Citrus Sinensis ID: 046499

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120----
Protein Sequence
MKQLLEKHGKTHFNGCLPAYDGRKGFYTAGALPFTSKDFNIKLIDRDESGDINCTVVGRSFFAPGFHKSEIGFGVECWKGFYQSLRPTQMGMSLNMGVKVEVAHGESKRYRVSGITSQPTKKLK
Secondary Structure (PSIPRED)
cHHHHHHHccccccccccccccccccccccccccccEEEEEEEEcccccccEEEEEEcccccccccccccccccEEEEEEEccccccccccEEEEcccEEEEEEccccEEEEEccccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHcccccccccccccccccccccccccEEEEEEEccccccccEEEEccccccccccccccccccEEEEccccccccccHcccEEEEcEEEEEEccccEEEEEcccccccHHHcc
Coil and Loop (DISEMBL)
MKQLLekhgkthfngclpaydgrkgfytagalpftskdfniklidrdesgdinctvvgrsffapgfhkseigfgvECWKGFYqslrptqmgmslnmGVKVEVAhgeskryrvsgitsqptkklk
Flexible Loop (DISEMBL)
MKQLLEKHGKTHFNGCLPAYDGRKGFYTAGALPFTSKDFNIKLIDRDESGDINCTVVGRSFFAPGFHKSEIGFGVECWKGFYQSLRPTQMGMSLNMGVKVEvahgeskryrvsgitsqptkklk
Low Complexity Region (SEG)
MKQLLEKHGKTHFNGCLPAYDGRKGFYTAGALPFTSKDFNIKLIDRDESGDINCTVVGRSFFAPGFHKSEIGFGVECWKGFYQSLRPTQMGMSLNMGVKVEVAHGESKRYRVSGITSQPTKKLK
Disordered region (IsUnstruct)
**********THFNGCLPAYDGRKGFYTAGALPFTSKDFNIKLIDRDESGDINCTVVGRSFFAPGFHKSEIGFGVECWKGFYQSLRPTQMGMSLNMGVKVEV**********************
Disordered Region (DISOPRED)
*KQL***HGKTHFNGCLPAYDGRKGFYTAGALPFTSKDFNIKLIDRDESGDINCTVVGRSFFAPGFHKSEIGFGVECWKGFYQSLRPTQMGMSLNMGVKVEVAHGESKRYRVSGITSQP*****
Disordered Region (DISEMBL)
MKQLLEKHGKTHFNGCLPAYDGRKGFYTAGALPFTSKDFNIKLIDRDESGDINCTVVGRSFFAPGFHKSEIGFGVECWKGFYQSLRPTQMGMSLNMGVKVEVAHGESKR***************
Disordered Region (DISPRO)
MKQLLEKHGKTHFNGCLPAYDGRKGFYTAGALPFTSKDFNIKLIDRDESGDINCTVVGRSFFAPGFHKSEIGFGVECWKGFYQSLRPTQMGMSLNMGVKVEVAHGESKRYRVSGITSQ******
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKQLLEKHGKTHFNGCLPAYDGRKGFYTAGALPFTSKDFNIKLIDRDESGDINCTVVGRSFFAPGFHKSEIGFGVECWKGFYQSLRPTQMGMSLNMGVKVEVAHGESKRYRVSGITSQPTKKLK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	124	2.2.26 [Sep-21-2011]
Q851R2	1058	Protein argonaute MEL1 OS	yes	no	0.991	0.116	0.324	1e-22
Q852N2	1192	Protein argonaute 13 OS=O	no	no	0.991	0.103	0.335	5e-22
Q6Z4F1	1052	Protein argonaute 14 OS=O	no	no	0.991	0.116	0.308	7e-20
Q6K972	1011	Protein argonaute 1C OS=O	no	no	0.991	0.121	0.304	8e-19
O04379	1048	Protein argonaute 1 OS=Ar	yes	no	0.991	0.117	0.295	2e-18
Q69VD5	979	Protein argonaute PNH1 OS	no	no	0.991	0.125	0.281	6e-18
Q5Z5B2	1038	Protein argonaute 1D OS=O	no	no	0.991	0.118	0.313	7e-18
Q6EU14	1082	Protein argonaute 1A OS=O	no	no	0.975	0.111	0.283	6e-16
Q9XGW1	988	Protein argonaute 10 OS=A	no	no	0.991	0.124	0.298	8e-16
Q7Y001	1049	Protein argonaute 12 OS=O	no	no	0.782	0.092	0.346	2e-15

>sp|Q851R2|MEL1_ORYSJ Protein argonaute MEL1 OS=Oryza sativa subsp. japonica GN=MEL1 PE=2 SV=1

 Score =  105 bits (261), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 71/219 (32%), Positives = 94/219 (42%), Gaps = 96/219 (43%)

Query: 1   MKQLLEKHGKTHFNGCLPAYDGRKGFYTAGALPFTSKDFNIKLID--------------- 45
           + +L++ HGKT   G LPAYDGRK  YTAG+LPF S++F +KLID               
Sbjct: 249 LNELIKLHGKTSLGGKLPAYDGRKSLYTAGSLPFESEEFVVKLIDPEKKDKERAEREYKI 308

Query: 46  ---------------------RD--------------ESGDINCTVVGRSFFAPGF-HKS 69
                                RD              ES   N   V RSFF+  F H+ 
Sbjct: 309 TIRIAGRTDLYHLQQFLLGRQRDMPQETIQVLDVVLRESPSWNYVTVSRSFFSTQFGHRG 368

Query: 70  EIGFGVECWKGFYQSLRPTQMGMSLNM--------------------------------- 96
           +IG G+ECW+G+YQSLRPTQMG+SLN+                                 
Sbjct: 369 DIGEGLECWRGYYQSLRPTQMGLSLNIDISATSFFKPVTVIQFVEEFLNIRDTSRPLSDR 428

Query: 97  ----------GVKVEVAHGES--KRYRVSGITSQPTKKL 123
                     GV++E  H E   +RY+++GIT  P  +L
Sbjct: 429 DRVKIKKALRGVRIETNHQEDQIRRYKITGITPIPMSQL 467

Essential for the progression of premeiotic mitosis and meiosis during sporogenesis. Regulates the cell division of premeiotic germ cells, the proper modification of meiotic chromosomes, and the faithful progression of meiosis, probably via small RNA-mediated gene silencing. May be involved in histone H3 'Lys-9' demethylation in the pericentromeric region.
Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q852N2|AGO13_ORYSJ Protein argonaute 13 OS=Oryza sativa subsp. japonica GN=AGO13 PE=2 SV=1

 Score =  102 bits (255), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 65/194 (33%), Positives = 91/194 (46%), Gaps = 71/194 (36%)

Query: 1   MKQLLEKHGKTHFNGCLPAYDGRKGFYTAGALPFTSKDFNIKLIDRDESG--------DI 52
           + +L++ HGKT   G LPAYDGRK  YTAG+LPF S++F +KLID ++           I
Sbjct: 50  LNELIKLHGKTSLGGKLPAYDGRKSLYTAGSLPFESEEFVVKLIDPEKKDKERAEREYKI 109

Query: 53  NCTVVGRSFF-------------APGF-----HKSEIGFGVECWKGFYQSLRPTQMGMSL 94
              + GR+ F              P       H+ +IG G+ECW+G+YQSLRPTQMG+SL
Sbjct: 110 TIRIAGRTDFYHLQQFLLGRQRDMPQETIQFGHRGDIGEGLECWRGYYQSLRPTQMGLSL 169

Query: 95  NM-------------------------------------------GVKVEVAHGES--KR 109
           N+                                           GV++E  H E   +R
Sbjct: 170 NIDISATSFFKPVTVIQFVEEFLNIRDTSRPLSDRDRVKIKKALRGVRIETNHQEDQIRR 229

Query: 110 YRVSGITSQPTKKL 123
           Y+++GIT  P  +L
Sbjct: 230 YKITGITPIPMSQL 243

Probably involved in the RNA silencing pathway. May bind to short RNAs such as microRNAs (miRNAs) or short interfering RNAs (siRNAs), and represses the translation of mRNAs which are complementary to them.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q6Z4F1|AGO14_ORYSJ Protein argonaute 14 OS=Oryza sativa subsp. japonica GN=AGO14 PE=2 SV=1

 Score = 95.9 bits (237), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 67/217 (30%), Positives = 88/217 (40%), Gaps = 94/217 (43%)

Query: 1   MKQLLEKHGKTHFNGCLPAYDGRKGFYTAGALPFTSKDFNIKL----------------- 43
           M +L   H ++H  G   AYDG K  YTAG LPF S DF IKL                 
Sbjct: 243 MSELARLHRESHLGGISFAYDGSKALYTAGKLPFDSMDFKIKLGKELREIEYKVTIRRAG 302

Query: 44  -------------IDRD--------------ESGDINCTVVGRSFFAPGFHKSEIGFGVE 76
                          RD              ES  +N  +V RSF++  F + +IG G+E
Sbjct: 303 QADLHHLHEFIAGRQRDSQQQTIQALDVVLRESPSLNYVIVSRSFYSTMFGRQDIGDGLE 362

Query: 77  CWKGFYQSLRPTQMGMSLNM---------------------------------------- 96
           CWKG+YQSLRPTQMG+SLN+                                        
Sbjct: 363 CWKGYYQSLRPTQMGLSLNIDISSTPFFKPISVVEYVKNCLGTPTNANGPDPRRPLSDID 422

Query: 97  ---------GVKVEVAH-GESKRYRVSGITSQPTKKL 123
                    GV+VE  H G+S +Y+++ ITS+P  +L
Sbjct: 423 RLKVKKALRGVRVETTHQGKSSKYKITTITSEPLSQL 459

Probably involved in the RNA silencing pathway. May bind to short RNAs such as microRNAs (miRNAs) or short interfering RNAs (siRNAs), and represses the translation of mRNAs which are complementary to them.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q6K972|AGO1C_ORYSJ Protein argonaute 1C OS=Oryza sativa subsp. japonica GN=AGO1C PE=2 SV=1

 Score = 92.4 bits (228), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 67/220 (30%), Positives = 93/220 (42%), Gaps = 97/220 (44%)

Query: 1   MKQLLEKHGKTHFNGCLPAYDGRKGFYTAGALPFTSKDFNIKLIDRDE-SGD-------- 51
           +K+L+  +  ++  G LPAYDGRK  YTAG LPFTS++F I L+D D+ SG         
Sbjct: 193 IKELVNLYKASYLGGRLPAYDGRKSLYTAGPLPFTSQEFQITLLDDDDGSGSERRQRTFR 252

Query: 52  -------------INCTVVGR-----------------------------SFFAPGF-HK 68
                        +   + GR                             SFF+P    +
Sbjct: 253 VVIKFAARADLHRLELFLAGRHAEAPQEALQVLDIVLRELPSARYAPFGRSFFSPYLGRR 312

Query: 69  SEIGFGVECWKGFYQSLRPTQMGMSLNM-------------------------------- 96
             +G G+E W+GFYQS+RPTQMG+SLN+                                
Sbjct: 313 QPLGEGLESWRGFYQSIRPTQMGLSLNIDMSATAFIEPLPVIDFVAQLLNSDIHSRPLSD 372

Query: 97  -----------GVKVEVAH--GESKRYRVSGITSQPTKKL 123
                      GVKVEV H     ++YR+SG+T QPT++L
Sbjct: 373 AERVKIKKALRGVKVEVTHRGNMRRKYRISGLTIQPTREL 412

Probably involved in the RNA silencing pathway. May bind to short RNAs such as microRNAs (miRNAs) or short interfering RNAs (siRNAs), and represses the translation of mRNAs which are complementary to them.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|O04379|AGO1_ARATH Protein argonaute 1 OS=Arabidopsis thaliana GN=AGO1 PE=1 SV=1

 Score = 90.9 bits (224), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 65/220 (29%), Positives = 89/220 (40%), Gaps = 97/220 (44%)

Query: 1   MKQLLEKHGKTHFNGCLPAYDGRKGFYTAGALPFTSKDFNIKLID---------RDESGD 51
           MKQL++ +  +H    LPAYDGRK  YTAG LPF SK+F I L+D         R+    
Sbjct: 229 MKQLVDNYRDSHLGSRLPAYDGRKSLYTAGPLPFNSKEFRINLLDEEVGAGGQRREREFK 288

Query: 52  INCTVVGR------------------------------------------SFFAPGF-HK 68
           +   +V R                                          SF++P    K
Sbjct: 289 VVIKLVARADLHHLGMFLEGKQSDAPQEALQVLDIVLRELPTSRYIPVGRSFYSPDIGKK 348

Query: 69  SEIGFGVECWKGFYQSLRPTQMGMSLNM-------------------------------- 96
             +G G+E W+GFYQS+RPTQMG+SLN+                                
Sbjct: 349 QSLGDGLESWRGFYQSIRPTQMGLSLNIDMSSTAFIEANPVIQFVCDLLNRDISSRPLSD 408

Query: 97  -----------GVKVEVAH--GESKRYRVSGITSQPTKKL 123
                      GVKVEV H     ++YR+SG+T+  T++L
Sbjct: 409 ADRVKIKKALRGVKVEVTHRGNMRRKYRISGLTAVATREL 448

Involved in RNA-mediated post-transcriptional gene silencing (PTGS). Main component of the RNA-induced silencing complex (RISC) that binds to a short guide RNA such as microRNA (miRNA) or small interfering RNA (siRNA). RISC uses the mature miRNA or siRNA as a guide for slicer-directed cleavage of homologous mRNAs to repress gene expression. Requires DRB1 for directional loading of the small RNA duplex (guide stand and passenger strand) onto RISC for passenger strand degradation. Unlike animal RISC that associates in high molecular weight complex, Arabidopsis RISC is probably composed only of the AGO1 protein and associated RNA without any other proteins. Associates mainly with miRNAs of 21 nucleotide in length and preferentially recruits small RNAs with a 5' terminal uridine. Associates with 22 nucleotide miRNAs to trigger RDR6-dependent secondary siRNAs biogenesis. This pathway amplifies silencing by using the target RNA as substrate to generate secondary siRNAs. Binds to miR168 which targets its own mRNA for repression, establishing a homeostatic regulatory loop. Involved in antiviral RNA silencing by contributing to viral RNA clearance. Is capable of targeting viral RNAs with more compact structures than AGO7 which favors less structured RNA targets. May not associate with 24 nucleotide siRNAs involved in chromatin silencing. Essential for multiple processes in development. Essential for proper development of leaves and floral organs, and formation of axillary meristems. Like AGO10, required for stem cell function and organ polarity.

Arabidopsis thaliana (taxid: 3702)

>sp|Q69VD5|PNH1_ORYSJ Protein argonaute PNH1 OS=Oryza sativa subsp. japonica GN=PHN1 PE=2 SV=1

 Score = 89.4 bits (220), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 62/220 (28%), Positives = 88/220 (40%), Gaps = 97/220 (44%)

Query: 1   MKQLLEKHGKTHFNGCLPAYDGRKGFYTAGALPFTSKDFNIKLIDRD------------- 47
           M +L+  +  +   G LPAYDGRK  YTAG LPF +++F ++L D D             
Sbjct: 174 MSELVRLYHDSDLGGRLPAYDGRKNLYTAGTLPFDAREFVVRLTDDDDGTGVPPREREYR 233

Query: 48  --------------------------------------ESGDINCTVVGRSFFAPGFHKS 69
                                                 E  +     +GRSF++P   K 
Sbjct: 234 VAIKFAARADLHHLRQFIAGRQADAPQEALQVLDIVLRELANRRYVSIGRSFYSPDIRKP 293

Query: 70  E-IGFGVECWKGFYQSLRPTQMGMSLNM-------------------------------- 96
           + +G G++ W GFYQS+RPTQMG+SLN+                                
Sbjct: 294 QRLGDGLQSWCGFYQSIRPTQMGLSLNIDMSSTAFIEPLPVIEFVAQILGKDVISRPLSD 353

Query: 97  -----------GVKVEVAH--GESKRYRVSGITSQPTKKL 123
                      GVKVEV H     ++YR+SG+T+QPT +L
Sbjct: 354 ANRIKIKKALRGVKVEVTHRGNVRRKYRISGLTTQPTHEL 393

Probably involved in the RNA silencing pathway. May bind to short RNAs such as microRNAs (miRNAs) or short interfering RNAs (siRNAs), and represses the translation of mRNAs which are complementary to them (By similarity). Plays a role in the maintenance of the indeterminate state of the stem cells in the shoot apical meristem (SAM). Regulates leaf formation through vascular development and may be involved in determining the central domain of the leaf founder region.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q5Z5B2|AGO1D_ORYSJ Protein argonaute 1D OS=Oryza sativa subsp. japonica GN=AGO1D PE=2 SV=1

 Score = 89.4 bits (220), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 69/220 (31%), Positives = 92/220 (41%), Gaps = 97/220 (44%)

Query: 1   MKQLLEKHGKTHFNGCLPAYDGRKGFYTAGALPFTSKDFNIKLIDRDE-SGD-------- 51
           M++L+  H  ++  G LPAYDGRK  YTAG LPFTSK+F I L++ D+ SG         
Sbjct: 221 MEELVRLHKMSYLGGRLPAYDGRKSLYTAGPLPFTSKEFRISLLEEDDGSGSERRQKTYN 280

Query: 52  -------------INCTVVGRSFFAPG--------------------FHKS--------- 69
                        +   + GR   AP                     F +S         
Sbjct: 281 VVIKFAARADLHRLEQFLAGRQAEAPQEALQVLDIVLRELPTARYAPFGRSFFSPDLGRR 340

Query: 70  -EIGFGVECWKGFYQSLRPTQMGMSLNM-------------------------------- 96
             +G G+E W+GFYQS+RPTQMG+SLN+                                
Sbjct: 341 RSLGEGLETWRGFYQSIRPTQMGLSLNIDMSATAFFEPLPVIDFVIQLLNTDIRSRPLSD 400

Query: 97  -----------GVKVEVAH-GESKR-YRVSGITSQPTKKL 123
                      GVKV V H G  +R YR+SG+TSQ T++L
Sbjct: 401 AERVKIKKALRGVKVGVTHRGNMRRKYRISGLTSQATREL 440

Probably involved in the RNA silencing pathway. May bind to short RNAs such as microRNAs (miRNAs) or short interfering RNAs (siRNAs), and represses the translation of mRNAs which are complementary to them.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q6EU14|AGO1A_ORYSJ Protein argonaute 1A OS=Oryza sativa subsp. japonica GN=AGO1A PE=2 SV=1

 Score = 82.8 bits (203), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 63/222 (28%), Positives = 90/222 (40%), Gaps = 101/222 (45%)

Query: 3   QLLEKHGKTHFNGCLPAYDGRKGFYTAGALPFTSKDFNIKLIDRDES------------- 49
           +++ ++ ++H  G LP YDGRK  YTAG LPFTS+ F++ L D +ES             
Sbjct: 259 EIVTQYRQSHLGGRLPVYDGRKSLYTAGPLPFTSRTFDVILQDEEESLAVGQGAQRRERP 318

Query: 50  ----------GDINCT---VVGRSFFAP------------------------GFHKSEIG 72
                      D++     + GR   AP                         F+   +G
Sbjct: 319 FKVVIKFAARADLHHLAMFLAGRQADAPQEALQVLDIVLRELPTARYSPVARSFYSPNLG 378

Query: 73  F------GVECWKGFYQSLRPTQMGMSLNM------------------------------ 96
                  G+E W+GFYQS+RPTQMG+SLN+                              
Sbjct: 379 RRQQLGEGLESWRGFYQSIRPTQMGLSLNIDMSSTAFIEPLPVIDFVAQLLNRDISVRPL 438

Query: 97  -------------GVKVEVAH--GESKRYRVSGITSQPTKKL 123
                        GVKVEV H     ++YR+SG+TSQ T++L
Sbjct: 439 SDADRVKIKKALRGVKVEVTHRGNMRRKYRISGLTSQATREL 480

Probably involved in the RNA silencing pathway. May bind to short RNAs such as microRNAs (miRNAs) or short interfering RNAs (siRNAs), and represses the translation of mRNAs which are complementary to them.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9XGW1|AGO10_ARATH Protein argonaute 10 OS=Arabidopsis thaliana GN=AGO10 PE=2 SV=1

 Score = 82.4 bits (202), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 66/221 (29%), Positives = 91/221 (41%), Gaps = 98/221 (44%)

Query: 1   MKQLLEKHGKTHFNGCLPAYDGRKGFYTAGALPFTSKDFN-------------------- 40
           + +L+  + ++     LPAYDGRK  YTAG LPFT K+F+                    
Sbjct: 178 IAELVRLYKESDLGRRLPAYDGRKSLYTAGELPFTWKEFSVKIVDEDDGIINGPKRERSY 237

Query: 41  ---IKLIDR------------------DESGDINCTV-----------VGRSFFAPGFHK 68
              IK + R                   E+  I   V           VGRSFF+P    
Sbjct: 238 KVAIKFVARANMHHLGEFLAGKRADCPQEAVQILDIVLRELSVKRFCPVGRSFFSPDIKT 297

Query: 69  SE-IGFGVECWKGFYQSLRPTQMGMSLNM------------------------------- 96
            + +G G+E W GFYQS+RPTQMG+SLN+                               
Sbjct: 298 PQRLGEGLESWCGFYQSIRPTQMGLSLNIDMASAAFIEPLPVIEFVAQLLGKDVLSKPLS 357

Query: 97  ------------GVKVEVAHGES--KRYRVSGITSQPTKKL 123
                       GVKVEV H  +  ++YRV+G+T+QPT++L
Sbjct: 358 DSDRVKIKKGLRGVKVEVTHRANVRRKYRVAGLTTQPTREL 398

Involved in RNA-mediated post-transcriptional gene silencing (PTGS). Main component of the RNA-induced silencing complex (RISC) that binds to a short guide RNA such as a microRNA (miRNA) or small interfering RNA (siRNA). RISC uses the mature miRNA or siRNA as a guide for slicer-directed cleavage of homologous mRNAs to repress gene expression. Required for reliable formation of primary and axillary shoot apical meristems. Specifies leaf adaxial identity by repressing the miR165 and miR166 microRNAs in the embryonic shoot apex, in the shoot apical meristem (SAM) and leaf. Represses the microRNA miR398 which targets CCS1 chaperone mRNAs for translational inhibition. Acts as a negative regulator of AGO1 protein level. Like AGO1, is required for stem cell function and organ polarity. Unlike AGO1, is not subjected to small RNA-mediated repression itself. Essential for multiple processes in development.

Arabidopsis thaliana (taxid: 3702)

>sp|Q7Y001|AGO12_ORYSJ Protein argonaute 12 OS=Oryza sativa subsp. japonica GN=AGO12 PE=2 SV=2

 Score = 80.9 bits (198), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 53/153 (34%), Positives = 69/153 (45%), Gaps = 56/153 (36%)

Query: 1   MKQLLEKHGKTHFNGCLPAYDGRKGFYTAGALPFTSKDF--------------------- 39
           + +L+  H K   +G LP YDGRK  YTAG LPF +KDF                     
Sbjct: 243 INKLVALH-KQFLDGRLPVYDGRKSIYTAGPLPFKTKDFVVKHINPLRGNQREEEYKVTI 301

Query: 40  -------------------------NIKLID---RDESGDINCTV-----VGRSFFAPGF 66
                                     I+ +D   R+    +N T      + RSFF+  F
Sbjct: 302 KQASKTDLYSLKQFLVGRQRELPQDTIQALDIALRECPTSVNFTCDRYVSISRSFFSQSF 361

Query: 67  -HKSEIGFGVECWKGFYQSLRPTQMGMSLNMGV 98
            H  EIG G ECW+G+YQSLRPTQMG+SLN+ +
Sbjct: 362 GHGGEIGSGTECWRGYYQSLRPTQMGLSLNIDI 394

Probably involved in the RNA silencing pathway. May bind to short RNAs such as microRNAs (miRNAs) or short interfering RNAs (siRNAs), and represses the translation of mRNAs which are complementary to them.

Oryza sativa subsp. japonica (taxid: 39947)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	124
224069720	850	argonaute protein group [Populus trichoc	0.991	0.144	0.343	3e-26
242032667	1067	hypothetical protein SORBIDRAFT_01g00492	0.991	0.115	0.372	2e-25
413932776	941	putative argonaute superfamily protein [	0.991	0.130	0.372	4e-25
218193919	1058	hypothetical protein OsI_13926 [Oryza sa	0.991	0.116	0.324	4e-21
125588271	1024	hypothetical protein OsJ_12979 [Oryza sa	0.991	0.120	0.324	5e-21
75149521	1058	RecName: Full=Protein argonaute MEL1; Al	0.991	0.116	0.324	5e-21
326497697	1039	predicted protein [Hordeum vulgare subsp	0.991	0.118	0.319	6e-21
359481948	1134	PREDICTED: protein argonaute MEL1-like [	0.991	0.108	0.313	1e-20
297740020	851	unnamed protein product [Vitis vinifera]	0.991	0.144	0.313	1e-20
222625939	1205	hypothetical protein OsJ_12892 [Oryza sa	0.991	0.102	0.335	2e-20

>gi|224069720|ref|XP_002326400.1| argonaute protein group [Populus trichocarpa] gi|222833593|gb|EEE72070.1| argonaute protein group [Populus trichocarpa]

 Score =  122 bits (305), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 77/224 (34%), Positives = 99/224 (44%), Gaps = 101/224 (45%)

Query: 1   MKQLLEKHGKTHFNGCLPAYDGRKGFYTAGALPFTSKDFNIKLIDRDESGDIN------- 53
           M++LL  +  THF    PAYDGRKGFYTAG L FTSKDF + L+D+D+ G +        
Sbjct: 62  MRELLASNS-THFQSRKPAYDGRKGFYTAGPLTFTSKDFVVTLVDKDDQGSVRKERKFKV 120

Query: 54  ---------------------------------------------CTVVGRSFFAPGFH- 67
                                                        CT+VGRSFF  G   
Sbjct: 121 TIRLASKTDLYHLKEFLQGRQRGAPHDTIQVLDVVLREPPSNKQVCTIVGRSFFTAGLGG 180

Query: 68  KSEIGFGVECWKGFYQSLRPTQMGMSLNM------------------------------- 96
           ++EIG G+ECWKGFYQSLRPTQMGMSLN+                               
Sbjct: 181 QNEIGNGIECWKGFYQSLRPTQMGMSLNIDVSVAAFYEPILAVDFVAKLLNLGDPIRAAT 240

Query: 97  ----------------GVKVEVAHGESKRYRVSGITSQPTKKLK 124
                           GV+V+V HGE KRY+++GI++  T +L+
Sbjct: 241 RPLSDSDRAKLKKALRGVRVKVTHGEEKRYKITGISASATNQLR 284

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242032667|ref|XP_002463728.1| hypothetical protein SORBIDRAFT_01g004920 [Sorghum bicolor] gi|241917582|gb|EER90726.1| hypothetical protein SORBIDRAFT_01g004920 [Sorghum bicolor]

 Score =  119 bits (299), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 63/169 (37%), Positives = 92/169 (54%), Gaps = 46/169 (27%)

Query: 1   MKQLLEKHGKTHFNGCLPAYDGRKGFYTAGALPFTSKDFNIKLIDRDESGDINCTVVGRS 60
           + +L++ HGKT   G LPAYDGRK  YTAG+LPF S++F + L+D ++    +   V RS
Sbjct: 305 LNELIKLHGKTALGGKLPAYDGRKSLYTAGSLPFESEEFVVTLVDPEKKDKESYVTVSRS 364

Query: 61  FFAPGF-HKSEIGFGVECWKGFYQSLRPTQMGMSLNM----------------------- 96
           FF+  F H+ +IG G+ECW+G+YQSLRPTQMG+SLN+                       
Sbjct: 365 FFSTTFGHRGDIGEGLECWRGYYQSLRPTQMGLSLNIDISATSFFKPVSVIKFVEEYLNM 424

Query: 97  --------------------GVKVEVAHGES--KRYRVSGITSQPTKKL 123
                               GV++E  H +   +RY+++G+TS P  +L
Sbjct: 425 RDTSRPLSDRDRVKIKKALRGVRIETTHQQDQIRRYKITGVTSIPMSQL 473

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|413932776|gb|AFW67327.1| putative argonaute superfamily protein [Zea mays]

 Score =  118 bits (296), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 63/169 (37%), Positives = 91/169 (53%), Gaps = 46/169 (27%)

Query: 1   MKQLLEKHGKTHFNGCLPAYDGRKGFYTAGALPFTSKDFNIKLIDRDESGDINCTVVGRS 60
           + +L++ HGKT   G LPAYDGRK  YTAG+LPF S++F + L+D ++    +   V RS
Sbjct: 266 LNELIKLHGKTSLGGKLPAYDGRKSLYTAGSLPFESEEFVVTLVDPEKKEKESYVTVSRS 325

Query: 61  FFAPGF-HKSEIGFGVECWKGFYQSLRPTQMGMSLNM----------------------- 96
           FF+  F H+ +IG G+ECW+G+YQSLRPTQMG+SLN+                       
Sbjct: 326 FFSTTFGHRGDIGEGLECWRGYYQSLRPTQMGLSLNIDISATSFFKPVTIIKFVEEFLNL 385

Query: 97  --------------------GVKVEVAHGES--KRYRVSGITSQPTKKL 123
                               GV++E  H +   +RY+++GIT  P  +L
Sbjct: 386 RDTSRPLFDRDRVKIKKALRGVRIETTHQQDQIRRYKITGITPIPMSQL 434

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|218193919|gb|EEC76346.1| hypothetical protein OsI_13926 [Oryza sativa Indica Group]

 Score =  105 bits (261), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 71/219 (32%), Positives = 94/219 (42%), Gaps = 96/219 (43%)

Query: 1   MKQLLEKHGKTHFNGCLPAYDGRKGFYTAGALPFTSKDFNIKLID--------------- 45
           + +L++ HGKT   G LPAYDGRK  YTAG+LPF S++F +KLID               
Sbjct: 249 LNELIKLHGKTSLGGKLPAYDGRKSLYTAGSLPFESEEFVVKLIDPEKKDKERAEREYKI 308

Query: 46  ---------------------RD--------------ESGDINCTVVGRSFFAPGF-HKS 69
                                RD              ES   N   V RSFF+  F H+ 
Sbjct: 309 TIRIAGRTDLYHLQQFLLGRQRDMPQETIQVLDVVLRESPSWNYVTVSRSFFSTQFGHRG 368

Query: 70  EIGFGVECWKGFYQSLRPTQMGMSLNM--------------------------------- 96
           +IG G+ECW+G+YQSLRPTQMG+SLN+                                 
Sbjct: 369 DIGEGLECWRGYYQSLRPTQMGLSLNIDISATSFFKPVTVIQFVEEFLNIRDTSRPLSDR 428

Query: 97  ----------GVKVEVAHGES--KRYRVSGITSQPTKKL 123
                     GV++E  H E   +RY+++GIT  P  +L
Sbjct: 429 DRVKIKKALRGVRIETNHQEDQIRRYKITGITPIPMSQL 467

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|125588271|gb|EAZ28935.1| hypothetical protein OsJ_12979 [Oryza sativa Japonica Group]

 Score =  105 bits (261), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 71/219 (32%), Positives = 94/219 (42%), Gaps = 96/219 (43%)

Query: 1   MKQLLEKHGKTHFNGCLPAYDGRKGFYTAGALPFTSKDFNIKLID--------------- 45
           + +L++ HGKT   G LPAYDGRK  YTAG+LPF S++F +KLID               
Sbjct: 214 LNELIKLHGKTSLGGKLPAYDGRKSLYTAGSLPFESEEFVVKLIDPEKKDKERAEREYKI 273

Query: 46  ---------------------RD--------------ESGDINCTVVGRSFFAPGF-HKS 69
                                RD              ES   N   V RSFF+  F H+ 
Sbjct: 274 TIRIAGRTDLYHLQQFLLGRQRDMPQETIQVLDVVLRESPSWNYVTVSRSFFSTQFGHRG 333

Query: 70  EIGFGVECWKGFYQSLRPTQMGMSLNM--------------------------------- 96
           +IG G+ECW+G+YQSLRPTQMG+SLN+                                 
Sbjct: 334 DIGEGLECWRGYYQSLRPTQMGLSLNIDISATSFFKPVTVIQFVEEFLNIRDTSRPLSDR 393

Query: 97  ----------GVKVEVAHGES--KRYRVSGITSQPTKKL 123
                     GV++E  H E   +RY+++GIT  P  +L
Sbjct: 394 DRVKIKKALRGVRIETNHQEDQIRRYKITGITPIPMSQL 432

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|75149521|sp|Q851R2.1|MEL1_ORYSJ RecName: Full=Protein argonaute MEL1; AltName: Full=Protein MEIOSIS ARRESTED AT LEPTOTENE 1; Short=OsMEL1 gi|28209520|gb|AAO37538.1| putative argonaute protein [Oryza sativa Japonica Group] gi|108711587|gb|ABF99382.1| Argonaute-like protein At2g27880, putative, expressed [Oryza sativa Japonica Group] gi|157279696|dbj|BAF80153.1| ARGONAUTE family protein [Oryza sativa Japonica Group]

 Score =  105 bits (261), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 71/219 (32%), Positives = 94/219 (42%), Gaps = 96/219 (43%)

Query: 1   MKQLLEKHGKTHFNGCLPAYDGRKGFYTAGALPFTSKDFNIKLID--------------- 45
           + +L++ HGKT   G LPAYDGRK  YTAG+LPF S++F +KLID               
Sbjct: 249 LNELIKLHGKTSLGGKLPAYDGRKSLYTAGSLPFESEEFVVKLIDPEKKDKERAEREYKI 308

Query: 46  ---------------------RD--------------ESGDINCTVVGRSFFAPGF-HKS 69
                                RD              ES   N   V RSFF+  F H+ 
Sbjct: 309 TIRIAGRTDLYHLQQFLLGRQRDMPQETIQVLDVVLRESPSWNYVTVSRSFFSTQFGHRG 368

Query: 70  EIGFGVECWKGFYQSLRPTQMGMSLNM--------------------------------- 96
           +IG G+ECW+G+YQSLRPTQMG+SLN+                                 
Sbjct: 369 DIGEGLECWRGYYQSLRPTQMGLSLNIDISATSFFKPVTVIQFVEEFLNIRDTSRPLSDR 428

Query: 97  ----------GVKVEVAHGES--KRYRVSGITSQPTKKL 123
                     GV++E  H E   +RY+++GIT  P  +L
Sbjct: 429 DRVKIKKALRGVRIETNHQEDQIRRYKITGITPIPMSQL 467

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|326497697|dbj|BAK05938.1| predicted protein [Hordeum vulgare subsp. vulgare]

 Score =  104 bits (260), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 70/219 (31%), Positives = 94/219 (42%), Gaps = 96/219 (43%)

Query: 1   MKQLLEKHGKTHFNGCLPAYDGRKGFYTAGALPFTSKDFNIKLID--------------- 45
           + +L++ HGKT   G LPAYDGRK  YTAG+LPF S++F++ L+D               
Sbjct: 227 LSELIKVHGKTSLGGKLPAYDGRKSLYTAGSLPFESEEFSVTLVDPEKKDKERAEREYKI 286

Query: 46  ---------------------RD--------------ESGDINCTVVGRSFFAPGF-HKS 69
                                RD              ES   N   V RSFF+  F H+ 
Sbjct: 287 TIRIAGRTDLYHLQQFLKGRQRDMPQETIQVLDVVLRESPSWNYVTVSRSFFSTTFGHRG 346

Query: 70  EIGFGVECWKGFYQSLRPTQMGMSLNM--------------------------------- 96
           +IG G+ECW+G+YQSLRPTQMG+SLN+                                 
Sbjct: 347 DIGEGLECWRGYYQSLRPTQMGLSLNIDISATSFFKPVTVVQFVLEFLNLRDASRPLTDR 406

Query: 97  ----------GVKVEVAHGES--KRYRVSGITSQPTKKL 123
                     GV+VE  H E   +RY+++GIT  P  +L
Sbjct: 407 DRVKIKKALRGVRVETNHQEDQIRRYKITGITPIPMSQL 445

Source: Hordeum vulgare subsp. vulgare

Species: Hordeum vulgare

Genus: Hordeum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359481948|ref|XP_002264527.2| PREDICTED: protein argonaute MEL1-like [Vitis vinifera]

 Score =  103 bits (257), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 70/223 (31%), Positives = 94/223 (42%), Gaps = 100/223 (44%)

Query: 1   MKQLLEKHGKTHFNGCLPAYDGRKGFYTAGALPFTSKDFNIKL----------------- 43
           +K+L+  +G++H     PAYDGR+G YTAG LPFTSK+F IKL                 
Sbjct: 315 IKELVHLYGQSHLYRN-PAYDGRRGIYTAGPLPFTSKEFMIKLEEGNDGTHERKKKEFIV 373

Query: 44  ----------------------------------IDRDESGDINCTVVGRSFFAPGF-HK 68
                                             + +D   +  CT+ G++FF  G   +
Sbjct: 374 KIRFATSTDIHNLREFLLSRQSNVPYEIIHALDVVLKDSLSNNRCTLSGKTFFPLGLGAR 433

Query: 69  SEIGFGVECWKGFYQSLRPTQMGMSLNM-------------------------------- 96
           SEIG GV+CW GFYQSLRPTQMG+SLN+                                
Sbjct: 434 SEIGNGVQCWNGFYQSLRPTQMGLSLNIDVSSKSFYEPIPVIEFAAKFLNLEDPSIMARM 493

Query: 97  ---------------GVKVEVAHGESKRYRVSGITSQPTKKLK 124
                          G+KVEV HG  +RY++  IT QPT +L+
Sbjct: 494 PLSNDDRLKLKKVLKGIKVEVTHGGQRRYKIFDITEQPTNQLR 536

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297740020|emb|CBI30202.3| unnamed protein product [Vitis vinifera]

 Score =  103 bits (257), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 70/223 (31%), Positives = 94/223 (42%), Gaps = 100/223 (44%)

Query: 1   MKQLLEKHGKTHFNGCLPAYDGRKGFYTAGALPFTSKDFNIKL----------------- 43
           +K+L+  +G++H     PAYDGR+G YTAG LPFTSK+F IKL                 
Sbjct: 58  IKELVHLYGQSHLYRN-PAYDGRRGIYTAGPLPFTSKEFMIKLEEGNDGTHERKKKEFIV 116

Query: 44  ----------------------------------IDRDESGDINCTVVGRSFFAPGF-HK 68
                                             + +D   +  CT+ G++FF  G   +
Sbjct: 117 KIRFATSTDIHNLREFLLSRQSNVPYEIIHALDVVLKDSLSNNRCTLSGKTFFPLGLGAR 176

Query: 69  SEIGFGVECWKGFYQSLRPTQMGMSLNM-------------------------------- 96
           SEIG GV+CW GFYQSLRPTQMG+SLN+                                
Sbjct: 177 SEIGNGVQCWNGFYQSLRPTQMGLSLNIDVSSKSFYEPIPVIEFAAKFLNLEDPSIMARM 236

Query: 97  ---------------GVKVEVAHGESKRYRVSGITSQPTKKLK 124
                          G+KVEV HG  +RY++  IT QPT +L+
Sbjct: 237 PLSNDDRLKLKKVLKGIKVEVTHGGQRRYKIFDITEQPTNQLR 279

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|222625939|gb|EEE60071.1| hypothetical protein OsJ_12892 [Oryza sativa Japonica Group]

 Score =  102 bits (255), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 65/194 (33%), Positives = 91/194 (46%), Gaps = 71/194 (36%)

Query: 1   MKQLLEKHGKTHFNGCLPAYDGRKGFYTAGALPFTSKDFNIKLIDRDESG--------DI 52
           + +L++ HGKT   G LPAYDGRK  YTAG+LPF S++F +KLID ++           I
Sbjct: 105 LNELIKLHGKTSLGGKLPAYDGRKSLYTAGSLPFESEEFVVKLIDPEKKDKERAEREYKI 164

Query: 53  NCTVVGRSFF-------------APGF-----HKSEIGFGVECWKGFYQSLRPTQMGMSL 94
              + GR+ F              P       H+ +IG G+ECW+G+YQSLRPTQMG+SL
Sbjct: 165 TIRIAGRTDFYHLQQFLLGRQRDMPQETIQFGHRGDIGEGLECWRGYYQSLRPTQMGLSL 224

Query: 95  NM-------------------------------------------GVKVEVAHGES--KR 109
           N+                                           GV++E  H E   +R
Sbjct: 225 NIDISATSFFKPVTVIQFVEEFLNIRDTSRPLSDRDRVKIKKALRGVRIETNHQEDQIRR 284

Query: 110 YRVSGITSQPTKKL 123
           Y+++GIT  P  +L
Sbjct: 285 YKITGITPIPMSQL 298

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	124
UNIPROTKB|Q851R2	1058	MEL1 "Protein argonaute MEL1"	0.411	0.048	0.576	1.3e-27
TAIR|locus:2170897	988	AGO10 "ARGONAUTE 10" [Arabidop	0.322	0.040	0.609	9.4e-25
UNIPROTKB|Q69VD5	979	PHN1 "Protein argonaute PNH1"	0.322	0.040	0.560	6.1e-24
UNIPROTKB|Q5TA58	782	EIF2C1 "Protein argonaute-1" [	0.346	0.054	0.5	4.8e-13
UNIPROTKB|F1P3Y9	853	EIF2C1 "Uncharacterized protei	0.346	0.050	0.5	5.1e-13
UNIPROTKB|F1PGP5	857	EIF2C1 "Uncharacterized protei	0.346	0.050	0.5	5.2e-13
UNIPROTKB|Q9UL18	857	EIF2C1 "Protein argonaute-1" [	0.346	0.050	0.5	5.2e-13
UNIPROTKB|F1SV63	857	EIF2C1 "Uncharacterized protei	0.346	0.050	0.5	5.2e-13
MGI|MGI:2446630	857	Ago1 "argonaute RISC catalytic	0.346	0.050	0.5	5.2e-13
RGD|1304619	857	Ago1 "argonaute RISC catalytic	0.346	0.050	0.5	5.2e-13

UNIPROTKB|Q851R2 MEL1 "Protein argonaute MEL1" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 162 (62.1 bits), Expect = 1.3e-27, Sum P(3) = 1.3e-27
 Identities = 30/52 (57%), Positives = 39/52 (75%)

Query:    48 ESGDINCTVVGRSFFAPGF-HKSEIGFGVECWKGFYQSLRPTQMGMSLNMGV 98
             ES   N   V RSFF+  F H+ +IG G+ECW+G+YQSLRPTQMG+SLN+ +
Sbjct:   346 ESPSWNYVTVSRSFFSTQFGHRGDIGEGLECWRGYYQSLRPTQMGLSLNIDI 397

GO:0005730 "nucleolus" evidence=IMP

GO:0005731 "nucleolus organizer region" evidence=IMP

GO:0005737 "cytoplasm" evidence=RCA

GO:0007140 "male meiosis" evidence=IMP

GO:0007143 "female meiosis" evidence=IMP

GO:0009561 "megagametogenesis" evidence=IMP

GO:0033169 "histone H3-K9 demethylation" evidence=IDA

GO:0035197 "siRNA binding" evidence=ISS

GO:0055046 "microgametogenesis" evidence=IMP

TAIR|locus:2170897 AGO10 "ARGONAUTE 10" [Arabidopsis thaliana (taxid:3702)]

 Score = 132 (51.5 bits), Expect = 9.4e-25, Sum P(3) = 9.4e-25
 Identities = 25/41 (60%), Positives = 32/41 (78%)

Query:    57 VGRSFFAPGFHKSE-IGFGVECWKGFYQSLRPTQMGMSLNM 96
             VGRSFF+P     + +G G+E W GFYQS+RPTQMG+SLN+
Sbjct:   286 VGRSFFSPDIKTPQRLGEGLESWCGFYQSIRPTQMGLSLNI 326

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0003743 "translation initiation factor activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM;ISS

GO:0035019 "somatic stem cell maintenance" evidence=IMP

GO:0010586 "miRNA metabolic process" evidence=IMP

GO:0035198 "miRNA binding" evidence=IDA

GO:0006346 "methylation-dependent chromatin silencing" evidence=RCA

GO:0007267 "cell-cell signaling" evidence=RCA

GO:0009616 "virus induced gene silencing" evidence=RCA

GO:0009855 "determination of bilateral symmetry" evidence=RCA

GO:0009887 "organ morphogenesis" evidence=RCA

GO:0009944 "polarity specification of adaxial/abaxial axis" evidence=RCA

GO:0010014 "meristem initiation" evidence=RCA

GO:0010050 "vegetative phase change" evidence=RCA

GO:0010051 "xylem and phloem pattern formation" evidence=RCA

GO:0010073 "meristem maintenance" evidence=RCA

GO:0010267 "production of ta-siRNAs involved in RNA interference" evidence=RCA

GO:0016246 "RNA interference" evidence=RCA

GO:0035196 "production of miRNAs involved in gene silencing by miRNA" evidence=RCA

GO:0048439 "flower morphogenesis" evidence=RCA

GO:0048519 "negative regulation of biological process" evidence=RCA

UNIPROTKB|Q69VD5 PHN1 "Protein argonaute PNH1" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 132 (51.5 bits), Expect = 6.1e-24, Sum P(3) = 6.1e-24
 Identities = 23/41 (56%), Positives = 33/41 (80%)

Query:    57 VGRSFFAPGFHKSE-IGFGVECWKGFYQSLRPTQMGMSLNM 96
             +GRSF++P   K + +G G++ W GFYQS+RPTQMG+SLN+
Sbjct:   281 IGRSFYSPDIRKPQRLGDGLQSWCGFYQSIRPTQMGLSLNI 321

GO:0003743 "translation initiation factor activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=IDA

GO:0006413 "translational initiation" evidence=ISS

GO:0019827 "stem cell maintenance" evidence=IMP

GO:0048366 "leaf development" evidence=IMP

UNIPROTKB|Q5TA58 EIF2C1 "Protein argonaute-1" [Homo sapiens (taxid:9606)]

 Score = 102 (41.0 bits), Expect = 4.8e-13, Sum P(3) = 4.8e-13
 Identities = 23/46 (50%), Positives = 30/46 (65%)

Query:    55 TVVGRSFFAP--GFHKSEIGFGVECWKGFYQSLRPTQMGMSLNMGV 98
             T VGRSFF+P  G++   +G G E W GF+QS+RP    M LN+ V
Sbjct:    98 TPVGRSFFSPPEGYYHP-LGGGREVWFGFHQSVRPAMWKMMLNIDV 142

GO:0000932 "cytoplasmic mRNA processing body" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

UNIPROTKB|F1P3Y9 EIF2C1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 102 (41.0 bits), Expect = 5.1e-13, Sum P(3) = 5.1e-13
 Identities = 23/46 (50%), Positives = 30/46 (65%)

Query:    55 TVVGRSFFAP--GFHKSEIGFGVECWKGFYQSLRPTQMGMSLNMGV 98
             T VGRSFF+P  G++   +G G E W GF+QS+RP    M LN+ V
Sbjct:   167 TPVGRSFFSPPEGYYHP-LGGGREVWFGFHQSVRPAMWKMMLNIDV 211

GO:0000932 "cytoplasmic mRNA processing body" evidence=IEA

GO:0000956 "nuclear-transcribed mRNA catabolic process" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0005844 "polysome" evidence=IEA

GO:0035068 "micro-ribonucleoprotein complex" evidence=IEA

GO:0035278 "negative regulation of translation involved in gene silencing by miRNA" evidence=IEA

UNIPROTKB|F1PGP5 EIF2C1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 102 (41.0 bits), Expect = 5.2e-13, Sum P(3) = 5.2e-13
 Identities = 23/46 (50%), Positives = 30/46 (65%)

Query:    55 TVVGRSFFAP--GFHKSEIGFGVECWKGFYQSLRPTQMGMSLNMGV 98
             T VGRSFF+P  G++   +G G E W GF+QS+RP    M LN+ V
Sbjct:   173 TPVGRSFFSPPEGYYHP-LGGGREVWFGFHQSVRPAMWKMMLNIDV 217

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|Q9UL18 EIF2C1 "Protein argonaute-1" [Homo sapiens (taxid:9606)]

 Score = 102 (41.0 bits), Expect = 5.2e-13, Sum P(3) = 5.2e-13
 Identities = 23/46 (50%), Positives = 30/46 (65%)

Query:    55 TVVGRSFFAP--GFHKSEIGFGVECWKGFYQSLRPTQMGMSLNMGV 98
             T VGRSFF+P  G++   +G G E W GF+QS+RP    M LN+ V
Sbjct:   173 TPVGRSFFSPPEGYYHP-LGGGREVWFGFHQSVRPAMWKMMLNIDV 217

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0000932 "cytoplasmic mRNA processing body" evidence=IEA

GO:0000956 "nuclear-transcribed mRNA catabolic process" evidence=IDA

GO:0035278 "negative regulation of translation involved in gene silencing by miRNA" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005844 "polysome" evidence=IDA

GO:0030529 "ribonucleoprotein complex" evidence=IDA

GO:0035068 "micro-ribonucleoprotein complex" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005829 "cytosol" evidence=TAS

GO:0007219 "Notch signaling pathway" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

UNIPROTKB|F1SV63 EIF2C1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 102 (41.0 bits), Expect = 5.2e-13, Sum P(3) = 5.2e-13
 Identities = 23/46 (50%), Positives = 30/46 (65%)

Query:    55 TVVGRSFFAP--GFHKSEIGFGVECWKGFYQSLRPTQMGMSLNMGV 98
             T VGRSFF+P  G++   +G G E W GF+QS+RP    M LN+ V
Sbjct:   173 TPVGRSFFSPPEGYYHP-LGGGREVWFGFHQSVRPAMWKMMLNIDV 217

GO:0035278 "negative regulation of translation involved in gene silencing by miRNA" evidence=IEA

GO:0035068 "micro-ribonucleoprotein complex" evidence=IEA

GO:0005844 "polysome" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0000956 "nuclear-transcribed mRNA catabolic process" evidence=IEA

GO:0000932 "cytoplasmic mRNA processing body" evidence=IEA

MGI|MGI:2446630 Ago1 "argonaute RISC catalytic subunit 1" [Mus musculus (taxid:10090)]

 Score = 102 (41.0 bits), Expect = 5.2e-13, Sum P(3) = 5.2e-13
 Identities = 23/46 (50%), Positives = 30/46 (65%)

Query:    55 TVVGRSFFAP--GFHKSEIGFGVECWKGFYQSLRPTQMGMSLNMGV 98
             T VGRSFF+P  G++   +G G E W GF+QS+RP    M LN+ V
Sbjct:   173 TPVGRSFFSPPEGYYHP-LGGGREVWFGFHQSVRPAMWKMMLNIDV 217

GO:0000932 "cytoplasmic mRNA processing body" evidence=IDA

GO:0000956 "nuclear-transcribed mRNA catabolic process" evidence=ISO

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0003723 "RNA binding" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=ISO

GO:0005844 "polysome" evidence=ISO

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006417 "regulation of translation" evidence=IEA

GO:0030529 "ribonucleoprotein complex" evidence=ISO

GO:0031047 "gene silencing by RNA" evidence=IEA

GO:0035068 "micro-ribonucleoprotein complex" evidence=ISO;IDA

GO:0035278 "negative regulation of translation involved in gene silencing by miRNA" evidence=ISO

RGD|1304619 Ago1 "argonaute RISC catalytic component 1" [Rattus norvegicus (taxid:10116)]

 Score = 102 (41.0 bits), Expect = 5.2e-13, Sum P(3) = 5.2e-13
 Identities = 23/46 (50%), Positives = 30/46 (65%)

Query:    55 TVVGRSFFAP--GFHKSEIGFGVECWKGFYQSLRPTQMGMSLNMGV 98
             T VGRSFF+P  G++   +G G E W GF+QS+RP    M LN+ V
Sbjct:   173 TPVGRSFFSPPEGYYHP-LGGGREVWFGFHQSVRPAMWKMMLNIDV 217

GO:0000932 "cytoplasmic mRNA processing body" evidence=IEA;ISO

GO:0000956 "nuclear-transcribed mRNA catabolic process" evidence=IEA;ISO

GO:0003674 "molecular_function" evidence=ND

GO:0003723 "RNA binding" evidence=IEA;ISO

GO:0005575 "cellular_component" evidence=ND

GO:0005737 "cytoplasm" evidence=ISO

GO:0005844 "polysome" evidence=IEA;ISO

GO:0008150 "biological_process" evidence=ND

GO:0030529 "ribonucleoprotein complex" evidence=ISO

GO:0035068 "micro-ribonucleoprotein complex" evidence=IEA;ISO

GO:0035278 "negative regulation of translation involved in gene silencing by miRNA" evidence=IEA;ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	124
pfam08699	52	pfam08699, DUF1785, Domain of unknown function (DU	8e-19
PLN03202	900	PLN03202, PLN03202, protein argonaute; Provisional	5e-07

>gnl|CDD|219976 pfam08699, DUF1785, Domain of unknown function (DUF1785)

 Score = 73.4 bits (181), Expect = 8e-19
 Identities = 24/46 (52%), Positives = 33/46 (71%)

Query: 55  TVVGRSFFAPGFHKSEIGFGVECWKGFYQSLRPTQMGMSLNMGVKV 100
             VGRSFF+  F   ++G G+E W+GF+QS+RPTQ G+SLN+ V  
Sbjct: 1   IAVGRSFFSISFGHRDLGGGLEAWRGFFQSVRPTQGGLSLNVDVST 46

This region is found in argonaute proteins and often co-occurs with pfam02179 and pfam02171. Length = 52

>gnl|CDD|215631 PLN03202, PLN03202, protein argonaute; Provisional

 Score = 46.6 bits (111), Expect = 5e-07
 Identities = 21/57 (36%), Positives = 32/57 (56%), Gaps = 1/57 (1%)

Query: 43  LIDRDESGDINCTVVGRSFF-APGFHKSEIGFGVECWKGFYQSLRPTQMGMSLNMGV 98
           +I R  +    C +V +SFF     +  ++G GV   +GF+ S R TQ G+SLN+ V
Sbjct: 203 IILRQHAAKQGCLLVRQSFFHNDPKNFVDLGGGVLGCRGFHSSFRTTQGGLSLNIDV 259

Length = 900

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	124
PLN03202	900	protein argonaute; Provisional	99.85
PF08699	52	DUF1785: Domain of unknown function (DUF1785); Int	99.74
KOG1041	876	consensus Translation initiation factor 2C (eIF-2C	99.66
KOG1042	845	consensus Germ-line stem cell division protein Hiw	98.23
cd02825	115	PAZ PAZ domain, named PAZ after the proteins Piwi	92.8
cd02846	114	PAZ_argonaute_like PAZ domain, argonaute_like subf	91.28
PF02170	135	PAZ: PAZ domain; InterPro: IPR003100 This domain i	84.49

>PLN03202 protein argonaute; Provisional

Probab=99.85  E-value=3.8e-21  Score=170.35  Aligned_cols=120  Identities=33%  Similarity=0.563  Sum_probs=96.0

Q ss_pred             hHHHHhhccCCCCCCCceEeCCCceeecCCCCCCCceEEEEecCC----------------------------CCC----
Q 046499            2 KQLLEKHGKTHFNGCLPAYDGRKGFYTAGALPFTSKDFNIKLIDR----------------------------DES----   49 (124)
Q Consensus         2 ~~l~~~~~~~~f~~~~~ayDG~k~lyt~~~L~~~~~~f~V~l~~~----------------------------~~~----   49 (124)
                      ++++++++. .+.+..+||||+++|||+++||++..+|.|+++++                            .++    
T Consensus        90 ~~~~~~~~~-~~~~~~~~~Dg~~~l~s~~~L~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (900)
T PLN03202         90 DKVQETYSS-DLAGKDFAYDGEKSLFTVGALPQNKLEFTVVLEDVSSNRNNGNGSPVGNGSPNGGDRKRSRRPYQSKTFK  168 (900)
T ss_pred             HHHHHhhHH-hhCCCceeecCccceEECccCCCCCceEEEEecccccccccccccccccCCccccccccccccCCCceEE
Confidence            456666653 36666799999999999999998666777766531                            000    


Q ss_pred             ----------------------------------------Ccc-ceeeecccccCCCCC-CccCCCcEEEEeeeeeeeec
Q 046499           50 ----------------------------------------GDI-NCTVVGRSFFAPGFH-KSEIGFGVECWKGFYQSLRP   87 (124)
Q Consensus        50 ----------------------------------------~s~-~~~~vgrsff~~~~~-~~~Lg~G~e~w~Gf~qSvR~   87 (124)
                                                              ++. +++.+||+||.+... ..+||+|+|+|+|||+||||
T Consensus       169 v~i~~~~~i~~~~L~~~l~~~~~~~~~~~iq~lnivlr~~~~~~~~~~~gr~ff~~~~~~~~~l~~gle~~~G~~~Svr~  248 (900)
T PLN03202        169 VEISFAAKIPMQAIANALRGQESENSQDALRVLDIILRQHAAKQGCLLVRQSFFHNDPKNFVDLGGGVLGCRGFHSSFRT  248 (900)
T ss_pred             EEEEEccccCHHHHHHHHcCCCCCCcHHHHHHHHHHHhhhhhhCCCceeccccCCCCCcccccCCCceEEeeeeeeEeee
Confidence                                                    223 478899999976533 56899999999999999999


Q ss_pred             cCCceEEEe---------------------------------------ecEEEEeeCCCceeEEecCCCcccccC
Q 046499           88 TQMGMSLNM---------------------------------------GVKVEVAHGESKRYRVSGITSQPTKKL  123 (124)
Q Consensus        88 ~~~~l~LNv---------------------------------------g~kv~~~h~~~~~y~i~gls~~pa~~~  123 (124)
                      ++++|+|||                                       |++|.++|.+. .|+|.+|+..+|.++
T Consensus       249 ~~~~l~LnvDvs~~~F~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~lkGl~V~t~~~~k-~yrI~~i~~~~a~~~  322 (900)
T PLN03202        249 TQGGLSLNIDVSTTMIVQPGPVVDFLIANQNVRDPFQIDWSKAKRMLKNLRVKVSPSNQ-EYKITGLSEKPCKEQ  322 (900)
T ss_pred             ccCceEEeeeeeeeeeecCCcHHHHHHHhcCcCCccchhHHHHHHHhcCCEEEEecCCc-eEEEeeccCCCCcce
Confidence            999999999                                       89999999865 899999999888765

>PF08699 DUF1785: Domain of unknown function (DUF1785); InterPro: IPR014811 This region is found in argonaute [] proteins and often co-occurs with IPR003103 from INTERPRO and IPR003165 from INTERPRO

Probab=99.74  E-value=1.1e-18  Score=105.80  Aligned_cols=43  Identities=53%  Similarity=0.977  Sum_probs=34.6

Q ss_pred             eeecccccCCCCCCccCCCcEEEEeeeeeeeeccCCceEEEee
Q 046499           55 TVVGRSFFAPGFHKSEIGFGVECWKGFYQSLRPTQMGMSLNMG   97 (124)
Q Consensus        55 ~~vgrsff~~~~~~~~Lg~G~e~w~Gf~qSvR~~~~~l~LNvg   97 (124)
                      +.+|||||+++.+..+||+|+|+|+|||||+||++++|+|||-
T Consensus         1 ~~vgrsFF~~~~~~~~l~~Gle~~rG~~qSvRp~~~~l~lNvD   43 (52)
T PF08699_consen    1 TAVGRSFFPPSGGPVDLGGGLEAWRGFFQSVRPTQGGLLLNVD   43 (52)
T ss_dssp             EEETTEEEE------EEETTEEEEEEEEEEEEEETTEEEEEEE
T ss_pred             CccccccCCCCCCCccCCCcEEEeEeEEeeeEEcCCCCEEEEe
Confidence            4689999987643579999999999999999999999999983

; PDB: 1R6Z_P 3MJ0_A 4EI1_A 4F3T_A 4EI3_A 1R4K_A.

>KOG1041 consensus Translation initiation factor 2C (eIF-2C) and related proteins [Translation, ribosomal structure and biogenesis]

Probab=99.66  E-value=3.5e-16  Score=138.55  Aligned_cols=117  Identities=37%  Similarity=0.612  Sum_probs=89.2

Q ss_pred             hccCCCCCCCceEeCCCceeecCCCCC--CCceEEEEecCCCC----------C--------------------------
Q 046499            8 HGKTHFNGCLPAYDGRKGFYTAGALPF--TSKDFNIKLIDRDE----------S--------------------------   49 (124)
Q Consensus         8 ~~~~~f~~~~~ayDG~k~lyt~~~L~~--~~~~f~V~l~~~~~----------~--------------------------   49 (124)
                      .+...|....++|||+++|||..+||.  ...+|.|.+..+..          .                          
T Consensus       106 ~~~~~~~~~~~~YDg~~~lyt~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld  185 (876)
T KOG1041|consen  106 PELFELKSGGPAYDGQKTLYTKLELPEGVVTLDFDVISPKEWKKFKVSIKKVSEVVLTKLNGFIYTRGENAPRDANQTLD  185 (876)
T ss_pred             cccccccCCcccccCCceeEeccccccccceEEEEecCCCCCcceEEEEEecccccccCccccccCccccCchhHHHHHH
Confidence            333447777888999999999888883  22223333322211          0                          


Q ss_pred             ------Cccc-eeeecccccCCCC-CCccCCCcEEEEeeeeeeeeccCCceEEEe-------------------------
Q 046499           50 ------GDIN-CTVVGRSFFAPGF-HKSEIGFGVECWKGFYQSLRPTQMGMSLNM-------------------------   96 (124)
Q Consensus        50 ------~s~~-~~~vgrsff~~~~-~~~~Lg~G~e~w~Gf~qSvR~~~~~l~LNv-------------------------   96 (124)
                            ++.. +..++++||..+. ....||+|.|+|.|||||+|+++++++||+                         
T Consensus       186 ~~~~~~~s~~~~~~~~~sff~~~~~~~~~l~~g~e~~~Gf~~s~r~~~~~~~l~id~~~~~F~k~~~~~~~l~~~~~~~~  265 (876)
T KOG1041|consen  186 VVLREIATSQGLNNVGYSFFGNDTREPAKLGGGVEIWEGFHKSIRPTQGGLSLNIDVKTTAFYKGTPVIEFLKKILEIKT  265 (876)
T ss_pred             HHHHhhhchhcccccchheecCCCCCccccCCCceeeeeeeeeeeeccCceEEeeeeeeeeeecCcchHHHHHhhhcCcc
Confidence                  4444 8999999998622 255699999999999999999999999999                         


Q ss_pred             ----------------ecEEEEeeCCCc-eeEEecCCCcccccCC
Q 046499           97 ----------------GVKVEVAHGESK-RYRVSGITSQPTKKLK  124 (124)
Q Consensus        97 ----------------g~kv~~~h~~~~-~y~i~gls~~pa~~~~  124 (124)
                                      ||+|+++|++.. .|+|.+|+..||++++
T Consensus       266 ~~~~~~~~~~~~~~lkgL~v~~~h~~~~r~~~i~~l~~~~a~~~~  310 (876)
T KOG1041|consen  266 RAFHKDRPLDIKKALKGLKVYVTHGKRKRKIKIMGLSKKPAKNTT  310 (876)
T ss_pred             cccccccchhHHHHhhCcEEEEecccCcceEEEecccCCcccCce
Confidence                            899999995544 8999999999999874

>KOG1042 consensus Germ-line stem cell division protein Hiwi/Piwi; negative developmental regulator [Cell cycle control, cell division, chromosome partitioning]

Probab=98.23  E-value=1e-06  Score=76.18  Aligned_cols=115  Identities=24%  Similarity=0.419  Sum_probs=81.7

Q ss_pred             HHHHhhccCCCCCCCceEeCCCceeecCCCCC----------CCceEEEEecCCCC-----C--------------Cccc
Q 046499            3 QLLEKHGKTHFNGCLPAYDGRKGFYTAGALPF----------TSKDFNIKLIDRDE-----S--------------GDIN   53 (124)
Q Consensus         3 ~l~~~~~~~~f~~~~~ayDG~k~lyt~~~L~~----------~~~~f~V~l~~~~~-----~--------------~s~~   53 (124)
                      .++.+|. +.+ +.-.|||| .+||..+++..          ++.++.++++..+.     +              -..+
T Consensus       131 ~~L~~h~-~li-g~~~~FDG-~iLfl~~k~eq~~tel~~ks~~ge~i~I~ik~~~~~~~t~p~~iqv~NlI~RR~~k~L~  207 (845)
T KOG1042|consen  131 ALLYNHT-DLI-GKGYAFDG-TILFLKEKFEQKQTELVSKSRDGELIKITIKLTNELPSTDPQCIQVFNLILRRSMKGLN  207 (845)
T ss_pred             HHHHHhH-hhh-ccceeecc-eeehhhHHHhhhhheeecccCCCceEEEEEEEeccccCCChhHHHHHHHHHHHHHhhcc
Confidence            3555653 444 45679999 89999999864          23456666654432     1              1246


Q ss_pred             eeeecccccCCCCCCccCC-CcEEEEeeeeeeeeccCCceEEEe-----------------------------------e
Q 046499           54 CTVVGRSFFAPGFHKSEIG-FGVECWKGFYQSLRPTQMGMSLNM-----------------------------------G   97 (124)
Q Consensus        54 ~~~vgrsff~~~~~~~~Lg-~G~e~w~Gf~qSvR~~~~~l~LNv-----------------------------------g   97 (124)
                      ...+||+||.+.. +.+|. .-+++|.||-.|||..+..++|++                                   |
T Consensus       208 L~qigRnyynp~~-~i~ip~~km~lwPGy~tSIrq~E~~illctei~hKvmR~ETvy~~m~~~~~~~~~~qe~~~~~~~g  286 (845)
T KOG1042|consen  208 LTQIGRNYYDPRA-KIEIPEFKMSLWPGYETSIRQHENDILLCTEISHKVMRTETVYDIMRSCQHNTQRFQETVNKNVIG  286 (845)
T ss_pred             HHHhhhccCCCCc-ccccccccceecCcchhHHHHhhhceeeehhhhhhHhhhhHHHHHHHHHhhCHHHHHHHHHHHhcc
Confidence            6789999998764 66776 578999999999999999999998                                   7


Q ss_pred             cEEEEeeCCCceeEEecC--CCccccc
Q 046499           98 VKVEVAHGESKRYRVSGI--TSQPTKK  122 (124)
Q Consensus        98 ~kv~~~h~~~~~y~i~gl--s~~pa~~  122 (124)
                      +-|-+.+-+. .|||..+  +..|.++
T Consensus       287 livLT~YNNk-tyriddvD~~~tP~st  312 (845)
T KOG1042|consen  287 LIVLTRYNNK-TYRIDDVDFSQTPLST  312 (845)
T ss_pred             eEEEEecCCc-eeeeeccccCcCccce
Confidence            8777766443 7888754  4445443

>cd02825 PAZ PAZ domain, named PAZ after the proteins Piwi Argonaut and Zwille

Probab=92.80  E-value=0.081  Score=36.20  Aligned_cols=26  Identities=35%  Similarity=0.440  Sum_probs=22.6

Q ss_pred             ecEEEEeeCCCc-eeEEecCCCccccc
Q 046499           97 GVKVEVAHGESK-RYRVSGITSQPTKK  122 (124)
Q Consensus        97 g~kv~~~h~~~~-~y~i~gls~~pa~~  122 (124)
                      |++|+++|++.. .|+|.+++..+|.+
T Consensus        35 g~~V~~~h~~~~r~y~i~~i~~~~a~~   61 (115)
T cd02825          35 GLKVEDTHNPLNRVYRPDGETRLKAPS   61 (115)
T ss_pred             CCEEEEecCCCceEEEEeeEECCCChh
Confidence            999999998544 89999999988875

PAZ is found in two families of proteins that are essential components of RNA-mediated gene-silencing pathways, including RNA interference, the piwi and Dicer families. PAZ functions as a nucleic-acid binding domain, with a strong preference for single-stranded nucleic acids (RNA or DNA) or RNA duplexes with single-stranded 3' overhangs. It has been suggested that the PAZ domain provides a unique mode for the recognition of the two 3'-terminal nucleotides in single-stranded nucleic acids and buries the 3' OH group, and that it might recognize characteristic 3' overhangs in siRNAs within RISC (RNA-induced silencing) and other complexes. This parent model also contains structures of an archaeal PAZ domain.

>cd02846 PAZ_argonaute_like PAZ domain, argonaute_like subfamily

Probab=91.28  E-value=0.2  Score=33.80  Aligned_cols=27  Identities=33%  Similarity=0.816  Sum_probs=22.4

Q ss_pred             ecEEEEeeCCCc--eeEEecCCCcccccC
Q 046499           97 GVKVEVAHGESK--RYRVSGITSQPTKKL  123 (124)
Q Consensus        97 g~kv~~~h~~~~--~y~i~gls~~pa~~~  123 (124)
                      |++|+++|++..  .|+|.||+..++.++
T Consensus        34 gl~v~~~~~~~~~r~~~i~~l~~~~~~~~   62 (114)
T cd02846          34 GLKVEVTHRGNTNRKYKIKGLSAEPASQQ   62 (114)
T ss_pred             CCEEEEEcCCCCCceEEEeeccCCCccce
Confidence            999999998532  799999999887544

Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille. PAZ is found in two families of proteins that are essential components of RNA-mediated gene-silencing pathways, including RNA interference, the Piwi and Dicer families. PAZ functions as a nucleic acid binding domain, with a strong preference for single-stranded nucleic acids (RNA or DNA) or RNA duplexes with single-stranded 3' overhangs. It has been suggested that the PAZ domain provides a unique mode for the recognition of the two 3'-terminal nucleotides in single-stranded nucleic acids and buries the 3' OH group, and that it might recognize characteristic 3' overhangs in siRNAs within RISC (RNA-induced silencing) and other complexes.

>PF02170 PAZ: PAZ domain; InterPro: IPR003100 This domain is named after the proteins Piwi Argonaut and Zwille

Probab=84.49  E-value=0.47  Score=32.96  Aligned_cols=27  Identities=30%  Similarity=0.607  Sum_probs=23.2

Q ss_pred             ecEEEEeeCCCc-eeEEecCCCcccccC
Q 046499           97 GVKVEVAHGESK-RYRVSGITSQPTKKL  123 (124)
Q Consensus        97 g~kv~~~h~~~~-~y~i~gls~~pa~~~  123 (124)
                      |++|.++|++.. .|+|.+++..++.+.
T Consensus        31 g~~V~~~~~~~~r~~~I~~i~~~~~~~~   58 (135)
T PF02170_consen   31 GLKVTTTYNNNKRTYKIKGISFDPAPES   58 (135)
T ss_dssp             TEEEEETTTTCCEEEEEEEEEEEETTTS
T ss_pred             CcEEEEecCCCceEEEEeEEECCCCcce
Confidence            899999999865 899999998877653

It is also found in the CAF protein from Arabidopsis thaliana. The function of the domain is unknown but has been found in the middle region of a number of members of the Argonaute protein family, which also contain the Piwi domain (IPR003165 from INTERPRO) in their C-terminal region []. Several members of this family have been implicated in the development and maintenance of stem cells through the RNA-mediated gene-quelling mechanisms associated with the protein DICER. ; GO: 0005515 protein binding; PDB: 1R6Z_P 1T2R_A 1T2S_A 3MJ0_A 1VYN_A 3O3I_X 2L5C_A 3O6E_X 3O7V_X 2L5D_A ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	124
4f3t_A	861	Human Argonaute-2 - Mir-20a Complex Length = 861		2e-04
4ei1_A	859	Crystal Structure Of Human Argonaute2 Length = 859		2e-04

>pdb|4F3T|A Chain A, Human Argonaute-2 - Mir-20a Complex Length = 861

Iteration: 1
 Score = 40.4 bits (93), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/142 (27%), Positives = 53/142 (37%), Gaps = 48/142 (33%)
Query: 5   LEKHGKTH-FNGCLPAYDGRKGFYTAGALPFTSKDFNIKLIDRDESGD---------INC 54
           + +H KT  F    P +DGRK  YTA  LP       +++    E  D         ++C
Sbjct: 80  MVQHFKTQIFGDRKPVFDGRKNLYTAMPLPIGRDKVELEVTLPGEGKDRIFKVSIKWVSC 139
Query: 55  -------------------------------------TVVGRSFF-APGFHKSEIGFGVE 76
                                                T VGRSFF A     + +G G E
Sbjct: 140 VSLQALHDALSGRLPSVPFETIQALDVVMRHLPSMRYTPVGRSFFTASEGCSNPLGGGRE 199
Query: 77  CWKGFYQSLRPTQMGMSLNMGV 98
            W GF+QS+RP+   M LN+ V
Sbjct: 200 VWFGFHQSVRPSLWKMMLNIDV 221

>pdb|4EI1|A Chain A, Crystal Structure Of Human Argonaute2 Length = 859

Iteration: 1
 Score = 40.4 bits (93), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/142 (27%), Positives = 53/142 (37%), Gaps = 48/142 (33%)
Query: 5   LEKHGKTH-FNGCLPAYDGRKGFYTAGALPFTSKDFNIKLIDRDESGD---------INC 54
           + +H KT  F    P +DGRK  YTA  LP       +++    E  D         ++C
Sbjct: 78  MVQHFKTQIFGDRKPVFDGRKNLYTAMPLPIGRDKVELEVTLPGEGKDRIFKVSIKWVSC 137
Query: 55  -------------------------------------TVVGRSFF-APGFHKSEIGFGVE 76
                                                T VGRSFF A     + +G G E
Sbjct: 138 VSLQALHDALSGRLPSVPFETIQALDVVMRHLPSMRYTPVGRSFFTASEGCSNPLGGGRE 197
Query: 77  CWKGFYQSLRPTQMGMSLNMGV 98
            W GF+QS+RP+   M LN+ V
Sbjct: 198 VWFGFHQSVRPSLWKMMLNIDV 219

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	124
4f3t_A	861	Protein argonaute-2; hydrolase/gene regulation, RN	3e-14
4f1n_A	1046	Kpago; argonaute, RNAI, RNAse H, RNA binding prote	3e-07
3ho1_A	685	Argonaute; argonaute, protein-DNA-RNA complex, nuc	2e-04

>4f3t_A Protein argonaute-2; hydrolase/gene regulation, RNAI, slicer, hydrolase-RNA; 2.25A {Homo sapiens} PDB: 4ei1_A 4ei3_A* 1r4k_A 1si2_A 1si3_A Length = 861

 Score = 66.7 bits (162), Expect = 3e-14
 Identities = 34/146 (23%), Positives = 50/146 (34%), Gaps = 47/146 (32%)

Query: 1   MKQLLEKHGKTHFNGCLPAYDGRKGFYTAGALPFTSKDFNIKLIDRDESGD--------- 51
           ++ +++      F    P +DGRK  YTA  LP       +++    E  D         
Sbjct: 77  VEHMVQHFKTQIFGDRKPVFDGRKNLYTAMPLPIGRDKVELEVTLPGEGKDRIFKVSIKW 136

Query: 52  -------------------------------------INCTVVGRSFFAPGF-HKSEIGF 73
                                                +  T VGRSFF       + +G 
Sbjct: 137 VSCVSLQALHDALSGRLPSVPFETIQALDVVMRHLPSMRYTPVGRSFFTASEGCSNPLGG 196

Query: 74  GVECWKGFYQSLRPTQMGMSLNMGVK 99
           G E W GF+QS+RP+   M LN+ V 
Sbjct: 197 GREVWFGFHQSVRPSLWKMMLNIDVS 222

>4f1n_A Kpago; argonaute, RNAI, RNAse H, RNA binding protein-RNA complex; 3.19A {Vanderwaltozyma polyspora} Length = 1046

 Score = 46.6 bits (109), Expect = 3e-07
 Identities = 9/40 (22%), Positives = 12/40 (30%)

Query: 61  FFAPGFHKSEIGFGVECWKGFYQSLRPTQMGMSLNMGVKV 100
            F           G    +GF  SL     G++LN     
Sbjct: 245 IFNNFAKAIPFQIGGYLLQGFTVSLTHVYGGVALNTVSVP 284

>3ho1_A Argonaute; argonaute, protein-DNA-RNA complex, nucleic acid binding Pro RNA complex; 2.60A {Thermus thermophilus} PDB: 3dlb_A* 3dlh_A* 3f73_A* 3hm9_A 3hvr_A 3hxm_A* 3hk2_A 3hjf_A Length = 685

 Score = 38.4 bits (89), Expect = 2e-04
 Identities = 12/93 (12%), Positives = 25/93 (26%), Gaps = 28/93 (30%)

Query: 57  VGRSFFAPGFHKSEIGFGVECWKGFYQSLRPTQMGMSLNMGVKVEVAH------------ 104
           V     A    +   G G     G    L  +  G  L   ++V+ A+            
Sbjct: 127 VWVEGLAVYRREHARGPGWRVLGGAVLDLWVSDSGAFL---LEVDPAYRILCEMSLEAWL 183

Query: 105 -------------GESKRYRVSGITSQPTKKLK 124
                         + + + +  +  +  K+L 
Sbjct: 184 AQGHPLPKRVRNAYDRRTWELLRLGEEDPKELP 216

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	124
4f3t_A	861	Protein argonaute-2; hydrolase/gene regulation, RN	99.91
4f1n_A	1046	Kpago; argonaute, RNAI, RNAse H, RNA binding prote	99.8
1u04_A	771	Argonaute, hypothetical protein PF0537; RNAI, sile	97.3
1yvu_A	706	Hypothetical protein AQ_1447; RNAse H fold, RNA bi	96.67
3mj0_A	124	Protein argonaute-2; argonaut, PAZ domain, 3'-END	94.81
1vyn_A	143	Argonaute2; nucleic acid binding, RNA interference	94.73
1r6z_P	509	Chimera of maltose-binding periplasmic protein AN	88.46
2xfm_A	150	MIWI, PIWI-like protein 1; RNA-protein complex, di	84.66

>4f3t_A Protein argonaute-2; hydrolase/gene regulation, RNAI, slicer, hydrolase-RNA; 2.25A {Homo sapiens} PDB: 4ei1_A 4ei3_A* 1r4k_A 1si2_A 1si3_A

Probab=99.91  E-value=5.3e-25  Score=192.80  Aligned_cols=122  Identities=34%  Similarity=0.626  Sum_probs=94.7

Q ss_pred             hHHHHhhccCCCCCCCceEeCCCceeecCCCCCCCc--eEEEEecCCCCC------------------------------
Q 046499            2 KQLLEKHGKTHFNGCLPAYDGRKGFYTAGALPFTSK--DFNIKLIDRDES------------------------------   49 (124)
Q Consensus         2 ~~l~~~~~~~~f~~~~~ayDG~k~lyt~~~L~~~~~--~f~V~l~~~~~~------------------------------   49 (124)
                      ++|+++++...|++..+||||+++|||+++||+++.  ++.|+++.++++                              
T Consensus        78 ~~l~~~~~~~~~~~~~~afDG~~~l~s~~~L~~~~~~~~~~v~~~~~~~~~~~~V~I~~~~~i~l~~L~~~l~g~~~~~~  157 (861)
T 4f3t_A           78 EHMVQHFKTQIFGDRKPVFDGRKNLYTAMPLPIGRDKVELEVTLPGEGKDRIFKVSIKWVSCVSLQALHDALSGRLPSVP  157 (861)
T ss_dssp             HHHHHHSCCCCCTTCCCEECSSSEEEESSCCSCSSCEEEEECCC-------CEEEEEEEEEEEEHHHHHHHHHTCSSSCC
T ss_pred             HHHHHHhhhhhhcCceEEEcCcceEEECCcCCCCCcceEEEEecCCCCCCcEEEEEEEEeeecCHHHHHHHhcCCCCCCc
Confidence            456677776789988899999999999999997543  233333321110                              


Q ss_pred             --------------CccceeeecccccCCCCC-CccCCCcEEEEeeeeeeeeccCCceEEEe------------------
Q 046499           50 --------------GDINCTVVGRSFFAPGFH-KSEIGFGVECWKGFYQSLRPTQMGMSLNM------------------   96 (124)
Q Consensus        50 --------------~s~~~~~vgrsff~~~~~-~~~Lg~G~e~w~Gf~qSvR~~~~~l~LNv------------------   96 (124)
                                    |+.++..+|||||+++.+ ..+||+|+|+|+||||||||++++|+|||                  
T Consensus       158 ~~~iq~Lniilr~~~~~~~~~vGR~Ff~~~~~~~~~lg~Gle~w~G~~~Svr~~~~~l~LnvDvs~~~F~~~~~v~d~~~  237 (861)
T 4f3t_A          158 FETIQALDVVMRHLPSMRYTPVGRSFFTASEGCSNPLGGGREVWFGFHQSVRPSLWKMMLNIDVSATAFYKAQPVIEFVC  237 (861)
T ss_dssp             HHHHHHHHHHHHHHHHHHSEEETTEEECCC---CCEEETTEEEEEEEEEEEEECSSSEEEEEEEEEEEEECCEEHHHHHH
T ss_pred             HHHHHHHHHHHHhhccccccccCCCccCCCCCceeccCCCEEEEeceeEEEEecCCccEEeecccceeEeeCCcHHHHHH
Confidence                          566789999999987654 56899999999999999999999999999                  


Q ss_pred             ----------------------------ecEEEEeeCCCc--eeEEecCCCcccccC
Q 046499           97 ----------------------------GVKVEVAHGESK--RYRVSGITSQPTKKL  123 (124)
Q Consensus        97 ----------------------------g~kv~~~h~~~~--~y~i~gls~~pa~~~  123 (124)
                                                  |++|+++|++..  +|+|.+|+..||+++
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~k~LkGl~V~~t~~~~~~r~yrI~~i~~~pa~~~  294 (861)
T 4f3t_A          238 EVLDFKSIEEQQKPLTDSQRVKFTKEIKGLKVEITHCGQMKRKYRVCNVTRRPASHQ  294 (861)
T ss_dssp             HHHTCSSCC---CCCCHHHHHHHHHHHTTCEEEESCC---CCEEEEEEEEEEETTTC
T ss_pred             HHhcccchhhhccccCHHHHHHHHHHhCCcEEEEeecCCCCceEEEeeCCCCCCCCc
Confidence                                        889999997643  799999999898864

>4f1n_A Kpago; argonaute, RNAI, RNAse H, RNA binding protein-RNA complex; 3.19A {Vanderwaltozyma polyspora}

Probab=99.80  E-value=3.1e-20  Score=164.95  Aligned_cols=42  Identities=26%  Similarity=0.238  Sum_probs=35.1

Q ss_pred             eeeccc-ccCCCCC--CccCCCcEEEEeeeeeeeeccCCceEEEe
Q 046499           55 TVVGRS-FFAPGFH--KSEIGFGVECWKGFYQSLRPTQMGMSLNM   96 (124)
Q Consensus        55 ~~vgrs-ff~~~~~--~~~Lg~G~e~w~Gf~qSvR~~~~~l~LNv   96 (124)
                      ..+|++ ||..+..  ..+||+|+|+|+||||||||+++||+|||
T Consensus       236 ~~vg~nkFF~~~~~~~~~~Lg~Gle~wrGffqSvRpa~~rLlLNv  280 (1046)
T 4f1n_A          236 FQVQGNKFFIFNNFAKAIPFQIGGYLLQGFTVSLTHVYGGVALNT  280 (1046)
T ss_dssp             EEETTTEEEECSTTCCEEECSSSEEEEEEEEEEEEEETTEEEEEE
T ss_pred             EEcCCcccccCCCCCccccCCCcEEEEEeEeeeEEecCCceEEEE
Confidence            455555 8865432  67899999999999999999999999998

>1u04_A Argonaute, hypothetical protein PF0537; RNAI, silencing, PIWI, PAZ, RISC, slicer, RNAse H hydrolase-gene regulation complex; 2.25A {Pyrococcus furiosus} SCOP: b.34.14.1 c.55.3.10 PDB: 1z25_A 1z26_A

Probab=97.30  E-value=0.00018  Score=62.67  Aligned_cols=86  Identities=12%  Similarity=-0.000  Sum_probs=64.5

Q ss_pred             HHHhhccCCCCCCCceEeCCCc--eeecCCCCCCCceEEEEecCCCCC-------------Cccc-----eeeecccccC
Q 046499            4 LLEKHGKTHFNGCLPAYDGRKG--FYTAGALPFTSKDFNIKLIDRDES-------------GDIN-----CTVVGRSFFA   63 (124)
Q Consensus         4 l~~~~~~~~f~~~~~ayDG~k~--lyt~~~L~~~~~~f~V~l~~~~~~-------------~s~~-----~~~vgrsff~   63 (124)
                      ++.+|+ ..+|  -.+||| .+  ||++++|+-++..+.|++...++-             -+.+     ...+||+||.
T Consensus        41 ~~~~~~-~~~g--~~~fdg-~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~n~i~r~~l~~~~~~~~~l~~~~r~~~~  116 (771)
T 1u04_A           41 SIYRLA-YENV--GIVIDP-ENLIIATTKELEYEGEFIPEGEISFSELRNDYQSKLVLRLLKENGIGEYELSKLLRKFRK  116 (771)
T ss_dssp             CHHHHH-HHTT--EEEEET-TTTEEEESSCCCCSSCCEEEEEECGGGSCHHHHHHHHHHHHHHTTCSHHHHHHHHTTTSC
T ss_pred             HHHHHH-hhcC--cEEecC-cceeeeccceeccCCCeEEEEEEEcceecHHHHHHHHHHHHHHcccchHHHHHHhhhcCC
Confidence            455665 5576  459999 66  999999997777788877654421             2333     6688999996


Q ss_pred             CCCCCccCCCcEEEEeeeeeeeeccCCceEEEeec
Q 046499           64 PGFHKSEIGFGVECWKGFYQSLRPTQMGMSLNMGV   98 (124)
Q Consensus        64 ~~~~~~~Lg~G~e~w~Gf~qSvR~~~~~l~LNvg~   98 (124)
                      +    +++ +-+++|.||-.|||..+++++|++-+
T Consensus       117 ~----~~~-~~~~~~~~~~tsi~~~e~~~ll~~di  146 (771)
T 1u04_A          117 P----KTF-GDYKVIPSVEMSVIKHDEDFYLVIHI  146 (771)
T ss_dssp             C----EEE-TTEEEEEEEEEEEEECSSCEEEEEEE
T ss_pred             C----ccc-cccEEEECceeeEEecCCceEEEEEe
Confidence            5    345 46999999999999999999998733

>1yvu_A Hypothetical protein AQ_1447; RNAse H fold, RNA binding protein, gene regulation; 2.90A {Aquifex aeolicus} SCOP: b.34.14.1 c.55.3.10 PDB: 2f8s_A 2f8t_A 2nub_A

Probab=96.67  E-value=0.00053  Score=59.20  Aligned_cols=79  Identities=11%  Similarity=0.172  Sum_probs=56.2

Q ss_pred             CceEeCCCceeecCCCCCC--------CceEEEEecCCCC----C---------------CccceeeecccccCCCCCCc
Q 046499           17 LPAYDGRKGFYTAGALPFT--------SKDFNIKLIDRDE----S---------------GDINCTVVGRSFFAPGFHKS   69 (124)
Q Consensus        17 ~~ayDG~k~lyt~~~L~~~--------~~~f~V~l~~~~~----~---------------~s~~~~~vgrsff~~~~~~~   69 (124)
                      .+.|--....|++++..-+        +..+.+++..+-.    +               -...+..+||+||.+.. +.
T Consensus        48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~igr~~~~~~~-~~  126 (706)
T 1yvu_A           48 LPTFRREDEFWCAGKVEKDTLYLTLSNGEIVELKRVGEEEFRGFQNERECQELFRDFLTKTKVKDKFISDFYKKFRD-KI  126 (706)
T ss_dssp             SCEEEETTEEEESSCCTTCCCEEEECSSSCEEEEECCCEECCCCSCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-HH
T ss_pred             CccccccccceeccccccceEEEEcCCCCEEEEEEEEEeeccCCCCCHHHHHHHHHHHHHcCChHhhhCccccCccc-cc
Confidence            5677777888999998643        3345565544322    1               11233479999997643 55


Q ss_pred             cC---CCcEEEEeeeeeeeeccC-CceEEEe
Q 046499           70 EI---GFGVECWKGFYQSLRPTQ-MGMSLNM   96 (124)
Q Consensus        70 ~L---g~G~e~w~Gf~qSvR~~~-~~l~LNv   96 (124)
                      ++   ..++|+|.||-.||+..+ ++++||+
T Consensus       127 ~i~~~~~~l~iwPG~~tsi~~~e~~~~~L~~  157 (706)
T 1yvu_A          127 TVQGKNRKIALIPEVNEKVLKSEEGYFLLHL  157 (706)
T ss_dssp             EEECSSCEEEEEEEEEEEEEEBSSSCEEEEE
T ss_pred             cccCCCCcEEEccCeEEEEEeccCCCeEEEE
Confidence            66   467999999999999988 9999998

>3mj0_A Protein argonaute-2; argonaut, PAZ domain, 3'-END 2'-O-methylated ssRNA, RNA-RNA protein complex; HET: OMU; 2.31A {Drosophila melanogaster} SCOP: b.34.14.1 PDB: 1t2r_A 1t2s_A

Probab=94.81  E-value=0.0058  Score=41.81  Aligned_cols=28  Identities=29%  Similarity=0.514  Sum_probs=23.3

Q ss_pred             ecEEEEeeCC---C-c-eeEEecCCCcccccCC
Q 046499           97 GVKVEVAHGE---S-K-RYRVSGITSQPTKKLK  124 (124)
Q Consensus        97 g~kv~~~h~~---~-~-~y~i~gls~~pa~~~~  124 (124)
                      |++|+++|++   . . .|+|.||+..||++++
T Consensus        37 Gl~V~~~~~~~~~~~~r~yrI~~l~~~~a~~~~   69 (124)
T 3mj0_A           37 GINVVYTPPQSFQSAPRVYRVNGLSRAPASSET   69 (124)
T ss_dssp             TCEEEECCCGGGTCCCEEEECCEEEEEETTTCE
T ss_pred             CeEEEEecccccccCCceEEEEeccCCCccccE
Confidence            9999999963   2 2 7999999999998763

>1r6z_P Chimera of maltose-binding periplasmic protein AN argonaute 2; deviant OB fold, RNAI, gene regulation; HET: MAL; 2.80A {Escherichia coli} SCOP: b.34.14.1 c.94.1.1

Probab=88.46  E-value=0.087  Score=42.58  Aligned_cols=27  Identities=30%  Similarity=0.532  Sum_probs=23.5

Q ss_pred             ecEEEEeeCCC----c-eeEEecCCCcccccC
Q 046499           97 GVKVEVAHGES----K-RYRVSGITSQPTKKL  123 (124)
Q Consensus        97 g~kv~~~h~~~----~-~y~i~gls~~pa~~~  123 (124)
                      ||+|+++|++.    . +|||.||+..+|+++
T Consensus       419 ~l~v~~~~~~~~~~~~~~~~i~~~~~~~~~~~  450 (509)
T 1r6z_P          419 GINVVYTPPQSFQSAPRVYRVNGLSRAPASSE  450 (509)
T ss_dssp             TCEEEECCCGGGCCCCEEEECCEEEEEETTTC
T ss_pred             CcEEEEecCCCccCCCCeEEEeeCCCCChhhc
Confidence            99999999764    3 699999999999875

>2xfm_A MIWI, PIWI-like protein 1; RNA-protein complex, differentiation, RNA interference; HET: OMU; NMR {Mus musculus}

Probab=84.66  E-value=0.26  Score=34.29  Aligned_cols=26  Identities=27%  Similarity=0.314  Sum_probs=21.7

Q ss_pred             ecEEEEeeCCCceeEEecCCCcccccC
Q 046499           97 GVKVEVAHGESKRYRVSGITSQPTKKL  123 (124)
Q Consensus        97 g~kv~~~h~~~~~y~i~gls~~pa~~~  123 (124)
                      |++|.++|.+. .|+|.+|+..++.+.
T Consensus        31 g~~V~t~y~nr-~yrI~~i~~~~~p~~   56 (150)
T 2xfm_A           31 GLIVLTKYNNK-TYRVDDIDWDQNPKS   56 (150)
T ss_dssp             TCEEEETTTTE-EEECCEEETTCCTTC
T ss_pred             CcEEEEeeCCc-eEEeeecCCCCCccC
Confidence            89999999653 899999998887654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	124
d1t2sa_	123	b.34.14.1 (A:) Argonaute 2 {Fruit fly (Drosophila	3e-04

>d1t2sa_ b.34.14.1 (A:) Argonaute 2 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 123

class: All beta proteins
fold: SH3-like barrel
superfamily: PAZ domain
family: PAZ domain
domain: Argonaute 2
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 36.0 bits (83), Expect = 3e-04
 Identities = 8/33 (24%), Positives = 14/33 (42%), Gaps = 5/33 (15%)

Query: 97  GVKVEVAHGES-----KRYRVSGITSQPTKKLK 124
           G+ V     +S     + YRV+G++  P     
Sbjct: 39  GINVVYTPPQSFQSAPRVYRVNGLSRAPASSET 71

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	124
d1u04a1	322	Argonaute homologue PF0537 {Pyrococcus furiosus [T	98.51
d1t2sa_	123	Argonaute 2 {Fruit fly (Drosophila melanogaster) [	97.26
d1si2a_	126	Eukaryotic translation initiation factor 2C 1, EIF	95.99

>d1u04a1 b.34.14.1 (A:2-323) Argonaute homologue PF0537 {Pyrococcus furiosus [TaxId: 2261]}

class: All beta proteins
fold: SH3-like barrel
superfamily: PAZ domain
family: PAZ domain
domain: Argonaute homologue PF0537
species: Pyrococcus furiosus [TaxId: 2261]

Probab=98.51  E-value=1.6e-08  Score=78.24  Aligned_cols=84  Identities=12%  Similarity=0.052  Sum_probs=59.8

Q ss_pred             HHHhhccCCCCCCCceEeCCCceeecCCCCCCCceEEE--EecCCCCC-----------------CccceeeecccccCC
Q 046499            4 LLEKHGKTHFNGCLPAYDGRKGFYTAGALPFTSKDFNI--KLIDRDES-----------------GDINCTVVGRSFFAP   64 (124)
Q Consensus         4 l~~~~~~~~f~~~~~ayDG~k~lyt~~~L~~~~~~f~V--~l~~~~~~-----------------~s~~~~~vgrsff~~   64 (124)
                      ++.+|+ ... |...+||| ..||++++||.+ .++.+  .+..+..+                 ...++..+||+||.|
T Consensus        40 ll~~h~-~~~-G~~~~fDg-~~l~~~kkL~~~-~e~~~~~~~~~~~~~~~~~~~q~~Nil~r~~m~~l~l~~iGRnyydp  115 (322)
T d1u04a1          40 IYRLAY-ENV-GIVIDPEN-LIIATTKELEYE-GEFIPEGEISFSELRNDYQSKLVLRLLKENGIGEYELSKLLRKFRKP  115 (322)
T ss_dssp             HHHHHH-HTT-EEEEETTT-TEEEESSCCCCS-SCCEEEEEECGGGSCHHHHHHHHHHHHHHTTCSHHHHHHHHTTTSCC
T ss_pred             HHHHHH-Hhc-CeEEecCC-cEEecccccCcc-eeEEEEEEEEcccCCCcHHHHHHHHHHHHHHhhhcceeeeccccCCC
Confidence            455664 334 45568899 789999999864 34443  33332221                 345677899999976


Q ss_pred             CCCCccCCCcEEEEeeeeeeeeccCCceEEEe
Q 046499           65 GFHKSEIGFGVECWKGFYQSLRPTQMGMSLNM   96 (124)
Q Consensus        65 ~~~~~~Lg~G~e~w~Gf~qSvR~~~~~l~LNv   96 (124)
                      .. .    ..+|+|+||-.|||..+++++||+
T Consensus       116 ~~-~----~~levwPGy~TSI~q~E~~ilLc~  142 (322)
T d1u04a1         116 KT-F----GDYKVIPSVEMSVIKHDEDFYLVI  142 (322)
T ss_dssp             EE-E----TTEEEEEEEEEEEEECSSCEEEEE
T ss_pred             CC-c----cceEEcCCeeeeehhhcCceEEEE
Confidence            42 2    468999999999999999999987

>d1t2sa_ b.34.14.1 (A:) Argonaute 2 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: SH3-like barrel
superfamily: PAZ domain
family: PAZ domain
domain: Argonaute 2
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.26  E-value=3.3e-05  Score=51.73  Aligned_cols=28  Identities=29%  Similarity=0.482  Sum_probs=24.5

Q ss_pred             ecEEEEeeCCCc-----eeEEecCCCcccccCC
Q 046499           97 GVKVEVAHGESK-----RYRVSGITSQPTKKLK  124 (124)
Q Consensus        97 g~kv~~~h~~~~-----~y~i~gls~~pa~~~~  124 (124)
                      ||||++||+++.     +|+|+|||++||++++
T Consensus        39 GlkV~~th~~~~~~~~R~~~I~glt~~~a~~~~   71 (123)
T d1t2sa_          39 GINVVYTPPQSFQSAPRVYRVNGLSRAPASSET   71 (123)
T ss_dssp             TEEEEECCCTTTCCCCEEEEECEEEEEETTTCE
T ss_pred             CCEEEEecCCCCCCCCceEEEccCCCCchhcce
Confidence            999999998752     7999999999999863

>d1si2a_ b.34.14.1 (A:) Eukaryotic translation initiation factor 2C 1, EIF2C1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: PAZ domain
family: PAZ domain
domain: Eukaryotic translation initiation factor 2C 1, EIF2C1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.99  E-value=0.0009  Score=44.25  Aligned_cols=27  Identities=41%  Similarity=0.715  Sum_probs=24.0

Q ss_pred             ecEEEEeeCCCc--eeEEecCCCcccccC
Q 046499           97 GVKVEVAHGESK--RYRVSGITSQPTKKL  123 (124)
Q Consensus        97 g~kv~~~h~~~~--~y~i~gls~~pa~~~  123 (124)
                      |++|+++|+++.  .|+|.||+..||+++
T Consensus        39 gl~V~~~h~~~~~r~y~I~gl~~~~~~~~   67 (126)
T d1si2a_          39 GLKVEVTHCGQMKRKYRVCNVTRRPASHQ   67 (126)
T ss_dssp             TCEEEECTTTTCCCEEEEEEEEEEETTTC
T ss_pred             CeEEEEecCCCCcceEEEeeccCCCCCCc
Confidence            999999998764  799999999999875