Citrus Sinensis ID: 046541

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90----
Protein Sequence
MPLQRYIKQYNDIELTALGMAIPTVVTIAEALKRDGLASNIEVKISTVNSKKDDEGRFFQKAKIQIVLGKAEKLEKAVVATTAPKETSDTDMKA
Secondary Structure (PSIPRED)
cHHHHHHHHcccEEEEcccccHHHHHHHHHHHHHccEEEEEEEEEEEEEcccccccccccccEEEEEEEccccHHHHHHHcccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHcccEEEEEEEEEEEEcccccccccccccEEEEEEcccccHHHHHcccccccccccccccc
Coil and Loop (DISEMBL)
MPLQRYIKQYNDIELTALGMAIPTVVTIAEALKrdglasniEVKIStvnskkddegrfFQKAKIQIVLGKAEKLEKAVVAttapketsdtdmka
Flexible Loop (DISEMBL)
MPLQRYIKQYNDIELTALGMAIPTVVTIAEALKrdglasnievkistvnskkddegrfFQKAKIQIVLgkaeklekavvattapketsdtdmka
Low Complexity Region (SEG)
MPLQRYIKQYNDIELTALGMAIPTVVTIAEALKRDGLASNIEVKISTVNSKKDDEGRFFQKAKIQIVLGKAEKLEKAVVATTAPKETSDTDMKA
Disordered region (IsUnstruct)
****RYIKQYNDIELTALGMAIPTVVTIAEALKRDGLASNIEVKISTVN******GRFFQKAKIQIVLGKAEKLEKA*****************
Disordered Region (DISOPRED)
**LQRY*KQYNDIELTALGMAIPTVVTIAEALKRDGLASNIEVK******************KIQIVLGKAEKL********************
Disordered Region (DISEMBL)
MPLQRYIKQYNDIELTALGMAIPTVVTIAEALKRDGLASNIEVKISTVNSKKDDEGRFFQKAKIQIVLGKAEKLEKAVV***************
Disordered Region (DISPRO)
MPLQRYIKQYNDIELTALGMAIPTVVTIAEALKRDGLASNIEVKISTVNSKKDDEGRFFQKAKIQIVLGKAEK***A*V***************
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MPLQRYIKQYNDIELTALGMAIPTVVTIAEALKRDGLASNIEVKISTVNSKKDDEGRFFQKAKIQIVLGKAEKLEKAVVATTAPKETSDTDMKA
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	94	2.2.26 [Sep-21-2011]
O22969	130	Uncharacterized protein A	no	no	0.914	0.661	0.5	3e-16

>sp|O22969|Y2416_ARATH Uncharacterized protein At2g34160 OS=Arabidopsis thaliana GN=At2g34160 PE=1 SV=1

 Score = 84.0 bits (206), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 43/86 (50%), Positives = 60/86 (69%)

Query: 4   QRYIKQYNDIELTALGMAIPTVVTIAEALKRDGLASNIEVKISTVNSKKDDEGRFFQKAK 63
           +RY++QYND+EL+ALGMAI TVVT+ E LK +G A   ++  STV+ K D  GR  QKAK
Sbjct: 40  KRYMQQYNDVELSALGMAIATVVTVTEILKNNGFAVEKKIMTSTVDIKDDARGRPVQKAK 99

Query: 64  IQIVLGKAEKLEKAVVATTAPKETSD 89
           I+I L K+EK ++ + A    KE ++
Sbjct: 100 IEITLVKSEKFDELMAAANEEKEDAE 125

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	94
449443233	143	PREDICTED: uncharacterized protein At2g3	0.840	0.552	0.582	2e-17
255561871	153	conserved hypothetical protein [Ricinus	0.893	0.549	0.577	4e-17
225432947	144	PREDICTED: uncharacterized protein At2g3	0.734	0.479	0.637	8e-17
356533643	132	PREDICTED: uncharacterized protein At2g3	0.904	0.643	0.534	8e-17
297737173	131	unnamed protein product [Vitis vinifera]	0.734	0.526	0.637	9e-17
388512731	128	unknown [Lotus japonicus]	0.840	0.617	0.569	1e-16
224131218	148	predicted protein [Populus trichocarpa]	0.765	0.486	0.611	2e-16
297833146	164	nucleic acid binding protein [Arabidopsi	0.840	0.481	0.556	8e-16
356574884	132	PREDICTED: uncharacterized protein At2g3	0.882	0.628	0.523	9e-16
15229322	164	Alba DNA/RNA-binding protein [Arabidopsi	0.840	0.481	0.544	3e-15

>gi|449443233|ref|XP_004139384.1| PREDICTED: uncharacterized protein At2g34160-like [Cucumis sativus] gi|449532210|ref|XP_004173075.1| PREDICTED: uncharacterized protein At2g34160-like [Cucumis sativus]

 Score = 92.8 bits (229), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 46/79 (58%), Positives = 62/79 (78%)

Query: 4   QRYIKQYNDIELTALGMAIPTVVTIAEALKRDGLASNIEVKISTVNSKKDDEGRFFQKAK 63
           +RYI+Q+N++EL+ALGMAI TVVTIAE LK +GLA+  +V  STV  K +++GR  QKAK
Sbjct: 39  KRYIQQHNEVELSALGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAK 98

Query: 64  IQIVLGKAEKLEKAVVATT 82
           I+IVLGK+EK +  + A T
Sbjct: 99  IEIVLGKSEKFDSLMTAAT 117

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255561871|ref|XP_002521944.1| conserved hypothetical protein [Ricinus communis] gi|223538748|gb|EEF40348.1| conserved hypothetical protein [Ricinus communis]

 Score = 92.0 bits (227), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 52/90 (57%), Positives = 67/90 (74%), Gaps = 6/90 (6%)

Query: 4   QRYIKQYNDIELTALGMAIPTVVTIAEALKRDGLASNIEVKISTVNSKKDDEGRFFQKAK 63
           +RYI+Q+N++EL+ALGMAI TVVTIAE LK +GLA+  +V  STV  K +++GR  QKAK
Sbjct: 64  KRYIQQHNEVELSALGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAK 123

Query: 64  IQIVLGKAEK----LEKAVVATTAPKETSD 89
           I+IVLGK+EK    +E A  AT A  ET D
Sbjct: 124 IEIVLGKSEKFDSLMEAANTATEA--ETQD 151

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225432947|ref|XP_002280347.1| PREDICTED: uncharacterized protein At2g34160-like [Vitis vinifera]

 Score = 90.9 bits (224), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 44/69 (63%), Positives = 57/69 (82%)

Query: 4   QRYIKQYNDIELTALGMAIPTVVTIAEALKRDGLASNIEVKISTVNSKKDDEGRFFQKAK 63
           +RYIKQYND+EL+ALGMAIP+VVTIAE LK++G+A+  ++  STV+ K +  GR  QKAK
Sbjct: 48  KRYIKQYNDVELSALGMAIPSVVTIAEILKKNGVATQKKILTSTVDMKWETNGRTVQKAK 107

Query: 64  IQIVLGKAE 72
           I+IVLGK E
Sbjct: 108 IEIVLGKPE 116

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356533643|ref|XP_003535371.1| PREDICTED: uncharacterized protein At2g34160-like [Glycine max]

 Score = 90.9 bits (224), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 46/86 (53%), Positives = 67/86 (77%), Gaps = 1/86 (1%)

Query: 4   QRYIKQYNDIELTALGMAIPTVVTIAEALKRDGLASNIEVKISTVNSKKDDEGRFFQKAK 63
           +RYI+Q+N++EL+ALGMAI TVVTIAE LK +GLA+  +V  STV  K +++GR  QKAK
Sbjct: 38  KRYIQQHNEVELSALGMAIATVVTIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAK 97

Query: 64  IQIVLGKAEKLEKAVVATTAPKETSD 89
           I+IVLGK++K +  +++  AP E+ +
Sbjct: 98  IEIVLGKSDKFDN-LMSPPAPTESEE 122

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297737173|emb|CBI26374.3| unnamed protein product [Vitis vinifera]

 Score = 90.9 bits (224), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 44/69 (63%), Positives = 57/69 (82%)

Query: 4   QRYIKQYNDIELTALGMAIPTVVTIAEALKRDGLASNIEVKISTVNSKKDDEGRFFQKAK 63
           +RYIKQYND+EL+ALGMAIP+VVTIAE LK++G+A+  ++  STV+ K +  GR  QKAK
Sbjct: 35  KRYIKQYNDVELSALGMAIPSVVTIAEILKKNGVATQKKILTSTVDMKWETNGRTVQKAK 94

Query: 64  IQIVLGKAE 72
           I+IVLGK E
Sbjct: 95  IEIVLGKPE 103

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388512731|gb|AFK44427.1| unknown [Lotus japonicus]

 Score = 90.5 bits (223), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 45/79 (56%), Positives = 60/79 (75%)

Query: 4   QRYIKQYNDIELTALGMAIPTVVTIAEALKRDGLASNIEVKISTVNSKKDDEGRFFQKAK 63
           +RYI+Q+N++EL+ALGMAI TVVTIAE LK +GLA+   V  STV  K +++GR  QKAK
Sbjct: 37  KRYIQQHNEVELSALGMAIATVVTIAEILKNNGLATEKRVLTSTVGMKDENKGRLVQKAK 96

Query: 64  IQIVLGKAEKLEKAVVATT 82
           I+IVLGK+EK +  +   T
Sbjct: 97  IEIVLGKSEKFDNLMAPAT 115

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224131218|ref|XP_002328484.1| predicted protein [Populus trichocarpa] gi|222838199|gb|EEE76564.1| predicted protein [Populus trichocarpa]

 Score = 89.4 bits (220), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 44/72 (61%), Positives = 59/72 (81%)

Query: 4   QRYIKQYNDIELTALGMAIPTVVTIAEALKRDGLASNIEVKISTVNSKKDDEGRFFQKAK 63
           +RY++QYN++EL+ALGMAI TVVTIAE LK +GLA+  +V  STV  K +++GR  QKAK
Sbjct: 55  KRYMQQYNEVELSALGMAITTVVTIAEILKNNGLATEKKVLTSTVCMKDENKGRQVQKAK 114

Query: 64  IQIVLGKAEKLE 75
           I+IVLGK+EK +
Sbjct: 115 IEIVLGKSEKFD 126

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297833146|ref|XP_002884455.1| nucleic acid binding protein [Arabidopsis lyrata subsp. lyrata] gi|297330295|gb|EFH60714.1| nucleic acid binding protein [Arabidopsis lyrata subsp. lyrata]

 Score = 87.8 bits (216), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 44/79 (55%), Positives = 60/79 (75%)

Query: 4   QRYIKQYNDIELTALGMAIPTVVTIAEALKRDGLASNIEVKISTVNSKKDDEGRFFQKAK 63
           +RYI+Q+N++EL+ALGMAI TVVTI+E LK +GLA+  +V  STV  K + +GR  QKAK
Sbjct: 57  KRYIQQHNEVELSALGMAITTVVTISEILKNNGLATEKKVLTSTVGMKDETKGRMVQKAK 116

Query: 64  IQIVLGKAEKLEKAVVATT 82
           I+IVLGK++K +  V   T
Sbjct: 117 IEIVLGKSDKFDSLVPPVT 135

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356574884|ref|XP_003555573.1| PREDICTED: uncharacterized protein At2g34160-like [Glycine max]

 Score = 87.4 bits (215), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 44/84 (52%), Positives = 66/84 (78%), Gaps = 1/84 (1%)

Query: 4   QRYIKQYNDIELTALGMAIPTVVTIAEALKRDGLASNIEVKISTVNSKKDDEGRFFQKAK 63
           +RYI+Q++++EL+ALGMAI TVVTI+E LK +GLA+  +V  STV  K +++GR  QKAK
Sbjct: 38  KRYIQQHDEVELSALGMAIATVVTISEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAK 97

Query: 64  IQIVLGKAEKLEKAVVATTAPKET 87
           I+IVLGK++K +  +++  AP E+
Sbjct: 98  IEIVLGKSDKFDN-LMSPPAPTES 120

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15229322|ref|NP_187113.1| Alba DNA/RNA-binding protein [Arabidopsis thaliana] gi|6175166|gb|AAF04892.1|AC011437_7 unknown protein [Arabidopsis thaliana] gi|38454036|gb|AAR20712.1| At3g04620 [Arabidopsis thaliana] gi|38604012|gb|AAR24749.1| At3g04620 [Arabidopsis thaliana] gi|332640586|gb|AEE74107.1| Alba DNA/RNA-binding protein [Arabidopsis thaliana]

 Score = 85.9 bits (211), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 43/79 (54%), Positives = 60/79 (75%)

Query: 4   QRYIKQYNDIELTALGMAIPTVVTIAEALKRDGLASNIEVKISTVNSKKDDEGRFFQKAK 63
           +RYI+Q+N++EL+ALGMAI TVVTI+E LK +GLA+  +V  STV  K + +G+  QKAK
Sbjct: 57  KRYIQQHNEVELSALGMAITTVVTISEILKNNGLATEKKVLTSTVGMKDETKGKMVQKAK 116

Query: 64  IQIVLGKAEKLEKAVVATT 82
           I+IVLGK++K +  V   T
Sbjct: 117 IEIVLGKSDKFDSLVPPVT 135

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	94
TAIR|locus:2084873	164	DAN1 "D NUCLDUO1-ACTIVATEEIC A	0.968	0.554	0.489	7.5e-18
TAIR|locus:2029949	130	AT1G29250 [Arabidopsis thalian	0.914	0.661	0.5	2e-17
TAIR|locus:2055516	130	AT2G34160 [Arabidopsis thalian	0.957	0.692	0.477	3.2e-17

TAIR|locus:2084873 DAN1 "D NUCLDUO1-ACTIVATEEIC ACID BINDING PROTEIN 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 217 (81.4 bits), Expect = 7.5e-18, P = 7.5e-18
 Identities = 46/94 (48%), Positives = 67/94 (71%)

Query:     4 QRYIKQYNDIELTALGMAIPTVVTIAEALKRDGLASNIEVKISTVNSKKDDEGRFFQKAK 63
             +RYI+Q+N++EL+ALGMAI TVVTI+E LK +GLA+  +V  STV  K + +G+  QKAK
Sbjct:    57 KRYIQQHNEVELSALGMAITTVVTISEILKNNGLATEKKVLTSTVGMKDETKGKMVQKAK 116

Query:    64 IQIVLGKAEKLEKAVVATT---APKETSDTDMKA 94
             I+IVLGK++K +  V   T    P+E +  + +A
Sbjct:   117 IEIVLGKSDKFDSLVPPVTNGKTPEEEASAETEA 150

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0048235 "pollen sperm cell differentiation" evidence=IEP

GO:0006302 "double-strand break repair" evidence=RCA

GO:0010332 "response to gamma radiation" evidence=RCA

TAIR|locus:2029949 AT1G29250 [Arabidopsis thaliana (taxid:3702)]

 Score = 213 (80.0 bits), Expect = 2.0e-17, P = 2.0e-17
 Identities = 43/86 (50%), Positives = 60/86 (69%)

Query:     4 QRYIKQYNDIELTALGMAIPTVVTIAEALKRDGLASNIEVKISTVNSKKDDEGRFFQKAK 63
             +RY++QY D+EL+ALGMAI TVVT+AE LK +G A   ++  STV+ K D  GR  QKAK
Sbjct:    40 KRYMQQYTDVELSALGMAIATVVTVAEILKNNGFAVEKKIMTSTVDIKDDSRGRPVQKAK 99

Query:    64 IQIVLGKAEKLEKAVVATTAPKETSD 89
             I+I L K+EK ++ + A    KE ++
Sbjct:   100 IEITLAKSEKFDELMAAANEEKEAAE 125

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0008150 "biological_process" evidence=ND

GO:0005886 "plasma membrane" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

TAIR|locus:2055516 AT2G34160 [Arabidopsis thaliana (taxid:3702)]

 Score = 211 (79.3 bits), Expect = 3.2e-17, P = 3.2e-17
 Identities = 43/90 (47%), Positives = 62/90 (68%)

Query:     4 QRYIKQYNDIELTALGMAIPTVVTIAEALKRDGLASNIEVKISTVNSKKDDEGRFFQKAK 63
             +RY++QYND+EL+ALGMAI TVVT+ E LK +G A   ++  STV+ K D  GR  QKAK
Sbjct:    40 KRYMQQYNDVELSALGMAIATVVTVTEILKNNGFAVEKKIMTSTVDIKDDARGRPVQKAK 99

Query:    64 IQIVLGKAEKLEKAVVATTAPKETSDTDMK 93
             I+I L K+EK ++ + A    KE ++  ++
Sbjct:   100 IEITLVKSEKFDELMAAANEEKEDAEAQVQ 129


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.312   0.128   0.330    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       94        94   0.00091  102 3  10 23  0.39    30
                                                     29  0.42    31


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  502 (53 KB)
  Total size of DFA:  108 KB (2075 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  13.71u 0.07s 13.78t   Elapsed:  00:00:03
  Total cpu time:  13.71u 0.07s 13.78t   Elapsed:  00:00:03
  Start:  Mon May 20 16:58:08 2013   End:  Mon May 20 16:58:11 2013

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005829 "cytosol" evidence=IDA

GO:0009062 "fatty acid catabolic process" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	94
pfam01918	67	pfam01918, Alba, Alba	0.002

>gnl|CDD|216785 pfam01918, Alba, Alba

 Score = 33.4 bits (77), Expect = 0.002
 Identities = 14/40 (35%), Positives = 21/40 (52%)

Query: 8  KQYNDIELTALGMAIPTVVTIAEALKRDGLASNIEVKIST 47
             +++ L  LG AI   V++AE LKR  L    +V + T
Sbjct: 25 GGADEVVLKGLGRAISKAVSVAEILKRRFLKGLHQVNVIT 64

Alba is a novel chromosomal protein that coats archaeal DNA without compacting it. Length = 67

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	94
PRK04015	91	DNA/RNA-binding protein albA; Provisional	99.35
TIGR00285	87	DNA-binding protein Alba. This protein appears so	99.19
PF01918	70	Alba: Alba; InterPro: IPR002775 Members of this fa	98.76
COG1581	91	Ssh10b Archaeal DNA-binding protein [Transcription	98.38
PF12328	144	Rpp20: Rpp20 subunit of nuclear RNase MRP and P; P	96.07
KOG2567	179	consensus Uncharacterized conserved protein [Funct	95.49

>PRK04015 DNA/RNA-binding protein albA; Provisional

Probab=99.35  E-value=2.7e-12  Score=88.16  Aligned_cols=65  Identities=29%  Similarity=0.386  Sum_probs=57.1

Q ss_pred             hhhhcCcEEEecccchhhHHHHHHHHhhhCCe--EEEEEEeeeeeeecCCCCCCcccceeEEEEEeec
Q 046541            6 YIKQYNDIELTALGMAIPTVVTIAEALKRDGL--ASNIEVKISTVNSKKDDEGRFFQKAKIQIVLGKA   71 (94)
Q Consensus         6 ~l~~~~eVeLsALG~AI~tvVtvAEiLK~ngl--At~kkI~Tstv~~~~~~~gr~~qKaKIeI~L~Ks   71 (94)
                      |-++.++|.|.|+|.||+.+|+|||||||+-+  +.+++|.+++..+.++ .||...-.+|||+|.|.
T Consensus        25 l~~g~~eV~iKa~G~aIskAV~vaEilk~r~~~~v~v~~I~i~se~i~~~-~g~~~~VS~IEI~l~k~   91 (91)
T PRK04015         25 FNQGAKEVVIKARGRAISKAVDVAEIVRNRFLPDVEIKEIKIGTEEVTSE-DGRESNVSTIEIVLEKK   91 (91)
T ss_pred             HhCCCCeEEEEEeccccchhhhHHHHHHHhccCCeEEEEEEeccEEeecC-CCcEEEEEEEEEEEecC
Confidence            44588999999999999999999999999988  9999999999988553 56666788999999873

>TIGR00285 DNA-binding protein Alba

Probab=99.19  E-value=6.4e-11  Score=81.06  Aligned_cols=65  Identities=28%  Similarity=0.376  Sum_probs=53.7

Q ss_pred             hhhhhcCcEEEecccchhhHHHHHHHHhhhCCeEE--EEEEeeeeeeecCCCCCCcccceeEEEEEee
Q 046541            5 RYIKQYNDIELTALGMAIPTVVTIAEALKRDGLAS--NIEVKISTVNSKKDDEGRFFQKAKIQIVLGK   70 (94)
Q Consensus         5 r~l~~~~eVeLsALG~AI~tvVtvAEiLK~nglAt--~kkI~Tstv~~~~~~~gr~~qKaKIeI~L~K   70 (94)
                      .|-++.++|.|.|.|.||+.+|.|||+|+|+-+..  +++|..+|..+.. ..||...-.+|||+|.|
T Consensus        21 ~fn~g~~eV~iKarG~aIskAVdvaeiik~r~~~~v~v~~I~i~te~~~~-~~G~~~~VStIEI~l~~   87 (87)
T TIGR00285        21 QLNSGADEVIIKARGRAISRAVDVAEIVRNRFIPDIKIKKIKIGTEEIKS-EQGREVNVSTIEIVLAK   87 (87)
T ss_pred             HHhCCCCeEEEEEecchhhhHHHHHHHHHHhccCCceEEEEEeccEEeec-CCCceeeEEEEEEEEeC
Confidence            45566899999999999999999999999987754  8888877776533 35676678899999976

This protein appears so far only in the Archaea, but may be universal there. There is a single member in three of the first four completed archaeal genomes, and a second copy in A. fulgidus. In Sulfolobus shibatae there is a tandem second copy that is poorly conserved and scores below the trusted cutoff; all other members of the family are conserved at greater than 50 % pairwise identity.

>PF01918 Alba: Alba; InterPro: IPR002775 Members of this family include the archaeal protein Alba and a number of eukaryotic proteins with no known function

Probab=98.76  E-value=1.8e-08  Score=63.09  Aligned_cols=42  Identities=26%  Similarity=0.437  Sum_probs=35.2

Q ss_pred             hHhhh-----hhcCcEEEecccchhhHHHHHHHHhhhC---CeEEEEEEe
Q 046541            3 LQRYI-----KQYNDIELTALGMAIPTVVTIAEALKRD---GLASNIEVK   44 (94)
Q Consensus         3 ~Kr~l-----~~~~eVeLsALG~AI~tvVtvAEiLK~n---glAt~kkI~   44 (94)
                      +.++|     +++++|.|+|+|.||+.+|+||||||++   |+.-+.+++
T Consensus        18 ~~~~L~~~~~~~~~~V~l~g~G~aI~kaI~vaei~K~~~~~~~~qv~~~t   67 (70)
T PF01918_consen   18 ALKLLEGRENGKNDEVVLKGRGKAISKAISVAEILKRRFGEGLYQVNKIT   67 (70)
T ss_dssp             HHHHHT-TTHTTCSEEEEEEECCHHHHHHHHHHHHHHHTSTTTEEEEEEE
T ss_pred             HHHHHhhhhcCCCCEEEEEEEcHHHHHHHHHHHHHHHhhcCCCEEEEEEe
Confidence            45667     9999999999999999999999999998   555555443

The DNA/RNA-binding protein Alba binds double-stranded DNA tightly but without sequence specificity. It binds rRNA and mRNA in vivo, and may play a role in maintaining the structural and functional stability of RNA, and, perhaps, ribosomes. It is distributed uniformly and abundantly on the chromosome. Alba has been shown to bind DNA and affect DNA supercoiling in a temperature dependent manner []. It is regulated by acetylation (alba = acetylation lowers binding affinity) by the Sir2 protein. Alba is proposed to play a role in establishment or maintenance of chromatin architecture and thereby in transcription repression. For further information see [].; GO: 0003676 nucleic acid binding; PDB: 3TOE_B 3IAB_A 1NFJ_A 1NFH_B 2Q3V_B 1VM0_B 1NH9_A 1Y9X_A 3U6Y_C 2H9U_A ....

>COG1581 Ssh10b Archaeal DNA-binding protein [Transcription]

Probab=98.38  E-value=1.6e-06  Score=60.24  Aligned_cols=67  Identities=25%  Similarity=0.380  Sum_probs=57.3

Q ss_pred             HhhhhhcCcEEEecccchhhHHHHHHHHhhhCCe--EEEEEEeeeeeeecCCCCCCcccceeEEEEEeec
Q 046541            4 QRYIKQYNDIELTALGMAIPTVVTIAEALKRDGL--ASNIEVKISTVNSKKDDEGRFFQKAKIQIVLGKA   71 (94)
Q Consensus         4 Kr~l~~~~eVeLsALG~AI~tvVtvAEiLK~ngl--At~kkI~Tstv~~~~~~~gr~~qKaKIeI~L~Ks   71 (94)
                      ..|-++-+||-|-|=|-|||.+|.+|||++|.=+  +-+|.|.++|..++.+ +||...-.-|||+|.|.
T Consensus        23 t~fn~g~~eViiKARGraIskAVDvaeivRnrf~p~v~ik~Iki~se~~~~~-~gr~~~VS~IeI~L~k~   91 (91)
T COG1581          23 TQFNEGADEVIIKARGRAISKAVDVAEIVRNRFIPDVQIKDIKIGTEELEGE-DGRTRNVSTIEIVLAKK   91 (91)
T ss_pred             HHHHcCCCEEEEEecchhhHhhHhHHHHHHHhcCCCceEEEEEecceeeecC-CCceeeEEEEEEEEecC
Confidence            4678889999999999999999999999998755  6788999998877554 56667789999999874

>PF12328 Rpp20: Rpp20 subunit of nuclear RNase MRP and P; PDB: 3IAB_B

Probab=96.07  E-value=0.011  Score=42.98  Aligned_cols=42  Identities=21%  Similarity=0.346  Sum_probs=32.9

Q ss_pred             cCcEEEecccchhhHHHHHHHHhhhCCeEEEEEEeeeeeeecC
Q 046541           10 YNDIELTALGMAIPTVVTIAEALKRDGLASNIEVKISTVNSKK   52 (94)
Q Consensus        10 ~~eVeLsALG~AI~tvVtvAEiLK~nglAt~kkI~Tstv~~~~   52 (94)
                      ..+|-|+|+|.||.-++.||--++++. -..-.|+|+||.+=|
T Consensus        61 ~~~V~v~gtGkAIeKal~la~~Fq~~~-~~~V~V~TgTV~vvD  102 (144)
T PF12328_consen   61 SEEVTVKGTGKAIEKALSLALWFQRKK-GYKVEVRTGTVEVVD  102 (144)
T ss_dssp             -SEEEEEEEGGGHHHHHHHHHHHHHTT----EEEEEEEEEEEE
T ss_pred             ccEEEEEeccHHHHHHHHHHHHHhhcC-CeEEEEEeceEEEEE
Confidence            378999999999999999999999984 334468888886433

>KOG2567 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.49  E-value=0.0046  Score=47.44  Aligned_cols=64  Identities=27%  Similarity=0.339  Sum_probs=45.1

Q ss_pred             hcCcEEEecccchhhHHHHHHHHhhhC--CeEEEEEEeeeee-e-ecCCCCCC-----cccceeEEEEEeecc
Q 046541            9 QYNDIELTALGMAIPTVVTIAEALKRD--GLASNIEVKISTV-N-SKKDDEGR-----FFQKAKIQIVLGKAE   72 (94)
Q Consensus         9 ~~~eVeLsALG~AI~tvVtvAEiLK~n--glAt~kkI~Tstv-~-~~~~~~gr-----~~qKaKIeI~L~Ks~   72 (94)
                      .|-+|-+||.|-||.-.|++||||||.  ||--..+|+--.+ + -+.-.+|-     ..+.+-|-|+|.+.+
T Consensus        44 ~~r~VVfsg~Grai~KTVscaEilKrRipgLhQ~t~l~~~sv~d~W~p~~eGl~pl~vtRhVp~l~IlLS~de  116 (179)
T KOG2567|consen   44 SHRCVVFSGSGRAIVKTVSCAEILKRRIPGLHQVTRLRYTSVEDVWEPTEEGLEPLEVTRHVPMLHILLSLDE  116 (179)
T ss_pred             CeeEEEEecCCcceeeeeeHHHHHhhhCcchhhhceeeeeehhhcccccccCccceEEeeccceEEEEEeccc
Confidence            467899999999999999999999974  7777777765433 2 11122331     124577888888754

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	94
1vm0_A	130	X-Ray Structure Of Gene Product From Arabidopsis Th		5e-16

>pdb|1VM0|A Chain A, X-Ray Structure Of Gene Product From Arabidopsis Thaliana At2g34160 Length = 130

Iteration: 1
 Score = 79.3 bits (194), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 42/90 (46%), Positives = 59/90 (65%)
Query: 4   QRYIKQYNDIELTALGMAIPTVVTIAEALKRDGLASNIEVKISTVNSKKDDEGRFFQKAK 63
           +RY +QYND+EL+ALG AI TVVT+ E LK +G A   ++  S V+ K D  GR  QKAK
Sbjct: 40  KRYXQQYNDVELSALGXAIATVVTVTEILKNNGFAVEKKIXTSIVDIKDDARGRPVQKAK 99
Query: 64  IQIVLGKAEKLEKAVVATTAPKETSDTDMK 93
           I+I L K+EK ++   A    KE ++T ++
Sbjct: 100 IEITLVKSEKFDELXAAANEEKEDAETQVQ 129

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	94
1vm0_A	130	Unknown protein; structural genomics, protein stru	3e-16

>1vm0_A Unknown protein; structural genomics, protein structure initiative, CESG, AT2 unknown function, nitrate; 1.80A {Arabidopsis thaliana} SCOP: d.68.6.2 PDB: 2q3v_A Length = 130

 Score = 67.6 bits (164), Expect = 3e-16
 Identities = 43/91 (47%), Positives = 62/91 (68%)

Query: 4   QRYIKQYNDIELTALGMAIPTVVTIAEALKRDGLASNIEVKISTVNSKKDDEGRFFQKAK 63
           +RY++QYND+EL+ALGMAI TVVT+ E LK +G A   ++  S V+ K D  GR  QKAK
Sbjct: 40  KRYMQQYNDVELSALGMAIATVVTVTEILKNNGFAVEKKIMTSIVDIKDDARGRPVQKAK 99

Query: 64  IQIVLGKAEKLEKAVVATTAPKETSDTDMKA 94
           I+I L K+EK ++ + A    KE ++T ++ 
Sbjct: 100 IEITLVKSEKFDELMAAANEEKEDAETQVQN 130

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	94
1vm0_A	130	Unknown protein; structural genomics, protein stru	99.97
1nfj_A	89	ALBA, conserved hypothetical protein AF1956; SIR2,	99.58
1nh9_A	87	MJA10B, DNA-binding protein ALBA; 2.00A {Methanoca	99.56
2bky_A	97	DNA/RNA-binding protein ALBA 1; archaeal DNA bindi	99.53
2h9u_A	102	DNA/RNA-binding protein ALBA 2; archaea, DNA bindi	99.45
3toe_A	91	MTH10B, DNA/RNA-binding protein ALBA; SAC10B famil	99.14
2bky_X	89	DNA/RNA-binding protein ALBA 2; archaeal DNA bindi	99.06
3iab_B	140	Ribonucleases P/MRP protein subunit POP7; RNAse P,	96.2

>1vm0_A Unknown protein; structural genomics, protein structure initiative, CESG, AT2 unknown function, nitrate; 1.80A {Arabidopsis thaliana} SCOP: d.68.6.2 PDB: 2q3v_A

Probab=99.97  E-value=2.1e-32  Score=196.08  Aligned_cols=89  Identities=48%  Similarity=0.708  Sum_probs=72.1

Q ss_pred             hHhhhhhcCcEEEecccchhhHHHHHHHHhhhCCeEEEEEEeeeeeeecCCCCCCcccceeEEEEEeeccchHHHHhhcc
Q 046541            3 LQRYIKQYNDIELTALGMAIPTVVTIAEALKRDGLASNIEVKISTVNSKKDDEGRFFQKAKIQIVLGKAEKLEKAVVATT   82 (94)
Q Consensus         3 ~Kr~l~~~~eVeLsALG~AI~tvVtvAEiLK~nglAt~kkI~Tstv~~~~~~~gr~~qKaKIeI~L~Ks~~FD~~~a~~~   82 (94)
                      +++||++|++|+|+|||+||+.+|+|||||||+||+++++|.|||++++++.+||+++++||||+|.|+++||++|++++
T Consensus        39 a~~~l~g~~eV~LkA~G~AIskAV~VAEiLkrr~l~~ikkI~t~t~~i~~~~~~r~v~~skIEI~L~k~~~fd~~~~~~~  118 (130)
T 1vm0_A           39 AKRYMQQYNDVELSALGMAIATVVTVTEILKNNGFAVEKKIMTSIVDIKDDARGRPVQKAKIEITLVKSEKFDELMAAAN  118 (130)
T ss_dssp             HHHHHHHHSEEEEEEEGGGHHHHHHHHHHHHHTTSEEEEEEEEEEEEEC------CEEEEEEEEEEEECTTHHHHHHHC-
T ss_pred             HHHHHcCCCEEEEEechHHHHHHHHHHHHHHhcCcceEEEEEeeeEEeccCCCCcccccceEEEEEEecCcHHHHHHHhh
Confidence            68999999999999999999999999999999999999999999999999988999999999999999999999999999


Q ss_pred             CCCCCCCCC
Q 046541           83 APKETSDTD   91 (94)
Q Consensus        83 ~~~e~~~~~   91 (94)
                      ++||+.+++
T Consensus       119 ~~~~~~~~~  127 (130)
T 1vm0_A          119 EEKEDAETQ  127 (130)
T ss_dssp             ---------
T ss_pred             hhhcccccc
Confidence            999986654

>1nfj_A ALBA, conserved hypothetical protein AF1956; SIR2, HDAC, gene regulation, transcription; 2.00A {Archaeoglobus fulgidus} SCOP: d.68.6.1 PDB: 1nfh_A 2z7c_A*

Probab=99.58  E-value=4.8e-15  Score=99.03  Aligned_cols=67  Identities=27%  Similarity=0.372  Sum_probs=58.2

Q ss_pred             hHhhhhh-cCcEEEecccchhhHHHHHHHHhhhCCe--EEEEEEeeeeeeecCCCCCCcccceeEEEEEee
Q 046541            3 LQRYIKQ-YNDIELTALGMAIPTVVTIAEALKRDGL--ASNIEVKISTVNSKKDDEGRFFQKAKIQIVLGK   70 (94)
Q Consensus         3 ~Kr~l~~-~~eVeLsALG~AI~tvVtvAEiLK~ngl--At~kkI~Tstv~~~~~~~gr~~qKaKIeI~L~K   70 (94)
                      +..+|++ +++|.|+|+|.||+.+|.|||||||+.+  ..+++|.++|..+.++ +||..+.+.|+|+|.|
T Consensus        20 ~~~~l~~g~~eV~ika~G~AIskAV~vaeilk~r~~~gl~i~~i~i~s~~i~~e-~g~~r~vs~IeI~L~k   89 (89)
T 1nfj_A           20 TLTQLNEGADEVVIKARGRAISRAVDVAEIVRNRFMPGVKVKEIKIDTEELESE-QGRRSNVSTIEIVLAK   89 (89)
T ss_dssp             HHHHHHTTCSEEEEEEETTHHHHHHHHHHHHHHHTCTTCEEEEEEEEEEECCCB-TTBCCEEEEEEEEEEC
T ss_pred             HHHHHhCCCCEEEEEEecHHHHHHHHHHHHHHHhccCCcEEEEEEEeEEEEEcC-CCcEEEeeEEEEEEEC
Confidence            3455654 8999999999999999999999999987  4679999999998765 5788899999999986

>1nh9_A MJA10B, DNA-binding protein ALBA; 2.00A {Methanocaldococcus jannaschii} SCOP: d.68.6.1

Probab=99.56  E-value=8.8e-15  Score=97.41  Aligned_cols=67  Identities=25%  Similarity=0.362  Sum_probs=53.8

Q ss_pred             hHhhhhhcCcEEEecccchhhHHHHHHHHhhhCCe--EEEEEEeeeeeeecCCCCCCcccceeEEEEEee
Q 046541            3 LQRYIKQYNDIELTALGMAIPTVVTIAEALKRDGL--ASNIEVKISTVNSKKDDEGRFFQKAKIQIVLGK   70 (94)
Q Consensus         3 ~Kr~l~~~~eVeLsALG~AI~tvVtvAEiLK~ngl--At~kkI~Tstv~~~~~~~gr~~qKaKIeI~L~K   70 (94)
                      +...|++.++|.|+|+|.||+.+|+|||||||+.+  .-+++|.+||..+.++ +||..+.+.|+|+|.|
T Consensus        19 ~~~~l~~g~eV~ikA~G~AIskAV~vaeilk~r~~~~l~v~~i~i~s~~i~~e-~g~~r~vS~IeI~L~k   87 (87)
T 1nh9_A           19 VLTQLTSNDEVIIKARGKAINKAVDVAEMIRNRFIKDIKIKKIEIGTDKVKNP-DGREVNVSTIEIVLAK   87 (87)
T ss_dssp             HHHHHHHCSEEEEEEEGGGHHHHHHHHHHHHHHTCTTCEEEEEEEEEEC--------CCCEEEEEEEEEC
T ss_pred             HHHHhcCCCEEEEEEechHHHHHHHHHHHHHHhccCCeEEEEEEEeEEEEEcC-CCcEEEeeEEEEEEEC
Confidence            45667777999999999999999999999999886  4569999999998765 5788899999999986

>2bky_A DNA/RNA-binding protein ALBA 1; archaeal DNA binding protein, DNA condensation, DNA-binding, DNA binding protein; 1.70A {Sulfolobus solfataricus} SCOP: d.68.6.1 PDB: 1h0x_A* 1h0y_A* 1y9x_A

Probab=99.53  E-value=1.9e-14  Score=97.65  Aligned_cols=68  Identities=22%  Similarity=0.297  Sum_probs=59.0

Q ss_pred             hHhhhhh-cCcEEEecccchhhHHHHHHHHhhhCCeE--E-EEEEeeeeeeecCCCCCCcccceeEEEEEeec
Q 046541            3 LQRYIKQ-YNDIELTALGMAIPTVVTIAEALKRDGLA--S-NIEVKISTVNSKKDDEGRFFQKAKIQIVLGKA   71 (94)
Q Consensus         3 ~Kr~l~~-~~eVeLsALG~AI~tvVtvAEiLK~nglA--t-~kkI~Tstv~~~~~~~gr~~qKaKIeI~L~Ks   71 (94)
                      +..+|++ +++|.|+|+|.||+.+|.|||||||+.+-  + .++|.++|..+.++ +||..+.+.|+|+|.|.
T Consensus        26 a~~ll~~g~~eV~ikA~G~AIskAV~vaeilk~r~~~~~l~~~~i~i~s~~i~~e-~G~~r~vS~IeI~L~k~   97 (97)
T 2bky_A           26 ALTLLNQGVSEIVIKARGRAISKAVDTVEIVRNRFLPDKIEIKEIRVGSQVVTSQ-DGRQSRVSTIEIAIRKK   97 (97)
T ss_dssp             HHHHHHTTCCEEEEEEETTHHHHHHHHHHHHHHHTSTTTEEEEEEEEEEEEEEET-TSCEEEEEEEEEEEEEC
T ss_pred             HHHHHhCCCCEEEEEEechHHHHHHHHHHHHHHhccCCceEEEEEEeeeEEEecC-CCcEEEeeEEEEEEEcC
Confidence            3455655 89999999999999999999999999985  4 79999999998765 57888999999999873

>2h9u_A DNA/RNA-binding protein ALBA 2; archaea, DNA binding protein, structural G NPPSFA, national project on protein structural and function analyses; 2.00A {Aeropyrum pernix} PDB: 3u6y_A*

Probab=99.45  E-value=2e-13  Score=93.46  Aligned_cols=69  Identities=22%  Similarity=0.273  Sum_probs=58.5

Q ss_pred             hhh-hhcCcEEEecccchhhHHHHHHHHhhhCCe--EEEEEEeeeeeeecCCC-CCC--cccceeEEEEEeeccc
Q 046541            5 RYI-KQYNDIELTALGMAIPTVVTIAEALKRDGL--ASNIEVKISTVNSKKDD-EGR--FFQKAKIQIVLGKAEK   73 (94)
Q Consensus         5 r~l-~~~~eVeLsALG~AI~tvVtvAEiLK~ngl--At~kkI~Tstv~~~~~~-~gr--~~qKaKIeI~L~Ks~~   73 (94)
                      ..| +++++|.|+|+|.||+.+|+|||||||+.+  .-++.|++|++.+.++. +|+  ..+.+.|+|+|.|.+.
T Consensus        26 ~ll~~g~~eV~ikA~G~AIskAV~vaEilk~r~~~gl~~q~i~i~s~~i~d~~e~g~~~~r~vS~IeI~Lsk~~~  100 (102)
T 2h9u_A           26 TLMEQGTNQVVVKARGRNINRAVDAVEIVRKRFAKNIEIKDIKIDSQEIEVQTPEGQTRTRRVSSIEICLEKAGE  100 (102)
T ss_dssp             HHTSTTCCEEEEEEETTHHHHHHHHHHHHHHHTTTTEEEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEEEECSS
T ss_pred             HHHhCCCCEEEEEEechhhhHHHHHHHHHHHhccCCceEEEEEEeeEEEeccccCCccceeEeeeEEEEEEccCC
Confidence            345 448999999999999999999999999887  55699999999886652 455  6789999999999874

>3toe_A MTH10B, DNA/RNA-binding protein ALBA; SAC10B family, alpha/beta mixed, homodimer, unknown function; 2.20A {Methanothermobacter thermautotrophicusorganism_taxid}

Probab=99.14  E-value=1.3e-10  Score=78.64  Aligned_cols=62  Identities=26%  Similarity=0.296  Sum_probs=54.9

Q ss_pred             hhcCcEEEecccchhhHHHHHHHHhhhCCe--EEEEEEeeeeeeecCCCCCCcccceeEEEEEee
Q 046541            8 KQYNDIELTALGMAIPTVVTIAEALKRDGL--ASNIEVKISTVNSKKDDEGRFFQKAKIQIVLGK   70 (94)
Q Consensus         8 ~~~~eVeLsALG~AI~tvVtvAEiLK~ngl--At~kkI~Tstv~~~~~~~gr~~qKaKIeI~L~K   70 (94)
                      +++++|.|.|.|.||+.+|.||||||++-+  ..+++|.+++.....+ +|+....+.|||+|.|
T Consensus        27 ~g~~eV~ikA~G~aIskAVdvaei~k~R~~~~v~v~~I~I~se~~~~e-~G~~r~VS~IeI~L~k   90 (91)
T 3toe_A           27 GGTSEVILKARGIAISRAVDVAEIVRNRFIPDIQIENIDICTEEIIGN-EGTATNVSAIEIQLRK   90 (91)
T ss_dssp             TTCCEEEEEEETTHHHHHHHHHHHHHHHTCTTCEEEEEEEEEEEEECT-TSSEEEEEEEEEEEEC
T ss_pred             CCCCEEEEEEehhHHHHHHHHHHHHHHhccCCcEEEEEEeeeEEeecC-CCceeEeeEEEEEEEC
Confidence            569999999999999999999999999877  8999999988887544 5677789999999987

>2bky_X DNA/RNA-binding protein ALBA 2; archaeal DNA binding protein, DNA condensation, DNA-binding, DNA binding protein; 1.70A {Sulfolobus solfataricus} SCOP: d.68.6.1 PDB: 2a2y_A 1udv_A

Probab=99.06  E-value=3.8e-10  Score=75.60  Aligned_cols=61  Identities=15%  Similarity=0.139  Sum_probs=51.8

Q ss_pred             hhhhhcCcEEEecccchhhHHHHHHHHhhhCCe--EEEEEEeeeeeeecCCCCCCcccceeEEEEEeec
Q 046541            5 RYIKQYNDIELTALGMAIPTVVTIAEALKRDGL--ASNIEVKISTVNSKKDDEGRFFQKAKIQIVLGKA   71 (94)
Q Consensus         5 r~l~~~~eVeLsALG~AI~tvVtvAEiLK~ngl--At~kkI~Tstv~~~~~~~gr~~qKaKIeI~L~Ks   71 (94)
                      .|-+++++|.|.|+|.||+.+|.|||||||.-+  ..+++|.+++..      ||....+.|+|+|.|.
T Consensus        26 ~ln~g~~eV~ikA~G~aIskAVdvaeilk~R~~~~~~i~~i~i~se~------~~~r~VS~IeI~L~k~   88 (89)
T 2bky_X           26 LFNQGIDEVILKGTGREISKAVDVYNSLKDRLGDGVQLVNVQTGSEV------RDRRRISYILLRLKRV   88 (89)
T ss_dssp             HHHTTCCEEEEEEETTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEEE------ETTEEEEEEEEEEEEC
T ss_pred             HHhCCCCEEEEEEechHHHHHHHHHHHHHHhccCceEEEEEEecccc------CcceEeeeEEEEEEec
Confidence            344568999999999999999999999999766  788899998875      4445789999999874

>3iab_B Ribonucleases P/MRP protein subunit POP7; RNAse P, ribonuclease P, ribonuclease MRP, POP6, POP6P, POP7, POP7P, NME1, yeast, tRNA; 2.70A {Saccharomyces cerevisiae}

Probab=96.20  E-value=0.0056  Score=44.17  Aligned_cols=49  Identities=12%  Similarity=0.295  Sum_probs=39.3

Q ss_pred             Hhhhhh-----cCcEEEecccchhhHHHHHHHHhhhCCeEEEEEEeeeeeeecCC
Q 046541            4 QRYIKQ-----YNDIELTALGMAIPTVVTIAEALKRDGLASNIEVKISTVNSKKD   53 (94)
Q Consensus         4 Kr~l~~-----~~eVeLsALG~AI~tvVtvAEiLK~nglAt~kkI~Tstv~~~~~   53 (94)
                      .++|.+     ..+|-|+|+|-||..++.+|=-|++++= ..-.|+|+||.+=|+
T Consensus        49 ~KlL~~~~k~~~~eV~v~GmGkAIeKal~lAl~fq~~~~-~~V~V~T~TV~vvDd  102 (140)
T 3iab_B           49 NKFLDSVHKQGSSYVAVLGMGKAVEKTLALGCHFQDQKN-KKIEVYTKTIEVLDE  102 (140)
T ss_dssp             HHHHHHHHHHTCSEEEEEEEGGGHHHHHHHHHHHHHTTC-CCEEEEEEEEEEEEE
T ss_pred             HHHHHHhhcCCCcEEEEEechHHHHHHHHHHHHHhhcCC-EEEEEEeceEEEEEe
Confidence            457775     7999999999999999999999999742 333599999965444

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	94
d1vm0a_	99	d.68.6.2 (A:) Hypothetical protein At2g34160 {Thal	1e-14
d1nh9a_	87	d.68.6.1 (A:) DNA-binding protein AlbA {Archaeon M	5e-06
d1nfja_	87	d.68.6.1 (A:) DNA-binding protein AlbA {Archaeon A	1e-04

>d1vm0a_ d.68.6.2 (A:) Hypothetical protein At2g34160 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 99

class: Alpha and beta proteins (a+b)
fold: IF3-like
superfamily: AlbA-like
family: Hypothetical protein At2g34160
domain: Hypothetical protein At2g34160
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 61.4 bits (149), Expect = 1e-14
 Identities = 39/71 (54%), Positives = 51/71 (71%)

Query: 5  RYIKQYNDIELTALGMAIPTVVTIAEALKRDGLASNIEVKISTVNSKKDDEGRFFQKAKI 64
          RY++QYND+EL+ALGMAI TVVT+ E LK +G A   ++  S V+ K D  GR  QKAKI
Sbjct: 23 RYMQQYNDVELSALGMAIATVVTVTEILKNNGFAVEKKIMTSIVDIKDDARGRPVQKAKI 82

Query: 65 QIVLGKAEKLE 75
          +I L K+EK +
Sbjct: 83 EITLVKSEKFD 93

>d1nh9a_ d.68.6.1 (A:) DNA-binding protein AlbA {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 87

class: Alpha and beta proteins (a+b)
fold: IF3-like
superfamily: AlbA-like
family: DNA-binding protein AlbA
domain: DNA-binding protein AlbA
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 38.9 bits (91), Expect = 5e-06
 Identities = 17/68 (25%), Positives = 32/68 (47%), Gaps = 3/68 (4%)

Query: 5  RYIKQYNDIELTALGMAIPTVVTIAEALKR--DGLASNIEVKISTVNSKKDDEGRFFQKA 62
            +   +++ + A G AI   V +AE ++          +++I T    K+ +GR    +
Sbjct: 21 TQLTSNDEVIIKARGKAINKAVDVAEMIRNRFIKDIKIKKIEIGTD-KVKNPDGREVNVS 79

Query: 63 KIQIVLGK 70
           I+IVL K
Sbjct: 80 TIEIVLAK 87

>d1nfja_ d.68.6.1 (A:) DNA-binding protein AlbA {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 87

class: Alpha and beta proteins (a+b)
fold: IF3-like
superfamily: AlbA-like
family: DNA-binding protein AlbA
domain: DNA-binding protein AlbA
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

 Score = 35.1 bits (81), Expect = 1e-04
 Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 3/63 (4%)

Query: 10 YNDIELTALGMAIPTVVTIAEALKRDGLASNI--EVKISTVNSKKDDEGRFFQKAKIQIV 67
           +++ + A G AI   V +AE ++   +      E+KI T    + ++GR    + I+IV
Sbjct: 26 ADEVVIKARGRAISRAVDVAEIVRNRFMPGVKVKEIKIDTE-ELESEQGRRSNVSTIEIV 84

Query: 68 LGK 70
          L K
Sbjct: 85 LAK 87

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	94
d1vm0a_	99	Hypothetical protein At2g34160 {Thale cress (Arabi	99.95
d1nh9a_	87	DNA-binding protein AlbA {Archaeon Methanococcus j	99.37
d1nfja_	87	DNA-binding protein AlbA {Archaeon Archaeoglobus f	99.29
d2bkya1	89	DNA-binding protein AlbA {Archaeon Sulfolobus solf	98.67
d2bkyx1	86	DNA-binding protein AlbA {Archaeon Sulfolobus solf	98.53

>d1vm0a_ d.68.6.2 (A:) Hypothetical protein At2g34160 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: IF3-like
superfamily: AlbA-like
family: Hypothetical protein At2g34160
domain: Hypothetical protein At2g34160
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.95  E-value=1.1e-28  Score=168.13  Aligned_cols=79  Identities=51%  Similarity=0.738  Sum_probs=71.1

Q ss_pred             hHhhhhhcCcEEEecccchhhHHHHHHHHhhhCCeEEEEEEeeeeeeecCCCCCCcccceeEEEEEeeccchHHHHhhc
Q 046541            3 LQRYIKQYNDIELTALGMAIPTVVTIAEALKRDGLASNIEVKISTVNSKKDDEGRFFQKAKIQIVLGKAEKLEKAVVAT   81 (94)
Q Consensus         3 ~Kr~l~~~~eVeLsALG~AI~tvVtvAEiLK~nglAt~kkI~Tstv~~~~~~~gr~~qKaKIeI~L~Ks~~FD~~~a~~   81 (94)
                      ++++|+++++|+|+|||.||+.+|.|||+|+|+|++++++|+||+.++.++.+||+.+++||||+|+|+++||++|+++
T Consensus        21 a~~~l~~~~eV~l~a~G~AI~~aV~vaeil~~r~~~~i~~I~t~s~~~~~~~~gr~~~vs~IEI~L~K~~~F~~~~~~~   99 (99)
T d1vm0a_          21 AKRYMQQYNDVELSALGMAIATVVTVTEILKNNGFAVEKKIMTSIVDIKDDARGRPVQKAKIEITLVKSEKFDELMAAA   99 (99)
T ss_dssp             HHHHHHHHSEEEEEEEGGGHHHHHHHHHHHHHTTSEEEEEEEEEEEEEC------CEEEEEEEEEEEECTTHHHHHHHC
T ss_pred             HHHHhccCCeEEEEecHHHHHHHHHHHHHHHhcCceEEEEEEeeeEEeecCCCCcccccceEEEEEeeCccHHHHhhcC
Confidence            6899999999999999999999999999999999999999999999999999999999999999999999999999874

>d1nh9a_ d.68.6.1 (A:) DNA-binding protein AlbA {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a+b)
fold: IF3-like
superfamily: AlbA-like
family: DNA-binding protein AlbA
domain: DNA-binding protein AlbA
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.37  E-value=8.1e-13  Score=87.24  Aligned_cols=66  Identities=26%  Similarity=0.384  Sum_probs=51.4

Q ss_pred             hHhhhhhcCcEEEecccchhhHHHHHHHHhhh---CCeEEEEEEeeeeeeecCCCCCCcccceeEEEEEee
Q 046541            3 LQRYIKQYNDIELTALGMAIPTVVTIAEALKR---DGLASNIEVKISTVNSKKDDEGRFFQKAKIQIVLGK   70 (94)
Q Consensus         3 ~Kr~l~~~~eVeLsALG~AI~tvVtvAEiLK~---nglAt~kkI~Tstv~~~~~~~gr~~qKaKIeI~L~K   70 (94)
                      +..+|+++++|+|.|.|.||+.+|.|||||||   +| .-+++|..++.....+ +|+....+.|||.|.|
T Consensus        19 ~~~~~~~~~eV~lKArG~aIsrAVdVaEiik~R~~~~-~~i~~i~i~se~~~~~-~g~~r~VS~IeI~L~k   87 (87)
T d1nh9a_          19 VLTQLTSNDEVIIKARGKAINKAVDVAEMIRNRFIKD-IKIKKIEIGTDKVKNP-DGREVNVSTIEIVLAK   87 (87)
T ss_dssp             HHHHHHHCSEEEEEEEGGGHHHHHHHHHHHHHHTCTT-CEEEEEEEEEEC--------CCCEEEEEEEEEC
T ss_pred             HHHHhccCCeEEEEEcchhhhHHHHHHHHHHHhccCC-eEEEEEEecceEEecC-CCceeEEEEEEEEEeC
Confidence            46788999999999999999999999999999   76 5678888777655332 4555677999999986

>d1nfja_ d.68.6.1 (A:) DNA-binding protein AlbA {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: IF3-like
superfamily: AlbA-like
family: DNA-binding protein AlbA
domain: DNA-binding protein AlbA
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.29  E-value=5.6e-12  Score=82.85  Aligned_cols=65  Identities=29%  Similarity=0.421  Sum_probs=51.0

Q ss_pred             Hhhhh-hcCcEEEecccchhhHHHHHHHHhhh---CCeEEEEEEeeeeeeecCCCCCCcccceeEEEEEee
Q 046541            4 QRYIK-QYNDIELTALGMAIPTVVTIAEALKR---DGLASNIEVKISTVNSKKDDEGRFFQKAKIQIVLGK   70 (94)
Q Consensus         4 Kr~l~-~~~eVeLsALG~AI~tvVtvAEiLK~---nglAt~kkI~Tstv~~~~~~~gr~~qKaKIeI~L~K   70 (94)
                      ...|+ ++++|.|.|+|.||+.+|.|||||||   +| ..+++|..++.....+ +||...-+.|||.|.|
T Consensus        19 ~~~l~~g~~eV~ikArG~aIs~AVdVaEi~k~r~~~~-~~i~~i~i~se~~~~e-~g~~r~VS~IeI~L~K   87 (87)
T d1nfja_          19 LTQLNEGADEVVIKARGRAISRAVDVAEIVRNRFMPG-VKVKEIKIDTEELESE-QGRRSNVSTIEIVLAK   87 (87)
T ss_dssp             HHHHHTTCSEEEEEEETTHHHHHHHHHHHHHHHTCTT-CEEEEEEEEEEECCCB-TTBCCEEEEEEEEEEC
T ss_pred             HHHHhCCCCEEEEEEehhHHHHHHHHHHHHHHhccCC-cEEEEEEEccEEEecC-CCceeEEEEEEEEEeC
Confidence            44564 68999999999999999999999999   67 4667777777665322 3444567999999986

>d2bkya1 d.68.6.1 (A:9-97) DNA-binding protein AlbA {Archaeon Sulfolobus solfataricus, Sso10b1 [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: IF3-like
superfamily: AlbA-like
family: DNA-binding protein AlbA
domain: DNA-binding protein AlbA
species: Archaeon Sulfolobus solfataricus, Sso10b1 [TaxId: 2287]

Probab=98.67  E-value=3.3e-08  Score=65.03  Aligned_cols=62  Identities=21%  Similarity=0.285  Sum_probs=50.4

Q ss_pred             hhcCcEEEecccchhhHHHHHHHHhhhCC---eEEEEEEeeeeeeecCCCCCCcccceeEEEEEee
Q 046541            8 KQYNDIELTALGMAIPTVVTIAEALKRDG---LASNIEVKISTVNSKKDDEGRFFQKAKIQIVLGK   70 (94)
Q Consensus         8 ~~~~eVeLsALG~AI~tvVtvAEiLK~ng---lAt~kkI~Tstv~~~~~~~gr~~qKaKIeI~L~K   70 (94)
                      ++.++|.|-|.|.||+.+|.|||+++|..   -..++.|..++.....+ +|+.....-|+|.|.|
T Consensus        24 ~g~~~V~iKArG~aIskAVdVaEiik~R~l~~~~~i~~i~I~se~~~~~-~G~~r~VS~IeI~L~k   88 (89)
T d2bkya1          24 QGVSEIVIKARGRAISKAVDTVEIVRNRFLPDKIEIKEIRVGSQVVTSQ-DGRQSRVSTIEIAIRK   88 (89)
T ss_dssp             TTCCEEEEEEETTHHHHHHHHHHHHHHHTSTTTEEEEEEEEEEEEEEET-TSCEEEEEEEEEEEEE
T ss_pred             CCCCeEEEEEehhhhHHHHHHHHHHHHhcccCceEEEEEEeccEEeecC-CCcEEEEEEEEEEEEc
Confidence            45899999999999999999999999873   35678888877766433 4555677999999987

>d2bkyx1 d.68.6.1 (X:4-89) DNA-binding protein AlbA {Archaeon Sulfolobus solfataricus, Sso10b2 [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: IF3-like
superfamily: AlbA-like
family: DNA-binding protein AlbA
domain: DNA-binding protein AlbA
species: Archaeon Sulfolobus solfataricus, Sso10b2 [TaxId: 2287]

Probab=98.53  E-value=1.2e-07  Score=62.26  Aligned_cols=57  Identities=16%  Similarity=0.174  Sum_probs=48.5

Q ss_pred             hhcCcEEEecccchhhHHHHHHHHhhhC--CeEEEEEEeeeeeeecCCCCCCcccceeEEEEEee
Q 046541            8 KQYNDIELTALGMAIPTVVTIAEALKRD--GLASNIEVKISTVNSKKDDEGRFFQKAKIQIVLGK   70 (94)
Q Consensus         8 ~~~~eVeLsALG~AI~tvVtvAEiLK~n--glAt~kkI~Tstv~~~~~~~gr~~qKaKIeI~L~K   70 (94)
                      ++.++|.|-|.|.||+.+|.|||+++|.  +..-++.|.+++..      |+.....-|||.|.|
T Consensus        26 ~g~~eV~iKArG~aIskAVdVaEiir~R~~~~v~i~~I~i~sE~------~~~r~VS~IeI~l~k   84 (86)
T d2bkyx1          26 QGIDEVILKGTGREISKAVDVYNSLKDRLGDGVQLVNVQTGSEV------RDRRRISYILLRLKR   84 (86)
T ss_dssp             TTCCEEEEEEETTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEEE------ETTEEEEEEEEEEEE
T ss_pred             CCCCEEEEEEechhhHHHHHHHHHHHHhccCCeEEEEEEecccc------CCceEEEEEEEEEEe
Confidence            6789999999999999999999999985  56788888888752      344568999999987