAADRLPNTNFGKADLATWK-PAQKADLLYANAVFQWVPDH  111 (259)
T ss_dssp             SSEEEETCTTTHHHHHHHHHHCTTSEEEEESCH--HHHHHHHHHSTTSEEEECCTTTCC-CSSCEEEEEEESCGGGSTTH
T ss_pred             CEEEEecCcCCHHHHHHHHhCCCCEEEEEECCH--HHHHHHHHhCCCcEEEECChhhcC-ccCCcCEEEEeCchhhCCCH
Confidence            47999999999999999987  77888888652  333333222 23556667788888 89999999999999888665


Q ss_pred             hcHHHHHHHHHhcccCCcEEEEee
Q 046488          404 VLLDFILYDWDRVLRPGGLLWIDS  427 (480)
Q Consensus       404 ~~l~~~L~EI~RVLKPGG~fiI~~  427 (480)
                         ..++.++.|+|||||++++..
T Consensus       112 ---~~~l~~~~~~L~pgG~l~~~~  132 (259)
T 2p35_A          112 ---LAVLSQLMDQLESGGVLAVQM  132 (259)
T ss_dssp             ---HHHHHHHGGGEEEEEEEEEEE
T ss_pred             ---HHHHHHHHHhcCCCeEEEEEe
Confidence               569999999999999999874

>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}

Probab=99.41  E-value=5.6e-13  Score=122.40  Aligned_cols=96  Identities=22%  Similarity=0.237  Sum_probs=75.4

Q ss_pred             CCeEEEECCCCcHHHHHHhhCCC-EEEEEecCCChhHHHHHHHh-CCCCeeeecccCCCCCCCccchheecccccCccCh
Q 046488          326 IRIGLDFSIGTGTFAARMREFNV-TLVSAIINLGAPFNEMIALR-GLVPLYITINQRVPFFDNTLDLIHTTRFLDGWIDF  403 (480)
Q Consensus       326 iR~VLDVGCGtG~fAa~Lae~gV-~Vv~vd~d~~~~~~~~iA~r-glip~~~~~ae~LPFpd~SFDlV~ss~vL~h~~d~  403 (480)
                      ..+|||+|||+|.++..+   +. .+++++++  ..+......+ ..+.+..++.+.+|+++++||+|++..+++|+.+.
T Consensus        37 ~~~vLdiG~G~G~~~~~l---~~~~v~~vD~s--~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~  111 (211)
T 2gs9_A           37 GESLLEVGAGTGYWLRRL---PYPQKVGVEPS--EAMLAVGRRRAPEATWVRAWGEALPFPGESFDVVLLFTTLEFVEDV  111 (211)
T ss_dssp             CSEEEEETCTTCHHHHHC---CCSEEEEECCC--HHHHHHHHHHCTTSEEECCCTTSCCSCSSCEEEEEEESCTTTCSCH
T ss_pred             CCeEEEECCCCCHhHHhC---CCCeEEEEeCC--HHHHHHHHHhCCCcEEEEcccccCCCCCCcEEEEEEcChhhhcCCH
Confidence            358999999999999988   56 78887765  2333333222 24556667788899999999999999999998765


Q ss_pred             hcHHHHHHHHHhcccCCcEEEEeecc
Q 046488          404 VLLDFILYDWDRVLRPGGLLWIDSFF  429 (480)
Q Consensus       404 ~~l~~~L~EI~RVLKPGG~fiI~~f~  429 (480)
                         ..++.++.|+|||||++++..+.
T Consensus       112 ---~~~l~~~~~~L~pgG~l~i~~~~  134 (211)
T 2gs9_A          112 ---ERVLLEARRVLRPGGALVVGVLE  134 (211)
T ss_dssp             ---HHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             ---HHHHHHHHHHcCCCCEEEEEecC
Confidence               46999999999999999997543

>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*

Probab=99.41  E-value=1.3e-12  Score=128.17  Aligned_cols=122  Identities=12%  Similarity=0.041  Sum_probs=87.7

Q ss_pred             CeEEEECCCCcHHHHHHhhC-CCEEEEEecCCChhHHHHH----HHhCC---CCeeeecccCCCCCCCccchheeccccc
Q 046488          327 RIGLDFSIGTGTFAARMREF-NVTLVSAIINLGAPFNEMI----ALRGL---VPLYITINQRVPFFDNTLDLIHTTRFLD  398 (480)
Q Consensus       327 R~VLDVGCGtG~fAa~Lae~-gV~Vv~vd~d~~~~~~~~i----A~rgl---ip~~~~~ae~LPFpd~SFDlV~ss~vL~  398 (480)
                      .+|||||||+|.++..+++. |..+++++++.  .+....    +..+.   +.+..++.+.+|   ++||+|++..+++
T Consensus        92 ~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~--~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~---~~fD~v~~~~~l~  166 (318)
T 2fk8_A           92 MTLLDIGCGWGTTMRRAVERFDVNVIGLTLSK--NQHARCEQVLASIDTNRSRQVLLQGWEDFA---EPVDRIVSIEAFE  166 (318)
T ss_dssp             CEEEEESCTTSHHHHHHHHHHCCEEEEEESCH--HHHHHHHHHHHTSCCSSCEEEEESCGGGCC---CCCSEEEEESCGG
T ss_pred             CEEEEEcccchHHHHHHHHHCCCEEEEEECCH--HHHHHHHHHHHhcCCCCceEEEECChHHCC---CCcCEEEEeChHH
Confidence            48999999999999999987 88999988762  222221    11122   334455566664   8999999999999


Q ss_pred             CccChhcHHHHHHHHHhcccCCcEEEEeeccCChh--------------------------------hHHHHHHHHHHcC
Q 046488          399 GWIDFVLLDFILYDWDRVLRPGGLLWIDSFFCAKE--------------------------------DMNDYLEVFKMLK  446 (480)
Q Consensus       399 h~~d~~~l~~~L~EI~RVLKPGG~fiI~~f~~~~e--------------------------------dL~~~~~~l~~lG  446 (480)
                      |+.+.. ...++.++.|+|||||++++..+.....                                ..+.+.++++..|
T Consensus       167 ~~~~~~-~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~aG  245 (318)
T 2fk8_A          167 HFGHEN-YDDFFKRCFNIMPADGRMTVQSSVSYHPYEMAARGKKLSFETARFIKFIVTEIFPGGRLPSTEMMVEHGEKAG  245 (318)
T ss_dssp             GTCGGG-HHHHHHHHHHHSCTTCEEEEEEEECCCHHHHHTTCHHHHHHHHHHHHHHHHHTSTTCCCCCHHHHHHHHHHTT
T ss_pred             hcCHHH-HHHHHHHHHHhcCCCcEEEEEEeccCCchhhhhccccccccccchhhHHHHhcCCCCcCCCHHHHHHHHHhCC
Confidence            885322 3679999999999999999875433210                                1345677888899


Q ss_pred             ceeeEEEE
Q 046488          447 YKKHKWVV  454 (480)
Q Consensus       447 fkkl~W~~  454 (480)
                      |+.+.+..
T Consensus       246 f~~~~~~~  253 (318)
T 2fk8_A          246 FTVPEPLS  253 (318)
T ss_dssp             CBCCCCEE
T ss_pred             CEEEEEEe
Confidence            98776544

>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=99.41  E-value=4.2e-13  Score=126.51  Aligned_cols=126  Identities=17%  Similarity=0.102  Sum_probs=82.5

Q ss_pred             CeEEEECCCCcHHHHHHhhCCC-EEEEEecCCChhHHHHHHHh----C-CCCeeeecccCC--CCCCCccchhee-cccc
Q 046488          327 RIGLDFSIGTGTFAARMREFNV-TLVSAIINLGAPFNEMIALR----G-LVPLYITINQRV--PFFDNTLDLIHT-TRFL  397 (480)
Q Consensus       327 R~VLDVGCGtG~fAa~Lae~gV-~Vv~vd~d~~~~~~~~iA~r----g-lip~~~~~ae~L--PFpd~SFDlV~s-s~vL  397 (480)
                      .+|||||||+|.++..+++.+. .+++++++  ..+...+.++    + .+.+..++.+.+  |+++++||+|++ .+.+
T Consensus        62 ~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s--~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~d~~~~  139 (236)
T 1zx0_A           62 GRVLEVGFGMAIAASKVQEAPIDEHWIIECN--DGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTYPL  139 (236)
T ss_dssp             EEEEEECCTTSHHHHHHHTSCEEEEEEEECC--HHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCCCC
T ss_pred             CeEEEEeccCCHHHHHHHhcCCCeEEEEcCC--HHHHHHHHHHHHhcCCCeEEEecCHHHhhcccCCCceEEEEECCccc
Confidence            4899999999999999988655 67777765  2333322221    1 133445666677  899999999998 5554


Q ss_pred             cCcc--ChhcHHHHHHHHHhcccCCcEEEEeeccCCh-------hhH-----HHHHHHHHHcCce--eeEEEEe
Q 046488          398 DGWI--DFVLLDFILYDWDRVLRPGGLLWIDSFFCAK-------EDM-----NDYLEVFKMLKYK--KHKWVVV  455 (480)
Q Consensus       398 ~h~~--d~~~l~~~L~EI~RVLKPGG~fiI~~f~~~~-------edL-----~~~~~~l~~lGfk--kl~W~~~  455 (480)
                       +..  .......++.|+.|+|||||+|++.++....       ...     +.....+...||.  .+.+.+.
T Consensus       140 -~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~~~i~~~~~  212 (236)
T 1zx0_A          140 -SEETWHTHQFNFIKNHAFRLLKPGGVLTYCNLTSWGELMKSKYSDITIMFEETQVPALLEAGFRRENIRTEVM  212 (236)
T ss_dssp             -BGGGTTTHHHHHHHHTHHHHEEEEEEEEECCHHHHHHHTTTTCSCHHHHHHHHTHHHHHHTTCCGGGEEEEEE
T ss_pred             -chhhhhhhhHHHHHHHHHHhcCCCeEEEEEecCcHHHhhchhhhhhhhhccHHHHHHHHHCCCCCCceeEEEE
Confidence             222  1222346899999999999999986432110       001     2344677888998  3555543

>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}

Probab=99.40  E-value=3.3e-13  Score=132.37  Aligned_cols=149  Identities=16%  Similarity=0.112  Sum_probs=90.1

Q ss_pred             CCeEEEECCCCcHHHHHHhhC--CCEEEEEecCCChhHHHHHHHhC----------------------------------
Q 046488          326 IRIGLDFSIGTGTFAARMREF--NVTLVSAIINLGAPFNEMIALRG----------------------------------  369 (480)
Q Consensus       326 iR~VLDVGCGtG~fAa~Lae~--gV~Vv~vd~d~~~~~~~~iA~rg----------------------------------  369 (480)
                      ..+|||||||+|.++..|+++  +..++++|++   +.+...|.++                                  
T Consensus        47 ~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis---~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  123 (292)
T 3g07_A           47 GRDVLDLGCNVGHLTLSIACKWGPSRMVGLDID---SRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKR  123 (292)
T ss_dssp             TSEEEEESCTTCHHHHHHHHHTCCSEEEEEESC---HHHHHHHHHTC---------------------------------
T ss_pred             CCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCC---HHHHHHHHHHHHhhhhhhcccccccccccccccccccccccccc
Confidence            358999999999999999987  6788998876   2333333332                                  


Q ss_pred             -------------------------------CCCeeeecccC-----CCCCCCccchheecccccCcc---ChhcHHHHH
Q 046488          370 -------------------------------LVPLYITINQR-----VPFFDNTLDLIHTTRFLDGWI---DFVLLDFIL  410 (480)
Q Consensus       370 -------------------------------lip~~~~~ae~-----LPFpd~SFDlV~ss~vL~h~~---d~~~l~~~L  410 (480)
                                                     .+.+..++...     +++.+++||+|+|..+++++.   .+..+..++
T Consensus       124 ~~~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~vl~~ihl~~~~~~~~~~l  203 (292)
T 3g07_A          124 SCFPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHLNWGDEGLKRMF  203 (292)
T ss_dssp             ------------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTTCCCCEEEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred             ccccchhhhccCccccccccccccccccccccceEEecccccCccccccccCCCcCEEEEChHHHHhhhcCCHHHHHHHH
Confidence                                           12222333222     246789999999999886553   333457899


Q ss_pred             HHHHhcccCCcEEEEee--cc---CC---hhhH-----------HHHHHHHHH--cCceeeEEEEeecc-CCCCcceeEE
Q 046488          411 YDWDRVLRPGGLLWIDS--FF---CA---KEDM-----------NDYLEVFKM--LKYKKHKWVVVPKR-DKDDREVFFS  468 (480)
Q Consensus       411 ~EI~RVLKPGG~fiI~~--f~---~~---~edL-----------~~~~~~l~~--lGfkkl~W~~~~k~-d~~~~E~~ls  468 (480)
                      .+++|+|||||+|++..  |.   ..   .+.+           +.+.+++..  +||+.+........ ..+-.-  ..
T Consensus       204 ~~~~~~LkpGG~lil~~~~~~~y~~~~~~~~~~~~~~~~~~~~p~~~~~~L~~~~~GF~~~~~~~~~~~~~~g~~r--~i  281 (292)
T 3g07_A          204 RRIYRHLRPGGILVLEPQPWSSYGKRKTLTETIYKNYYRIQLKPEQFSSYLTSPDVGFSSYELVATPHNTSKGFQR--PV  281 (292)
T ss_dssp             HHHHHHEEEEEEEEEECCCHHHHHTTTTSCHHHHHHHHHCCCCGGGHHHHHTSTTTCCCEEEEC-----------C--CC
T ss_pred             HHHHHHhCCCcEEEEecCCchhhhhhhcccHHHHhhhhcEEEcHHHHHHHHHhcCCCceEEEEeccCCCCCCCccc--eE
Confidence            99999999999999862  11   11   1111           235678888  99987654322111 110001  13


Q ss_pred             EEEEeCCCCCC
Q 046488          469 AVLEKPPRPFR  479 (480)
Q Consensus       469 av~qKP~~~~~  479 (480)
                      .+++|+..++|
T Consensus       282 ~~~~k~~~~~~  292 (292)
T 3g07_A          282 YLFHKARSPSH  292 (292)
T ss_dssp             EEEECCC----
T ss_pred             EEEEcCCCCCC
Confidence            46888876654

>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}

Probab=99.40  E-value=1.3e-12  Score=126.18  Aligned_cols=97  Identities=13%  Similarity=-0.007  Sum_probs=75.2

Q ss_pred             CeEEEECCCCcHHHHHHhhCCCEEEEEecCCChhHHH----HHHHhC-CCCeeeecccCCCCCCCccchheecccccCcc
Q 046488          327 RIGLDFSIGTGTFAARMREFNVTLVSAIINLGAPFNE----MIALRG-LVPLYITINQRVPFFDNTLDLIHTTRFLDGWI  401 (480)
Q Consensus       327 R~VLDVGCGtG~fAa~Lae~gV~Vv~vd~d~~~~~~~----~iA~rg-lip~~~~~ae~LPFpd~SFDlV~ss~vL~h~~  401 (480)
                      .+|||+|||+|.++..|+++|..+++++++.  .+..    .+...+ .+.+..++...+++ +++||+|++..+++|+.
T Consensus       122 ~~vLD~GcG~G~~~~~l~~~g~~v~~vD~s~--~~~~~a~~~~~~~~~~~~~~~~d~~~~~~-~~~fD~i~~~~~~~~~~  198 (286)
T 3m70_A          122 CKVLDLGCGQGRNSLYLSLLGYDVTSWDHNE--NSIAFLNETKEKENLNISTALYDINAANI-QENYDFIVSTVVFMFLN  198 (286)
T ss_dssp             CEEEEESCTTCHHHHHHHHTTCEEEEEESCH--HHHHHHHHHHHHTTCCEEEEECCGGGCCC-CSCEEEEEECSSGGGSC
T ss_pred             CcEEEECCCCCHHHHHHHHCCCeEEEEECCH--HHHHHHHHHHHHcCCceEEEEeccccccc-cCCccEEEEccchhhCC
Confidence            4899999999999999999999999988763  2222    222233 23445566777777 89999999999998875


Q ss_pred             ChhcHHHHHHHHHhcccCCcEEEEee
Q 046488          402 DFVLLDFILYDWDRVLRPGGLLWIDS  427 (480)
Q Consensus       402 d~~~l~~~L~EI~RVLKPGG~fiI~~  427 (480)
                      ++. +..++.++.|+|||||++++..
T Consensus       199 ~~~-~~~~l~~~~~~LkpgG~l~i~~  223 (286)
T 3m70_A          199 RER-VPSIIKNMKEHTNVGGYNLIVA  223 (286)
T ss_dssp             GGG-HHHHHHHHHHTEEEEEEEEEEE
T ss_pred             HHH-HHHHHHHHHHhcCCCcEEEEEE
Confidence            443 4679999999999999987754

>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...

Probab=99.39  E-value=6.3e-13  Score=128.98  Aligned_cols=129  Identities=13%  Similarity=0.041  Sum_probs=84.7

Q ss_pred             CCeEEEECCCCcHHHHHHhh-CCCEEEEEecCCChhHHHHHHH---------------------hCC-------------
Q 046488          326 IRIGLDFSIGTGTFAARMRE-FNVTLVSAIINLGAPFNEMIAL---------------------RGL-------------  370 (480)
Q Consensus       326 iR~VLDVGCGtG~fAa~Lae-~gV~Vv~vd~d~~~~~~~~iA~---------------------rgl-------------  370 (480)
                      ..+|||||||+|.++..++. .+..++++|++  ..+...+.+                     .+.             
T Consensus        72 ~~~vLDiGcG~G~~~~l~~~~~~~~v~gvD~s--~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  149 (289)
T 2g72_A           72 GRTLIDIGSGPTVYQLLSACSHFEDITMTDFL--EVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRA  149 (289)
T ss_dssp             CSEEEEETCTTCCGGGTTGGGGCSEEEEECSC--HHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHH
T ss_pred             CCeEEEECCCcChHHHHhhccCCCeEEEeCCC--HHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHHHHHh
Confidence            35899999999996655544 36788888865  233332211                     010             


Q ss_pred             --CCeeeecccC-CCC-----CCCccchheecccccCccCh-hcHHHHHHHHHhcccCCcEEEEeeccCC----------
Q 046488          371 --VPLYITINQR-VPF-----FDNTLDLIHTTRFLDGWIDF-VLLDFILYDWDRVLRPGGLLWIDSFFCA----------  431 (480)
Q Consensus       371 --ip~~~~~ae~-LPF-----pd~SFDlV~ss~vL~h~~d~-~~l~~~L~EI~RVLKPGG~fiI~~f~~~----------  431 (480)
                        +.+...+++. +||     ++++||+|++..+++++.+. .....+|.|+.|+|||||+|++......          
T Consensus       150 ~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~LkpGG~l~~~~~~~~~~~~~~~~~~  229 (289)
T 2g72_A          150 RVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALEESWYLAGEARL  229 (289)
T ss_dssp             HEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEESCCEEEETTEEE
T ss_pred             hhceEEecccCCCCCccccccCCCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEEecCcceEEcCCeee
Confidence              1112224444 664     45679999999999884332 1236799999999999999998632110          


Q ss_pred             ---hhhHHHHHHHHHHcCceeeEEEEee
Q 046488          432 ---KEDMNDYLEVFKMLKYKKHKWVVVP  456 (480)
Q Consensus       432 ---~edL~~~~~~l~~lGfkkl~W~~~~  456 (480)
                         .-..+.+.++++..||+.+.+....
T Consensus       230 ~~~~~~~~~l~~~l~~aGf~~~~~~~~~  257 (289)
T 2g72_A          230 TVVPVSEEEVREALVRSGYKVRDLRTYI  257 (289)
T ss_dssp             ECCCCCHHHHHHHHHHTTEEEEEEEEEE
T ss_pred             eeccCCHHHHHHHHHHcCCeEEEeeEee
Confidence               1134678889999999988776543

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*

Probab=99.39  E-value=2e-12  Score=116.57  Aligned_cols=128  Identities=11%  Similarity=0.015  Sum_probs=79.8

Q ss_pred             CeEEEECCCCcHHHHHHhhCCCEEEEEecCCChhHHH----HHHHhCC--CCeeeecccCCC-CCCCccchheecccccC
Q 046488          327 RIGLDFSIGTGTFAARMREFNVTLVSAIINLGAPFNE----MIALRGL--VPLYITINQRVP-FFDNTLDLIHTTRFLDG  399 (480)
Q Consensus       327 R~VLDVGCGtG~fAa~Lae~gV~Vv~vd~d~~~~~~~----~iA~rgl--ip~~~~~ae~LP-Fpd~SFDlV~ss~vL~h  399 (480)
                      .+|||+|||+|.++..|++++..++++|++.  .+..    .+...+.  +.+..+..+.++ +.+++||+|+++....+
T Consensus        24 ~~vLDiGcG~G~~~~~la~~~~~v~~vD~s~--~~l~~a~~~~~~~~~~~v~~~~~~~~~l~~~~~~~fD~v~~~~~~~~  101 (185)
T 3mti_A           24 SIVVDATMGNGNDTAFLAGLSKKVYAFDVQE--QALGKTSQRLSDLGIENTELILDGHENLDHYVREPIRAAIFNLGYLP  101 (185)
T ss_dssp             CEEEESCCTTSHHHHHHHTTSSEEEEEESCH--HHHHHHHHHHHHHTCCCEEEEESCGGGGGGTCCSCEEEEEEEEC---
T ss_pred             CEEEEEcCCCCHHHHHHHHhCCEEEEEECCH--HHHHHHHHHHHHcCCCcEEEEeCcHHHHHhhccCCcCEEEEeCCCCC
Confidence            4899999999999999999888899988763  2222    2222332  334444455543 56889999987632222


Q ss_pred             c------cChhcHHHHHHHHHhcccCCcEEEEeeccCCh---hhHHHHHHHHHH---cCceeeEEEEee
Q 046488          400 W------IDFVLLDFILYDWDRVLRPGGLLWIDSFFCAK---EDMNDYLEVFKM---LKYKKHKWVVVP  456 (480)
Q Consensus       400 ~------~d~~~l~~~L~EI~RVLKPGG~fiI~~f~~~~---edL~~~~~~l~~---lGfkkl~W~~~~  456 (480)
                      .      ........++.++.|+|||||++++..|....   ++.+.+.+.++.   .+|...++....
T Consensus       102 ~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  170 (185)
T 3mti_A          102 SADKSVITKPHTTLEAIEKILDRLEVGGRLAIMIYYGHDGGDMEKDAVLEYVIGLDQRVFTAMLYQPLN  170 (185)
T ss_dssp             --------CHHHHHHHHHHHHHHEEEEEEEEEEEC------CHHHHHHHHHHHHSCTTTEEEEEEEESS
T ss_pred             CcchhcccChhhHHHHHHHHHHhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHhCCCceEEEEEehhhc
Confidence            1      01122256899999999999999988664322   222334444444   457766666644

>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*

Probab=99.39  E-value=2e-12  Score=126.04  Aligned_cols=122  Identities=13%  Similarity=0.008  Sum_probs=79.9

Q ss_pred             CCeEEEECCCCcHHHHH----HhhC--CCEE--EEEecCCChhHHHHHHHh----CCCC---ee--eecccCCC------
Q 046488          326 IRIGLDFSIGTGTFAAR----MREF--NVTL--VSAIINLGAPFNEMIALR----GLVP---LY--ITINQRVP------  382 (480)
Q Consensus       326 iR~VLDVGCGtG~fAa~----Lae~--gV~V--v~vd~d~~~~~~~~iA~r----glip---~~--~~~ae~LP------  382 (480)
                      ..+|||||||+|.++..    ++.+  ++.+  ++++++  ..+.....++    +.++   +.  ...++.++      
T Consensus        53 ~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S--~~ml~~a~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  130 (292)
T 2aot_A           53 EIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPS--AEQIAKYKELVAKTSNLENVKFAWHKETSSEYQSRMLEK  130 (292)
T ss_dssp             EEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSC--HHHHHHHHHHHHTCSSCTTEEEEEECSCHHHHHHHHHTT
T ss_pred             CCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCC--HHHHHHHHHHHHhccCCCcceEEEEecchhhhhhhhccc
Confidence            35899999999986643    3332  4543  666654  3444332221    1221   11  12234443      


Q ss_pred             CCCCccchheecccccCccChhcHHHHHHHHHhcccCCcEEEEeeccCC---------------------hhhHHHHHHH
Q 046488          383 FFDNTLDLIHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDSFFCA---------------------KEDMNDYLEV  441 (480)
Q Consensus       383 Fpd~SFDlV~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~f~~~---------------------~edL~~~~~~  441 (480)
                      |++++||+|++..+++|+.+.   ..+|.|++|+|||||++++......                     .-..+.+..+
T Consensus       131 ~~~~~fD~V~~~~~l~~~~d~---~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (292)
T 2aot_A          131 KELQKWDFIHMIQMLYYVKDI---PATLKFFHSLLGTNAKMLIIVVSGSSGWDKLWKKYGSRFPQDDLCQYITSDDLTQM  207 (292)
T ss_dssp             TCCCCEEEEEEESCGGGCSCH---HHHHHHHHHTEEEEEEEEEEEECTTSHHHHHHHHHGGGSCCCTTCCCCCHHHHHHH
T ss_pred             cCCCceeEEEEeeeeeecCCH---HHHHHHHHHHcCCCcEEEEEEecCCccHHHHHHHHHHhccCCCcccCCCHHHHHHH
Confidence            779999999999999999877   4699999999999999998632110                     0113457789


Q ss_pred             HHHcCceeeEE
Q 046488          442 FKMLKYKKHKW  452 (480)
Q Consensus       442 l~~lGfkkl~W  452 (480)
                      ++..||+....
T Consensus       208 l~~aGf~~~~~  218 (292)
T 2aot_A          208 LDNLGLKYECY  218 (292)
T ss_dssp             HHHHTCCEEEE
T ss_pred             HHHCCCceEEE
Confidence            99999986653

>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}

Probab=99.38  E-value=7.3e-13  Score=129.11  Aligned_cols=95  Identities=17%  Similarity=0.191  Sum_probs=74.5

Q ss_pred             CCeEEEECCCCcHHHHHHh---hCCCEEEEEecCCChhHHHHH----HHh----CCCCeeeecccCCCCCC------Ccc
Q 046488          326 IRIGLDFSIGTGTFAARMR---EFNVTLVSAIINLGAPFNEMI----ALR----GLVPLYITINQRVPFFD------NTL  388 (480)
Q Consensus       326 iR~VLDVGCGtG~fAa~La---e~gV~Vv~vd~d~~~~~~~~i----A~r----glip~~~~~ae~LPFpd------~SF  388 (480)
                      ..+|||||||+|.++..|+   ..+..+++++++.  .+...+    ...    ..+.+..++++.+|+++      ++|
T Consensus        37 ~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~--~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~f  114 (299)
T 3g5t_A           37 RKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSA--TMIKTAEVIKEGSPDTYKNVSFKISSSDDFKFLGADSVDKQKI  114 (299)
T ss_dssp             CSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCH--HHHHHHHHHHHHCC-CCTTEEEEECCTTCCGGGCTTTTTSSCE
T ss_pred             CCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCH--HHHHHHHHHHHhccCCCCceEEEEcCHHhCCccccccccCCCe
Confidence            4589999999999999999   4578899988762  222222    111    13445667788899888      899


Q ss_pred             chheecccccCccChhcHHHHHHHHHhcccCCcEEEEe
Q 046488          389 DLIHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWID  426 (480)
Q Consensus       389 DlV~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~  426 (480)
                      |+|++..+++|+ +.   ..++.++.|+|||||++++.
T Consensus       115 D~V~~~~~l~~~-~~---~~~l~~~~~~LkpgG~l~i~  148 (299)
T 3g5t_A          115 DMITAVECAHWF-DF---EKFQRSAYANLRKDGTIAIW  148 (299)
T ss_dssp             EEEEEESCGGGS-CH---HHHHHHHHHHEEEEEEEEEE
T ss_pred             eEEeHhhHHHHh-CH---HHHHHHHHHhcCCCcEEEEE
Confidence            999999999888 54   57999999999999999883

>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41

Probab=99.37  E-value=1.2e-12  Score=125.03  Aligned_cols=97  Identities=20%  Similarity=0.230  Sum_probs=76.3

Q ss_pred             CeEEEECCCCcHHHHHHhhCCCEEEEEecCCChhHHHHHHHhCCCCeeeecccCCCCCCCccchheecccccCccChhcH
Q 046488          327 RIGLDFSIGTGTFAARMREFNVTLVSAIINLGAPFNEMIALRGLVPLYITINQRVPFFDNTLDLIHTTRFLDGWIDFVLL  406 (480)
Q Consensus       327 R~VLDVGCGtG~fAa~Lae~gV~Vv~vd~d~~~~~~~~iA~rglip~~~~~ae~LPFpd~SFDlV~ss~vL~h~~d~~~l  406 (480)
                      .+|||+|||+|.++..+++.+..+++++++.  .+......+....+..++.+.+|+++++||+|++..++.|+.+.  .
T Consensus        56 ~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~--~~l~~a~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~~~~~~~~--~  131 (260)
T 2avn_A           56 CRVLDLGGGTGKWSLFLQERGFEVVLVDPSK--EMLEVAREKGVKNVVEAKAEDLPFPSGAFEAVLALGDVLSYVEN--K  131 (260)
T ss_dssp             CEEEEETCTTCHHHHHHHTTTCEEEEEESCH--HHHHHHHHHTCSCEEECCTTSCCSCTTCEEEEEECSSHHHHCSC--H
T ss_pred             CeEEEeCCCcCHHHHHHHHcCCeEEEEeCCH--HHHHHHHhhcCCCEEECcHHHCCCCCCCEEEEEEcchhhhcccc--H
Confidence            4899999999999999999988898888752  34333333322235566788899999999999998888777443  2


Q ss_pred             HHHHHHHHhcccCCcEEEEee
Q 046488          407 DFILYDWDRVLRPGGLLWIDS  427 (480)
Q Consensus       407 ~~~L~EI~RVLKPGG~fiI~~  427 (480)
                      ..++.++.|+|||||++++..
T Consensus       132 ~~~l~~~~~~LkpgG~l~~~~  152 (260)
T 2avn_A          132 DKAFSEIRRVLVPDGLLIATV  152 (260)
T ss_dssp             HHHHHHHHHHEEEEEEEEEEE
T ss_pred             HHHHHHHHHHcCCCeEEEEEe
Confidence            679999999999999999864

>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*

Probab=99.36  E-value=2.3e-12  Score=123.68  Aligned_cols=99  Identities=16%  Similarity=0.070  Sum_probs=73.1

Q ss_pred             CeEEEECCCCcHHHHHHhhCCC-EEEEEecCCChhHHHHHH----HhCC---CCeeeecccCCCC-CCCccchheecccc
Q 046488          327 RIGLDFSIGTGTFAARMREFNV-TLVSAIINLGAPFNEMIA----LRGL---VPLYITINQRVPF-FDNTLDLIHTTRFL  397 (480)
Q Consensus       327 R~VLDVGCGtG~fAa~Lae~gV-~Vv~vd~d~~~~~~~~iA----~rgl---ip~~~~~ae~LPF-pd~SFDlV~ss~vL  397 (480)
                      .+|||+|||+|.++..+++.+. .+++++++.  .+...+.    ..+.   +.+..+++..+|+ ++++||+|++..++
T Consensus        66 ~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~--~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~~l  143 (298)
T 1ri5_A           66 DSVLDLGCGKGGDLLKYERAGIGEYYGVDIAE--VSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQFSF  143 (298)
T ss_dssp             CEEEEETCTTTTTHHHHHHHTCSEEEEEESCH--HHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEESCG
T ss_pred             CeEEEECCCCCHHHHHHHHCCCCEEEEEECCH--HHHHHHHHHHHhcCCCccEEEEECCccccccCCCCCcCEEEECchh
Confidence            4899999999999999988765 788888752  2222211    1121   3445566778888 68999999999998


Q ss_pred             cCc-cChhcHHHHHHHHHhcccCCcEEEEee
Q 046488          398 DGW-IDFVLLDFILYDWDRVLRPGGLLWIDS  427 (480)
Q Consensus       398 ~h~-~d~~~l~~~L~EI~RVLKPGG~fiI~~  427 (480)
                      ++. ........++.++.|+|||||++++..
T Consensus       144 ~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  174 (298)
T 1ri5_A          144 HYAFSTSESLDIAQRNIARHLRPGGYFIMTV  174 (298)
T ss_dssp             GGGGSSHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             hhhcCCHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence            763 233334679999999999999999863

>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}

Probab=99.34  E-value=4.6e-12  Score=128.05  Aligned_cols=122  Identities=15%  Similarity=0.126  Sum_probs=86.2

Q ss_pred             CCeEEEECCCCcHHHHHHhhC--CCEEEEEecCCChhHHHHHHH----hC---CCCeeeecccCC--CCCCCccchheec
Q 046488          326 IRIGLDFSIGTGTFAARMREF--NVTLVSAIINLGAPFNEMIAL----RG---LVPLYITINQRV--PFFDNTLDLIHTT  394 (480)
Q Consensus       326 iR~VLDVGCGtG~fAa~Lae~--gV~Vv~vd~d~~~~~~~~iA~----rg---lip~~~~~ae~L--PFpd~SFDlV~ss  394 (480)
                      ..+|||||||+|.++..++++  +..++++|+   ..+......    .+   .+.+..++....  |++ ++||+|++.
T Consensus       180 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~---~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~p-~~~D~v~~~  255 (363)
T 3dp7_A          180 PKRLLDIGGNTGKWATQCVQYNKEVEVTIVDL---PQQLEMMRKQTAGLSGSERIHGHGANLLDRDVPFP-TGFDAVWMS  255 (363)
T ss_dssp             CSEEEEESCTTCHHHHHHHHHSTTCEEEEEEC---HHHHHHHHHHHTTCTTGGGEEEEECCCCSSSCCCC-CCCSEEEEE
T ss_pred             CCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeC---HHHHHHHHHHHHhcCcccceEEEEccccccCCCCC-CCcCEEEEe
Confidence            458999999999999999884  667777774   233222211    12   234455554443  566 899999999


Q ss_pred             ccccCccChhcHHHHHHHHHhcccCCcEEEEeeccCCh---------------------------hhHHHHHHHHHHcCc
Q 046488          395 RFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDSFFCAK---------------------------EDMNDYLEVFKMLKY  447 (480)
Q Consensus       395 ~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~f~~~~---------------------------edL~~~~~~l~~lGf  447 (480)
                      .++++|.++.. ..+|.++.|+|||||+++|.+.....                           ...++|.++++..||
T Consensus       256 ~vlh~~~~~~~-~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~AGf  334 (363)
T 3dp7_A          256 QFLDCFSEEEV-ISILTRVAQSIGKDSKVYIMETLWDRQRYETASYCLTQISLYFTAMANGNSKMFHSDDLIRCIENAGL  334 (363)
T ss_dssp             SCSTTSCHHHH-HHHHHHHHHHCCTTCEEEEEECCTTSCSSHHHHHHHHHHHHHHHHSSCSSCCSCCHHHHHHHHHTTTE
T ss_pred             chhhhCCHHHH-HHHHHHHHHhcCCCcEEEEEeeccCCccccchhhHHHHhhhhHHhhhCCCCcccCHHHHHHHHHHcCC
Confidence            99999987642 56899999999999999886432211                           023467889999999


Q ss_pred             eeeEE
Q 046488          448 KKHKW  452 (480)
Q Consensus       448 kkl~W  452 (480)
                      +.+..
T Consensus       335 ~~v~~  339 (363)
T 3dp7_A          335 EVEEI  339 (363)
T ss_dssp             EESCC
T ss_pred             eEEEE
Confidence            87643

>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*

Probab=99.34  E-value=7.8e-12  Score=109.11  Aligned_cols=138  Identities=16%  Similarity=0.137  Sum_probs=92.0

Q ss_pred             CeEEEECCCCcHHHHHHhhC---CCEEEEEecCCChhHHHHHHHhCCCCeeeecccCCC--------CCCCccchheecc
Q 046488          327 RIGLDFSIGTGTFAARMREF---NVTLVSAIINLGAPFNEMIALRGLVPLYITINQRVP--------FFDNTLDLIHTTR  395 (480)
Q Consensus       327 R~VLDVGCGtG~fAa~Lae~---gV~Vv~vd~d~~~~~~~~iA~rglip~~~~~ae~LP--------Fpd~SFDlV~ss~  395 (480)
                      .+|||+|||+|.++..+++.   +..+++++++. ...      ...+.+..++...++        +++++||+|++..
T Consensus        24 ~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~-~~~------~~~~~~~~~d~~~~~~~~~~~~~~~~~~~D~i~~~~   96 (180)
T 1ej0_A           24 MTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-MDP------IVGVDFLQGDFRDELVMKALLERVGDSKVQVVMSDM   96 (180)
T ss_dssp             CEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC-CCC------CTTEEEEESCTTSHHHHHHHHHHHTTCCEEEEEECC
T ss_pred             CeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc-ccc------cCcEEEEEcccccchhhhhhhccCCCCceeEEEECC
Confidence            48999999999999999886   36888888764 111      023444555566666        7889999999987


Q ss_pred             cccCccChh--c------HHHHHHHHHhcccCCcEEEEeeccCChhhHHHHHHHHHHcCceeeEEEEeeccCCCCcceeE
Q 046488          396 FLDGWIDFV--L------LDFILYDWDRVLRPGGLLWIDSFFCAKEDMNDYLEVFKMLKYKKHKWVVVPKRDKDDREVFF  467 (480)
Q Consensus       396 vL~h~~d~~--~------l~~~L~EI~RVLKPGG~fiI~~f~~~~edL~~~~~~l~~lGfkkl~W~~~~k~d~~~~E~~l  467 (480)
                      .+++.....  .      ...++.++.|+|||||.+++..+....  ...+.+.++.. |+.+.+...........|.|+
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~--~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  173 (180)
T 1ej0_A           97 APNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQGEG--FDEYLREIRSL-FTKVKVRKPDSSRARSREVYI  173 (180)
T ss_dssp             CCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESSTT--HHHHHHHHHHH-EEEEEEECCTTSCTTCCEEEE
T ss_pred             CccccCCCccchHHHHHHHHHHHHHHHHHcCCCcEEEEEEecCCc--HHHHHHHHHHh-hhhEEeecCCcccccCceEEE
Confidence            776543320  0      136899999999999999987654332  33444455543 676665433222224568888


Q ss_pred             EEEEEeC
Q 046488          468 SAVLEKP  474 (480)
Q Consensus       468 sav~qKP  474 (480)
                      .+.-.||
T Consensus       174 ~~~~~~~  180 (180)
T 1ej0_A          174 VATGRKP  180 (180)
T ss_dssp             EEEEECC
T ss_pred             EEccCCC
Confidence            7766665

>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}

Probab=99.34  E-value=4.6e-12  Score=120.90  Aligned_cols=106  Identities=12%  Similarity=0.114  Sum_probs=75.1

Q ss_pred             hcCCCCCCCCeEEEECCCCcHHHHHHhhC-C--CEEEEEecCCC--------hhHHHHHHHhCC---CCeeeec---ccC
Q 046488          318 VLDIKPGEIRIGLDFSIGTGTFAARMREF-N--VTLVSAIINLG--------APFNEMIALRGL---VPLYITI---NQR  380 (480)
Q Consensus       318 vL~l~~g~iR~VLDVGCGtG~fAa~Lae~-g--V~Vv~vd~d~~--------~~~~~~iA~rgl---ip~~~~~---ae~  380 (480)
                      .+.+.++  .+|||||||+|.++..++++ |  ..+++++++..        ..+...+...+.   +.+...+   ...
T Consensus        38 ~~~~~~~--~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~  115 (275)
T 3bkx_A           38 AWQVKPG--EKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNTNLSDDL  115 (275)
T ss_dssp             HHTCCTT--CEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEEECSCCTTTCC
T ss_pred             HcCCCCC--CEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCCCCceEEEECChhhhcc
Confidence            3455555  48999999999999999987 4  78899988642        112222222222   3344444   567


Q ss_pred             CCCCCCccchheecccccCccChhcHHHHHHHHHhcccCCcEEEEeec
Q 046488          381 VPFFDNTLDLIHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDSF  428 (480)
Q Consensus       381 LPFpd~SFDlV~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~f  428 (480)
                      +|+++++||+|++..+++|+.++.   .++..+.++++|||++++..+
T Consensus       116 ~~~~~~~fD~v~~~~~l~~~~~~~---~~~~~~~~l~~~gG~l~~~~~  160 (275)
T 3bkx_A          116 GPIADQHFDRVVLAHSLWYFASAN---ALALLFKNMAAVCDHVDVAEW  160 (275)
T ss_dssp             GGGTTCCCSEEEEESCGGGSSCHH---HHHHHHHHHTTTCSEEEEEEE
T ss_pred             CCCCCCCEEEEEEccchhhCCCHH---HHHHHHHHHhCCCCEEEEEEe
Confidence            889999999999999999988764   366666666667999999754

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=99.32  E-value=5.9e-12  Score=116.11  Aligned_cols=97  Identities=20%  Similarity=0.294  Sum_probs=73.3

Q ss_pred             CeEEEECCCCcHHHHHHhhCCCEEEEEecCCChhHHHHH----HHh-CCCCeeeecccCCCCCCCccchheecccccCcc
Q 046488          327 RIGLDFSIGTGTFAARMREFNVTLVSAIINLGAPFNEMI----ALR-GLVPLYITINQRVPFFDNTLDLIHTTRFLDGWI  401 (480)
Q Consensus       327 R~VLDVGCGtG~fAa~Lae~gV~Vv~vd~d~~~~~~~~i----A~r-glip~~~~~ae~LPFpd~SFDlV~ss~vL~h~~  401 (480)
                      .+|||+|||+|.++..+++++..+++++++.  .+...+    ... ..+.+..++...+++++++||+|++..+++++.
T Consensus        40 ~~vLDlG~G~G~~~~~l~~~~~~v~~vD~s~--~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~  117 (227)
T 1ve3_A           40 GKVLDLACGVGGFSFLLEDYGFEVVGVDISE--DMIRKAREYAKSRESNVEFIVGDARKLSFEDKTFDYVIFIDSIVHFE  117 (227)
T ss_dssp             CEEEEETCTTSHHHHHHHHTTCEEEEEESCH--HHHHHHHHHHHHTTCCCEEEECCTTSCCSCTTCEEEEEEESCGGGCC
T ss_pred             CeEEEEeccCCHHHHHHHHcCCEEEEEECCH--HHHHHHHHHHHhcCCCceEEECchhcCCCCCCcEEEEEEcCchHhCC
Confidence            4899999999999999999888888888652  222221    111 235556677778899999999999998854443


Q ss_pred             ChhcHHHHHHHHHhcccCCcEEEEe
Q 046488          402 DFVLLDFILYDWDRVLRPGGLLWID  426 (480)
Q Consensus       402 d~~~l~~~L~EI~RVLKPGG~fiI~  426 (480)
                      ... ...++.++.|+|||||++++.
T Consensus       118 ~~~-~~~~l~~~~~~L~~gG~l~~~  141 (227)
T 1ve3_A          118 PLE-LNQVFKEVRRVLKPSGKFIMY  141 (227)
T ss_dssp             HHH-HHHHHHHHHHHEEEEEEEEEE
T ss_pred             HHH-HHHHHHHHHHHcCCCcEEEEE
Confidence            222 367999999999999999886

>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}

Probab=99.31  E-value=1.5e-11  Score=121.04  Aligned_cols=126  Identities=15%  Similarity=0.180  Sum_probs=90.5

Q ss_pred             CCeEEEECCCCcHHHHHHhhC--CCEEEEEecCCChh--HHHHHHHhCC---CCeeeecccCCCCCCCccchheeccccc
Q 046488          326 IRIGLDFSIGTGTFAARMREF--NVTLVSAIINLGAP--FNEMIALRGL---VPLYITINQRVPFFDNTLDLIHTTRFLD  398 (480)
Q Consensus       326 iR~VLDVGCGtG~fAa~Lae~--gV~Vv~vd~d~~~~--~~~~iA~rgl---ip~~~~~ae~LPFpd~SFDlV~ss~vL~  398 (480)
                      ..+|||+|||+|.++..++++  +..+++++++ ...  +...+...+.   +.+..++....|++++ ||+|++..+++
T Consensus       166 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~-~D~v~~~~~l~  243 (335)
T 2r3s_A          166 PLKVLDISASHGLFGIAVAQHNPNAEIFGVDWA-SVLEVAKENARIQGVASRYHTIAGSAFEVDYGND-YDLVLLPNFLH  243 (335)
T ss_dssp             CSEEEEETCTTCHHHHHHHHHCTTCEEEEEECH-HHHHHHHHHHHHHTCGGGEEEEESCTTTSCCCSC-EEEEEEESCGG
T ss_pred             CCEEEEECCCcCHHHHHHHHHCCCCeEEEEecH-HHHHHHHHHHHhcCCCcceEEEecccccCCCCCC-CcEEEEcchhc
Confidence            358999999999999999886  6788888865 211  1122222232   4455566666677665 99999999999


Q ss_pred             CccChhcHHHHHHHHHhcccCCcEEEEeeccCChh------------------------hHHHHHHHHHHcCceeeEEEE
Q 046488          399 GWIDFVLLDFILYDWDRVLRPGGLLWIDSFFCAKE------------------------DMNDYLEVFKMLKYKKHKWVV  454 (480)
Q Consensus       399 h~~d~~~l~~~L~EI~RVLKPGG~fiI~~f~~~~e------------------------dL~~~~~~l~~lGfkkl~W~~  454 (480)
                      +|.++. ...++.++.|+|||||++++.++.....                        ..+++.+++++.||+.+.+..
T Consensus       244 ~~~~~~-~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~ll~~aGf~~~~~~~  322 (335)
T 2r3s_A          244 HFDVAT-CEQLLRKIKTALAVEGKVIVFDFIPNSDRITPPDAAAFSLVMLATTPNGDAYTFAEYESMFSNAGFSHSQLHS  322 (335)
T ss_dssp             GSCHHH-HHHHHHHHHHHEEEEEEEEEEECCCCTTSSCSHHHHHHHHHHHHHSSSCCCCCHHHHHHHHHHTTCSEEEEEC
T ss_pred             cCCHHH-HHHHHHHHHHhCCCCcEEEEEeecCCCCcCCchHHHHHHHHHHeeCCCCCcCCHHHHHHHHHHCCCCeeeEEE
Confidence            996553 2679999999999999988875433210                        134678899999999887643

>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}

Probab=99.31  E-value=3.1e-12  Score=116.49  Aligned_cols=101  Identities=15%  Similarity=0.108  Sum_probs=75.5

Q ss_pred             CeEEEECCCCcHHHHHHhhCCC-EEEEEecCCChhHHHHHHHh----CCCCeeeecccCCCCCCCccchheecccccCcc
Q 046488          327 RIGLDFSIGTGTFAARMREFNV-TLVSAIINLGAPFNEMIALR----GLVPLYITINQRVPFFDNTLDLIHTTRFLDGWI  401 (480)
Q Consensus       327 R~VLDVGCGtG~fAa~Lae~gV-~Vv~vd~d~~~~~~~~iA~r----glip~~~~~ae~LPFpd~SFDlV~ss~vL~h~~  401 (480)
                      .+|||+|||+|.++..+++.+. .+++++++.  .+......+    ..+.+..+++..+|+++++||+|++..+++++.
T Consensus        44 ~~vLdiGcG~G~~~~~l~~~~~~~v~~~D~s~--~~~~~a~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~~~~~~  121 (215)
T 2pxx_A           44 DRILVLGCGNSALSYELFLGGFPNVTSVDYSS--VVVAAMQACYAHVPQLRWETMDVRKLDFPSASFDVVLEKGTLDALL  121 (215)
T ss_dssp             CCEEEETCTTCSHHHHHHHTTCCCEEEEESCH--HHHHHHHHHTTTCTTCEEEECCTTSCCSCSSCEEEEEEESHHHHHT
T ss_pred             CeEEEECCCCcHHHHHHHHcCCCcEEEEeCCH--HHHHHHHHhcccCCCcEEEEcchhcCCCCCCcccEEEECcchhhhc
Confidence            4799999999999999999876 788887652  333222222    234556667778899999999999988776543


Q ss_pred             ------------ChhcHHHHHHHHHhcccCCcEEEEeecc
Q 046488          402 ------------DFVLLDFILYDWDRVLRPGGLLWIDSFF  429 (480)
Q Consensus       402 ------------d~~~l~~~L~EI~RVLKPGG~fiI~~f~  429 (480)
                                  .......++.++.|+|||||++++..+.
T Consensus       122 ~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~  161 (215)
T 2pxx_A          122 AGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTSA  161 (215)
T ss_dssp             TTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEEEEEESC
T ss_pred             cccccccccccchhHHHHHHHHHHHHhCcCCCEEEEEeCC
Confidence                        1123367999999999999999997654

>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20

Probab=99.31  E-value=2.6e-11  Score=114.87  Aligned_cols=117  Identities=9%  Similarity=-0.004  Sum_probs=83.3

Q ss_pred             CeEEEECCCCcHHHHHHhh--CCCEEEEEecCCChhHHH----HHHHhCC--CCeeeecccCCCCC---CCccchheecc
Q 046488          327 RIGLDFSIGTGTFAARMRE--FNVTLVSAIINLGAPFNE----MIALRGL--VPLYITINQRVPFF---DNTLDLIHTTR  395 (480)
Q Consensus       327 R~VLDVGCGtG~fAa~Lae--~gV~Vv~vd~d~~~~~~~----~iA~rgl--ip~~~~~ae~LPFp---d~SFDlV~ss~  395 (480)
                      .+|||+|||+|.++..|+.  .+..+++++++.  .+..    .+...+.  +.++.++++.++++   +++||+|++..
T Consensus        72 ~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~--~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~V~~~~  149 (240)
T 1xdz_A           72 NTICDVGAGAGFPSLPIKICFPHLHVTIVDSLN--KRITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIVTARA  149 (240)
T ss_dssp             CEEEEECSSSCTTHHHHHHHCTTCEEEEEESCH--HHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEEEEC
T ss_pred             CEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCH--HHHHHHHHHHHHcCCCCEEEEeccHHHhcccccccCCccEEEEec
Confidence            4899999999999999984  467888888653  2222    2222333  44555667777765   78999999865


Q ss_pred             cccCccChhcHHHHHHHHHhcccCCcEEEEeeccCChhhHHHHHHHHHHcCceeeEE
Q 046488          396 FLDGWIDFVLLDFILYDWDRVLRPGGLLWIDSFFCAKEDMNDYLEVFKMLKYKKHKW  452 (480)
Q Consensus       396 vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~f~~~~edL~~~~~~l~~lGfkkl~W  452 (480)
                      +    .+.   ..++.++.|+|||||+|++..-....+++..+...++..||.....
T Consensus       150 ~----~~~---~~~l~~~~~~LkpgG~l~~~~g~~~~~~~~~~~~~l~~~g~~~~~~  199 (240)
T 1xdz_A          150 V----ARL---SVLSELCLPLVKKNGLFVALKAASAEEELNAGKKAITTLGGELENI  199 (240)
T ss_dssp             C----SCH---HHHHHHHGGGEEEEEEEEEEECC-CHHHHHHHHHHHHHTTEEEEEE
T ss_pred             c----CCH---HHHHHHHHHhcCCCCEEEEEeCCCchHHHHHHHHHHHHcCCeEeEE
Confidence            2    232   5699999999999999988643334556667778889999976543

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}

Probab=99.31  E-value=2.3e-11  Score=108.04  Aligned_cols=125  Identities=18%  Similarity=0.043  Sum_probs=82.9

Q ss_pred             HhcCCCCCCCCeEEEECCCCcHHHHHHhhC--CCEEEEEecCCChhHHHHHH---HhCCCC---eeeec-ccCCCCCCCc
Q 046488          317 EVLDIKPGEIRIGLDFSIGTGTFAARMREF--NVTLVSAIINLGAPFNEMIA---LRGLVP---LYITI-NQRVPFFDNT  387 (480)
Q Consensus       317 ~vL~l~~g~iR~VLDVGCGtG~fAa~Lae~--gV~Vv~vd~d~~~~~~~~iA---~rglip---~~~~~-ae~LPFpd~S  387 (480)
                      +.+.+.++  .+|||+|||+|.++..+++.  +..+++++++.  .+...+.   .+..++   .+.++ .+.+|..+++
T Consensus        19 ~~~~~~~~--~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~--~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~   94 (178)
T 3hm2_A           19 SALAPKPH--ETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISE--ERRERILSNAINLGVSDRIAVQQGAPRAFDDVPDN   94 (178)
T ss_dssp             HHHCCCTT--EEEEEESTTTTHHHHHHHTTSSSEEEEEECSCH--HHHHHHHHHHHTTTCTTSEEEECCTTGGGGGCCSC
T ss_pred             HHhcccCC--CeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCH--HHHHHHHHHHHHhCCCCCEEEecchHhhhhccCCC
Confidence            34455544  48999999999999999987  67788887652  2222221   122222   33333 3455554589


Q ss_pred             cchheecccccCccChhcHHHHHHHHHhcccCCcEEEEeeccCChhhHHHHHHHHHHcCceeeEEEE
Q 046488          388 LDLIHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDSFFCAKEDMNDYLEVFKMLKYKKHKWVV  454 (480)
Q Consensus       388 FDlV~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~f~~~~edL~~~~~~l~~lGfkkl~W~~  454 (480)
                      ||+|++..++++   .    .++.++.|+|||||++++....  .+....+...++..|+.......
T Consensus        95 ~D~i~~~~~~~~---~----~~l~~~~~~L~~gG~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~  152 (178)
T 3hm2_A           95 PDVIFIGGGLTA---P----GVFAAAWKRLPVGGRLVANAVT--VESEQMLWALRKQFGGTISSFAI  152 (178)
T ss_dssp             CSEEEECC-TTC---T----THHHHHHHTCCTTCEEEEEECS--HHHHHHHHHHHHHHCCEEEEEEE
T ss_pred             CCEEEECCcccH---H----HHHHHHHHhcCCCCEEEEEeec--cccHHHHHHHHHHcCCeeEEEEe
Confidence            999999988866   2    3899999999999999986543  23445566777887876554443

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}

Probab=99.30  E-value=3.8e-12  Score=119.46  Aligned_cols=112  Identities=12%  Similarity=0.046  Sum_probs=81.2

Q ss_pred             CeEEEECCCCcHHHHHHhhCCCEEEEEecCCChhHHHHHHHh-CCCCeeeecc-cCCCCC-CCccchheecccccCccCh
Q 046488          327 RIGLDFSIGTGTFAARMREFNVTLVSAIINLGAPFNEMIALR-GLVPLYITIN-QRVPFF-DNTLDLIHTTRFLDGWIDF  403 (480)
Q Consensus       327 R~VLDVGCGtG~fAa~Lae~gV~Vv~vd~d~~~~~~~~iA~r-glip~~~~~a-e~LPFp-d~SFDlV~ss~vL~h~~d~  403 (480)
                      .+|||+|||+|.++..+++.+..+++++++.  .+......+ ..+.+..++. +.+|++ +++||+|++..      +.
T Consensus        50 ~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~--~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~~fD~v~~~~------~~  121 (226)
T 3m33_A           50 TRVLEAGCGHGPDAARFGPQAARWAAYDFSP--ELLKLARANAPHADVYEWNGKGELPAGLGAPFGLIVSRR------GP  121 (226)
T ss_dssp             CEEEEESCTTSHHHHHHGGGSSEEEEEESCH--HHHHHHHHHCTTSEEEECCSCSSCCTTCCCCEEEEEEES------CC
T ss_pred             CeEEEeCCCCCHHHHHHHHcCCEEEEEECCH--HHHHHHHHhCCCceEEEcchhhccCCcCCCCEEEEEeCC------CH
Confidence            4899999999999999999988999988752  333333332 2345556665 789999 99999999862      22


Q ss_pred             hcHHHHHHHHHhcccCCcEEEEeeccCChhhHHHHHHHHHHcCceeeEE
Q 046488          404 VLLDFILYDWDRVLRPGGLLWIDSFFCAKEDMNDYLEVFKMLKYKKHKW  452 (480)
Q Consensus       404 ~~l~~~L~EI~RVLKPGG~fiI~~f~~~~edL~~~~~~l~~lGfkkl~W  452 (480)
                         ..++.++.|+|||||+++...-+.   ....+...++..||.....
T Consensus       122 ---~~~l~~~~~~LkpgG~l~~~~~~~---~~~~~~~~l~~~Gf~~~~~  164 (226)
T 3m33_A          122 ---TSVILRLPELAAPDAHFLYVGPRL---NVPEVPERLAAVGWDIVAE  164 (226)
T ss_dssp             ---SGGGGGHHHHEEEEEEEEEEESSS---CCTHHHHHHHHTTCEEEEE
T ss_pred             ---HHHHHHHHHHcCCCcEEEEeCCcC---CHHHHHHHHHHCCCeEEEE
Confidence               248999999999999988332221   2234667788889876554

>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}

Probab=99.30  E-value=1.8e-11  Score=112.22  Aligned_cols=130  Identities=13%  Similarity=0.128  Sum_probs=88.3

Q ss_pred             CeEEEECCCCcHHHHHHhhCCC-EEEEEecCCChhHHH----HHHHhCC--CCeeeecccCCCCCCCccchheecccccC
Q 046488          327 RIGLDFSIGTGTFAARMREFNV-TLVSAIINLGAPFNE----MIALRGL--VPLYITINQRVPFFDNTLDLIHTTRFLDG  399 (480)
Q Consensus       327 R~VLDVGCGtG~fAa~Lae~gV-~Vv~vd~d~~~~~~~----~iA~rgl--ip~~~~~ae~LPFpd~SFDlV~ss~vL~h  399 (480)
                      .+|||+|||+|.++..+++.+. .+++++++.  .+..    .+...+.  +.+..++.  +++.+++||+|++...+++
T Consensus        62 ~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~--~~~~~a~~~~~~~~~~~v~~~~~d~--~~~~~~~fD~i~~~~~~~~  137 (205)
T 3grz_A           62 LTVADVGTGSGILAIAAHKLGAKSVLATDISD--ESMTAAEENAALNGIYDIALQKTSL--LADVDGKFDLIVANILAEI  137 (205)
T ss_dssp             CEEEEETCTTSHHHHHHHHTTCSEEEEEESCH--HHHHHHHHHHHHTTCCCCEEEESST--TTTCCSCEEEEEEESCHHH
T ss_pred             CEEEEECCCCCHHHHHHHHCCCCEEEEEECCH--HHHHHHHHHHHHcCCCceEEEeccc--cccCCCCceEEEECCcHHH
Confidence            4899999999999999998865 788888652  2222    2222232  33333433  4456799999999876643


Q ss_pred             ccChhcHHHHHHHHHhcccCCcEEEEeeccCChhhHHHHHHHHHHcCceeeEEEEeeccCCCCcceeEEEEEEeCCC
Q 046488          400 WIDFVLLDFILYDWDRVLRPGGLLWIDSFFCAKEDMNDYLEVFKMLKYKKHKWVVVPKRDKDDREVFFSAVLEKPPR  476 (480)
Q Consensus       400 ~~d~~~l~~~L~EI~RVLKPGG~fiI~~f~~~~edL~~~~~~l~~lGfkkl~W~~~~k~d~~~~E~~lsav~qKP~~  476 (480)
                      +      ..++.++.|+|||||++++..+..  .+.+.+.+.++..||+.+.....       ++ +.+.+.++|.+
T Consensus       138 ~------~~~l~~~~~~L~~gG~l~~~~~~~--~~~~~~~~~~~~~Gf~~~~~~~~-------~~-w~~~~~~~~~~  198 (205)
T 3grz_A          138 L------LDLIPQLDSHLNEDGQVIFSGIDY--LQLPKIEQALAENSFQIDLKMRA-------GR-WIGLAISRKHE  198 (205)
T ss_dssp             H------HHHGGGSGGGEEEEEEEEEEEEEG--GGHHHHHHHHHHTTEEEEEEEEE-------TT-EEEEEEEECC-
T ss_pred             H------HHHHHHHHHhcCCCCEEEEEecCc--ccHHHHHHHHHHcCCceEEeecc-------CC-EEEEEEecccc
Confidence            2      468999999999999999976543  34566778889999987654321       23 33556666655

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0

Probab=99.30  E-value=4.5e-11  Score=109.77  Aligned_cols=120  Identities=13%  Similarity=0.067  Sum_probs=83.1

Q ss_pred             HhcCCCCCCCCeEEEECCCCcHHHHHHhhCC--CEEEEEecCCChhHHH----HHHHhCC--CCeeeecccCCCCCCCcc
Q 046488          317 EVLDIKPGEIRIGLDFSIGTGTFAARMREFN--VTLVSAIINLGAPFNE----MIALRGL--VPLYITINQRVPFFDNTL  388 (480)
Q Consensus       317 ~vL~l~~g~iR~VLDVGCGtG~fAa~Lae~g--V~Vv~vd~d~~~~~~~----~iA~rgl--ip~~~~~ae~LPFpd~SF  388 (480)
                      ..+.+.++  .+|||+|||+|.++..+++.+  ..+++++++.  .+..    .+...+.  +.+..++........++|
T Consensus        34 ~~l~~~~~--~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~--~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  109 (204)
T 3e05_A           34 SKLRLQDD--LVMWDIGAGSASVSIEASNLMPNGRIFALERNP--QYLGFIRDNLKKFVARNVTLVEAFAPEGLDDLPDP  109 (204)
T ss_dssp             HHTTCCTT--CEEEEETCTTCHHHHHHHHHCTTSEEEEEECCH--HHHHHHHHHHHHHTCTTEEEEECCTTTTCTTSCCC
T ss_pred             HHcCCCCC--CEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCH--HHHHHHHHHHHHhCCCcEEEEeCChhhhhhcCCCC
Confidence            44555555  489999999999999999876  7888888652  2222    2222232  334445543333344789


Q ss_pred             chheecccccCccChhcHHHHHHHHHhcccCCcEEEEeeccCChhhHHHHHHHHHHcCce
Q 046488          389 DLIHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDSFFCAKEDMNDYLEVFKMLKYK  448 (480)
Q Consensus       389 DlV~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~f~~~~edL~~~~~~l~~lGfk  448 (480)
                      |+|++...+.   +   ...++.++.|+|||||++++....  .+..+.+.+.+++.||.
T Consensus       110 D~i~~~~~~~---~---~~~~l~~~~~~LkpgG~l~~~~~~--~~~~~~~~~~l~~~g~~  161 (204)
T 3e05_A          110 DRVFIGGSGG---M---LEEIIDAVDRRLKSEGVIVLNAVT--LDTLTKAVEFLEDHGYM  161 (204)
T ss_dssp             SEEEESCCTT---C---HHHHHHHHHHHCCTTCEEEEEECB--HHHHHHHHHHHHHTTCE
T ss_pred             CEEEECCCCc---C---HHHHHHHHHHhcCCCeEEEEEecc--cccHHHHHHHHHHCCCc
Confidence            9999887664   2   256999999999999999986432  34456677888999983

>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=99.30  E-value=8.5e-13  Score=125.87  Aligned_cols=118  Identities=15%  Similarity=0.037  Sum_probs=74.9

Q ss_pred             CeEEEECCCCcHHHHHHhhCC-CEEEEEecCCChhHHHHHHHh----CCC--Ceeeeccc--CCCCCCCccchhee----
Q 046488          327 RIGLDFSIGTGTFAARMREFN-VTLVSAIINLGAPFNEMIALR----GLV--PLYITINQ--RVPFFDNTLDLIHT----  393 (480)
Q Consensus       327 R~VLDVGCGtG~fAa~Lae~g-V~Vv~vd~d~~~~~~~~iA~r----gli--p~~~~~ae--~LPFpd~SFDlV~s----  393 (480)
                      .+|||||||+|.++..+++++ ..+++++++  ..+. ..|++    ...  .+..+.++  ..++++++||.|+.    
T Consensus        62 ~rVLdiG~G~G~~~~~~~~~~~~~v~~id~~--~~~~-~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~FD~i~~D~~~  138 (236)
T 3orh_A           62 GRVLEVGFGMAIAASKVQEAPIDEHWIIECN--DGVF-QRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTYP  138 (236)
T ss_dssp             EEEEEECCTTSHHHHHHTTSCEEEEEEEECC--HHHH-HHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCCC
T ss_pred             CeEEEECCCccHHHHHHHHhCCcEEEEEeCC--HHHH-HHHHHHHhhCCCceEEEeehHHhhcccccccCCceEEEeeee
Confidence            489999999999999999874 456666655  2333 23322    222  22334433  34688999999874    


Q ss_pred             -cccccCccChhcHHHHHHHHHhcccCCcEEEEeeccCChh----------h--HHHHHHHHHHcCceee
Q 046488          394 -TRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDSFFCAKE----------D--MNDYLEVFKMLKYKKH  450 (480)
Q Consensus       394 -s~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~f~~~~e----------d--L~~~~~~l~~lGfkkl  450 (480)
                       ...+.|+.+.   ..++.|+.|||||||+|++.+.....+          .  .+.+...+.+.||+..
T Consensus       139 ~~~~~~~~~~~---~~~~~e~~rvLkPGG~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~eaGF~~~  205 (236)
T 3orh_A          139 LSEETWHTHQF---NFIKNHAFRLLKPGGVLTYCNLTSWGELMKSKYSDITIMFEETQVPALLEAGFRRE  205 (236)
T ss_dssp             CBGGGTTTHHH---HHHHHTHHHHEEEEEEEEECCHHHHHHHTTTTCSCHHHHHHHHTHHHHHHHTCCGG
T ss_pred             cccchhhhcch---hhhhhhhhheeCCCCEEEEEecCCchhhhhhhhhhhhhhhHHHHHHHHHHcCCeEE
Confidence             3444455444   579999999999999998864211110          1  1234456777899743

>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*

Probab=99.29  E-value=1.7e-11  Score=122.94  Aligned_cols=123  Identities=20%  Similarity=0.110  Sum_probs=84.9

Q ss_pred             CCeEEEECCCCcHHHHHHhhC--CCEEEEEecCCChhHHH----HHHHhC---CCCeeeecccCCCCCCCccchheeccc
Q 046488          326 IRIGLDFSIGTGTFAARMREF--NVTLVSAIINLGAPFNE----MIALRG---LVPLYITINQRVPFFDNTLDLIHTTRF  396 (480)
Q Consensus       326 iR~VLDVGCGtG~fAa~Lae~--gV~Vv~vd~d~~~~~~~----~iA~rg---lip~~~~~ae~LPFpd~SFDlV~ss~v  396 (480)
                      ..+|||||||+|.++..++++  +..++++|+   ..+..    .+...+   .+.+..++... +++. .||+|++..+
T Consensus       183 ~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~---~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~-~~D~v~~~~v  257 (374)
T 1qzz_A          183 VRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL---AGPAERARRRFADAGLADRVTVAEGDFFK-PLPV-TADVVLLSFV  257 (374)
T ss_dssp             CCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC---HHHHHHHHHHHHHTTCTTTEEEEECCTTS-CCSC-CEEEEEEESC
T ss_pred             CCEEEEECCCcCHHHHHHHHHCCCCEEEEEeC---HHHHHHHHHHHHhcCCCCceEEEeCCCCC-cCCC-CCCEEEEecc
Confidence            358999999999999999886  567777774   23322    222233   23444454332 3443 3999999999


Q ss_pred             ccCccChhcHHHHHHHHHhcccCCcEEEEeec--cCChh----------------------hHHHHHHHHHHcCceeeEE
Q 046488          397 LDGWIDFVLLDFILYDWDRVLRPGGLLWIDSF--FCAKE----------------------DMNDYLEVFKMLKYKKHKW  452 (480)
Q Consensus       397 L~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~f--~~~~e----------------------dL~~~~~~l~~lGfkkl~W  452 (480)
                      +++|.+... ..++.++.|+|||||+++|.++  ..+..                      ..+++.++++..||+.+.+
T Consensus       258 l~~~~~~~~-~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~~~~  336 (374)
T 1qzz_A          258 LLNWSDEDA-LTILRGCVRALEPGGRLLVLDRADVEGDGADRFFSTLLDLRMLTFMGGRVRTRDEVVDLAGSAGLALASE  336 (374)
T ss_dssp             GGGSCHHHH-HHHHHHHHHHEEEEEEEEEEECCH-------HHHHHHHHHHHHHHHSCCCCCHHHHHHHHHTTTEEEEEE
T ss_pred             ccCCCHHHH-HHHHHHHHHhcCCCcEEEEEechhhcCCCCCcchhhhcchHHHHhCCCcCCCHHHHHHHHHHCCCceEEE
Confidence            999976532 4699999999999999998766  32210                      2345778999999998765


Q ss_pred             EE
Q 046488          453 VV  454 (480)
Q Consensus       453 ~~  454 (480)
                      ..
T Consensus       337 ~~  338 (374)
T 1qzz_A          337 RT  338 (374)
T ss_dssp             EE
T ss_pred             EE
Confidence            44

>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=99.28  E-value=9.5e-12  Score=117.22  Aligned_cols=98  Identities=19%  Similarity=0.198  Sum_probs=71.3

Q ss_pred             CCeEEEECCCCcHHHHHHhhCCCEEEEEecCCChhHHHH----HHHhC-CCCeeeecccCCCCCCCccchheecccccCc
Q 046488          326 IRIGLDFSIGTGTFAARMREFNVTLVSAIINLGAPFNEM----IALRG-LVPLYITINQRVPFFDNTLDLIHTTRFLDGW  400 (480)
Q Consensus       326 iR~VLDVGCGtG~fAa~Lae~gV~Vv~vd~d~~~~~~~~----iA~rg-lip~~~~~ae~LPFpd~SFDlV~ss~vL~h~  400 (480)
                      ..+|||+|||+|.++..|+++|..+++++++.  .+...    ....+ .+.+..++...++++ ++||+|++.....++
T Consensus        42 ~~~vLDlGcG~G~~~~~l~~~~~~v~gvD~s~--~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~v~~~~~~~~~  118 (252)
T 1wzn_A           42 VRRVLDLACGTGIPTLELAERGYEVVGLDLHE--EMLRVARRKAKERNLKIEFLQGDVLEIAFK-NEFDAVTMFFSTIMY  118 (252)
T ss_dssp             CCEEEEETCTTCHHHHHHHHTTCEEEEEESCH--HHHHHHHHHHHHTTCCCEEEESCGGGCCCC-SCEEEEEECSSGGGG
T ss_pred             CCEEEEeCCCCCHHHHHHHHCCCeEEEEECCH--HHHHHHHHHHHhcCCceEEEECChhhcccC-CCccEEEEcCCchhc
Confidence            35899999999999999999999999988752  23222    22222 244556667777765 789999986543333


Q ss_pred             cChhcHHHHHHHHHhcccCCcEEEEe
Q 046488          401 IDFVLLDFILYDWDRVLRPGGLLWID  426 (480)
Q Consensus       401 ~d~~~l~~~L~EI~RVLKPGG~fiI~  426 (480)
                      .+......++.++.|+|||||++++.
T Consensus       119 ~~~~~~~~~l~~~~~~L~pgG~li~~  144 (252)
T 1wzn_A          119 FDEEDLRKLFSKVAEALKPGGVFITD  144 (252)
T ss_dssp             SCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             CCHHHHHHHHHHHHHHcCCCeEEEEe
Confidence            33334478999999999999999874

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}

Probab=99.28  E-value=5.4e-11  Score=110.98  Aligned_cols=127  Identities=10%  Similarity=-0.058  Sum_probs=87.2

Q ss_pred             HHHhcCCCCCCCCeEEEECCCCcHHHHHHhhCCCEEEEEecCCChhHHHH----HHHhCC---CCeeeecccCCCCCCCc
Q 046488          315 IPEVLDIKPGEIRIGLDFSIGTGTFAARMREFNVTLVSAIINLGAPFNEM----IALRGL---VPLYITINQRVPFFDNT  387 (480)
Q Consensus       315 I~~vL~l~~g~iR~VLDVGCGtG~fAa~Lae~gV~Vv~vd~d~~~~~~~~----iA~rgl---ip~~~~~ae~LPFpd~S  387 (480)
                      +-..+.+.++  .+|||+|||+|.++..+++++..+++++++.  .+...    ++..+.   +.+..+++.........
T Consensus        47 ~l~~l~~~~~--~~vLDlGcG~G~~~~~la~~~~~v~~vD~s~--~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~  122 (204)
T 3njr_A           47 TLAALAPRRG--ELLWDIGGGSGSVSVEWCLAGGRAITIEPRA--DRIENIQKNIDTYGLSPRMRAVQGTAPAALADLPL  122 (204)
T ss_dssp             HHHHHCCCTT--CEEEEETCTTCHHHHHHHHTTCEEEEEESCH--HHHHHHHHHHHHTTCTTTEEEEESCTTGGGTTSCC
T ss_pred             HHHhcCCCCC--CEEEEecCCCCHHHHHHHHcCCEEEEEeCCH--HHHHHHHHHHHHcCCCCCEEEEeCchhhhcccCCC
Confidence            3345556555  4899999999999999999888899988763  22221    222222   33445555553223467


Q ss_pred             cchheecccccCccChhcHHHHHHHHHhcccCCcEEEEeeccCChhhHHHHHHHHHHcCceeeEEEEe
Q 046488          388 LDLIHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDSFFCAKEDMNDYLEVFKMLKYKKHKWVVV  455 (480)
Q Consensus       388 FDlV~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~f~~~~edL~~~~~~l~~lGfkkl~W~~~  455 (480)
                      ||+|++...+    +   .. ++.++.|+|||||++++....  .+++..+.+.++..|++...+...
T Consensus       123 ~D~v~~~~~~----~---~~-~l~~~~~~LkpgG~lv~~~~~--~~~~~~~~~~l~~~g~~i~~i~~~  180 (204)
T 3njr_A          123 PEAVFIGGGG----S---QA-LYDRLWEWLAPGTRIVANAVT--LESETLLTQLHARHGGQLLRIDIA  180 (204)
T ss_dssp             CSEEEECSCC----C---HH-HHHHHHHHSCTTCEEEEEECS--HHHHHHHHHHHHHHCSEEEEEEEE
T ss_pred             CCEEEECCcc----c---HH-HHHHHHHhcCCCcEEEEEecC--cccHHHHHHHHHhCCCcEEEEEee
Confidence            9999986643    2   25 899999999999999986432  455667778888889876665554

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*

Probab=99.28  E-value=3.6e-11  Score=107.04  Aligned_cols=120  Identities=16%  Similarity=0.149  Sum_probs=81.9

Q ss_pred             HHhcCCCCCCCCeEEEECCCCcHHHHHHhhCCCEEEEEecCCChhHHH----HHHHhCC---CCeeeecccCCCCCC-Cc
Q 046488          316 PEVLDIKPGEIRIGLDFSIGTGTFAARMREFNVTLVSAIINLGAPFNE----MIALRGL---VPLYITINQRVPFFD-NT  387 (480)
Q Consensus       316 ~~vL~l~~g~iR~VLDVGCGtG~fAa~Lae~gV~Vv~vd~d~~~~~~~----~iA~rgl---ip~~~~~ae~LPFpd-~S  387 (480)
                      .+.+.+.++  .+|||+|||+|.++..+++.+..+++++.+.  .+..    .+...+.   +.+..++... ++++ ++
T Consensus        26 ~~~~~~~~~--~~vldiG~G~G~~~~~l~~~~~~v~~~D~~~--~~~~~a~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~  100 (192)
T 1l3i_A           26 MCLAEPGKN--DVAVDVGCGTGGVTLELAGRVRRVYAIDRNP--EAISTTEMNLQRHGLGDNVTLMEGDAPE-ALCKIPD  100 (192)
T ss_dssp             HHHHCCCTT--CEEEEESCTTSHHHHHHHTTSSEEEEEESCH--HHHHHHHHHHHHTTCCTTEEEEESCHHH-HHTTSCC
T ss_pred             HHhcCCCCC--CEEEEECCCCCHHHHHHHHhcCEEEEEECCH--HHHHHHHHHHHHcCCCcceEEEecCHHH-hcccCCC
Confidence            344555555  4899999999999999998877888888652  2222    1222222   2333344333 3333 58


Q ss_pred             cchheecccccCccChhcHHHHHHHHHhcccCCcEEEEeeccCChhhHHHHHHHHHHcCce
Q 046488          388 LDLIHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDSFFCAKEDMNDYLEVFKMLKYK  448 (480)
Q Consensus       388 FDlV~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~f~~~~edL~~~~~~l~~lGfk  448 (480)
                      ||+|++...++++      ..++.++.|+|||||++++..+.  .+....+.+.++..||.
T Consensus       101 ~D~v~~~~~~~~~------~~~l~~~~~~l~~gG~l~~~~~~--~~~~~~~~~~l~~~g~~  153 (192)
T 1l3i_A          101 IDIAVVGGSGGEL------QEILRIIKDKLKPGGRIIVTAIL--LETKFEAMECLRDLGFD  153 (192)
T ss_dssp             EEEEEESCCTTCH------HHHHHHHHHTEEEEEEEEEEECB--HHHHHHHHHHHHHTTCC
T ss_pred             CCEEEECCchHHH------HHHHHHHHHhcCCCcEEEEEecC--cchHHHHHHHHHHCCCc
Confidence            9999998776432      46899999999999999886543  34556677888999983

>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0

Probab=99.27  E-value=1.4e-11  Score=114.40  Aligned_cols=138  Identities=13%  Similarity=0.150  Sum_probs=88.3

Q ss_pred             CeEEEECCCCcHHHHHHhhCCCEEEEEecCCChhHHHHHHHhCCCCeeeecccCCCCC-------C----Cccchheecc
Q 046488          327 RIGLDFSIGTGTFAARMREFNVTLVSAIINLGAPFNEMIALRGLVPLYITINQRVPFF-------D----NTLDLIHTTR  395 (480)
Q Consensus       327 R~VLDVGCGtG~fAa~Lae~gV~Vv~vd~d~~~~~~~~iA~rglip~~~~~ae~LPFp-------d----~SFDlV~ss~  395 (480)
                      .+|||+|||+|.++..+++++..++++|++...+       ...+.+..++....+..       .    ++||+|+|..
T Consensus        27 ~~VLDlG~G~G~~s~~la~~~~~V~gvD~~~~~~-------~~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~D~Vlsd~   99 (191)
T 3dou_A           27 DAVIEIGSSPGGWTQVLNSLARKIISIDLQEMEE-------IAGVRFIRCDIFKETIFDDIDRALREEGIEKVDDVVSDA   99 (191)
T ss_dssp             CEEEEESCTTCHHHHHHTTTCSEEEEEESSCCCC-------CTTCEEEECCTTSSSHHHHHHHHHHHHTCSSEEEEEECC
T ss_pred             CEEEEEeecCCHHHHHHHHcCCcEEEEecccccc-------CCCeEEEEccccCHHHHHHHHHHhhcccCCcceEEecCC
Confidence            4899999999999999999988899998764211       11344555665554421       1    4999999864


Q ss_pred             cccC---c-cC----hhcHHHHHHHHHhcccCCcEEEEeeccCChhhHHHHHHHHHHcCceeeEEEEeeccCCCCcceeE
Q 046488          396 FLDG---W-ID----FVLLDFILYDWDRVLRPGGLLWIDSFFCAKEDMNDYLEVFKMLKYKKHKWVVVPKRDKDDREVFF  467 (480)
Q Consensus       396 vL~h---~-~d----~~~l~~~L~EI~RVLKPGG~fiI~~f~~~~edL~~~~~~l~~lGfkkl~W~~~~k~d~~~~E~~l  467 (480)
                      ....   + .+    ......++.++.|+|||||.|++..|....  ...+...++. .|.++.+...........|.|+
T Consensus       100 ~~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k~~~~~~--~~~~~~~l~~-~F~~v~~~kP~asR~~s~E~y~  176 (191)
T 3dou_A          100 MAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLLKQFQGDM--TNDFIAIWRK-NFSSYKISKPPASRGSSSEIYI  176 (191)
T ss_dssp             CCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECSTH--HHHHHHHHGG-GEEEEEEECC------CCEEEE
T ss_pred             CcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEcCCCC--HHHHHHHHHH-hcCEEEEECCCCccCCCceEEE
Confidence            3211   1 01    111246899999999999999987765443  3345555554 3777765443222225689999


Q ss_pred             EEEEEeC
Q 046488          468 SAVLEKP  474 (480)
Q Consensus       468 sav~qKP  474 (480)
                      .+.-.|.
T Consensus       177 v~~~~~~  183 (191)
T 3dou_A          177 MFFGFKA  183 (191)
T ss_dssp             EEEEECC
T ss_pred             EEeeecc
Confidence            8766554

>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4

Probab=99.27  E-value=4e-11  Score=106.86  Aligned_cols=127  Identities=17%  Similarity=0.142  Sum_probs=82.2

Q ss_pred             HhcCCCCCCCCeEEEECCCCcHHHHHHhhCCCEEEEEecCCCh--hHHHHHHHhCC----CCeeeecccCCCCCCCccch
Q 046488          317 EVLDIKPGEIRIGLDFSIGTGTFAARMREFNVTLVSAIINLGA--PFNEMIALRGL----VPLYITINQRVPFFDNTLDL  390 (480)
Q Consensus       317 ~vL~l~~g~iR~VLDVGCGtG~fAa~Lae~gV~Vv~vd~d~~~--~~~~~iA~rgl----ip~~~~~ae~LPFpd~SFDl  390 (480)
                      +.+...++  .+|||+|||+|.++..+++.+..+++++++...  .+...+...+.    +.+..++... ++++++||+
T Consensus        46 ~~~~~~~~--~~vLdiG~G~G~~~~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~D~  122 (194)
T 1dus_A           46 ENVVVDKD--DDILDLGCGYGVIGIALADEVKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYE-NVKDRKYNK  122 (194)
T ss_dssp             HHCCCCTT--CEEEEETCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTT-TCTTSCEEE
T ss_pred             HHcccCCC--CeEEEeCCCCCHHHHHHHHcCCeEEEEECCHHHHHHHHHHHHHcCCCccceEEEECchhc-ccccCCceE
Confidence            44455444  489999999999999999888888888876311  11112222232    3334444443 445789999


Q ss_pred             heecccccCccChhcHHHHHHHHHhcccCCcEEEEeeccCChhhHHHHHHHHHHcCceeeE
Q 046488          391 IHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDSFFCAKEDMNDYLEVFKMLKYKKHK  451 (480)
Q Consensus       391 V~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~f~~~~edL~~~~~~l~~lGfkkl~  451 (480)
                      |++...+++..  ..+..++.++.|+|||||++++..+..  .....+.+.+++. |..+.
T Consensus       123 v~~~~~~~~~~--~~~~~~l~~~~~~L~~gG~l~~~~~~~--~~~~~~~~~l~~~-~~~~~  178 (194)
T 1dus_A          123 IITNPPIRAGK--EVLHRIIEEGKELLKDNGEIWVVIQTK--QGAKSLAKYMKDV-FGNVE  178 (194)
T ss_dssp             EEECCCSTTCH--HHHHHHHHHHHHHEEEEEEEEEEEEST--HHHHHHHHHHHHH-HSCCE
T ss_pred             EEECCCcccch--hHHHHHHHHHHHHcCCCCEEEEEECCC--CChHHHHHHHHHH-hcceE
Confidence            99987765422  223679999999999999999976543  2233355555554 54444

>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*

Probab=99.27  E-value=3.7e-11  Score=120.54  Aligned_cols=125  Identities=19%  Similarity=0.204  Sum_probs=88.6

Q ss_pred             CCeEEEECCCCcHHHHHHhhC--CCEEEEEecCCC--hhHHHHHHHhCC---CCeeeecccCCCCCCCccchheeccccc
Q 046488          326 IRIGLDFSIGTGTFAARMREF--NVTLVSAIINLG--APFNEMIALRGL---VPLYITINQRVPFFDNTLDLIHTTRFLD  398 (480)
Q Consensus       326 iR~VLDVGCGtG~fAa~Lae~--gV~Vv~vd~d~~--~~~~~~iA~rgl---ip~~~~~ae~LPFpd~SFDlV~ss~vL~  398 (480)
                      ..+|||||||+|.++..++++  +..++++|+ ..  ..+...++..+.   +.+..++....|+++.  |+|++..+++
T Consensus       191 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~--D~v~~~~vlh  267 (359)
T 1x19_A          191 VKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESYPEA--DAVLFCRILY  267 (359)
T ss_dssp             CCEEEEESCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTCTTTEEEEECCTTTSCCCCC--SEEEEESCGG
T ss_pred             CCEEEEECCcccHHHHHHHHHCCCCeEEEEec-HHHHHHHHHHHHhcCCCCCEEEEeCccccCCCCCC--CEEEEechhc
Confidence            358999999999999999886  567777775 21  112222222232   4455566666677665  9999999999


Q ss_pred             CccChhcHHHHHHHHHhcccCCcEEEEeeccCC-------------------h------hhHHHHHHHHHHcCceeeEEE
Q 046488          399 GWIDFVLLDFILYDWDRVLRPGGLLWIDSFFCA-------------------K------EDMNDYLEVFKMLKYKKHKWV  453 (480)
Q Consensus       399 h~~d~~~l~~~L~EI~RVLKPGG~fiI~~f~~~-------------------~------edL~~~~~~l~~lGfkkl~W~  453 (480)
                      +|.+.. ...++.++.|+|||||+++|.++...                   .      -..++|.+++++.||+.+.+.
T Consensus       268 ~~~d~~-~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~t~~e~~~ll~~aGf~~v~~~  346 (359)
T 1x19_A          268 SANEQL-STIMCKKAFDAMRSGGRLLILDMVIDDPENPNFDYLSHYILGAGMPFSVLGFKEQARYKEILESLGYKDVTMV  346 (359)
T ss_dssp             GSCHHH-HHHHHHHHHTTCCTTCEEEEEEECCCCTTSCCHHHHHHHGGGGGSSCCCCCCCCGGGHHHHHHHHTCEEEEEE
T ss_pred             cCCHHH-HHHHHHHHHHhcCCCCEEEEEecccCCCCCchHHHHHHHHHhcCCCCcccCCCCHHHHHHHHHHCCCceEEEE
Confidence            997643 26799999999999999988653211                   1      123467889999999987754


Q ss_pred             E
Q 046488          454 V  454 (480)
Q Consensus       454 ~  454 (480)
                      .
T Consensus       347 ~  347 (359)
T 1x19_A          347 R  347 (359)
T ss_dssp             E
T ss_pred             e
Confidence            4

>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*

Probab=99.26  E-value=2.1e-11  Score=120.91  Aligned_cols=123  Identities=12%  Similarity=0.073  Sum_probs=86.9

Q ss_pred             CCCeEEEECCCCcHHHHHHhhC--CCEEEEEecCCChhHHH----HHHHhCC---CCeeeecccCCCCCCCccchheecc
Q 046488          325 EIRIGLDFSIGTGTFAARMREF--NVTLVSAIINLGAPFNE----MIALRGL---VPLYITINQRVPFFDNTLDLIHTTR  395 (480)
Q Consensus       325 ~iR~VLDVGCGtG~fAa~Lae~--gV~Vv~vd~d~~~~~~~----~iA~rgl---ip~~~~~ae~LPFpd~SFDlV~ss~  395 (480)
                      ...+|||||||+|.++..++++  +..++++|+   ..+..    .+...+.   +.+..++.. .|++. +||+|++..
T Consensus       169 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~---~~~~~~a~~~~~~~~~~~~v~~~~~d~~-~~~p~-~~D~v~~~~  243 (332)
T 3i53_A          169 ALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDL---QGPASAAHRRFLDTGLSGRAQVVVGSFF-DPLPA-GAGGYVLSA  243 (332)
T ss_dssp             GGSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC---HHHHHHHHHHHHHTTCTTTEEEEECCTT-SCCCC-SCSEEEEES
T ss_pred             CCCEEEEeCCChhHHHHHHHHHCCCCeEEEecC---HHHHHHHHHhhhhcCcCcCeEEecCCCC-CCCCC-CCcEEEEeh
Confidence            3468999999999999999875  566777664   22222    2222232   444445543 35555 899999999


Q ss_pred             cccCccChhcHHHHHHHHHhcccCCcEEEEeeccCChh-------------------hHHHHHHHHHHcCceeeEEE
Q 046488          396 FLDGWIDFVLLDFILYDWDRVLRPGGLLWIDSFFCAKE-------------------DMNDYLEVFKMLKYKKHKWV  453 (480)
Q Consensus       396 vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~f~~~~e-------------------dL~~~~~~l~~lGfkkl~W~  453 (480)
                      ++++|.++.. ..++.+++|+|||||+++|.++.....                   ..++|.++++..||+.+...
T Consensus       244 vlh~~~~~~~-~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~  319 (332)
T 3i53_A          244 VLHDWDDLSA-VAILRRCAEAAGSGGVVLVIEAVAGDEHAGTGMDLRMLTYFGGKERSLAELGELAAQAGLAVRAAH  319 (332)
T ss_dssp             CGGGSCHHHH-HHHHHHHHHHHTTTCEEEEEECCCC---CCHHHHHHHHHHHSCCCCCHHHHHHHHHHTTEEEEEEE
T ss_pred             hhccCCHHHH-HHHHHHHHHhcCCCCEEEEEeecCCCCCccHHHHHHHHhhCCCCCCCHHHHHHHHHHCCCEEEEEE
Confidence            9999987632 679999999999999999876433220                   13468889999999987644

>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}

Probab=99.26  E-value=3.9e-12  Score=126.59  Aligned_cols=98  Identities=12%  Similarity=0.012  Sum_probs=66.4

Q ss_pred             CeEEEECCCCcHHHHHHhhC-CCEEEEEecCCChhHHHHH----HHhCC--------CCeeeecc------cCC--CCCC
Q 046488          327 RIGLDFSIGTGTFAARMREF-NVTLVSAIINLGAPFNEMI----ALRGL--------VPLYITIN------QRV--PFFD  385 (480)
Q Consensus       327 R~VLDVGCGtG~fAa~Lae~-gV~Vv~vd~d~~~~~~~~i----A~rgl--------ip~~~~~a------e~L--PFpd  385 (480)
                      .+|||||||+|..+..++.. +..++++|++.  .+...+    ...+.        +.+.+.++      +.|  ++++
T Consensus        50 ~~VLDlGCG~G~~l~~~~~~~~~~v~GiD~S~--~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~~~  127 (302)
T 2vdw_A           50 RKVLAIDFGNGADLEKYFYGEIALLVATDPDA--DAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVFYF  127 (302)
T ss_dssp             CEEEETTCTTTTTHHHHHHTTCSEEEEEESCH--HHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHTTCCS
T ss_pred             CeEEEEecCCcHhHHHHHhcCCCeEEEEECCH--HHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhccccC
Confidence            58999999999866655554 46888888763  333222    11221        11223322      333  4778


Q ss_pred             CccchheecccccCccChhcHHHHHHHHHhcccCCcEEEEe
Q 046488          386 NTLDLIHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWID  426 (480)
Q Consensus       386 ~SFDlV~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~  426 (480)
                      ++||+|+|..++++..+......++.++.|+|||||+|++.
T Consensus       128 ~~FD~V~~~~~lhy~~~~~~~~~~l~~~~r~LkpGG~~i~~  168 (302)
T 2vdw_A          128 GKFNIIDWQFAIHYSFHPRHYATVMNNLSELTASGGKVLIT  168 (302)
T ss_dssp             SCEEEEEEESCGGGTCSTTTHHHHHHHHHHHEEEEEEEEEE
T ss_pred             CCeeEEEECchHHHhCCHHHHHHHHHHHHHHcCCCCEEEEE
Confidence            99999999999876433223468999999999999999886

>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}

Probab=99.25  E-value=2e-11  Score=120.16  Aligned_cols=104  Identities=9%  Similarity=0.005  Sum_probs=74.2

Q ss_pred             HhcCCCCCCCCeEEEECCCCcHHHHHHhhCCCEEEEEecCCChhHHHHHHHhCCCCeeeecccCCCC-----CCCccchh
Q 046488          317 EVLDIKPGEIRIGLDFSIGTGTFAARMREFNVTLVSAIINLGAPFNEMIALRGLVPLYITINQRVPF-----FDNTLDLI  391 (480)
Q Consensus       317 ~vL~l~~g~iR~VLDVGCGtG~fAa~Lae~gV~Vv~vd~d~~~~~~~~iA~rglip~~~~~ae~LPF-----pd~SFDlV  391 (480)
                      +.+++.++  .+|||||||+|.++..|++++..|++++++  ..+...+..+-.........+.++.     .+++||+|
T Consensus        39 ~~l~l~~g--~~VLDlGcGtG~~a~~La~~g~~V~gvD~S--~~ml~~Ar~~~~~~~v~~~~~~~~~~~~~~~~~~fD~V  114 (261)
T 3iv6_A           39 FLENIVPG--STVAVIGASTRFLIEKALERGASVTVFDFS--QRMCDDLAEALADRCVTIDLLDITAEIPKELAGHFDFV  114 (261)
T ss_dssp             HTTTCCTT--CEEEEECTTCHHHHHHHHHTTCEEEEEESC--HHHHHHHHHHTSSSCCEEEECCTTSCCCGGGTTCCSEE
T ss_pred             HhcCCCCc--CEEEEEeCcchHHHHHHHhcCCEEEEEECC--HHHHHHHHHHHHhccceeeeeecccccccccCCCccEE
Confidence            34455555  489999999999999999999999998865  2343333222111122233333333     36799999


Q ss_pred             eecccccCccChhcHHHHHHHHHhcccCCcEEEEe
Q 046488          392 HTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWID  426 (480)
Q Consensus       392 ~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~  426 (480)
                      ++..+++|+...+ +..++.++.|+| |||.++++
T Consensus       115 v~~~~l~~~~~~~-~~~~l~~l~~lL-PGG~l~lS  147 (261)
T 3iv6_A          115 LNDRLINRFTTEE-ARRACLGMLSLV-GSGTVRAS  147 (261)
T ss_dssp             EEESCGGGSCHHH-HHHHHHHHHHHH-TTSEEEEE
T ss_pred             EEhhhhHhCCHHH-HHHHHHHHHHhC-cCcEEEEE
Confidence            9999999886543 367999999999 99999987

>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*

Probab=99.25  E-value=5e-11  Score=119.06  Aligned_cols=132  Identities=20%  Similarity=0.123  Sum_probs=88.3

Q ss_pred             hcCCCCCCCCeEEEECCCCcHHHHHHhhC--CCEEEEEec-CCChhHHHHHHHhCC---CCeeeecccCCCCCCCccchh
Q 046488          318 VLDIKPGEIRIGLDFSIGTGTFAARMREF--NVTLVSAII-NLGAPFNEMIALRGL---VPLYITINQRVPFFDNTLDLI  391 (480)
Q Consensus       318 vL~l~~g~iR~VLDVGCGtG~fAa~Lae~--gV~Vv~vd~-d~~~~~~~~iA~rgl---ip~~~~~ae~LPFpd~SFDlV  391 (480)
                      .+++.++  .+|||||||+|.++..++++  ++.++++++ .....+...+...+.   +.+..++... +++. .||+|
T Consensus       178 ~~~~~~~--~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~-~~D~v  253 (360)
T 1tw3_A          178 AYDWTNV--RHVLDVGGGKGGFAAAIARRAPHVSATVLEMAGTVDTARSYLKDEGLSDRVDVVEGDFFE-PLPR-KADAI  253 (360)
T ss_dssp             HSCCTTC--SEEEEETCTTSHHHHHHHHHCTTCEEEEEECTTHHHHHHHHHHHTTCTTTEEEEECCTTS-CCSS-CEEEE
T ss_pred             hCCCccC--cEEEEeCCcCcHHHHHHHHhCCCCEEEEecCHHHHHHHHHHHHhcCCCCceEEEeCCCCC-CCCC-CccEE
Confidence            3444433  58999999999999999876  567777774 111112222233332   3444454332 3444 39999


Q ss_pred             eecccccCccChhcHHHHHHHHHhcccCCcEEEEeecc-CChh----------------------hHHHHHHHHHHcCce
Q 046488          392 HTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDSFF-CAKE----------------------DMNDYLEVFKMLKYK  448 (480)
Q Consensus       392 ~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~f~-~~~e----------------------dL~~~~~~l~~lGfk  448 (480)
                      ++..++++|.+... ..++.++.|+|||||++++.++. .+..                      ..++|.++++..||+
T Consensus       254 ~~~~vl~~~~~~~~-~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~  332 (360)
T 1tw3_A          254 ILSFVLLNWPDHDA-VRILTRCAEALEPGGRILIHERDDLHENSFNEQFTELDLRMLVFLGGALRTREKWDGLAASAGLV  332 (360)
T ss_dssp             EEESCGGGSCHHHH-HHHHHHHHHTEEEEEEEEEEECCBCGGGCCSHHHHHHHHHHHHHHSCCCCBHHHHHHHHHHTTEE
T ss_pred             EEcccccCCCHHHH-HHHHHHHHHhcCCCcEEEEEEEeccCCCCCcchhhhccHHHhhhcCCcCCCHHHHHHHHHHCCCe
Confidence            99999999976532 46999999999999999987654 2110                      124577899999999


Q ss_pred             eeEEEE
Q 046488          449 KHKWVV  454 (480)
Q Consensus       449 kl~W~~  454 (480)
                      .+.+..
T Consensus       333 ~~~~~~  338 (360)
T 1tw3_A          333 VEEVRQ  338 (360)
T ss_dssp             EEEEEE
T ss_pred             EEEEEe
Confidence            876544

>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}

Probab=99.25  E-value=1e-10  Score=112.29  Aligned_cols=141  Identities=11%  Similarity=0.129  Sum_probs=90.4

Q ss_pred             CCchhhh-hHHHhcCCC-CCCCCeEEEECCCCcHHHHHHhhCCC-EEEEEecCCChhHHH----HHHHhCC---CCeeee
Q 046488          307 TNLTADF-LIPEVLDIK-PGEIRIGLDFSIGTGTFAARMREFNV-TLVSAIINLGAPFNE----MIALRGL---VPLYIT  376 (480)
Q Consensus       307 ~~~~ad~-~I~~vL~l~-~g~iR~VLDVGCGtG~fAa~Lae~gV-~Vv~vd~d~~~~~~~----~iA~rgl---ip~~~~  376 (480)
                      +..+.|. ++...+.+. ++  .+|||+|||+|.++..+++++. .+++++++.  .+..    .+...+.   +.++.+
T Consensus        31 ~~~~~d~~ll~~~~~~~~~~--~~vLDlG~G~G~~~~~la~~~~~~v~gvDi~~--~~~~~a~~n~~~~~~~~~v~~~~~  106 (259)
T 3lpm_A           31 FSFSIDAVLLAKFSYLPIRK--GKIIDLCSGNGIIPLLLSTRTKAKIVGVEIQE--RLADMAKRSVAYNQLEDQIEIIEY  106 (259)
T ss_dssp             BCCCHHHHHHHHHCCCCSSC--CEEEETTCTTTHHHHHHHTTCCCEEEEECCSH--HHHHHHHHHHHHTTCTTTEEEECS
T ss_pred             ccCcHHHHHHHHHhcCCCCC--CEEEEcCCchhHHHHHHHHhcCCcEEEEECCH--HHHHHHHHHHHHCCCcccEEEEEC
Confidence            4444554 344555555 44  4899999999999999998854 788887652  2222    2222232   344555


Q ss_pred             cccCCC--CCCCccchheecccccCc-----c------------ChhcHHHHHHHHHhcccCCcEEEEeeccCChhhHHH
Q 046488          377 INQRVP--FFDNTLDLIHTTRFLDGW-----I------------DFVLLDFILYDWDRVLRPGGLLWIDSFFCAKEDMND  437 (480)
Q Consensus       377 ~ae~LP--Fpd~SFDlV~ss~vL~h~-----~------------d~~~l~~~L~EI~RVLKPGG~fiI~~f~~~~edL~~  437 (480)
                      ++..++  +++++||+|+++-.+...     .            ....+..++.++.|+|||||++++..   ..+.+.+
T Consensus       107 D~~~~~~~~~~~~fD~Ii~npPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~---~~~~~~~  183 (259)
T 3lpm_A          107 DLKKITDLIPKERADIVTCNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANFVH---RPERLLD  183 (259)
T ss_dssp             CGGGGGGTSCTTCEEEEEECCCC-----------------------HHHHHHHHHHHHHEEEEEEEEEEE---CTTTHHH
T ss_pred             cHHHhhhhhccCCccEEEECCCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEEEE---cHHHHHH
Confidence            555554  568999999996333211     0            11234579999999999999999842   3345566


Q ss_pred             HHHHHHHcCceeeEEEE
Q 046488          438 YLEVFKMLKYKKHKWVV  454 (480)
Q Consensus       438 ~~~~l~~lGfkkl~W~~  454 (480)
                      +...++..||.......
T Consensus       184 ~~~~l~~~~~~~~~~~~  200 (259)
T 3lpm_A          184 IIDIMRKYRLEPKRIQF  200 (259)
T ss_dssp             HHHHHHHTTEEEEEEEE
T ss_pred             HHHHHHHCCCceEEEEE
Confidence            77788888887665443

>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}

Probab=99.25  E-value=4.2e-11  Score=109.05  Aligned_cols=138  Identities=14%  Similarity=0.145  Sum_probs=86.1

Q ss_pred             CCCCCCCeEEEECCCCcHHHHHHhhC----CCEEEEEecCCChhHHHHHHHhCCCCeeeecccCCC--------------
Q 046488          321 IKPGEIRIGLDFSIGTGTFAARMREF----NVTLVSAIINLGAPFNEMIALRGLVPLYITINQRVP--------------  382 (480)
Q Consensus       321 l~~g~iR~VLDVGCGtG~fAa~Lae~----gV~Vv~vd~d~~~~~~~~iA~rglip~~~~~ae~LP--------------  382 (480)
                      +.++  .+|||+|||+|.++..++++    +..+++++++....       ...+.+..++...++              
T Consensus        20 ~~~~--~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~~-------~~~v~~~~~d~~~~~~~~~~~~~~i~~~~   90 (201)
T 2plw_A           20 LKKN--KIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMDP-------IPNVYFIQGEIGKDNMNNIKNINYIDNMN   90 (201)
T ss_dssp             CCTT--EEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCCC-------CTTCEEEECCTTTTSSCCC----------
T ss_pred             CCCC--CEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccCC-------CCCceEEEccccchhhhhhcccccccccc
Confidence            3444  48999999999999999876    36788888764211       112444555555555              


Q ss_pred             -----------CCCCccchheecccccCcc----Chh----cHHHHHHHHHhcccCCcEEEEeeccCChhhHHHHHHHHH
Q 046488          383 -----------FFDNTLDLIHTTRFLDGWI----DFV----LLDFILYDWDRVLRPGGLLWIDSFFCAKEDMNDYLEVFK  443 (480)
Q Consensus       383 -----------Fpd~SFDlV~ss~vL~h~~----d~~----~l~~~L~EI~RVLKPGG~fiI~~f~~~~edL~~~~~~l~  443 (480)
                                 +++++||+|++..++++..    +..    ....++.++.|+|||||+|++..+..  ++...+...++
T Consensus        91 ~~~~~~~~~~~~~~~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~--~~~~~l~~~l~  168 (201)
T 2plw_A           91 NNSVDYKLKEILQDKKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINIGGTYIVKMYLG--SQTNNLKTYLK  168 (201)
T ss_dssp             -CHHHHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECS--TTHHHHHHHHH
T ss_pred             chhhHHHHHhhcCCCcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEeCC--CCHHHHHHHHH
Confidence                       6788999999977654321    111    01247899999999999999866543  23344455555


Q ss_pred             HcCceeeEEEEeeccCCCCcceeEEEE
Q 046488          444 MLKYKKHKWVVVPKRDKDDREVFFSAV  470 (480)
Q Consensus       444 ~lGfkkl~W~~~~k~d~~~~E~~lsav  470 (480)
                      . .|..+.+...........|.|+.+.
T Consensus       169 ~-~f~~v~~~~~~~~r~~s~e~y~v~~  194 (201)
T 2plw_A          169 G-MFQLVHTTKPKASRNESREIYLVCK  194 (201)
T ss_dssp             T-TEEEEEECCCC-----CCEEEEEEE
T ss_pred             H-HHheEEEECCcccCCcCceEEEEEe
Confidence            5 3666554322111114568887654

>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}

Probab=99.25  E-value=9e-12  Score=117.13  Aligned_cols=101  Identities=11%  Similarity=-0.027  Sum_probs=73.0

Q ss_pred             CeEEEECCCCcHHHHHHhhCCCEEEEEecCCChhHHHHHHHhC---CCCeeeecccCCCCCC-----Cccchheeccccc
Q 046488          327 RIGLDFSIGTGTFAARMREFNVTLVSAIINLGAPFNEMIALRG---LVPLYITINQRVPFFD-----NTLDLIHTTRFLD  398 (480)
Q Consensus       327 R~VLDVGCGtG~fAa~Lae~gV~Vv~vd~d~~~~~~~~iA~rg---lip~~~~~ae~LPFpd-----~SFDlV~ss~vL~  398 (480)
                      .+|||+|||+|.++..|++.+..+++++++.  .+......+.   .+.+..++...+++..     ..||+|++..+++
T Consensus        58 ~~vLD~GcG~G~~~~~la~~~~~v~gvD~s~--~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~d~v~~~~~~~  135 (245)
T 3ggd_A           58 LPLIDFACGNGTQTKFLSQFFPRVIGLDVSK--SALEIAAKENTAANISYRLLDGLVPEQAAQIHSEIGDANIYMRTGFH  135 (245)
T ss_dssp             SCEEEETCTTSHHHHHHHHHSSCEEEEESCH--HHHHHHHHHSCCTTEEEEECCTTCHHHHHHHHHHHCSCEEEEESSST
T ss_pred             CeEEEEcCCCCHHHHHHHHhCCCEEEEECCH--HHHHHHHHhCcccCceEEECcccccccccccccccCccEEEEcchhh
Confidence            4799999999999999999877888888652  3333322221   2344555555555432     3499999999998


Q ss_pred             CccChhcHHHHHHHHHhcccCCcEEEEeeccC
Q 046488          399 GWIDFVLLDFILYDWDRVLRPGGLLWIDSFFC  430 (480)
Q Consensus       399 h~~d~~~l~~~L~EI~RVLKPGG~fiI~~f~~  430 (480)
                      |+.+. ....++.++.|+|||||++++.++..
T Consensus       136 ~~~~~-~~~~~l~~~~~~LkpgG~l~i~~~~~  166 (245)
T 3ggd_A          136 HIPVE-KRELLGQSLRILLGKQGAMYLIELGT  166 (245)
T ss_dssp             TSCGG-GHHHHHHHHHHHHTTTCEEEEEEECT
T ss_pred             cCCHH-HHHHHHHHHHHHcCCCCEEEEEeCCc
Confidence            87633 23679999999999999988876543

>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}

Probab=99.25  E-value=3.8e-11  Score=116.58  Aligned_cols=124  Identities=13%  Similarity=0.072  Sum_probs=82.2

Q ss_pred             cCCCCCCCCeEEEECCCCcHHHHHHhhC-C--CEEEEEecCCChhHHHHHHH----hCCCCeeeec---ccCCCCCCCcc
Q 046488          319 LDIKPGEIRIGLDFSIGTGTFAARMREF-N--VTLVSAIINLGAPFNEMIAL----RGLVPLYITI---NQRVPFFDNTL  388 (480)
Q Consensus       319 L~l~~g~iR~VLDVGCGtG~fAa~Lae~-g--V~Vv~vd~d~~~~~~~~iA~----rglip~~~~~---ae~LPFpd~SF  388 (480)
                      |.++||+  +|||+|||+|.++..+++. |  -.|++++++  +.+...+..    ++.+..+..+   .+..++.++++
T Consensus        73 l~ikpG~--~VldlG~G~G~~~~~la~~VG~~G~V~avD~s--~~~~~~l~~~a~~~~ni~~V~~d~~~p~~~~~~~~~v  148 (233)
T 4df3_A           73 LPVKEGD--RILYLGIASGTTASHMSDIIGPRGRIYGVEFA--PRVMRDLLTVVRDRRNIFPILGDARFPEKYRHLVEGV  148 (233)
T ss_dssp             CCCCTTC--EEEEETCTTSHHHHHHHHHHCTTCEEEEEECC--HHHHHHHHHHSTTCTTEEEEESCTTCGGGGTTTCCCE
T ss_pred             cCCCCCC--EEEEecCcCCHHHHHHHHHhCCCceEEEEeCC--HHHHHHHHHhhHhhcCeeEEEEeccCccccccccceE
Confidence            4577886  8999999999999999985 3  356666654  344443322    2233334433   45578889999


Q ss_pred             chheecccccCccChhcHHHHHHHHHhcccCCcEEEEeeccC-------ChhhHHHHHHHHHHcCceeeE
Q 046488          389 DLIHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDSFFC-------AKEDMNDYLEVFKMLKYKKHK  451 (480)
Q Consensus       389 DlV~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~f~~-------~~edL~~~~~~l~~lGfkkl~  451 (480)
                      |+|++...  +..+.   ..++.++.|+|||||++++.....       ..+..+...+.++..||+.+.
T Consensus       149 DvVf~d~~--~~~~~---~~~l~~~~r~LKpGG~lvI~ik~r~~d~~~p~~~~~~~ev~~L~~~GF~l~e  213 (233)
T 4df3_A          149 DGLYADVA--QPEQA---AIVVRNARFFLRDGGYMLMAIKARSIDVTTEPSEVYKREIKTLMDGGLEIKD  213 (233)
T ss_dssp             EEEEECCC--CTTHH---HHHHHHHHHHEEEEEEEEEEEECCHHHHHTCCCHHHHHHHHHHHHTTCCEEE
T ss_pred             EEEEEecc--CChhH---HHHHHHHHHhccCCCEEEEEEecccCCCCCChHHHHHHHHHHHHHCCCEEEE
Confidence            99986432  22222   568999999999999998863222       122234455677888998654

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}

Probab=99.24  E-value=2.6e-11  Score=110.35  Aligned_cols=149  Identities=16%  Similarity=0.110  Sum_probs=91.3

Q ss_pred             CCCCCCCeEEEECCCCcHHHHHHhhC---CCEEEEEecCCChhHHH----HHHHhCC---CCeeeecccCCC-CCCCccc
Q 046488          321 IKPGEIRIGLDFSIGTGTFAARMREF---NVTLVSAIINLGAPFNE----MIALRGL---VPLYITINQRVP-FFDNTLD  389 (480)
Q Consensus       321 l~~g~iR~VLDVGCGtG~fAa~Lae~---gV~Vv~vd~d~~~~~~~----~iA~rgl---ip~~~~~ae~LP-Fpd~SFD  389 (480)
                      ++++.  +|||+|||+|.++..++++   +..+++++++.  .+..    .+...+.   +.+..++++.++ +.+++||
T Consensus        20 ~~~~~--~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~--~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD   95 (197)
T 3eey_A           20 VKEGD--TVVDATCGNGNDTAFLASLVGENGRVFGFDIQD--KAIANTTKKLTDLNLIDRVTLIKDGHQNMDKYIDCPVK   95 (197)
T ss_dssp             CCTTC--EEEESCCTTSHHHHHHHHHHCTTCEEEEECSCH--HHHHHHHHHHHHTTCGGGEEEECSCGGGGGGTCCSCEE
T ss_pred             CCCCC--EEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCH--HHHHHHHHHHHHcCCCCCeEEEECCHHHHhhhccCCce
Confidence            44553  8999999999999999886   24788887652  2222    2222222   344556666665 7789999


Q ss_pred             hheecccccCc------cChhcHHHHHHHHHhcccCCcEEEEeeccCCh---hhHHHHHHHHHH---cCceeeEEEEeec
Q 046488          390 LIHTTRFLDGW------IDFVLLDFILYDWDRVLRPGGLLWIDSFFCAK---EDMNDYLEVFKM---LKYKKHKWVVVPK  457 (480)
Q Consensus       390 lV~ss~vL~h~------~d~~~l~~~L~EI~RVLKPGG~fiI~~f~~~~---edL~~~~~~l~~---lGfkkl~W~~~~k  457 (480)
                      +|++...+...      ........++.++.|+|||||++++..|....   ++...+.+.++.   .+|....+....+
T Consensus        96 ~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~v~~~~~~~~  175 (197)
T 3eey_A           96 AVMFNLGYLPSGDHSISTRPETTIQALSKAMELLVTGGIITVVIYYGGDTGFEEKEKVLEFLKGVDQKKFIVQRTDFINQ  175 (197)
T ss_dssp             EEEEEESBCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEEECCBTTTBSHHHHHHHHHHTTSCTTTEEEEEEEETTC
T ss_pred             EEEEcCCcccCcccccccCcccHHHHHHHHHHhCcCCCEEEEEEccCCCCcHHHHHHHHHHHHhCCCCcEEEEEEEeccC
Confidence            99987655221      11112246999999999999999988654322   123334444443   4577666666544


Q ss_pred             cCCCCcceeEEEEEEeCCCC
Q 046488          458 RDKDDREVFFSAVLEKPPRP  477 (480)
Q Consensus       458 ~d~~~~E~~lsav~qKP~~~  477 (480)
                      .+.  .. + ..|.||-..+
T Consensus       176 ~~~--pp-~-~~~~~~~~~~  191 (197)
T 3eey_A          176 ANC--PP-I-LVCIEKISEG  191 (197)
T ss_dssp             CSC--CC-E-EEEEEECCSS
T ss_pred             ccC--CC-e-EEEEEEcccc
Confidence            221  22 2 3456665553

>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}

Probab=99.24  E-value=7.3e-12  Score=125.56  Aligned_cols=122  Identities=14%  Similarity=0.007  Sum_probs=83.8

Q ss_pred             CCeEEEECCCCcHHHHHHhhC--CCEEEEEecCCChhHHHHH--HHhC---CCCeeeecccCCCCCCCccchheeccccc
Q 046488          326 IRIGLDFSIGTGTFAARMREF--NVTLVSAIINLGAPFNEMI--ALRG---LVPLYITINQRVPFFDNTLDLIHTTRFLD  398 (480)
Q Consensus       326 iR~VLDVGCGtG~fAa~Lae~--gV~Vv~vd~d~~~~~~~~i--A~rg---lip~~~~~ae~LPFpd~SFDlV~ss~vL~  398 (480)
                      ..+|||||||+|.++..++++  ++.++++++.   ....+.  ...+   .+.+..++.. .+++  +||+|++..+++
T Consensus       185 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~---~~~~~~~~~~~~~~~~v~~~~~d~~-~~~p--~~D~v~~~~vlh  258 (348)
T 3lst_A          185 TGTVADVGGGRGGFLLTVLREHPGLQGVLLDRA---EVVARHRLDAPDVAGRWKVVEGDFL-REVP--HADVHVLKRILH  258 (348)
T ss_dssp             SEEEEEETCTTSHHHHHHHHHCTTEEEEEEECH---HHHTTCCCCCGGGTTSEEEEECCTT-TCCC--CCSEEEEESCGG
T ss_pred             CceEEEECCccCHHHHHHHHHCCCCEEEEecCH---HHhhcccccccCCCCCeEEEecCCC-CCCC--CCcEEEEehhcc
Confidence            458999999999999999885  5566666642   221100  0001   1333444442 3444  899999999999


Q ss_pred             CccChhcHHHHHHHHHhcccCCcEEEEeeccCCh----------------------hhHHHHHHHHHHcCceeeEEEE
Q 046488          399 GWIDFVLLDFILYDWDRVLRPGGLLWIDSFFCAK----------------------EDMNDYLEVFKMLKYKKHKWVV  454 (480)
Q Consensus       399 h~~d~~~l~~~L~EI~RVLKPGG~fiI~~f~~~~----------------------edL~~~~~~l~~lGfkkl~W~~  454 (480)
                      +|.+.+. ..+|.+++|+|||||+++|.++....                      ...++|.++++..||+.+....
T Consensus       259 ~~~d~~~-~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~  335 (348)
T 3lst_A          259 NWGDEDS-VRILTNCRRVMPAHGRVLVIDAVVPEGNDAHQSKEMDFMMLAARTGQERTAAELEPLFTAAGLRLDRVVG  335 (348)
T ss_dssp             GSCHHHH-HHHHHHHHHTCCTTCEEEEEECCBCSSSSCCHHHHHHHHHHHTTSCCCCBHHHHHHHHHHTTEEEEEEEE
T ss_pred             CCCHHHH-HHHHHHHHHhcCCCCEEEEEEeccCCCCCcchhhhcChhhhhcCCCcCCCHHHHHHHHHHCCCceEEEEE
Confidence            9987642 57999999999999999987543221                      0134688999999999876543

>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}

Probab=99.24  E-value=4.9e-11  Score=118.80  Aligned_cols=140  Identities=14%  Similarity=0.080  Sum_probs=93.9

Q ss_pred             CCeEEEECCCCcHHHHHHhhC--CCEEEEEecCCC-hhHHHHHHHhCC---CCeeeecccCCC-CCCCccchheeccccc
Q 046488          326 IRIGLDFSIGTGTFAARMREF--NVTLVSAIINLG-APFNEMIALRGL---VPLYITINQRVP-FFDNTLDLIHTTRFLD  398 (480)
Q Consensus       326 iR~VLDVGCGtG~fAa~Lae~--gV~Vv~vd~d~~-~~~~~~iA~rgl---ip~~~~~ae~LP-Fpd~SFDlV~ss~vL~  398 (480)
                      ..+|||||||+|.++..++++  +..++++++... ..+...+...+.   +.+..++....+ +.++.||+|++..+++
T Consensus       180 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~D~v~~~~vlh  259 (352)
T 3mcz_A          180 ARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDLPTTRDAARKTIHAHDLGGRVEFFEKNLLDARNFEGGAADVVMLNDCLH  259 (352)
T ss_dssp             CCEEEEETCTTCHHHHHHHHHCTTCEEEEEECGGGHHHHHHHHHHTTCGGGEEEEECCTTCGGGGTTCCEEEEEEESCGG
T ss_pred             CCEEEEeCCCcCHHHHHHHHhCCCCeEEEEECHHHHHHHHHHHHhcCCCCceEEEeCCcccCcccCCCCccEEEEecccc
Confidence            458999999999999999886  567777775211 111122222232   344445544444 3567799999999999


Q ss_pred             CccChhcHHHHHHHHHhcccCCcEEEEeeccCCh------------------------hhHHHHHHHHHHcCceeeEEEE
Q 046488          399 GWIDFVLLDFILYDWDRVLRPGGLLWIDSFFCAK------------------------EDMNDYLEVFKMLKYKKHKWVV  454 (480)
Q Consensus       399 h~~d~~~l~~~L~EI~RVLKPGG~fiI~~f~~~~------------------------edL~~~~~~l~~lGfkkl~W~~  454 (480)
                      +|.+.. ...++.++.|+|||||++++.++....                        ...++|.+++++.||+.+.-..
T Consensus       260 ~~~~~~-~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~  338 (352)
T 3mcz_A          260 YFDARE-AREVIGHAAGLVKPGGALLILTMTMNDDRVTPALSADFSLHMMVNTNHGELHPTPWIAGVVRDAGLAVGERSI  338 (352)
T ss_dssp             GSCHHH-HHHHHHHHHHTEEEEEEEEEEEECCCTTSSSSHHHHHHHHHHHHHSTTCCCCCHHHHHHHHHHTTCEEEEEEE
T ss_pred             cCCHHH-HHHHHHHHHHHcCCCCEEEEEEeccCCCCCCCchHHHhhHHHHhhCCCCCcCCHHHHHHHHHHCCCceeeecc
Confidence            997653 367999999999999999987532111                        0134578899999999776222


Q ss_pred             eeccCCCCcceeEEEEEEeCC
Q 046488          455 VPKRDKDDREVFFSAVLEKPP  475 (480)
Q Consensus       455 ~~k~d~~~~E~~lsav~qKP~  475 (480)
                      +         .+...+.+||.
T Consensus       339 g---------~~~l~~a~kp~  350 (352)
T 3mcz_A          339 G---------RYTLLIGQRSS  350 (352)
T ss_dssp             T---------TEEEEEEECCC
T ss_pred             C---------ceEEEEEecCC
Confidence            1         13345678884

>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*

Probab=99.23  E-value=3.3e-11  Score=122.29  Aligned_cols=123  Identities=11%  Similarity=0.045  Sum_probs=86.7

Q ss_pred             CCCeEEEECCCCcHHHHHHhhC--CCEEEEEecCCChhHHHHHHHhCCCCeeeecccCCCCCCCccchheecccccCccC
Q 046488          325 EIRIGLDFSIGTGTFAARMREF--NVTLVSAIINLGAPFNEMIALRGLVPLYITINQRVPFFDNTLDLIHTTRFLDGWID  402 (480)
Q Consensus       325 ~iR~VLDVGCGtG~fAa~Lae~--gV~Vv~vd~d~~~~~~~~iA~rglip~~~~~ae~LPFpd~SFDlV~ss~vL~h~~d  402 (480)
                      ...+|||||||+|.++..++++  +..++++++   ..+.........+.+..++... |++++  |+|++.+++|+|.+
T Consensus       203 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~---~~~~~~a~~~~~v~~~~~d~~~-~~p~~--D~v~~~~vlh~~~~  276 (368)
T 3reo_A          203 GLTTIVDVGGGTGAVASMIVAKYPSINAINFDL---PHVIQDAPAFSGVEHLGGDMFD-GVPKG--DAIFIKWICHDWSD  276 (368)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC---HHHHTTCCCCTTEEEEECCTTT-CCCCC--SEEEEESCGGGBCH
T ss_pred             CCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeh---HHHHHhhhhcCCCEEEecCCCC-CCCCC--CEEEEechhhcCCH
Confidence            3468999999999999999885  567777764   2222211111234455555544 66655  99999999999987


Q ss_pred             hhcHHHHHHHHHhcccCCcEEEEeeccCChh---------------------------hHHHHHHHHHHcCceeeEEEE
Q 046488          403 FVLLDFILYDWDRVLRPGGLLWIDSFFCAKE---------------------------DMNDYLEVFKMLKYKKHKWVV  454 (480)
Q Consensus       403 ~~~l~~~L~EI~RVLKPGG~fiI~~f~~~~e---------------------------dL~~~~~~l~~lGfkkl~W~~  454 (480)
                      ... ..+|++++|+|||||+++|.++.....                           ..++|.++++..||+.+....
T Consensus       277 ~~~-~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~rt~~e~~~ll~~AGF~~v~~~~  354 (368)
T 3reo_A          277 EHC-LKLLKNCYAALPDHGKVIVAEYILPPSPDPSIATKVVIHTDALMLAYNPGGKERTEKEFQALAMASGFRGFKVAS  354 (368)
T ss_dssp             HHH-HHHHHHHHHHSCTTCEEEEEECCCCSSCCCCHHHHHHHHHHHHHHHHSSBCCCCCHHHHHHHHHHTTCCEEEEEE
T ss_pred             HHH-HHHHHHHHHHcCCCCEEEEEEeccCCCCCCchhhhHHHhhhHHHHhhcCCCccCCHHHHHHHHHHCCCeeeEEEE
Confidence            642 579999999999999999875432110                           124578899999999876544

>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}

Probab=99.23  E-value=7.5e-11  Score=106.62  Aligned_cols=118  Identities=18%  Similarity=0.112  Sum_probs=86.0

Q ss_pred             CeEEEECCCCcHHHHHHhhCCCEEEEEecCCChhHHHHHHHhCCCCeeeecccCCCCCCCccchheecccccCccCh---
Q 046488          327 RIGLDFSIGTGTFAARMREFNVTLVSAIINLGAPFNEMIALRGLVPLYITINQRVPFFDNTLDLIHTTRFLDGWIDF---  403 (480)
Q Consensus       327 R~VLDVGCGtG~fAa~Lae~gV~Vv~vd~d~~~~~~~~iA~rglip~~~~~ae~LPFpd~SFDlV~ss~vL~h~~d~---  403 (480)
                      .+|||+|||+|.++..+++++ .+++++++.  .+...   ...+.+..+++.. ++++++||+|+++..+++..+.   
T Consensus        25 ~~vLD~GcG~G~~~~~l~~~~-~v~gvD~s~--~~~~~---~~~~~~~~~d~~~-~~~~~~fD~i~~n~~~~~~~~~~~~   97 (170)
T 3q87_B           25 KIVLDLGTSTGVITEQLRKRN-TVVSTDLNI--RALES---HRGGNLVRADLLC-SINQESVDVVVFNPPYVPDTDDPII   97 (170)
T ss_dssp             CEEEEETCTTCHHHHHHTTTS-EEEEEESCH--HHHHT---CSSSCEEECSTTT-TBCGGGCSEEEECCCCBTTCCCTTT
T ss_pred             CeEEEeccCccHHHHHHHhcC-cEEEEECCH--HHHhc---ccCCeEEECChhh-hcccCCCCEEEECCCCccCCccccc
Confidence            389999999999999999998 888888652  33322   4446666777655 7778999999998777654332   


Q ss_pred             ---hcHHHHHHHHHhcccCCcEEEEeeccCChhhHHHHHHHHHHcCceeeEEEE
Q 046488          404 ---VLLDFILYDWDRVLRPGGLLWIDSFFCAKEDMNDYLEVFKMLKYKKHKWVV  454 (480)
Q Consensus       404 ---~~l~~~L~EI~RVLKPGG~fiI~~f~~~~edL~~~~~~l~~lGfkkl~W~~  454 (480)
                         .....++.++.+.| |||++++....  ....+.+.++++..||+......
T Consensus        98 ~~~~~~~~~~~~~~~~l-pgG~l~~~~~~--~~~~~~l~~~l~~~gf~~~~~~~  148 (170)
T 3q87_B           98 GGGYLGREVIDRFVDAV-TVGMLYLLVIE--ANRPKEVLARLEERGYGTRILKV  148 (170)
T ss_dssp             BCCGGGCHHHHHHHHHC-CSSEEEEEEEG--GGCHHHHHHHHHHTTCEEEEEEE
T ss_pred             cCCcchHHHHHHHHhhC-CCCEEEEEEec--CCCHHHHHHHHHHCCCcEEEEEe
Confidence               01135889999999 99999886532  23345677888999998765443

>2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A

Probab=99.23  E-value=3.9e-11  Score=107.74  Aligned_cols=107  Identities=12%  Similarity=0.101  Sum_probs=75.3

Q ss_pred             CCCCCCCCeEEEECCCCcHHHHHHhhCCCEEEEEecCCChhHHHHHHHhC--CCCeeeecccCCCC---CCCccchheec
Q 046488          320 DIKPGEIRIGLDFSIGTGTFAARMREFNVTLVSAIINLGAPFNEMIALRG--LVPLYITINQRVPF---FDNTLDLIHTT  394 (480)
Q Consensus       320 ~l~~g~iR~VLDVGCGtG~fAa~Lae~gV~Vv~vd~d~~~~~~~~iA~rg--lip~~~~~ae~LPF---pd~SFDlV~ss  394 (480)
                      ++++|  .+|||+|||+.              .+++  +..+...+.++-  .+.+..++++.+|+   ++++||+|+|.
T Consensus         9 g~~~g--~~vL~~~~g~v--------------~vD~--s~~ml~~a~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~V~~~   70 (176)
T 2ld4_A            9 GISAG--QFVAVVWDKSS--------------PVEA--LKGLVDKLQALTGNEGRVSVENIKQLLQSAHKESSFDIILSG   70 (176)
T ss_dssp             TCCTT--SEEEEEECTTS--------------CHHH--HHHHHHHHHHHTTTTSEEEEEEGGGGGGGCCCSSCEEEEEEC
T ss_pred             CCCCC--CEEEEecCCce--------------eeeC--CHHHHHHHHHhcccCcEEEEechhcCccccCCCCCEeEEEEC
Confidence            34555  48999999961              1222  233433333321  35566677888887   89999999999


Q ss_pred             ccccCc-cChhcHHHHHHHHHhcccCCcEEEEeeccCCh-------hhHHHHHHHHHHcCc
Q 046488          395 RFLDGW-IDFVLLDFILYDWDRVLRPGGLLWIDSFFCAK-------EDMNDYLEVFKMLKY  447 (480)
Q Consensus       395 ~vL~h~-~d~~~l~~~L~EI~RVLKPGG~fiI~~f~~~~-------edL~~~~~~l~~lGf  447 (480)
                      .+++|+ .+.   ..++.|++|+|||||+|++.+.....       ...+.+.+.++..||
T Consensus        71 ~~l~~~~~~~---~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf  128 (176)
T 2ld4_A           71 LVPGSTTLHS---AEILAEIARILRPGGCLFLKEPVETAVDNNSKVKTASKLCSALTLSGL  128 (176)
T ss_dssp             CSTTCCCCCC---HHHHHHHHHHEEEEEEEEEEEEEESSSCSSSSSCCHHHHHHHHHHTTC
T ss_pred             ChhhhcccCH---HHHHHHHHHHCCCCEEEEEEcccccccccccccCCHHHHHHHHHHCCC
Confidence            999888 554   57999999999999999986421110       124678889999999

>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}

Probab=99.22  E-value=5.3e-11  Score=119.08  Aligned_cols=136  Identities=15%  Similarity=0.103  Sum_probs=87.8

Q ss_pred             CeEEEECCCCcHHHHHHhhCCC-EEEEEecCCChhHHHHHHHhCCCCe--e-eecccCCC---CCCCccchheecccccC
Q 046488          327 RIGLDFSIGTGTFAARMREFNV-TLVSAIINLGAPFNEMIALRGLVPL--Y-ITINQRVP---FFDNTLDLIHTTRFLDG  399 (480)
Q Consensus       327 R~VLDVGCGtG~fAa~Lae~gV-~Vv~vd~d~~~~~~~~iA~rglip~--~-~~~ae~LP---Fpd~SFDlV~ss~vL~h  399 (480)
                      ++|||+|||||.|+..|+++|. .|+++|++.  .++.. +.+.....  + ...++.++   ++..+||+|++..++++
T Consensus        87 ~~vLDiGcGTG~~t~~L~~~ga~~V~aVDvs~--~mL~~-a~r~~~rv~~~~~~ni~~l~~~~l~~~~fD~v~~d~sf~s  163 (291)
T 3hp7_A           87 MITIDIGASTGGFTDVMLQNGAKLVYAVDVGT--NQLVW-KLRQDDRVRSMEQYNFRYAEPVDFTEGLPSFASIDVSFIS  163 (291)
T ss_dssp             CEEEEETCTTSHHHHHHHHTTCSEEEEECSSS--SCSCH-HHHTCTTEEEECSCCGGGCCGGGCTTCCCSEEEECCSSSC
T ss_pred             cEEEecCCCccHHHHHHHhCCCCEEEEEECCH--HHHHH-HHHhCcccceecccCceecchhhCCCCCCCEEEEEeeHhh
Confidence            5899999999999999998875 788888753  23222 22211111  1 11122222   34557999999877764


Q ss_pred             ccChhcHHHHHHHHHhcccCCcEEEEe---eccCChh----------------hHHHHHHHHHHcCceeeEEEEeeccCC
Q 046488          400 WIDFVLLDFILYDWDRVLRPGGLLWID---SFFCAKE----------------DMNDYLEVFKMLKYKKHKWVVVPKRDK  460 (480)
Q Consensus       400 ~~d~~~l~~~L~EI~RVLKPGG~fiI~---~f~~~~e----------------dL~~~~~~l~~lGfkkl~W~~~~k~d~  460 (480)
                      +      ..+|.|+.|+|||||++++.   .|...++                .++.+.+.++..||....+...+-...
T Consensus       164 l------~~vL~e~~rvLkpGG~lv~lvkPqfe~~~~~~~~~G~vrd~~~~~~~~~~v~~~~~~~Gf~v~~~~~spi~g~  237 (291)
T 3hp7_A          164 L------NLILPALAKILVDGGQVVALVKPQFEAGREQIGKNGIVRESSIHEKVLETVTAFAVDYGFSVKGLDFSPIQGG  237 (291)
T ss_dssp             G------GGTHHHHHHHSCTTCEEEEEECGGGTSCGGGCC-CCCCCCHHHHHHHHHHHHHHHHHTTEEEEEEEECSSCCG
T ss_pred             H------HHHHHHHHHHcCcCCEEEEEECcccccChhhcCCCCccCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCC
Confidence            3      24899999999999999886   3432221                124577888999999887776554433


Q ss_pred             -CCcceeEEEEEEe
Q 046488          461 -DDREVFFSAVLEK  473 (480)
Q Consensus       461 -~~~E~~lsav~qK  473 (480)
                       ++-|.++  .++|
T Consensus       238 ~gn~e~l~--~~~~  249 (291)
T 3hp7_A          238 HGNIEFLA--HLEK  249 (291)
T ss_dssp             GGCCCEEE--EEEE
T ss_pred             CcCHHHHH--Hhhh
Confidence             4556433  3455

>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}

Probab=99.22  E-value=1.9e-10  Score=107.04  Aligned_cols=144  Identities=16%  Similarity=0.028  Sum_probs=89.2

Q ss_pred             CeEEEECCC-CcHHHHHHhhC-CCEEEEEecCCCh--hHHHHHHHhCC-CCeeeeccc-CCCCCCCccchheecccccCc
Q 046488          327 RIGLDFSIG-TGTFAARMREF-NVTLVSAIINLGA--PFNEMIALRGL-VPLYITINQ-RVPFFDNTLDLIHTTRFLDGW  400 (480)
Q Consensus       327 R~VLDVGCG-tG~fAa~Lae~-gV~Vv~vd~d~~~--~~~~~iA~rgl-ip~~~~~ae-~LPFpd~SFDlV~ss~vL~h~  400 (480)
                      .+|||+||| +|.++..+++. +..+++++++...  .+...+...+. +.+..+++. ..++++++||+|++.-.+.+.
T Consensus        57 ~~vLDlG~G~~G~~~~~la~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~I~~npp~~~~  136 (230)
T 3evz_A           57 EVALEIGTGHTAMMALMAEKFFNCKVTATEVDEEFFEYARRNIERNNSNVRLVKSNGGIIKGVVEGTFDVIFSAPPYYDK  136 (230)
T ss_dssp             CEEEEECCTTTCHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHTTCCCEEEECSSCSSTTTCCSCEEEEEECCCCC--
T ss_pred             CEEEEcCCCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHhCCCcEEEeCCchhhhhcccCceeEEEECCCCcCC
Confidence            489999999 99999999988 7888888876311  11112222332 344455532 346678999999987554432


Q ss_pred             cC----------------hhcHHHHHHHHHhcccCCcEEEEeeccCChhhHHHHHHHHHHcCceeeEEEEeeccCCCCcc
Q 046488          401 ID----------------FVLLDFILYDWDRVLRPGGLLWIDSFFCAKEDMNDYLEVFKMLKYKKHKWVVVPKRDKDDRE  464 (480)
Q Consensus       401 ~d----------------~~~l~~~L~EI~RVLKPGG~fiI~~f~~~~edL~~~~~~l~~lGfkkl~W~~~~k~d~~~~E  464 (480)
                      .+                ......++.++.|+|||||++++.... .....+.+.+.++..||.........  +   ..
T Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~-~~~~~~~~~~~l~~~g~~~~~~~~~~--g---~~  210 (230)
T 3evz_A          137 PLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALYLPD-KEKLLNVIKERGIKLGYSVKDIKFKV--G---TR  210 (230)
T ss_dssp             -------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEEEES-CHHHHHHHHHHHHHTTCEEEEEEECC--C---C-
T ss_pred             ccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEEecc-cHhHHHHHHHHHHHcCCceEEEEecC--C---Ce
Confidence            22                011256899999999999999885211 22445667788899998644433321  1   22


Q ss_pred             eeEEEEEEeCCC
Q 046488          465 VFFSAVLEKPPR  476 (480)
Q Consensus       465 ~~lsav~qKP~~  476 (480)
                      +....+++|+..
T Consensus       211 ~~~~l~f~~~~~  222 (230)
T 3evz_A          211 WRHSLIFFKGIS  222 (230)
T ss_dssp             CEEEEEEECCC-
T ss_pred             EEEEEEEecccc
Confidence            333456676543

>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*

Probab=99.22  E-value=1.1e-10  Score=118.32  Aligned_cols=123  Identities=15%  Similarity=0.165  Sum_probs=88.3

Q ss_pred             CCeEEEECCCCcHHHHHHhhC--CCEEEEEecCCChhHHH----HHHHhCC---CCeeeecccCCCCCCCccchheeccc
Q 046488          326 IRIGLDFSIGTGTFAARMREF--NVTLVSAIINLGAPFNE----MIALRGL---VPLYITINQRVPFFDNTLDLIHTTRF  396 (480)
Q Consensus       326 iR~VLDVGCGtG~fAa~Lae~--gV~Vv~vd~d~~~~~~~----~iA~rgl---ip~~~~~ae~LPFpd~SFDlV~ss~v  396 (480)
                      ..+|||||||+|.++..++++  +..++++|+   ..+..    .+...+.   +.+..++.. .|++. .||+|++..+
T Consensus       203 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~---~~~~~~a~~~~~~~~l~~~v~~~~~d~~-~~~p~-~~D~v~~~~v  277 (369)
T 3gwz_A          203 AATAVDIGGGRGSLMAAVLDAFPGLRGTLLER---PPVAEEARELLTGRGLADRCEILPGDFF-ETIPD-GADVYLIKHV  277 (369)
T ss_dssp             CSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC---HHHHHHHHHHHHHTTCTTTEEEEECCTT-TCCCS-SCSEEEEESC
T ss_pred             CcEEEEeCCCccHHHHHHHHHCCCCeEEEEcC---HHHHHHHHHhhhhcCcCCceEEeccCCC-CCCCC-CceEEEhhhh
Confidence            468999999999999999886  567777765   12222    2222232   444455544 46666 8999999999


Q ss_pred             ccCccChhcHHHHHHHHHhcccCCcEEEEeeccCCh---------------------hhHHHHHHHHHHcCceeeEEEE
Q 046488          397 LDGWIDFVLLDFILYDWDRVLRPGGLLWIDSFFCAK---------------------EDMNDYLEVFKMLKYKKHKWVV  454 (480)
Q Consensus       397 L~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~f~~~~---------------------edL~~~~~~l~~lGfkkl~W~~  454 (480)
                      +++|.++.. ..+|.++.|+|||||+++|.++....                     ...++|.++++..||+.+....
T Consensus       278 lh~~~d~~~-~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~  355 (369)
T 3gwz_A          278 LHDWDDDDV-VRILRRIATAMKPDSRLLVIDNLIDERPAASTLFVDLLLLVLVGGAERSESEFAALLEKSGLRVERSLP  355 (369)
T ss_dssp             GGGSCHHHH-HHHHHHHHTTCCTTCEEEEEEEBCCSSCCHHHHHHHHHHHHHHSCCCBCHHHHHHHHHTTTEEEEEEEE
T ss_pred             hccCCHHHH-HHHHHHHHHHcCCCCEEEEEEeccCCCCCCchhHhhHHHHhhcCCccCCHHHHHHHHHHCCCeEEEEEE
Confidence            999976642 46999999999999999987543322                     1134678899999999887543

>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}

Probab=99.21  E-value=1.6e-10  Score=129.50  Aligned_cols=95  Identities=14%  Similarity=0.088  Sum_probs=75.5

Q ss_pred             CeEEEECCCCcHHHHHHhhCC---CEEEEEecCCChhHHHHHHHh-----------CC--CCeeeecccCCCCCCCccch
Q 046488          327 RIGLDFSIGTGTFAARMREFN---VTLVSAIINLGAPFNEMIALR-----------GL--VPLYITINQRVPFFDNTLDL  390 (480)
Q Consensus       327 R~VLDVGCGtG~fAa~Lae~g---V~Vv~vd~d~~~~~~~~iA~r-----------gl--ip~~~~~ae~LPFpd~SFDl  390 (480)
                      .+|||||||+|.++..|++++   ..++++|++.  .+ ...|.+           +.  +.++.+++..+|+++++||+
T Consensus       723 ~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~--em-Le~AReRLa~~lnAkr~gl~nVefiqGDa~dLp~~d~sFDl  799 (950)
T 3htx_A          723 STLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISP--KG-LARAAKMLHVKLNKEACNVKSATLYDGSILEFDSRLHDVDI  799 (950)
T ss_dssp             SEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCH--HH-HHHHHHHHHHHTTTTCSSCSEEEEEESCTTSCCTTSCSCCE
T ss_pred             CEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCH--HH-HHHHHHHhhhccchhhcCCCceEEEECchHhCCcccCCeeE
Confidence            489999999999999999986   6899988763  23 223322           22  44566778899999999999


Q ss_pred             heecccccCccChhcHHHHHHHHHhcccCCcEEEEe
Q 046488          391 IHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWID  426 (480)
Q Consensus       391 V~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~  426 (480)
                      |++..+++|+.++. ...++.++.|+|||| ++++.
T Consensus       800 VV~~eVLeHL~dp~-l~~~L~eI~RvLKPG-~LIIS  833 (950)
T 3htx_A          800 GTCLEVIEHMEEDQ-ACEFGEKVLSLFHPK-LLIVS  833 (950)
T ss_dssp             EEEESCGGGSCHHH-HHHHHHHHHHTTCCS-EEEEE
T ss_pred             EEEeCchhhCChHH-HHHHHHHHHHHcCCC-EEEEE
Confidence            99999999988654 256899999999999 76765

>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}

Probab=99.21  E-value=4.1e-11  Score=112.68  Aligned_cols=120  Identities=12%  Similarity=0.067  Sum_probs=77.5

Q ss_pred             CeEEEECCCCcHHHHHHhhC---CCEEEEEecCCC--hhHHHHHHHh-CCCCeeeecccC---CCCCCCccchheecccc
Q 046488          327 RIGLDFSIGTGTFAARMREF---NVTLVSAIINLG--APFNEMIALR-GLVPLYITINQR---VPFFDNTLDLIHTTRFL  397 (480)
Q Consensus       327 R~VLDVGCGtG~fAa~Lae~---gV~Vv~vd~d~~--~~~~~~iA~r-glip~~~~~ae~---LPFpd~SFDlV~ss~vL  397 (480)
                      .+|||+|||+|.++..|+++   +..+++++++..  ..+. ..+.+ ..+.+..+++..   +|+.+++||+|++... 
T Consensus        79 ~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~-~~a~~~~~v~~~~~d~~~~~~~~~~~~~~D~V~~~~~-  156 (233)
T 2ipx_A           79 AKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLI-NLAKKRTNIIPVIEDARHPHKYRMLIAMVDVIFADVA-  156 (233)
T ss_dssp             CEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHH-HHHHHCTTEEEECSCTTCGGGGGGGCCCEEEEEECCC-
T ss_pred             CEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHH-HHhhccCCeEEEEcccCChhhhcccCCcEEEEEEcCC-
Confidence            48999999999999999886   257888776521  1122 23333 334455555444   6777899999998543 


Q ss_pred             cCccChhcHHHHHHHHHhcccCCcEEEEeeccC------Chhh-HHHHHHHHHHcCceeeEE
Q 046488          398 DGWIDFVLLDFILYDWDRVLRPGGLLWIDSFFC------AKED-MNDYLEVFKMLKYKKHKW  452 (480)
Q Consensus       398 ~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~f~~------~~ed-L~~~~~~l~~lGfkkl~W  452 (480)
                          .+.....++.++.|+|||||++++.....      .... +....+.++..||+.+..
T Consensus       157 ----~~~~~~~~~~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~  214 (233)
T 2ipx_A          157 ----QPDQTRIVALNAHTFLRNGGHFVISIKANCIDSTASAEAVFASEVKKMQQENMKPQEQ  214 (233)
T ss_dssp             ----CTTHHHHHHHHHHHHEEEEEEEEEEEEHHHHCSSSCHHHHHHHHHHTTGGGTEEEEEE
T ss_pred             ----CccHHHHHHHHHHHHcCCCeEEEEEEcccccccCCCHHHHHHHHHHHHHHCCCceEEE
Confidence                22211446889999999999999853211      1111 112246778889987763

>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53

Probab=99.20  E-value=1.1e-10  Score=108.24  Aligned_cols=122  Identities=16%  Similarity=0.185  Sum_probs=81.3

Q ss_pred             CeEEEECCCCcHHHHHHhhC--CCEEEEEecCCCh--hHHHHHHHhCC--CCeeeecccCCC--CCCCccchheeccccc
Q 046488          327 RIGLDFSIGTGTFAARMREF--NVTLVSAIINLGA--PFNEMIALRGL--VPLYITINQRVP--FFDNTLDLIHTTRFLD  398 (480)
Q Consensus       327 R~VLDVGCGtG~fAa~Lae~--gV~Vv~vd~d~~~--~~~~~iA~rgl--ip~~~~~ae~LP--Fpd~SFDlV~ss~vL~  398 (480)
                      .+|||+|||+|.++..+++.  +..+++++++...  .+...+...+.  +.++.+++..++  +++++||+|++.... 
T Consensus        43 ~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~D~i~~~~~~-  121 (214)
T 1yzh_A           43 PIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNFSD-  121 (214)
T ss_dssp             CEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEESCC-
T ss_pred             CeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCCCCCCEEEEECCC-
Confidence            48999999999999999886  5788888875311  11122223333  334556666777  889999999987643 


Q ss_pred             CccChh------cHHHHHHHHHhcccCCcEEEEeeccCChhhHHHHHHHHHHcCceeeE
Q 046488          399 GWIDFV------LLDFILYDWDRVLRPGGLLWIDSFFCAKEDMNDYLEVFKMLKYKKHK  451 (480)
Q Consensus       399 h~~d~~------~l~~~L~EI~RVLKPGG~fiI~~f~~~~edL~~~~~~l~~lGfkkl~  451 (480)
                      +|....      ....++.++.|+|||||.+++..-  .....+...+.++..||....
T Consensus       122 ~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~--~~~~~~~~~~~~~~~g~~~~~  178 (214)
T 1yzh_A          122 PWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTD--NRGLFEYSLVSFSQYGMKLNG  178 (214)
T ss_dssp             CCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEES--CHHHHHHHHHHHHHHTCEEEE
T ss_pred             CccccchhhhccCCHHHHHHHHHHcCCCcEEEEEeC--CHHHHHHHHHHHHHCCCeeee
Confidence            332210      114699999999999999988531  112234456677788887543

>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}

Probab=99.20  E-value=1.1e-10  Score=115.48  Aligned_cols=124  Identities=10%  Similarity=-0.009  Sum_probs=87.1

Q ss_pred             CeEEEECCCCcHHHHHHhhC--CCEEEEEecC-CChhHHHHHHHh---CCCCeeeecccCCCCCCCccchheecccccCc
Q 046488          327 RIGLDFSIGTGTFAARMREF--NVTLVSAIIN-LGAPFNEMIALR---GLVPLYITINQRVPFFDNTLDLIHTTRFLDGW  400 (480)
Q Consensus       327 R~VLDVGCGtG~fAa~Lae~--gV~Vv~vd~d-~~~~~~~~iA~r---glip~~~~~ae~LPFpd~SFDlV~ss~vL~h~  400 (480)
                      .+|||+|||+|.++..++++  +..++++|+. ....+...+...   ..+.+..++... |++ ++||+|++..++++|
T Consensus       169 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~-~~~D~v~~~~vl~~~  246 (334)
T 2ip2_A          169 RSFVDVGGGSGELTKAILQAEPSARGVMLDREGSLGVARDNLSSLLAGERVSLVGGDMLQ-EVP-SNGDIYLLSRIIGDL  246 (334)
T ss_dssp             CEEEEETCTTCHHHHHHHHHCTTCEEEEEECTTCTHHHHHHTHHHHHTTSEEEEESCTTT-CCC-SSCSEEEEESCGGGC
T ss_pred             CEEEEeCCCchHHHHHHHHHCCCCEEEEeCcHHHHHHHHHHHhhcCCCCcEEEecCCCCC-CCC-CCCCEEEEchhccCC
Confidence            68999999999999999876  5677777761 122222222222   234555555444 555 689999999999999


Q ss_pred             cChhcHHHHHHHHHhcccCCcEEEEeeccCCh----------------------hhHHHHHHHHHHcCceeeEEE
Q 046488          401 IDFVLLDFILYDWDRVLRPGGLLWIDSFFCAK----------------------EDMNDYLEVFKMLKYKKHKWV  453 (480)
Q Consensus       401 ~d~~~l~~~L~EI~RVLKPGG~fiI~~f~~~~----------------------edL~~~~~~l~~lGfkkl~W~  453 (480)
                      .+... ..++.++.|+|||||++++.+.....                      ...++|.+++++.||+.+...
T Consensus       247 ~~~~~-~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~  320 (334)
T 2ip2_A          247 DEAAS-LRLLGNCREAMAGDGRVVVIERTISASEPSPMSVLWDVHLFMACAGRHRTTEEVVDLLGRGGFAVERIV  320 (334)
T ss_dssp             CHHHH-HHHHHHHHHHSCTTCEEEEEECCBCSSSCCHHHHHHHHHHHHHHSCCCCBHHHHHHHHHHTTEEEEEEE
T ss_pred             CHHHH-HHHHHHHHHhcCCCCEEEEEEeccCCCCCcchhHHhhhHhHhhCCCcCCCHHHHHHHHHHCCCceeEEE
Confidence            76542 57999999999999999987543211                      013457889999999977643

>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3

Probab=99.20  E-value=2.5e-11  Score=114.23  Aligned_cols=97  Identities=9%  Similarity=0.031  Sum_probs=64.4

Q ss_pred             CCCCCCCCeEEEECCCCcHHHHHHhhCC--CEEEEEecCCChhHH---HHHHHhC-CCCeeeecccC----CCCCCCccc
Q 046488          320 DIKPGEIRIGLDFSIGTGTFAARMREFN--VTLVSAIINLGAPFN---EMIALRG-LVPLYITINQR----VPFFDNTLD  389 (480)
Q Consensus       320 ~l~~g~iR~VLDVGCGtG~fAa~Lae~g--V~Vv~vd~d~~~~~~---~~iA~rg-lip~~~~~ae~----LPFpd~SFD  389 (480)
                      .+.++  .+|||+|||+|.++..+++..  ..++++|++.  .+.   ...+.+. .+....+++..    .|+. ++||
T Consensus        54 ~~~~g--~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~--~~l~~~~~~a~~~~~v~~~~~d~~~~~~~~~~~-~~fD  128 (210)
T 1nt2_A           54 KLRGD--ERVLYLGAASGTTVSHLADIVDEGIIYAVEYSA--KPFEKLLELVRERNNIIPLLFDASKPWKYSGIV-EKVD  128 (210)
T ss_dssp             CCCSS--CEEEEETCTTSHHHHHHHHHTTTSEEEEECCCH--HHHHHHHHHHHHCSSEEEECSCTTCGGGTTTTC-CCEE
T ss_pred             CCCCC--CEEEEECCcCCHHHHHHHHHcCCCEEEEEECCH--HHHHHHHHHHhcCCCeEEEEcCCCCchhhcccc-ccee
Confidence            34444  489999999999999998762  5788887652  321   2233332 23333444443    3554 8999


Q ss_pred             hheecccccCccChhcHHHHHHHHHhcccCCcEEEEe
Q 046488          390 LIHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWID  426 (480)
Q Consensus       390 lV~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~  426 (480)
                      +|++.. ..    +.....++.|+.|+|||||+|++.
T Consensus       129 ~V~~~~-~~----~~~~~~~l~~~~r~LkpgG~l~i~  160 (210)
T 1nt2_A          129 LIYQDI-AQ----KNQIEILKANAEFFLKEKGEVVIM  160 (210)
T ss_dssp             EEEECC-CS----TTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             EEEEec-cC----hhHHHHHHHHHHHHhCCCCEEEEE
Confidence            999862 21    222245699999999999999987

>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A

Probab=99.20  E-value=1.7e-10  Score=108.58  Aligned_cols=117  Identities=9%  Similarity=0.064  Sum_probs=77.1

Q ss_pred             CeEEEECCCCcHHHHHHhhC-C-CEEEEEecCCChhHHHHHHHh----CCCCeeeecccC----CCCCCCccchheeccc
Q 046488          327 RIGLDFSIGTGTFAARMREF-N-VTLVSAIINLGAPFNEMIALR----GLVPLYITINQR----VPFFDNTLDLIHTTRF  396 (480)
Q Consensus       327 R~VLDVGCGtG~fAa~Lae~-g-V~Vv~vd~d~~~~~~~~iA~r----glip~~~~~ae~----LPFpd~SFDlV~ss~v  396 (480)
                      .+|||+|||+|.++..|++. + ..+++++++.  .+...+...    ..+....+++..    +++. ++||+|+    
T Consensus        76 ~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~--~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~-~~~D~v~----  148 (230)
T 1fbn_A           76 SKILYLGASAGTTPSHVADIADKGIVYAIEYAP--RIMRELLDACAERENIIPILGDANKPQEYANIV-EKVDVIY----  148 (230)
T ss_dssp             CEEEEESCCSSHHHHHHHHHTTTSEEEEEESCH--HHHHHHHHHTTTCTTEEEEECCTTCGGGGTTTS-CCEEEEE----
T ss_pred             CEEEEEcccCCHHHHHHHHHcCCcEEEEEECCH--HHHHHHHHHhhcCCCeEEEECCCCCcccccccC-ccEEEEE----
Confidence            48999999999999999987 3 6788887652  333322111    123344555665    7776 8999998    


Q ss_pred             ccCccChhcHHHHHHHHHhcccCCcEEEEeeccCC--h-----hh-H-HHHHHHHHHcCceeeEEE
Q 046488          397 LDGWIDFVLLDFILYDWDRVLRPGGLLWIDSFFCA--K-----ED-M-NDYLEVFKMLKYKKHKWV  453 (480)
Q Consensus       397 L~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~f~~~--~-----ed-L-~~~~~~l~~lGfkkl~W~  453 (480)
                       +++.++.....++.++.|+|||||++++. +...  .     .. . +.+. .++..||+.+...
T Consensus       149 -~~~~~~~~~~~~l~~~~~~LkpgG~l~i~-~~~~~~~~~~~~~~~~~~~l~-~l~~~Gf~~~~~~  211 (230)
T 1fbn_A          149 -EDVAQPNQAEILIKNAKWFLKKGGYGMIA-IKARSIDVTKDPKEIFKEQKE-ILEAGGFKIVDEV  211 (230)
T ss_dssp             -ECCCSTTHHHHHHHHHHHHEEEEEEEEEE-EEGGGTCSSSCHHHHHHHHHH-HHHHHTEEEEEEE
T ss_pred             -EecCChhHHHHHHHHHHHhCCCCcEEEEE-EecCCCCCCCCHHHhhHHHHH-HHHHCCCEEEEEE
Confidence             23344433356799999999999999986 3211  1     11 1 3344 7788899876544

>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}

Probab=99.19  E-value=8.8e-11  Score=112.79  Aligned_cols=132  Identities=15%  Similarity=0.131  Sum_probs=82.0

Q ss_pred             CeEEEECCCCcHHHHHHhhCCC-EEEEEecCCChhHHHHHHHhCCCCee--------eecccCC---CCCCCccchheec
Q 046488          327 RIGLDFSIGTGTFAARMREFNV-TLVSAIINLGAPFNEMIALRGLVPLY--------ITINQRV---PFFDNTLDLIHTT  394 (480)
Q Consensus       327 R~VLDVGCGtG~fAa~Lae~gV-~Vv~vd~d~~~~~~~~iA~rglip~~--------~~~ae~L---PFpd~SFDlV~ss  394 (480)
                      .+|||||||||.++..|+++|. .++++|++..  +... |.+......        ....+.+   ++.+.+||+++++
T Consensus        39 ~~VLDiGcGtG~~t~~la~~g~~~V~gvDis~~--ml~~-a~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~D~v~~~  115 (232)
T 3opn_A           39 KTCLDIGSSTGGFTDVMLQNGAKLVYALDVGTN--QLAW-KIRSDERVVVMEQFNFRNAVLADFEQGRPSFTSIDVSFIS  115 (232)
T ss_dssp             CEEEEETCTTSHHHHHHHHTTCSEEEEECSSCC--CCCH-HHHTCTTEEEECSCCGGGCCGGGCCSCCCSEEEECCSSSC
T ss_pred             CEEEEEccCCCHHHHHHHhcCCCEEEEEcCCHH--HHHH-HHHhCccccccccceEEEeCHhHcCcCCCCEEEEEEEhhh
Confidence            5899999999999999999875 8888887642  2222 222211110        0011222   2455677777654


Q ss_pred             ccccCccChhcHHHHHHHHHhcccCCcEEEEe---eccCCh----------------hhHHHHHHHHHHcCceeeEEEEe
Q 046488          395 RFLDGWIDFVLLDFILYDWDRVLRPGGLLWID---SFFCAK----------------EDMNDYLEVFKMLKYKKHKWVVV  455 (480)
Q Consensus       395 ~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~---~f~~~~----------------edL~~~~~~l~~lGfkkl~W~~~  455 (480)
                      .           ..++.|+.|+|||||+|++.   .|....                ...+++.++++..||+...+...
T Consensus       116 l-----------~~~l~~i~rvLkpgG~lv~~~~p~~e~~~~~~~~~G~~~d~~~~~~~~~~l~~~l~~aGf~v~~~~~~  184 (232)
T 3opn_A          116 L-----------DLILPPLYEILEKNGEVAALIKPQFEAGREQVGKNGIIRDPKVHQMTIEKVLKTATQLGFSVKGLTFS  184 (232)
T ss_dssp             G-----------GGTHHHHHHHSCTTCEEEEEECHHHHSCHHHHC-CCCCCCHHHHHHHHHHHHHHHHHHTEEEEEEEEC
T ss_pred             H-----------HHHHHHHHHhccCCCEEEEEECcccccCHHHhCcCCeecCcchhHHHHHHHHHHHHHCCCEEEEEEEc
Confidence            2           24899999999999999886   121111                12345778999999998877665


Q ss_pred             eccCC-CCcceeEEEEEEeC
Q 046488          456 PKRDK-DDREVFFSAVLEKP  474 (480)
Q Consensus       456 ~k~d~-~~~E~~lsav~qKP  474 (480)
                      .-... ++-|.++  .++|.
T Consensus       185 pi~g~~gn~e~l~--~~~~~  202 (232)
T 3opn_A          185 PIKGGAGNVEFLV--HLLKD  202 (232)
T ss_dssp             SSCBTTTBCCEEE--EEEES
T ss_pred             cCCCCCCCHHHHH--HHhhc
Confidence            44322 3344332  35664

>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*

Probab=99.18  E-value=3.8e-11  Score=121.37  Aligned_cols=100  Identities=18%  Similarity=0.214  Sum_probs=73.2

Q ss_pred             CeEEEECCCCcHHHHHHhhCCC-EEEEEecCCChhHHHH-HHHhCC---CCeeeecccCCCCCCCccchheecccccCcc
Q 046488          327 RIGLDFSIGTGTFAARMREFNV-TLVSAIINLGAPFNEM-IALRGL---VPLYITINQRVPFFDNTLDLIHTTRFLDGWI  401 (480)
Q Consensus       327 R~VLDVGCGtG~fAa~Lae~gV-~Vv~vd~d~~~~~~~~-iA~rgl---ip~~~~~ae~LPFpd~SFDlV~ss~vL~h~~  401 (480)
                      .+|||||||+|.++..+++.|. .+++++++.......+ +...+.   +.+..+..+.+++++++||+|++..+..++.
T Consensus        68 ~~VLDvGcG~G~~~~~la~~g~~~v~gvD~s~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iis~~~~~~l~  147 (349)
T 3q7e_A           68 KVVLDVGSGTGILCMFAAKAGARKVIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMGYCLF  147 (349)
T ss_dssp             CEEEEESCTTSHHHHHHHHTTCSEEEEEECSTHHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECCCBBTBT
T ss_pred             CEEEEEeccchHHHHHHHHCCCCEEEEECcHHHHHHHHHHHHHcCCCCcEEEEECcHHHccCCCCceEEEEEcccccccc
Confidence            4899999999999999999865 8899887621111122 222332   4456677888999999999999966544443


Q ss_pred             ChhcHHHHHHHHHhcccCCcEEEEe
Q 046488          402 DFVLLDFILYDWDRVLRPGGLLWID  426 (480)
Q Consensus       402 d~~~l~~~L~EI~RVLKPGG~fiI~  426 (480)
                      ....+..++.++.|+|||||+++..
T Consensus       148 ~~~~~~~~l~~~~r~LkpgG~li~~  172 (349)
T 3q7e_A          148 YESMLNTVLHARDKWLAPDGLIFPD  172 (349)
T ss_dssp             BTCCHHHHHHHHHHHEEEEEEEESC
T ss_pred             CchhHHHHHHHHHHhCCCCCEEccc
Confidence            3333467999999999999998754

>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*

Probab=99.18  E-value=5.5e-11  Score=120.65  Aligned_cols=122  Identities=12%  Similarity=0.022  Sum_probs=86.6

Q ss_pred             CCeEEEECCCCcHHHHHHhhC--CCEEEEEecCCChhHHHHHHHhCCCCeeeecccCCCCCCCccchheecccccCccCh
Q 046488          326 IRIGLDFSIGTGTFAARMREF--NVTLVSAIINLGAPFNEMIALRGLVPLYITINQRVPFFDNTLDLIHTTRFLDGWIDF  403 (480)
Q Consensus       326 iR~VLDVGCGtG~fAa~Lae~--gV~Vv~vd~d~~~~~~~~iA~rglip~~~~~ae~LPFpd~SFDlV~ss~vL~h~~d~  403 (480)
                      ..+|||||||+|.++..++++  +..++++|+   ..+.........+.+..++... |++++  |+|++.+++|+|.+.
T Consensus       202 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~---~~~~~~a~~~~~v~~~~~D~~~-~~p~~--D~v~~~~vlh~~~d~  275 (364)
T 3p9c_A          202 LGTLVDVGGGVGATVAAIAAHYPTIKGVNFDL---PHVISEAPQFPGVTHVGGDMFK-EVPSG--DTILMKWILHDWSDQ  275 (364)
T ss_dssp             CSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC---HHHHTTCCCCTTEEEEECCTTT-CCCCC--SEEEEESCGGGSCHH
T ss_pred             CCEEEEeCCCCCHHHHHHHHHCCCCeEEEecC---HHHHHhhhhcCCeEEEeCCcCC-CCCCC--CEEEehHHhccCCHH
Confidence            468999999999999999875  567777664   2222211111234455566555 77765  999999999999765


Q ss_pred             hcHHHHHHHHHhcccCCcEEEEeeccCChh---------------------------hHHHHHHHHHHcCceeeEEEE
Q 046488          404 VLLDFILYDWDRVLRPGGLLWIDSFFCAKE---------------------------DMNDYLEVFKMLKYKKHKWVV  454 (480)
Q Consensus       404 ~~l~~~L~EI~RVLKPGG~fiI~~f~~~~e---------------------------dL~~~~~~l~~lGfkkl~W~~  454 (480)
                      .. ..+|++++|+|||||+++|.++.....                           ..++|.+++++.||+.+....
T Consensus       276 ~~-~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll~~AGF~~v~~~~  352 (364)
T 3p9c_A          276 HC-ATLLKNCYDALPAHGKVVLVQCILPVNPEANPSSQGVFHVDMIMLAHNPGGRERYEREFQALARGAGFTGVKSTY  352 (364)
T ss_dssp             HH-HHHHHHHHHHSCTTCEEEEEECCBCSSCCSSHHHHHHHHHHHHHHHHCSSCCCCBHHHHHHHHHHTTCCEEEEEE
T ss_pred             HH-HHHHHHHHHHcCCCCEEEEEEeccCCCCCcchhhhhHHHhHHHHHhcccCCccCCHHHHHHHHHHCCCceEEEEE
Confidence            42 679999999999999999875432110                           023577899999999887544

>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*

Probab=99.18  E-value=1.3e-10  Score=112.41  Aligned_cols=121  Identities=12%  Similarity=-0.008  Sum_probs=83.8

Q ss_pred             CCeEEEECCCCcHHHHHHhhC--CCEEEEEecCCChh--HHHHHHHhCC--CCeeeecccCCCCC---CCccchheeccc
Q 046488          326 IRIGLDFSIGTGTFAARMREF--NVTLVSAIINLGAP--FNEMIALRGL--VPLYITINQRVPFF---DNTLDLIHTTRF  396 (480)
Q Consensus       326 iR~VLDVGCGtG~fAa~Lae~--gV~Vv~vd~d~~~~--~~~~iA~rgl--ip~~~~~ae~LPFp---d~SFDlV~ss~v  396 (480)
                      ..+|||||||+|..+..|+..  +..+++++++...-  +...+...+.  +.++.+.++.++..   +++||+|++..+
T Consensus        81 ~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~l~~v~~~~~d~~~~~~~~~~~~~fD~I~s~a~  160 (249)
T 3g89_A           81 PLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERAIEVLGLKGARALWGRAEVLAREAGHREAYARAVARAV  160 (249)
T ss_dssp             SCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEECCHHHHTTSTTTTTCEEEEEEESS
T ss_pred             CCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCceEEEECcHHHhhcccccCCCceEEEECCc
Confidence            358999999999999998875  67888888653111  1122223343  34555667777653   589999998543


Q ss_pred             ccCccChhcHHHHHHHHHhcccCCcEEEEeeccCChhhHHHHHHHHHHcCceeeEEE
Q 046488          397 LDGWIDFVLLDFILYDWDRVLRPGGLLWIDSFFCAKEDMNDYLEVFKMLKYKKHKWV  453 (480)
Q Consensus       397 L~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~f~~~~edL~~~~~~l~~lGfkkl~W~  453 (480)
                       .   +   +..++.++.|+|||||+|++..-....+++..+...++.+||+.....
T Consensus       161 -~---~---~~~ll~~~~~~LkpgG~l~~~~g~~~~~e~~~~~~~l~~~G~~~~~~~  210 (249)
T 3g89_A          161 -A---P---LCVLSELLLPFLEVGGAAVAMKGPRVEEELAPLPPALERLGGRLGEVL  210 (249)
T ss_dssp             -C---C---HHHHHHHHGGGEEEEEEEEEEECSCCHHHHTTHHHHHHHHTEEEEEEE
T ss_pred             -C---C---HHHHHHHHHHHcCCCeEEEEEeCCCcHHHHHHHHHHHHHcCCeEEEEE
Confidence             2   2   246899999999999998875433345666677788889999866533

>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*

Probab=99.17  E-value=3.6e-11  Score=118.07  Aligned_cols=99  Identities=15%  Similarity=0.031  Sum_probs=71.7

Q ss_pred             CeEEEECCCCcHHHHHHhhC-CCEEEEEecCCChhHHHHHH----Hh-------C--CCCeeeecccCCC----CC--CC
Q 046488          327 RIGLDFSIGTGTFAARMREF-NVTLVSAIINLGAPFNEMIA----LR-------G--LVPLYITINQRVP----FF--DN  386 (480)
Q Consensus       327 R~VLDVGCGtG~fAa~Lae~-gV~Vv~vd~d~~~~~~~~iA----~r-------g--lip~~~~~ae~LP----Fp--d~  386 (480)
                      .+|||+|||+|.++..+++. +..++++|++.  .+.....    ..       +  .+.+..++++.++    ++  ++
T Consensus        36 ~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~--~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~  113 (313)
T 3bgv_A           36 ITVLDLGCGKGGDLLKWKKGRINKLVCTDIAD--VSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDKFRDPQM  113 (313)
T ss_dssp             CEEEEETCTTTTTHHHHHHTTCSEEEEEESCH--HHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTTTCSSTTC
T ss_pred             CEEEEECCCCcHHHHHHHhcCCCEEEEEeCCH--HHHHHHHHHHHHhhhcccccccceEEEEEecccccchhhhcccCCC
Confidence            48999999999999999876 56788888652  3322221    11       1  2344556666665    64  55


Q ss_pred             ccchheecccccCc-cChhcHHHHHHHHHhcccCCcEEEEee
Q 046488          387 TLDLIHTTRFLDGW-IDFVLLDFILYDWDRVLRPGGLLWIDS  427 (480)
Q Consensus       387 SFDlV~ss~vL~h~-~d~~~l~~~L~EI~RVLKPGG~fiI~~  427 (480)
                      +||+|+|..++++. .+......++.++.|+|||||+|++..
T Consensus       114 ~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~  155 (313)
T 3bgv_A          114 CFDICSCQFVCHYSFESYEQADMMLRNACERLSPGGYFIGTT  155 (313)
T ss_dssp             CEEEEEEETCGGGGGGSHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred             CEEEEEEecchhhccCCHHHHHHHHHHHHHHhCCCcEEEEec
Confidence            99999999988765 444444679999999999999999874

>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}

Probab=99.17  E-value=3.2e-10  Score=106.84  Aligned_cols=120  Identities=12%  Similarity=0.056  Sum_probs=84.3

Q ss_pred             HhcCCCCCCCCeEEEECCCCcHHHHHHhhC---CCEEEEEecCCChhHHH----HHHHh-C--CCCeeeecccCCCCCCC
Q 046488          317 EVLDIKPGEIRIGLDFSIGTGTFAARMREF---NVTLVSAIINLGAPFNE----MIALR-G--LVPLYITINQRVPFFDN  386 (480)
Q Consensus       317 ~vL~l~~g~iR~VLDVGCGtG~fAa~Lae~---gV~Vv~vd~d~~~~~~~----~iA~r-g--lip~~~~~ae~LPFpd~  386 (480)
                      ..+.+.++.  +|||+|||+|.++..+++.   +..+++++++.  .+..    .+... +  .+.+..++...+|++++
T Consensus        90 ~~~~~~~~~--~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~--~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~~~~~  165 (258)
T 2pwy_A           90 TLLDLAPGM--RVLEAGTGSGGLTLFLARAVGEKGLVESYEARP--HHLAQAERNVRAFWQVENVRFHLGKLEEAELEEA  165 (258)
T ss_dssp             HHTTCCTTC--EEEEECCTTSHHHHHHHHHHCTTSEEEEEESCH--HHHHHHHHHHHHHCCCCCEEEEESCGGGCCCCTT
T ss_pred             HHcCCCCCC--EEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCH--HHHHHHHHHHHHhcCCCCEEEEECchhhcCCCCC
Confidence            445555554  8999999999999999987   57888888652  2222    22222 3  23445566667788889


Q ss_pred             ccchheecccccCccChhcHHHHHHHHHhcccCCcEEEEeeccCChhhHHHHHHHHHHcCceee
Q 046488          387 TLDLIHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDSFFCAKEDMNDYLEVFKMLKYKKH  450 (480)
Q Consensus       387 SFDlV~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~f~~~~edL~~~~~~l~~lGfkkl  450 (480)
                      +||+|++     ++.+.   ..++.++.|+|||||++++...  ..+.+..+.+.++..||..+
T Consensus       166 ~~D~v~~-----~~~~~---~~~l~~~~~~L~~gG~l~~~~~--~~~~~~~~~~~l~~~gf~~~  219 (258)
T 2pwy_A          166 AYDGVAL-----DLMEP---WKVLEKAALALKPDRFLVAYLP--NITQVLELVRAAEAHPFRLE  219 (258)
T ss_dssp             CEEEEEE-----ESSCG---GGGHHHHHHHEEEEEEEEEEES--CHHHHHHHHHHHTTTTEEEE
T ss_pred             CcCEEEE-----CCcCH---HHHHHHHHHhCCCCCEEEEEeC--CHHHHHHHHHHHHHCCCceE
Confidence            9999997     23444   2489999999999999988642  23455666777788898753

>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}

Probab=99.17  E-value=9.3e-11  Score=108.51  Aligned_cols=122  Identities=16%  Similarity=0.105  Sum_probs=82.0

Q ss_pred             CeEEEECCCCcHHHHHHhhC--CCEEEEEecCCChhHHHHH---HH-----hC--CCCeeeecccCCCCCCCccchheec
Q 046488          327 RIGLDFSIGTGTFAARMREF--NVTLVSAIINLGAPFNEMI---AL-----RG--LVPLYITINQRVPFFDNTLDLIHTT  394 (480)
Q Consensus       327 R~VLDVGCGtG~fAa~Lae~--gV~Vv~vd~d~~~~~~~~i---A~-----rg--lip~~~~~ae~LPFpd~SFDlV~ss  394 (480)
                      .+|||+|||+|.++..|+++  +..+++++++.  .+...+   +.     .+  .+.+..++++.+|+++++ |.|...
T Consensus        29 ~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~--~~l~~~~~~a~~~~~~~~~~~v~~~~~d~~~l~~~~~~-d~v~~~  105 (218)
T 3mq2_A           29 DVVLDVGTGDGKHPYKVARQNPSRLVVALDADK--SRMEKISAKAAAKPAKGGLPNLLYLWATAERLPPLSGV-GELHVL  105 (218)
T ss_dssp             EEEEEESCTTCHHHHHHHHHCTTEEEEEEESCG--GGGHHHHHHHTSCGGGTCCTTEEEEECCSTTCCSCCCE-EEEEEE
T ss_pred             CEEEEecCCCCHHHHHHHHHCCCCEEEEEECCH--HHHHHHHHHHHHhhhhcCCCceEEEecchhhCCCCCCC-CEEEEE
Confidence            48999999999999999987  67888888763  333322   21     12  234456778889998887 877732


Q ss_pred             c---ccc--CccChhcHHHHHHHHHhcccCCcEEEEee----ccCCh-----------hhH-HHHHHHHHHcCceeeEEE
Q 046488          395 R---FLD--GWIDFVLLDFILYDWDRVLRPGGLLWIDS----FFCAK-----------EDM-NDYLEVFKMLKYKKHKWV  453 (480)
Q Consensus       395 ~---vL~--h~~d~~~l~~~L~EI~RVLKPGG~fiI~~----f~~~~-----------edL-~~~~~~l~~lGfkkl~W~  453 (480)
                      .   .++  |+.++   ..++.++.|+|||||++++..    |....           +.. +.+.+.++..||+...-.
T Consensus       106 ~~~~~~~~~~~~~~---~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~i~~~~  182 (218)
T 3mq2_A          106 MPWGSLLRGVLGSS---PEMLRGMAAVCRPGASFLVALNLHAWRPSVPEVGEHPEPTPDSADEWLAPRYAEAGWKLADCR  182 (218)
T ss_dssp             SCCHHHHHHHHTSS---SHHHHHHHHTEEEEEEEEEEEEGGGBTTBCGGGTTCCCCCHHHHHHHHHHHHHHTTEEEEEEE
T ss_pred             ccchhhhhhhhccH---HHHHHHHHHHcCCCcEEEEEeccccccccccccccCCccchHHHHHHHHHHHHHcCCCceeee
Confidence            2   111  33343   359999999999999999852    22111           112 337788999999866544


Q ss_pred             E
Q 046488          454 V  454 (480)
Q Consensus       454 ~  454 (480)
                      .
T Consensus       183 ~  183 (218)
T 3mq2_A          183 Y  183 (218)
T ss_dssp             E
T ss_pred             c
Confidence            3

>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*

Probab=99.17  E-value=2.4e-11  Score=122.91  Aligned_cols=121  Identities=15%  Similarity=0.075  Sum_probs=84.8

Q ss_pred             CCeEEEECCCCcHHHHHHhhC--CCEEEEEecCCChhHHHHHHHh-CCCCeeeecccCCCCCCCccchheecccccCccC
Q 046488          326 IRIGLDFSIGTGTFAARMREF--NVTLVSAIINLGAPFNEMIALR-GLVPLYITINQRVPFFDNTLDLIHTTRFLDGWID  402 (480)
Q Consensus       326 iR~VLDVGCGtG~fAa~Lae~--gV~Vv~vd~d~~~~~~~~iA~r-glip~~~~~ae~LPFpd~SFDlV~ss~vL~h~~d  402 (480)
                      ..+|||||||+|.++..++++  ++.++++|+   ..+.. .+.+ ..+.+..++... |+++  ||+|++..+++||.+
T Consensus       210 ~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~---~~~~~-~a~~~~~v~~~~~d~~~-~~~~--~D~v~~~~~lh~~~d  282 (372)
T 1fp1_D          210 ISTLVDVGGGSGRNLELIISKYPLIKGINFDL---PQVIE-NAPPLSGIEHVGGDMFA-SVPQ--GDAMILKAVCHNWSD  282 (372)
T ss_dssp             CSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC---HHHHT-TCCCCTTEEEEECCTTT-CCCC--EEEEEEESSGGGSCH
T ss_pred             CCEEEEeCCCCcHHHHHHHHHCCCCeEEEeCh---HHHHH-hhhhcCCCEEEeCCccc-CCCC--CCEEEEecccccCCH
Confidence            358999999999999999986  466666664   22322 2211 224445555544 6655  999999999999987


Q ss_pred             hhcHHHHHHHHHhcccCCcEEEEeeccCCh--------------------------hhHHHHHHHHHHcCceeeEEEE
Q 046488          403 FVLLDFILYDWDRVLRPGGLLWIDSFFCAK--------------------------EDMNDYLEVFKMLKYKKHKWVV  454 (480)
Q Consensus       403 ~~~l~~~L~EI~RVLKPGG~fiI~~f~~~~--------------------------edL~~~~~~l~~lGfkkl~W~~  454 (480)
                      +.. ..+|.++.|+|||||+++|.++....                          ...++|.++++..||+.+.+..
T Consensus       283 ~~~-~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~  359 (372)
T 1fp1_D          283 EKC-IEFLSNCHKALSPNGKVIIVEFILPEEPNTSEESKLVSTLDNLMFITVGGRERTEKQYEKLSKLSGFSKFQVAC  359 (372)
T ss_dssp             HHH-HHHHHHHHHHEEEEEEEEEEEEEECSSCCSSHHHHHHHHHHHHHHHHHSCCCEEHHHHHHHHHHTTCSEEEEEE
T ss_pred             HHH-HHHHHHHHHhcCCCCEEEEEEeccCCCCccchHHHHHHHhhHHHHhccCCccCCHHHHHHHHHHCCCceEEEEE
Confidence            642 47999999999999999987432110                          0124577889999998876543

>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}

Probab=99.16  E-value=1.7e-10  Score=104.41  Aligned_cols=142  Identities=15%  Similarity=0.133  Sum_probs=82.9

Q ss_pred             CCCCCCCeEEEECCCCcHHHHHHhhC-C----------CEEEEEecCCChhHHHHHHHhCCCCee-eecccCCC------
Q 046488          321 IKPGEIRIGLDFSIGTGTFAARMREF-N----------VTLVSAIINLGAPFNEMIALRGLVPLY-ITINQRVP------  382 (480)
Q Consensus       321 l~~g~iR~VLDVGCGtG~fAa~Lae~-g----------V~Vv~vd~d~~~~~~~~iA~rglip~~-~~~ae~LP------  382 (480)
                      +.++  .+|||+|||+|.++..++++ +          ..+++++++....       ...+... .++....+      
T Consensus        20 ~~~~--~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~~-------~~~~~~~~~~d~~~~~~~~~~~   90 (196)
T 2nyu_A           20 LRPG--LRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIFP-------LEGATFLCPADVTDPRTSQRIL   90 (196)
T ss_dssp             CCTT--CEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCCC-------CTTCEEECSCCTTSHHHHHHHH
T ss_pred             CCCC--CEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhccc-------CCCCeEEEeccCCCHHHHHHHH
Confidence            3444  48999999999999999886 4          6788888764211       0122333 33332222      


Q ss_pred             --CCCCccchheecccccC---c-cChh----cHHHHHHHHHhcccCCcEEEEeeccCChhhHHHHHHHHHHcCceeeEE
Q 046488          383 --FFDNTLDLIHTTRFLDG---W-IDFV----LLDFILYDWDRVLRPGGLLWIDSFFCAKEDMNDYLEVFKMLKYKKHKW  452 (480)
Q Consensus       383 --Fpd~SFDlV~ss~vL~h---~-~d~~----~l~~~L~EI~RVLKPGG~fiI~~f~~~~edL~~~~~~l~~lGfkkl~W  452 (480)
                        +++++||+|+|..+++.   + .+..    ....++.++.|+|||||+|++..+...  +...+...+... |..+.+
T Consensus        91 ~~~~~~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~--~~~~~~~~l~~~-f~~v~~  167 (196)
T 2nyu_A           91 EVLPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKTWAGS--QSRRLQRRLTEE-FQNVRI  167 (196)
T ss_dssp             HHSGGGCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCSG--GGHHHHHHHHHH-EEEEEE
T ss_pred             HhcCCCCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEecCCc--cHHHHHHHHHHH-hcceEE
Confidence              45679999998654432   2 1211    013689999999999999999766543  333444444442 666654


Q ss_pred             EEeeccCCCCcceeEEEEEEeC
Q 046488          453 VVVPKRDKDDREVFFSAVLEKP  474 (480)
Q Consensus       453 ~~~~k~d~~~~E~~lsav~qKP  474 (480)
                      ...........|.|+.+...|-
T Consensus       168 ~~~~~~~~~~~e~~~v~~g~~~  189 (196)
T 2nyu_A          168 IKPEASRKESSEVYFLATQYHG  189 (196)
T ss_dssp             ECCC--------EEEEEEEECC
T ss_pred             ECCcccCccCceEEEEeeecCC
Confidence            3321111234688877665553

>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*

Probab=99.15  E-value=1.5e-10  Score=111.64  Aligned_cols=117  Identities=12%  Similarity=0.098  Sum_probs=82.0

Q ss_pred             CeEEEECCCCcHHHHHHhhCCCEEEEEecCCChh--HHHHHHHhCC-CCeeeecccCCCCCCCccchheecccccCccCh
Q 046488          327 RIGLDFSIGTGTFAARMREFNVTLVSAIINLGAP--FNEMIALRGL-VPLYITINQRVPFFDNTLDLIHTTRFLDGWIDF  403 (480)
Q Consensus       327 R~VLDVGCGtG~fAa~Lae~gV~Vv~vd~d~~~~--~~~~iA~rgl-ip~~~~~ae~LPFpd~SFDlV~ss~vL~h~~d~  403 (480)
                      .+|||+|||+|.++..+++.|..+++++++....  +...+...+. +.+..+.... ++++++||+|+++...++    
T Consensus       122 ~~VLDiGcG~G~l~~~la~~g~~v~gvDi~~~~v~~a~~n~~~~~~~v~~~~~d~~~-~~~~~~fD~Vv~n~~~~~----  196 (254)
T 2nxc_A          122 DKVLDLGTGSGVLAIAAEKLGGKALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEA-ALPFGPFDLLVANLYAEL----  196 (254)
T ss_dssp             CEEEEETCTTSHHHHHHHHTTCEEEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHH-HGGGCCEEEEEEECCHHH----
T ss_pred             CEEEEecCCCcHHHHHHHHhCCeEEEEECCHHHHHHHHHHHHHcCCcEEEEECChhh-cCcCCCCCEEEECCcHHH----
Confidence            4899999999999999999888888888764221  1122222232 3344444332 255789999998654322    


Q ss_pred             hcHHHHHHHHHhcccCCcEEEEeeccCChhhHHHHHHHHHHcCceeeEE
Q 046488          404 VLLDFILYDWDRVLRPGGLLWIDSFFCAKEDMNDYLEVFKMLKYKKHKW  452 (480)
Q Consensus       404 ~~l~~~L~EI~RVLKPGG~fiI~~f~~~~edL~~~~~~l~~lGfkkl~W  452 (480)
                        +..++.++.|+|||||+++++.+..  .+.+.+.+.+++.||+....
T Consensus       197 --~~~~l~~~~~~LkpgG~lils~~~~--~~~~~v~~~l~~~Gf~~~~~  241 (254)
T 2nxc_A          197 --HAALAPRYREALVPGGRALLTGILK--DRAPLVREAMAGAGFRPLEE  241 (254)
T ss_dssp             --HHHHHHHHHHHEEEEEEEEEEEEEG--GGHHHHHHHHHHTTCEEEEE
T ss_pred             --HHHHHHHHHHHcCCCCEEEEEeecc--CCHHHHHHHHHHCCCEEEEE
Confidence              2568999999999999999976553  34566778889999987654

>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*

Probab=99.14  E-value=8.4e-11  Score=117.85  Aligned_cols=122  Identities=16%  Similarity=0.084  Sum_probs=84.7

Q ss_pred             CCeEEEECCCCcHHHHHHhhC--CCEEEEEecCCChhHHHHHHHhCCCCeeeecccCCCCCCCccchheecccccCccCh
Q 046488          326 IRIGLDFSIGTGTFAARMREF--NVTLVSAIINLGAPFNEMIALRGLVPLYITINQRVPFFDNTLDLIHTTRFLDGWIDF  403 (480)
Q Consensus       326 iR~VLDVGCGtG~fAa~Lae~--gV~Vv~vd~d~~~~~~~~iA~rglip~~~~~ae~LPFpd~SFDlV~ss~vL~h~~d~  403 (480)
                      ..+|||||||+|.++..++++  +..++++|+   ..+.........+.+..++... ++++  ||+|++..+++||.+.
T Consensus       189 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~---~~~~~~a~~~~~v~~~~~d~~~-~~p~--~D~v~~~~~lh~~~d~  262 (352)
T 1fp2_A          189 LESIVDVGGGTGTTAKIICETFPKLKCIVFDR---PQVVENLSGSNNLTYVGGDMFT-SIPN--ADAVLLKYILHNWTDK  262 (352)
T ss_dssp             CSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC---HHHHTTCCCBTTEEEEECCTTT-CCCC--CSEEEEESCGGGSCHH
T ss_pred             CceEEEeCCCccHHHHHHHHHCCCCeEEEeeC---HHHHhhcccCCCcEEEeccccC-CCCC--ccEEEeehhhccCCHH
Confidence            358999999999999999876  567777774   2232211111224444555433 5553  9999999999999765


Q ss_pred             hcHHHHHHHHHhcccC---CcEEEEeeccCCh-------------------------hhHHHHHHHHHHcCceeeEEEE
Q 046488          404 VLLDFILYDWDRVLRP---GGLLWIDSFFCAK-------------------------EDMNDYLEVFKMLKYKKHKWVV  454 (480)
Q Consensus       404 ~~l~~~L~EI~RVLKP---GG~fiI~~f~~~~-------------------------edL~~~~~~l~~lGfkkl~W~~  454 (480)
                      .. ..+|+++.|+|||   ||+++|.++....                         ...++|.++++..||+.+....
T Consensus       263 ~~-~~~l~~~~~~L~p~~~gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~  340 (352)
T 1fp2_A          263 DC-LRILKKCKEAVTNDGKRGKVTIIDMVIDKKKDENQVTQIKLLMDVNMACLNGKERNEEEWKKLFIEAGFQHYKISP  340 (352)
T ss_dssp             HH-HHHHHHHHHHHSGGGCCCEEEEEECEECTTTSCHHHHHHHHHHHHHGGGGTCCCEEHHHHHHHHHHTTCCEEEEEE
T ss_pred             HH-HHHHHHHHHhCCCCCCCcEEEEEEeecCCCCCccchhhhHhhccHHHHhccCCCCCHHHHHHHHHHCCCCeeEEEe
Confidence            42 4799999999999   9999987543211                         0124677899999998776443

>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53

Probab=99.14  E-value=1.7e-10  Score=108.10  Aligned_cols=119  Identities=13%  Similarity=0.137  Sum_probs=78.0

Q ss_pred             CeEEEECCCCcHHHHHHhhC--CCEEEEEecCCChhHHH----HHHHhCC--CCeeeecccCCC--CCCCccchheeccc
Q 046488          327 RIGLDFSIGTGTFAARMREF--NVTLVSAIINLGAPFNE----MIALRGL--VPLYITINQRVP--FFDNTLDLIHTTRF  396 (480)
Q Consensus       327 R~VLDVGCGtG~fAa~Lae~--gV~Vv~vd~d~~~~~~~----~iA~rgl--ip~~~~~ae~LP--Fpd~SFDlV~ss~v  396 (480)
                      .+|||||||+|.++..|++.  +..+++++++.  .+..    .+...+.  +.++.+++..++  +++++||.|++.+.
T Consensus        40 ~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~--~~l~~a~~~~~~~~~~nv~~~~~d~~~l~~~~~~~~~d~v~~~~~  117 (213)
T 2fca_A           40 PIHIEVGTGKGQFISGMAKQNPDINYIGIELFK--SVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNFS  117 (213)
T ss_dssp             CEEEEECCTTSHHHHHHHHHCTTSEEEEECSCH--HHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEESC
T ss_pred             ceEEEEecCCCHHHHHHHHHCCCCCEEEEEech--HHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCcCCcCEEEEECC
Confidence            47999999999999999986  67888888653  3322    2222333  334456666676  78999999987543


Q ss_pred             ccCccChh------cHHHHHHHHHhcccCCcEEEEeeccCChhhHHHHHHHHHHcCceee
Q 046488          397 LDGWIDFV------LLDFILYDWDRVLRPGGLLWIDSFFCAKEDMNDYLEVFKMLKYKKH  450 (480)
Q Consensus       397 L~h~~d~~------~l~~~L~EI~RVLKPGG~fiI~~f~~~~edL~~~~~~l~~lGfkkl  450 (480)
                      . +|....      ....++.++.|+|||||.|++..-  .....+...+.++..||...
T Consensus       118 ~-p~~~~~~~~~rl~~~~~l~~~~~~LkpgG~l~~~td--~~~~~~~~~~~~~~~g~~~~  174 (213)
T 2fca_A          118 D-PWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKTD--NRGLFEYSLKSFSEYGLLLT  174 (213)
T ss_dssp             C-CCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEES--CHHHHHHHHHHHHHHTCEEE
T ss_pred             C-CCcCccccccccCcHHHHHHHHHHcCCCCEEEEEeC--CHHHHHHHHHHHHHCCCccc
Confidence            2 332210      014689999999999999988531  11112344566677787643

>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*

Probab=99.14  E-value=9.6e-11  Score=118.13  Aligned_cols=99  Identities=18%  Similarity=0.165  Sum_probs=70.1

Q ss_pred             CeEEEECCCCcHHHHHHhhCCC-EEEEEecCCChh-HHHHHHHhC---CCCeeeecccCCCCCCCccchheecccccCcc
Q 046488          327 RIGLDFSIGTGTFAARMREFNV-TLVSAIINLGAP-FNEMIALRG---LVPLYITINQRVPFFDNTLDLIHTTRFLDGWI  401 (480)
Q Consensus       327 R~VLDVGCGtG~fAa~Lae~gV-~Vv~vd~d~~~~-~~~~iA~rg---lip~~~~~ae~LPFpd~SFDlV~ss~vL~h~~  401 (480)
                      .+|||||||+|.++..+++.|. .+++++++.... +...+...+   .+.+..++++.+++++++||+|++..+...+.
T Consensus        66 ~~VLDiGcGtG~ls~~la~~g~~~v~gvD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Ivs~~~~~~l~  145 (340)
T 2fyt_A           66 KVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEVHLPVEKVDVIISEWMGYFLL  145 (340)
T ss_dssp             CEEEEETCTTSHHHHHHHHTTCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSCSCEEEEEECCCBTTBT
T ss_pred             CEEEEeeccCcHHHHHHHHcCCCEEEEEChHHHHHHHHHHHHHcCCCCcEEEEEeeHHHhcCCCCcEEEEEEcCchhhcc
Confidence            4899999999999999998875 788888762111 111222223   24455677888999999999999866322222


Q ss_pred             ChhcHHHHHHHHHhcccCCcEEEE
Q 046488          402 DFVLLDFILYDWDRVLRPGGLLWI  425 (480)
Q Consensus       402 d~~~l~~~L~EI~RVLKPGG~fiI  425 (480)
                      ....+..++.++.|+|||||+++.
T Consensus       146 ~~~~~~~~l~~~~~~LkpgG~lip  169 (340)
T 2fyt_A          146 FESMLDSVLYAKNKYLAKGGSVYP  169 (340)
T ss_dssp             TTCHHHHHHHHHHHHEEEEEEEES
T ss_pred             CHHHHHHHHHHHHhhcCCCcEEEc
Confidence            222336799999999999999873

>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}

Probab=99.14  E-value=4.6e-10  Score=99.29  Aligned_cols=118  Identities=9%  Similarity=0.051  Sum_probs=82.5

Q ss_pred             HhcCCCCCCCCeEEEECCCCcHHHHHHhhCCCEEEEEecCCChhHHH----HHHHhCC--CCeeeecccCCCCCCCccch
Q 046488          317 EVLDIKPGEIRIGLDFSIGTGTFAARMREFNVTLVSAIINLGAPFNE----MIALRGL--VPLYITINQRVPFFDNTLDL  390 (480)
Q Consensus       317 ~vL~l~~g~iR~VLDVGCGtG~fAa~Lae~gV~Vv~vd~d~~~~~~~----~iA~rgl--ip~~~~~ae~LPFpd~SFDl  390 (480)
                      +.+.+.++  .+|||+|||+|.++..+++.+..+++++++.  .+..    .+...+.  +.+..++... ++++++||+
T Consensus        29 ~~~~~~~~--~~vLdiG~G~G~~~~~l~~~~~~v~~vD~~~--~~~~~a~~~~~~~~~~~~~~~~~d~~~-~~~~~~~D~  103 (183)
T 2yxd_A           29 GKLNLNKD--DVVVDVGCGSGGMTVEIAKRCKFVYAIDYLD--GAIEVTKQNLAKFNIKNCQIIKGRAED-VLDKLEFNK  103 (183)
T ss_dssp             HHHCCCTT--CEEEEESCCCSHHHHHHHTTSSEEEEEECSH--HHHHHHHHHHHHTTCCSEEEEESCHHH-HGGGCCCSE
T ss_pred             HHcCCCCC--CEEEEeCCCCCHHHHHHHhcCCeEEEEeCCH--HHHHHHHHHHHHcCCCcEEEEECCccc-cccCCCCcE
Confidence            44455444  4899999999999999998777888888762  2222    2222232  3344455444 677789999


Q ss_pred             heecccccCccChhcHHHHHHHHHhcccCCcEEEEeeccCChhhHHHHHHHHHHcCceee
Q 046488          391 IHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDSFFCAKEDMNDYLEVFKMLKYKKH  450 (480)
Q Consensus       391 V~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~f~~~~edL~~~~~~l~~lGfkkl  450 (480)
                      |++..+    .+   ...++.++.|+  |||++++...  ..+....+.+.++..||.-.
T Consensus       104 i~~~~~----~~---~~~~l~~~~~~--~gG~l~~~~~--~~~~~~~~~~~l~~~g~~~~  152 (183)
T 2yxd_A          104 AFIGGT----KN---IEKIIEILDKK--KINHIVANTI--VLENAAKIINEFESRGYNVD  152 (183)
T ss_dssp             EEECSC----SC---HHHHHHHHHHT--TCCEEEEEES--CHHHHHHHHHHHHHTTCEEE
T ss_pred             EEECCc----cc---HHHHHHHHhhC--CCCEEEEEec--ccccHHHHHHHHHHcCCeEE
Confidence            999876    22   25689999999  9999998753  34456667888899997533

>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*

Probab=99.12  E-value=5.4e-10  Score=112.94  Aligned_cols=121  Identities=15%  Similarity=0.188  Sum_probs=84.4

Q ss_pred             CCCeEEEECCCCcHHHHHHhhC--CCEEEEEecCCChhHHHHHHHh-------CCCCeeeecccCCCCCCCccchheecc
Q 046488          325 EIRIGLDFSIGTGTFAARMREF--NVTLVSAIINLGAPFNEMIALR-------GLVPLYITINQRVPFFDNTLDLIHTTR  395 (480)
Q Consensus       325 ~iR~VLDVGCGtG~fAa~Lae~--gV~Vv~vd~d~~~~~~~~iA~r-------glip~~~~~ae~LPFpd~SFDlV~ss~  395 (480)
                      ..++|||||||+|.++..++++  ++.++..+.   +.. ...|.+       ..+.++.++....|++  .+|++++.+
T Consensus       179 ~~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dl---p~v-~~~a~~~~~~~~~~rv~~~~gD~~~~~~~--~~D~~~~~~  252 (353)
T 4a6d_A          179 VFPLMCDLGGGAGALAKECMSLYPGCKITVFDI---PEV-VWTAKQHFSFQEEEQIDFQEGDFFKDPLP--EADLYILAR  252 (353)
T ss_dssp             GCSEEEEETCTTSHHHHHHHHHCSSCEEEEEEC---HHH-HHHHHHHSCC--CCSEEEEESCTTTSCCC--CCSEEEEES
T ss_pred             cCCeEEeeCCCCCHHHHHHHHhCCCceeEeccC---HHH-HHHHHHhhhhcccCceeeecCccccCCCC--CceEEEeee
Confidence            3468999999999999999987  455555543   222 222222       1234444554334444  479999999


Q ss_pred             cccCccChhcHHHHHHHHHhcccCCcEEEEeeccCChh-----------------------hHHHHHHHHHHcCceeeEE
Q 046488          396 FLDGWIDFVLLDFILYDWDRVLRPGGLLWIDSFFCAKE-----------------------DMNDYLEVFKMLKYKKHKW  452 (480)
Q Consensus       396 vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~f~~~~e-----------------------dL~~~~~~l~~lGfkkl~W  452 (480)
                      +||+|.++.. ..+|++++++|+|||+++|.+..-..+                       ..++|.+++++.||+.++.
T Consensus       253 vlh~~~d~~~-~~iL~~~~~al~pgg~lli~e~~~~~~~~~~~~~~~~dl~ml~~~~g~ert~~e~~~ll~~AGf~~v~v  331 (353)
T 4a6d_A          253 VLHDWADGKC-SHLLERIYHTCKPGGGILVIESLLDEDRRGPLLTQLYSLNMLVQTEGQERTPTHYHMLLSSAGFRDFQF  331 (353)
T ss_dssp             SGGGSCHHHH-HHHHHHHHHHCCTTCEEEEEECCCCTTSCCCHHHHHHHHHHHHSSSCCCCCHHHHHHHHHHHTCEEEEE
T ss_pred             ecccCCHHHH-HHHHHHHHhhCCCCCEEEEEEeeeCCCCCCCHHHHHHHHHHHHhCCCcCCCHHHHHHHHHHCCCceEEE
Confidence            9999987653 568999999999999999875432110                       1246888999999998864

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33

Probab=99.12  E-value=8.7e-11  Score=112.10  Aligned_cols=90  Identities=21%  Similarity=0.288  Sum_probs=69.0

Q ss_pred             CeEEEECCCCcHHHHHHhhC--CCEEEEEecCCChhHHHHHHHhC-CCCeeeecccCCCCCCCccchheecccccCccCh
Q 046488          327 RIGLDFSIGTGTFAARMREF--NVTLVSAIINLGAPFNEMIALRG-LVPLYITINQRVPFFDNTLDLIHTTRFLDGWIDF  403 (480)
Q Consensus       327 R~VLDVGCGtG~fAa~Lae~--gV~Vv~vd~d~~~~~~~~iA~rg-lip~~~~~ae~LPFpd~SFDlV~ss~vL~h~~d~  403 (480)
                      .+|||+|||+|.++..+++.  +..+++++++  ..+......+. .+.+..++.+.+|+++++||+|++..+.      
T Consensus        87 ~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s--~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~~------  158 (269)
T 1p91_A           87 TAVLDIGCGEGYYTHAFADALPEITTFGLDVS--KVAIKAAAKRYPQVTFCVASSHRLPFSDTSMDAIIRIYAP------  158 (269)
T ss_dssp             CEEEEETCTTSTTHHHHHHTCTTSEEEEEESC--HHHHHHHHHHCTTSEEEECCTTSCSBCTTCEEEEEEESCC------
T ss_pred             CEEEEECCCCCHHHHHHHHhCCCCeEEEEeCC--HHHHHHHHHhCCCcEEEEcchhhCCCCCCceeEEEEeCCh------
Confidence            48999999999999999987  7788888865  23333333332 2445566778899999999999986541      


Q ss_pred             hcHHHHHHHHHhcccCCcEEEEeec
Q 046488          404 VLLDFILYDWDRVLRPGGLLWIDSF  428 (480)
Q Consensus       404 ~~l~~~L~EI~RVLKPGG~fiI~~f  428 (480)
                          .++.|+.|+|||||++++...
T Consensus       159 ----~~l~~~~~~L~pgG~l~~~~~  179 (269)
T 1p91_A          159 ----CKAEELARVVKPGGWVITATP  179 (269)
T ss_dssp             ----CCHHHHHHHEEEEEEEEEEEE
T ss_pred             ----hhHHHHHHhcCCCcEEEEEEc
Confidence                158999999999999988743

>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}

Probab=99.12  E-value=1.4e-10  Score=118.34  Aligned_cols=99  Identities=16%  Similarity=0.205  Sum_probs=72.5

Q ss_pred             CeEEEECCCCcHHHHHHhhCCC-EEEEEecCCChhHHHH-HHHhCC---CCeeeecccCCCCCCCccchheecccccCcc
Q 046488          327 RIGLDFSIGTGTFAARMREFNV-TLVSAIINLGAPFNEM-IALRGL---VPLYITINQRVPFFDNTLDLIHTTRFLDGWI  401 (480)
Q Consensus       327 R~VLDVGCGtG~fAa~Lae~gV-~Vv~vd~d~~~~~~~~-iA~rgl---ip~~~~~ae~LPFpd~SFDlV~ss~vL~h~~  401 (480)
                      .+|||||||+|.++..++++|. .+++++++.......+ +...+.   +.++.++++.++++ ++||+|++..+.+...
T Consensus        65 ~~VLDlGcGtG~ls~~la~~g~~~V~gvD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~D~Iv~~~~~~~l~  143 (376)
T 3r0q_C           65 KTVLDVGTGSGILAIWSAQAGARKVYAVEATKMADHARALVKANNLDHIVEVIEGSVEDISLP-EKVDVIISEWMGYFLL  143 (376)
T ss_dssp             CEEEEESCTTTHHHHHHHHTTCSEEEEEESSTTHHHHHHHHHHTTCTTTEEEEESCGGGCCCS-SCEEEEEECCCBTTBT
T ss_pred             CEEEEeccCcCHHHHHHHhcCCCEEEEEccHHHHHHHHHHHHHcCCCCeEEEEECchhhcCcC-CcceEEEEcChhhccc
Confidence            5899999999999999999877 8899987621122222 233332   34556778888877 8999999965444443


Q ss_pred             ChhcHHHHHHHHHhcccCCcEEEEe
Q 046488          402 DFVLLDFILYDWDRVLRPGGLLWID  426 (480)
Q Consensus       402 d~~~l~~~L~EI~RVLKPGG~fiI~  426 (480)
                      ....+..++.+++|+|||||++++.
T Consensus       144 ~e~~~~~~l~~~~~~LkpgG~li~~  168 (376)
T 3r0q_C          144 RESMFDSVISARDRWLKPTGVMYPS  168 (376)
T ss_dssp             TTCTHHHHHHHHHHHEEEEEEEESS
T ss_pred             chHHHHHHHHHHHhhCCCCeEEEEe
Confidence            3333467999999999999999875

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=99.12  E-value=1.1e-10  Score=117.33  Aligned_cols=100  Identities=9%  Similarity=0.064  Sum_probs=69.4

Q ss_pred             hcCCCCCCCCeEEEECCCCcHHHHH-Hhh-CCCEEEEEecCCCh--hHHHHHHHhCC--CCeeeecccCCCCCCCccchh
Q 046488          318 VLDIKPGEIRIGLDFSIGTGTFAAR-MRE-FNVTLVSAIINLGA--PFNEMIALRGL--VPLYITINQRVPFFDNTLDLI  391 (480)
Q Consensus       318 vL~l~~g~iR~VLDVGCGtG~fAa~-Lae-~gV~Vv~vd~d~~~--~~~~~iA~rgl--ip~~~~~ae~LPFpd~SFDlV  391 (480)
                      ++.++++.  +|||||||+|.+++. +++ .|..|++++++...  .+...+++.+.  +.+..+++..+|  +++||+|
T Consensus       117 la~l~~g~--rVLDIGcG~G~~ta~~lA~~~ga~V~gIDis~~~l~~Ar~~~~~~gl~~v~~v~gDa~~l~--d~~FDvV  192 (298)
T 3fpf_A          117 LGRFRRGE--RAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLGVDGVNVITGDETVID--GLEFDVL  192 (298)
T ss_dssp             HTTCCTTC--EEEEECCCSSCHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHHTCCSEEEEESCGGGGG--GCCCSEE
T ss_pred             HcCCCCcC--EEEEECCCccHHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEECchhhCC--CCCcCEE
Confidence            56677765  899999999987654 454 38889998876311  11222233343  344556666665  8999999


Q ss_pred             eecccccCccChhcHHHHHHHHHhcccCCcEEEEee
Q 046488          392 HTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDS  427 (480)
Q Consensus       392 ~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~  427 (480)
                      ++...   ..+.   ..++.|+.|+|||||++++..
T Consensus       193 ~~~a~---~~d~---~~~l~el~r~LkPGG~Lvv~~  222 (298)
T 3fpf_A          193 MVAAL---AEPK---RRVFRNIHRYVDTETRIIYRT  222 (298)
T ss_dssp             EECTT---CSCH---HHHHHHHHHHCCTTCEEEEEE
T ss_pred             EECCC---ccCH---HHHHHHHHHHcCCCcEEEEEc
Confidence            97544   2333   579999999999999999875

>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}

Probab=99.11  E-value=5e-11  Score=108.20  Aligned_cols=121  Identities=12%  Similarity=0.054  Sum_probs=71.5

Q ss_pred             CeEEEECCCCcHHHHHHhhC--CCEEEEEecCCChh--HHHHHHHhC-CCCeeeecccCCCCCC-----Cccchheeccc
Q 046488          327 RIGLDFSIGTGTFAARMREF--NVTLVSAIINLGAP--FNEMIALRG-LVPLYITINQRVPFFD-----NTLDLIHTTRF  396 (480)
Q Consensus       327 R~VLDVGCGtG~fAa~Lae~--gV~Vv~vd~d~~~~--~~~~iA~rg-lip~~~~~ae~LPFpd-----~SFDlV~ss~v  396 (480)
                      .+|||+|||+|.++..+++.  +..+++++++...-  +...+...+ .+.+..+++.. ++++     ++||+|++.-.
T Consensus        32 ~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~-~~~~~~~~~~~fD~i~~npp  110 (215)
T 4dzr_A           32 TRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAERFGAVVDWAAADGIE-WLIERAERGRPWHAIVSNPP  110 (215)
T ss_dssp             EEEEEEESSBCHHHHHHHHHCTTEEEEEEECC-------------------CCHHHHHH-HHHHHHHTTCCBSEEEECCC
T ss_pred             CEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhCCceEEEEcchHh-hhhhhhhccCcccEEEECCC
Confidence            58999999999999999987  56888888763211  111111112 13334444444 6666     99999999543


Q ss_pred             ccC------ccChh-----------------cHHHHHHHHHhcccCCcE-EEEeeccCChhhHHHHHHHHH--HcCceee
Q 046488          397 LDG------WIDFV-----------------LLDFILYDWDRVLRPGGL-LWIDSFFCAKEDMNDYLEVFK--MLKYKKH  450 (480)
Q Consensus       397 L~h------~~d~~-----------------~l~~~L~EI~RVLKPGG~-fiI~~f~~~~edL~~~~~~l~--~lGfkkl  450 (480)
                      +++      +....                 ....++.++.|+|||||+ +++..-   ....+.+.++++  ..||..+
T Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~---~~~~~~~~~~l~~~~~gf~~~  187 (215)
T 4dzr_A          111 YIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRAGVFLEVG---HNQADEVARLFAPWRERGFRV  187 (215)
T ss_dssp             CCC------------------------CTTHHHHHHHTCCGGGBCSSSEEEEEECT---TSCHHHHHHHTGGGGGGTEEC
T ss_pred             CCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCCCeEEEEEEC---CccHHHHHHHHHHhhcCCceE
Confidence            322      11110                 014688999999999999 555322   223345666777  7788765


Q ss_pred             E
Q 046488          451 K  451 (480)
Q Consensus       451 ~  451 (480)
                      .
T Consensus       188 ~  188 (215)
T 4dzr_A          188 R  188 (215)
T ss_dssp             C
T ss_pred             E
Confidence            4

>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}

Probab=99.11  E-value=1.4e-10  Score=106.47  Aligned_cols=97  Identities=18%  Similarity=0.071  Sum_probs=70.8

Q ss_pred             HhcCCCCCCCCeEEEECCCCcHHHHHHhhCCCEEEEEecCCChhHHH----HHHHhCC--CCeeeecccCCCCCCCccch
Q 046488          317 EVLDIKPGEIRIGLDFSIGTGTFAARMREFNVTLVSAIINLGAPFNE----MIALRGL--VPLYITINQRVPFFDNTLDL  390 (480)
Q Consensus       317 ~vL~l~~g~iR~VLDVGCGtG~fAa~Lae~gV~Vv~vd~d~~~~~~~----~iA~rgl--ip~~~~~ae~LPFpd~SFDl  390 (480)
                      +.+.+.++  .+|||+|||+|.++..+++.+..+++++++.  .+..    .+...+.  +.+..++....+..+++||+
T Consensus        71 ~~l~~~~~--~~vLdiG~G~G~~~~~la~~~~~v~~vD~~~--~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~  146 (210)
T 3lbf_A           71 ELLELTPQ--SRVLEIGTGSGYQTAILAHLVQHVCSVERIK--GLQWQARRRLKNLDLHNVSTRHGDGWQGWQARAPFDA  146 (210)
T ss_dssp             HHTTCCTT--CEEEEECCTTSHHHHHHHHHSSEEEEEESCH--HHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCCEEE
T ss_pred             HhcCCCCC--CEEEEEcCCCCHHHHHHHHhCCEEEEEecCH--HHHHHHHHHHHHcCCCceEEEECCcccCCccCCCccE
Confidence            45555555  4899999999999999999888888888762  2222    2222232  33445566666667899999


Q ss_pred             heecccccCccChhcHHHHHHHHHhcccCCcEEEEe
Q 046488          391 IHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWID  426 (480)
Q Consensus       391 V~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~  426 (480)
                      |++..+++++.+         ++.++|||||++++.
T Consensus       147 i~~~~~~~~~~~---------~~~~~L~pgG~lv~~  173 (210)
T 3lbf_A          147 IIVTAAPPEIPT---------ALMTQLDEGGILVLP  173 (210)
T ss_dssp             EEESSBCSSCCT---------HHHHTEEEEEEEEEE
T ss_pred             EEEccchhhhhH---------HHHHhcccCcEEEEE
Confidence            999988877653         578999999999885

>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38

Probab=99.10  E-value=6.8e-10  Score=110.79  Aligned_cols=135  Identities=18%  Similarity=0.163  Sum_probs=84.7

Q ss_pred             hhhHHHhcCCCCCCCCeEEEECCCCcHHHHHHhhC---CCEEEEEecCCChhHHH----HHHHhCC--CCeeeecccCCC
Q 046488          312 DFLIPEVLDIKPGEIRIGLDFSIGTGTFAARMREF---NVTLVSAIINLGAPFNE----MIALRGL--VPLYITINQRVP  382 (480)
Q Consensus       312 d~~I~~vL~l~~g~iR~VLDVGCGtG~fAa~Lae~---gV~Vv~vd~d~~~~~~~----~iA~rgl--ip~~~~~ae~LP  382 (480)
                      ..++..++++.++.  +|||+|||+|..+..+++.   +..+++++++.  .+..    .+...+.  +.+..+++..++
T Consensus       107 s~l~~~~l~~~~g~--~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~--~~l~~a~~~~~~~g~~~v~~~~~D~~~~~  182 (315)
T 1ixk_A          107 SMYPPVALDPKPGE--IVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDE--NRLRETRLNLSRLGVLNVILFHSSSLHIG  182 (315)
T ss_dssp             HHHHHHHHCCCTTC--EEEECCSSCSHHHHHHHHHTTTCSEEEEECSCH--HHHHHHHHHHHHHTCCSEEEESSCGGGGG
T ss_pred             HHHHHHHhCCCCCC--EEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCH--HHHHHHHHHHHHhCCCeEEEEECChhhcc
Confidence            33455677777664  8999999999999999874   35788887652  2222    2222233  234445566676


Q ss_pred             CCCCccchheec------ccccCccC------hh-------cHHHHHHHHHhcccCCcEEEEeecc-CChhhHHHHHHHH
Q 046488          383 FFDNTLDLIHTT------RFLDGWID------FV-------LLDFILYDWDRVLRPGGLLWIDSFF-CAKEDMNDYLEVF  442 (480)
Q Consensus       383 Fpd~SFDlV~ss------~vL~h~~d------~~-------~l~~~L~EI~RVLKPGG~fiI~~f~-~~~edL~~~~~~l  442 (480)
                      ..+++||+|++.      .++.+.++      ..       ....+|.++.|+|||||+++++... ...+....+..++
T Consensus       183 ~~~~~fD~Il~d~Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~stcs~~~~Ene~~v~~~l  262 (315)
T 1ixk_A          183 ELNVEFDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSLEPEENEFVIQWAL  262 (315)
T ss_dssp             GGCCCEEEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCCGGGTHHHHHHHH
T ss_pred             cccccCCEEEEeCCCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCCCChHHhHHHHHHHH
Confidence            667899999973      22322111      00       0136899999999999999987532 2233333455667


Q ss_pred             HHcCceee
Q 046488          443 KMLKYKKH  450 (480)
Q Consensus       443 ~~lGfkkl  450 (480)
                      ++.||+.+
T Consensus       263 ~~~~~~~~  270 (315)
T 1ixk_A          263 DNFDVELL  270 (315)
T ss_dssp             HHSSEEEE
T ss_pred             hcCCCEEe
Confidence            77787644

>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*

Probab=99.10  E-value=7.2e-11  Score=123.84  Aligned_cols=108  Identities=13%  Similarity=0.065  Sum_probs=74.2

Q ss_pred             hcCCCCCCCCeEEEECCCCcHHHHHHhhC-CCE-EEEEecCCChh--HHHHH-------HHhC----CCCeeeecccCCC
Q 046488          318 VLDIKPGEIRIGLDFSIGTGTFAARMREF-NVT-LVSAIINLGAP--FNEMI-------ALRG----LVPLYITINQRVP  382 (480)
Q Consensus       318 vL~l~~g~iR~VLDVGCGtG~fAa~Lae~-gV~-Vv~vd~d~~~~--~~~~i-------A~rg----lip~~~~~ae~LP  382 (480)
                      .+.+.++.  +|||||||+|.++..++.. +.. +++++++....  +..++       +..|    .+.++.+++..+|
T Consensus       168 ~l~l~~gd--~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVefi~GD~~~lp  245 (438)
T 3uwp_A          168 EIKMTDDD--LFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFLSEE  245 (438)
T ss_dssp             HHCCCTTC--EEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEEEEECCTTSHH
T ss_pred             hcCCCCCC--EEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEECcccCCc
Confidence            44566664  8999999999999988854 654 88888752111  11111       1112    2456677888888


Q ss_pred             CCC--CccchheecccccCccChhcHHHHHHHHHhcccCCcEEEEeeccCC
Q 046488          383 FFD--NTLDLIHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDSFFCA  431 (480)
Q Consensus       383 Fpd--~SFDlV~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~f~~~  431 (480)
                      |.+  ..||+|+++..+ ++.+.   ...|.|++|+|||||+|++...++.
T Consensus       246 ~~d~~~~aDVVf~Nn~~-F~pdl---~~aL~Ei~RvLKPGGrIVssE~f~p  292 (438)
T 3uwp_A          246 WRERIANTSVIFVNNFA-FGPEV---DHQLKERFANMKEGGRIVSSKPFAP  292 (438)
T ss_dssp             HHHHHHTCSEEEECCTT-CCHHH---HHHHHHHHTTSCTTCEEEESSCSSC
T ss_pred             cccccCCccEEEEcccc-cCchH---HHHHHHHHHcCCCCcEEEEeecccC
Confidence            865  589999987654 34333   5689999999999999998855443

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*

Probab=99.09  E-value=3.6e-10  Score=107.03  Aligned_cols=122  Identities=17%  Similarity=0.254  Sum_probs=83.2

Q ss_pred             HHHhcCCCCCCCCeEEEECCCCcHHHHHHhhC---CCEEEEEecCCChhHHH----HHHHhCC---CCeeeecccCCCCC
Q 046488          315 IPEVLDIKPGEIRIGLDFSIGTGTFAARMREF---NVTLVSAIINLGAPFNE----MIALRGL---VPLYITINQRVPFF  384 (480)
Q Consensus       315 I~~vL~l~~g~iR~VLDVGCGtG~fAa~Lae~---gV~Vv~vd~d~~~~~~~----~iA~rgl---ip~~~~~ae~LPFp  384 (480)
                      +-..+.+.++.  +|||+|||+|.++..+++.   +..+++++++.  .+..    .++..+.   +.+..++... +++
T Consensus        85 i~~~~~~~~~~--~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~--~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~  159 (255)
T 3mb5_A           85 IVAYAGISPGD--FIVEAGVGSGALTLFLANIVGPEGRVVSYEIRE--DFAKLAWENIKWAGFDDRVTIKLKDIYE-GIE  159 (255)
T ss_dssp             HHHHTTCCTTC--EEEEECCTTSHHHHHHHHHHCTTSEEEEECSCH--HHHHHHHHHHHHHTCTTTEEEECSCGGG-CCC
T ss_pred             HHHhhCCCCCC--EEEEecCCchHHHHHHHHHhCCCeEEEEEecCH--HHHHHHHHHHHHcCCCCceEEEECchhh-ccC
Confidence            33455565554  8999999999999999987   67888887652  2222    2222232   3334444443 377


Q ss_pred             CCccchheecccccCccChhcHHHHHHHHHhcccCCcEEEEeeccCChhhHHHHHHHHHHcC--ceeeE
Q 046488          385 DNTLDLIHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDSFFCAKEDMNDYLEVFKMLK--YKKHK  451 (480)
Q Consensus       385 d~SFDlV~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~f~~~~edL~~~~~~l~~lG--fkkl~  451 (480)
                      +++||+|++     +..++.   .++.++.|+|||||++++...  ..+....+.+.++..|  |..+.
T Consensus       160 ~~~~D~v~~-----~~~~~~---~~l~~~~~~L~~gG~l~~~~~--~~~~~~~~~~~l~~~g~~f~~~~  218 (255)
T 3mb5_A          160 EENVDHVIL-----DLPQPE---RVVEHAAKALKPGGFFVAYTP--CSNQVMRLHEKLREFKDYFMKPR  218 (255)
T ss_dssp             CCSEEEEEE-----CSSCGG---GGHHHHHHHEEEEEEEEEEES--SHHHHHHHHHHHHHTGGGBSCCE
T ss_pred             CCCcCEEEE-----CCCCHH---HHHHHHHHHcCCCCEEEEEEC--CHHHHHHHHHHHHHcCCCccccE
Confidence            899999997     334442   489999999999999988532  2345566778888888  86553

>1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A*

Probab=99.09  E-value=1.3e-10  Score=114.83  Aligned_cols=96  Identities=17%  Similarity=0.148  Sum_probs=68.6

Q ss_pred             CeEEEECCCCcH----HHHHHhhC------CCEEEEEecCCChhHHHHHHHhCC--------------------------
Q 046488          327 RIGLDFSIGTGT----FAARMREF------NVTLVSAIINLGAPFNEMIALRGL--------------------------  370 (480)
Q Consensus       327 R~VLDVGCGtG~----fAa~Lae~------gV~Vv~vd~d~~~~~~~~iA~rgl--------------------------  370 (480)
                      .+|||+|||||.    +|..|++.      +..++++|++.  .+. ..|+++.                          
T Consensus       107 ~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~--~~L-~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~  183 (274)
T 1af7_A          107 YRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDT--EVL-EKARSGIYRLSELKTLSPQQLQRYFMRGTGPHE  183 (274)
T ss_dssp             EEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCH--HHH-HHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSC
T ss_pred             cEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCH--HHH-HHHHhcCCchhhhhcCCHHHHHHHhhccccCCC
Confidence            479999999998    66667664      36788888762  333 3344432                          


Q ss_pred             ------------CCeeeecccCCCCC-CCccchheecccccCccChhcHHHHHHHHHhcccCCcEEEEe
Q 046488          371 ------------VPLYITINQRVPFF-DNTLDLIHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWID  426 (480)
Q Consensus       371 ------------ip~~~~~ae~LPFp-d~SFDlV~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~  426 (480)
                                  +.+...+....||+ ++.||+|+|..+++++.+.. ...++.+++++|||||+|++.
T Consensus       184 ~~~~v~~~lr~~V~F~~~dl~~~~~~~~~~fDlI~crnvliyf~~~~-~~~vl~~~~~~L~pgG~L~lg  251 (274)
T 1af7_A          184 GLVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTT-QEDILRRFVPLLKPDGLLFAG  251 (274)
T ss_dssp             SEEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHH-HHHHHHHHGGGEEEEEEEEEC
T ss_pred             CceeechhhcccCeEEecccCCCCCCcCCCeeEEEECCchHhCCHHH-HHHHHHHHHHHhCCCcEEEEE
Confidence                        11222334445665 68899999999998886543 368999999999999999884

>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13

Probab=99.09  E-value=3e-10  Score=110.06  Aligned_cols=119  Identities=11%  Similarity=0.016  Sum_probs=81.3

Q ss_pred             hcCCCCCCCCeEEEECCCCcHHHHHHhhC---CCEEEEEecCCChhHHHHH----HHh-CC--CCeeeecccCCCCCCCc
Q 046488          318 VLDIKPGEIRIGLDFSIGTGTFAARMREF---NVTLVSAIINLGAPFNEMI----ALR-GL--VPLYITINQRVPFFDNT  387 (480)
Q Consensus       318 vL~l~~g~iR~VLDVGCGtG~fAa~Lae~---gV~Vv~vd~d~~~~~~~~i----A~r-gl--ip~~~~~ae~LPFpd~S  387 (480)
                      .+.+.++  .+|||+|||+|.++..+++.   +..+++++++.  .+...+    ... +.  +.+..+++.. ++++++
T Consensus       105 ~~~~~~~--~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~--~~~~~a~~~~~~~~g~~~v~~~~~d~~~-~~~~~~  179 (275)
T 1yb2_A          105 RCGLRPG--MDILEVGVGSGNMSSYILYALNGKGTLTVVERDE--DNLKKAMDNLSEFYDIGNVRTSRSDIAD-FISDQM  179 (275)
T ss_dssp             -CCCCTT--CEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCH--HHHHHHHHHHHTTSCCTTEEEECSCTTT-CCCSCC
T ss_pred             HcCCCCc--CEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCH--HHHHHHHHHHHhcCCCCcEEEEECchhc-cCcCCC
Confidence            3445554  48999999999999999886   67888887652  222221    111 21  3334455544 677889


Q ss_pred             cchheecccccCccChhcHHHHHHHHHhcccCCcEEEEeeccCChhhHHHHHHHHHHcCceeeE
Q 046488          388 LDLIHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDSFFCAKEDMNDYLEVFKMLKYKKHK  451 (480)
Q Consensus       388 FDlV~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~f~~~~edL~~~~~~l~~lGfkkl~  451 (480)
                      ||+|++     +++++.   .++.++.|+|||||++++...  ..+..+.+.+.++..||..+.
T Consensus       180 fD~Vi~-----~~~~~~---~~l~~~~~~LkpgG~l~i~~~--~~~~~~~~~~~l~~~Gf~~~~  233 (275)
T 1yb2_A          180 YDAVIA-----DIPDPW---NHVQKIASMMKPGSVATFYLP--NFDQSEKTVLSLSASGMHHLE  233 (275)
T ss_dssp             EEEEEE-----CCSCGG---GSHHHHHHTEEEEEEEEEEES--SHHHHHHHHHHSGGGTEEEEE
T ss_pred             ccEEEE-----cCcCHH---HHHHHHHHHcCCCCEEEEEeC--CHHHHHHHHHHHHHCCCeEEE
Confidence            999997     344443   589999999999999988642  233445666778888998654

>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7

Probab=99.09  E-value=2.2e-10  Score=106.76  Aligned_cols=97  Identities=19%  Similarity=0.157  Sum_probs=69.1

Q ss_pred             HhcCCCCCCCCeEEEECCCCcHHHHHHhhCCCEEEEEecCCChhHHHHHHHhC-----CCCeeeecccCCCCCCCccchh
Q 046488          317 EVLDIKPGEIRIGLDFSIGTGTFAARMREFNVTLVSAIINLGAPFNEMIALRG-----LVPLYITINQRVPFFDNTLDLI  391 (480)
Q Consensus       317 ~vL~l~~g~iR~VLDVGCGtG~fAa~Lae~gV~Vv~vd~d~~~~~~~~iA~rg-----lip~~~~~ae~LPFpd~SFDlV  391 (480)
                      +.+.+.++.  +|||+|||+|.++..+++.+..+++++++.  .+. ..+.+.     .+.+..++.......+++||+|
T Consensus        64 ~~~~~~~~~--~vLdiG~G~G~~~~~l~~~~~~v~~vD~~~--~~~-~~a~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v  138 (231)
T 1vbf_A           64 DELDLHKGQ--KVLEIGTGIGYYTALIAEIVDKVVSVEINE--KMY-NYASKLLSYYNNIKLILGDGTLGYEEEKPYDRV  138 (231)
T ss_dssp             HHTTCCTTC--EEEEECCTTSHHHHHHHHHSSEEEEEESCH--HHH-HHHHHHHTTCSSEEEEESCGGGCCGGGCCEEEE
T ss_pred             HhcCCCCCC--EEEEEcCCCCHHHHHHHHHcCEEEEEeCCH--HHH-HHHHHHHhhcCCeEEEECCcccccccCCCccEE
Confidence            445555553  899999999999999999888888888752  232 222221     3344455544423357899999


Q ss_pred             eecccccCccChhcHHHHHHHHHhcccCCcEEEEee
Q 046488          392 HTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDS  427 (480)
Q Consensus       392 ~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~  427 (480)
                      ++..+++|+.         .++.|+|||||++++..
T Consensus       139 ~~~~~~~~~~---------~~~~~~L~pgG~l~~~~  165 (231)
T 1vbf_A          139 VVWATAPTLL---------CKPYEQLKEGGIMILPI  165 (231)
T ss_dssp             EESSBBSSCC---------HHHHHTEEEEEEEEEEE
T ss_pred             EECCcHHHHH---------HHHHHHcCCCcEEEEEE
Confidence            9999887654         36889999999998863

>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6

Probab=99.08  E-value=1.7e-10  Score=115.48  Aligned_cols=99  Identities=20%  Similarity=0.277  Sum_probs=71.3

Q ss_pred             CeEEEECCCCcHHHHHHhhCCC-EEEEEecCCChhHHH-HHHHhCC---CCeeeecccCCCCCCCccchheecccccCcc
Q 046488          327 RIGLDFSIGTGTFAARMREFNV-TLVSAIINLGAPFNE-MIALRGL---VPLYITINQRVPFFDNTLDLIHTTRFLDGWI  401 (480)
Q Consensus       327 R~VLDVGCGtG~fAa~Lae~gV-~Vv~vd~d~~~~~~~-~iA~rgl---ip~~~~~ae~LPFpd~SFDlV~ss~vL~h~~  401 (480)
                      .+|||+|||+|.++..+++.|. .+++++++....... .++..+.   +.+..++++.+++++++||+|++.....++.
T Consensus        40 ~~VLDiGcGtG~ls~~la~~g~~~v~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Ivs~~~~~~l~  119 (328)
T 1g6q_1           40 KIVLDVGCGTGILSMFAAKHGAKHVIGVDMSSIIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWMGYFLL  119 (328)
T ss_dssp             CEEEEETCTTSHHHHHHHHTCCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEEEEEECCCBTTBS
T ss_pred             CEEEEecCccHHHHHHHHHCCCCEEEEEChHHHHHHHHHHHHHcCCCCCEEEEECchhhccCCCCcccEEEEeCchhhcc
Confidence            4899999999999999998875 788888762111111 2222332   3455677888899889999999875444433


Q ss_pred             ChhcHHHHHHHHHhcccCCcEEEE
Q 046488          402 DFVLLDFILYDWDRVLRPGGLLWI  425 (480)
Q Consensus       402 d~~~l~~~L~EI~RVLKPGG~fiI  425 (480)
                      ....+..++.++.|+|||||+++.
T Consensus       120 ~~~~~~~~l~~~~~~LkpgG~li~  143 (328)
T 1g6q_1          120 YESMMDTVLYARDHYLVEGGLIFP  143 (328)
T ss_dssp             TTCCHHHHHHHHHHHEEEEEEEES
T ss_pred             cHHHHHHHHHHHHhhcCCCeEEEE
Confidence            333346799999999999999874

>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}

Probab=99.08  E-value=2e-10  Score=104.45  Aligned_cols=100  Identities=16%  Similarity=0.075  Sum_probs=68.8

Q ss_pred             CeEEEECCCCcHHHHHHhhCCC-EEEEEecCCCh--hHHHHHHHhCC--CCeeeecccCCC--CCCCccchheecccccC
Q 046488          327 RIGLDFSIGTGTFAARMREFNV-TLVSAIINLGA--PFNEMIALRGL--VPLYITINQRVP--FFDNTLDLIHTTRFLDG  399 (480)
Q Consensus       327 R~VLDVGCGtG~fAa~Lae~gV-~Vv~vd~d~~~--~~~~~iA~rgl--ip~~~~~ae~LP--Fpd~SFDlV~ss~vL~h  399 (480)
                      .+|||+|||+|.++..+++++. .+++++++...  .+...+...+.  +.+..+++..++  +++++||+|++...+++
T Consensus        46 ~~vLDlgcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~i~~~~p~~~  125 (189)
T 3p9n_A           46 LAVLDLYAGSGALGLEALSRGAASVLFVESDQRSAAVIARNIEALGLSGATLRRGAVAAVVAAGTTSPVDLVLADPPYNV  125 (189)
T ss_dssp             CEEEEETCTTCHHHHHHHHTTCSEEEEEECCHHHHHHHHHHHHHHTCSCEEEEESCHHHHHHHCCSSCCSEEEECCCTTS
T ss_pred             CEEEEeCCCcCHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEEccHHHHHhhccCCCccEEEECCCCCc
Confidence            4899999999999998887764 68888865311  11122223332  344555554443  45899999999877654


Q ss_pred             ccChhcHHHHHHHHHh--cccCCcEEEEeec
Q 046488          400 WIDFVLLDFILYDWDR--VLRPGGLLWIDSF  428 (480)
Q Consensus       400 ~~d~~~l~~~L~EI~R--VLKPGG~fiI~~f  428 (480)
                      ..+  .+..++.++.|  +|||||++++...
T Consensus       126 ~~~--~~~~~l~~~~~~~~L~pgG~l~~~~~  154 (189)
T 3p9n_A          126 DSA--DVDAILAALGTNGWTREGTVAVVERA  154 (189)
T ss_dssp             CHH--HHHHHHHHHHHSSSCCTTCEEEEEEE
T ss_pred             chh--hHHHHHHHHHhcCccCCCeEEEEEec
Confidence            322  23679999999  9999999999653

>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*

Probab=99.08  E-value=3e-10  Score=108.03  Aligned_cols=124  Identities=14%  Similarity=0.174  Sum_probs=73.0

Q ss_pred             CeEEEECCCCcHHHHHHhh--CCCEEEEEecCCChhHHHHH--HH-----hCC--CCeeeecccCCCCCCCccchheecc
Q 046488          327 RIGLDFSIGTGTFAARMRE--FNVTLVSAIINLGAPFNEMI--AL-----RGL--VPLYITINQRVPFFDNTLDLIHTTR  395 (480)
Q Consensus       327 R~VLDVGCGtG~fAa~Lae--~gV~Vv~vd~d~~~~~~~~i--A~-----rgl--ip~~~~~ae~LPFpd~SFDlV~ss~  395 (480)
                      .+|||||||+|.++..|++  .+..++++|++. ..+.+..  |.     .+.  +.+..++++.+|.  ..||.|.+..
T Consensus        26 ~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~-~~ml~~A~~A~~~~~~~~~~~v~~~~~d~~~l~~--~~~d~v~~i~  102 (225)
T 3p2e_A           26 RVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVK-ENLFDISKKIIKKPSKGGLSNVVFVIAAAESLPF--ELKNIADSIS  102 (225)
T ss_dssp             EEEEEETCTTSHHHHHHHHTCTTEEEEEECSCC-GGGHHHHHHHTSCGGGTCCSSEEEECCBTTBCCG--GGTTCEEEEE
T ss_pred             CEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCH-HHHHHHHHHHHHHHHHcCCCCeEEEEcCHHHhhh--hccCeEEEEE
Confidence            4899999999999999984  467788888762 1222211  12     222  2234456777753  3335444443


Q ss_pred             cccCccCh-----hcHHHHHHHHHhcccCCcEEEEee-ccCC---------------hhhH--HHHHHHHHHcCceeeEE
Q 046488          396 FLDGWIDF-----VLLDFILYDWDRVLRPGGLLWIDS-FFCA---------------KEDM--NDYLEVFKMLKYKKHKW  452 (480)
Q Consensus       396 vL~h~~d~-----~~l~~~L~EI~RVLKPGG~fiI~~-f~~~---------------~edL--~~~~~~l~~lGfkkl~W  452 (480)
                      +..+|...     .....++.|+.|+|||||+|++.. ....               .+..  .++.+.++..||.....
T Consensus       103 ~~~~~~~~~~~~~~~~~~~l~~~~r~LkpGG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~~l~~aGf~v~~~  182 (225)
T 3p2e_A          103 ILFPWGTLLEYVIKPNRDILSNVADLAKKEAHFEFVTTYSDSYEEAEIKKRGLPLLSKAYFLSEQYKAELSNSGFRIDDV  182 (225)
T ss_dssp             EESCCHHHHHHHHTTCHHHHHHHHTTEEEEEEEEEEECCCC--------------CCHHHHHSHHHHHHHHHHTCEEEEE
T ss_pred             EeCCCcHHhhhhhcchHHHHHHHHHhcCCCcEEEEEEeccccchhchhhhcCCCCCChhhcchHHHHHHHHHcCCCeeee
Confidence            33333211     001358999999999999998821 1000               0001  13677888899986554


Q ss_pred             E
Q 046488          453 V  453 (480)
Q Consensus       453 ~  453 (480)
                      .
T Consensus       183 ~  183 (225)
T 3p2e_A          183 K  183 (225)
T ss_dssp             E
T ss_pred             e
Confidence            3

>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*

Probab=99.08  E-value=1.3e-11  Score=116.09  Aligned_cols=118  Identities=10%  Similarity=0.021  Sum_probs=80.6

Q ss_pred             CeEEEECCCCcHHHHHHhhCCCEEEEEecCCChhHHH----HHHHhCC---CCeeeecccCCCCCCCccchheecccccC
Q 046488          327 RIGLDFSIGTGTFAARMREFNVTLVSAIINLGAPFNE----MIALRGL---VPLYITINQRVPFFDNTLDLIHTTRFLDG  399 (480)
Q Consensus       327 R~VLDVGCGtG~fAa~Lae~gV~Vv~vd~d~~~~~~~----~iA~rgl---ip~~~~~ae~LPFpd~SFDlV~ss~vL~h  399 (480)
                      .+|||+|||+|.++..+++.+..+++++++.  .+..    .+...+.   +.+..+++..++ ++++||+|++...+++
T Consensus        80 ~~vLD~gcG~G~~~~~la~~~~~v~~vD~s~--~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~D~v~~~~~~~~  156 (241)
T 3gdh_A           80 DVVVDAFCGVGGNTIQFALTGMRVIAIDIDP--VKIALARNNAEVYGIADKIEFICGDFLLLA-SFLKADVVFLSPPWGG  156 (241)
T ss_dssp             SEEEETTCTTSHHHHHHHHTTCEEEEEESCH--HHHHHHHHHHHHTTCGGGEEEEESCHHHHG-GGCCCSEEEECCCCSS
T ss_pred             CEEEECccccCHHHHHHHHcCCEEEEEECCH--HHHHHHHHHHHHcCCCcCeEEEECChHHhc-ccCCCCEEEECCCcCC
Confidence            4899999999999999999998899888763  2222    2222232   345556666666 6789999999988877


Q ss_pred             ccChhcHHHHHHHHHhcccCCcEEEEee----------ccCChhhHHHHHHHHHHcCceee
Q 046488          400 WIDFVLLDFILYDWDRVLRPGGLLWIDS----------FFCAKEDMNDYLEVFKMLKYKKH  450 (480)
Q Consensus       400 ~~d~~~l~~~L~EI~RVLKPGG~fiI~~----------f~~~~edL~~~~~~l~~lGfkkl  450 (480)
                      .....   ..+.++.|+|||||++++..          +.....+++.+..++..-|.-.+
T Consensus       157 ~~~~~---~~~~~~~~~L~pgG~~i~~~~~~~~~~~~~~lp~~~~~~~~~~~l~~~g~~~i  214 (241)
T 3gdh_A          157 PDYAT---AETFDIRTMMSPDGFEIFRLSKKITNNIVYFLPRNADIDQVASLAGPGGQVEI  214 (241)
T ss_dssp             GGGGG---SSSBCTTTSCSSCHHHHHHHHHHHCSCEEEEEETTBCHHHHHHTTCTTCCEEE
T ss_pred             cchhh---hHHHHHHhhcCCcceeHHHHHHhhCCceEEECCCCCCHHHHHHHhccCCCEEE
Confidence            65543   36789999999999977652          22222234555555555554433

>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}

Probab=99.06  E-value=5.3e-10  Score=109.46  Aligned_cols=102  Identities=14%  Similarity=0.053  Sum_probs=71.3

Q ss_pred             CCeEEEECCCC---cHHHHHHhhC--CCEEEEEecCCChhHHHHHHHh----CCCCeeeecccCC-----------CCCC
Q 046488          326 IRIGLDFSIGT---GTFAARMREF--NVTLVSAIINLGAPFNEMIALR----GLVPLYITINQRV-----------PFFD  385 (480)
Q Consensus       326 iR~VLDVGCGt---G~fAa~Lae~--gV~Vv~vd~d~~~~~~~~iA~r----glip~~~~~ae~L-----------PFpd  385 (480)
                      .++|||||||+   |.++..+.+.  +..++++|++  ..+......+    +.+.++.++....           .++.
T Consensus        78 ~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~s--p~~l~~Ar~~~~~~~~v~~~~~D~~~~~~~~~~~~~~~~~d~  155 (274)
T 2qe6_A           78 ISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDID--PMVLTHGRALLAKDPNTAVFTADVRDPEYILNHPDVRRMIDF  155 (274)
T ss_dssp             CCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESS--HHHHHHHHHHHTTCTTEEEEECCTTCHHHHHHSHHHHHHCCT
T ss_pred             CCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECC--hHHHHHHHHhcCCCCCeEEEEeeCCCchhhhccchhhccCCC
Confidence            46899999999   9988776653  5788888865  2333322111    2234444544321           1233


Q ss_pred             CccchheecccccCccChhcHHHHHHHHHhcccCCcEEEEeeccC
Q 046488          386 NTLDLIHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDSFFC  430 (480)
Q Consensus       386 ~SFDlV~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~f~~  430 (480)
                      ++||+|++..+++|+.+. ....+|.++.|+|||||+|++.++..
T Consensus       156 ~~~d~v~~~~vlh~~~d~-~~~~~l~~~~~~L~pGG~l~i~~~~~  199 (274)
T 2qe6_A          156 SRPAAIMLVGMLHYLSPD-VVDRVVGAYRDALAPGSYLFMTSLVD  199 (274)
T ss_dssp             TSCCEEEETTTGGGSCTT-THHHHHHHHHHHSCTTCEEEEEEEBC
T ss_pred             CCCEEEEEechhhhCCcH-HHHHHHHHHHHhCCCCcEEEEEEecC
Confidence            589999999999998764 23679999999999999999987654

>2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus}

Probab=99.06  E-value=1.4e-10  Score=113.80  Aligned_cols=99  Identities=8%  Similarity=-0.069  Sum_probs=65.2

Q ss_pred             CCCCCCCeEEEECCCCcHHHHHHhhCCCEEEEEecCCChhHHHHHHHhC---------CCCee--eecccCCCCCCCccc
Q 046488          321 IKPGEIRIGLDFSIGTGTFAARMREFNVTLVSAIINLGAPFNEMIALRG---------LVPLY--ITINQRVPFFDNTLD  389 (480)
Q Consensus       321 l~~g~iR~VLDVGCGtG~fAa~Lae~gV~Vv~vd~d~~~~~~~~iA~rg---------lip~~--~~~ae~LPFpd~SFD  389 (480)
                      +.++  .+|||+|||+|.++..++++ ..|+++|++..   ... +.+.         .+.+.  .+++..+|  +++||
T Consensus        72 ~~~g--~~VLDlGcGtG~~s~~la~~-~~V~gvD~s~m---~~~-a~~~~~~~~~~~~~v~~~~~~~D~~~l~--~~~fD  142 (265)
T 2oxt_A           72 VELT--GRVVDLGCGRGGWSYYAASR-PHVMDVRAYTL---GVG-GHEVPRITESYGWNIVKFKSRVDIHTLP--VERTD  142 (265)
T ss_dssp             CCCC--EEEEEESCTTSHHHHHHHTS-TTEEEEEEECC---CCS-SCCCCCCCCBTTGGGEEEECSCCTTTSC--CCCCS
T ss_pred             CCCC--CEEEEeCcCCCHHHHHHHHc-CcEEEEECchh---hhh-hhhhhhhhhccCCCeEEEecccCHhHCC--CCCCc
Confidence            4444  48999999999999999988 56777776531   000 1001         12334  44555555  88999


Q ss_pred             hheecccccCccCh----hcHHHHHHHHHhcccCCc--EEEEeecc
Q 046488          390 LIHTTRFLDGWIDF----VLLDFILYDWDRVLRPGG--LLWIDSFF  429 (480)
Q Consensus       390 lV~ss~vL~h~~d~----~~l~~~L~EI~RVLKPGG--~fiI~~f~  429 (480)
                      +|+|..+ .+....    .....+|.++.|+|||||  .|++..|.
T Consensus       143 ~V~sd~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~fv~kv~~  187 (265)
T 2oxt_A          143 VIMCDVG-ESSPKWSVESERTIKILELLEKWKVKNPSADFVVKVLC  187 (265)
T ss_dssp             EEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEESC
T ss_pred             EEEEeCc-ccCCccchhHHHHHHHHHHHHHHhccCCCeEEEEEeCC
Confidence            9999766 322221    100137899999999999  99987665

>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*

Probab=99.05  E-value=2.5e-10  Score=114.66  Aligned_cols=120  Identities=13%  Similarity=0.026  Sum_probs=83.7

Q ss_pred             CeEEEECCCCcHHHHHHhhC--CCEEEEEecCCChhHHHHHHHh-CCCCeeeecccCCCCCCCccchheecccccCccCh
Q 046488          327 RIGLDFSIGTGTFAARMREF--NVTLVSAIINLGAPFNEMIALR-GLVPLYITINQRVPFFDNTLDLIHTTRFLDGWIDF  403 (480)
Q Consensus       327 R~VLDVGCGtG~fAa~Lae~--gV~Vv~vd~d~~~~~~~~iA~r-glip~~~~~ae~LPFpd~SFDlV~ss~vL~h~~d~  403 (480)
                      .+|||||||+|.++..++++  +..++++++.   .+.. .+.+ ..+.+..++... |++  .||+|++..++++|.+.
T Consensus       195 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~---~~~~-~a~~~~~v~~~~~d~~~-~~~--~~D~v~~~~vlh~~~d~  267 (358)
T 1zg3_A          195 ESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQP---QVVG-NLTGNENLNFVGGDMFK-SIP--SADAVLLKWVLHDWNDE  267 (358)
T ss_dssp             SEEEEETCTTSHHHHHHHHHCTTSEEEEEECH---HHHS-SCCCCSSEEEEECCTTT-CCC--CCSEEEEESCGGGSCHH
T ss_pred             CEEEEECCCcCHHHHHHHHHCCCCeEEEeccH---HHHh-hcccCCCcEEEeCccCC-CCC--CceEEEEcccccCCCHH
Confidence            58999999999999999886  5677776641   2221 1111 123444455444 665  49999999999999875


Q ss_pred             hcHHHHHHHHHhcccC---CcEEEEeeccCCh--------h------------------hHHHHHHHHHHcCceeeEEEE
Q 046488          404 VLLDFILYDWDRVLRP---GGLLWIDSFFCAK--------E------------------DMNDYLEVFKMLKYKKHKWVV  454 (480)
Q Consensus       404 ~~l~~~L~EI~RVLKP---GG~fiI~~f~~~~--------e------------------dL~~~~~~l~~lGfkkl~W~~  454 (480)
                      .. ..+|+++.|+|||   ||+++|.++....        .                  ..++|.++++..||+.+....
T Consensus       268 ~~-~~~l~~~~~~L~p~~~gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~  346 (358)
T 1zg3_A          268 QS-LKILKNSKEAISHKGKDGKVIIIDISIDETSDDRGLTELQLDYDLVMLTMFLGKERTKQEWEKLIYDAGFSSYKITP  346 (358)
T ss_dssp             HH-HHHHHHHHHHTGGGGGGCEEEEEECEECTTCSCHHHHHHHHHHHHHHHHHHSCCCEEHHHHHHHHHHTTCCEEEEEE
T ss_pred             HH-HHHHHHHHHhCCCCCCCcEEEEEEeccCCCCccchhhhHHHhhCHHHhccCCCCCCCHHHHHHHHHHcCCCeeEEEe
Confidence            42 4799999999999   9999987543211        0                  124577899999998776433

>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...

Probab=99.05  E-value=9.7e-10  Score=102.63  Aligned_cols=155  Identities=19%  Similarity=0.304  Sum_probs=89.6

Q ss_pred             hHHHhcCCCCCCCCeEEEECCCCcHHHHHHhhC---CCEEEEEecCCCh--hHHHHHHHhCC---CCeeeecc-cCCCCC
Q 046488          314 LIPEVLDIKPGEIRIGLDFSIGTGTFAARMREF---NVTLVSAIINLGA--PFNEMIALRGL---VPLYITIN-QRVPFF  384 (480)
Q Consensus       314 ~I~~vL~l~~g~iR~VLDVGCGtG~fAa~Lae~---gV~Vv~vd~d~~~--~~~~~iA~rgl---ip~~~~~a-e~LPFp  384 (480)
                      ++..++...++  .+|||+|||+|.++..+++.   +..+++++++...  .+...+...+.   +.+..+++ +.++..
T Consensus        49 ~l~~l~~~~~~--~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~  126 (221)
T 3u81_A           49 IMDAVIREYSP--SLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLIPQL  126 (221)
T ss_dssp             HHHHHHHHHCC--SEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGT
T ss_pred             HHHHHHHhcCC--CEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHHHHHHH
Confidence            44445444333  48999999999999999984   6788888875211  11122223343   34445553 334443


Q ss_pred             C-----CccchheecccccCccChhcHHHHHHHHHhcccCCcEEEEeeccCChhhHHHHHHHHHHc-CceeeEEEEeecc
Q 046488          385 D-----NTLDLIHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDSFFCAKEDMNDYLEVFKML-KYKKHKWVVVPKR  458 (480)
Q Consensus       385 d-----~SFDlV~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~f~~~~edL~~~~~~l~~l-Gfkkl~W~~~~k~  458 (480)
                      +     ++||+|++....+++.+.   ..++.++ |+|||||++++++.....  ...+.+.++.. +|...........
T Consensus       127 ~~~~~~~~fD~V~~d~~~~~~~~~---~~~~~~~-~~LkpgG~lv~~~~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~  200 (221)
T 3u81_A          127 KKKYDVDTLDMVFLDHWKDRYLPD---TLLLEKC-GLLRKGTVLLADNVIVPG--TPDFLAYVRGSSSFECTHYSSYLEY  200 (221)
T ss_dssp             TTTSCCCCCSEEEECSCGGGHHHH---HHHHHHT-TCCCTTCEEEESCCCCCC--CHHHHHHHHHCTTEEEEEEEEEETT
T ss_pred             HHhcCCCceEEEEEcCCcccchHH---HHHHHhc-cccCCCeEEEEeCCCCcc--hHHHHHHHhhCCCceEEEccccccc
Confidence            3     799999988766655433   2467777 999999999998654332  23344444432 3433322211111


Q ss_pred             CCCCcceeEEEEEEeCCCC
Q 046488          459 DKDDREVFFSAVLEKPPRP  477 (480)
Q Consensus       459 d~~~~E~~lsav~qKP~~~  477 (480)
                       ....+.+..++++.|-.+
T Consensus       201 -~~~~dG~~~~~~~g~~~~  218 (221)
T 3u81_A          201 -MKVVDGLEKAIYQGPSSP  218 (221)
T ss_dssp             -TTEEEEEEEEEECCCCCC
T ss_pred             -CCCCCceEEEEEeCCCCC
Confidence             123445667778776543

>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20

Probab=99.04  E-value=1.1e-09  Score=100.14  Aligned_cols=110  Identities=7%  Similarity=0.000  Sum_probs=72.4

Q ss_pred             CeEEEECCCCcHHHHHHhhC--CCEEEEEecCCChhHHH----HHHHhCC--CCeeeecccCCCCCCCccchheeccccc
Q 046488          327 RIGLDFSIGTGTFAARMREF--NVTLVSAIINLGAPFNE----MIALRGL--VPLYITINQRVPFFDNTLDLIHTTRFLD  398 (480)
Q Consensus       327 R~VLDVGCGtG~fAa~Lae~--gV~Vv~vd~d~~~~~~~----~iA~rgl--ip~~~~~ae~LPFpd~SFDlV~ss~vL~  398 (480)
                      .+|||+|||+|.++..++..  +..+++++++.  .+..    .+...+.  +.+..++...++ ++++||+|++.. + 
T Consensus        67 ~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~--~~~~~a~~~~~~~~~~~v~~~~~d~~~~~-~~~~~D~i~~~~-~-  141 (207)
T 1jsx_A           67 ERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLG--KRVRFLRQVQHELKLENIEPVQSRVEEFP-SEPPFDGVISRA-F-  141 (207)
T ss_dssp             SEEEEETCTTTTTHHHHHHHCTTSEEEEEESCH--HHHHHHHHHHHHTTCSSEEEEECCTTTSC-CCSCEEEEECSC-S-
T ss_pred             CeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCH--HHHHHHHHHHHHcCCCCeEEEecchhhCC-ccCCcCEEEEec-c-
Confidence            48999999999999999875  67888888652  2222    2222232  334445555555 568999999753 2 


Q ss_pred             CccChhcHHHHHHHHHhcccCCcEEEEeeccCChhhHHHHHHHHHHcCceeeE
Q 046488          399 GWIDFVLLDFILYDWDRVLRPGGLLWIDSFFCAKEDMNDYLEVFKMLKYKKHK  451 (480)
Q Consensus       399 h~~d~~~l~~~L~EI~RVLKPGG~fiI~~f~~~~edL~~~~~~l~~lGfkkl~  451 (480)
                        .+.   ..++.++.++|||||++++.......+++.   ++++  ||+.+.
T Consensus       142 --~~~---~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~---~~~~--g~~~~~  184 (207)
T 1jsx_A          142 --ASL---NDMVSWCHHLPGEQGRFYALKGQMPEDEIA---LLPE--EYQVES  184 (207)
T ss_dssp             --SSH---HHHHHHHTTSEEEEEEEEEEESSCCHHHHH---TSCT--TEEEEE
T ss_pred             --CCH---HHHHHHHHHhcCCCcEEEEEeCCCchHHHH---HHhc--CCceee
Confidence              222   469999999999999998864333333333   2332  777554

>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13

Probab=99.04  E-value=7.6e-10  Score=106.19  Aligned_cols=120  Identities=17%  Similarity=0.150  Sum_probs=81.3

Q ss_pred             HhcCCCCCCCCeEEEECCCCcHHHHHHhhC---CCEEEEEecCCChhHHH----HHHHh-C----CCCeeeecccCCCCC
Q 046488          317 EVLDIKPGEIRIGLDFSIGTGTFAARMREF---NVTLVSAIINLGAPFNE----MIALR-G----LVPLYITINQRVPFF  384 (480)
Q Consensus       317 ~vL~l~~g~iR~VLDVGCGtG~fAa~Lae~---gV~Vv~vd~d~~~~~~~----~iA~r-g----lip~~~~~ae~LPFp  384 (480)
                      ..+.+.++.  +|||+|||+|.++..+++.   +..+++++.+.  .+..    .++.. +    .+.+..+++..++++
T Consensus        93 ~~~~~~~~~--~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~--~~~~~a~~~~~~~~g~~~~~v~~~~~d~~~~~~~  168 (280)
T 1i9g_A           93 HEGDIFPGA--RVLEAGAGSGALTLSLLRAVGPAGQVISYEQRA--DHAEHARRNVSGCYGQPPDNWRLVVSDLADSELP  168 (280)
T ss_dssp             HHTTCCTTC--EEEEECCTTSHHHHHHHHHHCTTSEEEEECSCH--HHHHHHHHHHHHHHTSCCTTEEEECSCGGGCCCC
T ss_pred             HHcCCCCCC--EEEEEcccccHHHHHHHHHhCCCCEEEEEeCCH--HHHHHHHHHHHHhcCCCCCcEEEEECchHhcCCC
Confidence            445566554  8999999999999999885   56888887652  2222    22222 3    234455667777888


Q ss_pred             CCccchheecccccCccChhcHHHHHHHHHhcccCCcEEEEeeccCChhhHHHHHHHHHH-cCceee
Q 046488          385 DNTLDLIHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDSFFCAKEDMNDYLEVFKM-LKYKKH  450 (480)
Q Consensus       385 d~SFDlV~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~f~~~~edL~~~~~~l~~-lGfkkl  450 (480)
                      +++||+|++.     ..++.   .++.++.|+|||||++++...  ..+.+..+.+.++. .+|...
T Consensus       169 ~~~~D~v~~~-----~~~~~---~~l~~~~~~L~pgG~l~~~~~--~~~~~~~~~~~l~~~~~f~~~  225 (280)
T 1i9g_A          169 DGSVDRAVLD-----MLAPW---EVLDAVSRLLVAGGVLMVYVA--TVTQLSRIVEALRAKQCWTEP  225 (280)
T ss_dssp             TTCEEEEEEE-----SSCGG---GGHHHHHHHEEEEEEEEEEES--SHHHHHHHHHHHHHHSSBCCC
T ss_pred             CCceeEEEEC-----CcCHH---HHHHHHHHhCCCCCEEEEEeC--CHHHHHHHHHHHHhcCCcCCc
Confidence            9999999972     23332   489999999999999988543  23444555555555 677643

>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A*

Probab=99.04  E-value=2.2e-10  Score=113.14  Aligned_cols=95  Identities=7%  Similarity=-0.090  Sum_probs=63.8

Q ss_pred             CeEEEECCCCcHHHHHHhhCCCEEEEEecCCChhHHHHHHHhC---------CCCee--eecccCCCCCCCccchheecc
Q 046488          327 RIGLDFSIGTGTFAARMREFNVTLVSAIINLGAPFNEMIALRG---------LVPLY--ITINQRVPFFDNTLDLIHTTR  395 (480)
Q Consensus       327 R~VLDVGCGtG~fAa~Lae~gV~Vv~vd~d~~~~~~~~iA~rg---------lip~~--~~~ae~LPFpd~SFDlV~ss~  395 (480)
                      .+|||+|||+|.++..++++ ..|+++|++..   ..+ +.+.         .+.+.  .++++.+|  +++||+|+|..
T Consensus        84 ~~VLDlGcGtG~~s~~la~~-~~V~gVD~s~m---~~~-a~~~~~~~~~~~~~v~~~~~~~D~~~l~--~~~fD~Vvsd~  156 (276)
T 2wa2_A           84 GTVVDLGCGRGSWSYYAASQ-PNVREVKAYTL---GTS-GHEKPRLVETFGWNLITFKSKVDVTKME--PFQADTVLCDI  156 (276)
T ss_dssp             EEEEEESCTTCHHHHHHHTS-TTEEEEEEECC---CCT-TSCCCCCCCCTTGGGEEEECSCCGGGCC--CCCCSEEEECC
T ss_pred             CEEEEeccCCCHHHHHHHHc-CCEEEEECchh---hhh-hhhchhhhhhcCCCeEEEeccCcHhhCC--CCCcCEEEECC
Confidence            48999999999999999988 56777776531   110 1111         12334  44566665  88999999976


Q ss_pred             cccCccC----hhcHHHHHHHHHhcccCCc--EEEEeecc
Q 046488          396 FLDGWID----FVLLDFILYDWDRVLRPGG--LLWIDSFF  429 (480)
Q Consensus       396 vL~h~~d----~~~l~~~L~EI~RVLKPGG--~fiI~~f~  429 (480)
                      + .....    ......+|.++.|+|||||  .|++..|.
T Consensus       157 ~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~~v~~~~~  195 (276)
T 2wa2_A          157 G-ESNPTAAVEASRTLTVLNVISRWLEYNQGCGFCVKVLN  195 (276)
T ss_dssp             C-CCCSCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEESC
T ss_pred             C-cCCCchhhhHHHHHHHHHHHHHHhccCCCcEEEEEeCC
Confidence            6 22211    1100137899999999999  99987665

>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A

Probab=99.03  E-value=4.5e-10  Score=113.26  Aligned_cols=98  Identities=14%  Similarity=0.150  Sum_probs=71.1

Q ss_pred             CeEEEECCCCcHHHHHHhhCCC-EEEEEecCCChhHHH-HHHHhCC---CCeeeecccCCCCCCCccchheecccccCcc
Q 046488          327 RIGLDFSIGTGTFAARMREFNV-TLVSAIINLGAPFNE-MIALRGL---VPLYITINQRVPFFDNTLDLIHTTRFLDGWI  401 (480)
Q Consensus       327 R~VLDVGCGtG~fAa~Lae~gV-~Vv~vd~d~~~~~~~-~iA~rgl---ip~~~~~ae~LPFpd~SFDlV~ss~vL~h~~  401 (480)
                      .+|||||||+|.++..+++.+. .+++++++....... .++..+.   +.+..++.+.++++ ++||+|++...++|+.
T Consensus        52 ~~VLDiGcGtG~ls~~la~~g~~~V~~vD~s~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~-~~~D~Ivs~~~~~~~~  130 (348)
T 2y1w_A           52 KIVLDVGCGSGILSFFAAQAGARKIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVEEVSLP-EQVDIIISEPMGYMLF  130 (348)
T ss_dssp             CEEEEETCTTSHHHHHHHHTTCSEEEEEECSTHHHHHHHHHHHTTCTTTEEEEESCTTTCCCS-SCEEEEEECCCBTTBT
T ss_pred             CEEEEcCCCccHHHHHHHhCCCCEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcchhhCCCC-CceeEEEEeCchhcCC
Confidence            4899999999999999998865 888888763111111 2222232   34556667777765 6899999988888776


Q ss_pred             ChhcHHHHHHHHHhcccCCcEEEEe
Q 046488          402 DFVLLDFILYDWDRVLRPGGLLWID  426 (480)
Q Consensus       402 d~~~l~~~L~EI~RVLKPGG~fiI~  426 (480)
                      ... +...+.++.|+|||||++++.
T Consensus       131 ~~~-~~~~l~~~~~~LkpgG~li~~  154 (348)
T 2y1w_A          131 NER-MLESYLHAKKYLKPSGNMFPT  154 (348)
T ss_dssp             TTS-HHHHHHHGGGGEEEEEEEESC
T ss_pred             hHH-HHHHHHHHHhhcCCCeEEEEe
Confidence            443 245788999999999999864

>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*

Probab=99.02  E-value=2e-09  Score=104.20  Aligned_cols=124  Identities=13%  Similarity=0.090  Sum_probs=75.8

Q ss_pred             CCCCCCCeEEEECCCCcHHHHHHhhC---CCEEEEEecCCChhHH---HHHHHh-CCCCeeeecccCCC---CCCCccch
Q 046488          321 IKPGEIRIGLDFSIGTGTFAARMREF---NVTLVSAIINLGAPFN---EMIALR-GLVPLYITINQRVP---FFDNTLDL  390 (480)
Q Consensus       321 l~~g~iR~VLDVGCGtG~fAa~Lae~---gV~Vv~vd~d~~~~~~---~~iA~r-glip~~~~~ae~LP---Fpd~SFDl  390 (480)
                      +++|.  +|||+|||+|.++..+++.   .-.|++++.+.  .+.   ...+.+ ..+....+++....   ...++||+
T Consensus        74 l~~g~--~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~--~~l~~l~~~a~~r~nv~~i~~Da~~~~~~~~~~~~~D~  149 (232)
T 3id6_C           74 IRKGT--KVLYLGAASGTTISHVSDIIELNGKAYGVEFSP--RVVRELLLVAQRRPNIFPLLADARFPQSYKSVVENVDV  149 (232)
T ss_dssp             CCTTC--EEEEETCTTSHHHHHHHHHHTTTSEEEEEECCH--HHHHHHHHHHHHCTTEEEEECCTTCGGGTTTTCCCEEE
T ss_pred             CCCCC--EEEEEeecCCHHHHHHHHHhCCCCEEEEEECcH--HHHHHHHHHhhhcCCeEEEEcccccchhhhccccceEE
Confidence            55664  8999999999999999875   33777777652  232   223333 33444555544322   22578999


Q ss_pred             heecccccCccChhcHHHHHHHHHhcccCCcEEEEeec-cC-----Ch-hhHHHHHHHHHHcCceeeEEE
Q 046488          391 IHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDSF-FC-----AK-EDMNDYLEVFKMLKYKKHKWV  453 (480)
Q Consensus       391 V~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~f-~~-----~~-edL~~~~~~l~~lGfkkl~W~  453 (480)
                      |++....   ++..  ..++..+.|+|||||+|++.-. .|     .. +..+.....++..||+.+.-.
T Consensus       150 I~~d~a~---~~~~--~il~~~~~~~LkpGG~lvisik~~~~d~t~~~~e~~~~~~~~L~~~gf~~~~~~  214 (232)
T 3id6_C          150 LYVDIAQ---PDQT--DIAIYNAKFFLKVNGDMLLVIKARSIDVTKDPKEIYKTEVEKLENSNFETIQII  214 (232)
T ss_dssp             EEECCCC---TTHH--HHHHHHHHHHEEEEEEEEEEEC-------CCSSSSTTHHHHHHHHTTEEEEEEE
T ss_pred             EEecCCC---hhHH--HHHHHHHHHhCCCCeEEEEEEccCCcccCCCHHHHHHHHHHHHHHCCCEEEEEe
Confidence            9987543   2221  3345566779999999998621 11     11 112345567777798876543

>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}

Probab=99.01  E-value=2.5e-09  Score=102.42  Aligned_cols=107  Identities=18%  Similarity=0.112  Sum_probs=69.2

Q ss_pred             hHHHhcCCCCCCCCeEEEECCCCcHHHHHHhhC---CCEEEEEecCCCh--hHHHHHHHhCC---CCeeeecccC-CCCC
Q 046488          314 LIPEVLDIKPGEIRIGLDFSIGTGTFAARMREF---NVTLVSAIINLGA--PFNEMIALRGL---VPLYITINQR-VPFF  384 (480)
Q Consensus       314 ~I~~vL~l~~g~iR~VLDVGCGtG~fAa~Lae~---gV~Vv~vd~d~~~--~~~~~iA~rgl---ip~~~~~ae~-LPFp  384 (480)
                      ++..++.+.++  .+|||||||+|.++..|++.   +..+++++++...  .+...++..+.   +.+..+++.. ++..
T Consensus        54 ~l~~l~~~~~~--~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~  131 (248)
T 3tfw_A           54 FLALLVRLTQA--KRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLESL  131 (248)
T ss_dssp             HHHHHHHHHTC--SEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHTC
T ss_pred             HHHHHHhhcCC--CEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHhc
Confidence            34444444444  48999999999999999987   6788888875211  11122222232   3344555333 4543


Q ss_pred             C--CccchheecccccCccChhcHHHHHHHHHhcccCCcEEEEeec
Q 046488          385 D--NTLDLIHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDSF  428 (480)
Q Consensus       385 d--~SFDlV~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~f  428 (480)
                      +  ++||+|++....   ..   ...++.++.|+|||||++++++.
T Consensus       132 ~~~~~fD~V~~d~~~---~~---~~~~l~~~~~~LkpGG~lv~~~~  171 (248)
T 3tfw_A          132 GECPAFDLIFIDADK---PN---NPHYLRWALRYSRPGTLIIGDNV  171 (248)
T ss_dssp             CSCCCCSEEEECSCG---GG---HHHHHHHHHHTCCTTCEEEEECC
T ss_pred             CCCCCeEEEEECCch---HH---HHHHHHHHHHhcCCCeEEEEeCC
Confidence            3  499999975421   11   24689999999999999998753

>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*

Probab=99.01  E-value=1e-09  Score=109.04  Aligned_cols=122  Identities=12%  Similarity=-0.037  Sum_probs=79.3

Q ss_pred             CCeEEEECCCCcHHHHHHhhC--CCEEEEEecCCChhHHHHHHHhC-----------CCCeeeecccCCCC--CCCccch
Q 046488          326 IRIGLDFSIGTGTFAARMREF--NVTLVSAIINLGAPFNEMIALRG-----------LVPLYITINQRVPF--FDNTLDL  390 (480)
Q Consensus       326 iR~VLDVGCGtG~fAa~Lae~--gV~Vv~vd~d~~~~~~~~iA~rg-----------lip~~~~~ae~LPF--pd~SFDl  390 (480)
                      ..+|||||||+|.++..++++  ...+++++++   +.....+++.           .+.++.+++..++.  ++++||+
T Consensus        96 ~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid---~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~fDv  172 (304)
T 3bwc_A           96 PERVLIIGGGDGGVLREVLRHGTVEHCDLVDID---GEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQTPDNTYDV  172 (304)
T ss_dssp             CCEEEEEECTTSHHHHHHHTCTTCCEEEEEESC---HHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSSCTTCEEE
T ss_pred             CCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECC---HHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhccCCceeE
Confidence            358999999999999999987  3477787766   2222232221           23445555555544  4889999


Q ss_pred             heecccccCccChhcH--HHHHHHHHhcccCCcEEEEeecc--CChhhHHHHHHHHHHcCceeeE
Q 046488          391 IHTTRFLDGWIDFVLL--DFILYDWDRVLRPGGLLWIDSFF--CAKEDMNDYLEVFKMLKYKKHK  451 (480)
Q Consensus       391 V~ss~vL~h~~d~~~l--~~~L~EI~RVLKPGG~fiI~~f~--~~~edL~~~~~~l~~lGfkkl~  451 (480)
                      |++......++.. .+  ..++.++.|+|||||++++..-.  ......+.+.+.++..||..+.
T Consensus       173 Ii~d~~~~~~~~~-~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~GF~~v~  236 (304)
T 3bwc_A          173 VIIDTTDPAGPAS-KLFGEAFYKDVLRILKPDGICCNQGESIWLDLELIEKMSRFIRETGFASVQ  236 (304)
T ss_dssp             EEEECC----------CCHHHHHHHHHHEEEEEEEEEEECCTTTCHHHHHHHHHHHHHHTCSEEE
T ss_pred             EEECCCCccccch-hhhHHHHHHHHHHhcCCCcEEEEecCCcccchHHHHHHHHHHHhCCCCcEE
Confidence            9986554333221 11  35899999999999999886321  1223456677888999998664

>2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A*

Probab=99.00  E-value=3.8e-10  Score=112.81  Aligned_cols=118  Identities=11%  Similarity=-0.030  Sum_probs=69.8

Q ss_pred             CeEEEECCCCcHHHHHHhhCCCEEEEEec----CCChhHHHHHHHhC----CCCeeee-cccCCCCCCCccchheecccc
Q 046488          327 RIGLDFSIGTGTFAARMREFNVTLVSAII----NLGAPFNEMIALRG----LVPLYIT-INQRVPFFDNTLDLIHTTRFL  397 (480)
Q Consensus       327 R~VLDVGCGtG~fAa~Lae~gV~Vv~vd~----d~~~~~~~~iA~rg----lip~~~~-~ae~LPFpd~SFDlV~ss~vL  397 (480)
                      .+|||+|||+|.++..+++++ .|+++++    ...  .......+.    .+.+..+ ++..+  ++++||+|+|..++
T Consensus        84 ~~VLDlGcG~G~~s~~la~~~-~V~gvD~~~~~~~~--~~~~~~~~~~~~~~v~~~~~~D~~~l--~~~~fD~V~sd~~~  158 (305)
T 2p41_A           84 GKVVDLGCGRGGWSYYCGGLK-NVREVKGLTKGGPG--HEEPIPMSTYGWNLVRLQSGVDVFFI--PPERCDTLLCDIGE  158 (305)
T ss_dssp             EEEEEETCTTSHHHHHHHTST-TEEEEEEECCCSTT--SCCCCCCCSTTGGGEEEECSCCTTTS--CCCCCSEEEECCCC
T ss_pred             CEEEEEcCCCCHHHHHHHhcC-CEEEEeccccCchh--HHHHHHhhhcCCCCeEEEeccccccC--CcCCCCEEEECCcc
Confidence            489999999999999999883 5667665    111  000000011    1223334 34444  46799999997665


Q ss_pred             c--Cc-cChhcHHHHHHHHHhcccCCcEEEEeeccCChhhHHHHHHHHHHcCceee
Q 046488          398 D--GW-IDFVLLDFILYDWDRVLRPGGLLWIDSFFCAKEDMNDYLEVFKMLKYKKH  450 (480)
Q Consensus       398 ~--h~-~d~~~l~~~L~EI~RVLKPGG~fiI~~f~~~~edL~~~~~~l~~lGfkkl  450 (480)
                      +  ++ .+......+|.++.|+|||||.|++..+.....+...+...++.. |..+
T Consensus       159 ~~g~~~~d~~~~l~~L~~~~~~LkpGG~~v~kv~~~~~~~~~~~l~~l~~~-f~~v  213 (305)
T 2p41_A          159 SSPNPTVEAGRTLRVLNLVENWLSNNTQFCVKVLNPYMSSVIEKMEALQRK-HGGA  213 (305)
T ss_dssp             CCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEESCCCSHHHHHHHHHHHHH-HCCE
T ss_pred             ccCcchhhHHHHHHHHHHHHHHhCCCCEEEEEeCCCCCchHHHHHHHHHHH-cCCE
Confidence            3  22 122111148999999999999999866654434444444333332 4443

>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*

Probab=99.00  E-value=1.2e-09  Score=105.74  Aligned_cols=120  Identities=12%  Similarity=0.041  Sum_probs=77.9

Q ss_pred             CeEEEECCCCcHHHHHHhhC--CCEEEEEecCCChhHHH----HHHHhCC--CCeeeecccCCCCCCCccchheecc---
Q 046488          327 RIGLDFSIGTGTFAARMREF--NVTLVSAIINLGAPFNE----MIALRGL--VPLYITINQRVPFFDNTLDLIHTTR---  395 (480)
Q Consensus       327 R~VLDVGCGtG~fAa~Lae~--gV~Vv~vd~d~~~~~~~----~iA~rgl--ip~~~~~ae~LPFpd~SFDlV~ss~---  395 (480)
                      .+|||+|||+|.++..+++.  +..+++++++.  .+..    .+...+.  +.+..++... ++++++||+|+++-   
T Consensus       111 ~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~--~~l~~a~~n~~~~~~~~v~~~~~d~~~-~~~~~~fD~Iv~npPy~  187 (276)
T 2b3t_A          111 CRILDLGTGTGAIALALASERPDCEIIAVDRMP--DAVSLAQRNAQHLAIKNIHILQSDWFS-ALAGQQFAMIVSNPPYI  187 (276)
T ss_dssp             CEEEEETCTTSHHHHHHHHHCTTSEEEEECSSH--HHHHHHHHHHHHHTCCSEEEECCSTTG-GGTTCCEEEEEECCCCB
T ss_pred             CEEEEecCCccHHHHHHHHhCCCCEEEEEECCH--HHHHHHHHHHHHcCCCceEEEEcchhh-hcccCCccEEEECCCCC
Confidence            48999999999999999865  67888887652  2222    2222232  3334444333 34478999999973   


Q ss_pred             ----------cccCccCh---------hcHHHHHHHHHhcccCCcEEEEeeccCChhhHHHHHHHHHHcCceeeEE
Q 046488          396 ----------FLDGWIDF---------VLLDFILYDWDRVLRPGGLLWIDSFFCAKEDMNDYLEVFKMLKYKKHKW  452 (480)
Q Consensus       396 ----------vL~h~~d~---------~~l~~~L~EI~RVLKPGG~fiI~~f~~~~edL~~~~~~l~~lGfkkl~W  452 (480)
                                ++.|.+..         .....++.++.++|||||++++..-...   .+.+.++++..||..+..
T Consensus       188 ~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~LkpgG~l~~~~~~~~---~~~~~~~l~~~Gf~~v~~  260 (276)
T 2b3t_A          188 DEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHGWQQ---GEAVRQAFILAGYHDVET  260 (276)
T ss_dssp             CTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECCSSC---HHHHHHHHHHTTCTTCCE
T ss_pred             CccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECchH---HHHHHHHHHHCCCcEEEE
Confidence                      22222210         1235689999999999999998643322   345667788889976543

>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*

Probab=98.99  E-value=7.4e-10  Score=114.00  Aligned_cols=101  Identities=16%  Similarity=0.153  Sum_probs=74.1

Q ss_pred             CeEEEECCCCcHHHHHHhhCCCEEEEEecCCChh--HHHHHHHhC-CCCeeeecccCCCCCCCccchheecccccCcc--
Q 046488          327 RIGLDFSIGTGTFAARMREFNVTLVSAIINLGAP--FNEMIALRG-LVPLYITINQRVPFFDNTLDLIHTTRFLDGWI--  401 (480)
Q Consensus       327 R~VLDVGCGtG~fAa~Lae~gV~Vv~vd~d~~~~--~~~~iA~rg-lip~~~~~ae~LPFpd~SFDlV~ss~vL~h~~--  401 (480)
                      .+|||+|||+|.++..+++++..+++++++...-  +...+...+ .+.++.+++..+++++++||+|+++..+++..  
T Consensus       235 ~~VLDlGcG~G~~~~~la~~g~~V~gvDis~~al~~A~~n~~~~~~~v~~~~~D~~~~~~~~~~fD~Ii~npp~~~~~~~  314 (381)
T 3dmg_A          235 RQVLDLGAGYGALTLPLARMGAEVVGVEDDLASVLSLQKGLEANALKAQALHSDVDEALTEEARFDIIVTNPPFHVGGAV  314 (381)
T ss_dssp             CEEEEETCTTSTTHHHHHHTTCEEEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTTSCTTCCEEEEEECCCCCTTCSS
T ss_pred             CEEEEEeeeCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEcchhhccccCCCeEEEEECCchhhcccc
Confidence            4899999999999999999998999988763111  111222222 24456667777777789999999988776521  


Q ss_pred             ChhcHHHHHHHHHhcccCCcEEEEee
Q 046488          402 DFVLLDFILYDWDRVLRPGGLLWIDS  427 (480)
Q Consensus       402 d~~~l~~~L~EI~RVLKPGG~fiI~~  427 (480)
                      .......++.++.|+|||||++++..
T Consensus       315 ~~~~~~~~l~~~~~~LkpGG~l~iv~  340 (381)
T 3dmg_A          315 ILDVAQAFVNVAAARLRPGGVFFLVS  340 (381)
T ss_dssp             CCHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cHHHHHHHHHHHHHhcCcCcEEEEEE
Confidence            12233679999999999999999864

>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*

Probab=98.99  E-value=1.8e-09  Score=105.56  Aligned_cols=114  Identities=13%  Similarity=0.168  Sum_probs=80.0

Q ss_pred             CeEEEECCCCcHHHHHHhhCCC-EEEEEecCCChhHHH----HHHHhCC---CCeeeecccCCCCCCCccchheeccccc
Q 046488          327 RIGLDFSIGTGTFAARMREFNV-TLVSAIINLGAPFNE----MIALRGL---VPLYITINQRVPFFDNTLDLIHTTRFLD  398 (480)
Q Consensus       327 R~VLDVGCGtG~fAa~Lae~gV-~Vv~vd~d~~~~~~~----~iA~rgl---ip~~~~~ae~LPFpd~SFDlV~ss~vL~  398 (480)
                      .+|||+|||+|.++..+++.+. .+++++.+.  .+..    .+...+.   +.+..+++..++. +++||+|++...  
T Consensus       127 ~~VLDlgcG~G~~~~~la~~~~~~V~~vD~s~--~~~~~a~~n~~~n~~~~~v~~~~~D~~~~~~-~~~fD~Vi~~~p--  201 (278)
T 2frn_A          127 ELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDP--YTFKFLVENIHLNKVEDRMSAYNMDNRDFPG-ENIADRILMGYV--  201 (278)
T ss_dssp             CEEEETTCTTTTTHHHHHHHTCCEEEEECCCH--HHHHHHHHHHHHTTCTTTEEEECSCTTTCCC-CSCEEEEEECCC--
T ss_pred             CEEEEecccCCHHHHHHHHhCCCEEEEEECCH--HHHHHHHHHHHHcCCCceEEEEECCHHHhcc-cCCccEEEECCc--
Confidence            3899999999999999998876 488887652  2222    2222333   2245566777766 889999998432  


Q ss_pred             CccChhcHHHHHHHHHhcccCCcEEEEeeccCC----hhhHHHHHHHHHHcCceee
Q 046488          399 GWIDFVLLDFILYDWDRVLRPGGLLWIDSFFCA----KEDMNDYLEVFKMLKYKKH  450 (480)
Q Consensus       399 h~~d~~~l~~~L~EI~RVLKPGG~fiI~~f~~~----~edL~~~~~~l~~lGfkkl  450 (480)
                        ...   ..++.++.|+|||||++++..+...    .+..+.+.+.++..||+-.
T Consensus       202 --~~~---~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~i~~~~~~~G~~~~  252 (278)
T 2frn_A          202 --VRT---HEFIPKALSIAKDGAIIHYHNTVPEKLMPREPFETFKRITKEYGYDVE  252 (278)
T ss_dssp             --SSG---GGGHHHHHHHEEEEEEEEEEEEEEGGGTTTTTHHHHHHHHHHTTCEEE
T ss_pred             --hhH---HHHHHHHHHHCCCCeEEEEEEeeccccccccHHHHHHHHHHHcCCeeE
Confidence              111   3489999999999999998765431    2345667888899998643

>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}

Probab=98.99  E-value=6.1e-09  Score=100.68  Aligned_cols=127  Identities=9%  Similarity=0.032  Sum_probs=78.8

Q ss_pred             HHhcCCCCCCCCeEEEECCCCcHHHHHHhhC--CCEEEEEecCCChhHHHHHHHhC--------C---CCeeeecccCC-
Q 046488          316 PEVLDIKPGEIRIGLDFSIGTGTFAARMREF--NVTLVSAIINLGAPFNEMIALRG--------L---VPLYITINQRV-  381 (480)
Q Consensus       316 ~~vL~l~~g~iR~VLDVGCGtG~fAa~Lae~--gV~Vv~vd~d~~~~~~~~iA~rg--------l---ip~~~~~ae~L-  381 (480)
                      ...+...++  .+|||+|||+|.++..++++  +..+++++++.  .+ ...|.+.        .   +.++.++...+ 
T Consensus        29 ~~~~~~~~~--~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~--~~-~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~~  103 (260)
T 2ozv_A           29 ASLVADDRA--CRIADLGAGAGAAGMAVAARLEKAEVTLYERSQ--EM-AEFARRSLELPDNAAFSARIEVLEADVTLRA  103 (260)
T ss_dssp             HHTCCCCSC--EEEEECCSSSSHHHHHHHHHCTTEEEEEEESSH--HH-HHHHHHHTTSGGGTTTGGGEEEEECCTTCCH
T ss_pred             HHHhcccCC--CEEEEeCChHhHHHHHHHHhCCCCeEEEEECCH--HH-HHHHHHHHHhhhhCCCcceEEEEeCCHHHHh
Confidence            344444443  48999999999999999987  46788888652  22 2222221        1   23444555554 


Q ss_pred             ------CCCCCccchheecccccCc---------------cChhcHHHHHHHHHhcccCCcEEEEeeccCChhhHHHHHH
Q 046488          382 ------PFFDNTLDLIHTTRFLDGW---------------IDFVLLDFILYDWDRVLRPGGLLWIDSFFCAKEDMNDYLE  440 (480)
Q Consensus       382 ------PFpd~SFDlV~ss~vL~h~---------------~d~~~l~~~L~EI~RVLKPGG~fiI~~f~~~~edL~~~~~  440 (480)
                            ++++++||+|+++--+...               .....+..++.++.++|||||+|++..   ..+.+..+.+
T Consensus       104 ~~~~~~~~~~~~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~---~~~~~~~~~~  180 (260)
T 2ozv_A          104 KARVEAGLPDEHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSLIS---RPQSVAEIIA  180 (260)
T ss_dssp             HHHHHTTCCTTCEEEEEECCCC---------------------CCHHHHHHHHHHHEEEEEEEEEEE---CGGGHHHHHH
T ss_pred             hhhhhhccCCCCcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEEEE---cHHHHHHHHH
Confidence                  3678999999997222111               111224678999999999999998753   2234555666


Q ss_pred             HHHHcCceeeE
Q 046488          441 VFKMLKYKKHK  451 (480)
Q Consensus       441 ~l~~lGfkkl~  451 (480)
                      .++.. |....
T Consensus       181 ~l~~~-~~~~~  190 (260)
T 2ozv_A          181 ACGSR-FGGLE  190 (260)
T ss_dssp             HHTTT-EEEEE
T ss_pred             HHHhc-CCceE
Confidence            66553 55443

>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*

Probab=98.99  E-value=3.1e-10  Score=107.45  Aligned_cols=97  Identities=14%  Similarity=0.112  Sum_probs=66.6

Q ss_pred             CeEEEECCCCcHHHHHHhhC--CCEEEEEecCCChhHHH----HHHHhCC--CCeeeecccC-CC--CCCCccchheecc
Q 046488          327 RIGLDFSIGTGTFAARMREF--NVTLVSAIINLGAPFNE----MIALRGL--VPLYITINQR-VP--FFDNTLDLIHTTR  395 (480)
Q Consensus       327 R~VLDVGCGtG~fAa~Lae~--gV~Vv~vd~d~~~~~~~----~iA~rgl--ip~~~~~ae~-LP--Fpd~SFDlV~ss~  395 (480)
                      .+|||||||+|.++..+++.  +..+++++++.  ++..    .+...+.  +.++.+++.. ++  +++++||.|++.+
T Consensus        36 ~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~--~~l~~a~~~~~~~~l~nv~~~~~Da~~~l~~~~~~~~~d~v~~~~  113 (218)
T 3dxy_A           36 PVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHS--PGVGACLASAHEEGLSNLRVMCHDAVEVLHKMIPDNSLRMVQLFF  113 (218)
T ss_dssp             CEEEEESCTTCHHHHHHHHHCTTSEEEEECSCH--HHHHHHHHHHHHTTCSSEEEECSCHHHHHHHHSCTTCEEEEEEES
T ss_pred             CeEEEEeeeChHHHHHHHHHCCCCeEEEEEecH--HHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHcCCCChheEEEeC
Confidence            48999999999999999976  56788887652  3322    2233333  2334455544 34  7899999999865


Q ss_pred             cccCccChhcH------HHHHHHHHhcccCCcEEEEe
Q 046488          396 FLDGWIDFVLL------DFILYDWDRVLRPGGLLWID  426 (480)
Q Consensus       396 vL~h~~d~~~l------~~~L~EI~RVLKPGG~fiI~  426 (480)
                      .. +|......      ..++.++.|+|||||+|++.
T Consensus       114 ~~-p~~~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~  149 (218)
T 3dxy_A          114 PD-PWHKARHNKRRIVQVPFAELVKSKLQLGGVFHMA  149 (218)
T ss_dssp             CC-CCCSGGGGGGSSCSHHHHHHHHHHEEEEEEEEEE
T ss_pred             CC-CccchhhhhhhhhhHHHHHHHHHHcCCCcEEEEE
Confidence            43 34322110      24899999999999999885

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13

Probab=98.98  E-value=2.2e-09  Score=103.77  Aligned_cols=120  Identities=17%  Similarity=0.191  Sum_probs=80.1

Q ss_pred             HhcCCCCCCCCeEEEECCCCcHHHHHHhhC---CCEEEEEecCCChhHHH----HHHHhCC---CCeeeecccCCCCCCC
Q 046488          317 EVLDIKPGEIRIGLDFSIGTGTFAARMREF---NVTLVSAIINLGAPFNE----MIALRGL---VPLYITINQRVPFFDN  386 (480)
Q Consensus       317 ~vL~l~~g~iR~VLDVGCGtG~fAa~Lae~---gV~Vv~vd~d~~~~~~~----~iA~rgl---ip~~~~~ae~LPFpd~  386 (480)
                      ..+.+.++.  +|||+|||+|.++..+++.   +..+++++.+.  .+..    .+...+.   +.+..++.... ++++
T Consensus       106 ~~~~~~~~~--~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~--~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~~  180 (277)
T 1o54_A          106 MMLDVKEGD--RIIDTGVGSGAMCAVLARAVGSSGKVFAYEKRE--EFAKLAESNLTKWGLIERVTIKVRDISEG-FDEK  180 (277)
T ss_dssp             HHTTCCTTC--EEEEECCTTSHHHHHHHHHTTTTCEEEEECCCH--HHHHHHHHHHHHTTCGGGEEEECCCGGGC-CSCC
T ss_pred             HHhCCCCCC--EEEEECCcCCHHHHHHHHHhCCCcEEEEEECCH--HHHHHHHHHHHHcCCCCCEEEEECCHHHc-ccCC
Confidence            344555554  8999999999999999886   56788877652  2222    1222232   23334444444 6778


Q ss_pred             ccchheecccccCccChhcHHHHHHHHHhcccCCcEEEEeeccCChhhHHHHHHHHHHcCceeeE
Q 046488          387 TLDLIHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDSFFCAKEDMNDYLEVFKMLKYKKHK  451 (480)
Q Consensus       387 SFDlV~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~f~~~~edL~~~~~~l~~lGfkkl~  451 (480)
                      +||+|++.     .+++   ..++.++.|+|||||++++...  ..+.+..+.+.++..||..+.
T Consensus       181 ~~D~V~~~-----~~~~---~~~l~~~~~~L~pgG~l~~~~~--~~~~~~~~~~~l~~~gf~~~~  235 (277)
T 1o54_A          181 DVDALFLD-----VPDP---WNYIDKCWEALKGGGRFATVCP--TTNQVQETLKKLQELPFIRIE  235 (277)
T ss_dssp             SEEEEEEC-----CSCG---GGTHHHHHHHEEEEEEEEEEES--SHHHHHHHHHHHHHSSEEEEE
T ss_pred             ccCEEEEC-----CcCH---HHHHHHHHHHcCCCCEEEEEeC--CHHHHHHHHHHHHHCCCceeE
Confidence            99999973     3333   2489999999999999988642  234456667778888997543

>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}

Probab=98.97  E-value=7.3e-10  Score=106.19  Aligned_cols=115  Identities=16%  Similarity=0.193  Sum_probs=71.9

Q ss_pred             CeEEEECCCCcHHHHHHhhC--CCEEEEEecCCChhHHH----HHHH------hCC--CCeeeecccC-CC--CCCCccc
Q 046488          327 RIGLDFSIGTGTFAARMREF--NVTLVSAIINLGAPFNE----MIAL------RGL--VPLYITINQR-VP--FFDNTLD  389 (480)
Q Consensus       327 R~VLDVGCGtG~fAa~Lae~--gV~Vv~vd~d~~~~~~~----~iA~------rgl--ip~~~~~ae~-LP--Fpd~SFD  389 (480)
                      .+|||||||+|.++..|++.  +..+++++++.  .+..    .+..      .+.  +.++.+++.. +|  |++++||
T Consensus        48 ~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~--~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~~~~~~~~~D  125 (235)
T 3ckk_A           48 VEFADIGCGYGGLLVELSPLFPDTLILGLEIRV--KVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFYKGQLT  125 (235)
T ss_dssp             EEEEEETCTTCHHHHHHGGGSTTSEEEEEESCH--HHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCHHHHCCTTCEE
T ss_pred             CeEEEEccCCcHHHHHHHHHCCCCeEEEEECCH--HHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHhhhhhCCCcCee
Confidence            47999999999999999986  56788888752  2322    1111      122  3345566655 77  8899999


Q ss_pred             hheecccccCccCh------hcHHHHHHHHHhcccCCcEEEEeeccCChhhHHHHHHHHHHcC
Q 046488          390 LIHTTRFLDGWIDF------VLLDFILYDWDRVLRPGGLLWIDSFFCAKEDMNDYLEVFKMLK  446 (480)
Q Consensus       390 lV~ss~vL~h~~d~------~~l~~~L~EI~RVLKPGG~fiI~~f~~~~edL~~~~~~l~~lG  446 (480)
                      .|++.+.- +|...      .....++.++.|+|||||.|++..-.  ..-.....+.+...+
T Consensus       126 ~v~~~~~d-p~~k~~h~krr~~~~~~l~~~~~~LkpGG~l~~~td~--~~~~~~~~~~l~~~~  185 (235)
T 3ckk_A          126 KMFFLFPD-PHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTITDV--LELHDWMCTHFEEHP  185 (235)
T ss_dssp             EEEEESCC------------CCCHHHHHHHHHHEEEEEEEEEEESC--HHHHHHHHHHHHTST
T ss_pred             EEEEeCCC-chhhhhhhhhhhhhHHHHHHHHHHCCCCCEEEEEeCC--HHHHHHHHHHHHHCC
Confidence            99865432 23210      00135899999999999999885311  111233445555554

>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*

Probab=98.95  E-value=2.3e-09  Score=99.39  Aligned_cols=107  Identities=13%  Similarity=0.041  Sum_probs=68.3

Q ss_pred             hHHHhcCCCCCCCCeEEEECCCCcHHHHHHhhC---CCEEEEEecCCCh--hHHHHHHHhCC---CCeeeeccc-CCC-C
Q 046488          314 LIPEVLDIKPGEIRIGLDFSIGTGTFAARMREF---NVTLVSAIINLGA--PFNEMIALRGL---VPLYITINQ-RVP-F  383 (480)
Q Consensus       314 ~I~~vL~l~~g~iR~VLDVGCGtG~fAa~Lae~---gV~Vv~vd~d~~~--~~~~~iA~rgl---ip~~~~~ae-~LP-F  383 (480)
                      ++..++.+.++  .+|||+|||+|.++..+++.   +..+++++++...  .+...+...+.   +.+..+++. .++ +
T Consensus        49 ~l~~l~~~~~~--~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~  126 (223)
T 3duw_A           49 FLQLLVQIQGA--RNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQQI  126 (223)
T ss_dssp             HHHHHHHHHTC--SEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHH
T ss_pred             HHHHHHHhhCC--CEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHH
Confidence            44444444444  48999999999999999987   6788888865211  11122223343   334444432 222 1


Q ss_pred             C---CCccchheecccccCccChhcHHHHHHHHHhcccCCcEEEEeec
Q 046488          384 F---DNTLDLIHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDSF  428 (480)
Q Consensus       384 p---d~SFDlV~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~f  428 (480)
                      +   .++||+|++.....   .   ...++.++.|+|||||++++.+.
T Consensus       127 ~~~~~~~fD~v~~d~~~~---~---~~~~l~~~~~~L~pgG~lv~~~~  168 (223)
T 3duw_A          127 ENEKYEPFDFIFIDADKQ---N---NPAYFEWALKLSRPGTVIIGDNV  168 (223)
T ss_dssp             HHTTCCCCSEEEECSCGG---G---HHHHHHHHHHTCCTTCEEEEESC
T ss_pred             HhcCCCCcCEEEEcCCcH---H---HHHHHHHHHHhcCCCcEEEEeCC
Confidence            1   26799999765421   1   24689999999999999998753

>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A

Probab=98.95  E-value=1.1e-09  Score=104.09  Aligned_cols=111  Identities=10%  Similarity=-0.008  Sum_probs=69.4

Q ss_pred             hhHHHhcCC-CCCCCCeEEEECCCCcHHHHHHhhC----CCEEEEEecCCChhHHHHHHHh---CC--------------
Q 046488          313 FLIPEVLDI-KPGEIRIGLDFSIGTGTFAARMREF----NVTLVSAIINLGAPFNEMIALR---GL--------------  370 (480)
Q Consensus       313 ~~I~~vL~l-~~g~iR~VLDVGCGtG~fAa~Lae~----gV~Vv~vd~d~~~~~~~~iA~r---gl--------------  370 (480)
                      ..+..++.. ......+|||+|||+|.++..+++.    +..++++|++.  .+.. .|++   ..              
T Consensus        38 ~l~~~~l~~~~~~~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~--~~l~-~A~~~~~~~~~~~~~~~~~~~~~  114 (250)
T 1o9g_A           38 EIFQRALARLPGDGPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDP--APLE-LAAKNLALLSPAGLTARELERRE  114 (250)
T ss_dssp             HHHHHHHHTSSCCSCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCH--HHHH-HHHHHHHTTSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcccCCCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCH--HHHH-HHHHHHHHhhhccccccchhhhh
Confidence            345555542 2223358999999999999999876    56788888652  2222 2211   11              


Q ss_pred             -------------------CC-------------eeeecccC-CCC----CCCccchheecccccCccC------hhcHH
Q 046488          371 -------------------VP-------------LYITINQR-VPF----FDNTLDLIHTTRFLDGWID------FVLLD  407 (480)
Q Consensus       371 -------------------ip-------------~~~~~ae~-LPF----pd~SFDlV~ss~vL~h~~d------~~~l~  407 (480)
                                         +.             +..++... ++.    .+++||+|+|.-.+.+..+      .....
T Consensus       115 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~~~~~~~~~  194 (250)
T 1o9g_A          115 QSERFGKPSYLEAAQAARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVA  194 (250)
T ss_dssp             HHHHHCCHHHHHHHHHHHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHH
T ss_pred             hhhhcccccchhhhhhhhhhhhhccccccccccceeecccccccccccccCCCCceEEEeCCCeeccccccccccccHHH
Confidence                               22             44444333 211    3458999999765443322      12335


Q ss_pred             HHHHHHHhcccCCcEEEEe
Q 046488          408 FILYDWDRVLRPGGLLWID  426 (480)
Q Consensus       408 ~~L~EI~RVLKPGG~fiI~  426 (480)
                      .++.++.|+|||||++++.
T Consensus       195 ~~l~~~~~~LkpgG~l~~~  213 (250)
T 1o9g_A          195 GLLRSLASALPAHAVIAVT  213 (250)
T ss_dssp             HHHHHHHHHSCTTCEEEEE
T ss_pred             HHHHHHHHhcCCCcEEEEe
Confidence            7999999999999999985

>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}

Probab=98.95  E-value=2.8e-09  Score=100.68  Aligned_cols=106  Identities=13%  Similarity=0.120  Sum_probs=70.5

Q ss_pred             hHHHhcCCCCCCCCeEEEECCCCcHHHHHHhh--CCCEEEEEecCCCh--hHHHHHHHhC---CCCeeeecc-cCCC-CC
Q 046488          314 LIPEVLDIKPGEIRIGLDFSIGTGTFAARMRE--FNVTLVSAIINLGA--PFNEMIALRG---LVPLYITIN-QRVP-FF  384 (480)
Q Consensus       314 ~I~~vL~l~~g~iR~VLDVGCGtG~fAa~Lae--~gV~Vv~vd~d~~~--~~~~~iA~rg---lip~~~~~a-e~LP-Fp  384 (480)
                      ++..++.+.++  .+|||+|||+|.++..|++  .+..+++++++...  .+...+...+   .+.+..+++ +.+| ..
T Consensus        62 ~l~~~~~~~~~--~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~  139 (232)
T 3ntv_A           62 LIKQLIRMNNV--KNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQFENVN  139 (232)
T ss_dssp             HHHHHHHHHTC--CEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCHHHHT
T ss_pred             HHHHHHhhcCC--CEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhhc
Confidence            34444444443  4899999999999999998  46788888865211  1112222233   234555554 3455 55


Q ss_pred             CCccchheecccccCccChhcHHHHHHHHHhcccCCcEEEEee
Q 046488          385 DNTLDLIHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDS  427 (480)
Q Consensus       385 d~SFDlV~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~  427 (480)
                      +++||+|++.....   .   ...++.++.|+|||||++++++
T Consensus       140 ~~~fD~V~~~~~~~---~---~~~~l~~~~~~LkpgG~lv~d~  176 (232)
T 3ntv_A          140 DKVYDMIFIDAAKA---Q---SKKFFEIYTPLLKHQGLVITDN  176 (232)
T ss_dssp             TSCEEEEEEETTSS---S---HHHHHHHHGGGEEEEEEEEEEC
T ss_pred             cCCccEEEEcCcHH---H---HHHHHHHHHHhcCCCeEEEEee
Confidence            89999999754321   2   2568999999999999999974

>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}

Probab=98.94  E-value=2e-09  Score=99.14  Aligned_cols=97  Identities=27%  Similarity=0.207  Sum_probs=66.3

Q ss_pred             HhcCCCCCCCCeEEEECCCCcHHHHHHhhCC---CEEEEEecCCChhHHH----HHHHhCC--CCeeeecccCCCCC-CC
Q 046488          317 EVLDIKPGEIRIGLDFSIGTGTFAARMREFN---VTLVSAIINLGAPFNE----MIALRGL--VPLYITINQRVPFF-DN  386 (480)
Q Consensus       317 ~vL~l~~g~iR~VLDVGCGtG~fAa~Lae~g---V~Vv~vd~d~~~~~~~----~iA~rgl--ip~~~~~ae~LPFp-d~  386 (480)
                      +.+.+.++.  +|||+|||+|.++..+++.+   ..+++++++.  .+..    .....+.  +.+..++.. .+++ ++
T Consensus        71 ~~~~~~~~~--~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~--~~~~~a~~~~~~~~~~~v~~~~~d~~-~~~~~~~  145 (215)
T 2yxe_A           71 ELLDLKPGM--KVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIP--ELAEKAERTLRKLGYDNVIVIVGDGT-LGYEPLA  145 (215)
T ss_dssp             HHTTCCTTC--EEEEECCTTSHHHHHHHHHHCTTSEEEEEESCH--HHHHHHHHHHHHHTCTTEEEEESCGG-GCCGGGC
T ss_pred             HhhCCCCCC--EEEEECCCccHHHHHHHHHhCCCCEEEEEeCCH--HHHHHHHHHHHHcCCCCeEEEECCcc-cCCCCCC
Confidence            445555553  89999999999999998864   6888888652  2222    1222232  333344432 2333 78


Q ss_pred             ccchheecccccCccChhcHHHHHHHHHhcccCCcEEEEee
Q 046488          387 TLDLIHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDS  427 (480)
Q Consensus       387 SFDlV~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~  427 (480)
                      +||+|++..+++++.         .++.|+|||||++++..
T Consensus       146 ~fD~v~~~~~~~~~~---------~~~~~~L~pgG~lv~~~  177 (215)
T 2yxe_A          146 PYDRIYTTAAGPKIP---------EPLIRQLKDGGKLLMPV  177 (215)
T ss_dssp             CEEEEEESSBBSSCC---------HHHHHTEEEEEEEEEEE
T ss_pred             CeeEEEECCchHHHH---------HHHHHHcCCCcEEEEEE
Confidence            999999999887654         47899999999998864

>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46

Probab=98.94  E-value=9.9e-10  Score=101.83  Aligned_cols=95  Identities=8%  Similarity=0.089  Sum_probs=64.1

Q ss_pred             CeEEEECCCCcHHHHHHhhCCC-EEEEEecCCChhHHH----HHHHhCC----CCeeeecccCC-CC-CCCc-cchheec
Q 046488          327 RIGLDFSIGTGTFAARMREFNV-TLVSAIINLGAPFNE----MIALRGL----VPLYITINQRV-PF-FDNT-LDLIHTT  394 (480)
Q Consensus       327 R~VLDVGCGtG~fAa~Lae~gV-~Vv~vd~d~~~~~~~----~iA~rgl----ip~~~~~ae~L-PF-pd~S-FDlV~ss  394 (480)
                      .+|||+|||+|.++..++.++. .+++++++.  .+..    .+...+.    +.+..+++..+ +. ++++ ||+|++.
T Consensus        55 ~~vLDlGcGtG~~~~~~~~~~~~~v~gvD~s~--~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~  132 (201)
T 2ift_A           55 SECLDGFAGSGSLGFEALSRQAKKVTFLELDK--TVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFLD  132 (201)
T ss_dssp             CEEEETTCTTCHHHHHHHHTTCSEEEEECSCH--HHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEEC
T ss_pred             CeEEEcCCccCHHHHHHHHccCCEEEEEECCH--HHHHHHHHHHHHhCCCccceEEEECCHHHHHHhhccCCCCCEEEEC
Confidence            3899999999999998777764 788887652  2322    2222232    23444554443 32 4788 9999987


Q ss_pred             ccccCccChhcHHHHHHHH--HhcccCCcEEEEee
Q 046488          395 RFLDGWIDFVLLDFILYDW--DRVLRPGGLLWIDS  427 (480)
Q Consensus       395 ~vL~h~~d~~~l~~~L~EI--~RVLKPGG~fiI~~  427 (480)
                      ..++ ...   ...++.++  .|+|||||++++..
T Consensus       133 ~~~~-~~~---~~~~l~~~~~~~~LkpgG~l~i~~  163 (201)
T 2ift_A          133 PPFH-FNL---AEQAISLLCENNWLKPNALIYVET  163 (201)
T ss_dssp             CCSS-SCH---HHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred             CCCC-Ccc---HHHHHHHHHhcCccCCCcEEEEEE
Confidence            6643 222   25688888  78999999998864

>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1

Probab=98.94  E-value=1e-09  Score=108.91  Aligned_cols=97  Identities=23%  Similarity=0.132  Sum_probs=68.6

Q ss_pred             HhcCCCCCCCCeEEEECCCCcHHHHHHhhCCC---EEEEEecCCChhHHH----HHHHhCC--CCeeeecccCCCCCCCc
Q 046488          317 EVLDIKPGEIRIGLDFSIGTGTFAARMREFNV---TLVSAIINLGAPFNE----MIALRGL--VPLYITINQRVPFFDNT  387 (480)
Q Consensus       317 ~vL~l~~g~iR~VLDVGCGtG~fAa~Lae~gV---~Vv~vd~d~~~~~~~----~iA~rgl--ip~~~~~ae~LPFpd~S  387 (480)
                      +.+.+.++.  +|||+|||+|.++..+++.+.   .+++++++.  .+..    .++..+.  +.+..++....+..+++
T Consensus        69 ~~l~~~~~~--~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~--~~~~~a~~~~~~~g~~~v~~~~~d~~~~~~~~~~  144 (317)
T 1dl5_A           69 EWVGLDKGM--RVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSR--KICEIAKRNVERLGIENVIFVCGDGYYGVPEFSP  144 (317)
T ss_dssp             HHTTCCTTC--EEEEECCTTSHHHHHHHHHHCTTCEEEEEESCH--HHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCC
T ss_pred             HhcCCCCcC--EEEEecCCchHHHHHHHHhcCCCCEEEEEECCH--HHHHHHHHHHHHcCCCCeEEEECChhhccccCCC
Confidence            455666654  899999999999999988643   488887652  2222    2222232  33445556665556789


Q ss_pred             cchheecccccCccChhcHHHHHHHHHhcccCCcEEEEe
Q 046488          388 LDLIHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWID  426 (480)
Q Consensus       388 FDlV~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~  426 (480)
                      ||+|++..+++|+.         .++.++|||||++++.
T Consensus       145 fD~Iv~~~~~~~~~---------~~~~~~LkpgG~lvi~  174 (317)
T 1dl5_A          145 YDVIFVTVGVDEVP---------ETWFTQLKEGGRVIVP  174 (317)
T ss_dssp             EEEEEECSBBSCCC---------HHHHHHEEEEEEEEEE
T ss_pred             eEEEEEcCCHHHHH---------HHHHHhcCCCcEEEEE
Confidence            99999999887654         4678999999999885

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}

Probab=98.93  E-value=7.1e-09  Score=97.06  Aligned_cols=119  Identities=13%  Similarity=0.059  Sum_probs=76.4

Q ss_pred             HhcCCCCCCCCeEEEECCCCcHHHHHHhhCCCEEEEEecCCChhHHH----HHHHhCC---CCeeeecccCCCCCCCccc
Q 046488          317 EVLDIKPGEIRIGLDFSIGTGTFAARMREFNVTLVSAIINLGAPFNE----MIALRGL---VPLYITINQRVPFFDNTLD  389 (480)
Q Consensus       317 ~vL~l~~g~iR~VLDVGCGtG~fAa~Lae~gV~Vv~vd~d~~~~~~~----~iA~rgl---ip~~~~~ae~LPFpd~SFD  389 (480)
                      ..+++.++.  +|||+|||+|.++..+++.+..+++++++.  .+..    ..+..+.   +....++.....+++++||
T Consensus        85 ~~~~~~~~~--~vldiG~G~G~~~~~l~~~~~~v~~vD~~~--~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D  160 (248)
T 2yvl_A           85 LKLNLNKEK--RVLEFGTGSGALLAVLSEVAGEVWTFEAVE--EFYKTAQKNLKKFNLGKNVKFFNVDFKDAEVPEGIFH  160 (248)
T ss_dssp             HHTTCCTTC--EEEEECCTTSHHHHHHHHHSSEEEEECSCH--HHHHHHHHHHHHTTCCTTEEEECSCTTTSCCCTTCBS
T ss_pred             HhcCCCCCC--EEEEeCCCccHHHHHHHHhCCEEEEEecCH--HHHHHHHHHHHHcCCCCcEEEEEcChhhcccCCCccc
Confidence            344455553  899999999999999988777888887652  2222    2222232   2233444444433678999


Q ss_pred             hheecccccCccChhcHHHHHHHHHhcccCCcEEEEeeccCChhhHHHHHHHHHHcCceee
Q 046488          390 LIHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDSFFCAKEDMNDYLEVFKMLKYKKH  450 (480)
Q Consensus       390 lV~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~f~~~~edL~~~~~~l~~lGfkkl  450 (480)
                      +|++.     ..++   ..++.++.++|||||++++....  .+.+..+...++.. |..+
T Consensus       161 ~v~~~-----~~~~---~~~l~~~~~~L~~gG~l~~~~~~--~~~~~~~~~~l~~~-f~~~  210 (248)
T 2yvl_A          161 AAFVD-----VREP---WHYLEKVHKSLMEGAPVGFLLPT--ANQVIKLLESIENY-FGNL  210 (248)
T ss_dssp             EEEEC-----SSCG---GGGHHHHHHHBCTTCEEEEEESS--HHHHHHHHHHSTTT-EEEE
T ss_pred             EEEEC-----CcCH---HHHHHHHHHHcCCCCEEEEEeCC--HHHHHHHHHHHHhh-CCcc
Confidence            99973     2333   24899999999999999886422  23444555555554 6644

>3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A*

Probab=98.93  E-value=3.4e-10  Score=118.28  Aligned_cols=94  Identities=15%  Similarity=0.042  Sum_probs=70.4

Q ss_pred             CCeEEEECCC------CcHHHHHHhhC---CCEEEEEecCCChhHHHHHHHhCCCCeeeecccCCCCC------CCccch
Q 046488          326 IRIGLDFSIG------TGTFAARMREF---NVTLVSAIINLGAPFNEMIALRGLVPLYITINQRVPFF------DNTLDL  390 (480)
Q Consensus       326 iR~VLDVGCG------tG~fAa~Lae~---gV~Vv~vd~d~~~~~~~~iA~rglip~~~~~ae~LPFp------d~SFDl  390 (480)
                      ..+|||||||      ||..+..+++.   +..++++|++..  +   .+....+.++.++++.+||.      +++||+
T Consensus       217 ~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~--m---~~~~~rI~fv~GDa~dlpf~~~l~~~d~sFDl  291 (419)
T 3sso_A          217 QVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDK--S---HVDELRIRTIQGDQNDAEFLDRIARRYGPFDI  291 (419)
T ss_dssp             CCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCC--G---GGCBTTEEEEECCTTCHHHHHHHHHHHCCEEE
T ss_pred             CCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHH--H---hhcCCCcEEEEecccccchhhhhhcccCCccE
Confidence            3589999999      77777666653   678899888753  2   11223456677888889998      899999


Q ss_pred             heecccccCccChhcHHHHHHHHHhcccCCcEEEEeec
Q 046488          391 IHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDSF  428 (480)
Q Consensus       391 V~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~f  428 (480)
                      |++.. .+++.+.   ..+|.|++|+|||||+|++.++
T Consensus       292 Visdg-sH~~~d~---~~aL~el~rvLKPGGvlVi~Dl  325 (419)
T 3sso_A          292 VIDDG-SHINAHV---RTSFAALFPHVRPGGLYVIEDM  325 (419)
T ss_dssp             EEECS-CCCHHHH---HHHHHHHGGGEEEEEEEEEECG
T ss_pred             EEECC-cccchhH---HHHHHHHHHhcCCCeEEEEEec
Confidence            99864 3444333   5799999999999999999753

>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46

Probab=98.93  E-value=8.3e-10  Score=98.67  Aligned_cols=95  Identities=14%  Similarity=0.043  Sum_probs=64.0

Q ss_pred             CeEEEECCCCcHHHHHHhhCC-CEEEEEecCCChhHHH----HHHHhCC---CCeeeecccC----CCCCCCccchheec
Q 046488          327 RIGLDFSIGTGTFAARMREFN-VTLVSAIINLGAPFNE----MIALRGL---VPLYITINQR----VPFFDNTLDLIHTT  394 (480)
Q Consensus       327 R~VLDVGCGtG~fAa~Lae~g-V~Vv~vd~d~~~~~~~----~iA~rgl---ip~~~~~ae~----LPFpd~SFDlV~ss  394 (480)
                      .+|||+|||+|.++..+++++ ..+++++++.  .+..    .+...+.   +.++.+++..    +++.+++||+|++.
T Consensus        46 ~~vLD~GcG~G~~~~~~~~~~~~~v~~vD~~~--~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~fD~i~~~  123 (187)
T 2fhp_A           46 GMALDLYSGSGGLAIEAVSRGMDKSICIEKNF--AALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLVLLD  123 (187)
T ss_dssp             CEEEETTCTTCHHHHHHHHTTCSEEEEEESCH--HHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEEC
T ss_pred             CCEEEeCCccCHHHHHHHHcCCCEEEEEECCH--HHHHHHHHHHHHhCCCcceEEEECcHHHHHHHHHhcCCCCCEEEEC
Confidence            489999999999999888875 5788888762  2222    2222232   3344444332    34457899999987


Q ss_pred             ccccCccChhcHHHHHHHH--HhcccCCcEEEEee
Q 046488          395 RFLDGWIDFVLLDFILYDW--DRVLRPGGLLWIDS  427 (480)
Q Consensus       395 ~vL~h~~d~~~l~~~L~EI--~RVLKPGG~fiI~~  427 (480)
                      ..++ ....   ..++..+  .|+|||||++++..
T Consensus       124 ~~~~-~~~~---~~~~~~l~~~~~L~~gG~l~~~~  154 (187)
T 2fhp_A          124 PPYA-KQEI---VSQLEKMLERQLLTNEAVIVCET  154 (187)
T ss_dssp             CCGG-GCCH---HHHHHHHHHTTCEEEEEEEEEEE
T ss_pred             CCCC-chhH---HHHHHHHHHhcccCCCCEEEEEe
Confidence            6643 2222   3466777  99999999998864

>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54

Probab=98.92  E-value=8.5e-10  Score=104.77  Aligned_cols=141  Identities=9%  Similarity=0.085  Sum_probs=80.1

Q ss_pred             hhHHHhcCCCCC---CCCeEEEECCCCcHHHHHHhhC--CCEEEEEecCCChhHHH----HHHHhCC---CCeeeecccC
Q 046488          313 FLIPEVLDIKPG---EIRIGLDFSIGTGTFAARMREF--NVTLVSAIINLGAPFNE----MIALRGL---VPLYITINQR  380 (480)
Q Consensus       313 ~~I~~vL~l~~g---~iR~VLDVGCGtG~fAa~Lae~--gV~Vv~vd~d~~~~~~~----~iA~rgl---ip~~~~~ae~  380 (480)
                      .++..++...+.   ...+|||+|||+|.++..++++  +..+++++++.  .+..    .+...+.   +.++.++++.
T Consensus        50 ~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~--~~~~~a~~~~~~~~~~~~v~~~~~d~~~  127 (254)
T 2h00_A           50 HWVEDLIGHQDSDKSTLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDD--MCFNYAKKNVEQNNLSDLIKVVKVPQKT  127 (254)
T ss_dssp             HHHHHHHCCCCGGGCCCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCH--HHHHHHHHHHHHTTCTTTEEEEECCTTC
T ss_pred             HHHHHHHhhccccCCCCCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCH--HHHHHHHHHHHHcCCCccEEEEEcchhh
Confidence            355556653321   2358999999999999988875  67888888753  2222    2222232   3344555443


Q ss_pred             C---CCC---CCccchheecccccCcc-C-----------hhcHHHHHHHHHhcccCCcEEEEee--------------c
Q 046488          381 V---PFF---DNTLDLIHTTRFLDGWI-D-----------FVLLDFILYDWDRVLRPGGLLWIDS--------------F  428 (480)
Q Consensus       381 L---PFp---d~SFDlV~ss~vL~h~~-d-----------~~~l~~~L~EI~RVLKPGG~fiI~~--------------f  428 (480)
                      .   +++   +++||+|++.-.+++.. +           ......++.+++|+|||||.+.+..              +
T Consensus       128 ~~~~~~~~~~~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~LkpgG~l~~~~~~~~~~~~~l~~~g~  207 (254)
T 2h00_A          128 LLMDALKEESEIIYDFCMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFVKRIIHDSLQLKKRLRW  207 (254)
T ss_dssp             SSTTTSTTCCSCCBSEEEECCCCC-------------------------CTTTTHHHHTHHHHHHHHHHHHHHHGGGBSC
T ss_pred             hhhhhhhcccCCcccEEEECCCCccCcchhcccccccccccCCHHHHhhhHHHHEecCCEEEEEHHHHHHHHhcccceEE
Confidence            2   455   37999999974433221 0           0001245778889999988765531              0


Q ss_pred             c----CChhhHHHHHHHHHHcCceeeEEEEe
Q 046488          429 F----CAKEDMNDYLEVFKMLKYKKHKWVVV  455 (480)
Q Consensus       429 ~----~~~edL~~~~~~l~~lGfkkl~W~~~  455 (480)
                      .    .....++.+.++++..||+.+.....
T Consensus       208 ~~~~~~~~~~~~~~~~~l~~~Gf~~v~~~~~  238 (254)
T 2h00_A          208 YSCMLGKKCSLAPLKEELRIQGVPKVTYTEF  238 (254)
T ss_dssp             EEEEESSTTSHHHHHHHHHHTTCSEEEEEEE
T ss_pred             EEECCCChhHHHHHHHHHHHcCCCceEEEEE
Confidence            0    11122356778899999988765543

>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46

Probab=98.91  E-value=8.7e-10  Score=98.56  Aligned_cols=96  Identities=14%  Similarity=0.082  Sum_probs=63.4

Q ss_pred             CeEEEECCCCcHHHHHHhhCC-CEEEEEecCCChhHHHH----HHHhCC---CCeeeecccC-CCCCCCccchheecccc
Q 046488          327 RIGLDFSIGTGTFAARMREFN-VTLVSAIINLGAPFNEM----IALRGL---VPLYITINQR-VPFFDNTLDLIHTTRFL  397 (480)
Q Consensus       327 R~VLDVGCGtG~fAa~Lae~g-V~Vv~vd~d~~~~~~~~----iA~rgl---ip~~~~~ae~-LPFpd~SFDlV~ss~vL  397 (480)
                      .+|||+|||+|.++..+++++ ..+++++++.  .+...    +...+.   +.+..+++.. ++..+++||+|++...+
T Consensus        33 ~~vLDlGcG~G~~~~~l~~~~~~~v~~vD~~~--~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~i~~~~~~  110 (177)
T 2esr_A           33 GRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNR--KAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTGRFDLVFLDPPY  110 (177)
T ss_dssp             CEEEEETCTTCHHHHHHHHTTCCEEEEECCCH--HHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSCEEEEEECCSS
T ss_pred             CeEEEeCCCCCHHHHHHHHcCCCEEEEEECCH--HHHHHHHHHHHHcCCCCceEEEECcHHHhHHhhcCCCCEEEECCCC
Confidence            489999999999999999885 4788887652  22221    111221   2334444333 55566789999987554


Q ss_pred             cCccChhcHHHHHHHHH--hcccCCcEEEEeec
Q 046488          398 DGWIDFVLLDFILYDWD--RVLRPGGLLWIDSF  428 (480)
Q Consensus       398 ~h~~d~~~l~~~L~EI~--RVLKPGG~fiI~~f  428 (480)
                      +. ..   ...++..+.  |+|||||++++...
T Consensus       111 ~~-~~---~~~~~~~l~~~~~L~~gG~l~~~~~  139 (177)
T 2esr_A          111 AK-ET---IVATIEALAAKNLLSEQVMVVCETD  139 (177)
T ss_dssp             HH-HH---HHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred             Cc-ch---HHHHHHHHHhCCCcCCCcEEEEEEC
Confidence            21 11   244667776  99999999998643

>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0

Probab=98.91  E-value=2.4e-09  Score=99.23  Aligned_cols=107  Identities=21%  Similarity=0.196  Sum_probs=68.7

Q ss_pred             hHHHhcCCCCCCCCeEEEECCCCcHHHHHHhhC---CCEEEEEecCCCh--hHHHHHHHhCC---CCeeeecc-cCCCCC
Q 046488          314 LIPEVLDIKPGEIRIGLDFSIGTGTFAARMREF---NVTLVSAIINLGA--PFNEMIALRGL---VPLYITIN-QRVPFF  384 (480)
Q Consensus       314 ~I~~vL~l~~g~iR~VLDVGCGtG~fAa~Lae~---gV~Vv~vd~d~~~--~~~~~iA~rgl---ip~~~~~a-e~LPFp  384 (480)
                      ++..++...++  .+|||+|||+|.++..+++.   +..+++++++...  .+...+...+.   +.+..+++ +.++..
T Consensus        55 ~l~~l~~~~~~--~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~  132 (225)
T 3tr6_A           55 LLALLVKLMQA--KKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLAEL  132 (225)
T ss_dssp             HHHHHHHHHTC--SEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHH
T ss_pred             HHHHHHHhhCC--CEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHHHHHh
Confidence            44444444444  38999999999999999986   6788888875211  11122222332   33444443 333322


Q ss_pred             C-----CccchheecccccCccChhcHHHHHHHHHhcccCCcEEEEeec
Q 046488          385 D-----NTLDLIHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDSF  428 (480)
Q Consensus       385 d-----~SFDlV~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~f  428 (480)
                      .     ++||+|++...    ..  ....++.++.|+|||||++++.+.
T Consensus       133 ~~~~~~~~fD~v~~~~~----~~--~~~~~l~~~~~~L~pgG~lv~~~~  175 (225)
T 3tr6_A          133 IHAGQAWQYDLIYIDAD----KA--NTDLYYEESLKLLREGGLIAVDNV  175 (225)
T ss_dssp             HTTTCTTCEEEEEECSC----GG--GHHHHHHHHHHHEEEEEEEEEECS
T ss_pred             hhccCCCCccEEEECCC----HH--HHHHHHHHHHHhcCCCcEEEEeCC
Confidence            2     89999996442    11  125689999999999999999753

>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*

Probab=98.90  E-value=8.6e-10  Score=105.47  Aligned_cols=123  Identities=11%  Similarity=0.016  Sum_probs=77.4

Q ss_pred             hHHHhcCCCCCCCCeEEEECCCCcHHHHHHhhC------CCEEEEEecCCChhHHHHHHHhCCCCeeeecccC---CCCC
Q 046488          314 LIPEVLDIKPGEIRIGLDFSIGTGTFAARMREF------NVTLVSAIINLGAPFNEMIALRGLVPLYITINQR---VPFF  384 (480)
Q Consensus       314 ~I~~vL~l~~g~iR~VLDVGCGtG~fAa~Lae~------gV~Vv~vd~d~~~~~~~~iA~rglip~~~~~ae~---LPFp  384 (480)
                      .+.+++...++  .+|||||||+|..+..|++.      +..+++++++...-...+ .....+.++.+++..   +++.
T Consensus        72 ~l~~~l~~~~~--~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~-~~~~~v~~~~gD~~~~~~l~~~  148 (236)
T 2bm8_A           72 VYHDMLWELRP--RTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPA-SDMENITLHQGDCSDLTTFEHL  148 (236)
T ss_dssp             HHHHHHHHHCC--SEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCG-GGCTTEEEEECCSSCSGGGGGG
T ss_pred             HHHHHHHhcCC--CEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHh-ccCCceEEEECcchhHHHHHhh
Confidence            34445543333  48999999999999999875      678888887642111000 111235556666655   4665


Q ss_pred             CC-ccchheecccccCccChhcHHHHHHHHHh-cccCCcEEEEeeccC--ChhhHHHHHHHHHHc
Q 046488          385 DN-TLDLIHTTRFLDGWIDFVLLDFILYDWDR-VLRPGGLLWIDSFFC--AKEDMNDYLEVFKML  445 (480)
Q Consensus       385 d~-SFDlV~ss~vL~h~~d~~~l~~~L~EI~R-VLKPGG~fiI~~f~~--~~edL~~~~~~l~~l  445 (480)
                      ++ +||+|++...  |. +   ...++.++.| +|||||++++.++..  .....+.+.++++..
T Consensus       149 ~~~~fD~I~~d~~--~~-~---~~~~l~~~~r~~LkpGG~lv~~d~~~~~~~~~~~~~~~~l~~~  207 (236)
T 2bm8_A          149 REMAHPLIFIDNA--HA-N---TFNIMKWAVDHLLEEGDYFIIEDMIPYWYRYAPQLFSEYLGAF  207 (236)
T ss_dssp             SSSCSSEEEEESS--CS-S---HHHHHHHHHHHTCCTTCEEEECSCHHHHHHHCHHHHHHHHHTT
T ss_pred             ccCCCCEEEECCc--hH-h---HHHHHHHHHHhhCCCCCEEEEEeCcccccccCHHHHHHHHHhC
Confidence            54 7999997654  31 2   2568999998 999999999975311  011112455666665

>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46

Probab=98.89  E-value=9.2e-10  Score=96.78  Aligned_cols=95  Identities=12%  Similarity=0.033  Sum_probs=63.3

Q ss_pred             CeEEEECCCCcHHHHHHhhCCCEEEEEecCCChhHHH----HHHHhC-CCCeeeecccC-CCC---CCCccchheecccc
Q 046488          327 RIGLDFSIGTGTFAARMREFNVTLVSAIINLGAPFNE----MIALRG-LVPLYITINQR-VPF---FDNTLDLIHTTRFL  397 (480)
Q Consensus       327 R~VLDVGCGtG~fAa~Lae~gV~Vv~vd~d~~~~~~~----~iA~rg-lip~~~~~ae~-LPF---pd~SFDlV~ss~vL  397 (480)
                      .+|||+|||+|.++..+++++..+++++++.  .+..    .+...+ .+.+..+++.. ++.   .+++||+|++...+
T Consensus        43 ~~vLD~GcG~G~~~~~l~~~~~~v~~vD~~~--~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~i~~~~~~  120 (171)
T 1ws6_A           43 GRFLDPFAGSGAVGLEAASEGWEAVLVEKDP--EAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFMAPPY  120 (171)
T ss_dssp             CEEEEETCSSCHHHHHHHHTTCEEEEECCCH--HHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEECCCT
T ss_pred             CeEEEeCCCcCHHHHHHHHCCCeEEEEeCCH--HHHHHHHHHHHHcCCceEEEeccHHHHHHhhhccCCceEEEEECCCC
Confidence            4899999999999999999888888887652  2222    222233 23444444333 332   23489999998765


Q ss_pred             cCccChhcHHHHHHHHH--hcccCCcEEEEeec
Q 046488          398 DGWIDFVLLDFILYDWD--RVLRPGGLLWIDSF  428 (480)
Q Consensus       398 ~h~~d~~~l~~~L~EI~--RVLKPGG~fiI~~f  428 (480)
                      +  ...   ..++.++.  |+|||||++++...
T Consensus       121 ~--~~~---~~~~~~~~~~~~L~~gG~~~~~~~  148 (171)
T 1ws6_A          121 A--MDL---AALFGELLASGLVEAGGLYVLQHP  148 (171)
T ss_dssp             T--SCT---THHHHHHHHHTCEEEEEEEEEEEE
T ss_pred             c--hhH---HHHHHHHHhhcccCCCcEEEEEeC
Confidence            4  222   23666666  99999999988653

>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}

Probab=98.89  E-value=7.1e-09  Score=101.29  Aligned_cols=119  Identities=7%  Similarity=-0.009  Sum_probs=74.8

Q ss_pred             CeEEEECCCCcHHHHHHhhCCC-EEEEEec-CCChhHHHHH---H------HhC-------CCCeee-eccc---CCCC-
Q 046488          327 RIGLDFSIGTGTFAARMREFNV-TLVSAII-NLGAPFNEMI---A------LRG-------LVPLYI-TINQ---RVPF-  383 (480)
Q Consensus       327 R~VLDVGCGtG~fAa~Lae~gV-~Vv~vd~-d~~~~~~~~i---A------~rg-------lip~~~-~~ae---~LPF-  383 (480)
                      .+|||+|||+|.++..++..|. .++++++ +.  .+...+   +      ..+       .+.+.. .+..   .++. 
T Consensus        81 ~~vLDlG~G~G~~~~~~a~~~~~~v~~~D~s~~--~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  158 (281)
T 3bzb_A           81 KTVCELGAGAGLVSIVAFLAGADQVVATDYPDP--EILNSLESNIREHTANSCSSETVKRASPKVVPYRWGDSPDSLQRC  158 (281)
T ss_dssp             CEEEETTCTTSHHHHHHHHTTCSEEEEEECSCH--HHHHHHHHHHHTTCC----------CCCEEEECCTTSCTHHHHHH
T ss_pred             CeEEEecccccHHHHHHHHcCCCEEEEEeCCCH--HHHHHHHHHHHHhhhhhcccccCCCCCeEEEEecCCCccHHHHhh
Confidence            4899999999999999998876 7888887 42  222211   1      111       122221 1221   1211 


Q ss_pred             -CCCccchheecccccCccChhcHHHHHHHHHhccc---C--CcEEEEe-eccCC--hhhHHHHHHHHHHcC-ceee
Q 046488          384 -FDNTLDLIHTTRFLDGWIDFVLLDFILYDWDRVLR---P--GGLLWID-SFFCA--KEDMNDYLEVFKMLK-YKKH  450 (480)
Q Consensus       384 -pd~SFDlV~ss~vL~h~~d~~~l~~~L~EI~RVLK---P--GG~fiI~-~f~~~--~edL~~~~~~l~~lG-fkkl  450 (480)
                       ++++||+|+++.+++|..+.   ..++.++.|+||   |  ||.+++. .....  .+....+.+.++..| |+..
T Consensus       159 ~~~~~fD~Ii~~dvl~~~~~~---~~ll~~l~~~Lk~~~p~~gG~l~v~~~~~~~~~~~~~~~~~~~l~~~G~f~v~  232 (281)
T 3bzb_A          159 TGLQRFQVVLLADLLSFHQAH---DALLRSVKMLLALPANDPTAVALVTFTHHRPHLAERDLAFFRLVNADGALIAE  232 (281)
T ss_dssp             HSCSSBSEEEEESCCSCGGGH---HHHHHHHHHHBCCTTTCTTCEEEEEECC--------CTHHHHHHHHSTTEEEE
T ss_pred             ccCCCCCEEEEeCcccChHHH---HHHHHHHHHHhcccCCCCCCEEEEEEEeeecccchhHHHHHHHHHhcCCEEEE
Confidence             46899999999988775544   569999999999   9  9987664 11111  111234566788889 8654

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=98.89  E-value=2.5e-09  Score=109.64  Aligned_cols=100  Identities=11%  Similarity=-0.017  Sum_probs=67.3

Q ss_pred             CeEEEECCCCcHHHHHHhhC--CCEEEEEecCCChh--HHHHHHHhCC-----CCeeeecccCCCCCCCccchheecccc
Q 046488          327 RIGLDFSIGTGTFAARMREF--NVTLVSAIINLGAP--FNEMIALRGL-----VPLYITINQRVPFFDNTLDLIHTTRFL  397 (480)
Q Consensus       327 R~VLDVGCGtG~fAa~Lae~--gV~Vv~vd~d~~~~--~~~~iA~rgl-----ip~~~~~ae~LPFpd~SFDlV~ss~vL  397 (480)
                      .+|||+|||+|.++..++++  +..+++++++....  +...+...+.     +.+..+++.. ++++++||+|++.-.+
T Consensus       224 ~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~-~~~~~~fD~Ii~nppf  302 (375)
T 4dcm_A          224 GEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALS-GVEPFRFNAVLCNPPF  302 (375)
T ss_dssp             SEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTTT-TCCTTCEEEEEECCCC
T ss_pred             CeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechhhc-cCCCCCeeEEEECCCc
Confidence            58999999999999999987  67888888763111  1112222231     2224454444 6778999999998777


Q ss_pred             cCc--cChhcHHHHHHHHHhcccCCcEEEEee
Q 046488          398 DGW--IDFVLLDFILYDWDRVLRPGGLLWIDS  427 (480)
Q Consensus       398 ~h~--~d~~~l~~~L~EI~RVLKPGG~fiI~~  427 (480)
                      ++.  ........++.++.|+|||||.+++..
T Consensus       303 h~~~~~~~~~~~~~l~~~~~~LkpgG~l~iv~  334 (375)
T 4dcm_A          303 HQQHALTDNVAWEMFHHARRCLKINGELYIVA  334 (375)
T ss_dssp             -------CCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ccCcccCHHHHHHHHHHHHHhCCCCcEEEEEE
Confidence            642  222222468999999999999999864

>2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A*

Probab=98.89  E-value=1.3e-08  Score=101.74  Aligned_cols=132  Identities=15%  Similarity=0.092  Sum_probs=85.4

Q ss_pred             CCCCCCCCeEEEECC------CCcHHHHHHhhC---CCEEEEEecCCChhHHHHHHHhCCCCe-eeecccCCCCCCCccc
Q 046488          320 DIKPGEIRIGLDFSI------GTGTFAARMREF---NVTLVSAIINLGAPFNEMIALRGLVPL-YITINQRVPFFDNTLD  389 (480)
Q Consensus       320 ~l~~g~iR~VLDVGC------GtG~fAa~Lae~---gV~Vv~vd~d~~~~~~~~iA~rglip~-~~~~ae~LPFpd~SFD  389 (480)
                      .++++  .+|||+||      |+|+  ..++++   +..++++|++..      +   ..+.+ +.+++..++++ ++||
T Consensus        60 ~l~~g--~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis~~------v---~~v~~~i~gD~~~~~~~-~~fD  125 (290)
T 2xyq_A           60 AVPYN--MRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDF------V---SDADSTLIGDCATVHTA-NKWD  125 (290)
T ss_dssp             CCCTT--CEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCC------B---CSSSEEEESCGGGCCCS-SCEE
T ss_pred             CCCCC--CEEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECCCC------C---CCCEEEEECccccCCcc-Cccc
Confidence            35555  38999999      4476  333332   468889887643      1   24667 77887777765 7899


Q ss_pred             hheecccccC---c-----cChhcHHHHHHHHHhcccCCcEEEEeeccCChhhHHHHHHHHHHcCceeeEEEEeeccCCC
Q 046488          390 LIHTTRFLDG---W-----IDFVLLDFILYDWDRVLRPGGLLWIDSFFCAKEDMNDYLEVFKMLKYKKHKWVVVPKRDKD  461 (480)
Q Consensus       390 lV~ss~vL~h---~-----~d~~~l~~~L~EI~RVLKPGG~fiI~~f~~~~edL~~~~~~l~~lGfkkl~W~~~~k~d~~  461 (480)
                      +|++......   +     .....+..++.++.|+|||||+|++..+.....  +.+.+.++..||..+... ..+.  .
T Consensus       126 ~Vvsn~~~~~~g~~~~d~~~~~~l~~~~l~~a~r~LkpGG~~v~~~~~~~~~--~~l~~~l~~~GF~~v~~~-asr~--~  200 (290)
T 2xyq_A          126 LIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEHSWN--ADLYKLMGHFSWWTAFVT-NVNA--S  200 (290)
T ss_dssp             EEEECCCCCC---CCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSSSCC--HHHHHHHTTEEEEEEEEE-GGGT--T
T ss_pred             EEEEcCCccccccccccccchHHHHHHHHHHHHHhcCCCcEEEEEEeccCCH--HHHHHHHHHcCCcEEEEE-EcCC--C
Confidence            9998643211   1     011223468999999999999999976654332  356678888888876654 2222  2


Q ss_pred             CcceeEEEE
Q 046488          462 DREVFFSAV  470 (480)
Q Consensus       462 ~~E~~lsav  470 (480)
                      ..|.|+.+.
T Consensus       201 s~e~~lv~~  209 (290)
T 2xyq_A          201 SSEAFLIGA  209 (290)
T ss_dssp             SSCEEEEEE
T ss_pred             chheEEecC
Confidence            367776544

>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13

Probab=98.88  E-value=7.8e-09  Score=102.89  Aligned_cols=113  Identities=14%  Similarity=0.150  Sum_probs=69.0

Q ss_pred             HhcCCCCCCCCeEEEECCCCcHHHHHHhhC-C--CEEEEEecCCChhHHH----HHHHh-------------CCCCeeee
Q 046488          317 EVLDIKPGEIRIGLDFSIGTGTFAARMREF-N--VTLVSAIINLGAPFNE----MIALR-------------GLVPLYIT  376 (480)
Q Consensus       317 ~vL~l~~g~iR~VLDVGCGtG~fAa~Lae~-g--V~Vv~vd~d~~~~~~~----~iA~r-------------glip~~~~  376 (480)
                      ..+.+.++.  +|||+|||+|.++..+++. |  ..+++++++.  .+..    .++..             ..+.+..+
T Consensus        99 ~~l~~~~g~--~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~--~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~~  174 (336)
T 2b25_A           99 SMMDINPGD--TVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRK--DHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHK  174 (336)
T ss_dssp             HHHTCCTTC--EEEEECCTTSHHHHHHHHHHCTTCEEEEEESSH--HHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEES
T ss_pred             HhcCCCCCC--EEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCH--HHHHHHHHHHHHhhcccccccccccCCceEEEEC
Confidence            445666664  8999999999999999886 4  6788888652  2222    22211             12344555


Q ss_pred             cccCC--CCCCCccchheecccccCccChhcHHHHHHHHHhcccCCcEEEEeeccCChhhHHHHHHHHH
Q 046488          377 INQRV--PFFDNTLDLIHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDSFFCAKEDMNDYLEVFK  443 (480)
Q Consensus       377 ~ae~L--PFpd~SFDlV~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~f~~~~edL~~~~~~l~  443 (480)
                      ++..+  ++++++||+|++..     .++.   .++.++.|+|||||++++...  ..+++..+.+.++
T Consensus       175 d~~~~~~~~~~~~fD~V~~~~-----~~~~---~~l~~~~~~LkpgG~lv~~~~--~~~~~~~~~~~l~  233 (336)
T 2b25_A          175 DISGATEDIKSLTFDAVALDM-----LNPH---VTLPVFYPHLKHGGVCAVYVV--NITQVIELLDGIR  233 (336)
T ss_dssp             CTTCCC-------EEEEEECS-----SSTT---TTHHHHGGGEEEEEEEEEEES--SHHHHHHHHHHHH
T ss_pred             ChHHcccccCCCCeeEEEECC-----CCHH---HHHHHHHHhcCCCcEEEEEeC--CHHHHHHHHHHHH
Confidence            55554  67788999999743     2222   279999999999999987533  2334444444444

>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*

Probab=98.87  E-value=2.2e-09  Score=99.74  Aligned_cols=94  Identities=17%  Similarity=0.155  Sum_probs=65.6

Q ss_pred             CCCCCCCeEEEECCCCcHHHHHHhhC-C--CEEEEEecCCChhHHH----HHHHhC-------CCCeeeecccCCCCCCC
Q 046488          321 IKPGEIRIGLDFSIGTGTFAARMREF-N--VTLVSAIINLGAPFNE----MIALRG-------LVPLYITINQRVPFFDN  386 (480)
Q Consensus       321 l~~g~iR~VLDVGCGtG~fAa~Lae~-g--V~Vv~vd~d~~~~~~~----~iA~rg-------lip~~~~~ae~LPFpd~  386 (480)
                      +.++  .+|||+|||+|.++..+++. +  ..+++++++.  .+..    .+...+       .+.+..++....+..++
T Consensus        75 ~~~~--~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~--~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~  150 (226)
T 1i1n_A           75 LHEG--AKALDVGSGSGILTACFARMVGCTGKVIGIDHIK--ELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAEEA  150 (226)
T ss_dssp             SCTT--CEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCH--HHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGGGC
T ss_pred             CCCC--CEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCH--HHHHHHHHHHHhhcccccCCCcEEEEECCcccCcccCC
Confidence            4444  48999999999999999876 3  5788887652  2222    222212       23444555555666688


Q ss_pred             ccchheecccccCccChhcHHHHHHHHHhcccCCcEEEEee
Q 046488          387 TLDLIHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDS  427 (480)
Q Consensus       387 SFDlV~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~  427 (480)
                      +||+|++...+.+         ++.++.|+|||||++++..
T Consensus       151 ~fD~i~~~~~~~~---------~~~~~~~~LkpgG~lv~~~  182 (226)
T 1i1n_A          151 PYDAIHVGAAAPV---------VPQALIDQLKPGGRLILPV  182 (226)
T ss_dssp             CEEEEEECSBBSS---------CCHHHHHTEEEEEEEEEEE
T ss_pred             CcCEEEECCchHH---------HHHHHHHhcCCCcEEEEEE
Confidence            9999998877643         3568899999999998863

>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}

Probab=98.87  E-value=1.6e-08  Score=105.63  Aligned_cols=157  Identities=20%  Similarity=0.256  Sum_probs=94.7

Q ss_pred             hhhHHHhcCCCCCCCCeEEEECCCCcHHHHHHhhC--C-CEEEEEecCCChhHHH----HHHHhCC--CCeeeecccCCC
Q 046488          312 DFLIPEVLDIKPGEIRIGLDFSIGTGTFAARMREF--N-VTLVSAIINLGAPFNE----MIALRGL--VPLYITINQRVP  382 (480)
Q Consensus       312 d~~I~~vL~l~~g~iR~VLDVGCGtG~fAa~Lae~--g-V~Vv~vd~d~~~~~~~----~iA~rgl--ip~~~~~ae~LP  382 (480)
                      ..++..+++..++.  +|||+|||+|..+..+++.  + ..+++++++.  .+..    .+...|.  +.+..+++..++
T Consensus       248 s~l~~~~l~~~~g~--~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~--~~l~~~~~~~~~~g~~~v~~~~~D~~~~~  323 (450)
T 2yxl_A          248 SAVASIVLDPKPGE--TVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDK--MRMKRLKDFVKRMGIKIVKPLVKDARKAP  323 (450)
T ss_dssp             HHHHHHHHCCCTTC--EEEESSCTTCHHHHHHHHHTTTCSEEEEECSCH--HHHHHHHHHHHHTTCCSEEEECSCTTCCS
T ss_pred             hHHHHHhcCCCCcC--EEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCH--HHHHHHHHHHHHcCCCcEEEEEcChhhcc
Confidence            34555677777664  8999999999999999874  3 5788877652  2222    2222233  223345556665


Q ss_pred             --CCCCccchhee------cccccCccCh------hcH-------HHHHHHHHhcccCCcEEEEeeccCCh-hhHHHHHH
Q 046488          383 --FFDNTLDLIHT------TRFLDGWIDF------VLL-------DFILYDWDRVLRPGGLLWIDSFFCAK-EDMNDYLE  440 (480)
Q Consensus       383 --Fpd~SFDlV~s------s~vL~h~~d~------~~l-------~~~L~EI~RVLKPGG~fiI~~f~~~~-edL~~~~~  440 (480)
                        +++++||+|++      ..++.+.++.      ..+       ..++.++.++|||||+++++...-.. +..+.+..
T Consensus       324 ~~~~~~~fD~Vl~D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy~tcs~~~~ene~~v~~  403 (450)
T 2yxl_A          324 EIIGEEVADKVLLDAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYTTCSIFKEENEKNIRW  403 (450)
T ss_dssp             SSSCSSCEEEEEEECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCCCGGGTHHHHHH
T ss_pred             hhhccCCCCEEEEcCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhHHHHHHH
Confidence              66689999995      2233322221      111       45899999999999999987543322 23334455


Q ss_pred             HHHHc-CceeeE-------------EEEeeccCCCCcceeEEEEEEeC
Q 046488          441 VFKML-KYKKHK-------------WVVVPKRDKDDREVFFSAVLEKP  474 (480)
Q Consensus       441 ~l~~l-Gfkkl~-------------W~~~~k~d~~~~E~~lsav~qKP  474 (480)
                      +++.. +|+...             ..+.+..  ...+.|+.|+++|.
T Consensus       404 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~--~~~dGff~a~l~k~  449 (450)
T 2yxl_A          404 FLNVHPEFKLVPLKSPYDPGFLEGTMRAWPHR--HSTIGFFYALLEKS  449 (450)
T ss_dssp             HHHHCSSCEECCCCSSSEECSSTTCEEECHHH--HSSCCEEEEEEECC
T ss_pred             HHHhCCCCEEeecccccccccCCCeEEECCCC--CCCCceEEEEEEEC
Confidence            66664 565332             1111111  23578899999883

>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A

Probab=98.87  E-value=2.7e-08  Score=103.08  Aligned_cols=159  Identities=16%  Similarity=0.086  Sum_probs=95.2

Q ss_pred             hhhHHHhcCCCCCCCCeEEEECCCCcHHHHHHhhCC--CEEEEEecCCChh--HHHHHHHhCC-CCeeeecccCCC--CC
Q 046488          312 DFLIPEVLDIKPGEIRIGLDFSIGTGTFAARMREFN--VTLVSAIINLGAP--FNEMIALRGL-VPLYITINQRVP--FF  384 (480)
Q Consensus       312 d~~I~~vL~l~~g~iR~VLDVGCGtG~fAa~Lae~g--V~Vv~vd~d~~~~--~~~~iA~rgl-ip~~~~~ae~LP--Fp  384 (480)
                      ...+..+++..++.  +|||+|||+|..+..+++..  ..+++++++...-  ....+...|. +.+..+++..++  ++
T Consensus       235 s~~~~~~l~~~~g~--~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~~~~~~g~~~~~~~~D~~~~~~~~~  312 (429)
T 1sqg_A          235 AQGCMTWLAPQNGE--HILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQWCG  312 (429)
T ss_dssp             HHTHHHHHCCCTTC--EEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCTHHHHT
T ss_pred             HHHHHHHcCCCCcC--eEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHHcCCCeEEEeCchhhchhhcc
Confidence            33455677766664  89999999999999999863  5788888764321  2222222232 333445566665  66


Q ss_pred             CCccchheec------ccccCccCh------hcH-------HHHHHHHHhcccCCcEEEEeeccCC-hhhHHHHHHHHHH
Q 046488          385 DNTLDLIHTT------RFLDGWIDF------VLL-------DFILYDWDRVLRPGGLLWIDSFFCA-KEDMNDYLEVFKM  444 (480)
Q Consensus       385 d~SFDlV~ss------~vL~h~~d~------~~l-------~~~L~EI~RVLKPGG~fiI~~f~~~-~edL~~~~~~l~~  444 (480)
                      +++||+|++.      .++.+.++.      ..+       ..++.++.++|||||+++++...-. .+..+.+...++.
T Consensus       313 ~~~fD~Vl~D~Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvystcs~~~~ene~~v~~~l~~  392 (429)
T 1sqg_A          313 EQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVLPEENSLQIKAFLQR  392 (429)
T ss_dssp             TCCEEEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCCCGGGTHHHHHHHHHH
T ss_pred             cCCCCEEEEeCCCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCChhhHHHHHHHHHHh
Confidence            7899999852      233322221      001       3689999999999999998753222 2223334455555


Q ss_pred             c-CceeeE--------EEEeeccCCCCcceeEEEEEEeC
Q 046488          445 L-KYKKHK--------WVVVPKRDKDDREVFFSAVLEKP  474 (480)
Q Consensus       445 l-Gfkkl~--------W~~~~k~d~~~~E~~lsav~qKP  474 (480)
                      . +|+.+.        +...+..  ...+.|+.|+++|.
T Consensus       393 ~~~~~~~~~~~~~~~~~~~~P~~--~~~dGff~a~l~k~  429 (429)
T 1sqg_A          393 TADAELCETGTPEQPGKQNLPGA--EEGDGFFYAKLIKK  429 (429)
T ss_dssp             CTTCEECSSBCSSSBSEEECCCT--TSCCSEEEEEEEC-
T ss_pred             CCCCEEeCCCCCCCCeEEECCCC--CCCCceEEEEEEEC
Confidence            3 354322        2222322  23577999999984

>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}

Probab=98.87  E-value=1.6e-09  Score=101.48  Aligned_cols=105  Identities=19%  Similarity=0.206  Sum_probs=70.7

Q ss_pred             hHHHhcCCCCCCCCeEEEECCCCcHHHHHHhhC--CCEEEEEecCCChhHHH----HHHHhCC---CCeeeecccC-CCC
Q 046488          314 LIPEVLDIKPGEIRIGLDFSIGTGTFAARMREF--NVTLVSAIINLGAPFNE----MIALRGL---VPLYITINQR-VPF  383 (480)
Q Consensus       314 ~I~~vL~l~~g~iR~VLDVGCGtG~fAa~Lae~--gV~Vv~vd~d~~~~~~~----~iA~rgl---ip~~~~~ae~-LPF  383 (480)
                      ++..++...++  .+|||+|||+|.++..+++.  +..+++++++.  .+..    .+...+.   +.+..+++.. +|.
T Consensus        45 ~l~~~~~~~~~--~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~--~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~  120 (233)
T 2gpy_A           45 SLLHLLKMAAP--ARILEIGTAIGYSAIRMAQALPEATIVSIERDE--RRYEEAHKHVKALGLESRIELLFGDALQLGEK  120 (233)
T ss_dssp             HHHHHHHHHCC--SEEEEECCTTSHHHHHHHHHCTTCEEEEECCCH--HHHHHHHHHHHHTTCTTTEEEECSCGGGSHHH
T ss_pred             HHHHHHhccCC--CEEEEecCCCcHHHHHHHHHCCCCEEEEEECCH--HHHHHHHHHHHHcCCCCcEEEEECCHHHHHHh
Confidence            44455554444  48999999999999999986  57888887652  2222    2222232   3334444333 354


Q ss_pred             C--CCccchheecccccCccChhcHHHHHHHHHhcccCCcEEEEeec
Q 046488          384 F--DNTLDLIHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDSF  428 (480)
Q Consensus       384 p--d~SFDlV~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~f  428 (480)
                      .  +++||+|++.....   +   ...++.++.++|||||++++.++
T Consensus       121 ~~~~~~fD~I~~~~~~~---~---~~~~l~~~~~~L~pgG~lv~~~~  161 (233)
T 2gpy_A          121 LELYPLFDVLFIDAAKG---Q---YRRFFDMYSPMVRPGGLILSDNV  161 (233)
T ss_dssp             HTTSCCEEEEEEEGGGS---C---HHHHHHHHGGGEEEEEEEEEETT
T ss_pred             cccCCCccEEEECCCHH---H---HHHHHHHHHHHcCCCeEEEEEcC
Confidence            4  68999999876543   2   25689999999999999999754

>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*

Probab=98.85  E-value=2.6e-09  Score=100.66  Aligned_cols=97  Identities=23%  Similarity=0.178  Sum_probs=65.9

Q ss_pred             HhcCCCCCCCCeEEEECCCCcHHHHHHhhCC-CEEEEEecCCChhHHH----HHHHhCC--CCeeeecccCCCCCCCc-c
Q 046488          317 EVLDIKPGEIRIGLDFSIGTGTFAARMREFN-VTLVSAIINLGAPFNE----MIALRGL--VPLYITINQRVPFFDNT-L  388 (480)
Q Consensus       317 ~vL~l~~g~iR~VLDVGCGtG~fAa~Lae~g-V~Vv~vd~d~~~~~~~----~iA~rgl--ip~~~~~ae~LPFpd~S-F  388 (480)
                      +.+.+.++.  +|||+|||+|.++..+++.+ ..+++++++.  .+..    ..+..+.  +.+..++. ..+++++. |
T Consensus        85 ~~l~~~~~~--~vLdiG~G~G~~~~~la~~~~~~v~~vD~~~--~~~~~a~~~~~~~~~~~v~~~~~d~-~~~~~~~~~f  159 (235)
T 1jg1_A           85 EIANLKPGM--NILEVGTGSGWNAALISEIVKTDVYTIERIP--ELVEFAKRNLERAGVKNVHVILGDG-SKGFPPKAPY  159 (235)
T ss_dssp             HHHTCCTTC--CEEEECCTTSHHHHHHHHHHCSCEEEEESCH--HHHHHHHHHHHHTTCCSEEEEESCG-GGCCGGGCCE
T ss_pred             HhcCCCCCC--EEEEEeCCcCHHHHHHHHHhCCEEEEEeCCH--HHHHHHHHHHHHcCCCCcEEEECCc-ccCCCCCCCc
Confidence            445565553  79999999999999999874 6788887652  2222    2222232  22333443 45666655 9


Q ss_pred             chheecccccCccChhcHHHHHHHHHhcccCCcEEEEee
Q 046488          389 DLIHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDS  427 (480)
Q Consensus       389 DlV~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~  427 (480)
                      |+|++..+++++.         .++.++|||||++++..
T Consensus       160 D~Ii~~~~~~~~~---------~~~~~~L~pgG~lvi~~  189 (235)
T 1jg1_A          160 DVIIVTAGAPKIP---------EPLIEQLKIGGKLIIPV  189 (235)
T ss_dssp             EEEEECSBBSSCC---------HHHHHTEEEEEEEEEEE
T ss_pred             cEEEECCcHHHHH---------HHHHHhcCCCcEEEEEE
Confidence            9999988876543         37889999999998863

>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}

Probab=98.84  E-value=2.4e-09  Score=107.54  Aligned_cols=99  Identities=16%  Similarity=0.193  Sum_probs=66.3

Q ss_pred             CeEEEECCCCcHHHHHHhhCC--CEEEEEecCCCh--hHHHHHHHhCC-CCeeeecccCCCCCCCccchheecccccCcc
Q 046488          327 RIGLDFSIGTGTFAARMREFN--VTLVSAIINLGA--PFNEMIALRGL-VPLYITINQRVPFFDNTLDLIHTTRFLDGWI  401 (480)
Q Consensus       327 R~VLDVGCGtG~fAa~Lae~g--V~Vv~vd~d~~~--~~~~~iA~rgl-ip~~~~~ae~LPFpd~SFDlV~ss~vL~h~~  401 (480)
                      .+|||+|||+|.++..+++++  ..+++++++...  .+...+...+. ..+..++.  +++.+++||+|+++..+++..
T Consensus       198 ~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~d~--~~~~~~~fD~Iv~~~~~~~g~  275 (343)
T 2pjd_A          198 GKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGVEGEVFASNV--FSEVKGRFDMIISNPPFHDGM  275 (343)
T ss_dssp             SBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHHHHHHTTCCCEEEECST--TTTCCSCEEEEEECCCCCSSS
T ss_pred             CeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCEEEEccc--cccccCCeeEEEECCCcccCc
Confidence            379999999999999998874  467777765211  11112222222 12223333  345588999999998876421


Q ss_pred             --ChhcHHHHHHHHHhcccCCcEEEEee
Q 046488          402 --DFVLLDFILYDWDRVLRPGGLLWIDS  427 (480)
Q Consensus       402 --d~~~l~~~L~EI~RVLKPGG~fiI~~  427 (480)
                        .......++.++.|+|||||.+++..
T Consensus       276 ~~~~~~~~~~l~~~~~~LkpgG~l~i~~  303 (343)
T 2pjd_A          276 QTSLDAAQTLIRGAVRHLNSGGELRIVA  303 (343)
T ss_dssp             HHHHHHHHHHHHHHGGGEEEEEEEEEEE
T ss_pred             cCCHHHHHHHHHHHHHhCCCCcEEEEEE
Confidence              12223679999999999999999864

>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}

Probab=98.84  E-value=3e-09  Score=98.16  Aligned_cols=92  Identities=16%  Similarity=0.042  Sum_probs=63.8

Q ss_pred             CeEEEECCCCcHHHHHHhhC---CCEEEEEecCCChhHHH----HHHHhCC---CCeeeecc-cCCCCCCCccchheecc
Q 046488          327 RIGLDFSIGTGTFAARMREF---NVTLVSAIINLGAPFNE----MIALRGL---VPLYITIN-QRVPFFDNTLDLIHTTR  395 (480)
Q Consensus       327 R~VLDVGCGtG~fAa~Lae~---gV~Vv~vd~d~~~~~~~----~iA~rgl---ip~~~~~a-e~LPFpd~SFDlV~ss~  395 (480)
                      .+|||+|||+|.++..+++.   +..+++++++.  .+..    .+...+.   +.+..+++ +.+|..++ ||+|++..
T Consensus        58 ~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~--~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~-fD~v~~~~  134 (210)
T 3c3p_A           58 QLVVVPGDGLGCASWWFARAISISSRVVMIDPDR--DNVEHARRMLHDNGLIDRVELQVGDPLGIAAGQRD-IDILFMDC  134 (210)
T ss_dssp             SEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCH--HHHHHHHHHHHHHSGGGGEEEEESCHHHHHTTCCS-EEEEEEET
T ss_pred             CEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCH--HHHHHHHHHHHHCCCCceEEEEEecHHHHhccCCC-CCEEEEcC
Confidence            48999999999999999876   56888888652  2222    2222232   33445553 33466567 99999863


Q ss_pred             cccCccChhcHHHHHHHHHhcccCCcEEEEee
Q 046488          396 FLDGWIDFVLLDFILYDWDRVLRPGGLLWIDS  427 (480)
Q Consensus       396 vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~  427 (480)
                      .   ..+.   ..++.++.|+|||||++++.+
T Consensus       135 ~---~~~~---~~~l~~~~~~LkpgG~lv~~~  160 (210)
T 3c3p_A          135 D---VFNG---ADVLERMNRCLAKNALLIAVN  160 (210)
T ss_dssp             T---TSCH---HHHHHHHGGGEEEEEEEEEES
T ss_pred             C---hhhh---HHHHHHHHHhcCCCeEEEEEC
Confidence            2   1222   568999999999999999875

>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46

Probab=98.83  E-value=3.4e-09  Score=98.32  Aligned_cols=95  Identities=8%  Similarity=0.026  Sum_probs=64.7

Q ss_pred             CeEEEECCCCcHHHHHHhhCCC-EEEEEecCCChhHHH----HHHHhCC--CCeeeecccC-CCCCCCccchheeccccc
Q 046488          327 RIGLDFSIGTGTFAARMREFNV-TLVSAIINLGAPFNE----MIALRGL--VPLYITINQR-VPFFDNTLDLIHTTRFLD  398 (480)
Q Consensus       327 R~VLDVGCGtG~fAa~Lae~gV-~Vv~vd~d~~~~~~~----~iA~rgl--ip~~~~~ae~-LPFpd~SFDlV~ss~vL~  398 (480)
                      .+|||+|||+|.++..++.++. .+++++.+.  .+..    .+...+.  +.+..+++.. +++.+++||+|++...++
T Consensus        56 ~~vLDlgcG~G~~~~~l~~~~~~~V~~vD~s~--~~l~~a~~~~~~~~~~~v~~~~~D~~~~~~~~~~~fD~V~~~~p~~  133 (202)
T 2fpo_A           56 AQCLDCFAGSGALGLEALSRYAAGATLIEMDR--AVSQQLIKNLATLKAGNARVVNSNAMSFLAQKGTPHNIVFVDPPFR  133 (202)
T ss_dssp             CEEEETTCTTCHHHHHHHHTTCSEEEEECSCH--HHHHHHHHHHHHTTCCSEEEECSCHHHHHSSCCCCEEEEEECCSSS
T ss_pred             CeEEEeCCCcCHHHHHHHhcCCCEEEEEECCH--HHHHHHHHHHHHcCCCcEEEEECCHHHHHhhcCCCCCEEEECCCCC
Confidence            4899999999999998877764 788887652  3322    2222232  3344455444 677788999999876543


Q ss_pred             CccChhcHHHHHHHHHh--cccCCcEEEEee
Q 046488          399 GWIDFVLLDFILYDWDR--VLRPGGLLWIDS  427 (480)
Q Consensus       399 h~~d~~~l~~~L~EI~R--VLKPGG~fiI~~  427 (480)
                       ....   ..++.++.+  +|||||++++..
T Consensus       134 -~~~~---~~~l~~l~~~~~L~pgG~l~i~~  160 (202)
T 2fpo_A          134 -RGLL---EETINLLEDNGWLADEALIYVES  160 (202)
T ss_dssp             -TTTH---HHHHHHHHHTTCEEEEEEEEEEE
T ss_pred             -CCcH---HHHHHHHHhcCccCCCcEEEEEE
Confidence             2222   457888855  699999998864

>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}

Probab=98.83  E-value=3.5e-09  Score=98.49  Aligned_cols=96  Identities=18%  Similarity=0.036  Sum_probs=66.1

Q ss_pred             CCCCCCCeEEEECCCCcHHHHHHhhCC-------CEEEEEecCCCh--hHHHHHHHhC-------CCCeeeecccCCC--
Q 046488          321 IKPGEIRIGLDFSIGTGTFAARMREFN-------VTLVSAIINLGA--PFNEMIALRG-------LVPLYITINQRVP--  382 (480)
Q Consensus       321 l~~g~iR~VLDVGCGtG~fAa~Lae~g-------V~Vv~vd~d~~~--~~~~~iA~rg-------lip~~~~~ae~LP--  382 (480)
                      +.++  .+|||+|||+|.++..+++..       ..+++++++...  .+...++..+       .+.+..++....+  
T Consensus        78 ~~~~--~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~  155 (227)
T 2pbf_A           78 LKPG--SRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNIYQVNEE  155 (227)
T ss_dssp             SCTT--CEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCGGGCCHH
T ss_pred             CCCC--CEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECChHhcccc
Confidence            5555  489999999999999998863       378888865211  1112222223       2344455555554  


Q ss_pred             --CCCCccchheecccccCccChhcHHHHHHHHHhcccCCcEEEEee
Q 046488          383 --FFDNTLDLIHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDS  427 (480)
Q Consensus       383 --Fpd~SFDlV~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~  427 (480)
                        +.+++||+|++...+++         ++.++.++|||||++++..
T Consensus       156 ~~~~~~~fD~I~~~~~~~~---------~~~~~~~~LkpgG~lv~~~  193 (227)
T 2pbf_A          156 EKKELGLFDAIHVGASASE---------LPEILVDLLAENGKLIIPI  193 (227)
T ss_dssp             HHHHHCCEEEEEECSBBSS---------CCHHHHHHEEEEEEEEEEE
T ss_pred             cCccCCCcCEEEECCchHH---------HHHHHHHhcCCCcEEEEEE
Confidence              56789999999877754         3578899999999998863

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=98.81  E-value=9.9e-10  Score=118.02  Aligned_cols=98  Identities=12%  Similarity=-0.009  Sum_probs=73.5

Q ss_pred             CeEEEECCCCcHHHHHHhhCCCEEEEEecCCChhHHH---HHHH-hCCC--CeeeecccCC--CCCCCccchheeccccc
Q 046488          327 RIGLDFSIGTGTFAARMREFNVTLVSAIINLGAPFNE---MIAL-RGLV--PLYITINQRV--PFFDNTLDLIHTTRFLD  398 (480)
Q Consensus       327 R~VLDVGCGtG~fAa~Lae~gV~Vv~vd~d~~~~~~~---~iA~-rgli--p~~~~~ae~L--PFpd~SFDlV~ss~vL~  398 (480)
                      .+|||||||+|.++..|+++|..|+++|+..  .+..   ..|. .+..  ....+.++.+  ++.+++||+|+|+.+|+
T Consensus        68 ~~vLDvGCG~G~~~~~la~~ga~V~giD~~~--~~i~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~e~~e  145 (569)
T 4azs_A           68 LNVLDLGCAQGFFSLSLASKGATIVGIDFQQ--ENINVCRALAEENPDFAAEFRVGRIEEVIAALEEGEFDLAIGLSVFH  145 (569)
T ss_dssp             CEEEEETCTTSHHHHHHHHTTCEEEEEESCH--HHHHHHHHHHHTSTTSEEEEEECCHHHHHHHCCTTSCSEEEEESCHH
T ss_pred             CeEEEECCCCcHHHHHHHhCCCEEEEECCCH--HHHHHHHHHHHhcCCCceEEEECCHHHHhhhccCCCccEEEECcchh
Confidence            4799999999999999999999999998752  2221   1222 3433  3445667777  67889999999999999


Q ss_pred             CccChhcHHHHHHHHHhcccCCcEEEEee
Q 046488          399 GWIDFVLLDFILYDWDRVLRPGGLLWIDS  427 (480)
Q Consensus       399 h~~d~~~l~~~L~EI~RVLKPGG~fiI~~  427 (480)
                      |+.++..+ ..+..+.+.|+++|..++..
T Consensus       146 hv~~~~~~-~~~~~~~~tl~~~~~~~~~~  173 (569)
T 4azs_A          146 HIVHLHGI-DEVKRLLSRLADVTQAVILE  173 (569)
T ss_dssp             HHHHHHCH-HHHHHHHHHHHHHSSEEEEE
T ss_pred             cCCCHHHH-HHHHHHHHHhccccceeeEE
Confidence            99876542 34566888899998877654

>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A

Probab=98.81  E-value=5.2e-09  Score=97.48  Aligned_cols=93  Identities=12%  Similarity=0.079  Sum_probs=61.3

Q ss_pred             CeEEEECCCCcHHHHHHhhC-C--CEEEEEecCCChhHHHHH---HHh-CCCCeeeecccCC---CCCCCccchheeccc
Q 046488          327 RIGLDFSIGTGTFAARMREF-N--VTLVSAIINLGAPFNEMI---ALR-GLVPLYITINQRV---PFFDNTLDLIHTTRF  396 (480)
Q Consensus       327 R~VLDVGCGtG~fAa~Lae~-g--V~Vv~vd~d~~~~~~~~i---A~r-glip~~~~~ae~L---PFpd~SFDlV~ss~v  396 (480)
                      .+|||+|||+|.++..++++ |  ..+++++.+.  .+...+   +.+ ..+.+..+++...   +..+++||+|++...
T Consensus        75 ~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~--~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~D~v~~~~~  152 (227)
T 1g8a_A           75 KSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSP--RVLRELVPIVEERRNIVPILGDATKPEEYRALVPKVDVIFEDVA  152 (227)
T ss_dssp             CEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCH--HHHHHHHHHHSSCTTEEEEECCTTCGGGGTTTCCCEEEEEECCC
T ss_pred             CEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCH--HHHHHHHHHHhccCCCEEEEccCCCcchhhcccCCceEEEECCC
Confidence            48999999999999999876 2  5788887652  222221   211 2334445554442   223468999997543


Q ss_pred             ccCccChhcHHHHHHHHHhcccCCcEEEEe
Q 046488          397 LDGWIDFVLLDFILYDWDRVLRPGGLLWID  426 (480)
Q Consensus       397 L~h~~d~~~l~~~L~EI~RVLKPGG~fiI~  426 (480)
                         ..+.  ...++.++.|+|||||++++.
T Consensus       153 ---~~~~--~~~~l~~~~~~LkpgG~l~~~  177 (227)
T 1g8a_A          153 ---QPTQ--AKILIDNAEVYLKRGGYGMIA  177 (227)
T ss_dssp             ---STTH--HHHHHHHHHHHEEEEEEEEEE
T ss_pred             ---CHhH--HHHHHHHHHHhcCCCCEEEEE
Confidence               1222  134599999999999999886

>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32

Probab=98.81  E-value=1.7e-08  Score=92.28  Aligned_cols=107  Identities=12%  Similarity=0.007  Sum_probs=70.2

Q ss_pred             CeEEEECCCCcHHHHHHhhCCC-EEEEEecCCChhHHHHHHHhC--CCCeeeecccCCCCCCCccchheecccccCccCh
Q 046488          327 RIGLDFSIGTGTFAARMREFNV-TLVSAIINLGAPFNEMIALRG--LVPLYITINQRVPFFDNTLDLIHTTRFLDGWIDF  403 (480)
Q Consensus       327 R~VLDVGCGtG~fAa~Lae~gV-~Vv~vd~d~~~~~~~~iA~rg--lip~~~~~ae~LPFpd~SFDlV~ss~vL~h~~d~  403 (480)
                      .+|||+|||+|.++..+++.+. .+++++++   +.....+.+.  .+.+..+++..+|   ++||+|++...++++.+.
T Consensus        53 ~~vlD~gcG~G~~~~~l~~~~~~~v~~vD~~---~~~~~~a~~~~~~~~~~~~d~~~~~---~~~D~v~~~~p~~~~~~~  126 (200)
T 1ne2_A           53 RSVIDAGTGNGILACGSYLLGAESVTAFDID---PDAIETAKRNCGGVNFMVADVSEIS---GKYDTWIMNPPFGSVVKH  126 (200)
T ss_dssp             SEEEEETCTTCHHHHHHHHTTBSEEEEEESC---HHHHHHHHHHCTTSEEEECCGGGCC---CCEEEEEECCCC------
T ss_pred             CEEEEEeCCccHHHHHHHHcCCCEEEEEECC---HHHHHHHHHhcCCCEEEECcHHHCC---CCeeEEEECCCchhccCc
Confidence            4899999999999999998865 58888875   2333333333  3556666666665   799999999888777543


Q ss_pred             hcHHHHHHHHHhcccCCcEEEEeeccCChhhHHHHHHHHHHcC
Q 046488          404 VLLDFILYDWDRVLRPGGLLWIDSFFCAKEDMNDYLEVFKMLK  446 (480)
Q Consensus       404 ~~l~~~L~EI~RVLKPGG~fiI~~f~~~~edL~~~~~~l~~lG  446 (480)
                      .. ..++.++.|+|  |+.+++.    .......+.+.++..|
T Consensus       127 ~~-~~~l~~~~~~~--g~~~~~~----~~~~~~~~~~~~~~~g  162 (200)
T 1ne2_A          127 SD-RAFIDKAFETS--MWIYSIG----NAKARDFLRREFSARG  162 (200)
T ss_dssp             -C-HHHHHHHHHHE--EEEEEEE----EGGGHHHHHHHHHHHE
T ss_pred             hh-HHHHHHHHHhc--CcEEEEE----cCchHHHHHHHHHHCC
Confidence            22 46899999999  5544332    2233455566677766

>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}

Probab=98.81  E-value=1.1e-08  Score=98.03  Aligned_cols=107  Identities=14%  Similarity=0.083  Sum_probs=71.6

Q ss_pred             hHHHhcCCCCCCCCeEEEECCCCcHHHHHHhhC---CCEEEEEecCC--ChhHHHHHHHhCC---CCeeeecccC-CCCC
Q 046488          314 LIPEVLDIKPGEIRIGLDFSIGTGTFAARMREF---NVTLVSAIINL--GAPFNEMIALRGL---VPLYITINQR-VPFF  384 (480)
Q Consensus       314 ~I~~vL~l~~g~iR~VLDVGCGtG~fAa~Lae~---gV~Vv~vd~d~--~~~~~~~iA~rgl---ip~~~~~ae~-LPFp  384 (480)
                      ++..++.+.++  ++|||||||+|..+..|++.   +..+++++++.  ...+...+...+.   +.+..+++.. ++..
T Consensus        51 ~l~~l~~~~~~--~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~~  128 (242)
T 3r3h_A           51 FMQMLIRLTRA--KKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPALDTLHSL  128 (242)
T ss_dssp             HHHHHHHHHTC--SEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEESCHHHHHHHH
T ss_pred             HHHHHHhhcCc--CEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHH
Confidence            44444443333  48999999999999999984   56788888753  2234444544443   3445555433 3432


Q ss_pred             -----CCccchheecccccCccChhcHHHHHHHHHhcccCCcEEEEeec
Q 046488          385 -----DNTLDLIHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDSF  428 (480)
Q Consensus       385 -----d~SFDlV~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~f  428 (480)
                           +++||+|++....    .  ....++.++.|+|||||++++++.
T Consensus       129 ~~~~~~~~fD~V~~d~~~----~--~~~~~l~~~~~~LkpGG~lv~d~~  171 (242)
T 3r3h_A          129 LNEGGEHQFDFIFIDADK----T--NYLNYYELALKLVTPKGLIAIDNI  171 (242)
T ss_dssp             HHHHCSSCEEEEEEESCG----G--GHHHHHHHHHHHEEEEEEEEEECS
T ss_pred             hhccCCCCEeEEEEcCCh----H--HhHHHHHHHHHhcCCCeEEEEECC
Confidence                 5899999976431    1  124689999999999999999753

>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}

Probab=98.80  E-value=4.3e-09  Score=111.49  Aligned_cols=98  Identities=13%  Similarity=0.121  Sum_probs=69.2

Q ss_pred             CeEEEECCCCcHHHHHHhhCC-CEEEEEecCCChh-HHHHHHHhCC---CCeeeecccCCCCCCCccchheecccccCcc
Q 046488          327 RIGLDFSIGTGTFAARMREFN-VTLVSAIINLGAP-FNEMIALRGL---VPLYITINQRVPFFDNTLDLIHTTRFLDGWI  401 (480)
Q Consensus       327 R~VLDVGCGtG~fAa~Lae~g-V~Vv~vd~d~~~~-~~~~iA~rgl---ip~~~~~ae~LPFpd~SFDlV~ss~vL~h~~  401 (480)
                      .+|||||||+|.++..+++.+ ..+++++++.... +...++..+.   +.+..++.+.++++ +.||+|++...++++.
T Consensus       160 ~~VLDiGcGtG~la~~la~~~~~~V~gvD~s~~l~~A~~~~~~~gl~~~v~~~~~d~~~~~~~-~~fD~Ivs~~~~~~~~  238 (480)
T 3b3j_A          160 KIVLDVGCGSGILSFFAAQAGARKIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVEEVSLP-EQVDIIISEPMGYMLF  238 (480)
T ss_dssp             CEEEEESCSTTHHHHHHHHTTCSEEEEEECHHHHHHHHHHHHHTTCTTTEEEEESCTTTCCCS-SCEEEEECCCCHHHHT
T ss_pred             CEEEEecCcccHHHHHHHHcCCCEEEEEEcHHHHHHHHHHHHHcCCCCcEEEEECchhhCccC-CCeEEEEEeCchHhcC
Confidence            489999999999999999875 4788888652101 1112222232   34556667777765 5899999987777775


Q ss_pred             ChhcHHHHHHHHHhcccCCcEEEEe
Q 046488          402 DFVLLDFILYDWDRVLRPGGLLWID  426 (480)
Q Consensus       402 d~~~l~~~L~EI~RVLKPGG~fiI~  426 (480)
                      .... ...+.++.|+|||||++++.
T Consensus       239 ~e~~-~~~l~~~~~~LkpgG~li~~  262 (480)
T 3b3j_A          239 NERM-LESYLHAKKYLKPSGNMFPT  262 (480)
T ss_dssp             CHHH-HHHHHHGGGGEEEEEEEESC
T ss_pred             cHHH-HHHHHHHHHhcCCCCEEEEE
Confidence            4433 45778999999999999854

>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A

Probab=98.80  E-value=2.5e-08  Score=97.03  Aligned_cols=112  Identities=16%  Similarity=0.114  Sum_probs=71.1

Q ss_pred             hhhHHHhcCCCCCCCCeEEEECCCCcHHHHHHhhC--C-CEEEEEecCCChhHHH----HHHHhCC--CCeeeecccCCC
Q 046488          312 DFLIPEVLDIKPGEIRIGLDFSIGTGTFAARMREF--N-VTLVSAIINLGAPFNE----MIALRGL--VPLYITINQRVP  382 (480)
Q Consensus       312 d~~I~~vL~l~~g~iR~VLDVGCGtG~fAa~Lae~--g-V~Vv~vd~d~~~~~~~----~iA~rgl--ip~~~~~ae~LP  382 (480)
                      ..++..+++..++.  +|||+|||+|.++..+++.  + ..+++++.+.  .+..    .+...+.  +.+..+++..++
T Consensus        72 s~l~~~~l~~~~g~--~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~--~~l~~~~~~~~~~g~~~v~~~~~D~~~~~  147 (274)
T 3ajd_A           72 SMIPPIVLNPREDD--FILDMCAAPGGKTTHLAQLMKNKGTIVAVEISK--TRTKALKSNINRMGVLNTIIINADMRKYK  147 (274)
T ss_dssp             GGHHHHHHCCCTTC--EEEETTCTTCHHHHHHHHHTTTCSEEEEEESCH--HHHHHHHHHHHHTTCCSEEEEESCHHHHH
T ss_pred             HHHHHHHhCCCCcC--EEEEeCCCccHHHHHHHHHcCCCCEEEEECCCH--HHHHHHHHHHHHhCCCcEEEEeCChHhcc
Confidence            33455677776664  8999999999999999873  4 6788888652  2222    2222232  233445555555


Q ss_pred             C----CCCccchheecc------cccC---ccC------hhcHHHHHHHHHhcccCCcEEEEee
Q 046488          383 F----FDNTLDLIHTTR------FLDG---WID------FVLLDFILYDWDRVLRPGGLLWIDS  427 (480)
Q Consensus       383 F----pd~SFDlV~ss~------vL~h---~~d------~~~l~~~L~EI~RVLKPGG~fiI~~  427 (480)
                      .    .+++||+|++.-      ++.+   |..      ......++.++.++|||||+++++.
T Consensus       148 ~~~~~~~~~fD~Vl~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~st  211 (274)
T 3ajd_A          148 DYLLKNEIFFDKILLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVYST  211 (274)
T ss_dssp             HHHHHTTCCEEEEEEEECCC------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             hhhhhccccCCEEEEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEE
Confidence            4    377999999751      1110   100      0112568999999999999999875

>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7

Probab=98.78  E-value=9e-09  Score=96.26  Aligned_cols=93  Identities=17%  Similarity=0.200  Sum_probs=63.8

Q ss_pred             CCCCCCCeEEEECCCCcHHHHHHhhC-C-------CEEEEEecCCChhHHH----HHHHh-------CCCCeeeecccCC
Q 046488          321 IKPGEIRIGLDFSIGTGTFAARMREF-N-------VTLVSAIINLGAPFNE----MIALR-------GLVPLYITINQRV  381 (480)
Q Consensus       321 l~~g~iR~VLDVGCGtG~fAa~Lae~-g-------V~Vv~vd~d~~~~~~~----~iA~r-------glip~~~~~ae~L  381 (480)
                      +.++  .+|||+|||+|.++..+++. +       ..+++++++.  .+..    .++..       ..+.+..++... 
T Consensus        82 ~~~~--~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~--~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~-  156 (227)
T 1r18_A           82 LKPG--ARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQA--ELVRRSKANLNTDDRSMLDSGQLLIVEGDGRK-  156 (227)
T ss_dssp             CCTT--CEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCH--HHHHHHHHHHHHHHHHHHHHTSEEEEESCGGG-
T ss_pred             CCCC--CEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCH--HHHHHHHHHHHhcCccccCCCceEEEECCccc-
Confidence            4444  38999999999999999874 4       3788887652  2222    22221       134444555444 


Q ss_pred             CCCC-CccchheecccccCccChhcHHHHHHHHHhcccCCcEEEEee
Q 046488          382 PFFD-NTLDLIHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDS  427 (480)
Q Consensus       382 PFpd-~SFDlV~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~  427 (480)
                      ++++ ++||+|++...++++         +.++.++|||||++++..
T Consensus       157 ~~~~~~~fD~I~~~~~~~~~---------~~~~~~~LkpgG~lvi~~  194 (227)
T 1r18_A          157 GYPPNAPYNAIHVGAAAPDT---------PTELINQLASGGRLIVPV  194 (227)
T ss_dssp             CCGGGCSEEEEEECSCBSSC---------CHHHHHTEEEEEEEEEEE
T ss_pred             CCCcCCCccEEEECCchHHH---------HHHHHHHhcCCCEEEEEE
Confidence            5555 899999998887653         368899999999998853

>3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A*

Probab=98.78  E-value=8e-09  Score=102.84  Aligned_cols=105  Identities=14%  Similarity=-0.022  Sum_probs=67.3

Q ss_pred             CCCeEEEECCCC--cHHHHHHhhC---CCEEEEEecCCChhHHHHHHH--hC----CCCeeeecccCC------CCCCCc
Q 046488          325 EIRIGLDFSIGT--GTFAARMREF---NVTLVSAIINLGAPFNEMIAL--RG----LVPLYITINQRV------PFFDNT  387 (480)
Q Consensus       325 ~iR~VLDVGCGt--G~fAa~Lae~---gV~Vv~vd~d~~~~~~~~iA~--rg----lip~~~~~ae~L------PFpd~S  387 (480)
                      .++.|||||||+  +.+...++.+   +..|+++|.+  ..++.....  .+    .+.++.++...+      |..+++
T Consensus        78 g~~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~s--p~mLa~Ar~~l~~~~~~~~~~v~aD~~~~~~~l~~~~~~~~  155 (277)
T 3giw_A           78 GIRQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDND--PIVLTLSQGLLASTPEGRTAYVEADMLDPASILDAPELRDT  155 (277)
T ss_dssp             CCCEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECC--HHHHHTTHHHHCCCSSSEEEEEECCTTCHHHHHTCHHHHTT
T ss_pred             CCCEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCC--hHHHHHHHHHhccCCCCcEEEEEecccChhhhhcccccccc
Confidence            468999999997  3344444332   6788888754  234332211  11    133445555543      222566


Q ss_pred             cc-----hheecccccCccChhcHHHHHHHHHhcccCCcEEEEeeccCC
Q 046488          388 LD-----LIHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDSFFCA  431 (480)
Q Consensus       388 FD-----lV~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~f~~~  431 (480)
                      ||     .|+++.+|||+.+......++.++.++|+|||+|+++++...
T Consensus       156 ~D~~~p~av~~~avLH~l~d~~~p~~~l~~l~~~L~PGG~Lvls~~~~d  204 (277)
T 3giw_A          156 LDLTRPVALTVIAIVHFVLDEDDAVGIVRRLLEPLPSGSYLAMSIGTAE  204 (277)
T ss_dssp             CCTTSCCEEEEESCGGGSCGGGCHHHHHHHHHTTSCTTCEEEEEEECCT
T ss_pred             cCcCCcchHHhhhhHhcCCchhhHHHHHHHHHHhCCCCcEEEEEeccCC
Confidence            77     477888888877754335799999999999999999876543

>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}

Probab=98.78  E-value=1.4e-08  Score=104.88  Aligned_cols=99  Identities=19%  Similarity=0.180  Sum_probs=68.6

Q ss_pred             CeEEEECCCCcHHHHHHhhCCC-EEEEEecCCChhHHHHHHH-hCC---CCeeeecccCCCCCCCccchheecccccCcc
Q 046488          327 RIGLDFSIGTGTFAARMREFNV-TLVSAIINLGAPFNEMIAL-RGL---VPLYITINQRVPFFDNTLDLIHTTRFLDGWI  401 (480)
Q Consensus       327 R~VLDVGCGtG~fAa~Lae~gV-~Vv~vd~d~~~~~~~~iA~-rgl---ip~~~~~ae~LPFpd~SFDlV~ss~vL~h~~  401 (480)
                      ++|||||||||.++..+++.|. .|++++.+.......++++ .+.   +.++.+..+.+.++ +.||+|+|-..-..+.
T Consensus        85 k~VLDvG~GtGiLs~~Aa~aGA~~V~ave~s~~~~~a~~~~~~n~~~~~i~~i~~~~~~~~lp-e~~DvivsE~~~~~l~  163 (376)
T 4hc4_A           85 KTVLDVGAGTGILSIFCAQAGARRVYAVEASAIWQQAREVVRFNGLEDRVHVLPGPVETVELP-EQVDAIVSEWMGYGLL  163 (376)
T ss_dssp             CEEEEETCTTSHHHHHHHHTTCSEEEEEECSTTHHHHHHHHHHTTCTTTEEEEESCTTTCCCS-SCEEEEECCCCBTTBT
T ss_pred             CEEEEeCCCccHHHHHHHHhCCCEEEEEeChHHHHHHHHHHHHcCCCceEEEEeeeeeeecCC-ccccEEEeeccccccc
Confidence            4899999999999998888875 6888886643333333333 333   34556667888776 6799999843322222


Q ss_pred             ChhcHHHHHHHHHhcccCCcEEEEe
Q 046488          402 DFVLLDFILYDWDRVLRPGGLLWID  426 (480)
Q Consensus       402 d~~~l~~~L~EI~RVLKPGG~fiI~  426 (480)
                      ....+..++...+|.|||||.++-.
T Consensus       164 ~e~~l~~~l~a~~r~Lkp~G~~iP~  188 (376)
T 4hc4_A          164 HESMLSSVLHARTKWLKEGGLLLPA  188 (376)
T ss_dssp             TTCSHHHHHHHHHHHEEEEEEEESC
T ss_pred             ccchhhhHHHHHHhhCCCCceECCc
Confidence            2233567899999999999998753

>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32

Probab=98.78  E-value=2.1e-07  Score=84.97  Aligned_cols=112  Identities=8%  Similarity=0.022  Sum_probs=74.1

Q ss_pred             CeEEEECCCCcHHHHHHhhCCC-EEEEEecCCChhHHHHHHHh-----C-CCCeeeecccCCCCCCCccchheecccccC
Q 046488          327 RIGLDFSIGTGTFAARMREFNV-TLVSAIINLGAPFNEMIALR-----G-LVPLYITINQRVPFFDNTLDLIHTTRFLDG  399 (480)
Q Consensus       327 R~VLDVGCGtG~fAa~Lae~gV-~Vv~vd~d~~~~~~~~iA~r-----g-lip~~~~~ae~LPFpd~SFDlV~ss~vL~h  399 (480)
                      .+|||+|||+|.++..+++.+. .+++++++.  .+.. .+.+     + .+.+..+++..+|   ++||+|++.-.++.
T Consensus        51 ~~vlD~g~G~G~~~~~l~~~~~~~v~~vD~~~--~~~~-~a~~~~~~~~~~~~~~~~d~~~~~---~~~D~v~~~~p~~~  124 (207)
T 1wy7_A           51 KVVADLGAGTGVLSYGALLLGAKEVICVEVDK--EAVD-VLIENLGEFKGKFKVFIGDVSEFN---SRVDIVIMNPPFGS  124 (207)
T ss_dssp             CEEEEETCTTCHHHHHHHHTTCSEEEEEESCH--HHHH-HHHHHTGGGTTSEEEEESCGGGCC---CCCSEEEECCCCSS
T ss_pred             CEEEEeeCCCCHHHHHHHHcCCCEEEEEECCH--HHHH-HHHHHHHHcCCCEEEEECchHHcC---CCCCEEEEcCCCcc
Confidence            4899999999999999998865 588888652  2322 2222     2 2334455566654   58999999877665


Q ss_pred             ccChhcHHHHHHHHHhcccCCcEEEEeeccCChhhHHHHHHHHHHcCcee
Q 046488          400 WIDFVLLDFILYDWDRVLRPGGLLWIDSFFCAKEDMNDYLEVFKMLKYKK  449 (480)
Q Consensus       400 ~~d~~~l~~~L~EI~RVLKPGG~fiI~~f~~~~edL~~~~~~l~~lGfkk  449 (480)
                      +..... ..++.++.++|  ||.+++ . ....+..+.+...++..||+-
T Consensus       125 ~~~~~~-~~~l~~~~~~l--~~~~~~-~-~~~~~~~~~~~~~l~~~g~~~  169 (207)
T 1wy7_A          125 QRKHAD-RPFLLKAFEIS--DVVYSI-H-LAKPEVRRFIEKFSWEHGFVV  169 (207)
T ss_dssp             SSTTTT-HHHHHHHHHHC--SEEEEE-E-ECCHHHHHHHHHHHHHTTEEE
T ss_pred             ccCCch-HHHHHHHHHhc--CcEEEE-E-eCCcCCHHHHHHHHHHCCCeE
Confidence            543222 56899999999  554433 2 123344455667788889864

>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31

Probab=98.78  E-value=1.2e-08  Score=107.30  Aligned_cols=107  Identities=16%  Similarity=0.052  Sum_probs=67.6

Q ss_pred             HhcCCCCCCCCeEEEECCCCcHHHHHHhhC-C-CEEEEEecCCCh--hH-------HHHHHHhC----CCCeeeeccc--
Q 046488          317 EVLDIKPGEIRIGLDFSIGTGTFAARMREF-N-VTLVSAIINLGA--PF-------NEMIALRG----LVPLYITINQ--  379 (480)
Q Consensus       317 ~vL~l~~g~iR~VLDVGCGtG~fAa~Lae~-g-V~Vv~vd~d~~~--~~-------~~~iA~rg----lip~~~~~ae--  379 (480)
                      +.+.+.++  .+|||+|||+|.++..+++. + ..+++++++...  .+       ...+...|    .+.+..+...  
T Consensus       236 ~~l~l~~g--~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~~i~gD~~~~  313 (433)
T 1u2z_A          236 QQCQLKKG--DTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSFVD  313 (433)
T ss_dssp             HHTTCCTT--CEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSCSTT
T ss_pred             HhcCCCCC--CEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCceEEEEcCcccc
Confidence            34455555  48999999999999999985 4 468888865311  11       11122223    1222333221  


Q ss_pred             CCCC--CCCccchheecccccCccChhcHHHHHHHHHhcccCCcEEEEeecc
Q 046488          380 RVPF--FDNTLDLIHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDSFF  429 (480)
Q Consensus       380 ~LPF--pd~SFDlV~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~f~  429 (480)
                      ..+|  .+++||+|+++.++ +..+   +..+|.|+.|+|||||++++...+
T Consensus       314 ~~~~~~~~~~FDvIvvn~~l-~~~d---~~~~L~el~r~LKpGG~lVi~d~f  361 (433)
T 1u2z_A          314 NNRVAELIPQCDVILVNNFL-FDED---LNKKVEKILQTAKVGCKIISLKSL  361 (433)
T ss_dssp             CHHHHHHGGGCSEEEECCTT-CCHH---HHHHHHHHHTTCCTTCEEEESSCS
T ss_pred             ccccccccCCCCEEEEeCcc-cccc---HHHHHHHHHHhCCCCeEEEEeecc
Confidence            1123  35799999987655 2222   256899999999999999987533

>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E

Probab=98.77  E-value=1e-08  Score=97.61  Aligned_cols=97  Identities=15%  Similarity=0.222  Sum_probs=63.3

Q ss_pred             CeEEEECCCCcHHHHHHhhCC--CEEEEEecCCChhHHH----HHHHh--------CC--CCeeeecccC-CC--CCCCc
Q 046488          327 RIGLDFSIGTGTFAARMREFN--VTLVSAIINLGAPFNE----MIALR--------GL--VPLYITINQR-VP--FFDNT  387 (480)
Q Consensus       327 R~VLDVGCGtG~fAa~Lae~g--V~Vv~vd~d~~~~~~~----~iA~r--------gl--ip~~~~~ae~-LP--Fpd~S  387 (480)
                      .+|||||||+|.++..+++.+  ..+++++++.  .+..    .+...        +.  +.++.+++.. ++  |++++
T Consensus        51 ~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~--~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~l~~~~~~~~  128 (246)
T 2vdv_E           51 VTIADIGCGFGGLMIDLSPAFPEDLILGMEIRV--QVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLPNFFEKGQ  128 (246)
T ss_dssp             EEEEEETCTTSHHHHHHHHHSTTSEEEEEESCH--HHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSCGGGTSCTTC
T ss_pred             CEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCH--HHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHHHHHhccccc
Confidence            489999999999999999874  5788888653  2222    12221        32  3344455444 66  88899


Q ss_pred             cchheecccccCccCh------hcHHHHHHHHHhcccCCcEEEEe
Q 046488          388 LDLIHTTRFLDGWIDF------VLLDFILYDWDRVLRPGGLLWID  426 (480)
Q Consensus       388 FDlV~ss~vL~h~~d~------~~l~~~L~EI~RVLKPGG~fiI~  426 (480)
                      ||.|+.... ..|...      .....++.++.|+|||||+|++.
T Consensus       129 ~d~v~~~~p-~p~~k~~~~~~r~~~~~~l~~~~~~LkpgG~l~~~  172 (246)
T 2vdv_E          129 LSKMFFCFP-DPHFKQRKHKARIITNTLLSEYAYVLKEGGVVYTI  172 (246)
T ss_dssp             EEEEEEESC-CCC------CSSCCCHHHHHHHHHHEEEEEEEEEE
T ss_pred             cCEEEEECC-CcccccchhHHhhccHHHHHHHHHHcCCCCEEEEE
Confidence            999985321 122110      00025899999999999999884

>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}

Probab=98.77  E-value=1.8e-08  Score=95.14  Aligned_cols=106  Identities=15%  Similarity=0.127  Sum_probs=67.9

Q ss_pred             hHHHhcCCCCCCCCeEEEECCCCcHHHHHHhhC---CCEEEEEecCCCh--hHHHHHHHhCC---CCeeeecccC-CC--
Q 046488          314 LIPEVLDIKPGEIRIGLDFSIGTGTFAARMREF---NVTLVSAIINLGA--PFNEMIALRGL---VPLYITINQR-VP--  382 (480)
Q Consensus       314 ~I~~vL~l~~g~iR~VLDVGCGtG~fAa~Lae~---gV~Vv~vd~d~~~--~~~~~iA~rgl---ip~~~~~ae~-LP--  382 (480)
                      ++..++.+.++  .+|||+|||+|.++..+++.   +..+++++.+...  .+...+...+.   +.+..+++.. ++  
T Consensus        51 ~l~~l~~~~~~--~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~  128 (239)
T 2hnk_A           51 FLNILTKISGA--KRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALETLQVL  128 (239)
T ss_dssp             HHHHHHHHHTC--SEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHH
T ss_pred             HHHHHHHhhCc--CEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHHHHHH
Confidence            44445544444  48999999999999999886   5688888865211  11112222232   2333333211 22  


Q ss_pred             ------------CCC--CccchheecccccCccChhcHHHHHHHHHhcccCCcEEEEee
Q 046488          383 ------------FFD--NTLDLIHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDS  427 (480)
Q Consensus       383 ------------Fpd--~SFDlV~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~  427 (480)
                                  |++  ++||+|++.....+      ...++.++.++|||||++++..
T Consensus       129 ~~~~~~~~~~~~f~~~~~~fD~I~~~~~~~~------~~~~l~~~~~~L~pgG~lv~~~  181 (239)
T 2hnk_A          129 IDSKSAPSWASDFAFGPSSIDLFFLDADKEN------YPNYYPLILKLLKPGGLLIADN  181 (239)
T ss_dssp             HHCSSCCGGGTTTCCSTTCEEEEEECSCGGG------HHHHHHHHHHHEEEEEEEEEEC
T ss_pred             HhhcccccccccccCCCCCcCEEEEeCCHHH------HHHHHHHHHHHcCCCeEEEEEc
Confidence                        444  89999998754321      2468999999999999999975

>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*

Probab=98.76  E-value=3.3e-08  Score=104.67  Aligned_cols=158  Identities=17%  Similarity=0.186  Sum_probs=93.7

Q ss_pred             hhhHHHhcCCCCCCCCeEEEECCCCcHHHHHHhhC---CCEEEEEecCCChhHHH----HHHHhCC-CCeeeecccCCC-
Q 046488          312 DFLIPEVLDIKPGEIRIGLDFSIGTGTFAARMREF---NVTLVSAIINLGAPFNE----MIALRGL-VPLYITINQRVP-  382 (480)
Q Consensus       312 d~~I~~vL~l~~g~iR~VLDVGCGtG~fAa~Lae~---gV~Vv~vd~d~~~~~~~----~iA~rgl-ip~~~~~ae~LP-  382 (480)
                      ..++..+++..++.  +|||+|||+|..+..++++   ...+++++++.  .+..    .+...|. +.+..+++..++ 
T Consensus        90 s~l~a~~L~~~~g~--~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~--~~l~~a~~n~~r~G~~v~~~~~Da~~l~~  165 (464)
T 3m6w_A           90 AQAVGVLLDPKPGE--RVLDLAAAPGGKTTHLAARMGGKGLLLANEVDG--KRVRGLLENVERWGAPLAVTQAPPRALAE  165 (464)
T ss_dssp             THHHHHHHCCCTTC--EEEESSCTTCHHHHHHHHHTTTCSEEEEECSCH--HHHHHHHHHHHHHCCCCEEECSCHHHHHH
T ss_pred             HHHHHHhcCcCCCC--EEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCH--HHHHHHHHHHHHcCCeEEEEECCHHHhhh
Confidence            33555677777664  8999999999999999875   24777777652  2222    2222233 233344455555 


Q ss_pred             CCCCccchhee----c--ccccCccCh------h-------cHHHHHHHHHhcccCCcEEEEeecc-CChhhHHHHHHHH
Q 046488          383 FFDNTLDLIHT----T--RFLDGWIDF------V-------LLDFILYDWDRVLRPGGLLWIDSFF-CAKEDMNDYLEVF  442 (480)
Q Consensus       383 Fpd~SFDlV~s----s--~vL~h~~d~------~-------~l~~~L~EI~RVLKPGG~fiI~~f~-~~~edL~~~~~~l  442 (480)
                      +.+++||+|++    +  .++.+.++.      .       ....+|.++.++|||||+++++.-. ...+.-+.+..++
T Consensus       166 ~~~~~FD~Il~D~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvysTCs~~~eEne~vv~~~l  245 (464)
T 3m6w_A          166 AFGTYFHRVLLDAPCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYSTCTFAPEENEGVVAHFL  245 (464)
T ss_dssp             HHCSCEEEEEEECCCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCCCGGGTHHHHHHHH
T ss_pred             hccccCCEEEECCCcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeccCchhcCHHHHHHHH
Confidence            45789999995    1  222221111      0       0146899999999999999986422 2223333444555


Q ss_pred             HHc-CceeeEE------------------------EEeeccCCCCcceeEEEEEEeCC
Q 046488          443 KML-KYKKHKW------------------------VVVPKRDKDDREVFFSAVLEKPP  475 (480)
Q Consensus       443 ~~l-Gfkkl~W------------------------~~~~k~d~~~~E~~lsav~qKP~  475 (480)
                      ++. +|+.+..                        ...+..  ...+.|+.|+++|.-
T Consensus       246 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~P~~--~~~dGfF~A~l~k~~  301 (464)
T 3m6w_A          246 KAHPEFRLEDARLHPLFAPGVPEWGEGNPELLKTARLWPHR--LEGEGHFLARFRKEG  301 (464)
T ss_dssp             HHCTTEEEECCCCSTTSEECCGGGTTTCGGGGGSEEECTTT--SSSSCEEEEEEEECS
T ss_pred             HHCCCcEEEecccccccccCcccccccccccCCeEEECCCC--CCceeEEEEEEEECC
Confidence            554 3443221                        111111  346889999999974

>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}

Probab=98.74  E-value=3.8e-08  Score=103.98  Aligned_cols=161  Identities=18%  Similarity=0.172  Sum_probs=96.1

Q ss_pred             hhhHHHhcCCCCCCCCeEEEECCCCcHHHHHHhhC---CCEEEEEecCCCh--hHHHHHHHhCCCC--eeeecccCCC-C
Q 046488          312 DFLIPEVLDIKPGEIRIGLDFSIGTGTFAARMREF---NVTLVSAIINLGA--PFNEMIALRGLVP--LYITINQRVP-F  383 (480)
Q Consensus       312 d~~I~~vL~l~~g~iR~VLDVGCGtG~fAa~Lae~---gV~Vv~vd~d~~~--~~~~~iA~rglip--~~~~~ae~LP-F  383 (480)
                      ..++..+|+..++.  +|||+|||+|..+..++++   ...+++++++...  .+.+.+.+.|.-.  +..+++..++ +
T Consensus        94 s~l~~~~L~~~~g~--~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g~~nv~v~~~Da~~l~~~  171 (456)
T 3m4x_A           94 AMIVGTAAAAKPGE--KVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGVSNAIVTNHAPAELVPH  171 (456)
T ss_dssp             THHHHHHHCCCTTC--EEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTCSSEEEECCCHHHHHHH
T ss_pred             HHHHHHHcCCCCCC--EEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhhh
Confidence            33556677777765  8999999999999998875   3577787765211  1122233334322  2334444444 3


Q ss_pred             CCCccchheecc------cccC-------ccChh------cHHHHHHHHHhcccCCcEEEEeecc-CChhhHHHHHHHHH
Q 046488          384 FDNTLDLIHTTR------FLDG-------WIDFV------LLDFILYDWDRVLRPGGLLWIDSFF-CAKEDMNDYLEVFK  443 (480)
Q Consensus       384 pd~SFDlV~ss~------vL~h-------~~d~~------~l~~~L~EI~RVLKPGG~fiI~~f~-~~~edL~~~~~~l~  443 (480)
                      .+++||+|++.-      ++..       |....      ....+|.++.++|||||+++++.-. ...+.-+.+..+++
T Consensus       172 ~~~~FD~Il~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~eEne~vv~~~l~  251 (456)
T 3m4x_A          172 FSGFFDRIVVDAPCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLIYSTCTFAPEENEEIISWLVE  251 (456)
T ss_dssp             HTTCEEEEEEECCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEEEESCCCGGGTHHHHHHHHH
T ss_pred             ccccCCEEEECCCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEeecccccCHHHHHHHHH
Confidence            578999999631      2211       11000      0126899999999999999886422 22333344566777


Q ss_pred             HcCceeeEE-----------------------EEeeccCCCCcceeEEEEEEeCCC
Q 046488          444 MLKYKKHKW-----------------------VVVPKRDKDDREVFFSAVLEKPPR  476 (480)
Q Consensus       444 ~lGfkkl~W-----------------------~~~~k~d~~~~E~~lsav~qKP~~  476 (480)
                      +.+|+-+..                       ...+..  ...+.|+.|+++|.-.
T Consensus       252 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~~P~~--~~~dGFF~A~l~k~~~  305 (456)
T 3m4x_A          252 NYPVTIEEIPLTQSVSSGRSEWGSVAGLEKTIRIWPHK--DQGEGHFVAKLTFHGQ  305 (456)
T ss_dssp             HSSEEEECCCCSSCCEECCGGGSSSTTGGGSEEECTTT--SSSSCEEEEEEEECSC
T ss_pred             hCCCEEEeccccccccccccccccccccCCeEEECCCC--CCCcCeEEEEEEECCC
Confidence            766543321                       111111  3468899999999654

>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51

Probab=98.73  E-value=1.6e-08  Score=102.13  Aligned_cols=122  Identities=16%  Similarity=0.044  Sum_probs=74.3

Q ss_pred             CeEEEECCCCcHHHHHHhhCCCEEEEEecCCChhHHH----HHHHhCC----CCeeeecccCCC-C---CCCccchheec
Q 046488          327 RIGLDFSIGTGTFAARMREFNVTLVSAIINLGAPFNE----MIALRGL----VPLYITINQRVP-F---FDNTLDLIHTT  394 (480)
Q Consensus       327 R~VLDVGCGtG~fAa~Lae~gV~Vv~vd~d~~~~~~~----~iA~rgl----ip~~~~~ae~LP-F---pd~SFDlV~ss  394 (480)
                      .+|||+|||+|.++..++..|..+++++++.  .+..    .+...+.    +.++.+++..+. .   .+++||+|++.
T Consensus       155 ~~VLDlgcGtG~~sl~la~~ga~V~~VD~s~--~al~~a~~n~~~~gl~~~~v~~i~~D~~~~l~~~~~~~~~fD~Ii~d  232 (332)
T 2igt_A          155 LKVLNLFGYTGVASLVAAAAGAEVTHVDASK--KAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDIILTD  232 (332)
T ss_dssp             CEEEEETCTTCHHHHHHHHTTCEEEEECSCH--HHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEEEEC
T ss_pred             CcEEEcccccCHHHHHHHHcCCEEEEEECCH--HHHHHHHHHHHHcCCCccceEEEECcHHHHHHHHHhcCCCceEEEEC
Confidence            4899999999999999999888888887652  2222    2233332    334444443322 1   16789999983


Q ss_pred             c---cccC----ccChhcHHHHHHHHHhcccCCcEEEEeeccCCh---hhHHH-HHHHHHHcCceee
Q 046488          395 R---FLDG----WIDFVLLDFILYDWDRVLRPGGLLWIDSFFCAK---EDMND-YLEVFKMLKYKKH  450 (480)
Q Consensus       395 ~---vL~h----~~d~~~l~~~L~EI~RVLKPGG~fiI~~f~~~~---edL~~-~~~~l~~lGfkkl  450 (480)
                      -   ....    +........++.++.++|||||+|++.......   +.+.. +.+.++..|++-.
T Consensus       233 PP~~~~~~~~~~~~~~~~~~~ll~~~~~~LkpgG~lli~~~~~~~~~~~~~~~~l~~a~~~~g~~v~  299 (332)
T 2igt_A          233 PPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTAYSIRASFYSMHELMRETMRGAGGVVA  299 (332)
T ss_dssp             CCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEECCTTSCHHHHHHHHHHHTTTSCSEEE
T ss_pred             CccccCCchHHHHHHHHHHHHHHHHHHHhcCcCcEEEEEECCCCCCCHHHHHHHHHHHHHHcCCeEE
Confidence            2   1110    001112356899999999999998776543332   22222 3345556777543

>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}

Probab=98.72  E-value=3.4e-09  Score=100.90  Aligned_cols=95  Identities=13%  Similarity=0.071  Sum_probs=66.8

Q ss_pred             CeEEEECCCCcHHHHHHhhC--CCEEEEEecCCChhHHH---HHHHhCCCC--eeeecccCCCCCCCccchheecccccC
Q 046488          327 RIGLDFSIGTGTFAARMREF--NVTLVSAIINLGAPFNE---MIALRGLVP--LYITINQRVPFFDNTLDLIHTTRFLDG  399 (480)
Q Consensus       327 R~VLDVGCGtG~fAa~Lae~--gV~Vv~vd~d~~~~~~~---~iA~rglip--~~~~~ae~LPFpd~SFDlV~ss~vL~h  399 (480)
                      .+|||+|||+|.+|..++..  ++.++++|++.  .+.+   ..+.+.++.  +.+.+... ..+.++||+|.+..++|+
T Consensus        51 ~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~--~~leiar~~~~~~g~~~~v~~~d~~~-~~~~~~~DvVLa~k~LHl  127 (200)
T 3fzg_A           51 SSILDFGCGFNPLALYQWNENEKIIYHAYDIDR--AEIAFLSSIIGKLKTTIKYRFLNKES-DVYKGTYDVVFLLKMLPV  127 (200)
T ss_dssp             SEEEEETCTTHHHHHHHHCSSCCCEEEEECSCH--HHHHHHHHHHHHSCCSSEEEEECCHH-HHTTSEEEEEEEETCHHH
T ss_pred             CeEEEecCCCCHHHHHHHhcCCCCEEEEEeCCH--HHHHHHHHHHHhcCCCccEEEecccc-cCCCCCcChhhHhhHHHh
Confidence            48999999999999999776  67888887763  3322   122222332  33333222 246889999999999998


Q ss_pred             ccChhcHHHHHHHHHhcccCCcEEEEee
Q 046488          400 WIDFVLLDFILYDWDRVLRPGGLLWIDS  427 (480)
Q Consensus       400 ~~d~~~l~~~L~EI~RVLKPGG~fiI~~  427 (480)
                      +.+.   +.++..+.+.|||||+|+-..
T Consensus       128 L~~~---~~al~~v~~~L~pggvfISfp  152 (200)
T 3fzg_A          128 LKQQ---DVNILDFLQLFHTQNFVISFP  152 (200)
T ss_dssp             HHHT---TCCHHHHHHTCEEEEEEEEEE
T ss_pred             hhhh---HHHHHHHHHHhCCCCEEEEeC
Confidence            8333   347779999999999987643

>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}

Probab=98.72  E-value=6.3e-09  Score=98.64  Aligned_cols=95  Identities=15%  Similarity=0.131  Sum_probs=63.2

Q ss_pred             CeEEEECCCCcHHHHHHhhC---CCEEEEEecCCCh--hHHHHHHHhCC----CCeeeecc-cCCC-CCCCccchheecc
Q 046488          327 RIGLDFSIGTGTFAARMREF---NVTLVSAIINLGA--PFNEMIALRGL----VPLYITIN-QRVP-FFDNTLDLIHTTR  395 (480)
Q Consensus       327 R~VLDVGCGtG~fAa~Lae~---gV~Vv~vd~d~~~--~~~~~iA~rgl----ip~~~~~a-e~LP-Fpd~SFDlV~ss~  395 (480)
                      .+|||+|||+|..+..|++.   +..+++++++...  .+...+...+.    +.+..+++ +-++ +++++||+|++..
T Consensus        58 ~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~~l~~~~~~~fD~V~~d~  137 (221)
T 3dr5_A           58 TGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDVMSRLANDSYQLVFGQV  137 (221)
T ss_dssp             CEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHGGGSCTTCEEEEEECC
T ss_pred             CCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHHHHHHhcCCCcCeEEEcC
Confidence            38999999999999999874   5688888765311  11122223232    22334443 2333 3478999999754


Q ss_pred             cccCccChhcHHHHHHHHHhcccCCcEEEEee
Q 046488          396 FLDGWIDFVLLDFILYDWDRVLRPGGLLWIDS  427 (480)
Q Consensus       396 vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~  427 (480)
                      ...   +   ...++.++.|+|||||++++++
T Consensus       138 ~~~---~---~~~~l~~~~~~LkpGG~lv~dn  163 (221)
T 3dr5_A          138 SPM---D---LKALVDAAWPLLRRGGALVLAD  163 (221)
T ss_dssp             CTT---T---HHHHHHHHHHHEEEEEEEEETT
T ss_pred             cHH---H---HHHHHHHHHHHcCCCcEEEEeC
Confidence            322   1   2458999999999999999975

>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}

Probab=98.71  E-value=3e-08  Score=99.64  Aligned_cols=127  Identities=17%  Similarity=0.098  Sum_probs=80.8

Q ss_pred             hcCCCCCCCCeEEEECCCCcHHHHHHhhCC---CEEEEEecCCCh--hHHHHHHHhC--CCCeeeecccCCCCCCCccch
Q 046488          318 VLDIKPGEIRIGLDFSIGTGTFAARMREFN---VTLVSAIINLGA--PFNEMIALRG--LVPLYITINQRVPFFDNTLDL  390 (480)
Q Consensus       318 vL~l~~g~iR~VLDVGCGtG~fAa~Lae~g---V~Vv~vd~d~~~--~~~~~iA~rg--lip~~~~~ae~LPFpd~SFDl  390 (480)
                      ++...++  .+|||+|||+|.++..++..+   ..++++|++...  .+...+...+  .+.+..+++..++.+.+.||+
T Consensus       198 ~~~~~~~--~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~~~i~~~~~D~~~~~~~~~~~D~  275 (354)
T 3tma_A          198 LADARPG--MRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGLSWIRFLRADARHLPRFFPEVDR  275 (354)
T ss_dssp             HTTCCTT--CCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTTCTTCEEEECCGGGGGGTCCCCSE
T ss_pred             HhCCCCC--CEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcCCCceEEEeCChhhCccccCCCCE
Confidence            3344444  479999999999999998854   788888876311  1222223334  255666778888888889999


Q ss_pred             heecccccCcc-Ch----hcHHHHHHHHHhcccCCcEEEEeeccCChhhHHHHHHHHHHcCceeeEE
Q 046488          391 IHTTRFLDGWI-DF----VLLDFILYDWDRVLRPGGLLWIDSFFCAKEDMNDYLEVFKMLKYKKHKW  452 (480)
Q Consensus       391 V~ss~vL~h~~-d~----~~l~~~L~EI~RVLKPGG~fiI~~f~~~~edL~~~~~~l~~lGfkkl~W  452 (480)
                      |++.--+.... +.    .....++.++.|+|||||.+++...   ..  ..+.+..+ .||+..+-
T Consensus       276 Ii~npPyg~r~~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~t~---~~--~~~~~~~~-~g~~~~~~  336 (354)
T 3tma_A          276 ILANPPHGLRLGRKEGLFHLYWDFLRGALALLPPGGRVALLTL---RP--ALLKRALP-PGFALRHA  336 (354)
T ss_dssp             EEECCCSCC----CHHHHHHHHHHHHHHHHTSCTTCEEEEEES---CH--HHHHHHCC-TTEEEEEE
T ss_pred             EEECCCCcCccCCcccHHHHHHHHHHHHHHhcCCCcEEEEEeC---CH--HHHHHHhh-cCcEEEEE
Confidence            99953322111 11    1114689999999999999998632   11  11233444 78776543

>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}

Probab=98.70  E-value=3.9e-08  Score=95.90  Aligned_cols=98  Identities=15%  Similarity=0.135  Sum_probs=68.0

Q ss_pred             CCCCCCCeEEEECCCCcHHHHHHhhC--CCEEEEEecCCChhHHH----HHHHhCC--CCeeeecccCCCCCCCccchhe
Q 046488          321 IKPGEIRIGLDFSIGTGTFAARMREF--NVTLVSAIINLGAPFNE----MIALRGL--VPLYITINQRVPFFDNTLDLIH  392 (480)
Q Consensus       321 l~~g~iR~VLDVGCGtG~fAa~Lae~--gV~Vv~vd~d~~~~~~~----~iA~rgl--ip~~~~~ae~LPFpd~SFDlV~  392 (480)
                      +.++  .+|||+|||+|.++..++++  +..+++++++.  .+..    .+...+.  +.++.+++..++. +++||+|+
T Consensus       117 ~~~~--~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~--~av~~a~~n~~~n~l~~~~~~~~d~~~~~~-~~~~D~Vi  191 (272)
T 3a27_A          117 SNEN--EVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNP--TAYHYLCENIKLNKLNNVIPILADNRDVEL-KDVADRVI  191 (272)
T ss_dssp             CCTT--CEEEETTCTTTTTHHHHHHHTCCSEEEEEECCH--HHHHHHHHHHHHTTCSSEEEEESCGGGCCC-TTCEEEEE
T ss_pred             cCCC--CEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCH--HHHHHHHHHHHHcCCCCEEEEECChHHcCc-cCCceEEE
Confidence            4444  48999999999999999987  34788888652  2222    2222332  2344566666654 77999999


Q ss_pred             ecccccCccChhcHHHHHHHHHhcccCCcEEEEeeccC
Q 046488          393 TTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDSFFC  430 (480)
Q Consensus       393 ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~f~~  430 (480)
                      +....    ..   ..++.++.|+|||||++++..+..
T Consensus       192 ~d~p~----~~---~~~l~~~~~~LkpgG~l~~s~~~~  222 (272)
T 3a27_A          192 MGYVH----KT---HKFLDKTFEFLKDRGVIHYHETVA  222 (272)
T ss_dssp             ECCCS----SG---GGGHHHHHHHEEEEEEEEEEEEEE
T ss_pred             ECCcc----cH---HHHHHHHHHHcCCCCEEEEEEcCc
Confidence            76543    22   348999999999999999886654

>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*

Probab=98.69  E-value=1e-08  Score=98.57  Aligned_cols=106  Identities=11%  Similarity=0.035  Sum_probs=69.1

Q ss_pred             hHHHhcCCCCCCCCeEEEECCCCcHHHHHHhhC---CCEEEEEecCCChh--HHHHHHHhCC---CCeeeeccc-CCCC-
Q 046488          314 LIPEVLDIKPGEIRIGLDFSIGTGTFAARMREF---NVTLVSAIINLGAP--FNEMIALRGL---VPLYITINQ-RVPF-  383 (480)
Q Consensus       314 ~I~~vL~l~~g~iR~VLDVGCGtG~fAa~Lae~---gV~Vv~vd~d~~~~--~~~~iA~rgl---ip~~~~~ae-~LPF-  383 (480)
                      ++..++.+.++  ++|||||||+|..+..+++.   +..+++++++....  +...+...+.   +.+..+++. .+|. 
T Consensus        70 ll~~l~~~~~~--~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l  147 (247)
T 1sui_A           70 FLSMLLKLINA--KNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEM  147 (247)
T ss_dssp             HHHHHHHHTTC--CEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHH
T ss_pred             HHHHHHHhhCc--CEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHH
Confidence            44444444333  48999999999999999875   67888888764211  1122223333   334445432 2343 


Q ss_pred             -----CCCccchheecccccCccChhcHHHHHHHHHhcccCCcEEEEee
Q 046488          384 -----FDNTLDLIHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDS  427 (480)
Q Consensus       384 -----pd~SFDlV~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~  427 (480)
                           ++++||+|++....   .+   ...++.++.|+|||||++++++
T Consensus       148 ~~~~~~~~~fD~V~~d~~~---~~---~~~~l~~~~~~LkpGG~lv~d~  190 (247)
T 1sui_A          148 IKDEKNHGSYDFIFVDADK---DN---YLNYHKRLIDLVKVGGVIGYDN  190 (247)
T ss_dssp             HHSGGGTTCBSEEEECSCS---TT---HHHHHHHHHHHBCTTCCEEEEC
T ss_pred             HhccCCCCCEEEEEEcCch---HH---HHHHHHHHHHhCCCCeEEEEec
Confidence                 26899999976432   11   2568999999999999999875

>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}

Probab=98.69  E-value=1.1e-07  Score=100.82  Aligned_cols=159  Identities=18%  Similarity=0.130  Sum_probs=92.4

Q ss_pred             hhhHHHhcCCC--CCCCCeEEEECCCCcHHHHHHhhC---CCEEEEEecCCChhHHH----HHHHhCC--CCeeeecccC
Q 046488          312 DFLIPEVLDIK--PGEIRIGLDFSIGTGTFAARMREF---NVTLVSAIINLGAPFNE----MIALRGL--VPLYITINQR  380 (480)
Q Consensus       312 d~~I~~vL~l~--~g~iR~VLDVGCGtG~fAa~Lae~---gV~Vv~vd~d~~~~~~~----~iA~rgl--ip~~~~~ae~  380 (480)
                      ..++..+|...  ++.  +|||+|||+|..+..|++.   +..+++++++.  .+..    .+...|.  +.+..+++..
T Consensus       104 s~l~~~~L~~~~~~g~--~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~--~~l~~~~~n~~r~g~~nv~~~~~D~~~  179 (479)
T 2frx_A          104 SMLPVAALFADGNAPQ--RVMDVAAAPGSKTTQISARMNNEGAILANEFSA--SRVKVLHANISRCGISNVALTHFDGRV  179 (479)
T ss_dssp             HHHHHHHHTTTTCCCS--EEEESSCTTSHHHHHHHHHTTTCSEEEEECSSH--HHHHHHHHHHHHHTCCSEEEECCCSTT
T ss_pred             HHHHHHHhCcccCCCC--EEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCH--HHHHHHHHHHHHcCCCcEEEEeCCHHH
Confidence            33445566665  554  8999999999999999875   35778877652  2222    2222343  2234455666


Q ss_pred             CCC-CCCccchheec------ccccC-------ccChh------cHHHHHHHHHhcccCCcEEEEeecc-CChhhHHHHH
Q 046488          381 VPF-FDNTLDLIHTT------RFLDG-------WIDFV------LLDFILYDWDRVLRPGGLLWIDSFF-CAKEDMNDYL  439 (480)
Q Consensus       381 LPF-pd~SFDlV~ss------~vL~h-------~~d~~------~l~~~L~EI~RVLKPGG~fiI~~f~-~~~edL~~~~  439 (480)
                      ++. .+++||+|++.      .++.+       |....      ....+|.++.|+|||||+++++... ...++-+.+.
T Consensus       180 ~~~~~~~~fD~Il~D~PcSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~LvysTcs~~~~Ene~vv~  259 (479)
T 2frx_A          180 FGAAVPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYSTCTLNQEENEAVCL  259 (479)
T ss_dssp             HHHHSTTCEEEEEEECCCCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCSSTTTHHHHH
T ss_pred             hhhhccccCCEEEECCCcCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCCEEEEecccCCcccCHHHHH
Confidence            654 57899999972      22222       21110      0135899999999999999987532 1222223334


Q ss_pred             HHHHHcC-ceee-E-----------------EEEeeccCCCCcceeEEEEEEeCCC
Q 046488          440 EVFKMLK-YKKH-K-----------------WVVVPKRDKDDREVFFSAVLEKPPR  476 (480)
Q Consensus       440 ~~l~~lG-fkkl-~-----------------W~~~~k~d~~~~E~~lsav~qKP~~  476 (480)
                      .++++.+ +..+ .                 ..+.+..  ...+.|+.|+++|...
T Consensus       260 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~r~~P~~--~~~dGfF~A~l~k~~~  313 (479)
T 2frx_A          260 WLKETYPDAVEFLPLGDLFPGANKALTEEGFLHVFPQI--YDCEGFFVARLRKTQA  313 (479)
T ss_dssp             HHHHHSTTTEEECCCTTSSTTGGGGBCTTSCEEECTTT--TTSCCEEEEEEEECSC
T ss_pred             HHHHHCCCceecccccccccccccccccCCeEEECCCC--CCcCccEEEEEEEcCC
Confidence            4555543 2111 0                 1111111  2357899999998653

>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}

Probab=98.68  E-value=1.5e-08  Score=95.93  Aligned_cols=95  Identities=18%  Similarity=0.110  Sum_probs=63.8

Q ss_pred             CeEEEECCCCcHHHHHHhhC---CCEEEEEecCCCh--hHHHHHHHhCC---CCeeeecc----cCCCCCC--Cccchhe
Q 046488          327 RIGLDFSIGTGTFAARMREF---NVTLVSAIINLGA--PFNEMIALRGL---VPLYITIN----QRVPFFD--NTLDLIH  392 (480)
Q Consensus       327 R~VLDVGCGtG~fAa~Lae~---gV~Vv~vd~d~~~--~~~~~iA~rgl---ip~~~~~a----e~LPFpd--~SFDlV~  392 (480)
                      ++|||+|||+|.++..+++.   +..+++++++...  .+...+...+.   +.+..+.+    ..+++.+  ++||+|+
T Consensus        74 ~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l~~l~~~~~~~~fD~V~  153 (232)
T 3cbg_A           74 KQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQGKPLPEFDLIF  153 (232)
T ss_dssp             CEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHTSSSCCCEEEEE
T ss_pred             CEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCCcCEEE
Confidence            48999999999999999875   5678888865211  11112222233   33344442    3455555  8999999


Q ss_pred             ecccccCccChhcHHHHHHHHHhcccCCcEEEEee
Q 046488          393 TTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDS  427 (480)
Q Consensus       393 ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~  427 (480)
                      +....    .  ....++.++.|+|||||++++++
T Consensus       154 ~d~~~----~--~~~~~l~~~~~~LkpgG~lv~~~  182 (232)
T 3cbg_A          154 IDADK----R--NYPRYYEIGLNLLRRGGLMVIDN  182 (232)
T ss_dssp             ECSCG----G--GHHHHHHHHHHTEEEEEEEEEEC
T ss_pred             ECCCH----H--HHHHHHHHHHHHcCCCeEEEEeC
Confidence            76431    1  12568999999999999999975

>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*

Probab=98.68  E-value=1.3e-07  Score=96.33  Aligned_cols=137  Identities=10%  Similarity=-0.016  Sum_probs=84.7

Q ss_pred             CeEEEECCCCcHHHHHHhhCCC--EEEEEecCCCh--hHHHHHHHhCC---CCeeeecccCCCCCCCccchheecccccC
Q 046488          327 RIGLDFSIGTGTFAARMREFNV--TLVSAIINLGA--PFNEMIALRGL---VPLYITINQRVPFFDNTLDLIHTTRFLDG  399 (480)
Q Consensus       327 R~VLDVGCGtG~fAa~Lae~gV--~Vv~vd~d~~~--~~~~~iA~rgl---ip~~~~~ae~LPFpd~SFDlV~ss~vL~h  399 (480)
                      .+|||+|||+|.++..++..+.  .+++++++...  .+...+...|.   +.+..+++..+|+++++||+|+++-.+..
T Consensus       219 ~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~~~l~~A~~n~~~~gl~~~i~~~~~D~~~~~~~~~~fD~Ii~npPyg~  298 (373)
T 3tm4_A          219 GSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQGDATQLSQYVDSVDFAISNLPYGL  298 (373)
T ss_dssp             CCEEETTCTTCHHHHHHHHTTCCSCEEEEESCHHHHHHHHHHHHHTTCGGGCEEEECCGGGGGGTCSCEEEEEEECCCC-
T ss_pred             CEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhhCCcccCCcCEEEECCCCCc
Confidence            4799999999999999999866  78888876311  11222223332   45666778889999999999999644322


Q ss_pred             cc----Ch-hcHHHHHHHHHhcccCCcEEEEeeccCChhhHHHHHHHHHHcCceeeEEEEeeccCCCCcceeEEEEEEeC
Q 046488          400 WI----DF-VLLDFILYDWDRVLRPGGLLWIDSFFCAKEDMNDYLEVFKMLKYKKHKWVVVPKRDKDDREVFFSAVLEKP  474 (480)
Q Consensus       400 ~~----d~-~~l~~~L~EI~RVLKPGG~fiI~~f~~~~edL~~~~~~l~~lGfkkl~W~~~~k~d~~~~E~~lsav~qKP  474 (480)
                      ..    .. .....++.++.|+|  ||.+++..  +..   +.+.+.++..||+..+-......      .+-+-++|+|
T Consensus       299 r~~~~~~~~~ly~~~~~~l~r~l--~g~~~~i~--~~~---~~~~~~~~~~G~~~~~~~~~~nG------~l~~~~~~~~  365 (373)
T 3tm4_A          299 KIGKKSMIPDLYMKFFNELAKVL--EKRGVFIT--TEK---KAIEEAIAENGFEIIHHRVIGHG------GLMVHLYVVK  365 (373)
T ss_dssp             -----CCHHHHHHHHHHHHHHHE--EEEEEEEE--SCH---HHHHHHHHHTTEEEEEEEEEEET------TEEEEEEEEE
T ss_pred             ccCcchhHHHHHHHHHHHHHHHc--CCeEEEEE--CCH---HHHHHHHHHcCCEEEEEEEEEcC------CEEEEEEecc
Confidence            11    11 11145889999999  44444321  122   33445778889886654333221      1225567777


Q ss_pred             CC
Q 046488          475 PR  476 (480)
Q Consensus       475 ~~  476 (480)
                      ..
T Consensus       366 ~~  367 (373)
T 3tm4_A          366 LE  367 (373)
T ss_dssp             ET
T ss_pred             Cc
Confidence            55

>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}

Probab=98.68  E-value=5.3e-08  Score=99.06  Aligned_cols=116  Identities=5%  Similarity=-0.097  Sum_probs=75.5

Q ss_pred             CeEEEECCCCcHHHHHHhhCC--CEEEEEecCCChhHHH----HHHHhCC--CCeeeecccC-CCC-CCCccchheeccc
Q 046488          327 RIGLDFSIGTGTFAARMREFN--VTLVSAIINLGAPFNE----MIALRGL--VPLYITINQR-VPF-FDNTLDLIHTTRF  396 (480)
Q Consensus       327 R~VLDVGCGtG~fAa~Lae~g--V~Vv~vd~d~~~~~~~----~iA~rgl--ip~~~~~ae~-LPF-pd~SFDlV~ss~v  396 (480)
                      .+|||+| |+|.++..++..+  ..+++++++.  .+..    .+...|.  +.++.+++.. +|. .+++||+|++...
T Consensus       174 ~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~--~~l~~a~~~~~~~g~~~v~~~~~D~~~~l~~~~~~~fD~Vi~~~p  250 (373)
T 2qm3_A          174 KDIFVLG-DDDLTSIALMLSGLPKRIAVLDIDE--RLTKFIEKAANEIGYEDIEIFTFDLRKPLPDYALHKFDTFITDPP  250 (373)
T ss_dssp             CEEEEES-CTTCHHHHHHHHTCCSEEEEECSCH--HHHHHHHHHHHHHTCCCEEEECCCTTSCCCTTTSSCBSEEEECCC
T ss_pred             CEEEEEC-CCCHHHHHHHHhCCCCEEEEEECCH--HHHHHHHHHHHHcCCCCEEEEEChhhhhchhhccCCccEEEECCC
Confidence            5899999 9999999998875  4788887652  2222    2223343  4455566665 775 5679999999765


Q ss_pred             ccCccChhcHHHHHHHHHhcccCCcEEEEeeccCChhhH---HHHHHHHH-HcCcee
Q 046488          397 LDGWIDFVLLDFILYDWDRVLRPGGLLWIDSFFCAKEDM---NDYLEVFK-MLKYKK  449 (480)
Q Consensus       397 L~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~f~~~~edL---~~~~~~l~-~lGfkk  449 (480)
                      ++...    +..++.++.|+|||||++++..........   ..+.+.+. ..|+..
T Consensus       251 ~~~~~----~~~~l~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~  303 (373)
T 2qm3_A          251 ETLEA----IRAFVGRGIATLKGPRCAGYFGITRRESSLDKWREIQKLLLNEFNVVI  303 (373)
T ss_dssp             SSHHH----HHHHHHHHHHTBCSTTCEEEEEECTTTCCHHHHHHHHHHHHHTSCCEE
T ss_pred             CchHH----HHHHHHHHHHHcccCCeEEEEEEecCcCCHHHHHHHHHHHHHhcCcch
Confidence            43321    257999999999999954333322211222   44556666 778754

>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17

Probab=98.66  E-value=5.1e-08  Score=95.53  Aligned_cols=120  Identities=11%  Similarity=-0.040  Sum_probs=75.5

Q ss_pred             CCeEEEECCCCcHHHHHHhhC-C-CEEEEEecCCChhHHHHHHHhC-----------CCCeeeecccC-CCCCCCccchh
Q 046488          326 IRIGLDFSIGTGTFAARMREF-N-VTLVSAIINLGAPFNEMIALRG-----------LVPLYITINQR-VPFFDNTLDLI  391 (480)
Q Consensus       326 iR~VLDVGCGtG~fAa~Lae~-g-V~Vv~vd~d~~~~~~~~iA~rg-----------lip~~~~~ae~-LPFpd~SFDlV  391 (480)
                      .++|||+|||+|.++..++++ + ..++.++++   +.....|++.           .+.++.+++.. ++..+++||+|
T Consensus        76 ~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid---~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~fD~I  152 (275)
T 1iy9_A           76 PEHVLVVGGGDGGVIREILKHPSVKKATLVDID---GKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVI  152 (275)
T ss_dssp             CCEEEEESCTTCHHHHHHTTCTTCSEEEEEESC---HHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEE
T ss_pred             CCEEEEECCchHHHHHHHHhCCCCceEEEEECC---HHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCeeEE
Confidence            468999999999999999987 4 477777766   2333333221           23344555333 44557899999


Q ss_pred             eecccccCccChhc--HHHHHHHHHhcccCCcEEEEeecc--CChhhHHHHHHHHHHcCceee
Q 046488          392 HTTRFLDGWIDFVL--LDFILYDWDRVLRPGGLLWIDSFF--CAKEDMNDYLEVFKMLKYKKH  450 (480)
Q Consensus       392 ~ss~vL~h~~d~~~--l~~~L~EI~RVLKPGG~fiI~~f~--~~~edL~~~~~~l~~lGfkkl  450 (480)
                      ++.... ++.....  ...++.++.|+|||||.+++....  ...+.+..+.+.+++. |...
T Consensus       153 i~d~~~-~~~~~~~l~~~~~~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~~l~~~-F~~v  213 (275)
T 1iy9_A          153 MVDSTE-PVGPAVNLFTKGFYAGIAKALKEDGIFVAQTDNPWFTPELITNVQRDVKEI-FPIT  213 (275)
T ss_dssp             EESCSS-CCSCCCCCSTTHHHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHTT-CSEE
T ss_pred             EECCCC-CCCcchhhhHHHHHHHHHHhcCCCcEEEEEcCCccccHHHHHHHHHHHHHh-CCCe
Confidence            985432 3321100  135899999999999999886321  1233345556666665 5543

>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*

Probab=98.64  E-value=3.6e-08  Score=98.24  Aligned_cols=120  Identities=12%  Similarity=0.035  Sum_probs=72.0

Q ss_pred             CCeEEEECCCCcHHHHHHhhCC--CEEEEEecCCChhHHHHHHHh-----------CCCCeeeecccC-CCCCCCccchh
Q 046488          326 IRIGLDFSIGTGTFAARMREFN--VTLVSAIINLGAPFNEMIALR-----------GLVPLYITINQR-VPFFDNTLDLI  391 (480)
Q Consensus       326 iR~VLDVGCGtG~fAa~Lae~g--V~Vv~vd~d~~~~~~~~iA~r-----------glip~~~~~ae~-LPFpd~SFDlV  391 (480)
                      .++|||||||+|.++..++++.  ..+++++++.   .....|++           ..+.++.+++.. ++..+++||+|
T Consensus        96 ~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~---~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~fD~I  172 (304)
T 2o07_A           96 PRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDE---DVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVI  172 (304)
T ss_dssp             CCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCH---HHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEE
T ss_pred             CCEEEEECCCchHHHHHHHHcCCCCEEEEEECCH---HHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHhhCCCCceEE
Confidence            3689999999999999999873  5777777652   22222222           123344555333 55567899999


Q ss_pred             eecccccCccChh--cHHHHHHHHHhcccCCcEEEEee--ccCChhhHHHHHHHHHHcCceee
Q 046488          392 HTTRFLDGWIDFV--LLDFILYDWDRVLRPGGLLWIDS--FFCAKEDMNDYLEVFKMLKYKKH  450 (480)
Q Consensus       392 ~ss~vL~h~~d~~--~l~~~L~EI~RVLKPGG~fiI~~--f~~~~edL~~~~~~l~~lGfkkl  450 (480)
                      ++.... ++....  ....++.++.|+|||||++++..  .+...+....+.+.++.. |...
T Consensus       173 i~d~~~-~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~-f~~v  233 (304)
T 2o07_A          173 ITDSSD-PMGPAESLFKESYYQLMKTALKEDGVLCCQGECQWLHLDLIKEMRQFCQSL-FPVV  233 (304)
T ss_dssp             EEECC------------CHHHHHHHHHEEEEEEEEEEEECTTTCHHHHHHHHHHHHHH-CSEE
T ss_pred             EECCCC-CCCcchhhhHHHHHHHHHhccCCCeEEEEecCCcccchHHHHHHHHHHHHh-CCCc
Confidence            985432 222110  01358999999999999999864  222233334444444443 4433

>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}

Probab=98.64  E-value=1.7e-07  Score=94.74  Aligned_cols=119  Identities=15%  Similarity=0.086  Sum_probs=74.2

Q ss_pred             CeEEEECCCCcHHHHHHhh-C-CCEEEEEecCCChhHHHHHHHhC-------CCCeeeecccCC--CCCCCccchheecc
Q 046488          327 RIGLDFSIGTGTFAARMRE-F-NVTLVSAIINLGAPFNEMIALRG-------LVPLYITINQRV--PFFDNTLDLIHTTR  395 (480)
Q Consensus       327 R~VLDVGCGtG~fAa~Lae-~-gV~Vv~vd~d~~~~~~~~iA~rg-------lip~~~~~ae~L--PFpd~SFDlV~ss~  395 (480)
                      .+|||||||+|.++..+++ . ++.++.++++   +....+|++.       .+.++++++..+  .+++++||+|++..
T Consensus        91 ~rVLdIG~G~G~la~~la~~~p~~~v~~VEid---p~vi~~Ar~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi~D~  167 (317)
T 3gjy_A           91 LRITHLGGGACTMARYFADVYPQSRNTVVELD---AELARLSREWFDIPRAPRVKIRVDDARMVAESFTPASRDVIIRDV  167 (317)
T ss_dssp             CEEEEESCGGGHHHHHHHHHSTTCEEEEEESC---HHHHHHHHHHSCCCCTTTEEEEESCHHHHHHTCCTTCEEEEEECC
T ss_pred             CEEEEEECCcCHHHHHHHHHCCCcEEEEEECC---HHHHHHHHHhccccCCCceEEEECcHHHHHhhccCCCCCEEEECC
Confidence            3899999999999999998 3 6778787766   3444444432       133445554332  34678999999854


Q ss_pred             cccCccChhcH--HHHHHHHHhcccCCcEEEEeeccCCh-hhHHHHHHHHHHcCceee
Q 046488          396 FLDGWIDFVLL--DFILYDWDRVLRPGGLLWIDSFFCAK-EDMNDYLEVFKMLKYKKH  450 (480)
Q Consensus       396 vL~h~~d~~~l--~~~L~EI~RVLKPGG~fiI~~f~~~~-edL~~~~~~l~~lGfkkl  450 (480)
                      .. ++..+..+  ..++.++.|+|||||+|++....... ..+..+...++.. |..+
T Consensus       168 ~~-~~~~~~~L~t~efl~~~~r~LkpgGvlv~~~~~~~~~~~~~~~~~tL~~v-F~~v  223 (317)
T 3gjy_A          168 FA-GAITPQNFTTVEFFEHCHRGLAPGGLYVANCGDHSDLRGAKSELAGMMEV-FEHV  223 (317)
T ss_dssp             ST-TSCCCGGGSBHHHHHHHHHHEEEEEEEEEEEEECTTCHHHHHHHHHHHHH-CSEE
T ss_pred             CC-ccccchhhhHHHHHHHHHHhcCCCcEEEEEecCCcchHHHHHHHHHHHHH-CCce
Confidence            32 22211111  46999999999999999886543222 2233444444443 5443

>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}

Probab=98.64  E-value=9.4e-08  Score=92.67  Aligned_cols=120  Identities=11%  Similarity=0.009  Sum_probs=80.8

Q ss_pred             CeEEEECCCCcHHHHHHhhCCC--EEEEEecCCCh--hHHHHHHHhCC---CCeeeecccCCCCCCCccchheecccccC
Q 046488          327 RIGLDFSIGTGTFAARMREFNV--TLVSAIINLGA--PFNEMIALRGL---VPLYITINQRVPFFDNTLDLIHTTRFLDG  399 (480)
Q Consensus       327 R~VLDVGCGtG~fAa~Lae~gV--~Vv~vd~d~~~--~~~~~iA~rgl---ip~~~~~ae~LPFpd~SFDlV~ss~vL~h  399 (480)
                      .+|||||||+|.++..++..+.  .|+++|.+..+  .+...++..+.   +.+..++......+++.||+|+.....- 
T Consensus        23 ~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N~~~~gl~~~I~~~~gD~l~~~~~~~~~D~IviaGmGg-  101 (230)
T 3lec_A           23 ARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRLANGLSAFEEADNIDTITICGMGG-  101 (230)
T ss_dssp             EEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEEECH-
T ss_pred             CEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccccccccCEEEEeCCch-
Confidence            4899999999999999999863  46777765321  12233444443   3445565444444555899988655432 


Q ss_pred             ccChhcHHHHHHHHHhcccCCcEEEEeeccCChhhHHHHHHHHHHcCceeeEEEEe
Q 046488          400 WIDFVLLDFILYDWDRVLRPGGLLWIDSFFCAKEDMNDYLEVFKMLKYKKHKWVVV  455 (480)
Q Consensus       400 ~~d~~~l~~~L~EI~RVLKPGG~fiI~~f~~~~edL~~~~~~l~~lGfkkl~W~~~  455 (480)
                          ..+..++.+..+.|+++|+|++....    ....+.+.+...||.-..-...
T Consensus       102 ----~lI~~IL~~~~~~l~~~~~lIlqp~~----~~~~lr~~L~~~Gf~i~~E~lv  149 (230)
T 3lec_A          102 ----RLIADILNNDIDKLQHVKTLVLQPNN----REDDLRKWLAANDFEIVAEDIL  149 (230)
T ss_dssp             ----HHHHHHHHHTGGGGTTCCEEEEEESS----CHHHHHHHHHHTTEEEEEEEEE
T ss_pred             ----HHHHHHHHHHHHHhCcCCEEEEECCC----ChHHHHHHHHHCCCEEEEEEEE
Confidence                22356899999999999999997632    2455667788889987665544

>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*

Probab=98.63  E-value=5.9e-08  Score=96.04  Aligned_cols=119  Identities=11%  Similarity=-0.017  Sum_probs=71.3

Q ss_pred             CeEEEECCCCcHHHHHHhhC--CCEEEEEecCCChhHHHHHHHhC-----------CCCeeeecccC-CCCCCCccchhe
Q 046488          327 RIGLDFSIGTGTFAARMREF--NVTLVSAIINLGAPFNEMIALRG-----------LVPLYITINQR-VPFFDNTLDLIH  392 (480)
Q Consensus       327 R~VLDVGCGtG~fAa~Lae~--gV~Vv~vd~d~~~~~~~~iA~rg-----------lip~~~~~ae~-LPFpd~SFDlV~  392 (480)
                      .+|||+|||+|.++..++++  ...+++++++.   .....+++.           .+.++.+++.. ++..+++||+|+
T Consensus        92 ~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~---~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii  168 (296)
T 1inl_A           92 KKVLIIGGGDGGTLREVLKHDSVEKAILCEVDG---LVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVII  168 (296)
T ss_dssp             CEEEEEECTTCHHHHHHTTSTTCSEEEEEESCH---HHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEE
T ss_pred             CEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCH---HHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCceEEE
Confidence            58999999999999999987  35777877652   222222221           23344454332 455678999999


Q ss_pred             ecccccCccC-hh--cHHHHHHHHHhcccCCcEEEEeecc--CChhhHHHHHHHHHHcCceee
Q 046488          393 TTRFLDGWID-FV--LLDFILYDWDRVLRPGGLLWIDSFF--CAKEDMNDYLEVFKMLKYKKH  450 (480)
Q Consensus       393 ss~vL~h~~d-~~--~l~~~L~EI~RVLKPGG~fiI~~f~--~~~edL~~~~~~l~~lGfkkl  450 (480)
                      +... .+|.. ..  ....++.++.|+|||||.+++....  ...+....+.+.+++. |..+
T Consensus       169 ~d~~-~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~-F~~v  229 (296)
T 1inl_A          169 IDST-DPTAGQGGHLFTEEFYQACYDALKEDGVFSAETEDPFYDIGWFKLAYRRISKV-FPIT  229 (296)
T ss_dssp             EEC-----------CCSHHHHHHHHHHEEEEEEEEEECCCTTTTHHHHHHHHHHHHHH-CSEE
T ss_pred             EcCC-CcccCchhhhhHHHHHHHHHHhcCCCcEEEEEccCcccCHHHHHHHHHHHHHH-CCce
Confidence            7432 23111 10  0146899999999999999886311  1233344455555554 5443

>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1

Probab=98.63  E-value=2e-08  Score=93.25  Aligned_cols=106  Identities=15%  Similarity=0.113  Sum_probs=67.0

Q ss_pred             hHHHhcCCCCCCCCeEEEECCCCcHHHHHHhhC---CCEEEEEecCCCh--hHHHHHHHhCC---CCeeeeccc----CC
Q 046488          314 LIPEVLDIKPGEIRIGLDFSIGTGTFAARMREF---NVTLVSAIINLGA--PFNEMIALRGL---VPLYITINQ----RV  381 (480)
Q Consensus       314 ~I~~vL~l~~g~iR~VLDVGCGtG~fAa~Lae~---gV~Vv~vd~d~~~--~~~~~iA~rgl---ip~~~~~ae----~L  381 (480)
                      ++..++.+.++  .+|||+|||+|.++..+++.   +..+++++++...  .+...+...+.   +.+..+++.    .+
T Consensus        60 ~l~~l~~~~~~--~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~  137 (229)
T 2avd_A           60 LLANLARLIQA--KKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDEL  137 (229)
T ss_dssp             HHHHHHHHTTC--CEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHH
T ss_pred             HHHHHHHhcCC--CEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHHHHHH
Confidence            44444444444  48999999999999999985   5688888876421  11122222332   333444322    12


Q ss_pred             CCCC--CccchheecccccCccChhcHHHHHHHHHhcccCCcEEEEee
Q 046488          382 PFFD--NTLDLIHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDS  427 (480)
Q Consensus       382 PFpd--~SFDlV~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~  427 (480)
                      +...  ++||+|++....    .  ....++.++.|+|||||++++.+
T Consensus       138 ~~~~~~~~~D~v~~d~~~----~--~~~~~l~~~~~~L~pgG~lv~~~  179 (229)
T 2avd_A          138 LAAGEAGTFDVAVVDADK----E--NCSAYYERCLQLLRPGGILAVLR  179 (229)
T ss_dssp             HHTTCTTCEEEEEECSCS----T--THHHHHHHHHHHEEEEEEEEEEC
T ss_pred             HhcCCCCCccEEEECCCH----H--HHHHHHHHHHHHcCCCeEEEEEC
Confidence            2111  789999985431    1  12468999999999999999975

>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A

Probab=98.62  E-value=8.2e-08  Score=97.23  Aligned_cols=97  Identities=15%  Similarity=0.069  Sum_probs=64.1

Q ss_pred             CCeEEEECCCCcHHHHHHhhC--CCEEEEEecCCChhHHHHHHHh-----------CCCCeeeecccC-CC-CCCCccch
Q 046488          326 IRIGLDFSIGTGTFAARMREF--NVTLVSAIINLGAPFNEMIALR-----------GLVPLYITINQR-VP-FFDNTLDL  390 (480)
Q Consensus       326 iR~VLDVGCGtG~fAa~Lae~--gV~Vv~vd~d~~~~~~~~iA~r-----------glip~~~~~ae~-LP-Fpd~SFDl  390 (480)
                      .++|||||||+|.++..++++  ...+++++++.   .....|++           ..+.++.+++.. ++ +++++||+
T Consensus       121 ~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~---~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~~~~~~fDl  197 (334)
T 1xj5_A          121 PKKVLVIGGGDGGVLREVARHASIEQIDMCEIDK---MVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDA  197 (334)
T ss_dssp             CCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCH---HHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEE
T ss_pred             CCEEEEECCCccHHHHHHHHcCCCCEEEEEECCH---HHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHhccCCCccE
Confidence            368999999999999999987  35778887652   22222222           123344555333 22 35789999


Q ss_pred             heecccccCccChhc--HHHHHHHHHhcccCCcEEEEe
Q 046488          391 IHTTRFLDGWIDFVL--LDFILYDWDRVLRPGGLLWID  426 (480)
Q Consensus       391 V~ss~vL~h~~d~~~--l~~~L~EI~RVLKPGG~fiI~  426 (480)
                      |++... .++.....  ...++.++.|+|||||+|++.
T Consensus       198 Ii~d~~-~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~  234 (334)
T 1xj5_A          198 VIVDSS-DPIGPAKELFEKPFFQSVARALRPGGVVCTQ  234 (334)
T ss_dssp             EEECCC-CTTSGGGGGGSHHHHHHHHHHEEEEEEEEEE
T ss_pred             EEECCC-CccCcchhhhHHHHHHHHHHhcCCCcEEEEe
Confidence            998543 22211110  156999999999999999985

>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*

Probab=98.62  E-value=2.1e-07  Score=91.23  Aligned_cols=118  Identities=11%  Similarity=0.027  Sum_probs=71.4

Q ss_pred             CeEEEECCCCcHHHHHHhhCC-CEEEEEecCCChhHHHHHHHhC-----------------CCCeeeecccC-CCCCCCc
Q 046488          327 RIGLDFSIGTGTFAARMREFN-VTLVSAIINLGAPFNEMIALRG-----------------LVPLYITINQR-VPFFDNT  387 (480)
Q Consensus       327 R~VLDVGCGtG~fAa~Lae~g-V~Vv~vd~d~~~~~~~~iA~rg-----------------lip~~~~~ae~-LPFpd~S  387 (480)
                      .+|||||||+|.++..+++++ ..+++++++   +.....|++.                 .+.+..+++.. ++. +++
T Consensus        77 ~~VLdiG~G~G~~~~~l~~~~~~~v~~vDid---~~~i~~ar~~~~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~-~~~  152 (281)
T 1mjf_A           77 KRVLVIGGGDGGTVREVLQHDVDEVIMVEID---EDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKN-NRG  152 (281)
T ss_dssp             CEEEEEECTTSHHHHHHTTSCCSEEEEEESC---HHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHH-CCC
T ss_pred             CeEEEEcCCcCHHHHHHHhCCCCEEEEEECC---HHHHHHHHHHHhhccccccccccCCCCcEEEEECchHHHhcc-cCC
Confidence            589999999999999999874 467777765   2223333221                 12233344322 333 789


Q ss_pred             cchheecccccCccChhcH--HHHHHHHHhcccCCcEEEEeec--cCChhhHHHHHHHHHHcCceee
Q 046488          388 LDLIHTTRFLDGWIDFVLL--DFILYDWDRVLRPGGLLWIDSF--FCAKEDMNDYLEVFKMLKYKKH  450 (480)
Q Consensus       388 FDlV~ss~vL~h~~d~~~l--~~~L~EI~RVLKPGG~fiI~~f--~~~~edL~~~~~~l~~lGfkkl  450 (480)
                      ||+|++.... ++.....+  ..++.++.|+|||||.+++..-  +...+.+..+.+.++.. |...
T Consensus       153 fD~Ii~d~~~-~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~~l~~~-f~~v  217 (281)
T 1mjf_A          153 FDVIIADSTD-PVGPAKVLFSEEFYRYVYDALNNPGIYVTQAGSVYLFTDELISAYKEMKKV-FDRV  217 (281)
T ss_dssp             EEEEEEECCC-CC-----TTSHHHHHHHHHHEEEEEEEEEEEEETTTSHHHHHHHHHHHHHH-CSEE
T ss_pred             eeEEEECCCC-CCCcchhhhHHHHHHHHHHhcCCCcEEEEEcCCcccCHHHHHHHHHHHHHH-CCce
Confidence            9999985442 33221111  4689999999999999988631  12233344555555554 5443

>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*

Probab=98.61  E-value=3.3e-08  Score=98.69  Aligned_cols=120  Identities=13%  Similarity=-0.044  Sum_probs=75.0

Q ss_pred             CCeEEEECCCCcHHHHHHhhC--CCEEEEEecCCChhHHHHHHHh------------CCCCeeeecccC-CCCCCCccch
Q 046488          326 IRIGLDFSIGTGTFAARMREF--NVTLVSAIINLGAPFNEMIALR------------GLVPLYITINQR-VPFFDNTLDL  390 (480)
Q Consensus       326 iR~VLDVGCGtG~fAa~Lae~--gV~Vv~vd~d~~~~~~~~iA~r------------glip~~~~~ae~-LPFpd~SFDl  390 (480)
                      .++|||||||+|.++..++++  +..+++++++.   .....|++            ..+.++.+++.. ++..+++||+
T Consensus        78 ~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~---~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~  154 (314)
T 1uir_A           78 PKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDG---ELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDV  154 (314)
T ss_dssp             CCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCH---HHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEE
T ss_pred             CCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCH---HHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhcCCCccE
Confidence            358999999999999999987  45777777662   22222221            123344555433 4556889999


Q ss_pred             heecccccCc---cChhc--HHHHHHHHHhcccCCcEEEEeecc---CChhhHHHHHHHHHHcCceee
Q 046488          391 IHTTRFLDGW---IDFVL--LDFILYDWDRVLRPGGLLWIDSFF---CAKEDMNDYLEVFKMLKYKKH  450 (480)
Q Consensus       391 V~ss~vL~h~---~d~~~--l~~~L~EI~RVLKPGG~fiI~~f~---~~~edL~~~~~~l~~lGfkkl  450 (480)
                      |++.... ++   .....  ...++.++.|+|||||.+++....   ...+....+.+.++.. |...
T Consensus       155 Ii~d~~~-~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~~l~~~-F~~v  220 (314)
T 1uir_A          155 VIIDLTD-PVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQTGMILLTHHRVHPVVHRTVREA-FRYV  220 (314)
T ss_dssp             EEEECCC-CBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEEEEECC---CHHHHHHHHHHTT-CSEE
T ss_pred             EEECCCC-cccccCcchhccHHHHHHHHHHhcCCCcEEEEEccCccccCHHHHHHHHHHHHHH-CCce
Confidence            9986543 44   21111  156899999999999999886321   1123344555666665 5433

>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*

Probab=98.60  E-value=2.4e-07  Score=93.05  Aligned_cols=119  Identities=16%  Similarity=0.103  Sum_probs=74.7

Q ss_pred             CeEEEECCCCcHHHHHHhhC--CCEEEEEecCCChhHHHHHHHhC-----------CCCeeeecccC-CCCCCCccchhe
Q 046488          327 RIGLDFSIGTGTFAARMREF--NVTLVSAIINLGAPFNEMIALRG-----------LVPLYITINQR-VPFFDNTLDLIH  392 (480)
Q Consensus       327 R~VLDVGCGtG~fAa~Lae~--gV~Vv~vd~d~~~~~~~~iA~rg-----------lip~~~~~ae~-LPFpd~SFDlV~  392 (480)
                      .+|||||||+|.++..++++  +..+++++++   +.....|++.           .+.+..+++.. ++..+++||+|+
T Consensus       118 ~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis---~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fDvIi  194 (321)
T 2pt6_A          118 KNVLVVGGGDGGIIRELCKYKSVENIDICEID---ETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVII  194 (321)
T ss_dssp             CEEEEEECTTCHHHHHHTTCTTCCEEEEEESC---HHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEE
T ss_pred             CEEEEEcCCccHHHHHHHHcCCCCEEEEEECC---HHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhhcCCCceEEE
Confidence            58999999999999999987  4577888766   2333333321           12234444322 344578999999


Q ss_pred             ecccccCccChhcH--HHHHHHHHhcccCCcEEEEeec--cCChhhHHHHHHHHHHcCceee
Q 046488          393 TTRFLDGWIDFVLL--DFILYDWDRVLRPGGLLWIDSF--FCAKEDMNDYLEVFKMLKYKKH  450 (480)
Q Consensus       393 ss~vL~h~~d~~~l--~~~L~EI~RVLKPGG~fiI~~f--~~~~edL~~~~~~l~~lGfkkl  450 (480)
                      +... .++.....+  ..++.++.|+|||||++++...  +...+.+..+.+.++.. |...
T Consensus       195 ~d~~-~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~-F~~v  254 (321)
T 2pt6_A          195 VDSS-DPIGPAETLFNQNFYEKIYNALKPNGYCVAQCESLWIHVGTIKNMIGYAKKL-FKKV  254 (321)
T ss_dssp             EECC-CSSSGGGGGSSHHHHHHHHHHEEEEEEEEEEECCTTTCHHHHHHHHHHHHTT-CSEE
T ss_pred             ECCc-CCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcCCcccCHHHHHHHHHHHHHH-CCCe
Confidence            8542 233221111  4689999999999999988531  12333455555666665 4443

>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17

Probab=98.59  E-value=5.2e-08  Score=97.79  Aligned_cols=120  Identities=13%  Similarity=0.051  Sum_probs=70.8

Q ss_pred             CCeEEEECCCCcHHHHHHhhC--CCEEEEEecCCChhHHHHHHHhCC-----------CCeeeecccC-CCCCCCccchh
Q 046488          326 IRIGLDFSIGTGTFAARMREF--NVTLVSAIINLGAPFNEMIALRGL-----------VPLYITINQR-VPFFDNTLDLI  391 (480)
Q Consensus       326 iR~VLDVGCGtG~fAa~Lae~--gV~Vv~vd~d~~~~~~~~iA~rgl-----------ip~~~~~ae~-LPFpd~SFDlV  391 (480)
                      .++|||||||+|.++..++++  ...+++++++   +.....|++..           +.+..+++.. ++..+++||+|
T Consensus       109 ~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid---~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~I  185 (314)
T 2b2c_A          109 PKRVLIIGGGDGGILREVLKHESVEKVTMCEID---EMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVI  185 (314)
T ss_dssp             CCEEEEESCTTSHHHHHHTTCTTCCEEEEECSC---HHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEE
T ss_pred             CCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECC---HHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHhcCCCceEE
Confidence            358999999999999999987  3577777765   33333333321           2233344322 44467899999


Q ss_pred             eecccccCccChhcH--HHHHHHHHhcccCCcEEEEee--ccCChhhHHHHHHHHHHcCceee
Q 046488          392 HTTRFLDGWIDFVLL--DFILYDWDRVLRPGGLLWIDS--FFCAKEDMNDYLEVFKMLKYKKH  450 (480)
Q Consensus       392 ~ss~vL~h~~d~~~l--~~~L~EI~RVLKPGG~fiI~~--f~~~~edL~~~~~~l~~lGfkkl  450 (480)
                      ++... .++.....+  ..++.++.|+|||||++++..  .+...+....+.+.++.+ |...
T Consensus       186 i~d~~-~~~~~~~~l~t~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~v-F~~v  246 (314)
T 2b2c_A          186 ITDSS-DPVGPAESLFGQSYYELLRDALKEDGILSSQGESVWLHLPLIAHLVAFNRKI-FPAV  246 (314)
T ss_dssp             EECCC--------------HHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHHH-CSEE
T ss_pred             EEcCC-CCCCcchhhhHHHHHHHHHhhcCCCeEEEEECCCcccCHHHHHHHHHHHHHH-CCcc
Confidence            98543 333222111  468999999999999999863  112233344455555554 5433

>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}

Probab=98.59  E-value=1.2e-07  Score=92.66  Aligned_cols=120  Identities=11%  Similarity=-0.012  Sum_probs=79.0

Q ss_pred             CeEEEECCCCcHHHHHHhhCCC--EEEEEecCCCh--hHHHHHHHhCC---CCeeeecccCCCCCCCccchheecccccC
Q 046488          327 RIGLDFSIGTGTFAARMREFNV--TLVSAIINLGA--PFNEMIALRGL---VPLYITINQRVPFFDNTLDLIHTTRFLDG  399 (480)
Q Consensus       327 R~VLDVGCGtG~fAa~Lae~gV--~Vv~vd~d~~~--~~~~~iA~rgl---ip~~~~~ae~LPFpd~SFDlV~ss~vL~h  399 (480)
                      .+|||||||+|.++..|+..+.  .+++++++..+  .+...++..+.   +.+..++......+++.||+|+.....- 
T Consensus        23 ~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~I~v~~gD~l~~~~~~~~~D~IviagmGg-  101 (244)
T 3gnl_A           23 ERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNGLAVIEKKDAIDTIVIAGMGG-  101 (244)
T ss_dssp             EEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEEECH-
T ss_pred             CEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEecchhhccCccccccEEEEeCCch-
Confidence            3899999999999999999863  56777765321  12223334443   3445555444444444699988654432 


Q ss_pred             ccChhcHHHHHHHHHhcccCCcEEEEeeccCChhhHHHHHHHHHHcCceeeEEEEe
Q 046488          400 WIDFVLLDFILYDWDRVLRPGGLLWIDSFFCAKEDMNDYLEVFKMLKYKKHKWVVV  455 (480)
Q Consensus       400 ~~d~~~l~~~L~EI~RVLKPGG~fiI~~f~~~~edL~~~~~~l~~lGfkkl~W~~~  455 (480)
                          ..+..++.+..+.|+++|+|++..-.    ....+.+.+...||.-..-...
T Consensus       102 ----~lI~~IL~~~~~~L~~~~~lIlq~~~----~~~~lr~~L~~~Gf~i~~E~lv  149 (244)
T 3gnl_A          102 ----TLIRTILEEGAAKLAGVTKLILQPNI----AAWQLREWSEQNNWLITSEAIL  149 (244)
T ss_dssp             ----HHHHHHHHHTGGGGTTCCEEEEEESS----CHHHHHHHHHHHTEEEEEEEEE
T ss_pred             ----HHHHHHHHHHHHHhCCCCEEEEEcCC----ChHHHHHHHHHCCCEEEEEEEE
Confidence                22356899999999999999997532    3345666778889986654443

>3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A*

Probab=98.59  E-value=1.2e-07  Score=94.37  Aligned_cols=145  Identities=10%  Similarity=0.017  Sum_probs=83.7

Q ss_pred             CCCCCCCeEEEECCCCcHHHHHHhhC-CCE-EEEEecCCChhHHH-HHHHhC-CCCeeeecccCCCCCCCccchheeccc
Q 046488          321 IKPGEIRIGLDFSIGTGTFAARMREF-NVT-LVSAIINLGAPFNE-MIALRG-LVPLYITINQRVPFFDNTLDLIHTTRF  396 (480)
Q Consensus       321 l~~g~iR~VLDVGCGtG~fAa~Lae~-gV~-Vv~vd~d~~~~~~~-~iA~rg-lip~~~~~ae~LPFpd~SFDlV~ss~v  396 (480)
                      ++++.  +|||+|||+|.|+..++++ ++. +.++++...-+... .....+ .+-...+.++...+.++.||+|+|..+
T Consensus        72 l~~~~--~VLDLGaAPGGWSQvAa~~~~~~~v~g~dVGvDl~~~pi~~~~~g~~ii~~~~~~dv~~l~~~~~DlVlsD~a  149 (277)
T 3evf_A           72 VKLEG--RVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGRDGHEKPMNVQSLGWNIITFKDKTDIHRLEPVKCDTLLCDIG  149 (277)
T ss_dssp             SCCCE--EEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTCCCCCCCCBTTGGGEEEECSCCTTTSCCCCCSEEEECCC
T ss_pred             CCCCC--EEEEecCCCCHHHHHHHHhcCCCcceeEEEeccCcccccccCcCCCCeEEEeccceehhcCCCCccEEEecCc
Confidence            55553  7999999999999988875 443 33333321000000 000000 011122334556788899999999765


Q ss_pred             cc---CccChhcHHHHHHHHHhcccCC-cEEEEeeccCChhhHHHHHHHHHHcCceeeEEEEeeccCCCCcceeEEE
Q 046488          397 LD---GWIDFVLLDFILYDWDRVLRPG-GLLWIDSFFCAKEDMNDYLEVFKMLKYKKHKWVVVPKRDKDDREVFFSA  469 (480)
Q Consensus       397 L~---h~~d~~~l~~~L~EI~RVLKPG-G~fiI~~f~~~~edL~~~~~~l~~lGfkkl~W~~~~k~d~~~~E~~lsa  469 (480)
                      ..   ++.|......+|..+.++|||| |.|++.-|..-.++...+...+++. |+++.+..- -......|+|+.+
T Consensus       150 pnsG~~~~D~~rs~~LL~~a~~~LkpG~G~FV~KVf~pyg~~~~~l~~~lk~~-F~~V~~~KP-aSR~~S~E~Y~V~  224 (277)
T 3evf_A          150 ESSSSSVTEGERTVRVLDTVEKWLACGVDNFCVKVLAPYMPDVLEKLELLQRR-FGGTVIRNP-LSRNSTHEMYYVS  224 (277)
T ss_dssp             CCCSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEESCTTSHHHHHHHHHHHHH-HCCEEECCT-TSCTTCCCEEEES
T ss_pred             cCcCchHHHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCCccHHHHHHHHHHh-cCCEEEEeC-CCCCCCCceEEEE
Confidence            43   1333321123578889999999 9999966654345555555555554 777665443 2222567888864

>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*

Probab=98.56  E-value=1.2e-07  Score=93.15  Aligned_cols=120  Identities=16%  Similarity=0.095  Sum_probs=74.6

Q ss_pred             CCeEEEECCCCcHHHHHHhhC--CCEEEEEecCCChhHHHHHHHhC-----------CCCeeeecccC-CCCCCCccchh
Q 046488          326 IRIGLDFSIGTGTFAARMREF--NVTLVSAIINLGAPFNEMIALRG-----------LVPLYITINQR-VPFFDNTLDLI  391 (480)
Q Consensus       326 iR~VLDVGCGtG~fAa~Lae~--gV~Vv~vd~d~~~~~~~~iA~rg-----------lip~~~~~ae~-LPFpd~SFDlV  391 (480)
                      .++|||+|||+|.++..++++  +..+++++++   +.....+++.           .+.+..+++.. ++..+++||+|
T Consensus        79 ~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid---~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~I  155 (283)
T 2i7c_A           79 PKNVLVVGGGDGGIIRELCKYKSVENIDICEID---ETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVI  155 (283)
T ss_dssp             CCEEEEEECTTSHHHHHHTTCTTCCEEEEEESC---HHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEE
T ss_pred             CCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECC---HHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhCCCCceEE
Confidence            368999999999999999987  3577777766   3333333332           12234444332 33347899999


Q ss_pred             eecccccCccChhcH--HHHHHHHHhcccCCcEEEEeec--cCChhhHHHHHHHHHHcCceee
Q 046488          392 HTTRFLDGWIDFVLL--DFILYDWDRVLRPGGLLWIDSF--FCAKEDMNDYLEVFKMLKYKKH  450 (480)
Q Consensus       392 ~ss~vL~h~~d~~~l--~~~L~EI~RVLKPGG~fiI~~f--~~~~edL~~~~~~l~~lGfkkl  450 (480)
                      ++... .++.....+  ..++.++.|+|||||.+++...  +...+....+...++.. |...
T Consensus       156 i~d~~-~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~~l~~~-F~~v  216 (283)
T 2i7c_A          156 IVDSS-DPIGPAETLFNQNFYEKIYNALKPNGYCVAQCESLWIHVGTIKNMIGYAKKL-FKKV  216 (283)
T ss_dssp             EEECC-CTTTGGGGGSSHHHHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHTT-CSEE
T ss_pred             EEcCC-CCCCcchhhhHHHHHHHHHHhcCCCcEEEEECCCcccCHHHHHHHHHHHHHH-CCce
Confidence            98543 233222222  4699999999999999988631  12233344455555554 5543

>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*

Probab=98.56  E-value=2.1e-07  Score=89.77  Aligned_cols=119  Identities=12%  Similarity=0.035  Sum_probs=77.6

Q ss_pred             CeEEEECCCCcHHHHHHhhCCC--EEEEEecCCCh--hHHHHHHHhCC---CCeeeec-ccCCCCCCCccchheeccccc
Q 046488          327 RIGLDFSIGTGTFAARMREFNV--TLVSAIINLGA--PFNEMIALRGL---VPLYITI-NQRVPFFDNTLDLIHTTRFLD  398 (480)
Q Consensus       327 R~VLDVGCGtG~fAa~Lae~gV--~Vv~vd~d~~~--~~~~~iA~rgl---ip~~~~~-ae~LPFpd~SFDlV~ss~vL~  398 (480)
                      .+|||||||+|.++..++..+.  .|++++.+..+  .+...++..+.   +.+..++ .+.++.. ..||+|+....- 
T Consensus        17 ~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~i~~~~~d~l~~l~~~-~~~D~IviaG~G-   94 (225)
T 3kr9_A           17 AILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANGLAAFEET-DQVSVITIAGMG-   94 (225)
T ss_dssp             EEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGG-GCCCEEEEEEEC-
T ss_pred             CEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECchhhhcccC-cCCCEEEEcCCC-
Confidence            3899999999999999999763  56777765321  12223333443   2344444 3444432 269998865432 


Q ss_pred             CccChhcHHHHHHHHHhcccCCcEEEEeeccCChhhHHHHHHHHHHcCceeeEEEEe
Q 046488          399 GWIDFVLLDFILYDWDRVLRPGGLLWIDSFFCAKEDMNDYLEVFKMLKYKKHKWVVV  455 (480)
Q Consensus       399 h~~d~~~l~~~L~EI~RVLKPGG~fiI~~f~~~~edL~~~~~~l~~lGfkkl~W~~~  455 (480)
                          ...+..++.+..+.|+|+|+|++..-    .....+...+...||.-..-...
T Consensus        95 ----g~~i~~Il~~~~~~L~~~~~lVlq~~----~~~~~vr~~L~~~Gf~i~~e~lv  143 (225)
T 3kr9_A           95 ----GRLIARILEEGLGKLANVERLILQPN----NREDDLRIWLQDHGFQIVAESIL  143 (225)
T ss_dssp             ----HHHHHHHHHHTGGGCTTCCEEEEEES----SCHHHHHHHHHHTTEEEEEEEEE
T ss_pred             ----hHHHHHHHHHHHHHhCCCCEEEEECC----CCHHHHHHHHHHCCCEEEEEEEE
Confidence                12235689999999999999998654    23345667788889987654443

>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}

Probab=98.54  E-value=5.1e-08  Score=92.79  Aligned_cols=106  Identities=11%  Similarity=0.018  Sum_probs=67.5

Q ss_pred             hHHHhcCCCCCCCCeEEEECCCCcHHHHHHhhC---CCEEEEEecCCCh--hHHHHHHHhCC---CCeeeecc-cCCCC-
Q 046488          314 LIPEVLDIKPGEIRIGLDFSIGTGTFAARMREF---NVTLVSAIINLGA--PFNEMIALRGL---VPLYITIN-QRVPF-  383 (480)
Q Consensus       314 ~I~~vL~l~~g~iR~VLDVGCGtG~fAa~Lae~---gV~Vv~vd~d~~~--~~~~~iA~rgl---ip~~~~~a-e~LPF-  383 (480)
                      ++..++...++  ++|||||||+|..+..+++.   +..+++++++...  .+...+...+.   +.+..+++ +.++. 
T Consensus        61 ~l~~l~~~~~~--~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l  138 (237)
T 3c3y_A           61 LMSFVLKLVNA--KKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLALDNL  138 (237)
T ss_dssp             HHHHHHHHTTC--CEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHH
T ss_pred             HHHHHHHhhCC--CEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHH
Confidence            44444444333  48999999999999999875   5688888865211  11122223333   23444442 22332 


Q ss_pred             -----CCCccchheecccccCccChhcHHHHHHHHHhcccCCcEEEEee
Q 046488          384 -----FDNTLDLIHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDS  427 (480)
Q Consensus       384 -----pd~SFDlV~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~  427 (480)
                           ++++||+|++...    ...  ...++.++.|+|||||++++++
T Consensus       139 ~~~~~~~~~fD~I~~d~~----~~~--~~~~l~~~~~~L~pGG~lv~d~  181 (237)
T 3c3y_A          139 LQGQESEGSYDFGFVDAD----KPN--YIKYHERLMKLVKVGGIVAYDN  181 (237)
T ss_dssp             HHSTTCTTCEEEEEECSC----GGG--HHHHHHHHHHHEEEEEEEEEEC
T ss_pred             HhccCCCCCcCEEEECCc----hHH--HHHHHHHHHHhcCCCeEEEEec
Confidence                 2689999997532    211  2568999999999999999875

>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24

Probab=98.51  E-value=1.9e-07  Score=91.85  Aligned_cols=100  Identities=14%  Similarity=0.181  Sum_probs=63.0

Q ss_pred             HhcCCCCCCCCeEEEECCCCcHHHHHHhhCCCEEEEEecCCChhHHHHHHHh----C---CCCeeeecccCCCCCCCccc
Q 046488          317 EVLDIKPGEIRIGLDFSIGTGTFAARMREFNVTLVSAIINLGAPFNEMIALR----G---LVPLYITINQRVPFFDNTLD  389 (480)
Q Consensus       317 ~vL~l~~g~iR~VLDVGCGtG~fAa~Lae~gV~Vv~vd~d~~~~~~~~iA~r----g---lip~~~~~ae~LPFpd~SFD  389 (480)
                      +.+++.++  .+|||||||+|.++..|++++..+++++++.  .+......+    +   .+.++.+++..++++  +||
T Consensus        22 ~~~~~~~~--~~VLDiG~G~G~lt~~L~~~~~~v~~vD~~~--~~~~~a~~~~~~~~~~~~v~~~~~D~~~~~~~--~fD   95 (285)
T 1zq9_A           22 DKAALRPT--DVVLEVGPGTGNMTVKLLEKAKKVVACELDP--RLVAELHKRVQGTPVASKLQVLVGDVLKTDLP--FFD   95 (285)
T ss_dssp             HHTCCCTT--CEEEEECCTTSTTHHHHHHHSSEEEEEESCH--HHHHHHHHHHTTSTTGGGEEEEESCTTTSCCC--CCS
T ss_pred             HhcCCCCC--CEEEEEcCcccHHHHHHHhhCCEEEEEECCH--HHHHHHHHHHHhcCCCCceEEEEcceecccch--hhc
Confidence            34445444  4899999999999999999888888888762  332222211    1   234455667666765  799


Q ss_pred             hheecccccCccChhcHHHHH--------------HHH--HhcccCCcEEE
Q 046488          390 LIHTTRFLDGWIDFVLLDFIL--------------YDW--DRVLRPGGLLW  424 (480)
Q Consensus       390 lV~ss~vL~h~~d~~~l~~~L--------------~EI--~RVLKPGG~fi  424 (480)
                      +|+++..+ +|..+. +..++              .|+  +|+|||||.++
T Consensus        96 ~vv~nlpy-~~~~~~-~~~~l~~~~~~~~~~~m~qkEva~r~vlkPGg~~y  144 (285)
T 1zq9_A           96 TCVANLPY-QISSPF-VFKLLLHRPFFRCAILMFQREFALRLVAKPGDKLY  144 (285)
T ss_dssp             EEEEECCG-GGHHHH-HHHHHHCSSCCSEEEEEEEHHHHHHHHCCTTCTTC
T ss_pred             EEEEecCc-ccchHH-HHHHHhcCcchhhhhhhhhHHHHHHHhcCCCCccc
Confidence            99986432 232221 01122              344  47999999863

>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*

Probab=98.50  E-value=2.9e-07  Score=92.57  Aligned_cols=115  Identities=13%  Similarity=0.108  Sum_probs=73.1

Q ss_pred             CeEEEECCCCcHHHHHHhhCCCEEEEEecCCCh--hHHHHHHHhCC---CCeeeecccCCCCCCCccchheecccccCcc
Q 046488          327 RIGLDFSIGTGTFAARMREFNVTLVSAIINLGA--PFNEMIALRGL---VPLYITINQRVPFFDNTLDLIHTTRFLDGWI  401 (480)
Q Consensus       327 R~VLDVGCGtG~fAa~Lae~gV~Vv~vd~d~~~--~~~~~iA~rgl---ip~~~~~ae~LPFpd~SFDlV~ss~vL~h~~  401 (480)
                      .+|||+|||+|.++.. ++.+..+++++.+..+  .+...+...+.   +.++.+++..+.   ++||+|++.--.  . 
T Consensus       197 ~~VLDlg~G~G~~~l~-a~~~~~V~~vD~s~~ai~~a~~n~~~n~l~~~v~~~~~D~~~~~---~~fD~Vi~dpP~--~-  269 (336)
T 2yx1_A          197 DVVVDMFAGVGPFSIA-CKNAKKIYAIDINPHAIELLKKNIKLNKLEHKIIPILSDVREVD---VKGNRVIMNLPK--F-  269 (336)
T ss_dssp             CEEEETTCTTSHHHHH-TTTSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCC---CCEEEEEECCTT--T-
T ss_pred             CEEEEccCccCHHHHh-ccCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECChHHhc---CCCcEEEECCcH--h-
Confidence            4899999999999999 8766788888876311  11222333332   334455555554   899999974211  1 


Q ss_pred             ChhcHHHHHHHHHhcccCCcEEEEeeccCChhhHHHHHHHHHHc-CceeeEEEEe
Q 046488          402 DFVLLDFILYDWDRVLRPGGLLWIDSFFCAKEDMNDYLEVFKML-KYKKHKWVVV  455 (480)
Q Consensus       402 d~~~l~~~L~EI~RVLKPGG~fiI~~f~~~~edL~~~~~~l~~l-Gfkkl~W~~~  455 (480)
                       .   ..++.++.++|+|||++++..+...   .+...+.++.. |++...+...
T Consensus       270 -~---~~~l~~~~~~L~~gG~l~~~~~~~~---~~~~~~~l~~~~~~~i~~~~~v  317 (336)
T 2yx1_A          270 -A---HKFIDKALDIVEEGGVIHYYTIGKD---FDKAIKLFEKKCDCEVLEKRIV  317 (336)
T ss_dssp             -G---GGGHHHHHHHEEEEEEEEEEEEESS---SHHHHHHHHHHSEEEEEEEEEE
T ss_pred             -H---HHHHHHHHHHcCCCCEEEEEEeecC---chHHHHHHHHhcCCcEEEEEEE
Confidence             1   2479999999999999988766554   22333444444 5654444433

>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A

Probab=98.47  E-value=1.5e-07  Score=91.95  Aligned_cols=87  Identities=9%  Similarity=-0.063  Sum_probs=60.1

Q ss_pred             CCeEEEECCCCcHHHHHHhhCCCEEEEEecCCChhHHHHHHHhC-----------CCCeeeecccCCCCCCCccchheec
Q 046488          326 IRIGLDFSIGTGTFAARMREFNVTLVSAIINLGAPFNEMIALRG-----------LVPLYITINQRVPFFDNTLDLIHTT  394 (480)
Q Consensus       326 iR~VLDVGCGtG~fAa~Lae~gV~Vv~vd~d~~~~~~~~iA~rg-----------lip~~~~~ae~LPFpd~SFDlV~ss  394 (480)
                      .++|||||||+|.++..+++++..++.++++   +.....|++.           .+.+..+++..+.   ++||+|++.
T Consensus        73 ~~~VL~iG~G~G~~~~~ll~~~~~v~~veid---~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~~---~~fD~Ii~d  146 (262)
T 2cmg_A           73 LKEVLIVDGFDLELAHQLFKYDTHIDFVQAD---EKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDI---KKYDLIFCL  146 (262)
T ss_dssp             CCEEEEESSCCHHHHHHHTTSSCEEEEECSC---HHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSCC---CCEEEEEES
T ss_pred             CCEEEEEeCCcCHHHHHHHhCCCEEEEEECC---HHHHHHHHHHHHhhccccCCCeEEEEechHHHHH---hhCCEEEEC
Confidence            4689999999999999888776566666655   2222222221           2333445554443   889999985


Q ss_pred             ccccCccChhcHHHHHHHHHhcccCCcEEEEe
Q 046488          395 RFLDGWIDFVLLDFILYDWDRVLRPGGLLWID  426 (480)
Q Consensus       395 ~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~  426 (480)
                      .     .++.   .++.++.|+|||||.+++.
T Consensus       147 ~-----~dp~---~~~~~~~~~L~pgG~lv~~  170 (262)
T 2cmg_A          147 Q-----EPDI---HRIDGLKRMLKEDGVFISV  170 (262)
T ss_dssp             S-----CCCH---HHHHHHHTTEEEEEEEEEE
T ss_pred             C-----CChH---HHHHHHHHhcCCCcEEEEE
Confidence            2     2342   3899999999999999885

>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*

Probab=98.44  E-value=2.3e-06  Score=88.91  Aligned_cols=133  Identities=16%  Similarity=0.180  Sum_probs=80.8

Q ss_pred             CeEEEECCCCcHHHHHHhhCCCEEEEEecCCChhHHH----HHHHhCC--CCeeeecccC----CCCCCCccchheeccc
Q 046488          327 RIGLDFSIGTGTFAARMREFNVTLVSAIINLGAPFNE----MIALRGL--VPLYITINQR----VPFFDNTLDLIHTTRF  396 (480)
Q Consensus       327 R~VLDVGCGtG~fAa~Lae~gV~Vv~vd~d~~~~~~~----~iA~rgl--ip~~~~~ae~----LPFpd~SFDlV~ss~v  396 (480)
                      .+|||+|||+|.++..|++.+..+++++.+.  .+..    .+...+.  +.+..+++..    +|+++++||+|++.--
T Consensus       288 ~~VLDlgcG~G~~~~~la~~~~~V~gvD~s~--~al~~A~~n~~~~~~~~v~f~~~d~~~~l~~~~~~~~~fD~Vv~dPP  365 (433)
T 1uwv_A          288 DRVLDLFCGMGNFTLPLATQAASVVGVEGVP--ALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLDPA  365 (433)
T ss_dssp             CEEEEESCTTTTTHHHHHTTSSEEEEEESCH--HHHHHHHHHHHHTTCCSEEEEECCTTSCCSSSGGGTTCCSEEEECCC
T ss_pred             CEEEECCCCCCHHHHHHHhhCCEEEEEeCCH--HHHHHHHHHHHHcCCCceEEEECCHHHHhhhhhhhcCCCCEEEECCC
Confidence            4899999999999999999888898988763  2222    2222232  3345555444    5678889999997321


Q ss_pred             ccCccChhcHHHHHHHHHhcccCCcEEEEeeccCChhhHHHHHHHHHHcCceeeEEEEeeccCC-CCcceeEEEEEEe
Q 046488          397 LDGWIDFVLLDFILYDWDRVLRPGGLLWIDSFFCAKEDMNDYLEVFKMLKYKKHKWVVVPKRDK-DDREVFFSAVLEK  473 (480)
Q Consensus       397 L~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~f~~~~edL~~~~~~l~~lGfkkl~W~~~~k~d~-~~~E~~lsav~qK  473 (480)
                      .      .....++..+. -++|++.++++   |....+.+-...+...||+-........... ..-|.  .++++|
T Consensus       366 r------~g~~~~~~~l~-~~~p~~ivyvs---c~p~tlard~~~l~~~Gy~~~~~~~~d~Fp~t~HvE~--v~ll~r  431 (433)
T 1uwv_A          366 R------AGAAGVMQQII-KLEPIRIVYVS---CNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLES--MVLFSR  431 (433)
T ss_dssp             T------TCCHHHHHHHH-HHCCSEEEEEE---SCHHHHHHHHHHHHHTTCEEEEEEEECCSTTSSCCEE--EEEEEC
T ss_pred             C------ccHHHHHHHHH-hcCCCeEEEEE---CChHHHHhhHHHHHHCCcEEEEEEEeccCCCCCeEEE--EEEEEE
Confidence            1      11123444444 37999998884   4455554444566667887655444332222 22343  455655

>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45

Probab=98.41  E-value=1.8e-06  Score=86.53  Aligned_cols=120  Identities=14%  Similarity=0.026  Sum_probs=72.0

Q ss_pred             CCeEEEECCCCcHHHHHHhhCC-------CEEEEEecCCChh--HHHHHHHhCC-CCeeeecccCCCCCCCccchheecc
Q 046488          326 IRIGLDFSIGTGTFAARMREFN-------VTLVSAIINLGAP--FNEMIALRGL-VPLYITINQRVPFFDNTLDLIHTTR  395 (480)
Q Consensus       326 iR~VLDVGCGtG~fAa~Lae~g-------V~Vv~vd~d~~~~--~~~~iA~rgl-ip~~~~~ae~LPFpd~SFDlV~ss~  395 (480)
                      ..+|||+|||+|.++..++++.       ..+++++++...-  +...+...+. +.+..+++.. +.+++.||+|+++-
T Consensus       131 ~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g~~~~i~~~D~l~-~~~~~~fD~Ii~NP  209 (344)
T 2f8l_A          131 NVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQKMTLLHQDGLA-NLLVDPVDVVISDL  209 (344)
T ss_dssp             EEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCTTS-CCCCCCEEEEEEEC
T ss_pred             CCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCCCCceEEECCCCC-ccccCCccEEEECC
Confidence            3589999999999998887652       6778888763111  1112222333 2334444322 34568899999986


Q ss_pred             cccCccChhc--------------H-HHHHHHHHhcccCCcEEEEee---ccCChhhHHHHHHHHHHcCc
Q 046488          396 FLDGWIDFVL--------------L-DFILYDWDRVLRPGGLLWIDS---FFCAKEDMNDYLEVFKMLKY  447 (480)
Q Consensus       396 vL~h~~d~~~--------------l-~~~L~EI~RVLKPGG~fiI~~---f~~~~edL~~~~~~l~~lGf  447 (480)
                      -+.++...+.              . ..++.++.+.|||||++++..   ++... ....+.+.+...|+
T Consensus       210 Pfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~gG~~~~v~p~~~~~~~-~~~~ir~~l~~~~~  278 (344)
T 2f8l_A          210 PVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPDAMFGTS-DFAKVDKFIKKNGH  278 (344)
T ss_dssp             CCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEGGGGGST-THHHHHHHHHHHEE
T ss_pred             CCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhCCCCEEEEEECchhcCCc-hHHHHHHHHHhCCe
Confidence            6544432210              0 147999999999999988763   33222 22444455555444

>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*

Probab=98.41  E-value=4.3e-07  Score=89.36  Aligned_cols=95  Identities=13%  Similarity=0.106  Sum_probs=61.5

Q ss_pred             CeEEEECCCCcHHHHHHhhC-CCEEEEEecCCChhHHH----HHHHhCC---CCeeeecccCCCCCCCcc---chheec-
Q 046488          327 RIGLDFSIGTGTFAARMREF-NVTLVSAIINLGAPFNE----MIALRGL---VPLYITINQRVPFFDNTL---DLIHTT-  394 (480)
Q Consensus       327 R~VLDVGCGtG~fAa~Lae~-gV~Vv~vd~d~~~~~~~----~iA~rgl---ip~~~~~ae~LPFpd~SF---DlV~ss-  394 (480)
                      .+|||+|||+|.++..++.. +..+++++++.  .+..    .+...+.   +.++.++... +++ ++|   |+|+++ 
T Consensus       125 ~~vLDlG~GsG~~~~~la~~~~~~v~~vDis~--~al~~A~~n~~~~~l~~~v~~~~~D~~~-~~~-~~f~~~D~IvsnP  200 (284)
T 1nv8_A          125 KTVADIGTGSGAIGVSVAKFSDAIVFATDVSS--KAVEIARKNAERHGVSDRFFVRKGEFLE-PFK-EKFASIEMILSNP  200 (284)
T ss_dssp             CEEEEESCTTSHHHHHHHHHSSCEEEEEESCH--HHHHHHHHHHHHTTCTTSEEEEESSTTG-GGG-GGTTTCCEEEECC
T ss_pred             CEEEEEeCchhHHHHHHHHCCCCEEEEEECCH--HHHHHHHHHHHHcCCCCceEEEECcchh-hcc-cccCCCCEEEEcC
Confidence            37999999999999999987 77888888753  2222    2222232   3344454333 222 589   999996 


Q ss_pred             -----------ccccCccC------hhcHHHHHHHHH-hcccCCcEEEEee
Q 046488          395 -----------RFLDGWID------FVLLDFILYDWD-RVLRPGGLLWIDS  427 (480)
Q Consensus       395 -----------~vL~h~~d------~~~l~~~L~EI~-RVLKPGG~fiI~~  427 (480)
                                 .+. |.+.      .+. ..++.++. ++|||||++++..
T Consensus       201 Pyi~~~~~l~~~v~-~ep~~al~~~~dg-l~~~~~i~~~~l~pgG~l~~e~  249 (284)
T 1nv8_A          201 PYVKSSAHLPKDVL-FEPPEALFGGEDG-LDFYREFFGRYDTSGKIVLMEI  249 (284)
T ss_dssp             CCBCGGGSCTTSCC-CSCHHHHBCTTTS-CHHHHHHHHHCCCTTCEEEEEC
T ss_pred             CCCCcccccChhhc-cCcHHHhcCCCcH-HHHHHHHHHhcCCCCCEEEEEE
Confidence                       111 2111      000 15899999 9999999998853

>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24

Probab=98.39  E-value=6.6e-09  Score=99.26  Aligned_cols=104  Identities=14%  Similarity=0.065  Sum_probs=64.6

Q ss_pred             HhcCCCCCCCCeEEEECCCCcHHHHHHhhCCCEEEEEecCCChh--HHHHHHHhCCCCeeeecccCCCCCC-Cccchhee
Q 046488          317 EVLDIKPGEIRIGLDFSIGTGTFAARMREFNVTLVSAIINLGAP--FNEMIALRGLVPLYITINQRVPFFD-NTLDLIHT  393 (480)
Q Consensus       317 ~vL~l~~g~iR~VLDVGCGtG~fAa~Lae~gV~Vv~vd~d~~~~--~~~~iA~rglip~~~~~ae~LPFpd-~SFDlV~s  393 (480)
                      +.+++.++  .+|||+|||+|.++..+++++..+++++++....  +.........+.+..+++..+++++ ++| .|++
T Consensus        23 ~~~~~~~~--~~VLDiG~G~G~~~~~l~~~~~~v~~id~~~~~~~~a~~~~~~~~~v~~~~~D~~~~~~~~~~~f-~vv~   99 (245)
T 1yub_A           23 KQLNLKET--DTVYEIGTGKGHLTTKLAKISKQVTSIELDSHLFNLSSEKLKLNTRVTLIHQDILQFQFPNKQRY-KIVG   99 (245)
T ss_dssp             HHCCCCSS--EEEEECSCCCSSCSHHHHHHSSEEEESSSSCSSSSSSSCTTTTCSEEEECCSCCTTTTCCCSSEE-EEEE
T ss_pred             HhcCCCCC--CEEEEEeCCCCHHHHHHHHhCCeEEEEECCHHHHHHHHHHhccCCceEEEECChhhcCcccCCCc-EEEE
Confidence            44455444  4899999999999999999888888888763211  1111110112334556678888874 789 5555


Q ss_pred             cc-----------cccCccChhcHHHHH----HHHHhcccCCcEEEEe
Q 046488          394 TR-----------FLDGWIDFVLLDFIL----YDWDRVLRPGGLLWID  426 (480)
Q Consensus       394 s~-----------vL~h~~d~~~l~~~L----~EI~RVLKPGG~fiI~  426 (480)
                      +-           .+.|+....   .++    .++.|+|||||.+.+.
T Consensus       100 n~Py~~~~~~~~~~~~~~~~~~---~~lm~q~e~a~rll~~~G~l~v~  144 (245)
T 1yub_A          100 NIPYHLSTQIIKKVVFESRASD---IYLIVEEGFYKRTLDIHRTLGLL  144 (245)
T ss_dssp             ECCSSSCHHHHHHHHHHCCCEE---EEEEEESSHHHHHHCGGGSHHHH
T ss_pred             eCCccccHHHHHHHHhCCCCCe---EEEEeeHHHHHHHhCCCCchhhh
Confidence            31           112222221   244    6699999999987653

>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}

Probab=98.36  E-value=2.1e-06  Score=88.84  Aligned_cols=119  Identities=16%  Similarity=0.003  Sum_probs=70.8

Q ss_pred             CeEEEECCCCcHHHHHHhhCCCEEEEEecCCChhHHH----HHHHhCCC-CeeeecccC-CCCCCCccchheecccccCc
Q 046488          327 RIGLDFSIGTGTFAARMREFNVTLVSAIINLGAPFNE----MIALRGLV-PLYITINQR-VPFFDNTLDLIHTTRFLDGW  400 (480)
Q Consensus       327 R~VLDVGCGtG~fAa~Lae~gV~Vv~vd~d~~~~~~~----~iA~rgli-p~~~~~ae~-LPFpd~SFDlV~ss~vL~h~  400 (480)
                      .+|||+|||||.++..++..|..|+++|++.  .+..    .++..+.- .+..+++.. ++...+.||+|++.--....
T Consensus       216 ~~VLDlg~GtG~~sl~~a~~ga~V~avDis~--~al~~a~~n~~~ng~~~~~~~~D~~~~l~~~~~~fD~Ii~dpP~f~~  293 (393)
T 4dmg_A          216 ERVLDVYSYVGGFALRAARKGAYALAVDKDL--EALGVLDQAALRLGLRVDIRHGEALPTLRGLEGPFHHVLLDPPTLVK  293 (393)
T ss_dssp             CEEEEESCTTTHHHHHHHHTTCEEEEEESCH--HHHHHHHHHHHHHTCCCEEEESCHHHHHHTCCCCEEEEEECCCCCCS
T ss_pred             CeEEEcccchhHHHHHHHHcCCeEEEEECCH--HHHHHHHHHHHHhCCCCcEEEccHHHHHHHhcCCCCEEEECCCcCCC
Confidence            4899999999999999999988888888653  2322    23333432 233344322 33324449999974221000


Q ss_pred             cC------hhcHHHHHHHHHhcccCCcEEEEeeccCC--hhhH-HHHHHHHHHcCc
Q 046488          401 ID------FVLLDFILYDWDRVLRPGGLLWIDSFFCA--KEDM-NDYLEVFKMLKY  447 (480)
Q Consensus       401 ~d------~~~l~~~L~EI~RVLKPGG~fiI~~f~~~--~edL-~~~~~~l~~lGf  447 (480)
                      ..      ......++.++.|+|||||++++......  .++. +.+...+...|.
T Consensus       294 ~~~~~~~~~~~~~~ll~~a~~~LkpGG~Lv~~s~s~~~~~~~f~~~v~~a~~~~g~  349 (393)
T 4dmg_A          294 RPEELPAMKRHLVDLVREALRLLAEEGFLWLSSCSYHLRLEDLLEVARRAAADLGR  349 (393)
T ss_dssp             SGGGHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSCHHHHHHHHHHHHHHHTC
T ss_pred             CHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHHHHhCC
Confidence            00      01124688999999999999986543222  2222 334455555554

>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A

Probab=98.35  E-value=3.7e-07  Score=87.69  Aligned_cols=61  Identities=8%  Similarity=0.046  Sum_probs=43.4

Q ss_pred             CeEEEECCCCcHHHHHHhhCCCEEEEEecCCChhHHHHHHHh----CCCCeeeecccCCCCCC-Cccc
Q 046488          327 RIGLDFSIGTGTFAARMREFNVTLVSAIINLGAPFNEMIALR----GLVPLYITINQRVPFFD-NTLD  389 (480)
Q Consensus       327 R~VLDVGCGtG~fAa~Lae~gV~Vv~vd~d~~~~~~~~iA~r----glip~~~~~ae~LPFpd-~SFD  389 (480)
                      .+|||+|||+|.++..|++++..+++++++.  .+...+..+    ..+.++.+++..+++++ ..|+
T Consensus        32 ~~VLDiG~G~G~lt~~l~~~~~~v~~vD~~~--~~~~~a~~~~~~~~~v~~~~~D~~~~~~~~~~~~~   97 (244)
T 1qam_A           32 DNIFEIGSGKGHFTLELVQRCNFVTAIEIDH--KLCKTTENKLVDHDNFQVLNKDILQFKFPKNQSYK   97 (244)
T ss_dssp             CEEEEECCTTSHHHHHHHHHSSEEEEECSCH--HHHHHHHHHTTTCCSEEEECCCGGGCCCCSSCCCE
T ss_pred             CEEEEEeCCchHHHHHHHHcCCeEEEEECCH--HHHHHHHHhhccCCCeEEEEChHHhCCcccCCCeE
Confidence            4899999999999999999888888888762  333322221    23445667788888875 4564

>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*

Probab=98.34  E-value=1.3e-06  Score=89.54  Aligned_cols=122  Identities=11%  Similarity=-0.011  Sum_probs=74.1

Q ss_pred             CeEEEECCCCcHHHHHHhhCCC-EEEEEecCCChh--HHHHHHHhCC----CCeeeecccC-CCC---CCCccchheecc
Q 046488          327 RIGLDFSIGTGTFAARMREFNV-TLVSAIINLGAP--FNEMIALRGL----VPLYITINQR-VPF---FDNTLDLIHTTR  395 (480)
Q Consensus       327 R~VLDVGCGtG~fAa~Lae~gV-~Vv~vd~d~~~~--~~~~iA~rgl----ip~~~~~ae~-LPF---pd~SFDlV~ss~  395 (480)
                      .+|||+|||+|.++..++..|. .|++++++..+-  +...++..+.    +.++.+++.. ++.   ..++||+|++.-
T Consensus       214 ~~VLDl~cGtG~~sl~la~~ga~~V~~vD~s~~al~~A~~N~~~n~~~~~~v~~~~~D~~~~l~~~~~~~~~fD~Ii~DP  293 (385)
T 2b78_A          214 KTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDIIIIDP  293 (385)
T ss_dssp             CEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEEEECC
T ss_pred             CeEEEEeeccCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHHhCCCccEEEECC
Confidence            4899999999999999998775 788888764322  2222333332    2234444332 332   256899999842


Q ss_pred             cc-----cCccC-hhcHHHHHHHHHhcccCCcEEEEeeccCC--hhhH-HHHHHHHHHcCce
Q 046488          396 FL-----DGWID-FVLLDFILYDWDRVLRPGGLLWIDSFFCA--KEDM-NDYLEVFKMLKYK  448 (480)
Q Consensus       396 vL-----~h~~d-~~~l~~~L~EI~RVLKPGG~fiI~~f~~~--~edL-~~~~~~l~~lGfk  448 (480)
                      -.     ....+ ...+..++.++.++|+|||++++......  .+.. +.+.+.+...|.+
T Consensus       294 P~~~~~~~~~~~~~~~~~~ll~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~i~~~~~~~g~~  355 (385)
T 2b78_A          294 PSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNAANMTVSQFKKQIEKGFGKQKHT  355 (385)
T ss_dssp             CCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSCHHHHHHHHHHHHTTCCCE
T ss_pred             CCCCCChhhHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCcCCHHHHHHHHHHHHHHcCCc
Confidence            11     11111 11224577888999999999998753322  2222 3345666677766

>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*

Probab=98.34  E-value=5.4e-06  Score=84.05  Aligned_cols=114  Identities=21%  Similarity=0.148  Sum_probs=70.1

Q ss_pred             CeEEEECCCCcHHHHHHhhC---CCEEEEEecCCChhHHHHHHHhCCCCeeeecccCCCCCCCccchheeccccc--C--
Q 046488          327 RIGLDFSIGTGTFAARMREF---NVTLVSAIINLGAPFNEMIALRGLVPLYITINQRVPFFDNTLDLIHTTRFLD--G--  399 (480)
Q Consensus       327 R~VLDVGCGtG~fAa~Lae~---gV~Vv~vd~d~~~~~~~~iA~rglip~~~~~ae~LPFpd~SFDlV~ss~vL~--h--  399 (480)
                      .+|||+|||+|.++..++++   +..+++++++..+..   .|  ..+.+..++...++ +++.||+|+++=-+.  .  
T Consensus        41 ~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~---~a--~~~~~~~~D~~~~~-~~~~fD~Ii~NPPy~~~~~~  114 (421)
T 2ih2_A           41 GRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALD---LP--PWAEGILADFLLWE-PGEAFDLILGNPPYGIVGEA  114 (421)
T ss_dssp             CEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCC---CC--TTEEEEESCGGGCC-CSSCEEEEEECCCCCCBSCT
T ss_pred             CEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHH---hC--CCCcEEeCChhhcC-ccCCCCEEEECcCccCcccc
Confidence            38999999999999999874   567888887642211   11  22344555544443 357899999951111  0  


Q ss_pred             ------ccChh----------------cHHHHHHHHHhcccCCcEEEEee---ccCChhhHHHHHHHHHHcCc
Q 046488          400 ------WIDFV----------------LLDFILYDWDRVLRPGGLLWIDS---FFCAKEDMNDYLEVFKMLKY  447 (480)
Q Consensus       400 ------~~d~~----------------~l~~~L~EI~RVLKPGG~fiI~~---f~~~~edL~~~~~~l~~lGf  447 (480)
                            +.+..                ....++..+.++|||||++++..   |... ...+.+.+.+...|+
T Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~~G~~~~i~p~~~l~~-~~~~~lr~~l~~~~~  186 (421)
T 2ih2_A          115 SKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPATWLVL-EDFALLREFLAREGK  186 (421)
T ss_dssp             TTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEGGGGTC-GGGHHHHHHHHHHSE
T ss_pred             cccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCCCCEEEEEEChHHhcC-ccHHHHHHHHHhcCC
Confidence                  11110                01256889999999999988752   3322 223445566666666

>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*

Probab=98.31  E-value=1.3e-06  Score=86.61  Aligned_cols=119  Identities=17%  Similarity=0.194  Sum_probs=76.9

Q ss_pred             CCCCCCCeEEEECCCCcHHHHHHhhCC-CEEEEEecCCCh--hHHHHHHHhCC---CCeeeecccCCCCCCCccchheec
Q 046488          321 IKPGEIRIGLDFSIGTGTFAARMREFN-VTLVSAIINLGA--PFNEMIALRGL---VPLYITINQRVPFFDNTLDLIHTT  394 (480)
Q Consensus       321 l~~g~iR~VLDVGCGtG~fAa~Lae~g-V~Vv~vd~d~~~--~~~~~iA~rgl---ip~~~~~ae~LPFpd~SFDlV~ss  394 (480)
                      +++|+  +|||+|||+|.|+..++.+| ..|++++++..+  -+.+.+...+.   +.++.+++..++ ..+.||.|++.
T Consensus       123 ~~~g~--~VlD~~aG~G~~~i~~a~~g~~~V~avD~np~a~~~~~~N~~~N~v~~~v~~~~~D~~~~~-~~~~~D~Vi~~  199 (278)
T 3k6r_A          123 AKPDE--LVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFP-GENIADRILMG  199 (278)
T ss_dssp             CCTTC--EEEETTCTTTTTTHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCC-CCSCEEEEEEC
T ss_pred             cCCCC--EEEEecCcCcHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCcHHHhc-cccCCCEEEEC
Confidence            34564  89999999999999999886 578888876321  11223333343   234456666665 36789998864


Q ss_pred             ccccCccChhcHHHHHHHHHhcccCCcEEEEeeccCCh----hhHHHHHHHHHHcCcee
Q 046488          395 RFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDSFFCAK----EDMNDYLEVFKMLKYKK  449 (480)
Q Consensus       395 ~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~f~~~~----edL~~~~~~l~~lGfkk  449 (480)
                      .-     ...  ..++.++.++|||||++.+..+....    +..+.+...++..|++-
T Consensus       200 ~p-----~~~--~~~l~~a~~~lk~gG~ih~~~~~~e~~~~~~~~e~i~~~~~~~g~~v  251 (278)
T 3k6r_A          200 YV-----VRT--HEFIPKALSIAKDGAIIHYHNTVPEKLMPREPFETFKRITKEYGYDV  251 (278)
T ss_dssp             CC-----SSG--GGGHHHHHHHEEEEEEEEEEEEEEGGGTTTTTHHHHHHHHHHTTCEE
T ss_pred             CC-----CcH--HHHHHHHHHHcCCCCEEEEEeeecccccchhHHHHHHHHHHHcCCcE
Confidence            21     111  23788889999999998765443222    12355667788888763

>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}

Probab=98.29  E-value=1.4e-06  Score=86.31  Aligned_cols=98  Identities=15%  Similarity=0.156  Sum_probs=60.2

Q ss_pred             HhcCCCCCCCCeEEEECCCCcHHHHHHhhCCCEEEEEecCCChhHHHH----HHHhCC--CCeeeecccCCCCCCCccch
Q 046488          317 EVLDIKPGEIRIGLDFSIGTGTFAARMREFNVTLVSAIINLGAPFNEM----IALRGL--VPLYITINQRVPFFDNTLDL  390 (480)
Q Consensus       317 ~vL~l~~g~iR~VLDVGCGtG~fAa~Lae~gV~Vv~vd~d~~~~~~~~----iA~rgl--ip~~~~~ae~LPFpd~SFDl  390 (480)
                      +.+++.++  .+|||+|||+|.++..|++++..+++++++.  .+...    ....+.  +.++.+++..+++  .+||+
T Consensus        36 ~~~~~~~~--~~VLDiG~G~G~lt~~La~~~~~v~~vDi~~--~~~~~a~~~~~~~~~~~v~~~~~D~~~~~~--~~~D~  109 (299)
T 2h1r_A           36 YAAKIKSS--DIVLEIGCGTGNLTVKLLPLAKKVITIDIDS--RMISEVKKRCLYEGYNNLEVYEGDAIKTVF--PKFDV  109 (299)
T ss_dssp             HHHCCCTT--CEEEEECCTTSTTHHHHTTTSSEEEEECSCH--HHHHHHHHHHHHTTCCCEEC----CCSSCC--CCCSE
T ss_pred             HhcCCCCc--CEEEEEcCcCcHHHHHHHhcCCEEEEEECCH--HHHHHHHHHHHHcCCCceEEEECchhhCCc--ccCCE
Confidence            34455444  4899999999999999999888898888763  22222    222222  3344566666665  48999


Q ss_pred             heecccccCccChhcHHHHH---------------HHHHhcccCCcE
Q 046488          391 IHTTRFLDGWIDFVLLDFIL---------------YDWDRVLRPGGL  422 (480)
Q Consensus       391 V~ss~vL~h~~d~~~l~~~L---------------~EI~RVLKPGG~  422 (480)
                      |+++... +|..+. +..++               ..+.|+++|+|.
T Consensus       110 Vv~n~py-~~~~~~-~~~ll~~~~~~~~~~l~~Q~e~a~rlla~~G~  154 (299)
T 2h1r_A          110 CTANIPY-KISSPL-IFKLISHRPLFKCAVLMFQKEFAERMLANVGD  154 (299)
T ss_dssp             EEEECCG-GGHHHH-HHHHHHCSSCCSEEEEEEEHHHHHHHTCCTTS
T ss_pred             EEEcCCc-ccccHH-HHHHHhcCCccceeeehHHHHHHHHHhcCCCC
Confidence            9986443 343332 12333               346788888884

>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51

Probab=98.28  E-value=9.9e-07  Score=90.13  Aligned_cols=102  Identities=15%  Similarity=0.039  Sum_probs=64.0

Q ss_pred             CeEEEECCCCcHHHHHHhhCCC-EEEEEecCCCh--hHHHHHHHhCC---CCeeeecccCC-CC---CCCccchheeccc
Q 046488          327 RIGLDFSIGTGTFAARMREFNV-TLVSAIINLGA--PFNEMIALRGL---VPLYITINQRV-PF---FDNTLDLIHTTRF  396 (480)
Q Consensus       327 R~VLDVGCGtG~fAa~Lae~gV-~Vv~vd~d~~~--~~~~~iA~rgl---ip~~~~~ae~L-PF---pd~SFDlV~ss~v  396 (480)
                      .+|||+|||+|.++..++..|. .+++++++..+  .+...+...+.   +.++.+++..+ +.   .+++||+|++.--
T Consensus       219 ~~VLDl~~G~G~~~~~la~~g~~~v~~vD~s~~~l~~a~~n~~~n~~~~~v~~~~~d~~~~~~~~~~~~~~fD~Vi~dpP  298 (396)
T 2as0_A          219 DRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVVLDPP  298 (396)
T ss_dssp             CEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEECCC
T ss_pred             CeEEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEECCHHHHHHHHHhhCCCCCEEEECCC
Confidence            4899999999999999999865 78888875311  11122233332   23344443333 21   3679999998421


Q ss_pred             ccCccC------hhcHHHHHHHHHhcccCCcEEEEeec
Q 046488          397 LDGWID------FVLLDFILYDWDRVLRPGGLLWIDSF  428 (480)
Q Consensus       397 L~h~~d------~~~l~~~L~EI~RVLKPGG~fiI~~f  428 (480)
                      ......      ......++.++.++|||||++++...
T Consensus       299 ~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~  336 (396)
T 2as0_A          299 AFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSC  336 (396)
T ss_dssp             CSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEEC
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEC
Confidence            111000      01235689999999999999888753

>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}

Probab=98.28  E-value=6.8e-07  Score=91.47  Aligned_cols=122  Identities=15%  Similarity=-0.050  Sum_probs=72.1

Q ss_pred             CeEEEECCCCcHHHHHHhhCCC-EEEEEecCCCh--hHHHHHHHhCC----CCeeeecccCC-CC---CCCccchheecc
Q 046488          327 RIGLDFSIGTGTFAARMREFNV-TLVSAIINLGA--PFNEMIALRGL----VPLYITINQRV-PF---FDNTLDLIHTTR  395 (480)
Q Consensus       327 R~VLDVGCGtG~fAa~Lae~gV-~Vv~vd~d~~~--~~~~~iA~rgl----ip~~~~~ae~L-PF---pd~SFDlV~ss~  395 (480)
                      .+|||+|||+|.++..++..|. .+++++++..+  .+...+...+.    +.++.+++..+ +.   .+++||+|++.-
T Consensus       222 ~~VLDl~cG~G~~sl~la~~g~~~V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~~~D~~~~~~~~~~~~~~fD~Ii~dp  301 (396)
T 3c0k_A          222 KRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIVMDP  301 (396)
T ss_dssp             CEEEEESCTTCSHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCHHHHHHHHHHTTCCEEEEEECC
T ss_pred             CeEEEeeccCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHhcCCCCCEEEECC
Confidence            4899999999999999999864 78888876311  11122222232    22344443332 21   257899999852


Q ss_pred             ccc-----Ccc-ChhcHHHHHHHHHhcccCCcEEEEeeccCC--hhhH-HHHHHHHHHcCce
Q 046488          396 FLD-----GWI-DFVLLDFILYDWDRVLRPGGLLWIDSFFCA--KEDM-NDYLEVFKMLKYK  448 (480)
Q Consensus       396 vL~-----h~~-d~~~l~~~L~EI~RVLKPGG~fiI~~f~~~--~edL-~~~~~~l~~lGfk  448 (480)
                      -..     ++. .......++.++.++|||||++++......  .++. +.+.+.+...|+.
T Consensus       302 P~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~i~~~~~~~g~~  363 (396)
T 3c0k_A          302 PKFVENKSQLMGACRGYKDINMLAIQLLNEGGILLTFSCSGLMTSDLFQKIIADAAIDAGRD  363 (396)
T ss_dssp             SSTTTCSSSSSCCCTHHHHHHHHHHHTEEEEEEEEEEECCTTCCHHHHHHHHHHHHHHHTCC
T ss_pred             CCCCCChhHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCcCCHHHHHHHHHHHHHHcCCe
Confidence            110     000 012235689999999999999998643221  2222 3344566666743

>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*

Probab=98.27  E-value=8.9e-07  Score=90.26  Aligned_cols=121  Identities=17%  Similarity=0.016  Sum_probs=71.4

Q ss_pred             CeEEEECCCCcHHHHHHhhCCCEEEEEecCCCh--hHHHHHHHhCC--CCeeeecccCC-CC---CCCccchheeccccc
Q 046488          327 RIGLDFSIGTGTFAARMREFNVTLVSAIINLGA--PFNEMIALRGL--VPLYITINQRV-PF---FDNTLDLIHTTRFLD  398 (480)
Q Consensus       327 R~VLDVGCGtG~fAa~Lae~gV~Vv~vd~d~~~--~~~~~iA~rgl--ip~~~~~ae~L-PF---pd~SFDlV~ss~vL~  398 (480)
                      .+|||+|||+|.++..++..+..+++++++..+  .+...+...+.  +.++.+++..+ +.   .+++||+|++.--..
T Consensus       211 ~~VLDlg~G~G~~~~~la~~~~~v~~vD~s~~~~~~a~~n~~~n~~~~~~~~~~d~~~~~~~~~~~~~~fD~Ii~dpP~~  290 (382)
T 1wxx_A          211 ERALDVFSYAGGFALHLALGFREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVLDPPAF  290 (382)
T ss_dssp             EEEEEETCTTTHHHHHHHHHEEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEECCCCS
T ss_pred             CeEEEeeeccCHHHHHHHHhCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEECCHHHHHHHHHhcCCCeeEEEECCCCC
Confidence            489999999999999999876677888765211  11122233333  23444444332 21   267999999742111


Q ss_pred             CccC------hhcHHHHHHHHHhcccCCcEEEEeeccCC--hhhH-HHHHHHHHHcCc
Q 046488          399 GWID------FVLLDFILYDWDRVLRPGGLLWIDSFFCA--KEDM-NDYLEVFKMLKY  447 (480)
Q Consensus       399 h~~d------~~~l~~~L~EI~RVLKPGG~fiI~~f~~~--~edL-~~~~~~l~~lGf  447 (480)
                      ....      ......++.++.++|||||++++......  .+.. +.+.+.+...|.
T Consensus       291 ~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~i~~~~~~~g~  348 (382)
T 1wxx_A          291 AKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCSHHMTEPLFYAMVAEAAQDAHR  348 (382)
T ss_dssp             CCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSCHHHHHHHHHHHHHHTTC
T ss_pred             CCChhHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHHHHcCC
Confidence            1000      01235689999999999999988753322  2222 234456666653

>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*

Probab=98.21  E-value=2.6e-06  Score=88.86  Aligned_cols=105  Identities=15%  Similarity=0.187  Sum_probs=64.1

Q ss_pred             hhhHHHhcCCCCCCCCeEEEECCCCcHHHHHHhhCCCEEEEEecCCCh--hHHHHHHHhCC-CCeeeecccCCCCCCCcc
Q 046488          312 DFLIPEVLDIKPGEIRIGLDFSIGTGTFAARMREFNVTLVSAIINLGA--PFNEMIALRGL-VPLYITINQRVPFFDNTL  388 (480)
Q Consensus       312 d~~I~~vL~l~~g~iR~VLDVGCGtG~fAa~Lae~gV~Vv~vd~d~~~--~~~~~iA~rgl-ip~~~~~ae~LPFpd~SF  388 (480)
                      +.++..++.+.++  .+|||+|||+|.++..|++.+..+++++.+..+  .+...+...+. +.+..++++.++.  .+|
T Consensus       279 e~l~~~~~~~~~~--~~VLDlgcG~G~~sl~la~~~~~V~gvD~s~~ai~~A~~n~~~ngl~v~~~~~d~~~~~~--~~f  354 (425)
T 2jjq_A          279 VNLVRKVSELVEG--EKILDMYSGVGTFGIYLAKRGFNVKGFDSNEFAIEMARRNVEINNVDAEFEVASDREVSV--KGF  354 (425)
T ss_dssp             HHHHHHHHHHCCS--SEEEEETCTTTHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCCEEEEECCTTTCCC--TTC
T ss_pred             HHHHHHhhccCCC--CEEEEeeccchHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEECChHHcCc--cCC
Confidence            3344444443333  489999999999999999988889888876311  11112222232 3344555655542  289


Q ss_pred             chheecccccCccChhcHHHHHHHHHhcccCCcEEEEe
Q 046488          389 DLIHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWID  426 (480)
Q Consensus       389 DlV~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~  426 (480)
                      |+|++.--....   .  ..++..+ +.|+|||.++++
T Consensus       355 D~Vv~dPPr~g~---~--~~~~~~l-~~l~p~givyvs  386 (425)
T 2jjq_A          355 DTVIVDPPRAGL---H--PRLVKRL-NREKPGVIVYVS  386 (425)
T ss_dssp             SEEEECCCTTCS---C--HHHHHHH-HHHCCSEEEEEE
T ss_pred             CEEEEcCCccch---H--HHHHHHH-HhcCCCcEEEEE
Confidence            999974321111   1  2245555 469999999885

>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A*

Probab=98.19  E-value=2.9e-06  Score=83.40  Aligned_cols=107  Identities=14%  Similarity=-0.056  Sum_probs=69.3

Q ss_pred             hHHHhcCCCCCCCCeEEEECCCCcHHHHHHhhCCCEEEEEecCCChh-HHHHHHHhCCCCee--eecccCCCCCCCccch
Q 046488          314 LIPEVLDIKPGEIRIGLDFSIGTGTFAARMREFNVTLVSAIINLGAP-FNEMIALRGLVPLY--ITINQRVPFFDNTLDL  390 (480)
Q Consensus       314 ~I~~vL~l~~g~iR~VLDVGCGtG~fAa~Lae~gV~Vv~vd~d~~~~-~~~~iA~rglip~~--~~~ae~LPFpd~SFDl  390 (480)
                      +...++..  +...+|||+|||+|.++..+. .+..++++|++...- .....+...+.+..  +.+...-|. ..+||+
T Consensus        96 fY~~i~~~--~~p~~VLDlGCG~gpLal~~~-~~~~y~a~DId~~~i~~ar~~~~~~g~~~~~~v~D~~~~~~-~~~~Dv  171 (253)
T 3frh_A           96 LYDFIFSA--ETPRRVLDIACGLNPLALYER-GIASVWGCDIHQGLGDVITPFAREKDWDFTFALQDVLCAPP-AEAGDL  171 (253)
T ss_dssp             HHHHHTSS--CCCSEEEEETCTTTHHHHHHT-TCSEEEEEESBHHHHHHHHHHHHHTTCEEEEEECCTTTSCC-CCBCSE
T ss_pred             HHHHHhcC--CCCCeEEEecCCccHHHHHhc-cCCeEEEEeCCHHHHHHHHHHHHhcCCCceEEEeecccCCC-CCCcch
Confidence            34456666  335689999999999999888 566788888763111 11222333334433  334444444 459999


Q ss_pred             heecccccCccChhcHHHHHHHHHhcccCCcEEEEe
Q 046488          391 IHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWID  426 (480)
Q Consensus       391 V~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~  426 (480)
                      |++.-+++++.+... . ...++...|+|+|.++-.
T Consensus       172 vLllk~lh~LE~q~~-~-~~~~ll~aL~~~~vvVsf  205 (253)
T 3frh_A          172 ALIFKLLPLLEREQA-G-SAMALLQSLNTPRMAVSF  205 (253)
T ss_dssp             EEEESCHHHHHHHST-T-HHHHHHHHCBCSEEEEEE
T ss_pred             HHHHHHHHHhhhhch-h-hHHHHHHHhcCCCEEEEc
Confidence            999877777754332 3 444889999999987754

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=98.17  E-value=8.2e-07  Score=98.18  Aligned_cols=116  Identities=18%  Similarity=0.106  Sum_probs=71.6

Q ss_pred             CeEEEECCCCcHHHHHHhhCCCE-EEEEecCCChhHHH----HHHHhCC----CCeeeeccc-CCCCCCCccchheeccc
Q 046488          327 RIGLDFSIGTGTFAARMREFNVT-LVSAIINLGAPFNE----MIALRGL----VPLYITINQ-RVPFFDNTLDLIHTTRF  396 (480)
Q Consensus       327 R~VLDVGCGtG~fAa~Lae~gV~-Vv~vd~d~~~~~~~----~iA~rgl----ip~~~~~ae-~LPFpd~SFDlV~ss~v  396 (480)
                      .+|||+|||||.++..++..|.. |+++|++.  .+..    .++..+.    +.++.+++. -++..+++||+|++.--
T Consensus       541 ~~VLDlg~GtG~~sl~aa~~ga~~V~aVD~s~--~al~~a~~N~~~ngl~~~~v~~i~~D~~~~l~~~~~~fD~Ii~DPP  618 (703)
T 3v97_A          541 KDFLNLFSYTGSATVHAGLGGARSTTTVDMSR--TYLEWAERNLRLNGLTGRAHRLIQADCLAWLREANEQFDLIFIDPP  618 (703)
T ss_dssp             CEEEEESCTTCHHHHHHHHTTCSEEEEEESCH--HHHHHHHHHHHHTTCCSTTEEEEESCHHHHHHHCCCCEEEEEECCC
T ss_pred             CcEEEeeechhHHHHHHHHCCCCEEEEEeCCH--HHHHHHHHHHHHcCCCccceEEEecCHHHHHHhcCCCccEEEECCc
Confidence            48999999999999999987764 88887653  2222    2333332    223444433 35556789999998421


Q ss_pred             -cc-------CccChhcHHHHHHHHHhcccCCcEEEEeeccC-ChhhHHHHHHHHHHcCce
Q 046488          397 -LD-------GWIDFVLLDFILYDWDRVLRPGGLLWIDSFFC-AKEDMNDYLEVFKMLKYK  448 (480)
Q Consensus       397 -L~-------h~~d~~~l~~~L~EI~RVLKPGG~fiI~~f~~-~~edL~~~~~~l~~lGfk  448 (480)
                       +.       .+........++.++.++|||||+++++.-.. ...+    .+.++..|++
T Consensus       619 ~f~~~~~~~~~~~~~~~~~~ll~~a~~~LkpgG~L~~s~~~~~~~~~----~~~l~~~g~~  675 (703)
T 3v97_A          619 TFSNSKRMEDAFDVQRDHLALMKDLKRLLRAGGTIMFSNNKRGFRMD----LDGLAKLGLK  675 (703)
T ss_dssp             SBC-------CCBHHHHHHHHHHHHHHHEEEEEEEEEEECCTTCCCC----HHHHHHTTEE
T ss_pred             cccCCccchhHHHHHHHHHHHHHHHHHhcCCCcEEEEEECCcccccC----HHHHHHcCCc
Confidence             10       01111123568999999999999999864211 1112    2455666765

>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A*

Probab=98.12  E-value=2.2e-06  Score=85.26  Aligned_cols=108  Identities=12%  Similarity=0.024  Sum_probs=71.2

Q ss_pred             hHHHhcCCCCCCCCeEEEECCCCcHHHHHHhhC--CCEEEEEecCCChhHHH---HHHHhCCCCeeeec-ccCCCCCCCc
Q 046488          314 LIPEVLDIKPGEIRIGLDFSIGTGTFAARMREF--NVTLVSAIINLGAPFNE---MIALRGLVPLYITI-NQRVPFFDNT  387 (480)
Q Consensus       314 ~I~~vL~l~~g~iR~VLDVGCGtG~fAa~Lae~--gV~Vv~vd~d~~~~~~~---~iA~rglip~~~~~-ae~LPFpd~S  387 (480)
                      +...++..-+. ..+|||+|||+|-++..++..  ...++++|+|.  .+.+   ..+...+++..... -....-+...
T Consensus       122 fY~~i~~~i~~-p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~--~~le~a~~~l~~~g~~~~~~v~D~~~~~p~~~  198 (281)
T 3lcv_B          122 FYRELFRHLPR-PNTLRDLACGLNPLAAPWMGLPAETVYIASDIDA--RLVGFVDEALTRLNVPHRTNVADLLEDRLDEP  198 (281)
T ss_dssp             HHHHHGGGSCC-CSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBH--HHHHHHHHHHHHTTCCEEEEECCTTTSCCCSC
T ss_pred             HHHHHHhccCC-CceeeeeccCccHHHHHHHhhCCCCEEEEEeCCH--HHHHHHHHHHHhcCCCceEEEeeecccCCCCC
Confidence            34445553332 568999999999999988765  45777777763  2322   22233334433322 2233446888


Q ss_pred             cchheecccccCccChhcHHHHHHHHHhcccCCcEEEEe
Q 046488          388 LDLIHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWID  426 (480)
Q Consensus       388 FDlV~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~  426 (480)
                      ||+|++.-+++++.+... +..+ ++...|+|||.|+-.
T Consensus       199 ~DvaL~lkti~~Le~q~k-g~g~-~ll~aL~~~~vvVSf  235 (281)
T 3lcv_B          199 ADVTLLLKTLPCLETQQR-GSGW-EVIDIVNSPNIVVTF  235 (281)
T ss_dssp             CSEEEETTCHHHHHHHST-THHH-HHHHHSSCSEEEEEE
T ss_pred             cchHHHHHHHHHhhhhhh-HHHH-HHHHHhCCCCEEEec
Confidence            999999999888765442 3455 999999999998764

>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*

Probab=98.04  E-value=5.9e-06  Score=82.52  Aligned_cols=78  Identities=10%  Similarity=0.114  Sum_probs=55.7

Q ss_pred             HhcCCCCCCCCeEEEECCCCcHHHHHHhhCCCEEEEEecCCCh--hHHHHHHHhCCCCeeeecccCCCCCCCccchheec
Q 046488          317 EVLDIKPGEIRIGLDFSIGTGTFAARMREFNVTLVSAIINLGA--PFNEMIALRGLVPLYITINQRVPFFDNTLDLIHTT  394 (480)
Q Consensus       317 ~vL~l~~g~iR~VLDVGCGtG~fAa~Lae~gV~Vv~vd~d~~~--~~~~~iA~rglip~~~~~ae~LPFpd~SFDlV~ss  394 (480)
                      +.+++.++  .+|||||||+|.++..|++++..+++++++...  .+...++....+.++.+++..+++++.+||+|+++
T Consensus        44 ~~l~~~~~--~~VLEIG~G~G~lT~~La~~~~~V~aVEid~~li~~a~~~~~~~~~v~vi~gD~l~~~~~~~~fD~Iv~N  121 (295)
T 3gru_A           44 ESANLTKD--DVVLEIGLGKGILTEELAKNAKKVYVIEIDKSLEPYANKLKELYNNIEIIWGDALKVDLNKLDFNKVVAN  121 (295)
T ss_dssp             HHTTCCTT--CEEEEECCTTSHHHHHHHHHSSEEEEEESCGGGHHHHHHHHHHCSSEEEEESCTTTSCGGGSCCSEEEEE
T ss_pred             HhcCCCCc--CEEEEECCCchHHHHHHHhcCCEEEEEECCHHHHHHHHHHhccCCCeEEEECchhhCCcccCCccEEEEe
Confidence            34455555  389999999999999999988888888876321  11112222234566778888899999999999976


Q ss_pred             cc
Q 046488          395 RF  396 (480)
Q Consensus       395 ~v  396 (480)
                      ..
T Consensus       122 lP  123 (295)
T 3gru_A          122 LP  123 (295)
T ss_dssp             CC
T ss_pred             Cc
Confidence            44

>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38

Probab=98.01  E-value=4.8e-05  Score=76.13  Aligned_cols=161  Identities=16%  Similarity=0.172  Sum_probs=85.7

Q ss_pred             hhhHHHhcCCCCCCCCeEEEECCCCcHHHHHHhhC---CCEEEEEecCCCh--hHHHHHHHhCC--CCeeeecccCCCCC
Q 046488          312 DFLIPEVLDIKPGEIRIGLDFSIGTGTFAARMREF---NVTLVSAIINLGA--PFNEMIALRGL--VPLYITINQRVPFF  384 (480)
Q Consensus       312 d~~I~~vL~l~~g~iR~VLDVGCGtG~fAa~Lae~---gV~Vv~vd~d~~~--~~~~~iA~rgl--ip~~~~~ae~LPFp  384 (480)
                      ..++..+|.+.++.  +|||+|||+|..+..+++.   ...+++++.+...  .....+...|.  +.+..+++..++..
T Consensus        91 s~l~~~~l~~~~g~--~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~g~~~v~~~~~D~~~~~~~  168 (309)
T 2b9e_A           91 SCLPAMLLDPPPGS--HVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPS  168 (309)
T ss_dssp             GGHHHHHHCCCTTC--EEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCTT
T ss_pred             HHHHHHHhCCCCCC--EEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCChHhcCcc
Confidence            33555677777775  8999999999999999874   3578888765211  11122222243  23344555555543


Q ss_pred             C---Cccchheec------ccccCccC--------hhc-------HHHHHHHHHhcccCCcEEEEeec-cCChhhHHHHH
Q 046488          385 D---NTLDLIHTT------RFLDGWID--------FVL-------LDFILYDWDRVLRPGGLLWIDSF-FCAKEDMNDYL  439 (480)
Q Consensus       385 d---~SFDlV~ss------~vL~h~~d--------~~~-------l~~~L~EI~RVLKPGG~fiI~~f-~~~~edL~~~~  439 (480)
                      +   ++||.|++.      .++...++        ...       ...+|..+.+.|+ ||+++.+.- ....+..+.+.
T Consensus       169 ~~~~~~fD~Vl~D~PcSg~G~~~r~pd~~~~~~~~~~~~~~l~~~Q~~iL~~a~~~l~-gG~lvYsTCs~~~~Ene~~v~  247 (309)
T 2b9e_A          169 DPRYHEVHYILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALTFPS-LQRLVYSTCSLCQEENEDVVR  247 (309)
T ss_dssp             CGGGTTEEEEEECCCCCC------------------CCHHHHHHHHHHHHHHHTTCTT-CCEEEEEESCCCGGGTHHHHH
T ss_pred             ccccCCCCEEEEcCCcCCCCCCccCCChhhhccCCHHHHHHHHHHHHHHHHHHHhccC-CCEEEEECCCCChHHhHHHHH
Confidence            2   579999962      22221111        011       1236778888887 999887642 11223333344


Q ss_pred             HHHHHc-C-ceee----EEEE---------------eeccCCCCcceeEEEEEEeCCCC
Q 046488          440 EVFKML-K-YKKH----KWVV---------------VPKRDKDDREVFFSAVLEKPPRP  477 (480)
Q Consensus       440 ~~l~~l-G-fkkl----~W~~---------------~~k~d~~~~E~~lsav~qKP~~~  477 (480)
                      .++++. + |+..    .|..               .+..  ...+.|+.|+++|...+
T Consensus       248 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~P~~--~~~dGfF~A~l~k~~~~  304 (309)
T 2b9e_A          248 DALQQNPGAFRLAPALPAWPHRGLSTFPGAEHCLRASPET--TLSSGFFVAVIERVEVP  304 (309)
T ss_dssp             HHHTTSTTTEEECCCCTTCCCBCCSSSTTGGGSEEECHHH--HSSCSEEEEEEEEC---
T ss_pred             HHHHhCCCcEEEeccccccccccccccCCCCCeEEECCCC--CCCCCeEEEEEEECCCC
Confidence            455543 2 4322    1210               0000  13478999999986543

>3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana}

Probab=98.01  E-value=1.8e-05  Score=81.73  Aligned_cols=47  Identities=21%  Similarity=0.200  Sum_probs=36.3

Q ss_pred             CCCCCCCccchheecccccCccC-hh----------------------------------cHHHHHHHHHhcccCCcEEE
Q 046488          380 RVPFFDNTLDLIHTTRFLDGWID-FV----------------------------------LLDFILYDWDRVLRPGGLLW  424 (480)
Q Consensus       380 ~LPFpd~SFDlV~ss~vL~h~~d-~~----------------------------------~l~~~L~EI~RVLKPGG~fi  424 (480)
                      .-.||++|||+||++.+||.+.+ ++                                  ++..+|....|.|||||+++
T Consensus       143 ~rlfP~~S~d~v~Ss~aLHWls~~p~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Qf~~D~~~fL~~ra~eL~pGG~mv  222 (374)
T 3b5i_A          143 RRLFPARTIDFFHSAFSLHWLSQVPESVTDRRSAAYNRGRVFIHGAGEKTTTAYKRQFQADLAEFLRARAAEVKRGGAMF  222 (374)
T ss_dssp             SCCSCTTCEEEEEEESCTTBCSSCCGGGGCTTSTTCCTTTSSSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEE
T ss_pred             cccCCCcceEEEEecceeeeeccCchhhhccccccccCCceEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEE
Confidence            34589999999999999853331 11                                  23457889999999999999


Q ss_pred             Ee
Q 046488          425 ID  426 (480)
Q Consensus       425 I~  426 (480)
                      +.
T Consensus       223 l~  224 (374)
T 3b5i_A          223 LV  224 (374)
T ss_dssp             EE
T ss_pred             EE
Confidence            86

>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45

Probab=97.99  E-value=1e-05  Score=84.14  Aligned_cols=110  Identities=15%  Similarity=0.062  Sum_probs=65.8

Q ss_pred             hHHHhcCCCCCCCCeEEEECCCCcHHHHHHhhC---------------CCEEEEEecCCChh--HHHHHHHhCC----CC
Q 046488          314 LIPEVLDIKPGEIRIGLDFSIGTGTFAARMREF---------------NVTLVSAIINLGAP--FNEMIALRGL----VP  372 (480)
Q Consensus       314 ~I~~vL~l~~g~iR~VLDVGCGtG~fAa~Lae~---------------gV~Vv~vd~d~~~~--~~~~iA~rgl----ip  372 (480)
                      ++-+++...++  .+|||.|||+|.|...++++               +..+.+++++...-  +.......+.    ..
T Consensus       162 ~mv~~l~~~~~--~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l~g~~~~~~~  239 (445)
T 2okc_A          162 AMVDCINPQMG--ETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRSP  239 (445)
T ss_dssp             HHHHHHCCCTT--CCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSCCS
T ss_pred             HHHHHhCCCCC--CEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHHhCCCcCCCC
Confidence            33345543333  47999999999998877653               24577877663111  1111223332    23


Q ss_pred             eeeecccCCCCCCCccchheecccccCccChh--------------cHHHHHHHHHhcccCCcEEEEe
Q 046488          373 LYITINQRVPFFDNTLDLIHTTRFLDGWIDFV--------------LLDFILYDWDRVLRPGGLLWID  426 (480)
Q Consensus       373 ~~~~~ae~LPFpd~SFDlV~ss~vL~h~~d~~--------------~l~~~L~EI~RVLKPGG~fiI~  426 (480)
                      +..+++...+.. ..||+|+++--+.+.....              .-..++..+.+.|||||++++.
T Consensus       240 i~~gD~l~~~~~-~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~gG~~a~V  306 (445)
T 2okc_A          240 IVCEDSLEKEPS-TLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVV  306 (445)
T ss_dssp             EEECCTTTSCCS-SCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             EeeCCCCCCccc-CCcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHHHHHHHhccCCEEEEE
Confidence            455554444443 4899999975443321100              0025899999999999998765

>3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus}

Probab=97.97  E-value=3.5e-06  Score=84.07  Aligned_cols=145  Identities=12%  Similarity=0.019  Sum_probs=80.9

Q ss_pred             CCCCCCCCeEEEECCCCcHHHHHHhhC-CCE-EEEEecCCChhHHHHHHHhCCCCe--eeecccCCCCCCCccchheecc
Q 046488          320 DIKPGEIRIGLDFSIGTGTFAARMREF-NVT-LVSAIINLGAPFNEMIALRGLVPL--YITINQRVPFFDNTLDLIHTTR  395 (480)
Q Consensus       320 ~l~~g~iR~VLDVGCGtG~fAa~Lae~-gV~-Vv~vd~d~~~~~~~~iA~rglip~--~~~~ae~LPFpd~SFDlV~ss~  395 (480)
                      -++++.  +|||+|||+|.|+.+++++ ++. ++++++....+........-...+  ....++-..++++.+|+|+|..
T Consensus        87 ~Lk~~~--~VLDLGaAPGGWsQvAa~~~gv~sV~GvdvG~d~~~~pi~~~~~g~~ii~~~~~~dv~~l~~~~~DvVLSDm  164 (282)
T 3gcz_A           87 YVKPTG--IVVDLGCGRGGWSYYAASLKNVKKVMAFTLGVQGHEKPIMRTTLGWNLIRFKDKTDVFNMEVIPGDTLLCDI  164 (282)
T ss_dssp             SCCCCE--EEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCCCCBTTGGGEEEECSCCGGGSCCCCCSEEEECC
T ss_pred             CCCCCC--EEEEeCCCCCHHHHHHHHhcCCCeeeeEEeccCccccccccccCCCceEEeeCCcchhhcCCCCcCEEEecC
Confidence            355554  8999999999999988864 543 445554311000000000000011  1111233446678999999977


Q ss_pred             cccCcc----ChhcHHHHHHHHHhcccCC--cEEEEeeccCChhhHHHHHHHHHHcCceeeEEEEeeccCCCCcceeEEE
Q 046488          396 FLDGWI----DFVLLDFILYDWDRVLRPG--GLLWIDSFFCAKEDMNDYLEVFKMLKYKKHKWVVVPKRDKDDREVFFSA  469 (480)
Q Consensus       396 vL~h~~----d~~~l~~~L~EI~RVLKPG--G~fiI~~f~~~~edL~~~~~~l~~lGfkkl~W~~~~k~d~~~~E~~lsa  469 (480)
                      +.. ..    |......+|.=+.++||||  |.|++--|..-.++...+...+++. |.++.+..- -......|+|+.+
T Consensus       165 Apn-sG~~~~D~~rs~~LL~~A~~~Lk~g~~G~Fv~KvF~pyg~~~~~l~~~lk~~-F~~V~~~KP-aSR~~S~E~Y~V~  241 (282)
T 3gcz_A          165 GES-SPSIAVEEQRTLRVLNCAKQWLQEGNYTEFCIKVLCPYTPLIMEELSRLQLK-HGGGLVRVP-LSRNSTHEMYWVS  241 (282)
T ss_dssp             CCC-CSCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEESCCCSHHHHHHHHHHHHH-HCCEEECCT-TSCTTCCCEEEET
T ss_pred             ccC-CCChHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEecCCCccHHHHHHHHHHh-cCCEEEEcC-CCcccCcceeEEE
Confidence            654 21    2211112455567899999  9998866654344545555555553 776665443 2222567888864

>4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A*

Probab=97.96  E-value=7.7e-05  Score=77.11  Aligned_cols=141  Identities=9%  Similarity=-0.005  Sum_probs=84.7

Q ss_pred             CCCCCCCeEEEECCCCcHHHHHHhhCCCEEEEEecCCChhHHHHHHHhCCCCeeeecccCCCCCCCccchheecccccCc
Q 046488          321 IKPGEIRIGLDFSIGTGTFAARMREFNVTLVSAIINLGAPFNEMIALRGLVPLYITINQRVPFFDNTLDLIHTTRFLDGW  400 (480)
Q Consensus       321 l~~g~iR~VLDVGCGtG~fAa~Lae~gV~Vv~vd~d~~~~~~~~iA~rglip~~~~~ae~LPFpd~SFDlV~ss~vL~h~  400 (480)
                      +++|.  +|||+||.+|+|+..|+++|..|+++|...   +...+...+.+....+++..+..+.+.||+|+|..+..  
T Consensus       209 l~~G~--~vlDLGAaPGGWT~~l~~rg~~V~aVD~~~---l~~~l~~~~~V~~~~~d~~~~~~~~~~~D~vvsDm~~~--  281 (375)
T 4auk_A          209 LANGM--WAVDLGACPGGWTYQLVKRNMWVYSVDNGP---MAQSLMDTGQVTWLREDGFKFRPTRSNISWMVCDMVEK--  281 (375)
T ss_dssp             SCTTC--EEEEETCTTCHHHHHHHHTTCEEEEECSSC---CCHHHHTTTCEEEECSCTTTCCCCSSCEEEEEECCSSC--
T ss_pred             CCCCC--EEEEeCcCCCHHHHHHHHCCCEEEEEEhhh---cChhhccCCCeEEEeCccccccCCCCCcCEEEEcCCCC--
Confidence            44554  899999999999999999999999998653   22333344555555666666666778999999976542  


Q ss_pred             cChhcHHHHHHHHHhcccCC---cEEEEeeccC-C-hhh----HHHHHHHHHHcCceeeEEEEeeccCCCCcceeEEEEE
Q 046488          401 IDFVLLDFILYDWDRVLRPG---GLLWIDSFFC-A-KED----MNDYLEVFKMLKYKKHKWVVVPKRDKDDREVFFSAVL  471 (480)
Q Consensus       401 ~d~~~l~~~L~EI~RVLKPG---G~fiI~~f~~-~-~ed----L~~~~~~l~~lGfkkl~W~~~~k~d~~~~E~~lsav~  471 (480)
                        +.   .++.-+.+.|..|   +.++...+-- . .+.    +..+...++..|+...-. . .+.-.++.|+  ++.+
T Consensus       282 --p~---~~~~l~~~wl~~~~~~~aI~~lKL~mk~~~~~l~~~~~~i~~~l~~~g~~~~l~-a-khL~hdReEi--TV~~  352 (375)
T 4auk_A          282 --PA---KVAALMAQWLVNGWCRETIFNLKLPMKKRYEEVSHNLAYIQAQLDEHGINAQIQ-A-RQLYHDREEV--TVHV  352 (375)
T ss_dssp             --HH---HHHHHHHHHHHTTSCSEEEEEEECCSSSHHHHHHHHHHHHHHHHHHTTCCEEEE-E-ECCTTCSSEE--EEEE
T ss_pred             --hH---HhHHHHHHHHhccccceEEEEEEecccchHHHHHHHHHHHHHHHHhcCcchhhe-e-hhhccCCcEE--EEEE
Confidence              22   2444444544444   5443332211 1 122    234556777778763211 1 1111134664  6678


Q ss_pred             EeCCCC
Q 046488          472 EKPPRP  477 (480)
Q Consensus       472 qKP~~~  477 (480)
                      +||..+
T Consensus       353 rk~~as  358 (375)
T 4auk_A          353 RRIWAA  358 (375)
T ss_dssp             EECCC-
T ss_pred             Eechhc
Confidence            998763

>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}

Probab=97.90  E-value=3.9e-05  Score=77.83  Aligned_cols=115  Identities=13%  Similarity=0.083  Sum_probs=65.1

Q ss_pred             CeEEEECCCCcHHHHHHhhCCCEEEEEecCCChh--HHHHHHHhCC--CCeeeecccCC-C-CCC--------------C
Q 046488          327 RIGLDFSIGTGTFAARMREFNVTLVSAIINLGAP--FNEMIALRGL--VPLYITINQRV-P-FFD--------------N  386 (480)
Q Consensus       327 R~VLDVGCGtG~fAa~Lae~gV~Vv~vd~d~~~~--~~~~iA~rgl--ip~~~~~ae~L-P-Fpd--------------~  386 (480)
                      .+|||+|||+|.++..|++....|++++.+..+-  +...++..+.  +.++.++++.+ + +..              .
T Consensus       215 ~~vLDl~cG~G~~~l~la~~~~~V~gvd~~~~ai~~a~~n~~~ng~~~v~~~~~d~~~~~~~~~~~~~~~~l~~~~~~~~  294 (369)
T 3bt7_A          215 GDLLELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSY  294 (369)
T ss_dssp             SEEEEESCTTSHHHHHHGGGSSEEEEECCCHHHHHHHHHHHHHTTCCSEEEECCCSHHHHHHHSSCCCCTTGGGSCGGGC
T ss_pred             CEEEEccCCCCHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEECCHHHHHHHHhhccccccccccccccC
Confidence            4799999999999999998777888887653111  1122223332  22334443332 1 111              4


Q ss_pred             ccchheecccccCccChhcHHHHHHHHHhcccCCcEEEEeeccCChhhHHHHHHHHHHcCceeeEEE
Q 046488          387 TLDLIHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDSFFCAKEDMNDYLEVFKMLKYKKHKWV  453 (480)
Q Consensus       387 SFDlV~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~f~~~~edL~~~~~~l~~lGfkkl~W~  453 (480)
                      +||+|+..      ++..   -+..++.++|+|+|.+++..  |....+.+-...+.. ||+-....
T Consensus       295 ~fD~Vv~d------PPr~---g~~~~~~~~l~~~g~ivyvs--c~p~t~ard~~~l~~-~y~~~~~~  349 (369)
T 3bt7_A          295 QCETIFVD------PPRS---GLDSETEKMVQAYPRILYIS--CNPETLCKNLETLSQ-THKVERLA  349 (369)
T ss_dssp             CEEEEEEC------CCTT---CCCHHHHHHHTTSSEEEEEE--SCHHHHHHHHHHHHH-HEEEEEEE
T ss_pred             CCCEEEEC------cCcc---ccHHHHHHHHhCCCEEEEEE--CCHHHHHHHHHHHhh-CcEEEEEE
Confidence            79999852      1111   14567888888999987753  344444322222332 56544433

>2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A*

Probab=97.88  E-value=8.4e-05  Score=77.03  Aligned_cols=49  Identities=16%  Similarity=0.242  Sum_probs=34.9

Q ss_pred             ccCCCCCCCccchheecccccCcc-Ch-hcH-----------------------------------HHHHHHHHhcccCC
Q 046488          378 NQRVPFFDNTLDLIHTTRFLDGWI-DF-VLL-----------------------------------DFILYDWDRVLRPG  420 (480)
Q Consensus       378 ae~LPFpd~SFDlV~ss~vL~h~~-d~-~~l-----------------------------------~~~L~EI~RVLKPG  420 (480)
                      ...-.||++|||+||++.+|| |. +. +.+                                   ..+|.-..|+||||
T Consensus       140 Fy~rlfp~~S~d~v~Ss~aLH-Wls~~p~~l~~~~s~~~nkg~i~i~~~sp~~v~~ay~~Qf~~D~~~FL~~Ra~eL~pG  218 (384)
T 2efj_A          140 FYSRLFPEESMHFLHSCYCLH-WLSQVPSGLVTELGISVNKGCIYSSKASRPPIQKAYLDQFTKDFTTFLRIHSEELISR  218 (384)
T ss_dssp             TTSCCSCTTCEEEEEEESCTT-BCSSSCCC------CCCCTTCSSSCTTSCHHHHHHHHHHHHHHHHHHHHHHHHHEEEE
T ss_pred             hhhccCCCCceEEEEecceee-ecCCCchhhhccccccccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence            445678999999999999985 63 21 111                                   11255558999999


Q ss_pred             cEEEEee
Q 046488          421 GLLWIDS  427 (480)
Q Consensus       421 G~fiI~~  427 (480)
                      |++++.-
T Consensus       219 G~mvl~~  225 (384)
T 2efj_A          219 GRMLLTF  225 (384)
T ss_dssp             EEEEEEE
T ss_pred             CeEEEEE
Confidence            9999874

>3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A*

Probab=97.77  E-value=4.8e-05  Score=76.41  Aligned_cols=140  Identities=11%  Similarity=0.064  Sum_probs=76.9

Q ss_pred             CCeEEEECCCCcHHHHHHhhC-CCE-EEEEecCCCh---hHHHHHHHhCCCCeeeecccCCCCCCCccchheecccccCc
Q 046488          326 IRIGLDFSIGTGTFAARMREF-NVT-LVSAIINLGA---PFNEMIALRGLVPLYITINQRVPFFDNTLDLIHTTRFLDGW  400 (480)
Q Consensus       326 iR~VLDVGCGtG~fAa~Lae~-gV~-Vv~vd~d~~~---~~~~~iA~rglip~~~~~ae~LPFpd~SFDlV~ss~vL~h~  400 (480)
                      .++|||+||++|+|+..++++ ++. ++++++....   +...+......+. .....+-.-+..+.+|+|+|..+-. -
T Consensus        82 g~~vlDLGaaPGgWsqva~~~~gv~sV~Gvdlg~~~~~~P~~~~~~~~~iv~-~~~~~di~~l~~~~~DlVlsD~APn-s  159 (300)
T 3eld_A           82 TGRVLDLGCGRGGWSYYAAAQKEVMSVKGYTLGIEGHEKPIHMQTLGWNIVK-FKDKSNVFTMPTEPSDTLLCDIGES-S  159 (300)
T ss_dssp             CEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCCCCBTTGGGEE-EECSCCTTTSCCCCCSEEEECCCCC-C
T ss_pred             CCEEEEcCCCCCHHHHHHHHhcCCceeeeEEeccccccccccccccCCceEE-eecCceeeecCCCCcCEEeecCcCC-C
Confidence            358999999999999999985 543 4455442110   0000000000000 1111223345678999999976544 2


Q ss_pred             c----ChhcHHHHHHHHHhcccCC-cEEEEeeccCChhhHHHHHHHHHHcCceeeEEEEeeccCCCCcceeEEE
Q 046488          401 I----DFVLLDFILYDWDRVLRPG-GLLWIDSFFCAKEDMNDYLEVFKMLKYKKHKWVVVPKRDKDDREVFFSA  469 (480)
Q Consensus       401 ~----d~~~l~~~L~EI~RVLKPG-G~fiI~~f~~~~edL~~~~~~l~~lGfkkl~W~~~~k~d~~~~E~~lsa  469 (480)
                      .    |......+|.=+.++|||| |.|++--|..-.++...+...+++. |..+.+..- -......|+|+..
T Consensus       160 G~~~~D~~rs~~LL~~A~~~LkpG~G~FV~KvF~~yG~~~~~ll~~lk~~-F~~V~~~KP-aSR~~S~E~Y~V~  231 (300)
T 3eld_A          160 SNPLVERDRTMKVLENFERWKHVNTENFCVKVLAPYHPDVIEKLERLQLR-FGGGIVRVP-FSRNSTHEMYYIS  231 (300)
T ss_dssp             SSHHHHHHHHHHHHHHHHHHCCTTCCEEEEEESSTTSHHHHHHHHHHHHH-HCCEEECCT-TSCTTCCCEEEES
T ss_pred             CCHHHHHHHHHHHHHHHHHHhcCCCCcEEEEeccccCccHHHHHHHHHHh-CCcEEEEeC-CCCCCChHHeeec
Confidence            1    1111122455557899999 9999876654344545555555553 676665443 2222457888753

>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0

Probab=97.71  E-value=5.7e-05  Score=73.60  Aligned_cols=73  Identities=10%  Similarity=0.120  Sum_probs=49.7

Q ss_pred             HhcCCCCCCCCeEEEECCCCcHHHHHHhhCCCEEEEEecCCChhHHHHHHHh----CCCCeeeecccCCCCCC----Ccc
Q 046488          317 EVLDIKPGEIRIGLDFSIGTGTFAARMREFNVTLVSAIINLGAPFNEMIALR----GLVPLYITINQRVPFFD----NTL  388 (480)
Q Consensus       317 ~vL~l~~g~iR~VLDVGCGtG~fAa~Lae~gV~Vv~vd~d~~~~~~~~iA~r----glip~~~~~ae~LPFpd----~SF  388 (480)
                      +.+++.++  .+|||||||+|.++..|++++..+++++++.  .+...+..+    ..+.++.+++..+++++    +.|
T Consensus        23 ~~~~~~~~--~~VLEIG~G~G~lt~~La~~~~~V~avEid~--~~~~~~~~~~~~~~~v~~i~~D~~~~~~~~~~~~~~~   98 (255)
T 3tqs_A           23 SAIHPQKT--DTLVEIGPGRGALTDYLLTECDNLALVEIDR--DLVAFLQKKYNQQKNITIYQNDALQFDFSSVKTDKPL   98 (255)
T ss_dssp             HHHCCCTT--CEEEEECCTTTTTHHHHTTTSSEEEEEECCH--HHHHHHHHHHTTCTTEEEEESCTTTCCGGGSCCSSCE
T ss_pred             HhcCCCCc--CEEEEEcccccHHHHHHHHhCCEEEEEECCH--HHHHHHHHHHhhCCCcEEEEcchHhCCHHHhccCCCe
Confidence            44455555  4899999999999999999988888888763  333322211    23456677788887754    568


Q ss_pred             chheec
Q 046488          389 DLIHTT  394 (480)
Q Consensus       389 DlV~ss  394 (480)
                      | |+++
T Consensus        99 ~-vv~N  103 (255)
T 3tqs_A           99 R-VVGN  103 (255)
T ss_dssp             E-EEEE
T ss_pred             E-EEec
Confidence            8 4443

>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}

Probab=97.68  E-value=5.1e-05  Score=78.33  Aligned_cols=99  Identities=11%  Similarity=0.040  Sum_probs=62.7

Q ss_pred             CeEEEECCCCcHHHHHHhhC--C--------------------------------------CEEEEEecCCCh--hHHHH
Q 046488          327 RIGLDFSIGTGTFAARMREF--N--------------------------------------VTLVSAIINLGA--PFNEM  364 (480)
Q Consensus       327 R~VLDVGCGtG~fAa~Lae~--g--------------------------------------V~Vv~vd~d~~~--~~~~~  364 (480)
                      ..|||.+||+|+++..++..  +                                      ..++++|.+..+  .+...
T Consensus       203 ~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~al~~Ar~N  282 (393)
T 3k0b_A          203 RPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLNIIGGDIDARLIEIAKQN  282 (393)
T ss_dssp             SCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHHHHHHHH
T ss_pred             CeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCceEEEEECCHHHHHHHHHH
Confidence            57999999999998776653  2                                      347888766311  11122


Q ss_pred             HHHhCC---CCeeeecccCCCCCCCccchheeccccc-CccChhcHHHHHHHHHhcccC--CcEEEEe
Q 046488          365 IALRGL---VPLYITINQRVPFFDNTLDLIHTTRFLD-GWIDFVLLDFILYDWDRVLRP--GGLLWID  426 (480)
Q Consensus       365 iA~rgl---ip~~~~~ae~LPFpd~SFDlV~ss~vL~-h~~d~~~l~~~L~EI~RVLKP--GG~fiI~  426 (480)
                      +...|.   +.+..+++..++.+ .+||+|+++--+. .+.+...+..++.++.++||+  ||.+++.
T Consensus       283 a~~~gl~~~I~~~~~D~~~~~~~-~~fD~Iv~NPPYg~rl~~~~~l~~ly~~lg~~lk~~~g~~~~ii  349 (393)
T 3k0b_A          283 AVEAGLGDLITFRQLQVADFQTE-DEYGVVVANPPYGERLEDEEAVRQLYREMGIVYKRMPTWSVYVL  349 (393)
T ss_dssp             HHHTTCTTCSEEEECCGGGCCCC-CCSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTCTTCEEEEE
T ss_pred             HHHcCCCCceEEEECChHhCCCC-CCCCEEEECCCCccccCCchhHHHHHHHHHHHHhcCCCCEEEEE
Confidence            233333   44566777777765 4899999872221 122223345677888888887  8888774

>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*

Probab=97.62  E-value=7.6e-05  Score=73.56  Aligned_cols=75  Identities=13%  Similarity=0.074  Sum_probs=52.1

Q ss_pred             HhcCCCCCCCCeEEEECCCCcHHHHHHhhCCCEEEEEecCCChhHHHHHHHh---CCCCeeeecccCCCCCCC-ccchhe
Q 046488          317 EVLDIKPGEIRIGLDFSIGTGTFAARMREFNVTLVSAIINLGAPFNEMIALR---GLVPLYITINQRVPFFDN-TLDLIH  392 (480)
Q Consensus       317 ~vL~l~~g~iR~VLDVGCGtG~fAa~Lae~gV~Vv~vd~d~~~~~~~~iA~r---glip~~~~~ae~LPFpd~-SFDlV~  392 (480)
                      +.+++.++   +|||||||+|.++..|++++..+++++++.  .+......+   ..+.++.+++..+++++. .||.|+
T Consensus        41 ~~~~~~~~---~VLEIG~G~G~lt~~L~~~~~~V~avEid~--~~~~~l~~~~~~~~v~vi~~D~l~~~~~~~~~~~~iv  115 (271)
T 3fut_A           41 EAARPFTG---PVFEVGPGLGALTRALLEAGAEVTAIEKDL--RLRPVLEETLSGLPVRLVFQDALLYPWEEVPQGSLLV  115 (271)
T ss_dssp             HHHCCCCS---CEEEECCTTSHHHHHHHHTTCCEEEEESCG--GGHHHHHHHTTTSSEEEEESCGGGSCGGGSCTTEEEE
T ss_pred             HhcCCCCC---eEEEEeCchHHHHHHHHHcCCEEEEEECCH--HHHHHHHHhcCCCCEEEEECChhhCChhhccCccEEE
Confidence            34445444   799999999999999999988888888763  333322221   234566777888888753 688888


Q ss_pred             eccc
Q 046488          393 TTRF  396 (480)
Q Consensus       393 ss~v  396 (480)
                      ++.-
T Consensus       116 ~NlP  119 (271)
T 3fut_A          116 ANLP  119 (271)
T ss_dssp             EEEC
T ss_pred             ecCc
Confidence            7643

>1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35

Probab=97.62  E-value=8.1e-05  Score=76.47  Aligned_cols=48  Identities=25%  Similarity=0.299  Sum_probs=36.8

Q ss_pred             ccCCCCCCCccchheecccccCccCh-------------------------------hcHHHHHHHHHhcccCCcEEEEe
Q 046488          378 NQRVPFFDNTLDLIHTTRFLDGWIDF-------------------------------VLLDFILYDWDRVLRPGGLLWID  426 (480)
Q Consensus       378 ae~LPFpd~SFDlV~ss~vL~h~~d~-------------------------------~~l~~~L~EI~RVLKPGG~fiI~  426 (480)
                      ...-.||++|||+||++.+|| |...                               .++..+|.-..|.|+|||++++.
T Consensus       130 Fy~rlfp~~S~d~v~Ss~aLH-Wls~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL~~Ra~EL~pGG~mvl~  208 (359)
T 1m6e_X          130 FYGRLFPRNTLHFIHSSYSLM-WLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLT  208 (359)
T ss_dssp             SSSCCSCTTCBSCEEEESCTT-BCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEE
T ss_pred             hhhccCCCCceEEEEehhhhh-hcccCchhhhccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEE
Confidence            445789999999999999985 5321                               01234588889999999999886

>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}

Probab=97.61  E-value=8.2e-05  Score=76.50  Aligned_cols=100  Identities=12%  Similarity=0.064  Sum_probs=64.3

Q ss_pred             CCeEEEECCCCcHHHHHHhhCC----------------------------------------CEEEEEecCCCh--hHHH
Q 046488          326 IRIGLDFSIGTGTFAARMREFN----------------------------------------VTLVSAIINLGA--PFNE  363 (480)
Q Consensus       326 iR~VLDVGCGtG~fAa~Lae~g----------------------------------------V~Vv~vd~d~~~--~~~~  363 (480)
                      ...|||.+||+|+|+..++..+                                        ..++++|.+..+  .+..
T Consensus       196 ~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~ai~~Ar~  275 (385)
T 3ldu_A          196 GRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFKIYGYDIDEESIDIARE  275 (385)
T ss_dssp             TSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCCEEEEESCHHHHHHHHH
T ss_pred             CCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCceEEEEECCHHHHHHHHH
Confidence            3579999999999988776542                                        457888776311  1122


Q ss_pred             HHHHhCC---CCeeeecccCCCCCCCccchheeccccc-CccChhcHHHHHHHHHhcccC--CcEEEEe
Q 046488          364 MIALRGL---VPLYITINQRVPFFDNTLDLIHTTRFLD-GWIDFVLLDFILYDWDRVLRP--GGLLWID  426 (480)
Q Consensus       364 ~iA~rgl---ip~~~~~ae~LPFpd~SFDlV~ss~vL~-h~~d~~~l~~~L~EI~RVLKP--GG~fiI~  426 (480)
                      .+...|.   +.+..+++..++.+ .+||+|+++--+. .+.+...+..++.++.++||+  ||.+++.
T Consensus       276 Na~~~gl~~~i~~~~~D~~~l~~~-~~~D~Iv~NPPyg~rl~~~~~l~~ly~~lg~~lk~~~g~~~~ii  343 (385)
T 3ldu_A          276 NAEIAGVDEYIEFNVGDATQFKSE-DEFGFIITNPPYGERLEDKDSVKQLYKELGYAFRKLKNWSYYLI  343 (385)
T ss_dssp             HHHHHTCGGGEEEEECCGGGCCCS-CBSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTSBSCEEEEE
T ss_pred             HHHHcCCCCceEEEECChhhcCcC-CCCcEEEECCCCcCccCCHHHHHHHHHHHHHHHhhCCCCEEEEE
Confidence            2233343   34455667777764 5899999854332 122233456788888889987  8888774

>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae}

Probab=97.58  E-value=4.7e-05  Score=74.18  Aligned_cols=83  Identities=14%  Similarity=0.106  Sum_probs=52.2

Q ss_pred             hHHHhcCCCCCCCCeEEEECCCCcHHHHHHhhCCCEEEEEecCCC-h----hHHHHHHHh--------CCCCeeeecccC
Q 046488          314 LIPEVLDIKPGEIRIGLDFSIGTGTFAARMREFNVTLVSAIINLG-A----PFNEMIALR--------GLVPLYITINQR  380 (480)
Q Consensus       314 ~I~~vL~l~~g~iR~VLDVGCGtG~fAa~Lae~gV~Vv~vd~d~~-~----~~~~~iA~r--------glip~~~~~ae~  380 (480)
                      .+.+.+.+.++  .+|||+|||+|.++..|++.+..|++++.+.. +    .+. ..|.+        ..+.++.++++.
T Consensus        74 ~l~~a~~~~~~--~~VLDlgcG~G~~a~~lA~~g~~V~~vD~s~~~~~ll~~~l-~~a~~n~~~~~~~~ri~~~~~d~~~  150 (258)
T 2r6z_A           74 LIAKAVNHTAH--PTVWDATAGLGRDSFVLASLGLTVTAFEQHPAVACLLSDGI-RRALLNPETQDTAARINLHFGNAAE  150 (258)
T ss_dssp             HHHHHTTGGGC--CCEEETTCTTCHHHHHHHHTTCCEEEEECCHHHHHHHHHHH-HHHHHSHHHHHHHTTEEEEESCHHH
T ss_pred             HHHHHhCcCCc--CeEEEeeCccCHHHHHHHHhCCEEEEEECChhhhHHHHHHH-HHHHhHHHhhCCccCeEEEECCHHH
Confidence            44455544333  37999999999999999999888888887620 0    222 22221        224455565444


Q ss_pred             -CC-CCC--CccchheecccccC
Q 046488          381 -VP-FFD--NTLDLIHTTRFLDG  399 (480)
Q Consensus       381 -LP-Fpd--~SFDlV~ss~vL~h  399 (480)
                       ++ +++  ++||+|++.-.+.+
T Consensus       151 ~l~~~~~~~~~fD~V~~dP~~~~  173 (258)
T 2r6z_A          151 QMPALVKTQGKPDIVYLDPMYPE  173 (258)
T ss_dssp             HHHHHHHHHCCCSEEEECCCC--
T ss_pred             HHHhhhccCCCccEEEECCCCCC
Confidence             34 455  89999998765543

>2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A*

Probab=97.57  E-value=0.00027  Score=69.90  Aligned_cols=138  Identities=12%  Similarity=-0.048  Sum_probs=74.2

Q ss_pred             CCCCCCCeEEEECCCCcHHHHHHhhC-CC-EEEEEe--cCC-ChhHHHHHHHhCCCCeee---e-cccCCCCCCCccchh
Q 046488          321 IKPGEIRIGLDFSIGTGTFAARMREF-NV-TLVSAI--INL-GAPFNEMIALRGLVPLYI---T-INQRVPFFDNTLDLI  391 (480)
Q Consensus       321 l~~g~iR~VLDVGCGtG~fAa~Lae~-gV-~Vv~vd--~d~-~~~~~~~iA~rglip~~~---~-~ae~LPFpd~SFDlV  391 (480)
                      ++++.  +|||+||+.|+|+.+.+++ ++ .+.+.+  .+. ..++..   .--++.++.   + +...  ..+..+|+|
T Consensus        71 ikpg~--~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D~~~~P~~~---~~~Gv~~i~~~~G~Df~~--~~~~~~DvV  143 (269)
T 2px2_A           71 VQPIG--KVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPGHEEPMLM---QSYGWNIVTMKSGVDVFY--KPSEISDTL  143 (269)
T ss_dssp             CCCCE--EEEEETCTTSHHHHHHTTSTTEEEEEEECCCSTTSCCCCCC---CSTTGGGEEEECSCCGGG--SCCCCCSEE
T ss_pred             CCCCC--EEEEcCCCCCHHHHHHhhhcCCCCceeEEEccccccCCCcc---cCCCceEEEeeccCCccC--CCCCCCCEE
Confidence            55664  8999999999999999986 44 222332  220 011100   001112221   3 3333  335689999


Q ss_pred             eecccccCcc----ChhcHHHHHHHHHhcccCCc-EEEEeeccCChhhHHHHHHHHHHcCceeeEEEEeeccCC-CCcce
Q 046488          392 HTTRFLDGWI----DFVLLDFILYDWDRVLRPGG-LLWIDSFFCAKEDMNDYLEVFKMLKYKKHKWVVVPKRDK-DDREV  465 (480)
Q Consensus       392 ~ss~vL~h~~----d~~~l~~~L~EI~RVLKPGG-~fiI~~f~~~~edL~~~~~~l~~lGfkkl~W~~~~k~d~-~~~E~  465 (480)
                      +|..+=. -.    |......+|.=+.++|+||| .|++-.|....++..++.+.+++. |..++-  ...... ...|+
T Consensus       144 LSDMAPn-SG~~~vD~~Rs~~aL~~A~~~Lk~gG~~FvvKVFqg~~~~~~~~l~~lk~~-F~~vkv--k~paSR~~S~E~  219 (269)
T 2px2_A          144 LCDIGES-SPSAEIEEQRTLRILEMVSDWLSRGPKEFCIKILCPYMPKVIEKLESLQRR-FGGGLV--RVPLSRNSNHEM  219 (269)
T ss_dssp             EECCCCC-CSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEESCTTSHHHHHHHHHHHHH-HCCEEE--CCTTSCTTCCCE
T ss_pred             EeCCCCC-CCccHHHHHHHHHHHHHHHHHhhcCCcEEEEEECCCCchHHHHHHHHHHHH-cCCEEE--ECCCCCCCCccE
Confidence            9865432 11    11111124544558999999 888866663335555544444443 666552  222222 55798


Q ss_pred             eEEE
Q 046488          466 FFSA  469 (480)
Q Consensus       466 ~lsa  469 (480)
                      |+.+
T Consensus       220 YlVa  223 (269)
T 2px2_A          220 YWVS  223 (269)
T ss_dssp             EEET
T ss_pred             EEEe
Confidence            8864

>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans}

Probab=97.57  E-value=0.00014  Score=75.08  Aligned_cols=98  Identities=15%  Similarity=0.060  Sum_probs=63.5

Q ss_pred             CeEEEECCCCcHHHHHHhhC--C--------------------------------------CEEEEEecCCCh--hHHHH
Q 046488          327 RIGLDFSIGTGTFAARMREF--N--------------------------------------VTLVSAIINLGA--PFNEM  364 (480)
Q Consensus       327 R~VLDVGCGtG~fAa~Lae~--g--------------------------------------V~Vv~vd~d~~~--~~~~~  364 (480)
                      ..+||.+||+|+++..++..  +                                      ..++++|.+..+  .+...
T Consensus       196 ~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~v~GvDid~~al~~Ar~N  275 (384)
T 3ldg_A          196 KPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLDISGFDFDGRMVEIARKN  275 (384)
T ss_dssp             SCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHHHHHHHH
T ss_pred             CeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCceEEEEECCHHHHHHHHHH
Confidence            57999999999998776643  2                                      347888766311  11122


Q ss_pred             HHHhCC---CCeeeecccCCCCCCCccchheec--ccccCccChhcHHHHHHHHHhcccC--CcEEEEe
Q 046488          365 IALRGL---VPLYITINQRVPFFDNTLDLIHTT--RFLDGWIDFVLLDFILYDWDRVLRP--GGLLWID  426 (480)
Q Consensus       365 iA~rgl---ip~~~~~ae~LPFpd~SFDlV~ss--~vL~h~~d~~~l~~~L~EI~RVLKP--GG~fiI~  426 (480)
                      +...|.   +.+..+++..++.+ .+||+|+++  +... +.+...+..++.++.++||+  ||.+++.
T Consensus       276 a~~~gl~~~I~~~~~D~~~l~~~-~~fD~Iv~NPPYG~r-l~~~~~l~~ly~~lg~~lk~~~g~~~~ii  342 (384)
T 3ldg_A          276 AREVGLEDVVKLKQMRLQDFKTN-KINGVLISNPPYGER-LLDDKAVDILYNEMGETFAPLKTWSQFIL  342 (384)
T ss_dssp             HHHTTCTTTEEEEECCGGGCCCC-CCSCEEEECCCCTTT-TSCHHHHHHHHHHHHHHHTTCTTSEEEEE
T ss_pred             HHHcCCCCceEEEECChHHCCcc-CCcCEEEECCchhhc-cCCHHHHHHHHHHHHHHHhhCCCcEEEEE
Confidence            223343   34555667777765 489999986  3221 33334456788888888887  9988774

>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A

Probab=97.46  E-value=5.8e-05  Score=74.03  Aligned_cols=104  Identities=10%  Similarity=-0.058  Sum_probs=63.1

Q ss_pred             hhHHHhcCCCCCCCCeEEEECCCCcHHHHHHhhCCCEEEEEecCCCh-----hHHHHHHHh---------CCCCeeeecc
Q 046488          313 FLIPEVLDIKPGEIRIGLDFSIGTGTFAARMREFNVTLVSAIINLGA-----PFNEMIALR---------GLVPLYITIN  378 (480)
Q Consensus       313 ~~I~~vL~l~~g~iR~VLDVGCGtG~fAa~Lae~gV~Vv~vd~d~~~-----~~~~~iA~r---------glip~~~~~a  378 (480)
                      ..+.+.+.+.++...+|||+|||+|..+..++++|..|++++.+...     ..... +.+         ..+.++.+++
T Consensus        76 e~l~~al~l~~g~~~~VLDl~~G~G~dal~lA~~g~~V~~vE~~~~~~~l~~~~l~~-a~~~~~~~~~l~~~i~~~~~D~  154 (258)
T 2oyr_A           76 EAVAKAVGIKGDYLPDVVDATAGLGRDAFVLASVGCRVRMLERNPVVAALLDDGLAR-GYADAEIGGWLQERLQLIHASS  154 (258)
T ss_dssp             SHHHHHTTCBTTBCCCEEETTCTTCHHHHHHHHHTCCEEEEECCHHHHHHHHHHHHH-HHHCTTTHHHHHHHEEEEESCH
T ss_pred             HHHHHHhcccCCCCCEEEEcCCcCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHH-HHhhHhhhhhhhcCEEEEECCH
Confidence            34556777766522489999999999999999988889888865310     01111 111         1133455553


Q ss_pred             cC-CCCCCCccchheecccccCccChhcHHHHHHHHHhcccCCc
Q 046488          379 QR-VPFFDNTLDLIHTTRFLDGWIDFVLLDFILYDWDRVLRPGG  421 (480)
Q Consensus       379 e~-LPFpd~SFDlV~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG  421 (480)
                      .. ++.....||+|++.-.+.+ ...   ..++.+..|+||+.+
T Consensus       155 ~~~L~~~~~~fDvV~lDP~y~~-~~~---saavkk~~~~lr~l~  194 (258)
T 2oyr_A          155 LTALTDITPRPQVVYLDPMFPH-KQK---SALVKKEMRVFQSLV  194 (258)
T ss_dssp             HHHSTTCSSCCSEEEECCCCCC-CCC--------HHHHHHHHHS
T ss_pred             HHHHHhCcccCCEEEEcCCCCC-ccc---chHHHHHHHHHHHhh
Confidence            33 4433347999998765543 222   347788889998876

>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*

Probab=97.39  E-value=0.0004  Score=67.15  Aligned_cols=65  Identities=15%  Similarity=0.112  Sum_probs=44.3

Q ss_pred             HhcCCCCCCCCeEEEECCCCcHHHHHHhhCC-CEEEEEecCCChhHHHHHHHhC---CCCeeeecccCCCCCCC
Q 046488          317 EVLDIKPGEIRIGLDFSIGTGTFAARMREFN-VTLVSAIINLGAPFNEMIALRG---LVPLYITINQRVPFFDN  386 (480)
Q Consensus       317 ~vL~l~~g~iR~VLDVGCGtG~fAa~Lae~g-V~Vv~vd~d~~~~~~~~iA~rg---lip~~~~~ae~LPFpd~  386 (480)
                      +.+++.++  .+|||||||+|.++..|++++ ..+++++++   +.....+.+.   .+.++.+++..+++++.
T Consensus        25 ~~~~~~~~--~~VLDiG~G~G~lt~~L~~~~~~~v~avEid---~~~~~~~~~~~~~~v~~i~~D~~~~~~~~~   93 (249)
T 3ftd_A           25 EELNIEEG--NTVVEVGGGTGNLTKVLLQHPLKKLYVIELD---REMVENLKSIGDERLEVINEDASKFPFCSL   93 (249)
T ss_dssp             HHTTCCTT--CEEEEEESCHHHHHHHHTTSCCSEEEEECCC---HHHHHHHTTSCCTTEEEECSCTTTCCGGGS
T ss_pred             HhcCCCCc--CEEEEEcCchHHHHHHHHHcCCCeEEEEECC---HHHHHHHHhccCCCeEEEEcchhhCChhHc
Confidence            34444444  489999999999999999985 788888876   2333333332   23455677888888753

>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*

Probab=97.38  E-value=5.9e-05  Score=77.57  Aligned_cols=93  Identities=17%  Similarity=0.045  Sum_probs=58.8

Q ss_pred             CeEEEECCCCcHHHHHHhhC--CCEEEEEecCCChh--HHHHHHHh---------------CC--CCeeeecccCCC-CC
Q 046488          327 RIGLDFSIGTGTFAARMREF--NVTLVSAIINLGAP--FNEMIALR---------------GL--VPLYITINQRVP-FF  384 (480)
Q Consensus       327 R~VLDVGCGtG~fAa~Lae~--gV~Vv~vd~d~~~~--~~~~iA~r---------------gl--ip~~~~~ae~LP-Fp  384 (480)
                      .+|||+|||+|.++..++++  +..+++++.+..+-  +...+...               +.  +.++.+++..+. ..
T Consensus        49 ~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~i~v~~~Da~~~~~~~  128 (378)
T 2dul_A           49 KIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMAER  128 (378)
T ss_dssp             SEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHHHS
T ss_pred             CEEEECCCchhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCCceEEEcCcHHHHHHhc
Confidence            48999999999999999886  46788887663211  11223333               32  223344433221 11


Q ss_pred             CCccchheecccccCccChhcHHHHHHHHHhcccCCcEEEEe
Q 046488          385 DNTLDLIHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWID  426 (480)
Q Consensus       385 d~SFDlV~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~  426 (480)
                      .+.||+|+..    .....   ..++..+.+.|||||+++++
T Consensus       129 ~~~fD~I~lD----P~~~~---~~~l~~a~~~lk~gG~l~vt  163 (378)
T 2dul_A          129 HRYFHFIDLD----PFGSP---MEFLDTALRSAKRRGILGVT  163 (378)
T ss_dssp             TTCEEEEEEC----CSSCC---HHHHHHHHHHEEEEEEEEEE
T ss_pred             cCCCCEEEeC----CCCCH---HHHHHHHHHhcCCCCEEEEE
Confidence            4679999942    21121   35889999999999998876

>4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A*

Probab=97.26  E-value=0.0003  Score=77.24  Aligned_cols=98  Identities=15%  Similarity=0.125  Sum_probs=60.0

Q ss_pred             CCCeEEEECCCCcHH---HHHHhhC-C--CEEEEEecCCChhH-HHHHHHhCC---CCeeeecccCCCCCCCccchheec
Q 046488          325 EIRIGLDFSIGTGTF---AARMREF-N--VTLVSAIINLGAPF-NEMIALRGL---VPLYITINQRVPFFDNTLDLIHTT  394 (480)
Q Consensus       325 ~iR~VLDVGCGtG~f---Aa~Lae~-g--V~Vv~vd~d~~~~~-~~~iA~rgl---ip~~~~~ae~LPFpd~SFDlV~ss  394 (480)
                      ...+|||||||+|-+   +...+++ +  +.|.++.-+..+.. ...+...+.   |.++.+..+.+-.| +.+|+|++-
T Consensus       357 ~~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp~A~~a~~~v~~N~~~dkVtVI~gd~eev~LP-EKVDIIVSE  435 (637)
T 4gqb_A          357 NVQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNPNAVVTLENWQFEEWGSQVTVVSSDMREWVAP-EKADIIVSE  435 (637)
T ss_dssp             CEEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCHHHHHHHHHHHHHTTGGGEEEEESCTTTCCCS-SCEEEEECC
T ss_pred             CCcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHHHHhccCCCeEEEEeCcceeccCC-cccCEEEEE
Confidence            345799999999987   4444443 3  35666664422221 222233332   55667777877655 679999983


Q ss_pred             ccccCccChhcHHHHHHHHHhcccCCcEEE
Q 046488          395 RFLDGWIDFVLLDFILYDWDRVLRPGGLLW  424 (480)
Q Consensus       395 ~vL~h~~d~~~l~~~L~EI~RVLKPGG~fi  424 (480)
                      .. ......+.+..++.-.+|.|||||.++
T Consensus       436 wM-G~fLl~E~mlevL~Ardr~LKPgGimi  464 (637)
T 4gqb_A          436 LL-GSFADNELSPECLDGAQHFLKDDGVSI  464 (637)
T ss_dssp             CC-BTTBGGGCHHHHHHHHGGGEEEEEEEE
T ss_pred             cC-cccccccCCHHHHHHHHHhcCCCcEEc
Confidence            32 222223333457888899999999865

>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*

Probab=97.25  E-value=0.0003  Score=75.48  Aligned_cols=107  Identities=13%  Similarity=0.074  Sum_probs=64.0

Q ss_pred             hHHHhcCCCCCCCCeEEEECCCCcHHHHHHhhC--------------------CCEEEEEecCCChhHHHHHHH-----h
Q 046488          314 LIPEVLDIKPGEIRIGLDFSIGTGTFAARMREF--------------------NVTLVSAIINLGAPFNEMIAL-----R  368 (480)
Q Consensus       314 ~I~~vL~l~~g~iR~VLDVGCGtG~fAa~Lae~--------------------gV~Vv~vd~d~~~~~~~~iA~-----r  368 (480)
                      ++-+++...++  .+|||.+||+|.|...++++                    ...+.+++++.   ....+|+     .
T Consensus       160 ~mv~~l~p~~~--~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~---~~~~lA~~nl~l~  234 (541)
T 2ar0_A          160 TIIHLLKPQPR--EVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVP---GTRRLALMNCLLH  234 (541)
T ss_dssp             HHHHHHCCCTT--CCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCH---HHHHHHHHHHHTT
T ss_pred             HHHHHhccCCC--CeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCH---HHHHHHHHHHHHh
Confidence            33455544444  47999999999998776542                    13577887763   2222322     2


Q ss_pred             CC-------CCeeeecccCC-CCCCCccchheecccccC--cc----------ChhcHHHHHHHHHhcccCCcEEEEe
Q 046488          369 GL-------VPLYITINQRV-PFFDNTLDLIHTTRFLDG--WI----------DFVLLDFILYDWDRVLRPGGLLWID  426 (480)
Q Consensus       369 gl-------ip~~~~~ae~L-PFpd~SFDlV~ss~vL~h--~~----------d~~~l~~~L~EI~RVLKPGG~fiI~  426 (480)
                      +.       ..+..+++-.. ++..+.||+|+++=-+..  +.          .... ..++..+.+.|||||++.+.
T Consensus       235 gi~~~~~~~~~I~~gDtL~~~~~~~~~fD~Vv~NPPf~~~~~~~~~~~~~~~~~~~~-~~Fl~~~l~~Lk~gGr~a~V  311 (541)
T 2ar0_A          235 DIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQ-LCFMQHIIETLHPGGRAAVV  311 (541)
T ss_dssp             TCCCBGGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHH-HHHHHHHHHHEEEEEEEEEE
T ss_pred             CCCccccccCCeEeCCCcccccccccCCeEEEECCCcccccchhhHhhcCCCCCchH-HHHHHHHHHHhCCCCEEEEE
Confidence            32       23344443222 245678999998633221  11          0111 35889999999999998775

>3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A

Probab=97.21  E-value=0.00033  Score=77.70  Aligned_cols=98  Identities=16%  Similarity=0.095  Sum_probs=61.6

Q ss_pred             CCeEEEECCCCcHHHH---HHh---h---------CCCEEEEEecCCChh-HHHHHHHhC---CCCeeeecccCCCCC--
Q 046488          326 IRIGLDFSIGTGTFAA---RMR---E---------FNVTLVSAIINLGAP-FNEMIALRG---LVPLYITINQRVPFF--  384 (480)
Q Consensus       326 iR~VLDVGCGtG~fAa---~La---e---------~gV~Vv~vd~d~~~~-~~~~iA~rg---lip~~~~~ae~LPFp--  384 (480)
                      ...|||||||+|.+..   ..+   .         ..+.|++++.+..+. .+......+   .+.++.+..+.+..+  
T Consensus       410 ~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~~~l~~~~~Ng~~d~VtVI~gd~eev~lp~~  489 (745)
T 3ua3_A          410 TVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAIVTLKYMNVRTWKRRVTIIESDMRSLPGIAK  489 (745)
T ss_dssp             EEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHHHHHHHHHHHTTTTCSEEEESCGGGHHHHHH
T ss_pred             CcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHHHHHHHHHhcCCCCeEEEEeCchhhcccccc
Confidence            3589999999999842   222   1         123677776542111 122222233   366677778877764  


Q ss_pred             ---CCccchheecccccCccChhcHHHHHHHHHhcccCCcEEE
Q 046488          385 ---DNTLDLIHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLW  424 (480)
Q Consensus       385 ---d~SFDlV~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fi  424 (480)
                         .+.+|+|++-.. -...+.+.....|.-+.|.|||||.++
T Consensus       490 ~~~~ekVDIIVSElm-Gsfl~nEL~pe~Ld~v~r~Lkp~Gi~i  531 (745)
T 3ua3_A          490 DRGFEQPDIIVSELL-GSFGDNELSPECLDGVTGFLKPTTISI  531 (745)
T ss_dssp             HTTCCCCSEEEECCC-BTTBGGGSHHHHHHTTGGGSCTTCEEE
T ss_pred             cCCCCcccEEEEecc-ccccchhccHHHHHHHHHhCCCCcEEE
Confidence               688999998433 223344434567888899999999865

>2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli}

Probab=97.20  E-value=0.00052  Score=67.00  Aligned_cols=57  Identities=16%  Similarity=0.128  Sum_probs=35.2

Q ss_pred             ccchheecccccCccChhc-HHHHHHHHHhcccCCcEEEEeeccCChhhHHHHHHHHHHcCceee
Q 046488          387 TLDLIHTTRFLDGWIDFVL-LDFILYDWDRVLRPGGLLWIDSFFCAKEDMNDYLEVFKMLKYKKH  450 (480)
Q Consensus       387 SFDlV~ss~vL~h~~d~~~-l~~~L~EI~RVLKPGG~fiI~~f~~~~edL~~~~~~l~~lGfkkl  450 (480)
                      .||+|+... +..-..++. -..+|.++.|+|||||+|+.  |... .   .+...+...||...
T Consensus       173 ~~D~iflD~-fsp~~~p~lw~~~~l~~l~~~L~pGG~l~t--ysaa-~---~vrr~L~~aGF~v~  230 (257)
T 2qy6_A          173 KVDAWFLDG-FAPAKNPDMWTQNLFNAMARLARPGGTLAT--FTSA-G---FVRRGLQEAGFTMQ  230 (257)
T ss_dssp             CEEEEEECS-SCTTTCGGGCCHHHHHHHHHHEEEEEEEEE--SCCB-H---HHHHHHHHHTEEEE
T ss_pred             eEEEEEECC-CCcccChhhcCHHHHHHHHHHcCCCcEEEE--EeCC-H---HHHHHHHHCCCEEE
Confidence            799999732 221111110 14589999999999999774  3322 2   34456667799743

>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}

Probab=97.18  E-value=0.00027  Score=69.77  Aligned_cols=65  Identities=14%  Similarity=0.107  Sum_probs=43.9

Q ss_pred             HhcCCCCCCCCeEEEECCCCcHHHHHHhhCCCE----EEEEecCCChhHHHHHHHh--CCCCeeeecccCCCCCC
Q 046488          317 EVLDIKPGEIRIGLDFSIGTGTFAARMREFNVT----LVSAIINLGAPFNEMIALR--GLVPLYITINQRVPFFD  385 (480)
Q Consensus       317 ~vL~l~~g~iR~VLDVGCGtG~fAa~Lae~gV~----Vv~vd~d~~~~~~~~iA~r--glip~~~~~ae~LPFpd  385 (480)
                      +.+++.++  .+|||||||+|.++..|++++..    +++++++.  .+......+  ..+.++.+++..++|++
T Consensus        36 ~~~~~~~~--~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~--~~l~~a~~~~~~~v~~i~~D~~~~~~~~  106 (279)
T 3uzu_A           36 AAIRPERG--ERMVEIGPGLGALTGPVIARLATPGSPLHAVELDR--DLIGRLEQRFGELLELHAGDALTFDFGS  106 (279)
T ss_dssp             HHHCCCTT--CEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCH--HHHHHHHHHHGGGEEEEESCGGGCCGGG
T ss_pred             HhcCCCCc--CEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCH--HHHHHHHHhcCCCcEEEECChhcCChhH
Confidence            34455555  38999999999999999987655    88887652  333322222  23556677788888765

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=97.13  E-value=0.0009  Score=73.99  Aligned_cols=99  Identities=11%  Similarity=-0.046  Sum_probs=57.3

Q ss_pred             CeEEEECCCCcHHHHHHhhC--------------------------------------------CCEEEEEecCCChh--
Q 046488          327 RIGLDFSIGTGTFAARMREF--------------------------------------------NVTLVSAIINLGAP--  360 (480)
Q Consensus       327 R~VLDVGCGtG~fAa~Lae~--------------------------------------------gV~Vv~vd~d~~~~--  360 (480)
                      ..|||.+||+|+++..++..                                            ...+++++.+..+-  
T Consensus       192 ~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~~~~~~i~G~Did~~av~~  271 (703)
T 3v97_A          192 TPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAEYSSHFYGSDSDARVIQR  271 (703)
T ss_dssp             SCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEESCHHHHHH
T ss_pred             CeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhccccCCccEEEEECCHHHHHH
Confidence            47999999999998766542                                            14678888763211  


Q ss_pred             HHHHHHHhCC---CCeeeecccCC--CCCCCccchheec--ccccCccChhcHHHHH---HHHHhcccCCcEEEEe
Q 046488          361 FNEMIALRGL---VPLYITINQRV--PFFDNTLDLIHTT--RFLDGWIDFVLLDFIL---YDWDRVLRPGGLLWID  426 (480)
Q Consensus       361 ~~~~iA~rgl---ip~~~~~ae~L--PFpd~SFDlV~ss--~vL~h~~d~~~l~~~L---~EI~RVLKPGG~fiI~  426 (480)
                      +...+...|.   +.+..+++..+  |+.+++||+|+++  +... +.+...+..++   .++.+.+.|||.+++.
T Consensus       272 A~~N~~~agv~~~i~~~~~D~~~~~~~~~~~~~d~Iv~NPPYG~R-lg~~~~l~~ly~~l~~~lk~~~~g~~~~il  346 (703)
T 3v97_A          272 ARTNARLAGIGELITFEVKDVAQLTNPLPKGPYGTVLSNPPYGER-LDSEPALIALHSLLGRIMKNQFGGWNLSLF  346 (703)
T ss_dssp             HHHHHHHTTCGGGEEEEECCGGGCCCSCTTCCCCEEEECCCCCC----CCHHHHHHHHHHHHHHHHHCTTCEEEEE
T ss_pred             HHHHHHHcCCCCceEEEECChhhCccccccCCCCEEEeCCCcccc-ccchhHHHHHHHHHHHHHHhhCCCCeEEEE
Confidence            1122223333   33445555555  5555689999997  3221 22222223344   4555556689999885

>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}

Probab=97.01  E-value=0.0028  Score=60.11  Aligned_cols=93  Identities=12%  Similarity=-0.030  Sum_probs=57.7

Q ss_pred             CCeEEEECCCCcHHHHHHhhC-CCEEEEEecCCCh--hHHHHHHHhCC-----CCeeeecccC---------------CC
Q 046488          326 IRIGLDFSIGTGTFAARMREF-NVTLVSAIINLGA--PFNEMIALRGL-----VPLYITINQR---------------VP  382 (480)
Q Consensus       326 iR~VLDVGCGtG~fAa~Lae~-gV~Vv~vd~d~~~--~~~~~iA~rgl-----ip~~~~~ae~---------------LP  382 (480)
                      .++||++|||  ..+..|++. +-.+++++.+...  .+...++..+.     +.+.++.+..               ++
T Consensus        31 a~~VLEiGtG--ySTl~lA~~~~g~VvtvE~d~~~~~~ar~~l~~~g~~~~~~I~~~~gda~~~~~wg~p~~~~~~~~l~  108 (202)
T 3cvo_A           31 AEVILEYGSG--GSTVVAAELPGKHVTSVESDRAWARMMKAWLAANPPAEGTEVNIVWTDIGPTGDWGHPVSDAKWRSYP  108 (202)
T ss_dssp             CSEEEEESCS--HHHHHHHTSTTCEEEEEESCHHHHHHHHHHHHHSCCCTTCEEEEEECCCSSBCGGGCBSSSTTGGGTT
T ss_pred             CCEEEEECch--HHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCCCCceEEEEeCchhhhcccccccchhhhhHH
Confidence            3589999985  566677765 5688888765321  12233444453     3344444221               23


Q ss_pred             --------C-CCCccchheecccccCccChhcHHHHHHHHHhcccCCcEEEEeec
Q 046488          383 --------F-FDNTLDLIHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDSF  428 (480)
Q Consensus       383 --------F-pd~SFDlV~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~f  428 (480)
                              . ..++||+|+...-.     .   ...+..+.+.|||||+++++++
T Consensus       109 ~~~~~i~~~~~~~~fDlIfIDg~k-----~---~~~~~~~l~~l~~GG~Iv~DNv  155 (202)
T 3cvo_A          109 DYPLAVWRTEGFRHPDVVLVDGRF-----R---VGCALATAFSITRPVTLLFDDY  155 (202)
T ss_dssp             HHHHGGGGCTTCCCCSEEEECSSS-----H---HHHHHHHHHHCSSCEEEEETTG
T ss_pred             HHhhhhhccccCCCCCEEEEeCCC-----c---hhHHHHHHHhcCCCeEEEEeCC
Confidence                    2 23789999975421     1   2467778899999999988873

>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*

Probab=96.99  E-value=0.00042  Score=71.82  Aligned_cols=93  Identities=13%  Similarity=-0.005  Sum_probs=58.2

Q ss_pred             CeEEEECCCCcHHHHHHhhC--C-CEEEEEecCCChh--HHHHHHHhCC----CCeeeecccC-CC-CCCCccchheecc
Q 046488          327 RIGLDFSIGTGTFAARMREF--N-VTLVSAIINLGAP--FNEMIALRGL----VPLYITINQR-VP-FFDNTLDLIHTTR  395 (480)
Q Consensus       327 R~VLDVGCGtG~fAa~Lae~--g-V~Vv~vd~d~~~~--~~~~iA~rgl----ip~~~~~ae~-LP-Fpd~SFDlV~ss~  395 (480)
                      .+|||++||+|.++..++.+  | ..+++++.+..+.  +.+.+...+.    +.++.+++.. +. -..+.||+|++.=
T Consensus        54 ~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~~l~~~~~~~fD~V~lDP  133 (392)
T 3axs_A           54 VKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNIPEDRYEIHGMEANFFLRKEWGFGFDYVDLDP  133 (392)
T ss_dssp             EEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHHHSCCSSCEEEEEECC
T ss_pred             CEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHhhCCCCcEEEECC
Confidence            48999999999999999884  5 4577777652111  1123333343    2233344322 21 2256899999643


Q ss_pred             cccCccChhcHHHHHHHHHhcccCCcEEEEe
Q 046488          396 FLDGWIDFVLLDFILYDWDRVLRPGGLLWID  426 (480)
Q Consensus       396 vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~  426 (480)
                          ....   ..++..+.+.|+|||+++++
T Consensus       134 ----~g~~---~~~l~~a~~~Lk~gGll~~t  157 (392)
T 3axs_A          134 ----FGTP---VPFIESVALSMKRGGILSLT  157 (392)
T ss_dssp             ----SSCC---HHHHHHHHHHEEEEEEEEEE
T ss_pred             ----CcCH---HHHHHHHHHHhCCCCEEEEE
Confidence                1111   34888999999999998886

>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*

Probab=96.93  E-value=0.00051  Score=68.63  Aligned_cols=73  Identities=21%  Similarity=0.254  Sum_probs=47.4

Q ss_pred             HhcCCCCCCCCeEEEECCCCcHHHHHHhhC--CCEEEEEecCCChhHHHHHHHh------CCCCeeeecccCCCC--CC-
Q 046488          317 EVLDIKPGEIRIGLDFSIGTGTFAARMREF--NVTLVSAIINLGAPFNEMIALR------GLVPLYITINQRVPF--FD-  385 (480)
Q Consensus       317 ~vL~l~~g~iR~VLDVGCGtG~fAa~Lae~--gV~Vv~vd~d~~~~~~~~iA~r------glip~~~~~ae~LPF--pd-  385 (480)
                      +.|.+.++.  +|||+|||+|.++..++++  +..++++|.+.  .+.. .|.+      ..+.++.++...++.  .+ 
T Consensus        20 ~~L~~~~g~--~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~--~al~-~A~~~~~~~g~~v~~v~~d~~~l~~~l~~~   94 (301)
T 1m6y_A           20 EFLKPEDEK--IILDCTVGEGGHSRAILEHCPGCRIIGIDVDS--EVLR-IAEEKLKEFSDRVSLFKVSYREADFLLKTL   94 (301)
T ss_dssp             HHHCCCTTC--EEEETTCTTSHHHHHHHHHCTTCEEEEEESCH--HHHH-HHHHHTGGGTTTEEEEECCGGGHHHHHHHT
T ss_pred             HhcCCCCCC--EEEEEeCCcCHHHHHHHHHCCCCEEEEEECCH--HHHH-HHHHHHHhcCCcEEEEECCHHHHHHHHHhc
Confidence            344555553  8999999999999999986  57888888762  3332 2222      123455566666542  11 


Q ss_pred             --Cccchheec
Q 046488          386 --NTLDLIHTT  394 (480)
Q Consensus       386 --~SFDlV~ss  394 (480)
                        ++||.|++.
T Consensus        95 g~~~~D~Vl~D  105 (301)
T 1m6y_A           95 GIEKVDGILMD  105 (301)
T ss_dssp             TCSCEEEEEEE
T ss_pred             CCCCCCEEEEc
Confidence              579998864

>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A

Probab=96.92  E-value=0.00051  Score=66.71  Aligned_cols=72  Identities=7%  Similarity=0.020  Sum_probs=44.6

Q ss_pred             HhcCCCCCCCCeEEEECCCCcHHHHHHhhCCCE--EEEEecCCChhHHHHHHHhCC-----CCeeeecccCCCCCCC---
Q 046488          317 EVLDIKPGEIRIGLDFSIGTGTFAARMREFNVT--LVSAIINLGAPFNEMIALRGL-----VPLYITINQRVPFFDN---  386 (480)
Q Consensus       317 ~vL~l~~g~iR~VLDVGCGtG~fAa~Lae~gV~--Vv~vd~d~~~~~~~~iA~rgl-----ip~~~~~ae~LPFpd~---  386 (480)
                      +.+++.++.  +|||||||+|.++. ++. +..  +++++++.  .+ ...+.+..     +.++.+++..+++++.   
T Consensus        15 ~~~~~~~~~--~VLEIG~G~G~lt~-l~~-~~~~~v~avEid~--~~-~~~a~~~~~~~~~v~~i~~D~~~~~~~~~~~~   87 (252)
T 1qyr_A           15 SAINPQKGQ--AMVEIGPGLAALTE-PVG-ERLDQLTVIELDR--DL-AARLQTHPFLGPKLTIYQQDAMTFNFGELAEK   87 (252)
T ss_dssp             HHHCCCTTC--CEEEECCTTTTTHH-HHH-TTCSCEEEECCCH--HH-HHHHHTCTTTGGGEEEECSCGGGCCHHHHHHH
T ss_pred             HhcCCCCcC--EEEEECCCCcHHHH-hhh-CCCCeEEEEECCH--HH-HHHHHHHhccCCceEEEECchhhCCHHHhhcc
Confidence            344555553  79999999999999 754 456  77877652  33 33444432     3445667777776542   


Q ss_pred             --ccchheecc
Q 046488          387 --TLDLIHTTR  395 (480)
Q Consensus       387 --SFDlV~ss~  395 (480)
                        ..|.|+++-
T Consensus        88 ~~~~~~vvsNl   98 (252)
T 1qyr_A           88 MGQPLRVFGNL   98 (252)
T ss_dssp             HTSCEEEEEEC
T ss_pred             cCCceEEEECC
Confidence              345666543

>2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus}

Probab=96.87  E-value=0.002  Score=64.07  Aligned_cols=117  Identities=15%  Similarity=0.048  Sum_probs=73.2

Q ss_pred             CeEEEECCCCcHHHHHHhhC-------CCEEEEEecCCC----------------------------hhHHHHHHHhCC-
Q 046488          327 RIGLDFSIGTGTFAARMREF-------NVTLVSAIINLG----------------------------APFNEMIALRGL-  370 (480)
Q Consensus       327 R~VLDVGCGtG~fAa~Lae~-------gV~Vv~vd~d~~----------------------------~~~~~~iA~rgl-  370 (480)
                      .+||++|+.+|..+..|++.       +-.+++++....                            ..+...+++.|. 
T Consensus       108 g~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~~~ar~n~~~~gl~  187 (282)
T 2wk1_A          108 GDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEEEVRRNFRNYDLL  187 (282)
T ss_dssp             CEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCHHHHHHHHHHTTCC
T ss_pred             CcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccchhHHHHHHHHHHHcCCC
Confidence            37999999999987776531       345666653211                            001223333333 


Q ss_pred             ---CCeeeec-ccCCC-CCCCccchheecccccCccChhcHHHHHHHHHhcccCCcEEEEeeccCChhhHHHHHHHHHHc
Q 046488          371 ---VPLYITI-NQRVP-FFDNTLDLIHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDSFFCAKEDMNDYLEVFKML  445 (480)
Q Consensus       371 ---ip~~~~~-ae~LP-Fpd~SFDlV~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~f~~~~edL~~~~~~l~~l  445 (480)
                         +.++.++ .+.|| +++++||+|+...-.   ....  ..+|..+.+.|+|||+++++++.......+.+.++.+..
T Consensus       188 ~~~I~li~Gda~etL~~~~~~~~d~vfIDaD~---y~~~--~~~Le~~~p~L~pGGiIv~DD~~~~~G~~~Av~Ef~~~~  262 (282)
T 2wk1_A          188 DEQVRFLPGWFKDTLPTAPIDTLAVLRMDGDL---YEST--WDTLTNLYPKVSVGGYVIVDDYMMCPPCKDAVDEYRAKF  262 (282)
T ss_dssp             STTEEEEESCHHHHSTTCCCCCEEEEEECCCS---HHHH--HHHHHHHGGGEEEEEEEEESSCTTCHHHHHHHHHHHHHT
T ss_pred             cCceEEEEeCHHHHHhhCCCCCEEEEEEcCCc---cccH--HHHHHHHHhhcCCCEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence               3455565 34455 346789999975432   1111  357899999999999999998743344556677888877


Q ss_pred             Cce
Q 046488          446 KYK  448 (480)
Q Consensus       446 Gfk  448 (480)
                      |.+
T Consensus       263 ~i~  265 (282)
T 2wk1_A          263 DIA  265 (282)
T ss_dssp             TCC
T ss_pred             CCc
Confidence            643

>3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus}

Probab=96.86  E-value=0.0031  Score=63.60  Aligned_cols=111  Identities=12%  Similarity=-0.052  Sum_probs=61.2

Q ss_pred             CCCCCCCCeEEEECCCCcHHHHHHhhC-CCE-EEEEecCCC-h--hHHHHHHHhCCCCeeee-cccCCCCCCCccchhee
Q 046488          320 DIKPGEIRIGLDFSIGTGTFAARMREF-NVT-LVSAIINLG-A--PFNEMIALRGLVPLYIT-INQRVPFFDNTLDLIHT  393 (480)
Q Consensus       320 ~l~~g~iR~VLDVGCGtG~fAa~Lae~-gV~-Vv~vd~d~~-~--~~~~~iA~rglip~~~~-~ae~LPFpd~SFDlV~s  393 (480)
                      .+.++.  +|||+||++|+|+.+.+.. |+. |+++++... +  |...+...-.++.+..+ +...++-  ..+|+|+|
T Consensus        91 ~l~~~~--~VlDLGaapGGwsq~~~~~~gv~~V~avdvG~~~he~P~~~~ql~w~lV~~~~~~Dv~~l~~--~~~D~ivc  166 (321)
T 3lkz_A           91 FLEPVG--KVIDLGCGRGGWCYYMATQKRVQEVRGYTKGGPGHEEPQLVQSYGWNIVTMKSGVDVFYRPS--ECCDTLLC  166 (321)
T ss_dssp             SCCCCE--EEEEETCTTCHHHHHHTTCTTEEEEEEECCCSTTSCCCCCCCBTTGGGEEEECSCCTTSSCC--CCCSEEEE
T ss_pred             CCCCCC--EEEEeCCCCCcHHHHHHhhcCCCEEEEEEcCCCCccCcchhhhcCCcceEEEeccCHhhCCC--CCCCEEEE
Confidence            366664  8999999999999977765 665 667765321 1  11100000011222222 2344443  66999999


Q ss_pred             cccccCccChh----cHHHHHHHHHhcccCC-cEEEEeeccCChhhH
Q 046488          394 TRFLDGWIDFV----LLDFILYDWDRVLRPG-GLLWIDSFFCAKEDM  435 (480)
Q Consensus       394 s~vL~h~~d~~----~l~~~L~EI~RVLKPG-G~fiI~~f~~~~edL  435 (480)
                      .-. .--..+.    .--.+|.=+.+.|++| |-|++--+..-.++.
T Consensus       167 Dig-eSs~~~~ve~~Rtl~vLel~~~wL~~~~~~f~~KVl~pY~~~v  212 (321)
T 3lkz_A          167 DIG-ESSSSAEVEEHRTIRVLEMVEDWLHRGPREFCVKVLCPYMPKV  212 (321)
T ss_dssp             CCC-CCCSCHHHHHHHHHHHHHHHHHHHTTCCCEEEEEESCTTSHHH
T ss_pred             ECc-cCCCChhhhhhHHHHHHHHHHHHhccCCCcEEEEEcCCCChHH
Confidence            665 2222211    1112455556888999 888885444433444

>3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei}

Probab=96.85  E-value=0.002  Score=69.26  Aligned_cols=107  Identities=20%  Similarity=0.155  Sum_probs=62.2

Q ss_pred             hHHHhcCCCCCCCCeEEEECCCCcHHHHHHhhC-----------------CCEEEEEecCCChhHHHHHH-----HhCCC
Q 046488          314 LIPEVLDIKPGEIRIGLDFSIGTGTFAARMREF-----------------NVTLVSAIINLGAPFNEMIA-----LRGLV  371 (480)
Q Consensus       314 ~I~~vL~l~~g~iR~VLDVGCGtG~fAa~Lae~-----------------gV~Vv~vd~d~~~~~~~~iA-----~rgli  371 (480)
                      ++-+++...++   +|||.+||+|.|...+++.                 ...+.+++++.   ....+|     ..+.-
T Consensus       236 lmv~ll~p~~~---~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~---~~~~lA~~Nl~l~gi~  309 (544)
T 3khk_A          236 LIVEMLEPYKG---RVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNP---TTWKLAAMNMVIRGID  309 (544)
T ss_dssp             HHHHHHCCCSE---EEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCH---HHHHHHHHHHHHTTCC
T ss_pred             HHHHHHhcCCC---eEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCH---HHHHHHHHHHHHhCCC
Confidence            44455554333   7999999999987765431                 35667777652   222222     33321


Q ss_pred             -Ce--eeec-ccCCCCCCCccchheec--ccccCccC-----------------------hh-cHHHHHHHHHhcccCCc
Q 046488          372 -PL--YITI-NQRVPFFDNTLDLIHTT--RFLDGWID-----------------------FV-LLDFILYDWDRVLRPGG  421 (480)
Q Consensus       372 -p~--~~~~-ae~LPFpd~SFDlV~ss--~vL~h~~d-----------------------~~-~l~~~L~EI~RVLKPGG  421 (480)
                       .+  ..++ ...-.+.+..||+|+++  +....|..                       .. .--.++..+.+.|||||
T Consensus       310 ~~i~i~~gDtL~~~~~~~~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~~g~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gG  389 (544)
T 3khk_A          310 FNFGKKNADSFLDDQHPDLRADFVMTNPPFNMKDWWHEKLADDPRWTINTNGEKRILTPPTGNANFAWMLHMLYHLAPTG  389 (544)
T ss_dssp             CBCCSSSCCTTTSCSCTTCCEEEEEECCCSSCCSCCCGGGTTCGGGEECCC--CEECCCCTTCTHHHHHHHHHHTEEEEE
T ss_pred             cccceeccchhcCcccccccccEEEECCCcCCccccchhhhhhhhhhcCcccccccccCCCcchhHHHHHHHHHHhccCc
Confidence             12  3343 22334567899999985  22212211                       00 00147899999999999


Q ss_pred             EEEEe
Q 046488          422 LLWID  426 (480)
Q Consensus       422 ~fiI~  426 (480)
                      ++.+.
T Consensus       390 r~aiV  394 (544)
T 3khk_A          390 SMALL  394 (544)
T ss_dssp             EEEEE
T ss_pred             eEEEE
Confidence            97665

>3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus}

Probab=96.75  E-value=0.0042  Score=66.87  Aligned_cols=100  Identities=15%  Similarity=0.079  Sum_probs=60.1

Q ss_pred             CCeEEEECCCCcHHHHHHhhC-----CCEEEEEecCCChhH--HHHHHHhCCC----CeeeecccCC--C-CCCCccchh
Q 046488          326 IRIGLDFSIGTGTFAARMREF-----NVTLVSAIINLGAPF--NEMIALRGLV----PLYITINQRV--P-FFDNTLDLI  391 (480)
Q Consensus       326 iR~VLDVGCGtG~fAa~Lae~-----gV~Vv~vd~d~~~~~--~~~iA~rgli----p~~~~~ae~L--P-Fpd~SFDlV  391 (480)
                      ..+|||.+||+|+|...++++     ...+.+++++...-.  ...+...|.-    .+..++.-..  | +.+..||+|
T Consensus       222 ~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~~~~I~~gDtL~~d~p~~~~~~fD~I  301 (542)
T 3lkd_A          222 GFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHGVPIENQFLHNADTLDEDWPTQEPTNFDGV  301 (542)
T ss_dssp             TCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCTTTSCSCCSSCCCBSEE
T ss_pred             CCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcCCCcCccceEecceecccccccccccccEE
Confidence            458999999999988776654     567888887632111  1122233431    2334443222  4 457899999


Q ss_pred             eecccc-cCcc------------------C--hhcHHHHHHHHHhccc-CCcEEEEe
Q 046488          392 HTTRFL-DGWI------------------D--FVLLDFILYDWDRVLR-PGGLLWID  426 (480)
Q Consensus       392 ~ss~vL-~h~~------------------d--~~~l~~~L~EI~RVLK-PGG~fiI~  426 (480)
                      +++==+ ..|.                  .  ... -.++..+.+.|| |||++.+.
T Consensus       302 vaNPPf~~~~~~~~~~~~d~rf~~~G~~~~~s~~~-~~Fl~~~l~~Lk~~gGr~a~V  357 (542)
T 3lkd_A          302 LMNPPYSAKWSASSGFMDDPRFSPFGKLAPKSKAD-FAFLLHGYYHLKQDNGVMAIV  357 (542)
T ss_dssp             EECCCTTCCCCCCGGGGGSTTTGGGSSCCCTTCCH-HHHHHHHHHTBCTTTCEEEEE
T ss_pred             EecCCcCCccccchhhhhhhhhhhhhhcCCCchhh-HHHHHHHHHHhCCCceeEEEE
Confidence            985111 1121                  0  001 237899999999 99998664

>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}

Probab=96.62  E-value=0.022  Score=56.96  Aligned_cols=99  Identities=19%  Similarity=0.127  Sum_probs=61.7

Q ss_pred             CCCCeEEEECCCCcHHHHHHhhC-CC-EEEEEecCCChhHHHHHHHh------------CCCCeeeec-ccCCCCCCCcc
Q 046488          324 GEIRIGLDFSIGTGTFAARMREF-NV-TLVSAIINLGAPFNEMIALR------------GLVPLYITI-NQRVPFFDNTL  388 (480)
Q Consensus       324 g~iR~VLDVGCGtG~fAa~Lae~-gV-~Vv~vd~d~~~~~~~~iA~r------------glip~~~~~-ae~LPFpd~SF  388 (480)
                      .+.++||=||.|.|..+..+.++ ++ .++.+++|   +....++++            ..+.++.++ .+-+--.+++|
T Consensus        82 p~pk~VLIiGgGdG~~~revlk~~~v~~v~~VEID---~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l~~~~~~y  158 (294)
T 3o4f_A           82 GHAKHVLIIGGGDGAMLREVTRHKNVESITMVEID---AGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQTSQTF  158 (294)
T ss_dssp             SCCCEEEEESCTTSHHHHHHHTCTTCCEEEEEESC---HHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTTTSCSSCCE
T ss_pred             CCCCeEEEECCCchHHHHHHHHcCCcceEEEEcCC---HHHHHHHHhcCccccccccCCCcEEEEechHHHHHhhccccC
Confidence            34578999999999999999886 43 44455554   333333222            123344555 23344567899


Q ss_pred             chheecccccCccChhc--HHHHHHHHHhcccCCcEEEEe
Q 046488          389 DLIHTTRFLDGWIDFVL--LDFILYDWDRVLRPGGLLWID  426 (480)
Q Consensus       389 DlV~ss~vL~h~~d~~~--l~~~L~EI~RVLKPGG~fiI~  426 (480)
                      |+|+.... ........  -..++..+.|+|+|||.++..
T Consensus       159 DvIi~D~~-dp~~~~~~L~t~eFy~~~~~~L~p~Gv~v~q  197 (294)
T 3o4f_A          159 DVIISDCT-DPIGPGESLFTSAFYEGCKRCLNPGGIFVAQ  197 (294)
T ss_dssp             EEEEESCC-CCCCTTCCSSCCHHHHHHHHTEEEEEEEEEE
T ss_pred             CEEEEeCC-CcCCCchhhcCHHHHHHHHHHhCCCCEEEEe
Confidence            99996432 22111100  024899999999999998874

>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis}

Probab=96.61  E-value=0.00081  Score=70.21  Aligned_cols=66  Identities=15%  Similarity=-0.039  Sum_probs=45.1

Q ss_pred             CeEEEECCCCcHHHHHHhhCCCEEEEEecCCChhHHH----HHHHh--CC--CCeeeecccC-CCC-CCCccchheec
Q 046488          327 RIGLDFSIGTGTFAARMREFNVTLVSAIINLGAPFNE----MIALR--GL--VPLYITINQR-VPF-FDNTLDLIHTT  394 (480)
Q Consensus       327 R~VLDVGCGtG~fAa~Lae~gV~Vv~vd~d~~~~~~~----~iA~r--gl--ip~~~~~ae~-LPF-pd~SFDlV~ss  394 (480)
                      .+|||+|||+|..+..|++.+..|++++.+.  .+..    .+...  |.  +.++.+++.. ++. ++++||+|++.
T Consensus        95 ~~VLDLgcG~G~~al~LA~~g~~V~~VD~s~--~~l~~Ar~N~~~~~~gl~~i~~i~~Da~~~L~~~~~~~fDvV~lD  170 (410)
T 3ll7_A           95 TKVVDLTGGLGIDFIALMSKASQGIYIERND--ETAVAARHNIPLLLNEGKDVNILTGDFKEYLPLIKTFHPDYIYVD  170 (410)
T ss_dssp             CEEEESSCSSSHHHHHHHTTCSEEEEEESCH--HHHHHHHHHHHHHSCTTCEEEEEESCGGGSHHHHHHHCCSEEEEC
T ss_pred             CEEEEeCCCchHHHHHHHhcCCEEEEEECCH--HHHHHHHHhHHHhccCCCcEEEEECcHHHhhhhccCCCceEEEEC
Confidence            4899999999999999999888999988763  2222    22222  33  3445555444 343 35689999984

>2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}

Probab=96.56  E-value=0.0034  Score=57.43  Aligned_cols=81  Identities=17%  Similarity=0.108  Sum_probs=52.6

Q ss_pred             eEEEECCCCc-HHHHHHhh-CCCEEEEEecCCChhHHHHHHHhCCCCeeeecccCCCCCC--CccchheecccccCccCh
Q 046488          328 IGLDFSIGTG-TFAARMRE-FNVTLVSAIINLGAPFNEMIALRGLVPLYITINQRVPFFD--NTLDLIHTTRFLDGWIDF  403 (480)
Q Consensus       328 ~VLDVGCGtG-~fAa~Lae-~gV~Vv~vd~d~~~~~~~~iA~rglip~~~~~ae~LPFpd--~SFDlV~ss~vL~h~~d~  403 (480)
                      +|||||||.| ..|..|++ .|+.|+++|++..+.           .++.++.-. |..+  ..||+|++.+      ++
T Consensus        38 rVlEVG~G~g~~vA~~La~~~g~~V~atDInp~Av-----------~~v~dDiF~-P~~~~Y~~~DLIYsir------PP   99 (153)
T 2k4m_A           38 RVVEVGAGRFLYVSDYIRKHSKVDLVLTDIKPSHG-----------GIVRDDITS-PRMEIYRGAALIYSIR------PP   99 (153)
T ss_dssp             EEEEETCTTCCHHHHHHHHHSCCEEEEECSSCSST-----------TEECCCSSS-CCHHHHTTEEEEEEES------CC
T ss_pred             cEEEEccCCChHHHHHHHHhCCCeEEEEECCcccc-----------ceEEccCCC-CcccccCCcCEEEEcC------CC
Confidence            8999999999 69999997 899999998764221           144444322 3333  4799998644      23


Q ss_pred             hcHHHHHHHHHhcccCCcEEEEeec
Q 046488          404 VLLDFILYDWDRVLRPGGLLWIDSF  428 (480)
Q Consensus       404 ~~l~~~L~EI~RVLKPGG~fiI~~f  428 (480)
                      .+|...+.++.+-.  |.-++|..+
T Consensus       100 ~El~~~i~~lA~~v--~adliI~pL  122 (153)
T 2k4m_A          100 AEIHSSLMRVADAV--GARLIIKPL  122 (153)
T ss_dssp             TTTHHHHHHHHHHH--TCEEEEECB
T ss_pred             HHHHHHHHHHHHHc--CCCEEEEcC
Confidence            33355666666543  455666543

>3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A*

Probab=96.17  E-value=0.061  Score=52.87  Aligned_cols=116  Identities=16%  Similarity=0.047  Sum_probs=62.6

Q ss_pred             CCCCCCCCeEEEECCCCcHHHHHHhhC-CCE-EEEEecCC-Ch--hHHHHHHHhC--CCCeeee-cccCCCCCCCccchh
Q 046488          320 DIKPGEIRIGLDFSIGTGTFAARMREF-NVT-LVSAIINL-GA--PFNEMIALRG--LVPLYIT-INQRVPFFDNTLDLI  391 (480)
Q Consensus       320 ~l~~g~iR~VLDVGCGtG~fAa~Lae~-gV~-Vv~vd~d~-~~--~~~~~iA~rg--lip~~~~-~ae~LPFpd~SFDlV  391 (480)
                      .++++.  +|||+||++|+|+.+.+.+ |+. |+++++.. .+  |...+  .-|  ++.+..+ +...++  ...+|.|
T Consensus        75 ~l~~g~--~VvDLGaapGGWSq~~a~~~g~~~V~avdvG~~ghe~P~~~~--s~gwn~v~fk~gvDv~~~~--~~~~Dtl  148 (267)
T 3p8z_A           75 MVIPEG--RVIDLGCGRGGWSYYCAGLKKVTEVRGYTKGGPGHEEPVPMS--TYGWNIVKLMSGKDVFYLP--PEKCDTL  148 (267)
T ss_dssp             SSCCCE--EEEEESCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCCCCCC--CTTTTSEEEECSCCGGGCC--CCCCSEE
T ss_pred             CCCCCC--EEEEcCCCCCcHHHHHHHhcCCCEEEEEecCCCCccCcchhh--hcCcCceEEEeccceeecC--CccccEE
Confidence            466664  8999999999999977765 654 66666532 11  11100  011  1222223 233343  3669999


Q ss_pred             eecccccCcc---ChhcHHHHHHHHHhcccCCcEEEEeeccCChhhHHHHHHHH
Q 046488          392 HTTRFLDGWI---DFVLLDFILYDWDRVLRPGGLLWIDSFFCAKEDMNDYLEVF  442 (480)
Q Consensus       392 ~ss~vL~h~~---d~~~l~~~L~EI~RVLKPGG~fiI~~f~~~~edL~~~~~~l  442 (480)
                      +|...=..-.   +...--.+|.=+.+.|++ |-|++--+.....+..+..+.+
T Consensus       149 lcDIgeSs~~~~vE~~RtlrvLela~~wL~~-~~fc~KVl~py~p~v~e~l~~l  201 (267)
T 3p8z_A          149 LCDIGESSPSPTVEESRTIRVLKMVEPWLKN-NQFCIKVLNPYMPTVIEHLERL  201 (267)
T ss_dssp             EECCCCCCSCHHHHHHHHHHHHHHHGGGCSS-CEEEEEESCCCSHHHHHHHHHH
T ss_pred             EEecCCCCCChhhhhhHHHHHHHHHHHhccc-CCEEEEEccCCChhHHHHHHHH
Confidence            9965432111   111111255555788898 7888755554444443333333

>4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A*

Probab=96.14  E-value=0.024  Score=58.06  Aligned_cols=113  Identities=19%  Similarity=0.116  Sum_probs=66.1

Q ss_pred             hhhhHHHhcCCCCCCCCeEEEECCCCcHHHHHHhhCCC--EEEEEecCCChhHHHH---HHHh-CC------CCee--ee
Q 046488          311 ADFLIPEVLDIKPGEIRIGLDFSIGTGTFAARMREFNV--TLVSAIINLGAPFNEM---IALR-GL------VPLY--IT  376 (480)
Q Consensus       311 ad~~I~~vL~l~~g~iR~VLDVGCGtG~fAa~Lae~gV--~Vv~vd~d~~~~~~~~---iA~r-gl------ip~~--~~  376 (480)
                      +..+...+|+.++|+  +|||+.+|.|+=+.+|++.+-  .+++.+.+  ......   ...+ +.      ..+.  ..
T Consensus       136 aS~l~~~~L~~~pg~--~VLD~CAaPGGKT~~la~~~~~~~l~A~D~~--~~R~~~l~~~l~r~~~~~~~~~~~v~v~~~  211 (359)
T 4fzv_A          136 ASLLPVLALGLQPGD--IVLDLCAAPGGKTLALLQTGCCRNLAANDLS--PSRIARLQKILHSYVPEEIRDGNQVRVTSW  211 (359)
T ss_dssp             GGHHHHHHHCCCTTE--EEEESSCTTCHHHHHHHHTTCEEEEEEECSC--HHHHHHHHHHHHHHSCTTTTTSSSEEEECC
T ss_pred             HHHHHHHHhCCCCCC--EEEEecCCccHHHHHHHHhcCCCcEEEEcCC--HHHHHHHHHHHHHhhhhhhccCCceEEEeC
Confidence            344555678888876  899999999999988888744  35555543  222211   1111 11      1222  22


Q ss_pred             cccCCC-CCCCccchhee----cc---cccC--------ccCh------hcHHHHHHHHHhcccCCcEEEEee
Q 046488          377 INQRVP-FFDNTLDLIHT----TR---FLDG--------WIDF------VLLDFILYDWDRVLRPGGLLWIDS  427 (480)
Q Consensus       377 ~ae~LP-Fpd~SFDlV~s----s~---vL~h--------~~d~------~~l~~~L~EI~RVLKPGG~fiI~~  427 (480)
                      ++..++ +..+.||.|++    +.   .+..        |...      ..-..+|....+.|||||+++.+.
T Consensus       212 D~~~~~~~~~~~fD~VLlDaPCSg~g~g~~r~~~~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lkpGG~LVYsT  284 (359)
T 4fzv_A          212 DGRKWGELEGDTYDRVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKPGGHVVYST  284 (359)
T ss_dssp             CGGGHHHHSTTCEEEEEEECCCCCHHHHTTCCTTCTTSGGGHHHHHTHHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             chhhcchhccccCCEEEECCccCCCCCcccccChhhhhhCCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEe
Confidence            333332 45689999984    33   1111        1100      001357888899999999988763

>3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus}

Probab=96.07  E-value=0.021  Score=64.55  Aligned_cols=100  Identities=10%  Similarity=-0.113  Sum_probs=57.4

Q ss_pred             CeEEEECCCCcHHHHHHhhCC-----CEEEEEecCCChhHHH--HHHHh-----CCCC--eee-ecccC-CCCCCCccch
Q 046488          327 RIGLDFSIGTGTFAARMREFN-----VTLVSAIINLGAPFNE--MIALR-----GLVP--LYI-TINQR-VPFFDNTLDL  390 (480)
Q Consensus       327 R~VLDVGCGtG~fAa~Lae~g-----V~Vv~vd~d~~~~~~~--~iA~r-----glip--~~~-~~ae~-LPFpd~SFDl  390 (480)
                      .+|||.|||+|.|+..++++.     ..+.+++++...-...  +....     ..+.  .+. ++... -+.....||+
T Consensus       323 ~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~LlhGi~~~~I~~dD~L~~~~~~~~kFDV  402 (878)
T 3s1s_A          323 EVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQLVSSNNAPTITGEDVCSLNPEDFANVSV  402 (878)
T ss_dssp             CEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTSTTTCBTTBCCEEECCCGGGCCGGGGTTEEE
T ss_pred             CEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHhhhhcCCCcceEEecchhcccccccCCCCE
Confidence            489999999999999888752     4577887763221111  11111     1111  111 22222 2345678999


Q ss_pred             heecccccC-ccCh-------------------------hcHHHHHHHHHhcccCCcEEEEe
Q 046488          391 IHTTRFLDG-WIDF-------------------------VLLDFILYDWDRVLRPGGLLWID  426 (480)
Q Consensus       391 V~ss~vL~h-~~d~-------------------------~~l~~~L~EI~RVLKPGG~fiI~  426 (480)
                      |+++==+.. +...                         .....++..+.+.|||||++.+.
T Consensus       403 VIgNPPYg~~~~~~~e~kd~~~r~~~g~p~~p~s~~G~~DLy~aFIe~Al~lLKpGGrLAfI  464 (878)
T 3s1s_A          403 VVMNPPYVSGVTDPAIKRKFAHKIIQLTGNRPQTLFGQIGVEALFLELVTELVQDGTVISAI  464 (878)
T ss_dssp             EEECCBCCSSCCCHHHHHHHHHHHHHHHSSCCSSCSSSCCHHHHHHHHHHHHSCTTCEEEEE
T ss_pred             EEECCCccccccchhhhhhHHHHhhhhccccccccccccchHHHHHHHHHHhcCCCcEEEEE
Confidence            998522211 1100                         01134678899999999998775

>3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus}

Probab=95.97  E-value=0.028  Score=56.82  Aligned_cols=133  Identities=15%  Similarity=0.070  Sum_probs=75.4

Q ss_pred             CeEEEECC------CCcHHHHH-HhhCCCEEEEEecCCChhHHHHHHHhCCCC-eeeecccCCCCCCCccchheeccccc
Q 046488          327 RIGLDFSI------GTGTFAAR-MREFNVTLVSAIINLGAPFNEMIALRGLVP-LYITINQRVPFFDNTLDLIHTTRFLD  398 (480)
Q Consensus       327 R~VLDVGC------GtG~fAa~-Lae~gV~Vv~vd~d~~~~~~~~iA~rglip-~~~~~ae~LPFpd~SFDlV~ss~vL~  398 (480)
                      .+|||+|+      -.|++..+ +...|..++++|+..-..         ..+ .+.+++..+.. .+.||+|+|..+=.
T Consensus       111 mrVLDLGA~s~kg~APGS~VLr~~~p~g~~VVavDL~~~~s---------da~~~IqGD~~~~~~-~~k~DLVISDMAPN  180 (344)
T 3r24_A          111 MRVIHFGAGSDKGVAPGTAVLRQWLPTGTLLVDSDLNDFVS---------DADSTLIGDCATVHT-ANKWDLIISDMYDP  180 (344)
T ss_dssp             CEEEEESCCCTTSBCHHHHHHHHHSCTTCEEEEEESSCCBC---------SSSEEEESCGGGEEE-SSCEEEEEECCCCT
T ss_pred             CEEEeCCCCCCCCCCCcHHHHHHhCCCCcEEEEeeCccccc---------CCCeEEEcccccccc-CCCCCEEEecCCCC
Confidence            48999996      56775332 323345788988763211         112 24566544332 47899999854311


Q ss_pred             --CccC--h----hcHHHHHHHHHhcccCCcEEEEeeccCChhhHHHHHHHHHHcCceeeEEEEeeccCCCCcceeEEEE
Q 046488          399 --GWID--F----VLLDFILYDWDRVLRPGGLLWIDSFFCAKEDMNDYLEVFKMLKYKKHKWVVVPKRDKDDREVFFSAV  470 (480)
Q Consensus       399 --h~~d--~----~~l~~~L~EI~RVLKPGG~fiI~~f~~~~edL~~~~~~l~~lGfkkl~W~~~~k~d~~~~E~~lsav  470 (480)
                        ...+  .    ...+.++.=+.++|+|||.|++--|....+  +.+.++.+  .|+.++-.. ........|+|+.++
T Consensus       181 tTG~~D~d~~Rs~~L~ElALdfA~~~LkpGGsFvVKVFQGsg~--~~L~~lrk--~F~~VK~fK-~ASRa~SsEvYLVG~  255 (344)
T 3r24_A          181 RTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEHSWN--ADLYKLMG--HFSWWTAFV-TNVNASSSEAFLIGA  255 (344)
T ss_dssp             TSCSSCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSSSCC--HHHHHHHT--TEEEEEEEE-EGGGTTSSCEEEEEE
T ss_pred             cCCccccchhHHHHHHHHHHHHHHHhCcCCCEEEEEEecCCCH--HHHHHHHh--hCCeEEEEC-CCCCCCCeeEEEEee
Confidence              1111  1    112344444567999999999877765553  23444443  477654332 111125679999887


Q ss_pred             EEeC
Q 046488          471 LEKP  474 (480)
Q Consensus       471 ~qKP  474 (480)
                      --|-
T Consensus       256 gfKg  259 (344)
T 3r24_A          256 NYLG  259 (344)
T ss_dssp             EECS
T ss_pred             eccC
Confidence            6554

>3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A*

Probab=94.81  E-value=0.16  Score=52.54  Aligned_cols=120  Identities=15%  Similarity=0.061  Sum_probs=68.5

Q ss_pred             CCCeEEEECCCCcHHHHHHhhCCC-EEEEEecCCChhHHHHHHHhCC---------------CCeeeecc----cCCCCC
Q 046488          325 EIRIGLDFSIGTGTFAARMREFNV-TLVSAIINLGAPFNEMIALRGL---------------VPLYITIN----QRVPFF  384 (480)
Q Consensus       325 ~iR~VLDVGCGtG~fAa~Lae~gV-~Vv~vd~d~~~~~~~~iA~rgl---------------ip~~~~~a----e~LPFp  384 (480)
                      +.++||=||.|.|..+..+.++.. .+..+++|   +....++++-.               +.++++++    ++.+-.
T Consensus       205 ~pkrVLIIGgGdG~~~revlkh~~~~V~~VEID---p~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~~~  281 (381)
T 3c6k_A          205 TGKDVLILGGGDGGILCEIVKLKPKMVTMVEID---QMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKE  281 (381)
T ss_dssp             TTCEEEEEECTTCHHHHHHHTTCCSEEEEEESC---HHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHH
T ss_pred             CCCeEEEECCCcHHHHHHHHhcCCceeEEEccC---HHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhhhhc
Confidence            357999999999999999988643 34445554   44444444321               11223331    122223


Q ss_pred             CCccchheecccccCc--cCh----h--cHHHHHHHHHhcccCCcEEEEee--ccCChhhHHHHHHHHHHcCceee
Q 046488          385 DNTLDLIHTTRFLDGW--IDF----V--LLDFILYDWDRVLRPGGLLWIDS--FFCAKEDMNDYLEVFKMLKYKKH  450 (480)
Q Consensus       385 d~SFDlV~ss~vL~h~--~d~----~--~l~~~L~EI~RVLKPGG~fiI~~--f~~~~edL~~~~~~l~~lGfkkl  450 (480)
                      .+.||+|+.... ...  .++    .  --..++..+.|+|+|||.++...  .+ ..+.+..+.+.++++ |..+
T Consensus       282 ~~~yDvIIvDl~-D~~~s~~p~g~a~~Lft~eFy~~~~~~L~p~GVlv~Q~~s~~-~~~~~~~i~~tl~~v-F~~v  354 (381)
T 3c6k_A          282 GREFDYVINDLT-AVPISTSPEEDSTWEFLRLILDLSMKVLKQDGKYFTQGNCVN-LTEALSLYEEQLGRL-YCPV  354 (381)
T ss_dssp             TCCEEEEEEECC-SSCCCCC----CHHHHHHHHHHHHHHTEEEEEEEEEEEEETT-CHHHHHHHHHHHTTS-SSCE
T ss_pred             cCceeEEEECCC-CCcccCcccCcchHHHHHHHHHHHHHhcCCCCEEEEecCCCc-chhHHHHHHHHHHHh-CCcc
Confidence            568999996421 111  011    0  01346788999999999987642  11 134445566666665 4433

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=94.51  E-value=0.026  Score=55.33  Aligned_cols=30  Identities=20%  Similarity=0.159  Sum_probs=27.6

Q ss_pred             CeEEEECCCCcHHHHHHhhCCCEEEEEecC
Q 046488          327 RIGLDFSIGTGTFAARMREFNVTLVSAIIN  356 (480)
Q Consensus       327 R~VLDVGCGtG~fAa~Lae~gV~Vv~vd~d  356 (480)
                      .+|||.+||+|+++..+++.|..+++++++
T Consensus       237 ~~vlD~f~GsGt~~~~a~~~g~~~~g~e~~  266 (297)
T 2zig_A          237 DVVLDPFAGTGTTLIAAARWGRRALGVELV  266 (297)
T ss_dssp             CEEEETTCTTTHHHHHHHHTTCEEEEEESC
T ss_pred             CEEEECCCCCCHHHHHHHHcCCeEEEEeCC
Confidence            389999999999999999999999999876

>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A*

Probab=92.88  E-value=0.024  Score=70.78  Aligned_cols=43  Identities=21%  Similarity=0.193  Sum_probs=15.4

Q ss_pred             CCCCCccchheecccccCccChhcHHHHHHHHHhcccCCcEEEEee
Q 046488          382 PFFDNTLDLIHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDS  427 (480)
Q Consensus       382 PFpd~SFDlV~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~  427 (480)
                      +|...+||+|+++.+++-..+.   ...|..+++.|||||++++..
T Consensus      1306 ~~~~~~ydlvia~~vl~~t~~~---~~~l~~~~~lL~p~G~l~~~e 1348 (2512)
T 2vz8_A         1306 PGSLGKADLLVCNCALATLGDP---AVAVGNMAATLKEGGFLLLHT 1348 (2512)
T ss_dssp             C-----CCEEEEECC-----------------------CCEEEEEE
T ss_pred             cCCCCceeEEEEcccccccccH---HHHHHHHHHhcCCCcEEEEEe
Confidence            4567889999999988644333   468999999999999988753

>1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23

Probab=92.74  E-value=0.17  Score=50.45  Aligned_cols=37  Identities=19%  Similarity=0.327  Sum_probs=30.9

Q ss_pred             hcCCCCCCCCeEEEECCCCcHHHHHHhhCCCEEEEEecC
Q 046488          318 VLDIKPGEIRIGLDFSIGTGTFAARMREFNVTLVSAIIN  356 (480)
Q Consensus       318 vL~l~~g~iR~VLDVGCGtG~fAa~Lae~gV~Vv~vd~d  356 (480)
                      .|.++++.  .+||.+||.|..+..+++++..++++|.|
T Consensus        17 ~L~~~~gg--~~VD~T~G~GGHS~~il~~~g~VigiD~D   53 (285)
T 1wg8_A           17 LLAVRPGG--VYVDATLGGAGHARGILERGGRVIGLDQD   53 (285)
T ss_dssp             HHTCCTTC--EEEETTCTTSHHHHHHHHTTCEEEEEESC
T ss_pred             hhCCCCCC--EEEEeCCCCcHHHHHHHHCCCEEEEEeCC
Confidence            44566654  89999999999999999987789998876

>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida}

Probab=91.66  E-value=0.5  Score=47.73  Aligned_cols=102  Identities=17%  Similarity=0.082  Sum_probs=59.5

Q ss_pred             hcCCCCCCCCeEEEECCCC-cHHHHHHhhC-CC-EEEEEecCCChhHHHHHHHhCCCCeeeecc-cCC------C-CCCC
Q 046488          318 VLDIKPGEIRIGLDFSIGT-GTFAARMREF-NV-TLVSAIINLGAPFNEMIALRGLVPLYITIN-QRV------P-FFDN  386 (480)
Q Consensus       318 vL~l~~g~iR~VLDVGCGt-G~fAa~Lae~-gV-~Vv~vd~d~~~~~~~~iA~rglip~~~~~a-e~L------P-Fpd~  386 (480)
                      ..++++|+  +||-+|+|. |.++..+++. |. .++.++.+   +.....+++-+.. .+... +.+      . ....
T Consensus       180 ~~~~~~g~--~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~---~~~~~~a~~lGa~-~i~~~~~~~~~~~~~~~~~g~  253 (398)
T 2dph_A          180 SAGVKPGS--HVYIAGAGPVGRCAAAGARLLGAACVIVGDQN---PERLKLLSDAGFE-TIDLRNSAPLRDQIDQILGKP  253 (398)
T ss_dssp             HTTCCTTC--EEEEECCSHHHHHHHHHHHHHTCSEEEEEESC---HHHHHHHHTTTCE-EEETTSSSCHHHHHHHHHSSS
T ss_pred             HcCCCCCC--EEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC---HHHHHHHHHcCCc-EEcCCCcchHHHHHHHHhCCC
Confidence            44566665  899999986 8888888774 87 78887754   2333344443332 22211 111      0 1123


Q ss_pred             ccchheecccccC--------ccChhcHHHHHHHHHhcccCCcEEEEeec
Q 046488          387 TLDLIHTTRFLDG--------WIDFVLLDFILYDWDRVLRPGGLLWIDSF  428 (480)
Q Consensus       387 SFDlV~ss~vL~h--------~~d~~~l~~~L~EI~RVLKPGG~fiI~~f  428 (480)
                      .||+|+-.-.-..        ..++   ...+.+..+.|||||++++...
T Consensus       254 g~Dvvid~~g~~~~~~~~~~~~~~~---~~~~~~~~~~l~~gG~iv~~G~  300 (398)
T 2dph_A          254 EVDCGVDAVGFEAHGLGDEANTETP---NGALNSLFDVVRAGGAIGIPGI  300 (398)
T ss_dssp             CEEEEEECSCTTCBCSGGGTTSBCT---THHHHHHHHHEEEEEEEECCSC
T ss_pred             CCCEEEECCCCcccccccccccccc---HHHHHHHHHHHhcCCEEEEecc
Confidence            6898884332110        0011   1368999999999999876543

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1

Probab=91.62  E-value=0.46  Score=47.37  Aligned_cols=96  Identities=14%  Similarity=0.051  Sum_probs=56.8

Q ss_pred             cCCCCCCCCeEEEECCCC-cHHHHHHhhC-CC-EEEEEecCCChhHHHHHHHhCCCCeeeecc-----cCC-CCCCCccc
Q 046488          319 LDIKPGEIRIGLDFSIGT-GTFAARMREF-NV-TLVSAIINLGAPFNEMIALRGLVPLYITIN-----QRV-PFFDNTLD  389 (480)
Q Consensus       319 L~l~~g~iR~VLDVGCGt-G~fAa~Lae~-gV-~Vv~vd~d~~~~~~~~iA~rglip~~~~~a-----e~L-PFpd~SFD  389 (480)
                      .++++++  +||-+|+|. |.++..+++. |. .++.++.+   +.....+++-+....+...     +.+ ...++.||
T Consensus       186 ~~~~~g~--~VlV~GaG~vG~~a~qlak~~Ga~~Vi~~~~~---~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~~~gg~D  260 (371)
T 1f8f_A          186 LKVTPAS--SFVTWGAGAVGLSALLAAKVCGASIIIAVDIV---ESRLELAKQLGATHVINSKTQDPVAAIKEITDGGVN  260 (371)
T ss_dssp             TCCCTTC--EEEEESCSHHHHHHHHHHHHHTCSEEEEEESC---HHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTSCEE
T ss_pred             cCCCCCC--EEEEECCCHHHHHHHHHHHHcCCCeEEEECCC---HHHHHHHHHcCCCEEecCCccCHHHHHHHhcCCCCc
Confidence            3456664  899999886 7788888764 77 57777644   2233333332233222211     111 01123688


Q ss_pred             hheecccccCccChhcHHHHHHHHHhcccCCcEEEEeec
Q 046488          390 LIHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDSF  428 (480)
Q Consensus       390 lV~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~f  428 (480)
                      +|+-.-.     .    ...+.+..+.|||||++++...
T Consensus       261 ~vid~~g-----~----~~~~~~~~~~l~~~G~iv~~G~  290 (371)
T 1f8f_A          261 FALESTG-----S----PEILKQGVDALGILGKIAVVGA  290 (371)
T ss_dssp             EEEECSC-----C----HHHHHHHHHTEEEEEEEEECCC
T ss_pred             EEEECCC-----C----HHHHHHHHHHHhcCCEEEEeCC
Confidence            8874322     1    2378899999999999987643

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A

Probab=91.15  E-value=0.5  Score=46.88  Aligned_cols=96  Identities=14%  Similarity=0.048  Sum_probs=57.3

Q ss_pred             hcCCCCCCCCeEEEECCCC-cHHHHHHhh-CCC-EEEEEecCCChhHHHHHHHhCCCCeeeecc--------cCC-CCCC
Q 046488          318 VLDIKPGEIRIGLDFSIGT-GTFAARMRE-FNV-TLVSAIINLGAPFNEMIALRGLVPLYITIN--------QRV-PFFD  385 (480)
Q Consensus       318 vL~l~~g~iR~VLDVGCGt-G~fAa~Lae-~gV-~Vv~vd~d~~~~~~~~iA~rglip~~~~~a--------e~L-PFpd  385 (480)
                      ..++++|+  +||-+|+|. |.++..+++ .|. .++.++.+   +.....+++-+....+...        +.+ ....
T Consensus       166 ~~~~~~g~--~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~---~~~~~~a~~lGa~~vi~~~~~~~~~~~~~i~~~~~  240 (356)
T 1pl8_A          166 RGGVTLGH--KVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLS---ATRLSKAKEIGADLVLQISKESPQEIARKVEGQLG  240 (356)
T ss_dssp             HHTCCTTC--EEEEECCSHHHHHHHHHHHHTTCSEEEEEESC---HHHHHHHHHTTCSEEEECSSCCHHHHHHHHHHHHT
T ss_pred             hcCCCCCC--EEEEECCCHHHHHHHHHHHHcCCCEEEEECCC---HHHHHHHHHhCCCEEEcCcccccchHHHHHHHHhC
Confidence            34566665  799999875 777777776 487 78777654   2333344443333222211        010 0001


Q ss_pred             CccchheecccccCccChhcHHHHHHHHHhcccCCcEEEEee
Q 046488          386 NTLDLIHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDS  427 (480)
Q Consensus       386 ~SFDlV~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~  427 (480)
                      +.||+|+-.-.     .    ...+.+..++|||||++++..
T Consensus       241 ~g~D~vid~~g-----~----~~~~~~~~~~l~~~G~iv~~G  273 (356)
T 1pl8_A          241 CKPEVTIECTG-----A----EASIQAGIYATRSGGTLVLVG  273 (356)
T ss_dssp             SCCSEEEECSC-----C----HHHHHHHHHHSCTTCEEEECS
T ss_pred             CCCCEEEECCC-----C----hHHHHHHHHHhcCCCEEEEEe
Confidence            45888874321     1    236888999999999998764

>3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A*

Probab=90.93  E-value=1.5  Score=44.14  Aligned_cols=65  Identities=11%  Similarity=0.008  Sum_probs=41.0

Q ss_pred             cCCCC-CCCccchheecccccCccChhcH-HHHHHHHHhcccCCcEEEEeeccCChhhHHHHHHHHHHcCceee
Q 046488          379 QRVPF-FDNTLDLIHTTRFLDGWIDFVLL-DFILYDWDRVLRPGGLLWIDSFFCAKEDMNDYLEVFKMLKYKKH  450 (480)
Q Consensus       379 e~LPF-pd~SFDlV~ss~vL~h~~d~~~l-~~~L~EI~RVLKPGG~fiI~~f~~~~edL~~~~~~l~~lGfkkl  450 (480)
                      +.++- .+..||+|+-. .|..-.+++.+ +.+|..|+|.++|||.|.-  |. ...   .+...+..+||.--
T Consensus       177 ~~l~~l~~~~~Da~flD-gFsP~kNPeLWs~e~f~~l~~~~~pgg~laT--Yt-aag---~VRR~L~~aGF~V~  243 (308)
T 3vyw_A          177 KRIKEVENFKADAVFHD-AFSPYKNPELWTLDFLSLIKERIDEKGYWVS--YS-SSL---SVRKSLLTLGFKVG  243 (308)
T ss_dssp             HHGGGCCSCCEEEEEEC-CSCTTTSGGGGSHHHHHHHHTTEEEEEEEEE--SC-CCH---HHHHHHHHTTCEEE
T ss_pred             HHHhhhcccceeEEEeC-CCCcccCcccCCHHHHHHHHHHhCCCcEEEE--Ee-CcH---HHHHHHHHCCCEEE
Confidence            33442 35589999863 34433333211 3599999999999998653  33 332   34457888999844

>3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus}

Probab=90.57  E-value=1.5  Score=46.83  Aligned_cols=107  Identities=23%  Similarity=0.228  Sum_probs=58.3

Q ss_pred             hHHHhcCCCCCCCCeEEEECCCCcHHHHHHhhC---------------CCEEEEEecCCChhHHHHH-----HHhCCC--
Q 046488          314 LIPEVLDIKPGEIRIGLDFSIGTGTFAARMREF---------------NVTLVSAIINLGAPFNEMI-----ALRGLV--  371 (480)
Q Consensus       314 ~I~~vL~l~~g~iR~VLDVGCGtG~fAa~Lae~---------------gV~Vv~vd~d~~~~~~~~i-----A~rgli--  371 (480)
                      ++-+++...++.  +|+|-.||||+|.....++               ...+.|.+.+.   ....+     ...|.-  
T Consensus       208 lmv~l~~p~~~~--~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~---~~~~la~mNl~lhg~~~~  282 (530)
T 3ufb_A          208 FMVEVMDPQLGE--SVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKS---LPYLLVQMNLLLHGLEYP  282 (530)
T ss_dssp             HHHHHHCCCTTC--CEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSH---HHHHHHHHHHHHHTCSCC
T ss_pred             HHHHhhccCCCC--EEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccH---HHHHHHHHHHHhcCCccc
Confidence            455666655553  7999999999997655431               23466776652   22222     234432  


Q ss_pred             CeeeecccCCCC----CCCccchheeccccc--Cc-------c-----ChhcHHHHHHHHHhccc-------CCcEEEEe
Q 046488          372 PLYITINQRVPF----FDNTLDLIHTTRFLD--GW-------I-----DFVLLDFILYDWDRVLR-------PGGLLWID  426 (480)
Q Consensus       372 p~~~~~ae~LPF----pd~SFDlV~ss~vL~--h~-------~-----d~~~l~~~L~EI~RVLK-------PGG~fiI~  426 (480)
                      .+..++.-..|+    ....||+|+++==+.  .+       .     .... -.++.-+.+.||       |||++.+.
T Consensus       283 ~I~~~dtL~~~~~~~~~~~~fD~Il~NPPf~~~~~~~~~~~~~~~~~~~~~~-~~Fl~~~l~~Lk~~~~~l~~gGr~avV  361 (530)
T 3ufb_A          283 RIDPENSLRFPLREMGDKDRVDVILTNPPFGGEEEKGILGNFPEDMQTAETA-MLFLQLIMRKLKRPGHGSDNGGRAAVV  361 (530)
T ss_dssp             EEECSCTTCSCGGGCCGGGCBSEEEECCCSSCBCCHHHHTTSCGGGCCCBHH-HHHHHHHHHHBCCTTSSSSSCCEEEEE
T ss_pred             cccccccccCchhhhcccccceEEEecCCCCccccccccccCchhcccchhH-HHHHHHHHHHhhhhhhccCCCceEEEE
Confidence            223333323332    245799999862221  10       0     0111 235666777776       79998765

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*

Probab=89.83  E-value=0.83  Score=45.76  Aligned_cols=98  Identities=13%  Similarity=0.106  Sum_probs=58.6

Q ss_pred             HhcCCCCCCCCeEEEECCCC-cHHHHHHhh-CCC-EEEEEecCCChhHHHHHHHhCCCCeeeec-----cc---C-CCCC
Q 046488          317 EVLDIKPGEIRIGLDFSIGT-GTFAARMRE-FNV-TLVSAIINLGAPFNEMIALRGLVPLYITI-----NQ---R-VPFF  384 (480)
Q Consensus       317 ~vL~l~~g~iR~VLDVGCGt-G~fAa~Lae-~gV-~Vv~vd~d~~~~~~~~iA~rglip~~~~~-----ae---~-LPFp  384 (480)
                      +...+++|+  +||=+|+|. |.++..+++ .|+ .++.++.+   +.....+++-+....+..     .+   . ....
T Consensus       176 ~~~~~~~g~--~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~---~~~~~~a~~lGa~~vi~~~~~~~~~~i~~~~~~~  250 (370)
T 4ej6_A          176 DLSGIKAGS--TVAILGGGVIGLLTVQLARLAGATTVILSTRQ---ATKRRLAEEVGATATVDPSAGDVVEAIAGPVGLV  250 (370)
T ss_dssp             HHHTCCTTC--EEEEECCSHHHHHHHHHHHHTTCSEEEEECSC---HHHHHHHHHHTCSEEECTTSSCHHHHHHSTTSSS
T ss_pred             HhcCCCCCC--EEEEECCCHHHHHHHHHHHHcCCCEEEEECCC---HHHHHHHHHcCCCEEECCCCcCHHHHHHhhhhcc
Confidence            344567775  788899865 677777776 487 77776543   233334444333332221     11   1 1122


Q ss_pred             CCccchheecccccCccChhcHHHHHHHHHhcccCCcEEEEeec
Q 046488          385 DNTLDLIHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDSF  428 (480)
Q Consensus       385 d~SFDlV~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~f  428 (480)
                      ++.||+|+-.-.     .    ...+.+..+.|+|||++++...
T Consensus       251 ~gg~Dvvid~~G-----~----~~~~~~~~~~l~~~G~vv~~G~  285 (370)
T 4ej6_A          251 PGGVDVVIECAG-----V----AETVKQSTRLAKAGGTVVILGV  285 (370)
T ss_dssp             TTCEEEEEECSC-----C----HHHHHHHHHHEEEEEEEEECSC
T ss_pred             CCCCCEEEECCC-----C----HHHHHHHHHHhccCCEEEEEec
Confidence            347898884321     1    2478999999999999988643

>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11

Probab=89.78  E-value=0.27  Score=47.10  Aligned_cols=30  Identities=23%  Similarity=0.379  Sum_probs=27.5

Q ss_pred             CeEEEECCCCcHHHHHHhhCCCEEEEEecC
Q 046488          327 RIGLDFSIGTGTFAARMREFNVTLVSAIIN  356 (480)
Q Consensus       327 R~VLDVGCGtG~fAa~Lae~gV~Vv~vd~d  356 (480)
                      ..|||..||+|+.+.+..+.|..+++++++
T Consensus       214 ~~vlD~f~GsGtt~~~a~~~gr~~ig~e~~  243 (260)
T 1g60_A          214 DLVLDCFMGSGTTAIVAKKLGRNFIGCDMN  243 (260)
T ss_dssp             CEEEESSCTTCHHHHHHHHTTCEEEEEESC
T ss_pred             CEEEECCCCCCHHHHHHHHcCCeEEEEeCC
Confidence            389999999999999999999999999876

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1

Probab=89.52  E-value=1.6  Score=43.07  Aligned_cols=96  Identities=11%  Similarity=0.104  Sum_probs=56.2

Q ss_pred             hcCCCCCCCCeEEEECCCC-cHHHHHHhh-CCCEEEEEecCCChhHHHHHHHhCCCCeeeecc--cCCC------CC---
Q 046488          318 VLDIKPGEIRIGLDFSIGT-GTFAARMRE-FNVTLVSAIINLGAPFNEMIALRGLVPLYITIN--QRVP------FF---  384 (480)
Q Consensus       318 vL~l~~g~iR~VLDVGCGt-G~fAa~Lae-~gV~Vv~vd~d~~~~~~~~iA~rglip~~~~~a--e~LP------Fp---  384 (480)
                      ..++++|+  +||-+|+|. |.++..+++ .|..++.++.+   +.....+++-+....+...  +.+.      ..   
T Consensus       163 ~~~~~~g~--~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~---~~~~~~~~~lGa~~~~~~~~~~~~~~~i~~~~~~~~  237 (352)
T 1e3j_A          163 RAGVQLGT--TVLVIGAGPIGLVSVLAAKAYGAFVVCTARS---PRRLEVAKNCGADVTLVVDPAKEEESSIIERIRSAI  237 (352)
T ss_dssp             HHTCCTTC--EEEEECCSHHHHHHHHHHHHTTCEEEEEESC---HHHHHHHHHTTCSEEEECCTTTSCHHHHHHHHHHHS
T ss_pred             hcCCCCCC--EEEEECCCHHHHHHHHHHHHcCCEEEEEcCC---HHHHHHHHHhCCCEEEcCcccccHHHHHHHHhcccc
Confidence            34566665  799999874 677777776 48887776643   2333334443333322211  1110      11   


Q ss_pred             CCccchheecccccCccChhcHHHHHHHHHhcccCCcEEEEee
Q 046488          385 DNTLDLIHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDS  427 (480)
Q Consensus       385 d~SFDlV~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~  427 (480)
                      .+.+|+|+-...     .    ...+.+..+.|+|||++++..
T Consensus       238 g~g~D~vid~~g-----~----~~~~~~~~~~l~~~G~iv~~G  271 (352)
T 1e3j_A          238 GDLPNVTIDCSG-----N----EKCITIGINITRTGGTLMLVG  271 (352)
T ss_dssp             SSCCSEEEECSC-----C----HHHHHHHHHHSCTTCEEEECS
T ss_pred             CCCCCEEEECCC-----C----HHHHHHHHHHHhcCCEEEEEe
Confidence            245787774321     1    236888999999999988764

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*

Probab=89.41  E-value=0.61  Score=45.77  Aligned_cols=94  Identities=15%  Similarity=0.131  Sum_probs=56.5

Q ss_pred             CCCCCCCCeEEEECCCC-cHHHHHHhh-CCCEEEEEecCCChhHHHHHHHhCCCCeeeeccc-C----CCCCCCccchhe
Q 046488          320 DIKPGEIRIGLDFSIGT-GTFAARMRE-FNVTLVSAIINLGAPFNEMIALRGLVPLYITINQ-R----VPFFDNTLDLIH  392 (480)
Q Consensus       320 ~l~~g~iR~VLDVGCGt-G~fAa~Lae-~gV~Vv~vd~d~~~~~~~~iA~rglip~~~~~ae-~----LPFpd~SFDlV~  392 (480)
                      .+++|+  +||-+|+|. |.++..+++ .|..++.++.+   +.....+++-+....+...+ .    +--..+.+|+|+
T Consensus       163 ~~~~g~--~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~---~~~~~~~~~lGa~~~i~~~~~~~~~~~~~~~g~~d~vi  237 (340)
T 3s2e_A          163 DTRPGQ--WVVISGIGGLGHVAVQYARAMGLRVAAVDID---DAKLNLARRLGAEVAVNARDTDPAAWLQKEIGGAHGVL  237 (340)
T ss_dssp             TCCTTS--EEEEECCSTTHHHHHHHHHHTTCEEEEEESC---HHHHHHHHHTTCSEEEETTTSCHHHHHHHHHSSEEEEE
T ss_pred             CCCCCC--EEEEECCCHHHHHHHHHHHHCCCeEEEEeCC---HHHHHHHHHcCCCEEEeCCCcCHHHHHHHhCCCCCEEE
Confidence            455664  788899875 888888876 48888887754   23333444433333332111 0    000112577766


Q ss_pred             ecccccCccChhcHHHHHHHHHhcccCCcEEEEee
Q 046488          393 TTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDS  427 (480)
Q Consensus       393 ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~  427 (480)
                      -...     .    ...+.+..+.|+|||++++..
T Consensus       238 d~~g-----~----~~~~~~~~~~l~~~G~iv~~G  263 (340)
T 3s2e_A          238 VTAV-----S----PKAFSQAIGMVRRGGTIALNG  263 (340)
T ss_dssp             ESSC-----C----HHHHHHHHHHEEEEEEEEECS
T ss_pred             EeCC-----C----HHHHHHHHHHhccCCEEEEeC
Confidence            3211     1    347899999999999988763

>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1

Probab=89.12  E-value=1.3  Score=39.63  Aligned_cols=94  Identities=15%  Similarity=0.063  Sum_probs=52.9

Q ss_pred             cCCCCCCCCeEEEECC--CCcHHHHHHhh-CCCEEEEEecCCChhHHHHHHHhCCCCeeeecc-----cCC-C-CCCCcc
Q 046488          319 LDIKPGEIRIGLDFSI--GTGTFAARMRE-FNVTLVSAIINLGAPFNEMIALRGLVPLYITIN-----QRV-P-FFDNTL  388 (480)
Q Consensus       319 L~l~~g~iR~VLDVGC--GtG~fAa~Lae-~gV~Vv~vd~d~~~~~~~~iA~rglip~~~~~a-----e~L-P-Fpd~SF  388 (480)
                      .+++++  ++||.+|+  |.|..++.++. .|..++.++.+  .... ..+++-+.....+..     +.+ . ...+.+
T Consensus        34 ~~~~~g--~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~--~~~~-~~~~~~g~~~~~d~~~~~~~~~~~~~~~~~~~  108 (198)
T 1pqw_A           34 GRLSPG--ERVLIHSATGGVGMAAVSIAKMIGARIYTTAGS--DAKR-EMLSRLGVEYVGDSRSVDFADEILELTDGYGV  108 (198)
T ss_dssp             SCCCTT--CEEEETTTTSHHHHHHHHHHHHHTCEEEEEESS--HHHH-HHHHTTCCSEEEETTCSTHHHHHHHHTTTCCE
T ss_pred             hCCCCC--CEEEEeeCCChHHHHHHHHHHHcCCEEEEEeCC--HHHH-HHHHHcCCCEEeeCCcHHHHHHHHHHhCCCCC
Confidence            345555  48999995  55666555554 58888877654  1222 223332222222211     000 0 112458


Q ss_pred             chheecccccCccChhcHHHHHHHHHhcccCCcEEEEee
Q 046488          389 DLIHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDS  427 (480)
Q Consensus       389 DlV~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~  427 (480)
                      |+|+.+..      .    ..+.+..+.|||||++++..
T Consensus       109 D~vi~~~g------~----~~~~~~~~~l~~~G~~v~~g  137 (198)
T 1pqw_A          109 DVVLNSLA------G----EAIQRGVQILAPGGRFIELG  137 (198)
T ss_dssp             EEEEECCC------T----HHHHHHHHTEEEEEEEEECS
T ss_pred             eEEEECCc------h----HHHHHHHHHhccCCEEEEEc
Confidence            88875321      1    26889999999999988764

>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1

Probab=89.05  E-value=1.2  Score=44.80  Aligned_cols=101  Identities=15%  Similarity=0.106  Sum_probs=58.7

Q ss_pred             cCCCCCCCCeEEEECCCC-cHHHHHHhh-CCC-EEEEEecCCChhHHHHHHHhCCCCeeeecccC------CC--CCCCc
Q 046488          319 LDIKPGEIRIGLDFSIGT-GTFAARMRE-FNV-TLVSAIINLGAPFNEMIALRGLVPLYITINQR------VP--FFDNT  387 (480)
Q Consensus       319 L~l~~g~iR~VLDVGCGt-G~fAa~Lae-~gV-~Vv~vd~d~~~~~~~~iA~rglip~~~~~ae~------LP--Fpd~S  387 (480)
                      .++++|+  +||-+|+|. |.++..+++ .|. .++.++.+   +...+.+++-+.. .+...+.      +.  ...+.
T Consensus       181 ~~~~~g~--~VlV~GaG~vG~~aiqlAk~~Ga~~Vi~~~~~---~~~~~~a~~lGa~-~i~~~~~~~~~~~v~~~t~g~g  254 (398)
T 1kol_A          181 AGVGPGS--TVYVAGAGPVGLAAAASARLLGAAVVIVGDLN---PARLAHAKAQGFE-IADLSLDTPLHEQIAALLGEPE  254 (398)
T ss_dssp             TTCCTTC--EEEEECCSHHHHHHHHHHHHTTCSEEEEEESC---HHHHHHHHHTTCE-EEETTSSSCHHHHHHHHHSSSC
T ss_pred             cCCCCCC--EEEEECCcHHHHHHHHHHHHCCCCeEEEEcCC---HHHHHHHHHcCCc-EEccCCcchHHHHHHHHhCCCC
Confidence            4566665  799999875 778888876 477 57777644   2333344443333 2221111      10  12246


Q ss_pred             cchheeccccc---------CccChhcHHHHHHHHHhcccCCcEEEEeec
Q 046488          388 LDLIHTTRFLD---------GWIDFVLLDFILYDWDRVLRPGGLLWIDSF  428 (480)
Q Consensus       388 FDlV~ss~vL~---------h~~d~~~l~~~L~EI~RVLKPGG~fiI~~f  428 (480)
                      +|+|+-.-.-.         |+.++   ...+.+..++|||||++++...
T Consensus       255 ~Dvvid~~G~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~G~iv~~G~  301 (398)
T 1kol_A          255 VDCAVDAVGFEARGHGHEGAKHEAP---ATVLNSLMQVTRVAGKIGIPGL  301 (398)
T ss_dssp             EEEEEECCCTTCBCSSTTGGGSBCT---THHHHHHHHHEEEEEEEEECSC
T ss_pred             CCEEEECCCCcccccccccccccch---HHHHHHHHHHHhcCCEEEEecc
Confidence            88888433211         22222   2378999999999999987653

>1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26

Probab=88.88  E-value=3.2  Score=41.50  Aligned_cols=139  Identities=13%  Similarity=0.122  Sum_probs=71.5

Q ss_pred             eEEEECCCCcHHHHHHhhCCC--E-EEEEecCCChhHHHHHHHh-CCCCeeeecccCCC---CCCCccchheeccc---c
Q 046488          328 IGLDFSIGTGTFAARMREFNV--T-LVSAIINLGAPFNEMIALR-GLVPLYITINQRVP---FFDNTLDLIHTTRF---L  397 (480)
Q Consensus       328 ~VLDVGCGtG~fAa~Lae~gV--~-Vv~vd~d~~~~~~~~iA~r-glip~~~~~ae~LP---Fpd~SFDlV~ss~v---L  397 (480)
                      +|||+-||.|.++..+.+.|+  . +.+++.+  ..+....... .....+.++...+.   ++...+|+|+...=   +
T Consensus         4 ~v~dLFaG~Gg~~~g~~~~G~~~~~v~~~E~d--~~a~~~~~~N~~~~~~~~~Di~~~~~~~~~~~~~D~l~~gpPCq~f   81 (343)
T 1g55_A            4 RVLELYSGVGGMHHALRESCIPAQVVAAIDVN--TVANEVYKYNFPHTQLLAKTIEGITLEEFDRLSFDMILMSPPCQPF   81 (343)
T ss_dssp             EEEEETCTTCHHHHHHHHHTCSEEEEEEECCC--HHHHHHHHHHCTTSCEECSCGGGCCHHHHHHHCCSEEEECCC----
T ss_pred             eEEEeCcCccHHHHHHHHCCCCceEEEEEeCC--HHHHHHHHHhccccccccCCHHHccHhHcCcCCcCEEEEcCCCcch
Confidence            799999999999999998883  3 4455443  3333333322 12334445444432   11225899987522   1


Q ss_pred             cCccC----hhcHHHHHHHHHhcc---c--CCcEEE--EeeccCChhhHHHHHHHHHHcCceeeEEEEeeccC----CCC
Q 046488          398 DGWID----FVLLDFILYDWDRVL---R--PGGLLW--IDSFFCAKEDMNDYLEVFKMLKYKKHKWVVVPKRD----KDD  462 (480)
Q Consensus       398 ~h~~d----~~~l~~~L~EI~RVL---K--PGG~fi--I~~f~~~~edL~~~~~~l~~lGfkkl~W~~~~k~d----~~~  462 (480)
                      .....    .+....++.|+.|++   +  |--.++  +..+. ....++.+.+.++.+||. +.|.+..-.+    +.+
T Consensus        82 S~ag~~~g~~d~r~~l~~~~~~~i~~~~~~P~~~~~ENV~~l~-~~~~~~~i~~~l~~~GY~-v~~~vl~a~~~GvPQ~R  159 (343)
T 1g55_A           82 TRIGRQGDMTDSRTNSFLHILDILPRLQKLPKYILLENVKGFE-VSSTRDLLIQTIENCGFQ-YQEFLLSPTSLGIPNSR  159 (343)
T ss_dssp             --------------CHHHHHHHHGGGCSSCCSEEEEEEETTGG-GSHHHHHHHHHHHHTTEE-EEEEEECGGGGTCSCCC
T ss_pred             hhcCCcCCccCccchHHHHHHHHHHHhcCCCCEEEEeCCcccc-CHHHHHHHHHHHHHCCCe-eEEEEEEHHHCCCCCcc
Confidence            11100    010123555555554   5  654333  22332 234456778888999996 4565543322    234


Q ss_pred             cceeEEEE
Q 046488          463 REVFFSAV  470 (480)
Q Consensus       463 ~E~~lsav  470 (480)
                      .-+|+.++
T Consensus       160 ~R~~iv~~  167 (343)
T 1g55_A          160 LRYFLIAK  167 (343)
T ss_dssp             CEEEEEEE
T ss_pred             cEEEEEEE
Confidence            44555553

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}

Probab=88.47  E-value=1.1  Score=44.11  Aligned_cols=92  Identities=20%  Similarity=0.138  Sum_probs=56.3

Q ss_pred             CCCCCCCCeEEEECCCC-cHHHHHHhh-CCCEEEEEecCCChhHHHHHHHhCCCCeeeecccCCCCCCCccchheecccc
Q 046488          320 DIKPGEIRIGLDFSIGT-GTFAARMRE-FNVTLVSAIINLGAPFNEMIALRGLVPLYITINQRVPFFDNTLDLIHTTRFL  397 (480)
Q Consensus       320 ~l~~g~iR~VLDVGCGt-G~fAa~Lae-~gV~Vv~vd~d~~~~~~~~iA~rglip~~~~~ae~LPFpd~SFDlV~ss~vL  397 (480)
                      ++++|+  +||-+|+|. |.++..+++ .|..++.++.+.  ... ..+++-+....+...+.+   .+.+|+|+-.-. 
T Consensus       173 ~~~~g~--~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~--~~~-~~~~~lGa~~v~~~~~~~---~~~~D~vid~~g-  243 (348)
T 3two_A          173 KVTKGT--KVGVAGFGGLGSMAVKYAVAMGAEVSVFARNE--HKK-QDALSMGVKHFYTDPKQC---KEELDFIISTIP-  243 (348)
T ss_dssp             TCCTTC--EEEEESCSHHHHHHHHHHHHTTCEEEEECSSS--TTH-HHHHHTTCSEEESSGGGC---CSCEEEEEECCC-
T ss_pred             CCCCCC--EEEEECCcHHHHHHHHHHHHCCCeEEEEeCCH--HHH-HHHHhcCCCeecCCHHHH---hcCCCEEEECCC-
Confidence            566665  788899875 777777776 488888877553  222 233343333332222222   126888874322 


Q ss_pred             cCccChhcHHHHHHHHHhcccCCcEEEEeec
Q 046488          398 DGWIDFVLLDFILYDWDRVLRPGGLLWIDSF  428 (480)
Q Consensus       398 ~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~f  428 (480)
                          ..    ..+.+..+.|||||++++...
T Consensus       244 ----~~----~~~~~~~~~l~~~G~iv~~G~  266 (348)
T 3two_A          244 ----TH----YDLKDYLKLLTYNGDLALVGL  266 (348)
T ss_dssp             ----SC----CCHHHHHTTEEEEEEEEECCC
T ss_pred             ----cH----HHHHHHHHHHhcCCEEEEECC
Confidence                12    147888999999999988643

>2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ...

Probab=88.38  E-value=11  Score=37.47  Aligned_cols=138  Identities=14%  Similarity=0.131  Sum_probs=71.3

Q ss_pred             CeEEEECCCCcHHHHHHhhCCCEEEE-EecCCChhHHHHHHHh-CCCCeeeecccCCCC-CCCccchheecccccC----
Q 046488          327 RIGLDFSIGTGTFAARMREFNVTLVS-AIINLGAPFNEMIALR-GLVPLYITINQRVPF-FDNTLDLIHTTRFLDG----  399 (480)
Q Consensus       327 R~VLDVGCGtG~fAa~Lae~gV~Vv~-vd~d~~~~~~~~iA~r-glip~~~~~ae~LPF-pd~SFDlV~ss~vL~h----  399 (480)
                      .+|||+-||.|.++..+.+.|..++. ++.+  ..+....... ....  .++...+.- .-..+|+|+...=-..    
T Consensus        12 ~~~~dLFaG~Gg~~~g~~~aG~~~v~~~e~d--~~a~~t~~~N~~~~~--~~Di~~~~~~~~~~~D~l~~gpPCQ~fS~a   87 (327)
T 2c7p_A           12 LRFIDLFAGLGGFRLALESCGAECVYSNEWD--KYAQEVYEMNFGEKP--EGDITQVNEKTIPDHDILCAGFPCQAFSIS   87 (327)
T ss_dssp             CEEEEETCTTTHHHHHHHHTTCEEEEEECCC--HHHHHHHHHHHSCCC--BSCGGGSCGGGSCCCSEEEEECCCTTTCTT
T ss_pred             CcEEEECCCcCHHHHHHHHCCCeEEEEEeCC--HHHHHHHHHHcCCCC--cCCHHHcCHhhCCCCCEEEECCCCCCcchh
Confidence            47999999999999999999987643 3333  3333322222 1111  333222211 1124899986421111    


Q ss_pred             -----ccC-hhcHHHHHHHHHhcccCCcEEEEe---eccCC--hhhHHHHHHHHHHcCceeeEEEEeeccC----CCCcc
Q 046488          400 -----WID-FVLLDFILYDWDRVLRPGGLLWID---SFFCA--KEDMNDYLEVFKMLKYKKHKWVVVPKRD----KDDRE  464 (480)
Q Consensus       400 -----~~d-~~~l~~~L~EI~RVLKPGG~fiI~---~f~~~--~edL~~~~~~l~~lGfkkl~W~~~~k~d----~~~~E  464 (480)
                           ..+ +..+-.-+.++.+.+||- +|++-   ++...  ...++.+...++.+||. +.|.+..-.+    +.+.-
T Consensus        88 g~~~g~~d~r~~L~~~~~r~i~~~~P~-~~~~ENV~gl~~~~~~~~~~~i~~~l~~~GY~-v~~~vl~a~~~GvPQ~R~R  165 (327)
T 2c7p_A           88 GKQKGFEDSRGTLFFDIARIVREKKPK-VVFMENVKNFASHDNGNTLEVVKNTMNELDYS-FHAKVLNALDYGIPQKRER  165 (327)
T ss_dssp             SCCCGGGSTTSCHHHHHHHHHHHHCCS-EEEEEEEGGGGTGGGGHHHHHHHHHHHHTTBC-CEEEEEEGGGGTCSBCCEE
T ss_pred             cccCCCcchhhHHHHHHHHHHHhccCc-EEEEeCcHHHHhccccHHHHHHHHHHHhCCCE-EEEEEEEHHHcCCCccceE
Confidence                 112 111222233344446886 33443   23322  23456788889999996 5566543322    13445


Q ss_pred             eeEEEE
Q 046488          465 VFFSAV  470 (480)
Q Consensus       465 ~~lsav  470 (480)
                      +|+.++
T Consensus       166 ~~iv~~  171 (327)
T 2c7p_A          166 IYMICF  171 (327)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            555554

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=87.02  E-value=1  Score=45.15  Aligned_cols=91  Identities=16%  Similarity=0.171  Sum_probs=54.9

Q ss_pred             CCCCCCCCeEEEECCCC-cHHHHHHhh-CCCEEEEEecCCChhHHHHHHHhCCCCeeeec-----ccCCCCCCCccchhe
Q 046488          320 DIKPGEIRIGLDFSIGT-GTFAARMRE-FNVTLVSAIINLGAPFNEMIALRGLVPLYITI-----NQRVPFFDNTLDLIH  392 (480)
Q Consensus       320 ~l~~g~iR~VLDVGCGt-G~fAa~Lae-~gV~Vv~vd~d~~~~~~~~iA~rglip~~~~~-----ae~LPFpd~SFDlV~  392 (480)
                      ++++|+  +||-+|+|. |.++..+++ .|..++.++.+.  ...+.+..-| ....+..     .+.+.   +.+|+|+
T Consensus       191 ~~~~g~--~VlV~GaG~vG~~aiqlak~~Ga~Vi~~~~~~--~~~~~a~~lG-a~~vi~~~~~~~~~~~~---~g~Dvvi  262 (369)
T 1uuf_A          191 QAGPGK--KVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSE--AKREAAKALG-ADEVVNSRNADEMAAHL---KSFDFIL  262 (369)
T ss_dssp             TCCTTC--EEEEECCSHHHHHHHHHHHHTTCEEEEEESSG--GGHHHHHHHT-CSEEEETTCHHHHHTTT---TCEEEEE
T ss_pred             CCCCCC--EEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH--HHHHHHHHcC-CcEEeccccHHHHHHhh---cCCCEEE
Confidence            566665  799999874 777777776 488887777542  2222222223 2222221     22222   4688887


Q ss_pred             ecccccCccChhcHHHHHHHHHhcccCCcEEEEee
Q 046488          393 TTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDS  427 (480)
Q Consensus       393 ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~  427 (480)
                      -.-.     ..    ..+.+..+.|||||.+++..
T Consensus       263 d~~g-----~~----~~~~~~~~~l~~~G~iv~~G  288 (369)
T 1uuf_A          263 NTVA-----AP----HNLDDFTTLLKRDGTMTLVG  288 (369)
T ss_dssp             ECCS-----SC----CCHHHHHTTEEEEEEEEECC
T ss_pred             ECCC-----CH----HHHHHHHHHhccCCEEEEec
Confidence            4322     11    14778889999999988754

>2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A*

Probab=86.50  E-value=1.9  Score=42.12  Aligned_cols=95  Identities=12%  Similarity=0.023  Sum_probs=55.2

Q ss_pred             hcCCCCCCCCeEEEECC--CCcHHHHHHhh-CCCEEEEEecCCChhHHHHHHH-hCCCCeeeecccCCCC-------CCC
Q 046488          318 VLDIKPGEIRIGLDFSI--GTGTFAARMRE-FNVTLVSAIINLGAPFNEMIAL-RGLVPLYITINQRVPF-------FDN  386 (480)
Q Consensus       318 vL~l~~g~iR~VLDVGC--GtG~fAa~Lae-~gV~Vv~vd~d~~~~~~~~iA~-rglip~~~~~ae~LPF-------pd~  386 (480)
                      ..++++++  +||-+|+  |.|..+..++. .|..++.++.+   +.....++ +-+.....+....-.+       ..+
T Consensus       150 ~~~~~~g~--~vlI~Ga~g~iG~~~~~~a~~~G~~V~~~~~~---~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~~~  224 (345)
T 2j3h_A          150 VCSPKEGE--TVYVSAASGAVGQLVGQLAKMMGCYVVGSAGS---KEKVDLLKTKFGFDDAFNYKEESDLTAALKRCFPN  224 (345)
T ss_dssp             TSCCCTTC--EEEESSTTSHHHHHHHHHHHHTTCEEEEEESS---HHHHHHHHHTSCCSEEEETTSCSCSHHHHHHHCTT
T ss_pred             HhCCCCCC--EEEEECCCcHHHHHHHHHHHHCCCEEEEEeCC---HHHHHHHHHHcCCceEEecCCHHHHHHHHHHHhCC
Confidence            34455664  8999997  56777776665 58888877654   22223333 3223322221110000       124


Q ss_pred             ccchheecccccCccChhcHHHHHHHHHhcccCCcEEEEee
Q 046488          387 TLDLIHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDS  427 (480)
Q Consensus       387 SFDlV~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~  427 (480)
                      .+|+|+.+..          ...+.+..+.|+|||++++..
T Consensus       225 ~~d~vi~~~g----------~~~~~~~~~~l~~~G~~v~~G  255 (345)
T 2j3h_A          225 GIDIYFENVG----------GKMLDAVLVNMNMHGRIAVCG  255 (345)
T ss_dssp             CEEEEEESSC----------HHHHHHHHTTEEEEEEEEECC
T ss_pred             CCcEEEECCC----------HHHHHHHHHHHhcCCEEEEEc
Confidence            5887774322          126888999999999988754

>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A*

Probab=86.45  E-value=1.8  Score=42.13  Aligned_cols=94  Identities=11%  Similarity=-0.041  Sum_probs=53.8

Q ss_pred             cCCCCCCCCeEEEECC--CCcHHHHHHhh-CCCEEEEEecCCChhHHHHHHHhCCCCeeeeccc--CC-----CCCCCcc
Q 046488          319 LDIKPGEIRIGLDFSI--GTGTFAARMRE-FNVTLVSAIINLGAPFNEMIALRGLVPLYITINQ--RV-----PFFDNTL  388 (480)
Q Consensus       319 L~l~~g~iR~VLDVGC--GtG~fAa~Lae-~gV~Vv~vd~d~~~~~~~~iA~rglip~~~~~ae--~L-----PFpd~SF  388 (480)
                      .+++++  ++||-+|+  |.|..++.++. .|..++.++.+.  ...+.. ++-+.....+...  .+     -...+.+
T Consensus       141 ~~~~~g--~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~--~~~~~~-~~~g~~~~~d~~~~~~~~~~~~~~~~~~~  215 (333)
T 1v3u_A          141 CGVKGG--ETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSD--EKIAYL-KQIGFDAAFNYKTVNSLEEALKKASPDGY  215 (333)
T ss_dssp             SCCCSS--CEEEEESTTBHHHHHHHHHHHHTTCEEEEEESSH--HHHHHH-HHTTCSEEEETTSCSCHHHHHHHHCTTCE
T ss_pred             hCCCCC--CEEEEecCCCcHHHHHHHHHHHCCCEEEEEeCCH--HHHHHH-HhcCCcEEEecCCHHHHHHHHHHHhCCCC
Confidence            345555  48999998  56666665554 588888776542  222222 3322222222111  00     0011468


Q ss_pred             chheecccccCccChhcHHHHHHHHHhcccCCcEEEEee
Q 046488          389 DLIHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDS  427 (480)
Q Consensus       389 DlV~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~  427 (480)
                      |+|+.+..          ...+.+..+.|||||++++..
T Consensus       216 d~vi~~~g----------~~~~~~~~~~l~~~G~~v~~g  244 (333)
T 1v3u_A          216 DCYFDNVG----------GEFLNTVLSQMKDFGKIAICG  244 (333)
T ss_dssp             EEEEESSC----------HHHHHHHHTTEEEEEEEEECC
T ss_pred             eEEEECCC----------hHHHHHHHHHHhcCCEEEEEe
Confidence            88775332          125788899999999988764

>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1

Probab=86.18  E-value=2.5  Score=42.03  Aligned_cols=95  Identities=13%  Similarity=0.053  Sum_probs=54.4

Q ss_pred             cCCCCCCCCeEEEECCCC-cHHHHHHhh-CCC-EEEEEecCCChhHHHHHHHhCCCCeeeeccc---CC-----CCCCCc
Q 046488          319 LDIKPGEIRIGLDFSIGT-GTFAARMRE-FNV-TLVSAIINLGAPFNEMIALRGLVPLYITINQ---RV-----PFFDNT  387 (480)
Q Consensus       319 L~l~~g~iR~VLDVGCGt-G~fAa~Lae-~gV-~Vv~vd~d~~~~~~~~iA~rglip~~~~~ae---~L-----PFpd~S  387 (480)
                      .++.+|+  +||-+|+|. |.++..+++ .|. .++.++.+.  .. ...+++-+....+...+   .+     ....+.
T Consensus       188 ~~~~~g~--~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~--~~-~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~~g  262 (374)
T 1cdo_A          188 AKVEPGS--TCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNP--DK-FEKAKVFGATDFVNPNDHSEPISQVLSKMTNGG  262 (374)
T ss_dssp             TCCCTTC--EEEEECCSHHHHHHHHHHHHTTCSEEEEECSCG--GG-HHHHHHTTCCEEECGGGCSSCHHHHHHHHHTSC
T ss_pred             cCCCCCC--EEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCH--HH-HHHHHHhCCceEEeccccchhHHHHHHHHhCCC
Confidence            3455664  799999864 667777776 487 677776442  22 23333333332222111   00     001135


Q ss_pred             cchheecccccCccChhcHHHHHHHHHhcccCC-cEEEEee
Q 046488          388 LDLIHTTRFLDGWIDFVLLDFILYDWDRVLRPG-GLLWIDS  427 (480)
Q Consensus       388 FDlV~ss~vL~h~~d~~~l~~~L~EI~RVLKPG-G~fiI~~  427 (480)
                      +|+|+-.-.     .    ...+.+..+.|||| |++++..
T Consensus       263 ~D~vid~~g-----~----~~~~~~~~~~l~~~~G~iv~~G  294 (374)
T 1cdo_A          263 VDFSLECVG-----N----VGVMRNALESCLKGWGVSVLVG  294 (374)
T ss_dssp             BSEEEECSC-----C----HHHHHHHHHTBCTTTCEEEECS
T ss_pred             CCEEEECCC-----C----HHHHHHHHHHhhcCCcEEEEEc
Confidence            787774221     1    23688999999999 9988764

>4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A*

Probab=85.91  E-value=1.8  Score=42.25  Aligned_cols=95  Identities=13%  Similarity=-0.040  Sum_probs=57.0

Q ss_pred             HhcCCCCCCCCeEEEECC--CCcHHHHHHhh-CCCEEEEEecCCChhHHHHHHHhCCCCeeeec--------ccCCCCCC
Q 046488          317 EVLDIKPGEIRIGLDFSI--GTGTFAARMRE-FNVTLVSAIINLGAPFNEMIALRGLVPLYITI--------NQRVPFFD  385 (480)
Q Consensus       317 ~vL~l~~g~iR~VLDVGC--GtG~fAa~Lae-~gV~Vv~vd~d~~~~~~~~iA~rglip~~~~~--------ae~LPFpd  385 (480)
                      +...+++++  +||-+|+  |.|..+..++. .|..++.++.+.  ...+.++++-+....+..        ..++.  .
T Consensus       143 ~~~~~~~g~--~vlI~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~--~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--~  216 (336)
T 4b7c_A          143 DVGQPKNGE--TVVISGAAGAVGSVAGQIARLKGCRVVGIAGGA--EKCRFLVEELGFDGAIDYKNEDLAAGLKREC--P  216 (336)
T ss_dssp             HTTCCCTTC--EEEESSTTSHHHHHHHHHHHHTTCEEEEEESSH--HHHHHHHHTTCCSEEEETTTSCHHHHHHHHC--T
T ss_pred             HhcCCCCCC--EEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCH--HHHHHHHHHcCCCEEEECCCHHHHHHHHHhc--C
Confidence            344566664  8999998  56777776665 588888877541  222223233333332221        11111  3


Q ss_pred             CccchheecccccCccChhcHHHHHHHHHhcccCCcEEEEee
Q 046488          386 NTLDLIHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDS  427 (480)
Q Consensus       386 ~SFDlV~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~  427 (480)
                      +.+|+|+.+-.          ...+.+..+.|+|||++++..
T Consensus       217 ~~~d~vi~~~g----------~~~~~~~~~~l~~~G~iv~~G  248 (336)
T 4b7c_A          217 KGIDVFFDNVG----------GEILDTVLTRIAFKARIVLCG  248 (336)
T ss_dssp             TCEEEEEESSC----------HHHHHHHHTTEEEEEEEEECC
T ss_pred             CCceEEEECCC----------cchHHHHHHHHhhCCEEEEEe
Confidence            46888874322          126889999999999998764

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=85.78  E-value=2.7  Score=42.59  Aligned_cols=110  Identities=13%  Similarity=0.092  Sum_probs=62.9

Q ss_pred             hhhhhHHHhc-CCCCCCCCeEEEECCCCcHHHHHHhhCCCEEEEEecCCChhHH-HHHHHhCCCCeeeecccCCCCCCCc
Q 046488          310 TADFLIPEVL-DIKPGEIRIGLDFSIGTGTFAARMREFNVTLVSAIINLGAPFN-EMIALRGLVPLYITINQRVPFFDNT  387 (480)
Q Consensus       310 ~ad~~I~~vL-~l~~g~iR~VLDVGCGtG~fAa~Lae~gV~Vv~vd~d~~~~~~-~~iA~rglip~~~~~ae~LPFpd~S  387 (480)
                      .+|.|+-+-+ ++..+  .+||.+|-+.|.++..|+..+++.++ +--.++.+. ...+..+.-+..+.....+.-....
T Consensus        24 a~d~~ll~~~~~~~~~--~~~~~~~d~~gal~~~~~~~~~~~~~-ds~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~  100 (375)
T 4dcm_A           24 AADEYLLQQLDDTEIR--GPVLILNDAFGALSCALAEHKPYSIG-DSYISELATRENLRLNGIDESSVKFLDSTADYPQQ  100 (375)
T ss_dssp             HHHHHHHHTTTTCCCC--SCEEEECCSSSHHHHHTGGGCCEEEE-SCHHHHHHHHHHHHHTTCCGGGSEEEETTSCCCSS
T ss_pred             hHHHHHHHhhhhccCC--CCEEEECCCCCHHHHhhccCCceEEE-hHHHHHHHHHHHHHHcCCCccceEecccccccccC
Confidence            4566654332 23222  36999999999999999877776542 100111111 1233333322111122223334567


Q ss_pred             cchheecccccCcc-ChhcHHHHHHHHHhcccCCcEEEEee
Q 046488          388 LDLIHTTRFLDGWI-DFVLLDFILYDWDRVLRPGGLLWIDS  427 (480)
Q Consensus       388 FDlV~ss~vL~h~~-d~~~l~~~L~EI~RVLKPGG~fiI~~  427 (480)
                      ||+|+.     .++ ....+...|.++...|+||+.+++.+
T Consensus       101 ~~~v~~-----~lpk~~~~l~~~L~~l~~~l~~~~~i~~~g  136 (375)
T 4dcm_A          101 PGVVLI-----KVPKTLALLEQQLRALRKVVTSDTRIIAGA  136 (375)
T ss_dssp             CSEEEE-----ECCSCHHHHHHHHHHHHTTCCTTSEEEEEE
T ss_pred             CCEEEE-----EcCCCHHHHHHHHHHHHhhCCCCCEEEEEe
Confidence            898874     233 33345678899999999999987764

>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*

Probab=85.58  E-value=2.8  Score=41.64  Aligned_cols=95  Identities=11%  Similarity=-0.021  Sum_probs=55.2

Q ss_pred             cCCCCCCCCeEEEECCCC-cHHHHHHhhC-CC-EEEEEecCCChhHHHHHHHhCCCCeeeeccc---CC-----CCCCCc
Q 046488          319 LDIKPGEIRIGLDFSIGT-GTFAARMREF-NV-TLVSAIINLGAPFNEMIALRGLVPLYITINQ---RV-----PFFDNT  387 (480)
Q Consensus       319 L~l~~g~iR~VLDVGCGt-G~fAa~Lae~-gV-~Vv~vd~d~~~~~~~~iA~rglip~~~~~ae---~L-----PFpd~S  387 (480)
                      .++++|+  +||-+|+|. |.++..+++. |. .++.++.+.  .. ...+++-+....+...+   .+     ...++.
T Consensus       187 ~~~~~g~--~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~--~~-~~~a~~lGa~~vi~~~~~~~~~~~~i~~~t~gg  261 (373)
T 1p0f_A          187 AKVTPGS--TCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHK--DK-FPKAIELGATECLNPKDYDKPIYEVICEKTNGG  261 (373)
T ss_dssp             TCCCTTC--EEEEECCSHHHHHHHHHHHHHTCSEEEEECSCG--GG-HHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSC
T ss_pred             cCCCCCC--EEEEECCCHHHHHHHHHHHHcCCCeEEEECCCH--HH-HHHHHHcCCcEEEecccccchHHHHHHHHhCCC
Confidence            3456665  799999874 6777777764 87 677776442  22 23333433332222110   00     011236


Q ss_pred             cchheecccccCccChhcHHHHHHHHHhcccCC-cEEEEee
Q 046488          388 LDLIHTTRFLDGWIDFVLLDFILYDWDRVLRPG-GLLWIDS  427 (480)
Q Consensus       388 FDlV~ss~vL~h~~d~~~l~~~L~EI~RVLKPG-G~fiI~~  427 (480)
                      ||+|+-.-.     .    ...+.+..+.|+|| |++++..
T Consensus       262 ~Dvvid~~g-----~----~~~~~~~~~~l~~~~G~iv~~G  293 (373)
T 1p0f_A          262 VDYAVECAG-----R----IETMMNALQSTYCGSGVTVVLG  293 (373)
T ss_dssp             BSEEEECSC-----C----HHHHHHHHHTBCTTTCEEEECC
T ss_pred             CCEEEECCC-----C----HHHHHHHHHHHhcCCCEEEEEc
Confidence            888874221     1    23688999999999 9988754

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A

Probab=85.13  E-value=1.6  Score=43.00  Aligned_cols=97  Identities=16%  Similarity=0.115  Sum_probs=57.2

Q ss_pred             HhcCCCCCCCCeEEEECCCC-cHHHHHHhhC-CC-EEEEEecCCChhHHHHHHHhCCCCeeeec-cc----CC--CCCCC
Q 046488          317 EVLDIKPGEIRIGLDFSIGT-GTFAARMREF-NV-TLVSAIINLGAPFNEMIALRGLVPLYITI-NQ----RV--PFFDN  386 (480)
Q Consensus       317 ~vL~l~~g~iR~VLDVGCGt-G~fAa~Lae~-gV-~Vv~vd~d~~~~~~~~iA~rglip~~~~~-ae----~L--PFpd~  386 (480)
                      +...+++|+  +||=+|+|. |.++..+++. |. .++.++.+   +.....+++-+....+.. .+    .+  -...+
T Consensus       160 ~~~~~~~g~--~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~---~~~~~~~~~lGa~~vi~~~~~~~~~~v~~~t~g~  234 (352)
T 3fpc_A          160 ELANIKLGD--TVCVIGIGPVGLMSVAGANHLGAGRIFAVGSR---KHCCDIALEYGATDIINYKNGDIVEQILKATDGK  234 (352)
T ss_dssp             HHTTCCTTC--CEEEECCSHHHHHHHHHHHTTTCSSEEEECCC---HHHHHHHHHHTCCEEECGGGSCHHHHHHHHTTTC
T ss_pred             HhcCCCCCC--EEEEECCCHHHHHHHHHHHHcCCcEEEEECCC---HHHHHHHHHhCCceEEcCCCcCHHHHHHHHcCCC
Confidence            345566665  788889875 7777777775 77 67777643   232334443233322221 11    00  01234


Q ss_pred             ccchheecccccCccChhcHHHHHHHHHhcccCCcEEEEee
Q 046488          387 TLDLIHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDS  427 (480)
Q Consensus       387 SFDlV~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~  427 (480)
                      .||+|+-...     ..    ..+.+..+.|+|||++++..
T Consensus       235 g~D~v~d~~g-----~~----~~~~~~~~~l~~~G~~v~~G  266 (352)
T 3fpc_A          235 GVDKVVIAGG-----DV----HTFAQAVKMIKPGSDIGNVN  266 (352)
T ss_dssp             CEEEEEECSS-----CT----THHHHHHHHEEEEEEEEECC
T ss_pred             CCCEEEECCC-----Ch----HHHHHHHHHHhcCCEEEEec
Confidence            6888874321     22    26899999999999988753

>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*

Probab=85.00  E-value=3.1  Score=41.38  Aligned_cols=95  Identities=15%  Similarity=-0.017  Sum_probs=54.5

Q ss_pred             cCCCCCCCCeEEEECCCC-cHHHHHHhh-CCC-EEEEEecCCChhHHHHHHHhCCCCeeeeccc---CC-----CCCCCc
Q 046488          319 LDIKPGEIRIGLDFSIGT-GTFAARMRE-FNV-TLVSAIINLGAPFNEMIALRGLVPLYITINQ---RV-----PFFDNT  387 (480)
Q Consensus       319 L~l~~g~iR~VLDVGCGt-G~fAa~Lae-~gV-~Vv~vd~d~~~~~~~~iA~rglip~~~~~ae---~L-----PFpd~S  387 (480)
                      .++++|+  +||-+|+|. |.++..+++ .|. .++.++.+.  .. ...+++-+....+...+   .+     -..++.
T Consensus       191 ~~~~~g~--~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~--~~-~~~a~~lGa~~vi~~~~~~~~~~~~v~~~~~~g  265 (376)
T 1e3i_A          191 AKVTPGS--TCAVFGLGCVGLSAIIGCKIAGASRIIAIDING--EK-FPKAKALGATDCLNPRELDKPVQDVITELTAGG  265 (376)
T ss_dssp             SCCCTTC--EEEEECCSHHHHHHHHHHHHTTCSEEEEECSCG--GG-HHHHHHTTCSEEECGGGCSSCHHHHHHHHHTSC
T ss_pred             cCCCCCC--EEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCH--HH-HHHHHHhCCcEEEccccccchHHHHHHHHhCCC
Confidence            3455664  799999874 677777776 487 677776542  22 23333333332222111   00     001136


Q ss_pred             cchheecccccCccChhcHHHHHHHHHhcccCC-cEEEEee
Q 046488          388 LDLIHTTRFLDGWIDFVLLDFILYDWDRVLRPG-GLLWIDS  427 (480)
Q Consensus       388 FDlV~ss~vL~h~~d~~~l~~~L~EI~RVLKPG-G~fiI~~  427 (480)
                      +|+|+-.-.     .    ...+.+..+.|+|| |++++..
T Consensus       266 ~Dvvid~~G-----~----~~~~~~~~~~l~~~~G~iv~~G  297 (376)
T 1e3i_A          266 VDYSLDCAG-----T----AQTLKAAVDCTVLGWGSCTVVG  297 (376)
T ss_dssp             BSEEEESSC-----C----HHHHHHHHHTBCTTTCEEEECC
T ss_pred             ccEEEECCC-----C----HHHHHHHHHHhhcCCCEEEEEC
Confidence            787773221     1    23788999999999 9988753

>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...

Probab=84.91  E-value=3  Score=41.48  Aligned_cols=95  Identities=11%  Similarity=-0.021  Sum_probs=54.6

Q ss_pred             cCCCCCCCCeEEEECCCC-cHHHHHHhh-CCC-EEEEEecCCChhHHHHHHHhCCCCeeeeccc---CC-----CCCCCc
Q 046488          319 LDIKPGEIRIGLDFSIGT-GTFAARMRE-FNV-TLVSAIINLGAPFNEMIALRGLVPLYITINQ---RV-----PFFDNT  387 (480)
Q Consensus       319 L~l~~g~iR~VLDVGCGt-G~fAa~Lae-~gV-~Vv~vd~d~~~~~~~~iA~rglip~~~~~ae---~L-----PFpd~S  387 (480)
                      .++++++  +||-+|+|. |.++..+++ .|. .++.++.+.  ... ..+++-+....+...+   .+     ...++.
T Consensus       187 ~~~~~g~--~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~--~~~-~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~~g  261 (374)
T 2jhf_A          187 AKVTQGS--TCAVFGLGGVGLSVIMGCKAAGAARIIGVDINK--DKF-AKAKEVGATECVNPQDYKKPIQEVLTEMSNGG  261 (374)
T ss_dssp             TCCCTTC--EEEEECCSHHHHHHHHHHHHTTCSEEEEECSCG--GGH-HHHHHTTCSEEECGGGCSSCHHHHHHHHTTSC
T ss_pred             cCCCCCC--EEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCH--HHH-HHHHHhCCceEecccccchhHHHHHHHHhCCC
Confidence            3456664  799999865 667777776 487 677776442  222 2333333332222111   00     011236


Q ss_pred             cchheecccccCccChhcHHHHHHHHHhcccCC-cEEEEee
Q 046488          388 LDLIHTTRFLDGWIDFVLLDFILYDWDRVLRPG-GLLWIDS  427 (480)
Q Consensus       388 FDlV~ss~vL~h~~d~~~l~~~L~EI~RVLKPG-G~fiI~~  427 (480)
                      +|+|+-.-.     .    ...+.+..+.|||| |++++..
T Consensus       262 ~D~vid~~g-----~----~~~~~~~~~~l~~~~G~iv~~G  293 (374)
T 2jhf_A          262 VDFSFEVIG-----R----LDTMVTALSCCQEAYGVSVIVG  293 (374)
T ss_dssp             BSEEEECSC-----C----HHHHHHHHHHBCTTTCEEEECS
T ss_pred             CcEEEECCC-----C----HHHHHHHHHHhhcCCcEEEEec
Confidence            888774221     1    23688999999999 9988754

>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*

Probab=84.66  E-value=1.9  Score=46.78  Aligned_cols=62  Identities=16%  Similarity=0.144  Sum_probs=37.6

Q ss_pred             CCccchheecccccCccChhc-HHHHHHHHHhcccCCcEEEEeeccCChhhHHHHHHHHHHcCceeeEEE
Q 046488          385 DNTLDLIHTTRFLDGWIDFVL-LDFILYDWDRVLRPGGLLWIDSFFCAKEDMNDYLEVFKMLKYKKHKWV  453 (480)
Q Consensus       385 d~SFDlV~ss~vL~h~~d~~~-l~~~L~EI~RVLKPGG~fiI~~f~~~~edL~~~~~~l~~lGfkkl~W~  453 (480)
                      +..||+++... +..-.+++. -..+|.++.|++||||.+.-  +.+.    ......+...||...++.
T Consensus       169 ~~~~da~flD~-f~p~~np~~w~~~~~~~l~~~~~~g~~~~t--~~~~----~~vr~~l~~aGf~~~~~~  231 (689)
T 3pvc_A          169 NNQVDAWFLDG-FAPAKNPDMWNEQLFNAMARMTRPGGTFST--FTAA----GFVRRGLQQAGFNVTKVK  231 (689)
T ss_dssp             TTCEEEEEECS-SCC--CCTTCSHHHHHHHHHHEEEEEEEEE--SCCC----HHHHHHHHHTTCEEEEEE
T ss_pred             CCceeEEEECC-CCCCCChhhhhHHHHHHHHHHhCCCCEEEe--ccCc----HHHHHHHHhCCeEEEecc
Confidence            57899998633 222111110 13589999999999998654  2222    234556778899755443

>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis}

Probab=84.46  E-value=0.84  Score=44.27  Aligned_cols=90  Identities=10%  Similarity=-0.054  Sum_probs=52.3

Q ss_pred             hcCCCCCCCCeEEEECCC-CcHHHHHHhhC-CCEEEEEecCCChhHHHHHHHhCCCCeeeecccCCCCCCCccchheecc
Q 046488          318 VLDIKPGEIRIGLDFSIG-TGTFAARMREF-NVTLVSAIINLGAPFNEMIALRGLVPLYITINQRVPFFDNTLDLIHTTR  395 (480)
Q Consensus       318 vL~l~~g~iR~VLDVGCG-tG~fAa~Lae~-gV~Vv~vd~d~~~~~~~~iA~rglip~~~~~ae~LPFpd~SFDlV~ss~  395 (480)
                      ..++++|+  +||=+|+| .|.++..+++. |+.++.++ +..  ..+ .+++-+....+.+.+++   .+.+|+|+-.-
T Consensus       137 ~~~~~~g~--~VlV~GaG~vG~~a~qlak~~Ga~Vi~~~-~~~--~~~-~~~~lGa~~v~~d~~~v---~~g~Dvv~d~~  207 (315)
T 3goh_A          137 KIPLTKQR--EVLIVGFGAVNNLLTQMLNNAGYVVDLVS-ASL--SQA-LAAKRGVRHLYREPSQV---TQKYFAIFDAV  207 (315)
T ss_dssp             TSCCCSCC--EEEEECCSHHHHHHHHHHHHHTCEEEEEC-SSC--CHH-HHHHHTEEEEESSGGGC---CSCEEEEECC-
T ss_pred             hcCCCCCC--EEEEECCCHHHHHHHHHHHHcCCEEEEEE-Chh--hHH-HHHHcCCCEEEcCHHHh---CCCccEEEECC
Confidence            34455664  89999986 37777777764 88888887 532  222 22332222222113344   56788887422


Q ss_pred             cccCccChhcHHHHHHHHHhcccCCcEEEEe
Q 046488          396 FLDGWIDFVLLDFILYDWDRVLRPGGLLWID  426 (480)
Q Consensus       396 vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~  426 (480)
                      .     ..     .+.+..+.|+|||+++..
T Consensus       208 g-----~~-----~~~~~~~~l~~~G~~v~~  228 (315)
T 3goh_A          208 N-----SQ-----NAAALVPSLKANGHIICI  228 (315)
T ss_dssp             ----------------TTGGGEEEEEEEEEE
T ss_pred             C-----ch-----hHHHHHHHhcCCCEEEEE
Confidence            1     11     246778999999998875

>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae}

Probab=84.32  E-value=1.5  Score=43.15  Aligned_cols=94  Identities=11%  Similarity=0.065  Sum_probs=54.5

Q ss_pred             CCCCCCCCeEEEECC--CCcHHHHHHhh-CCCEEEEEecCCChhHHHHHHHhCCCCeeeecc--cCCC-----CCCCccc
Q 046488          320 DIKPGEIRIGLDFSI--GTGTFAARMRE-FNVTLVSAIINLGAPFNEMIALRGLVPLYITIN--QRVP-----FFDNTLD  389 (480)
Q Consensus       320 ~l~~g~iR~VLDVGC--GtG~fAa~Lae-~gV~Vv~vd~d~~~~~~~~iA~rglip~~~~~a--e~LP-----Fpd~SFD  389 (480)
                      ++++++  +||-+|+  |.|..++.++. .|..++.++.+..  .. ..+++-+.....+..  +.+.     ..++.+|
T Consensus       166 ~~~~g~--~vlV~Ga~ggiG~~~~~~a~~~Ga~V~~~~~~~~--~~-~~~~~~g~~~~~d~~~~~~~~~~~~~~~~~~~D  240 (347)
T 2hcy_A          166 NLMAGH--WVAISGAAGGLGSLAVQYAKAMGYRVLGIDGGEG--KE-ELFRSIGGEVFIDFTKEKDIVGAVLKATDGGAH  240 (347)
T ss_dssp             TCCTTC--EEEEETTTSHHHHHHHHHHHHTTCEEEEEECSTT--HH-HHHHHTTCCEEEETTTCSCHHHHHHHHHTSCEE
T ss_pred             CCCCCC--EEEEECCCchHHHHHHHHHHHCCCcEEEEcCCHH--HH-HHHHHcCCceEEecCccHhHHHHHHHHhCCCCC
Confidence            455554  8999998  56777666655 5888888775532  22 233332222222211  1100     0012578


Q ss_pred             hheecccccCccChhcHHHHHHHHHhcccCCcEEEEee
Q 046488          390 LIHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDS  427 (480)
Q Consensus       390 lV~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~  427 (480)
                      +|+.+..     .    ...+.+..+.|+|||++++..
T Consensus       241 ~vi~~~g-----~----~~~~~~~~~~l~~~G~iv~~g  269 (347)
T 2hcy_A          241 GVINVSV-----S----EAAIEASTRYVRANGTTVLVG  269 (347)
T ss_dssp             EEEECSS-----C----HHHHHHHTTSEEEEEEEEECC
T ss_pred             EEEECCC-----c----HHHHHHHHHHHhcCCEEEEEe
Confidence            7775332     1    237899999999999988754

>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11

Probab=84.31  E-value=1.5  Score=43.54  Aligned_cols=72  Identities=13%  Similarity=0.140  Sum_probs=42.9

Q ss_pred             CCCCccchheec--cccc---CccC------hhcHHHHHHHHHhcccCCcEEEEeecc---CC-----hhhHHHHHHHHH
Q 046488          383 FFDNTLDLIHTT--RFLD---GWID------FVLLDFILYDWDRVLRPGGLLWIDSFF---CA-----KEDMNDYLEVFK  443 (480)
Q Consensus       383 Fpd~SFDlV~ss--~vL~---h~~d------~~~l~~~L~EI~RVLKPGG~fiI~~f~---~~-----~edL~~~~~~l~  443 (480)
                      +++++||+|++.  +...   .+.+      ...+...+.++.|+|||||.+++..-.   ..     ...+..+.++++
T Consensus        29 l~~~svDlI~tDPPY~~~~~~~y~~~~~~~~~~~l~~~l~~~~rvLk~~G~i~i~~~d~~~~g~~~~~~~~~~~i~~~~~  108 (323)
T 1boo_A           29 FPEESISLVMTSPPFALQRKKEYGNLEQHEYVDWFLSFAKVVNKKLKPDGSFVVDFGGAYMKGVPARSIYNFRVLIRMID  108 (323)
T ss_dssp             SCSSCEEEEEECCCCSSSCSCSSCSCHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCCEETTEEEECCHHHHHHHHHHH
T ss_pred             CCCCCeeEEEECCCCCCCcccccCCcCHHHHHHHHHHHHHHHHHHCcCCcEEEEEECCEecCCCcccccchHHHHHHHHH
Confidence            447788888875  1111   1110      012467899999999999999885211   11     112445556778


Q ss_pred             HcCceee---EEEE
Q 046488          444 MLKYKKH---KWVV  454 (480)
Q Consensus       444 ~lGfkkl---~W~~  454 (480)
                      ..||.-.   -|..
T Consensus       109 ~~Gf~~~~~iiW~k  122 (323)
T 1boo_A          109 EVGFFLAEDFYWFN  122 (323)
T ss_dssp             TTCCEEEEEEEEEC
T ss_pred             hCCCEEEEEEEEec
Confidence            8898643   4754

>2hwk_A Helicase NSP2; rossman fold, alpha/beta/alpha, multi-domain, hydrolase; 2.45A {Venezuelan equine encephalitis virus}

Probab=84.30  E-value=2  Score=43.21  Aligned_cols=86  Identities=15%  Similarity=0.150  Sum_probs=53.8

Q ss_pred             Cccchheecccc----cCcc---Ch-hcHHHHHHHHHhcccCCcEEEEeeccCChhhHHHHHHHHHHcCceeeEEEEeec
Q 046488          386 NTLDLIHTTRFL----DGWI---DF-VLLDFILYDWDRVLRPGGLLWIDSFFCAKEDMNDYLEVFKMLKYKKHKWVVVPK  457 (480)
Q Consensus       386 ~SFDlV~ss~vL----~h~~---d~-~~l~~~L~EI~RVLKPGG~fiI~~f~~~~edL~~~~~~l~~lGfkkl~W~~~~k  457 (480)
                      +.+|+|++..+-    +|+.   |. ..+..++.-..++|+|||.|++-.|.-.+..-+.++..+++ -|+..+-..-.-
T Consensus       205 ~k~DvV~SDMApn~sGh~yqQC~DHarii~Lal~fA~~vLkPGGtfV~KvyggaDr~se~lv~~LaR-~F~~Vr~vKP~A  283 (320)
T 2hwk_A          205 PKYDIIFVNVRTPYKYHHYQQCEDHAIKLSMLTKKACLHLNPGGTCVSIGYGYADRASESIIGAIAR-QFKFSRVCKPKS  283 (320)
T ss_dssp             CCEEEEEEECCCCCCSCHHHHHHHHHHHHHHTHHHHGGGEEEEEEEEEEECCCCSHHHHHHHHHHHT-TEEEEEEECCTT
T ss_pred             CcCCEEEEcCCCCCCCccccccchHHHHHHHHHHHHHHhcCCCceEEEEEecCCcccHHHHHHHHHH-hcceeeeeCCCC
Confidence            669999985432    2211   21 22345777888999999999998876553334556666666 377765433222


Q ss_pred             cCCCCcceeEEEEEEe
Q 046488          458 RDKDDREVFFSAVLEK  473 (480)
Q Consensus       458 ~d~~~~E~~lsav~qK  473 (480)
                      . ....|+|+.|.--|
T Consensus       284 S-R~StEvf~La~gf~  298 (320)
T 2hwk_A          284 S-LEETEVLFVFIGYD  298 (320)
T ss_dssp             C-CSTTCEEEEEEEEC
T ss_pred             c-cccceEEEEEEeec
Confidence            2 23689999876533

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis}

Probab=84.28  E-value=2.4  Score=41.63  Aligned_cols=95  Identities=17%  Similarity=0.125  Sum_probs=54.3

Q ss_pred             hcCCCCCCCCeEEEECCC--CcHHHHHHhh-CCCEEEEEecCCChhHHHHHHHhCCCCeeeecc-cCC------CCCCCc
Q 046488          318 VLDIKPGEIRIGLDFSIG--TGTFAARMRE-FNVTLVSAIINLGAPFNEMIALRGLVPLYITIN-QRV------PFFDNT  387 (480)
Q Consensus       318 vL~l~~g~iR~VLDVGCG--tG~fAa~Lae-~gV~Vv~vd~d~~~~~~~~iA~rglip~~~~~a-e~L------PFpd~S  387 (480)
                      ...+++|+  +||-+|+|  .|..+..+++ .|..++.++.+..  ..+.+..-| ....+... +.+      -...+.
T Consensus       139 ~~~~~~g~--~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~--~~~~~~~lg-a~~~~~~~~~~~~~~~~~~~~~~g  213 (340)
T 3gms_A          139 TLNLQRND--VLLVNACGSAIGHLFAQLSQILNFRLIAVTRNNK--HTEELLRLG-AAYVIDTSTAPLYETVMELTNGIG  213 (340)
T ss_dssp             TSCCCTTC--EEEESSTTSHHHHHHHHHHHHHTCEEEEEESSST--THHHHHHHT-CSEEEETTTSCHHHHHHHHTTTSC
T ss_pred             hcccCCCC--EEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHH--HHHHHHhCC-CcEEEeCCcccHHHHHHHHhCCCC
Confidence            34566664  89999987  5777777766 4888888876532  222222223 22222210 000      012346


Q ss_pred             cchheecccccCccChhcHHHHHHHHHhcccCCcEEEEee
Q 046488          388 LDLIHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDS  427 (480)
Q Consensus       388 FDlV~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~  427 (480)
                      +|+|+-.-.     .     ..+.+..+.|||||.+++..
T Consensus       214 ~Dvvid~~g-----~-----~~~~~~~~~l~~~G~iv~~G  243 (340)
T 3gms_A          214 ADAAIDSIG-----G-----PDGNELAFSLRPNGHFLTIG  243 (340)
T ss_dssp             EEEEEESSC-----H-----HHHHHHHHTEEEEEEEEECC
T ss_pred             CcEEEECCC-----C-----hhHHHHHHHhcCCCEEEEEe
Confidence            888874322     1     13445568999999998864

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}

Probab=84.04  E-value=1.5  Score=43.67  Aligned_cols=94  Identities=12%  Similarity=-0.051  Sum_probs=55.3

Q ss_pred             cCCCCCCCCeEEEECCCC-cHHHHHHhh-CCCEEEEEecCCChhHHHHHHHhCCCCeeeecc-cCC------CCCCCccc
Q 046488          319 LDIKPGEIRIGLDFSIGT-GTFAARMRE-FNVTLVSAIINLGAPFNEMIALRGLVPLYITIN-QRV------PFFDNTLD  389 (480)
Q Consensus       319 L~l~~g~iR~VLDVGCGt-G~fAa~Lae-~gV~Vv~vd~d~~~~~~~~iA~rglip~~~~~a-e~L------PFpd~SFD  389 (480)
                      ..+++|+  +||=+|+|. |.++..+++ .|+.++.++.+   +.....+++-+....+... +.+      -.....+|
T Consensus       185 ~~~~~g~--~VlV~G~G~vG~~a~qla~~~Ga~Vi~~~~~---~~~~~~~~~lGa~~vi~~~~~~~~~~v~~~~~g~g~D  259 (363)
T 3uog_A          185 GHLRAGD--RVVVQGTGGVALFGLQIAKATGAEVIVTSSS---REKLDRAFALGADHGINRLEEDWVERVYALTGDRGAD  259 (363)
T ss_dssp             TCCCTTC--EEEEESSBHHHHHHHHHHHHTTCEEEEEESC---HHHHHHHHHHTCSEEEETTTSCHHHHHHHHHTTCCEE
T ss_pred             cCCCCCC--EEEEECCCHHHHHHHHHHHHcCCEEEEEecC---chhHHHHHHcCCCEEEcCCcccHHHHHHHHhCCCCce
Confidence            4456665  899999775 667777766 48888887754   2222333332333332210 000      01234689


Q ss_pred             hheecccccCccChhcHHHHHHHHHhcccCCcEEEEee
Q 046488          390 LIHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDS  427 (480)
Q Consensus       390 lV~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~  427 (480)
                      +|+-...     ..     .+.+..+.|+|||.+++..
T Consensus       260 ~vid~~g-----~~-----~~~~~~~~l~~~G~iv~~G  287 (363)
T 3uog_A          260 HILEIAG-----GA-----GLGQSLKAVAPDGRISVIG  287 (363)
T ss_dssp             EEEEETT-----SS-----CHHHHHHHEEEEEEEEEEC
T ss_pred             EEEECCC-----hH-----HHHHHHHHhhcCCEEEEEe
Confidence            8875322     11     4778889999999998763

>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*

Probab=84.01  E-value=2.9  Score=41.43  Aligned_cols=95  Identities=14%  Similarity=0.075  Sum_probs=54.0

Q ss_pred             cCCCCCCCCeEEEECCCC-cHHHHHHhhC-CC-EEEEEecCCChhHHHHHHHhCCCCeeeeccc---CC-----CCCCCc
Q 046488          319 LDIKPGEIRIGLDFSIGT-GTFAARMREF-NV-TLVSAIINLGAPFNEMIALRGLVPLYITINQ---RV-----PFFDNT  387 (480)
Q Consensus       319 L~l~~g~iR~VLDVGCGt-G~fAa~Lae~-gV-~Vv~vd~d~~~~~~~~iA~rglip~~~~~ae---~L-----PFpd~S  387 (480)
                      .++++|+  +||-+|+|. |.++..+++. |. .++.++.+.  ...+ .+++-+....+...+   .+     ...++.
T Consensus       186 ~~~~~g~--~VlV~GaG~vG~~avqla~~~Ga~~Vi~~~~~~--~~~~-~~~~lGa~~vi~~~~~~~~~~~~v~~~~~~g  260 (373)
T 2fzw_A          186 AKLEPGS--VCAVFGLGGVGLAVIMGCKVAGASRIIGVDINK--DKFA-RAKEFGATECINPQDFSKPIQEVLIEMTDGG  260 (373)
T ss_dssp             TCCCTTC--EEEEECCSHHHHHHHHHHHHHTCSEEEEECSCG--GGHH-HHHHHTCSEEECGGGCSSCHHHHHHHHTTSC
T ss_pred             cCCCCCC--EEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCH--HHHH-HHHHcCCceEeccccccccHHHHHHHHhCCC
Confidence            3455664  799999864 6677777764 87 677776442  2222 233322222222110   00     011236


Q ss_pred             cchheecccccCccChhcHHHHHHHHHhcccCC-cEEEEee
Q 046488          388 LDLIHTTRFLDGWIDFVLLDFILYDWDRVLRPG-GLLWIDS  427 (480)
Q Consensus       388 FDlV~ss~vL~h~~d~~~l~~~L~EI~RVLKPG-G~fiI~~  427 (480)
                      +|+|+-...     .    ...+.+..+.|||| |++++..
T Consensus       261 ~D~vid~~g-----~----~~~~~~~~~~l~~~~G~iv~~G  292 (373)
T 2fzw_A          261 VDYSFECIG-----N----VKVMRAALEACHKGWGVSVVVG  292 (373)
T ss_dssp             BSEEEECSC-----C----HHHHHHHHHTBCTTTCEEEECS
T ss_pred             CCEEEECCC-----c----HHHHHHHHHhhccCCcEEEEEe
Confidence            888774321     1    23688999999999 9988754

>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}

Probab=83.23  E-value=3.5  Score=41.10  Aligned_cols=95  Identities=17%  Similarity=0.115  Sum_probs=56.7

Q ss_pred             cCCCCCCCCeEEEECCCC-cHHHHHHhhC-CC-EEEEEecCCChhHHHHHHHhCCCCeeeeccc-CCC-------CCCCc
Q 046488          319 LDIKPGEIRIGLDFSIGT-GTFAARMREF-NV-TLVSAIINLGAPFNEMIALRGLVPLYITINQ-RVP-------FFDNT  387 (480)
Q Consensus       319 L~l~~g~iR~VLDVGCGt-G~fAa~Lae~-gV-~Vv~vd~d~~~~~~~~iA~rglip~~~~~ae-~LP-------Fpd~S  387 (480)
                      ..+++|+  +||=+|+|. |.++..+++. |+ .++.++.+.   .....+++-+....+...+ .-.       ..++.
T Consensus       189 ~~~~~g~--~VlV~GaG~vG~~a~q~a~~~Ga~~Vi~~~~~~---~~~~~a~~lGa~~vi~~~~~~~~~~~~i~~~~~gg  263 (378)
T 3uko_A          189 AKVEPGS--NVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDS---KKYETAKKFGVNEFVNPKDHDKPIQEVIVDLTDGG  263 (378)
T ss_dssp             TCCCTTC--CEEEECCSHHHHHHHHHHHHHTCSCEEEECSCT---THHHHHHTTTCCEEECGGGCSSCHHHHHHHHTTSC
T ss_pred             cCCCCCC--EEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCH---HHHHHHHHcCCcEEEccccCchhHHHHHHHhcCCC
Confidence            3456664  788899873 7777777764 87 687776553   2333455433333322110 000       11236


Q ss_pred             cchheecccccCccChhcHHHHHHHHHhcccCC-cEEEEee
Q 046488          388 LDLIHTTRFLDGWIDFVLLDFILYDWDRVLRPG-GLLWIDS  427 (480)
Q Consensus       388 FDlV~ss~vL~h~~d~~~l~~~L~EI~RVLKPG-G~fiI~~  427 (480)
                      ||+|+-...     .    ...+.+..+.|||| |++++..
T Consensus       264 ~D~vid~~g-----~----~~~~~~~~~~l~~g~G~iv~~G  295 (378)
T 3uko_A          264 VDYSFECIG-----N----VSVMRAALECCHKGWGTSVIVG  295 (378)
T ss_dssp             BSEEEECSC-----C----HHHHHHHHHTBCTTTCEEEECS
T ss_pred             CCEEEECCC-----C----HHHHHHHHHHhhccCCEEEEEc
Confidence            888874321     2    23789999999997 9988764

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A

Probab=82.95  E-value=4.1  Score=39.96  Aligned_cols=92  Identities=17%  Similarity=0.107  Sum_probs=53.7

Q ss_pred             CCCCCCCCeEEEECCC-CcHHHHHHhh-CCCEEEEEecCCChhHHHHHHHhCCCCeeeecccCCCCC------CCccchh
Q 046488          320 DIKPGEIRIGLDFSIG-TGTFAARMRE-FNVTLVSAIINLGAPFNEMIALRGLVPLYITINQRVPFF------DNTLDLI  391 (480)
Q Consensus       320 ~l~~g~iR~VLDVGCG-tG~fAa~Lae-~gV~Vv~vd~d~~~~~~~~iA~rglip~~~~~ae~LPFp------d~SFDlV  391 (480)
                      ++++++  +||-+|+| .|..+..+++ .|..++.++.+   +.....+++-+.....+... -.+.      .+.+|+|
T Consensus       161 ~~~~g~--~VlV~GaG~vG~~~~~~a~~~Ga~Vi~~~~~---~~~~~~~~~lGa~~~~d~~~-~~~~~~~~~~~~~~d~v  234 (339)
T 1rjw_A          161 GAKPGE--WVAIYGIGGLGHVAVQYAKAMGLNVVAVDIG---DEKLELAKELGADLVVNPLK-EDAAKFMKEKVGGVHAA  234 (339)
T ss_dssp             TCCTTC--EEEEECCSTTHHHHHHHHHHTTCEEEEECSC---HHHHHHHHHTTCSEEECTTT-SCHHHHHHHHHSSEEEE
T ss_pred             CCCCCC--EEEEECCCHHHHHHHHHHHHcCCEEEEEeCC---HHHHHHHHHCCCCEEecCCC-ccHHHHHHHHhCCCCEE
Confidence            566664  89999986 4777776665 48888877644   22223333323332222110 0000      0357877


Q ss_pred             eecccccCccChhcHHHHHHHHHhcccCCcEEEEe
Q 046488          392 HTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWID  426 (480)
Q Consensus       392 ~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~  426 (480)
                      +-...     .    ...+.+..+.|+|||++++.
T Consensus       235 id~~g-----~----~~~~~~~~~~l~~~G~~v~~  260 (339)
T 1rjw_A          235 VVTAV-----S----KPAFQSAYNSIRRGGACVLV  260 (339)
T ss_dssp             EESSC-----C----HHHHHHHHHHEEEEEEEEEC
T ss_pred             EECCC-----C----HHHHHHHHHHhhcCCEEEEe
Confidence            64321     1    23688999999999998875

>3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica}

Probab=82.43  E-value=14  Score=36.81  Aligned_cols=123  Identities=11%  Similarity=0.088  Sum_probs=68.8

Q ss_pred             CeEEEECCCCcHHHHHHhhCCC--EEE--EEecCCChhHHHHHHHhCCCCeeeecccCCC---CCCCccchheecccccC
Q 046488          327 RIGLDFSIGTGTFAARMREFNV--TLV--SAIINLGAPFNEMIALRGLVPLYITINQRVP---FFDNTLDLIHTTRFLDG  399 (480)
Q Consensus       327 R~VLDVGCGtG~fAa~Lae~gV--~Vv--~vd~d~~~~~~~~iA~rglip~~~~~ae~LP---Fpd~SFDlV~ss~vL~h  399 (480)
                      -+++|+-||.|.+...+.+.|+  .++  +++.+  ..+.......-....+.++...+.   ++...+|+++.+.-=..
T Consensus        11 ~~vidLFaG~GG~~~G~~~aG~~~~~v~~a~e~d--~~a~~ty~~N~~~~~~~~DI~~~~~~~i~~~~~Dil~ggpPCQ~   88 (327)
T 3qv2_A           11 VNVIEFFSGIGGLRSSYERSSININATFIPFDIN--EIANKIYSKNFKEEVQVKNLDSISIKQIESLNCNTWFMSPPCQP   88 (327)
T ss_dssp             EEEEEETCTTTHHHHHHHHSSCCCCEEEEEECCC--HHHHHHHHHHHCCCCBCCCTTTCCHHHHHHTCCCEEEECCCCTT
T ss_pred             CEEEEECCChhHHHHHHHHcCCCceEEEEEEECC--HHHHHHHHHHCCCCcccCChhhcCHHHhccCCCCEEEecCCccC
Confidence            3799999999999999998885  444  55544  233333322211113334433332   12236899985421111


Q ss_pred             c-----------cChhcHHHHHHHHHh-cc-----cCCcEEEEee---ccCChhhHHHHHHHHHHcCceeeEEEEee
Q 046488          400 W-----------IDFVLLDFILYDWDR-VL-----RPGGLLWIDS---FFCAKEDMNDYLEVFKMLKYKKHKWVVVP  456 (480)
Q Consensus       400 ~-----------~d~~~l~~~L~EI~R-VL-----KPGG~fiI~~---f~~~~edL~~~~~~l~~lGfkkl~W~~~~  456 (480)
                      +           .+..  ..++.|+.| ++     ||- +|++-.   +.. ....+.+.+.++.+||. +.|.+..
T Consensus        89 fs~S~ag~~~~~~d~r--~~L~~~~~r~~i~~~~~~P~-~~~lENV~gl~~-~~~~~~i~~~l~~~GY~-v~~~vl~  160 (327)
T 3qv2_A           89 YNNSIMSKHKDINDPR--AKSVLHLYRDILPYLINKPK-HIFIENVPLFKE-SLVFKEIYNILIKNQYY-IKDIICS  160 (327)
T ss_dssp             CSHHHHTTTCTTTCGG--GHHHHHHHHTTGGGCSSCCS-EEEEEECGGGGG-SHHHHHHHHHHHHTTCE-EEEEEEC
T ss_pred             cccccCCCCCCCcccc--chhHHHHHHHHHHHhccCCC-EEEEEchhhhcC-hHHHHHHHHHHHhCCCE-EEEEEEe
Confidence            1           1221  457888888 65     453 334432   222 23456788889999997 5566543

>1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A

Probab=82.09  E-value=2.3  Score=42.36  Aligned_cols=50  Identities=18%  Similarity=0.163  Sum_probs=30.5

Q ss_pred             HHHHHHHHHhcccCCcEEEEee-ccCC----hhhHHHHHHHHHHcC-cee---eEEEEe
Q 046488          406 LDFILYDWDRVLRPGGLLWIDS-FFCA----KEDMNDYLEVFKMLK-YKK---HKWVVV  455 (480)
Q Consensus       406 l~~~L~EI~RVLKPGG~fiI~~-f~~~----~edL~~~~~~l~~lG-fkk---l~W~~~  455 (480)
                      +...|.|+.|+|+|||.+++.. +...    ...+..+...+...| |.-   +-|...
T Consensus        85 ~~~~l~~~~rvLk~~G~i~i~~~~~~~~~~~~~~l~~l~~~i~~~G~~~~~~~IIW~K~  143 (319)
T 1eg2_A           85 AKRWLAEAERVLSPTGSIAIFGGLQYQGEAGSGDLISIISHMRQNSKMLLANLIIWNYP  143 (319)
T ss_dssp             HHHHHHHHHHHEEEEEEEEEEECSCCCCCTTBCCHHHHHHHHHHHCCCEEEEEEEEECS
T ss_pred             HHHHHHHHHHHcCCCeEEEEEcCcccccccccccHHHHHHHHhCcccceeEEEEEEECC
Confidence            3568899999999999998863 2111    122344455555556 543   447643

>3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A*

Probab=81.39  E-value=39  Score=32.55  Aligned_cols=137  Identities=12%  Similarity=0.181  Sum_probs=74.8

Q ss_pred             eEEEECCCCcHHHHHHhhCCCEEE-EEecCCChhHHHHHHHhCCCCeeeecccCCCCC-CCccchheecc---ccc----
Q 046488          328 IGLDFSIGTGTFAARMREFNVTLV-SAIINLGAPFNEMIALRGLVPLYITINQRVPFF-DNTLDLIHTTR---FLD----  398 (480)
Q Consensus       328 ~VLDVGCGtG~fAa~Lae~gV~Vv-~vd~d~~~~~~~~iA~rglip~~~~~ae~LPFp-d~SFDlV~ss~---vL~----  398 (480)
                      +|||+=||.|.+...|.+.|+.++ +++.+.  .+.......-....+.++...+... -..+|+++...   .++    
T Consensus         2 kvidLFsG~GG~~~G~~~aG~~~v~a~e~d~--~a~~ty~~N~~~~~~~~DI~~i~~~~~~~~D~l~ggpPCQ~fS~ag~   79 (331)
T 3ubt_Y            2 NLISLFSGAGGLDLGFQKAGFRIICANEYDK--SIWKTYESNHSAKLIKGDISKISSDEFPKCDGIIGGPPSQSWSEGGS   79 (331)
T ss_dssp             EEEEESCTTCHHHHHHHHTTCEEEEEEECCT--TTHHHHHHHCCSEEEESCGGGCCGGGSCCCSEEECCCCGGGTEETTE
T ss_pred             eEEEeCcCccHHHHHHHHCCCEEEEEEeCCH--HHHHHHHHHCCCCcccCChhhCCHhhCCcccEEEecCCCCCcCCCCC
Confidence            699999999999999988898775 344442  3333333332223444443333211 12588888532   111    


Q ss_pred             --CccChhcHHHHHHHHHhc---ccCCcEEEEe---eccC--ChhhHHHHHHHHHHcCceeeEEEEeeccC----CCCcc
Q 046488          399 --GWIDFVLLDFILYDWDRV---LRPGGLLWID---SFFC--AKEDMNDYLEVFKMLKYKKHKWVVVPKRD----KDDRE  464 (480)
Q Consensus       399 --h~~d~~~l~~~L~EI~RV---LKPGG~fiI~---~f~~--~~edL~~~~~~l~~lGfkkl~W~~~~k~d----~~~~E  464 (480)
                        ...+..  ..++.|+.|+   +||- +|++-   ++..  ....++.+...++.+||. +.|.+..-.+    +.+.-
T Consensus        80 ~~g~~d~R--~~L~~~~~r~i~~~~Pk-~~~~ENV~gl~~~~~~~~~~~i~~~l~~~GY~-v~~~vlna~~yGvPQ~R~R  155 (331)
T 3ubt_Y           80 LRGIDDPR--GKLFYEYIRILKQKKPI-FFLAENVKGMMAQRHNKAVQEFIQEFDNAGYD-VHIILLNANDYGVAQDRKR  155 (331)
T ss_dssp             ECCTTCGG--GHHHHHHHHHHHHHCCS-EEEEEECCGGGGCTTSHHHHHHHHHHHHHTEE-EEEEEEEGGGTTCSBCCEE
T ss_pred             ccCCCCch--hHHHHHHHHHHhccCCe-EEEeeeecccccccccchhhhhhhhhccCCcE-EEEEecccccCCCCcccce
Confidence              112221  3455555555   6886 33443   2332  234467788889999997 5566543322    23444


Q ss_pred             eeEEEE
Q 046488          465 VFFSAV  470 (480)
Q Consensus       465 ~~lsav  470 (480)
                      +|+.++
T Consensus       156 vfivg~  161 (331)
T 3ubt_Y          156 VFYIGF  161 (331)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            555543

>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*

Probab=81.35  E-value=2.7  Score=41.18  Aligned_cols=94  Identities=7%  Similarity=0.024  Sum_probs=55.8

Q ss_pred             CCCCCCCCeEEEECCCC-cHHHHHHhhC--CCEEEEEecCCChhHHHHHHHhCCCCeeeecccCCC------CCCCccch
Q 046488          320 DIKPGEIRIGLDFSIGT-GTFAARMREF--NVTLVSAIINLGAPFNEMIALRGLVPLYITINQRVP------FFDNTLDL  390 (480)
Q Consensus       320 ~l~~g~iR~VLDVGCGt-G~fAa~Lae~--gV~Vv~vd~d~~~~~~~~iA~rglip~~~~~ae~LP------Fpd~SFDl  390 (480)
                      .+++++  +||=+|+|. |.++..+++.  +..++.++.+   +.....+++-+....+...+.+.      .....+|+
T Consensus       168 ~~~~g~--~vlv~GaG~vG~~a~qla~~~g~~~Vi~~~~~---~~~~~~~~~lGa~~~i~~~~~~~~~v~~~t~g~g~d~  242 (345)
T 3jv7_A          168 LLGPGS--TAVVIGVGGLGHVGIQILRAVSAARVIAVDLD---DDRLALAREVGADAAVKSGAGAADAIRELTGGQGATA  242 (345)
T ss_dssp             GCCTTC--EEEEECCSHHHHHHHHHHHHHCCCEEEEEESC---HHHHHHHHHTTCSEEEECSTTHHHHHHHHHGGGCEEE
T ss_pred             CCCCCC--EEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC---HHHHHHHHHcCCCEEEcCCCcHHHHHHHHhCCCCCeE
Confidence            355664  789999875 7777777764  6778877654   33334444434433332111000      01235777


Q ss_pred             heecccccCccChhcHHHHHHHHHhcccCCcEEEEee
Q 046488          391 IHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDS  427 (480)
Q Consensus       391 V~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~  427 (480)
                      |+-.-     ..    ...+.+..+.|+|||++++..
T Consensus       243 v~d~~-----G~----~~~~~~~~~~l~~~G~iv~~G  270 (345)
T 3jv7_A          243 VFDFV-----GA----QSTIDTAQQVVAVDGHISVVG  270 (345)
T ss_dssp             EEESS-----CC----HHHHHHHHHHEEEEEEEEECS
T ss_pred             EEECC-----CC----HHHHHHHHHHHhcCCEEEEEC
Confidence            76322     12    237899999999999998764

>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A

Probab=81.06  E-value=1.1  Score=44.60  Aligned_cols=93  Identities=15%  Similarity=0.097  Sum_probs=53.8

Q ss_pred             cCCCCCCCCeEEEECCCC-cHHHHHHhh-CCCEEEEEecCCChhHHHHHHHhCCCCeeeec------ccCCCCCCCccch
Q 046488          319 LDIKPGEIRIGLDFSIGT-GTFAARMRE-FNVTLVSAIINLGAPFNEMIALRGLVPLYITI------NQRVPFFDNTLDL  390 (480)
Q Consensus       319 L~l~~g~iR~VLDVGCGt-G~fAa~Lae-~gV~Vv~vd~d~~~~~~~~iA~rglip~~~~~------ae~LPFpd~SFDl  390 (480)
                      .++++|+  +||-+|+|. |.++..+++ .|..++.++.+..  ..+.+..-| ....+..      .+.+.   +.||+
T Consensus       175 ~~~~~g~--~VlV~GaG~vG~~~~qlak~~Ga~Vi~~~~~~~--~~~~~~~lG-a~~v~~~~~~~~~~~~~~---~~~D~  246 (360)
T 1piw_A          175 NGCGPGK--KVGIVGLGGIGSMGTLISKAMGAETYVISRSSR--KREDAMKMG-ADHYIATLEEGDWGEKYF---DTFDL  246 (360)
T ss_dssp             TTCSTTC--EEEEECCSHHHHHHHHHHHHHTCEEEEEESSST--THHHHHHHT-CSEEEEGGGTSCHHHHSC---SCEEE
T ss_pred             cCCCCCC--EEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHH--HHHHHHHcC-CCEEEcCcCchHHHHHhh---cCCCE
Confidence            4566664  899999863 677777776 4888888775432  222222223 2322221      11222   46888


Q ss_pred             heecccccCccChhcHHHHHHHHHhcccCCcEEEEe
Q 046488          391 IHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWID  426 (480)
Q Consensus       391 V~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~  426 (480)
                      |+-...-.   ...    .+.+..+.|||||+++..
T Consensus       247 vid~~g~~---~~~----~~~~~~~~l~~~G~iv~~  275 (360)
T 1piw_A          247 IVVCASSL---TDI----DFNIMPKAMKVGGRIVSI  275 (360)
T ss_dssp             EEECCSCS---TTC----CTTTGGGGEEEEEEEEEC
T ss_pred             EEECCCCC---cHH----HHHHHHHHhcCCCEEEEe
Confidence            87533210   011    466778999999998864

>3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157}

Probab=80.76  E-value=15  Score=37.31  Aligned_cols=138  Identities=14%  Similarity=-0.000  Sum_probs=72.9

Q ss_pred             eEEEECCCCcHHHHHHhhCCCEEE-EEecCCChhHHHHHHHh-CCCCeeeecccCCC--------CCCCccchheeccc-
Q 046488          328 IGLDFSIGTGTFAARMREFNVTLV-SAIINLGAPFNEMIALR-GLVPLYITINQRVP--------FFDNTLDLIHTTRF-  396 (480)
Q Consensus       328 ~VLDVGCGtG~fAa~Lae~gV~Vv-~vd~d~~~~~~~~iA~r-glip~~~~~ae~LP--------Fpd~SFDlV~ss~v-  396 (480)
                      +|+|+-||.|.++..+.+.|..++ +++.+  ..+....... .....+.++...+.        .....+|+|+..-= 
T Consensus         4 ~vidLFsG~GGlslG~~~aG~~~v~avE~d--~~a~~t~~~N~~~~~~~~~DI~~~~~~~~~~~~~~~~~~D~i~ggpPC   81 (376)
T 3g7u_A            4 NVIDLFSGVGGLSLGAARAGFDVKMAVEID--QHAINTHAINFPRSLHVQEDVSLLNAEIIKGFFKNDMPIDGIIGGPPC   81 (376)
T ss_dssp             EEEEETCTTSHHHHHHHHHTCEEEEEECSC--HHHHHHHHHHCTTSEEECCCGGGCCHHHHHHHHCSCCCCCEEEECCCC
T ss_pred             eEEEEccCcCHHHHHHHHCCCcEEEEEeCC--HHHHHHHHHhCCCCceEecChhhcCHHHHHhhcccCCCeeEEEecCCC
Confidence            699999999999999998888765 44443  3343333322 12233344433332        13467999986421 


Q ss_pred             --ccCc----cChhcHHHHHHH---HHhcccCCcEEEEe---eccCCh--hhHHHHHHHHHHcCceeeEEEEeeccC---
Q 046488          397 --LDGW----IDFVLLDFILYD---WDRVLRPGGLLWID---SFFCAK--EDMNDYLEVFKMLKYKKHKWVVVPKRD---  459 (480)
Q Consensus       397 --L~h~----~d~~~l~~~L~E---I~RVLKPGG~fiI~---~f~~~~--edL~~~~~~l~~lGfkkl~W~~~~k~d---  459 (480)
                        ++..    .++. ...++.|   +.+.+||.-. ++-   ++....  ..++.+. .++.+||.-..|.+..-.+   
T Consensus        82 Q~fS~ag~~~~~d~-r~~L~~~~~~~v~~~~P~~~-v~ENV~gl~s~~~~~~~~~i~-~l~~~GY~v~~~~vl~a~dyGv  158 (376)
T 3g7u_A           82 QGFSSIGKGNPDDS-RNQLYMHFYRLVSELQPLFF-LAENVPGIMQEKYSGIRNKAF-NLVSGDYDILDPIKVKASDYGA  158 (376)
T ss_dssp             CTTC-------CHH-HHHHHHHHHHHHHHHCCSEE-EEEECTTTTCGGGHHHHHHHH-HHHHTTEEECCCEEEEGGGGTC
T ss_pred             CCcccccCCCCCCc-hHHHHHHHHHHHHHhCCCEE-EEecchHhhccCcHHHHHHHH-HHHcCCCccCcEEEEEHhhCCC
Confidence              1111    0111 1234444   4445678543 332   232211  2345666 8899999864566543322   


Q ss_pred             -CCCcceeEEEE
Q 046488          460 -KDDREVFFSAV  470 (480)
Q Consensus       460 -~~~~E~~lsav  470 (480)
                       +.+.-+|+.++
T Consensus       159 PQ~R~R~~iig~  170 (376)
T 3g7u_A          159 PTIRTRYFFIGV  170 (376)
T ss_dssp             SBCCEEEEEEEE
T ss_pred             CCCCcEEEEEEE
Confidence             23445555554

>3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A*

Probab=80.34  E-value=2.9  Score=40.42  Aligned_cols=94  Identities=12%  Similarity=-0.013  Sum_probs=54.9

Q ss_pred             CCCCCCCCeEEEECC--CCcHHHHHHhhC-CCEEEEEecCCChhHHHHHHHhCCCCeeeeccc---CCCCCCCccchhee
Q 046488          320 DIKPGEIRIGLDFSI--GTGTFAARMREF-NVTLVSAIINLGAPFNEMIALRGLVPLYITINQ---RVPFFDNTLDLIHT  393 (480)
Q Consensus       320 ~l~~g~iR~VLDVGC--GtG~fAa~Lae~-gV~Vv~vd~d~~~~~~~~iA~rglip~~~~~ae---~LPFpd~SFDlV~s  393 (480)
                      .+.+++.+ ||=.|+  |.|.++..+++. |..++.++.+.  ... ..+++-+....+...+   ......+.+|+|+-
T Consensus       142 ~~~~~~g~-VlV~Ga~G~vG~~aiqla~~~Ga~Vi~~~~~~--~~~-~~~~~lGa~~vi~~~~~~~~~~~~~~~~d~v~d  217 (324)
T 3nx4_A          142 GIRPQDGE-VVVTGASGGVGSTAVALLHKLGYQVAAVSGRE--STH-GYLKSLGANRILSRDEFAESRPLEKQLWAGAID  217 (324)
T ss_dssp             TCCGGGCC-EEESSTTSHHHHHHHHHHHHTTCCEEEEESCG--GGH-HHHHHHTCSEEEEGGGSSCCCSSCCCCEEEEEE
T ss_pred             ccCCCCCe-EEEECCCcHHHHHHHHHHHHcCCEEEEEeCCH--HHH-HHHHhcCCCEEEecCCHHHHHhhcCCCccEEEE
Confidence            34444334 898886  567888888764 88888877542  222 2333322332222111   11122356887763


Q ss_pred             cccccCccChhcHHHHHHHHHhcccCCcEEEEee
Q 046488          394 TRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDS  427 (480)
Q Consensus       394 s~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~  427 (480)
                      .-      .    ...+.+..+.|+|||++++..
T Consensus       218 ~~------g----~~~~~~~~~~l~~~G~iv~~G  241 (324)
T 3nx4_A          218 TV------G----DKVLAKVLAQMNYGGCVAACG  241 (324)
T ss_dssp             SS------C----HHHHHHHHHTEEEEEEEEECC
T ss_pred             CC------C----cHHHHHHHHHHhcCCEEEEEe
Confidence            21      1    127899999999999998763

>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli}

Probab=80.33  E-value=5.3  Score=39.72  Aligned_cols=86  Identities=13%  Similarity=0.082  Sum_probs=53.8

Q ss_pred             CeEEEEC-C-CCcHHHHHHhhC--CCEEEEEecCCChhHHHHHHHhCCCCeeeec-------ccCCCCCCCccchheecc
Q 046488          327 RIGLDFS-I-GTGTFAARMREF--NVTLVSAIINLGAPFNEMIALRGLVPLYITI-------NQRVPFFDNTLDLIHTTR  395 (480)
Q Consensus       327 R~VLDVG-C-GtG~fAa~Lae~--gV~Vv~vd~d~~~~~~~~iA~rglip~~~~~-------ae~LPFpd~SFDlV~ss~  395 (480)
                      .+||=+| + |.|.++..+++.  |..++.++.+   +.....+++-+....+..       ...+  ..+.+|+|+-..
T Consensus       173 ~~VlV~Ga~G~vG~~a~qlak~~~g~~Vi~~~~~---~~~~~~~~~lGad~vi~~~~~~~~~v~~~--~~~g~Dvvid~~  247 (363)
T 4dvj_A          173 PAILIVGGAGGVGSIAVQIARQRTDLTVIATASR---PETQEWVKSLGAHHVIDHSKPLAAEVAAL--GLGAPAFVFSTT  247 (363)
T ss_dssp             EEEEEESTTSHHHHHHHHHHHHHCCSEEEEECSS---HHHHHHHHHTTCSEEECTTSCHHHHHHTT--CSCCEEEEEECS
T ss_pred             CEEEEECCCCHHHHHHHHHHHHhcCCEEEEEeCC---HHHHHHHHHcCCCEEEeCCCCHHHHHHHh--cCCCceEEEECC
Confidence            4799888 4 458888888874  7888887754   233334444333333321       1122  345788877422


Q ss_pred             cccCccChhcHHHHHHHHHhcccCCcEEEEe
Q 046488          396 FLDGWIDFVLLDFILYDWDRVLRPGGLLWID  426 (480)
Q Consensus       396 vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~  426 (480)
                      .     .    ...+.+..+.|+|||.+++.
T Consensus       248 g-----~----~~~~~~~~~~l~~~G~iv~~  269 (363)
T 4dvj_A          248 H-----T----DKHAAEIADLIAPQGRFCLI  269 (363)
T ss_dssp             C-----H----HHHHHHHHHHSCTTCEEEEC
T ss_pred             C-----c----hhhHHHHHHHhcCCCEEEEE
Confidence            1     1    23789999999999998875

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	480
d1xxla_	234	c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus	0.003
d2gh1a1	281	c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bac	0.004

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} Length = 234

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

 Score = 37.2 bits (85), Expect = 0.003
 Identities = 17/139 (12%), Positives = 38/139 (27%), Gaps = 4/139 (2%)

Query: 314 LIPEVLDIKPGEIRIGLDFSIGTGTFAARMREFNVTLVSAIINLGAPFNEMIALRGLVPL 373
           L+ +  + +    R+ LD   G G  A     +    +                +     
Sbjct: 7   LMIKTAECRAEH-RV-LDIGAGAGHTALAFSPYVQECIGVDATKEMVEVASSFAQEKGVE 64

Query: 374 YITINQRVPFFDNTLDLIHTTRFLDGWIDFVL-LDFILYDWDRVLRPGG-LLWIDSFFCA 431
            +   Q         D                 +   + +  RVL+  G  L +D +   
Sbjct: 65  NVRFQQGTAESLPFPDDSFDIITCRYAAHHFSDVRKAVREVARVLKQDGRFLLVDHYAPE 124

Query: 432 KEDMNDYLEVFKMLKYKKH 450
              +++++     L+   H
Sbjct: 125 DPVLDEFVNHLNRLRDPSH 143

>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} Length = 281

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: BC2162-like
domain: Methyltransferase BC2162
species: Bacillus cereus [TaxId: 1396]

 Score = 36.8 bits (84), Expect = 0.004
 Identities = 26/161 (16%), Positives = 50/161 (31%), Gaps = 16/161 (9%)

Query: 312 DFLIPEVLDIKPGEIRIGLDFSIGTGTFAARMREF-----NVTLVSAIINLGAPFNEMIA 366
            FL+  V  I    + I +D+  G G     +          T + +   L A   E+  
Sbjct: 16  SFLVNTVWKITKP-VHI-VDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFR 73

Query: 367 LRGLVPLYITINQRVPFFDNTLDLIHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLL--- 423
           L      ++  +      ++  D+     FL         + +L      ++ GG +   
Sbjct: 74  LLPYDSEFLEGDATEIELNDKYDIAICHAFLLHMTT---PETMLQKMIHSVKKGGKIICF 130

Query: 424 ---WIDSFFCAKEDMNDYLEVFKMLKYKKHKWVVVPKRDKD 461
              WI +      D     E  ++   +K       +  KD
Sbjct: 131 EPHWISNMASYLLDGEKQSEFIQLGVLQKLFESDTQRNGKD 171

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	480
d1vl5a_	231	Hypothetical protein BH2331 {Bacillus halodurans [	99.75
d1xxla_	234	Hypothetical protein YcgJ {Bacillus subtilis [TaxI	99.74
d2o57a1	282	Putative sarcosine dimethylglycine methyltransfera	99.7
d1vlma_	208	Possible histamine N-methyltransferase TM1293 {The	99.64
d2avna1	246	Hypothetical methyltransferase TM1389 {Thermotoga	99.64
d1nkva_	245	Hypothetical Protein YjhP {Escherichia coli [TaxId	99.63
d1ve3a1	226	Hypothetical protein PH0226 {Archaeon Pyrococcus h	99.63
d2ex4a1	222	Adrenal gland protein AD-003 (C9orf32) {Human (Hom	99.6
d1kpia_	291	CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}	99.55
d2p7ia1	225	Hypothetical protein ECA1738 {Erwinia carotovora [	99.53
d1wzna1	251	Hypothetical methyltransferase PH1305 {Archaeon Py	99.53
d1xtpa_	254	Hypothetical protein Lmaj004091aaa (LmjF30.0810) {	99.52
d1im8a_	225	Hypothetical protein HI0319 (YecO) {Haemophilus in	99.49
d2i6ga1	198	Putative methyltransferase TehB {Salmonella typhim	99.48
d1tw3a2	253	Carminomycin 4-O-methyltransferase {Streptomyces p	99.48
d1y8ca_	246	Putative methyltransferase CAC2371 {Clostridium ac	99.47
d1p91a_	268	rRNA methyltransferase RlmA {Escherichia coli [Tax	99.47
d2fk8a1	280	Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri	99.46
d1kpga_	285	CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}	99.45
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	99.45
d2a14a1	257	Indolethylamine N-methyltransferase, INMT {Human (	99.45
d2gh1a1	281	Methyltransferase BC2162 {Bacillus cereus [TaxId:	99.39
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	99.39
d1ri5a_	252	mRNA cap (Guanine N-7) methyltransferase {Fungus (	99.38
d1qzza2	256	Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu	99.36
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	99.34
d1g8sa_	230	Fibrillarin homologue {Archaeon Methanococcus jann	99.31
d2g72a1	263	Phenylethanolamine N-methyltransferase, PNMTase {H	99.29
d1l3ia_	186	Precorrin-6Y methyltransferase (CbiT) {Archaeon Me	99.27
d1xvaa_	292	Glycine N-methyltransferase {Rat (Rattus norvegicu	99.25
d1jqea_	280	Histamine methyltransferase {Human (Homo sapiens)	99.23
d1dusa_	194	Hypothetical protein MJ0882 {Archaeon Methanococcu	99.23
d1zx0a1	229	Guanidinoacetate methyltransferase {Human (Homo sa	99.2
d1yb2a1	250	Hypothetical protein Ta0852 {Thermoplasma acidophi	99.19
d1i9ga_	264	Probable methyltransferase Rv2118c {Mycobacterium	99.18
d1nt2a_	209	Fibrillarin homologue {Archaeon Archaeoglobus fulg	99.14
d1g6q1_	328	Arginine methyltransferase, HMT1 {Baker's yeast (S	99.14
d1oria_	316	Protein arginine N-methyltransferase 1, PRMT1 {Rat	99.13
d2fyta1	311	Protein arginine N-methyltransferase 3, PRMT3 {Hum	99.1
d1dl5a1	213	Protein-L-isoaspartyl O-methyltransferase {Thermot	99.07
d2fcaa1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil	99.06
d1o54a_	266	Hypothetical protein TM0748 {Thermotoga maritima [	99.02
d1g8aa_	227	Fibrillarin homologue {Archaeon Pyrococcus horikos	99.01
d1nw3a_	328	Catalytic, N-terminal domain of histone methyltran	98.97
d2b25a1	324	Hypothetical protein FLJ20628 {Human (Homo sapiens	98.94
d1yzha1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep	98.92
d1i1na_	224	Protein-L-isoaspartyl O-methyltransferase {Human (	98.9
d1fp1d2	244	Chalcone O-methyltransferase {Alfalfa (Medicago sa	98.88
d1vbfa_	224	Protein-L-isoaspartyl O-methyltransferase {Sulfolo	98.83
d1u2za_	406	Catalytic, N-terminal domain of histone methyltran	98.7
d1kyza2	243	Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra	98.66
d1fp2a2	244	Isoflavone O-methyltransferase {Alfalfa (Medicago	98.66
d2b3ta1	274	N5-glutamine methyltransferase, HemK {Escherichia	98.55
d1r18a_	223	Protein-L-isoaspartyl O-methyltransferase {Fruit f	98.54
d1af7a2	193	Chemotaxis receptor methyltransferase CheR, C-term	98.47
d1jg1a_	215	Protein-L-isoaspartyl O-methyltransferase {Archaeo	98.46
d2frna1	260	Hypothetical protein PH0793 {Pyrococcus horikoshii	98.27
d1ej0a_	180	RNA methyltransferase FtsJ {Escherichia coli [TaxI	98.17
d2as0a2	324	Hypothetical protein PH1915, middle and C-terminal	98.16
d2cl5a1	214	Catechol O-methyltransferase, COMT {Rat (Rattus no	98.1
d1wxxa2	318	Hypothetical protein TTHA1280, middle and C-termin	98.05
d1m6ya2	192	TM0872, methyltransferase domain {Thermotoga marit	98.02
d2esra1	152	Putative methyltransferase SPy1538 {Streptococcus	97.93
d1ne2a_	197	Hypothetical protein Ta1320 {Archaeon Thermoplasma	97.91
d2avda1	219	COMT domain-containing protein 1, COMTD1 {Human (H	97.86
d1wy7a1	201	Hypothetical protein PH1948 {Archaeon Pyrococcus h	97.85
d2igta1	309	Putative methyltransferase Atu0340 {Agrobacterium	97.84
d2h00a1	250	Methyltransferase 10 domain containing protein MET	97.76
d1ws6a1	171	Methyltransferase TTHA0928 {Thermus thermophilus [	97.73
d2b78a2	317	Hypothetical protein SMu776, middle and C-terminal	97.73
d1susa1	227	Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag	97.43
d1nv8a_	271	N5-glutamine methyltransferase, HemK {Thermotoga m	97.43
d1sqga2	284	Ribosomal RNA small subunit methyltransferase B, R	97.42
d1ixka_	313	Hypothetical methyltransferase PH1374 {Archaeon Py	97.36
d1mjfa_	276	Putative spermidine synthetase PF0127 (SpeE) {Arch	97.33
d1uira_	312	Spermidine synthase {Thermus thermophilus [TaxId:	97.31
d2fpoa1	183	Methylase YhhF {Escherichia coli [TaxId: 562]}	97.3
d2ih2a1	223	DNA methylase TaqI, N-terminal domain {Thermus aqu	97.27
d2f8la1	328	Hypothetical protein Lmo1582 {Listeria monocytogen	97.1
d1yuba_	245	rRNA adenine dimethylase {Streptococcus pneumoniae	96.97
d2fhpa1	182	Putative methylase EF2452 {Enterococcus faecalis [	96.93
d1uwva2	358	rRNA (Uracil-5-)-methyltransferase RumA, catalytic	96.89
d1qama_	235	rRNA adenine dimethylase {Bacillus subtilis, Ermc'	96.82
d1wg8a2	182	TM0872, methyltransferase domain {Thermus thermoph	96.74
d1xdza_	239	Glucose-inhibited division protein B (GidB) {Bacil	96.7
d2p41a1	257	An RNA cap (nucleoside-2'-O-)-methyltransferase do	96.49
d1xj5a_	290	Spermidine synthase {Thale cress (Arabidopsis thal	96.34
d1jsxa_	207	Glucose-inhibited division protein B (GidB) {Esche	96.34
d1iy9a_	274	Spermidine synthase {Bacillus subtilis [TaxId: 142	96.33
d1inla_	295	Spermidine synthase {Thermotoga maritima [TaxId: 2	96.33
d2o07a1	285	Spermidine synthase {Human (Homo sapiens) [TaxId:	96.25
d2b2ca1	312	Spermidine synthase {Caenorhabditis elegans [TaxId	96.21
d2ifta1	183	Putative methylase HI0767 {Haemophilus influenzae	95.84
d2b9ea1	293	NOL1R {Human (Homo sapiens) [TaxId: 9606]}	95.35
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	95.27
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	95.03
d2bm8a1	232	Cephalosporin hydroxylase CmcI {Streptomyces clavu	94.95
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	94.56
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	93.74
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	93.73
d1qyra_	252	High level kasugamycin resistance protein KsgA {Es	93.59
d2okca1	425	Type I restriction enzyme StySJI M protein {Bacter	93.17
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	92.91
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	92.28
d1zq9a1	278	Probable dimethyladenosine transferase {Human (Hom	91.83
d2ar0a1	524	M.EcoKI {Escherichia coli [TaxId: 562]}	90.52
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	89.98
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	89.88
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	89.82
d1g60a_	256	Methyltransferase mboII {Moraxella bovis [TaxId: 4	89.63
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	89.5
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	89.41
d1eg2a_	279	m.RsrI N6 adenosine-specific DNA methyltransferase	88.92
d1m6ex_	359	Salicylic acid carboxyl methyltransferase (SAMT) {	88.91
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	88.57
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	88.38
d2dula1	375	N(2),N(2)-dimethylguanosine tRNA methyltransferase	87.96
d1v3va2	182	Leukotriene b4 12-hydroxydehydrogenase/prostagland	86.99
d1vj1a2	187	Putative zinc-binding alcohol dehydrogenase {Mouse	86.48
d1xa0a2	176	B. subtilis YhfP homologue {Bacillus stearothermop	84.49
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	83.93
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	83.33
d2oyra1	250	Hypothetical protein YhiQ {Shigella flexneri [TaxI	83.01
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	82.52
d2c7pa1	327	DNA methylase HhaI {Haemophilus haemolyticus [TaxI	81.88

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

Probab=99.75  E-value=4.7e-18  Score=156.58  Aligned_cols=128  Identities=19%  Similarity=0.261  Sum_probs=96.3

Q ss_pred             HhcCCCCCCCCeEEEECCCCcHHHHHHhhCCCEEEEEecCCChhHHH----HHHHhCC--CCeeeecccCCCCCCCccch
Q 046488          317 EVLDIKPGEIRIGLDFSIGTGTFAARMREFNVTLVSAIINLGAPFNE----MIALRGL--VPLYITINQRVPFFDNTLDL  390 (480)
Q Consensus       317 ~vL~l~~g~iR~VLDVGCGtG~fAa~Lae~gV~Vv~vd~d~~~~~~~----~iA~rgl--ip~~~~~ae~LPFpd~SFDl  390 (480)
                      +.++++++.  +|||||||+|.++..+++++..+++++++.  .+..    .+...+.  +.+..++++.+||++++||+
T Consensus         9 ~~~~l~~~~--rVLDiGcG~G~~~~~l~~~~~~v~gvD~s~--~~i~~A~~~~~~~~~~~i~~~~~d~~~l~~~~~~fD~   84 (231)
T d1vl5a_           9 QIAALKGNE--EVLDVATGGGHVANAFAPFVKKVVAFDLTE--DILKVARAFIEGNGHQQVEYVQGDAEQMPFTDERFHI   84 (231)
T ss_dssp             HHHTCCSCC--EEEEETCTTCHHHHHHGGGSSEEEEEESCH--HHHHHHHHHHHHTTCCSEEEEECCC-CCCSCTTCEEE
T ss_pred             HhcCCCCcC--EEEEecccCcHHHHHHHHhCCEEEEEECCH--HHHhhhhhccccccccccccccccccccccccccccc
Confidence            455677765  899999999999999999998999888763  2222    2223333  34566779999999999999


Q ss_pred             heecccccCccChhcHHHHHHHHHhcccCCcEEEEeeccCChhh----------------------HHHHHHHHHHcCce
Q 046488          391 IHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDSFFCAKED----------------------MNDYLEVFKMLKYK  448 (480)
Q Consensus       391 V~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~f~~~~ed----------------------L~~~~~~l~~lGfk  448 (480)
                      |+|..+++|+.++   ..+|.|++|+|||||++++..+..+...                      .+.+..++++.||.
T Consensus        85 v~~~~~l~~~~d~---~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~  161 (231)
T d1vl5a_          85 VTCRIAAHHFPNP---ASFVSEAYRVLKKGGQLLLVDNSAPENDAFDVFYNYVEKERDYSHHRAWKKSDWLKMLEEAGFE  161 (231)
T ss_dssp             EEEESCGGGCSCH---HHHHHHHHHHEEEEEEEEEEEEEBCSSHHHHHHHHHHHHHHCTTCCCCCBHHHHHHHHHHHTCE
T ss_pred             ccccccccccCCH---HHHHHHHHHhcCCCcEEEEEeCCCCCCHHHHHHHHHHHhhcccCcccCCCHHHHHHHHHHCCCE
Confidence            9999999999877   4699999999999999998754322111                      13466788889997


Q ss_pred             eeE
Q 046488          449 KHK  451 (480)
Q Consensus       449 kl~  451 (480)
                      .+.
T Consensus       162 ~~~  164 (231)
T d1vl5a_         162 LEE  164 (231)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            543

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

Probab=99.74  E-value=6.5e-18  Score=157.64  Aligned_cols=111  Identities=15%  Similarity=0.238  Sum_probs=87.3

Q ss_pred             HHHhcCCCCCCCCeEEEECCCCcHHHHHHhhCCCEEEEEecCCC--hhHHHHHHHhCC--CCeeeecccCCCCCCCccch
Q 046488          315 IPEVLDIKPGEIRIGLDFSIGTGTFAARMREFNVTLVSAIINLG--APFNEMIALRGL--VPLYITINQRVPFFDNTLDL  390 (480)
Q Consensus       315 I~~vL~l~~g~iR~VLDVGCGtG~fAa~Lae~gV~Vv~vd~d~~--~~~~~~iA~rgl--ip~~~~~ae~LPFpd~SFDl  390 (480)
                      +-+.+++++|.  +|||||||||.++..|++++..++++|++..  ..++..+...+.  +.++.++++.+||++++||+
T Consensus         8 l~~~~~~~~~~--rILDiGcGtG~~~~~la~~~~~v~gvD~S~~~l~~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~   85 (234)
T d1xxla_           8 MIKTAECRAEH--RVLDIGAGAGHTALAFSPYVQECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFPDDSFDI   85 (234)
T ss_dssp             HHHHHTCCTTC--EEEEESCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCSCTTCEEE
T ss_pred             HHHHhCCCCCC--EEEEeCCcCcHHHHHHHHhCCeEEEEeCChhhhhhhhhhhcccccccccccccccccccccccccce
Confidence            44667888886  8999999999999999999889999887631  111122223332  34566778999999999999


Q ss_pred             heecccccCccChhcHHHHHHHHHhcccCCcEEEEeeccC
Q 046488          391 IHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDSFFC  430 (480)
Q Consensus       391 V~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~f~~  430 (480)
                      |+|..+++|+.++   ..+++|+.|+|||||++++..+..
T Consensus        86 v~~~~~l~~~~d~---~~~l~~~~r~LkpgG~~~~~~~~~  122 (234)
T d1xxla_          86 ITCRYAAHHFSDV---RKAVREVARVLKQDGRFLLVDHYA  122 (234)
T ss_dssp             EEEESCGGGCSCH---HHHHHHHHHHEEEEEEEEEEEECB
T ss_pred             eeeeceeecccCH---HHHHHHHHHeeCCCcEEEEEEcCC
Confidence            9999999988776   469999999999999999875544

>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Putative sarcosine dimethylglycine methyltransferase
species: Red algae (Galdieria sulphuraria) [TaxId: 130081]

Probab=99.70  E-value=4.5e-17  Score=156.41  Aligned_cols=130  Identities=19%  Similarity=0.157  Sum_probs=97.5

Q ss_pred             CCCCCCCCeEEEECCCCcHHHHHHhhC-CCEEEEEecCCCh--hHHHHHHHhCC---CCeeeecccCCCCCCCccchhee
Q 046488          320 DIKPGEIRIGLDFSIGTGTFAARMREF-NVTLVSAIINLGA--PFNEMIALRGL---VPLYITINQRVPFFDNTLDLIHT  393 (480)
Q Consensus       320 ~l~~g~iR~VLDVGCGtG~fAa~Lae~-gV~Vv~vd~d~~~--~~~~~iA~rgl---ip~~~~~ae~LPFpd~SFDlV~s  393 (480)
                      ++.++.  +|||||||+|.++..|+++ +..|++++++...  .+.......|+   +.+..++++.+||++++||+|++
T Consensus        64 ~l~~~~--~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~~d~~~l~~~~~sfD~V~~  141 (282)
T d2o57a1          64 VLQRQA--KGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPCEDNSYDFIWS  141 (282)
T ss_dssp             CCCTTC--EEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSSCTTCEEEEEE
T ss_pred             CCCCCC--EEEEeCCCCcHHHhhhhccCCcEEEEEeccchhhhhhhcccccccccccccccccccccccccccccchhhc
Confidence            455554  8999999999999999986 8889988876311  11122223333   44566778999999999999999


Q ss_pred             cccccCccChhcHHHHHHHHHhcccCCcEEEEeeccCCh----h---------------hHHHHHHHHHHcCceeeEEEE
Q 046488          394 TRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDSFFCAK----E---------------DMNDYLEVFKMLKYKKHKWVV  454 (480)
Q Consensus       394 s~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~f~~~~----e---------------dL~~~~~~l~~lGfkkl~W~~  454 (480)
                      ..+++|+.++   ..+|.|+.|+|||||+|++..+....    .               ....+..+++..||..+.+..
T Consensus       142 ~~~l~h~~d~---~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~~Gf~~i~~~d  218 (282)
T d2o57a1         142 QDAFLHSPDK---LKVFQECARVLKPRGVMAITDPMKEDGIDKSSIQPILDRIKLHDMGSLGLYRSLAKECGLVTLRTFS  218 (282)
T ss_dssp             ESCGGGCSCH---HHHHHHHHHHEEEEEEEEEEEEEECTTCCGGGGHHHHHHHTCSSCCCHHHHHHHHHHTTEEEEEEEE
T ss_pred             cchhhhccCH---HHHHHHHHHhcCCCcEEEEEEeecCCCCchhHHHHHHHHhccCCCCCHHHHHHHHHHcCCceEEEEE
Confidence            9999999876   46999999999999999987543211    0               134567889999998776653

>d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Possible histamine N-methyltransferase TM1293
species: Thermotoga maritima [TaxId: 2336]

Probab=99.64  E-value=4.5e-16  Score=141.72  Aligned_cols=116  Identities=18%  Similarity=0.238  Sum_probs=91.4

Q ss_pred             eEEEECCCCcHHHHHHhhCCCEEEEEecCCChhHHHHHHHhCCCCeeeecccCCCCCCCccchheecccccCccChhcHH
Q 046488          328 IGLDFSIGTGTFAARMREFNVTLVSAIINLGAPFNEMIALRGLVPLYITINQRVPFFDNTLDLIHTTRFLDGWIDFVLLD  407 (480)
Q Consensus       328 ~VLDVGCGtG~fAa~Lae~gV~Vv~vd~d~~~~~~~~iA~rglip~~~~~ae~LPFpd~SFDlV~ss~vL~h~~d~~~l~  407 (480)
                      +|||||||+|.++..+++    +++++++   +.+...+.++.+.+..++++.+|+++++||+|+|..+|+|+.++   .
T Consensus        39 ~vLDiGcG~G~~~~~~~~----~~giD~s---~~~~~~a~~~~~~~~~~d~~~l~~~~~~fD~I~~~~~l~h~~d~---~  108 (208)
T d1vlma_          39 RGVEIGVGTGRFAVPLKI----KIGVEPS---ERMAEIARKRGVFVLKGTAENLPLKDESFDFALMVTTICFVDDP---E  108 (208)
T ss_dssp             CEEEETCTTSTTHHHHTC----CEEEESC---HHHHHHHHHTTCEEEECBTTBCCSCTTCEEEEEEESCGGGSSCH---H
T ss_pred             eEEEECCCCcccccccce----EEEEeCC---hhhccccccccccccccccccccccccccccccccccccccccc---c
Confidence            699999999999998864    3566654   34445566667778888899999999999999999999999876   4


Q ss_pred             HHHHHHHhcccCCcEEEEeeccCCh----------------h-----hHHHHHHHHHHcCceeeEEE
Q 046488          408 FILYDWDRVLRPGGLLWIDSFFCAK----------------E-----DMNDYLEVFKMLKYKKHKWV  453 (480)
Q Consensus       408 ~~L~EI~RVLKPGG~fiI~~f~~~~----------------e-----dL~~~~~~l~~lGfkkl~W~  453 (480)
                      .+|.|++|+|||||++++..+....                .     ..+.+.+++++.||+.+...
T Consensus       109 ~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~l~~~Gf~~i~v~  175 (208)
T d1vlma_         109 RALKEAYRILKKGGYLIVGIVDRESFLGREYEKNKEKSVFYKNARFFSTEELMDLMRKAGFEEFKVV  175 (208)
T ss_dssp             HHHHHHHHHEEEEEEEEEEEECSSSHHHHHHHHTTTC-CCSTTCCCCCHHHHHHHHHHTTCEEEEEE
T ss_pred             cchhhhhhcCCCCceEEEEecCCcchhHHhhhhccccccccccccCCCHHHHHHHHHHcCCeEEEEE
Confidence            6999999999999999887422110                0     12457889999999987644

>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical methyltransferase TM1389
species: Thermotoga maritima [TaxId: 2336]

Probab=99.64  E-value=1.3e-16  Score=146.98  Aligned_cols=96  Identities=21%  Similarity=0.226  Sum_probs=77.9

Q ss_pred             CeEEEECCCCcHHHHHHhhCCCEEEEEecCCChhHHHHHHHhCCCCeeeecccCCCCCCCccchheec-ccccCccChhc
Q 046488          327 RIGLDFSIGTGTFAARMREFNVTLVSAIINLGAPFNEMIALRGLVPLYITINQRVPFFDNTLDLIHTT-RFLDGWIDFVL  405 (480)
Q Consensus       327 R~VLDVGCGtG~fAa~Lae~gV~Vv~vd~d~~~~~~~~iA~rglip~~~~~ae~LPFpd~SFDlV~ss-~vL~h~~d~~~  405 (480)
                      .+|||+|||+|.++..|++.|..++++|++  ..+...+.+++....+.+.++.+||++++||+|+|. .+++|+.++  
T Consensus        44 ~~vLDiGcG~G~~~~~l~~~~~~v~giD~s--~~~l~~a~~~~~~~~~~~~~~~l~~~~~~fD~ii~~~~~~~~~~d~--  119 (246)
T d2avna1          44 CRVLDLGGGTGKWSLFLQERGFEVVLVDPS--KEMLEVAREKGVKNVVEAKAEDLPFPSGAFEAVLALGDVLSYVENK--  119 (246)
T ss_dssp             CEEEEETCTTCHHHHHHHTTTCEEEEEESC--HHHHHHHHHHTCSCEEECCTTSCCSCTTCEEEEEECSSHHHHCSCH--
T ss_pred             CEEEEECCCCchhcccccccceEEEEeecc--cccccccccccccccccccccccccccccccceeeecchhhhhhhH--
Confidence            379999999999999999999999999876  244444434444455667789999999999999985 577777776  


Q ss_pred             HHHHHHHHHhcccCCcEEEEee
Q 046488          406 LDFILYDWDRVLRPGGLLWIDS  427 (480)
Q Consensus       406 l~~~L~EI~RVLKPGG~fiI~~  427 (480)
                       ..+|.|+.|+|||||+++++.
T Consensus       120 -~~~l~~i~r~Lk~gG~~ii~~  140 (246)
T d2avna1         120 -DKAFSEIRRVLVPDGLLIATV  140 (246)
T ss_dssp             -HHHHHHHHHHEEEEEEEEEEE
T ss_pred             -HHHHHHHHhhcCcCcEEEEEE
Confidence             469999999999999998863

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

Probab=99.63  E-value=5.1e-16  Score=145.77  Aligned_cols=131  Identities=18%  Similarity=0.150  Sum_probs=97.5

Q ss_pred             hHHHhcCCCCCCCCeEEEECCCCcHHHHHHhhC-CCEEEEEecCCChhHHH----HHHHhCC---CCeeeecccCCCCCC
Q 046488          314 LIPEVLDIKPGEIRIGLDFSIGTGTFAARMREF-NVTLVSAIINLGAPFNE----MIALRGL---VPLYITINQRVPFFD  385 (480)
Q Consensus       314 ~I~~vL~l~~g~iR~VLDVGCGtG~fAa~Lae~-gV~Vv~vd~d~~~~~~~----~iA~rgl---ip~~~~~ae~LPFpd  385 (480)
                      .+.+.+.+.+|.  +|||||||+|.++..|+++ |..+++++++.  .+.+    .....|.   +.+..++.+.+ +++
T Consensus        24 ~l~~~~~l~pg~--~VLDiGCG~G~~~~~la~~~~~~v~GvD~s~--~~~~~ar~~~~~~gl~~~v~~~~~d~~~~-~~~   98 (245)
T d1nkva_          24 TLGRVLRMKPGT--RILDLGSGSGEMLCTWARDHGITGTGIDMSS--LFTAQAKRRAEELGVSERVHFIHNDAAGY-VAN   98 (245)
T ss_dssp             HHHHHTCCCTTC--EEEEETCTTCHHHHHHHHHTCCEEEEEESCH--HHHHHHHHHHHHTTCTTTEEEEESCCTTC-CCS
T ss_pred             HHHHHcCCCCCC--EEEEEcCCCCHHHHHHHHhcCCEEEEEeccc--chhhHHHHHHHHhhccccchhhhhHHhhc-ccc
Confidence            355788898886  8999999999999999875 88999998762  2222    2222233   44566777777 578


Q ss_pred             CccchheecccccCccChhcHHHHHHHHHhcccCCcEEEEeecc--CCh-----------------hhHHHHHHHHHHcC
Q 046488          386 NTLDLIHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDSFF--CAK-----------------EDMNDYLEVFKMLK  446 (480)
Q Consensus       386 ~SFDlV~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~f~--~~~-----------------edL~~~~~~l~~lG  446 (480)
                      ++||+|+|..+++|+.+.   ..++.|++|+|||||++++....  ...                 .....+...++..|
T Consensus        99 ~~fD~v~~~~~~~~~~d~---~~~l~~~~r~LkPGG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aG  175 (245)
T d1nkva_          99 EKCDVAACVGATWIAGGF---AGAEELLAQSLKPGGIMLIGEPYWRQLPATEEIAQACGVSSTSDFLTLPGLVGAFDDLG  175 (245)
T ss_dssp             SCEEEEEEESCGGGTSSS---HHHHHHHTTSEEEEEEEEEEEEEETTCCSSHHHHHTTTCSCGGGSCCHHHHHHHHHTTT
T ss_pred             CceeEEEEEehhhccCCH---HHHHHHHHHHcCcCcEEEEEeccccCCCChHHHHHHhccCCCcccCCHHHHHHHHHHcC
Confidence            999999999999999876   46999999999999999986321  100                 01345778899999


Q ss_pred             ceeeEE
Q 046488          447 YKKHKW  452 (480)
Q Consensus       447 fkkl~W  452 (480)
                      |..+..
T Consensus       176 ~~~v~~  181 (245)
T d1nkva_         176 YDVVEM  181 (245)
T ss_dssp             BCCCEE
T ss_pred             CEEEEE
Confidence            976653

>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical protein PH0226
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.63  E-value=2e-16  Score=143.81  Aligned_cols=102  Identities=20%  Similarity=0.283  Sum_probs=79.0

Q ss_pred             CCCCCCCeEEEECCCCcHHHHHHhhCCCEEEEEecCCChhHHHHH----HHhCC-CCeeeecccCCCCCCCccchheecc
Q 046488          321 IKPGEIRIGLDFSIGTGTFAARMREFNVTLVSAIINLGAPFNEMI----ALRGL-VPLYITINQRVPFFDNTLDLIHTTR  395 (480)
Q Consensus       321 l~~g~iR~VLDVGCGtG~fAa~Lae~gV~Vv~vd~d~~~~~~~~i----A~rgl-ip~~~~~ae~LPFpd~SFDlV~ss~  395 (480)
                      +.++.  +|||||||+|.++..|++.+..++++|++.  .+...+    ...+. +....++++.+|+++++||+|+|..
T Consensus        35 l~~~~--~ILDiGcG~G~~~~~la~~~~~v~giD~S~--~~i~~ak~~~~~~~~~~~~~~~d~~~l~~~~~~fD~I~~~~  110 (226)
T d1ve3a1          35 MKKRG--KVLDLACGVGGFSFLLEDYGFEVVGVDISE--DMIRKAREYAKSRESNVEFIVGDARKLSFEDKTFDYVIFID  110 (226)
T ss_dssp             CCSCC--EEEEETCTTSHHHHHHHHTTCEEEEEESCH--HHHHHHHHHHHHTTCCCEEEECCTTSCCSCTTCEEEEEEES
T ss_pred             cCCCC--EEEEECCCcchhhhhHhhhhcccccccccc--cchhhhhhhhccccccccccccccccccccCcCceEEEEec
Confidence            44443  799999999999999999999999988752  333222    12222 3344566889999999999999999


Q ss_pred             cccCccChhcHHHHHHHHHhcccCCcEEEEee
Q 046488          396 FLDGWIDFVLLDFILYDWDRVLRPGGLLWIDS  427 (480)
Q Consensus       396 vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~  427 (480)
                      +++|+.+.+ +..+|.|+.|+|||||++++..
T Consensus       111 ~l~~~~~~d-~~~~l~~i~~~LkpgG~lii~~  141 (226)
T d1ve3a1         111 SIVHFEPLE-LNQVFKEVRRVLKPSGKFIMYF  141 (226)
T ss_dssp             CGGGCCHHH-HHHHHHHHHHHEEEEEEEEEEE
T ss_pred             chhhCChhH-HHHHHHHHHHHcCcCcEEEEEE
Confidence            999886433 4679999999999999998863

>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Adrenal gland protein AD-003 (C9orf32)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=5.7e-15  Score=136.83  Aligned_cols=126  Identities=16%  Similarity=0.084  Sum_probs=94.0

Q ss_pred             CCeEEEECCCCcHHHHHHhhC-CCEEEEEecCCChhHHHHHHHh----CC--CCeeeecccCCCCCCCccchheeccccc
Q 046488          326 IRIGLDFSIGTGTFAARMREF-NVTLVSAIINLGAPFNEMIALR----GL--VPLYITINQRVPFFDNTLDLIHTTRFLD  398 (480)
Q Consensus       326 iR~VLDVGCGtG~fAa~Lae~-gV~Vv~vd~d~~~~~~~~iA~r----gl--ip~~~~~ae~LPFpd~SFDlV~ss~vL~  398 (480)
                      ..+|||||||+|.++..|+.+ +..+++++++  ..+...+.++    +.  +.+..++++.+++++++||+|++..+++
T Consensus        61 ~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s--~~~l~~ak~~~~~~~~~~~~f~~~d~~~~~~~~~~fD~I~~~~~l~  138 (222)
T d2ex4a1          61 TSCALDCGAGIGRITKRLLLPLFREVDMVDIT--EDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWVIG  138 (222)
T ss_dssp             CSEEEEETCTTTHHHHHTTTTTCSEEEEEESC--HHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEESCGG
T ss_pred             CCEEEEeccCCCHhhHHHHHhcCCEEEEeecC--HHHhhccccccccccccccccccccccccccccccccccccccccc
Confidence            358999999999999998765 4568787765  2343332221    11  2345567889999999999999999999


Q ss_pred             CccChhcHHHHHHHHHhcccCCcEEEEeeccCChh------------hHHHHHHHHHHcCceeeEEEE
Q 046488          399 GWIDFVLLDFILYDWDRVLRPGGLLWIDSFFCAKE------------DMNDYLEVFKMLKYKKHKWVV  454 (480)
Q Consensus       399 h~~d~~~l~~~L~EI~RVLKPGG~fiI~~f~~~~e------------dL~~~~~~l~~lGfkkl~W~~  454 (480)
                      |+.+++ +..++.++.|+|||||.+++..+.....            ..+.+.++++..||+.+....
T Consensus       139 h~~~~~-~~~~l~~i~~~Lk~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aGf~ii~~~~  205 (222)
T d2ex4a1         139 HLTDQH-LAEFLRRCKGSLRPNGIIVIKDNMAQEGVILDDVDSSVCRDLDVVRRIICSAGLSLLAEER  205 (222)
T ss_dssp             GSCHHH-HHHHHHHHHHHEEEEEEEEEEEEEBSSSEEEETTTTEEEEBHHHHHHHHHHTTCCEEEEEE
T ss_pred             cchhhh-hhhHHHHHHHhcCCcceEEEEEcccccccccccCCceeeCCHHHHHHHHHHcCCEEEEEEE
Confidence            987654 3679999999999999999875433221            246788999999998776544

>d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA2
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.55  E-value=2e-14  Score=141.15  Aligned_cols=137  Identities=13%  Similarity=0.103  Sum_probs=98.4

Q ss_pred             HhcCCCCCCCCeEEEECCCCcHHHHHHhhC-CCEEEEEecCCChh--HHHHHHHhCCCCeeeecccCCCCCCCccchhee
Q 046488          317 EVLDIKPGEIRIGLDFSIGTGTFAARMREF-NVTLVSAIINLGAP--FNEMIALRGLVPLYITINQRVPFFDNTLDLIHT  393 (480)
Q Consensus       317 ~vL~l~~g~iR~VLDVGCGtG~fAa~Lae~-gV~Vv~vd~d~~~~--~~~~iA~rglip~~~~~ae~LPFpd~SFDlV~s  393 (480)
                      +.+++++|.  +|||||||.|+++.+++++ |+.+++++++....  ++..+...++.....-.....++++++||.|+|
T Consensus        55 ~~l~l~~G~--~VLDiGCG~G~~~~~~a~~~g~~v~git~s~~q~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~fD~i~s  132 (291)
T d1kpia_          55 DKLNLEPGM--TLLDIGCGWGSTMRHAVAEYDVNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEFDEPVDRIVS  132 (291)
T ss_dssp             HTTCCCTTC--EEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHSCCSSCEEEEECCGGGCCCCCSEEEE
T ss_pred             HhcCCCCCC--EEEEecCcchHHHHHHHHhcCcceeeccchHHHHHHHHHHHHhhccchhhhhhhhcccccccccceEee
Confidence            456788776  8999999999999999865 99999988763211  122334445443333334556788999999999


Q ss_pred             cccccCccCh------hcHHHHHHHHHhcccCCcEEEEeeccCCh--------------------------------hhH
Q 046488          394 TRFLDGWIDF------VLLDFILYDWDRVLRPGGLLWIDSFFCAK--------------------------------EDM  435 (480)
Q Consensus       394 s~vL~h~~d~------~~l~~~L~EI~RVLKPGG~fiI~~f~~~~--------------------------------edL  435 (480)
                      ..++.|+.+.      .....++++++|+|||||++++..+....                                ..+
T Consensus       133 ie~~eH~~~~~~~~~~~~~~~~f~~i~~~LkpgG~~~l~~i~~~~~~~~~~~~~~~p~~~~~~~~fi~kyiFpgg~lps~  212 (291)
T d1kpia_         133 LGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITIPDKEEAQELGLTSPMSLLRFIKFILTEIFPGGRLPRI  212 (291)
T ss_dssp             ESCGGGTTCCSSCCSTTHHHHHHHHHHHTSCTTCEEEEEEEECCCHHHHHHHTCCCCHHHHHHHHHHHHHTCTTCCCCCH
T ss_pred             chhHHhcchhhhhhHHHHHHHHHHHHHHhCCCCCceEEEEEeccCcchhhhccCCCchhhcccchHHHHHhcCCCCCCCH
Confidence            9999999763      22467999999999999999986443211                                013


Q ss_pred             HHHHHHHHHcCceeeEEEEe
Q 046488          436 NDYLEVFKMLKYKKHKWVVV  455 (480)
Q Consensus       436 ~~~~~~l~~lGfkkl~W~~~  455 (480)
                      ..+...++..||+...|...
T Consensus       213 ~~~~~~~e~~gl~v~~~~~~  232 (291)
T d1kpia_         213 SQVDYYSSNAGWKVERYHRI  232 (291)
T ss_dssp             HHHHHHHHHHTCEEEEEEEC
T ss_pred             HHHHhhhcccccccceeeec
Confidence            45667788889988777654

>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein ECA1738
species: Erwinia carotovora [TaxId: 554]

Probab=99.53  E-value=1.4e-14  Score=134.67  Aligned_cols=105  Identities=17%  Similarity=0.114  Sum_probs=79.5

Q ss_pred             hhHHHhcCCCCCCCCeEEEECCCCcHHHHHHhhCCCEEEEEecCCChhHHHHHHHhC---CCCeeeecccCCCCCCCccc
Q 046488          313 FLIPEVLDIKPGEIRIGLDFSIGTGTFAARMREFNVTLVSAIINLGAPFNEMIALRG---LVPLYITINQRVPFFDNTLD  389 (480)
Q Consensus       313 ~~I~~vL~l~~g~iR~VLDVGCGtG~fAa~Lae~gV~Vv~vd~d~~~~~~~~iA~rg---lip~~~~~ae~LPFpd~SFD  389 (480)
                      +.+........+  .+|||||||+|.++..|+++|..+++++++   +.....|+++   .+....+..+.+++ +++||
T Consensus        10 ~~~~~~~~~~~~--~~VLDiGcG~G~~~~~l~~~g~~v~giD~s---~~~i~~a~~~~~~~~~~~~~~~~~~~~-~~~fD   83 (225)
T d2p7ia1          10 FMVRAFTPFFRP--GNLLELGSFKGDFTSRLQEHFNDITCVEAS---EEAISHAQGRLKDGITYIHSRFEDAQL-PRRYD   83 (225)
T ss_dssp             HHHHHHGGGCCS--SCEEEESCTTSHHHHHHTTTCSCEEEEESC---HHHHHHHHHHSCSCEEEEESCGGGCCC-SSCEE
T ss_pred             HHHHHhhhhCCC--CcEEEEeCCCcHHHHHHHHcCCeEEEEeCc---HHHhhhhhccccccccccccccccccc-ccccc
Confidence            334444443333  269999999999999999999999999876   3333344332   24455566777775 68999


Q ss_pred             hheecccccCccChhcHHHHHHHHH-hcccCCcEEEEe
Q 046488          390 LIHTTRFLDGWIDFVLLDFILYDWD-RVLRPGGLLWID  426 (480)
Q Consensus       390 lV~ss~vL~h~~d~~~l~~~L~EI~-RVLKPGG~fiI~  426 (480)
                      +|+|..+|+|+.++.   .+|.|+. |+|||||++++.
T Consensus        84 ~I~~~~vleh~~d~~---~~l~~i~~~~Lk~gG~l~i~  118 (225)
T d2p7ia1          84 NIVLTHVLEHIDDPV---ALLKRINDDWLAEGGRLFLV  118 (225)
T ss_dssp             EEEEESCGGGCSSHH---HHHHHHHHTTEEEEEEEEEE
T ss_pred             cccccceeEecCCHH---HHHHHHHHHhcCCCceEEEE
Confidence            999999999998774   6899997 899999999986

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.53  E-value=1e-14  Score=135.60  Aligned_cols=99  Identities=19%  Similarity=0.178  Sum_probs=75.0

Q ss_pred             CCCCeEEEECCCCcHHHHHHhhCCCEEEEEecCCChhHHH----HHHHhC-CCCeeeecccCCCCCCCccchheecc-cc
Q 046488          324 GEIRIGLDFSIGTGTFAARMREFNVTLVSAIINLGAPFNE----MIALRG-LVPLYITINQRVPFFDNTLDLIHTTR-FL  397 (480)
Q Consensus       324 g~iR~VLDVGCGtG~fAa~Lae~gV~Vv~vd~d~~~~~~~----~iA~rg-lip~~~~~ae~LPFpd~SFDlV~ss~-vL  397 (480)
                      ...++|||||||||.++..|+++|..+++++++.  .+..    .....+ .+.+..++++.++++ ++||+|+|.. ++
T Consensus        40 ~~~~~iLDiGcGtG~~~~~l~~~~~~v~gvD~s~--~mi~~a~~~~~~~~~~i~~~~~d~~~l~~~-~~fD~I~~~~~~~  116 (251)
T d1wzna1          40 REVRRVLDLACGTGIPTLELAERGYEVVGLDLHE--EMLRVARRKAKERNLKIEFLQGDVLEIAFK-NEFDAVTMFFSTI  116 (251)
T ss_dssp             SCCCEEEEETCTTCHHHHHHHHTTCEEEEEESCH--HHHHHHHHHHHHTTCCCEEEESCGGGCCCC-SCEEEEEECSSGG
T ss_pred             CCCCEEEEeCCCCCccchhhcccceEEEEEeecc--ccccccccccccccccchheehhhhhcccc-cccchHhhhhhhh
Confidence            3345899999999999999999999999998763  3322    222223 245667779999987 5899999974 55


Q ss_pred             cCccChhcHHHHHHHHHhcccCCcEEEEe
Q 046488          398 DGWIDFVLLDFILYDWDRVLRPGGLLWID  426 (480)
Q Consensus       398 ~h~~d~~~l~~~L~EI~RVLKPGG~fiI~  426 (480)
                      +|+. ...+..+|.+++|+|||||+|+++
T Consensus       117 ~~~~-~~~~~~~L~~~~~~LkpgG~lii~  144 (251)
T d1wzna1         117 MYFD-EEDLRKLFSKVAEALKPGGVFITD  144 (251)
T ss_dssp             GGSC-HHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             hcCC-hHHHHHHHHHHHHHcCCCcEEEEE
Confidence            5553 334478999999999999999874

>d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810)
species: Leishmania major [TaxId: 5664]

Probab=99.52  E-value=3.4e-14  Score=135.68  Aligned_cols=128  Identities=15%  Similarity=0.056  Sum_probs=93.0

Q ss_pred             CCCCeEEEECCCCcHHHHHHhhC-CCEEEEEecCCChhHHHHHHHh----CCCCeeeecccCCCCCCCccchheeccccc
Q 046488          324 GEIRIGLDFSIGTGTFAARMREF-NVTLVSAIINLGAPFNEMIALR----GLVPLYITINQRVPFFDNTLDLIHTTRFLD  398 (480)
Q Consensus       324 g~iR~VLDVGCGtG~fAa~Lae~-gV~Vv~vd~d~~~~~~~~iA~r----glip~~~~~ae~LPFpd~SFDlV~ss~vL~  398 (480)
                      ....+|||+|||+|.++..|+.+ .-.|.+++++  ..+.+.+..+    +.+.++.+..+.+++++++||+|++..+++
T Consensus        92 ~~~~~vLD~GcG~G~~t~~ll~~~~~~v~~vD~s--~~~l~~a~~~~~~~~~~~~~~~d~~~~~~~~~~fD~I~~~~vl~  169 (254)
T d1xtpa_          92 HGTSRALDCGAGIGRITKNLLTKLYATTDLLEPV--KHMLEEAKRELAGMPVGKFILASMETATLPPNTYDLIVIQWTAI  169 (254)
T ss_dssp             CCCSEEEEETCTTTHHHHHTHHHHCSEEEEEESC--HHHHHHHHHHTTTSSEEEEEESCGGGCCCCSSCEEEEEEESCGG
T ss_pred             CCCCeEEEecccCChhhHHHHhhcCceEEEEcCC--HHHHHhhhccccccccceeEEccccccccCCCccceEEeecccc
Confidence            34458999999999999988765 4467777765  2343332222    123345667889999999999999999999


Q ss_pred             CccChhcHHHHHHHHHhcccCCcEEEEeeccCCh-------h------hHHHHHHHHHHcCceeeEEEE
Q 046488          399 GWIDFVLLDFILYDWDRVLRPGGLLWIDSFFCAK-------E------DMNDYLEVFKMLKYKKHKWVV  454 (480)
Q Consensus       399 h~~d~~~l~~~L~EI~RVLKPGG~fiI~~f~~~~-------e------dL~~~~~~l~~lGfkkl~W~~  454 (480)
                      |+.+++ +..+|.++.|+|||||+++|.......       .      ..+.+.+++++.||+.+.-..
T Consensus       170 hl~d~d-~~~~l~~~~~~LkpgG~iii~e~~~~~~~~~~d~~d~~~~rs~~~~~~l~~~aGf~ii~~~~  237 (254)
T d1xtpa_         170 YLTDAD-FVKFFKHCQQALTPNGYIFFKENCSTGDRFLVDKEDSSLTRSDIHYKRLFNESGVRVVKEAF  237 (254)
T ss_dssp             GSCHHH-HHHHHHHHHHHEEEEEEEEEEEEBC--CCEEEETTTTEEEBCHHHHHHHHHHHTCCEEEEEE
T ss_pred             ccchhh-hHHHHHHHHHhcCCCcEEEEEecCCCCCcceecccCCceeCCHHHHHHHHHHcCCEEEEEEe
Confidence            997764 367999999999999999986432211       1      135688999999998776443

>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=99.49  E-value=9e-14  Score=128.63  Aligned_cols=102  Identities=16%  Similarity=0.070  Sum_probs=73.0

Q ss_pred             CCCCCCCeEEEECCCCcHHHHHHhh----CCCEEEEEecCCChhHHHHHHH----hCC-CCeeeecccCCCCCCCccchh
Q 046488          321 IKPGEIRIGLDFSIGTGTFAARMRE----FNVTLVSAIINLGAPFNEMIAL----RGL-VPLYITINQRVPFFDNTLDLI  391 (480)
Q Consensus       321 l~~g~iR~VLDVGCGtG~fAa~Lae----~gV~Vv~vd~d~~~~~~~~iA~----rgl-ip~~~~~ae~LPFpd~SFDlV  391 (480)
                      ++++  .+|||+|||||..+..|++    .+..++++|++  .++.+.+.+    .+. .........-.+++.+.||+|
T Consensus        37 ~~~~--~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S--~~ml~~A~~~~~~~~~~~~~~~~~~d~~~~~~~~~d~i  112 (225)
T d1im8a_          37 VTAD--SNVYDLGCSRGAATLSARRNINQPNVKIIGIDNS--QPMVERCRQHIAAYHSEIPVEILCNDIRHVEIKNASMV  112 (225)
T ss_dssp             CCTT--CEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSC--HHHHHHHHHHHHTSCCSSCEEEECSCTTTCCCCSEEEE
T ss_pred             cCCC--CEEEEeccchhhHHHHHHHhhcCCCCceEEeCCC--HHHHHHHHHHhHhhcccchhhhccchhhccccccceee
Confidence            3444  3899999999999998886    37788888765  344333221    122 223333345566777889999


Q ss_pred             eecccccCccChhcHHHHHHHHHhcccCCcEEEEee
Q 046488          392 HTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDS  427 (480)
Q Consensus       392 ~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~  427 (480)
                      +|+.+++++...+ ...+|++++|+|||||.|++.+
T Consensus       113 ~~~~~l~~~~~~d-~~~~l~~i~~~LkpgG~li~~~  147 (225)
T d1im8a_         113 ILNFTLQFLPPED-RIALLTKIYEGLNPNGVLVLSE  147 (225)
T ss_dssp             EEESCGGGSCGGG-HHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEeeeccccChhh-HHHHHHHHHHhCCCCceeeccc
Confidence            9999998775333 3689999999999999999874

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.48  E-value=5.4e-14  Score=127.94  Aligned_cols=101  Identities=18%  Similarity=0.157  Sum_probs=76.6

Q ss_pred             CCCCCCCeEEEECCCCcHHHHHHhhCCCEEEEEecCCChhHHHH---HHHhCCCC---eeeecccCCCCCCCccchheec
Q 046488          321 IKPGEIRIGLDFSIGTGTFAARMREFNVTLVSAIINLGAPFNEM---IALRGLVP---LYITINQRVPFFDNTLDLIHTT  394 (480)
Q Consensus       321 l~~g~iR~VLDVGCGtG~fAa~Lae~gV~Vv~vd~d~~~~~~~~---iA~rglip---~~~~~ae~LPFpd~SFDlV~ss  394 (480)
                      +.+|   +|||||||+|.++..|+++|..+++++++.  .+.+.   .+.+..++   +...+...+++ +++||+|+|.
T Consensus        29 ~~~g---rvLDiGcG~G~~~~~la~~g~~v~gvD~s~--~~l~~a~~~~~~~~~~~~~~~~~d~~~~~~-~~~fD~I~~~  102 (198)
T d2i6ga1          29 VAPG---RTLDLGCGNGRNSLYLAANGYDVTAWDKNP--ASMANLERIKAAEGLDNLQTDLVDLNTLTF-DGEYDFILST  102 (198)
T ss_dssp             SCSC---EEEEETCTTSHHHHHHHHTTCEEEEEESCH--HHHHHHHHHHHHTTCTTEEEEECCTTTCCC-CCCEEEEEEE
T ss_pred             CCCC---cEEEECCCCCHHHHHHHHHhhhhccccCcH--HHHHHHHHHhhhccccchhhhheecccccc-cccccEEEEe
Confidence            4454   799999999999999999999999988763  33221   22333333   34455666765 7899999999


Q ss_pred             ccccCccChhcHHHHHHHHHhcccCCcEEEEeec
Q 046488          395 RFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDSF  428 (480)
Q Consensus       395 ~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~f  428 (480)
                      .+++|+++.. +..++.++.|+|||||++++..+
T Consensus       103 ~~~~~~~~~~-~~~~l~~~~~~L~pgG~~~~~~~  135 (198)
T d2i6ga1         103 VVMMFLEAQT-IPGLIANMQRCTKPGGYNLIVAA  135 (198)
T ss_dssp             SCGGGSCTTH-HHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             eeeecCCHHH-HHHHHHHHHHHcCCCcEEEEEEe
Confidence            9999886543 47899999999999999988643

>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

Probab=99.48  E-value=2.8e-13  Score=128.38  Aligned_cols=128  Identities=20%  Similarity=0.105  Sum_probs=87.4

Q ss_pred             CCCCeEEEECCCCcHHHHHHhhC--CCEEEEEecCC-ChhHHHHHHHhCC---CCeeeecccCCCCCCCccchheecccc
Q 046488          324 GEIRIGLDFSIGTGTFAARMREF--NVTLVSAIINL-GAPFNEMIALRGL---VPLYITINQRVPFFDNTLDLIHTTRFL  397 (480)
Q Consensus       324 g~iR~VLDVGCGtG~fAa~Lae~--gV~Vv~vd~d~-~~~~~~~iA~rgl---ip~~~~~ae~LPFpd~SFDlV~ss~vL  397 (480)
                      ...++|||||||+|.++..++++  ++.++++++.. ...+...++..+.   +..+.++..  ...+.+||+|++.++|
T Consensus        79 ~~~~~VLDvGcG~G~~~~~la~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~rv~~~~~D~~--~~~~~~~D~v~~~~vl  156 (253)
T d1tw3a2          79 TNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEMAGTVDTARSYLKDEGLSDRVDVVEGDFF--EPLPRKADAIILSFVL  156 (253)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECTTHHHHHHHHHHHTTCTTTEEEEECCTT--SCCSSCEEEEEEESCG
T ss_pred             ccCCEEEEeCCCCCHHHHHHHHhcceeEEEEccCHHHHHHHHHHHHHhhcccchhhccccch--hhcccchhheeecccc
Confidence            34568999999999999999987  56777766421 1122233444443   233334322  2234679999999999


Q ss_pred             cCccChhcHHHHHHHHHhcccCCcEEEEeeccCChh-----------------------hHHHHHHHHHHcCceeeEEEE
Q 046488          398 DGWIDFVLLDFILYDWDRVLRPGGLLWIDSFFCAKE-----------------------DMNDYLEVFKMLKYKKHKWVV  454 (480)
Q Consensus       398 ~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~f~~~~e-----------------------dL~~~~~~l~~lGfkkl~W~~  454 (480)
                      +||.+.+. ..+|++++|+|||||+++|.++....+                       ..++|.+++++.||+......
T Consensus       157 h~~~d~~~-~~~L~~~~~~LkPGG~l~i~e~~~~~~~~~~~~~~~~dl~~~~~~~g~~rt~~e~~~ll~~AGf~~~~v~~  235 (253)
T d1tw3a2         157 LNWPDHDA-VRILTRCAEALEPGGRILIHERDDLHENSFNEQFTELDLRMLVFLGGALRTREKWDGLAASAGLVVEEVRQ  235 (253)
T ss_dssp             GGSCHHHH-HHHHHHHHHTEEEEEEEEEEECCBCGGGCCSHHHHHHHHHHHHHHSCCCCBHHHHHHHHHHTTEEEEEEEE
T ss_pred             ccCCchhh-HHHHHHHHHhcCCCcEEEEEeccCCCCCcchhHHHHhhHHHHhhCCCcCCCHHHHHHHHHHCCCeEEEEEE
Confidence            99976643 568999999999999999875322111                       124577899999998776544

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=99.47  E-value=3.8e-14  Score=132.43  Aligned_cols=98  Identities=17%  Similarity=0.128  Sum_probs=75.4

Q ss_pred             CCeEEEECCCCcHHHHHHhhCCCEEEEEecCCChhHHHH----HHHhC-CCCeeeecccCCCCCCCccchheec-ccccC
Q 046488          326 IRIGLDFSIGTGTFAARMREFNVTLVSAIINLGAPFNEM----IALRG-LVPLYITINQRVPFFDNTLDLIHTT-RFLDG  399 (480)
Q Consensus       326 iR~VLDVGCGtG~fAa~Lae~gV~Vv~vd~d~~~~~~~~----iA~rg-lip~~~~~ae~LPFpd~SFDlV~ss-~vL~h  399 (480)
                      .++|||+|||+|.++..|+++|..++++|++  +.+...    ....+ .+.++.+++..+++ +++||+|+|. .++.|
T Consensus        38 ~~~vLDiGCG~G~~~~~l~~~g~~v~GvD~S--~~ml~~A~~~~~~~~~~v~~~~~d~~~~~~-~~~fD~i~~~~~~~~~  114 (246)
T d1y8ca_          38 FDDYLDLACGTGNLTENLCPKFKNTWAVDLS--QEMLSEAENKFRSQGLKPRLACQDISNLNI-NRKFDLITCCLDSTNY  114 (246)
T ss_dssp             TTEEEEETCTTSTTHHHHGGGSSEEEEECSC--HHHHHHHHHHHHHTTCCCEEECCCGGGCCC-SCCEEEEEECTTGGGG
T ss_pred             CCeEEEEeCcCCHHHHHHHHhCCccEeeccc--hhhhhhccccccccCccceeeccchhhhcc-cccccccceeeeeeec
Confidence            3589999999999999999999999998865  233322    22222 24455667777776 5799999986 56777


Q ss_pred             ccChhcHHHHHHHHHhcccCCcEEEEe
Q 046488          400 WIDFVLLDFILYDWDRVLRPGGLLWID  426 (480)
Q Consensus       400 ~~d~~~l~~~L~EI~RVLKPGG~fiI~  426 (480)
                      +.+...+..+|++++|.|||||.|+++
T Consensus       115 ~~~~~~~~~~l~~~~~~LkpgG~~i~~  141 (246)
T d1y8ca_         115 IIDSDDLKKYFKAVSNHLKEGGVFIFD  141 (246)
T ss_dssp             CCSHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred             cCCHHHHHHHHHHHHHhCCCCeEEEEE
Confidence            777666788999999999999999874

>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase RlmA
domain: rRNA methyltransferase RlmA
species: Escherichia coli [TaxId: 562]

Probab=99.47  E-value=3.1e-14  Score=136.71  Aligned_cols=91  Identities=20%  Similarity=0.296  Sum_probs=71.8

Q ss_pred             CCCCeEEEECCCCcHHHHHHhhC--CCEEEEEecCCChhHHHHHHHhC--CCCeeeecccCCCCCCCccchheecccccC
Q 046488          324 GEIRIGLDFSIGTGTFAARMREF--NVTLVSAIINLGAPFNEMIALRG--LVPLYITINQRVPFFDNTLDLIHTTRFLDG  399 (480)
Q Consensus       324 g~iR~VLDVGCGtG~fAa~Lae~--gV~Vv~vd~d~~~~~~~~iA~rg--lip~~~~~ae~LPFpd~SFDlV~ss~vL~h  399 (480)
                      ....+|||||||+|.++..|++.  ++.++++|++  ..+. +.|.++  .+.+.+++++.+||++++||+|++.+++++
T Consensus        83 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~~~giD~s--~~~~-~~a~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~  159 (268)
T d1p91a_          83 DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVS--KVAI-KAAAKRYPQVTFCVASSHRLPFSDTSMDAIIRIYAPCK  159 (268)
T ss_dssp             TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESC--HHHH-HHHHHHCTTSEEEECCTTSCSBCTTCEEEEEEESCCCC
T ss_pred             CCCCEEEEeCCCCcHHHHHHHHHCCCCEEEEecch--Hhhh-hhhhcccccccceeeehhhccCCCCCEEEEeecCCHHH
Confidence            33458999999999999999987  6788888765  2343 344433  355667889999999999999998776543


Q ss_pred             ccChhcHHHHHHHHHhcccCCcEEEEee
Q 046488          400 WIDFVLLDFILYDWDRVLRPGGLLWIDS  427 (480)
Q Consensus       400 ~~d~~~l~~~L~EI~RVLKPGG~fiI~~  427 (480)
                                +.|+.|||||||++++..
T Consensus       160 ----------~~e~~rvLkpgG~l~~~~  177 (268)
T d1p91a_         160 ----------AEELARVVKPGGWVITAT  177 (268)
T ss_dssp             ----------HHHHHHHEEEEEEEEEEE
T ss_pred             ----------HHHHHHHhCCCcEEEEEe
Confidence                      679999999999999874

>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Methoxy mycolic acid synthase 4, Mma4
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.46  E-value=1.4e-13  Score=133.98  Aligned_cols=108  Identities=19%  Similarity=0.193  Sum_probs=76.7

Q ss_pred             HhcCCCCCCCCeEEEECCCCcHHHHHHhhC-CCEEEEEecCCChh--HHHHHHHhCCCCeeeecccCCCCCCCccchhee
Q 046488          317 EVLDIKPGEIRIGLDFSIGTGTFAARMREF-NVTLVSAIINLGAP--FNEMIALRGLVPLYITINQRVPFFDNTLDLIHT  393 (480)
Q Consensus       317 ~vL~l~~g~iR~VLDVGCGtG~fAa~Lae~-gV~Vv~vd~d~~~~--~~~~iA~rglip~~~~~ae~LPFpd~SFDlV~s  393 (480)
                      +.|.+++|.  +|||||||+|.++.+++++ |..|++++++....  +.+.++..++...+..........+++||.|++
T Consensus        46 ~~l~l~~g~--~VLDiGCG~G~~a~~~a~~~g~~v~gi~ls~~q~~~a~~~~~~~~l~~~~~~~~~d~~~~~~~fD~i~s  123 (280)
T d2fk8a1          46 DKLDLKPGM--TLLDIGCGWGTTMRRAVERFDVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDFAEPVDRIVS  123 (280)
T ss_dssp             TTSCCCTTC--EEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGCCCCCSEEEE
T ss_pred             HHcCCCCCC--EEEEecCCchHHHHHHHHhCceeEEEecchHHHHHHHHHHHHhhccccchhhhhhhhhhhccchhhhhH
Confidence            445677775  8999999999999999876 99999988763211  112222233322222222233334689999999


Q ss_pred             cccccCccChhcHHHHHHHHHhcccCCcEEEEee
Q 046488          394 TRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDS  427 (480)
Q Consensus       394 s~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~  427 (480)
                      ..+++|+.+.. +..+|++++|+|||||++++..
T Consensus       124 i~~~eh~~~~~-~~~~f~~i~~~LkpgG~~~i~~  156 (280)
T d2fk8a1         124 IEAFEHFGHEN-YDDFFKRCFNIMPADGRMTVQS  156 (280)
T ss_dssp             ESCGGGTCGGG-HHHHHHHHHHHSCTTCEEEEEE
T ss_pred             hhHHHHhhhhh-HHHHHHHHHhccCCCceEEEEE
Confidence            99999987653 4679999999999999999853

>d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA1
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.45  E-value=1.9e-13  Score=133.65  Aligned_cols=135  Identities=16%  Similarity=0.145  Sum_probs=92.4

Q ss_pred             HhcCCCCCCCCeEEEECCCCcHHHHHHhhC-CCEEEEEecCCChh--HHHHHHHhCCCCeeeecccCCCCCCCccchhee
Q 046488          317 EVLDIKPGEIRIGLDFSIGTGTFAARMREF-NVTLVSAIINLGAP--FNEMIALRGLVPLYITINQRVPFFDNTLDLIHT  393 (480)
Q Consensus       317 ~vL~l~~g~iR~VLDVGCGtG~fAa~Lae~-gV~Vv~vd~d~~~~--~~~~iA~rglip~~~~~ae~LPFpd~SFDlV~s  393 (480)
                      +.+++++|.  +|||||||.|.++.++++. |+.|++++++..+.  +.+.++..|+...+.-........+++||.|++
T Consensus        56 ~~l~l~~G~--~VLDiGCG~G~~a~~~a~~~g~~v~git~s~~Q~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~fD~i~s  133 (285)
T d1kpga_          56 GKLGLQPGM--TLLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFDEPVDRIVS  133 (285)
T ss_dssp             TTTTCCTTC--EEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCCCCCSEEEE
T ss_pred             HHcCCCCCC--EEEEecCcchHHHHHHHhcCCcceEEEeccHHHHHHHHHHHHhhhhhhhhHHHHhhhhcccccccceee
Confidence            455677775  8999999999999998875 99999998763211  222334444443222122223333579999999


Q ss_pred             cccccCccChhcHHHHHHHHHhcccCCcEEEEeeccCCh--------------------------------hhHHHHHHH
Q 046488          394 TRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDSFFCAK--------------------------------EDMNDYLEV  441 (480)
Q Consensus       394 s~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~f~~~~--------------------------------edL~~~~~~  441 (480)
                      ..++.|+.... ...+++++.|+|||||++++..+....                                ..+..+...
T Consensus       134 i~~~eh~~~~~-~~~~~~~~~r~LkpgG~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~fi~kyiFpgg~lPsl~~~~~~  212 (285)
T d1kpga_         134 IGAFEHFGHER-YDAFFSLAHRLLPADGVMLLHTITGLHPKEIHERGLPMSFTFARFLKFIVTEIFPGGRLPSIPMVQEC  212 (285)
T ss_dssp             ESCGGGTCTTT-HHHHHHHHHHHSCTTCEEEEEEEEECCHHHHTTTTCSCHHHHHHHHHHHHHHTSTTCCCCCHHHHHHH
T ss_pred             ehhhhhcCchh-HHHHHHHHHhhcCCCCcEEEEEEeccCchhhccccCCcchhhhchhhHHHHHhccCCCCCChhhHHHH
Confidence            99999986543 257999999999999999986433110                                012345567


Q ss_pred             HHHcCceeeEEEE
Q 046488          442 FKMLKYKKHKWVV  454 (480)
Q Consensus       442 l~~lGfkkl~W~~  454 (480)
                      ++..||+...|..
T Consensus       213 ~e~agf~v~~~~~  225 (285)
T d1kpga_         213 ASANGFTVTRVQS  225 (285)
T ss_dssp             HHTTTCEEEEEEE
T ss_pred             HHHhchhhccccc
Confidence            8888998777654

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=99.45  E-value=6.7e-14  Score=123.53  Aligned_cols=106  Identities=8%  Similarity=-0.060  Sum_probs=76.7

Q ss_pred             HhcCCCCCCCCeEEEECCCCcHHHHHHhhCCCEEEEEecCCChhHHHHHHHh-CC-----------------CCeeeecc
Q 046488          317 EVLDIKPGEIRIGLDFSIGTGTFAARMREFNVTLVSAIINLGAPFNEMIALR-GL-----------------VPLYITIN  378 (480)
Q Consensus       317 ~vL~l~~g~iR~VLDVGCGtG~fAa~Lae~gV~Vv~vd~d~~~~~~~~iA~r-gl-----------------ip~~~~~a  378 (480)
                      ..|.+.++.  +|||+|||+|..+..|+++|..|+++|++.  .+...+..+ +.                 ..+..+..
T Consensus        14 ~~l~~~~~~--rvLd~GCG~G~~a~~la~~G~~V~gvD~S~--~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~   89 (201)
T d1pjza_          14 SSLNVVPGA--RVLVPLCGKSQDMSWLSGQGYHVVGAELSE--AAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDF   89 (201)
T ss_dssp             HHHCCCTTC--EEEETTTCCSHHHHHHHHHCCEEEEEEECH--HHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECC
T ss_pred             HHcCCCCCC--EEEEecCcCCHHHHHHHHcCCceEeecccH--HHHHHHHHHhccccchhhhhhhhhccccccceecccc
Confidence            345666664  899999999999999999999999998763  333332221 11                 11233444


Q ss_pred             cCCC-CCCCccchheecccccCccChhcHHHHHHHHHhcccCCcEEEEee
Q 046488          379 QRVP-FFDNTLDLIHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDS  427 (480)
Q Consensus       379 e~LP-Fpd~SFDlV~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~  427 (480)
                      ..++ +...+||+|++..+++++.+.. ...++.++.|+|||||++++..
T Consensus        90 ~~l~~~~~~~~D~i~~~~~l~~l~~~~-~~~~~~~i~~~LkpgG~l~l~~  138 (201)
T d1pjza_          90 FALTARDIGHCAAFYDRAAMIALPADM-RERYVQHLEALMPQACSGLLIT  138 (201)
T ss_dssp             SSSTHHHHHSEEEEEEESCGGGSCHHH-HHHHHHHHHHHSCSEEEEEEEE
T ss_pred             cccccccccceeEEEEEeeeEecchhh-hHHHHHHHHHhcCCCcEEEEEE
Confidence            4444 4467899999999998876533 3679999999999999987753

>d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Indolethylamine N-methyltransferase, INMT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=1.4e-13  Score=128.19  Aligned_cols=127  Identities=10%  Similarity=-0.017  Sum_probs=87.2

Q ss_pred             CCeEEEECCCCcHHHHHHhhCCC-EEEEEecCCChhHHHHHHHh----CCCCe---------------------------
Q 046488          326 IRIGLDFSIGTGTFAARMREFNV-TLVSAIINLGAPFNEMIALR----GLVPL---------------------------  373 (480)
Q Consensus       326 iR~VLDVGCGtG~fAa~Lae~gV-~Vv~vd~d~~~~~~~~iA~r----glip~---------------------------  373 (480)
                      ..+|||||||+|.++..++..+. .++++|++.  .+.. .|.+    .....                           
T Consensus        52 g~~vLDlGcG~G~~~~~~~~~~~~~v~giD~S~--~~i~-~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (257)
T d2a14a1          52 GDTLIDIGSGPTIYQVLAACDSFQDITLSDFTD--RNRE-ELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLR  128 (257)
T ss_dssp             EEEEEESSCTTCCGGGTTGGGTEEEEEEEESCH--HHHH-HHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred             CCEEEEECCCCCHhHHHHhccccCcEEEecCCH--HHHH-HHHHHHhhccccchhhhHHHHHHHhccccchHHHHHHHHh
Confidence            45899999999999888877654 578887652  2222 2211    11000                           


Q ss_pred             -----ee-----ecccCCCCCCCccchheecccccCccC-hhcHHHHHHHHHhcccCCcEEEEeeccCCh----------
Q 046488          374 -----YI-----TINQRVPFFDNTLDLIHTTRFLDGWID-FVLLDFILYDWDRVLRPGGLLWIDSFFCAK----------  432 (480)
Q Consensus       374 -----~~-----~~ae~LPFpd~SFDlV~ss~vL~h~~d-~~~l~~~L~EI~RVLKPGG~fiI~~f~~~~----------  432 (480)
                           ..     ......|+++++||+|++..+++|+.. .+....++.++.|+|||||+|++..+....          
T Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~~~~~~~~~~l~~i~~~LkpGG~li~~~~~~~~~~~~~~~~~~  208 (257)
T d2a14a1         129 AAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRLPSYMVGKREFS  208 (257)
T ss_dssp             HHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEEETTEEEE
T ss_pred             hhhhcccccccccccccccccCCcccEEeehhhHHHhcccHHHHHHHHHHHHhccCCCcEEEEEEecccccceecccccc
Confidence                 00     012235788999999999999998853 233467999999999999999997543221          


Q ss_pred             ---hhHHHHHHHHHHcCceeeEEEEe
Q 046488          433 ---EDMNDYLEVFKMLKYKKHKWVVV  455 (480)
Q Consensus       433 ---edL~~~~~~l~~lGfkkl~W~~~  455 (480)
                         -..+.+.++++.+||..+.....
T Consensus       209 ~~~~~~~~~~~~l~~aGf~v~~~~~~  234 (257)
T d2a14a1         209 CVALEKGEVEQAVLDAGFDIEQLLHS  234 (257)
T ss_dssp             CCCCCHHHHHHHHHHTTEEEEEEEEE
T ss_pred             ccCCCHHHHHHHHHHCCCEEEEEEEe
Confidence               12467888999999997776544

>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: BC2162-like
domain: Methyltransferase BC2162
species: Bacillus cereus [TaxId: 1396]

Probab=99.39  E-value=3.5e-13  Score=129.91  Aligned_cols=95  Identities=9%  Similarity=-0.028  Sum_probs=72.3

Q ss_pred             CCeEEEECCCCcHHHHHHhhC---CCEEEEEecCCChhHHHHH---HHhCC--CCeeeecccCCCCCCCccchheecccc
Q 046488          326 IRIGLDFSIGTGTFAARMREF---NVTLVSAIINLGAPFNEMI---ALRGL--VPLYITINQRVPFFDNTLDLIHTTRFL  397 (480)
Q Consensus       326 iR~VLDVGCGtG~fAa~Lae~---gV~Vv~vd~d~~~~~~~~i---A~rgl--ip~~~~~ae~LPFpd~SFDlV~ss~vL  397 (480)
                      ..+|||+|||+|.++..|++.   +..++++|++.  .+...+   .....  +.+..++++.+|++ ++||+|+|..++
T Consensus        28 ~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~--~~l~~a~~~~~~~~~~~~f~~~d~~~~~~~-~~fD~v~~~~~l  104 (281)
T d2gh1a1          28 PVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGE--TLLAEARELFRLLPYDSEFLEGDATEIELN-DKYDIAICHAFL  104 (281)
T ss_dssp             CCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCH--HHHHHHHHHHHSSSSEEEEEESCTTTCCCS-SCEEEEEEESCG
T ss_pred             cCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecch--hHhhhhhccccccccccccccccccccccc-CCceEEEEehhh
Confidence            358999999999999999874   56788887652  332222   11222  23445668888885 579999999999


Q ss_pred             cCccChhcHHHHHHHHHhcccCCcEEEEe
Q 046488          398 DGWIDFVLLDFILYDWDRVLRPGGLLWID  426 (480)
Q Consensus       398 ~h~~d~~~l~~~L~EI~RVLKPGG~fiI~  426 (480)
                      +|+.++.   .+|.++.|+|||||++++.
T Consensus       105 ~~~~d~~---~~l~~~~~~LkpgG~lii~  130 (281)
T d2gh1a1         105 LHMTTPE---TMLQKMIHSVKKGGKIICF  130 (281)
T ss_dssp             GGCSSHH---HHHHHHHHTEEEEEEEEEE
T ss_pred             hcCCCHH---HHHHHHHHHcCcCcEEEEE
Confidence            9998774   6999999999999998875

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=3.7e-13  Score=125.38  Aligned_cols=110  Identities=11%  Similarity=-0.107  Sum_probs=80.9

Q ss_pred             hHHHhcCCCCCCCCeEEEECCCCcHHHHHHhhCCCEEEEEecCCChhHHHHHHHhCC-----------------------
Q 046488          314 LIPEVLDIKPGEIRIGLDFSIGTGTFAARMREFNVTLVSAIINLGAPFNEMIALRGL-----------------------  370 (480)
Q Consensus       314 ~I~~vL~l~~g~iR~VLDVGCGtG~fAa~Lae~gV~Vv~vd~d~~~~~~~~iA~rgl-----------------------  370 (480)
                      ++.+.+.+.++.  +|||+|||+|..+..|+++|..|+++|++  ..+.+++..+..                       
T Consensus        36 ~~~~~l~~~~~~--rvLd~GCG~G~~a~~LA~~G~~V~gvD~S--~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~  111 (229)
T d2bzga1          36 HLDTFLKGKSGL--RVFFPLCGKAVEMKWFADRGHSVVGVEIS--ELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGN  111 (229)
T ss_dssp             HHHHHHTTCCSC--EEEETTCTTCTHHHHHHHTTCEEEEECSC--HHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSS
T ss_pred             HHHHhcCCCCCC--EEEEeCCCCcHHHHHHHhCCCcEEEEeCC--HHHHHHHHHHhhccccccchhcccccceeeecCCc
Confidence            455666666554  89999999999999999999999998765  344444433321                       


Q ss_pred             CCeeeecccCC-CCCCCccchheecccccCccChhcHHHHHHHHHhcccCCcEEEEeec
Q 046488          371 VPLYITINQRV-PFFDNTLDLIHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDSF  428 (480)
Q Consensus       371 ip~~~~~ae~L-PFpd~SFDlV~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~f  428 (480)
                      +.++.++...+ +..+++||+|+...+++|+.... .+.++.++.|+|||||++++..+
T Consensus       112 v~~~~~d~~~l~~~~~~~fd~i~~~~~l~~~~~~~-r~~~~~~~~~~LkpgG~~~l~~~  169 (229)
T d2bzga1         112 ISLYCCSIFDLPRTNIGKFDMIWDRGALVAINPGD-RKCYADTMFSLLGKKFQYLLCVL  169 (229)
T ss_dssp             EEEEESCGGGGGGSCCCCEEEEEESSSTTTSCGGG-HHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             EEEEEcchhhccccccCceeEEEEEEEEEeccchh-hHHHHHHHHhhcCCcceEEEEEc
Confidence            11223333333 56789999999999999886544 47899999999999999887654

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

Probab=99.38  E-value=3e-13  Score=127.48  Aligned_cols=98  Identities=16%  Similarity=0.108  Sum_probs=72.4

Q ss_pred             CeEEEECCCCcHHHHHHhhCCC-EEEEEecCCChhHHHHHHH---h-CC---CCeeeecccCCCC-CCCccchheecccc
Q 046488          327 RIGLDFSIGTGTFAARMREFNV-TLVSAIINLGAPFNEMIAL---R-GL---VPLYITINQRVPF-FDNTLDLIHTTRFL  397 (480)
Q Consensus       327 R~VLDVGCGtG~fAa~Lae~gV-~Vv~vd~d~~~~~~~~iA~---r-gl---ip~~~~~ae~LPF-pd~SFDlV~ss~vL  397 (480)
                      .+|||||||+|..+..+++.+. .++++|++.  .+...+..   . +.   +.+..+++...++ .+++||+|+|..++
T Consensus        26 ~~VLDlGCG~G~~~~~~~~~~~~~v~GiD~S~--~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~~~fD~V~~~~~l  103 (252)
T d1ri5a_          26 DSVLDLGCGKGGDLLKYERAGIGEYYGVDIAE--VSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQFSF  103 (252)
T ss_dssp             CEEEEETCTTTTTHHHHHHHTCSEEEEEESCH--HHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEESCG
T ss_pred             CEEEEecccCcHHHHHHHHcCCCeEEEecCCH--HHHHHHHHHHHhcCCCcceEEEEcchhhhcccccccceEEEEccee
Confidence            3899999999999999988765 688888763  33333221   1 11   2234555656666 57799999999999


Q ss_pred             cCccC-hhcHHHHHHHHHhcccCCcEEEEe
Q 046488          398 DGWID-FVLLDFILYDWDRVLRPGGLLWID  426 (480)
Q Consensus       398 ~h~~d-~~~l~~~L~EI~RVLKPGG~fiI~  426 (480)
                      +|+.+ .+.+..++.++.|+|||||+|+++
T Consensus       104 ~~~~~~~~~~~~~l~~i~~~Lk~gG~~i~~  133 (252)
T d1ri5a_         104 HYAFSTSESLDIAQRNIARHLRPGGYFIMT  133 (252)
T ss_dssp             GGGGSSHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred             eecCCCHHHHHHHHHHHhceeCCCCEEEEE
Confidence            98753 344567999999999999999875

>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

Probab=99.36  E-value=2.2e-12  Score=123.10  Aligned_cols=127  Identities=18%  Similarity=0.086  Sum_probs=86.1

Q ss_pred             CCCeEEEECCCCcHHHHHHhhC--CCEEEEEecCC-ChhHHHHHHHhCCCC---eeeecccCCCCCCCccchheeccccc
Q 046488          325 EIRIGLDFSIGTGTFAARMREF--NVTLVSAIINL-GAPFNEMIALRGLVP---LYITINQRVPFFDNTLDLIHTTRFLD  398 (480)
Q Consensus       325 ~iR~VLDVGCGtG~fAa~Lae~--gV~Vv~vd~d~-~~~~~~~iA~rglip---~~~~~ae~LPFpd~SFDlV~ss~vL~  398 (480)
                      ..++|||||||+|.++..++++  +..++++|+.. ...+...++..+...   ...++.. -|. +..||+|++.++||
T Consensus        81 ~~~~vlDvG~G~G~~~~~l~~~~P~~~~~~~Dlp~~~~~a~~~~~~~~~~~ri~~~~~d~~-~~~-p~~~D~v~~~~vLh  158 (256)
T d1qzza2          81 AVRHVLDVGGGNGGMLAAIALRAPHLRGTLVELAGPAERARRRFADAGLADRVTVAEGDFF-KPL-PVTADVVLLSFVLL  158 (256)
T ss_dssp             TCCEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTCTTTEEEEECCTT-SCC-SCCEEEEEEESCGG
T ss_pred             cCCEEEEECCCCCHHHHHHHHhhcCcEEEEecChHHHHHHHHHHhhcCCcceeeeeeeecc-ccc-cccchhhhcccccc
Confidence            4568999999999999999987  66777776421 111223344444433   2222221 133 35699999999999


Q ss_pred             CccChhcHHHHHHHHHhcccCCcEEEEeeccCChh------------------------hHHHHHHHHHHcCceeeEEEE
Q 046488          399 GWIDFVLLDFILYDWDRVLRPGGLLWIDSFFCAKE------------------------DMNDYLEVFKMLKYKKHKWVV  454 (480)
Q Consensus       399 h~~d~~~l~~~L~EI~RVLKPGG~fiI~~f~~~~e------------------------dL~~~~~~l~~lGfkkl~W~~  454 (480)
                      +|.+... ..+|++++|+|||||+|+|.++....+                        ..++|.++++..||+.+.-..
T Consensus       159 ~~~d~~~-~~lL~~i~~~LkpgG~llI~d~~~~~~~~~~~~~~~~~d~~ml~~~~g~~rt~~e~~~ll~~AGf~~~~~~~  237 (256)
T d1qzza2         159 NWSDEDA-LTILRGCVRALEPGGRLLVLDRADVEGDGADRFFSTLLDLRMLTFMGGRVRTRDEVVDLAGSAGLALASERT  237 (256)
T ss_dssp             GSCHHHH-HHHHHHHHHHEEEEEEEEEEECCH-------HHHHHHHHHHHHHHHSCCCCCHHHHHHHHHTTTEEEEEEEE
T ss_pred             ccCcHHH-HHHHHHHHhhcCCcceeEEEEeccCCCCcccHHHHHHHHHHHHhhCCCccCCHHHHHHHHHHCCCceeEEEE
Confidence            9986543 568999999999999999875321110                        124578899999998776443

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=99.34  E-value=2.7e-12  Score=123.52  Aligned_cols=119  Identities=14%  Similarity=0.149  Sum_probs=83.1

Q ss_pred             CCCCCCCeEEEECCCCcHHHHHHhhCCCEEEEEecCCChh--HHHHHHHhCCCC--eeeecccCCCCCCCccchheeccc
Q 046488          321 IKPGEIRIGLDFSIGTGTFAARMREFNVTLVSAIINLGAP--FNEMIALRGLVP--LYITINQRVPFFDNTLDLIHTTRF  396 (480)
Q Consensus       321 l~~g~iR~VLDVGCGtG~fAa~Lae~gV~Vv~vd~d~~~~--~~~~iA~rglip--~~~~~ae~LPFpd~SFDlV~ss~v  396 (480)
                      .+++  .+|||+|||+|.++..+++.|..++++|++..+-  +...+ ++..+.  +..+.... ++++++||+|+++..
T Consensus       118 ~~~g--~~VLDiGcGsG~l~i~aa~~g~~V~gvDis~~av~~A~~na-~~n~~~~~~~~~d~~~-~~~~~~fD~V~ani~  193 (254)
T d2nxca1         118 LRPG--DKVLDLGTGSGVLAIAAEKLGGKALGVDIDPMVLPQAEANA-KRNGVRPRFLEGSLEA-ALPFGPFDLLVANLY  193 (254)
T ss_dssp             CCTT--CEEEEETCTTSHHHHHHHHTTCEEEEEESCGGGHHHHHHHH-HHTTCCCEEEESCHHH-HGGGCCEEEEEEECC
T ss_pred             cCcc--CEEEEcccchhHHHHHHHhcCCEEEEEECChHHHHHHHHHH-HHcCCceeEEeccccc-cccccccchhhhccc
Confidence            3455  3899999999999999999999999888764221  12222 233333  23333322 466789999998643


Q ss_pred             ccCccChhcHHHHHHHHHhcccCCcEEEEeeccCChhhHHHHHHHHHHcCceeeE
Q 046488          397 LDGWIDFVLLDFILYDWDRVLRPGGLLWIDSFFCAKEDMNDYLEVFKMLKYKKHK  451 (480)
Q Consensus       397 L~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~f~~~~edL~~~~~~l~~lGfkkl~  451 (480)
                      .+.      +..++.++.|+|||||+++++++...  +.+.+.+.++..||+.+.
T Consensus       194 ~~~------l~~l~~~~~~~LkpGG~lilSgil~~--~~~~v~~~~~~~Gf~~~~  240 (254)
T d2nxca1         194 AEL------HAALAPRYREALVPGGRALLTGILKD--RAPLVREAMAGAGFRPLE  240 (254)
T ss_dssp             HHH------HHHHHHHHHHHEEEEEEEEEEEEEGG--GHHHHHHHHHHTTCEEEE
T ss_pred             ccc------HHHHHHHHHHhcCCCcEEEEEecchh--hHHHHHHHHHHCCCEEEE
Confidence            321      25688999999999999999876643  345677788899987654

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.31  E-value=3.6e-12  Score=120.70  Aligned_cols=128  Identities=12%  Similarity=0.022  Sum_probs=86.8

Q ss_pred             hcCCCCCCCCeEEEECCCCcHHHHHHhhC--CCEEEEEecCCChhHHHHHHH----hCCCCeeeec-ccCCCCCCCccch
Q 046488          318 VLDIKPGEIRIGLDFSIGTGTFAARMREF--NVTLVSAIINLGAPFNEMIAL----RGLVPLYITI-NQRVPFFDNTLDL  390 (480)
Q Consensus       318 vL~l~~g~iR~VLDVGCGtG~fAa~Lae~--gV~Vv~vd~d~~~~~~~~iA~----rglip~~~~~-ae~LPFpd~SFDl  390 (480)
                      .|++++|.  +|||+|||+|.++..+++.  +-.|++++++  +.+.+++..    +..+..+..+ ....++.+..+|+
T Consensus        69 ~l~ikpG~--~VLDlGcGsG~~~~~la~~~~~g~V~aVDiS--~~~i~~a~~~a~~~~ni~~i~~d~~~~~~~~~~~~~v  144 (230)
T d1g8sa_          69 VMPIKRDS--KILYLGASAGTTPSHVADIADKGIVYAIEYA--PRIMRELLDACAERENIIPILGDANKPQEYANIVEKV  144 (230)
T ss_dssp             CCCCCTTC--EEEEESCCSSHHHHHHHHHTTTSEEEEEESC--HHHHHHHHHHTTTCTTEEEEECCTTCGGGGTTTCCCE
T ss_pred             hCCCCCCC--EEEEeCEEcCHHHHHHHHhCCCCEEEEEeCc--HHHHHHHHHHHhhhcccceEEEeeccCccccccccee
Confidence            44577775  8999999999999999986  3467777754  344443322    1223333433 4455677888888


Q ss_pred             heecccccCccChhcHHHHHHHHHhcccCCcEEEEeeccCCh-------hhHHHHHHHHHHcCceeeEE
Q 046488          391 IHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDSFFCAK-------EDMNDYLEVFKMLKYKKHKW  452 (480)
Q Consensus       391 V~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~f~~~~-------edL~~~~~~l~~lGfkkl~W  452 (480)
                      +++...++++.+.   ..++.++.|+|||||++++..+....       ...++..+.++..||+.+.-
T Consensus       145 ~~i~~~~~~~~~~---~~~l~~~~r~LKpgG~~~i~~k~~~~d~~~~~~~~~~e~~~~L~~aGF~ive~  210 (230)
T d1g8sa_         145 DVIYEDVAQPNQA---EILIKNAKWFLKKGGYGMIAIKARSIDVTKDPKEIFKEQKEILEAGGFKIVDE  210 (230)
T ss_dssp             EEEEECCCSTTHH---HHHHHHHHHHEEEEEEEEEEEEGGGTCSSSCHHHHHHHHHHHHHHHTEEEEEE
T ss_pred             EEeeccccchHHH---HHHHHHHHHhcccCceEEEEeeccccCCCCCHHHHHHHHHHHHHHcCCEEEEE
Confidence            8777766665444   56899999999999999887433221       11345677888899987653

>d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Phenylethanolamine N-methyltransferase, PNMTase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=6.4e-12  Score=119.79  Aligned_cols=127  Identities=13%  Similarity=0.004  Sum_probs=84.1

Q ss_pred             CCeEEEECCCCcHHHHHHhhC-CCEEEEEecCCChhHHHHHHHh-----C-CCC--------------------------
Q 046488          326 IRIGLDFSIGTGTFAARMREF-NVTLVSAIINLGAPFNEMIALR-----G-LVP--------------------------  372 (480)
Q Consensus       326 iR~VLDVGCGtG~fAa~Lae~-gV~Vv~vd~d~~~~~~~~iA~r-----g-lip--------------------------  372 (480)
                      ..+|||+|||+|.+....+.. ...++++|.+.  .+. +.+++     . .+.                          
T Consensus        55 g~~vLDiGcG~g~~~~~~~~~~~~~v~~~D~S~--~~i-~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~  131 (263)
T d2g72a1          55 GRTLIDIGSGPTVYQLLSACSHFEDITMTDFLE--VNR-QELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLR  131 (263)
T ss_dssp             CSEEEEETCTTCCGGGTTGGGGCSEEEEECSCH--HHH-HHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHH
T ss_pred             CcEEEEeccCCCHHHHHHhcccCCeEEEEeCCH--HHH-HHHHHHHhcCcccccchhhhhhhhhhccccchhhhhHHHhh
Confidence            458999999999887655544 55688877642  222 22211     1 000                          


Q ss_pred             -----eee-ec-----ccCCCCCCCccchheecccccCcc-ChhcHHHHHHHHHhcccCCcEEEEeeccC----------
Q 046488          373 -----LYI-TI-----NQRVPFFDNTLDLIHTTRFLDGWI-DFVLLDFILYDWDRVLRPGGLLWIDSFFC----------  430 (480)
Q Consensus       373 -----~~~-~~-----ae~LPFpd~SFDlV~ss~vL~h~~-d~~~l~~~L~EI~RVLKPGG~fiI~~f~~----------  430 (480)
                           ... +.     ....++++++||+|++.++++++. +.+.+..++.++.|+|||||+|++.....          
T Consensus       132 ~~~~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~~~~~LkPGG~li~~~~~~~~~~~~~~~~  211 (263)
T d2g72a1         132 ARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALEESWYLAGEAR  211 (263)
T ss_dssp             HHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEESCCEEEETTEE
T ss_pred             hhhhccccccccCCCccccCCcCcCccCeeeeHHHHHHHccCHHHHHHHHHHHHHHcCCCCEEEEecccCCcccccCCcc
Confidence                 000 11     234556778999999999999885 34446789999999999999999863211          


Q ss_pred             ---ChhhHHHHHHHHHHcCceeeEEEEe
Q 046488          431 ---AKEDMNDYLEVFKMLKYKKHKWVVV  455 (480)
Q Consensus       431 ---~~edL~~~~~~l~~lGfkkl~W~~~  455 (480)
                         ..-..+.+.+.++..||..+.....
T Consensus       212 ~~~~~~t~e~v~~~l~~aGf~v~~~~~~  239 (263)
T d2g72a1         212 LTVVPVSEEEVREALVRSGYKVRDLRTY  239 (263)
T ss_dssp             EECCCCCHHHHHHHHHHTTEEEEEEEEE
T ss_pred             cccCCCCHHHHHHHHHHCCCeEEEEEEe
Confidence               1112356888999999987765544

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.27  E-value=9.9e-12  Score=112.49  Aligned_cols=125  Identities=17%  Similarity=0.139  Sum_probs=88.1

Q ss_pred             hHHHhcCCCCCCCCeEEEECCCCcHHHHHHhhCCCEEEEEecCCC--hhHHHHHHHhCC---CCeeeecccCCCCCCCcc
Q 046488          314 LIPEVLDIKPGEIRIGLDFSIGTGTFAARMREFNVTLVSAIINLG--APFNEMIALRGL---VPLYITINQRVPFFDNTL  388 (480)
Q Consensus       314 ~I~~vL~l~~g~iR~VLDVGCGtG~fAa~Lae~gV~Vv~vd~d~~--~~~~~~iA~rgl---ip~~~~~ae~LPFpd~SF  388 (480)
                      .+-..+++.+++  +|||+|||+|.++..++..+..+++++.+..  ..+.+.++..+.   +.++.+++..+++...+|
T Consensus        24 ~il~~l~~~~g~--~VLDiGcGsG~~s~~lA~~~~~V~avD~~~~~l~~a~~n~~~~gl~~~v~~~~gda~~~~~~~~~~  101 (186)
T d1l3ia_          24 LIMCLAEPGKND--VAVDVGCGTGGVTLELAGRVRRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCKIPDI  101 (186)
T ss_dssp             HHHHHHCCCTTC--EEEEESCTTSHHHHHHHTTSSEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTTSCCE
T ss_pred             HHHHhcCCCCCC--EEEEEECCeEcccccccccceEEEEecCCHHHHHHHHHHHHHcCCCcceEEEECchhhcccccCCc
Confidence            344556777665  8999999999999999988878888886521  112222333343   334567777788888999


Q ss_pred             chheecccccCccChhcHHHHHHHHHhcccCCcEEEEeeccCChhhHHHHHHHHHHcCce
Q 046488          389 DLIHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDSFFCAKEDMNDYLEVFKMLKYK  448 (480)
Q Consensus       389 DlV~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~f~~~~edL~~~~~~l~~lGfk  448 (480)
                      |+|++.....++      ..++.++.+.|||||++++...  ..+......+.++..||.
T Consensus       102 D~v~~~~~~~~~------~~~~~~~~~~LkpgG~lvi~~~--~~e~~~~~~~~l~~~~~~  153 (186)
T d1l3ia_         102 DIAVVGGSGGEL------QEILRIIKDKLKPGGRIIVTAI--LLETKFEAMECLRDLGFD  153 (186)
T ss_dssp             EEEEESCCTTCH------HHHHHHHHHTEEEEEEEEEEEC--BHHHHHHHHHHHHHTTCC
T ss_pred             CEEEEeCccccc------hHHHHHHHHHhCcCCEEEEEee--ccccHHHHHHHHHHcCCC
Confidence            999987655432      4589999999999999887542  234445566777777763

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.25  E-value=2.1e-12  Score=124.19  Aligned_cols=108  Identities=22%  Similarity=0.194  Sum_probs=72.1

Q ss_pred             hHHHhcCCCCCCCCeEEEECCCCcHHHHHHhhCCCEEEEEecCCChhHHHHH----HHhCCCC----eeeecc------c
Q 046488          314 LIPEVLDIKPGEIRIGLDFSIGTGTFAARMREFNVTLVSAIINLGAPFNEMI----ALRGLVP----LYITIN------Q  379 (480)
Q Consensus       314 ~I~~vL~l~~g~iR~VLDVGCGtG~fAa~Lae~gV~Vv~vd~d~~~~~~~~i----A~rglip----~~~~~a------e  379 (480)
                      ++.+.|+..++  ++|||+|||+|.++..|+++|..|+++|++.  .+...+    ..++...    .....+      .
T Consensus        47 ~l~~~l~~~~~--~~vLD~GcG~G~~~~~la~~g~~v~gvD~S~--~ml~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (292)
T d1xvaa_          47 WLLGLLRQHGC--HRVLDVACGTGVDSIMLVEEGFSVTSVDASD--KMLKYALKERWNRRKEPAFDKWVIEEANWLTLDK  122 (292)
T ss_dssp             HHHHHHHHTTC--CEEEESSCTTSHHHHHHHHTTCEEEEEESCH--HHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHH
T ss_pred             HHHHHhhhcCC--CEEEEecCCCcHHHHHHHHcCCeeeeccCch--HHHHHHHHHHHhcccccccceeeeeecccccccc
Confidence            34455554433  4899999999999999999999999988762  333221    1122211    111111      2


Q ss_pred             CCCCCCCccchheec-ccccCccCh----hcHHHHHHHHHhcccCCcEEEEe
Q 046488          380 RVPFFDNTLDLIHTT-RFLDGWIDF----VLLDFILYDWDRVLRPGGLLWID  426 (480)
Q Consensus       380 ~LPFpd~SFDlV~ss-~vL~h~~d~----~~l~~~L~EI~RVLKPGG~fiI~  426 (480)
                      .+| +.++||+|+|. .++.|+.+.    ..+..+|+++.|+|||||+|+++
T Consensus       123 ~~~-~~~~fd~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~  173 (292)
T d1xvaa_         123 DVP-AGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVID  173 (292)
T ss_dssp             HSC-CTTCEEEEEECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred             ccC-CCCCceEEEEecCchhhcCCcccChHHHHHHHHHHHHHcCcCcEEEEe
Confidence            233 35689999985 477777542    23467999999999999999985

>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Histamine methyltransferase
domain: Histamine methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.23  E-value=1.3e-11  Score=117.21  Aligned_cols=119  Identities=13%  Similarity=0.002  Sum_probs=78.2

Q ss_pred             eEEEECCCCcHHHHHHhhC------C--CEEEEEecCCChhHHHHHHHh----CCCC-eeeec----c------cCCCCC
Q 046488          328 IGLDFSIGTGTFAARMREF------N--VTLVSAIINLGAPFNEMIALR----GLVP-LYITI----N------QRVPFF  384 (480)
Q Consensus       328 ~VLDVGCGtG~fAa~Lae~------g--V~Vv~vd~d~~~~~~~~iA~r----glip-~~~~~----a------e~LPFp  384 (480)
                      +|||||||+|.++..+++.      +  +.+++++++  ..+...+.++    ..++ ....+    .      ...+++
T Consensus        43 ~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s--~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  120 (280)
T d1jqea_          43 KILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPS--AEQIAKYKELVAKISNLENVKFAWHKETSSEYQSRMLEKKE  120 (280)
T ss_dssp             EEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCC--HHHHHHHHHHHTTCCSCTTEEEEEECSCHHHHHHHHTTSSS
T ss_pred             eEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCc--HHHHHHHHHHHhhccccccccccchhhhhhhhcchhcccCC
Confidence            6999999999998777542      3  345566554  3443333222    1111 11111    1      134788


Q ss_pred             CCccchheecccccCccChhcHHHHHHHHHhcccCCcEEEEeeccCCh---------------h------hHHHHHHHHH
Q 046488          385 DNTLDLIHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDSFFCAK---------------E------DMNDYLEVFK  443 (480)
Q Consensus       385 d~SFDlV~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~f~~~~---------------e------dL~~~~~~l~  443 (480)
                      +++||+|+|.++++|+.++   ..+|.+++|+|||||+++|..+....               +      ..+.+..+++
T Consensus       121 ~~~fD~I~~~~~l~~~~d~---~~~l~~l~~~LkpgG~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~  197 (280)
T d1jqea_         121 LQKWDFIHMIQMLYYVKDI---PATLKFFHSLLGTNAKMLIIVVSGSSGWDKLWKKYGSRFPQDDLCQYITSDDLTQMLD  197 (280)
T ss_dssp             CCCEEEEEEESCGGGCSCH---HHHHHHHHHTEEEEEEEEEEEECTTSHHHHHHHHHGGGSCCCTTSCCCCHHHHHHHHH
T ss_pred             CCceeEEEEccceecCCCH---HHHHHHHHhhCCCCCEEEEEEecCcchHHHHHHHHHHhcCCCcccccCCHHHHHHHHH
Confidence            9999999999999998876   46999999999999998886321110               0      1245778889


Q ss_pred             HcCceeeE
Q 046488          444 MLKYKKHK  451 (480)
Q Consensus       444 ~lGfkkl~  451 (480)
                      +.||.-..
T Consensus       198 ~~G~~~~~  205 (280)
T d1jqea_         198 NLGLKYEC  205 (280)
T ss_dssp             HHTCCEEE
T ss_pred             HCCCceEE
Confidence            98986433

>d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein MJ0882
domain: Hypothetical protein MJ0882
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.23  E-value=1.8e-11  Score=111.23  Aligned_cols=112  Identities=20%  Similarity=0.189  Sum_probs=74.7

Q ss_pred             hhhhhHHHhcCCCCCCCCeEEEECCCCcHHHHHHhhCCCEEEEEecCCChh--HHHHHHHhCC----CCeeeecccCCCC
Q 046488          310 TADFLIPEVLDIKPGEIRIGLDFSIGTGTFAARMREFNVTLVSAIINLGAP--FNEMIALRGL----VPLYITINQRVPF  383 (480)
Q Consensus       310 ~ad~~I~~vL~l~~g~iR~VLDVGCGtG~fAa~Lae~gV~Vv~vd~d~~~~--~~~~iA~rgl----ip~~~~~ae~LPF  383 (480)
                      ++..++ +.+.+.++  .+|||+|||+|.++..+++.+..+++++++..+.  +...++..+.    +.+..++... ++
T Consensus        40 ~t~lLi-~~l~~~~~--~~VLDiGcG~G~~~~~la~~~~~v~~iD~s~~~i~~a~~n~~~~~l~~~~i~~~~~d~~~-~~  115 (194)
T d1dusa_          40 GTKILV-ENVVVDKD--DDILDLGCGYGVIGIALADEVKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYE-NV  115 (194)
T ss_dssp             HHHHHH-HHCCCCTT--CEEEEETCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTT-TC
T ss_pred             HHHHHH-HhCCcCCC--CeEEEEeecCChhHHHHHhhccccceeeeccccchhHHHHHHHhCCccceEEEEEcchhh-hh
Confidence            334444 44455444  4899999999999999999888888887663111  1112222232    1223344433 66


Q ss_pred             CCCccchheecccccCccChhcHHHHHHHHHhcccCCcEEEEee
Q 046488          384 FDNTLDLIHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDS  427 (480)
Q Consensus       384 pd~SFDlV~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~  427 (480)
                      ++++||+|++...+++..+.  +..++.++.|+|||||.+++..
T Consensus       116 ~~~~fD~Ii~~~p~~~~~~~--~~~~l~~~~~~LkpgG~l~i~~  157 (194)
T d1dusa_         116 KDRKYNKIITNPPIRAGKEV--LHRIIEEGKELLKDNGEIWVVI  157 (194)
T ss_dssp             TTSCEEEEEECCCSTTCHHH--HHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ccCCceEEEEcccEEecchh--hhhHHHHHHHhcCcCcEEEEEE
Confidence            78999999998877654332  3578999999999999988753

>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Guanidinoacetate methyltransferase
domain: Guanidinoacetate methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.20  E-value=3.6e-12  Score=119.04  Aligned_cols=95  Identities=18%  Similarity=0.073  Sum_probs=64.1

Q ss_pred             CeEEEECCCCcHHHHHHhhCC-CEEEEEecCCChhHHHHHHHh---CCCC--eeeec--ccCCCCCCCccchhe-----e
Q 046488          327 RIGLDFSIGTGTFAARMREFN-VTLVSAIINLGAPFNEMIALR---GLVP--LYITI--NQRVPFFDNTLDLIH-----T  393 (480)
Q Consensus       327 R~VLDVGCGtG~fAa~Lae~g-V~Vv~vd~d~~~~~~~~iA~r---glip--~~~~~--ae~LPFpd~SFDlV~-----s  393 (480)
                      .+|||||||+|.++..+++++ ..+++++++  +.+.+.+.++   ....  .....  ....++++++||.|+     +
T Consensus        55 ~~VLdIGcG~G~~a~~~a~~~~~~v~~id~s--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~fD~~~~  132 (229)
T d1zx0a1          55 GRVLEVGFGMAIAASKVQEAPIDEHWIIECN--DGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTYPL  132 (229)
T ss_dssp             EEEEEECCTTSHHHHHHHTSCEEEEEEEECC--HHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCCCC
T ss_pred             CeEEEeeccchHHHHHHHHcCCCeEEEeCCC--HHHHHHHHHHhhhcccccccccccccccccccccccccceeeccccc
Confidence            489999999999999999874 456777665  2333322211   1111  22222  234467788888776     4


Q ss_pred             cccccCccChhcHHHHHHHHHhcccCCcEEEEe
Q 046488          394 TRFLDGWIDFVLLDFILYDWDRVLRPGGLLWID  426 (480)
Q Consensus       394 s~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~  426 (480)
                      ...+.|+.+.   ..++.|+.|+|||||+|++.
T Consensus       133 ~~~~~~~~~~---~~~~~~~~r~LkpGG~~~~~  162 (229)
T d1zx0a1         133 SEETWHTHQF---NFIKNHAFRLLKPGGVLTYC  162 (229)
T ss_dssp             BGGGTTTHHH---HHHHHTHHHHEEEEEEEEEC
T ss_pred             ccccccccCH---HHHHHHHHHHcCCCcEEEEE
Confidence            5666666555   46999999999999999875

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=99.19  E-value=4.2e-11  Score=114.99  Aligned_cols=122  Identities=11%  Similarity=0.028  Sum_probs=80.9

Q ss_pred             hHHHhcCCCCCCCCeEEEECCCCcHHHHHHhhC---CCEEEEEecCCChhHHHHHH----HhCC---CCeeeecccCCCC
Q 046488          314 LIPEVLDIKPGEIRIGLDFSIGTGTFAARMREF---NVTLVSAIINLGAPFNEMIA----LRGL---VPLYITINQRVPF  383 (480)
Q Consensus       314 ~I~~vL~l~~g~iR~VLDVGCGtG~fAa~Lae~---gV~Vv~vd~d~~~~~~~~iA----~rgl---ip~~~~~ae~LPF  383 (480)
                      +|-..+++++|.  +|||+|||+|.++..|++.   +-.+++++.+  .++.+.+.    ..+.   +.+..++.... +
T Consensus        76 ~Ii~~l~i~pG~--rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~--e~~~~~A~~n~~~~~~~~nv~~~~~Di~~~-~  150 (250)
T d1yb2a1          76 YIIMRCGLRPGM--DILEVGVGSGNMSSYILYALNGKGTLTVVERD--EDNLKKAMDNLSEFYDIGNVRTSRSDIADF-I  150 (250)
T ss_dssp             -----CCCCTTC--EEEEECCTTSHHHHHHHHHHTTSSEEEEECSC--HHHHHHHHHHHHTTSCCTTEEEECSCTTTC-C
T ss_pred             HHHHHcCCCCcC--EEEEeeeeCcHHHHHHHHHhCCCcEEEEEECC--HHHHHHHHHHHHHhcCCCceEEEEeeeecc-c
Confidence            343556788886  8999999999999999874   3467777755  23333222    1122   23344444443 5


Q ss_pred             CCCccchheecccccCccChhcHHHHHHHHHhcccCCcEEEEeeccCChhhHHHHHHHHHHcCceee
Q 046488          384 FDNTLDLIHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDSFFCAKEDMNDYLEVFKMLKYKKH  450 (480)
Q Consensus       384 pd~SFDlV~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~f~~~~edL~~~~~~l~~lGfkkl  450 (480)
                      ++++||+|++     +++++.   .++.++.|+|||||++++  |...-+++++..+.++..||..+
T Consensus       151 ~~~~fD~V~l-----d~p~p~---~~l~~~~~~LKpGG~lv~--~~P~i~Qv~~~~~~l~~~gf~~i  207 (250)
T d1yb2a1         151 SDQMYDAVIA-----DIPDPW---NHVQKIASMMKPGSVATF--YLPNFDQSEKTVLSLSASGMHHL  207 (250)
T ss_dssp             CSCCEEEEEE-----CCSCGG---GSHHHHHHTEEEEEEEEE--EESSHHHHHHHHHHSGGGTEEEE
T ss_pred             ccceeeeeee-----cCCchH---HHHHHHHHhcCCCceEEE--EeCCcChHHHHHHHHHHCCCcee
Confidence            6899999985     344553   489999999999999887  33444667777788888899765

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.18  E-value=4.2e-11  Score=115.96  Aligned_cols=121  Identities=19%  Similarity=0.198  Sum_probs=85.4

Q ss_pred             hHHHhcCCCCCCCCeEEEECCCCcHHHHHHhhC---CCEEEEEecCCChhHHHHHHHh-------CC---CCeeeecccC
Q 046488          314 LIPEVLDIKPGEIRIGLDFSIGTGTFAARMREF---NVTLVSAIINLGAPFNEMIALR-------GL---VPLYITINQR  380 (480)
Q Consensus       314 ~I~~vL~l~~g~iR~VLDVGCGtG~fAa~Lae~---gV~Vv~vd~d~~~~~~~~iA~r-------gl---ip~~~~~ae~  380 (480)
                      +|-..++++||.  +|||+|||+|.++..|+..   +-.+++++.+  .++.+. |++       +.   +.+..++...
T Consensus        87 ~Ii~~l~i~PG~--~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~--~~~~~~-Ar~n~~~~~~~~~~nv~~~~~d~~~  161 (264)
T d1i9ga_          87 QIVHEGDIFPGA--RVLEAGAGSGALTLSLLRAVGPAGQVISYEQR--ADHAEH-ARRNVSGCYGQPPDNWRLVVSDLAD  161 (264)
T ss_dssp             HHHHHTTCCTTC--EEEEECCTTSHHHHHHHHHHCTTSEEEEECSC--HHHHHH-HHHHHHHHHTSCCTTEEEECSCGGG
T ss_pred             HHHHHhCCCCCC--EEEecCcCCcHHHHHHHHhhCCCcEEEEecCC--HHHHHH-HHHhhhhhccCCCceEEEEeccccc
Confidence            555678899886  8999999999999999875   3467777765  233322 221       11   2234456777


Q ss_pred             CCCCCCccchheecccccCccChhcHHHHHHHHHhcccCCcEEEEeeccCChhhHHHHHHHHH-HcCcee
Q 046488          381 VPFFDNTLDLIHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDSFFCAKEDMNDYLEVFK-MLKYKK  449 (480)
Q Consensus       381 LPFpd~SFDlV~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~f~~~~edL~~~~~~l~-~lGfkk  449 (480)
                      .++++++||+|+.     +++++.   .++.++.|+|||||++++  |...-+++.+..+.++ ..||..
T Consensus       162 ~~~~~~~fDaV~l-----dlp~P~---~~l~~~~~~LkpGG~lv~--~~P~i~Qv~~~~~~l~~~~~f~~  221 (264)
T d1i9ga_         162 SELPDGSVDRAVL-----DMLAPW---EVLDAVSRLLVAGGVLMV--YVATVTQLSRIVEALRAKQCWTE  221 (264)
T ss_dssp             CCCCTTCEEEEEE-----ESSCGG---GGHHHHHHHEEEEEEEEE--EESSHHHHHHHHHHHHHHSSBCC
T ss_pred             ccccCCCcceEEE-----ecCCHH---HHHHHHHhccCCCCEEEE--EeCccChHHHHHHHHHHcCCeec
Confidence            8999999999975     456664   489999999999999876  3445566666555554 557864

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.14  E-value=9e-11  Score=109.24  Aligned_cols=103  Identities=11%  Similarity=0.075  Sum_probs=71.5

Q ss_pred             cCCCCCCCCeEEEECCCCcHHHHHHhhC--CCEEEEEecCCChhHHH----HHHHhCCCCeeeecccCCCCCCCccchhe
Q 046488          319 LDIKPGEIRIGLDFSIGTGTFAARMREF--NVTLVSAIINLGAPFNE----MIALRGLVPLYITINQRVPFFDNTLDLIH  392 (480)
Q Consensus       319 L~l~~g~iR~VLDVGCGtG~fAa~Lae~--gV~Vv~vd~d~~~~~~~----~iA~rglip~~~~~ae~LPFpd~SFDlV~  392 (480)
                      |+++||+  +|||+|||+|.++.+|++.  +..|++++++  +.+.+    ....++.+...+..+...+.++..+|.+.
T Consensus        52 l~lkpg~--~VLDlGcG~G~~~~~la~~v~~g~V~gvDis--~~~i~~a~~~a~~~~ni~~i~~d~~~~~~~~~~~~~vd  127 (209)
T d1nt2a_          52 LKLRGDE--RVLYLGAASGTTVSHLADIVDEGIIYAVEYS--AKPFEKLLELVRERNNIIPLLFDASKPWKYSGIVEKVD  127 (209)
T ss_dssp             CCCCSSC--EEEEETCTTSHHHHHHHHHTTTSEEEEECCC--HHHHHHHHHHHHHCSSEEEECSCTTCGGGTTTTCCCEE
T ss_pred             CCCCCCC--EEEEeCCcCCHHHHHHHHhccCCeEEEEeCC--HHHHHHHHHHhhccCCceEEEeeccCccccccccceEE
Confidence            5677876  8999999999999999875  3467777754  23333    22233445556666777777777776665


Q ss_pred             ec-ccccCccChhcHHHHHHHHHhcccCCcEEEEeec
Q 046488          393 TT-RFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDSF  428 (480)
Q Consensus       393 ss-~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~f  428 (480)
                      +. +.+.|+.+.   ..++.|++|+|||||++++..+
T Consensus       128 ~v~~~~~~~~~~---~~~l~~~~~~LkpgG~l~i~~~  161 (209)
T d1nt2a_         128 LIYQDIAQKNQI---EILKANAEFFLKEKGEVVIMVK  161 (209)
T ss_dssp             EEEECCCSTTHH---HHHHHHHHHHEEEEEEEEEEEE
T ss_pred             EEEecccChhhH---HHHHHHHHHHhccCCeEEEEEE
Confidence            43 334444443   5689999999999999988743

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.14  E-value=4.3e-11  Score=117.44  Aligned_cols=98  Identities=20%  Similarity=0.288  Sum_probs=73.1

Q ss_pred             CeEEEECCCCcHHHHHHhhCCC-EEEEEecCCChhHHH-HHHHhCC---CCeeeecccCCCCCCCccchheecccccCcc
Q 046488          327 RIGLDFSIGTGTFAARMREFNV-TLVSAIINLGAPFNE-MIALRGL---VPLYITINQRVPFFDNTLDLIHTTRFLDGWI  401 (480)
Q Consensus       327 R~VLDVGCGtG~fAa~Lae~gV-~Vv~vd~d~~~~~~~-~iA~rgl---ip~~~~~ae~LPFpd~SFDlV~ss~vL~h~~  401 (480)
                      .+|||||||+|.++..++++|. .|++++.+....... .++..+.   +..+.+..+.+++++++||+|++..+.++..
T Consensus        40 ~~VLDlGcGtG~ls~~aa~~Ga~~V~avd~s~~~~~a~~~~~~~~~~~~i~~i~~~~~~l~~~~~~~D~i~se~~~~~~~  119 (328)
T d1g6q1_          40 KIVLDVGCGTGILSMFAAKHGAKHVIGVDMSSIIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWMGYFLL  119 (328)
T ss_dssp             CEEEEETCTTSHHHHHHHHTCCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEEEEEECCCBTTBS
T ss_pred             CEEEEeCCCCCHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhCccccceEEEeehhhccCcccceeEEEEEecceeec
Confidence            4899999999999999999875 677877653222222 2333343   2345567889999999999999977666555


Q ss_pred             ChhcHHHHHHHHHhcccCCcEEE
Q 046488          402 DFVLLDFILYDWDRVLRPGGLLW  424 (480)
Q Consensus       402 d~~~l~~~L~EI~RVLKPGG~fi  424 (480)
                      ....+..++.++.|+|||||.++
T Consensus       120 ~e~~~~~~~~a~~r~LkpgG~ii  142 (328)
T d1g6q1_         120 YESMMDTVLYARDHYLVEGGLIF  142 (328)
T ss_dssp             TTCCHHHHHHHHHHHEEEEEEEE
T ss_pred             cchhHHHHHHHHHhccCCCeEEE
Confidence            54445779999999999999976

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.13  E-value=6.4e-11  Score=115.73  Aligned_cols=99  Identities=18%  Similarity=0.203  Sum_probs=74.8

Q ss_pred             CeEEEECCCCcHHHHHHhhCCC-EEEEEecCCChhHHHHH-HHhCC---CCeeeecccCCCCCCCccchheecccccCcc
Q 046488          327 RIGLDFSIGTGTFAARMREFNV-TLVSAIINLGAPFNEMI-ALRGL---VPLYITINQRVPFFDNTLDLIHTTRFLDGWI  401 (480)
Q Consensus       327 R~VLDVGCGtG~fAa~Lae~gV-~Vv~vd~d~~~~~~~~i-A~rgl---ip~~~~~ae~LPFpd~SFDlV~ss~vL~h~~  401 (480)
                      ++|||||||+|.++..+++.|. .|++++.+.......+. ...+.   +.+..+..+.++++.++||+|++....+...
T Consensus        35 ~~VLDiGcG~G~ls~~aa~~Ga~~V~avd~s~~~~~a~~~~~~n~~~~~v~~~~~~~~~~~~~~~~~D~ivs~~~~~~l~  114 (316)
T d1oria_          35 KVVLDVGSGTGILCMFAAKAGARKVIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMGYCLF  114 (316)
T ss_dssp             CEEEEETCTTSHHHHHHHHTTCSEEEEEECSTTHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECCCBBTBT
T ss_pred             CEEEEEecCCcHHHHHHHHhCCCEEEEEcCcHHHhhhhhHHHHhCCccccceEeccHHHcccccceeEEEeeeeeeeeec
Confidence            4899999999999999999874 68888876433322333 33333   3345567899999999999999876665555


Q ss_pred             ChhcHHHHHHHHHhcccCCcEEEE
Q 046488          402 DFVLLDFILYDWDRVLRPGGLLWI  425 (480)
Q Consensus       402 d~~~l~~~L~EI~RVLKPGG~fiI  425 (480)
                      ....++.++.+++|+|||||.++-
T Consensus       115 ~e~~~~~~l~~~~r~Lkp~G~iiP  138 (316)
T d1oria_         115 YESMLNTVLHARDKWLAPDGLIFP  138 (316)
T ss_dssp             BTCCHHHHHHHHHHHEEEEEEEES
T ss_pred             cHHHHHHHHHHHHhcCCCCeEEEe
Confidence            554567899999999999999873

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.10  E-value=9.2e-11  Score=113.94  Aligned_cols=99  Identities=19%  Similarity=0.183  Sum_probs=73.4

Q ss_pred             CeEEEECCCCcHHHHHHhhCCC-EEEEEecCCChh-HHHHHHHhCC---CCeeeecccCCCCCCCccchheecccccCcc
Q 046488          327 RIGLDFSIGTGTFAARMREFNV-TLVSAIINLGAP-FNEMIALRGL---VPLYITINQRVPFFDNTLDLIHTTRFLDGWI  401 (480)
Q Consensus       327 R~VLDVGCGtG~fAa~Lae~gV-~Vv~vd~d~~~~-~~~~iA~rgl---ip~~~~~ae~LPFpd~SFDlV~ss~vL~h~~  401 (480)
                      .+|||||||+|.++..+++.|. .|++++.+.... +...+++.+.   +....+..+.+++++++||+|++....++..
T Consensus        37 ~~VLDiGcG~G~lsl~aa~~Ga~~V~aid~s~~~~~a~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~D~Ivse~~~~~~~  116 (311)
T d2fyta1          37 KVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEVHLPVEKVDVIISEWMGYFLL  116 (311)
T ss_dssp             CEEEEETCTTSHHHHHHHHTTCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSCSCEEEEEECCCBTTBT
T ss_pred             CEEEEECCCCCHHHHHHHHcCCCEEEEEeCHHHHHHHHHHHHHhCCCccceEEEeeHHHhcCccccceEEEEeeeeeecc
Confidence            4899999999999999999875 688887664221 1223334443   3345567889999999999999976666555


Q ss_pred             ChhcHHHHHHHHHhcccCCcEEEE
Q 046488          402 DFVLLDFILYDWDRVLRPGGLLWI  425 (480)
Q Consensus       402 d~~~l~~~L~EI~RVLKPGG~fiI  425 (480)
                      ....++.++...+|+|||||+++-
T Consensus       117 ~e~~~~~~~~a~~~~Lkp~G~iip  140 (311)
T d2fyta1         117 FESMLDSVLYAKNKYLAKGGSVYP  140 (311)
T ss_dssp             TTCHHHHHHHHHHHHEEEEEEEES
T ss_pred             cccccHHHHHHHHhcCCCCcEEec
Confidence            444456788889999999999874

>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.07  E-value=7.3e-11  Score=109.84  Aligned_cols=99  Identities=20%  Similarity=0.104  Sum_probs=68.8

Q ss_pred             HhcCCCCCCCCeEEEECCCCcHHHHHHhhC---CCEEEEEecCCC--hhHHHHHHHhCCCC--eeeecccCCCCCCCccc
Q 046488          317 EVLDIKPGEIRIGLDFSIGTGTFAARMREF---NVTLVSAIINLG--APFNEMIALRGLVP--LYITINQRVPFFDNTLD  389 (480)
Q Consensus       317 ~vL~l~~g~iR~VLDVGCGtG~fAa~Lae~---gV~Vv~vd~d~~--~~~~~~iA~rglip--~~~~~ae~LPFpd~SFD  389 (480)
                      +.+++++|+  +|||||||+|.+++.|++.   +..+++++.+..  ..+...++..+.-+  ...+++...++.+++||
T Consensus        69 ~~l~l~~g~--~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~~n~~~~~~d~~~~~~~~~~fD  146 (213)
T d1dl5a1          69 EWVGLDKGM--RVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVPEFSPYD  146 (213)
T ss_dssp             HHTTCCTTC--EEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCCEE
T ss_pred             Hhhhccccc--eEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhcccccccccCchHHccccccchh
Confidence            567788876  8999999999999999874   346777775421  11112222223322  34456677777889999


Q ss_pred             hheecccccCccChhcHHHHHHHHHhcccCCcEEEEe
Q 046488          390 LIHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWID  426 (480)
Q Consensus       390 lV~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~  426 (480)
                      +|++..++.+++         .++.++|||||++++.
T Consensus       147 ~I~~~~~~~~~p---------~~l~~~LkpGG~lv~p  174 (213)
T d1dl5a1         147 VIFVTVGVDEVP---------ETWFTQLKEGGRVIVP  174 (213)
T ss_dssp             EEEECSBBSCCC---------HHHHHHEEEEEEEEEE
T ss_pred             hhhhhccHHHhH---------HHHHHhcCCCcEEEEE
Confidence            999998887653         2467889999998873

>d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Bacillus subtilis [TaxId: 1423]

Probab=99.06  E-value=9.7e-11  Score=108.91  Aligned_cols=99  Identities=11%  Similarity=0.158  Sum_probs=69.0

Q ss_pred             CeEEEECCCCcHHHHHHhhC--CCEEEEEecCCC--hhHHHHHHHhCCCCe--eeecccCCC--CCCCccchheeccccc
Q 046488          327 RIGLDFSIGTGTFAARMREF--NVTLVSAIINLG--APFNEMIALRGLVPL--YITINQRVP--FFDNTLDLIHTTRFLD  398 (480)
Q Consensus       327 R~VLDVGCGtG~fAa~Lae~--gV~Vv~vd~d~~--~~~~~~iA~rglip~--~~~~ae~LP--Fpd~SFDlV~ss~vL~  398 (480)
                      ..|||||||+|.++..||+.  +..++++++...  ..+...+...++-++  ..+++..+.  |+++++|.|++.+.. 
T Consensus        31 PlvLeIGcG~G~~~~~lA~~~p~~~~iGiD~~~~~i~~a~~~~~~~~l~Nv~~~~~Da~~l~~~~~~~~~d~v~i~fp~-  109 (204)
T d2fcaa1          31 PIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNFSD-  109 (204)
T ss_dssp             CEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEESCC-
T ss_pred             ceEEEEEecCcHHHHHHHHhCCCCcEEEeecchHHHHHHHHHHHHHhccCchhcccchhhhhcccCchhhhcccccccc-
Confidence            37999999999999999986  577888876521  112223334454333  445566665  889999999987654 


Q ss_pred             CccChhc------HHHHHHHHHhcccCCcEEEEe
Q 046488          399 GWIDFVL------LDFILYDWDRVLRPGGLLWID  426 (480)
Q Consensus       399 h~~d~~~------l~~~L~EI~RVLKPGG~fiI~  426 (480)
                      +|+....      -..++.+++|+|||||.|.|.
T Consensus       110 P~~k~~h~k~Rl~~~~~l~~~~r~LkpgG~l~i~  143 (204)
T d2fcaa1         110 PWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFK  143 (204)
T ss_dssp             CCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEE
T ss_pred             ccchhhhcchhhhHHHHHHHHHHhCCCCcEEEEE
Confidence            4443210      135899999999999999884

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

Probab=99.02  E-value=3e-10  Score=109.63  Aligned_cols=125  Identities=15%  Similarity=0.152  Sum_probs=84.6

Q ss_pred             hHHHhcCCCCCCCCeEEEECCCCcHHHHHHhhC---CCEEEEEecCCC--hhHHHHHHHhCCCCee---eecccCCCCCC
Q 046488          314 LIPEVLDIKPGEIRIGLDFSIGTGTFAARMREF---NVTLVSAIINLG--APFNEMIALRGLVPLY---ITINQRVPFFD  385 (480)
Q Consensus       314 ~I~~vL~l~~g~iR~VLDVGCGtG~fAa~Lae~---gV~Vv~vd~d~~--~~~~~~iA~rglip~~---~~~ae~LPFpd  385 (480)
                      +|-..+++.+|.  +|||+|||+|.++..|++.   +..+++++.+..  ..+.+.+...+.....   .++. ...+..
T Consensus        94 ~Ii~~l~i~pG~--~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g~~~~v~~~~~d~-~~~~~~  170 (266)
T d1o54a_          94 FIAMMLDVKEGD--RIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDI-SEGFDE  170 (266)
T ss_dssp             HHHHHTTCCTTC--EEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCG-GGCCSC
T ss_pred             HHHHhhCCCCCC--EEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccccCcEEEeccc-cccccc
Confidence            566778899886  8999999999999999874   357788776521  1122222233332222   2221 234667


Q ss_pred             CccchheecccccCccChhcHHHHHHHHHhcccCCcEEEEeeccCChhhHHHHHHHHHHcCceeeE
Q 046488          386 NTLDLIHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDSFFCAKEDMNDYLEVFKMLKYKKHK  451 (480)
Q Consensus       386 ~SFDlV~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~f~~~~edL~~~~~~l~~lGfkkl~  451 (480)
                      ..||.|+     .+++++.   .++.++.|+|||||++++.  ...-+++++..+.++..||..+.
T Consensus       171 ~~~D~V~-----~d~p~p~---~~l~~~~~~LKpGG~lv~~--~P~~~Qv~~~~~~l~~~gF~~i~  226 (266)
T d1o54a_         171 KDVDALF-----LDVPDPW---NYIDKCWEALKGGGRFATV--CPTTNQVQETLKKLQELPFIRIE  226 (266)
T ss_dssp             CSEEEEE-----ECCSCGG---GTHHHHHHHEEEEEEEEEE--ESSHHHHHHHHHHHHHSSEEEEE
T ss_pred             cceeeeE-----ecCCCHH---HHHHHHHhhcCCCCEEEEE--eCcccHHHHHHHHHHHCCceeEE
Confidence            7888775     3566664   4899999999999998873  33456677778888888986543

>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.01  E-value=1.1e-09  Score=103.43  Aligned_cols=124  Identities=14%  Similarity=0.101  Sum_probs=77.2

Q ss_pred             cCCCCCCCCeEEEECCCCcHHHHHHhhC---CCEEEEEecCCChhHHHHH---HHh-CCCCeeeec---ccCCCCCCCcc
Q 046488          319 LDIKPGEIRIGLDFSIGTGTFAARMREF---NVTLVSAIINLGAPFNEMI---ALR-GLVPLYITI---NQRVPFFDNTL  388 (480)
Q Consensus       319 L~l~~g~iR~VLDVGCGtG~fAa~Lae~---gV~Vv~vd~d~~~~~~~~i---A~r-glip~~~~~---ae~LPFpd~SF  388 (480)
                      |++++|+  +|||+|||+|.++.+|++.   +-.|++++++  +.+...+   +.+ +.+...+.+   .+.++.....+
T Consensus        69 l~i~pG~--~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s--~~~l~~a~~~a~~~~~~~~i~~d~~~~~~~~~~~~~v  144 (227)
T d1g8aa_          69 FPIKPGK--SVLYLGIASGTTASHVSDIVGWEGKIFGIEFS--PRVLRELVPIVEERRNIVPILGDATKPEEYRALVPKV  144 (227)
T ss_dssp             CCCCTTC--EEEEETTTSTTHHHHHHHHHCTTSEEEEEESC--HHHHHHHHHHHSSCTTEEEEECCTTCGGGGTTTCCCE
T ss_pred             cccCCCC--EEEEeccCCCHHHHHHHHHhCCCCEEEEEeCc--HHHHHHHHHHHHhcCCceEEEEECCCcccccccccce
Confidence            4577776  8999999999999999985   3467777754  2333322   222 223233333   34455666789


Q ss_pred             chheecccccCccChhcHHHHHHHHHhcccCCcEEEEeeccC------ChhhHHHHHHHHHHcCceeeE
Q 046488          389 DLIHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDSFFC------AKEDMNDYLEVFKMLKYKKHK  451 (480)
Q Consensus       389 DlV~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~f~~------~~edL~~~~~~l~~lGfkkl~  451 (480)
                      |+|++.  +.+..+.   ..++.++.|+|||||++++..+.+      ..+.+....+.+...||+.+.
T Consensus       145 D~i~~d--~~~~~~~---~~~l~~~~~~LkpgG~lvi~~ka~~~~~~~~~~~v~~~v~~l~~~gf~iie  208 (227)
T d1g8aa_         145 DVIFED--VAQPTQA---KILIDNAEVYLKRGGYGMIAVKSRSIDVTKEPEQVFREVERELSEYFEVIE  208 (227)
T ss_dssp             EEEEEC--CCSTTHH---HHHHHHHHHHEEEEEEEEEEEEGGGTCTTSCHHHHHHHHHHHHHTTSEEEE
T ss_pred             EEEEEE--ccccchH---HHHHHHHHHhcccCCeEEEEEECCccCCCCCHHHHHHHHHHHHHcCCEEEE
Confidence            988863  3333332   568999999999999999864322      222332223334455887664

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.97  E-value=2.8e-10  Score=112.27  Aligned_cols=106  Identities=9%  Similarity=-0.005  Sum_probs=72.1

Q ss_pred             HhcCCCCCCCCeEEEECCCCcHHHHHHhhC-CC-EEEEEecCCChh--HHHHHH-------Hh----CCCCeeeecccCC
Q 046488          317 EVLDIKPGEIRIGLDFSIGTGTFAARMREF-NV-TLVSAIINLGAP--FNEMIA-------LR----GLVPLYITINQRV  381 (480)
Q Consensus       317 ~vL~l~~g~iR~VLDVGCGtG~fAa~Lae~-gV-~Vv~vd~d~~~~--~~~~iA-------~r----glip~~~~~ae~L  381 (480)
                      +.+++++++  +|||+|||+|.++..++.. +. .++|++++...-  +..+..       ..    +.+.+..+++..+
T Consensus       145 ~~~~l~~~~--~vlD~GcG~G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~~~~gd~~~~  222 (328)
T d1nw3a_         145 DEIKMTDDD--LFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFLSE  222 (328)
T ss_dssp             HHSCCCTTC--EEEEETCTTSHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEEECCTTSH
T ss_pred             HHcCCCCCC--EEEEcCCCCCHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCceEEEECccccc
Confidence            445677665  8999999999999888764 44 688888763111  111111       01    1244567788889


Q ss_pred             CCCCCccch-heecccccCccChhcHHHHHHHHHhcccCCcEEEEee
Q 046488          382 PFFDNTLDL-IHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDS  427 (480)
Q Consensus       382 PFpd~SFDl-V~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~  427 (480)
                      ||.+..||+ |+....+.|+.+.   ..+|.|+.|+|||||++++..
T Consensus       223 ~~~~~~~~advi~~~~~~f~~~~---~~~l~e~~r~LKpGg~iv~~~  266 (328)
T d1nw3a_         223 EWRERIANTSVIFVNNFAFGPEV---DHQLKERFANMKEGGRIVSSK  266 (328)
T ss_dssp             HHHHHHHHCSEEEECCTTTCHHH---HHHHHHHHTTCCTTCEEEESS
T ss_pred             ccccccCcceEEEEcceecchHH---HHHHHHHHHhCCCCcEEEEec
Confidence            998888865 4444455565443   568999999999999998764

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.94  E-value=1.9e-09  Score=106.88  Aligned_cols=122  Identities=16%  Similarity=0.215  Sum_probs=77.6

Q ss_pred             hHHHhcCCCCCCCCeEEEECCCCcHHHHHHhhC---CCEEEEEecCCChhHHHHHHHh------------------CCCC
Q 046488          314 LIPEVLDIKPGEIRIGLDFSIGTGTFAARMREF---NVTLVSAIINLGAPFNEMIALR------------------GLVP  372 (480)
Q Consensus       314 ~I~~vL~l~~g~iR~VLDVGCGtG~fAa~Lae~---gV~Vv~vd~d~~~~~~~~iA~r------------------glip  372 (480)
                      +|-..|++.+|.  +|||+|||+|.++..|++.   +-.+++++.+.  ++.. .|++                  ..+.
T Consensus        89 ~Il~~l~i~pG~--rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~--~~~~-~A~~n~~~~~~~~~~~~~~~~~~nv~  163 (324)
T d2b25a1          89 MILSMMDINPGD--TVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRK--DHHD-LAKKNYKHWRDSWKLSHVEEWPDNVD  163 (324)
T ss_dssp             HHHHHHTCCTTC--EEEEECCTTSHHHHHHHHHHCTTCEEEEEESSH--HHHH-HHHHHHHHHHHHHTTTCSSCCCCCEE
T ss_pred             HHHHHhCCCCCC--EEEEecccccHHHHHHHHHhCCCcEEEEecCCH--HHHH-HHHHHHHHhhhhhhhhhhhcccccee
Confidence            455678899986  8999999999999999874   34678877652  2222 2211                  1122


Q ss_pred             eeeecccCC--CCCCCccchheecccccCccChhcHHHHHHHHHhcccCCcEEEEeeccCChhhHHHHHHHHHH--cCce
Q 046488          373 LYITINQRV--PFFDNTLDLIHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDSFFCAKEDMNDYLEVFKM--LKYK  448 (480)
Q Consensus       373 ~~~~~ae~L--PFpd~SFDlV~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~f~~~~edL~~~~~~l~~--lGfk  448 (480)
                      +.+++....  .+++.+||.|+.     .++++.   .++.++.|+|||||++++  |...-+++.+..+.++.  +||.
T Consensus       164 ~~~~di~~~~~~~~~~~fD~V~L-----D~p~P~---~~l~~~~~~LKpGG~lv~--~~P~i~Qv~~~~~~l~~~~~~f~  233 (324)
T d2b25a1         164 FIHKDISGATEDIKSLTFDAVAL-----DMLNPH---VTLPVFYPHLKHGGVCAV--YVVNITQVIELLDGIRTCELALS  233 (324)
T ss_dssp             EEESCTTCCC-------EEEEEE-----CSSSTT---TTHHHHGGGEEEEEEEEE--EESSHHHHHHHHHHHHHHTCCEE
T ss_pred             EEecchhhcccccCCCCcceEee-----cCcCHH---HHHHHHHHhccCCCEEEE--EeCCHHHHHHHHHHHHHcCCCce
Confidence            344443333  346789999875     344543   389999999999999887  44555667777777764  4675


Q ss_pred             ee
Q 046488          449 KH  450 (480)
Q Consensus       449 kl  450 (480)
                      .+
T Consensus       234 ~i  235 (324)
T d2b25a1         234 CE  235 (324)
T ss_dssp             EE
T ss_pred             ee
Confidence            43

>d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=98.92  E-value=1.4e-09  Score=100.84  Aligned_cols=99  Identities=17%  Similarity=0.245  Sum_probs=69.6

Q ss_pred             CeEEEECCCCcHHHHHHhhC--CCEEEEEecCCC--hhHHHHHHHhCCC--CeeeecccCCC--CCCCccchheeccccc
Q 046488          327 RIGLDFSIGTGTFAARMREF--NVTLVSAIINLG--APFNEMIALRGLV--PLYITINQRVP--FFDNTLDLIHTTRFLD  398 (480)
Q Consensus       327 R~VLDVGCGtG~fAa~Lae~--gV~Vv~vd~d~~--~~~~~~iA~rgli--p~~~~~ae~LP--Fpd~SFDlV~ss~vL~  398 (480)
                      ..|||||||+|.++..+|+.  +..++++++...  ..+..++...+.-  .++.+++..+.  |+++++|.|++.+. .
T Consensus        33 plvLdIGcG~G~~~~~lA~~~p~~~~iGid~~~~~v~~a~~~~~~~~l~Ni~~~~~da~~l~~~~~~~~~~~i~i~fP-d  111 (204)
T d1yzha1          33 PIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNFS-D  111 (204)
T ss_dssp             CEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEESC-C
T ss_pred             CeEEEEeccCCHHHHHHHHHCCCCceEEEeccHHHHHHHHHhhhhhccccceeeecCHHHHhhhccCCceehhccccc-c
Confidence            37999999999999999986  677888886521  1122334444543  34556666665  78999999997653 4


Q ss_pred             CccChh------cHHHHHHHHHhcccCCcEEEEe
Q 046488          399 GWIDFV------LLDFILYDWDRVLRPGGLLWID  426 (480)
Q Consensus       399 h~~d~~------~l~~~L~EI~RVLKPGG~fiI~  426 (480)
                      +|+...      .-..+|.++.|+|||||.|.+.
T Consensus       112 Pw~K~~h~krRl~~~~~l~~~~~~LkpgG~l~i~  145 (204)
T d1yzha1         112 PWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFK  145 (204)
T ss_dssp             CCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEE
T ss_pred             cccchhhhhhhhhHHHHHHHHHHhCCCCcEEEEE
Confidence            554321      0145899999999999999874

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.90  E-value=7.1e-10  Score=104.09  Aligned_cols=99  Identities=18%  Similarity=0.140  Sum_probs=68.5

Q ss_pred             Hhc--CCCCCCCCeEEEECCCCcHHHHHHhhC---CCEEEEEecCCC--hhHHHHHHHhCC-------CCeeeecccCCC
Q 046488          317 EVL--DIKPGEIRIGLDFSIGTGTFAARMREF---NVTLVSAIINLG--APFNEMIALRGL-------VPLYITINQRVP  382 (480)
Q Consensus       317 ~vL--~l~~g~iR~VLDVGCGtG~fAa~Lae~---gV~Vv~vd~d~~--~~~~~~iA~rgl-------ip~~~~~ae~LP  382 (480)
                      ++|  .+++|+  +|||||||+|.+++.|++.   ...|++++.+..  ..+...+.+.+.       +....+++...+
T Consensus        68 e~L~~~l~~g~--~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~gD~~~~~  145 (224)
T d1i1na_          68 ELLFDQLHEGA--KALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGY  145 (224)
T ss_dssp             HHTTTTSCTTC--EEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCC
T ss_pred             HHHhhccCCCC--eEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccceEEEEeeccccc
Confidence            455  467775  8999999999999888874   457888875421  111122222221       233456677778


Q ss_pred             CCCCccchheecccccCccChhcHHHHHHHHHhcccCCcEEEEe
Q 046488          383 FFDNTLDLIHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWID  426 (480)
Q Consensus       383 Fpd~SFDlV~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~  426 (480)
                      ++++.||.|++..++.+.+         .++.+.|||||++++-
T Consensus       146 ~~~~~fD~I~~~~~~~~ip---------~~l~~~LkpGG~LV~p  180 (224)
T d1i1na_         146 AEEAPYDAIHVGAAAPVVP---------QALIDQLKPGGRLILP  180 (224)
T ss_dssp             GGGCCEEEEEECSBBSSCC---------HHHHHTEEEEEEEEEE
T ss_pred             chhhhhhhhhhhcchhhcC---------HHHHhhcCCCcEEEEE
Confidence            8899999999988876543         3567899999999873

>d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Chalcone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.88  E-value=1e-09  Score=104.42  Aligned_cols=121  Identities=17%  Similarity=0.108  Sum_probs=82.6

Q ss_pred             CCCCeEEEECCCCcHHHHHHhhC--CCEEEEEecCCChhHHHHHHHhCCCCeeeec-ccCCCCCCCccchheecccccCc
Q 046488          324 GEIRIGLDFSIGTGTFAARMREF--NVTLVSAIINLGAPFNEMIALRGLVPLYITI-NQRVPFFDNTLDLIHTTRFLDGW  400 (480)
Q Consensus       324 g~iR~VLDVGCGtG~fAa~Lae~--gV~Vv~vd~d~~~~~~~~iA~rglip~~~~~-ae~LPFpd~SFDlV~ss~vL~h~  400 (480)
                      ...++|||||||+|.++..++++  +..++..|+.   ...+.......+....++ .+.+|    ..|++++.++||+|
T Consensus        80 ~~~~~vlDiGGG~G~~~~~l~~~~P~l~~~v~Dlp---~vi~~~~~~~ri~~~~gd~~~~~p----~~D~~~l~~vLh~~  152 (244)
T d1fp1d2          80 EGISTLVDVGGGSGRNLELIISKYPLIKGINFDLP---QVIENAPPLSGIEHVGGDMFASVP----QGDAMILKAVCHNW  152 (244)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECH---HHHTTCCCCTTEEEEECCTTTCCC----CEEEEEEESSGGGS
T ss_pred             cCCcEEEEecCCCcHHHHHHHHHCCCCeEEEecch---hhhhccCCCCCeEEecCCcccccc----cceEEEEehhhhhC
Confidence            34679999999999999999987  5666655531   221111011123333343 34333    34999999999999


Q ss_pred             cChhcHHHHHHHHHhcccCCcEEEEeeccCCh------h--------------------hHHHHHHHHHHcCceeeEE
Q 046488          401 IDFVLLDFILYDWDRVLRPGGLLWIDSFFCAK------E--------------------DMNDYLEVFKMLKYKKHKW  452 (480)
Q Consensus       401 ~d~~~l~~~L~EI~RVLKPGG~fiI~~f~~~~------e--------------------dL~~~~~~l~~lGfkkl~W  452 (480)
                      .+.+. ..+|+.+++.|+|||.++|.++.-+.      .                    ..++|.+++++.||+.++.
T Consensus       153 ~de~~-~~iL~~~~~aL~pgg~llI~e~v~~~~~~~~~~~~~~~~~d~~m~~~~~g~ert~~e~~~ll~~AGF~~v~v  229 (244)
T d1fp1d2         153 SDEKC-IEFLSNCHKALSPNGKVIIVEFILPEEPNTSEESKLVSTLDNLMFITVGGRERTEKQYEKLSKLSGFSKFQV  229 (244)
T ss_dssp             CHHHH-HHHHHHHHHHEEEEEEEEEEEEEECSSCCSSHHHHHHHHHHHHHHHHHSCCCEEHHHHHHHHHHTTCSEEEE
T ss_pred             CHHHH-HHHHHHHHHHcCCCcEEEEEEEEecCCCCCchHHHHHHHHHHHHHhhCCCcCCCHHHHHHHHHHcCCCceEE
Confidence            87654 67999999999999999987543211      0                    1246789999999998764

>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=98.83  E-value=3.9e-09  Score=99.43  Aligned_cols=98  Identities=18%  Similarity=0.137  Sum_probs=68.1

Q ss_pred             HHHhcCCCCCCCCeEEEECCCCcHHHHHHhhCCCEEEEEecCCChhHHHHHHHh---C--CCCeeeecccCCCCCCCccc
Q 046488          315 IPEVLDIKPGEIRIGLDFSIGTGTFAARMREFNVTLVSAIINLGAPFNEMIALR---G--LVPLYITINQRVPFFDNTLD  389 (480)
Q Consensus       315 I~~vL~l~~g~iR~VLDVGCGtG~fAa~Lae~gV~Vv~vd~d~~~~~~~~iA~r---g--lip~~~~~ae~LPFpd~SFD  389 (480)
                      +-+.|++++++  +|||||||+|.+++.|++.+-.|++++.+.   .....|.+   .  .+.+..++...-....+.||
T Consensus        62 ml~~L~l~~g~--~VLdIG~GsGy~ta~La~l~~~V~aiE~~~---~~~~~A~~~~~~~~nv~~~~~d~~~g~~~~~pfD  136 (224)
T d1vbfa_          62 MLDELDLHKGQ--KVLEIGTGIGYYTALIAEIVDKVVSVEINE---KMYNYASKLLSYYNNIKLILGDGTLGYEEEKPYD  136 (224)
T ss_dssp             HHHHTTCCTTC--EEEEECCTTSHHHHHHHHHSSEEEEEESCH---HHHHHHHHHHTTCSSEEEEESCGGGCCGGGCCEE
T ss_pred             HHHHhhhcccc--eEEEecCCCCHHHHHHHHHhcccccccccH---HHHHHHHHHHhcccccccccCchhhcchhhhhHH
Confidence            34677888886  899999999999999999887888888652   22222222   2  23344455433333567899


Q ss_pred             hheecccccCccChhcHHHHHHHHHhcccCCcEEEEe
Q 046488          390 LIHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWID  426 (480)
Q Consensus       390 lV~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~  426 (480)
                      .|++..++.+++         .++.+.|||||++++-
T Consensus       137 ~Iiv~~a~~~ip---------~~l~~qLk~GGrLV~p  164 (224)
T d1vbfa_         137 RVVVWATAPTLL---------CKPYEQLKEGGIMILP  164 (224)
T ss_dssp             EEEESSBBSSCC---------HHHHHTEEEEEEEEEE
T ss_pred             HHHhhcchhhhh---------HHHHHhcCCCCEEEEE
Confidence            999988876553         2345789999998873

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.70  E-value=2.1e-08  Score=102.11  Aligned_cols=103  Identities=12%  Similarity=-0.011  Sum_probs=61.3

Q ss_pred             HhcCCCCCCCCeEEEECCCCcHHHHHHhhC-CC-EEEEEecCCChhHHHHHHHh------------CC-C-Ceee---ec
Q 046488          317 EVLDIKPGEIRIGLDFSIGTGTFAARMREF-NV-TLVSAIINLGAPFNEMIALR------------GL-V-PLYI---TI  377 (480)
Q Consensus       317 ~vL~l~~g~iR~VLDVGCGtG~fAa~Lae~-gV-~Vv~vd~d~~~~~~~~iA~r------------gl-i-p~~~---~~  377 (480)
                      +.+++++++  +|||+|||+|.++..++.. |. .++|++++.   .+...|.+            +. . ....   +.
T Consensus       210 ~~l~Lkpgd--~fLDLGCG~G~~vl~aA~~~g~~~v~GIDiS~---~~i~~Ak~~~~e~~~~~~~~g~~~~~~~~~~~~~  284 (406)
T d1u2za_         210 QQCQLKKGD--TFMDLGSGVGNCVVQAALECGCALSFGCEIMD---DASDLTILQYEELKKRCKLYGMRLNNVEFSLKKS  284 (406)
T ss_dssp             HHTTCCTTC--EEEEESCTTSHHHHHHHHHHCCSEEEEEECCH---HHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSC
T ss_pred             HHhCCCCCC--EEEeCCCCCcHHHHHHHHHcCCCeEEEEeCCH---HHHHHHHHHHHHHhhhhhhhccccccceeeeeec
Confidence            345677776  8999999999999998875 54 788888752   22222211            11 0 1111   11


Q ss_pred             ccCCCCCCC---ccchheecccccCccChhcHHHHHHHHHhcccCCcEEEEeec
Q 046488          378 NQRVPFFDN---TLDLIHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDSF  428 (480)
Q Consensus       378 ae~LPFpd~---SFDlV~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~f  428 (480)
                      ....++.+.   .+|+|++. .+.+..+   +..+|.|+.|+|||||+++....
T Consensus       285 f~~~~~~d~~~~~adVV~in-n~~f~~~---l~~~L~ei~r~LKPGGrIVs~~~  334 (406)
T d1u2za_         285 FVDNNRVAELIPQCDVILVN-NFLFDED---LNKKVEKILQTAKVGCKIISLKS  334 (406)
T ss_dssp             STTCHHHHHHGGGCSEEEEC-CTTCCHH---HHHHHHHHHTTCCTTCEEEESSC
T ss_pred             hhhccccccccccceEEEEe-cccCchH---HHHHHHHHHHhcCCCcEEEEecc
Confidence            111122222   34455543 2334333   36799999999999999988653

>d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.66  E-value=1.7e-08  Score=95.15  Aligned_cols=121  Identities=12%  Similarity=0.052  Sum_probs=80.9

Q ss_pred             CCCeEEEECCCCcHHHHHHhhC--CCEEEEEecCCChhHHHHHHHhCCCCeeeec-ccCCCCCCCccchheecccccCcc
Q 046488          325 EIRIGLDFSIGTGTFAARMREF--NVTLVSAIINLGAPFNEMIALRGLVPLYITI-NQRVPFFDNTLDLIHTTRFLDGWI  401 (480)
Q Consensus       325 ~iR~VLDVGCGtG~fAa~Lae~--gV~Vv~vd~d~~~~~~~~iA~rglip~~~~~-ae~LPFpd~SFDlV~ss~vL~h~~  401 (480)
                      ..++|||||||+|.++..++++  +..++..|+..   ..+.......+....++ .+.+|.    .|+++..+++++|.
T Consensus        81 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~---vi~~~~~~~r~~~~~~d~~~~~P~----ad~~~l~~vlh~~~  153 (243)
T d1kyza2          81 GLKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPH---VIEDAPSYPGVEHVGGDMFVSIPK----ADAVFMKWICHDWS  153 (243)
T ss_dssp             SCSEEEEETCTTSHHHHHHHHHCTTSEEEEEECTT---TTTTCCCCTTEEEEECCTTTCCCC----CSCEECSSSSTTSC
T ss_pred             CCcEEEEecCCCcHHHHHHHHHCCCCeEEEcccHH---hhhhcccCCceEEecccccccCCC----cceEEEEEEeecCC
Confidence            3578999999999999999987  67777777532   11100011112233333 444553    46677789999998


Q ss_pred             ChhcHHHHHHHHHhcccCCcEEEEeeccCC---------------------------hhhHHHHHHHHHHcCceeeEEE
Q 046488          402 DFVLLDFILYDWDRVLRPGGLLWIDSFFCA---------------------------KEDMNDYLEVFKMLKYKKHKWV  453 (480)
Q Consensus       402 d~~~l~~~L~EI~RVLKPGG~fiI~~f~~~---------------------------~edL~~~~~~l~~lGfkkl~W~  453 (480)
                      +... ..+|+++++.|+|||+++|.+....                           ....++|.+++++.||+.++..
T Consensus       154 d~~~-~~iL~~~~~al~pgg~~li~d~~~~~~~~~~~~~~~~~~~d~~ml~~~~~g~ert~~e~~~ll~~AGf~~vkv~  231 (243)
T d1kyza2         154 DEHC-LKFLKNCYEALPDNGKVIVAECILPVAPDSSLATKGVVHIDVIMLAHNPGGKERTQKEFEDLAKGAGFQGFKVH  231 (243)
T ss_dssp             HHHH-HHHHHHHHHHCCSSSCEEEEECEECSSCCCCHHHHHHHHHHHHHHHHCSSCCCEEHHHHHHHHHHHCCSCEEEE
T ss_pred             HHHH-HHHHHHHHHhcCCCceEEEEEEEecCCCCCchhhHHHHHHHHHHHhhCCCCCcCCHHHHHHHHHHcCCCcEEEE
Confidence            6654 6799999999999999888642210                           0013468889999999887643

>d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Isoflavone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.66  E-value=1.8e-08  Score=95.53  Aligned_cols=121  Identities=16%  Similarity=0.093  Sum_probs=81.5

Q ss_pred             CCCeEEEECCCCcHHHHHHhhC--CCEEEEEecCCChhHHHHHHHhCCCCeeeecccCCCCCCCccchheecccccCccC
Q 046488          325 EIRIGLDFSIGTGTFAARMREF--NVTLVSAIINLGAPFNEMIALRGLVPLYITINQRVPFFDNTLDLIHTTRFLDGWID  402 (480)
Q Consensus       325 ~iR~VLDVGCGtG~fAa~Lae~--gV~Vv~vd~d~~~~~~~~iA~rglip~~~~~ae~LPFpd~SFDlV~ss~vL~h~~d  402 (480)
                      ..++|||||||+|.++..++++  +..++..|+.   +..+.......+.++.++... |.  ..+|+++..++||+|.+
T Consensus        80 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp---~vi~~~~~~~rv~~~~gD~f~-~~--p~aD~~~l~~vLHdw~d  153 (244)
T d1fp2a2          80 GLESIVDVGGGTGTTAKIICETFPKLKCIVFDRP---QVVENLSGSNNLTYVGGDMFT-SI--PNADAVLLKYILHNWTD  153 (244)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECH---HHHTTCCCBTTEEEEECCTTT-CC--CCCSEEEEESCGGGSCH
T ss_pred             CceEEEEecCCccHHHHHHHHhCCCCeEEEecCH---HHHHhCcccCceEEEecCccc-CC--CCCcEEEEEeecccCCh
Confidence            3568999999999999999887  5666666641   221111111234444444221 22  25799999999999987


Q ss_pred             hhcHHHHHHHHHhcccCC---cEEEEeeccCC-h------------------------hhHHHHHHHHHHcCceeeEE
Q 046488          403 FVLLDFILYDWDRVLRPG---GLLWIDSFFCA-K------------------------EDMNDYLEVFKMLKYKKHKW  452 (480)
Q Consensus       403 ~~~l~~~L~EI~RVLKPG---G~fiI~~f~~~-~------------------------edL~~~~~~l~~lGfkkl~W  452 (480)
                      ... ..+|+.+++.|+||   |+++|.+..-. .                        ...++|.+++++.||+..+.
T Consensus       154 ~~~-~~iL~~~~~al~pgg~~~~lli~e~~~~~~~~~~~~~~~~~~~dl~m~~~~G~ert~~e~~~ll~~AGf~~~~i  230 (244)
T d1fp2a2         154 KDC-LRILKKCKEAVTNDGKRGKVTIIDMVIDKKKDENQVTQIKLLMDVNMACLNGKERNEEEWKKLFIEAGFQHYKI  230 (244)
T ss_dssp             HHH-HHHHHHHHHHHSGGGCCCEEEEEECEECTTTSCHHHHHHHHHHHHHGGGGTCCCEEHHHHHHHHHHTTCCEEEE
T ss_pred             HHH-HHHHHHHHHHcCcccCCcEEEEEEeecCCCCCCchHHHHHHHHHHHHHhCCCcCCCHHHHHHHHHHcCCceEEE
Confidence            754 66999999999999   77776532110 0                        01356889999999998763

>d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Escherichia coli [TaxId: 562]

Probab=98.55  E-value=1.5e-07  Score=91.05  Aligned_cols=135  Identities=13%  Similarity=0.154  Sum_probs=81.1

Q ss_pred             hhhHHHhcCCCCCCCCeEEEECCCCcHHHHHHhhC--CCEEEEEecCCChh--HHHHHHHhCC--CCeeeec-ccCCCCC
Q 046488          312 DFLIPEVLDIKPGEIRIGLDFSIGTGTFAARMREF--NVTLVSAIINLGAP--FNEMIALRGL--VPLYITI-NQRVPFF  384 (480)
Q Consensus       312 d~~I~~vL~l~~g~iR~VLDVGCGtG~fAa~Lae~--gV~Vv~vd~d~~~~--~~~~iA~rgl--ip~~~~~-ae~LPFp  384 (480)
                      +.+++.++........+|||+|||+|..+..++..  +..++++|++..+-  +...+..-+.  +.++.++ .+  +++
T Consensus        95 E~lv~~~l~~~~~~~~~vlDlGtGSG~I~i~la~~~p~~~v~avDis~~Al~~A~~Na~~~~~~~v~~~~~d~~~--~~~  172 (274)
T d2b3ta1          95 ECLVEQALARLPEQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFS--ALA  172 (274)
T ss_dssp             HHHHHHHHHHSCSSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTG--GGT
T ss_pred             hhhhhhHhhhhcccccceeeeehhhhHHHHHHHhhCCcceeeeccchhHHHhHHHHHHHHhCcccceeeeccccc--ccC
Confidence            34455444422222347999999999999988774  67888887653211  1112222232  3334443 33  455


Q ss_pred             CCccchheecccccC------------ccC----------hhcHHHHHHHHHhcccCCcEEEEeeccCChhhHHHHHHHH
Q 046488          385 DNTLDLIHTTRFLDG------------WID----------FVLLDFILYDWDRVLRPGGLLWIDSFFCAKEDMNDYLEVF  442 (480)
Q Consensus       385 d~SFDlV~ss~vL~h------------~~d----------~~~l~~~L~EI~RVLKPGG~fiI~~f~~~~edL~~~~~~l  442 (480)
                      ++.||+|+|+=-...            +.+          ......++.+..+.|+|||.+++-.-.   .+.+.+.+++
T Consensus       173 ~~~fDlIvsNPPYi~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~a~~~L~~~G~l~lEig~---~q~~~v~~~l  249 (274)
T d2b3ta1         173 GQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHGW---QQGEAVRQAF  249 (274)
T ss_dssp             TCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECCS---SCHHHHHHHH
T ss_pred             CCceeEEEecchhhhhhhhcccccccccchhhhcccccccchHHHHHHHHHHHhcCCCCEEEEEECc---hHHHHHHHHH
Confidence            789999999621110            110          012345889999999999999884322   2235566788


Q ss_pred             HHcCceeeE
Q 046488          443 KMLKYKKHK  451 (480)
Q Consensus       443 ~~lGfkkl~  451 (480)
                      +..||..+.
T Consensus       250 ~~~gf~~i~  258 (274)
T d2b3ta1         250 ILAGYHDVE  258 (274)
T ss_dssp             HHTTCTTCC
T ss_pred             HHCCCCeEE
Confidence            888997653

>d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.54  E-value=6.1e-08  Score=90.88  Aligned_cols=95  Identities=19%  Similarity=0.178  Sum_probs=65.0

Q ss_pred             Hhc--CCCCCCCCeEEEECCCCcHHHHHHhhC----C----CEEEEEecCCChhHHHHHHHh------------CCCCee
Q 046488          317 EVL--DIKPGEIRIGLDFSIGTGTFAARMREF----N----VTLVSAIINLGAPFNEMIALR------------GLVPLY  374 (480)
Q Consensus       317 ~vL--~l~~g~iR~VLDVGCGtG~fAa~Lae~----g----V~Vv~vd~d~~~~~~~~iA~r------------glip~~  374 (480)
                      +.|  ++++++  +|||||||||.+++.|++.    |    ..|++++.+.  +... .|.+            ..+.+.
T Consensus        72 ~~L~~~l~~g~--~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~--~l~~-~a~~~l~~~~~~~~~~~nv~~~  146 (223)
T d1r18a_          72 EYLRDHLKPGA--RILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQA--ELVR-RSKANLNTDDRSMLDSGQLLIV  146 (223)
T ss_dssp             HHTTTTCCTTC--EEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCH--HHHH-HHHHHHHHHHHHHHHHTSEEEE
T ss_pred             HHHhhccCCCC--eEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCH--HHHH-HHHHhhhhcchhhcCccEEEEE
Confidence            444  577775  8999999999999888764    3    3677877542  2222 1111            123445


Q ss_pred             eecccCCCCCCCccchheecccccCccChhcHHHHHHHHHhcccCCcEEEE
Q 046488          375 ITINQRVPFFDNTLDLIHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWI  425 (480)
Q Consensus       375 ~~~ae~LPFpd~SFDlV~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI  425 (480)
                      .+++.....+.+.||.|++..++.+.+         ..+.+.|||||++++
T Consensus       147 ~~d~~~~~~~~~~fD~Iiv~~a~~~~p---------~~l~~~Lk~gG~lV~  188 (223)
T d1r18a_         147 EGDGRKGYPPNAPYNAIHVGAAAPDTP---------TELINQLASGGRLIV  188 (223)
T ss_dssp             ESCGGGCCGGGCSEEEEEECSCBSSCC---------HHHHHTEEEEEEEEE
T ss_pred             ecccccccccccceeeEEEEeechhch---------HHHHHhcCCCcEEEE
Confidence            566666666788999999988876543         235689999999877

>d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Chemotaxis receptor methyltransferase CheR, C-terminal domain
domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.47  E-value=7.8e-08  Score=87.64  Aligned_cols=44  Identities=20%  Similarity=0.243  Sum_probs=37.2

Q ss_pred             CCCCCccchheecccccCccChhcHHHHHHHHHhcccCCcEEEEe
Q 046488          382 PFFDNTLDLIHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWID  426 (480)
Q Consensus       382 PFpd~SFDlV~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~  426 (480)
                      +.+.+.||+|+|..+|+.+.++.. ..++..+++.|+|||+|++.
T Consensus       127 ~~~~~~fDvI~CRNVLiYf~~~~~-~~vl~~l~~~L~pGG~L~lG  170 (193)
T d1af7a2         127 YNVPGPFDAIFCRNVMIYFDKTTQ-EDILRRFVPLLKPDGLLFAG  170 (193)
T ss_dssp             CCCCCCEEEEEECSSGGGSCHHHH-HHHHHHHGGGEEEEEEEEEC
T ss_pred             cCCCCCccEEEeehhHHhcCHHHH-HHHHHHHHHHhCCCcEEEEe
Confidence            345688999999999998875543 77999999999999998885

>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=98.46  E-value=8.9e-08  Score=89.45  Aligned_cols=100  Identities=19%  Similarity=0.104  Sum_probs=67.3

Q ss_pred             HHHhcCCCCCCCCeEEEECCCCcHHHHHHhhC-CCEEEEEecCC--ChhHHHHHHHhCCCC--eeeecccCCCCCCCccc
Q 046488          315 IPEVLDIKPGEIRIGLDFSIGTGTFAARMREF-NVTLVSAIINL--GAPFNEMIALRGLVP--LYITINQRVPFFDNTLD  389 (480)
Q Consensus       315 I~~vL~l~~g~iR~VLDVGCGtG~fAa~Lae~-gV~Vv~vd~d~--~~~~~~~iA~rglip--~~~~~ae~LPFpd~SFD  389 (480)
                      +-+.|++++++  +|||||||+|..++.|+.. |-.|++++.+.  ...+...+.+.+..+  +..++...-....+.||
T Consensus        70 ml~~L~l~~g~--~VLeIGsGsGY~taila~l~g~~V~~ie~~~~l~~~a~~~l~~~g~~nv~~~~gd~~~g~~~~~pfD  147 (215)
T d1jg1a_          70 MLEIANLKPGM--NILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGSKGFPPKAPYD  147 (215)
T ss_dssp             HHHHHTCCTTC--CEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCCEE
T ss_pred             HHHhhccCccc--eEEEecCCCChhHHHHHHhhCceeEEEeccHHHHHHHHHHHHHcCCceeEEEECccccCCcccCcce
Confidence            34677888886  8999999999999999876 65577776542  111222233334333  34455544445688899


Q ss_pred             hheecccccCccChhcHHHHHHHHHhcccCCcEEEE
Q 046488          390 LIHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWI  425 (480)
Q Consensus       390 lV~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI  425 (480)
                      .|++..++.+.++.         +..-|||||++++
T Consensus       148 ~Iiv~~a~~~ip~~---------l~~qL~~gGrLv~  174 (215)
T d1jg1a_         148 VIIVTAGAPKIPEP---------LIEQLKIGGKLII  174 (215)
T ss_dssp             EEEECSBBSSCCHH---------HHHTEEEEEEEEE
T ss_pred             eEEeecccccCCHH---------HHHhcCCCCEEEE
Confidence            99998888655422         3456999999876

>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Met-10+ protein-like
domain: Hypothetical protein PH0793
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.27  E-value=9.9e-07  Score=84.14  Aligned_cols=119  Identities=17%  Similarity=0.202  Sum_probs=76.7

Q ss_pred             CCCCCCCeEEEECCCCcHHHHHHhhCC-CEEEEEecCCChh--HHHHHHHhCC---CCeeeecccCCCCCCCccchheec
Q 046488          321 IKPGEIRIGLDFSIGTGTFAARMREFN-VTLVSAIINLGAP--FNEMIALRGL---VPLYITINQRVPFFDNTLDLIHTT  394 (480)
Q Consensus       321 l~~g~iR~VLDVGCGtG~fAa~Lae~g-V~Vv~vd~d~~~~--~~~~iA~rgl---ip~~~~~ae~LPFpd~SFDlV~ss  394 (480)
                      +++|+  +|||+|||+|.++..++++| ..+++++++..+-  +.+.+...+.   +.++.+++..++ ..+.||.|++.
T Consensus       105 ~~~g~--~VlD~~aG~G~~~l~~a~~~~~~V~avd~n~~a~~~~~~N~~~n~l~~~v~~~~~D~~~~~-~~~~~D~Ii~~  181 (260)
T d2frna1         105 AKPDE--LVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFP-GENIADRILMG  181 (260)
T ss_dssp             CCTTC--EEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCC-CCSCEEEEEEC
T ss_pred             cCCcc--EEEECcceEcHHHHHHHHhCCcEEEEecCCHHHHHHHHHHHHHhCCCceEEEEEcchHHhc-cCCCCCEEEEC
Confidence            45564  89999999999999999876 5888888763211  1122333343   334556666665 35789988864


Q ss_pred             ccccCccChhcHHHHHHHHHhcccCCcEEEEeeccCCh----hhHHHHHHHHHHcCcee
Q 046488          395 RFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDSFFCAK----EDMNDYLEVFKMLKYKK  449 (480)
Q Consensus       395 ~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~f~~~~----edL~~~~~~l~~lGfkk  449 (480)
                      .     +...  ..++.++.++|||||++.+..+....    +..+.+.+.....|++-
T Consensus       182 ~-----p~~~--~~~l~~a~~~l~~gG~lh~~~~~~~~~~~~~~~e~~~~~~~~~g~~v  233 (260)
T d2frna1         182 Y-----VVRT--HEFIPKALSIAKDGAIIHYHNTVPEKLMPREPFETFKRITKEYGYDV  233 (260)
T ss_dssp             C-----CSSG--GGGHHHHHHHEEEEEEEEEEEEEEGGGTTTTTHHHHHHHHHHTTCEE
T ss_pred             C-----CCch--HHHHHHHHhhcCCCCEEEEEeccccccchhhHHHHHHHHHHHcCCce
Confidence            2     1111  23788999999999998665433222    12345667777888764

>d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RNA methyltransferase FtsJ
domain: RNA methyltransferase FtsJ
species: Escherichia coli [TaxId: 562]

Probab=98.17  E-value=9.4e-06  Score=73.32  Aligned_cols=142  Identities=20%  Similarity=0.228  Sum_probs=84.8

Q ss_pred             CCCCCCCeEEEECCCCcHHHHHHhhC---CCEEEEEecCCChhHHHHHHHhCCCCeeeeccc--------CCCCCCCccc
Q 046488          321 IKPGEIRIGLDFSIGTGTFAARMREF---NVTLVSAIINLGAPFNEMIALRGLVPLYITINQ--------RVPFFDNTLD  389 (480)
Q Consensus       321 l~~g~iR~VLDVGCGtG~fAa~Lae~---gV~Vv~vd~d~~~~~~~~iA~rglip~~~~~ae--------~LPFpd~SFD  389 (480)
                      ++++  .+|||+||+.|+|+.++.++   ...+++++.....+.       .....+.++..        ..-+..+.||
T Consensus        20 ~k~~--~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~~~~i-------~~~~~~~~d~~~~~~~~~~~~~~~~~~~D   90 (180)
T d1ej0a_          20 FKPG--MTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPMDPI-------VGVDFLQGDFRDELVMKALLERVGDSKVQ   90 (180)
T ss_dssp             CCTT--CEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCCCCC-------TTEEEEESCTTSHHHHHHHHHHHTTCCEE
T ss_pred             cCCC--CeEEEEeccCCcceEEEEeeccccceEEEeeccccccc-------CCceEeecccccchhhhhhhhhccCccee
Confidence            3444  48999999999999998875   345777775421110       01111222110        0112356799


Q ss_pred             hheecccccCccC--------hhcHHHHHHHHHhcccCCcEEEEeeccCChhhHHHHHHHHHHcCceeeEEEEeeccCCC
Q 046488          390 LIHTTRFLDGWID--------FVLLDFILYDWDRVLRPGGLLWIDSFFCAKEDMNDYLEVFKMLKYKKHKWVVVPKRDKD  461 (480)
Q Consensus       390 lV~ss~vL~h~~d--------~~~l~~~L~EI~RVLKPGG~fiI~~f~~~~edL~~~~~~l~~lGfkkl~W~~~~k~d~~  461 (480)
                      +|+|..+..-...        -.....++.=+.++|||||.|++=-|..  ++...+...++.. |++++...-......
T Consensus        91 lVlSD~ap~~sg~~~~d~~~~~~L~~~~l~~a~~~Lk~gG~fV~K~F~g--~~~~~l~~~l~~~-F~~V~~~KP~aSR~~  167 (180)
T d1ej0a_          91 VVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQG--EGFDEYLREIRSL-FTKVKVRKPDSSRAR  167 (180)
T ss_dssp             EEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESS--TTHHHHHHHHHHH-EEEEEEECCTTSCTT
T ss_pred             EEEecccchhcccchhHHHHHHHHHHHHHHhhhhccCCCCcEEEEEecC--ccHHHHHHHHHhh-cCEEEEECCCCcccC
Confidence            9998765432211        1112345666789999999999876653  3344555555553 877765443222236


Q ss_pred             CcceeEEEEEEeC
Q 046488          462 DREVFFSAVLEKP  474 (480)
Q Consensus       462 ~~E~~lsav~qKP  474 (480)
                      ..|.|+.+.--||
T Consensus       168 SsE~Ylv~~g~Kp  180 (180)
T d1ej0a_         168 SREVYIVATGRKP  180 (180)
T ss_dssp             CCEEEEEEEEECC
T ss_pred             CceEEEEEecCCC
Confidence            7899999888887

>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein PH1915, middle and C-terminal domains
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.16  E-value=1.9e-06  Score=84.18  Aligned_cols=104  Identities=16%  Similarity=0.138  Sum_probs=64.6

Q ss_pred             CCCCCCeEEEECCCCcHHHHHHhhCCC-EEEEEecCCCh--hHHHHHHHhCCC---Ceeeec----ccCCCCCCCccchh
Q 046488          322 KPGEIRIGLDFSIGTGTFAARMREFNV-TLVSAIINLGA--PFNEMIALRGLV---PLYITI----NQRVPFFDNTLDLI  391 (480)
Q Consensus       322 ~~g~iR~VLDVGCGtG~fAa~Lae~gV-~Vv~vd~d~~~--~~~~~iA~rgli---p~~~~~----ae~LPFpd~SFDlV  391 (480)
                      ++|.  +|||+|||+|.++..++..|. .|++++++..+  -+.+.+...|..   .+..++    ...++.....||+|
T Consensus       144 ~~g~--~VLDl~~g~G~~si~~a~~ga~~V~~vD~s~~al~~a~~N~~~ngl~~~~~~~~~d~~~~~~~~~~~~~~fD~V  221 (324)
T d2as0a2         144 QPGD--RVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIV  221 (324)
T ss_dssp             CTTC--EEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred             CCCC--eeecccCcccchhhhhhhcCCcEEEeecCCHHHHHHHHHHHHHcCCCccceeeechhhhhhHHHHhccCCCCch
Confidence            4554  899999999999999998875 68888866311  111223333332   223333    23456678899999


Q ss_pred             eeccc-ccCccC-h----hcHHHHHHHHHhcccCCcEEEEee
Q 046488          392 HTTRF-LDGWID-F----VLLDFILYDWDRVLRPGGLLWIDS  427 (480)
Q Consensus       392 ~ss~v-L~h~~d-~----~~l~~~L~EI~RVLKPGG~fiI~~  427 (480)
                      ++.-- +..-.. .    .....++....++|||||++++..
T Consensus       222 i~DpP~~~~~~~~~~~~~~~y~~l~~~a~~ll~pGG~lv~~s  263 (324)
T d2as0a2         222 VLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCS  263 (324)
T ss_dssp             EECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred             hcCCccccCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEe
Confidence            97321 110000 0    012347888899999999988763

>d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Catechol O-methyltransferase, COMT
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.10  E-value=1.6e-06  Score=80.27  Aligned_cols=110  Identities=25%  Similarity=0.364  Sum_probs=68.9

Q ss_pred             hHHHhcCCCCCCCCeEEEECCCCcHHHHHHhhC---CCEEEEEecCCC--hhHHHHHHHhCC---CCeeeecc-cCCC--
Q 046488          314 LIPEVLDIKPGEIRIGLDFSIGTGTFAARMREF---NVTLVSAIINLG--APFNEMIALRGL---VPLYITIN-QRVP--  382 (480)
Q Consensus       314 ~I~~vL~l~~g~iR~VLDVGCGtG~fAa~Lae~---gV~Vv~vd~d~~--~~~~~~iA~rgl---ip~~~~~a-e~LP--  382 (480)
                      ++..++...  ..++|||+|||+|..+..|++.   +..+++++.+..  ..+...+...|.   +.+..+.+ +-+|  
T Consensus        47 lL~~lv~~~--kpk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~gl~~~i~l~~Gd~~e~l~~l  124 (214)
T d2cl5a1          47 IMDAVIREY--SPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQDKVTILNGASQDLIPQL  124 (214)
T ss_dssp             HHHHHHHHH--CCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGH
T ss_pred             HHHHHHHhh--CCCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcCCCccceeeeccccccccch
Confidence            444444422  2358999999999999999874   568888886531  122223344454   44555542 2222  


Q ss_pred             ---CCCCccchheecccccCccChhcHHHHHHHHHhcccCCcEEEEeecc
Q 046488          383 ---FFDNTLDLIHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDSFF  429 (480)
Q Consensus       383 ---Fpd~SFDlV~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~f~  429 (480)
                         +..+.||+|+..    ++.+.......+.+..|.|||||++++++..
T Consensus       125 ~~~~~~~~~D~ifiD----~~~~~~~~~~~l~~~~~lLkpGGvIv~Ddvl  170 (214)
T d2cl5a1         125 KKKYDVDTLDMVFLD----HWKDRYLPDTLLLEKCGLLRKGTVLLADNVI  170 (214)
T ss_dssp             HHHSCCCCEEEEEEC----SCGGGHHHHHHHHHHTTCEEEEEEEEESCCC
T ss_pred             hhcccccccceeeec----ccccccccHHHHHHHhCccCCCcEEEEeCcC
Confidence               456789999965    3333221133578889999999999888643

>d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein TTHA1280, middle and C-terminal domains
species: Thermus thermophilus [TaxId: 274]

Probab=98.05  E-value=1.2e-06  Score=85.70  Aligned_cols=118  Identities=15%  Similarity=0.020  Sum_probs=70.8

Q ss_pred             CeEEEECCCCcHHHHHHhhCCCEEEEEecCCChhHHH----HHHHhCCCC--eeeec----ccCCCCCCCccchheeccc
Q 046488          327 RIGLDFSIGTGTFAARMREFNVTLVSAIINLGAPFNE----MIALRGLVP--LYITI----NQRVPFFDNTLDLIHTTRF  396 (480)
Q Consensus       327 R~VLDVGCGtG~fAa~Lae~gV~Vv~vd~d~~~~~~~----~iA~rglip--~~~~~----ae~LPFpd~SFDlV~ss~v  396 (480)
                      ++|||++||||.++.+++..+..|++++.+.  .+..    .+...|.-.  ++..+    .+.++...++||+|++.--
T Consensus       147 ~rVLDl~~gtG~~s~~~a~g~~~V~~vD~s~--~al~~a~~n~~~ngl~~~~~i~~d~~~~~~~~~~~~~~fD~Vi~DpP  224 (318)
T d1wxxa2         147 ERALDVFSYAGGFALHLALGFREVVAVDSSA--EALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVLDPP  224 (318)
T ss_dssp             EEEEEETCTTTHHHHHHHHHEEEEEEEESCH--HHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEECCC
T ss_pred             CeeeccCCCCcHHHHHHHhcCCcEEeecchH--HHHHHHHHHHHHcCCCCcceeeccHHHHhhhhHhhhcCCCEEEEcCC
Confidence            5899999999999999987677788887652  3322    223334322  23333    3346667789999997421


Q ss_pred             -ccCcc-----ChhcHHHHHHHHHhcccCCcEEEEeecc--CChhhHH-HHHHHHHHcC
Q 046488          397 -LDGWI-----DFVLLDFILYDWDRVLRPGGLLWIDSFF--CAKEDMN-DYLEVFKMLK  446 (480)
Q Consensus       397 -L~h~~-----d~~~l~~~L~EI~RVLKPGG~fiI~~f~--~~~edL~-~~~~~l~~lG  446 (480)
                       +..-.     .......++..+.++|||||.+++..-.  -..+++. .+.+.+...|
T Consensus       225 ~~~~~~~~~~~~~~~~~~l~~~a~~lLkpGG~Lv~~scs~~~~~~~f~~~v~~a~~~a~  283 (318)
T d1wxxa2         225 AFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCSHHMTEPLFYAMVAEAAQDAH  283 (318)
T ss_dssp             CSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSCHHHHHHHHHHHHHHTT
T ss_pred             ccccchHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCCcccCHHHHHHHHHHHHHHcC
Confidence             11000     0111235788999999999998876421  1223332 2444555555

>d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.02  E-value=2.9e-06  Score=77.55  Aligned_cols=120  Identities=20%  Similarity=0.235  Sum_probs=75.0

Q ss_pred             hcCCCCCCCCeEEEECCCCcHHHHHHhhC--CCEEEEEecCCChhHHHHHHHhCC------CCeeeecccCC-----CCC
Q 046488          318 VLDIKPGEIRIGLDFSIGTGTFAARMREF--NVTLVSAIINLGAPFNEMIALRGL------VPLYITINQRV-----PFF  384 (480)
Q Consensus       318 vL~l~~g~iR~VLDVGCGtG~fAa~Lae~--gV~Vv~vd~d~~~~~~~~iA~rgl------ip~~~~~ae~L-----PFp  384 (480)
                      .|...++.  ++||++||+|..+..++++  +..++++|.+.  .+ ...|.+++      +.++.+....+     .+.
T Consensus        18 ~l~~~~~~--~~lD~t~G~Gghs~~il~~~~~~~vi~~D~d~--~~-l~~a~~~l~~~~~r~~~~~~~f~~~~~~~~~~~   92 (192)
T d1m6ya2          18 FLKPEDEK--IILDCTVGEGGHSRAILEHCPGCRIIGIDVDS--EV-LRIAEEKLKEFSDRVSLFKVSYREADFLLKTLG   92 (192)
T ss_dssp             HHCCCTTC--EEEETTCTTSHHHHHHHHHCTTCEEEEEESCH--HH-HHHHHHHTGGGTTTEEEEECCGGGHHHHHHHTT
T ss_pred             hhCCCCCC--EEEEecCCCcHHHHHHHhcCCCCeEEEeechH--HH-HHHHHHhhccccccccchhHHHhhHHHHHHHcC
Confidence            44555554  8999999999999999885  66888888762  33 33333321      23334432222     344


Q ss_pred             CCccchheecccccCc--c----ChhcHHHHHHHHHhcccCCcEEEEeeccCChhhHHHHHHHHHH
Q 046488          385 DNTLDLIHTTRFLDGW--I----DFVLLDFILYDWDRVLRPGGLLWIDSFFCAKEDMNDYLEVFKM  444 (480)
Q Consensus       385 d~SFDlV~ss~vL~h~--~----d~~~l~~~L~EI~RVLKPGG~fiI~~f~~~~edL~~~~~~l~~  444 (480)
                      .++||.|+....+...  .    ....+...|.++.++|+|||.+++..|....+  +.+..+++.
T Consensus        93 ~~~vdgIl~DlGvSs~Qld~~~r~~~~~~~~L~~a~~~Lk~gG~l~ii~f~s~Ed--r~vk~~f~~  156 (192)
T d1m6ya2          93 IEKVDGILMDLGVSTYQLKGENRELENLKEFLKKAEDLLNPGGRIVVISFHSLED--RIVKETFRN  156 (192)
T ss_dssp             CSCEEEEEEECSCCHHHHHTSHTHHHHHHHHHHHGGGGEEEEEEEEEEESSHHHH--HHHHHHHHH
T ss_pred             CCCcceeeeccchhHhhhhhhhccchhHHHHHHHHHHhcCCCCeeeeeccccHHH--HHHHHHHhh
Confidence            6889998865443211  1    11223568999999999999999887664332  334445544

>d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methyltransferase SPy1538
species: Streptococcus pyogenes [TaxId: 1314]

Probab=97.93  E-value=3.1e-06  Score=73.73  Aligned_cols=94  Identities=12%  Similarity=0.063  Sum_probs=57.4

Q ss_pred             CeEEEECCCCcHHHHHHhhCCC-EEEEEecCCChhHHH---HHHHh-CC---CCeeeeccc-CCCCCCCccchheecccc
Q 046488          327 RIGLDFSIGTGTFAARMREFNV-TLVSAIINLGAPFNE---MIALR-GL---VPLYITINQ-RVPFFDNTLDLIHTTRFL  397 (480)
Q Consensus       327 R~VLDVGCGtG~fAa~Lae~gV-~Vv~vd~d~~~~~~~---~iA~r-gl---ip~~~~~ae-~LPFpd~SFDlV~ss~vL  397 (480)
                      .+|||+|||||.++..++.+|+ .++.++.+.  .+..   +-+.. +.   +.++.+++. .++...+.||+|++.=  
T Consensus        16 ~~vlDl~~GtG~~~iea~~rga~~v~~ve~~~--~a~~~~~~n~~~~~~~~~~~ii~~D~~~~l~~~~~~fDiIf~DP--   91 (152)
T d2esra1          16 GRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNR--KAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTGRFDLVFLDP--   91 (152)
T ss_dssp             CEEEEETCTTCHHHHHHHHTTCCEEEEECCCH--HHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSCEEEEEECC--
T ss_pred             CeEEEcCCccCHHHHHHHHhCcceeeeehhch--hhhhhhhhhhhhcccccchhhhcccccccccccccccceeEech--
Confidence            4899999999999999888876 566766552  2222   11222 22   223334432 3566788999998641  


Q ss_pred             cCccChhcHHHHHHHH--HhcccCCcEEEEe
Q 046488          398 DGWIDFVLLDFILYDW--DRVLRPGGLLWID  426 (480)
Q Consensus       398 ~h~~d~~~l~~~L~EI--~RVLKPGG~fiI~  426 (480)
                       ++.. ......+..+  .++|+|||.+++.
T Consensus        92 -Py~~-~~~~~~l~~i~~~~~L~~~g~iiiE  120 (152)
T d2esra1          92 -PYAK-ETIVATIEALAAKNLLSEQVMVVCE  120 (152)
T ss_dssp             -SSHH-HHHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred             -hhcc-chHHHHHHHHHHCCCcCCCeEEEEE
Confidence             1111 1113344444  4789999998884

>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein Ta1320
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=97.91  E-value=6.3e-06  Score=75.78  Aligned_cols=63  Identities=17%  Similarity=0.137  Sum_probs=44.9

Q ss_pred             CCeEEEECCCCcHHHHHHhhCCC-EEEEEecCCChhHHHHHHHhCC--CCeeeecccCCCCCCCccchheec
Q 046488          326 IRIGLDFSIGTGTFAARMREFNV-TLVSAIINLGAPFNEMIALRGL--VPLYITINQRVPFFDNTLDLIHTT  394 (480)
Q Consensus       326 iR~VLDVGCGtG~fAa~Lae~gV-~Vv~vd~d~~~~~~~~iA~rgl--ip~~~~~ae~LPFpd~SFDlV~ss  394 (480)
                      .++|||+|||||.++..++.+|. .|++++.+   +.....|++..  +.+..++...+   ++.||+|+++
T Consensus        49 Gk~VLDlGcGtG~l~i~a~~~ga~~V~~vDid---~~a~~~ar~N~~~~~~~~~D~~~l---~~~fD~Vi~N  114 (197)
T d1ne2a_          49 GRSVIDAGTGNGILACGSYLLGAESVTAFDID---PDAIETAKRNCGGVNFMVADVSEI---SGKYDTWIMN  114 (197)
T ss_dssp             TSEEEEETCTTCHHHHHHHHTTBSEEEEEESC---HHHHHHHHHHCTTSEEEECCGGGC---CCCEEEEEEC
T ss_pred             CCEEEEeCCCCcHHHHHHHHcCCCcccccccC---HHHHHHHHHccccccEEEEehhhc---CCcceEEEeC
Confidence            35899999999999988888875 58888866   33344454433  34555555554   4789999986

>d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: COMT domain-containing protein 1, COMTD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.86  E-value=7e-06  Score=76.35  Aligned_cols=97  Identities=16%  Similarity=0.109  Sum_probs=64.3

Q ss_pred             CCeEEEECCCCcHHHHHHhhC---CCEEEEEecCCChh--HHHHHHHhCC---CCeeeec-ccCCC-----CCCCccchh
Q 046488          326 IRIGLDFSIGTGTFAARMREF---NVTLVSAIINLGAP--FNEMIALRGL---VPLYITI-NQRVP-----FFDNTLDLI  391 (480)
Q Consensus       326 iR~VLDVGCGtG~fAa~Lae~---gV~Vv~vd~d~~~~--~~~~iA~rgl---ip~~~~~-ae~LP-----Fpd~SFDlV  391 (480)
                      .++||+||||+|..+..+++.   +-.+++++.+....  ++..+...|.   +....+. .+.++     ..+++||+|
T Consensus        60 ~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag~~~~i~~~~Gda~e~l~~~~~~~~~~~fD~i  139 (219)
T d2avda1          60 AKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTFDVA  139 (219)
T ss_dssp             CCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCEEEE
T ss_pred             CCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcCccceEEEEEeehhhcchhhhhhcccCCccEE
Confidence            358999999999999999874   55788888764221  2223333343   3334444 22232     347889999


Q ss_pred             eecccccCccChhcHHHHHHHHHhcccCCcEEEEeec
Q 046488          392 HTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDSF  428 (480)
Q Consensus       392 ~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~f  428 (480)
                      +...    ....  ....+..+.+.|||||.+++++.
T Consensus       140 fiD~----dk~~--y~~~~~~~~~lL~~GGvii~Dn~  170 (219)
T d2avda1         140 VVDA----DKEN--CSAYYERCLQLLRPGGILAVLRV  170 (219)
T ss_dssp             EECS----CSTT--HHHHHHHHHHHEEEEEEEEEECC
T ss_pred             EEeC----CHHH--HHHHHHHHHHHhcCCcEEEEeCC
Confidence            9643    2222  24578999999999999999863

>d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein PH1948
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=97.85  E-value=0.00012  Score=66.53  Aligned_cols=113  Identities=6%  Similarity=-0.014  Sum_probs=61.3

Q ss_pred             CeEEEECCCCcHHHHHHhhCCC-EEEEEecCCChhHHHHHHHhC----CCC--eeeecccCCCCCCCccchheecccccC
Q 046488          327 RIGLDFSIGTGTFAARMREFNV-TLVSAIINLGAPFNEMIALRG----LVP--LYITINQRVPFFDNTLDLIHTTRFLDG  399 (480)
Q Consensus       327 R~VLDVGCGtG~fAa~Lae~gV-~Vv~vd~d~~~~~~~~iA~rg----lip--~~~~~ae~LPFpd~SFDlV~ss~vL~h  399 (480)
                      .+|||+|||||.++..++.+|. .+++++.+.   .....+.+.    .+.  +...+...+   +..||+|++.=-+..
T Consensus        48 ~~vLDlg~GtG~l~i~a~~~g~~~v~~vdi~~---~~~~~a~~N~~~~~~~~~~~~~d~~~~---~~~fD~Vi~nPP~~~  121 (201)
T d1wy7a1          48 KVVADLGAGTGVLSYGALLLGAKEVICVEVDK---EAVDVLIENLGEFKGKFKVFIGDVSEF---NSRVDIVIMNPPFGS  121 (201)
T ss_dssp             CEEEEETCTTCHHHHHHHHTTCSEEEEEESCH---HHHHHHHHHTGGGTTSEEEEESCGGGC---CCCCSEEEECCCCSS
T ss_pred             CEEEECcCcchHHHHHHHHcCCCEEEEEcCcH---HHHHHHHHHHHHcCCCceEEECchhhh---CCcCcEEEEcCcccc
Confidence            4899999999999998888874 788888762   222233321    222  222333333   567999998643322


Q ss_pred             ccChhcHHHHHHHHHhcccCCcEEEEeeccCChhhHHHHHHHHHHcCceee
Q 046488          400 WIDFVLLDFILYDWDRVLRPGGLLWIDSFFCAKEDMNDYLEVFKMLKYKKH  450 (480)
Q Consensus       400 ~~d~~~l~~~L~EI~RVLKPGG~fiI~~f~~~~edL~~~~~~l~~lGfkkl  450 (480)
                      ......    ...+.+.+.+++.++..+.. .......+.......|+...
T Consensus       122 ~~~~~d----~~~l~~~~~~~~~v~~ih~~-~~~~~~~i~~~~~~~g~~i~  167 (201)
T d1wy7a1         122 QRKHAD----RPFLLKAFEISDVVYSIHLA-KPEVRRFIEKFSWEHGFVVT  167 (201)
T ss_dssp             SSTTTT----HHHHHHHHHHCSEEEEEEEC-CHHHHHHHHHHHHHTTEEEE
T ss_pred             cccccc----HHHHHHHHhhcccchhcccc-hHHHHHHHHHHHhhcCceEE
Confidence            222111    11122344456655544322 11222334556677777543

>d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Putative methyltransferase Atu0340
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.84  E-value=1.1e-05  Score=79.06  Aligned_cols=102  Identities=19%  Similarity=0.040  Sum_probs=63.8

Q ss_pred             CeEEEECCCCcHHHHHHhhCCCEEEEEecCCChhHHH----HHHHhCCC----Ceeeec----ccCCCCCCCccchheec
Q 046488          327 RIGLDFSIGTGTFAARMREFNVTLVSAIINLGAPFNE----MIALRGLV----PLYITI----NQRVPFFDNTLDLIHTT  394 (480)
Q Consensus       327 R~VLDVGCGtG~fAa~Lae~gV~Vv~vd~d~~~~~~~----~iA~rgli----p~~~~~----ae~LPFpd~SFDlV~ss  394 (480)
                      ++|||+.||||.|+..++..|..|++++.+  ..+..    .++..+.-    .++.++    ..++....+.||+|++.
T Consensus       134 ~rVLdlf~~tG~~sl~aa~~GA~V~~VD~s--~~al~~a~~N~~ln~~~~~~~~~i~~D~~~~l~~~~~~~~~fD~IilD  211 (309)
T d2igta1         134 LKVLNLFGYTGVASLVAAAAGAEVTHVDAS--KKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDIILTD  211 (309)
T ss_dssp             CEEEEETCTTCHHHHHHHHTTCEEEEECSC--HHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEEEEC
T ss_pred             CeEEEecCCCcHHHHHHHhCCCeEEEEeCh--HHHHHHHHHhhhhhcccCCcEEEEeCCHHHhHHHHhhcCCCCCEEEEC
Confidence            489999999999999999999998887754  33332    22333432    233333    22233456889999973


Q ss_pred             ---cccc----CccChhcHHHHHHHHHhcccCCcEEEEeeccC
Q 046488          395 ---RFLD----GWIDFVLLDFILYDWDRVLRPGGLLWIDSFFC  430 (480)
Q Consensus       395 ---~vL~----h~~d~~~l~~~L~EI~RVLKPGG~fiI~~f~~  430 (480)
                         +.-.    .|.-...+..++..+.++|+|||.+++..-.+
T Consensus       212 PP~f~~~~~~~~~~~~~~~~~l~~~~~~ll~~~g~~ll~t~~s  254 (309)
T d2igta1         212 PPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTAYS  254 (309)
T ss_dssp             CCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEECC
T ss_pred             CCcccccccchhHHHHHHHHHHHHHHHHhcCCCCCEEEEecCC
Confidence               2211    11111223456677889999999877764333

>d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Methyltransferase 10 domain
domain: Methyltransferase 10 domain containing protein METT10D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.76  E-value=0.00013  Score=68.48  Aligned_cols=140  Identities=8%  Similarity=0.012  Sum_probs=81.6

Q ss_pred             hhHHHhcCCC---CCCCCeEEEECCCCcHHHHHHhhC--CCEEEEEecCCChh--HHHHHHHhCCC---Ceeeec-ccC-
Q 046488          313 FLIPEVLDIK---PGEIRIGLDFSIGTGTFAARMREF--NVTLVSAIINLGAP--FNEMIALRGLV---PLYITI-NQR-  380 (480)
Q Consensus       313 ~~I~~vL~l~---~g~iR~VLDVGCGtG~fAa~Lae~--gV~Vv~vd~d~~~~--~~~~iA~rgli---p~~~~~-ae~-  380 (480)
                      +++.+++...   .....+|||+|||+|..+..|+.+  +..+++++++..+-  +...+...++-   ...... ... 
T Consensus        46 ~~i~~l~~~~~~~~~~~~~~LDiGtGsg~I~~~l~~~~~~~~~~~~Di~~~al~~A~~N~~~n~l~~~~~~~~~~~~~~~  125 (250)
T d2h00a1          46 HWVEDLIGHQDSDKSTLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLL  125 (250)
T ss_dssp             HHHHHHHCCCCGGGCCCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSS
T ss_pred             HHHHHHhhhhccCccccceEEEeCCCchHHHHHHHHhCCCccccceecCHHHHHHHHHHHHHhCCCcceeeeeeccHHhh
Confidence            3555555421   133458999999999999998876  78888988763211  11222222221   122221 111 


Q ss_pred             ----CCCCCCccchheecccccCcc----------------------Ch----------hcHHHHHHHHHhcccCCcEEE
Q 046488          381 ----VPFFDNTLDLIHTTRFLDGWI----------------------DF----------VLLDFILYDWDRVLRPGGLLW  424 (480)
Q Consensus       381 ----LPFpd~SFDlV~ss~vL~h~~----------------------d~----------~~l~~~L~EI~RVLKPGG~fi  424 (480)
                          ....++.||+|+|+==++.-.                      +.          .-+..++.|..+.++..|++.
T Consensus       126 ~~~~~~~~~~~fD~ivsNPPY~~~~e~~~~~~~~k~~~~~p~~~~~~~~~el~~~gGe~~F~~~ii~es~~~~~~~g~~t  205 (250)
T d2h00a1         126 MDALKEESEIIYDFCMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFVKRIIHDSLQLKKRLRWYS  205 (250)
T ss_dssp             TTTSTTCCSCCBSEEEECCCCC-------------------------CTTTTHHHHTHHHHHHHHHHHHHHHGGGBSCEE
T ss_pred             hhhhhhcccCceeEEEecCcccccchhhhccccccccccCchhhcCccccccccccchhhHHHHHHHHHHHHhhcCcEEE
Confidence                123467899999963222100                      00          013456778888999999875


Q ss_pred             EeeccCChhhHHHHHHHHHHcCceeeEEEE
Q 046488          425 IDSFFCAKEDMNDYLEVFKMLKYKKHKWVV  454 (480)
Q Consensus       425 I~~f~~~~edL~~~~~~l~~lGfkkl~W~~  454 (480)
                      ..  ....+.++.+...++..|+..+++.-
T Consensus       206 ~~--ig~~~~l~~i~~~L~~~g~~~i~~ie  233 (250)
T d2h00a1         206 CM--LGKKCSLAPLKEELRIQGVPKVTYTE  233 (250)
T ss_dssp             EE--ESSTTSHHHHHHHHHHTTCSEEEEEE
T ss_pred             EE--ecchhhHHHHHHHHHHcCCCeEEEEE
Confidence            32  12234566777888999998776543

>d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methyltransferase TTHA0928
species: Thermus thermophilus [TaxId: 274]

Probab=97.73  E-value=2.4e-05  Score=69.44  Aligned_cols=92  Identities=12%  Similarity=0.049  Sum_probs=55.4

Q ss_pred             eEEEECCCCcHHHHHHhhCCCEEEEEecCCChhHHH----HHHHhCCCC-eeeecc----cCCCCCCCccchheeccccc
Q 046488          328 IGLDFSIGTGTFAARMREFNVTLVSAIINLGAPFNE----MIALRGLVP-LYITIN----QRVPFFDNTLDLIHTTRFLD  398 (480)
Q Consensus       328 ~VLDVGCGtG~fAa~Lae~gV~Vv~vd~d~~~~~~~----~iA~rglip-~~~~~a----e~LPFpd~SFDlV~ss~vL~  398 (480)
                      +|||+|||+|.++..++.+|..++.++.+.  .+..    .+...+.-. .....+    .........||+|++.=-+.
T Consensus        44 ~vLDl~~G~G~~~i~a~~~ga~vv~vD~~~--~a~~~~~~N~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~If~DPPY~  121 (171)
T d1ws6a1          44 RFLDPFAGSGAVGLEAASEGWEAVLVEKDP--EAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFMAPPYA  121 (171)
T ss_dssp             EEEEETCSSCHHHHHHHHTTCEEEEECCCH--HHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEECCCTT
T ss_pred             eEEEeccccchhhhhhhhccchhhhcccCH--HHHhhhhHHHHhhccccceeeeehhcccccccccCCccceeEEccccc
Confidence            899999999999999999999988776552  2222    222223221 222221    22345567899998741111


Q ss_pred             CccChhcHHHHHHHH--HhcccCCcEEEEe
Q 046488          399 GWIDFVLLDFILYDW--DRVLRPGGLLWID  426 (480)
Q Consensus       399 h~~d~~~l~~~L~EI--~RVLKPGG~fiI~  426 (480)
                       . +.   ...+.++  ...|+|||++++.
T Consensus       122 -~-~~---~~~l~~l~~~~ll~~~g~ivie  146 (171)
T d1ws6a1         122 -M-DL---AALFGELLASGLVEAGGLYVLQ  146 (171)
T ss_dssp             -S-CT---THHHHHHHHHTCEEEEEEEEEE
T ss_pred             -c-CH---HHHHHHHHHcCCcCCCeEEEEE
Confidence             1 11   1233333  3589999998874

>d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein SMu776, middle and C-terminal domains
species: Streptococcus mutans [TaxId: 1309]

Probab=97.73  E-value=1.5e-05  Score=77.80  Aligned_cols=105  Identities=12%  Similarity=-0.005  Sum_probs=64.4

Q ss_pred             CCCCCCCeEEEECCCCcHHHHHHhhCCC-EEEEEecCCChh--HHHHHHHhCCC----Ceeeecc----cCCCCCCCccc
Q 046488          321 IKPGEIRIGLDFSIGTGTFAARMREFNV-TLVSAIINLGAP--FNEMIALRGLV----PLYITIN----QRVPFFDNTLD  389 (480)
Q Consensus       321 l~~g~iR~VLDVGCGtG~fAa~Lae~gV-~Vv~vd~d~~~~--~~~~iA~rgli----p~~~~~a----e~LPFpd~SFD  389 (480)
                      +.+|  ++|||+.||||.|+..++..|. .|++++++..+.  +.+.++..+.-    .++.+++    ..+.-..+.||
T Consensus       142 ~~~g--~~VLdlf~~~G~~sl~aa~~ga~~V~~vD~s~~a~~~a~~N~~~n~l~~~~~~~i~~d~~~~l~~~~~~~~~fD  219 (317)
T d2b78a2         142 SAAG--KTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYD  219 (317)
T ss_dssp             TTBT--CEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEE
T ss_pred             hhCC--CceeecCCCCcHHHHHHHhCCCceEEEecCCHHHHHHHHHHHHHhcccCcceEEEEccHHHHHHHHHhhcCCCC
Confidence            4445  4899999999999999888776 688888764322  22233344431    1233332    23333567899


Q ss_pred             hheec---cccc--C-ccChhcHHHHHHHHHhcccCCcEEEEee
Q 046488          390 LIHTT---RFLD--G-WIDFVLLDFILYDWDRVLRPGGLLWIDS  427 (480)
Q Consensus       390 lV~ss---~vL~--h-~~d~~~l~~~L~EI~RVLKPGG~fiI~~  427 (480)
                      +|++.   +.-.  . +.-......++....++|+|||+++++.
T Consensus       220 ~Ii~DPP~f~~~~~~~~~~~~~~~~L~~~a~~ll~pgG~l~~~s  263 (317)
T d2b78a2         220 IIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIAST  263 (317)
T ss_dssp             EEEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             EEEEcChhhccchhHHHHHHHHHHHHHHHHHHHcCCCCEEEEEe
Confidence            99973   1100  0 0000112458888999999999998864

>d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Caffeoyl-CoA O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=97.43  E-value=7.5e-05  Score=69.65  Aligned_cols=96  Identities=13%  Similarity=0.011  Sum_probs=63.2

Q ss_pred             CCeEEEECCCCcHHHHHHhhC---CCEEEEEecCCCh--hHHHHHHHhCC---CCeeeec-ccCCC------CCCCccch
Q 046488          326 IRIGLDFSIGTGTFAARMREF---NVTLVSAIINLGA--PFNEMIALRGL---VPLYITI-NQRVP------FFDNTLDL  390 (480)
Q Consensus       326 iR~VLDVGCGtG~fAa~Lae~---gV~Vv~vd~d~~~--~~~~~iA~rgl---ip~~~~~-ae~LP------Fpd~SFDl  390 (480)
                      .++||++|+++|..+..|++.   +..+++++.+...  .+...+++.|.   +.+..+. .+.||      ..+++||+
T Consensus        60 ~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g~~~~i~~~~g~a~~~L~~l~~~~~~~~~fD~  139 (227)
T d1susa1          60 AKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSYDF  139 (227)
T ss_dssp             CCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCGGGTTCBSE
T ss_pred             CCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhccccceeeeehHHHHHHHHHHhccccCCceeE
Confidence            358999999999999988852   5678888876422  12223333343   3333443 22222      24678999


Q ss_pred             heecccccCccChhcHHHHHHHHHhcccCCcEEEEee
Q 046488          391 IHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDS  427 (480)
Q Consensus       391 V~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~  427 (480)
                      |+..    ++...-  ...+..+.+.|+|||.+++++
T Consensus       140 iFiD----a~k~~y--~~~~e~~~~ll~~gGiii~DN  170 (227)
T d1susa1         140 IFVD----ADKDNY--LNYHKRLIDLVKVGGVIGYDN  170 (227)
T ss_dssp             EEEC----SCSTTH--HHHHHHHHHHBCTTCCEEEET
T ss_pred             EEec----cchhhh--HHHHHHHHhhcCCCcEEEEcc
Confidence            9964    333322  468889999999999999985

>d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Thermotoga maritima [TaxId: 2336]

Probab=97.43  E-value=4.4e-05  Score=73.21  Aligned_cols=119  Identities=12%  Similarity=0.108  Sum_probs=65.5

Q ss_pred             CCeEEEECCCCcHHHHHHhhC-CCEEEEEecCCChh--HHHHHHHhCCCC---eeeec-ccCCCCCCCccchheecc---
Q 046488          326 IRIGLDFSIGTGTFAARMREF-NVTLVSAIINLGAP--FNEMIALRGLVP---LYITI-NQRVPFFDNTLDLIHTTR---  395 (480)
Q Consensus       326 iR~VLDVGCGtG~fAa~Lae~-gV~Vv~vd~d~~~~--~~~~iA~rglip---~~~~~-ae~LPFpd~SFDlV~ss~---  395 (480)
                      ..+|||+|||+|..+..+++. +..++++|.+..+-  +...+...+...   +..++ .+.++...+.||+|+|+=   
T Consensus       111 ~~~vld~g~GsG~i~~~la~~~~~~v~a~Dis~~Al~~A~~Na~~~~~~~~~~i~~~~~~~~~~~~~~~fDlIVsNPPYI  190 (271)
T d1nv8a_         111 IKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPFKEKFASIEMILSNPPYV  190 (271)
T ss_dssp             CCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGGGGGTTTCCEEEECCCCB
T ss_pred             ccEEEEeeeeeehhhhhhhhcccceeeechhhhhHHHHHHHHHHHcCCCceeEEeecccccccccccCcccEEEEccccc
Confidence            457999999999998888765 67788887653211  111222223211   22232 445555568999999861   


Q ss_pred             ----cccC---ccC-------hhcHHHHHHHHHhcccCCcEEEEeeccCChhhHHHHHHHHHHcCc
Q 046488          396 ----FLDG---WID-------FVLLDFILYDWDRVLRPGGLLWIDSFFCAKEDMNDYLEVFKMLKY  447 (480)
Q Consensus       396 ----vL~h---~~d-------~~~l~~~L~EI~RVLKPGG~fiI~~f~~~~edL~~~~~~l~~lGf  447 (480)
                          .+..   +.+       .+-+..+-.=+.+.|+|||++++-.-..   +.+.+.++++..||
T Consensus       191 ~~~~~l~~~~~~EP~~AL~gg~dGl~~~r~i~~~~L~~~G~l~~Eig~~---Q~~~v~~l~~~~g~  253 (271)
T d1nv8a_         191 KSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEIGED---QVEELKKIVSDTVF  253 (271)
T ss_dssp             CGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEECCTT---CHHHHTTTSTTCEE
T ss_pred             CcccccceeeeeccccccccccchHHHHHHHHHHhcCCCCEEEEEECHH---HHHHHHHHHHhCCE
Confidence                1110   110       1112222222568899999988853222   22344455555555

>d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.42  E-value=0.0015  Score=62.08  Aligned_cols=159  Identities=17%  Similarity=0.046  Sum_probs=88.6

Q ss_pred             hhhhHHHhcCCCCCCCCeEEEECCCCcHHHHHHhhC--CCEEEEEecCCCh-hHHHHHHHhCCCCeeeec--ccC--CCC
Q 046488          311 ADFLIPEVLDIKPGEIRIGLDFSIGTGTFAARMREF--NVTLVSAIINLGA-PFNEMIALRGLVPLYITI--NQR--VPF  383 (480)
Q Consensus       311 ad~~I~~vL~l~~g~iR~VLDVGCGtG~fAa~Lae~--gV~Vv~vd~d~~~-~~~~~iA~rglip~~~~~--ae~--LPF  383 (480)
                      +...+..+|...++.  +|||+.+|.|+=+..|++.  +..+++.+.+... .......++-++..+...  ...  .+.
T Consensus        90 sS~l~~~~L~~~~g~--~vLD~CAaPGgKt~~la~l~~~~~i~a~d~~~~R~~~l~~~~~r~g~~~~~~~~~~~~~~~~~  167 (284)
T d1sqga2          90 SAQGCMTWLAPQNGE--HILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQWC  167 (284)
T ss_dssp             HHHTHHHHHCCCTTC--EEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCTHHHH
T ss_pred             cccccccccCccccc--eeEeccCccccchhhhhhhhhhhhhhhhhcchhhhhhHhhhhhcccccceeeeccccccchhc
Confidence            344555677766665  8999999999988877764  3467777766432 122223334334332211  111  123


Q ss_pred             CCCccchhee----c--ccccCccC-------h------hcHHHHHHHHHhcccCCcEEEEee-ccCChhhHHHHHHHHH
Q 046488          384 FDNTLDLIHT----T--RFLDGWID-------F------VLLDFILYDWDRVLRPGGLLWIDS-FFCAKEDMNDYLEVFK  443 (480)
Q Consensus       384 pd~SFDlV~s----s--~vL~h~~d-------~------~~l~~~L~EI~RVLKPGG~fiI~~-f~~~~edL~~~~~~l~  443 (480)
                      ..+.||.|++    +  .++..-++       .      ..-..+|....+.|||||+++.+. -..+.|.-+.+..+++
T Consensus       168 ~~~~fd~IL~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~~~ENE~vv~~~l~  247 (284)
T d1sqga2         168 GEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVLPEENSLQIKAFLQ  247 (284)
T ss_dssp             TTCCEEEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCCCGGGTHHHHHHHHH
T ss_pred             ccccccEEEEeccccccCccccccchhhccccchhhHHHHHHHHHHHHHHHhcCCCceEEEeeecCchhhCHHHHHHHHH
Confidence            4678999985    2  23322111       0      011457888999999999988774 2222333333445555


Q ss_pred             Hc-CceeeE--------EEEeeccCCCCcceeEEEEEEe
Q 046488          444 ML-KYKKHK--------WVVVPKRDKDDREVFFSAVLEK  473 (480)
Q Consensus       444 ~l-Gfkkl~--------W~~~~k~d~~~~E~~lsav~qK  473 (480)
                      +. +|+.+.        +...+..  ...+.|+.|+++|
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~~P~~--~~~dGFF~A~l~K  284 (284)
T d1sqga2         248 RTADAELCETGTPEQPGKQNLPGA--EEGDGFFYAKLIK  284 (284)
T ss_dssp             HCTTCEECSSBCSSSBSEEECCCT--TSCCSEEEEEEEC
T ss_pred             hCCCcEEecCCCCCCCcEEECCCC--CCcccEEEEEEEC
Confidence            52 344322        2222222  2356799999997

>d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Hypothetical methyltransferase PH1374
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=97.36  E-value=0.0014  Score=63.38  Aligned_cols=137  Identities=17%  Similarity=0.181  Sum_probs=77.9

Q ss_pred             hhhhhHHHhcCCCCCCCCeEEEECCCCcHHHHHHhhC---CCEEEEEecCCCh--hHHHHHHHhCCCCeee--ecccCCC
Q 046488          310 TADFLIPEVLDIKPGEIRIGLDFSIGTGTFAARMREF---NVTLVSAIINLGA--PFNEMIALRGLVPLYI--TINQRVP  382 (480)
Q Consensus       310 ~ad~~I~~vL~l~~g~iR~VLDVGCGtG~fAa~Lae~---gV~Vv~vd~d~~~--~~~~~iA~rglip~~~--~~ae~LP  382 (480)
                      .+..+...+|...+|+  +|||+.+|.|+=+..+++.   ...+++.+.+...  ........-|......  .+...++
T Consensus       103 ~aS~l~~~~l~~~~g~--~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~~~~i~~~~~d~~~~~  180 (313)
T d1ixka_         103 ASSMYPPVALDPKPGE--IVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIG  180 (313)
T ss_dssp             HHHHHHHHHHCCCTTC--EEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGG
T ss_pred             ccccchhhcccCCccc--eeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHHHHhhccccccccccccc
Confidence            3444566777777776  8999999999977666643   3456666554211  1111222334433332  3455667


Q ss_pred             CCCCccchhee----c--ccccCcc------Ch-------hcHHHHHHHHHhcccCCcEEEEeec-cCChhhHHHHHHHH
Q 046488          383 FFDNTLDLIHT----T--RFLDGWI------DF-------VLLDFILYDWDRVLRPGGLLWIDSF-FCAKEDMNDYLEVF  442 (480)
Q Consensus       383 Fpd~SFDlV~s----s--~vL~h~~------d~-------~~l~~~L~EI~RVLKPGG~fiI~~f-~~~~edL~~~~~~l  442 (480)
                      ..+..||.|+.    +  .++..-+      ..       ..-..+|....+.|||||+++.+.- ..+.|.-+.+..++
T Consensus       181 ~~~~~fD~ILvDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~gG~lVYsTCSl~~eENE~VV~~~L  260 (313)
T d1ixka_         181 ELNVEFDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSLEPEENEFVIQWAL  260 (313)
T ss_dssp             GGCCCEEEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCCGGGTHHHHHHHH
T ss_pred             cccccccEEEEccccccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeCCCcEEEEeeccCChHhHHHHHHHHH
Confidence            77889999985    2  2221111      01       1113478889999999999887742 22223223344566


Q ss_pred             HHcCce
Q 046488          443 KMLKYK  448 (480)
Q Consensus       443 ~~lGfk  448 (480)
                      ++.+++
T Consensus       261 ~~~~~~  266 (313)
T d1ixka_         261 DNFDVE  266 (313)
T ss_dssp             HHSSEE
T ss_pred             hcCCCE
Confidence            665554

>d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Putative spermidine synthetase PF0127 (SpeE)
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=97.33  E-value=0.00088  Score=63.70  Aligned_cols=121  Identities=12%  Similarity=0.041  Sum_probs=68.9

Q ss_pred             CCCeEEEECCCCcHHHHHHhhCCC-EEEEEecCCChhHHHHHHHhC-----------------CCCeeeecccCCCCCCC
Q 046488          325 EIRIGLDFSIGTGTFAARMREFNV-TLVSAIINLGAPFNEMIALRG-----------------LVPLYITINQRVPFFDN  386 (480)
Q Consensus       325 ~iR~VLDVGCGtG~fAa~Lae~gV-~Vv~vd~d~~~~~~~~iA~rg-----------------lip~~~~~ae~LPFpd~  386 (480)
                      +.++||-+|+|.|..+..+.+++. .+..+++|   +....++++-                 .+.++.+++..+--.++
T Consensus        72 ~p~~vLiiG~G~G~~~~~~l~~~~~~v~~VEiD---~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~  148 (276)
T d1mjfa_          72 KPKRVLVIGGGDGGTVREVLQHDVDEVIMVEID---EDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNNR  148 (276)
T ss_dssp             CCCEEEEEECTTSHHHHHHTTSCCSEEEEEESC---HHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHHCC
T ss_pred             CCceEEEecCCchHHHHHHHHhCCceEEEecCC---HHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHHHhccC
Confidence            456899999999999999887743 45555554   3444444320                 12234444222111367


Q ss_pred             ccchheecccccCccChhc--HHHHHHHHHhcccCCcEEEEee--ccCChhhHHHHHHHHHHcCceee
Q 046488          387 TLDLIHTTRFLDGWIDFVL--LDFILYDWDRVLRPGGLLWIDS--FFCAKEDMNDYLEVFKMLKYKKH  450 (480)
Q Consensus       387 SFDlV~ss~vL~h~~d~~~--l~~~L~EI~RVLKPGG~fiI~~--f~~~~edL~~~~~~l~~lGfkkl  450 (480)
                      +||+|+... .........  -..++..+.|.|+|||.+++-.  .+...+.+..+...++.. |..+
T Consensus       149 ~yDvIi~D~-~~~~~~~~~L~t~eF~~~~~~~L~~~Gv~v~q~~s~~~~~~~~~~~~~tl~~~-F~~v  214 (276)
T d1mjfa_         149 GFDVIIADS-TDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQAGSVYLFTDELISAYKEMKKV-FDRV  214 (276)
T ss_dssp             CEEEEEEEC-CCCC-----TTSHHHHHHHHHHEEEEEEEEEEEEETTTSHHHHHHHHHHHHHH-CSEE
T ss_pred             CCCEEEEeC-CCCCCCcccccCHHHHHhhHhhcCCCceEEEecCCcchhHHHHHHHHHHHHhh-CCee
Confidence            899999643 222221110  0358999999999999987742  222233344444445554 5544

>d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermus thermophilus [TaxId: 274]

Probab=97.31  E-value=0.00033  Score=67.99  Aligned_cols=125  Identities=14%  Similarity=0.044  Sum_probs=70.9

Q ss_pred             CCCeEEEECCCCcHHHHHHhhC-C-CEEEEEecCCChhHHHHHHHhC------------CCCeeeecccC-CCCCCCccc
Q 046488          325 EIRIGLDFSIGTGTFAARMREF-N-VTLVSAIINLGAPFNEMIALRG------------LVPLYITINQR-VPFFDNTLD  389 (480)
Q Consensus       325 ~iR~VLDVGCGtG~fAa~Lae~-g-V~Vv~vd~d~~~~~~~~iA~rg------------lip~~~~~ae~-LPFpd~SFD  389 (480)
                      ..++||.||.|.|..+..+.++ + ..+..++++   +...+++++-            .+.++.+++.. +.-.++.||
T Consensus        77 ~pk~VLiiG~G~G~~~~~ll~~~~~~~v~~VEiD---~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yD  153 (312)
T d1uira_          77 EPKRVLIVGGGEGATLREVLKHPTVEKAVMVDID---GELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYD  153 (312)
T ss_dssp             CCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESC---HHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEE
T ss_pred             CcceEEEeCCCchHHHHHHHhcCCcceEEEecCC---HHHHHHHHhcCcccccCccCCCceEEEEchHHHHhhhcCCccc
Confidence            4578999999999999998876 3 356666655   3333333321            23344554221 223467899


Q ss_pred             hheecccccCccC---hhc--HHHHHHHHHhcccCCcEEEEee--ccCChhhH-HHHHHHHHHcCceee-EEEE
Q 046488          390 LIHTTRFLDGWID---FVL--LDFILYDWDRVLRPGGLLWIDS--FFCAKEDM-NDYLEVFKMLKYKKH-KWVV  454 (480)
Q Consensus       390 lV~ss~vL~h~~d---~~~--l~~~L~EI~RVLKPGG~fiI~~--f~~~~edL-~~~~~~l~~lGfkkl-~W~~  454 (480)
                      +|+.... ..+..   ...  -..++..+.|.|+|||.+++-.  .....+++ ..+...++.. |..+ .|..
T Consensus       154 vIi~D~~-dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gvlv~~~~s~~~~~~~~~~~i~~tl~~~-F~~V~~y~~  225 (312)
T d1uira_         154 VVIIDLT-DPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQTGMILLTHHRVHPVVHRTVREA-FRYVRSYKN  225 (312)
T ss_dssp             EEEEECC-CCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEEEEECC---CHHHHHHHHHHTT-CSEEEEEEE
T ss_pred             EEEEeCC-CcccccchhhhhhhHHHHHHHHHhcCCCceEEEecCCcccchHHHHHHHHHHHHHh-CceEEEEEe
Confidence            9996431 11110   000  1358999999999999987632  22222233 4455566665 4433 3443

>d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methylase YhhF
species: Escherichia coli [TaxId: 562]

Probab=97.30  E-value=0.00018  Score=64.18  Aligned_cols=94  Identities=10%  Similarity=0.040  Sum_probs=57.1

Q ss_pred             CeEEEECCCCcHHHHHHhhCCCE-EEEEecCCChhHHH----HHHHhCCCC--eeeec-ccCCCCCCCccchheeccccc
Q 046488          327 RIGLDFSIGTGTFAARMREFNVT-LVSAIINLGAPFNE----MIALRGLVP--LYITI-NQRVPFFDNTLDLIHTTRFLD  398 (480)
Q Consensus       327 R~VLDVGCGtG~fAa~Lae~gV~-Vv~vd~d~~~~~~~----~iA~rglip--~~~~~-ae~LPFpd~SFDlV~ss~vL~  398 (480)
                      .+|||++||||.++..++++|+. |+.++.+.  .+..    .++.-+.-.  .+..+ ..-+.-....||+|++.=   
T Consensus        45 ~~vLDlfaGsG~~giealsrGa~~v~~VE~~~--~a~~~~k~N~~~~~~~~~~ii~~d~~~~l~~~~~~fDlIf~DP---  119 (183)
T d2fpoa1          45 AQCLDCFAGSGALGLEALSRYAAGATLIEMDR--AVSQQLIKNLATLKAGNARVVNSNAMSFLAQKGTPHNIVFVDP---  119 (183)
T ss_dssp             CEEEETTCTTCHHHHHHHHTTCSEEEEECSCH--HHHHHHHHHHHHTTCCSEEEECSCHHHHHSSCCCCEEEEEECC---
T ss_pred             hhhhhhhccccceeeeEEecCcceeEEEEEee--chhhHHHHHHhhccccceeeeeecccccccccccccCEEEEcC---
Confidence            37999999999999999999874 66666542  3322    222222212  22222 333445678999999742   


Q ss_pred             CccChhcHHHHHHHHH--hcccCCcEEEEe
Q 046488          399 GWIDFVLLDFILYDWD--RVLRPGGLLWID  426 (480)
Q Consensus       399 h~~d~~~l~~~L~EI~--RVLKPGG~fiI~  426 (480)
                      ++... ..+.++.-+.  .+|+|+|.+++-
T Consensus       120 PY~~~-~~~~~l~~l~~~~~L~~~~iIiiE  148 (183)
T d2fpoa1         120 PFRRG-LLEETINLLEDNGWLADEALIYVE  148 (183)
T ss_dssp             SSSTT-THHHHHHHHHHTTCEEEEEEEEEE
T ss_pred             ccccc-hHHHHHHHHHHCCCCCCCeEEEEE
Confidence            12211 1234555544  479999998884

>d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: DNA methylase TaqI, N-terminal domain
domain: DNA methylase TaqI, N-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=97.27  E-value=0.00041  Score=61.53  Aligned_cols=105  Identities=19%  Similarity=0.099  Sum_probs=61.1

Q ss_pred             hHHHhcCCCCCCCCeEEEECCCCcHHHHHHhhC---CCEEEEEecCCChhHHHHHHHhCCCCeeeecccCCCCCCCccch
Q 046488          314 LIPEVLDIKPGEIRIGLDFSIGTGTFAARMREF---NVTLVSAIINLGAPFNEMIALRGLVPLYITINQRVPFFDNTLDL  390 (480)
Q Consensus       314 ~I~~vL~l~~g~iR~VLDVGCGtG~fAa~Lae~---gV~Vv~vd~d~~~~~~~~iA~rglip~~~~~ae~LPFpd~SFDl  390 (480)
                      ++-+++....+  .+|||.|||+|.|...+.++   ...+.+++++.....   ++  .......++.... .....||+
T Consensus        10 ~m~~l~~~~~~--~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~---~~--~~~~~~~~~~~~~-~~~~~fd~   81 (223)
T d2ih2a1          10 FMVSLAEAPRG--GRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALD---LP--PWAEGILADFLLW-EPGEAFDL   81 (223)
T ss_dssp             HHHHHCCCCTT--CEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCC---CC--TTEEEEESCGGGC-CCSSCEEE
T ss_pred             HHHHhcCCCCc--CEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHh---hc--ccceeeeeehhcc-ccccccce
Confidence            34455555555  38999999999998888754   456778887632111   00  0011223332222 24578999


Q ss_pred             heecccccCcc--C-----------------------hh-cHHHHHHHHHhcccCCcEEEEe
Q 046488          391 IHTTRFLDGWI--D-----------------------FV-LLDFILYDWDRVLRPGGLLWID  426 (480)
Q Consensus       391 V~ss~vL~h~~--d-----------------------~~-~l~~~L~EI~RVLKPGG~fiI~  426 (480)
                      |++.--+....  .                       .. .-..++....+.|||||++++.
T Consensus        82 ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~al~~lk~~G~~~~I  143 (223)
T d2ih2a1          82 ILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFV  143 (223)
T ss_dssp             EEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             ecccCccccccccccccchhhhhhhhhhhhccccCCCcchHHHHHHHHHHHhcccCCceEEE
Confidence            99864332111  0                       00 0134567888999999998765

>d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Hypothetical protein Lmo1582
species: Listeria monocytogenes [TaxId: 1639]

Probab=97.10  E-value=0.0013  Score=62.83  Aligned_cols=96  Identities=16%  Similarity=0.121  Sum_probs=55.3

Q ss_pred             CeEEEECCCCcHHHHHHhhC-------CCEEEEEecCCChhHHHHHHH-----hCC-CCeeeecccCCCCCCCccchhee
Q 046488          327 RIGLDFSIGTGTFAARMREF-------NVTLVSAIINLGAPFNEMIAL-----RGL-VPLYITINQRVPFFDNTLDLIHT  393 (480)
Q Consensus       327 R~VLDVGCGtG~fAa~Lae~-------gV~Vv~vd~d~~~~~~~~iA~-----rgl-ip~~~~~ae~LPFpd~SFDlV~s  393 (480)
                      .+|||.|||+|.|...+.++       ...+.+++++.   ....+|.     .+. .....+.. -...+...||+|++
T Consensus       119 ~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~---~~~~~a~~~~~~~~~~~~~~~~d~-~~~~~~~~fD~vi~  194 (328)
T d2f8la1         119 VSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDD---LLISLALVGADLQRQKMTLLHQDG-LANLLVDPVDVVIS  194 (328)
T ss_dssp             EEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCH---HHHHHHHHHHHHHTCCCEEEESCT-TSCCCCCCEEEEEE
T ss_pred             CEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccH---HHHHHHHHHHHHhhhhhhhhcccc-cccccccccccccc
Confidence            48999999999998877532       23566777652   2222221     222 22222221 12345678999998


Q ss_pred             cccccCccCh---------------hcHHHHHHHHHhcccCCcEEEEe
Q 046488          394 TRFLDGWIDF---------------VLLDFILYDWDRVLRPGGLLWID  426 (480)
Q Consensus       394 s~vL~h~~d~---------------~~l~~~L~EI~RVLKPGG~fiI~  426 (480)
                      .=-+......               ..-..++..+.+.|+|||++++.
T Consensus       195 NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~~I  242 (328)
T d2f8la1         195 DLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFL  242 (328)
T ss_dssp             ECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEE
T ss_pred             CCCCCCCccchhhhhcchhcccCcchHHHHHHHHHHHhcCCCCceEEE
Confidence            6322111100               00123688899999999997664

>d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Streptococcus pneumoniae, Ermam [TaxId: 1313]

Probab=96.97  E-value=7.1e-05  Score=70.61  Aligned_cols=84  Identities=13%  Similarity=0.087  Sum_probs=54.3

Q ss_pred             HhcCCCCCCCCeEEEECCCCcHHHHHHhhCCCEEEEEecCCCh-h-HHHHHHHhCCCCeeeecccCCCCCCCccchheec
Q 046488          317 EVLDIKPGEIRIGLDFSIGTGTFAARMREFNVTLVSAIINLGA-P-FNEMIALRGLVPLYITINQRVPFFDNTLDLIHTT  394 (480)
Q Consensus       317 ~vL~l~~g~iR~VLDVGCGtG~fAa~Lae~gV~Vv~vd~d~~~-~-~~~~iA~rglip~~~~~ae~LPFpd~SFDlV~ss  394 (480)
                      +.+++.++  .+|||||||+|.++..|++.+..+++++.|... + ..........+.+..+++..+++++..++.|+++
T Consensus        23 ~~~~~~~~--d~VLEIGpG~G~LT~~L~~~~~~v~aIE~D~~l~~~l~~~~~~~~n~~ii~~D~l~~~~~~~~~~~vv~N  100 (245)
T d1yuba_          23 KQLNLKET--DTVYEIGTGKGHLTTKLAKISKQVTSIELDSHLFNLSSEKLKLNTRVTLIHQDILQFQFPNKQRYKIVGN  100 (245)
T ss_dssp             HHCCCCSS--EEEEECSCCCSSCSHHHHHHSSEEEESSSSCSSSSSSSCTTTTCSEEEECCSCCTTTTCCCSSEEEEEEE
T ss_pred             HhcCCCCC--CeEEEECCCccHHHHHHHhhcCceeEeeecccchhhhhhhhhhccchhhhhhhhhccccccceeeeEeee
Confidence            34445544  489999999999999999998889888876321 1 1111111122334556778888888888877765


Q ss_pred             ccccCccCh
Q 046488          395 RFLDGWIDF  403 (480)
Q Consensus       395 ~vL~h~~d~  403 (480)
                      .-. |+..+
T Consensus       101 LPY-~Ist~  108 (245)
T d1yuba_         101 IPY-HLSTQ  108 (245)
T ss_dssp             CCS-SSCHH
T ss_pred             eeh-hhhHH
Confidence            442 44443

>d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase EF2452
species: Enterococcus faecalis [TaxId: 1351]

Probab=96.93  E-value=0.00028  Score=63.06  Aligned_cols=105  Identities=13%  Similarity=0.067  Sum_probs=60.9

Q ss_pred             hHHHhcC-CCCCCCCeEEEECCCCcHHHHHHhhCCCE-EEEEecCCChhHHH----HHHHhCC---CCeeeecc----cC
Q 046488          314 LIPEVLD-IKPGEIRIGLDFSIGTGTFAARMREFNVT-LVSAIINLGAPFNE----MIALRGL---VPLYITIN----QR  380 (480)
Q Consensus       314 ~I~~vL~-l~~g~iR~VLDVGCGtG~fAa~Lae~gV~-Vv~vd~d~~~~~~~----~iA~rgl---ip~~~~~a----e~  380 (480)
                      .+..+|. ...+  .+|||+.||||.++..++++|+. |+.++.+.  .+..    .+..-+.   +.++.+++    +.
T Consensus        31 alFn~l~~~~~~--~~vLDlfaGsG~~g~ea~srGa~~v~~ve~~~--~a~~~~~~N~~~~~~~~~~~i~~~D~~~~l~~  106 (182)
T d2fhpa1          31 SIFNMIGPYFDG--GMALDLYSGSGGLAIEAVSRGMDKSICIEKNF--AALKVIKENIAITKEPEKFEVRKMDANRALEQ  106 (182)
T ss_dssp             HHHHHHCSCCSS--CEEEETTCTTCHHHHHHHHTTCSEEEEEESCH--HHHHHHHHHHHHHTCGGGEEEEESCHHHHHHH
T ss_pred             HHHHHHHHhcCC--CEEEEcccccccccceeeecchhHHHHHHHHH--HHHHHHHHHhhhhhcccccccccccchhhhhh
Confidence            3445554 2233  48999999999999999999874 67776552  2222    1222222   22333332    22


Q ss_pred             CCCCCCccchheecccccCccChhcHHHHHHHHH--hcccCCcEEEEe
Q 046488          381 VPFFDNTLDLIHTTRFLDGWIDFVLLDFILYDWD--RVLRPGGLLWID  426 (480)
Q Consensus       381 LPFpd~SFDlV~ss~vL~h~~d~~~l~~~L~EI~--RVLKPGG~fiI~  426 (480)
                      +.-....||+|++.=   ++.. ......+..+.  ..|+|+|++++-
T Consensus       107 ~~~~~~~fDlIflDP---PY~~-~~~~~~l~~i~~~~~L~~~giIi~E  150 (182)
T d2fhpa1         107 FYEEKLQFDLVLLDP---PYAK-QEIVSQLEKMLERQLLTNEAVIVCE  150 (182)
T ss_dssp             HHHTTCCEEEEEECC---CGGG-CCHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred             hcccCCCcceEEech---hhhh-hHHHHHHHHHHHCCCCCCCEEEEEE
Confidence            333466899998631   1111 11244666664  479999998874

>d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: (Uracil-5-)-methyltransferase
domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain
species: Escherichia coli [TaxId: 562]

Probab=96.89  E-value=0.0098  Score=57.01  Aligned_cols=152  Identities=13%  Similarity=0.152  Sum_probs=84.3

Q ss_pred             hhhhhHHHhcC-CCCCCCCeEEEECCCCcHHHHHHhhCCCEEEEEecCCChh--HHHHHHHhCCCC--eeeecc----cC
Q 046488          310 TADFLIPEVLD-IKPGEIRIGLDFSIGTGTFAARMREFNVTLVSAIINLGAP--FNEMIALRGLVP--LYITIN----QR  380 (480)
Q Consensus       310 ~ad~~I~~vL~-l~~g~iR~VLDVGCGtG~fAa~Lae~gV~Vv~vd~d~~~~--~~~~iA~rglip--~~~~~a----e~  380 (480)
                      .++.+++.++. +......+|||+-||+|.|+..|++++..|++++.+..+.  +...+...+..+  ++.+..    ..
T Consensus       196 ~~e~l~~~v~~~~~~~~~~~vlDLycG~G~fsl~La~~~~~V~gvE~~~~ai~~A~~na~~n~i~n~~~~~~~~~~~~~~  275 (358)
T d1uwva2         196 VNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTK  275 (358)
T ss_dssp             HHHHHHHHHHHHHTCCTTCEEEEESCTTTTTHHHHHTTSSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSS
T ss_pred             hhhHHHHHHHHhhccCCCceEEEecccccccchhccccccEEEeccCcHHHHHHHHHhHHhcccccceeeecchhhhhhh
Confidence            44445555544 2222334899999999999999999888899988653211  111222233322  233332    23


Q ss_pred             CCCCCCccchheecccccCccChhcHHHHHHHHHhcccCCcEEEEeeccCChhhHHHHHHHHHHcCceeeEEEEeeccCC
Q 046488          381 VPFFDNTLDLIHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDSFFCAKEDMNDYLEVFKMLKYKKHKWVVVPKRDK  460 (480)
Q Consensus       381 LPFpd~SFDlV~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~f~~~~edL~~~~~~l~~lGfkkl~W~~~~k~d~  460 (480)
                      .+.....||+|+..      +++.-+..++.++.+ ++|.=.++|+   |....+.+=...+...||+-........-..
T Consensus       276 ~~~~~~~~d~vilD------PPR~G~~~~~~~l~~-~~~~~ivYVS---Cnp~TlaRDl~~l~~~gy~l~~i~~~D~FP~  345 (358)
T d1uwva2         276 QPWAKNGFDKVLLD------PARAGAAGVMQQIIK-LEPIRIVYVS---CNPATLARDSEALLKAGYTIARLAMLDMFPH  345 (358)
T ss_dssp             SGGGTTCCSEEEEC------CCTTCCHHHHHHHHH-HCCSEEEEEE---SCHHHHHHHHHHHHHTTCEEEEEEEECCSTT
T ss_pred             hhhhhccCceEEeC------CCCccHHHHHHHHHH-cCCCEEEEEe---CCHHHHHHHHHHHHHCCCeEeEEEEEecCCC
Confidence            34456789988742      122222446666665 4777777774   6666664433345556887554444333222


Q ss_pred             -CCcceeEEEEEEe
Q 046488          461 -DDREVFFSAVLEK  473 (480)
Q Consensus       461 -~~~E~~lsav~qK  473 (480)
                       ..-|.  .++++|
T Consensus       346 T~HvE~--v~~l~R  357 (358)
T d1uwva2         346 TGHLES--MVLFSR  357 (358)
T ss_dssp             SSCCEE--EEEEEC
T ss_pred             CccEEE--EEEEEe
Confidence             22353  455654

>d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Bacillus subtilis, Ermc' [TaxId: 1423]

Probab=96.82  E-value=0.00052  Score=64.00  Aligned_cols=66  Identities=11%  Similarity=0.016  Sum_probs=43.4

Q ss_pred             CCeEEEECCCCcHHHHHHhhCCCEEEEEecCCChhHHHHHHHh----CCCCeeeecccCCCCCCCccchhee
Q 046488          326 IRIGLDFSIGTGTFAARMREFNVTLVSAIINLGAPFNEMIALR----GLVPLYITINQRVPFFDNTLDLIHT  393 (480)
Q Consensus       326 iR~VLDVGCGtG~fAa~Lae~gV~Vv~vd~d~~~~~~~~iA~r----glip~~~~~ae~LPFpd~SFDlV~s  393 (480)
                      ..+|||||||+|.++..|++.+..+++++.|.  .+......+    ..+.++.+++-.++++......|++
T Consensus        22 ~d~VlEIGpG~G~LT~~Ll~~~~~v~avE~D~--~l~~~l~~~~~~~~n~~i~~~D~l~~~~~~~~~~~vv~   91 (235)
T d1qama_          22 HDNIFEIGSGKGHFTLELVQRCNFVTAIEIDH--KLCKTTENKLVDHDNFQVLNKDILQFKFPKNQSYKIFG   91 (235)
T ss_dssp             TCEEEEECCTTSHHHHHHHHHSSEEEEECSCH--HHHHHHHHHTTTCCSEEEECCCGGGCCCCSSCCCEEEE
T ss_pred             CCeEEEECCCchHHHHHHHhCcCceEEEeecc--chHHHHHHHhhcccchhhhhhhhhhccccccccceeee
Confidence            34899999999999999999988888888762  232222222    1234455666666666554444443

>d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermus thermophilus [TaxId: 274]

Probab=96.74  E-value=0.0013  Score=58.98  Aligned_cols=125  Identities=17%  Similarity=0.114  Sum_probs=77.9

Q ss_pred             hcCCCCCCCCeEEEECCCCcHHHHHHhhCCCEEEEEecCCChhHHHHHHHhCC---CCeeeeccc----CC-CCCCCccc
Q 046488          318 VLDIKPGEIRIGLDFSIGTGTFAARMREFNVTLVSAIINLGAPFNEMIALRGL---VPLYITINQ----RV-PFFDNTLD  389 (480)
Q Consensus       318 vL~l~~g~iR~VLDVGCGtG~fAa~Lae~gV~Vv~vd~d~~~~~~~~iA~rgl---ip~~~~~ae----~L-PFpd~SFD  389 (480)
                      .|.+.+|.  +++|..+|.|+.+..+.+.+-.++++|.+.   .....+.+..   +.++++...    .+ .+..+.+|
T Consensus        13 ~l~~~~g~--~~vD~T~G~GGhs~~iL~~~~~viaiD~D~---~ai~~a~~~~~~~~~~~~~~f~~~~~~l~~~~~~~vd   87 (182)
T d1wg8a2          13 LLAVRPGG--VYVDATLGGAGHARGILERGGRVIGLDQDP---EAVARAKGLHLPGLTVVQGNFRHLKRHLAALGVERVD   87 (182)
T ss_dssp             HHTCCTTC--EEEETTCTTSHHHHHHHHTTCEEEEEESCH---HHHHHHHHTCCTTEEEEESCGGGHHHHHHHTTCSCEE
T ss_pred             hcCCCCCC--EEEEeCCCCcHHHHHHhcccCcEEEEhhhh---hHHHHHhhccccceeEeehHHHHHHHHHHHcCCCccC
Confidence            34555664  899999999999999999887899988763   3333333322   233333211    11 13346789


Q ss_pred             hheecccccCcc--Ch----hcHHHHHHHHHhcccCCcEEEEeeccCChhhHHHHHHHHHHcCcee
Q 046488          390 LIHTTRFLDGWI--DF----VLLDFILYDWDRVLRPGGLLWIDSFFCAKEDMNDYLEVFKMLKYKK  449 (480)
Q Consensus       390 lV~ss~vL~h~~--d~----~~l~~~L~EI~RVLKPGG~fiI~~f~~~~edL~~~~~~l~~lGfkk  449 (480)
                      .|+....+..+.  ++    ..+...|.....+|+|||.+++..|....+  +.+...++..+++.
T Consensus        88 gIl~DLGvSs~qld~~~re~~~~~~~L~~~~~~lk~gg~~~ii~fhs~Ed--~ivk~~~~e~~~k~  151 (182)
T d1wg8a2          88 GILADLGVSSFHLDDPSDELNALKEFLEQAAEVLAPGGRLVVIAFHSLED--RVVKRFLRESGLKV  151 (182)
T ss_dssp             EEEEECSCCHHHHHCGGTHHHHHHHHHHHHHHHEEEEEEEEEEECSHHHH--HHHHHHHHHHCSEE
T ss_pred             EEEEEccCCHHHhhcchHHHHHHHHHHHHHHhhhCCCCeEEEEecccchh--HHHHHHHhhcccee
Confidence            888755443321  11    122446888899999999999988754322  34555666655543

>d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Bacillus subtilis [TaxId: 1423]

Probab=96.70  E-value=0.01  Score=55.37  Aligned_cols=118  Identities=11%  Similarity=0.039  Sum_probs=74.2

Q ss_pred             CCeEEEECCCCcHHHHHHhh--CCCEEEEEecCC-ChhHHHHHHHh-CCCCe--eeecccCCCC---CCCccchheeccc
Q 046488          326 IRIGLDFSIGTGTFAARMRE--FNVTLVSAIINL-GAPFNEMIALR-GLVPL--YITINQRVPF---FDNTLDLIHTTRF  396 (480)
Q Consensus       326 iR~VLDVGCGtG~fAa~Lae--~gV~Vv~vd~d~-~~~~~~~iA~r-glip~--~~~~ae~LPF---pd~SFDlV~ss~v  396 (480)
                      ..+++|||+|.|.-+..|+=  -+..++-++.+. -..++..+..+ ++-..  +.+-+|.+..   ..+.||+|+|. +
T Consensus        71 ~~~ilDiGSGaGfPGi~laI~~p~~~v~Lves~~KK~~FL~~v~~~L~L~n~~i~~~R~E~~~~~~~~~~~~D~v~sR-A  149 (239)
T d1xdza_          71 VNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIVTAR-A  149 (239)
T ss_dssp             CCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEEEE-C
T ss_pred             CCeEEeecCCCchHHHHHHHhCCCccceeecchHHHHHHHHHHHHHhCCCCcEEEeehhhhccccccccccceEEEEh-h
Confidence            35899999999987777664  245555555321 01234444443 44332  3344555543   24689999974 4


Q ss_pred             ccCccChhcHHHHHHHHHhcccCCcEEEEeeccCChhhHHHHHHHHHHcCceee
Q 046488          397 LDGWIDFVLLDFILYDWDRVLRPGGLLWIDSFFCAKEDMNDYLEVFKMLKYKKH  450 (480)
Q Consensus       397 L~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~f~~~~edL~~~~~~l~~lGfkkl  450 (480)
                      +..   .   ..++.-....++|||.+++.--....++++.....+..+|++..
T Consensus       150 va~---l---~~ll~~~~~~l~~~g~~i~~KG~~~~~El~~a~~~~~~~~~~~~  197 (239)
T d1xdza_         150 VAR---L---SVLSELCLPLVKKNGLFVALKAASAEEELNAGKKAITTLGGELE  197 (239)
T ss_dssp             CSC---H---HHHHHHHGGGEEEEEEEEEEECC-CHHHHHHHHHHHHHTTEEEE
T ss_pred             hhC---H---HHHHHHHhhhcccCCEEEEECCCChHHHHHHHHHHHHHcCCEEE
Confidence            432   2   45788899999999998886434445667777777888887644

>d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap methylase
domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5
species: Dengue virus 2 [TaxId: 11060]

Probab=96.49  E-value=0.0018  Score=61.39  Aligned_cols=118  Identities=11%  Similarity=-0.030  Sum_probs=61.5

Q ss_pred             CCCCCCCeEEEECCCCcHHHHHHhhCC--CEEEEEecC-CCh--hHHHHHHHhCCCCeeee-cccCCCCCCCccchheec
Q 046488          321 IKPGEIRIGLDFSIGTGTFAARMREFN--VTLVSAIIN-LGA--PFNEMIALRGLVPLYIT-INQRVPFFDNTLDLIHTT  394 (480)
Q Consensus       321 l~~g~iR~VLDVGCGtG~fAa~Lae~g--V~Vv~vd~d-~~~--~~~~~iA~rglip~~~~-~ae~LPFpd~SFDlV~ss  394 (480)
                      +.++.  +|+|+|||.|+|+.+++++.  ..+.++++- +.+  |...+....+.+..... ....  .++...|+|+|.
T Consensus        64 ~~~~~--~vvDlG~~pGgws~~~a~~~~v~~V~g~~iG~d~~e~P~~~~~~~~ni~~~~~~~dv~~--l~~~~~D~vlcD  139 (257)
T d2p41a1          64 VTPEG--KVVDLGCGRGGWSYYCGGLKNVREVKGLTKGGPGHEEPIPMSTYGWNLVRLQSGVDVFF--IPPERCDTLLCD  139 (257)
T ss_dssp             SCCCE--EEEEETCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCCCCCCSTTGGGEEEECSCCTTT--SCCCCCSEEEEC
T ss_pred             ccCCC--eEEEecCCCChHHHHHHhhcCCCceeEEEecCccccCCccccccccccccchhhhhHHh--cCCCcCCEEEee
Confidence            55543  79999999999999999762  234444431 111  11000000000000001 1222  347889999997


Q ss_pred             ccccCccC----hhcHHHHHHHHHhcccCCcEEEEeeccCChhhHHHHHHHHH
Q 046488          395 RFLDGWID----FVLLDFILYDWDRVLRPGGLLWIDSFFCAKEDMNDYLEVFK  443 (480)
Q Consensus       395 ~vL~h~~d----~~~l~~~L~EI~RVLKPGG~fiI~~f~~~~edL~~~~~~l~  443 (480)
                      .+-. -.+    ....-.++.=+.+.|+|||-|++--+..-.++..+..+.++
T Consensus       140 m~es-s~~~~vd~~Rtl~vLela~~wLk~gg~FvvKVl~py~~~v~e~le~lq  191 (257)
T d2p41a1         140 IGES-SPNPTVEAGRTLRVLNLVENWLSNNTQFCVKVLNPYMSSVIEKMEALQ  191 (257)
T ss_dssp             CCCC-CSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEESCCCSHHHHHHHHHHH
T ss_pred             CCCC-CCCchhhhhhHHHHHHHHHHHcccCCEEEEEECCCCChHHHHHHHHHH
Confidence            5422 211    11112355566688999999887555444444433333333

>d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.34  E-value=0.023  Score=54.12  Aligned_cols=118  Identities=14%  Similarity=0.126  Sum_probs=69.6

Q ss_pred             CCCCeEEEECCCCcHHHHHHhhC-CC-EEEEEecCCChhHHHHHHHh-----------CCCCeeeecc-cCC-CCCCCcc
Q 046488          324 GEIRIGLDFSIGTGTFAARMREF-NV-TLVSAIINLGAPFNEMIALR-----------GLVPLYITIN-QRV-PFFDNTL  388 (480)
Q Consensus       324 g~iR~VLDVGCGtG~fAa~Lae~-gV-~Vv~vd~d~~~~~~~~iA~r-----------glip~~~~~a-e~L-PFpd~SF  388 (480)
                      .+.++||=||.|.|..+..+.++ ++ .+..+++|   +....++++           ..+..+.+++ +-+ -..++.|
T Consensus        79 ~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEiD---~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~~~l~~~~~~~y  155 (290)
T d1xj5a_          79 PNPKKVLVIGGGDGGVLREVARHASIEQIDMCEID---KMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSY  155 (290)
T ss_dssp             SCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESC---HHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCE
T ss_pred             CCCcceEEecCCchHHHHHHHhcccceeeEEecCC---HHHHHHHHHhchhhhccccCCCcEEEEccHHHHHhhccccCc
Confidence            34578999999999999999887 54 45566665   333333322           1223444442 222 2346799


Q ss_pred             chheecccccCccChh--cHHHHHHHHHhcccCCcEEEEee--ccCChhhHHHHHHHHHHc
Q 046488          389 DLIHTTRFLDGWIDFV--LLDFILYDWDRVLRPGGLLWIDS--FFCAKEDMNDYLEVFKML  445 (480)
Q Consensus       389 DlV~ss~vL~h~~d~~--~l~~~L~EI~RVLKPGG~fiI~~--f~~~~edL~~~~~~l~~l  445 (480)
                      |+|+.... .......  --..+++.+.|.|+|||.+++-.  .+...+.+..+...++..
T Consensus       156 DvIi~D~~-dp~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~s~~~~~~~~~~i~~~l~~v  215 (290)
T d1xj5a_         156 DAVIVDSS-DPIGPAKELFEKPFFQSVARALRPGGVVCTQAESLWLHMDIIEDIVSNCREI  215 (290)
T ss_dssp             EEEEECCC-CTTSGGGGGGSHHHHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHHH
T ss_pred             cEEEEcCC-CCCCcchhhCCHHHHHHHHHhcCCCcEEEEecCCcHHHHHHHHHHHhhhhhh
Confidence            99996322 2221110  01348999999999999988742  222333444445555554

>d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Escherichia coli [TaxId: 562]

Probab=96.34  E-value=0.0036  Score=57.25  Aligned_cols=92  Identities=10%  Similarity=0.013  Sum_probs=60.3

Q ss_pred             eEEEECCCCcHHHHHHhhC--CCEEEEEecCCC-hhHHHHHHHh-CCCC--eeeecccCCCCCCCccchheecccccCcc
Q 046488          328 IGLDFSIGTGTFAARMREF--NVTLVSAIINLG-APFNEMIALR-GLVP--LYITINQRVPFFDNTLDLIHTTRFLDGWI  401 (480)
Q Consensus       328 ~VLDVGCGtG~fAa~Lae~--gV~Vv~vd~d~~-~~~~~~iA~r-glip--~~~~~ae~LPFpd~SFDlV~ss~vL~h~~  401 (480)
                      +++|+|+|.|.-+..++=.  +..++-++...- ..++..+..+ ++.+  ++.+.++.+. .+.+||+|+| +++..+ 
T Consensus        68 ~ilDiGsGaG~PGi~laI~~p~~~~~Lves~~KK~~FL~~~~~~L~L~nv~v~~~R~E~~~-~~~~fD~V~s-RA~~~~-  144 (207)
T d1jsxa_          68 RFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFP-SEPPFDGVIS-RAFASL-  144 (207)
T ss_dssp             EEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSC-CCSCEEEEEC-SCSSSH-
T ss_pred             ceeeeeccCCceeeehhhhcccceEEEEecchHHHHHHHHHHHHcCCcceeeeccchhhhc-cccccceehh-hhhcCH-
Confidence            7999999999877777642  566766664311 1244444444 3323  3344466664 4668999886 444332 


Q ss_pred             ChhcHHHHHHHHHhcccCCcEEEEee
Q 046488          402 DFVLLDFILYDWDRVLRPGGLLWIDS  427 (480)
Q Consensus       402 d~~~l~~~L~EI~RVLKPGG~fiI~~  427 (480)
                           ..++.-..+.++|||.+++.-
T Consensus       145 -----~~ll~~~~~~l~~~g~~~~~K  165 (207)
T d1jsxa_         145 -----NDMVSWCHHLPGEQGRFYALK  165 (207)
T ss_dssp             -----HHHHHHHTTSEEEEEEEEEEE
T ss_pred             -----HHHHHHHHHhcCCCcEEEEEC
Confidence                 457888899999999988853

>d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Bacillus subtilis [TaxId: 1423]

Probab=96.33  E-value=0.011  Score=55.93  Aligned_cols=120  Identities=13%  Similarity=0.066  Sum_probs=69.7

Q ss_pred             CCCeEEEECCCCcHHHHHHhhC-CC-EEEEEecCCChhHHHHHHHh------C-----CCCeeeeccc-CCCCCCCccch
Q 046488          325 EIRIGLDFSIGTGTFAARMREF-NV-TLVSAIINLGAPFNEMIALR------G-----LVPLYITINQ-RVPFFDNTLDL  390 (480)
Q Consensus       325 ~iR~VLDVGCGtG~fAa~Lae~-gV-~Vv~vd~d~~~~~~~~iA~r------g-----lip~~~~~ae-~LPFpd~SFDl  390 (480)
                      +.++||-||.|.|..+..+.++ ++ .+..+++|   +....++++      +     .+.++.+++. -+--.++.||+
T Consensus        75 ~p~~vLiiGgG~G~~~~~~l~~~~~~~i~~VEID---~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~~~~l~~~~~~yDv  151 (274)
T d1iy9a_          75 NPEHVLVVGGGDGGVIREILKHPSVKKATLVDID---GKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDV  151 (274)
T ss_dssp             SCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESC---HHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEE
T ss_pred             CcceEEecCCCCcHHHHHHHhcCCcceEEEecCC---HHHHHHHHHhChhhcccccCCCeEEEechHHHHHhhcCCCCCE
Confidence            3468999999999999999886 43 45555555   333333322      1     1233444421 12234678999


Q ss_pred             heecccccCccChh--cHHHHHHHHHhcccCCcEEEEee--ccCChhhHHHHHHHHHHcCcee
Q 046488          391 IHTTRFLDGWIDFV--LLDFILYDWDRVLRPGGLLWIDS--FFCAKEDMNDYLEVFKMLKYKK  449 (480)
Q Consensus       391 V~ss~vL~h~~d~~--~l~~~L~EI~RVLKPGG~fiI~~--f~~~~edL~~~~~~l~~lGfkk  449 (480)
                      |+.... ..+....  --..++..+.|.|+|||.++.-.  .+...+.+..+...++.. |..
T Consensus       152 Ii~D~~-~p~~~~~~L~t~eFy~~~~~~L~~~Gv~v~q~~s~~~~~~~~~~i~~tl~~~-F~~  212 (274)
T d1iy9a_         152 IMVDST-EPVGPAVNLFTKGFYAGIAKALKEDGIFVAQTDNPWFTPELITNVQRDVKEI-FPI  212 (274)
T ss_dssp             EEESCS-SCCSCCCCCSTTHHHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHTT-CSE
T ss_pred             EEEcCC-CCCCcchhhccHHHHHHHHhhcCCCceEEEecCCccccHHHHHHHHHhhhhh-cCc
Confidence            996432 2211100  00348999999999999988742  222333445555666665 443

>d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermotoga maritima [TaxId: 2336]

Probab=96.33  E-value=0.0092  Score=57.26  Aligned_cols=121  Identities=12%  Similarity=0.049  Sum_probs=68.2

Q ss_pred             CCCeEEEECCCCcHHHHHHhhC-CC-EEEEEecCCChhHHHHHHHh-----------CCCCeeeecc-cCCCCCCCccch
Q 046488          325 EIRIGLDFSIGTGTFAARMREF-NV-TLVSAIINLGAPFNEMIALR-----------GLVPLYITIN-QRVPFFDNTLDL  390 (480)
Q Consensus       325 ~iR~VLDVGCGtG~fAa~Lae~-gV-~Vv~vd~d~~~~~~~~iA~r-----------glip~~~~~a-e~LPFpd~SFDl  390 (480)
                      +.++||-||.|.|..+..+.++ ++ .++.+++|   +....++.+           ..+.++++++ +-+--.++.||+
T Consensus        89 ~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEID---p~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDv  165 (295)
T d1inla_          89 NPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVD---GLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDV  165 (295)
T ss_dssp             SCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESC---HHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEE
T ss_pred             CCceEEEecCCchHHHHHHHhcCCCceEEEecCC---HHHHHHHHHHHHhhcccccCCCcEEEhhhHHHHHhcCCCCCCE
Confidence            3579999999999999999886 33 45556655   222322222           1233444441 122334678999


Q ss_pred             heecccccCcc-Chh--cHHHHHHHHHhcccCCcEEEEee--ccCChhhHHHHHHHHHHcCceee
Q 046488          391 IHTTRFLDGWI-DFV--LLDFILYDWDRVLRPGGLLWIDS--FFCAKEDMNDYLEVFKMLKYKKH  450 (480)
Q Consensus       391 V~ss~vL~h~~-d~~--~l~~~L~EI~RVLKPGG~fiI~~--f~~~~edL~~~~~~l~~lGfkkl  450 (480)
                      |++... ..+. ...  --..++..+.|.|+|||.++...  .+-..+....+...++.. |...
T Consensus       166 Ii~D~~-dp~~~~~~~L~t~efy~~~~~~L~~~Gi~v~q~~sp~~~~~~~~~i~~tl~~v-F~~v  228 (295)
T d1inla_         166 IIIDST-DPTAGQGGHLFTEEFYQACYDALKEDGVFSAETEDPFYDIGWFKLAYRRISKV-FPIT  228 (295)
T ss_dssp             EEEEC-----------CCSHHHHHHHHHHEEEEEEEEEECCCTTTTHHHHHHHHHHHHHH-CSEE
T ss_pred             EEEcCC-CCCcCchhhhccHHHHHHHHhhcCCCcEEEEecCChhhhhHHHHHHHHHHHhh-ccee
Confidence            997432 2211 100  01358999999999999988742  112233334444455554 5433

>d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.25  E-value=0.0054  Score=58.56  Aligned_cols=121  Identities=12%  Similarity=0.049  Sum_probs=69.2

Q ss_pred             CCCeEEEECCCCcHHHHHHhhC-C-CEEEEEecCCChhHHHHHHHh-----------CCCCeeeeccc-CCCCCCCccch
Q 046488          325 EIRIGLDFSIGTGTFAARMREF-N-VTLVSAIINLGAPFNEMIALR-----------GLVPLYITINQ-RVPFFDNTLDL  390 (480)
Q Consensus       325 ~iR~VLDVGCGtG~fAa~Lae~-g-V~Vv~vd~d~~~~~~~~iA~r-----------glip~~~~~ae-~LPFpd~SFDl  390 (480)
                      ..++||-+|.|.|..+..+.++ + ..++.+++|   +....++++           ..+.++++++. -+--.+++||+
T Consensus        78 ~pk~vLiiGgG~G~~~~~~l~~~~~~~v~~vEiD---~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDv  154 (285)
T d2o07a1          78 NPRKVLIIGGGDGGVLREVVKHPSVESVVQCEID---EDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDV  154 (285)
T ss_dssp             SCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESC---HHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEE
T ss_pred             CcCeEEEeCCCchHHHHHHHHcCCcceeeeccCC---HHHHHHHHhhchhhccccCCCCceEEEccHHHHHhcCCCCCCE
Confidence            4578999999999999999986 3 355556655   333333322           12334444421 12224678999


Q ss_pred             heecccccCccChhc--HHHHHHHHHhcccCCcEEEEeec--cCChhhHHHHHHHHHHcCceee
Q 046488          391 IHTTRFLDGWIDFVL--LDFILYDWDRVLRPGGLLWIDSF--FCAKEDMNDYLEVFKMLKYKKH  450 (480)
Q Consensus       391 V~ss~vL~h~~d~~~--l~~~L~EI~RVLKPGG~fiI~~f--~~~~edL~~~~~~l~~lGfkkl  450 (480)
                      |++.. .........  -..++..+.|.|+|||.+++...  ....+.+..+...++.. |..+
T Consensus       155 Ii~D~-~~p~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~s~~~~~~~~~~~~~tl~~~-F~~v  216 (285)
T d2o07a1         155 IITDS-SDPMGPAESLFKESYYQLMKTALKEDGVLCCQGECQWLHLDLIKEMRQFCQSL-FPVV  216 (285)
T ss_dssp             EEEEC-C-----------CHHHHHHHHHEEEEEEEEEEEECTTTCHHHHHHHHHHHHHH-CSEE
T ss_pred             EEEcC-CCCCCcccccccHHHHHHHHHhcCCCCeEEEeccchhhhHHHHHHHHHHHHhc-CCee
Confidence            99743 222211100  02479999999999999887532  22233344445555553 5443

>d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=96.21  E-value=0.0045  Score=60.10  Aligned_cols=121  Identities=12%  Similarity=0.055  Sum_probs=68.0

Q ss_pred             CCCCeEEEECCCCcHHHHHHhhC-CC-EEEEEecCCChhHHHHHHHhC-----------CCCeeeecc-cCCCCCCCccc
Q 046488          324 GEIRIGLDFSIGTGTFAARMREF-NV-TLVSAIINLGAPFNEMIALRG-----------LVPLYITIN-QRVPFFDNTLD  389 (480)
Q Consensus       324 g~iR~VLDVGCGtG~fAa~Lae~-gV-~Vv~vd~d~~~~~~~~iA~rg-----------lip~~~~~a-e~LPFpd~SFD  389 (480)
                      .+.++||-||.|.|..+..+.++ ++ .+..+++|   +....++++-           .+.++++++ +-+--.++.||
T Consensus       105 ~~pk~VLIiGgG~G~~~rellk~~~v~~v~~VEID---~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~~l~~~~~~yD  181 (312)
T d2b2ca1         105 PDPKRVLIIGGGDGGILREVLKHESVEKVTMCEID---EMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFD  181 (312)
T ss_dssp             SSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSC---HHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEE
T ss_pred             CCCCeEEEeCCCchHHHHHHHHcCCcceEEEEccc---HHHHHHHHhhchhhccccCCCCeEEEEchHHHHHHhCCCCCC
Confidence            34578999999999999999986 44 46666655   3444444331           112233331 11223467899


Q ss_pred             hheecccccCccChh--cHHHHHHHHHhcccCCcEEEEee--ccCChhhHHHHHHHHHHcCcee
Q 046488          390 LIHTTRFLDGWIDFV--LLDFILYDWDRVLRPGGLLWIDS--FFCAKEDMNDYLEVFKMLKYKK  449 (480)
Q Consensus       390 lV~ss~vL~h~~d~~--~l~~~L~EI~RVLKPGG~fiI~~--f~~~~edL~~~~~~l~~lGfkk  449 (480)
                      +|+.... .......  --..++..+.|.|+|||.++...  .+...+.+..+...++.. |..
T Consensus       182 vII~D~~-dp~~~~~~L~t~eFy~~~~~~L~~~Gi~v~q~~s~~~~~~~~~~i~~~l~~v-F~~  243 (312)
T d2b2ca1         182 VIITDSS-DPVGPAESLFGQSYYELLRDALKEDGILSSQGESVWLHLPLIAHLVAFNRKI-FPA  243 (312)
T ss_dssp             EEEECCC--------------HHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHHH-CSE
T ss_pred             EEEEcCC-CCCCcchhhhhHHHHHHHHhhcCCCcEEEEecCChHHhHHHHHHHHHHhhhc-cce
Confidence            9997432 2111110  01348999999999999988742  222233344455555553 443

>d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase HI0767
species: Haemophilus influenzae [TaxId: 727]

Probab=95.84  E-value=0.0061  Score=53.88  Aligned_cols=94  Identities=11%  Similarity=0.068  Sum_probs=54.1

Q ss_pred             eEEEECCCCcHHHHHHhhCCCE-EEEEecCCChhHHHH----HHHhCCCC--ee--eec---ccCCCCCCCccchheecc
Q 046488          328 IGLDFSIGTGTFAARMREFNVT-LVSAIINLGAPFNEM----IALRGLVP--LY--ITI---NQRVPFFDNTLDLIHTTR  395 (480)
Q Consensus       328 ~VLDVGCGtG~fAa~Lae~gV~-Vv~vd~d~~~~~~~~----iA~rglip--~~--~~~---ae~LPFpd~SFDlV~ss~  395 (480)
                      +|||+-||||.++...+++|+. ++-++.+  ..+...    +..-+...  ..  ..+   ..........||+|++.=
T Consensus        46 ~vLDlFaGsG~~glEalSRGA~~v~fVE~~--~~a~~~ik~Ni~~l~~~~~~~~~~~~d~~~~l~~~~~~~~fDlIFlDP  123 (183)
T d2ifta1          46 ECLDGFAGSGSLGFEALSRQAKKVTFLELD--KTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFLDP  123 (183)
T ss_dssp             EEEETTCTTCHHHHHHHHTTCSEEEEECSC--HHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEECC
T ss_pred             eEeecccCccceeeeeeeecceeeEEeecc--cchhhhHhhHHhhhcccccccccccccccccccccccCCcccEEEech
Confidence            7999999999999999999874 5555543  233221    22212211  11  121   122344466799998631


Q ss_pred             cccCccChhcHHHHHHHHH--hcccCCcEEEEee
Q 046488          396 FLDGWIDFVLLDFILYDWD--RVLRPGGLLWIDS  427 (480)
Q Consensus       396 vL~h~~d~~~l~~~L~EI~--RVLKPGG~fiI~~  427 (480)
                      =   +.. .....++.-+.  ..|+++|++++-+
T Consensus       124 P---Y~~-~~~~~~l~~l~~~~~L~~~~liiiE~  153 (183)
T d2ifta1         124 P---FHF-NLAEQAISLLCENNWLKPNALIYVET  153 (183)
T ss_dssp             C---SSS-CHHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred             h---Hhh-hhHHHHHHHHHHhCCcCCCcEEEEEe
Confidence            1   111 11234555543  5899999988853

>d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: NOL1R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.35  E-value=0.044  Score=51.87  Aligned_cols=80  Identities=14%  Similarity=0.096  Sum_probs=45.8

Q ss_pred             hhhHHHhcCCCCCCCCeEEEECCCCcHHHHHHhhC---CCEEEEEecCCCh--hHHHHHHHhCCCCe--eeecccCCCCC
Q 046488          312 DFLIPEVLDIKPGEIRIGLDFSIGTGTFAARMREF---NVTLVSAIINLGA--PFNEMIALRGLVPL--YITINQRVPFF  384 (480)
Q Consensus       312 d~~I~~vL~l~~g~iR~VLDVGCGtG~fAa~Lae~---gV~Vv~vd~d~~~--~~~~~iA~rglip~--~~~~ae~LPFp  384 (480)
                      ..+...+|+..+|+  +|||+++|.|+=+.+|++.   +..+++++.+...  .....+..-|.-..  ...+...++-.
T Consensus        83 S~l~~~~L~~~~g~--~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~l~~~l~r~g~~~~~~~~~d~~~~~~~  160 (293)
T d2b9ea1          83 SCLPAMLLDPPPGS--HVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPS  160 (293)
T ss_dssp             GGHHHHHHCCCTTC--EEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCTT
T ss_pred             ccccccccCCCccc--eEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHHHHHHHHhcCccceeeeehhhhhhccc
Confidence            44555677777775  7999999999988877763   4567777764211  11122222232222  22333333322


Q ss_pred             ---CCccchhee
Q 046488          385 ---DNTLDLIHT  393 (480)
Q Consensus       385 ---d~SFDlV~s  393 (480)
                         .+.||.|+.
T Consensus       161 ~~~~~~fD~VL~  172 (293)
T d2b9ea1         161 DPRYHEVHYILL  172 (293)
T ss_dssp             CGGGTTEEEEEE
T ss_pred             ccccceeeEEee
Confidence               257999985

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.27  E-value=0.014  Score=50.09  Aligned_cols=97  Identities=15%  Similarity=0.073  Sum_probs=57.0

Q ss_pred             cCCCCCCCCeEEEECCC-CcHHHHHHhh-CCCEEEEEecCCChhHHHHHHHhCCCCeeeecccC---CCCCCCccchhee
Q 046488          319 LDIKPGEIRIGLDFSIG-TGTFAARMRE-FNVTLVSAIINLGAPFNEMIALRGLVPLYITINQR---VPFFDNTLDLIHT  393 (480)
Q Consensus       319 L~l~~g~iR~VLDVGCG-tG~fAa~Lae-~gV~Vv~vd~d~~~~~~~~iA~rglip~~~~~ae~---LPFpd~SFDlV~s  393 (480)
                      .++++|+  +||-+|+| .|.++..+++ .|+.++.++.+..  .. ..+++-+....+...+.   ..-..+.||+|+.
T Consensus        23 ~~~~~g~--~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~~--k~-~~a~~lGa~~~i~~~~~~~~~~~~~~~~d~vi~   97 (168)
T d1piwa2          23 NGCGPGK--KVGIVGLGGIGSMGTLISKAMGAETYVISRSSR--KR-EDAMKMGADHYIATLEEGDWGEKYFDTFDLIVV   97 (168)
T ss_dssp             TTCSTTC--EEEEECCSHHHHHHHHHHHHHTCEEEEEESSST--TH-HHHHHHTCSEEEEGGGTSCHHHHSCSCEEEEEE
T ss_pred             hCcCCCC--EEEEECCCCcchhHHHHhhhccccccccccchh--HH-HHhhccCCcEEeeccchHHHHHhhhcccceEEE
Confidence            3566775  79999998 6777777775 4999888876532  22 33444233333322111   1112457898774


Q ss_pred             cccccCccChhcHHHHHHHHHhcccCCcEEEEee
Q 046488          394 TRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDS  427 (480)
Q Consensus       394 s~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~  427 (480)
                      .-.-.  .+.     .+....++|||||++++..
T Consensus        98 ~~~~~--~~~-----~~~~~~~~l~~~G~iv~~G  124 (168)
T d1piwa2          98 CASSL--TDI-----DFNIMPKAMKVGGRIVSIS  124 (168)
T ss_dssp             CCSCS--TTC-----CTTTGGGGEEEEEEEEECC
T ss_pred             EecCC--ccc-----hHHHHHHHhhccceEEEec
Confidence            32111  111     2556789999999998864

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=95.03  E-value=0.068  Score=45.26  Aligned_cols=99  Identities=12%  Similarity=0.114  Sum_probs=59.5

Q ss_pred             hcCCCCCCCCeEEEECCC-CcHHHHHHhh-CCCEEEEEecCCChhHHHHHHHhCCCCeeeec--c--------cCCC-CC
Q 046488          318 VLDIKPGEIRIGLDFSIG-TGTFAARMRE-FNVTLVSAIINLGAPFNEMIALRGLVPLYITI--N--------QRVP-FF  384 (480)
Q Consensus       318 vL~l~~g~iR~VLDVGCG-tG~fAa~Lae-~gV~Vv~vd~d~~~~~~~~iA~rglip~~~~~--a--------e~LP-Fp  384 (480)
                      ..++++++  +||-+||| .|.++..+++ .|..++.++.+   +...+.+++-+.......  .        +.+. ..
T Consensus        21 ~~~~~~g~--~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~---~~r~~~a~~~ga~~~~~~~~~~~~~~~~~~~~~~~~   95 (170)
T d1e3ja2          21 RAGVQLGT--TVLVIGAGPIGLVSVLAAKAYGAFVVCTARS---PRRLEVAKNCGADVTLVVDPAKEEESSIIERIRSAI   95 (170)
T ss_dssp             HHTCCTTC--EEEEECCSHHHHHHHHHHHHTTCEEEEEESC---HHHHHHHHHTTCSEEEECCTTTSCHHHHHHHHHHHS
T ss_pred             HhCCCCCC--EEEEEcccccchhhHhhHhhhcccccccchH---HHHHHHHHHcCCcEEEeccccccccchhhhhhhccc
Confidence            34566775  78889998 5667776665 48888888765   344455555333322211  0        0010 11


Q ss_pred             CCccchheecccccCccChhcHHHHHHHHHhcccCCcEEEEeeccC
Q 046488          385 DNTLDLIHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDSFFC  430 (480)
Q Consensus       385 d~SFDlV~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~f~~  430 (480)
                      .+.+|+|+-.-     ..    ...+.+..++|||||++++.....
T Consensus        96 g~g~D~vid~~-----g~----~~~~~~a~~~~~~~G~iv~~G~~~  132 (170)
T d1e3ja2          96 GDLPNVTIDCS-----GN----EKCITIGINITRTGGTLMLVGMGS  132 (170)
T ss_dssp             SSCCSEEEECS-----CC----HHHHHHHHHHSCTTCEEEECSCCS
T ss_pred             ccCCceeeecC-----CC----hHHHHHHHHHHhcCCceEEEecCC
Confidence            24567766321     11    247889999999999999876543

>d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CmcI-like
domain: Cephalosporin hydroxylase CmcI
species: Streptomyces clavuligerus [TaxId: 1901]

Probab=94.95  E-value=0.016  Score=53.70  Aligned_cols=102  Identities=14%  Similarity=0.113  Sum_probs=57.1

Q ss_pred             HhcC-CCCCCCCeEEEECCCCcHHHHHHhh------CCCEEEEEecCCChhHHHHHHHhCCCCeeeecccC---C-CCCC
Q 046488          317 EVLD-IKPGEIRIGLDFSIGTGTFAARMRE------FNVTLVSAIINLGAPFNEMIALRGLVPLYITINQR---V-PFFD  385 (480)
Q Consensus       317 ~vL~-l~~g~iR~VLDVGCGtG~fAa~Lae------~gV~Vv~vd~d~~~~~~~~iA~rglip~~~~~ae~---L-PFpd  385 (480)
                      +++. ++|.   +||+||++.|..+..+++      .+..+++++++...... .......+.++.++...   + -+..
T Consensus        74 eli~~~KPk---~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~-~~~~~~~I~~i~gDs~~~~~~~~l~~  149 (232)
T d2bm8a1          74 DMLWELRPR---TIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQI-PASDMENITLHQGDCSDLTTFEHLRE  149 (232)
T ss_dssp             HHHHHHCCS---EEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCC-CGGGCTTEEEEECCSSCSGGGGGGSS
T ss_pred             HHHHHhCCC---EEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhhh-hhccccceeeeecccccHHHHHHHHh
Confidence            3443 5554   799999999986665543      24578888876421110 00111234445544221   1 1235


Q ss_pred             CccchheecccccCccChhcHHHHHHHHHhcccCCcEEEEee
Q 046488          386 NTLDLIHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDS  427 (480)
Q Consensus       386 ~SFDlV~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~  427 (480)
                      ..+|+|+.-..  |......  .-+ ++...|+|||+++|.+
T Consensus       150 ~~~dlIfID~~--H~~~~v~--~~~-~~~~lLk~GG~iIveD  186 (232)
T d2bm8a1         150 MAHPLIFIDNA--HANTFNI--MKW-AVDHLLEEGDYFIIED  186 (232)
T ss_dssp             SCSSEEEEESS--CSSHHHH--HHH-HHHHTCCTTCEEEECS
T ss_pred             cCCCEEEEcCC--cchHHHH--HHH-HHhcccCcCCEEEEEc
Confidence            56888876443  3333321  112 5678999999999964

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=94.56  E-value=0.05  Score=46.93  Aligned_cols=99  Identities=16%  Similarity=0.135  Sum_probs=59.4

Q ss_pred             HhcCCCCCCCCeEEEECCCC-cHHHHHHhhC-CC-EEEEEecCCChhHHHHHHHhCCCCeeeecc-----------cCCC
Q 046488          317 EVLDIKPGEIRIGLDFSIGT-GTFAARMREF-NV-TLVSAIINLGAPFNEMIALRGLVPLYITIN-----------QRVP  382 (480)
Q Consensus       317 ~vL~l~~g~iR~VLDVGCGt-G~fAa~Lae~-gV-~Vv~vd~d~~~~~~~~iA~rglip~~~~~a-----------e~LP  382 (480)
                      +..++++|+  +||-+|+|. |.++..+++. |+ .|+.++.+   +.....+++-+....+...           .+++
T Consensus        22 ~~~~~~~G~--~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~---~~~~~~a~~lGa~~vi~~~~~~~~~~~~~i~~~~   96 (182)
T d1vj0a2          22 EYPESFAGK--TVVIQGAGPLGLFGVVIARSLGAENVIVIAGS---PNRLKLAEEIGADLTLNRRETSVEERRKAIMDIT   96 (182)
T ss_dssp             TCSSCCBTC--EEEEECCSHHHHHHHHHHHHTTBSEEEEEESC---HHHHHHHHHTTCSEEEETTTSCHHHHHHHHHHHT
T ss_pred             HHhCCCCCC--EEEEECCCccchhheecccccccccccccccc---cccccccccccceEEEeccccchHHHHHHHHHhh
Confidence            344566665  899999984 6777777764 87 67777765   3333445553333332211           1111


Q ss_pred             CCCCccchheecccccCccChhcHHHHHHHHHhcccCCcEEEEeeccC
Q 046488          383 FFDNTLDLIHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDSFFC  430 (480)
Q Consensus       383 Fpd~SFDlV~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~f~~  430 (480)
                       ..+.||+|+-.-     ..+    ..+.+..+.|||||++++.....
T Consensus        97 -~~~g~Dvvid~v-----G~~----~~~~~a~~~l~~~G~iv~~G~~~  134 (182)
T d1vj0a2          97 -HGRGADFILEAT-----GDS----RALLEGSELLRRGGFYSVAGVAV  134 (182)
T ss_dssp             -TTSCEEEEEECS-----SCT----THHHHHHHHEEEEEEEEECCCCS
T ss_pred             -CCCCceEEeecC-----Cch----hHHHHHHHHhcCCCEEEEEeecC
Confidence             234588877322     112    26888999999999998875443

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.74  E-value=0.07  Score=45.64  Aligned_cols=95  Identities=16%  Similarity=0.122  Sum_probs=58.7

Q ss_pred             HhcCCCCCCCCeEEEECC--CCcHHHHHHhhC-CCEEEEEecCCChhHHHHHHHhCCCCeeeec-----ccCC--CCCCC
Q 046488          317 EVLDIKPGEIRIGLDFSI--GTGTFAARMREF-NVTLVSAIINLGAPFNEMIALRGLVPLYITI-----NQRV--PFFDN  386 (480)
Q Consensus       317 ~vL~l~~g~iR~VLDVGC--GtG~fAa~Lae~-gV~Vv~vd~d~~~~~~~~iA~rglip~~~~~-----ae~L--PFpd~  386 (480)
                      +..++++|+  +||-.|+  |.|..+..+++. |..++.++-+   +.....+++-+....+..     .+.+  -...+
T Consensus        22 ~~~~~~~g~--~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~---~~~~~~~~~~Ga~~vi~~~~~~~~~~i~~~t~~~   96 (174)
T d1yb5a2          22 HSACVKAGE--SVLVHGASGGVGLAACQIARAYGLKILGTAGT---EEGQKIVLQNGAHEVFNHREVNYIDKIKKYVGEK   96 (174)
T ss_dssp             TTSCCCTTC--EEEEETCSSHHHHHHHHHHHHTTCEEEEEESS---HHHHHHHHHTTCSEEEETTSTTHHHHHHHHHCTT
T ss_pred             HHhCCCCCC--EEEEEeccccccccccccccccCccccccccc---ccccccccccCcccccccccccHHHHhhhhhccC
Confidence            344566775  8999996  467777777764 8988887743   223334444333333321     1111  12456


Q ss_pred             ccchheecccccCccChhcHHHHHHHHHhcccCCcEEEEe
Q 046488          387 TLDLIHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWID  426 (480)
Q Consensus       387 SFDlV~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~  426 (480)
                      .||+|+..-.          ...+.+..++|||||+++..
T Consensus        97 g~d~v~d~~g----------~~~~~~~~~~l~~~G~iv~~  126 (174)
T d1yb5a2          97 GIDIIIEMLA----------NVNLSKDLSLLSHGGRVIVV  126 (174)
T ss_dssp             CEEEEEESCH----------HHHHHHHHHHEEEEEEEEEC
T ss_pred             CceEEeeccc----------HHHHHHHHhccCCCCEEEEE
Confidence            7888885321          23688889999999998875

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=93.73  E-value=0.084  Score=46.71  Aligned_cols=107  Identities=14%  Similarity=0.066  Sum_probs=60.1

Q ss_pred             hcCCCCCCCCeEEEECCCC-cHHHHHHhh-CCC-EEEEEecCCChhHHHHHHHhCCCCeeeecc--------cCCCCCCC
Q 046488          318 VLDIKPGEIRIGLDFSIGT-GTFAARMRE-FNV-TLVSAIINLGAPFNEMIALRGLVPLYITIN--------QRVPFFDN  386 (480)
Q Consensus       318 vL~l~~g~iR~VLDVGCGt-G~fAa~Lae-~gV-~Vv~vd~d~~~~~~~~iA~rglip~~~~~a--------e~LPFpd~  386 (480)
                      ..++++|+  +||-+|||. |..++.+++ .|. .++.++.+   +...+.|++-+........        .++ ....
T Consensus        20 ~a~v~~G~--tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~---~~rl~~a~~~Ga~~~~~~~~~~~~~~i~~~-t~g~   93 (195)
T d1kola2          20 TAGVGPGS--TVYVAGAGPVGLAAAASARLLGAAVVIVGDLN---PARLAHAKAQGFEIADLSLDTPLHEQIAAL-LGEP   93 (195)
T ss_dssp             HTTCCTTC--EEEEECCSHHHHHHHHHHHHTTCSEEEEEESC---HHHHHHHHHTTCEEEETTSSSCHHHHHHHH-HSSS
T ss_pred             HhCCCCCC--EEEEECcCHHHHHHHHHHHhhcccceeeeccc---chhhHhhhhccccEEEeCCCcCHHHHHHHH-hCCC
Confidence            45677886  899999998 556677665 355 56666654   3334455554433322111        111 1234


Q ss_pred             ccchheecccc------cCccChhcHHHHHHHHHhcccCCcEEEEeeccC
Q 046488          387 TLDLIHTTRFL------DGWIDFVLLDFILYDWDRVLRPGGLLWIDSFFC  430 (480)
Q Consensus       387 SFDlV~ss~vL------~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~f~~  430 (480)
                      -+|+++-.-..      ++......-...+.+..+++||||++.+...+.
T Consensus        94 g~D~vid~vG~~~~~~~~~~~~~~~~~~~l~~~~~~~r~gG~v~~~G~~~  143 (195)
T d1kola2          94 EVDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPGLYV  143 (195)
T ss_dssp             CEEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEECSCCC
T ss_pred             CcEEEEECccccccCCcccceeecCcHHHHHHHHHHHhcCCEEEEeeecC
Confidence            56766632110      000000000348999999999999999886543

>d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: High level kasugamycin resistance protein KsgA
species: Escherichia coli [TaxId: 562]

Probab=93.59  E-value=0.026  Score=52.73  Aligned_cols=38  Identities=11%  Similarity=0.163  Sum_probs=31.0

Q ss_pred             HhcCCCCCCCCeEEEECCCCcHHHHHHhhCCCEEEEEecC
Q 046488          317 EVLDIKPGEIRIGLDFSIGTGTFAARMREFNVTLVSAIIN  356 (480)
Q Consensus       317 ~vL~l~~g~iR~VLDVGCGtG~fAa~Lae~gV~Vv~vd~d  356 (480)
                      +.+.+.++  ..||+||||+|.++..|++++..++++++|
T Consensus        15 ~~~~~~~~--d~vlEIGpG~G~LT~~Ll~~~~~v~aiEiD   52 (252)
T d1qyra_          15 SAINPQKG--QAMVEIGPGLAALTEPVGERLDQLTVIELD   52 (252)
T ss_dssp             HHHCCCTT--CCEEEECCTTTTTHHHHHTTCSCEEEECCC
T ss_pred             HhcCCCCC--CEEEEECCCchHHHHHHHccCCceEEEEec
Confidence            34445444  479999999999999999998888888876

>d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Type I restriction enzyme StySJI M protein
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=93.17  E-value=0.085  Score=51.89  Aligned_cols=110  Identities=15%  Similarity=0.033  Sum_probs=59.4

Q ss_pred             hHHHhcCCCCCCCCeEEEECCCCcHHHHHHhhC----C-----------CEEEEEecCCChhHH--HHHHHhCC----CC
Q 046488          314 LIPEVLDIKPGEIRIGLDFSIGTGTFAARMREF----N-----------VTLVSAIINLGAPFN--EMIALRGL----VP  372 (480)
Q Consensus       314 ~I~~vL~l~~g~iR~VLDVGCGtG~fAa~Lae~----g-----------V~Vv~vd~d~~~~~~--~~iA~rgl----ip  372 (480)
                      ++-+++...++  .+|+|-.||+|+|...+.++    +           ....+.+.+...-..  ......+.    ..
T Consensus       153 ~mv~ll~~~~~--~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~~l~g~~~~~~~  230 (425)
T d2okca1         153 AMVDCINPQMG--ETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRSP  230 (425)
T ss_dssp             HHHHHHCCCTT--CCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSCCS
T ss_pred             hhheeccCccc--ceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhhhhcCCccccce
Confidence            34455554433  47999999999998776542    1           235566654211111  11223332    12


Q ss_pred             eeeecccCCCCCCCccchheecccc--cCccC------------hhcHHHHHHHHHhcccCCcEEEEe
Q 046488          373 LYITINQRVPFFDNTLDLIHTTRFL--DGWID------------FVLLDFILYDWDRVLRPGGLLWID  426 (480)
Q Consensus       373 ~~~~~ae~LPFpd~SFDlV~ss~vL--~h~~d------------~~~l~~~L~EI~RVLKPGG~fiI~  426 (480)
                      ...++.- -..+...||+|++.==+  ..+..            ...--.++..+.+.|+|||++.+.
T Consensus       231 i~~~d~l-~~~~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~iI  297 (425)
T d2okca1         231 IVCEDSL-EKEPSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVV  297 (425)
T ss_dssp             EEECCTT-TSCCSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             eecCchh-hhhcccccceEEecCCCCCCccccchhhhhhcccccccHHHHHHHHHHHhcCCCCeEEEE
Confidence            2333211 12346789999986222  11110            000134888999999999997664

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=92.91  E-value=0.058  Score=46.82  Aligned_cols=99  Identities=13%  Similarity=0.122  Sum_probs=59.5

Q ss_pred             hcCCCCCCCCeEEEECCCC-cHHHHHHhhC-CC-EEEEEecCCChhHHHHHHHhCCCCeeeecc--------cCCCCCCC
Q 046488          318 VLDIKPGEIRIGLDFSIGT-GTFAARMREF-NV-TLVSAIINLGAPFNEMIALRGLVPLYITIN--------QRVPFFDN  386 (480)
Q Consensus       318 vL~l~~g~iR~VLDVGCGt-G~fAa~Lae~-gV-~Vv~vd~d~~~~~~~~iA~rglip~~~~~a--------e~LPFpd~  386 (480)
                      ..++++|+  +||=+|||. |.++..+++. |. .++.++.+   +...+.+++-+....+...        .++. ...
T Consensus        22 ~a~~~~g~--~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~---~~r~~~a~~lGa~~~i~~~~~~~~~~v~~~t-~g~   95 (174)
T d1jqba2          22 LADIEMGS--SVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSR---PICVEAAKFYGATDILNYKNGHIEDQVMKLT-NGK   95 (174)
T ss_dssp             HTTCCTTC--CEEEECCSHHHHHHHHHHHTTTCSCEEEECCC---HHHHHHHHHHTCSEEECGGGSCHHHHHHHHT-TTS
T ss_pred             HhCCCCCC--EEEEEcCCcchhhhhhhhhcccccccccccch---hhhHHHHHhhCccccccccchhHHHHHHHHh-hcc
Confidence            44677776  688899986 7788888775 65 57777654   3333444443332222211        1111 234


Q ss_pred             ccchheecccccCccChhcHHHHHHHHHhcccCCcEEEEeeccCC
Q 046488          387 TLDLIHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDSFFCA  431 (480)
Q Consensus       387 SFDlV~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~f~~~  431 (480)
                      -||+|+-.-.     ..    ..+.+..+.|||||.+++..+...
T Consensus        96 G~D~vid~~g-----~~----~~~~~a~~~~~~~G~iv~~G~~~~  131 (174)
T d1jqba2          96 GVDRVIMAGG-----GS----ETLSQAVKMVKPGGIISNINYHGS  131 (174)
T ss_dssp             CEEEEEECSS-----CT----THHHHHHHHEEEEEEEEECCCCCS
T ss_pred             CcceEEEccC-----CH----HHHHHHHHHHhcCCEEEEEeecCC
Confidence            5887764221     12    267888999999999998765443

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=92.28  E-value=0.36  Score=40.42  Aligned_cols=96  Identities=14%  Similarity=0.126  Sum_probs=54.6

Q ss_pred             cCCCCCCCCeEEEECCCC-cHHHHHHhh-CCCEEEEEecCCChhHHHHHHHhCCCCeeeecc-----cCC-CCCCCccch
Q 046488          319 LDIKPGEIRIGLDFSIGT-GTFAARMRE-FNVTLVSAIINLGAPFNEMIALRGLVPLYITIN-----QRV-PFFDNTLDL  390 (480)
Q Consensus       319 L~l~~g~iR~VLDVGCGt-G~fAa~Lae-~gV~Vv~vd~d~~~~~~~~iA~rglip~~~~~a-----e~L-PFpd~SFDl  390 (480)
                      .++++++  +||=+|+|. |..+..+++ .|..++.++.+   +...+.+++-+....+...     +.+ ....+.+|.
T Consensus        23 ~~~~~g~--~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~---~~~~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~g~~~~   97 (166)
T d1llua2          23 TNARPGQ--WVAISGIGGLGHVAVQYARAMGLHVAAIDID---DAKLELARKLGASLTVNARQEDPVEAIQRDIGGAHGV   97 (166)
T ss_dssp             HTCCTTC--EEEEECCSHHHHHHHHHHHHTTCEEEEEESC---HHHHHHHHHTTCSEEEETTTSCHHHHHHHHHSSEEEE
T ss_pred             hCCCCCC--EEEEeeccccHHHHHHHHHHcCCccceecch---hhHHHhhhccCccccccccchhHHHHHHHhhcCCccc
Confidence            4567775  677799875 455566665 48888888754   3333444443333322211     110 011223333


Q ss_pred             heecccccCccChhcHHHHHHHHHhcccCCcEEEEeecc
Q 046488          391 IHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDSFF  429 (480)
Q Consensus       391 V~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~f~  429 (480)
                      |.+..      .    ...+....+.|||||++++....
T Consensus        98 i~~~~------~----~~~~~~~~~~l~~~G~iv~~G~~  126 (166)
T d1llua2          98 LVTAV------S----NSAFGQAIGMARRGGTIALVGLP  126 (166)
T ss_dssp             EECCS------C----HHHHHHHHTTEEEEEEEEECCCC
T ss_pred             ccccc------c----chHHHHHHHHhcCCcEEEEEEec
Confidence            33321      1    23688899999999999887543

>d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Probable dimethyladenosine transferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.83  E-value=0.074  Score=50.31  Aligned_cols=38  Identities=18%  Similarity=0.395  Sum_probs=30.9

Q ss_pred             HhcCCCCCCCCeEEEECCCCcHHHHHHhhCCCEEEEEecC
Q 046488          317 EVLDIKPGEIRIGLDFSIGTGTFAARMREFNVTLVSAIIN  356 (480)
Q Consensus       317 ~vL~l~~g~iR~VLDVGCGtG~fAa~Lae~gV~Vv~vd~d  356 (480)
                      +.+++.++  ..||+||+|+|.++..|++++..++++..|
T Consensus        15 ~~~~~~~~--d~VlEIGPG~G~LT~~Ll~~~~~v~aiE~D   52 (278)
T d1zq9a1          15 DKAALRPT--DVVLEVGPGTGNMTVKLLEKAKKVVACELD   52 (278)
T ss_dssp             HHTCCCTT--CEEEEECCTTSTTHHHHHHHSSEEEEEESC
T ss_pred             HHhCCCCC--CEEEEECCCchHHHHHHHhcCCcEEEEEEc
Confidence            33445444  489999999999999999998888888876

>d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: M.EcoKI
species: Escherichia coli [TaxId: 562]

Probab=90.52  E-value=0.21  Score=50.50  Aligned_cols=107  Identities=15%  Similarity=0.096  Sum_probs=57.0

Q ss_pred             hHHHhcCCCCCCCCeEEEECCCCcHHHHHHhhC----C----------------CEEEEEecCCChhHHHHHHH-----h
Q 046488          314 LIPEVLDIKPGEIRIGLDFSIGTGTFAARMREF----N----------------VTLVSAIINLGAPFNEMIAL-----R  368 (480)
Q Consensus       314 ~I~~vL~l~~g~iR~VLDVGCGtG~fAa~Lae~----g----------------V~Vv~vd~d~~~~~~~~iA~-----r  368 (480)
                      ++-+++...++  .+|+|-.||+|+|...+.++    .                ....+.+.+   +....++.     .
T Consensus       155 ~mv~ll~~~~~--~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~---~~~~~la~~nl~l~  229 (524)
T d2ar0a1         155 TIIHLLKPQPR--EVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELV---PGTRRLALMNCLLH  229 (524)
T ss_dssp             HHHHHHCCCTT--CCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESC---HHHHHHHHHHHHTT
T ss_pred             hhhhcccCccc--hhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccC---HHHHHHHHHHHHhh
Confidence            44456654444  37999999999998665432    1                134566654   22222222     2


Q ss_pred             CC-CCeeeec----ccCC---CCCCCccchheecccc--cCcc----------ChhcHHHHHHHHHhcccCCcEEEEe
Q 046488          369 GL-VPLYITI----NQRV---PFFDNTLDLIHTTRFL--DGWI----------DFVLLDFILYDWDRVLRPGGLLWID  426 (480)
Q Consensus       369 gl-ip~~~~~----ae~L---PFpd~SFDlV~ss~vL--~h~~----------d~~~l~~~L~EI~RVLKPGG~fiI~  426 (480)
                      +. .......    ...+   .+....||+|+++==+  ..+.          .... -.++.-+.+.|||||++.+.
T Consensus       230 ~~~~~i~~~~~~~~~~~l~~d~~~~~kfD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~-~~Fi~~~l~~Lk~gGr~aiI  306 (524)
T d2ar0a1         230 DIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQ-LCFMQHIIETLHPGGRAAVV  306 (524)
T ss_dssp             TCCCBGGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHH-HHHHHHHHHHEEEEEEEEEE
T ss_pred             cccccccccchhhhhhhhhhcccccccceeEEecCCccccccccchhhhcccccccc-HHHHHHHHHhccccCcEEEE
Confidence            21 1111111    0011   1234679999985211  1110          1111 24788899999999997765

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=89.98  E-value=0.43  Score=40.26  Aligned_cols=97  Identities=14%  Similarity=0.100  Sum_probs=56.1

Q ss_pred             hcCCCCCCCCeEEEECCCC-cHHHHHHhh-CCCEEEEEecCCChhHHHHHHHhCCCCeeeeccc--CCCCCCCccchhee
Q 046488          318 VLDIKPGEIRIGLDFSIGT-GTFAARMRE-FNVTLVSAIINLGAPFNEMIALRGLVPLYITINQ--RVPFFDNTLDLIHT  393 (480)
Q Consensus       318 vL~l~~g~iR~VLDVGCGt-G~fAa~Lae-~gV~Vv~vd~d~~~~~~~~iA~rglip~~~~~ae--~LPFpd~SFDlV~s  393 (480)
                      ..++++|+  +||=+|+|. |.++..+++ .|..++.++.+.  ... ..+++-+........+  ..-...+.||.++-
T Consensus        25 ~~~~~~G~--~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~~--~~~-~~a~~lGad~~i~~~~~~~~~~~~~~~D~vid   99 (168)
T d1uufa2          25 HWQAGPGK--KVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSE--AKR-EAAKALGADEVVNSRNADEMAAHLKSFDFILN   99 (168)
T ss_dssp             HTTCCTTC--EEEEECCSHHHHHHHHHHHHTTCEEEEEESSG--GGH-HHHHHHTCSEEEETTCHHHHHTTTTCEEEEEE
T ss_pred             HhCCCCCC--EEEEeccchHHHHHHHHhhcccccchhhccch--hHH-HHHhccCCcEEEECchhhHHHHhcCCCceeee
Confidence            34577776  788899874 667777776 488888766442  222 3333323332222110  01112356887764


Q ss_pred             cccccCccChhcHHHHHHHHHhcccCCcEEEEeec
Q 046488          394 TRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDSF  428 (480)
Q Consensus       394 s~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~f  428 (480)
                      .-.     ..    ..+....++|+|||++++...
T Consensus       100 ~~g-----~~----~~~~~~~~~l~~~G~iv~~G~  125 (168)
T d1uufa2         100 TVA-----AP----HNLDDFTTLLKRDGTMTLVGA  125 (168)
T ss_dssp             CCS-----SC----CCHHHHHTTEEEEEEEEECCC
T ss_pred             eee-----cc----hhHHHHHHHHhcCCEEEEecc
Confidence            321     11    147788899999999988653

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.88  E-value=0.82  Score=38.44  Aligned_cols=99  Identities=12%  Similarity=0.013  Sum_probs=59.8

Q ss_pred             cCCCCCCCCeEEEECCCCcH-HHHHHhh-CCC-EEEEEecCCChhHHHHHHHhCCCCeeeecccCCC---------CCCC
Q 046488          319 LDIKPGEIRIGLDFSIGTGT-FAARMRE-FNV-TLVSAIINLGAPFNEMIALRGLVPLYITINQRVP---------FFDN  386 (480)
Q Consensus       319 L~l~~g~iR~VLDVGCGtG~-fAa~Lae-~gV-~Vv~vd~d~~~~~~~~iA~rglip~~~~~ae~LP---------Fpd~  386 (480)
                      .++++++  +||=+|||+.. ++..+++ .|. .++.++.+   +...+.+++-+........+.-+         ....
T Consensus        22 ~~~~~gd--~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~---~~rl~~a~~~Ga~~~~~~~~~~~~~~~~~~~~~~g~   96 (171)
T d1pl8a2          22 GGVTLGH--KVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLS---ATRLSKAKEIGADLVLQISKESPQEIARKVEGQLGC   96 (171)
T ss_dssp             HTCCTTC--EEEEECCSHHHHHHHHHHHHTTCSEEEEEESC---HHHHHHHHHTTCSEEEECSSCCHHHHHHHHHHHHTS
T ss_pred             hCCCCCC--EEEEECCCccHHHHHHHHHHcCCceEEeccCC---HHHHHHHHHhCCcccccccccccccccccccccCCC
Confidence            4566775  78999998654 4555554 477 57777654   44445666644444333211110         0124


Q ss_pred             ccchheecccccCccChhcHHHHHHHHHhcccCCcEEEEeeccCC
Q 046488          387 TLDLIHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDSFFCA  431 (480)
Q Consensus       387 SFDlV~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~f~~~  431 (480)
                      .+|+|+-.-.     .    ...+......+||||++++..+...
T Consensus        97 g~Dvvid~~G-----~----~~~~~~a~~~~~~gG~iv~~G~~~~  132 (171)
T d1pl8a2          97 KPEVTIECTG-----A----EASIQAGIYATRSGGTLVLVGLGSE  132 (171)
T ss_dssp             CCSEEEECSC-----C----HHHHHHHHHHSCTTCEEEECSCCCS
T ss_pred             CceEEEeccC-----C----chhHHHHHHHhcCCCEEEEEecCCC
Confidence            5777764221     1    3478899999999999999876544

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=89.82  E-value=0.4  Score=40.32  Aligned_cols=99  Identities=16%  Similarity=0.161  Sum_probs=57.1

Q ss_pred             cCCCCCCCCeEEEECC-C-CcHHHHHHhh-CC-CEEEEEecCCChhHHHHHHHhCCCCeeeeccc-----CC--CCCCCc
Q 046488          319 LDIKPGEIRIGLDFSI-G-TGTFAARMRE-FN-VTLVSAIINLGAPFNEMIALRGLVPLYITINQ-----RV--PFFDNT  387 (480)
Q Consensus       319 L~l~~g~iR~VLDVGC-G-tG~fAa~Lae-~g-V~Vv~vd~d~~~~~~~~iA~rglip~~~~~ae-----~L--PFpd~S  387 (480)
                      .++++++  +||=+|| | .|..+..+++ .| ..++.++.+   +...+++++-+....+....     .+  -.....
T Consensus        23 ~~~~~g~--~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~---~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~~~   97 (170)
T d1jvba2          23 ASLDPTK--TLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVR---EEAVEAAKRAGADYVINASMQDPLAEIRRITESKG   97 (170)
T ss_dssp             TTCCTTC--EEEEETTTSHHHHHHHHHHHHHTCCEEEEEESS---HHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTTSC
T ss_pred             hCCCCCC--EEEEEeccccceeeeeecccccccccccccccc---hhhHHHHHHcCCceeeccCCcCHHHHHHHHhhccc
Confidence            4566665  7999997 3 5556665554 46 467776654   33334444433333322110     00  012456


Q ss_pred             cchheecccccCccChhcHHHHHHHHHhcccCCcEEEEeeccCC
Q 046488          388 LDLIHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDSFFCA  431 (480)
Q Consensus       388 FDlV~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~f~~~  431 (480)
                      ||+|+....     .    ...+....+.|||||.+++..+...
T Consensus        98 ~d~vid~~g-----~----~~~~~~a~~~l~~~G~iv~~G~~~~  132 (170)
T d1jvba2          98 VDAVIDLNN-----S----EKTLSVYPKALAKQGKYVMVGLFGA  132 (170)
T ss_dssp             EEEEEESCC-----C----HHHHTTGGGGEEEEEEEEECCSSCC
T ss_pred             chhhhcccc-----c----chHHHhhhhhcccCCEEEEeccccC
Confidence            888775321     1    3478889999999999998765543

>d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: Methyltransferase mboII
species: Moraxella bovis [TaxId: 476]

Probab=89.63  E-value=0.13  Score=45.49  Aligned_cols=41  Identities=10%  Similarity=-0.139  Sum_probs=28.8

Q ss_pred             HHHHHHHHhcccCCcEEEEeeccCChhhHHHHHHHHHHcCceee
Q 046488          407 DFILYDWDRVLRPGGLLWIDSFFCAKEDMNDYLEVFKMLKYKKH  450 (480)
Q Consensus       407 ~~~L~EI~RVLKPGG~fiI~~f~~~~edL~~~~~~l~~lGfkkl  450 (480)
                      ...+.|+.|||||||.+++..   .......+...+...||...
T Consensus        54 ~~~~~e~~rvLk~~g~~~~~~---~~~~~~~~~~~~~~~g~~~~   94 (256)
T d1g60a_          54 YRWIDKVLDKLDKDGSLYIFN---TPFNCAFICQYLVSKGMIFQ   94 (256)
T ss_dssp             HHHHHHHHHHEEEEEEEEEEE---CHHHHHHHHHHHHHTTCEEE
T ss_pred             HHHHHHhhhccccCccccccc---Cchhhhhhhhhhhcccceee
Confidence            457899999999999987632   22333445667778888743

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=89.50  E-value=0.47  Score=40.08  Aligned_cols=95  Identities=18%  Similarity=0.083  Sum_probs=58.1

Q ss_pred             HhcCCCCCCCCeEEEEC--CCCcHHHHHHhhC-CCEEEEEecCCChhHHHHHHHhCCCCeeeec-ccCC------CCCCC
Q 046488          317 EVLDIKPGEIRIGLDFS--IGTGTFAARMREF-NVTLVSAIINLGAPFNEMIALRGLVPLYITI-NQRV------PFFDN  386 (480)
Q Consensus       317 ~vL~l~~g~iR~VLDVG--CGtG~fAa~Lae~-gV~Vv~vd~d~~~~~~~~iA~rglip~~~~~-ae~L------PFpd~  386 (480)
                      +..++++|+  +||=.|  .|+|.++..+++. |..++.++-+   +.....+++.+....... .+.+      -....
T Consensus        19 ~~~~~~~g~--~VlI~ga~g~vG~~~iqla~~~g~~vi~~~~~---~~~~~~l~~~Ga~~vi~~~~~~~~~~v~~~t~~~   93 (183)
T d1pqwa_          19 EVGRLSPGE--RVLIHSATGGVGMAAVSIAKMIGARIYTTAGS---DAKREMLSRLGVEYVGDSRSVDFADEILELTDGY   93 (183)
T ss_dssp             TTSCCCTTC--EEEETTTTSHHHHHHHHHHHHHTCEEEEEESS---HHHHHHHHTTCCSEEEETTCSTHHHHHHHHTTTC
T ss_pred             HHhCCCCCC--EEEEECCCCCcccccchhhccccccceeeecc---cccccccccccccccccCCccCHHHHHHHHhCCC
Confidence            444566665  788776  3566778877765 8888877633   223344555444433321 1110      02346


Q ss_pred             ccchheecccccCccChhcHHHHHHHHHhcccCCcEEEEe
Q 046488          387 TLDLIHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWID  426 (480)
Q Consensus       387 SFDlV~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~  426 (480)
                      -||+|+..-.     .     ..+.+..++|||+|+++..
T Consensus        94 g~d~v~d~~g-----~-----~~~~~~~~~l~~~G~~v~~  123 (183)
T d1pqwa_          94 GVDVVLNSLA-----G-----EAIQRGVQILAPGGRFIEL  123 (183)
T ss_dssp             CEEEEEECCC-----T-----HHHHHHHHTEEEEEEEEEC
T ss_pred             CEEEEEeccc-----c-----hHHHHHHHHhcCCCEEEEE
Confidence            6998885332     1     2678899999999998875

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=89.41  E-value=1.2  Score=38.14  Aligned_cols=100  Identities=14%  Similarity=-0.008  Sum_probs=59.4

Q ss_pred             hcCCCCCCCCeEEEECCCC-cHHHHHHhhC-CC-EEEEEecCCChhHHHHHHHhCCCCeeeec-ccCCC-------CCCC
Q 046488          318 VLDIKPGEIRIGLDFSIGT-GTFAARMREF-NV-TLVSAIINLGAPFNEMIALRGLVPLYITI-NQRVP-------FFDN  386 (480)
Q Consensus       318 vL~l~~g~iR~VLDVGCGt-G~fAa~Lae~-gV-~Vv~vd~d~~~~~~~~iA~rglip~~~~~-ae~LP-------Fpd~  386 (480)
                      ..++++|+  +||=+|||. |.++..+++. |. .++.++.+   +.....+++-+....... ...-.       ...+
T Consensus        23 ~a~v~~G~--~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~---~~r~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~~~~   97 (174)
T d1e3ia2          23 TAKVTPGS--TCAVFGLGCVGLSAIIGCKIAGASRIIAIDIN---GEKFPKAKALGATDCLNPRELDKPVQDVITELTAG   97 (174)
T ss_dssp             TSCCCTTC--EEEEECCSHHHHHHHHHHHHTTCSEEEEECSC---GGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHHTS
T ss_pred             hhCCCCCC--EEEEECCChHHHHHHHHHHHhCCceeeeeccc---hHHHHHHHHhCCCcccCCccchhhhhhhHhhhhcC
Confidence            33466665  789999997 7777777764 76 45555554   333445555444333321 11100       1234


Q ss_pred             ccchheecccccCccChhcHHHHHHHHHhcccCC-cEEEEeeccCC
Q 046488          387 TLDLIHTTRFLDGWIDFVLLDFILYDWDRVLRPG-GLLWIDSFFCA  431 (480)
Q Consensus       387 SFDlV~ss~vL~h~~d~~~l~~~L~EI~RVLKPG-G~fiI~~f~~~  431 (480)
                      -+|+|+-.-     ..    ..++.+..+.|||| |.+++..+...
T Consensus        98 G~d~vie~~-----G~----~~~~~~a~~~~~~g~G~~v~vG~~~~  134 (174)
T d1e3ia2          98 GVDYSLDCA-----GT----AQTLKAAVDCTVLGWGSCTVVGAKVD  134 (174)
T ss_dssp             CBSEEEESS-----CC----HHHHHHHHHTBCTTTCEEEECCCSSS
T ss_pred             CCcEEEEec-----cc----chHHHHHHHHhhcCCeEEEecCCCCC
Confidence            567666321     12    34899999999997 99998765433

>d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.RsrI N6 adenosine-specific DNA methyltransferase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=88.92  E-value=0.34  Score=43.19  Aligned_cols=69  Identities=20%  Similarity=0.199  Sum_probs=42.0

Q ss_pred             CCCCccchheecc----cccCccCh----hcHHHHHHHHHhcccCCcEEEEee---ccC---ChhhHHHHHHHHHHcCce
Q 046488          383 FFDNTLDLIHTTR----FLDGWIDF----VLLDFILYDWDRVLRPGGLLWIDS---FFC---AKEDMNDYLEVFKMLKYK  448 (480)
Q Consensus       383 Fpd~SFDlV~ss~----vL~h~~d~----~~l~~~L~EI~RVLKPGG~fiI~~---f~~---~~edL~~~~~~l~~lGfk  448 (480)
                      ++|+|+|+|+++=    ....|...    +.+...+.|+.|+|||||.+++..   +..   .......+..+....||.
T Consensus        19 l~d~SIDliitDPPYn~~~~~~~~~~~y~~~~~~~~~e~~rvLk~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (279)
T d1eg2a_          19 LPDDSVQLIICDPPYNIMLADWDDHMDYIGWAKRWLAEAERVLSPTGSIAIFGGLQYQGEAGSGDLISIISHMRQNSKML   98 (279)
T ss_dssp             SCTTCEEEEEECCCSBCCGGGGGTCSSHHHHHHHHHHHHHHHEEEEEEEEEEECSCCCCCTTBCCHHHHHHHHHHHCCCE
T ss_pred             CcCCCccEEEECCCCCCCcccccCHHHHHHHHHHHHHHHHHHhCCCccEEEecCccccccccccchhhHHHHHHhccCce
Confidence            4588999988741    22222211    223567899999999999998853   111   112234455677777877


Q ss_pred             eeE
Q 046488          449 KHK  451 (480)
Q Consensus       449 kl~  451 (480)
                      ...
T Consensus        99 ~~~  101 (279)
T d1eg2a_          99 LAN  101 (279)
T ss_dssp             EEE
T ss_pred             eee
Confidence            543

>d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Salicylic acid carboxyl methyltransferase (SAMT)
domain: Salicylic acid carboxyl methyltransferase (SAMT)
species: Clarkia breweri [TaxId: 36903]

Probab=88.91  E-value=0.4  Score=46.74  Aligned_cols=50  Identities=22%  Similarity=0.121  Sum_probs=33.1

Q ss_pred             ccCCCCCCCccchheecccccCccC-------------------h-----------hcHHHHHHHHHhcccCCcEEEEee
Q 046488          378 NQRVPFFDNTLDLIHTTRFLDGWID-------------------F-----------VLLDFILYDWDRVLRPGGLLWIDS  427 (480)
Q Consensus       378 ae~LPFpd~SFDlV~ss~vL~h~~d-------------------~-----------~~l~~~L~EI~RVLKPGG~fiI~~  427 (480)
                      ...=-||++|.|++||+.++|.+..                   +           .++..+|.-=.+-|+|||++++.-
T Consensus       130 FY~rLfP~~Slh~~~Ss~alHWLS~vP~~l~~n~~~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv~GG~mvl~~  209 (359)
T d1m6ex_         130 FYGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTI  209 (359)
T ss_dssp             SSSCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEEE
T ss_pred             hhhhcCCCCceEEeeehhhhhhhhcCCccccCCCCcEEEcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEEE
Confidence            3334488999999999998853321                   0           122334555556679999999863

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=88.57  E-value=1.6  Score=36.68  Aligned_cols=94  Identities=12%  Similarity=0.006  Sum_probs=53.8

Q ss_pred             CCCCCCCeEEEECCCCcH-HHHHHhh-CCC-EEEEEecCCChhHHHHHHHhCCCCeeeecccCC------CCCCCccchh
Q 046488          321 IKPGEIRIGLDFSIGTGT-FAARMRE-FNV-TLVSAIINLGAPFNEMIALRGLVPLYITINQRV------PFFDNTLDLI  391 (480)
Q Consensus       321 l~~g~iR~VLDVGCGtG~-fAa~Lae-~gV-~Vv~vd~d~~~~~~~~iA~rglip~~~~~ae~L------PFpd~SFDlV  391 (480)
                      +++++  +||=+|+|... ++..+++ .|. .++.++.+   +.....+++.+....+...+..      -...+.+|+|
T Consensus        30 ~~~g~--~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~---~~k~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~g~d~v  104 (172)
T d1h2ba2          30 LYPGA--YVAIVGVGGLGHIAVQLLKVMTPATVIALDVK---EEKLKLAERLGADHVVDARRDPVKQVMELTRGRGVNVA  104 (172)
T ss_dssp             CCTTC--EEEEECCSHHHHHHHHHHHHHCCCEEEEEESS---HHHHHHHHHTTCSEEEETTSCHHHHHHHHTTTCCEEEE
T ss_pred             cCCCC--EEEEeCCChHHHHHHHHHHhhcCcccccccch---hHHHHHHhhcccceeecCcccHHHHHHHhhCCCCceEE
Confidence            56665  78889998654 4556654 354 55655544   3334445454433333211110      0123457777


Q ss_pred             eecccccCccChhcHHHHHHHHHhcccCCcEEEEeec
Q 046488          392 HTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDSF  428 (480)
Q Consensus       392 ~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~f  428 (480)
                      +-...     .    ...+....+.|||||++++..+
T Consensus       105 id~~g-----~----~~~~~~a~~~l~~~G~iv~~G~  132 (172)
T d1h2ba2         105 MDFVG-----S----QATVDYTPYLLGRMGRLIIVGY  132 (172)
T ss_dssp             EESSC-----C----HHHHHHGGGGEEEEEEEEECCC
T ss_pred             EEecC-----c----chHHHHHHHHHhCCCEEEEEeC
Confidence            63221     2    2478999999999999998764

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=88.38  E-value=1.4  Score=36.41  Aligned_cols=95  Identities=16%  Similarity=0.095  Sum_probs=54.3

Q ss_pred             cCCCCCCCCeEEEECCCCcH-HHHHHhh-CCCEEEEEecCCChhHHHHHHHhCCCCeeeecccC-----CC-CCCCccch
Q 046488          319 LDIKPGEIRIGLDFSIGTGT-FAARMRE-FNVTLVSAIINLGAPFNEMIALRGLVPLYITINQR-----VP-FFDNTLDL  390 (480)
Q Consensus       319 L~l~~g~iR~VLDVGCGtG~-fAa~Lae-~gV~Vv~vd~d~~~~~~~~iA~rglip~~~~~ae~-----LP-Fpd~SFDl  390 (480)
                      .++++++  +||=.|+|.-. .+..+++ .|..++.++.+   +...+.+++-+........+.     +. ..++.+|+
T Consensus        23 ~~~~~g~--~vlv~G~G~iG~~a~~~a~~~g~~v~~~~~~---~~r~~~~k~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~   97 (168)
T d1rjwa2          23 TGAKPGE--WVAIYGIGGLGHVAVQYAKAMGLNVVAVDIG---DEKLELAKELGADLVVNPLKEDAAKFMKEKVGGVHAA   97 (168)
T ss_dssp             HTCCTTC--EEEEECCSTTHHHHHHHHHHTTCEEEEECSC---HHHHHHHHHTTCSEEECTTTSCHHHHHHHHHSSEEEE
T ss_pred             hCCCCCC--EEEEeecccchhhhhHHHhcCCCeEeccCCC---HHHhhhhhhcCcceecccccchhhhhcccccCCCceE
Confidence            4567775  78888988644 4455554 47887777643   333444555444433332111     11 11333444


Q ss_pred             heecccccCccChhcHHHHHHHHHhcccCCcEEEEeec
Q 046488          391 IHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDSF  428 (480)
Q Consensus       391 V~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~f  428 (480)
                      |.+..      .    ...+....+.|||||.+++...
T Consensus        98 v~~~~------~----~~~~~~a~~~l~~~G~i~~~g~  125 (168)
T d1rjwa2          98 VVTAV------S----KPAFQSAYNSIRRGGACVLVGL  125 (168)
T ss_dssp             EESSC------C----HHHHHHHHHHEEEEEEEEECCC
T ss_pred             EeecC------C----HHHHHHHHHHhccCCceEeccc
Confidence            43321      1    3478999999999999998653

>d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TRM1-like
domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=87.96  E-value=0.21  Score=48.94  Aligned_cols=91  Identities=19%  Similarity=0.020  Sum_probs=54.7

Q ss_pred             CeEEEECCCCcHHHHHHhh-CCC-EEEEEecCCChhHHHH----HHHhCCCCe-----------------eeecccCCC-
Q 046488          327 RIGLDFSIGTGTFAARMRE-FNV-TLVSAIINLGAPFNEM----IALRGLVPL-----------------YITINQRVP-  382 (480)
Q Consensus       327 R~VLDVGCGtG~fAa~Lae-~gV-~Vv~vd~d~~~~~~~~----iA~rglip~-----------------~~~~ae~LP-  382 (480)
                      .+|||..||||.++.+.+. .|+ .|+..|++.  .+.+.    +...+.-..                 ...++..+. 
T Consensus        47 ~~vLD~~sasG~rsiRya~E~~~~~V~~nDis~--~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~Da~~~~~  124 (375)
T d2dula1          47 KIVLDALSATGIRGIRFALETPAEEVWLNDISE--DAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMA  124 (375)
T ss_dssp             SEEEESSCTTSHHHHHHHHHSSCSEEEEEESCH--HHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHH
T ss_pred             CEEEEcCCCccHHHHHHHHhCCCCEEEEecCCH--HHHHHHHHHHHhcCccccccccccccccccceeEeehhhhhhhhH
Confidence            4799999999999996554 555 556666552  33222    222222110                 111111111 


Q ss_pred             CCCCccchheecccccCccChhcHHHHHHHHHhcccCCcEEEEe
Q 046488          383 FFDNTLDLIHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWID  426 (480)
Q Consensus       383 Fpd~SFDlV~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~  426 (480)
                      -....||+|..    .++..+   ..++....|.+|.||++.++
T Consensus       125 ~~~~~fDvIDi----DPfGs~---~pfldsAi~a~~~~Gll~vT  161 (375)
T d2dula1         125 ERHRYFHFIDL----DPFGSP---MEFLDTALRSAKRRGILGVT  161 (375)
T ss_dssp             HSTTCEEEEEE----CCSSCC---HHHHHHHHHHEEEEEEEEEE
T ss_pred             hhcCcCCcccC----CCCCCc---HHHHHHHHHHhccCCEEEEE
Confidence            12456998884    344444   24899999999999999997

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=86.99  E-value=1.5  Score=37.23  Aligned_cols=97  Identities=13%  Similarity=-0.016  Sum_probs=58.3

Q ss_pred             HHhcCCCCCCCCeEEEECCC--CcHHHHHHhhC-CCEEEEEecCCChhHHHHHHHhCCCCeeeecccC-------CCCCC
Q 046488          316 PEVLDIKPGEIRIGLDFSIG--TGTFAARMREF-NVTLVSAIINLGAPFNEMIALRGLVPLYITINQR-------VPFFD  385 (480)
Q Consensus       316 ~~vL~l~~g~iR~VLDVGCG--tG~fAa~Lae~-gV~Vv~vd~d~~~~~~~~iA~rglip~~~~~ae~-------LPFpd  385 (480)
                      .+..++++|+  +||=.|+|  .|..+..+++. |..+++++-+   +...+.+++.+....+.....       .-...
T Consensus        22 ~~~~~v~~G~--~VlV~ga~ggvG~~aiqlak~~Ga~vi~~~~~---~~~~~~~~~~Ga~~vi~~~~~~~~~~~~~~~~~   96 (182)
T d1v3va2          22 LEVCGVKGGE--TVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGS---DEKIAYLKQIGFDAAFNYKTVNSLEEALKKASP   96 (182)
T ss_dssp             HTTTCCCSSC--EEEESSTTSHHHHHHHHHHHHTTCEEEEEESS---HHHHHHHHHTTCSEEEETTSCSCHHHHHHHHCT
T ss_pred             HHHhCCCCCC--EEEEEeCCCchhHHHHHHHHccCCEEEEeCCC---HHHHHHHHhhhhhhhcccccccHHHHHHHHhhc
Confidence            3455677776  78877764  45677777765 9999888743   223334444444433321110       01133


Q ss_pred             CccchheecccccCccChhcHHHHHHHHHhcccCCcEEEEee
Q 046488          386 NTLDLIHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDS  427 (480)
Q Consensus       386 ~SFDlV~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~  427 (480)
                      +-+|+|+-.     ..     ...+.+..+.|+|||.+++..
T Consensus        97 ~Gvd~v~D~-----vG-----~~~~~~~~~~l~~~G~~v~~G  128 (182)
T d1v3va2          97 DGYDCYFDN-----VG-----GEFLNTVLSQMKDFGKIAICG  128 (182)
T ss_dssp             TCEEEEEES-----SC-----HHHHHHHGGGEEEEEEEEECC
T ss_pred             CCCceeEEe-----cC-----chhhhhhhhhccCCCeEEeec
Confidence            457776631     11     237899999999999988864

>d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative zinc-binding alcohol dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=86.48  E-value=1.3  Score=37.97  Aligned_cols=99  Identities=8%  Similarity=-0.042  Sum_probs=60.9

Q ss_pred             HHHhcCCCCCCCCeEEEEC--CCCcHHHHHHhhC-CCEE-EEEecCCChhHHHHHHHhCCCCeeeec--------ccCCC
Q 046488          315 IPEVLDIKPGEIRIGLDFS--IGTGTFAARMREF-NVTL-VSAIINLGAPFNEMIALRGLVPLYITI--------NQRVP  382 (480)
Q Consensus       315 I~~vL~l~~g~iR~VLDVG--CGtG~fAa~Lae~-gV~V-v~vd~d~~~~~~~~iA~rglip~~~~~--------ae~LP  382 (480)
                      +.++.++++|+..+||=.|  .|.|.++..+++. |..+ ++++-  ..+.....+++.+....+..        .... 
T Consensus        20 l~~~~~~~~G~~etVLI~gaaGgVG~~aiQlak~~Ga~~vi~~~~--~~e~~~~l~~~~gad~vi~~~~~~~~~~~~~~-   96 (187)
T d1vj1a2          20 VQEKGHISAGSNQTMVVSGAAGACGSLAGQIGHLLGCSRVVGICG--TQEKCLFLTSELGFDAAVNYKTGNVAEQLREA-   96 (187)
T ss_dssp             HHHHSCCCTTSCCEEEESSTTSTTGGGHHHHHHHTTCSEEEEEES--SHHHHHHHHHHSCCSEEEETTSSCHHHHHHHH-
T ss_pred             HHHHhCCCCCCCCEEEEECCCchhhHHHHHHHHHcCCcceecccc--hHHHHhhhhhcccceEEeeccchhHHHHHHHH-
Confidence            3456667777555788877  5789999999984 7654 33332  22344445555554444322        1111 


Q ss_pred             CCCCccchheecccccCccChhcHHHHHHHHHhcccCCcEEEEee
Q 046488          383 FFDNTLDLIHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDS  427 (480)
Q Consensus       383 Fpd~SFDlV~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~  427 (480)
                       .++-+|+|+-.-     -     ...+....++|+|||+++...
T Consensus        97 -~~~GvDvv~D~v-----G-----g~~~~~~~~~l~~~G~iv~~G  130 (187)
T d1vj1a2          97 -CPGGVDVYFDNV-----G-----GDISNTVISQMNENSHIILCG  130 (187)
T ss_dssp             -CTTCEEEEEESS-----C-----HHHHHHHHTTEEEEEEEEEC-
T ss_pred             -hccCceEEEecC-----C-----chhHHHHhhhccccccEEEec
Confidence             134588887321     1     236899999999999998753

>d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=84.49  E-value=0.35  Score=42.13  Aligned_cols=88  Identities=13%  Similarity=-0.062  Sum_probs=53.6

Q ss_pred             eEEEEC--CCCcHHHHHHhhC-CCEEEEEecCCChhHHHHHHHhCCCCeeeec-----ccCCCCCCCccchheecccccC
Q 046488          328 IGLDFS--IGTGTFAARMREF-NVTLVSAIINLGAPFNEMIALRGLVPLYITI-----NQRVPFFDNTLDLIHTTRFLDG  399 (480)
Q Consensus       328 ~VLDVG--CGtG~fAa~Lae~-gV~Vv~vd~d~~~~~~~~iA~rglip~~~~~-----ae~LPFpd~SFDlV~ss~vL~h  399 (480)
                      +||=.|  .|.|.++..|++. |.+|+++.-+..  . ...+++.+....+.-     ........+.||+|+-.     
T Consensus        34 ~VLI~gaaGGVG~~aiQlak~~Ga~Viat~~s~~--k-~~~~~~lGa~~vi~~~~~~~~~~~~~~~~gvD~vid~-----  105 (176)
T d1xa0a2          34 PVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAA--E-HDYLRVLGAKEVLAREDVMAERIRPLDKQRWAAAVDP-----  105 (176)
T ss_dssp             CEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTT--C-HHHHHHTTCSEEEECC---------CCSCCEEEEEEC-----
T ss_pred             EEEEEeccchHHHHHHHHHHHcCCceEEecCchH--H-HHHHHhcccceeeecchhHHHHHHHhhccCcCEEEEc-----
Confidence            688887  4667899888864 998888774422  2 233344443333211     11123356678877732     


Q ss_pred             ccChhcHHHHHHHHHhcccCCcEEEEeec
Q 046488          400 WIDFVLLDFILYDWDRVLRPGGLLWIDSF  428 (480)
Q Consensus       400 ~~d~~~l~~~L~EI~RVLKPGG~fiI~~f  428 (480)
                      ...     ..+.+..++|||||+++....
T Consensus       106 vgg-----~~~~~~l~~l~~~Griv~~G~  129 (176)
T d1xa0a2         106 VGG-----RTLATVLSRMRYGGAVAVSGL  129 (176)
T ss_dssp             STT-----TTHHHHHHTEEEEEEEEECSC
T ss_pred             CCc-----hhHHHHHHHhCCCceEEEeec
Confidence            222     258899999999999988643

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=83.93  E-value=2.3  Score=35.16  Aligned_cols=86  Identities=16%  Similarity=-0.001  Sum_probs=54.9

Q ss_pred             eEEEECCC--CcHHHHHHhhCCCEEEEEecCCChhHHHHHHHhCCCCeeeecccCCCCCCCccchheecccccCccChhc
Q 046488          328 IGLDFSIG--TGTFAARMREFNVTLVSAIINLGAPFNEMIALRGLVPLYITINQRVPFFDNTLDLIHTTRFLDGWIDFVL  405 (480)
Q Consensus       328 ~VLDVGCG--tG~fAa~Lae~gV~Vv~vd~d~~~~~~~~iA~rglip~~~~~ae~LPFpd~SFDlV~ss~vL~h~~d~~~  405 (480)
                      +|.=||+|  -+.+|..|.+.|..+++.+.+  ....+++.+.+.+.......+.+    ...|+|+.+     . +...
T Consensus         2 kI~iIG~G~mG~~lA~~l~~~g~~V~~~d~~--~~~~~~a~~~~~~~~~~~~~~~~----~~~DiIila-----v-p~~~   69 (165)
T d2f1ka2           2 KIGVVGLGLIGASLAGDLRRRGHYLIGVSRQ--QSTCEKAVERQLVDEAGQDLSLL----QTAKIIFLC-----T-PIQL   69 (165)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSC--HHHHHHHHHTTSCSEEESCGGGG----TTCSEEEEC-----S-CHHH
T ss_pred             EEEEEeecHHHHHHHHHHHHCCCEEEEEECC--chHHHHHHHhhccceeeeecccc----ccccccccc-----C-cHhh
Confidence            35667888  345788888889999887755  34445555555554333333332    356777732     1 2334


Q ss_pred             HHHHHHHHHhcccCCcEEEE
Q 046488          406 LDFILYDWDRVLRPGGLLWI  425 (480)
Q Consensus       406 l~~~L~EI~RVLKPGG~fiI  425 (480)
                      .+.++.++...|+|+-+++-
T Consensus        70 ~~~vl~~l~~~l~~~~iv~~   89 (165)
T d2f1ka2          70 ILPTLEKLIPHLSPTAIVTD   89 (165)
T ss_dssp             HHHHHHHHGGGSCTTCEEEE
T ss_pred             hhhhhhhhhhhcccccceee
Confidence            57799999999999987643

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=83.33  E-value=1.4  Score=37.24  Aligned_cols=97  Identities=12%  Similarity=-0.003  Sum_probs=53.8

Q ss_pred             hcCCCCCCCCeEEEECCCCcH-HHHHHhh-CCCEEE-EEecCCChhHHHHHHHhCCCCeeeec-----ccC-CCCCCCcc
Q 046488          318 VLDIKPGEIRIGLDFSIGTGT-FAARMRE-FNVTLV-SAIINLGAPFNEMIALRGLVPLYITI-----NQR-VPFFDNTL  388 (480)
Q Consensus       318 vL~l~~g~iR~VLDVGCGtG~-fAa~Lae-~gV~Vv-~vd~d~~~~~~~~iA~rglip~~~~~-----ae~-LPFpd~SF  388 (480)
                      ..++++++  +||=+|||.-. .+..+++ .|..++ .++.+   +...+.+++-+....+..     .+. .-+.++.|
T Consensus        23 ~~~~~~g~--~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~---~~k~~~a~~~Ga~~~i~~~~~~~~~~i~~~t~gg~   97 (174)
T d1f8fa2          23 ALKVTPAS--SFVTWGAGAVGLSALLAAKVCGASIIIAVDIV---ESRLELAKQLGATHVINSKTQDPVAAIKEITDGGV   97 (174)
T ss_dssp             TTCCCTTC--EEEEESCSHHHHHHHHHHHHHTCSEEEEEESC---HHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTSCE
T ss_pred             hhCCCCCC--EEEEeCCCHHHhhhhhcccccccceeeeeccH---HHHHHHHHHcCCeEEEeCCCcCHHHHHHHHcCCCC
Confidence            34566775  78889998543 4555554 366544 44433   333334444223222221     111 01234578


Q ss_pred             chheecccccCccChhcHHHHHHHHHhcccCCcEEEEeec
Q 046488          389 DLIHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWIDSF  428 (480)
Q Consensus       389 DlV~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~~f  428 (480)
                      |+|+-.-     ..    ...+.+..+++||+|.+++...
T Consensus        98 D~vid~~-----G~----~~~~~~~~~~~~~~G~i~~~G~  128 (174)
T d1f8fa2          98 NFALEST-----GS----PEILKQGVDALGILGKIAVVGA  128 (174)
T ss_dssp             EEEEECS-----CC----HHHHHHHHHTEEEEEEEEECCC
T ss_pred             cEEEEcC-----Cc----HHHHHHHHhcccCceEEEEEee
Confidence            8877321     11    3478999999999999988653

>d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhiQ-like
domain: Hypothetical protein YhiQ
species: Shigella flexneri [TaxId: 623]

Probab=83.01  E-value=0.4  Score=44.57  Aligned_cols=88  Identities=10%  Similarity=-0.004  Sum_probs=55.5

Q ss_pred             hhhhHHHhcCCCCCCCCeEEEECCCCcHHHHHHhhCCCEEEEEecCCC-hhHHH---HHHHhC---------CCCeeeec
Q 046488          311 ADFLIPEVLDIKPGEIRIGLDFSIGTGTFAARMREFNVTLVSAIINLG-APFNE---MIALRG---------LVPLYITI  377 (480)
Q Consensus       311 ad~~I~~vL~l~~g~iR~VLDVGCGtG~fAa~Lae~gV~Vv~vd~d~~-~~~~~---~iA~rg---------lip~~~~~  377 (480)
                      ....+.+.+.++.+...+|||.=||.|..+..|+..|..|+.+.-+.. +...+   +.+...         .+.++.++
T Consensus        74 ~~~~l~kA~gl~~~~~~~VlD~TaGlG~Da~vlA~~G~~V~~iEr~p~l~~ll~d~l~r~~~~~~~~~~~~~ri~li~~D  153 (250)
T d2oyra1          74 RGEAVAKAVGIKGDYLPDVVDATAGLGRDAFVLASVGCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHAS  153 (250)
T ss_dssp             GGSHHHHHTTCBTTBCCCEEETTCTTCHHHHHHHHHTCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESC
T ss_pred             chhHHHHHhcCCCCCCCEEEECCCcccHHHHHHHhCCCEEEEEccCHHHHHHHHHHHHHHHhCchhHHHHhhhheeecCc
Confidence            344566777777765558999999999999999999999988875421 01111   111111         12344444


Q ss_pred             -ccCCCCCCCccchheeccccc
Q 046488          378 -NQRVPFFDNTLDLIHTTRFLD  398 (480)
Q Consensus       378 -ae~LPFpd~SFDlV~ss~vL~  398 (480)
                       .+-|.-....||+|+..=.+.
T Consensus       154 s~~~L~~~~~~~DvIYlDPMFp  175 (250)
T d2oyra1         154 SLTALTDITPRPQVVYLDPMFP  175 (250)
T ss_dssp             HHHHSTTCSSCCSEEEECCCCC
T ss_pred             HHHHHhccCCCCCEEEECCCCc
Confidence             334544567899999755543

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=82.52  E-value=1.1  Score=37.61  Aligned_cols=95  Identities=15%  Similarity=0.033  Sum_probs=56.5

Q ss_pred             HhcCCCCCCCCeEEEECCC--CcHHHHHHhhC-CCEEEEEecCCChhHHHHHHHhCCCCeeeec-----ccCC--CCCCC
Q 046488          317 EVLDIKPGEIRIGLDFSIG--TGTFAARMREF-NVTLVSAIINLGAPFNEMIALRGLVPLYITI-----NQRV--PFFDN  386 (480)
Q Consensus       317 ~vL~l~~g~iR~VLDVGCG--tG~fAa~Lae~-gV~Vv~vd~d~~~~~~~~iA~rglip~~~~~-----ae~L--PFpd~  386 (480)
                      +..++++++  +||=.|+|  .|.++..+++. |..++.++.+.  ...+.+.+-| ....+..     .+++  -...+
T Consensus        22 ~~~~l~~g~--~Vlv~ga~g~vG~~~iqlak~~Ga~Vi~~~~s~--~k~~~~~~lG-a~~vi~~~~~d~~~~v~~~t~g~   96 (179)
T d1qora2          22 KTYEIKPDE--QFLFHAAAGGVGLIACQWAKALGAKLIGTVGTA--QKAQSALKAG-AWQVINYREEDLVERLKEITGGK   96 (179)
T ss_dssp             TTSCCCTTC--EEEESSTTBHHHHHHHHHHHHHTCEEEEEESSH--HHHHHHHHHT-CSEEEETTTSCHHHHHHHHTTTC
T ss_pred             HHhCCCCCC--EEEEEccccccchHHHHHHHHhCCeEeecccch--HHHHHHHhcC-CeEEEECCCCCHHHHHHHHhCCC
Confidence            344567775  78888655  56788888775 89998887542  2223333334 3322221     1111  01356


Q ss_pred             ccchheecccccCccChhcHHHHHHHHHhcccCCcEEEEe
Q 046488          387 TLDLIHTTRFLDGWIDFVLLDFILYDWDRVLRPGGLLWID  426 (480)
Q Consensus       387 SFDlV~ss~vL~h~~d~~~l~~~L~EI~RVLKPGG~fiI~  426 (480)
                      .+|+|+..-.      .    ..+....+.|+|+|++++.
T Consensus        97 g~d~v~d~~g------~----~~~~~~~~~l~~~G~~v~~  126 (179)
T d1qora2          97 KVRVVYDSVG------R----DTWERSLDCLQRRGLMVSF  126 (179)
T ss_dssp             CEEEEEECSC------G----GGHHHHHHTEEEEEEEEEC
T ss_pred             CeEEEEeCcc------H----HHHHHHHHHHhcCCeeeec
Confidence            7887764221      1    2578899999999998775

>d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus haemolyticus [TaxId: 726]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNA methylase HhaI
species: Haemophilus haemolyticus [TaxId: 726]

Probab=81.88  E-value=17  Score=32.44  Aligned_cols=125  Identities=14%  Similarity=0.063  Sum_probs=67.7

Q ss_pred             CeEEEECCCCcHHHHHHhhCCCEEEEEecCCChhHHHHHHHhCCCCeeeecccCCCCC-CCccchheeccc---cc--C-
Q 046488          327 RIGLDFSIGTGTFAARMREFNVTLVSAIINLGAPFNEMIALRGLVPLYITINQRVPFF-DNTLDLIHTTRF---LD--G-  399 (480)
Q Consensus       327 R~VLDVGCGtG~fAa~Lae~gV~Vv~vd~d~~~~~~~~iA~rglip~~~~~ae~LPFp-d~SFDlV~ss~v---L~--h-  399 (480)
                      -+|||+=||.|.+...|.+.|+.++.. .+....+......... ....++...+... -..+|+++.+.-   ++  . 
T Consensus        12 lrv~~lFsG~Gg~~~gl~~aG~~~v~a-~e~d~~a~~~~~~N~~-~~~~~Di~~~~~~~~~~~Dll~ggpPCq~fS~ag~   89 (327)
T d2c7pa1          12 LRFIDLFAGLGGFRLALESCGAECVYS-NEWDKYAQEVYEMNFG-EKPEGDITQVNEKTIPDHDILCAGFPCQAFSISGK   89 (327)
T ss_dssp             CEEEEETCTTTHHHHHHHHTTCEEEEE-ECCCHHHHHHHHHHHS-CCCBSCGGGSCGGGSCCCSEEEEECCCTTTCTTSC
T ss_pred             CeEEEECccccHHHHHHHHCCCeEEEE-EeCCHHHHHHHHHHCC-CCCcCchhcCchhhcceeeeeecccccchhhhhhh
Confidence            479999999999999999889887643 2333334333322211 1122332222211 135888886421   11  1 


Q ss_pred             ---ccC-hhcHHHHHHHHHhcccCCcEEEEe---eccC--ChhhHHHHHHHHHHcCceeeEEEEe
Q 046488          400 ---WID-FVLLDFILYDWDRVLRPGGLLWID---SFFC--AKEDMNDYLEVFKMLKYKKHKWVVV  455 (480)
Q Consensus       400 ---~~d-~~~l~~~L~EI~RVLKPGG~fiI~---~f~~--~~edL~~~~~~l~~lGfkkl~W~~~  455 (480)
                         ..+ ...+-..+.++.+.+||. +|++-   ++..  ....++.+...++.+||.. .|.+.
T Consensus        90 ~~g~~d~r~~l~~~~~~~i~~~kP~-~~~lENV~~~~~~~~~~~~~~i~~~l~~lGY~~-~~~vl  152 (327)
T d2c7pa1          90 QKGFEDSRGTLFFDIARIVREKKPK-VVFMENVKNFASHDNGNTLEVVKNTMNELDYSF-HAKVL  152 (327)
T ss_dssp             CCGGGSTTSCHHHHHHHHHHHHCCS-EEEEEEEGGGGTGGGGHHHHHHHHHHHHTTBCC-EEEEE
T ss_pred             hcCCcccchhHHHHHHHHHhccCCc-EEecccchhhhhhccchhhHHhhhHHHhcCCcc-eeeEe
Confidence               112 222333445555668886 44443   2332  2234567788999999964 44443