Citrus Sinensis ID: 046561

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200----
Protein Sequence
MDSHSVSHMNSTISENNDNNTAAALMIIGSSSTTTSPPTPSSAGAATSSSSRYENQKRRDWNTFGQYLKNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLRQAWGSLDALIGRLRAAFEENGGKPEANPFGARAVRLYLREVRDVQSKARGISYEKKKRKRPPQQQQQQQQQIPLLPPASSAS
Secondary Structure (PSIPRED)
cccccccccccccccccccccccHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHccccEEEcccccccccccccccccccccccccHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHccccHHHccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHcccccccHHcccHHHHHHHHHHHHHccccEEccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHccccHHHHcccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
mdshsvshmnstisenndnnTAAALMIIgssstttspptpssagaatssssryenqkrrDWNTFGQYlknhrpplslsrcsgahVLEFLRYLDQfgktkvhtpicpfyghpnppapcpcplrqaWGSLDALIGRLRAAFeenggkpeanpfgARAVRLYLREVRDVQSKARgisyekkkrkrppqqqqqqqqqipllppassas
Flexible Loop (DISEMBL)
MDSHSVSHMNSTISENNDNNTAAALMIIGSsstttspptpssagaatssssryenqkrrDWNTFGQYLKNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLRQAWGSLDALIGRLRAAFeenggkpeanpfgARAVRLYLrevrdvqskargisyekkkrkrppqqqqqqqqqipllppassas
Low Complexity Region (SEG)
MDSHSVSHMNSTISENNDNNTAAALMIIgssstttspptpssagaatssssRYENQKRRDWNTFGQYLKNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHpnppapcpcpLRQAWGSLDALIGRLRAAFEENGGKPEANPFGARAVRLYLREVRDVQSKARGISYEKKKRKRppqqqqqqqqqipllppASSAS
Disordered region (IsUnstruct)
************************************************************WNTFGQYLKNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLRQAWGSLDALIGRLRAAFE**********FGARAVRLYLREVR****************************************
Disordered Region (DISOPRED)
*************************************************************NTFGQYLKNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLRQAWGSLDALIGRLRA***************ARAVRLYLREVRDVQ*************************************
Disordered Region (DISEMBL)
************ISENNDNNTAAALMIIGSS*************************KRRDWNTFGQYLKNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLRQAWGSLDALIGRLRAAFEENGGKPEANPFGARAVRLYLREVRDVQSKARGIS******************************
Disordered Region (DISPRO)
**************************************************SRYENQKRRDWNTFGQYLKNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLRQAWGSLDALIGRLRAAFEENGGKPEANPFGARAVRLYLREVRDVQSKARGISYEKKK*************************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDSHSVSHMNSTISENNDNNTAAALMIIGSSSTTTSPPTPSSAGAATSSSSRYENQKRRDWNTFGQYLKNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLRQAWGSLDALIGRLRAAFEENGGKPEANPFGARAVRLYLREVRDVQSKARGISYEKKKRKRPPQQQQQQQQQIPLLPPASSAS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	204
118486110	199	unknown [Populus trichocarpa]	0.882	0.904	0.807	3e-73
224082830	162	predicted protein [Populus trichocarpa]	0.764	0.962	0.885	3e-68
270309068	225	G1-like protein [Selaginella moellendorf	0.764	0.693	0.762	2e-67
356535364	199	PREDICTED: uncharacterized protein LOC10	0.892	0.914	0.72	3e-67
302783941	153	hypothetical protein SELMODRAFT_36560 [S	0.75	1.0	0.793	4e-67
225453046	181	PREDICTED: uncharacterized protein LOC10	0.808	0.911	0.703	1e-66
224066239	149	predicted protein [Populus trichocarpa]	0.651	0.892	0.984	4e-66
358348199	420	hypothetical protein MTR_119s0026 [Medic	0.676	0.328	0.833	4e-66
356524906	247	PREDICTED: uncharacterized protein LOC10	0.745	0.615	0.75	6e-66
449468686	190	PREDICTED: uncharacterized protein LOC10	0.892	0.957	0.771	8e-66

>gi|118486110|gb|ABK94898.1| unknown [Populus trichocarpa]

 Score =  280 bits (716), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 151/187 (80%), Positives = 164/187 (87%), Gaps = 7/187 (3%)

Query: 4   HSVSHMNSTISENNDNNTAAALMIIGSSSTTTSPPTPSSAGAATSSS-SRYENQKRRDWN 62
           +S+  M S+ SEN   N+      IG+S+TT +  + S+    +S++ SRYENQKRRDWN
Sbjct: 2   NSIQEMESSNSENTSFNS------IGNSNTTNTAMSVSNLPPPSSTTPSRYENQKRRDWN 55

Query: 63  TFGQYLKNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLR 122
           TFGQYLKNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLR
Sbjct: 56  TFGQYLKNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLR 115

Query: 123 QAWGSLDALIGRLRAAFEENGGKPEANPFGARAVRLYLREVRDVQSKARGISYEKKKRKR 182
           QAWGSLDALIGRLRAAFEENGGKPEANPFGARAVRLYLREVRD+QSKARGISYEKKKRKR
Sbjct: 116 QAWGSLDALIGRLRAAFEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYEKKKRKR 175

Query: 183 PPQQQQQ 189
           PPQQQ Q
Sbjct: 176 PPQQQIQ 182

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224082830|ref|XP_002306857.1| predicted protein [Populus trichocarpa] gi|222856306|gb|EEE93853.1| predicted protein [Populus trichocarpa]

 Score =  263 bits (672), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 139/157 (88%), Positives = 148/157 (94%), Gaps = 1/157 (0%)

Query: 28  IGSSSTTTSPPTPSSAGAATSSS-SRYENQKRRDWNTFGQYLKNHRPPLSLSRCSGAHVL 86
           IG+S+TT +  + S+    +S++ SRYENQKRRDWNTFGQYLKNHRPPLSLSRCSGAHVL
Sbjct: 6   IGNSNTTNTAMSVSNLPPPSSTTPSRYENQKRRDWNTFGQYLKNHRPPLSLSRCSGAHVL 65

Query: 87  EFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLRQAWGSLDALIGRLRAAFEENGGKP 146
           EFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLRQAWGSLDALIGRLRAAFEENGGKP
Sbjct: 66  EFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLRQAWGSLDALIGRLRAAFEENGGKP 125

Query: 147 EANPFGARAVRLYLREVRDVQSKARGISYEKKKRKRP 183
           EANPFGARAVRLYLREVRD+QSKARGISYEKKKRKRP
Sbjct: 126 EANPFGARAVRLYLREVRDLQSKARGISYEKKKRKRP 162

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|270309068|dbj|BAI52974.1| G1-like protein [Selaginella moellendorffii]

 Score =  260 bits (665), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 119/156 (76%), Positives = 136/156 (87%)

Query: 28  IGSSSTTTSPPTPSSAGAATSSSSRYENQKRRDWNTFGQYLKNHRPPLSLSRCSGAHVLE 87
           +     +TS    +++ +  +  SRYE QKRRDWNTFGQYLKNHRPPL+LSRCSGAHVLE
Sbjct: 13  VAGGGASTSRADANASSSQQAPPSRYEAQKRRDWNTFGQYLKNHRPPLALSRCSGAHVLE 72

Query: 88  FLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLRQAWGSLDALIGRLRAAFEENGGKPE 147
           FLRYLDQFGKTK+H P CPF+G  +PPAPC CPLRQAWGSLDALIGRLRAAFEE+GGKPE
Sbjct: 73  FLRYLDQFGKTKIHAPACPFFGLAHPPAPCACPLRQAWGSLDALIGRLRAAFEEHGGKPE 132

Query: 148 ANPFGARAVRLYLREVRDVQSKARGISYEKKKRKRP 183
           +NPFGARAVRLYLREVR++Q+KARGI+YEKKKRKRP
Sbjct: 133 SNPFGARAVRLYLREVREMQAKARGIAYEKKKRKRP 168

Source: Selaginella moellendorffii

Species: Selaginella moellendorffii

Genus: Selaginella

Family: Selaginellaceae

Order: Selaginellales

Class: Isoetopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356535364|ref|XP_003536216.1| PREDICTED: uncharacterized protein LOC100789834 isoform 1 [Glycine max] gi|356535366|ref|XP_003536217.1| PREDICTED: uncharacterized protein LOC100789834 isoform 2 [Glycine max]

 Score =  259 bits (663), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 144/200 (72%), Positives = 162/200 (81%), Gaps = 18/200 (9%)

Query: 14  SENNDNNTAAALMIIGSSSTTT---------SPPTPSSAGAATSSSSRYENQKRRDWNTF 64
           S N D+N+  A++   S ++T          S P  SS+ + T++ SRYENQKRRDWNTF
Sbjct: 9   SSNTDSNSTKAIINFTSGNSTNFPPAPPPSSSSPPCSSSSSGTTTLSRYENQKRRDWNTF 68

Query: 65  GQYLKNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLRQA 124
           GQYL+NHRPPLSL+RCSGAHVLEFLRYLDQFGKTKVHT +CPF+GHPNPPA CPCPLRQA
Sbjct: 69  GQYLRNHRPPLSLARCSGAHVLEFLRYLDQFGKTKVHTQLCPFFGHPNPPAACPCPLRQA 128

Query: 125 WGSLDALIGRLRAAFEENGGKPEANPFGARAVRLYLREVRDVQSKARGISYEKKKRKRPP 184
           WGSLDALIGRLRAAFEENGGKPEANPFGARAVRLYLREVRD Q+KARGISYEKKKRKRP 
Sbjct: 129 WGSLDALIGRLRAAFEENGGKPEANPFGARAVRLYLREVRDSQAKARGISYEKKKRKRPQ 188

Query: 185 QQQQQQQQQIPLLPPASSAS 204
           Q         P LPP+++AS
Sbjct: 189 Q---------PPLPPSNNAS 199

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302783941|ref|XP_002973743.1| hypothetical protein SELMODRAFT_36560 [Selaginella moellendorffii] gi|302788045|ref|XP_002975792.1| hypothetical protein SELMODRAFT_36559 [Selaginella moellendorffii] gi|300156793|gb|EFJ23421.1| hypothetical protein SELMODRAFT_36559 [Selaginella moellendorffii] gi|300158781|gb|EFJ25403.1| hypothetical protein SELMODRAFT_36560 [Selaginella moellendorffii]

 Score =  259 bits (662), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 123/155 (79%), Positives = 137/155 (88%), Gaps = 2/155 (1%)

Query: 29  GSSSTTTSPPTPSSAGAATSSSSRYENQKRRDWNTFGQYLKNHRPPLSLSRCSGAHVLEF 88
           G +ST+ +    SS+  A  S  RYE QKRRDWNTFGQYLKNHRPPL+LSRCSGAHVLEF
Sbjct: 1   GGASTSRADANASSSQQAPPS--RYEAQKRRDWNTFGQYLKNHRPPLALSRCSGAHVLEF 58

Query: 89  LRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLRQAWGSLDALIGRLRAAFEENGGKPEA 148
           LRYLDQFGKTK+H P CPF+G  +PPAPC CPLRQAWGSLDALIGRLRAAFEE+GGKPE+
Sbjct: 59  LRYLDQFGKTKIHAPACPFFGLAHPPAPCACPLRQAWGSLDALIGRLRAAFEEHGGKPES 118

Query: 149 NPFGARAVRLYLREVRDVQSKARGISYEKKKRKRP 183
           NPFGARAVRLYLREVR++Q+KARGI+YEKKKRKRP
Sbjct: 119 NPFGARAVRLYLREVREMQAKARGIAYEKKKRKRP 153

Source: Selaginella moellendorffii

Species: Selaginella moellendorffii

Genus: Selaginella

Family: Selaginellaceae

Order: Selaginellales

Class: Isoetopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225453046|ref|XP_002267312.1| PREDICTED: uncharacterized protein LOC100260366 [Vitis vinifera]

 Score =  258 bits (659), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 126/179 (70%), Positives = 144/179 (80%), Gaps = 14/179 (7%)

Query: 30  SSSTTTSPPTPSSAGAATSSS----SRYENQKRRDWNTFGQYLKNHRPPLSLSRCSGAHV 85
           S ST  +P  P+++   +S +    SRYENQKRRDWNTFGQYL+NHRPPLSLS C+GAHV
Sbjct: 12  SVSTIINPNNPNTSSTISSPAVYAPSRYENQKRRDWNTFGQYLRNHRPPLSLSLCNGAHV 71

Query: 86  LEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLRQAWGSLDALIGRLRAAFEENGGK 145
           LEFLRYLDQFGKTKVH   CPF+G  NPPAPCPCPLRQAWGSLDALIGRLRAA+EE+GGK
Sbjct: 72  LEFLRYLDQFGKTKVHNQTCPFFGLKNPPAPCPCPLRQAWGSLDALIGRLRAAYEEHGGK 131

Query: 146 PEANPFGARAVRLYLREVRDVQSKARGISYEKKKRKRPPQQQQQQQQQIPLLPPASSAS 204
           PEANPFGARAVRLYLREVRD Q+KARG+SYEKK+++  P+          L PP + AS
Sbjct: 132 PEANPFGARAVRLYLREVRDFQAKARGVSYEKKRKRSKPK----------LAPPPAGAS 180

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224066239|ref|XP_002302041.1| predicted protein [Populus trichocarpa] gi|222843767|gb|EEE81314.1| predicted protein [Populus trichocarpa]

 Score =  256 bits (654), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 131/133 (98%), Positives = 133/133 (100%)

Query: 52  RYENQKRRDWNTFGQYLKNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHP 111
           RYENQKRRDWNTFGQYLKNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHP
Sbjct: 17  RYENQKRRDWNTFGQYLKNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHP 76

Query: 112 NPPAPCPCPLRQAWGSLDALIGRLRAAFEENGGKPEANPFGARAVRLYLREVRDVQSKAR 171
           NPPAPCPCPLRQAWGSLDALIGRLRAAFEENGGKPEANPFGARAVRLYLREVRD+QSKAR
Sbjct: 77  NPPAPCPCPLRQAWGSLDALIGRLRAAFEENGGKPEANPFGARAVRLYLREVRDLQSKAR 136

Query: 172 GISYEKKKRKRPP 184
           G+SYEKKKRKRPP
Sbjct: 137 GVSYEKKKRKRPP 149

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358348199|ref|XP_003638136.1| hypothetical protein MTR_119s0026 [Medicago truncatula] gi|355504071|gb|AES85274.1| hypothetical protein MTR_119s0026 [Medicago truncatula]

 Score =  256 bits (654), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 115/138 (83%), Positives = 125/138 (90%)

Query: 51  SRYENQKRRDWNTFGQYLKNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGH 110
           SRYE+QKRRDWNTFGQYLKNHRPPL+LSRCSGAHVLEFLRYLDQFGKTKVH+  C ++G+
Sbjct: 45  SRYESQKRRDWNTFGQYLKNHRPPLTLSRCSGAHVLEFLRYLDQFGKTKVHSENCAYFGN 104

Query: 111 PNPPAPCPCPLRQAWGSLDALIGRLRAAFEENGGKPEANPFGARAVRLYLREVRDVQSKA 170
            +PP PCPCPL+QAWGSLDALIGRLRAAFEENGG  E NPFGARAVRLYLREVRD Q+KA
Sbjct: 105 SHPPGPCPCPLKQAWGSLDALIGRLRAAFEENGGSQEMNPFGARAVRLYLREVRDAQAKA 164

Query: 171 RGISYEKKKRKRPPQQQQ 188
           RGI YEKKKRK+  Q QQ
Sbjct: 165 RGIGYEKKKRKKLNQNQQ 182

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356524906|ref|XP_003531069.1| PREDICTED: uncharacterized protein LOC100798406 [Glycine max]

 Score =  255 bits (652), Expect = 6e-66,   Method: Compositional matrix adjust.
 Identities = 114/152 (75%), Positives = 128/152 (84%)

Query: 51  SRYENQKRRDWNTFGQYLKNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGH 110
           SRYE+QKRRDWNTFGQYLKNHRPPL+LSRCSGAHVLEFLRYLDQFGKTKVH   C ++G+
Sbjct: 47  SRYESQKRRDWNTFGQYLKNHRPPLTLSRCSGAHVLEFLRYLDQFGKTKVHAETCGYFGN 106

Query: 111 PNPPAPCPCPLRQAWGSLDALIGRLRAAFEENGGKPEANPFGARAVRLYLREVRDVQSKA 170
            +PP PC CPLRQAWGSLDALIGRLRAAFEENGG PE NPFG RAVRLYLREVRD Q+KA
Sbjct: 107 SHPPGPCACPLRQAWGSLDALIGRLRAAFEENGGAPEMNPFGTRAVRLYLREVRDAQAKA 166

Query: 171 RGISYEKKKRKRPPQQQQQQQQQIPLLPPASS 202
           RGI+YEKKKR++P Q          ++  ++S
Sbjct: 167 RGIAYEKKKRRKPQQSGHDHDHDAMMMVGSTS 198

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449468686|ref|XP_004152052.1| PREDICTED: uncharacterized protein LOC101218342 [Cucumis sativus] gi|449532826|ref|XP_004173379.1| PREDICTED: uncharacterized protein LOC101226268 [Cucumis sativus]

 Score =  255 bits (651), Expect = 8e-66,   Method: Compositional matrix adjust.
 Identities = 145/188 (77%), Positives = 160/188 (85%), Gaps = 6/188 (3%)

Query: 9   MNSTISEN---NDNNTAAALMIIGSSSTTTSPPTPSSAGAATSSSSRYENQKRRDWNTFG 65
           M+S +SE    N+NN     +++ +++        SS+ +++SSSSRYENQKRRDWNTF 
Sbjct: 1   MDSILSEFESLNNNNNQPFGVVVTNNTLQNLVVGSSSSSSSSSSSSRYENQKRRDWNTFC 60

Query: 66  QYLKNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLRQAW 125
           QYLKNHRPPL+LSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLRQAW
Sbjct: 61  QYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLRQAW 120

Query: 126 GSLDALIGRLRAAFEENGGKPEANPFGARAVRLYLREVRDVQSKARGISYEKKKRKRPPQ 185
           GSLDALIGRLRAAFEENGG PEANPFGARAVRLYLREVRD+QSKARGISYEKKKRKR   
Sbjct: 121 GSLDALIGRLRAAFEENGGMPEANPFGARAVRLYLREVRDLQSKARGISYEKKKRKR--- 177

Query: 186 QQQQQQQQ 193
            QQQQ  Q
Sbjct: 178 PQQQQIAQ 185

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	204
TAIR|locus:2082170	195	LSH4 "LIGHT SENSITIVE HYPOCOTY	0.872	0.912	0.664	8.1e-60
TAIR|locus:2055897	219	LSH3 "AT2G31160" [Arabidopsis	0.642	0.598	0.877	5.7e-59
TAIR|locus:2007382	196	LSH6 "AT1G07090" [Arabidopsis	0.642	0.668	0.755	1.3e-52
TAIR|locus:2147494	190	LSH1 "AT5G28490" [Arabidopsis	0.637	0.684	0.769	1.1e-50
TAIR|locus:2171263	182	LSH5 "AT5G58500" [Arabidopsis	0.642	0.719	0.734	1.2e-49
TAIR|locus:2100850	201	LSH2 "AT3G04510" [Arabidopsis	0.637	0.646	0.715	2.9e-48
TAIR|locus:2041514	177	LSH10 "AT2G42610" [Arabidopsis	0.642	0.740	0.709	7.7e-48
TAIR|locus:505006228	195	LSH7 "AT1G78815" [Arabidopsis	0.642	0.671	0.618	9.3e-43
TAIR|locus:2124067	191	LSH9 "AT4G18610" [Arabidopsis	0.642	0.685	0.621	5.3e-40
TAIR|locus:2015591	164	LSH8 "AT1G16910" [Arabidopsis	0.632	0.786	0.581	2.1e-36

TAIR|locus:2082170 LSH4 "LIGHT SENSITIVE HYPOCOTYLS 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 613 (220.8 bits), Expect = 8.1e-60, P = 8.1e-60
 Identities = 121/182 (66%), Positives = 129/182 (70%)

Query:     1 MDSHSVSHMNSTISENNDNNTAAALMIIXXXXXXXXXXXXXXXXXXXXXXXRYENQKRRD 60
             MD H +  M +T   N  +NT   +                          RYENQKRRD
Sbjct:     1 MD-HIIGFMGTT---NMSHNTNLMIAAAATTTTTSSSSSSSSGGSGTNQLSRYENQKRRD 56

Query:    61 WNTFGQYLKNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHXXXXXXXXXX 120
             WNTFGQYL+NHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHT +CPF+GH          
Sbjct:    57 WNTFGQYLRNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHTHLCPFFGHPNPPAPCACP 116

Query:   121 LRQAWGSLDALIGRLRAAFEENGGKPEANPFGARAVRLYLREVRDVQSKARGISYEKKKR 180
             LRQAWGSLDALIGRLRAAFEENGG PE NPFGARAVRLYLREVRD Q+KARGISYEKKKR
Sbjct:   117 LRQAWGSLDALIGRLRAAFEENGGSPETNPFGARAVRLYLREVRDSQAKARGISYEKKKR 176

Query:   181 KR 182
             KR
Sbjct:   177 KR 178

GO:0005739 "mitochondrion" evidence=ISM

TAIR|locus:2055897 LSH3 "AT2G31160" [Arabidopsis thaliana (taxid:3702)]

 Score = 605 (218.0 bits), Expect = 5.7e-59, P = 5.7e-59
 Identities = 115/131 (87%), Positives = 118/131 (90%)

Query:    52 RYENQKRRDWNTFGQYLKNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHX 111
             RYENQKRRDWNTFGQYL+NHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHT IC FYGH 
Sbjct:    54 RYENQKRRDWNTFGQYLRNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHTNICHFYGHP 113

Query:   112 XXXXXXXXXLRQAWGSLDALIGRLRAAFEENGGKPEANPFGARAVRLYLREVRDVQSKAR 171
                      LRQAWGSLDALIGRLRAAFEENGGKPE NPFGARAVRLYLREVRD+QSKAR
Sbjct:   114 NPPAPCPCPLRQAWGSLDALIGRLRAAFEENGGKPETNPFGARAVRLYLREVRDMQSKAR 173

Query:   172 GISYEKKKRKR 182
             G+SYEKKKRKR
Sbjct:   174 GVSYEKKKRKR 184

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0007389 "pattern specification process" evidence=RCA

GO:0009855 "determination of bilateral symmetry" evidence=RCA

GO:0009944 "polarity specification of adaxial/abaxial axis" evidence=RCA

GO:0010014 "meristem initiation" evidence=RCA

GO:0010075 "regulation of meristem growth" evidence=RCA

GO:0048438 "floral whorl development" evidence=RCA

GO:0048439 "flower morphogenesis" evidence=RCA

TAIR|locus:2007382 LSH6 "AT1G07090" [Arabidopsis thaliana (taxid:3702)]

 Score = 545 (196.9 bits), Expect = 1.3e-52, P = 1.3e-52
 Identities = 99/131 (75%), Positives = 114/131 (87%)

Query:    52 RYENQKRRDWNTFGQYLKNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHX 111
             RYE+QKRRDWNTF QYLKNH+PPL+LSRCSGAHV+EFL+YLDQFGKTKVH   CP++GH 
Sbjct:    31 RYESQKRRDWNTFLQYLKNHKPPLALSRCSGAHVIEFLKYLDQFGKTKVHVAACPYFGHQ 90

Query:   112 XXXXXXXXXLRQAWGSLDALIGRLRAAFEENGGKPEANPFGARAVRLYLREVRDVQSKAR 171
                      L+QAWGSLDALIGRLRAA+EENGG+P++NPF ARAVR+YLREVR+ Q+KAR
Sbjct:    91 QPPSPCSCPLKQAWGSLDALIGRLRAAYEENGGRPDSNPFAARAVRIYLREVRESQAKAR 150

Query:   172 GISYEKKKRKR 182
             GI YEKKKRKR
Sbjct:   151 GIPYEKKKRKR 161

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2147494 LSH1 "AT5G28490" [Arabidopsis thaliana (taxid:3702)]

 Score = 527 (190.6 bits), Expect = 1.1e-50, P = 1.1e-50
 Identities = 100/130 (76%), Positives = 110/130 (84%)

Query:    52 RYENQKRRDWNTFGQYLKNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHX 111
             RYENQKRRDWNTF QYL+NHRPPLSL  CSGAHVLEFLRYLDQFGKTKVH   C F+G  
Sbjct:    25 RYENQKRRDWNTFCQYLRNHRPPLSLPSCSGAHVLEFLRYLDQFGKTKVHHQNCAFFGLP 84

Query:   112 XXXXXXXXXLRQAWGSLDALIGRLRAAFEENGGKPEANPFGARAVRLYLREVRDVQSKAR 171
                      LRQAWGSLDALIGRLRAA+EENGG PEANPFG+RAVRL+LREVRD Q+KAR
Sbjct:    85 NPPAPCPCPLRQAWGSLDALIGRLRAAYEENGGPPEANPFGSRAVRLFLREVRDFQAKAR 144

Query:   172 GISYEKKKRK 181
             G+SYEKK+++
Sbjct:   145 GVSYEKKRKR 154

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0009416 "response to light stimulus" evidence=IMP

GO:0009637 "response to blue light" evidence=IGI

GO:0009826 "unidimensional cell growth" evidence=IMP

GO:0010114 "response to red light" evidence=IGI

GO:0010218 "response to far red light" evidence=IGI

TAIR|locus:2171263 LSH5 "AT5G58500" [Arabidopsis thaliana (taxid:3702)]

 Score = 517 (187.1 bits), Expect = 1.2e-49, P = 1.2e-49
 Identities = 97/132 (73%), Positives = 110/132 (83%)

Query:    52 RYENQKRRDWNTFGQYLKNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHX 111
             RYE+QKRRDWNTF QYL+NH+PPL+LSRCSGAHVLEFL+YLDQFGKTKVH   CPF+G  
Sbjct:    19 RYESQKRRDWNTFLQYLRNHKPPLNLSRCSGAHVLEFLKYLDQFGKTKVHATACPFFGQP 78

Query:   112 XXXXXXXXXLRQAWGSLDALIGRLRAAFEE-NGGKPEANPFGARAVRLYLREVRDVQSKA 170
                      L+QAWGSLDALIGRLRAAFEE  GG PE+NPF A+AVR+YL+EVR  Q+KA
Sbjct:    79 NPPSQCTCPLKQAWGSLDALIGRLRAAFEEIGGGLPESNPFAAKAVRIYLKEVRQTQAKA 138

Query:   171 RGISYEKKKRKR 182
             RGI Y+KKKRKR
Sbjct:   139 RGIPYDKKKRKR 150

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2100850 LSH2 "AT3G04510" [Arabidopsis thaliana (taxid:3702)]

 Score = 504 (182.5 bits), Expect = 2.9e-48, P = 2.9e-48
 Identities = 93/130 (71%), Positives = 109/130 (83%)

Query:    52 RYENQKRRDWNTFGQYLKNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHX 111
             RYENQKRRDWNTF QYL+NH PPLSL+ CSGAHVL+FLRYLDQFGKTKVH   C F+G  
Sbjct:    33 RYENQKRRDWNTFCQYLRNHHPPLSLASCSGAHVLDFLRYLDQFGKTKVHHQNCAFFGLP 92

Query:   112 XXXXXXXXXLRQAWGSLDALIGRLRAAFEENGGKPEANPFGARAVRLYLREVRDVQSKAR 171
                      LRQAWGSLDALIGRLRAA+EENGG PE +PFG+R+VR++LREVRD Q+K+R
Sbjct:    93 NPPAPCPCPLRQAWGSLDALIGRLRAAYEENGGAPETSPFGSRSVRIFLREVRDFQAKSR 152

Query:   172 GISYEKKKRK 181
             G+SYEKK+++
Sbjct:   153 GVSYEKKRKR 162

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2041514 LSH10 "AT2G42610" [Arabidopsis thaliana (taxid:3702)]

 Score = 500 (181.1 bits), Expect = 7.7e-48, P = 7.7e-48
 Identities = 93/131 (70%), Positives = 106/131 (80%)

Query:    52 RYENQKRRDWNTFGQYLKNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHX 111
             RYE+QKRRDWNTFGQYLKN RPP+ +S CS  HVL+FLRYLDQFGKTKVH P C FYG  
Sbjct:    25 RYESQKRRDWNTFGQYLKNQRPPVPMSHCSCNHVLDFLRYLDQFGKTKVHVPGCMFYGQP 84

Query:   112 XXXXXXXXXLRQAWGSLDALIGRLRAAFEENGGKPEANPFGARAVRLYLREVRDVQSKAR 171
                      LRQAWGSLDALIGRLRAA+EENGG PE NPF + A+R+YLREVR+ Q+KAR
Sbjct:    85 EPPAPCTCPLRQAWGSLDALIGRLRAAYEENGGPPETNPFASGAIRVYLREVRECQAKAR 144

Query:   172 GISYEKKKRKR 182
             GI Y+KKK+K+
Sbjct:   145 GIPYKKKKKKK 155

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:505006228 LSH7 "AT1G78815" [Arabidopsis thaliana (taxid:3702)]

 Score = 452 (164.2 bits), Expect = 9.3e-43, P = 9.3e-43
 Identities = 81/131 (61%), Positives = 102/131 (77%)

Query:    52 RYENQKRRDWNTFGQYLKNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHX 111
             RYE+QKRRDWNTF QYL+N +PP+ +S+C   H+L+FL+YLDQFGKTKVH   C F+G  
Sbjct:    40 RYESQKRRDWNTFCQYLRNQQPPVHISQCGSNHILDFLQYLDQFGKTKVHIHGCVFFGQV 99

Query:   112 XXXXXXXXXLRQAWGSLDALIGRLRAAFEENGGKPEANPFGARAVRLYLREVRDVQSKAR 171
                      L+QAWGSLDALIGRLRAAFEENGG PE NPF    +R++LREVRD Q+KAR
Sbjct:   100 EPAGQCNCPLKQAWGSLDALIGRLRAAFEENGGLPERNPFAGGGIRVFLREVRDSQAKAR 159

Query:   172 GISYEKKKRKR 182
             G+ Y+K+K+++
Sbjct:   160 GVPYKKRKKRK 170

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009691 "cytokinin biosynthetic process" evidence=RCA

TAIR|locus:2124067 LSH9 "AT4G18610" [Arabidopsis thaliana (taxid:3702)]

 Score = 426 (155.0 bits), Expect = 5.3e-40, P = 5.3e-40
 Identities = 82/132 (62%), Positives = 99/132 (75%)

Query:    52 RYENQKRRDWNTFGQYLKNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHX 111
             RYE+QKRRDWNTF QYLK+  PPL +S+    HVL FLRYLDQFGKTKVH   C F+G  
Sbjct:    37 RYESQKRRDWNTFVQYLKSQNPPLMMSQFDYTHVLSFLRYLDQFGKTKVHHQACVFFGQP 96

Query:   112 XXXXXXXXXLRQAWGSLDALIGRLRAAFEENGG-KPEANPFGARAVRLYLREVRDVQSKA 170
                      L+QAWGSLDALIGRLRAA+EE+GG  P+ NPF   ++R++LREVR+ Q+KA
Sbjct:    97 DPPGPCTCPLKQAWGSLDALIGRLRAAYEEHGGGSPDTNPFANGSIRVHLREVRESQAKA 156

Query:   171 RGISYEKKKRKR 182
             RGI Y KKKR++
Sbjct:   157 RGIPYRKKKRRK 168

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009691 "cytokinin biosynthetic process" evidence=RCA

GO:0010413 "glucuronoxylan metabolic process" evidence=RCA

GO:0045492 "xylan biosynthetic process" evidence=RCA

TAIR|locus:2015591 LSH8 "AT1G16910" [Arabidopsis thaliana (taxid:3702)]

 Score = 392 (143.0 bits), Expect = 2.1e-36, P = 2.1e-36
 Identities = 75/129 (58%), Positives = 90/129 (69%)

Query:    52 RYENQKRRDWNTFGQYLKNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHX 111
             RYE+QK RDWNTF QYL    PP+ +  C   H+L+FL+  DQFGKTKVH   C F+G  
Sbjct:    23 RYESQKSRDWNTFCQYLMTKMPPVHVWECESNHILDFLQSRDQFGKTKVHIQGCVFFGQK 82

Query:   112 XXXXXXXXXLRQAWGSLDALIGRLRAAFEENGGKPEANPFGARAVRLYLREVRDVQSKAR 171
                      L+QAWGSLDALIGRLRAA+EENGG  E NPF    +R++LREVR  Q+KAR
Sbjct:    83 EPPGECNCPLKQAWGSLDALIGRLRAAYEENGGLTEKNPFARGGIRIFLREVRGSQAKAR 142

Query:   172 GISYEKKKR 180
             G+ Y+KKKR
Sbjct:   143 GVLYKKKKR 151


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.319   0.132   0.396    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      204       154   0.00088  105 3  11 22  0.48    31
                                                     30  0.41    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  10
  No. of states in DFA:  598 (64 KB)
  Total size of DFA:  150 KB (2090 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  14.21u 0.10s 14.31t   Elapsed:  00:00:01
  Total cpu time:  14.21u 0.10s 14.31t   Elapsed:  00:00:01
  Start:  Mon May 20 17:41:44 2013   End:  Mon May 20 17:41:45 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	204
pfam04852	133	pfam04852, DUF640, Protein of unknown function (DU	1e-74

>gnl|CDD|191112 pfam04852, DUF640, Protein of unknown function (DUF640)

 Score =  220 bits (563), Expect = 1e-74
 Identities = 98/129 (75%), Positives = 110/129 (85%)

Query: 37  PPTPSSAGAATSSSSRYENQKRRDWNTFGQYLKNHRPPLSLSRCSGAHVLEFLRYLDQFG 96
             +  S+ +   + SRYE+QKRRDWNTF QYL+N RPPL+LS+CSG HVL+FLRYLDQFG
Sbjct: 4   LTSECSSRSPPPALSRYESQKRRDWNTFCQYLRNQRPPLNLSKCSGNHVLDFLRYLDQFG 63

Query: 97  KTKVHTPICPFYGHPNPPAPCPCPLRQAWGSLDALIGRLRAAFEENGGKPEANPFGARAV 156
           KTKVH   C F+GHP+PPAPCPCPLRQAWGSLDALIGRLRAAFEE+GG PE NPF ARAV
Sbjct: 64  KTKVHGQACGFFGHPSPPAPCPCPLRQAWGSLDALIGRLRAAFEEHGGHPEENPFAARAV 123

Query: 157 RLYLREVRD 165
           RLYLREVRD
Sbjct: 124 RLYLREVRD 132

This family represents a conserved region found in plant proteins including Resistance protein-like protein. Length = 133

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	204
PF04852	132	DUF640: Protein of unknown function (DUF640); Inte	100.0
PF08821	107	CGGC: CGGC domain; InterPro: IPR014925 Proteins in	91.7
PF02899	84	Phage_int_SAM_1: Phage integrase, N-terminal SAM-l	90.1
cd00798	284	INT_XerDC XerD and XerC integrases, DNA breaking-r	87.66
cd00799	287	INT_Cre Cre recombinase, C-terminal catalytic doma	85.98
TIGR02225	291	recomb_XerD tyrosine recombinase XerD. The phage i	83.84
PRK00283	299	xerD site-specific tyrosine recombinase XerD; Revi	83.2

>PF04852 DUF640: Protein of unknown function (DUF640); InterPro: IPR006936 This conserved region is found in plant proteins including the resistance protein-like protein (O49468 from SWISSPROT)

Probab=100.00  E-value=6.5e-76  Score=471.83  Aligned_cols=122  Identities=85%  Similarity=1.501  Sum_probs=119.0

Q ss_pred             CCCCCCchHHHhhhhhhhHHHHHHHhcCCCCccccCcchhHHHHHHhhcccCcccccCCCCCCCCCCCCCCCCCCchhhh
Q 046561           45 AATSSSSRYENQKRRDWNTFGQYLKNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLRQA  124 (204)
Q Consensus        45 ~~~~~~SrYesQKRrdwntf~qyL~n~rPPlsL~~csg~hVleFLrylDqfGkTkVH~~~C~ffG~p~ppapC~CPlRQA  124 (204)
                      .+++.+||||+|||||||||+|||+||+|||+|++|+|+|||+||+|+|||||||||.++|+|||+|+||+||+||||||
T Consensus        11 ~~~~~~SrYesQKrrdwntf~qyL~n~rPP~~L~~csg~hVl~FL~~~d~~GkTkVh~~~C~~~g~~~~p~~C~CPlrqA   90 (132)
T PF04852_consen   11 SPQPAPSRYESQKRRDWNTFGQYLRNHRPPLSLSRCSGNHVLEFLRYLDQFGKTKVHGQGCPFFGHPSPPAPCPCPLRQA   90 (132)
T ss_pred             CCCCCCcccchhhhHHHHHHHHHHHccCCCcchhhcChHHHHHHHHHHhccCCeeecCCCCCCCCCCCCCCCCCCcHHHH
Confidence            34567899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cchhHHHHHHHHHHHHHhCCCCCCCccchhhHHHHHHHHhhH
Q 046561          125 WGSLDALIGRLRAAFEENGGKPEANPFGARAVRLYLREVRDV  166 (204)
Q Consensus       125 wGSLDALIGRLRAafEE~Gg~pE~NPF~araVRlYLReVRd~  166 (204)
                      ||||||||||||||||||||+||+|||+++|||+|||||||+
T Consensus        91 wGSlDalIGrLraafee~Gg~pe~NPf~~~~vr~yLr~vr~~  132 (132)
T PF04852_consen   91 WGSLDALIGRLRAAFEEHGGHPEANPFAARAVRLYLREVRDS  132 (132)
T ss_pred             hccHHHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHHhcC
Confidence            999999999999999999999999999999999999999985

>PF08821 CGGC: CGGC domain; InterPro: IPR014925 Proteins in this entry are a quite highly conserved sequence of CGGC in its central region

Probab=91.70  E-value=0.33  Score=37.79  Aligned_cols=67  Identities=22%  Similarity=0.545  Sum_probs=49.5

Q ss_pred             HHHHHHHhcCCCCccccCc---chhHHHHHHhhcccCcccccCCCCCCCCCCCCCCCCCCchhhhcchhHHHHHHHHHHH
Q 046561           63 TFGQYLKNHRPPLSLSRCS---GAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLRQAWGSLDALIGRLRAAF  139 (204)
Q Consensus        63 tf~qyL~n~rPPlsL~~cs---g~hVleFLrylDqfGkTkVH~~~C~ffG~p~ppapC~CPlRQAwGSLDALIGRLRAaf  139 (204)
                      .|.+|=.+..--+.+.+|.   +..|+..++.+-..|-..||...|.+.+.+.+    +||.      +|.|+-.|+++|
T Consensus        29 ~F~~y~~~~~elvgf~~CgGCpg~~~~~~~~~l~~~~~d~IHlssC~~~~~~~~----~CP~------~~~~~~~I~~~~   98 (107)
T PF08821_consen   29 AFARYDDEDVELVGFFTCGGCPGRKLVRRIKKLKKNGADVIHLSSCMVKGNPHG----PCPH------IDEIKKIIEEKF   98 (107)
T ss_pred             ccccCCCCCeEEEEEeeCCCCChhHHHHHHHHHHHCCCCEEEEcCCEecCCCCC----CCCC------HHHHHHHHHHHh
Confidence            3444433222233444554   68899999999999999999999999987653    6665      899999999888

The region has many conserved cysteines and histidines suggestive of a zinc binding function.

>PF02899 Phage_int_SAM_1: Phage integrase, N-terminal SAM-like domain; InterPro: IPR004107 Proteins containing this domain cleave DNA substrates by a series of staggered cuts, during which the protein becomes covalently linked to the DNA through a catalytic tyrosine residue at the carboxy end of the alignment [, ]

Probab=90.10  E-value=0.54  Score=31.78  Aligned_cols=40  Identities=28%  Similarity=0.465  Sum_probs=31.8

Q ss_pred             hhhhhhhHHHHHHHhcCCCCccccCcchhHHHHHHhhcccC
Q 046561           56 QKRRDWNTFGQYLKNHRPPLSLSRCSGAHVLEFLRYLDQFG   96 (204)
Q Consensus        56 QKRrdwntf~qyL~n~rPPlsL~~csg~hVleFLrylDqfG   96 (204)
                      .-+++++.|.+||.+ ....++..++..||.+|+.++-+.|
T Consensus        21 ~Y~~~l~~f~~~~~~-~~~~~~~~i~~~~v~~f~~~~~~~~   60 (84)
T PF02899_consen   21 SYRRDLRRFIRWLEE-HGIIDWEDITEEDVRDFLEYLAKEG   60 (84)
T ss_dssp             HHHHHHHHHHHHHHH-TTS-CGGG--HHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHhhhh-hhhhhhhhhhhHHHHHHHHHHHccC
Confidence            456789999999999 5667788899999999999998766

The phage integrase N-terminal SAM-like domain is almost always found with the signature that defines the phage integrase family (see IPR002104 from INTERPRO).; GO: 0003677 DNA binding, 0015074 DNA integration; PDB: 1Z1G_B 1Z19_A 1Z1B_A 2OXO_A 1P7D_B 3NRW_A 1A0P_A.

>cd00798 INT_XerDC XerD and XerC integrases, DNA breaking-rejoining enzymes, N- and C-terminal domains

Probab=87.66  E-value=2.4  Score=32.86  Aligned_cols=69  Identities=25%  Similarity=0.269  Sum_probs=48.3

Q ss_pred             hhhhhhhHHHHHHHhcCCCCccccCcchhHHHHHHhhcccCcccccCCCCCCCCCCCCCCCCCCchhhhcchhHHHHHHH
Q 046561           56 QKRRDWNTFGQYLKNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLRQAWGSLDALIGRL  135 (204)
Q Consensus        56 QKRrdwntf~qyL~n~rPPlsL~~csg~hVleFLrylDqfGkTkVH~~~C~ffG~p~ppapC~CPlRQAwGSLDALIGRL  135 (204)
                      +-+..|+.|.+|+....... +..-+..||.+|+.++.+.|                          ....++...++-|
T Consensus        21 ~~~~~~~~~~~~~~~~~~~~-~~~l~~~~i~~~~~~~~~~~--------------------------~~~~t~~~~~~~l   73 (284)
T cd00798          21 AYRRDLERFLEFLEERGILF-PADVTPDDIRRFLAELKDQG--------------------------LSARSIARKLSAL   73 (284)
T ss_pred             HHHHHHHHHHHHHHHcCCCc-hhhCCHHHHHHHHHHhhhcC--------------------------CCHHHHHHHHHHH
Confidence            44567899999998754433 56678899999999887644                          1335777788888


Q ss_pred             HHHHHHhC--CCCCCCcc
Q 046561          136 RAAFEENG--GKPEANPF  151 (204)
Q Consensus       136 RAafEE~G--g~pE~NPF  151 (204)
                      +++|.-..  +--+.||+
T Consensus        74 ~~~~~~~~~~~~~~~~p~   91 (284)
T cd00798          74 RSFFKFLLREGLILANPA   91 (284)
T ss_pred             HHHHHHHHHcCCccCChh
Confidence            88887322  33456777

XerD-like integrases are involved in the site-specific integration and excision of lysogenic bacteriophage genomes, transposition of conjugative transposons, termination of chromosomal replication, and stable plasmid inheritance. They share the same fold in their catalytic domain containing six conserved active site residues and the overall reaction mechanism with the DNA breaking-rejoining enzyme superfamily. In Escherichia coli, the Xer site-specific recombination system acts to convert dimeric chromosomes, which are formed by homologous recombination to monomers. Two related recombinases, XerC and XerD, bind cooperatively to a recombination site present in the E. coli chromosome. Each recombinase catalyzes the exchange of one pair of DNA strand in a reaction that proceeds through a Holliday junction intermediate. These enzymes can bridge two different and well-separated DNA sequen

>cd00799 INT_Cre Cre recombinase, C-terminal catalytic domain

Probab=85.98  E-value=7.4  Score=31.51  Aligned_cols=77  Identities=23%  Similarity=0.312  Sum_probs=52.6

Q ss_pred             hhhhhhhHHHHHHHhcCCCCccccCcchhHHHHHHhhcccCcccccCCCCCCCCCCCCCCCCCCchhhhcchhHHHHHHH
Q 046561           56 QKRRDWNTFGQYLKNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLRQAWGSLDALIGRL  135 (204)
Q Consensus        56 QKRrdwntf~qyL~n~rPPlsL~~csg~hVleFLrylDqfGkTkVH~~~C~ffG~p~ppapC~CPlRQAwGSLDALIGRL  135 (204)
                      .-..+++.|..|+..+.  +....-+..+|.+|+.||.+.                           .+..++-..++.|
T Consensus         6 ~y~~~l~~f~~~~~~~~--~~~~~~~~~~i~~~~~~l~~~---------------------------~s~~ti~~~~~~l   56 (287)
T cd00799           6 AYLSDWRRFAAWCQAHG--RTPLPASPETVTLYLTDLADS---------------------------LAPSTISRRLSAL   56 (287)
T ss_pred             HHHHHHHHHHHHHHhcC--CCCCCCCHHHHHHHHHHHHhc---------------------------cChHHHHHHHHHH
Confidence            44568889999998752  222234589999999988531                           1456888899999


Q ss_pred             HHHHHHhCCCCCCCccchhhHHHHHHHHh
Q 046561          136 RAAFEENGGKPEANPFGARAVRLYLREVR  164 (204)
Q Consensus       136 RAafEE~Gg~pE~NPF~araVRlYLReVR  164 (204)
                      +.+|+..+.   .||+....++.-|+.++
T Consensus        57 ~~~~~~~~~---~~p~~~~~~~~~~~~~~   82 (287)
T cd00799          57 SQLHRRSGL---PSPADSPLVRLVLRGIR   82 (287)
T ss_pred             HHHHHHcCC---CCCccCHHHHHHHHHHH
Confidence            999985433   58876555555555554

Cre-like recombinases belong to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their catalytic domain and the overall reaction mechanism. The bacteriophage P1 Cre recombinase maintains the circular phage replicon in a monomeric state by catalyzing a site-specific recombination between two loxP sites. The catalytic core domain of Cre recombinase is linked to a more divergent helical N-terminal domain, which interacts primarily with the DNA major groove proximal to the crossover region.

>TIGR02225 recomb_XerD tyrosine recombinase XerD

Probab=83.84  E-value=4.5  Score=31.70  Aligned_cols=70  Identities=23%  Similarity=0.393  Sum_probs=47.7

Q ss_pred             HhhhhhhhHHHHHHHhcCCCCccccCcchhHHHHHHhhcccCcccccCCCCCCCCCCCCCCCCCCchhhhcchhHHHHHH
Q 046561           55 NQKRRDWNTFGQYLKNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLRQAWGSLDALIGR  134 (204)
Q Consensus        55 sQKRrdwntf~qyL~n~rPPlsL~~csg~hVleFLrylDqfGkTkVH~~~C~ffG~p~ppapC~CPlRQAwGSLDALIGR  134 (204)
                      .+-+..++.|..|+....  ..+..-+..||.+|+.++.+.|                          .+.-++...+..
T Consensus        19 ~~~~~~~~~~~~~~~~~~--~~~~~it~~~i~~~~~~~~~~~--------------------------~~~~t~~~~~~~   70 (291)
T TIGR02225        19 EAYRRDLEKFLEFLEERG--IDLEEVDRGDIVDFLAELKEAG--------------------------LSARSIARALSA   70 (291)
T ss_pred             HHHHHHHHHHHHHHHhcC--CChHHCCHHHHHHHHHHhhcCC--------------------------CCHhHHHHHHHH
Confidence            445567888999998542  2455567899999999887644                          122367888999


Q ss_pred             HHHHHHHh--CCCCCCCccc
Q 046561          135 LRAAFEEN--GGKPEANPFG  152 (204)
Q Consensus       135 LRAafEE~--Gg~pE~NPF~  152 (204)
                      |+++|+-.  -+--+.|||.
T Consensus        71 l~~~~~~a~~~~~~~~np~~   90 (291)
T TIGR02225        71 LRSFYRFLLREGIREDDPSA   90 (291)
T ss_pred             HHHHHHHHHhcccccCCchh
Confidence            99988732  2334568863

The phage integrase family describes a number of recombinases with tyrosine active sites that transiently bind covalently to DNA. Many are associated with mobile DNA elements, including phage, transposons, and phase variation loci. This model represents XerD, one of two closely related chromosomal proteins along with XerC (TIGR02224). XerC and XerD are site-specific recombinases which help resolve chromosome dimers to monomers for cell division after DNA replication. In species with a large chromosome and with homologs of XerD on other replicons, the chomosomal copy was preferred for building this model. This model does not detect all XerD, as some apparent XerD examples score below the trusted and noise cutoff scores. XerC and XerD interact with cell division protein FtsK.

>PRK00283 xerD site-specific tyrosine recombinase XerD; Reviewed

Probab=83.20  E-value=3.6  Score=32.79  Aligned_cols=68  Identities=26%  Similarity=0.289  Sum_probs=47.6

Q ss_pred             hhhhhhHHHHHHHhcCCCCccccCcchhHHHHHHhhcccCcccccCCCCCCCCCCCCCCCCCCchhhhcchhHHHHHHHH
Q 046561           57 KRRDWNTFGQYLKNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLRQAWGSLDALIGRLR  136 (204)
Q Consensus        57 KRrdwntf~qyL~n~rPPlsL~~csg~hVleFLrylDqfGkTkVH~~~C~ffG~p~ppapC~CPlRQAwGSLDALIGRLR  136 (204)
                      -+.+|+.|..||..+.-  .+...+..||.+|+.++.+.|                          .+-.++...+..|+
T Consensus        30 ~~~~~~~~~~~~~~~~~--~~~~l~~~~i~~~~~~~~~~~--------------------------~~~~t~~~~~~~l~   81 (299)
T PRK00283         30 YRRDLELFAEWLAARGL--SLAEATRDDLQAFLAELAEGG--------------------------YKATSSARRLSALR   81 (299)
T ss_pred             HHHHHHHHHHHHHhcCC--ChHHCCHHHHHHHHHHHHhCC--------------------------CCHHHHHHHHHHHH
Confidence            45688899999986532  566778999999999885432                          23457778888888


Q ss_pred             HHHHHhC--CCCCCCccc
Q 046561          137 AAFEENG--GKPEANPFG  152 (204)
Q Consensus       137 AafEE~G--g~pE~NPF~  152 (204)
                      ++|+-..  +--..|||.
T Consensus        82 ~~~~~a~~~~~i~~np~~   99 (299)
T PRK00283         82 RFFQFLLREGLREDDPSA   99 (299)
T ss_pred             HHHHHHHHcCCcccCchh
Confidence            8887331  234468863

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	204
1xo0_A	324	Recombinase CRE; CRE recombinase, holliday junctio	91.97
3nrw_A	117	Phage integrase/site-specific recombinase; alpha-h	85.48
1a0p_A	290	Site-specific recombinase XERD; DNA binding, DNA r	81.94

>1xo0_A Recombinase CRE; CRE recombinase, holliday junction, recombination,complex (recombinase/DNA), hydrolase, ligase/DNA complex; 2.00A {Enterobacteria phage P1} SCOP: a.60.9.1 d.163.1.1 PDB: 3crx_A* 1kbu_A 1ma7_A 1q3u_A* 1q3v_A* 3mgv_A* 1ouq_A* 1nzb_A* 2crx_A* 1xns_A 5crx_A* 1f44_A* 2hof_A 2hoi_A 4crx_A* 1drg_A 3c29_A* 3c28_A 1crx_A* 1pvr_A ...

Probab=91.97  E-value=0.43  Score=36.59  Aligned_cols=71  Identities=15%  Similarity=0.193  Sum_probs=53.0

Q ss_pred             HhhhhhhhHHHHHHHhcCCCCccccCcchhHHHHHHhhcccCcccccCCCCCCCCCCCCCCCCCCchhhhcchhHHHHHH
Q 046561           55 NQKRRDWNTFGQYLKNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLRQAWGSLDALIGR  134 (204)
Q Consensus        55 sQKRrdwntf~qyL~n~rPPlsL~~csg~hVleFLrylDqfGkTkVH~~~C~ffG~p~ppapC~CPlRQAwGSLDALIGR  134 (204)
                      ..-+++|+.|..|+....  +.+...+..||.+|+.++-..|                          .+..++...+..
T Consensus        24 ~~y~~~l~~~~~~~~~~~--~~~~~i~~~~i~~~~~~l~~~~--------------------------~s~~t~~~~~~~   75 (324)
T 1xo0_A           24 KMLLSVCRSWAAWCKLNN--RKWFPAEPEDVRDYLLYLQARG--------------------------LAVKTIQQHLGQ   75 (324)
T ss_dssp             HHHHHHHHHHHHHHHHHT--CCCSSCCHHHHHHHHHHHHHTT--------------------------CCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcC--CCCCCCCHHHHHHHHHHHHhcC--------------------------cCHHHHHHHHHH
Confidence            345678899999998763  2456678999999999875322                          255788999999


Q ss_pred             HHHHHHHhCCC-CCCCccch
Q 046561          135 LRAAFEENGGK-PEANPFGA  153 (204)
Q Consensus       135 LRAafEE~Gg~-pE~NPF~a  153 (204)
                      |++.|+-.+.. +..||+..
T Consensus        76 l~~~~~~~~~~~~~~np~~~   95 (324)
T 1xo0_A           76 LNMLHRRSGLPRPSDSNAVS   95 (324)
T ss_dssp             HHHHHHHHTSCCGGGSHHHH
T ss_pred             HHHHHHHcCCCCCCcCHHHH
Confidence            99999988653 35688754

>3nrw_A Phage integrase/site-specific recombinase; alpha-helical domain, structural genomics, PSI-2, protein ST initiative; 1.70A {Haloarcula marismortui}

Probab=85.48  E-value=2.9  Score=28.86  Aligned_cols=69  Identities=10%  Similarity=0.054  Sum_probs=47.3

Q ss_pred             hhhhhhHHHHHHHhcCCCCccccCcchhHHHHHHhhcccCcccccCCCCCCCCCCCCCCCCCCchhhhcchhHHHHHHHH
Q 046561           57 KRRDWNTFGQYLKNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLRQAWGSLDALIGRLR  136 (204)
Q Consensus        57 KRrdwntf~qyL~n~rPPlsL~~csg~hVleFLrylDqfGkTkVH~~~C~ffG~p~ppapC~CPlRQAwGSLDALIGRLR  136 (204)
                      -+++++.|..||.... -..+...+..||.+|+.|+-..|                          .+..|+-..+.-||
T Consensus        32 Y~~~l~~f~~~l~~~~-~~~l~~it~~~i~~y~~~l~~~~--------------------------~s~~Ti~~~ls~lr   84 (117)
T 3nrw_A           32 FRYRLKHFVEWAEERD-ITAMRELTGWKLDEYETFRRGSD--------------------------VSPATLNGEMQTLK   84 (117)
T ss_dssp             HHHHHHHHHHHHHHTT-CCSGGGCCHHHHHHHHHHHHTSS--------------------------CCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcC-CCChHHCCHHHHHHHHHHHHhCC--------------------------CCHHHHHHHHHHHH
Confidence            3568888899987632 12566778899999998874311                          24567788888888


Q ss_pred             HHHHHh--CCCCCCCccc
Q 046561          137 AAFEEN--GGKPEANPFG  152 (204)
Q Consensus       137 AafEE~--Gg~pE~NPF~  152 (204)
                      +.|.-.  -|--+.||+.
T Consensus        85 ~f~~~l~~~g~i~~nP~~  102 (117)
T 3nrw_A           85 NWLEYLARIDVVDEDLPE  102 (117)
T ss_dssp             HHHHHHHHTTSSCTTSGG
T ss_pred             HHHHHHHHcCCcccCHHH
Confidence            888743  2445688874

>1a0p_A Site-specific recombinase XERD; DNA binding, DNA recombination; 2.50A {Escherichia coli} SCOP: a.60.9.1 d.163.1.1

Probab=81.94  E-value=3.8  Score=30.88  Aligned_cols=70  Identities=20%  Similarity=0.174  Sum_probs=48.1

Q ss_pred             HhhhhhhhHHHHHHHhcCCCCccccCcchhHHHHHHhhcccCcccccCCCCCCCCCCCCCCCCCCchhhhcchhHHHHHH
Q 046561           55 NQKRRDWNTFGQYLKNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLRQAWGSLDALIGR  134 (204)
Q Consensus        55 sQKRrdwntf~qyL~n~rPPlsL~~csg~hVleFLrylDqfGkTkVH~~~C~ffG~p~ppapC~CPlRQAwGSLDALIGR  134 (204)
                      ..-++.++.|..|+...  .+.+...+..||.+|+.++-..                          ..+..++...+.-
T Consensus        25 ~~y~~~l~~~~~~~~~~--~~~~~~i~~~~i~~~~~~l~~~--------------------------~~s~~t~~~~~~~   76 (290)
T 1a0p_A           25 NAYRRDLSMMVEWLHHR--GLTLATAQSDDLQALLAERLEG--------------------------GYKATSSARLLSA   76 (290)
T ss_dssp             HHHHHHHHHHHHHHHHT--SCCTTTCCHHHHHHHHHSCC---------------------------------CHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhc--CCChhhCCHHHHHHHHHHHHhc--------------------------CCCHHHHHHHHHH
Confidence            34456788899999887  3467778899999999876421                          1245678888999


Q ss_pred             HHHHHHHhC--CCCCCCccc
Q 046561          135 LRAAFEENG--GKPEANPFG  152 (204)
Q Consensus       135 LRAafEE~G--g~pE~NPF~  152 (204)
                      |+++|+..-  +..+.|||.
T Consensus        77 l~~~~~~~~~~~~i~~np~~   96 (290)
T 1a0p_A           77 VRRLFQYLYREKFREDDPSA   96 (290)
T ss_dssp             HHHHHHHHHHTTSSSSCTTS
T ss_pred             HHHHHHHHHhCCCccCChhh
Confidence            999988542  345678985

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	204
d1f44a1	110	Cre recombinase {Bacteriophage P1 [TaxId: 10678]}	97.72

>d1f44a1 a.60.9.1 (A:20-129) Cre recombinase {Bacteriophage P1 [TaxId: 10678]}

class: All alpha proteins
fold: SAM domain-like
superfamily: lambda integrase-like, N-terminal domain
family: lambda integrase-like, N-terminal domain
domain: Cre recombinase
species: Bacteriophage P1 [TaxId: 10678]

Probab=97.72  E-value=9.1e-05  Score=52.44  Aligned_cols=81  Identities=20%  Similarity=0.294  Sum_probs=66.4

Q ss_pred             hhhhhHHHHHHHhcCCCCccccCcchhHHHHHHhhcccCcccccCCCCCCCCCCCCCCCCCCchhhhcchhHHHHHHHHH
Q 046561           58 RRDWNTFGQYLKNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLRQAWGSLDALIGRLRA  137 (204)
Q Consensus        58 Rrdwntf~qyL~n~rPPlsL~~csg~hVleFLrylDqfGkTkVH~~~C~ffG~p~ppapC~CPlRQAwGSLDALIGRLRA  137 (204)
                      ++||+.|.+|+.++.-  +...++..+|.+||.++-.-|                          .+..|+.--|.-||.
T Consensus        27 ~~dl~~f~~w~~~~~~--~~l~~~~~~v~~yl~~l~~~g--------------------------~s~sTi~R~lsair~   78 (110)
T d1f44a1          27 LSVCRSWAAWCKLNNR--KWFPAEPEDVRDYLLYLQARG--------------------------LAVKTIQQHLGQLNM   78 (110)
T ss_dssp             HHHHHHHHHHHHHTTC--CTTTTCHHHHHHHHHHHHHTT--------------------------CCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhcc--cccchhhhHHHHHHHHHHhcC--------------------------CCccHHHHHHHHHHH
Confidence            6899999999998864  455789999999999885433                          355689999999999


Q ss_pred             HHHHhCCCCCCCccchhhHHHHHHHHhhHHHh
Q 046561          138 AFEENGGKPEANPFGARAVRLYLREVRDVQSK  169 (204)
Q Consensus       138 afEE~Gg~pE~NPF~araVRlYLReVRd~QAk  169 (204)
                      .|...|-.   +|+.+..|++.|+-+|-..++
T Consensus        79 f~r~~g~~---~p~~~~~V~~~l~~i~R~~~~  107 (110)
T d1f44a1          79 LHRRSGLP---RPSDSNAVSLVMRRIRKENVD  107 (110)
T ss_dssp             HHHHTTCC---CGGGSHHHHHHHHHHHHHHHH
T ss_pred             HHHHcCCC---CCcCCHHHHHHHHHccccccC
Confidence            99988753   799999999999988876554