Citrus Sinensis ID: 046512

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------
Protein Sequence
MGSKSMLLQQLAAASIALYLLYETASNYSLFLVYGLDQIGQNTKAVRSSIFDLNCFSKVLHFMAFHPF
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHHHHHHHHccccEEEEEEccHHHHHHcHHHHHHHHHcHHHHHccEEccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHHHHHHHHHcHHcHHHEEEccHHHHHHHHHHHHHHHHHHHHHccEEEEEccccc
Coil and Loop (DISEMBL)
MGSKSMLLQQLAAASIALYLLYETASNYSLFLVYGLDQIGQNTKAVRSSIFDLNCFSKVLHFMAFHPF
Flexible Loop (DISEMBL)
MGSKSMLLQQLAAASIALYLLYETASNYSLFLVYGLDQIGQNTKAVRSSIFDLNCFSKVLHFMAFHPF
Low Complexity Region (SEG)
MGSKSMllqqlaaasialyllyETASNYSLFLVYGLDQIGQNTKAVRSSIFDLNCFSKVLHFMAFHPF
Disordered region (IsUnstruct)
*******LQQLAAASIALYLLYETASNYSLFLVYGLDQIGQNTKAVRSSIFDLNCFSKVLHFMAF***
Disordered Region (DISOPRED)
********QQLAAASIALYLLYETASNYSLFLVYGLDQIGQNTKAVRSSIFDLNCFSKVLHFMAFHPF
Disordered Region (DISEMBL)
MGSKSMLLQQLAAASIALYLLYETASNYSLFLVYGLDQIGQNTKAVRSSIFDLNCFSKVLHFMAFHPF
Disordered Region (DISPRO)
****SMLLQQLAAASIALYLLYETASNYSLFLVYGLDQIGQNTKAVRSSIFDLNCFSKVLHFMAFHPF
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MGSKSMLLQQLAAASIALYLLYETASNYSLFLVYGLDQIGQNTKAVRSSIFDLNCFSKVLHFMAFHPF
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	68	2.2.26 [Sep-21-2011]
O94514	497	Nucleolar protein 56 OS=S	yes	no	0.779	0.106	0.509	2e-07

>sp|O94514|NOP56_SCHPO Nucleolar protein 56 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=nop56 PE=3 SV=1

 Score = 54.3 bits (129), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 27/53 (50%), Positives = 36/53 (67%)

Query: 16 IALYLLYETASNYSLFLVYGLDQIGQNTKAVRSSIFDLNCFSKVLHFMAFHPF 68
          +A YLLYE+A+ YSLF V G DQI   TK V+ S+ D++ F KV+   +F PF
Sbjct: 1  MADYLLYESATGYSLFDVVGADQIAAKTKEVQLSLQDISKFGKVVQLRSFIPF 53

Required for 60S ribosomal subunit synthesis.
Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	68
225456270	558	PREDICTED: nucleolar protein 56-like [Vi	0.779	0.094	0.698	2e-14
297734387	470	unnamed protein product [Vitis vinifera]	0.779	0.112	0.698	5e-14
224121958	540	predicted protein [Populus trichocarpa]	0.779	0.098	0.660	3e-13
224136093	500	predicted protein [Populus trichocarpa]	0.779	0.106	0.660	8e-13
255540297	558	nucleolar protein nop56, putative [Ricin	0.779	0.094	0.679	9e-13
449517593	552	PREDICTED: LOW QUALITY PROTEIN: nucleola	0.735	0.090	0.68	2e-12
449440570	552	PREDICTED: nucleolar protein 56-like [Cu	0.735	0.090	0.68	2e-12
356563188	549	PREDICTED: nucleolar protein 56-like [Gl	0.779	0.096	0.622	6e-12
356513999	556	PREDICTED: nucleolar protein 56-like iso	0.779	0.095	0.622	7e-12
356513997	550	PREDICTED: nucleolar protein 56-like iso	0.779	0.096	0.622	7e-12

>gi|225456270|ref|XP_002283518.1| PREDICTED: nucleolar protein 56-like [Vitis vinifera]

 Score = 83.2 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 37/53 (69%), Positives = 45/53 (84%)

Query: 16 IALYLLYETASNYSLFLVYGLDQIGQNTKAVRSSIFDLNCFSKVLHFMAFHPF 68
          +ALYLLYE+AS Y+LFL +GLD+IGQNT+AVRSS+ DLN F KV+   AFHPF
Sbjct: 1  MALYLLYESASGYALFLAHGLDEIGQNTEAVRSSVSDLNRFGKVVKLAAFHPF 53

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297734387|emb|CBI15634.3| unnamed protein product [Vitis vinifera]

 Score = 81.6 bits (200), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 37/53 (69%), Positives = 45/53 (84%)

Query: 16 IALYLLYETASNYSLFLVYGLDQIGQNTKAVRSSIFDLNCFSKVLHFMAFHPF 68
          +ALYLLYE+AS Y+LFL +GLD+IGQNT+AVRSS+ DLN F KV+   AFHPF
Sbjct: 1  MALYLLYESASGYALFLAHGLDEIGQNTEAVRSSVSDLNRFGKVVKLAAFHPF 53

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224121958|ref|XP_002318715.1| predicted protein [Populus trichocarpa] gi|222859388|gb|EEE96935.1| predicted protein [Populus trichocarpa]

 Score = 79.3 bits (194), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 35/53 (66%), Positives = 44/53 (83%)

Query: 16 IALYLLYETASNYSLFLVYGLDQIGQNTKAVRSSIFDLNCFSKVLHFMAFHPF 68
          +AL+LLYET+S YSLF+  GLD+IGQNT+AVR+S+ DLN F KV+   AFHPF
Sbjct: 1  MALFLLYETSSGYSLFVANGLDEIGQNTEAVRNSVSDLNRFGKVVQLTAFHPF 53

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224136093|ref|XP_002322238.1| predicted protein [Populus trichocarpa] gi|222869234|gb|EEF06365.1| predicted protein [Populus trichocarpa]

 Score = 77.8 bits (190), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 35/53 (66%), Positives = 43/53 (81%)

Query: 16 IALYLLYETASNYSLFLVYGLDQIGQNTKAVRSSIFDLNCFSKVLHFMAFHPF 68
          +ALYLLYET+S YSLF   G+D+IGQNT+AVR+S+ DLN F KV+   AFHPF
Sbjct: 1  MALYLLYETSSGYSLFQANGIDEIGQNTEAVRNSVSDLNRFGKVVQLTAFHPF 53

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255540297|ref|XP_002511213.1| nucleolar protein nop56, putative [Ricinus communis] gi|223550328|gb|EEF51815.1| nucleolar protein nop56, putative [Ricinus communis]

 Score = 77.8 bits (190), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 36/53 (67%), Positives = 43/53 (81%)

Query: 16 IALYLLYETASNYSLFLVYGLDQIGQNTKAVRSSIFDLNCFSKVLHFMAFHPF 68
          +ALYLLYE+AS YSLFL  GLD+IGQNT+AVR+S+ DLN F KV+   AF PF
Sbjct: 1  MALYLLYESASGYSLFLANGLDEIGQNTEAVRNSVADLNRFGKVVQLTAFLPF 53

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449517593|ref|XP_004165830.1| PREDICTED: LOW QUALITY PROTEIN: nucleolar protein 56-like [Cucumis sativus]

 Score = 76.3 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 34/50 (68%), Positives = 41/50 (82%)

Query: 19 YLLYETASNYSLFLVYGLDQIGQNTKAVRSSIFDLNCFSKVLHFMAFHPF 68
          YLLYE+AS Y+LF  +GLD+IGQNT+AVRSS+ DLN F KV+   AFHPF
Sbjct: 5  YLLYESASGYALFHAHGLDEIGQNTEAVRSSVSDLNRFGKVVKLAAFHPF 54

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449440570|ref|XP_004138057.1| PREDICTED: nucleolar protein 56-like [Cucumis sativus]

 Score = 76.3 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 34/50 (68%), Positives = 41/50 (82%)

Query: 19 YLLYETASNYSLFLVYGLDQIGQNTKAVRSSIFDLNCFSKVLHFMAFHPF 68
          YLLYE+AS Y+LF  +GLD+IGQNT+AVRSS+ DLN F KV+   AFHPF
Sbjct: 5  YLLYESASGYALFHAHGLDEIGQNTEAVRSSVSDLNRFGKVVKLAAFHPF 54

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356563188|ref|XP_003549846.1| PREDICTED: nucleolar protein 56-like [Glycine max]

 Score = 74.7 bits (182), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 33/53 (62%), Positives = 45/53 (84%)

Query: 16 IALYLLYETASNYSLFLVYGLDQIGQNTKAVRSSIFDLNCFSKVLHFMAFHPF 68
          +AL+LLYE+AS Y+LF V+GLD+IGQNT+AVR+S+ DLN F KV+   +F+PF
Sbjct: 1  MALFLLYESASGYTLFEVHGLDEIGQNTEAVRNSVSDLNRFGKVVKLRSFNPF 53

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356513999|ref|XP_003525695.1| PREDICTED: nucleolar protein 56-like isoform 2 [Glycine max]

 Score = 74.7 bits (182), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 33/53 (62%), Positives = 45/53 (84%)

Query: 16 IALYLLYETASNYSLFLVYGLDQIGQNTKAVRSSIFDLNCFSKVLHFMAFHPF 68
          +AL+LLYE+AS YSLF V+G+D+IGQNT+AVR+S+ DLN F KV+   +F+PF
Sbjct: 1  MALFLLYESASGYSLFEVHGVDEIGQNTEAVRNSVSDLNRFGKVVKLRSFNPF 53

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356513997|ref|XP_003525694.1| PREDICTED: nucleolar protein 56-like isoform 1 [Glycine max]

 Score = 74.7 bits (182), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 33/53 (62%), Positives = 45/53 (84%)

Query: 16 IALYLLYETASNYSLFLVYGLDQIGQNTKAVRSSIFDLNCFSKVLHFMAFHPF 68
          +AL+LLYE+AS YSLF V+G+D+IGQNT+AVR+S+ DLN F KV+   +F+PF
Sbjct: 1  MALFLLYESASGYSLFEVHGVDEIGQNTEAVRNSVSDLNRFGKVVKLRSFNPF 53

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	68
TAIR|locus:2205270	522	NOP56 "homolog of nucleolar pr	0.676	0.088	0.586	2.4e-09
TAIR|locus:2087755	499	AT3G12860 [Arabidopsis thalian	0.676	0.092	0.565	4.4e-08
POMBASE|SPBC646.10c	497	SPBC646.10c "U3 snoRNP protein	0.676	0.092	0.478	9.6e-05

TAIR|locus:2205270 NOP56 "homolog of nucleolar protein NOP56" [Arabidopsis thaliana (taxid:3702)]

 Score = 146 (56.5 bits), Expect = 2.4e-09, P = 2.4e-09
 Identities = 27/46 (58%), Positives = 37/46 (80%)

Query:    23 ETASNYSLFLVYGLDQIGQNTKAVRSSIFDLNCFSKVLHFMAFHPF 68
             E++S Y LF V+GLD+IGQNT+AVR+S+ DL+ F +V+   AFHPF
Sbjct:     8 ESSSGYGLFEVHGLDEIGQNTEAVRTSVSDLSRFGRVVQLTAFHPF 53

GO:0005634 "nucleus" evidence=ISM

GO:0005730 "nucleolus" evidence=IDA

GO:0005618 "cell wall" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

GO:0009506 "plasmodesma" evidence=IDA

GO:0001510 "RNA methylation" evidence=RCA

GO:0009220 "pyrimidine ribonucleotide biosynthetic process" evidence=RCA

TAIR|locus:2087755 AT3G12860 [Arabidopsis thaliana (taxid:3702)]

 Score = 134 (52.2 bits), Expect = 4.4e-08, P = 4.4e-08
 Identities = 26/46 (56%), Positives = 34/46 (73%)

Query:    23 ETASNYSLFLVYGLDQIGQNTKAVRSSIFDLNCFSKVLHFMAFHPF 68
             E+ S Y LF  +G D+IGQNT+AVRSS+ DL+ F +V+   AFHPF
Sbjct:     8 ESPSGYGLFEGHGSDEIGQNTEAVRSSVSDLSRFGRVVQLTAFHPF 53

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0006606 "protein import into nucleus" evidence=RCA

GO:0009560 "embryo sac egg cell differentiation" evidence=RCA

GO:0042991 "transcription factor import into nucleus" evidence=RCA

POMBASE|SPBC646.10c SPBC646.10c "U3 snoRNP protein Nop56 (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 103 (41.3 bits), Expect = 9.6e-05, P = 9.6e-05
 Identities = 22/46 (47%), Positives = 30/46 (65%)

Query:    23 ETASNYSLFLVYGLDQIGQNTKAVRSSIFDLNCFSKVLHFMAFHPF 68
             E+A+ YSLF V G DQI   TK V+ S+ D++ F KV+   +F PF
Sbjct:     8 ESATGYSLFDVVGADQIAAKTKEVQLSLQDISKFGKVVQLRSFIPF 53


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.327   0.136   0.402    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       68        52   0.00091  102 3  11 22  0.48    26
                                                     29  0.47    26


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  408 (44 KB)
  Total size of DFA:  68 KB (2060 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  5.92u 0.16s 6.08t   Elapsed:  00:00:01
  Total cpu time:  5.92u 0.16s 6.08t   Elapsed:  00:00:01
  Start:  Sat May 11 15:22:00 2013   End:  Sat May 11 15:22:01 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISO;IDA

GO:0005730 "nucleolus" evidence=ISO;IDA

GO:0005732 "small nucleolar ribonucleoprotein complex" evidence=ISO

GO:0006364 "rRNA processing" evidence=ISO

GO:0030532 "small nuclear ribonucleoprotein complex" evidence=ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	68
pfam08156	67	pfam08156, NOP5NT, NOP5NT (NUC127) domain	2e-07

>gnl|CDD|219731 pfam08156, NOP5NT, NOP5NT (NUC127) domain

 Score = 42.6 bits (101), Expect = 2e-07
 Identities = 20/51 (39%), Positives = 30/51 (58%)

Query: 18 LYLLYETASNYSLFLVYGLDQIGQNTKAVRSSIFDLNCFSKVLHFMAFHPF 68
          + +L+ETA+ Y+LF V     +  + K V+ S  DL  FSK++   AF PF
Sbjct: 1  MLVLFETAAGYALFKVKDEKDLIGDDKEVQKSFQDLEKFSKMVKLKAFQPF 51

This N terminal domain is found in RNA-binding proteins of the NOP5 family. Length = 67

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	68
PF08156	67	NOP5NT: NOP5NT (NUC127) domain; InterPro: IPR01297	99.83
KOG2573	498	consensus Ribosome biogenesis protein - Nop56p/Sik	99.32
KOG2572	498	consensus Ribosome biogenesis protein - Nop58p/Nop	99.24

>PF08156 NOP5NT: NOP5NT (NUC127) domain; InterPro: IPR012974 This N-terminal domain is found in RNA-binding proteins of the NOP5 family []

Probab=99.83  E-value=3.6e-22  Score=119.62  Aligned_cols=50  Identities=42%  Similarity=0.725  Sum_probs=45.5

Q ss_pred             HHhHhhccceehhheec-cccccccchHHHHHHhcCHHhhhcceeeccccCC
Q 046512           18 LYLLYETASNYSLFLVY-GLDQIGQNTKAVRSSIFDLNCFSKVLHFMAFHPF   68 (68)
Q Consensus        18 ~~vLfEtAaGYaLFkv~-~~~~i~~~~~~v~~~~~d~~~f~k~VkL~aF~pF   68 (68)
                      ||||||||+||+||+|+ +.++++.. ++|++.+.|+++|+|+|||++|+||
T Consensus         1 m~vLfEtaaGyaLF~v~~~~~~~~~~-~~v~~~~~~~~~f~k~vkL~aF~pF   51 (67)
T PF08156_consen    1 MLVLFETAAGYALFKVKDEKDEIGSD-EEVQKSFSDPEKFSKIVKLKAFSPF   51 (67)
T ss_pred             CEEEEcCCCeeeeeEEechhhhhccH-HHHHHHHcCHHHHhhhhhhhhccCC
Confidence            58999999999999999 55555545 8999999999999999999999999

>KOG2573 consensus Ribosome biogenesis protein - Nop56p/Sik1p [RNA processing and modification; Translation, ribosomal structure and biogenesis]

Probab=99.32  E-value=1.9e-13  Score=105.62  Aligned_cols=53  Identities=45%  Similarity=0.763  Sum_probs=51.1

Q ss_pred             HHHHhHhhccceehhheeccccccccchHHHHHHhcCHHhhhcceeeccccCC
Q 046512           16 IALYLLYETASNYSLFLVYGLDQIGQNTKAVRSSIFDLNCFSKVLHFMAFHPF   68 (68)
Q Consensus        16 m~~~vLfEtAaGYaLFkv~~~~~i~~~~~~v~~~~~d~~~f~k~VkL~aF~pF   68 (68)
                      |..|+|||+|+||+||++.+.|+|+...++|+.++.|+.+|+++|+|.+|.||
T Consensus         1 ~~~~ll~E~a~GY~lf~~~~~dei~~~~~~v~~s~~D~~kf~~vv~l~sf~pF   53 (498)
T KOG2573|consen    1 MMEYLLFESATGYGLFKVKEQDEIGLHLKEVRSSVDDLSKFTQVVQLASFAPF   53 (498)
T ss_pred             CcceEEEeccCceeEEEEechhHhhhhhHHHHHHHHhHHHHHhHhhhhccCCc
Confidence            34799999999999999999999999999999999999999999999999999

>KOG2572 consensus Ribosome biogenesis protein - Nop58p/Nop5p [RNA processing and modification; Translation, ribosomal structure and biogenesis]

Probab=99.24  E-value=7.5e-13  Score=102.39  Aligned_cols=50  Identities=26%  Similarity=0.464  Sum_probs=47.2

Q ss_pred             HHhHhhccceehhheeccccccccchHHHHHHhcCHHhhhcceeeccccCC
Q 046512           18 LYLLYETASNYSLFLVYGLDQIGQNTKAVRSSIFDLNCFSKVLHFMAFHPF   68 (68)
Q Consensus        18 ~~vLfEtAaGYaLFkv~~~~~i~~~~~~v~~~~~d~~~f~k~VkL~aF~pF   68 (68)
                      |+||||||+|||||++.|+..+ .+++++++.|.+++++.++|||++|.+|
T Consensus         1 mlvL~Eta~Gya~fk~~de~kl-~~v~~l~~ef~s~e~a~~~~kl~~f~kf   50 (498)
T KOG2572|consen    1 MLVLFETAAGYALFKVLDEKKL-ANVDDLWKEFSSAEKALKMVKLVAFEKF   50 (498)
T ss_pred             CeEEEeeccceeeeeecchhhH-hhHHHHHHHhcCHHHHHHHHHHHHHHhh
Confidence            4899999999999999988887 5899999999999999999999999998

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	68
1b64_A	91	Elongation factor 1-beta; guanine nucleotide excha	81.11

>1b64_A Elongation factor 1-beta; guanine nucleotide exchange factor, G-protein, translation elongation; NMR {Homo sapiens} SCOP: d.58.12.1

Probab=81.11  E-value=0.68  Score=28.23  Aligned_cols=42  Identities=14%  Similarity=0.268  Sum_probs=33.1

Q ss_pred             ccceehhheec-----cccccccchHHHHHHhcCHHhhhcceeeccccC
Q 046512           24 TASNYSLFLVY-----GLDQIGQNTKAVRSSIFDLNCFSKVLHFMAFHP   67 (68)
Q Consensus        24 tAaGYaLFkv~-----~~~~i~~~~~~v~~~~~d~~~f~k~VkL~aF~p   67 (68)
                      -|.||+|.++.     ++++.  .++++++.++..+..-+.|-..+|.+
T Consensus        44 ~piafGikkL~i~~vveDd~v--~tD~lee~i~~~ed~VqSvdI~~~~k   90 (91)
T 1b64_A           44 VPVGYGIKKLQIQCVVEDDKV--GTDMLEEQITAFEDYVQSMDVAAFNK   90 (91)
T ss_dssp             EESSSSCEEEEEEEEECTTSS--CHHHHHHHHTTCTTTEEEEEESCCBC
T ss_pred             EEEEeeEEEEEEEEEEECCcc--ChHHHHHHHHhccCceeEEEEEEEEc
Confidence            36899998874     44443  68999999999888778888888875

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00