Citrus Sinensis ID: 046511

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280--
MAESEPGTPAVSTPATPGTPGGALMSAARVDSLSYERQAKSGFKCLPVTAPSSWGHTNSCSFPDIPVPNVSLTRKVGAEFVGTFILIFAATAGPIVNQKYSGAETLIGNAASHLNPSLTIAFAALRHFPWVQVPAYIMAQVSASICASFALKAVFHPFMSGGVTVPSVNTGQAFALEFLITFNLLFVVTAVATDTRAVGELAGIAVGATVMLNILIAGPSSGGSMNPVRTLGPAVAAGNYEKLWIFLLAPTLGALAGATTYTVVKLRDNETDPPREARSFRR
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccEEccccccccccHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHEEEEccccccccccHHHHHHHHHHHHHHHccccccccccccHHHHHHHHcccccEEEEEHHHHHHHHHHHHHHHHHcccccccccccccccccc
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccEEEEEEEEEEEEEEEHHHcccccccccccccHHHHHHHHHHHHHHccccccccccHccccHHHEEccccccEEEEHHHHHHHHHHHHHHHHHcccccccccccccccccc
maesepgtpavstpatpgtpggalmsaarvDSLSYERQaksgfkclpvtapsswghtnscsfpdipvpnvsltrkvgaEFVGTFILIFAAtagpivnqkysgAETLIGnaashlnpSLTIAFAALrhfpwvqvpAYIMAQVSASICASFALKAvfhpfmsggvtvpsvntGQAFALEFLITFNLLFVVTAVATDTRAVGELAGIAVGATVMLNILIagpssggsmnpvrtlgpavaagnYEKLWIFLLAptlgalagatTYTVVKlrdnetdpprearsfrr
maesepgtpavstpatpgtpggALMSAARVDSLSYERQAKSGFKCLPVTAPSSWGHTNSCSFPDIPVPNVSLTRKVGAEFVGTFILIFAATAGPIVNQKYSGAETLIGNAASHLNPSLTIAFAALRHFPWVQVPAYIMAQVSASICASFALKAVFHPFMSGGVTVPSVNTGQAFALEFLITFNLLFVVTAVATDTRAVGELAGIAVGATVMLNILIAGPSSGGSMNPVRTLGPAVAAGNYEKLWIFLLAPTLGALAGATTYTVvklrdnetdpprearsfrr
MAESEPGTPAVSTPATPGTPGGALMSAARVDSLSYERQAKSGFKCLPVTAPSSWGHTNSCSFPDIPVPNVSLTRKVGAEFVGTFILIFAATAGPIVNQKYSGAETLIGNAASHLNPSLTIAFAALRHFPWVQVPAYIMAQVSASICASFALKAVFHPFMSGGVTVPSVNTGQAFALEFLITFNLLFvvtavatdtravGELAGIAVGATVMLNILIAGPSSGGSMNPVRTLGPAVAAGNYEKLWIFllaptlgalagattytVVKLRDNETDPPREARSFRR
*****************************************GFKCLPVTAPSSWGHTNSCSFPDIPVPNVSLTRKVGAEFVGTFILIFAATAGPIVNQKYSGAETLIGNAASHLNPSLTIAFAALRHFPWVQVPAYIMAQVSASICASFALKAVFHPFMSGGVTVPSVNTGQAFALEFLITFNLLFVVTAVATDTRAVGELAGIAVGATVMLNILI**************LGPAVAAGNYEKLWIFLLAPTLGALAGATTYTVVKL****************
*******************************************************************PNVSLTRKVGAEFVGTFILIFAATAGPIVNQKYSGAETLIGNAASHLNPSLTIAFAALRHFPWVQVPAYIMAQVSASICASFALKAVFHPFMSGGVTVPSVNTGQAFALEFLITFNLLFVVTAVATDTRAVGELAGIAVGATVMLNILIAGPSSGGSMNPVRTLGPAVAAGNYEKLWIFLLAPTLGALAGATTYTVVK*****************
****************PGTPGGALMSAARVDSLSYERQAKSGFKCLPVTAPSSWGHTNSCSFPDIPVPNVSLTRKVGAEFVGTFILIFAATAGPIVNQKYSGAETLIGNAASHLNPSLTIAFAALRHFPWVQVPAYIMAQVSASICASFALKAVFHPFMSGGVTVPSVNTGQAFALEFLITFNLLFVVTAVATDTRAVGELAGIAVGATVMLNILIAGPSSGGSMNPVRTLGPAVAAGNYEKLWIFLLAPTLGALAGATTYTVVKLRD**************
********************************************C************NSCSFPDIPVPNVSLTRKVGAEFVGTFILIFAATAGPIVNQKYSGAETLIGNAASHLNPSLTIAFAALRHFPWVQVPAYIMAQVSASICASFALKAVFHPFMSGGVTVPSVNTGQAFALEFLITFNLLFVVTAVATDTRAVGELAGIAVGATVMLNILIAGPSSGGSMNPVRTLGPAVAAGNYEKLWIFLLAPTLGALAGATTYTVVKLRDN*************
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MAESEPGTPAVSTPATPGTPGGALMSAARVDSLSYERQAKSGFKCLPVTAPSSWGHTNSCSFPDIPVPNVSLTRKVGAEFVGTFILIFAATAGPIVNQKYSGAETLIGNAASHLNPSLTIAFAALRHFPWVQVPAYIMAQVSASICASFALKAVFHPFMSGGVTVPSVNTGQAFALEFLITFNLLFVVTAVATDTRAVGELAGIAVGATVMLNILIAGPSSGGSMNPVRTLGPAVAAGNYEKLWIFLLAPTLGALAGATTYTVVKLRDNETDPPREARSFRR
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query282 2.2.26 [Sep-21-2011]
Q9SV84304 Probable aquaporin NIP5-1 yes no 0.911 0.845 0.726 1e-109
Q9ATN1302 Aquaporin NIP3-1 OS=Zea m N/A no 0.985 0.920 0.664 1e-103
Q0IWF3311 Aquaporin NIP3-1 OS=Oryza yes no 0.957 0.868 0.670 1e-102
Q9SAI4305 Aquaporin NIP6-1 OS=Arabi no no 0.971 0.898 0.600 3e-86
Q7EYH7305 Aquaporin NIP3-2 OS=Oryza no no 0.719 0.665 0.484 1e-50
Q84S07278 Aquaporin NIP3-3 OS=Oryza no no 0.702 0.712 0.476 6e-50
P08995271 Nodulin-26 OS=Glycine max no no 0.751 0.782 0.455 7e-49
Q19KC1295 Aquaporin NIP2-1 OS=Zea m N/A no 0.776 0.742 0.439 1e-48
Q6Z2T3298 Aquaporin NIP2-1 OS=Oryza no no 0.723 0.684 0.442 9e-48
Q67WJ8298 Aquaporin NIP2-2 OS=Oryza no no 0.723 0.684 0.437 3e-46
>sp|Q9SV84|NIP51_ARATH Probable aquaporin NIP5-1 OS=Arabidopsis thaliana GN=NIP5-1 PE=2 SV=1 Back     alignment and function desciption
 Score =  393 bits (1009), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 202/278 (72%), Positives = 226/278 (81%), Gaps = 21/278 (7%)

Query: 24  LMSAARVDSLSYE-RQAKSGFKCLPVTAPSSWGHTNSCSFPDIPVPNVSLTRKVGAEFVG 82
           L++  RVDS+S++ R+     KCLPV   S+WG  ++C F D P P+VSLTRK+GAEFVG
Sbjct: 29  LITGMRVDSMSFDHRKPTPRCKCLPVMG-STWGQHDTC-FTDFPSPDVSLTRKLGAEFVG 86

Query: 83  TFILIFAATAGPIVNQKYSGAETLIGNAA------------------SHLNPSLTIAFAA 124
           TFILIF ATAGPIVNQKY GAETLIGNAA                  +HLNPSLTIAFAA
Sbjct: 87  TFILIFTATAGPIVNQKYDGAETLIGNAACAGLAVMIIILSTGHISGAHLNPSLTIAFAA 146

Query: 125 LRHFPWVQVPAYIMAQVSASICASFALKAVFHPFMSGGVTVPSVNTGQAFALEFLITFNL 184
           LRHFPW  VPAYI AQVSASICASFALK VFHPFMSGGVT+PSV+ GQAFALEF+ITF L
Sbjct: 147 LRHFPWAHVPAYIAAQVSASICASFALKGVFHPFMSGGVTIPSVSLGQAFALEFIITFIL 206

Query: 185 LFVVTAVATDTRAVGELAGIAVGATVMLNILIAGPSSGGSMNPVRTLGPAVAAGNYEKLW 244
           LFVVTAVATDTRAVGELAGIAVGATVMLNIL+AGPS+GGSMNPVRTLGPAVA+GNY  LW
Sbjct: 207 LFVVTAVATDTRAVGELAGIAVGATVMLNILVAGPSTGGSMNPVRTLGPAVASGNYRSLW 266

Query: 245 IFLLAPTLGALAGATTYTVVKLRDNETDPPREARSFRR 282
           ++L+APTLGA++GA  YT VKL D+ TDPPR  RSFRR
Sbjct: 267 VYLVAPTLGAISGAAVYTGVKLNDSVTDPPRPVRSFRR 304
Boric acid transporter. Low water transport activity. Plays an important role as plasma membrane boric acid channel for the boron uptake required for plant growth and development under boron limitation.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9ATN1|NIP31_MAIZE Aquaporin NIP3-1 OS=Zea mays GN=NIP3-1 PE=2 SV=1 Back     alignment and function description
>sp|Q0IWF3|NIP31_ORYSJ Aquaporin NIP3-1 OS=Oryza sativa subsp. japonica GN=NIP3-1 PE=2 SV=2 Back     alignment and function description
>sp|Q9SAI4|NIP61_ARATH Aquaporin NIP6-1 OS=Arabidopsis thaliana GN=NIP6-1 PE=1 SV=1 Back     alignment and function description
>sp|Q7EYH7|NIP32_ORYSJ Aquaporin NIP3-2 OS=Oryza sativa subsp. japonica GN=NIP3-2 PE=2 SV=1 Back     alignment and function description
>sp|Q84S07|NIP33_ORYSJ Aquaporin NIP3-3 OS=Oryza sativa subsp. japonica GN=NIP3-3 PE=2 SV=1 Back     alignment and function description
>sp|P08995|NO26_SOYBN Nodulin-26 OS=Glycine max PE=1 SV=2 Back     alignment and function description
>sp|Q19KC1|NIP21_MAIZE Aquaporin NIP2-1 OS=Zea mays GN=NIP2-1 PE=2 SV=2 Back     alignment and function description
>sp|Q6Z2T3|NIP21_ORYSJ Aquaporin NIP2-1 OS=Oryza sativa subsp. japonica GN=NIP2-1 PE=1 SV=1 Back     alignment and function description
>sp|Q67WJ8|NIP22_ORYSJ Aquaporin NIP2-2 OS=Oryza sativa subsp. japonica GN=NIP2-2 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query282
394774964300 boron transporter [Citrus trifoliata] 1.0 0.94 0.926 1e-154
449456303298 PREDICTED: probable aquaporin NIP5-1-lik 0.992 0.939 0.763 1e-123
224056721299 aquaporin, MIP family, NIP subfamily [Po 0.992 0.936 0.770 1e-123
255555875298 Nodulin-26, putative [Ricinus communis] 0.992 0.939 0.766 1e-123
225426464298 PREDICTED: probable aquaporin NIP5-1 [Vi 0.992 0.939 0.766 1e-122
224117684300 aquaporin, MIP family, NIP subfamily [Po 0.982 0.923 0.761 1e-121
380702814296 nodulin 26-like intrinsic protein [Solan 0.978 0.932 0.735 1e-113
356534029299 PREDICTED: probable aquaporin NIP5-1-lik 0.982 0.926 0.697 1e-110
297813479304 hypothetical protein ARALYDRAFT_911337 [ 0.911 0.845 0.733 1e-108
15235034304 putative aquaporin NIP5-1 [Arabidopsis t 0.911 0.845 0.726 1e-107
>gi|394774964|gb|AFN37617.1| boron transporter [Citrus trifoliata] Back     alignment and taxonomy information
 Score =  548 bits (1413), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 278/300 (92%), Positives = 280/300 (93%), Gaps = 18/300 (6%)

Query: 1   MAESEPGTPAVSTPATPGTPGGALMSAARVDSLSYERQAKSGFKCLPVTAPSSWGHTNSC 60
           MAESEPGTPAVSTPATPGTPGG LMSAARVDSLSYERQAKSGFKCLPVTAPSSWGHTNSC
Sbjct: 1   MAESEPGTPAVSTPATPGTPGGPLMSAARVDSLSYERQAKSGFKCLPVTAPSSWGHTNSC 60

Query: 61  SFPDIPVPNVSLTRKVGAEFVGTFILIFAATAGPIVNQKYSGAETLIGNAA--------- 111
            FPDIPVPNVSLTRKVGAEFVGTFILIFAATAGPIVNQKYSGAETLIGNAA         
Sbjct: 61  GFPDIPVPNVSLTRKVGAEFVGTFILIFAATAGPIVNQKYSGAETLIGNAACAGLAVMII 120

Query: 112 ---------SHLNPSLTIAFAALRHFPWVQVPAYIMAQVSASICASFALKAVFHPFMSGG 162
                    +HLNPSLTIAFAALRHFPWVQVPAYIMAQVSASICASFALKAVFHPFMSGG
Sbjct: 121 ILSTGHISGAHLNPSLTIAFAALRHFPWVQVPAYIMAQVSASICASFALKAVFHPFMSGG 180

Query: 163 VTVPSVNTGQAFALEFLITFNLLFVVTAVATDTRAVGELAGIAVGATVMLNILIAGPSSG 222
           VTVPSVNTGQAFALEFLITFNLLFVVTAVATDTRAVGELAGIAVGATVMLNIL+AGPSSG
Sbjct: 181 VTVPSVNTGQAFALEFLITFNLLFVVTAVATDTRAVGELAGIAVGATVMLNILMAGPSSG 240

Query: 223 GSMNPVRTLGPAVAAGNYEKLWIFLLAPTLGALAGATTYTVVKLRDNETDPPREARSFRR 282
           GSMNPVRTLGPAVAAGNYEKLWIFLLAPTLGALAGATTYTVVKLRDNETDPPREARSFRR
Sbjct: 241 GSMNPVRTLGPAVAAGNYEKLWIFLLAPTLGALAGATTYTVVKLRDNETDPPREARSFRR 300

Source: Citrus trifoliata

Species: Citrus trifoliata

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|449456303|ref|XP_004145889.1| PREDICTED: probable aquaporin NIP5-1-like [Cucumis sativus] gi|449518699|ref|XP_004166374.1| PREDICTED: probable aquaporin NIP5-1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|224056721|ref|XP_002298990.1| aquaporin, MIP family, NIP subfamily [Populus trichocarpa] gi|222846248|gb|EEE83795.1| aquaporin, MIP family, NIP subfamily [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255555875|ref|XP_002518973.1| Nodulin-26, putative [Ricinus communis] gi|223541960|gb|EEF43506.1| Nodulin-26, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|225426464|ref|XP_002276319.1| PREDICTED: probable aquaporin NIP5-1 [Vitis vinifera] gi|297742499|emb|CBI34648.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224117684|ref|XP_002317642.1| aquaporin, MIP family, NIP subfamily [Populus trichocarpa] gi|222860707|gb|EEE98254.1| aquaporin, MIP family, NIP subfamily [Populus trichocarpa] Back     alignment and taxonomy information
>gi|380702814|gb|AFD96389.1| nodulin 26-like intrinsic protein [Solanum tuberosum] Back     alignment and taxonomy information
>gi|356534029|ref|XP_003535560.1| PREDICTED: probable aquaporin NIP5-1-like [Glycine max] Back     alignment and taxonomy information
>gi|297813479|ref|XP_002874623.1| hypothetical protein ARALYDRAFT_911337 [Arabidopsis lyrata subsp. lyrata] gi|297320460|gb|EFH50882.1| hypothetical protein ARALYDRAFT_911337 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|15235034|ref|NP_192776.1| putative aquaporin NIP5-1 [Arabidopsis thaliana] gi|32363434|sp|Q9SV84.1|NIP51_ARATH RecName: Full=Probable aquaporin NIP5-1; AltName: Full=NOD26-like intrinsic protein 5-1; Short=AtNIP5;1; AltName: Full=Nodulin-26-like major intrinsic protein 6; Short=NodLikeMip6; Short=Protein NLM6 gi|4538967|emb|CAB39791.1| major intrinsic protein (MIP)-like [Arabidopsis thaliana] gi|7267735|emb|CAB78161.1| major intrinsic protein (MIP)-like [Arabidopsis thaliana] gi|21593153|gb|AAM65102.1| major intrinsic protein (MIP)-like protein [Arabidopsis thaliana] gi|126352290|gb|ABO09890.1| At4g10380 [Arabidopsis thaliana] gi|332657474|gb|AEE82874.1| putative aquaporin NIP5-1 [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query282
TAIR|locus:2122829304 NIP5;1 "NOD26-like intrinsic p 0.957 0.888 0.513 1.6e-61
TAIR|locus:2025822305 NIP6;1 "NOD26-like intrinsic p 0.609 0.563 0.589 5.8e-50
TAIR|locus:2826185323 NIP3;1 "NOD26-like intrinsic p 0.496 0.433 0.436 3.1e-35
TAIR|locus:2156020283 NIP4;1 "NOD26-like intrinsic p 0.482 0.480 0.438 1.7e-34
UNIPROTKB|Q6Z2T3298 NIP2-1 "Aquaporin NIP2-1" [Ory 0.496 0.469 0.468 8.5e-33
TAIR|locus:2156025283 NIP4;2 "NOD26-like intrinsic p 0.482 0.480 0.453 1.8e-30
TAIR|locus:2040904288 NIP2;1 "NOD26-like intrinsic p 0.489 0.479 0.393 1.8e-29
TAIR|locus:2117184294 NIP1;2 "NOD26-like intrinsic p 0.485 0.465 0.462 3.5e-27
TAIR|locus:2117119296 NLM1 "NOD26-like major intrins 0.485 0.462 0.448 3.5e-27
TAIR|locus:2082385275 NIP7;1 "NOD26-like intrinsic p 0.599 0.614 0.394 2e-24
TAIR|locus:2122829 NIP5;1 "NOD26-like intrinsic protein 5;1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 629 (226.5 bits), Expect = 1.6e-61, P = 1.6e-61
 Identities = 152/296 (51%), Positives = 175/296 (59%)

Query:     6 PGTPAVSTPATPGTP--GGALMSAARVDSLSYERQAKSGFKCLPVTAPSSWGH-TNSCSF 62
             P TP   TP TPG P   G  + +   D     R+     KCLPV   +   H T    F
Sbjct:    16 PPTPG--TPGTPGGPLITGMRVDSMSFD----HRKPTPRCKCLPVMGSTWGQHDTCFTDF 69

Query:    63 P--DIPVPNVSLTRKVGAEFVGTFI-----LIFAATAGP---IVNQKYSGAETLI----- 107
             P  D+ +        VG  F+  F      ++     G    I N   +G   +I     
Sbjct:    70 PSPDVSLTRKLGAEFVGT-FILIFTATAGPIVNQKYDGAETLIGNAACAGLAVMIIILST 128

Query:   108 GN-AASHLNPSLTIAFAALRHFPWVQVPAYIMAQVSASICASFALKAVFHPFMSGGVTVP 166
             G+ + +HLNPSLTIAFAALRHFPW  VPAYI AQVSASICASFALK VFHPFMSGGVT+P
Sbjct:   129 GHISGAHLNPSLTIAFAALRHFPWAHVPAYIAAQVSASICASFALKGVFHPFMSGGVTIP 188

Query:   167 SVNTGQAFALEFLITFNLLFXXXXXXXXXXXXGELAGIAVGATVMLNILIAGPSSGGSMN 226
             SV+ GQAFALEF+ITF LLF            GELAGIAVGATVMLNIL+AGPS+GGSMN
Sbjct:   189 SVSLGQAFALEFIITFILLFVVTAVATDTRAVGELAGIAVGATVMLNILVAGPSTGGSMN 248

Query:   227 PVRTLGPAVAAGNYEKLWIFXXXXXXXXXXXXXXXXVVKLRDNETDPPREARSFRR 282
             PVRTLGPAVA+GNY  LW++                 VKL D+ TDPPR  RSFRR
Sbjct:   249 PVRTLGPAVASGNYRSLWVYLVAPTLGAISGAAVYTGVKLNDSVTDPPRPVRSFRR 304
GO:0005215 "transporter activity" evidence=IEA
GO:0006810 "transport" evidence=IEA;ISS
GO:0015250 "water channel activity" evidence=ISS;IDA
GO:0016020 "membrane" evidence=ISS
GO:0005886 "plasma membrane" evidence=IDA
GO:0010036 "response to boron-containing substance" evidence=IEP;IMP
GO:0046713 "borate transport" evidence=IDA
GO:0046715 "borate transmembrane transporter activity" evidence=IDA
GO:0080138 "borate uptake transmembrane transporter activity" evidence=IDA
GO:0080029 "cellular response to boron-containing substance levels" evidence=IEP
GO:0015105 "arsenite transmembrane transporter activity" evidence=IDA
GO:0015700 "arsenite transport" evidence=IDA
GO:0046685 "response to arsenic-containing substance" evidence=RCA;IMP
GO:0016328 "lateral plasma membrane" evidence=IDA
GO:0000041 "transition metal ion transport" evidence=RCA
GO:0006826 "iron ion transport" evidence=RCA
GO:0010106 "cellular response to iron ion starvation" evidence=RCA
GO:0010167 "response to nitrate" evidence=RCA
GO:0015706 "nitrate transport" evidence=RCA
TAIR|locus:2025822 NIP6;1 "NOD26-like intrinsic protein 6;1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2826185 NIP3;1 "NOD26-like intrinsic protein 3;1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2156020 NIP4;1 "NOD26-like intrinsic protein 4;1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q6Z2T3 NIP2-1 "Aquaporin NIP2-1" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
TAIR|locus:2156025 NIP4;2 "NOD26-like intrinsic protein 4;2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2040904 NIP2;1 "NOD26-like intrinsic protein 2;1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2117184 NIP1;2 "NOD26-like intrinsic protein 1;2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2117119 NLM1 "NOD26-like major intrinsic protein 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2082385 NIP7;1 "NOD26-like intrinsic protein 7;1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9ATN1NIP31_MAIZENo assigned EC number0.66440.98580.9205N/Ano
Q9SV84NIP51_ARATHNo assigned EC number0.72660.91130.8453yesno
Q0IWF3NIP31_ORYSJNo assigned EC number0.67010.95740.8681yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query282
PLN00026298 PLN00026, PLN00026, aquaporin NIP; Provisional 1e-153
PLN00182283 PLN00182, PLN00182, putative aquaporin NIP4; Provi 3e-57
PLN00184296 PLN00184, PLN00184, aquaporin NIP1; Provisional 4e-56
PLN00183274 PLN00183, PLN00183, putative aquaporin NIP7; Provi 4e-47
pfam00230218 pfam00230, MIP, Major intrinsic protein 2e-40
cd00333228 cd00333, MIP, Major intrinsic protein (MIP) superf 8e-40
TIGR00861216 TIGR00861, MIP, MIP family channel proteins 3e-34
COG0580241 COG0580, GlpF, Glycerol uptake facilitator and rel 6e-34
PLN00166250 PLN00166, PLN00166, aquaporin TIP2; Provisional 5e-21
PRK05420231 PRK05420, PRK05420, aquaporin Z; Provisional 1e-20
PTZ00016294 PTZ00016, PTZ00016, aquaglyceroporin; Provisional 9e-17
PLN00027252 PLN00027, PLN00027, aquaporin TIP; Provisional 6e-16
PLN00167256 PLN00167, PLN00167, aquaporin TIP5; Provisional 1e-11
>gnl|CDD|177663 PLN00026, PLN00026, aquaporin NIP; Provisional Back     alignment and domain information 
 Score =  429 bits (1104), Expect = e-153
 Identities = 223/300 (74%), Positives = 240/300 (80%), Gaps = 21/300 (7%)

Query: 2   AESEPGTPAVSTPATPGTPGGALMSAARVDSLSY-ERQAKSGFKCLPVTAPSSWGHTNSC 60
            ++E    A STPATPGTPGG L    RVDSLSY +R+     KC PV A   WG   +C
Sbjct: 1   MDNEEVPSAPSTPATPGTPGGPLFGGFRVDSLSYGDRKLLPSCKCFPVEALE-WGRLPTC 59

Query: 61  SFPDIPVPNVSLTRKVGAEFVGTFILIFAATAGPIVNQKYSGAETLIGNAAS-------- 112
            F D+P P+VSLTRK+GAEFVGTFILIFAATAGPIVNQKY GAETLIGNAA         
Sbjct: 60  -FCDLPPPDVSLTRKLGAEFVGTFILIFAATAGPIVNQKYDGAETLIGNAACAGLAVMIV 118

Query: 113 ----------HLNPSLTIAFAALRHFPWVQVPAYIMAQVSASICASFALKAVFHPFMSGG 162
                     HLNPSLTIAFAALRHFPW  VPAYI AQVSASICASFALK VFHPFMSGG
Sbjct: 119 ILSTGHISGAHLNPSLTIAFAALRHFPWKHVPAYIAAQVSASICASFALKGVFHPFMSGG 178

Query: 163 VTVPSVNTGQAFALEFLITFNLLFVVTAVATDTRAVGELAGIAVGATVMLNILIAGPSSG 222
           VTVPSV+TGQAFALEF+ITFNLLFVVTAVATDTRAVGELAGIAVGATVMLNIL+AGPS+G
Sbjct: 179 VTVPSVSTGQAFALEFIITFNLLFVVTAVATDTRAVGELAGIAVGATVMLNILVAGPSTG 238

Query: 223 GSMNPVRTLGPAVAAGNYEKLWIFLLAPTLGALAGATTYTVVKLRDNETDPPREARSFRR 282
           GSMNPVRTLGPAVAAGNY  +WI+L+APTLGALAGA TYT VKLR+ + DPPR  RSFRR
Sbjct: 239 GSMNPVRTLGPAVAAGNYRAIWIYLVAPTLGALAGAGTYTAVKLREEDGDPPRPVRSFRR 298

Length = 298
>gnl|CDD|165748 PLN00182, PLN00182, putative aquaporin NIP4; Provisional Back     alignment and domain information
>gnl|CDD|177778 PLN00184, PLN00184, aquaporin NIP1; Provisional Back     alignment and domain information
>gnl|CDD|215092 PLN00183, PLN00183, putative aquaporin NIP7; Provisional Back     alignment and domain information
>gnl|CDD|215807 pfam00230, MIP, Major intrinsic protein Back     alignment and domain information
>gnl|CDD|238204 cd00333, MIP, Major intrinsic protein (MIP) superfamily Back     alignment and domain information
>gnl|CDD|233156 TIGR00861, MIP, MIP family channel proteins Back     alignment and domain information
>gnl|CDD|223653 COG0580, GlpF, Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism] Back     alignment and domain information
>gnl|CDD|165733 PLN00166, PLN00166, aquaporin TIP2; Provisional Back     alignment and domain information
>gnl|CDD|235453 PRK05420, PRK05420, aquaporin Z; Provisional Back     alignment and domain information
>gnl|CDD|240230 PTZ00016, PTZ00016, aquaglyceroporin; Provisional Back     alignment and domain information
>gnl|CDD|177664 PLN00027, PLN00027, aquaporin TIP; Provisional Back     alignment and domain information
>gnl|CDD|215085 PLN00167, PLN00167, aquaporin TIP5; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 282
PLN00026298 aquaporin NIP; Provisional 100.0
KOG0223238 consensus Aquaporin (major intrinsic protein famil 100.0
PLN00184296 aquaporin NIP1; Provisional 100.0
PLN00182283 putative aquaporin NIP4; Provisional 100.0
PTZ00016294 aquaglyceroporin; Provisional 100.0
PRK05420231 aquaporin Z; Provisional 100.0
COG0580241 GlpF Glycerol uptake facilitator and related perme 100.0
KOG0224316 consensus Aquaporin (major intrinsic protein famil 100.0
PLN00027252 aquaporin TIP; Provisional 100.0
PF00230227 MIP: Major intrinsic protein; InterPro: IPR000425 100.0
PLN00166250 aquaporin TIP2; Provisional 100.0
PLN00167256 aquaporin TIP5; Provisional 100.0
PLN00183274 putative aquaporin NIP7; Provisional 100.0
cd00333228 MIP Major intrinsic protein (MIP) superfamily. Mem 100.0
TIGR00861216 MIP MIP family channel proteins. processes. Some m 100.0
PLN00026 298 aquaporin NIP; Provisional 99.61
PLN00184 296 aquaporin NIP1; Provisional 99.61
PLN00183 274 putative aquaporin NIP7; Provisional 99.55
PLN00166 250 aquaporin TIP2; Provisional 99.51
PLN00167 256 aquaporin TIP5; Provisional 99.48
PLN00182 283 putative aquaporin NIP4; Provisional 99.48
PLN00027 252 aquaporin TIP; Provisional 99.45
cd00333 228 MIP Major intrinsic protein (MIP) superfamily. Mem 99.45
PRK05420 231 aquaporin Z; Provisional 99.43
PTZ00016 294 aquaglyceroporin; Provisional 99.41
TIGR00861216 MIP MIP family channel proteins. processes. Some m 99.35
COG0580 241 GlpF Glycerol uptake facilitator and related perme 99.22
KOG0224 316 consensus Aquaporin (major intrinsic protein famil 99.15
KOG0223 238 consensus Aquaporin (major intrinsic protein famil 99.1
PF00230227 MIP: Major intrinsic protein; InterPro: IPR000425 99.05
COG2116265 FocA Formate/nitrite family of transporters [Inorg 85.71
>PLN00026 aquaporin NIP; Provisional Back     alignment and domain information 
Probab=100.00  E-value=6e-65  Score=468.97  Aligned_cols=279  Identities=77%  Similarity=1.204  Sum_probs=246.8

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCcCccccccCCccc-ccccCCCCccccccCCCCCCCCCCCCCCCCCCCChhHHHHHHHHH
Q 046511            2 AESEPGTPAVSTPATPGTPGGALMSAARVDSLSY-ERQAKSGFKCLPVTAPSSWGHTNSCSFPDIPVPNVSLTRKVGAEF   80 (282)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~c~~~~~~~~w~~~~~~~~~~~~~~~~~l~r~~~aEf   80 (282)
                      |++++.++++|+|+||||||+|||+++|.||++| .||.+++|||++++.. .|.+++.| +.+.+.++.+++|++++||
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~r~~laEf   78 (298)
T PLN00026          1 MDNEEVPSAPSTPATPGTPGGPLFGGFRVDSLSYGDRKLLPSCKCFPVEAL-EWGRLPTC-FCDLPPPDVSLTRKLGAEF   78 (298)
T ss_pred             CCcccCCCCCCCCCCCCCCCCcccccccccccccccccccccccccccccc-cccccCcc-cccCCCCCchHHHHHHHHH
Confidence            3455557778999999999999999999999999 4556999999999875 49999999 7788888999999999999


Q ss_pred             HHHHHHHHHHhhhhhhcccCCC--Cc----hhhh------------hhhhccchHHHHHHHHhcCCCcchhhHHHHHHHH
Q 046511           81 VGTFILIFAATAGPIVNQKYSG--AE----TLIG------------NAASHLNPSLTIAFAALRHFPWVQVPAYIMAQVS  142 (282)
Q Consensus        81 lGT~ilvf~g~~s~~~~~~~~~--~~----~~~g------------~s~aH~NPAVTla~~l~g~~~~~~~~~Yi~aQ~l  142 (282)
                      +|||+|+|+++++.+.+.+..+  ..    ..+|            ++++|+|||||+++++.++++|++.+.||++|++
T Consensus        79 iGTflLvf~g~~~~~~~~~~~~~~~~~~ial~~GlaV~~~i~~~g~ISGaHlNPAVTla~al~g~~~~~~~~~YiiaQil  158 (298)
T PLN00026         79 VGTFILIFAATAGPIVNQKYDGAETLIGNAACAGLAVMIVILSTGHISGAHLNPSLTIAFAALRHFPWKHVPAYIAAQVS  158 (298)
T ss_pred             HHHHHHHHHHHHHHHhccccCCccchHHHHHHHHHHHHHHHHHhhccCccccCHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence            9999999999986655433221  11    1122            2455999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhccccCCCccccccchhHHHHHHHHHHHHHHHhhhheecccCccCchhhHHHHHHHHHHHHHhcCCCc
Q 046511          143 ASICASFALKAVFHPFMSGGVTVPSVNTGQAFALEFLITFNLLFVVTAVATDTRAVGELAGIAVGATVMLNILIAGPSSG  222 (282)
Q Consensus       143 Ga~~ga~l~~~~~~~~~~~~~t~p~~s~~~~~~~E~i~Tf~Lv~~v~~~~~d~~~~~~~~~l~iGl~V~~~~~~~g~~tG  222 (282)
                      ||++|+++++.++++...++.+.|+++..++++.|+++||+|+++++++..|+++.+...++++|++|++.+++.+++||
T Consensus       159 GAi~aa~~~~~~~~~~~~~g~t~p~~s~~~a~~~Efi~TfiLv~vi~~v~~~~~~~~~~~~l~iGl~V~~~~l~~g~~TG  238 (298)
T PLN00026        159 ASICASFALKGVFHPFMSGGVTVPSVSTGQAFALEFIITFNLLFVVTAVATDTRAVGELAGIAVGATVMLNILVAGPSTG  238 (298)
T ss_pred             HHHHHHHHHHHHhcccccCceeeecccHHHHHHHHHHHHHHHHHhheeeecCCCCcCCccchHHHHHHHHHHHHhcccCc
Confidence            99999999999998866667788999999999999999999999999876676655567889999999999999999999


Q ss_pred             CccChhhhHHHHHhccCCCceeeeeehhhHHHHHHHHHHHHhhcCCCCCCCcccccccCC
Q 046511          223 GSMNPVRTLGPAVAAGNYEKLWIFLLAPTLGALAGATTYTVVKLRDNETDPPREARSFRR  282 (282)
Q Consensus       223 ~~lNPAr~lgpal~~~~~~~~wvY~v~P~lGailaa~ly~~l~~~~~~~~~~~~~~~~~~  282 (282)
                      ++|||||||+|+++.++|+++|+||++|++|+++|+++|++++.++++.++++..+||||
T Consensus       239 a~mNPARtlgPal~~~~~~~~wVy~vaPilGAilga~ly~~~~~~~~~~~~~~~~~~~~~  298 (298)
T PLN00026        239 GSMNPVRTLGPAVAAGNYRAIWIYLVAPTLGALAGAGTYTAVKLREEDGDPPRPVRSFRR  298 (298)
T ss_pred             cccChHHHHHHHHhcCCchheeHHHHHHHHHHHHHHHHHHHHhCccccccChhhhhhccC
Confidence            999999999999999999999999999999999999999999999999888888899998

>KOG0223 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism] Back     alignment and domain information
>PLN00184 aquaporin NIP1; Provisional Back     alignment and domain information
>PLN00182 putative aquaporin NIP4; Provisional Back     alignment and domain information
>PTZ00016 aquaglyceroporin; Provisional Back     alignment and domain information
>PRK05420 aquaporin Z; Provisional Back     alignment and domain information
>COG0580 GlpF Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism] Back     alignment and domain information
>KOG0224 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism] Back     alignment and domain information
>PLN00027 aquaporin TIP; Provisional Back     alignment and domain information
>PF00230 MIP: Major intrinsic protein; InterPro: IPR000425 A number of transmembrane (TM) channel proteins can be grouped together on the basis of sequence similarities [, , , , ] Back     alignment and domain information
>PLN00166 aquaporin TIP2; Provisional Back     alignment and domain information
>PLN00167 aquaporin TIP5; Provisional Back     alignment and domain information
>PLN00183 putative aquaporin NIP7; Provisional Back     alignment and domain information
>cd00333 MIP Major intrinsic protein (MIP) superfamily Back     alignment and domain information
>TIGR00861 MIP MIP family channel proteins Back     alignment and domain information
>PLN00026 aquaporin NIP; Provisional Back     alignment and domain information
>PLN00184 aquaporin NIP1; Provisional Back     alignment and domain information
>PLN00183 putative aquaporin NIP7; Provisional Back     alignment and domain information
>PLN00166 aquaporin TIP2; Provisional Back     alignment and domain information
>PLN00167 aquaporin TIP5; Provisional Back     alignment and domain information
>PLN00182 putative aquaporin NIP4; Provisional Back     alignment and domain information
>PLN00027 aquaporin TIP; Provisional Back     alignment and domain information
>cd00333 MIP Major intrinsic protein (MIP) superfamily Back     alignment and domain information
>PRK05420 aquaporin Z; Provisional Back     alignment and domain information
>PTZ00016 aquaglyceroporin; Provisional Back     alignment and domain information
>TIGR00861 MIP MIP family channel proteins Back     alignment and domain information
>COG0580 GlpF Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism] Back     alignment and domain information
>KOG0224 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism] Back     alignment and domain information
>KOG0223 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF00230 MIP: Major intrinsic protein; InterPro: IPR000425 A number of transmembrane (TM) channel proteins can be grouped together on the basis of sequence similarities [, , , , ] Back     alignment and domain information
>COG2116 FocA Formate/nitrite family of transporters [Inorganic ion transport and metabolism] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query282
3iyz_A340 Structure Of Aquaporin-4 S180d Mutant At 10.0 A Res 6e-13
2zz9_A301 Structure Of Aquaporin-4 S180d Mutant At 2.8 A Reso 8e-13
2d57_A301 Double Layered 2d Crystal Structure Of Aquaporin-4 8e-13
3gd8_A223 Crystal Structure Of Human Aquaporin 4 At 1.8 And I 9e-12
2evu_A246 Crystal Structure Of Aquaporin Aqpm At 2.3a Resolut 2e-08
1j4n_A271 Crystal Structure Of The Aqp1 Water Channel Length 4e-08
1fqy_A269 Structure Of Aquaporin-1 At 3.8 A Resolution By Ele 1e-07
2b6o_A263 Electron Crystallographic Structure Of Lens Aquapor 2e-07
1ymg_A263 The Channel Architecture Of Aquaporin O At 2.2 Angs 2e-07
3ne2_A246 Archaeoglobus Fulgidus Aquaporin Length = 246 3e-07
1sor_A235 Aquaporin-0 Membrane Junctions Reveal The Structure 4e-07
3m9i_A220 Electron Crystallographic Structure Of Lens Aquapor 6e-07
1ldf_A281 Crystal Structure Of The E. Coli Glycerol Facilitat 1e-06
1fx8_A281 Crystal Structure Of The E. Coli Glycerol Facilitat 1e-06
3d9s_A266 Human Aquaporin 5 (Aqp5) - High Resolution X-Ray St 2e-05
2b5f_A303 Crystal Structure Of The Spinach Aquaporin Sopip2;1 5e-05
2o9e_A234 Crystal Structure Of Aqpz Mutant T183c Complexed Wi 5e-05
1rc2_B231 2.5 Angstrom Resolution X-Ray Structure Of Aquapori 5e-05
3nk5_A234 Crystal Structure Of Aqpz Mutant F43w Length = 234 5e-05
3cn5_A304 Crystal Structure Of The Spinach Aquaporin Sopip2;1 5e-05
3cll_A300 Crystal Structure Of The Spinach Aquaporin Sopip2;1 5e-05
3cn6_A304 Crystal Structure Of The Spinach Aquaporin Sopip2;1 6e-05
2o9d_A234 Crystal Structure Of Aqpz Mutant T183c. Length = 23 6e-05
1z98_A281 Crystal Structure Of The Spinach Aquaporin Sopip2;1 7e-05
2o9f_A234 Crystal Structure Of Aqpz Mutant L170c Length = 234 8e-05
3nka_A234 Crystal Structure Of Aqpz H174g,T183f Length = 234 9e-05
3nkc_A234 Crystal Structure Of Aqpz F43w,H174g,T183f Length = 1e-04
3c02_A258 X-Ray Structure Of The Aquaglyceroporin From Plasmo 2e-04
>pdb|3IYZ|A Chain A, Structure Of Aquaporin-4 S180d Mutant At 10.0 A Resolution From Electron Micrograph Length = 340 Back     alignment and structure 
Iteration: 1

 Score = 71.2 bits (173), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 47/143 (32%), Positives = 71/143 (49%), Gaps = 7/143 (4%)
Query: 110 AASHLNPSLTIAFAALRHFPWVQVPAYIMAQVSASICASFALKAVFHPFMSGGVTVPSVN 169
           +  H+NP++T+A    R     +   YI AQ   +I  +  L  V  P + GG+ V +V+
Sbjct: 109 SGGHINPAVTVAMVCTRKISIAKSVFYITAQCLGAIIGAGILYLVTPPSVVGGLGVTTVH 168
Query: 170 ----TGQAFALEFLITFNLLFX--XXXXXXXXXXXGELAGIAVGATVMLNILIAGPSSGG 223
                G    +E +ITF L+F              G +A +A+G +V +  L A   +G 
Sbjct: 169 GNLTAGHGLLVELIITFQLVFTIFASCDDKRTDVTGSVA-LAIGFSVAIGHLFAINYTGA 227
Query: 224 SMNPVRTLGPAVAAGNYEKLWIF 246
           SMNP R+ GPAV  GN+E  WI+
Sbjct: 228 SMNPARSFGPAVIMGNWENHWIY 250
>pdb|2ZZ9|A Chain A, Structure Of Aquaporin-4 S180d Mutant At 2.8 A Resolution By Electron Crystallography Length = 301 Back     alignment and structure
>pdb|2D57|A Chain A, Double Layered 2d Crystal Structure Of Aquaporin-4 (Aqp4m23) At 3.2 A Resolution By Electron Crystallography Length = 301 Back     alignment and structure
>pdb|3GD8|A Chain A, Crystal Structure Of Human Aquaporin 4 At 1.8 And Its Mechanism Of Conductance Length = 223 Back     alignment and structure
>pdb|2EVU|A Chain A, Crystal Structure Of Aquaporin Aqpm At 2.3a Resolution Length = 246 Back     alignment and structure
>pdb|1J4N|A Chain A, Crystal Structure Of The Aqp1 Water Channel Length = 271 Back     alignment and structure
>pdb|1FQY|A Chain A, Structure Of Aquaporin-1 At 3.8 A Resolution By Electron Crystallography Length = 269 Back     alignment and structure
>pdb|2B6O|A Chain A, Electron Crystallographic Structure Of Lens Aquaporin-0 (Aqp0) (Lens Mip) At 1.9a Resolution, In A Closed Pore State Length = 263 Back     alignment and structure
>pdb|1YMG|A Chain A, The Channel Architecture Of Aquaporin O At 2.2 Angstrom Resolution Length = 263 Back     alignment and structure
>pdb|3NE2|A Chain A, Archaeoglobus Fulgidus Aquaporin Length = 246 Back     alignment and structure
>pdb|1SOR|A Chain A, Aquaporin-0 Membrane Junctions Reveal The Structure Of A Closed Water Pore Length = 235 Back     alignment and structure
>pdb|3M9I|A Chain A, Electron Crystallographic Structure Of Lens Aquaporin-0 (Aqp Mip) In E. Coli Polar Lipids Length = 220 Back     alignment and structure
>pdb|1LDF|A Chain A, Crystal Structure Of The E. Coli Glycerol Facilitator (Glpf) Mutation W48f, F200t Length = 281 Back     alignment and structure
>pdb|1FX8|A Chain A, Crystal Structure Of The E. Coli Glycerol Facilitator (Glpf) With Substrate Glycerol Length = 281 Back     alignment and structure
>pdb|3D9S|A Chain A, Human Aquaporin 5 (Aqp5) - High Resolution X-Ray Structure Length = 266 Back     alignment and structure
>pdb|2B5F|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In An Open Conformation To 3.9 Resolution Length = 303 Back     alignment and structure
>pdb|2O9E|A Chain A, Crystal Structure Of Aqpz Mutant T183c Complexed With Mercury Length = 234 Back     alignment and structure
>pdb|1RC2|B Chain B, 2.5 Angstrom Resolution X-Ray Structure Of Aquaporin Z Length = 231 Back     alignment and structure
>pdb|3NK5|A Chain A, Crystal Structure Of Aqpz Mutant F43w Length = 234 Back     alignment and structure
>pdb|3CN5|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S115e, S274e Mutant Length = 304 Back     alignment and structure
>pdb|3CLL|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S115e Mutant Length = 300 Back     alignment and structure
>pdb|3CN6|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S274e Mutant Length = 304 Back     alignment and structure
>pdb|2O9D|A Chain A, Crystal Structure Of Aqpz Mutant T183c. Length = 234 Back     alignment and structure
>pdb|1Z98|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In A Closed Conformation Length = 281 Back     alignment and structure
>pdb|2O9F|A Chain A, Crystal Structure Of Aqpz Mutant L170c Length = 234 Back     alignment and structure
>pdb|3NKA|A Chain A, Crystal Structure Of Aqpz H174g,T183f Length = 234 Back     alignment and structure
>pdb|3NKC|A Chain A, Crystal Structure Of Aqpz F43w,H174g,T183f Length = 234 Back     alignment and structure
>pdb|3C02|A Chain A, X-Ray Structure Of The Aquaglyceroporin From Plasmodium Falciparum Length = 258 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query282
2o9g_A234 Aquaporin Z; integral membrane protein, structural 1e-59
3llq_A256 Aquaporin Z 2; aquaporin tetramer, membrane protei 2e-59
2b6o_A263 Aquaporin-0, lens fiber major intrinsic protein; a 5e-56
2zz9_A301 Aquaporin-4; water transport, water channel, two-d 3e-55
2f2b_A246 Aquaporin AQPM; protein, integral membrane protein 4e-55
3iyz_A340 Aquaporin-4; water transport, water channel, two-d 5e-55
3gd8_A223 Aquaporin-4; proton exclusion, structural genomics 6e-52
2w2e_A279 AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating 5e-51
3c02_A258 Aquaglyceroporin; membrane protein, glycerol, wate 7e-50
1j4n_A271 Aquaporin 1; membrane protein, channel protein, tr 1e-48
3d9s_A266 Aquaporin-5, AQP-5; aquaglyceroporin, membrane pro 4e-47
3cn5_A304 Aquaporin; membrane protein, transmembrane, transp 2e-43
1ldf_A281 Glycerol uptake facilitator protein; glycerol-cond 2e-35
>2o9g_A Aquaporin Z; integral membrane protein, structural genomics, P protein structure initiative, center for structures of MEMB proteins, CSMP; HET: BOG; 1.90A {Escherichia coli} PDB: 2o9f_A* 2o9d_A* 2o9e_A 1rc2_B* 2abm_A* 3nk5_A* 3nka_A* 3nkc_A* Length = 234 Back     alignment and structure
 Score =  188 bits (480), Expect = 1e-59
 Identities = 58/229 (25%), Positives = 92/229 (40%), Gaps = 35/229 (15%)

Query: 70  VSLTRKVGAEFVGTFILIFAATAGPIVNQKY-SGAETLIGNAAS---------------- 112
             + RK+ AE  GTF L+F  +   ++   +        G A +                
Sbjct: 2   SHMFRKLAAESFGTFWLVFGGSGSAVLAAGFPELGIGFAGVALAFGLTVLTMAFAVGHIS 61

Query: 113 --HLNPSLTIAFAALRHFPWVQVPAYIMAQVSASICASFALKAVFHPFMS---------- 160
             H NP++TI   A   FP  +V  Y++AQV   I A+  L  +                
Sbjct: 62  GGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLIASGKTGFDAAASGFAS 121

Query: 161 ---GGVTVPSVNTGQAFALEFLITFNLLFVVTAVATDTRAVGELAGIAVGATVMLNILIA 217
              G  +    +   A  +E +++   L V+   ATD  A    A IA+G    L  LI+
Sbjct: 122 NGYGEHSPGGYSMLSALVVELVLSAGFLLVIHG-ATDKFAPAGFAPIAIGLACTLIHLIS 180

Query: 218 GPSSGGSMNPVRTLGPAVAAGNY--EKLWIFLLAPTLGALAGATTYTVV 264
            P +  S+NP R+   A+  G +  E+LW F + P +G + G   Y  +
Sbjct: 181 IPVTNTSVNPARSTAVAIFQGGWALEQLWFFWVVPIVGGIIGGLIYRTL 229
>3llq_A Aquaporin Z 2; aquaporin tetramer, membrane protein, water channel, structu genomics, PSI-2, protein structure initiative; 2.01A {Agrobacterium tumefaciens str} Length = 256 Back     alignment and structure
>2b6o_A Aquaporin-0, lens fiber major intrinsic protein; aquaporin-0 junctions, AQP0, lens MIP, lipid-protein interac membrane, lipid bilayer; HET: MC3; 1.90A {Ovis aries} SCOP: f.19.1.1 PDB: 1ymg_A* 2b6p_A 2c32_A 1sor_A 3m9i_A* Length = 263 Back     alignment and structure
>2zz9_A Aquaporin-4; water transport, water channel, two-dimensional crystal, electron diffraction, electron microscopy, membrane protein; HET: PEE; 2.80A {Rattus norvegicus} PDB: 2d57_A Length = 301 Back     alignment and structure
>2f2b_A Aquaporin AQPM; protein, integral membrane protein, channel, structural GENO PSI-2, protein structure initiative; 1.68A {Methanothermobacter marburgensis str} PDB: 2evu_A 3ne2_A* Length = 246 Back     alignment and structure
>3iyz_A Aquaporin-4; water transport, water channel, two-dimensional C membrane protein, baculovirus expression system, glycoprote membrane; 10.00A {Rattus norvegicus} Length = 340 Back     alignment and structure
>3gd8_A Aquaporin-4; proton exclusion, structural genomics protein structure initiative, center for structures of MEMB proteins, CSMP, glycoprotein; HET: BOG; 1.80A {Homo sapiens} Length = 223 Back     alignment and structure
>2w2e_A AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating, membrane protein; HET: BOG; 1.15A {Komagataella pastoris} PDB: 2w1p_A* Length = 279 Back     alignment and structure
>3c02_A Aquaglyceroporin; membrane protein, glycerol, water, transport, structural GEN PSI-2, protein structure initiative; HET: BOG; 2.05A {Plasmodium falciparum} Length = 258 Back     alignment and structure
>1j4n_A Aquaporin 1; membrane protein, channel protein, transmembrane helices; HET: BNG; 2.20A {Bos taurus} SCOP: f.19.1.1 PDB: 1h6i_A 1fqy_A 1ih5_A Length = 271 Back     alignment and structure
>3d9s_A Aquaporin-5, AQP-5; aquaglyceroporin, membrane protein, water transport, X-RAY diffraction, lipid, phosphatidylserine, PSF, NPA, AR/R, water channel; HET: PS6; 2.00A {Homo sapiens} Length = 266 Back     alignment and structure
>3cn5_A Aquaporin; membrane protein, transmembrane, transport, transport protein; 2.05A {Spinacia oleracea} PDB: 3cn6_A 3cll_A 1z98_A 2b5f_A Length = 304 Back     alignment and structure
>1ldf_A Glycerol uptake facilitator protein; glycerol-conducting membrane channel protein, transport PROT; HET: BOG; 2.10A {Escherichia coli} SCOP: f.19.1.1 PDB: 1fx8_A* 1lda_A* 1ldi_A* Length = 281 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query282
3iyz_A340 Aquaporin-4; water transport, water channel, two-d 100.0
2w2e_A279 AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating 100.0
3gd8_A223 Aquaporin-4; proton exclusion, structural genomics 100.0
3d9s_A266 Aquaporin-5, AQP-5; aquaglyceroporin, membrane pro 100.0
2o9g_A234 Aquaporin Z; integral membrane protein, structural 100.0
2zz9_A301 Aquaporin-4; water transport, water channel, two-d 100.0
1j4n_A271 Aquaporin 1; membrane protein, channel protein, tr 100.0
2b6o_A263 Aquaporin-0, lens fiber major intrinsic protein; a 100.0
3llq_A256 Aquaporin Z 2; aquaporin tetramer, membrane protei 100.0
1ldf_A281 Glycerol uptake facilitator protein; glycerol-cond 100.0
3cn5_A304 Aquaporin; membrane protein, transmembrane, transp 100.0
2f2b_A246 Aquaporin AQPM; protein, integral membrane protein 100.0
3c02_A258 Aquaglyceroporin; membrane protein, glycerol, wate 100.0
2b6o_A 263 Aquaporin-0, lens fiber major intrinsic protein; a 99.5
3llq_A 256 Aquaporin Z 2; aquaporin tetramer, membrane protei 99.35
3d9s_A 266 Aquaporin-5, AQP-5; aquaglyceroporin, membrane pro 99.34
2zz9_A 301 Aquaporin-4; water transport, water channel, two-d 99.33
2o9g_A 234 Aquaporin Z; integral membrane protein, structural 99.3
1j4n_A 271 Aquaporin 1; membrane protein, channel protein, tr 99.29
2f2b_A 246 Aquaporin AQPM; protein, integral membrane protein 99.27
3c02_A 258 Aquaglyceroporin; membrane protein, glycerol, wate 99.27
3iyz_A 340 Aquaporin-4; water transport, water channel, two-d 99.27
2w2e_A 279 AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating 99.26
3gd8_A223 Aquaporin-4; proton exclusion, structural genomics 99.25
3cn5_A 304 Aquaporin; membrane protein, transmembrane, transp 99.24
1ldf_A 281 Glycerol uptake facilitator protein; glycerol-cond 99.24
>3iyz_A Aquaporin-4; water transport, water channel, two-dimensional C membrane protein, baculovirus expression system, glycoprote membrane; 10.00A {Rattus norvegicus} Back     alignment and structure
Probab=100.00  E-value=1.3e-47  Score=357.28  Aligned_cols=200  Identities=32%  Similarity=0.505  Sum_probs=168.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHhhhhhhccc-CC---CCch----hhh------------hhhhccchHHHHHHHHhcCCCc
Q 046511           71 SLTRKVGAEFVGTFILIFAATAGPIVNQK-YS---GAET----LIG------------NAASHLNPSLTIAFAALRHFPW  130 (282)
Q Consensus        71 ~l~r~~~aEflGT~ilvf~g~~s~~~~~~-~~---~~~~----~~g------------~s~aH~NPAVTla~~l~g~~~~  130 (282)
                      +++|++++||+|||+|+|+++++.+.... ..   ....    .+|            +|+||+|||||+++++.|+++|
T Consensus        50 ~l~r~~lAEflGT~lLV~~G~Gs~a~~~~~~~~~~~g~l~Iala~GlaV~~~v~~~g~ISGAHlNPAVTlal~l~G~~~~  129 (340)
T 3iyz_A           50 AFWKAVTAEFLAMLIFVLLSVGSTINWGGSENPLPVDMVLISLCFGLSIATMVQCFGHISGGHINPAVTVAMVCTRKISI  129 (340)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCcchHHHHHHHHHHHHHheeEeeccCcCeeChHHHHHHHHcCCCCH
Confidence            68999999999999999999998764321 11   1111    122            2456999999999999999999


Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHhhccccCCC--cc--ccccchhHHHHHHHHHHHHHHHhhhheecccCc-cCchhhHH
Q 046511          131 VQVPAYIMAQVSASICASFALKAVFHPFMSGG--VT--VPSVNTGQAFALEFLITFNLLFVVTAVATDTRA-VGELAGIA  205 (282)
Q Consensus       131 ~~~~~Yi~aQ~lGa~~ga~l~~~~~~~~~~~~--~t--~p~~s~~~~~~~E~i~Tf~Lv~~v~~~~~d~~~-~~~~~~l~  205 (282)
                      .+++.||+||++||++|++++|.++++...+.  .+  .++.+..++|+.|+++||+|+++|+++..+++. .....|++
T Consensus       130 ~~~~~YiiAQ~lGA~~GA~lv~~~~~~~~~~~lg~~~~~~~~s~~~~f~~E~i~Tf~Lv~~Ila~~d~~~~~~~~~~pl~  209 (340)
T 3iyz_A          130 AKSVFYITAQCLGAIIGAGILYLVTPPSVVGGLGVTTVHGNLTAGHGLLVELIITFQLVFTIFASCDDKRTDVTGSVALA  209 (340)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcchhhcCceeeccCCCccCHHHHHHHHHHHHHHHHHHHHHhhcCccCCcccchhhH
Confidence            99999999999999999999999987654322  22  246789999999999999999999998433332 24578999


Q ss_pred             HHHHHHHHHHHhcCCCcCccChhhhHHHHHhccCCCceeeeeehhhHHHHHHHHHHHHhhcCCCC
Q 046511          206 VGATVMLNILIAGPSSGGSMNPVRTLGPAVAAGNYEKLWIFLLAPTLGALAGATTYTVVKLRDNE  270 (282)
Q Consensus       206 iGl~V~~~~~~~g~~tG~~lNPAr~lgpal~~~~~~~~wvY~v~P~lGailaa~ly~~l~~~~~~  270 (282)
                      ||++|.+.++..+++||++|||||||||+++.++|.++||||+||++|+++|+++|++++.|+.+
T Consensus       210 IGl~v~i~~~~g~~~TG~amNPARdlGPal~~~~w~~~WVywvgPiiGailaallY~~l~~p~~~  274 (340)
T 3iyz_A          210 IGFSVAIGHLFAINYTGASMNPARSFGPAVIMGNWENHWIYWVGPIIGAVLAGALYEYVFCPDVE  274 (340)
T ss_pred             HHHHHHHHHHhccCCccccccHHHHHHHHHHccCCCcEeehhHHHHHHHHHHHHHHHHHhCCChh
Confidence            99999988888889999999999999999999999999999999999999999999999987664
>2w2e_A AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating, membrane protein; HET: BOG; 1.15A {Komagataella pastoris} PDB: 2w1p_A* Back     alignment and structure
>3gd8_A Aquaporin-4; proton exclusion, structural genomics protein structure initiative, center for structures of MEMB proteins, CSMP, glycoprotein; HET: BOG; 1.80A {Homo sapiens} Back     alignment and structure
>3d9s_A Aquaporin-5, AQP-5; aquaglyceroporin, membrane protein, water transport, X-RAY diffraction, lipid, phosphatidylserine, PSF, NPA, AR/R, water channel; HET: PS6; 2.00A {Homo sapiens} Back     alignment and structure
>2o9g_A Aquaporin Z; integral membrane protein, structural genomics, P protein structure initiative, center for structures of MEMB proteins, CSMP; HET: BOG; 1.90A {Escherichia coli} PDB: 2o9f_A* 2o9d_A* 2o9e_A 1rc2_B* 2abm_A* 3nk5_A* 3nka_A* 3nkc_A* Back     alignment and structure
>2zz9_A Aquaporin-4; water transport, water channel, two-dimensional crystal, electron diffraction, electron microscopy, membrane protein; HET: PEE; 2.80A {Rattus norvegicus} PDB: 2d57_A Back     alignment and structure
>1j4n_A Aquaporin 1; membrane protein, channel protein, transmembrane helices; HET: BNG; 2.20A {Bos taurus} SCOP: f.19.1.1 PDB: 1h6i_A 1fqy_A 1ih5_A Back     alignment and structure
>2b6o_A Aquaporin-0, lens fiber major intrinsic protein; aquaporin-0 junctions, AQP0, lens MIP, lipid-protein interac membrane, lipid bilayer; HET: MC3; 1.90A {Ovis aries} SCOP: f.19.1.1 PDB: 1ymg_A* 2b6p_A 2c32_A 1sor_A 3m9i_A* Back     alignment and structure
>3llq_A Aquaporin Z 2; aquaporin tetramer, membrane protein, water channel, structu genomics, PSI-2, protein structure initiative; 2.01A {Agrobacterium tumefaciens str} Back     alignment and structure
>1ldf_A Glycerol uptake facilitator protein; glycerol-conducting membrane channel protein, transport PROT; HET: BOG; 2.10A {Escherichia coli} SCOP: f.19.1.1 PDB: 1fx8_A* 1lda_A* 1ldi_A* Back     alignment and structure
>3cn5_A Aquaporin; membrane protein, transmembrane, transport, transport protein; 2.05A {Spinacia oleracea} PDB: 3cn6_A 3cll_A 1z98_A 2b5f_A Back     alignment and structure
>2f2b_A Aquaporin AQPM; protein, integral membrane protein, channel, structural GENO PSI-2, protein structure initiative; 1.68A {Methanothermobacter marburgensis str} PDB: 2evu_A 3ne2_A* Back     alignment and structure
>3c02_A Aquaglyceroporin; membrane protein, glycerol, water, transport, structural GEN PSI-2, protein structure initiative; HET: BOG; 2.05A {Plasmodium falciparum} Back     alignment and structure
>2b6o_A Aquaporin-0, lens fiber major intrinsic protein; aquaporin-0 junctions, AQP0, lens MIP, lipid-protein interac membrane, lipid bilayer; HET: MC3; 1.90A {Ovis aries} SCOP: f.19.1.1 PDB: 1ymg_A* 2b6p_A 2c32_A 1sor_A 3m9i_A* Back     alignment and structure
>3llq_A Aquaporin Z 2; aquaporin tetramer, membrane protein, water channel, structu genomics, PSI-2, protein structure initiative; 2.01A {Agrobacterium tumefaciens str} Back     alignment and structure
>3d9s_A Aquaporin-5, AQP-5; aquaglyceroporin, membrane protein, water transport, X-RAY diffraction, lipid, phosphatidylserine, PSF, NPA, AR/R, water channel; HET: PS6; 2.00A {Homo sapiens} Back     alignment and structure
>2zz9_A Aquaporin-4; water transport, water channel, two-dimensional crystal, electron diffraction, electron microscopy, membrane protein; HET: PEE; 2.80A {Rattus norvegicus} PDB: 2d57_A Back     alignment and structure
>2o9g_A Aquaporin Z; integral membrane protein, structural genomics, P protein structure initiative, center for structures of MEMB proteins, CSMP; HET: BOG; 1.90A {Escherichia coli} PDB: 2o9f_A* 2o9d_A* 2o9e_A 1rc2_B* 2abm_A* 3nk5_A* 3nka_A* 3nkc_A* Back     alignment and structure
>1j4n_A Aquaporin 1; membrane protein, channel protein, transmembrane helices; HET: BNG; 2.20A {Bos taurus} SCOP: f.19.1.1 PDB: 1h6i_A 1fqy_A 1ih5_A Back     alignment and structure
>2f2b_A Aquaporin AQPM; protein, integral membrane protein, channel, structural GENO PSI-2, protein structure initiative; 1.68A {Methanothermobacter marburgensis str} PDB: 2evu_A 3ne2_A* Back     alignment and structure
>3c02_A Aquaglyceroporin; membrane protein, glycerol, water, transport, structural GEN PSI-2, protein structure initiative; HET: BOG; 2.05A {Plasmodium falciparum} Back     alignment and structure
>3iyz_A Aquaporin-4; water transport, water channel, two-dimensional C membrane protein, baculovirus expression system, glycoprote membrane; 10.00A {Rattus norvegicus} Back     alignment and structure
>2w2e_A AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating, membrane protein; HET: BOG; 1.15A {Komagataella pastoris} PDB: 2w1p_A* Back     alignment and structure
>3gd8_A Aquaporin-4; proton exclusion, structural genomics protein structure initiative, center for structures of MEMB proteins, CSMP, glycoprotein; HET: BOG; 1.80A {Homo sapiens} Back     alignment and structure
>3cn5_A Aquaporin; membrane protein, transmembrane, transport, transport protein; 2.05A {Spinacia oleracea} PDB: 3cn6_A 3cll_A 1z98_A 2b5f_A Back     alignment and structure
>1ldf_A Glycerol uptake facilitator protein; glycerol-conducting membrane channel protein, transport PROT; HET: BOG; 2.10A {Escherichia coli} SCOP: f.19.1.1 PDB: 1fx8_A* 1lda_A* 1ldi_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 282
d1ymga1234 f.19.1.1 (A:6-239) Aquaporin-0 {Cow (Bos taurus) [ 1e-30
d1j4na_249 f.19.1.1 (A:) Aquaporin-1 {Cow (Bos taurus) [TaxId 3e-30
d1fx8a_254 f.19.1.1 (A:) Glycerol uptake facilitator protein 6e-24
d1rc2a_231 f.19.1.1 (A:) Aquaporin Z {Escherichia coli [TaxId 4e-23
>d1ymga1 f.19.1.1 (A:6-239) Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]} Length = 234 Back     information, alignment and structure

class: Membrane and cell surface proteins and peptides
fold: Aquaporin-like
superfamily: Aquaporin-like
family: Aquaporin-like
domain: Aquaporin-0
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  112 bits (281), Expect = 1e-30
 Identities = 49/229 (21%), Positives = 91/229 (39%), Gaps = 21/229 (9%)

Query: 70  VSLTRKVGAEFVGTFILIFAATAGPIVNQKYSGAETLIGNA----------------ASH 113
            S  R + AEF  +   +F      +           +  A                 +H
Sbjct: 2   ASFWRAICAEFFASLFYVFFGLGASLRWAPGPLHVLQVALAFGLALATLVQAVGHISGAH 61

Query: 114 LNPSLTIAFAALRHFPWVQVPAYIMAQVSASICASFALKAVFHPFMSGGV----TVPSVN 169
           +NP++T AF        ++   Y++AQ+  ++  +  L +V  P + G +      P V+
Sbjct: 62  VNPAVTFAFLVGSQMSLLRAICYMVAQLLGAVAGAAVLYSVTPPAVRGNLALNTLHPGVS 121

Query: 170 TGQAFALEFLITFNLLFVVTAVATDTR-AVGELAGIAVGATVMLNILIAGPSSGGSMNPV 228
            GQA  +E  +T   +  + A   + R        +AVG ++ L  L     +G  MNP 
Sbjct: 122 VGQATIVEIFLTLQFVLCIFATYDERRNGRLGSVALAVGFSLTLGHLFGMYYTGAGMNPA 181

Query: 229 RTLGPAVAAGNYEKLWIFLLAPTLGALAGATTYTVVKLRDNETDPPREA 277
           R+  PA+   N+   W++ + P +GA  G+  Y  +     ++   R +
Sbjct: 182 RSFAPAILTRNFTNHWVYWVGPVIGAGLGSLLYDFLLFPRLKSVSERLS 230
>d1j4na_ f.19.1.1 (A:) Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]} Length = 249 Back     information, alignment and structure
>d1fx8a_ f.19.1.1 (A:) Glycerol uptake facilitator protein GlpF {Escherichia coli [TaxId: 562]} Length = 254 Back     information, alignment and structure
>d1rc2a_ f.19.1.1 (A:) Aquaporin Z {Escherichia coli [TaxId: 562]} Length = 231 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query282
d1ymga1234 Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]} 100.0
d1fx8a_254 Glycerol uptake facilitator protein GlpF {Escheric 100.0
d1rc2a_231 Aquaporin Z {Escherichia coli [TaxId: 562]} 100.0
d1j4na_249 Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]} 100.0
d1ymga1 234 Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]} 99.4
d1rc2a_ 231 Aquaporin Z {Escherichia coli [TaxId: 562]} 99.29
d1j4na_ 249 Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]} 99.23
d1fx8a_ 254 Glycerol uptake facilitator protein GlpF {Escheric 99.11
>d1ymga1 f.19.1.1 (A:6-239) Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
class: Membrane and cell surface proteins and peptides
fold: Aquaporin-like
superfamily: Aquaporin-like
family: Aquaporin-like
domain: Aquaporin-0
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=2.1e-46  Score=333.18  Aligned_cols=205  Identities=23%  Similarity=0.394  Sum_probs=173.3

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHhhhhhhcccCCCCch----hh------------hhhhhccchHHHHHHHHhcCCCcchh
Q 046511           70 VSLTRKVGAEFVGTFILIFAATAGPIVNQKYSGAET----LI------------GNAASHLNPSLTIAFAALRHFPWVQV  133 (282)
Q Consensus        70 ~~l~r~~~aEflGT~ilvf~g~~s~~~~~~~~~~~~----~~------------g~s~aH~NPAVTla~~l~g~~~~~~~  133 (282)
                      .++||++++||+||++++|+++++.+.+........    .+            .+|+||+|||||+++++.|+++|+++
T Consensus         2 ~s~~r~~laEf~GT~~lvf~g~gs~~~~~~~~~~~~~ial~~G~~v~~~i~~~g~iSGaH~NPAVTla~~~~g~i~~~~~   81 (234)
T d1ymga1           2 ASFWRAICAEFFASLFYVFFGLGASLRWAPGPLHVLQVALAFGLALATLVQAVGHISGAHVNPAVTFAFLVGSQMSLLRA   81 (234)
T ss_dssp             CTTHHHHHHHHHHHHHHHHHHHHHHCSCC-CHHHHHHHHHHHHHHHHHHHHHHTTTTCCCCSHHHHHHHHHTTSSCHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcchHHHHHHHHHHHHHHHHHHhccccCccCchhhHHHHhccCCChhhe
Confidence            379999999999999999999997654332211111    11            24566999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHhhccccCCC----ccccccchhHHHHHHHHHHHHHHHhhhheecccCc-cCchhhHHHHH
Q 046511          134 PAYIMAQVSASICASFALKAVFHPFMSGG----VTVPSVNTGQAFALEFLITFNLLFVVTAVATDTRA-VGELAGIAVGA  208 (282)
Q Consensus       134 ~~Yi~aQ~lGa~~ga~l~~~~~~~~~~~~----~t~p~~s~~~~~~~E~i~Tf~Lv~~v~~~~~d~~~-~~~~~~l~iGl  208 (282)
                      +.|+++|++||++|++++|.++++.....    .+.|+.+..++++.|++.|++|+++++.+..+++. .....++.+|+
T Consensus        82 ~~Yi~aQ~lGa~~ga~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~t~~lv~~i~~~~~~~~~~~~~~~~l~ig~  161 (234)
T d1ymga1          82 ICYMVAQLLGAVAGAAVLYSVTPPAVRGNLALNTLHPGVSVGQATIVEIFLTLQFVLCIFATYDERRNGRLGSVALAVGF  161 (234)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHSCTTTCTTTTCCCCCTTSCHHHHHHHHHHHHHHHHHHHHHHHCTTSCSCCCCHHHHHHH
T ss_pred             eeeeehHHHHHHHHHHHHHHHcCccccccccccccCccchhhHHHHHHHHHHHHHHHhheeeecCCccCcCcceeEeehH
Confidence            99999999999999999999998764322    33467899999999999999999999987433332 23467899999


Q ss_pred             HHHHHHHHhcCCCcCccChhhhHHHHHhccCCCceeeeeehhhHHHHHHHHHHHHhhcCCCCCCCc
Q 046511          209 TVMLNILIAGPSSGGSMNPVRTLGPAVAAGNYEKLWIFLLAPTLGALAGATTYTVVKLRDNETDPP  274 (282)
Q Consensus       209 ~V~~~~~~~g~~tG~~lNPAr~lgpal~~~~~~~~wvY~v~P~lGailaa~ly~~l~~~~~~~~~~  274 (282)
                      .+.+..+..+++||++|||||||||++++++|+++|+||++|++|+++|+++|++++.|+.++.+|
T Consensus       162 ~v~~~~~~~~~~tG~~~NPAR~~gp~v~~~~~~~~wiy~vgP~~Ga~laa~ly~~~~~~~~~~~~~  227 (234)
T d1ymga1         162 SLTLGHLFGMYYTGAGMNPARSFAPAILTRNFTNHWVYWVGPVIGAGLGSLLYDFLLFPRLKSVSE  227 (234)
T ss_dssp             HHHHHHHHHHHHHCCCCCHHHHHHHHHHHTCCTTTTHHHHHHHHHHHHHHHHHHTTTSCCCCCHHH
T ss_pred             HHHHHHHHhcccccccccchhhhhHHHhccCccCeeeeehHHHHHHHHHHHHHHHHHcCCCcchhh
Confidence            999999999999999999999999999999999999999999999999999999999888775443
>d1fx8a_ f.19.1.1 (A:) Glycerol uptake facilitator protein GlpF {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1rc2a_ f.19.1.1 (A:) Aquaporin Z {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1j4na_ f.19.1.1 (A:) Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1ymga1 f.19.1.1 (A:6-239) Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1rc2a_ f.19.1.1 (A:) Aquaporin Z {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1j4na_ f.19.1.1 (A:) Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1fx8a_ f.19.1.1 (A:) Glycerol uptake facilitator protein GlpF {Escherichia coli [TaxId: 562]} Back     information, alignment and structure