Citrus Sinensis ID: 046574

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100----
Protein Sequence
MKTVGEKSECPHSLLLMRKAFKGTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEFNAPLNKYNRETFYVSDPVVGYTDYPFLDTSSYVTKKKH
Secondary Structure (PSIPRED)
cccccccccccHHHHHHHHHccccEEEcccccHHHHHHHHHcccccEEEEcccccccccHHHHHHHcccccccccccccccccccccccccccccHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccccccccccccHHHHHcccccEEEEEccccHHHHHHHHHcccccEEEEcHHHHHcccHHHHHHHccccccccHHHccccccEccccccccccHHHHHHcccc
Coil and Loop (DISEMBL)
mktvgeksecphSLLLMRKAFKGTFlvaggydredgnkAIAEGRADLVVYGRfflanpdlprrfefnaplnkynretfyvsdpvvgytdypfldtssyvtkkkh
Flexible Loop (DISEMBL)
mktvgeksecphSLLLMRKAFKGTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEFNAPLNKYNRETFYVSDPVVGYTdypfldtssyvtkkkh
Low Complexity Region (SEG)
MKTVGEKSECPHSLLLMRKAFKGTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEFNAPLNKYNRETFYVSDPVVGYTDYPFLDTSSYVTKKKH
Disordered region (IsUnstruct)
************SLLLMRKAFKGTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEFNAPLNKYNRETFYVSDPVVGYTDYPFLDTSSY******
Disordered Region (DISOPRED)
********ECPHSLLLMRKAFKGTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEFNAPLNKYNRETFYVSDPVVGYTDYPF************
Disordered Region (DISEMBL)
*********CPHSLLLMRKAFKGTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEFNAPLNKYNRETFYVSDPVVGYTDYPFLDTSSYVTKKKH
Disordered Region (DISPRO)
********ECPHSLLLMRKAFKGTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEFNAPLNKYNRETFYVSDPVVGYTDYPFLDTSSY******
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKTVGEKSECPHSLLLMRKAFKGTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEFNAPLNKYNRETFYVSDPVVGYTDYPFLDTSSYVTKKKH
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	104	2.2.26 [Sep-21-2011]
Q9XG54	376	12-oxophytodienoate reduc	N/A	no	0.913	0.252	0.757	2e-40
Q8LAH7	372	12-oxophytodienoate reduc	yes	no	0.932	0.260	0.701	2e-38
Q8GYB8	374	12-oxophytodienoate reduc	no	no	0.932	0.259	0.701	6e-38
B9FSC8	367	Putative 12-oxophytodieno	yes	no	0.894	0.253	0.720	5e-36
Q69TH8	380	Putative 12-oxophytodieno	yes	no	0.903	0.247	0.702	2e-34
Q0E0C6	406	Putative 12-oxophytodieno	no	no	0.865	0.221	0.677	6e-34
Q69TI0	374	Putative 12-oxophytodieno	no	no	0.903	0.251	0.670	1e-33
Q69TH4	376	Putative 12-oxophytodieno	no	no	0.903	0.25	0.670	3e-33
Q84QK0	380	12-oxophytodienoate reduc	no	no	0.903	0.247	0.659	4e-33
Q69TI2	391	Putative 12-oxophytodieno	no	no	0.894	0.237	0.666	1e-32

>sp|Q9XG54|OPR1_SOLLC 12-oxophytodienoate reductase 1 OS=Solanum lycopersicum GN=OPR1 PE=1 SV=1

 Score =  163 bits (413), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 72/95 (75%), Positives = 83/95 (87%)

Query: 1   MKTVGEKSECPHSLLLMRKAFKGTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANPDL 60
           MKT  EK EC  SL+ MRKA+KGTF+VAGGYDREDGN+A+ E RADLV YGR F++NPDL
Sbjct: 280 MKTAWEKIECTESLVPMRKAYKGTFIVAGGYDREDGNRALIEDRADLVAYGRLFISNPDL 339

Query: 61  PRRFEFNAPLNKYNRETFYVSDPVVGYTDYPFLDT 95
           P+RFE NAPLNKYNR+TFY SDP+VGYTDYPFL+T
Sbjct: 340 PKRFELNAPLNKYNRDTFYTSDPIVGYTDYPFLET 374

Specifically cleaves olefinic bonds in alpha,beta-unsaturated carbonyls and may be involved in detoxification or modification of these reactive compounds. May be involved in the biosynthesis or metabolism of oxylipin signaling molecules. In vitro, reduces 9R,13R-12-oxophyodienoic acid (9R,13R-OPDA) to 9R,13R-OPC-8:0, but not 9S,13S-OPDA, the natural precursor of jasmonic acid. Also reduces N-ethylmaleimide and maleic acid.
Solanum lycopersicum (taxid: 4081)
EC: 1EC: .EC: 3EC: .EC: 1EC: .EC: 4EC: 2

>sp|Q8LAH7|OPR1_ARATH 12-oxophytodienoate reductase 1 OS=Arabidopsis thaliana GN=OPR1 PE=1 SV=2

 Score =  157 bits (396), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 68/97 (70%), Positives = 86/97 (88%)

Query: 1   MKTVGEKSECPHSLLLMRKAFKGTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANPDL 60
           MKT+GE   CPH+L+ MRKAFKGTF+ AGG+ REDGN+A+++GR DLV YGR+FLANPDL
Sbjct: 276 MKTMGEVHACPHTLMPMRKAFKGTFISAGGFTREDGNEAVSKGRTDLVAYGRWFLANPDL 335

Query: 61  PRRFEFNAPLNKYNRETFYVSDPVVGYTDYPFLDTSS 97
           P+RF+ +APLNKY+R TFY SDPVVGYTDYPFL++++
Sbjct: 336 PKRFQVDAPLNKYDRPTFYTSDPVVGYTDYPFLESTA 372

Specifically cleaves olefinic bonds in alpha,beta-unsaturated carbonyls and may be involved in detoxification or modification of these reactive compounds. May be involved in the biosynthesis or metabolism of oxylipin signaling molecules. In vitro, reduces 9R,13R-12-oxophyodienoic acid (9R,13R-OPDA) to 9R,13R-OPC-8:0, but only poorly 9S,13S-OPDA, the natural precursor of jasmonic acid. Can detoxify the explosive 2,4,6-trinitrotoluene (TNT) in vitro and in vivo by catalyzing its nitroreduction to form hydroxylamino-dinitrotoluene (HADNT).

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 4

EC: 2

>sp|Q8GYB8|OPR2_ARATH 12-oxophytodienoate reductase 2 OS=Arabidopsis thaliana GN=OPR2 PE=2 SV=2

 Score =  155 bits (392), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 68/97 (70%), Positives = 85/97 (87%)

Query: 1   MKTVGEKSECPHSLLLMRKAFKGTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANPDL 60
           MKTVGE + C H+L+ MR+AFKGTF+ AGG+ REDGN+A+A+GR DLV YGR+FLANPDL
Sbjct: 278 MKTVGEIAACSHTLMPMREAFKGTFISAGGFTREDGNEAVAKGRTDLVAYGRWFLANPDL 337

Query: 61  PRRFEFNAPLNKYNRETFYVSDPVVGYTDYPFLDTSS 97
           P+RF+ +APLNKYNR TFY SDPVVGYTDYP L++++
Sbjct: 338 PKRFQLDAPLNKYNRSTFYTSDPVVGYTDYPSLESTA 374

Specifically cleaves olefinic bonds in alpha,beta-unsaturated carbonyls and may be involved in detoxification or modification of these reactive compounds. May be involved in the biosynthesis or metabolism of oxylipin signaling molecules. In vitro, reduces 9R,13R-12-oxophyodienoic acid (9R,13R-OPDA) to 9R,13R-OPC-8:0, but only poorly 9S,13S-OPDA, the natural precursor of jasmonic acid. Can detoxify the explosive 2,4,6-trinitrotoluene (TNT) in vitro and in vivo by catalyzing its nitroreduction to form hydroxylamino-dinitrotoluene (HADNT).

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 4

EC: 2

>sp|B9FSC8|OPR11_ORYSJ Putative 12-oxophytodienoate reductase 11 OS=Oryza sativa subsp. japonica GN=OPR11 PE=2 SV=1

 Score =  149 bits (376), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 67/93 (72%), Positives = 78/93 (83%)

Query: 1   MKTVGEKSECPHSLLLMRKAFKGTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANPDL 60
           M  +GEK E PHSL  +R AFKGTF+ AGGY++EDGNKA++ G  DLV YGR FL+NPDL
Sbjct: 271 MVKLGEKFETPHSLRPIRDAFKGTFIAAGGYNKEDGNKAVSTGYTDLVAYGRLFLSNPDL 330

Query: 61  PRRFEFNAPLNKYNRETFYVSDPVVGYTDYPFL 93
           P RFE +APLNKYNRETFY+SDPV+GYTDYPFL
Sbjct: 331 PERFEIDAPLNKYNRETFYISDPVIGYTDYPFL 363

Putative oxophytodienoate reductase that may be involved in the biosynthesis or metabolism of oxylipin signaling molecules.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: -

>sp|Q69TH8|OPR4_ORYSJ Putative 12-oxophytodienoate reductase 4 OS=Oryza sativa subsp. japonica GN=OPR4 PE=2 SV=1

 Score =  144 bits (362), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 66/94 (70%), Positives = 73/94 (77%)

Query: 1   MKTVGEKSECPHSLLLMRKAFKGTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANPDL 60
           M  V  + +  H LL  RK F GTF+ AGGYDRE+GNK IA+G ADLV YGR FLANPDL
Sbjct: 277 MAIVEGRRKITHGLLPFRKLFNGTFIAAGGYDREEGNKVIADGYADLVAYGRHFLANPDL 336

Query: 61  PRRFEFNAPLNKYNRETFYVSDPVVGYTDYPFLD 94
           P+RF  NAPLNKYNR TFY+ DPVVGYTDYPFLD
Sbjct: 337 PKRFAINAPLNKYNRSTFYIQDPVVGYTDYPFLD 370

Putative oxophytodienoate reductase that may be involved in the biosynthesis or metabolism of oxylipin signaling molecules.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: -

>sp|Q0E0C6|OPR8_ORYSJ Putative 12-oxophytodienoate reductase 8 OS=Oryza sativa subsp. japonica GN=OPR8 PE=2 SV=1

 Score =  142 bits (358), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 61/90 (67%), Positives = 74/90 (82%)

Query: 4   VGEKSECPHSLLLMRKAFKGTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANPDLPRR 63
           V  K + P+ L   RK F GTF+VAGGY+RE+GN+A+++G  DLV YG++FLANPDLPRR
Sbjct: 314 VDGKVQIPYKLWHFRKVFAGTFIVAGGYNREEGNRAVSQGYTDLVAYGKWFLANPDLPRR 373

Query: 64  FEFNAPLNKYNRETFYVSDPVVGYTDYPFL 93
           FE NAPLNKY+R TFY SDPV+GYTDYPFL
Sbjct: 374 FELNAPLNKYDRSTFYTSDPVIGYTDYPFL 403

Putative oxophytodienoate reductase that may be involved in the biosynthesis or metabolism of oxylipin signaling molecules.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: -

>sp|Q69TI0|OPR5_ORYSJ Putative 12-oxophytodienoate reductase 5 OS=Oryza sativa subsp. japonica GN=OPR5 PE=2 SV=1

 Score =  141 bits (355), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 63/94 (67%), Positives = 72/94 (76%)

Query: 1   MKTVGEKSECPHSLLLMRKAFKGTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANPDL 60
           M  V  + +  H LL  RKAFKGTF+ AGGYDRE+GNK I  G  DLV +GR FLANPDL
Sbjct: 271 MAIVDGRRQIQHGLLPFRKAFKGTFIAAGGYDREEGNKVIENGYTDLVSFGRLFLANPDL 330

Query: 61  PRRFEFNAPLNKYNRETFYVSDPVVGYTDYPFLD 94
           P+RFE +APLNKY+R TFY  DP+VGYTDYPFLD
Sbjct: 331 PKRFELDAPLNKYDRNTFYTQDPIVGYTDYPFLD 364

Putative oxophytodienoate reductase that may be involved in the biosynthesis or metabolism of oxylipin signaling molecules.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: -

>sp|Q69TH4|OPR2_ORYSJ Putative 12-oxophytodienoate reductase 2 OS=Oryza sativa subsp. japonica GN=OPR2 PE=3 SV=1

 Score =  140 bits (352), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 63/94 (67%), Positives = 73/94 (77%)

Query: 1   MKTVGEKSECPHSLLLMRKAFKGTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANPDL 60
           M  V  + +  H LL  RK F GTF+ AGGYDRE+GNK +A+G ADLV YGR FLANPDL
Sbjct: 272 MAIVEGRRKITHGLLPFRKQFNGTFIAAGGYDREEGNKVVADGYADLVAYGRLFLANPDL 331

Query: 61  PRRFEFNAPLNKYNRETFYVSDPVVGYTDYPFLD 94
           PRRFE +APLN+Y+R TFY  DPVVGYTDYPFL+
Sbjct: 332 PRRFELDAPLNRYDRSTFYTQDPVVGYTDYPFLE 365

Putative oxophytodienoate reductase that may be involved in the biosynthesis or metabolism of oxylipin signaling molecules.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: -

>sp|Q84QK0|OPR1_ORYSJ 12-oxophytodienoate reductase 1 OS=Oryza sativa subsp. japonica GN=OPR1 PE=2 SV=1

 Score =  139 bits (351), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 62/94 (65%), Positives = 73/94 (77%)

Query: 1   MKTVGEKSECPHSLLLMRKAFKGTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANPDL 60
           M  +  + +  H LL  RK F GTF+ AGGYDRE+GNK +A+G ADLV YGR FLANPDL
Sbjct: 276 MAIIEGRRKIAHGLLPFRKQFNGTFIAAGGYDREEGNKVVADGYADLVAYGRLFLANPDL 335

Query: 61  PRRFEFNAPLNKYNRETFYVSDPVVGYTDYPFLD 94
           PRRFE +APLN+Y+R TFY  DPVVGYTDYPFL+
Sbjct: 336 PRRFELDAPLNRYDRSTFYTQDPVVGYTDYPFLE 369

Probably involved in the biosynthesis or metabolism of oxylipin signaling molecules. In vitro, reduces cis(-)-12-oxophytodienoic acid (cis(-)-OPDA) and to cis(-)-OPC-8:0.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 4

EC: 2

>sp|Q69TI2|OPR6_ORYSJ Putative 12-oxophytodienoate reductase 6 OS=Oryza sativa subsp. japonica GN=OPR6 PE=2 SV=1

 Score =  137 bits (346), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 62/93 (66%), Positives = 72/93 (77%)

Query: 1   MKTVGEKSECPHSLLLMRKAFKGTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANPDL 60
           M  V  + +  H LL  RK F GTF+ AGGYDRE+GNKA+A+G ADLV YGR FLANPDL
Sbjct: 283 MAIVDGRRQIQHGLLPFRKQFNGTFIAAGGYDREEGNKAVADGYADLVAYGRLFLANPDL 342

Query: 61  PRRFEFNAPLNKYNRETFYVSDPVVGYTDYPFL 93
           P+RFE +AP+N Y+R TFY  DPVVGYTDYPFL
Sbjct: 343 PKRFELDAPMNNYDRNTFYTQDPVVGYTDYPFL 375

Putative oxophytodienoate reductase that may be involved in the biosynthesis or metabolism of oxylipin signaling molecules.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	104
255570937	278	12-oxophytodienoate reductase opr, putat	0.932	0.348	0.824	3e-43
147809487	350	hypothetical protein VITISV_011309 [Viti	0.923	0.274	0.822	1e-41
225460240	379	PREDICTED: 12-oxophytodienoate reductase	0.903	0.248	0.840	2e-41
359493353	361	PREDICTED: LOW QUALITY PROTEIN: 12-oxoph	0.923	0.265	0.822	2e-41
147782387	367	hypothetical protein VITISV_031221 [Viti	0.923	0.261	0.822	3e-41
225460244	379	PREDICTED: 12-oxophytodienoate reductase	0.923	0.253	0.822	3e-41
147778557	379	hypothetical protein VITISV_033920 [Viti	0.903	0.248	0.829	1e-40
40645459	375	LEDI-5c protein [Lithospermum erythrorhi	0.932	0.258	0.793	2e-40
2232254	379	old-yellow-enzyme homolog [Catharanthus	0.923	0.253	0.791	7e-40
356497438	371	PREDICTED: 12-oxophytodienoate reductase	0.903	0.253	0.797	8e-40

>gi|255570937|ref|XP_002526420.1| 12-oxophytodienoate reductase opr, putative [Ricinus communis] gi|223534282|gb|EEF35996.1| 12-oxophytodienoate reductase opr, putative [Ricinus communis]

 Score =  178 bits (452), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 80/97 (82%), Positives = 88/97 (90%)

Query: 1   MKTVGEKSECPHSLLLMRKAFKGTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANPDL 60
           MKTVGEKSECP SLL MRKAFKGTF+ AGGYD EDGNKA+AE RADL+ +GR FLANPDL
Sbjct: 182 MKTVGEKSECPQSLLPMRKAFKGTFIAAGGYDMEDGNKAVAENRADLIAFGRLFLANPDL 241

Query: 61  PRRFEFNAPLNKYNRETFYVSDPVVGYTDYPFLDTSS 97
           PRRFE NAPLNKYNRETFY+SDPV+GYTDYPFL+ S+
Sbjct: 242 PRRFELNAPLNKYNRETFYISDPVIGYTDYPFLEAST 278

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147809487|emb|CAN66656.1| hypothetical protein VITISV_011309 [Vitis vinifera]

 Score =  173 bits (438), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 79/96 (82%), Positives = 86/96 (89%)

Query: 1   MKTVGEKSECPHSLLLMRKAFKGTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANPDL 60
           MKT+GEKSEC HSLL MRKAF GTFLVAGGYDREDGN A+AE RADLVVYGR+FLANPDL
Sbjct: 254 MKTLGEKSECAHSLLPMRKAFNGTFLVAGGYDREDGNNAVAENRADLVVYGRWFLANPDL 313

Query: 61  PRRFEFNAPLNKYNRETFYVSDPVVGYTDYPFLDTS 96
           P+RF  NAPLNKYNRETFY  DP+VGYTDYPFL+ +
Sbjct: 314 PKRFALNAPLNKYNRETFYTPDPIVGYTDYPFLEDT 349

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225460240|ref|XP_002281119.1| PREDICTED: 12-oxophytodienoate reductase 2 [Vitis vinifera]

 Score =  172 bits (437), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 79/94 (84%), Positives = 84/94 (89%)

Query: 1   MKTVGEKSECPHSLLLMRKAFKGTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANPDL 60
           MKTVGEK ECPHSLL MRKAF GTFLVAGGYDREDGN A+AE RADLV YGR+FLANPDL
Sbjct: 283 MKTVGEKCECPHSLLPMRKAFNGTFLVAGGYDREDGNNALAENRADLVAYGRWFLANPDL 342

Query: 61  PRRFEFNAPLNKYNRETFYVSDPVVGYTDYPFLD 94
           P+RF  NAPLNKYNRETFY  DPV+GYTDYPFL+
Sbjct: 343 PKRFALNAPLNKYNRETFYTPDPVLGYTDYPFLE 376

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359493353|ref|XP_002278021.2| PREDICTED: LOW QUALITY PROTEIN: 12-oxophytodienoate reductase 2-like [Vitis vinifera]

 Score =  172 bits (436), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 79/96 (82%), Positives = 86/96 (89%)

Query: 1   MKTVGEKSECPHSLLLMRKAFKGTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANPDL 60
           MKT+GEKSEC HSLL MRKAF GTFLVAGGYDREDGN A+AE RADLVVYGR+FLANPDL
Sbjct: 265 MKTLGEKSECAHSLLPMRKAFNGTFLVAGGYDREDGNNAVAENRADLVVYGRWFLANPDL 324

Query: 61  PRRFEFNAPLNKYNRETFYVSDPVVGYTDYPFLDTS 96
           P+RF  NAPLNKYNRETFY  DP+VGYTDYPFL+ +
Sbjct: 325 PKRFALNAPLNKYNRETFYTPDPIVGYTDYPFLEDT 360

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147782387|emb|CAN66144.1| hypothetical protein VITISV_031221 [Vitis vinifera]

 Score =  172 bits (435), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 79/96 (82%), Positives = 86/96 (89%)

Query: 1   MKTVGEKSECPHSLLLMRKAFKGTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANPDL 60
           MKT+GEKSEC HSLL MRKAF GTFLVAGGYDREDGN A+AE RADLVVYGR+FLANPDL
Sbjct: 271 MKTLGEKSECAHSLLPMRKAFNGTFLVAGGYDREDGNNAVAENRADLVVYGRWFLANPDL 330

Query: 61  PRRFEFNAPLNKYNRETFYVSDPVVGYTDYPFLDTS 96
           P+RF  NAPLNKYNRETFY  DPV+GYTDYPFL+ +
Sbjct: 331 PKRFALNAPLNKYNRETFYTPDPVLGYTDYPFLEDA 366

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225460244|ref|XP_002281348.1| PREDICTED: 12-oxophytodienoate reductase 2 isoform 1 [Vitis vinifera]

 Score =  172 bits (435), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 79/96 (82%), Positives = 86/96 (89%)

Query: 1   MKTVGEKSECPHSLLLMRKAFKGTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANPDL 60
           MKT+GEKSEC HSLL MRKAF GTFLVAGGYDREDGN A+AE RADLVVYGR+FLANPDL
Sbjct: 283 MKTLGEKSECAHSLLPMRKAFNGTFLVAGGYDREDGNNAVAENRADLVVYGRWFLANPDL 342

Query: 61  PRRFEFNAPLNKYNRETFYVSDPVVGYTDYPFLDTS 96
           P+RF  NAPLNKYNRETFY  DPV+GYTDYPFL+ +
Sbjct: 343 PKRFALNAPLNKYNRETFYTPDPVLGYTDYPFLEDA 378

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147778557|emb|CAN60665.1| hypothetical protein VITISV_033920 [Vitis vinifera]

 Score =  170 bits (430), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 78/94 (82%), Positives = 83/94 (88%)

Query: 1   MKTVGEKSECPHSLLLMRKAFKGTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANPDL 60
           MKTVGEK ECPHSLL MRKAF GTFLVAGGYD EDGN A+AE RADLV YGR+FLANPDL
Sbjct: 283 MKTVGEKCECPHSLLPMRKAFNGTFLVAGGYDXEDGNNALAENRADLVAYGRWFLANPDL 342

Query: 61  PRRFEFNAPLNKYNRETFYVSDPVVGYTDYPFLD 94
           P+RF  NAPLNKYNRETFY  DPV+GYTDYPFL+
Sbjct: 343 PKRFALNAPLNKYNRETFYTPDPVLGYTDYPFLE 376

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|40645459|dbj|BAD06575.1| LEDI-5c protein [Lithospermum erythrorhizon]

 Score =  169 bits (428), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 77/97 (79%), Positives = 89/97 (91%)

Query: 1   MKTVGEKSECPHSLLLMRKAFKGTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANPDL 60
           MKTVGEK+E P+SL+ MRKAFKGTFLVAGGY ++DGN+AI EGRADLVVYGR FLANPDL
Sbjct: 279 MKTVGEKTESPYSLMPMRKAFKGTFLVAGGYGKDDGNQAITEGRADLVVYGRIFLANPDL 338

Query: 61  PRRFEFNAPLNKYNRETFYVSDPVVGYTDYPFLDTSS 97
           P+RFE +APLNKYNRETFY+ DPVVGYTDYPFL+ ++
Sbjct: 339 PKRFELDAPLNKYNRETFYIPDPVVGYTDYPFLEDTA 375

Source: Lithospermum erythrorhizon

Species: Lithospermum erythrorhizon

Genus: Lithospermum

Family: Boraginaceae

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|2232254|gb|AAB62248.1| old-yellow-enzyme homolog [Catharanthus roseus]

 Score =  167 bits (423), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 76/96 (79%), Positives = 85/96 (88%)

Query: 1   MKTVGEKSECPHSLLLMRKAFKGTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANPDL 60
           MKT+GE  E PHSLL MRKAF+GTF+ AGGYDREDG KA+AE RADLVVYGR FLANPDL
Sbjct: 283 MKTLGENCEVPHSLLPMRKAFRGTFMAAGGYDREDGIKALAENRADLVVYGRLFLANPDL 342

Query: 61  PRRFEFNAPLNKYNRETFYVSDPVVGYTDYPFLDTS 96
           P+RFE NAPLNKYNRETFY+ DPV+GYTDYPFL+ +
Sbjct: 343 PKRFELNAPLNKYNRETFYIPDPVLGYTDYPFLEAT 378

Source: Catharanthus roseus

Species: Catharanthus roseus

Genus: Catharanthus

Family: Apocynaceae

Order: Gentianales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356497438|ref|XP_003517567.1| PREDICTED: 12-oxophytodienoate reductase 2-like [Glycine max]

 Score =  167 bits (423), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 75/94 (79%), Positives = 84/94 (89%)

Query: 1   MKTVGEKSECPHSLLLMRKAFKGTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANPDL 60
           MKTVGEK+ECPHSL+ MRKAF GTF+ AGGYDR+DG  A+AE RADLV YGR+FLANPDL
Sbjct: 269 MKTVGEKTECPHSLVPMRKAFNGTFIAAGGYDRQDGINAVAENRADLVAYGRWFLANPDL 328

Query: 61  PRRFEFNAPLNKYNRETFYVSDPVVGYTDYPFLD 94
           P+RF  NAPLNKY+RETFY SDPV+GYTDYPFLD
Sbjct: 329 PKRFALNAPLNKYHRETFYTSDPVLGYTDYPFLD 362

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	104
TAIR|locus:2030086	397	OPR1 "12-oxophytodienoate redu	0.932	0.244	0.701	2.7e-36
TAIR|locus:2030096	374	OPR2 "12-oxophytodienoate redu	0.932	0.259	0.701	1.2e-35
UNIPROTKB|Q84QK0	380	OPR1 "12-oxophytodienoate redu	0.903	0.247	0.659	1.3e-31
TAIR|locus:2012285	324	AT1G09400 [Arabidopsis thalian	0.692	0.222	0.763	3.6e-25
UNIPROTKB|C5H429	387	DBR2 "Artemisinic aldehyde Del	0.894	0.240	0.548	8.7e-24
TAIR|locus:2051516	391	OPR3 "oxophytodienoate-reducta	0.740	0.196	0.610	4.8e-23
UNIPROTKB|Q6Z965	394	OPR7 "12-oxophytodienoate redu	0.855	0.225	0.561	1.4e-22
UNIPROTKB|G5EHQ2	409	MGCH7_ch7g132 "12-oxophytodien	0.778	0.198	0.476	2.6e-16
POMBASE|SPAC5H10.10	392	SPAC5H10.10 "NADPH dehydrogena	0.826	0.219	0.426	1.3e-14
POMBASE|SPAC5H10.04	382	SPAC5H10.04 "NADPH dehydrogena	0.721	0.196	0.5	2.6e-14

TAIR|locus:2030086 OPR1 "12-oxophytodienoate reductase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 391 (142.7 bits), Expect = 2.7e-36, P = 2.7e-36
 Identities = 68/97 (70%), Positives = 86/97 (88%)

Query:     1 MKTVGEKSECPHSLLLMRKAFKGTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANPDL 60
             MKT+GE   CPH+L+ MRKAFKGTF+ AGG+ REDGN+A+++GR DLV YGR+FLANPDL
Sbjct:   301 MKTMGEVHACPHTLMPMRKAFKGTFISAGGFTREDGNEAVSKGRTDLVAYGRWFLANPDL 360

Query:    61 PRRFEFNAPLNKYNRETFYVSDPVVGYTDYPFLDTSS 97
             P+RF+ +APLNKY+R TFY SDPVVGYTDYPFL++++
Sbjct:   361 PKRFQVDAPLNKYDRPTFYTSDPVVGYTDYPFLESTA 397

GO:0003824 "catalytic activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0010150 "leaf senescence" evidence=TAS

GO:0010181 "FMN binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0009611 "response to wounding" evidence=IEP

GO:0009695 "jasmonic acid biosynthetic process" evidence=TAS

GO:0006629 "lipid metabolic process" evidence=TAS

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0046686 "response to cadmium ion" evidence=IEP

GO:0016629 "12-oxophytodienoate reductase activity" evidence=ISS;IDA

GO:0005829 "cytosol" evidence=IDA

GO:0031407 "oxylipin metabolic process" evidence=IDA

TAIR|locus:2030096 OPR2 "12-oxophytodienoate reductase 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 385 (140.6 bits), Expect = 1.2e-35, P = 1.2e-35
 Identities = 68/97 (70%), Positives = 85/97 (87%)

Query:     1 MKTVGEKSECPHSLLLMRKAFKGTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANPDL 60
             MKTVGE + C H+L+ MR+AFKGTF+ AGG+ REDGN+A+A+GR DLV YGR+FLANPDL
Sbjct:   278 MKTVGEIAACSHTLMPMREAFKGTFISAGGFTREDGNEAVAKGRTDLVAYGRWFLANPDL 337

Query:    61 PRRFEFNAPLNKYNRETFYVSDPVVGYTDYPFLDTSS 97
             P+RF+ +APLNKYNR TFY SDPVVGYTDYP L++++
Sbjct:   338 PKRFQLDAPLNKYNRSTFYTSDPVVGYTDYPSLESTA 374

GO:0003824 "catalytic activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0010181 "FMN binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0009611 "response to wounding" evidence=IEP

GO:0009695 "jasmonic acid biosynthetic process" evidence=TAS

GO:0016629 "12-oxophytodienoate reductase activity" evidence=ISS

UNIPROTKB|Q84QK0 OPR1 "12-oxophytodienoate reductase 1" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 347 (127.2 bits), Expect = 1.3e-31, P = 1.3e-31
 Identities = 62/94 (65%), Positives = 73/94 (77%)

Query:     1 MKTVGEKSECPHSLLLMRKAFKGTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANPDL 60
             M  +  + +  H LL  RK F GTF+ AGGYDRE+GNK +A+G ADLV YGR FLANPDL
Sbjct:   276 MAIIEGRRKIAHGLLPFRKQFNGTFIAAGGYDREEGNKVVADGYADLVAYGRLFLANPDL 335

Query:    61 PRRFEFNAPLNKYNRETFYVSDPVVGYTDYPFLD 94
             PRRFE +APLN+Y+R TFY  DPVVGYTDYPFL+
Sbjct:   336 PRRFELDAPLNRYDRSTFYTQDPVVGYTDYPFLE 369

GO:0006950 "response to stress" evidence=TAS

GO:0006952 "defense response" evidence=TAS

GO:0009695 "jasmonic acid biosynthetic process" evidence=IEP

GO:0016629 "12-oxophytodienoate reductase activity" evidence=IDA

GO:0031408 "oxylipin biosynthetic process" evidence=IDA

TAIR|locus:2012285 AT1G09400 [Arabidopsis thaliana (taxid:3702)]

 Score = 286 (105.7 bits), Expect = 3.6e-25, P = 3.6e-25
 Identities = 55/72 (76%), Positives = 58/72 (80%)

Query:     1 MKTVGEKSECPHSLLLMRKAFKGTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANPDL 60
             MKTV E  EC  SL  MR AF GTF+VAGGY REDGNKA+AEGR DLV YGR FLANPDL
Sbjct:   253 MKTVSEIFECRESLTPMRNAFNGTFIVAGGYTREDGNKAVAEGRTDLVAYGRLFLANPDL 312

Query:    61 PRRFEFNAPLNK 72
             P+RFE NAPLNK
Sbjct:   313 PKRFELNAPLNK 324

GO:0003824 "catalytic activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0010181 "FMN binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

UNIPROTKB|C5H429 DBR2 "Artemisinic aldehyde Delta(11(13)) reductase" [Artemisia annua (taxid:35608)]

 Score = 273 (101.2 bits), Expect = 8.7e-24, P = 8.7e-24
 Identities = 51/93 (54%), Positives = 65/93 (69%)

Query:     5 GEKSECPHSLLLMRKAFKGTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANPDLPRRF 64
             G + E    +   R A+ GTF+  GGY RE G +A+A+G ADLV +GR+F++NPDL  R 
Sbjct:   293 GSEEEVAQLMKTWRGAYVGTFICCGGYTRELGLQAVAQGDADLVAFGRYFVSNPDLVLRL 352

Query:    65 EFNAPLNKYNRETFYVSDPVVGYTDYPFLDTSS 97
             + NAPLN+Y+R TFY  DPVVGYTDYP LD  S
Sbjct:   353 KLNAPLNRYDRATFYTHDPVVGYTDYPSLDKGS 385

GO:0005829 "cytosol" evidence=IDA

GO:0016628 "oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor" evidence=IDA

TAIR|locus:2051516 OPR3 "oxophytodienoate-reductase 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 266 (98.7 bits), Expect = 4.8e-23, P = 4.8e-23
 Identities = 47/77 (61%), Positives = 61/77 (79%)

Query:    17 MRKAFKGTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEFNAPLNKYNRE 76
             +R A+ GTF+ +GG+++E G +A+ +G ADLV YGR F+ANPDL  RF+ +  LNKYNR+
Sbjct:   309 LRMAYNGTFMSSGGFNKELGMQAVQQGDADLVSYGRLFIANPDLVSRFKIDGELNKYNRK 368

Query:    77 TFYVSDPVVGYTDYPFL 93
             TFY  DPVVGYTDYPFL
Sbjct:   369 TFYTQDPVVGYTDYPFL 385

GO:0003824 "catalytic activity" evidence=IEA

GO:0010181 "FMN binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA;IMP

GO:0016629 "12-oxophytodienoate reductase activity" evidence=IDA;IMP

GO:0009611 "response to wounding" evidence=IGI;RCA

GO:0010193 "response to ozone" evidence=IEP

GO:0005777 "peroxisome" evidence=IDA

GO:0009620 "response to fungus" evidence=IEP;RCA

GO:0006569 "tryptophan catabolic process" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0009414 "response to water deprivation" evidence=RCA

GO:0009684 "indoleacetic acid biosynthetic process" evidence=RCA

GO:0009694 "jasmonic acid metabolic process" evidence=RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009733 "response to auxin stimulus" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

UNIPROTKB|Q6Z965 OPR7 "12-oxophytodienoate reductase 7" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 262 (97.3 bits), Expect = 1.4e-22, P = 1.4e-22
 Identities = 50/89 (56%), Positives = 61/89 (68%)

Query:     5 GEKSECPHSLLLMRKAFKGTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANPDLPRRF 64
             G   E    +  +R  ++GTF+ +GGY RE G +A+  G ADLV YGR F++NPDL  RF
Sbjct:   299 GSAEEESRLMRTLRGTYQGTFMCSGGYTRELGLEAVESGDADLVSYGRLFISNPDLVERF 358

Query:    65 EFNAPLNKYNRETFYVSDPVVGYTDYPFL 93
               NA LNKY R+TFY  DPVVGYTDYPFL
Sbjct:   359 RLNAGLNKYVRKTFYTPDPVVGYTDYPFL 387

GO:0005777 "peroxisome" evidence=IDA

GO:0009695 "jasmonic acid biosynthetic process" evidence=IDA

GO:0016629 "12-oxophytodienoate reductase activity" evidence=IDA

GO:0031408 "oxylipin biosynthetic process" evidence=IDA

UNIPROTKB|G5EHQ2 MGCH7_ch7g132 "12-oxophytodienoate reductase 1" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 208 (78.3 bits), Expect = 2.6e-16, P = 2.6e-16
 Identities = 40/84 (47%), Positives = 54/84 (64%)

Query:    14 LLLMRKAFKGT-FLVAGGYDREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEFNAPLNK 72
             L + R+ F GT F  AGG+D + G +A+ +G  D +VYGR+F +NPDL RR + + P N 
Sbjct:   321 LSMFREIFAGTPFFSAGGFDAKTGKEAVEKGTYDAIVYGRYFTSNPDLVRRVKEDLPFNP 380

Query:    73 YNRETFY--VSDPVVGYTDYPFLD 94
             YNRE FY    DP +GYTD+   D
Sbjct:   381 YNRERFYGPFEDPTIGYTDFATYD 404

GO:0005575 "cellular_component" evidence=ND

POMBASE|SPAC5H10.10 SPAC5H10.10 "NADPH dehydrogenase (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 192 (72.6 bits), Expect = 1.3e-14, P = 1.3e-14
 Identities = 38/89 (42%), Positives = 56/89 (62%)

Query:    15 LLMRKAFKGTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEFNAPLNKYN 74
             L+ +  +   F+ AGG+DR+   + +AE    LV +GR+FL+NPDLP R ++N PLNK++
Sbjct:   305 LIYKNLWGDPFITAGGHDRDSAIQ-MAEQENTLVAFGRYFLSNPDLPFRLKYNLPLNKWD 363

Query:    75 RETFYVSDPVVGYTDYPFLDTSSYVTKKK 103
             R TFY      GY DYPF  +  ++  KK
Sbjct:   364 RATFYTKMSPKGYIDYPF--SKEFLDTKK 390

GO:0003959 "NADPH dehydrogenase activity" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0006091 "generation of precursor metabolites and energy" evidence=NAS

GO:0010181 "FMN binding" evidence=IEA

GO:0018548 "pentaerythritol trinitrate reductase activity" evidence=IEA

GO:0052690 "trichloro-p-hydroquinone reductive dehalogenase activity" evidence=IEA

POMBASE|SPAC5H10.04 SPAC5H10.04 "NADPH dehydrogenase (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 189 (71.6 bits), Expect = 2.6e-14, P = 2.6e-14
 Identities = 38/76 (50%), Positives = 51/76 (67%)

Query:    17 MRKAFKGTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEFNAPLNKYNRE 76
             ++K +KG F+ AGGYD E   +A  E R  LV +GR F+ANPDL  R + + PLNK++R 
Sbjct:   300 LQKYWKGPFITAGGYDPETAVQAANE-RGVLVAFGRNFIANPDLVFRIKHHIPLNKWDRS 358

Query:    77 TFYVSDPVVGYTDYPF 92
             +FY+     GYTDYPF
Sbjct:   359 SFYLPKTEKGYTDYPF 374

GO:0003959 "NADPH dehydrogenase activity" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0008150 "biological_process" evidence=ND

GO:0010181 "FMN binding" evidence=IEA

GO:0018548 "pentaerythritol trinitrate reductase activity" evidence=IEA

GO:0052690 "trichloro-p-hydroquinone reductive dehalogenase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q69TH8	OPR4_ORYSJ	1, ., 3, ., 1, ., -	0.7021	0.9038	0.2473	yes	no
B9FSC8	OPR11_ORYSJ	1, ., 3, ., 1, ., -	0.7204	0.8942	0.2534	yes	no
Q8LAH7	OPR1_ARATH	1, ., 3, ., 1, ., 4, 2	0.7010	0.9326	0.2607	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	104
PLN02411	391	PLN02411, PLN02411, 12-oxophytodienoate reductase	2e-37
cd02933	338	cd02933, OYE_like_FMN, Old yellow enzyme (OYE)-lik	3e-30
PRK10605	362	PRK10605, PRK10605, N-ethylmaleimide reductase; Pr	3e-19
COG1902	363	COG1902, NemA, NADH:flavin oxidoreductases, Old Ye	1e-15
pfam00724	336	pfam00724, Oxidored_FMN, NADH:flavin oxidoreductas	8e-13
cd02803	327	cd02803, OYE_like_FMN_family, Old yellow enzyme (O	1e-11
cd02932	336	cd02932, OYE_YqiM_FMN, Old yellow enzyme (OYE) Yqj	6e-05
cd04733	338	cd04733, OYE_like_2_FMN, Old yellow enzyme (OYE)-r	4e-04
cd04734	343	cd04734, OYE_like_3_FMN, Old yellow enzyme (OYE)-r	0.001

>gnl|CDD|178033 PLN02411, PLN02411, 12-oxophytodienoate reductase

 Score =  129 bits (326), Expect = 2e-37
 Identities = 49/76 (64%), Positives = 62/76 (81%)

Query: 18  RKAFKGTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEFNAPLNKYNRET 77
           R+A++GTF+ +GG+ RE G +A+ +G ADLV YGR F++NPDL  RF+ NAPLNKY R+T
Sbjct: 309 RRAYQGTFMCSGGFTRELGMQAVQQGDADLVSYGRLFISNPDLVLRFKLNAPLNKYIRKT 368

Query: 78  FYVSDPVVGYTDYPFL 93
           FY  DPVVGYTDYPFL
Sbjct: 369 FYTQDPVVGYTDYPFL 384

Length = 391

>gnl|CDD|239243 cd02933, OYE_like_FMN, Old yellow enzyme (OYE)-like FMN binding domain

 Score =  109 bits (275), Expect = 3e-30
 Identities = 36/71 (50%), Positives = 48/71 (67%)

Query: 5   GEKSECPHSLLLMRKAFKGTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANPDLPRRF 64
             + + P  L  +RKAFKG  + AGGYD E    A+A+G+ADLV +GR F+ANPDL  R 
Sbjct: 268 NPEDQPPDFLDFLRKAFKGPLIAAGGYDAESAEAALADGKADLVAFGRPFIANPDLVERL 327

Query: 65  EFNAPLNKYNR 75
           +  APLN+Y+R
Sbjct: 328 KNGAPLNEYDR 338

OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes. Length = 338

>gnl|CDD|182584 PRK10605, PRK10605, N-ethylmaleimide reductase; Provisional

 Score = 79.8 bits (197), Expect = 3e-19
 Identities = 32/77 (41%), Positives = 40/77 (51%), Gaps = 1/77 (1%)

Query: 17  MRKAFKGTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEFNAPLNKYNRE 76
           +R  F G  + AG Y  E     I +G  D V +GR ++ANPDL  R +  A LN    E
Sbjct: 287 VRARFHGVIIGAGAYTAEKAETLIGKGLIDAVAFGRDYIANPDLVARLQRKAELNPQRPE 346

Query: 77  TFYVSDPVVGYTDYPFL 93
           +FY      GYTDYP L
Sbjct: 347 SFYGGGA-EGYTDYPTL 362

Length = 362

>gnl|CDD|224814 COG1902, NemA, NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]

 Score = 70.4 bits (173), Expect = 1e-15
 Identities = 31/77 (40%), Positives = 40/77 (51%), Gaps = 3/77 (3%)

Query: 18  RKAFKGTFLVAGG-YDREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEFNAPLNKYNRE 76
           +KA +   +  GG  D E   + +A GRADLV  GR FLA+PDL  +      L    R 
Sbjct: 284 KKAVRIPVIAVGGINDPEQAEEILASGRADLVAMGRPFLADPDLVLKAAEGRELEI--RP 341

Query: 77  TFYVSDPVVGYTDYPFL 93
             Y +   +GYTDYP L
Sbjct: 342 CIYCNQYCLGYTDYPLL 358

Length = 363

>gnl|CDD|216083 pfam00724, Oxidored_FMN, NADH:flavin oxidoreductase / NADH oxidase family

 Score = 62.0 bits (151), Expect = 8e-13
 Identities = 22/61 (36%), Positives = 34/61 (55%), Gaps = 1/61 (1%)

Query: 12  HSLLLMRKAFKGTFLVAGGYDR-EDGNKAIAEGRADLVVYGRFFLANPDLPRRFEFNAPL 70
            +   ++K +KG  +  G  +  E   + + EGRADLV  GR FLA+PDL ++ +   P 
Sbjct: 276 ENNEFIKKVWKGPVITVGRINDPEFAAEIVEEGRADLVAMGRPFLADPDLVKKAKEGRPD 335

Query: 71  N 71
           N
Sbjct: 336 N 336

Length = 336

>gnl|CDD|239201 cd02803, OYE_like_FMN_family, Old yellow enzyme (OYE)-like FMN binding domain

 Score = 58.7 bits (143), Expect = 1e-11
 Identities = 22/51 (43%), Positives = 30/51 (58%), Gaps = 1/51 (1%)

Query: 16  LMRKAFKGTFLVAGG-YDREDGNKAIAEGRADLVVYGRFFLANPDLPRRFE 65
            ++KA K   +  GG  D E   + +AEG+ADLV  GR  LA+PDLP +  
Sbjct: 275 KIKKAVKIPVIAVGGIRDPEVAEEILAEGKADLVALGRALLADPDLPNKAR 325

OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. Length = 327

>gnl|CDD|239242 cd02932, OYE_YqiM_FMN, Old yellow enzyme (OYE) YqjM-like FMN binding domain

 Score = 39.8 bits (94), Expect = 6e-05
 Identities = 12/28 (42%), Positives = 13/28 (46%)

Query: 37  NKAIAEGRADLVVYGRFFLANPDLPRRF 64
              +  GRADLV  GR  L NP  P   
Sbjct: 306 EAILESGRADLVALGRELLRNPYWPLHA 333

YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs. Length = 336

>gnl|CDD|240084 cd04733, OYE_like_2_FMN, Old yellow enzyme (OYE)-related FMN binding domain, group 2

 Score = 37.6 bits (88), Expect = 4e-04
 Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 1/48 (2%)

Query: 17  MRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLPRR 63
           +RK  K   +V GG+  R    +A+A G  D +   R     PDLP +
Sbjct: 287 IRKVTKTPLMVTGGFRTRAAMEQALASGAVDGIGLARPLALEPDLPNK 334

Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. Length = 338

>gnl|CDD|240085 cd04734, OYE_like_3_FMN, Old yellow enzyme (OYE)-related FMN binding domain, group 3

 Score = 36.1 bits (84), Expect = 0.001
 Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 1/47 (2%)

Query: 17  MRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLPR 62
           +++A       AG   D  +  +A+A G AD+V   R  +A+P L  
Sbjct: 280 IKQAVDLPVFHAGRIRDPAEAEQALAAGHADMVGMTRAHIADPHLVA 326

Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase. Length = 343

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	104
PLN02411	391	12-oxophytodienoate reductase	99.83
PRK10605	362	N-ethylmaleimide reductase; Provisional	99.75
COG1902	363	NemA NADH:flavin oxidoreductases, Old Yellow Enzym	99.61
cd02933	338	OYE_like_FMN Old yellow enzyme (OYE)-like FMN bind	99.55
KOG0134	400	consensus NADH:flavin oxidoreductase/12-oxophytodi	99.54
PF00724	341	Oxidored_FMN: NADH:flavin oxidoreductase / NADH ox	99.53
cd02929	370	TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH)	99.43
cd02931	382	ER_like_FMN Enoate reductase (ER)-like FMN-binding	99.41
cd04747	361	OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN	99.4
cd04734	343	OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN	99.39
cd04733	338	OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN	99.39
PRK13523	337	NADPH dehydrogenase NamA; Provisional	99.36
cd02930	353	DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-bindin	99.3
cd02803	327	OYE_like_FMN_family Old yellow enzyme (OYE)-like F	99.29
cd02932	336	OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN	99.23
cd04735	353	OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN	99.22
PRK08255	765	salicylyl-CoA 5-hydroxylase; Reviewed	99.13
cd02801	231	DUS_like_FMN Dihydrouridine synthase-like (DUS-lik	99.05
PRK10550	312	tRNA-dihydrouridine synthase C; Provisional	99.0
PRK07259	301	dihydroorotate dehydrogenase 1B; Reviewed	98.9
TIGR01037	300	pyrD_sub1_fam dihydroorotate dehydrogenase (subfam	98.88
TIGR00737	319	nifR3_yhdG putative TIM-barrel protein, nifR3 fami	98.86
cd04740	296	DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) c	98.86
cd02810	289	DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD)	98.74
PRK10415	321	tRNA-dihydrouridine synthase B; Provisional	98.7
PRK11815	333	tRNA-dihydrouridine synthase A; Provisional	98.55
PRK05286	344	dihydroorotate dehydrogenase 2; Reviewed	98.43
cd04738	327	DHOD_2_like Dihydroorotate dehydrogenase (DHOD) cl	98.42
cd04731	243	HisF The cyclase subunit of imidazoleglycerol phos	98.33
TIGR00742	318	yjbN tRNA dihydrouridine synthase A. Members of th	98.25
PRK07565	334	dihydroorotate dehydrogenase 2; Reviewed	98.24
cd04732	234	HisA HisA. Phosphoribosylformimino-5-aminoimidazol	98.24
PRK02083	253	imidazole glycerol phosphate synthase subunit HisF	98.14
TIGR00735	254	hisF imidazoleglycerol phosphate synthase, cyclase	98.12
COG0042	323	tRNA-dihydrouridine synthase [Translation, ribosom	98.12
TIGR01036	335	pyrD_sub2 dihydroorotate dehydrogenase, subfamily	98.11
cd02911	233	arch_FMN Archeal FMN-binding domain. This family o	98.11
cd04739	325	DHOD_like Dihydroorotate dehydrogenase (DHOD) like	98.09
PF01207	309	Dus: Dihydrouridine synthase (Dus); InterPro: IPR0	98.02
cd04741	294	DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) c	98.0
TIGR02151	333	IPP_isom_2 isopentenyl-diphosphate delta-isomerase	98.0
cd02940	299	DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FM	97.95
TIGR00736	231	nifR3_rel_arch TIM-barrel protein, putative. Membe	97.93
PRK01130	221	N-acetylmannosamine-6-phosphate 2-epimerase; Provi	97.82
PRK00748	233	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met	97.78
cd02812	219	PcrB_like PcrB_like proteins. One member of this f	97.74
TIGR03572	232	WbuZ glycosyl amidation-associated protein WbuZ. T	97.74
cd00564	196	TMP_TenI Thiamine monophosphate synthase (TMP synt	97.72
PRK13585	241	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met	97.72
cd04729	219	NanE N-acetylmannosamine-6-phosphate epimerase (Na	97.68
PRK08318	420	dihydropyrimidine dehydrogenase subunit B; Validat	97.67
PRK14024	241	phosphoribosyl isomerase A; Provisional	97.64
TIGR01768	223	GGGP-family geranylgeranylglyceryl phosphate synth	97.64
COG0107	256	HisF Imidazoleglycerol-phosphate synthase [Amino a	97.64
PRK07695	201	transcriptional regulator TenI; Provisional	97.64
PRK13585	241	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met	97.61
PF01180	295	DHO_dh: Dihydroorotate dehydrogenase; InterPro: IP	97.6
KOG2335	358	consensus tRNA-dihydrouridine synthase [Translatio	97.59
cd02811	326	IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl di	97.55
PRK04128	228	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met	97.53
PRK04169	232	geranylgeranylglyceryl phosphate synthase-like pro	97.52
PRK05437	352	isopentenyl pyrophosphate isomerase; Provisional	97.48
cd04731	243	HisF The cyclase subunit of imidazoleglycerol phos	97.47
PLN02826	409	dihydroorotate dehydrogenase	97.47
cd00429	211	RPE Ribulose-5-phosphate 3-epimerase (RPE). This e	97.47
PRK00043	212	thiE thiamine-phosphate pyrophosphorylase; Reviewe	97.45
cd04732	234	HisA HisA. Phosphoribosylformimino-5-aminoimidazol	97.45
PF00977	229	His_biosynth: Histidine biosynthesis protein; Inte	97.44
PRK00748	233	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met	97.44
TIGR00735	254	hisF imidazoleglycerol phosphate synthase, cyclase	97.43
PRK02506	310	dihydroorotate dehydrogenase 1A; Reviewed	97.43
cd02809	299	alpha_hydroxyacid_oxid_FMN Family of homologous FM	97.4
PRK13587	234	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met	97.4
cd04726	202	KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxyl	97.36
TIGR01163	210	rpe ribulose-phosphate 3-epimerase. This family co	97.36
COG0167	310	PyrD Dihydroorotate dehydrogenase [Nucleotide tran	97.34
cd04730	236	NPD_like 2-Nitropropane dioxygenase (NPD), one of	97.32
TIGR01919	243	hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosy	97.28
TIGR03572	232	WbuZ glycosyl amidation-associated protein WbuZ. T	97.25
TIGR03151	307	enACPred_II putative enoyl-(acyl-carrier-protein)	97.23
TIGR00007	230	phosphoribosylformimino-5-aminoimidazole carboxami	97.2
TIGR00007	230	phosphoribosylformimino-5-aminoimidazole carboxami	97.17
PRK05581	220	ribulose-phosphate 3-epimerase; Validated	97.15
PRK04180	293	pyridoxal biosynthesis lyase PdxS; Provisional	97.15
PRK01033	258	imidazole glycerol phosphate synthase subunit HisF	97.12
cd00331	217	IGPS Indole-3-glycerol phosphate synthase (IGPS);	97.12
COG0352	211	ThiE Thiamine monophosphate synthase [Coenzyme met	97.11
cd04727	283	pdxS PdxS is a subunit of the pyridoxal 5'-phospha	97.1
PRK01033	258	imidazole glycerol phosphate synthase subunit HisF	97.05
PF03060	330	NMO: Nitronate monooxygenase; InterPro: IPR004136	97.04
TIGR00693	196	thiE thiamine-phosphate pyrophosphorylase. This mo	97.03
TIGR00343	287	pyridoxal 5'-phosphate synthase, synthase subunit	97.0
PRK06512	221	thiamine-phosphate pyrophosphorylase; Provisional	97.0
PRK14024	241	phosphoribosyl isomerase A; Provisional	96.95
TIGR02129	253	hisA_euk phosphoribosylformimino-5-aminoimidazole	96.95
PLN02334	229	ribulose-phosphate 3-epimerase	96.94
PRK14114	241	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met	96.89
TIGR02708	367	L_lactate_ox L-lactate oxidase. Members of this pr	96.85
PRK05458	326	guanosine 5'-monophosphate oxidoreductase; Provisi	96.83
PRK13586	232	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met	96.81
PF01884	230	PcrB: PcrB family; InterPro: IPR008205 This entry	96.81
PRK07028	430	bifunctional hexulose-6-phosphate synthase/ribonuc	96.81
cd04728	248	ThiG Thiazole synthase (ThiG) is the tetrameric en	96.81
PRK07455	187	keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog	96.77
cd04737	351	LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding d	96.75
PRK04302	223	triosephosphate isomerase; Provisional	96.75
TIGR00734	221	hisAF_rel hisA/hisF family protein. This alignment	96.73
PLN02495	385	oxidoreductase, acting on the CH-CH group of donor	96.72
TIGR01769	205	GGGP geranylgeranylglyceryl phosphate synthase. Th	96.72
PRK09140	206	2-dehydro-3-deoxy-6-phosphogalactonate aldolase; R	96.64
cd04736	361	MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-bin	96.64
cd04722	200	TIM_phosphate_binding TIM barrel proteins share a	96.63
PRK00208	250	thiG thiazole synthase; Reviewed	96.58
PRK02615	347	thiamine-phosphate pyrophosphorylase; Provisional	96.57
TIGR03128	206	RuMP_HxlA 3-hexulose-6-phosphate synthase. at the	96.53
PRK06552	213	keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog	96.51
COG2070	336	Dioxygenases related to 2-nitropropane dioxygenase	96.48
TIGR00262	256	trpA tryptophan synthase, alpha subunit. Tryptopha	96.47
PRK03512	211	thiamine-phosphate pyrophosphorylase; Provisional	96.47
PRK08883	220	ribulose-phosphate 3-epimerase; Provisional	96.45
PLN02535	364	glycolate oxidase	96.43
COG1304	360	idi Isopentenyl diphosphate isomerase (BS_ypgA, MT	96.36
cd02808	392	GltS_FMN Glutamate synthase (GltS) FMN-binding dom	96.36
COG0106	241	HisA Phosphoribosylformimino-5-aminoimidazole carb	96.33
PTZ00170	228	D-ribulose-5-phosphate 3-epimerase; Provisional	96.31
PF01070	356	FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR	96.31
cd00452	190	KDPG_aldolase KDPG and KHG aldolase. This family b	96.3
PF04131	192	NanE: Putative N-acetylmannosamine-6-phosphate epi	96.27
cd04723	233	HisA_HisF Phosphoribosylformimino-5-aminoimidazole	96.25
cd03332	383	LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-bindin	96.25
PLN02446	262	(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methy	96.24
PRK00278	260	trpC indole-3-glycerol-phosphate synthase; Reviewe	96.23
cd00381	325	IMPDH IMPDH: The catalytic domain of the inosine m	96.21
PRK02083	253	imidazole glycerol phosphate synthase subunit HisF	96.18
cd02922	344	FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding dom	96.18
cd04742	418	NPD_FabD 2-Nitropropane dioxygenase (NPD)-like dom	96.16
cd04723	233	HisA_HisF Phosphoribosylformimino-5-aminoimidazole	96.12
TIGR02814	444	pfaD_fam PfaD family protein. The protein PfaD is	96.11
PLN02979	366	glycolate oxidase	96.0
TIGR01306	321	GMP_reduct_2 guanosine monophosphate reductase, ba	95.96
PRK13587	234	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met	95.95
PF00977	229	His_biosynth: Histidine biosynthesis protein; Inte	95.94
PRK11197	381	lldD L-lactate dehydrogenase; Provisional	95.89
PLN02493	367	probable peroxisomal (S)-2-hydroxy-acid oxidase	95.88
cd00958	235	DhnA Class I fructose-1,6-bisphosphate (FBP) aldol	95.78
TIGR01949	258	AroFGH_arch predicted phospho-2-dehydro-3-deoxyhep	95.77
PLN02617	538	imidazole glycerol phosphate synthase hisHF	95.71
PLN02898	502	HMP-P kinase/thiamin-monophosphate pyrophosphoryla	95.68
TIGR01304	369	IMP_DH_rel_2 IMP dehydrogenase family protein. Thi	95.67
PLN02591	250	tryptophan synthase	95.62
CHL00200	263	trpA tryptophan synthase alpha subunit; Provisiona	95.57
TIGR00734	221	hisAF_rel hisA/hisF family protein. This alignment	95.49
COG1646	240	Predicted phosphate-binding enzymes, TIM-barrel fo	95.46
cd00405	203	PRAI Phosphoribosylanthranilate isomerase (PRAI) c	95.42
PRK06843	404	inosine 5-monophosphate dehydrogenase; Validated	95.41
PRK09517	755	multifunctional thiamine-phosphate pyrophosphoryla	95.2
PRK13307	391	bifunctional formaldehyde-activating enzyme/3-hexu	95.18
CHL00162	267	thiG thiamin biosynthesis protein G; Validated	95.12
PRK12290	437	thiE thiamine-phosphate pyrophosphorylase; Reviewe	95.06
PLN02274	505	inosine-5'-monophosphate dehydrogenase	95.06
PRK13111	258	trpA tryptophan synthase subunit alpha; Provisiona	94.93
TIGR01182	204	eda Entner-Doudoroff aldolase. 2-deydro-3-deoxypho	94.9
PF02581	180	TMP-TENI: Thiamine monophosphate synthase/TENI; In	94.85
PRK14114	241	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met	94.83
PTZ00314	495	inosine-5'-monophosphate dehydrogenase; Provisiona	94.8
TIGR01919	243	hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosy	94.79
PRK08999	312	hypothetical protein; Provisional	94.65
cd01568	269	QPRTase_NadC Quinolinate phosphoribosyl transferas	94.6
PRK05718	212	keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog	94.56
PRK13125	244	trpA tryptophan synthase subunit alpha; Provisiona	94.55
COG0107	256	HisF Imidazoleglycerol-phosphate synthase [Amino a	94.38
PRK05742	277	nicotinate-nucleotide pyrophosphorylase; Provision	94.31
PRK08649	368	inosine 5-monophosphate dehydrogenase; Validated	94.28
PLN02446	262	(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methy	94.23
TIGR01305	343	GMP_reduct_1 guanosine monophosphate reductase, eu	94.21
TIGR01302	450	IMP_dehydrog inosine-5'-monophosphate dehydrogenas	94.17
PF00218	254	IGPS: Indole-3-glycerol phosphate synthase; InterP	94.05
PRK06806	281	fructose-bisphosphate aldolase; Provisional	93.93
PRK08005	210	epimerase; Validated	93.88
TIGR02129	253	hisA_euk phosphoribosylformimino-5-aminoimidazole	93.85
PRK07226	267	fructose-bisphosphate aldolase; Provisional	93.83
TIGR01740	213	pyrF orotidine 5'-phosphate decarboxylase, subfami	93.82
PF05690	247	ThiG: Thiazole biosynthesis protein ThiG; InterPro	93.7
PRK13813	215	orotidine 5'-phosphate decarboxylase; Provisional	93.66
cd01572	268	QPRTase Quinolinate phosphoribosyl transferase (QA	93.62
PRK13306	216	ulaD 3-keto-L-gulonate-6-phosphate decarboxylase;	93.53
PRK07807	479	inosine 5-monophosphate dehydrogenase; Validated	93.5
TIGR01303	475	IMP_DH_rel_1 IMP dehydrogenase family protein. Thi	93.48
PRK11840	326	bifunctional sulfur carrier protein/thiazole synth	93.45
PF00478	352	IMPDH: IMP dehydrogenase / GMP reductase domain; I	93.39
PRK00507	221	deoxyribose-phosphate aldolase; Provisional	93.36
COG0269	217	SgbH 3-hexulose-6-phosphate synthase and related p	93.36
PRK08072	277	nicotinate-nucleotide pyrophosphorylase; Provision	93.35
PLN02617	538	imidazole glycerol phosphate synthase hisHF	93.32
PRK06015	201	keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog	93.28
COG3010	229	NanE Putative N-acetylmannosamine-6-phosphate epim	93.26
cd04724	242	Tryptophan_synthase_alpha Ttryptophan synthase (TR	93.2
PRK04128	228	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met	93.2
COG0106	241	HisA Phosphoribosylformimino-5-aminoimidazole carb	93.19
COG0036	220	Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate	93.13
TIGR00078	265	nadC nicotinate-nucleotide pyrophosphorylase. Syno	93.05
PF01645	368	Glu_synthase: Conserved region in glutamate syntha	92.99
cd01573	272	modD_like ModD; Quinolinate phosphoribosyl transfe	92.88
PRK05567	486	inosine 5'-monophosphate dehydrogenase; Reviewed	92.84
cd00311	242	TIM Triosephosphate isomerase (TIM) is a glycolyti	92.84
PF01081	196	Aldolase: KDPG and KHG aldolase; InterPro: IPR0008	92.75
PRK08745	223	ribulose-phosphate 3-epimerase; Provisional	92.74
PRK08091	228	ribulose-phosphate 3-epimerase; Validated	92.45
PRK00230	230	orotidine 5'-phosphate decarboxylase; Reviewed	92.33
PRK08649	368	inosine 5-monophosphate dehydrogenase; Validated	92.3
PRK14567	253	triosephosphate isomerase; Provisional	92.18
PF04309	175	G3P_antiterm: Glycerol-3-phosphate responsive anti	92.11
TIGR01304	369	IMP_DH_rel_2 IMP dehydrogenase family protein. Thi	92.0
PRK13957	247	indole-3-glycerol-phosphate synthase; Provisional	91.84
TIGR01306	321	GMP_reduct_2 guanosine monophosphate reductase, ba	91.82
PRK13586	232	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met	91.76
PRK07315	293	fructose-bisphosphate aldolase; Provisional	91.49
PF00290	259	Trp_syntA: Tryptophan synthase alpha chain; InterP	91.29
cd02068	127	radical_SAM_B12_BD B12 binding domain_like associa	91.23
PRK05848	273	nicotinate-nucleotide pyrophosphorylase; Provision	90.92
cd04743	320	NPD_PKS 2-Nitropropane dioxygenase (NPD)-like doma	90.61
PRK14057	254	epimerase; Provisional	90.59
PTZ00333	255	triosephosphate isomerase; Provisional	90.59
PRK07107	502	inosine 5-monophosphate dehydrogenase; Validated	90.58
cd00331	217	IGPS Indole-3-glycerol phosphate synthase (IGPS);	90.54
PRK07807	479	inosine 5-monophosphate dehydrogenase; Validated	90.54
PRK05096	346	guanosine 5'-monophosphate oxidoreductase; Provisi	90.47
PRK07428	288	nicotinate-nucleotide pyrophosphorylase; Provision	90.34
PRK07114	222	keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog	90.32
PRK13305	218	sgbH 3-keto-L-gulonate-6-phosphate decarboxylase;	90.18
PRK09427	454	bifunctional indole-3-glycerol phosphate synthase/	90.1
COG1954	181	GlpP Glycerol-3-phosphate responsive antiterminato	89.91
PRK14565	237	triosephosphate isomerase; Provisional	89.84
COG2022	262	ThiG Uncharacterized enzyme of thiazole biosynthes	89.84
TIGR01859	282	fruc_bis_ald_ fructose-1,6-bisphosphate aldolase,	89.68
PLN02274	505	inosine-5'-monophosphate dehydrogenase	89.39
PF01081	196	Aldolase: KDPG and KHG aldolase; InterPro: IPR0008	89.19
TIGR00259	257	thylakoid_BtpA membrane complex biogenesis protein	89.14
PLN02460	338	indole-3-glycerol-phosphate synthase	89.09
PRK09722	229	allulose-6-phosphate 3-epimerase; Provisional	89.07
cd04736	361	MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-bin	88.98
TIGR01182	204	eda Entner-Doudoroff aldolase. 2-deydro-3-deoxypho	88.77
PRK13802	695	bifunctional indole-3-glycerol phosphate synthase/	88.77
PRK06015	201	keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog	88.68
cd03332	383	LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-bindin	88.53
cd01571	302	NAPRTase_B Nicotinate phosphoribosyltransferase (N	88.49
PLN02979	366	glycolate oxidase	88.46
PLN02716	308	nicotinate-nucleotide diphosphorylase (carboxylati	88.33
PRK05096	346	guanosine 5'-monophosphate oxidoreductase; Provisi	88.28
PRK11197	381	lldD L-lactate dehydrogenase; Provisional	88.11
COG0134	254	TrpC Indole-3-glycerol phosphate synthase [Amino a	88.09
KOG1436	398	consensus Dihydroorotate dehydrogenase [Nucleotide	87.96
cd00516	281	PRTase_typeII Phosphoribosyltransferase (PRTase) t	87.58
PRK05458	326	guanosine 5'-monophosphate oxidoreductase; Provisi	87.48
PRK07107	502	inosine 5-monophosphate dehydrogenase; Validated	87.41
TIGR01303	475	IMP_DH_rel_1 IMP dehydrogenase family protein. Thi	87.38
KOG0538	363	consensus Glycolate oxidase [Energy production and	87.35
COG0159	265	TrpA Tryptophan synthase alpha chain [Amino acid t	87.16
PRK08385	278	nicotinate-nucleotide pyrophosphorylase; Provision	86.95
PRK00042	250	tpiA triosephosphate isomerase; Provisional	86.93
PF01729	169	QRPTase_C: Quinolinate phosphoribosyl transferase,	86.69
cd03315	265	MLE_like Muconate lactonizing enzyme (MLE) like su	86.65
PTZ00314	495	inosine-5'-monophosphate dehydrogenase; Provisiona	86.56
PLN02561	253	triosephosphate isomerase	86.51
PRK06801	286	hypothetical protein; Provisional	86.5
PLN02535	364	glycolate oxidase	86.46
PF03437	254	BtpA: BtpA family; InterPro: IPR005137 Photosystem	86.4
PRK05567	486	inosine 5'-monophosphate dehydrogenase; Reviewed	86.4
PLN02493	367	probable peroxisomal (S)-2-hydroxy-acid oxidase	86.35
PRK06106	281	nicotinate-nucleotide pyrophosphorylase; Provision	86.23
cd03316	357	MR_like Mandelate racemase (MR)-like subfamily of	86.21
cd00381	325	IMPDH IMPDH: The catalytic domain of the inosine m	85.55
PRK05718	212	keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog	85.2
PRK06843	404	inosine 5-monophosphate dehydrogenase; Validated	85.1
COG0800	211	Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Ca	85.06
PRK07896	289	nicotinate-nucleotide pyrophosphorylase; Provision	85.02
COG1058	255	CinA Predicted nucleotide-utilizing enzyme related	84.68
PRK06543	281	nicotinate-nucleotide pyrophosphorylase; Provision	84.15
cd04725	216	OMP_decarboxylase_like Orotidine 5'-phosphate deca	84.12
COG1908	132	FrhD Coenzyme F420-reducing hydrogenase, delta sub	83.59
PRK06552	213	keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog	83.21
PRK14905	355	triosephosphate isomerase/PTS system glucose/sucro	83.17
TIGR01302	450	IMP_dehydrog inosine-5'-monophosphate dehydrogenas	83.13
PRK06559	290	nicotinate-nucleotide pyrophosphorylase; Provision	82.84
PRK07188	352	nicotinate phosphoribosyltransferase; Provisional	82.64
cd04737	351	LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding d	82.48
PRK06978	294	nicotinate-nucleotide pyrophosphorylase; Provision	82.35
TIGR01334	277	modD putative molybdenum utilization protein ModD.	82.18
cd02809	299	alpha_hydroxyacid_oxid_FMN Family of homologous FM	82.15
PF01070	356	FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR	81.77
KOG1606	296	consensus Stationary phase-induced protein, SOR/SN	81.76
PF00478	352	IMPDH: IMP dehydrogenase / GMP reductase domain; I	81.71
cd03319	316	L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase cat	81.42
cd00945	201	Aldolase_Class_I Class I aldolases. The class I al	81.33
PRK15492	260	triosephosphate isomerase; Provisional	81.21
PF00834	201	Ribul_P_3_epim: Ribulose-phosphate 3 epimerase fam	81.21
PRK07114	222	keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog	80.98
cd02922	344	FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding dom	80.61

>PLN02411 12-oxophytodienoate reductase

Probab=99.83  E-value=2.3e-20  Score=147.72  Aligned_cols=82  Identities=60%  Similarity=1.119  Sum_probs=75.1

Q ss_pred             HHHHHHHHcCCeEEEeCCCCHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHhhCCCCCCCCccccccCCCCCCcccCCC
Q 046574           13 SLLLMRKAFKGTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEFNAPLNKYNRETFYVSDPVVGYTDYPF   92 (104)
Q Consensus        13 ~~~~ir~~~~~pvi~~Ggi~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~~g~~l~~~d~~~~~~~~~~~gy~d~p~   92 (104)
                      .++.||+.+++|||++|+|+++.|+++|++|.+|+|++||++|+|||||+|+++|++++++++.+||+.+...||+|||+
T Consensus       304 ~a~~ik~~v~~pvi~~G~i~~~~a~~~l~~g~aDlV~~gR~~iadPdl~~k~~~g~~l~~~~~~~~~~~~~~~gy~~~p~  383 (391)
T PLN02411        304 LMRTLRRAYQGTFMCSGGFTRELGMQAVQQGDADLVSYGRLFISNPDLVLRFKLNAPLNKYIRKTFYTQDPVVGYTDYPF  383 (391)
T ss_pred             HHHHHHHHcCCCEEEECCCCHHHHHHHHHcCCCCEEEECHHHHhCccHHHHHhcCCCCCCCChhheeCCCCCCCCCcccc
Confidence            56789999999999999998899999999999999999999999999999999999999999999996432359999998


Q ss_pred             CC
Q 046574           93 LD   94 (104)
Q Consensus        93 ~~   94 (104)
                      ++
T Consensus       384 ~~  385 (391)
T PLN02411        384 LS  385 (391)
T ss_pred             cc
Confidence            74

>PRK10605 N-ethylmaleimide reductase; Provisional

Probab=99.75  E-value=4.3e-18  Score=133.63  Aligned_cols=81  Identities=40%  Similarity=0.632  Sum_probs=74.3

Q ss_pred             hHHHHHHHHcCCeEEEeCCCCHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHhhCCCCCCCCccccccCCCCCCcccCC
Q 046574           12 HSLLLMRKAFKGTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEFNAPLNKYNRETFYVSDPVVGYTDYP   91 (104)
Q Consensus        12 ~~~~~ir~~~~~pvi~~Ggi~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~~g~~l~~~d~~~~~~~~~~~gy~d~p   91 (104)
                      ...+.||+.+++||+++|+++++.|+++|++|.+|+|++||++|+|||||+|+++|+++++++..+||.+. ..||++||
T Consensus       282 ~~~~~ik~~~~~pv~~~G~~~~~~ae~~i~~G~~D~V~~gR~~iadPd~~~k~~~g~~~~~~~~~~~~~~~-~~~~~~~~  360 (362)
T PRK10605        282 AFREKVRARFHGVIIGAGAYTAEKAETLIGKGLIDAVAFGRDYIANPDLVARLQRKAELNPQRPESFYGGG-AEGYTDYP  360 (362)
T ss_pred             HHHHHHHHHCCCCEEEeCCCCHHHHHHHHHcCCCCEEEECHHhhhCccHHHHHhcCCCCCCCChhhhcCCC-CCCCcCCC
Confidence            35678999999999999999999999999999999999999999999999999999999999988898754 47999999


Q ss_pred             CC
Q 046574           92 FL   93 (104)
Q Consensus        92 ~~   93 (104)
                      ++
T Consensus       361 ~~  362 (362)
T PRK10605        361 TL  362 (362)
T ss_pred             CC
Confidence            64

>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]

Probab=99.61  E-value=1.6e-15  Score=119.52  Aligned_cols=82  Identities=38%  Similarity=0.590  Sum_probs=70.1

Q ss_pred             hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHhhCCCCCCCCccccccCCCCCCcccC
Q 046574           12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEFNAPLNKYNRETFYVSDPVVGYTDY   90 (104)
Q Consensus        12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~~g~~l~~~d~~~~~~~~~~~gy~d~   90 (104)
                      ..+..++....+|||++|+| ++++|+++|++|.+|||+|||+||+|||||+|+++|++.  .++.++++.....||.++
T Consensus       278 ~~a~~i~~~~~~pvi~~G~i~~~~~Ae~~l~~g~aDlVa~gR~~ladP~~~~k~~~g~~~--~~~~~~~~~~~~~~~~~~  355 (363)
T COG1902         278 EFAARIKKAVRIPVIAVGGINDPEQAEEILASGRADLVAMGRPFLADPDLVLKAAEGREL--EIRPCIYCNQYCLGYTDY  355 (363)
T ss_pred             HHHHHHHHhcCCCEEEeCCCCCHHHHHHHHHcCCCCEEEechhhhcCccHHHHHHcCCCc--cccccccccchhhhcccc
Confidence            45667888889999999999 999999999999999999999999999999999999987  455667763225788888


Q ss_pred             CCCCC
Q 046574           91 PFLDT   95 (104)
Q Consensus        91 p~~~~   95 (104)
                      +....
T Consensus       356 ~~~~~  360 (363)
T COG1902         356 PLLKE  360 (363)
T ss_pred             ccchh
Confidence            87653

>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain

Probab=99.55  E-value=1.7e-14  Score=112.40  Aligned_cols=64  Identities=55%  Similarity=0.956  Sum_probs=60.1

Q ss_pred             hHHHHHHHHcCCeEEEeCCCCHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHhhCCCCCCCCc
Q 046574           12 HSLLLMRKAFKGTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEFNAPLNKYNR   75 (104)
Q Consensus        12 ~~~~~ir~~~~~pvi~~Ggi~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~~g~~l~~~d~   75 (104)
                      ..++.||+.+++|||++|+|+++.|+++|++|.+|+|++||++|+||||++|+++|+++..+++
T Consensus       275 ~~~~~ik~~~~ipvi~~G~i~~~~a~~~l~~g~~D~V~~gR~~ladP~~~~k~~~g~~~~~~~~  338 (338)
T cd02933         275 DFLDFLRKAFKGPLIAAGGYDAESAEAALADGKADLVAFGRPFIANPDLVERLKNGAPLNEYDR  338 (338)
T ss_pred             HHHHHHHHHcCCCEEEECCCCHHHHHHHHHcCCCCEEEeCHhhhhCcCHHHHHhcCCCCCCCCC
Confidence            4677899999999999999999999999999999999999999999999999999999988764

OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.

>KOG0134 consensus NADH:flavin oxidoreductase/12-oxophytodienoate reductase [Energy production and conversion; General function prediction only]

Probab=99.54  E-value=1.2e-14  Score=115.26  Aligned_cols=86  Identities=49%  Similarity=0.802  Sum_probs=77.5

Q ss_pred             hHHHHHHHHcCCeEEEeCCC--CHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHhhCCCCCCCCccccccCCCCCCccc
Q 046574           12 HSLLLMRKAFKGTFLVAGGY--DREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEFNAPLNKYNRETFYVSDPVVGYTD   89 (104)
Q Consensus        12 ~~~~~ir~~~~~pvi~~Ggi--~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~~g~~l~~~d~~~~~~~~~~~gy~d   89 (104)
                      +.++.+|..++++||..||.  +++.+.++|++|..|+|++||++++|||||.|++.|.+++.+++.++|......||+|
T Consensus       307 ~f~e~~r~~~kgt~v~a~g~~~t~~~~~eav~~~~T~~ig~GR~f~anPDLp~rl~~~~~~n~~d~~t~~~~~~~~g~~~  386 (400)
T KOG0134|consen  307 EFAETIRPVFKGTVVYAGGGGRTREAMVEAVKSGRTDLIGYGRPFLANPDLPKRLLNGLPLNKYDRSTFYTDMAVKGYAD  386 (400)
T ss_pred             hhhhHHHHHhcCcEEEecCCccCHHHHHHHHhcCCceeEEecchhccCCchhHHHHhCCCcccccccccccccchhcccc
Confidence            56677999999998888744  9999999999999999999999999999999999999999999999997655789999


Q ss_pred             CCCCCCcc
Q 046574           90 YPFLDTSS   97 (104)
Q Consensus        90 ~p~~~~~~   97 (104)
                      ||++++..
T Consensus       387 ~~~~~~~~  394 (400)
T KOG0134|consen  387 YPQMEQMA  394 (400)
T ss_pred             ChhHHHHH
Confidence            99887643

>PF00724 Oxidored_FMN: NADH:flavin oxidoreductase / NADH oxidase family; InterPro: IPR001155 The TIM-barrel fold is a closed barrel structure composed of an eight-fold repeat of beta-alpha units, where the eight parallel beta strands on the inside are covered by the eight alpha helices on the outside []

Probab=99.53  E-value=1.6e-14  Score=112.28  Aligned_cols=59  Identities=37%  Similarity=0.510  Sum_probs=54.4

Q ss_pred             hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHhhCCCC
Q 046574           12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEFNAPL   70 (104)
Q Consensus        12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~~g~~l   70 (104)
                      ..++.+|+.+++|||++|+| +++.|+++|++|.+|+|++||++|+|||||+|+++|++.
T Consensus       281 ~~a~~ik~~~~~pvi~~G~i~~~~~ae~~l~~g~~DlV~~gR~~ladPd~~~k~~~g~~d  340 (341)
T PF00724_consen  281 DLAEAIKKAVKIPVIGVGGIRTPEQAEKALEEGKADLVAMGRPLLADPDLPNKAREGRED  340 (341)
T ss_dssp             HHHHHHHHHHSSEEEEESSTTHHHHHHHHHHTTSTSEEEESHHHHH-TTHHHHHHHTTGG
T ss_pred             hhhhhhhhhcCceEEEEeeecchhhhHHHHhcCCceEeeccHHHHhCchHHHHHHcCCcc
Confidence            46788999999999999999 888899999999999999999999999999999999864

It is a widely distributed fold which has been found in many enzyme families that catalyse completely unrelated reactions []. The active site is always found at the C-terminal end of this domain. Proteins in this entry are a variety of NADH:flavin oxidoreductase/NADH oxidase enzymes, found mostly in bacteria or fungi, that contain a TIM-barrel fold. They commonly use FMN/FAD as cofactor and include: dimethylamine dehydrogenase trimethylamine dehydrogenase 12-oxophytodienoate reductase NADPH dehydrogenase NADH oxidase ; GO: 0010181 FMN binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GKA_B 3P67_A 3F03_K 2ABA_A 1VYR_A 1GVO_A 3KFT_B 3P8I_A 1GVQ_A 3P74_A ....

>cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain

Probab=99.43  E-value=3.1e-13  Score=106.33  Aligned_cols=58  Identities=16%  Similarity=0.251  Sum_probs=54.5

Q ss_pred             hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHhhCCC
Q 046574           12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEFNAP   69 (104)
Q Consensus        12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~~g~~   69 (104)
                      ..++.+|+.+++|||++|++ +++.|+++|++|.+|+|++||++|+||||++|+++|+.
T Consensus       279 ~~~~~ik~~~~~pvi~~G~i~~~~~~~~~l~~g~~D~V~~gR~~ladP~l~~k~~~g~~  337 (370)
T cd02929         279 PYIKFVKQVTSKPVVGVGRFTSPDKMVEVVKSGILDLIGAARPSIADPFLPKKIREGRI  337 (370)
T ss_pred             HHHHHHHHHCCCCEEEeCCCCCHHHHHHHHHcCCCCeeeechHhhhCchHHHHHHcCCc
Confidence            35677999999999999999 99999999999999999999999999999999999984

TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine.

>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain

Probab=99.41  E-value=5.7e-13  Score=105.25  Aligned_cols=58  Identities=28%  Similarity=0.393  Sum_probs=54.8

Q ss_pred             hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHhhCCC
Q 046574           12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEFNAP   69 (104)
Q Consensus        12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~~g~~   69 (104)
                      ..++.+|+.+++|||++|++ +++.|+++|++|.+|+|++||++|+||||++|+++|+.
T Consensus       295 ~~~~~ik~~~~~pvi~~G~i~~~~~~~~~l~~g~~D~V~~gR~~ladP~l~~k~~~g~~  353 (382)
T cd02931         295 PYCKALKEVVDVPVIMAGRMEDPELASEAINEGIADMISLGRPLLADPDVVNKIRRGRF  353 (382)
T ss_pred             HHHHHHHHHCCCCEEEeCCCCCHHHHHHHHHcCCCCeeeechHhHhCccHHHHHHcCCc
Confidence            35677999999999999999 99999999999999999999999999999999999984

Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.

>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5

Probab=99.40  E-value=5.8e-13  Score=104.87  Aligned_cols=65  Identities=18%  Similarity=0.204  Sum_probs=58.1

Q ss_pred             hHHHHHHHHcCCeEEEeCCC-------------------CHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHhhCCC--C
Q 046574           12 HSLLLMRKAFKGTFLVAGGY-------------------DREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEFNAP--L   70 (104)
Q Consensus        12 ~~~~~ir~~~~~pvi~~Ggi-------------------~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~~g~~--l   70 (104)
                      ..++.+|+.+++|||++|+|                   +++.|+++|++|.+|+|++||++|+||+|++|+++|++  +
T Consensus       270 ~~~~~~k~~~~~pv~~~G~i~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~g~~D~V~~gR~~iadP~~~~k~~~g~~~~I  349 (361)
T cd04747         270 NLAGWTKKLTGLPTITVGSVGLDGDFIGAFAGDEGASPASLDRLLERLERGEFDLVAVGRALLSDPAWVAKVREGRLDEL  349 (361)
T ss_pred             hHHHHHHHHcCCCEEEECCcccccccccccccccccccCCHHHHHHHHHCCCCCeehhhHHHHhCcHHHHHHHcCCcccc
Confidence            35667899999999999997                   88999999999999999999999999999999999984  6


Q ss_pred             CCCCcc
Q 046574           71 NKYNRE   76 (104)
Q Consensus        71 ~~~d~~   76 (104)
                      .++|++
T Consensus       350 r~~~~~  355 (361)
T cd04747         350 IPFSRA  355 (361)
T ss_pred             cCCCHH
Confidence            666654

Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.

>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3

Probab=99.39  E-value=8.6e-13  Score=102.89  Aligned_cols=58  Identities=24%  Similarity=0.308  Sum_probs=54.5

Q ss_pred             hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHhhCCC
Q 046574           12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEFNAP   69 (104)
Q Consensus        12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~~g~~   69 (104)
                      ..++.+++.+++|||++|+| ++++|++++++|.+|+|++||++|+||||++++++|++
T Consensus       275 ~~~~~ik~~~~ipvi~~G~i~~~~~~~~~l~~~~~D~V~~gR~~ladP~l~~k~~~g~~  333 (343)
T cd04734         275 PLAARIKQAVDLPVFHAGRIRDPAEAEQALAAGHADMVGMTRAHIADPHLVAKAREGRE  333 (343)
T ss_pred             HHHHHHHHHcCCCEEeeCCCCCHHHHHHHHHcCCCCeeeecHHhHhCccHHHHHHcCCc
Confidence            45677999999999999999 99999999999999999999999999999999999985

Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.

>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2

Probab=99.39  E-value=8.6e-13  Score=102.34  Aligned_cols=56  Identities=29%  Similarity=0.433  Sum_probs=52.6

Q ss_pred             hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHhhC
Q 046574           12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEFN   67 (104)
Q Consensus        12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~~g   67 (104)
                      ..++.||+.+++|||++|++ +++.|+++|++|.+|+|++||++|+||+|++|+++|
T Consensus       282 ~~~~~ik~~v~iPVi~~G~i~t~~~a~~~l~~g~aD~V~lgR~~iadP~~~~k~~~g  338 (338)
T cd04733         282 EFAEKIRKVTKTPLMVTGGFRTRAAMEQALASGAVDGIGLARPLALEPDLPNKLLAG  338 (338)
T ss_pred             HHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHcCCCCeeeeChHhhhCccHHHHHhcC
Confidence            45567999999999999999 999999999999999999999999999999999986

Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.

>PRK13523 NADPH dehydrogenase NamA; Provisional

Probab=99.36  E-value=9.5e-13  Score=102.67  Aligned_cols=59  Identities=22%  Similarity=0.226  Sum_probs=55.1

Q ss_pred             hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHhhCCCC
Q 046574           12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEFNAPL   70 (104)
Q Consensus        12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~~g~~l   70 (104)
                      ..++.+|+.+++|||++|++ +++.|+++|++|.+|+|++||++|+||||++|++++...
T Consensus       265 ~~~~~ik~~~~ipVi~~G~i~~~~~a~~~l~~g~~D~V~~gR~~iadP~~~~k~~~~~~~  324 (337)
T PRK13523        265 PFAEHIREHANIATGAVGLITSGAQAEEILQNNRADLIFIGRELLRNPYFPRIAAKELGF  324 (337)
T ss_pred             HHHHHHHhhcCCcEEEeCCCCCHHHHHHHHHcCCCChHHhhHHHHhCccHHHHHHHHcCC
Confidence            46678999999999999999 999999999999999999999999999999999998755

>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain

Probab=99.30  E-value=4.4e-12  Score=98.97  Aligned_cols=57  Identities=23%  Similarity=0.365  Sum_probs=54.0

Q ss_pred             HHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHhhCCC
Q 046574           13 SLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEFNAP   69 (104)
Q Consensus        13 ~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~~g~~   69 (104)
                      ..+.+|+.+++|||++|++ ++++++++|++|.+|+|++||++|+||||++|+++|+.
T Consensus       267 ~~~~ik~~v~iPVi~~G~i~~~~~a~~~i~~g~~D~V~~gR~~l~dP~~~~k~~~g~~  324 (353)
T cd02930         267 ATAKLKRAVDIPVIASNRINTPEVAERLLADGDADMVSMARPFLADPDFVAKAAAGRA  324 (353)
T ss_pred             HHHHHHHhCCCCEEEcCCCCCHHHHHHHHHCCCCChhHhhHHHHHCccHHHHHHhCCc
Confidence            4567999999999999999 99999999999999999999999999999999999985

DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi

>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain

Probab=99.29  E-value=8.8e-12  Score=95.43  Aligned_cols=56  Identities=39%  Similarity=0.581  Sum_probs=52.3

Q ss_pred             hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHhhC
Q 046574           12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEFN   67 (104)
Q Consensus        12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~~g   67 (104)
                      ..++.+++.+++|||++|+| ++++++++|++|.+|+|++||++|+||||++|+++|
T Consensus       271 ~~~~~ir~~~~iPVi~~Ggi~t~~~a~~~l~~g~aD~V~igR~~ladP~l~~k~~~g  327 (327)
T cd02803         271 ELAEKIKKAVKIPVIAVGGIRDPEVAEEILAEGKADLVALGRALLADPDLPNKAREG  327 (327)
T ss_pred             HHHHHHHHHCCCCEEEeCCCCCHHHHHHHHHCCCCCeeeecHHHHhCccHHHHHhcC
Confidence            46677999999999999999 899999999998899999999999999999999876

OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.

>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain

Probab=99.23  E-value=2.1e-11  Score=94.44  Aligned_cols=55  Identities=29%  Similarity=0.334  Sum_probs=51.4

Q ss_pred             hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHhh
Q 046574           12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEF   66 (104)
Q Consensus        12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~~   66 (104)
                      ..++.+++.+++|||++|++ ++++++++|++|.+|+|++||++|+||||++|+++
T Consensus       280 ~~~~~ir~~~~iPVi~~G~i~t~~~a~~~l~~g~aD~V~~gR~~i~dP~~~~k~~~  335 (336)
T cd02932         280 PFAERIRQEAGIPVIAVGLITDPEQAEAILESGRADLVALGRELLRNPYWPLHAAA  335 (336)
T ss_pred             HHHHHHHhhCCCCEEEeCCCCCHHHHHHHHHcCCCCeehhhHHHHhCccHHHHHhh
Confidence            45677999999999999999 99999999999999999999999999999999875

YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.

>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4

Probab=99.22  E-value=1.7e-11  Score=95.87  Aligned_cols=58  Identities=24%  Similarity=0.399  Sum_probs=52.3

Q ss_pred             hHHHHHHHHc--CCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHhhCCCC
Q 046574           12 HSLLLMRKAF--KGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEFNAPL   70 (104)
Q Consensus        12 ~~~~~ir~~~--~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~~g~~l   70 (104)
                      ...+.+++.+  ++|||++|+| +++.|+++|++| +|+|++||++|+||||++|+++|++.
T Consensus       272 ~~~~~ik~~~~~~iPVi~~Ggi~t~e~ae~~l~~g-aD~V~~gR~liadPdl~~k~~~G~~~  332 (353)
T cd04735         272 TIMELVKERIAGRLPLIAVGSINTPDDALEALETG-ADLVAIGRGLLVDPDWVEKIKEGRED  332 (353)
T ss_pred             HHHHHHHHHhCCCCCEEEECCCCCHHHHHHHHHcC-CChHHHhHHHHhCccHHHHHHcCChh
Confidence            3456788887  6799999999 999999999996 99999999999999999999999864

Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.

>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed

Probab=99.13  E-value=1.7e-10  Score=97.77  Aligned_cols=60  Identities=23%  Similarity=0.213  Sum_probs=55.2

Q ss_pred             hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHhhCCCCC
Q 046574           12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEFNAPLN   71 (104)
Q Consensus        12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~~g~~l~   71 (104)
                      ..++.+|+.+++|||++|+| +++.|+++|++|.+|+|++||++|+||+|+.+........
T Consensus       677 ~~~~~ik~~~~~pv~~~G~i~~~~~a~~~l~~g~~D~v~~gR~~l~dP~~~~~~~~~~~~~  737 (765)
T PRK08255        677 PFADRIRNEAGIATIAVGAISEADHVNSIIAAGRADLCALARPHLADPAWTLHEAAEIGYR  737 (765)
T ss_pred             HHHHHHHHHcCCEEEEeCCCCCHHHHHHHHHcCCcceeeEcHHHHhCccHHHHHHHHcCCC
Confidence            45678999999999999999 9999999999999999999999999999999998877664

>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain

Probab=99.05  E-value=4.6e-10  Score=81.73  Aligned_cols=56  Identities=23%  Similarity=0.240  Sum_probs=50.6

Q ss_pred             hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHhhC
Q 046574           12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEFN   67 (104)
Q Consensus        12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~~g   67 (104)
                      +....+++..++|||++||+ ++++++++++.+.+|+|++||++++||+|++++++.
T Consensus       173 ~~~~~i~~~~~ipvi~~Ggi~~~~d~~~~l~~~gad~V~igr~~l~~P~~~~~~~~~  229 (231)
T cd02801         173 DYIAEIKEAVSIPVIANGDIFSLEDALRCLEQTGVDGVMIGRGALGNPWLFREIKEL  229 (231)
T ss_pred             HHHHHHHhCCCCeEEEeCCCCCHHHHHHHHHhcCCCEEEEcHHhHhCCHHHHhhhhc
Confidence            34567888888999999999 999999999987799999999999999999998764

Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.

>PRK10550 tRNA-dihydrouridine synthase C; Provisional

Probab=99.00  E-value=1.1e-09  Score=84.84  Aligned_cols=57  Identities=23%  Similarity=0.353  Sum_probs=52.8

Q ss_pred             hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHhhCC
Q 046574           12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEFNA   68 (104)
Q Consensus        12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~~g~   68 (104)
                      +....+++.+++|||++|+| |+++|+++++.+.+|.|.+||++|.||.|.++++.|.
T Consensus       184 ~~i~~ik~~~~iPVi~nGdI~t~~da~~~l~~~g~DgVmiGRg~l~nP~lf~~~~~g~  241 (312)
T PRK10550        184 QAIGEIRQRLTIPVIANGEIWDWQSAQQCMAITGCDAVMIGRGALNIPNLSRVVKYNE  241 (312)
T ss_pred             HHHHHHHhhcCCcEEEeCCcCCHHHHHHHHhccCCCEEEEcHHhHhCcHHHHHhhcCC
Confidence            35678899999999999999 9999999999888999999999999999999998876

>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed

Probab=98.90  E-value=2.9e-09  Score=81.19  Aligned_cols=56  Identities=20%  Similarity=0.163  Sum_probs=51.6

Q ss_pred             hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHhhCC
Q 046574           12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEFNA   68 (104)
Q Consensus        12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~~g~   68 (104)
                      .....+++.++.|||++||| ++++|++++..| +|+|.+||+++.||+++++++++.
T Consensus       224 ~~v~~i~~~~~ipvi~~GGI~~~~da~~~l~aG-Ad~V~igr~ll~~P~~~~~i~~~l  280 (301)
T PRK07259        224 RMVYQVYQAVDIPIIGMGGISSAEDAIEFIMAG-ASAVQVGTANFYDPYAFPKIIEGL  280 (301)
T ss_pred             HHHHHHHHhCCCCEEEECCCCCHHHHHHHHHcC-CCceeEcHHHhcCcHHHHHHHHHH
Confidence            35567888889999999999 999999999999 899999999999999999999876

>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein

Probab=98.88  E-value=3.7e-09  Score=80.48  Aligned_cols=55  Identities=16%  Similarity=0.071  Sum_probs=50.5

Q ss_pred             HHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHhhCC
Q 046574           13 SLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEFNA   68 (104)
Q Consensus        13 ~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~~g~   68 (104)
                      ....+++.+++|||++||| ++++|++++..| +|+|.+||+++.||+|+++++.+.
T Consensus       225 ~v~~i~~~~~ipvi~~GGI~s~~da~~~l~~G-Ad~V~igr~~l~~p~~~~~i~~~l  280 (300)
T TIGR01037       225 MVYDVYKMVDIPIIGVGGITSFEDALEFLMAG-ASAVQVGTAVYYRGFAFKKIIEGL  280 (300)
T ss_pred             HHHHHHhcCCCCEEEECCCCCHHHHHHHHHcC-CCceeecHHHhcCchHHHHHHHHH
Confidence            4556788888999999999 999999999988 999999999999999999998876

This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.

>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family

Probab=98.86  E-value=6.6e-09  Score=80.02  Aligned_cols=55  Identities=25%  Similarity=0.284  Sum_probs=50.0

Q ss_pred             hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHhh
Q 046574           12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEF   66 (104)
Q Consensus        12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~~   66 (104)
                      +....+++.+++|||++||| ++++++++++.+.+|+|.+||++++||.|.++++.
T Consensus       182 ~~i~~i~~~~~ipvi~nGgI~~~~da~~~l~~~gad~VmigR~~l~~P~l~~~~~~  237 (319)
T TIGR00737       182 DIIARVKQAVRIPVIGNGDIFSPEDAKAMLETTGCDGVMIGRGALGNPWLFRQIEQ  237 (319)
T ss_pred             HHHHHHHHcCCCcEEEeCCCCCHHHHHHHHHhhCCCEEEEChhhhhCChHHHHHHH
Confidence            35567888889999999999 99999999987779999999999999999999875

Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.

>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain

Probab=98.86  E-value=6e-09  Score=79.09  Aligned_cols=57  Identities=19%  Similarity=0.218  Sum_probs=51.5

Q ss_pred             hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHhhCCC
Q 046574           12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEFNAP   69 (104)
Q Consensus        12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~~g~~   69 (104)
                      .....+++.+++|||++||| ++++|++++..| +|+|.+||+++.||+++++++.+..
T Consensus       221 ~~i~~i~~~~~ipii~~GGI~~~~da~~~l~~G-Ad~V~igra~l~~p~~~~~i~~~l~  278 (296)
T cd04740         221 RMVYQVYKAVEIPIIGVGGIASGEDALEFLMAG-ASAVQVGTANFVDPEAFKEIIEGLE  278 (296)
T ss_pred             HHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcC-CCEEEEchhhhcChHHHHHHHHHHH
Confidence            34566788888999999999 999999999999 8999999999999999999998763

DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.

>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain

Probab=98.74  E-value=2e-08  Score=75.76  Aligned_cols=54  Identities=19%  Similarity=0.253  Sum_probs=48.8

Q ss_pred             HHHHHHHHc--CCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhC-CcHHHHHhhC
Q 046574           13 SLLLMRKAF--KGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLAN-PDLPRRFEFN   67 (104)
Q Consensus        13 ~~~~ir~~~--~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lan-Pdl~~ri~~g   67 (104)
                      ....+++.+  +.|||++||| +++++.+++..| +|+|.+||+++.| |+++++++++
T Consensus       232 ~v~~i~~~~~~~ipiia~GGI~~~~da~~~l~~G-Ad~V~vg~a~~~~GP~~~~~i~~~  289 (289)
T cd02810         232 WVARLAARLQLDIPIIGVGGIDSGEDVLEMLMAG-ASAVQVATALMWDGPDVIRKIKKE  289 (289)
T ss_pred             HHHHHHHhcCCCCCEEEECCCCCHHHHHHHHHcC-ccHheEcHHHHhcCccHHHHHhcC
Confidence            456788888  7899999999 899999999999 9999999999999 9999998753

DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of

>PRK10415 tRNA-dihydrouridine synthase B; Provisional

Probab=98.70  E-value=5.9e-08  Score=75.27  Aligned_cols=55  Identities=16%  Similarity=0.215  Sum_probs=49.8

Q ss_pred             hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHhh
Q 046574           12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEF   66 (104)
Q Consensus        12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~~   66 (104)
                      +....+++.+++|||++||| |+++++++++.+.+|.|.+||+++.||.+..++.+
T Consensus       184 ~~i~~ik~~~~iPVI~nGgI~s~~da~~~l~~~gadgVmiGR~~l~nP~if~~~~~  239 (321)
T PRK10415        184 DSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQH  239 (321)
T ss_pred             HHHHHHHHhcCCcEEEeCCCCCHHHHHHHHhccCCCEEEEChHhhcCChHHHHHHH
Confidence            35567888889999999999 99999999987779999999999999999988875

>PRK11815 tRNA-dihydrouridine synthase A; Provisional

Probab=98.55  E-value=2.2e-07  Score=72.38  Aligned_cols=52  Identities=23%  Similarity=0.346  Sum_probs=46.7

Q ss_pred             HHHHHHHHc-CCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHhh
Q 046574           13 SLLLMRKAF-KGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEF   66 (104)
Q Consensus        13 ~~~~ir~~~-~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~~   66 (104)
                      ....+++.+ ++|||++||| ++++++++++ + +|.|.+||+++.||.+.++++.
T Consensus       195 ~i~~v~~~~~~iPVI~nGgI~s~eda~~~l~-~-aDgVmIGRa~l~nP~~~~~~~~  248 (333)
T PRK11815        195 RVYRLKRDFPHLTIEINGGIKTLEEAKEHLQ-H-VDGVMIGRAAYHNPYLLAEVDR  248 (333)
T ss_pred             HHHHHHHhCCCCeEEEECCcCCHHHHHHHHh-c-CCEEEEcHHHHhCCHHHHHHHH
Confidence            456678876 7899999999 9999999996 4 9999999999999999999876

>PRK05286 dihydroorotate dehydrogenase 2; Reviewed

Probab=98.43  E-value=2.6e-07  Score=72.20  Aligned_cols=55  Identities=22%  Similarity=0.265  Sum_probs=48.5

Q ss_pred             HHHHHHHHc--CCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhC-CcHHHHHhhCC
Q 046574           13 SLLLMRKAF--KGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLAN-PDLPRRFEFNA   68 (104)
Q Consensus        13 ~~~~ir~~~--~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lan-Pdl~~ri~~g~   68 (104)
                      ....+++.+  ++|||++||| ++++|.+.+..| +|+|.+||+++.+ |+++.++.++.
T Consensus       278 ~v~~l~~~~~~~ipIig~GGI~s~eda~e~l~aG-Ad~V~v~~~~~~~gP~~~~~i~~~L  336 (344)
T PRK05286        278 VIRRLYKELGGRLPIIGVGGIDSAEDAYEKIRAG-ASLVQIYSGLIYEGPGLVKEIVRGL  336 (344)
T ss_pred             HHHHHHHHhCCCCCEEEECCCCCHHHHHHHHHcC-CCHHHHHHHHHHhCchHHHHHHHHH
Confidence            455678887  5799999999 999999999988 8999999999985 99999998754

>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2

Probab=98.42  E-value=5.1e-07  Score=70.04  Aligned_cols=55  Identities=27%  Similarity=0.292  Sum_probs=48.6

Q ss_pred             hHHHHHHHHc--CCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhC-CcHHHHHhhC
Q 046574           12 HSLLLMRKAF--KGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLAN-PDLPRRFEFN   67 (104)
Q Consensus        12 ~~~~~ir~~~--~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lan-Pdl~~ri~~g   67 (104)
                      +....+++.+  +.|||++||| |+++|.+.+..| +|+|.+||+++.+ |+++.++.++
T Consensus       268 ~~v~~l~~~~~~~ipIi~~GGI~t~~da~e~l~aG-Ad~V~vg~~~~~~gP~~~~~i~~~  326 (327)
T cd04738         268 EVLRELYKLTGGKIPIIGVGGISSGEDAYEKIRAG-ASLVQLYTGLVYEGPGLVKRIKRE  326 (327)
T ss_pred             HHHHHHHHHhCCCCcEEEECCCCCHHHHHHHHHcC-CCHHhccHHHHhhCcHHHHHHHhc
Confidence            3456688888  6799999999 999999999988 8999999999986 9999999765

DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.

>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF)

Probab=98.33  E-value=1.6e-06  Score=64.14  Aligned_cols=55  Identities=24%  Similarity=0.294  Sum_probs=50.1

Q ss_pred             hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHhhC
Q 046574           12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEFN   67 (104)
Q Consensus        12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~~g   67 (104)
                      ...+.+++.+++||+++||| +.+++++++..| +|.|.+|+.++.||+++.++.+.
T Consensus        61 ~~i~~i~~~~~~pv~~~GGI~s~~d~~~~l~~G-~~~v~ig~~~~~~p~~~~~i~~~  116 (243)
T cd04731          61 DVVERVAEEVFIPLTVGGGIRSLEDARRLLRAG-ADKVSINSAAVENPELIREIAKR  116 (243)
T ss_pred             HHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcC-CceEEECchhhhChHHHHHHHHH
Confidence            46677888888999999999 999999999988 89999999999999999998774

Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.

>TIGR00742 yjbN tRNA dihydrouridine synthase A

Probab=98.25  E-value=3.2e-06  Score=65.77  Aligned_cols=52  Identities=25%  Similarity=0.339  Sum_probs=45.7

Q ss_pred             HHHHHHHHc-CCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHhh
Q 046574           13 SLLLMRKAF-KGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEF   66 (104)
Q Consensus        13 ~~~~ir~~~-~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~~   66 (104)
                      ....+++.+ ++|||+||+| |++++++.+. | +|.|.+||+++.||.+..++.+
T Consensus       185 ~i~~vk~~~~~ipVi~NGdI~s~~da~~~l~-g-~dgVMigRgal~nP~if~~~~~  238 (318)
T TIGR00742       185 RVYQLKKDFPHLTIEINGGIKNSEQIKQHLS-H-VDGVMVGREAYENPYLLANVDR  238 (318)
T ss_pred             HHHHHHHhCCCCcEEEECCcCCHHHHHHHHh-C-CCEEEECHHHHhCCHHHHHHHH
Confidence            345677777 7899999999 9999999995 5 9999999999999999988876

Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.

>PRK07565 dihydroorotate dehydrogenase 2; Reviewed

Probab=98.24  E-value=2.3e-06  Score=66.40  Aligned_cols=55  Identities=22%  Similarity=0.291  Sum_probs=48.2

Q ss_pred             HHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhC-CcHHHHHhhCCC
Q 046574           14 LLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLAN-PDLPRRFEFNAP   69 (104)
Q Consensus        14 ~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lan-Pdl~~ri~~g~~   69 (104)
                      ...+++.++.|||++||| |+++|.+.+..| +|+|.+||+++.+ |+++.++..+..
T Consensus       231 v~~~~~~~~ipIig~GGI~s~~Da~e~l~aG-A~~V~v~t~~~~~g~~~~~~i~~~L~  287 (334)
T PRK07565        231 IAILSGRVGADLAATTGVHDAEDVIKMLLAG-ADVVMIASALLRHGPDYIGTILRGLE  287 (334)
T ss_pred             HHHHHhhcCCCEEEECCCCCHHHHHHHHHcC-CCceeeehHHhhhCcHHHHHHHHHHH
Confidence            344667778899999999 999999999988 8999999999996 999999888763

>cd04732 HisA HisA

Probab=98.24  E-value=3.6e-06  Score=61.47  Aligned_cols=56  Identities=23%  Similarity=0.259  Sum_probs=50.7

Q ss_pred             hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHhhCC
Q 046574           12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEFNA   68 (104)
Q Consensus        12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~~g~   68 (104)
                      .....+++.++.||++.||| ++++++++++.| +|.|.+|+..+.||++..++.+..
T Consensus        63 ~~i~~i~~~~~~pv~~~GgI~~~e~~~~~~~~G-ad~vvigs~~l~dp~~~~~i~~~~  119 (234)
T cd04732          63 ELIEEIVKAVGIPVQVGGGIRSLEDIERLLDLG-VSRVIIGTAAVKNPELVKELLKEY  119 (234)
T ss_pred             HHHHHHHHhcCCCEEEeCCcCCHHHHHHHHHcC-CCEEEECchHHhChHHHHHHHHHc
Confidence            46677888888999999999 999999999999 999999999999999999988753

Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.

>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional

Probab=98.14  E-value=7.8e-06  Score=60.99  Aligned_cols=56  Identities=23%  Similarity=0.234  Sum_probs=50.0

Q ss_pred             hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHhhCC
Q 046574           12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEFNA   68 (104)
Q Consensus        12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~~g~   68 (104)
                      +..+.+++.+++||+++||+ +.+++++++..| +|.|.+|+.++.||+++.++...-
T Consensus        64 ~~i~~i~~~~~ipv~~~GGi~s~~~~~~~l~~G-a~~Viigt~~l~~p~~~~ei~~~~  120 (253)
T PRK02083         64 DVVERVAEQVFIPLTVGGGIRSVEDARRLLRAG-ADKVSINSAAVANPELISEAADRF  120 (253)
T ss_pred             HHHHHHHHhCCCCEEeeCCCCCHHHHHHHHHcC-CCEEEEChhHhhCcHHHHHHHHHc
Confidence            35566777788899999999 999999999987 899999999999999999998853

>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit

Probab=98.12  E-value=9.5e-06  Score=60.76  Aligned_cols=54  Identities=24%  Similarity=0.234  Sum_probs=48.7

Q ss_pred             HHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHhhC
Q 046574           13 SLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEFN   67 (104)
Q Consensus        13 ~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~~g   67 (104)
                      ....+++.++.||++.||+ +.+++++++..| +|.|.+|+.++.||++++++.+.
T Consensus        65 ~i~~i~~~~~~pv~~~GGi~s~~d~~~~~~~G-a~~vivgt~~~~~p~~~~~~~~~  119 (254)
T TIGR00735        65 VVERTAETVFIPLTVGGGIKSIEDVDKLLRAG-ADKVSINTAAVKNPELIYELADR  119 (254)
T ss_pred             HHHHHHHhcCCCEEEECCCCCHHHHHHHHHcC-CCEEEEChhHhhChHHHHHHHHH
Confidence            4566777788899999999 999999999988 89999999999999999998764

>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]

Probab=98.12  E-value=7.6e-06  Score=63.79  Aligned_cols=53  Identities=26%  Similarity=0.282  Sum_probs=48.5

Q ss_pred             hHHHHHHHHcC-CeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHHHHH
Q 046574           12 HSLLLMRKAFK-GTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLPRRF   64 (104)
Q Consensus        12 ~~~~~ir~~~~-~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri   64 (104)
                      +....+++.++ +|||+||+| |+++|.+.++...+|.|.+||+.+.||.+...+
T Consensus       187 ~~I~~vk~~~~~ipvi~NGdI~s~~~a~~~l~~tg~DgVMigRga~~nP~l~~~i  241 (323)
T COG0042         187 DYIKELKEAVPSIPVIANGDIKSLEDAKEMLEYTGADGVMIGRGALGNPWLFRQI  241 (323)
T ss_pred             HHHHHHHHhCCCCeEEeCCCcCCHHHHHHHHHhhCCCEEEEcHHHccCCcHHHHH
Confidence            46678999998 899999999 999999999988899999999999999988874

>TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2

Probab=98.11  E-value=4.6e-06  Score=65.20  Aligned_cols=54  Identities=19%  Similarity=0.212  Sum_probs=46.7

Q ss_pred             HHHHHHHHcC--CeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhC-CcHHHHHhhC
Q 046574           13 SLLLMRKAFK--GTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLAN-PDLPRRFEFN   67 (104)
Q Consensus        13 ~~~~ir~~~~--~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lan-Pdl~~ri~~g   67 (104)
                      ....+++..+  .|+|++||| ++++|.+.+..| +|+|.+|+.++.+ |+|+.++.++
T Consensus       277 ~v~~~~~~~~~~ipiig~GGI~~~~da~e~l~aG-A~~Vqv~ta~~~~Gp~~~~~i~~~  334 (335)
T TIGR01036       277 IIRRLYAELQGRLPIIGVGGISSAQDALEKIRAG-ASLLQIYSGFIYWGPPLVKEIVKE  334 (335)
T ss_pred             HHHHHHHHhCCCCCEEEECCCCCHHHHHHHHHcC-CcHHHhhHHHHHhCchHHHHHHhh
Confidence            3445666663  699999999 999999999999 8999999999995 9999999865

The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region.

>cd02911 arch_FMN Archeal FMN-binding domain

Probab=98.11  E-value=6.7e-06  Score=61.33  Aligned_cols=48  Identities=17%  Similarity=0.143  Sum_probs=41.1

Q ss_pred             HHHHHH-cCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHh
Q 046574           15 LLMRKA-FKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLPRRFE   65 (104)
Q Consensus        15 ~~ir~~-~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~   65 (104)
                      ..|++. .++|||++||| +++++++.+..| +|+|.+||+  .||-+.+.+.
T Consensus       183 ~~I~~i~~~ipVIgnGgI~s~eda~~~l~~G-aD~VmiGR~--~~p~~~~~~~  232 (233)
T cd02911         183 KKIRDISTELFIIGNNSVTTIESAKEMFSYG-ADMVSVARA--SLPENIEWLV  232 (233)
T ss_pred             HHHHHhcCCCEEEEECCcCCHHHHHHHHHcC-CCEEEEcCC--CCchHHHHhh
Confidence            456665 57899999999 999999999988 999999999  9997766553

This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.

>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins

Probab=98.09  E-value=7.3e-06  Score=63.68  Aligned_cols=54  Identities=26%  Similarity=0.374  Sum_probs=47.5

Q ss_pred             HHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhC-CcHHHHHhhCC
Q 046574           14 LLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLAN-PDLPRRFEFNA   68 (104)
Q Consensus        14 ~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lan-Pdl~~ri~~g~   68 (104)
                      ...+++..++|||++||| |+++|.+.|..| +|+|.+|++++.+ |+++.++..+.
T Consensus       229 v~~v~~~~~ipIig~GGI~s~~Da~e~l~aG-A~~Vqv~ta~~~~gp~~~~~i~~~L  284 (325)
T cd04739         229 IAILSGRVKASLAASGGVHDAEDVVKYLLAG-ADVVMTTSALLRHGPDYIGTLLAGL  284 (325)
T ss_pred             HHHHHcccCCCEEEECCCCCHHHHHHHHHcC-CCeeEEehhhhhcCchHHHHHHHHH
Confidence            345666667899999999 999999999988 8999999999995 99999998866

DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.

>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA

Probab=98.02  E-value=3.8e-06  Score=64.85  Aligned_cols=58  Identities=26%  Similarity=0.362  Sum_probs=45.4

Q ss_pred             hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHHH---HHhhCCC
Q 046574           12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLPR---RFEFNAP   69 (104)
Q Consensus        12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~---ri~~g~~   69 (104)
                      +....+++.+++|||+||+| |++++++.++.-.+|.|.+||+++.||.+-.   .+..|..
T Consensus       173 ~~i~~i~~~~~ipvi~NGdI~s~~d~~~~~~~tg~dgvMigRgal~nP~lf~~~~~~~~~~~  234 (309)
T PF01207_consen  173 EAIAEIKEALPIPVIANGDIFSPEDAERMLEQTGADGVMIGRGALGNPWLFREIDQIKEGEP  234 (309)
T ss_dssp             HHHHHCHHC-TSEEEEESS--SHHHHHHHCCCH-SSEEEESHHHCC-CCHHCHHHCHHHHTT
T ss_pred             HHHHHHhhcccceeEEcCccCCHHHHHHHHHhcCCcEEEEchhhhhcCHHhhhhhhhccCCC
Confidence            35567888889999999999 9999999998855999999999999999887   3444443

Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.

>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain

Probab=98.00  E-value=1.6e-05  Score=60.95  Aligned_cols=53  Identities=21%  Similarity=0.228  Sum_probs=46.6

Q ss_pred             HHHHHHcC--CeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhh-CCcHHHHHhhCC
Q 046574           15 LLMRKAFK--GTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLA-NPDLPRRFEFNA   68 (104)
Q Consensus        15 ~~ir~~~~--~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~la-nPdl~~ri~~g~   68 (104)
                      ..+++.++  .|||++||| +.+++.+.+..| +|+|.+|+.++. +|.++.++..+.
T Consensus       234 ~~~~~~~~~~ipIig~GGI~s~~da~e~l~aG-A~~Vqv~ta~~~~gp~~~~~i~~~L  290 (294)
T cd04741         234 RTFRRLLPSEIQIIGVGGVLDGRGAFRMRLAG-ASAVQVGTALGKEGPKVFARIEKEL  290 (294)
T ss_pred             HHHHHhcCCCCCEEEeCCCCCHHHHHHHHHcC-CCceeEchhhhhcCchHHHHHHHHH
Confidence            55667774  799999999 999999999988 899999999995 999999987653

DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.

>TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2

Probab=98.00  E-value=1.2e-05  Score=62.72  Aligned_cols=51  Identities=31%  Similarity=0.256  Sum_probs=43.4

Q ss_pred             HHH-HcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHh-----hCCcHHHHHhhCC
Q 046574           17 MRK-AFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFL-----ANPDLPRRFEFNA   68 (104)
Q Consensus        17 ir~-~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~l-----anPdl~~ri~~g~   68 (104)
                      +++ ..+.|||++||| +++++.++|..| +|+|++||++|     ..|+.+.+..++.
T Consensus       248 ~~~~~~~ipVIasGGI~~~~di~kaLalG-Ad~V~igr~~L~~~~~~g~~~v~~~i~~~  305 (333)
T TIGR02151       248 VRSDAPDAPIIASGGLRTGLDVAKAIALG-ADAVGMARPFLKAALDEGEEAVIEEIELI  305 (333)
T ss_pred             HHhcCCCCeEEEECCCCCHHHHHHHHHhC-CCeehhhHHHHHHHHhcCHHHHHHHHHHH
Confidence            444 346799999999 999999999999 99999999999     7888777776654

Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids.

>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain

Probab=97.95  E-value=1.5e-05  Score=61.04  Aligned_cols=55  Identities=15%  Similarity=0.087  Sum_probs=48.9

Q ss_pred             hHHHHHHHHc--CCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhh-CCcHHHHHhhC
Q 046574           12 HSLLLMRKAF--KGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLA-NPDLPRRFEFN   67 (104)
Q Consensus        12 ~~~~~ir~~~--~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~la-nPdl~~ri~~g   67 (104)
                      +....+++.+  +.|||++||| +.+++.+.+..| +|+|.+||.++. .|+.+.++..+
T Consensus       240 ~~v~~~~~~~~~~ipIig~GGI~~~~da~~~l~aG-A~~V~i~ta~~~~g~~~~~~i~~~  298 (299)
T cd02940         240 RAVSQIARAPEPGLPISGIGGIESWEDAAEFLLLG-ASVVQVCTAVMNQGFTIVDDMCTG  298 (299)
T ss_pred             HHHHHHHHhcCCCCcEEEECCCCCHHHHHHHHHcC-CChheEceeecccCCcHHHHHhhh
Confidence            3456688888  6899999999 999999999988 899999999888 99999998765

DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.

>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative

Probab=97.93  E-value=2.1e-05  Score=58.94  Aligned_cols=45  Identities=22%  Similarity=0.362  Sum_probs=39.9

Q ss_pred             hHHHHHHHHcC-CeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhC
Q 046574           12 HSLLLMRKAFK-GTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLAN   57 (104)
Q Consensus        12 ~~~~~ir~~~~-~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lan   57 (104)
                      +....+++.++ +|||++||| |.++|.+.+..| +|.|.+||+++.+
T Consensus       180 ~~I~~i~~~~~~ipIIgNGgI~s~eda~e~l~~G-Ad~VmvgR~~l~~  226 (231)
T TIGR00736       180 DLLKILSEEFNDKIIIGNNSIDDIESAKEMLKAG-ADFVSVARAILKG  226 (231)
T ss_pred             HHHHHHHHhcCCCcEEEECCcCCHHHHHHHHHhC-CCeEEEcHhhccC
Confidence            35677888885 899999999 999999999977 8999999999865

Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.

>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional

Probab=97.82  E-value=5.7e-05  Score=55.17  Aligned_cols=52  Identities=25%  Similarity=0.272  Sum_probs=44.0

Q ss_pred             hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHh
Q 046574           12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLPRRFE   65 (104)
Q Consensus        12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~   65 (104)
                      ..++.+++.++.||++.||| ++++++++++.| +|.|.+|+.++ +|+++.+..
T Consensus       163 ~~i~~i~~~~~iPvia~GGI~t~~~~~~~l~~G-adgV~iGsai~-~~~~~~~~~  215 (221)
T PRK01130        163 ALLKELLKAVGCPVIAEGRINTPEQAKKALELG-AHAVVVGGAIT-RPEEITKWF  215 (221)
T ss_pred             HHHHHHHHhCCCCEEEECCCCCHHHHHHHHHCC-CCEEEEchHhc-CCHHHHHHH
Confidence            46677888888999999999 899999999998 89999999854 677766543

>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated

Probab=97.78  E-value=7.5e-05  Score=54.55  Aligned_cols=55  Identities=22%  Similarity=0.246  Sum_probs=48.6

Q ss_pred             hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHhhC
Q 046574           12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEFN   67 (104)
Q Consensus        12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~~g   67 (104)
                      +..+.+++.++.||++.||| +.++++.++..| +|.|.+|..++.+|++..++.+.
T Consensus        64 ~~i~~i~~~~~~pv~~~GGI~~~ed~~~~~~~G-a~~vilg~~~l~~~~~l~ei~~~  119 (233)
T PRK00748         64 ELIEAIVKAVDIPVQVGGGIRSLETVEALLDAG-VSRVIIGTAAVKNPELVKEACKK  119 (233)
T ss_pred             HHHHHHHHHCCCCEEEcCCcCCHHHHHHHHHcC-CCEEEECchHHhCHHHHHHHHHH
Confidence            35566778888899999999 999999999988 89999999999999999887764

>cd02812 PcrB_like PcrB_like proteins

Probab=97.74  E-value=8.7e-05  Score=55.31  Aligned_cols=54  Identities=22%  Similarity=0.426  Sum_probs=48.3

Q ss_pred             chHHHHHHHHc-CCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHh
Q 046574           11 PHSLLLMRKAF-KGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLPRRFE   65 (104)
Q Consensus        11 ~~~~~~ir~~~-~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~   65 (104)
                      .+..+.+++.. +.|++..||| ++++|+++++.| +|.|.+|-.+..||++..++.
T Consensus       163 ~e~I~~v~~~~~~~pl~vGGGIrs~e~a~~l~~aG-AD~VVVGsai~~~p~~~~~~v  218 (219)
T cd02812         163 PEVVRAVKKVLGDTPLIVGGGIRSGEQAKEMAEAG-ADTIVVGNIVEEDPNAALETV  218 (219)
T ss_pred             HHHHHHHHHhcCCCCEEEeCCCCCHHHHHHHHHcC-CCEEEECchhhCCHHHHHHHh
Confidence            35677889988 8899999999 999999999888 899999999999999988764

One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown.

>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ

Probab=97.74  E-value=0.00011  Score=54.03  Aligned_cols=54  Identities=28%  Similarity=0.283  Sum_probs=48.3

Q ss_pred             HHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHhhC
Q 046574           13 SLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEFN   67 (104)
Q Consensus        13 ~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~~g   67 (104)
                      ..+.+++.++.||++.||+ +.++++.+++.| +|.|.+|+.++.||+++.++.+.
T Consensus        65 ~~~~i~~~~~~pv~~~ggi~~~~d~~~~~~~G-~~~vilg~~~l~~~~~~~~~~~~  119 (232)
T TIGR03572        65 LISNLAEECFMPLTVGGGIRSLEDAKKLLSLG-ADKVSINTAALENPDLIEEAARR  119 (232)
T ss_pred             HHHHHHHhCCCCEEEECCCCCHHHHHHHHHcC-CCEEEEChhHhcCHHHHHHHHHH
Confidence            5567777788899999999 999999998887 89999999999999999998873

This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr

>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI

Probab=97.72  E-value=0.00016  Score=50.54  Aligned_cols=53  Identities=19%  Similarity=0.159  Sum_probs=44.8

Q ss_pred             hHHHHHHHHcCCeEEEeCCCCHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHh
Q 046574           12 HSLLLMRKAFKGTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANPDLPRRFE   65 (104)
Q Consensus        12 ~~~~~ir~~~~~pvi~~Ggi~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~   65 (104)
                      ..++.+++..+.||++.|||+++.+.++++.| +|.|++|+.++.++|....++
T Consensus       140 ~~~~~~~~~~~~pv~a~GGi~~~~i~~~~~~G-a~~i~~g~~i~~~~~~~~~~~  192 (196)
T cd00564         140 ELLREIAELVEIPVVAIGGITPENAAEVLAAG-ADGVAVISAITGADDPAAAAR  192 (196)
T ss_pred             HHHHHHHHhCCCCEEEECCCCHHHHHHHHHcC-CCEEEEehHhhcCCCHHHHHH
Confidence            34555666667899999999999999999988 899999999999999776654

TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.

>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional

Probab=97.72  E-value=0.00014  Score=53.58  Aligned_cols=54  Identities=15%  Similarity=0.059  Sum_probs=46.7

Q ss_pred             hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHhh
Q 046574           12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEF   66 (104)
Q Consensus        12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~~   66 (104)
                      +..+.+++.++.||+++||+ ++++++++...| +|.|.+|+.+..+|..+..++.
T Consensus       183 ~~i~~i~~~~~iPvia~GGI~~~~di~~~~~~G-a~gv~vgsa~~~~~~~~~~~~~  237 (241)
T PRK13585        183 EPVKELVDSVDIPVIASGGVTTLDDLRALKEAG-AAGVVVGSALYKGKFTLEEAIE  237 (241)
T ss_pred             HHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcC-CCEEEEEHHHhcCCcCHHHHHH
Confidence            45677888888999999999 899999987777 8999999999999998877653

>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate

Probab=97.68  E-value=0.0001  Score=53.79  Aligned_cols=48  Identities=29%  Similarity=0.335  Sum_probs=41.5

Q ss_pred             hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcH
Q 046574           12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDL   60 (104)
Q Consensus        12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl   60 (104)
                      ...+.+++.++.||+++||| ++++++++++.| +|.|.+|+.++...+.
T Consensus       167 ~~l~~i~~~~~ipvia~GGI~~~~~~~~~l~~G-adgV~vGsal~~~~~~  215 (219)
T cd04729         167 ELLKELRKALGIPVIAEGRINSPEQAAKALELG-ADAVVVGSAITRPEHI  215 (219)
T ss_pred             HHHHHHHHhcCCCEEEeCCCCCHHHHHHHHHCC-CCEEEEchHHhChHhH
Confidence            46677888888999999999 899999999999 8999999996655544

This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.

>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated

Probab=97.67  E-value=5.3e-05  Score=60.39  Aligned_cols=54  Identities=13%  Similarity=0.002  Sum_probs=47.2

Q ss_pred             HHHHHHHc---CCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhh-CCcHHHHHhhCC
Q 046574           14 LLLMRKAF---KGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLA-NPDLPRRFEFNA   68 (104)
Q Consensus        14 ~~~ir~~~---~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~la-nPdl~~ri~~g~   68 (104)
                      ...+++.+   ++|||++||| |.++|.+.+..| +|+|.+||+++. .|+.+.++..+.
T Consensus       242 v~~~~~~~~~~~ipIig~GGI~s~~da~e~i~aG-A~~Vqi~ta~~~~gp~ii~~I~~~L  300 (420)
T PRK08318        242 VAEIARDPETRGLPISGIGGIETWRDAAEFILLG-AGTVQVCTAAMQYGFRIVEDMISGL  300 (420)
T ss_pred             HHHHHhccccCCCCEEeecCcCCHHHHHHHHHhC-CChheeeeeeccCCchhHHHHHHHH
Confidence            34566666   5799999999 999999999988 899999999998 899999998875

>PRK14024 phosphoribosyl isomerase A; Provisional

Probab=97.64  E-value=0.00014  Score=54.14  Aligned_cols=55  Identities=25%  Similarity=0.255  Sum_probs=48.7

Q ss_pred             hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHhhC
Q 046574           12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEFN   67 (104)
Q Consensus        12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~~g   67 (104)
                      ...+.+.+.+.+||.+.||| |.++++.++..| +|-|.+|-.++.||+++.++.+.
T Consensus        65 ~~i~~i~~~~~~pv~vgGGirs~edv~~~l~~G-a~kvviGs~~l~~p~l~~~i~~~  120 (241)
T PRK14024         65 ELLAEVVGKLDVKVELSGGIRDDESLEAALATG-CARVNIGTAALENPEWCARVIAE  120 (241)
T ss_pred             HHHHHHHHHcCCCEEEcCCCCCHHHHHHHHHCC-CCEEEECchHhCCHHHHHHHHHH
Confidence            45566777778899999999 999999999998 89999999999999999998763

>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein

Probab=97.64  E-value=0.00022  Score=53.30  Aligned_cols=54  Identities=24%  Similarity=0.366  Sum_probs=47.9

Q ss_pred             chHHHHHHHHc-CCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHh
Q 046574           11 PHSLLLMRKAF-KGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLPRRFE   65 (104)
Q Consensus        11 ~~~~~~ir~~~-~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~   65 (104)
                      .+..+.+++.+ +.||+..||| ++++++++++.| +|.|.+|-.+..||+++.+..
T Consensus       167 ~e~i~~v~~~~~~~pl~vGGGIrs~e~a~~l~~aG-AD~VVVGs~~~~dp~~~~~~v  222 (223)
T TIGR01768       167 PELVAEVKKVLDKARLFVGGGIRSVEKAREMAEAG-ADTIVTGNVIEEDVDKALETI  222 (223)
T ss_pred             HHHHHHHHHHcCCCCEEEecCCCCHHHHHHHHHcC-CCEEEECcHHhhCHHHHHHhh
Confidence            45678899988 7899999999 999999999878 899999999999999987653

This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.

>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]

Probab=97.64  E-value=0.00014  Score=55.02  Aligned_cols=54  Identities=22%  Similarity=0.231  Sum_probs=47.9

Q ss_pred             hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHhh
Q 046574           12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEF   66 (104)
Q Consensus        12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~~   66 (104)
                      +..++..+.+.+|+-..||| +.++++++|..| +|-|++-.+.+.||+|+.++..
T Consensus        64 ~vv~r~A~~vfiPltVGGGI~s~eD~~~ll~aG-ADKVSINsaAv~~p~lI~~~a~  118 (256)
T COG0107          64 DVVERVAEQVFIPLTVGGGIRSVEDARKLLRAG-ADKVSINSAAVKDPELITEAAD  118 (256)
T ss_pred             HHHHHHHhhceeeeEecCCcCCHHHHHHHHHcC-CCeeeeChhHhcChHHHHHHHH
Confidence            34455666667899999999 999999999999 7999999999999999999887

>PRK07695 transcriptional regulator TenI; Provisional

Probab=97.64  E-value=0.00025  Score=51.11  Aligned_cols=53  Identities=13%  Similarity=0.174  Sum_probs=44.3

Q ss_pred             hHHHHHHHHcCCeEEEeCCCCHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHh
Q 046574           12 HSLLLMRKAFKGTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANPDLPRRFE   65 (104)
Q Consensus        12 ~~~~~ir~~~~~pvi~~Ggi~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~   65 (104)
                      ...+.+++.++.||++.|||+++.+.++++.| +|.|++++.+...+|....++
T Consensus       139 ~~l~~~~~~~~ipvia~GGI~~~~~~~~~~~G-a~gvav~s~i~~~~~p~~~~~  191 (201)
T PRK07695        139 EELSDIARALSIPVIAIGGITPENTRDVLAAG-VSGIAVMSGIFSSANPYSKAK  191 (201)
T ss_pred             HHHHHHHHhCCCCEEEEcCCCHHHHHHHHHcC-CCEEEEEHHHhcCCCHHHHHH
Confidence            34556666778899999999999999999988 899999999998777655554

>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional

Probab=97.61  E-value=0.00027  Score=52.02  Aligned_cols=56  Identities=21%  Similarity=0.332  Sum_probs=48.9

Q ss_pred             hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHhhCC
Q 046574           12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEFNA   68 (104)
Q Consensus        12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~~g~   68 (104)
                      .....+.+.++.|+++.||| +.++++.+++.| +|.|.+|..++.||+++.++.+.-
T Consensus        66 ~~i~~i~~~~~~~l~v~GGi~~~~~~~~~~~~G-a~~v~iGs~~~~~~~~~~~i~~~~  122 (241)
T PRK13585         66 EAIEKIIEAVGVPVQLGGGIRSAEDAASLLDLG-VDRVILGTAAVENPEIVRELSEEF  122 (241)
T ss_pred             HHHHHHHHHcCCcEEEcCCcCCHHHHHHHHHcC-CCEEEEChHHhhChHHHHHHHHHh
Confidence            35556667778899999999 999999999988 899999999999999999887753

>PF01180 DHO_dh: Dihydroorotate dehydrogenase; InterPro: IPR012135 Dihydroorotate dehydrogenase (DHOD), also known as dihydroorotate oxidase, catalyses the fourth step in de novo pyrimidine biosynthesis, the stereospecific oxidation of (S)-dihydroorotate to orotate, which is the only redox reaction in this pathway

Probab=97.60  E-value=0.00019  Score=54.63  Aligned_cols=55  Identities=24%  Similarity=0.267  Sum_probs=47.7

Q ss_pred             HHHHHHHHcC--CeEEEeCCC-CHHHHHHHHHcCCCcEEecchHH-hhCCcHHHHHhhCC
Q 046574           13 SLLLMRKAFK--GTFLVAGGY-DREDGNKAIAEGRADLVVYGRFF-LANPDLPRRFEFNA   68 (104)
Q Consensus        13 ~~~~ir~~~~--~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~-lanPdl~~ri~~g~   68 (104)
                      ....+++.++  .|+|++||| |++++.+.+..| +|+|.++..+ ...|+.+.++.++.
T Consensus       233 ~V~~~~~~~~~~i~Iig~GGI~s~~da~e~l~aG-A~~Vqv~Sal~~~Gp~~~~~i~~~L  291 (295)
T PF01180_consen  233 WVRELRKALGQDIPIIGVGGIHSGEDAIEFLMAG-ASAVQVCSALIYRGPGVIRRINREL  291 (295)
T ss_dssp             HHHHHHHHTTTSSEEEEESS--SHHHHHHHHHHT-ESEEEESHHHHHHGTTHHHHHHHHH
T ss_pred             HHHHHHhccccceEEEEeCCcCCHHHHHHHHHhC-CCHheechhhhhcCcHHHHHHHHHH
Confidence            4456888888  799999999 999999999999 8999999999 77999999998753

DHODs can be divided into two mains classes: class 1 cytosolic enzymes found primarily in Gram-positive bacteria, and class 2 membrane-associated enzymes found primarily in eukaryotic mitochondria and Gram-negative bacteria []. The class 1 DHODs can be further divided into subclasses 1A and 1B, which differ in their structural organisation and use of electron acceptors. The 1A enzyme is a homodimer of two PyrD subunits where each subunit forms a TIM barrel fold with a bound FMN cofactor located near the top of the barrel []. Fumarate is the natural electron acceptor for this enzyme. The 1B enzyme, in contrast is a heterotetramer composed of a central, FMN-containing, PyrD homodimer resembling the 1A homodimer, and two additional PyrK subunits which contain FAD and a 2Fe-2S cluster []. These additional groups allow the enzyme to use NAD(+) as its natural electron acceptor. The class 2 membrane-associated enzymes are monomers which have the FMN-containing TIM barrel domain found in the class 1 PyrD subunit, and an additional N-terminal alpha helical domain [, ]. These enzymes use respiratory quinones as the physiological electron acceptor. This entry represents the FMN-binding subunit common to all classes of dihydroorotate dehydrogenase.; GO: 0004152 dihydroorotate dehydrogenase activity, 0006222 UMP biosynthetic process, 0055114 oxidation-reduction process; PDB: 3GYE_A 3GZ3_A 3MHU_B 3MJY_A 3TQ0_A 2B4G_C 1EP3_A 1EP2_A 1EP1_A 3I6R_A ....

>KOG2335 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]

Probab=97.59  E-value=0.00012  Score=58.08  Aligned_cols=49  Identities=24%  Similarity=0.259  Sum_probs=43.2

Q ss_pred             HHHHHHHHcC-CeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHH
Q 046574           13 SLLLMRKAFK-GTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLP   61 (104)
Q Consensus        13 ~~~~ir~~~~-~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~   61 (104)
                      ....+|+.+. +|||+||+| +.++++.++....+|.|..||++|.||-+-
T Consensus       193 ~i~~v~~~~~~ipviaNGnI~~~~d~~~~~~~tG~dGVM~arglL~NPa~F  243 (358)
T KOG2335|consen  193 AIKAVRENVPDIPVIANGNILSLEDVERCLKYTGADGVMSARGLLYNPALF  243 (358)
T ss_pred             HHHHHHHhCcCCcEEeeCCcCcHHHHHHHHHHhCCceEEecchhhcCchhh
Confidence            5567888887 899999999 999999999954489999999999999664

>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain

Probab=97.55  E-value=0.00021  Score=55.61  Aligned_cols=44  Identities=41%  Similarity=0.477  Sum_probs=37.1

Q ss_pred             HHHHHHHHc-CCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhC
Q 046574           13 SLLLMRKAF-KGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLAN   57 (104)
Q Consensus        13 ~~~~ir~~~-~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lan   57 (104)
                      .+..+++.. +.|||++||| +..++.++|..| +|+|++||+||.-
T Consensus       245 ~l~~~~~~~~~ipIiasGGIr~~~dv~kal~lG-Ad~V~i~~~~L~~  290 (326)
T cd02811         245 SLLEVRSALPDLPLIASGGIRNGLDIAKALALG-ADLVGMAGPFLKA  290 (326)
T ss_pred             HHHHHHHHcCCCcEEEECCCCCHHHHHHHHHhC-CCEEEEcHHHHHH
Confidence            334455566 6899999999 999999999999 9999999998753

Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.

>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional

Probab=97.53  E-value=0.00023  Score=52.96  Aligned_cols=52  Identities=15%  Similarity=0.144  Sum_probs=45.7

Q ss_pred             HHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHhh
Q 046574           13 SLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEF   66 (104)
Q Consensus        13 ~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~~   66 (104)
                      ..+.+.+..+.||++.||| +.+++++++..| +|-|.+|+..+ ||+|.+++.+
T Consensus        64 ~i~~i~~~~~~pv~~gGGIrs~edv~~l~~~G-~~~vivGtaa~-~~~~l~~~~~  116 (228)
T PRK04128         64 VVKNIIRETGLKVQVGGGLRTYESIKDAYEIG-VENVIIGTKAF-DLEFLEKVTS  116 (228)
T ss_pred             HHHHHHhhCCCCEEEcCCCCCHHHHHHHHHCC-CCEEEECchhc-CHHHHHHHHH
Confidence            4456666677899999999 999999999988 79999999999 9999999875

>PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed

Probab=97.52  E-value=0.00034  Score=52.55  Aligned_cols=54  Identities=24%  Similarity=0.464  Sum_probs=46.6

Q ss_pred             chHHHHHHHHcCC-eEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCc-HHHHHh
Q 046574           11 PHSLLLMRKAFKG-TFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPD-LPRRFE   65 (104)
Q Consensus        11 ~~~~~~ir~~~~~-pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPd-l~~ri~   65 (104)
                      .+..+.+++..+. ||++.||| +++++++++..| +|.|.+|-.+..||+ .++.++
T Consensus       172 ~e~I~~v~~~~~~~pvivGGGIrs~e~a~~~l~~G-AD~VVVGSai~~d~~~~~~~~~  228 (232)
T PRK04169        172 PEMVKAVKKALDITPLIYGGGIRSPEQARELMAAG-ADTIVVGNIIEEDPKKTVKAIK  228 (232)
T ss_pred             HHHHHHHHHhcCCCcEEEECCCCCHHHHHHHHHhC-CCEEEEChHHhhCHHHHHHHHH
Confidence            3567788998888 99999999 999999999988 899999999999998 444443

>PRK05437 isopentenyl pyrophosphate isomerase; Provisional

Probab=97.48  E-value=0.00026  Score=55.73  Aligned_cols=44  Identities=36%  Similarity=0.385  Sum_probs=37.8

Q ss_pred             HHHHHHHHc-CCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhC
Q 046574           13 SLLLMRKAF-KGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLAN   57 (104)
Q Consensus        13 ~~~~ir~~~-~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lan   57 (104)
                      .+..+++.. ++|||++||| ++.++.++|..| +|+|++||+++..
T Consensus       251 ~l~~i~~~~~~ipvia~GGI~~~~dv~k~l~~G-Ad~v~ig~~~l~~  296 (352)
T PRK05437        251 SLLEARSLLPDLPIIASGGIRNGLDIAKALALG-ADAVGMAGPFLKA  296 (352)
T ss_pred             HHHHHHHhcCCCeEEEECCCCCHHHHHHHHHcC-CCEEEEhHHHHHH
Confidence            334456663 7899999999 999999999999 9999999999976

>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF)

Probab=97.47  E-value=0.00031  Score=51.87  Aligned_cols=46  Identities=22%  Similarity=0.243  Sum_probs=40.3

Q ss_pred             hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhC
Q 046574           12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLAN   57 (104)
Q Consensus        12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lan   57 (104)
                      +.++.+++.++.|||++||+ ++++++++++.+.+|.|.+||++...
T Consensus       183 ~~i~~i~~~~~~pvia~GGi~~~~di~~~l~~~g~dgv~vg~al~~~  229 (243)
T cd04731         183 ELIRAVSSAVNIPVIASGGAGKPEHFVEAFEEGGADAALAASIFHFG  229 (243)
T ss_pred             HHHHHHHhhCCCCEEEeCCCCCHHHHHHHHHhCCCCEEEEeHHHHcC
Confidence            45677888888999999999 99999999998569999999998764

Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.

>PLN02826 dihydroorotate dehydrogenase

Probab=97.47  E-value=0.00029  Score=56.71  Aligned_cols=55  Identities=31%  Similarity=0.306  Sum_probs=47.5

Q ss_pred             HHHHHHHHc--CCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhC-CcHHHHHhhCC
Q 046574           13 SLLLMRKAF--KGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLAN-PDLPRRFEFNA   68 (104)
Q Consensus        13 ~~~~ir~~~--~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lan-Pdl~~ri~~g~   68 (104)
                      ....+++.+  +.|||++||| +.++|-+.|..| +++|.++++++.+ |.++.++..+.
T Consensus       330 ~v~~l~~~~~~~ipIIgvGGI~sg~Da~e~i~AG-As~VQv~Ta~~~~Gp~~i~~I~~eL  388 (409)
T PLN02826        330 VLREMYRLTRGKIPLVGCGGVSSGEDAYKKIRAG-ASLVQLYTAFAYEGPALIPRIKAEL  388 (409)
T ss_pred             HHHHHHHHhCCCCcEEEECCCCCHHHHHHHHHhC-CCeeeecHHHHhcCHHHHHHHHHHH
Confidence            344566666  4699999999 999999999999 7999999999996 99999998765

>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE)

Probab=97.47  E-value=0.00049  Score=49.05  Aligned_cols=52  Identities=21%  Similarity=0.277  Sum_probs=43.1

Q ss_pred             HHHHHHHHcC-----CeEEEeCCCCHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHh
Q 046574           13 SLLLMRKAFK-----GTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANPDLPRRFE   65 (104)
Q Consensus        13 ~~~~ir~~~~-----~pvi~~Ggi~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~   65 (104)
                      ..+.+++..+     .|+++.|||+++.+.++++.| +|.|++|+++...+|....++
T Consensus       152 ~i~~~~~~~~~~~~~~pi~v~GGI~~env~~~~~~g-ad~iivgsai~~~~~~~~~~~  208 (211)
T cd00429         152 KIRKLRELIPENNLNLLIEVDGGINLETIPLLAEAG-ADVLVAGSALFGSDDYAEAIK  208 (211)
T ss_pred             HHHHHHHHHHhcCCCeEEEEECCCCHHHHHHHHHcC-CCEEEECHHHhCCCCHHHHHH
Confidence            3445666663     799999999999999999888 799999999999998766654

This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.

>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed

Probab=97.45  E-value=0.00062  Score=48.70  Aligned_cols=53  Identities=21%  Similarity=0.196  Sum_probs=44.6

Q ss_pred             hHHHHHHHHcC-CeEEEeCCCCHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHh
Q 046574           12 HSLLLMRKAFK-GTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANPDLPRRFE   65 (104)
Q Consensus        12 ~~~~~ir~~~~-~pvi~~Ggi~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~   65 (104)
                      ...+.+++..+ .||++.|||+++.+.++++.| +|.|++|+.+..++|....++
T Consensus       149 ~~~~~~~~~~~~~~v~a~GGI~~~~i~~~~~~G-a~gv~~gs~i~~~~d~~~~~~  202 (212)
T PRK00043        149 EGLREIRAAVGDIPIVAIGGITPENAPEVLEAG-ADGVAVVSAITGAEDPEAAAR  202 (212)
T ss_pred             HHHHHHHHhcCCCCEEEECCcCHHHHHHHHHcC-CCEEEEeHHhhcCCCHHHHHH
Confidence            45666777777 899999999999999999998 799999999998888654443

>cd04732 HisA HisA

Probab=97.45  E-value=0.00041  Score=50.58  Aligned_cols=47  Identities=15%  Similarity=0.101  Sum_probs=41.6

Q ss_pred             hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCc
Q 046574           12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPD   59 (104)
Q Consensus        12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPd   59 (104)
                      +..+.+++.+++||+++||+ ++++++++++.| +|.|.+||.++.++-
T Consensus       180 ~~i~~i~~~~~ipvi~~GGi~~~~di~~~~~~G-a~gv~vg~~~~~~~~  227 (234)
T cd04732         180 ELYKELAAATGIPVIASGGVSSLDDIKALKELG-VAGVIVGKALYEGKI  227 (234)
T ss_pred             HHHHHHHHhcCCCEEEecCCCCHHHHHHHHHCC-CCEEEEeHHHHcCCC
Confidence            45677888888999999999 999999999886 899999999999983

Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.

>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes

Probab=97.44  E-value=0.00057  Score=50.59  Aligned_cols=53  Identities=28%  Similarity=0.352  Sum_probs=47.4

Q ss_pred             HHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHhh
Q 046574           13 SLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEF   66 (104)
Q Consensus        13 ~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~~   66 (104)
                      ..+.+.+.+..||.+.||| +.++++.+++.| +|-|.+|...+.||++..++.+
T Consensus        64 ~i~~i~~~~~~~i~vgGGIrs~ed~~~ll~~G-a~~Vvigt~~~~~~~~l~~~~~  117 (229)
T PF00977_consen   64 LIKEIAKETGIPIQVGGGIRSIEDAERLLDAG-ADRVVIGTEALEDPELLEELAE  117 (229)
T ss_dssp             HHHHHHHHSSSEEEEESSE-SHHHHHHHHHTT--SEEEESHHHHHCCHHHHHHHH
T ss_pred             HHHHHHhcCCccEEEeCccCcHHHHHHHHHhC-CCEEEeChHHhhchhHHHHHHH
Confidence            4456777778899999999 999999999999 8999999999999999999887

Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....

>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated

Probab=97.44  E-value=0.0004  Score=50.71  Aligned_cols=46  Identities=17%  Similarity=0.204  Sum_probs=40.4

Q ss_pred             hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhC
Q 046574           12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLAN   57 (104)
Q Consensus        12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lan   57 (104)
                      +..+.+++.++.|||++||+ ++++++++++.|.+|.|.+||.++..
T Consensus       180 ~~i~~l~~~~~ipvia~GGi~~~~di~~~~~~g~~~gv~vg~a~~~~  226 (233)
T PRK00748        180 EATRELAAAVPIPVIASGGVSSLDDIKALKGLGAVEGVIVGRALYEG  226 (233)
T ss_pred             HHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCccEEEEEHHHHcC
Confidence            35567778788999999999 99999999998889999999998754

>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit

Probab=97.43  E-value=0.00034  Score=52.41  Aligned_cols=45  Identities=22%  Similarity=0.256  Sum_probs=40.3

Q ss_pred             hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhh
Q 046574           12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLA   56 (104)
Q Consensus        12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~la   56 (104)
                      ..+..+++.+++|||++||+ +++++++++..|.+|.|.+|+.+-.
T Consensus       189 ~~~~~i~~~~~ipvia~GGi~s~~di~~~~~~g~~dgv~~g~a~~~  234 (254)
T TIGR00735       189 ELTKAVSEAVKIPVIASGGAGKPEHFYEAFTKGKADAALAASVFHY  234 (254)
T ss_pred             HHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCcceeeEhHHHhC
Confidence            46677888889999999999 9999999999998999999998754

>PRK02506 dihydroorotate dehydrogenase 1A; Reviewed

Probab=97.43  E-value=0.00025  Score=54.88  Aligned_cols=53  Identities=19%  Similarity=0.227  Sum_probs=46.6

Q ss_pred             HHHHHHc--CCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhh-CCcHHHHHhhCC
Q 046574           15 LLMRKAF--KGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLA-NPDLPRRFEFNA   68 (104)
Q Consensus        15 ~~ir~~~--~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~la-nPdl~~ri~~g~   68 (104)
                      ..+++.+  +.|||++||| +.++|-+.+..| +|+|.++.+++. +|+++.++..+.
T Consensus       232 ~~~~~~~~~~ipIig~GGI~s~~da~e~i~aG-A~~Vqv~ta~~~~gp~~~~~i~~~L  288 (310)
T PRK02506        232 RAFYQRLNPSIQIIGTGGVKTGRDAFEHILCG-ASMVQVGTALHKEGPAVFERLTKEL  288 (310)
T ss_pred             HHHHHhcCCCCCEEEECCCCCHHHHHHHHHcC-CCHHhhhHHHHHhChHHHHHHHHHH
Confidence            3455666  4699999999 999999999999 799999999998 799999998876

>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes

Probab=97.40  E-value=0.00043  Score=53.05  Aligned_cols=45  Identities=38%  Similarity=0.382  Sum_probs=38.6

Q ss_pred             HHHHHHHHcC--CeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCC
Q 046574           13 SLLLMRKAFK--GTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANP   58 (104)
Q Consensus        13 ~~~~ir~~~~--~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanP   58 (104)
                      .+..+++.++  +|||++||| ++.++.+++.-| +|.|.+||+||...
T Consensus       216 ~l~~i~~~~~~~ipvia~GGI~~~~d~~kal~lG-Ad~V~ig~~~l~~~  263 (299)
T cd02809         216 ALPEIVAAVGGRIEVLLDGGIRRGTDVLKALALG-ADAVLIGRPFLYGL  263 (299)
T ss_pred             HHHHHHHHhcCCCeEEEeCCCCCHHHHHHHHHcC-CCEEEEcHHHHHHH
Confidence            4556767664  899999999 999999999988 89999999999764

This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.

>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional

Probab=97.40  E-value=0.00048  Score=51.34  Aligned_cols=55  Identities=15%  Similarity=0.219  Sum_probs=47.9

Q ss_pred             hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHhhC
Q 046574           12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEFN   67 (104)
Q Consensus        12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~~g   67 (104)
                      +..+.|.+.+..||.+.||| +.++++.++..| +|-|.+|...+.||++..++.+-
T Consensus        66 ~~I~~i~~~~~~pi~vGGGIrs~e~v~~~l~~G-a~kvvigt~a~~~~~~l~~~~~~  121 (234)
T PRK13587         66 DYIKSLRRLTTKDIEVGGGIRTKSQIMDYFAAG-INYCIVGTKGIQDTDWLKEMAHT  121 (234)
T ss_pred             HHHHHHHhhcCCeEEEcCCcCCHHHHHHHHHCC-CCEEEECchHhcCHHHHHHHHHH
Confidence            34556666667899999999 999999999998 79999999999999999998763

>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS)

Probab=97.36  E-value=0.00069  Score=48.28  Aligned_cols=52  Identities=25%  Similarity=0.297  Sum_probs=41.9

Q ss_pred             HHHHHHHHcCCeEEEeCCCCHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHh
Q 046574           13 SLLLMRKAFKGTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANPDLPRRFE   65 (104)
Q Consensus        13 ~~~~ir~~~~~pvi~~Ggi~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~   65 (104)
                      ..+.+++..+.|+++.|||+++.+.++++.| +|.|++|+++...+|+...++
T Consensus       149 ~i~~~~~~~~~~i~~~GGI~~~~i~~~~~~G-ad~vvvGsai~~~~d~~~~~~  200 (202)
T cd04726         149 DLKKVKKLLGVKVAVAGGITPDTLPEFKKAG-ADIVIVGRAITGAADPAEAAR  200 (202)
T ss_pred             HHHHHHhhcCCCEEEECCcCHHHHHHHHhcC-CCEEEEeehhcCCCCHHHHHh
Confidence            4444554456799999999999999999988 799999999988888655543

KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.

>TIGR01163 rpe ribulose-phosphate 3-epimerase

Probab=97.36  E-value=0.0008  Score=48.06  Aligned_cols=51  Identities=22%  Similarity=0.345  Sum_probs=41.3

Q ss_pred             HHHHHHHcC-----CeEEEeCCCCHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHh
Q 046574           14 LLLMRKAFK-----GTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANPDLPRRFE   65 (104)
Q Consensus        14 ~~~ir~~~~-----~pvi~~Ggi~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~   65 (104)
                      .+.+++..+     .|+++.|||+++.+.++++.| +|.|++|+++...+|...+++
T Consensus       152 i~~i~~~~~~~~~~~~i~v~GGI~~env~~l~~~g-ad~iivgsai~~~~d~~~~~~  207 (210)
T TIGR01163       152 IREVRKMIDENGLSILIEVDGGVNDDNARELAEAG-ADILVAGSAIFGADDYKEVIR  207 (210)
T ss_pred             HHHHHHHHHhcCCCceEEEECCcCHHHHHHHHHcC-CCEEEEChHHhCCCCHHHHHH
Confidence            344555443     588999999999999999888 799999999999999766654

This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.

>COG0167 PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]

Probab=97.34  E-value=0.00027  Score=55.18  Aligned_cols=56  Identities=20%  Similarity=0.238  Sum_probs=50.0

Q ss_pred             hHHHHHHHHcC--CeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhC-CcHHHHHhhCC
Q 046574           12 HSLLLMRKAFK--GTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLAN-PDLPRRFEFNA   68 (104)
Q Consensus        12 ~~~~~ir~~~~--~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lan-Pdl~~ri~~g~   68 (104)
                      +....++++++  +|+|.+||| |.++|.+-|..| +++|.++.+++.+ |.++.++.++.
T Consensus       229 ~~v~~l~~~~~~~ipIIGvGGI~s~~DA~E~i~aG-A~~vQv~Tal~~~Gp~i~~~I~~~l  288 (310)
T COG0167         229 RVVAELYKRLGGDIPIIGVGGIETGEDALEFILAG-ASAVQVGTALIYKGPGIVKEIIKGL  288 (310)
T ss_pred             HHHHHHHHhcCCCCcEEEecCcCcHHHHHHHHHcC-CchheeeeeeeeeCchHHHHHHHHH
Confidence            35566777876  799999999 999999999999 7999999999999 99999998876

>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites

Probab=97.32  E-value=0.00053  Score=49.99  Aligned_cols=49  Identities=33%  Similarity=0.325  Sum_probs=42.4

Q ss_pred             hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHH
Q 046574           12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLP   61 (104)
Q Consensus        12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~   61 (104)
                      .....+++.++.||++.||| +++++.+++..| +|.|.+|+.++..++.+
T Consensus       146 ~~i~~i~~~~~~Pvi~~GGI~~~~~v~~~l~~G-adgV~vgS~l~~~~e~~  195 (236)
T cd04730         146 ALVPEVRDAVDIPVIAAGGIADGRGIAAALALG-ADGVQMGTRFLATEESG  195 (236)
T ss_pred             HHHHHHHHHhCCCEEEECCCCCHHHHHHHHHcC-CcEEEEchhhhcCcccC
Confidence            35667777888999999999 779999999887 89999999999888763

NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.

>TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase

Probab=97.28  E-value=0.0008  Score=50.51  Aligned_cols=54  Identities=22%  Similarity=0.081  Sum_probs=47.2

Q ss_pred             HHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHhhC
Q 046574           13 SLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEFN   67 (104)
Q Consensus        13 ~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~~g   67 (104)
                      ..+.+.+.+..||.+.||| |.++++.+++.| +|-|.+|...+.||+|..++.+.
T Consensus        65 ~i~~i~~~~~~~v~vgGGIrs~e~~~~~l~~G-a~~vvigT~a~~~p~~~~~~~~~  119 (243)
T TIGR01919        65 MLEEVVKLLVVVEELSGGRRDDSSLRAALTGG-RARVNGGTAALENPWWAAAVIRY  119 (243)
T ss_pred             HHHHHHHHCCCCEEEcCCCCCHHHHHHHHHcC-CCEEEECchhhCCHHHHHHHHHH
Confidence            4455666677899999999 999999999988 79999999999999999998763

This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent.

>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ

Probab=97.25  E-value=0.00075  Score=49.54  Aligned_cols=43  Identities=19%  Similarity=0.191  Sum_probs=36.7

Q ss_pred             hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHH
Q 046574           12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFF   54 (104)
Q Consensus        12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~   54 (104)
                      +.++.+++.+++|||++||+ +++++++++.+..+|.|++|+.|
T Consensus       187 ~~~~~i~~~~~ipvia~GGi~s~~di~~~l~~~gadgV~vg~a~  230 (232)
T TIGR03572       187 ELIKTVSDAVSIPVIALGGAGSLDDLVEVALEAGASAVAAASLF  230 (232)
T ss_pred             HHHHHHHhhCCCCEEEECCCCCHHHHHHHHHHcCCCEEEEehhh
Confidence            46677888888999999999 99999996665559999999876

This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr

>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II

Probab=97.23  E-value=0.00086  Score=51.88  Aligned_cols=48  Identities=27%  Similarity=0.289  Sum_probs=41.3

Q ss_pred             hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcH
Q 046574           12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDL   60 (104)
Q Consensus        12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl   60 (104)
                      ..+..+++.+++|||++||| +++.+..++..| +|.|.+|..|+.-++-
T Consensus       151 ~ll~~v~~~~~iPviaaGGI~~~~~~~~al~~G-A~gV~iGt~f~~t~Es  199 (307)
T TIGR03151       151 ALVPQVVDAVSIPVIAAGGIADGRGMAAAFALG-AEAVQMGTRFLCAKEC  199 (307)
T ss_pred             HHHHHHHHHhCCCEEEECCCCCHHHHHHHHHcC-CCEeecchHHhccccc
Confidence            35567788888999999999 999999999988 8999999999976543

This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.

>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase

Probab=97.20  E-value=0.0011  Score=48.43  Aligned_cols=45  Identities=18%  Similarity=0.136  Sum_probs=39.4

Q ss_pred             hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhC
Q 046574           12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLAN   57 (104)
Q Consensus        12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lan   57 (104)
                      +..+.+++..++||+++||+ ++++++++...| +|.|.+|+.++.+
T Consensus       179 ~~i~~i~~~~~ipvia~GGi~~~~di~~~~~~G-adgv~ig~a~~~~  224 (230)
T TIGR00007       179 ELTKELVKAVNVPVIASGGVSSIDDLIALKKLG-VYGVIVGKALYEG  224 (230)
T ss_pred             HHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHCC-CCEEEEeHHHHcC
Confidence            35567777788999999999 999999998877 8999999999876

Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).

>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase

Probab=97.17  E-value=0.0015  Score=47.67  Aligned_cols=56  Identities=25%  Similarity=0.291  Sum_probs=48.7

Q ss_pred             hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHhhCC
Q 046574           12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEFNA   68 (104)
Q Consensus        12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~~g~   68 (104)
                      ...+.+++.++.|+.+.||| +.++++.+++.| +|.|.+|-.++.||++...+....
T Consensus        62 ~~i~~i~~~~~~pi~~ggGI~~~ed~~~~~~~G-a~~vvlgs~~l~d~~~~~~~~~~~  118 (230)
T TIGR00007        62 PVIKKIVRETGVPVQVGGGIRSLEDVEKLLDLG-VDRVIIGTAAVENPDLVKELLKEY  118 (230)
T ss_pred             HHHHHHHHhcCCCEEEeCCcCCHHHHHHHHHcC-CCEEEEChHHhhCHHHHHHHHHHh
Confidence            45667777788899999999 999999999988 799999999999999988877643

Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).

>PRK05581 ribulose-phosphate 3-epimerase; Validated

Probab=97.15  E-value=0.0018  Score=46.73  Aligned_cols=40  Identities=25%  Similarity=0.467  Sum_probs=34.5

Q ss_pred             EEEeCCCCHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHh
Q 046574           25 FLVAGGYDREDGNKAIAEGRADLVVYGRFFLANPDLPRRFE   65 (104)
Q Consensus        25 vi~~Ggi~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~   65 (104)
                      +.+.|||+++.+.++++.| +|.|++|+.++.++|....++
T Consensus       173 i~v~GGI~~~nv~~l~~~G-aD~vvvgSai~~~~d~~~~~~  212 (220)
T PRK05581        173 IEVDGGINADNIKECAEAG-ADVFVAGSAVFGAPDYKEAID  212 (220)
T ss_pred             EEEECCCCHHHHHHHHHcC-CCEEEEChhhhCCCCHHHHHH
Confidence            5577999999999999887 799999999999999766554

>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional

Probab=97.15  E-value=0.0019  Score=50.08  Aligned_cols=50  Identities=20%  Similarity=0.178  Sum_probs=42.4

Q ss_pred             hHHHHHHHHcCCeEE--EeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHHH
Q 046574           12 HSLLLMRKAFKGTFL--VAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLPR   62 (104)
Q Consensus        12 ~~~~~ir~~~~~pvi--~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~   62 (104)
                      +.++.+++..+.||+  +.||| ||+++..+++.| +|.|++|+.+...+|...
T Consensus       193 elL~ei~~~~~iPVV~~AeGGI~TPedaa~vme~G-AdgVaVGSaI~ks~dP~~  245 (293)
T PRK04180        193 ELVKEVAELGRLPVVNFAAGGIATPADAALMMQLG-ADGVFVGSGIFKSGDPEK  245 (293)
T ss_pred             HHHHHHHHhCCCCEEEEEeCCCCCHHHHHHHHHhC-CCEEEEcHHhhcCCCHHH
Confidence            466778887788998  99999 999999999988 899999999986665433

>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional

Probab=97.12  E-value=0.0016  Score=48.98  Aligned_cols=54  Identities=19%  Similarity=0.164  Sum_probs=46.7

Q ss_pred             hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHhh
Q 046574           12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEF   66 (104)
Q Consensus        12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~~   66 (104)
                      +..+.+.+..+.||++.||+ +.+++++++..| ++.|.+|..++.+|+++..+..
T Consensus        64 ~~i~~i~~~~~~pv~~gGGi~s~~d~~~l~~~G-~~~vvigs~~~~~~~~~~~~~~  118 (258)
T PRK01033         64 ELIENLASECFMPLCYGGGIKTLEQAKKIFSLG-VEKVSINTAALEDPDLITEAAE  118 (258)
T ss_pred             HHHHHHHHhCCCCEEECCCCCCHHHHHHHHHCC-CCEEEEChHHhcCHHHHHHHHH
Confidence            34555666667899999999 999999999887 8999999999999999998875

>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water

Probab=97.12  E-value=0.0024  Score=46.40  Aligned_cols=53  Identities=19%  Similarity=0.277  Sum_probs=43.7

Q ss_pred             hHHHHHHHHc--CCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHh
Q 046574           12 HSLLLMRKAF--KGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLPRRFE   65 (104)
Q Consensus        12 ~~~~~ir~~~--~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~   65 (104)
                      +....+++.+  +.|+++.||| +++++.+++..| +|.|.+|+.++..+|....++
T Consensus       160 ~~~~~l~~~~~~~~pvia~gGI~s~edi~~~~~~G-a~gvivGsai~~~~~p~~~~~  215 (217)
T cd00331         160 NTTERLAPLIPKDVILVSESGISTPEDVKRLAEAG-ADAVLIGESLMRAPDPGAALR  215 (217)
T ss_pred             HHHHHHHHhCCCCCEEEEEcCCCCHHHHHHHHHcC-CCEEEECHHHcCCCCHHHHHH
Confidence            3456677764  4699999999 899999999998 799999999998888665543

IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.

>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]

Probab=97.11  E-value=0.0033  Score=46.66  Aligned_cols=53  Identities=19%  Similarity=0.191  Sum_probs=46.3

Q ss_pred             hHHHHHHHHcCCeEEEeCCCCHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHh
Q 046574           12 HSLLLMRKAFKGTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANPDLPRRFE   65 (104)
Q Consensus        12 ~~~~~ir~~~~~pvi~~Ggi~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~   65 (104)
                      +.+..+++...+|+++-|||+++.+.++++.| +|.|++-|.++.++|.....+
T Consensus       148 ~~l~~~~~~~~iP~vAIGGi~~~nv~~v~~~G-a~gVAvvsai~~a~d~~~a~~  200 (211)
T COG0352         148 EGLREIRELVNIPVVAIGGINLENVPEVLEAG-ADGVAVVSAITSAADPAAAAK  200 (211)
T ss_pred             HHHHHHHHhCCCCEEEEcCCCHHHHHHHHHhC-CCeEEehhHhhcCCCHHHHHH
Confidence            45566777778999999999999999999999 799999999999988876554

>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa

Probab=97.10  E-value=0.0022  Score=49.52  Aligned_cols=47  Identities=21%  Similarity=0.176  Sum_probs=40.7

Q ss_pred             hHHHHHHHHcCCeEE--EeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCc
Q 046574           12 HSLLLMRKAFKGTFL--VAGGY-DREDGNKAIAEGRADLVVYGRFFLANPD   59 (104)
Q Consensus        12 ~~~~~ir~~~~~pvi--~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPd   59 (104)
                      +.++.+++..+.||+  +.||| +++++..+++.| +|.|++|+.+...+|
T Consensus       184 elLk~l~~~~~iPVV~iAeGGI~Tpena~~v~e~G-AdgVaVGSAI~~a~d  233 (283)
T cd04727         184 ELVKETAKLGRLPVVNFAAGGVATPADAALMMQLG-ADGVFVGSGIFKSEN  233 (283)
T ss_pred             HHHHHHHHhcCCCeEEEEeCCCCCHHHHHHHHHcC-CCEEEEcHHhhcCCC
Confidence            466778888888997  99999 999999999988 899999999996444

Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.

>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional

Probab=97.05  E-value=0.00078  Score=50.71  Aligned_cols=55  Identities=24%  Similarity=0.196  Sum_probs=44.3

Q ss_pred             hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHhh
Q 046574           12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEF   66 (104)
Q Consensus        12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~~   66 (104)
                      +..+.+++.+++|||++||+ +.+++++++++..+|.|.+|++|.-.-|-+.+++.
T Consensus       186 ~~i~~~~~~~~ipvIasGGv~s~eD~~~l~~~~GvdgVivg~a~~~~~~~~~~~~~  241 (258)
T PRK01033        186 ELLKSFRNALKIPLIALGGAGSLDDIVEAILNLGADAAAAGSLFVFKGVYKAVLIN  241 (258)
T ss_pred             HHHHHHHhhCCCCEEEeCCCCCHHHHHHHHHHCCCCEEEEcceeeeCccccccccc
Confidence            35567888888999999999 99999999944448999999999887555555543

>PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1

Probab=97.04  E-value=0.0018  Score=50.38  Aligned_cols=47  Identities=36%  Similarity=0.393  Sum_probs=38.2

Q ss_pred             hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCc
Q 046574           12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPD   59 (104)
Q Consensus        12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPd   59 (104)
                      .+...+++.+++|||++||| +...+..++.-| +|.|.+|..|++-++
T Consensus       180 ~L~~~v~~~~~iPViaAGGI~dg~~iaaal~lG-A~gV~~GTrFl~t~E  227 (330)
T PF03060_consen  180 SLLPQVRDAVDIPVIAAGGIADGRGIAAALALG-ADGVQMGTRFLATEE  227 (330)
T ss_dssp             HHHHHHHHH-SS-EEEESS--SHHHHHHHHHCT--SEEEESHHHHTSTT
T ss_pred             eHHHHHhhhcCCcEEEecCcCCHHHHHHHHHcC-CCEeecCCeEEeccc
Confidence            35667888899999999999 999999999998 899999999998654

13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A.

>TIGR00693 thiE thiamine-phosphate pyrophosphorylase

Probab=97.03  E-value=0.0033  Score=44.67  Aligned_cols=52  Identities=19%  Similarity=0.165  Sum_probs=41.6

Q ss_pred             hHHHHHHHHc-CCeEEEeCCCCHHHHHHHHHcCCCcEEecchHHhhCCcHHHHH
Q 046574           12 HSLLLMRKAF-KGTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANPDLPRRF   64 (104)
Q Consensus        12 ~~~~~ir~~~-~~pvi~~Ggi~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri   64 (104)
                      ...+.+.+.. +.||++.|||+++.+.+++..| +|.|++++.++...|-...+
T Consensus       141 ~~l~~~~~~~~~~pv~a~GGI~~~~~~~~~~~G-~~gva~~~~i~~~~dp~~~~  193 (196)
T TIGR00693       141 ELLREIAATSIDIPIVAIGGITLENAAEVLAAG-ADGVAVVSAIMQAADPKAAA  193 (196)
T ss_pred             HHHHHHHHhcCCCCEEEECCcCHHHHHHHHHcC-CCEEEEhHHhhCCCCHHHHH
Confidence            3445555554 4799999999999999999888 79999999999887754443

This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.

>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1

Probab=97.00  E-value=0.0028  Score=49.07  Aligned_cols=47  Identities=28%  Similarity=0.248  Sum_probs=40.6

Q ss_pred             hHHHHHHHHcCCeEE--EeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCc
Q 046574           12 HSLLLMRKAFKGTFL--VAGGY-DREDGNKAIAEGRADLVVYGRFFLANPD   59 (104)
Q Consensus        12 ~~~~~ir~~~~~pvi--~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPd   59 (104)
                      +.++.+++..+.||+  +.||| ||+++..+++.| +|.|++|+.+...+|
T Consensus       187 elLkei~~~~~iPVV~fAiGGI~TPedAa~~melG-AdGVaVGSaI~ks~d  236 (287)
T TIGR00343       187 ELLLEVLKLGKLPVVNFAAGGVATPADAALMMQLG-ADGVFVGSGIFKSSN  236 (287)
T ss_pred             HHHHHHHHhCCCCEEEeccCCCCCHHHHHHHHHcC-CCEEEEhHHhhcCCC
Confidence            566777777788998  99999 999999999998 899999999986433

This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.

>PRK06512 thiamine-phosphate pyrophosphorylase; Provisional

Probab=97.00  E-value=0.0041  Score=46.12  Aligned_cols=52  Identities=17%  Similarity=0.185  Sum_probs=44.8

Q ss_pred             HHHHHHHHcCCeEEEeCCCCHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHh
Q 046574           13 SLLLMRKAFKGTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANPDLPRRFE   65 (104)
Q Consensus        13 ~~~~ir~~~~~pvi~~Ggi~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~   65 (104)
                      ..+.+++.+++||++-|||+++.+.++++.| +|.|++-+.++..+|.....+
T Consensus       155 ~l~~~~~~~~iPvvAIGGI~~~n~~~~~~~G-A~giAvisai~~~~dp~~a~~  206 (221)
T PRK06512        155 LAEWWAEMIEIPCIVQAGSDLASAVEVAETG-AEFVALERAVFDAHDPPLAVA  206 (221)
T ss_pred             HHHHHHHhCCCCEEEEeCCCHHHHHHHHHhC-CCEEEEhHHhhCCCCHHHHHH
Confidence            4455677788999999999999999999999 899999999998888765554

>PRK14024 phosphoribosyl isomerase A; Provisional

Probab=96.95  E-value=0.0033  Score=46.85  Aligned_cols=53  Identities=11%  Similarity=0.033  Sum_probs=42.0

Q ss_pred             hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHH--cCCCcEEecchHHhhCCcHHHHH
Q 046574           12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIA--EGRADLVVYGRFFLANPDLPRRF   64 (104)
Q Consensus        12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~--~g~~DlVa~gR~~lanPdl~~ri   64 (104)
                      +..+.+++..+.|||++||+ +++++.++..  .-.+|.|.+||++...+-=...+
T Consensus       180 ~~i~~i~~~~~ipviasGGi~s~~D~~~l~~~~~~GvdgV~igra~~~g~~~~~~~  235 (241)
T PRK14024        180 ELLREVCARTDAPVVASGGVSSLDDLRALAELVPLGVEGAIVGKALYAGAFTLPEA  235 (241)
T ss_pred             HHHHHHHhhCCCCEEEeCCCCCHHHHHHHhhhccCCccEEEEeHHHHcCCCCHHHH
Confidence            35567778888999999999 9999998863  22389999999999887554443

>TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type

Probab=96.95  E-value=0.0031  Score=48.00  Aligned_cols=55  Identities=16%  Similarity=0.256  Sum_probs=46.9

Q ss_pred             hHHHHHHHHcCCeEEEeCCCCHHHHHHHHHcCCCcEEecchHHhhC----CcHHHHHhhC
Q 046574           12 HSLLLMRKAFKGTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLAN----PDLPRRFEFN   67 (104)
Q Consensus        12 ~~~~~ir~~~~~pvi~~Ggi~~~~ae~~l~~g~~DlVa~gR~~lan----Pdl~~ri~~g   67 (104)
                      +..+.|.+.+++||...|||+.++++++++.| +|-|.+|..++.|    |++..++.+-
T Consensus        66 ~~i~~i~~~~~~~v~vGGGIr~e~v~~~l~aG-a~rVvIGS~av~~~~i~~~~~~~i~~~  124 (253)
T TIGR02129        66 DAAKEALHAYPGGLQVGGGINDTNAQEWLDEG-ASHVIVTSWLFTKGKFDLKRLKEIVSL  124 (253)
T ss_pred             HHHHHHHHhCCCCEEEeCCcCHHHHHHHHHcC-CCEEEECcHHHhCCCCCHHHHHHHHHH
Confidence            34556667778899999999559999999999 8999999999998    7798888763

This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut.

>PLN02334 ribulose-phosphate 3-epimerase

Probab=96.94  E-value=0.0041  Score=45.80  Aligned_cols=52  Identities=25%  Similarity=0.398  Sum_probs=41.7

Q ss_pred             HHHHHHHHc-CCeEEEeCCCCHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHh
Q 046574           13 SLLLMRKAF-KGTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANPDLPRRFE   65 (104)
Q Consensus        13 ~~~~ir~~~-~~pvi~~Ggi~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~   65 (104)
                      .++.+++.. +.|+.+.|||+++.+.++++.| +|.|++|+++...+|....++
T Consensus       164 ~i~~~~~~~~~~~I~a~GGI~~e~i~~l~~aG-ad~vvvgsai~~~~d~~~~~~  216 (229)
T PLN02334        164 KVRALRKKYPELDIEVDGGVGPSTIDKAAEAG-ANVIVAGSAVFGAPDYAEVIS  216 (229)
T ss_pred             HHHHHHHhCCCCcEEEeCCCCHHHHHHHHHcC-CCEEEEChHHhCCCCHHHHHH
Confidence            334455553 3589999999999999999999 799999999998888655444

>PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional

Probab=96.89  E-value=0.0029  Score=47.51  Aligned_cols=52  Identities=13%  Similarity=0.130  Sum_probs=44.2

Q ss_pred             HHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHhh
Q 046574           13 SLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEF   66 (104)
Q Consensus        13 ~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~~   66 (104)
                      ..+.|.+.+ .||.+.||| +.++++.+++.| +|-|.+|...+.||+|+.++..
T Consensus        65 ~i~~i~~~~-~~v~vGGGIrs~e~~~~~l~~G-a~rvvigT~a~~~p~~l~~~~~  117 (241)
T PRK14114         65 VLEKLSEFA-EHIQIGGGIRSLDYAEKLRKLG-YRRQIVSSKVLEDPSFLKFLKE  117 (241)
T ss_pred             HHHHHHhhc-CcEEEecCCCCHHHHHHHHHCC-CCEEEECchhhCCHHHHHHHHH
Confidence            334455545 699999999 999999999998 7999999999999999999853

>TIGR02708 L_lactate_ox L-lactate oxidase

Probab=96.85  E-value=0.0027  Score=50.61  Aligned_cols=44  Identities=32%  Similarity=0.361  Sum_probs=37.4

Q ss_pred             hHHHHHHHHcC--CeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhh
Q 046574           12 HSLLLMRKAFK--GTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLA   56 (104)
Q Consensus        12 ~~~~~ir~~~~--~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~la   56 (104)
                      +.+..+++.++  +|||++||| +..++.++|.-| +|+|++||++|-
T Consensus       271 ~~L~ei~~av~~~i~vi~dGGIr~g~Dv~KaLalG-Ad~V~igR~~l~  317 (367)
T TIGR02708       271 DSLQEVAEAVDKRVPIVFDSGVRRGQHVFKALASG-ADLVALGRPVIY  317 (367)
T ss_pred             HHHHHHHHHhCCCCcEEeeCCcCCHHHHHHHHHcC-CCEEEEcHHHHH
Confidence            34556777674  699999999 999999999988 899999999874

Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence.

>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional

Probab=96.83  E-value=0.0029  Score=49.71  Aligned_cols=48  Identities=29%  Similarity=0.452  Sum_probs=40.6

Q ss_pred             HHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHH
Q 046574           13 SLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLP   61 (104)
Q Consensus        13 ~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~   61 (104)
                      ....+++..++|||+.||| ++.++.++|..| +|+|.+|++|+...+-|
T Consensus       192 ai~~~~~~~~ipVIAdGGI~~~~Di~KaLa~G-A~aV~vG~~~~~~~esp  240 (326)
T PRK05458        192 ALRWCAKAARKPIIADGGIRTHGDIAKSIRFG-ATMVMIGSLFAGHEESP  240 (326)
T ss_pred             HHHHHHHHcCCCEEEeCCCCCHHHHHHHHHhC-CCEEEechhhcCCccCC
Confidence            3556777778899999999 999999999998 89999999999655543

>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional

Probab=96.81  E-value=0.0036  Score=46.71  Aligned_cols=53  Identities=17%  Similarity=0.201  Sum_probs=44.0

Q ss_pred             HHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHhhC
Q 046574           14 LLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEFN   67 (104)
Q Consensus        14 ~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~~g   67 (104)
                      .+.+.+....||.+.||| |.++++.+++.| +|-|.+|...+.||++..++.+.
T Consensus        65 i~~i~~~~~~~v~vGGGIrs~e~~~~~l~~G-a~kvvigt~a~~~p~~~~~~~~~  118 (232)
T PRK13586         65 IKEISKIGFDWIQVGGGIRDIEKAKRLLSLD-VNALVFSTIVFTNFNLFHDIVRE  118 (232)
T ss_pred             HHHHHhhCCCCEEEeCCcCCHHHHHHHHHCC-CCEEEECchhhCCHHHHHHHHHH
Confidence            334444222499999999 999999999998 79999999999999999998764

>PF01884 PcrB: PcrB family; InterPro: IPR008205 This entry represents geranylgeranylglyceryl phosphate (GGGP) synthase, which is a prenyltransferase that catalyses the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C3 hydroxyl of sn-glycerol-1-phosphate (G1P)

Probab=96.81  E-value=0.0026  Score=47.82  Aligned_cols=44  Identities=30%  Similarity=0.434  Sum_probs=35.9

Q ss_pred             HHHHH-cCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcH
Q 046574           16 LMRKA-FKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDL   60 (104)
Q Consensus        16 ~ir~~-~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl   60 (104)
                      .+++. .+.|||..||| |+++|+++++.| +|.|.+|-.+=.||++
T Consensus       175 ~~~~~~~~~~LivGGGIrs~e~A~~~~~aG-AD~IVvGn~iee~~~~  220 (230)
T PF01884_consen  175 AAVKKLSDIPLIVGGGIRSPEQAREMAEAG-ADTIVVGNAIEEDPDL  220 (230)
T ss_dssp             HHHHHSSSSEEEEESS--SHHHHHHHHCTT-SSEEEESCHHHHHH-H
T ss_pred             HHHHhcCCccEEEeCCcCCHHHHHHHHHCC-CCEEEECCEEEEcchH
Confidence            34444 46799999999 999999999998 7999999999888873

This reaction is the first ether-bond-formation step in the biosynthesis of archaeal membrane lipids. This entry also matches putative glycerol-1-phosphate prenyltransferases that may catalyse the transfer of a prenyl moiety to sn-glycerol-1-phosphate (G1P) []. Some of the prokaryotic proteins in this family are related to pcrB. The Staphylococcus aureus chromosomal gene pcrA encodes a protein with significant similarity (40% identity) to two Escherichia coli helicases: the helicase II encoded by the uvrD gene and the Rep helicase. PcrB gene seems to belong to an operon containing at least one other gene, pcrBA, downstream from pcrB []. The PcrB proteins often contain an FMN binding site although the function of these proteins is still unknown.; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 1VIZ_A 2F6X_B 2F6U_B 3VKD_A 3VKA_A 3VK5_B 3VKC_B 3VKB_B.

>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated

Probab=96.81  E-value=0.0048  Score=49.43  Aligned_cols=50  Identities=32%  Similarity=0.465  Sum_probs=43.3

Q ss_pred             hHHHHHHHHcCCeEEEeCCCCHHHHHHHHHcCCCcEEecchHHhhCCcHHH
Q 046574           12 HSLLLMRKAFKGTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANPDLPR   62 (104)
Q Consensus        12 ~~~~~ir~~~~~pvi~~Ggi~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~   62 (104)
                      ..++.+++..+.||++.|||+.+.+.++++.| +|.|++|+.+...+|+..
T Consensus       152 ~~l~~l~~~~~iPI~a~GGI~~~n~~~~l~aG-Adgv~vGsaI~~~~d~~~  201 (430)
T PRK07028        152 ELLKEVSEEVSIPIAVAGGLDAETAAKAVAAG-ADIVIVGGNIIKSADVTE  201 (430)
T ss_pred             HHHHHHHhhCCCcEEEECCCCHHHHHHHHHcC-CCEEEEChHHcCCCCHHH
Confidence            35566777777899999999999999999999 799999999999888643

>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism

Probab=96.81  E-value=0.0036  Score=47.58  Aligned_cols=50  Identities=22%  Similarity=0.302  Sum_probs=42.1

Q ss_pred             chHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhh--CCcHH
Q 046574           11 PHSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLA--NPDLP   61 (104)
Q Consensus        11 ~~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~la--nPdl~   61 (104)
                      ++..+.+++..++|||+.||| +++++.++++-| +|.|.++-+...  ||...
T Consensus       164 ~~~I~~I~e~~~vpVI~egGI~tpeda~~AmelG-AdgVlV~SAIt~a~dP~~m  216 (248)
T cd04728         164 PYNLRIIIERADVPVIVDAGIGTPSDAAQAMELG-ADAVLLNTAIAKAKDPVAM  216 (248)
T ss_pred             HHHHHHHHHhCCCcEEEeCCCCCHHHHHHHHHcC-CCEEEEChHhcCCCCHHHH
Confidence            456677888878899999999 999999999999 899999988875  35543

ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).

>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional

Probab=96.77  E-value=0.0044  Score=44.73  Aligned_cols=45  Identities=16%  Similarity=0.194  Sum_probs=38.8

Q ss_pred             chHHHHHHHHc-CCeEEEeCCCCHHHHHHHHHcCCCcEEecchHHhh
Q 046574           11 PHSLLLMRKAF-KGTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLA   56 (104)
Q Consensus        11 ~~~~~~ir~~~-~~pvi~~Ggi~~~~ae~~l~~g~~DlVa~gR~~la   56 (104)
                      ....+.++..+ +.|+++.|||+++.+.+.++.| ++.|+++..++.
T Consensus       140 ~~~l~~~~~~~~~ipvvaiGGI~~~n~~~~l~aG-a~~vav~s~i~~  185 (187)
T PRK07455        140 ADYIKSLQGPLGHIPLIPTGGVTLENAQAFIQAG-AIAVGLSGQLFP  185 (187)
T ss_pred             HHHHHHHHhhCCCCcEEEeCCCCHHHHHHHHHCC-CeEEEEehhccc
Confidence            45677788888 4899999999999999999998 799999987653

>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain

Probab=96.75  E-value=0.0041  Score=49.27  Aligned_cols=46  Identities=33%  Similarity=0.333  Sum_probs=38.8

Q ss_pred             hHHHHHHHHc--CCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCC
Q 046574           12 HSLLLMRKAF--KGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANP   58 (104)
Q Consensus        12 ~~~~~ir~~~--~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanP   58 (104)
                      ..+..+++.+  ++|||+.||| +..++-++|.-| +|+|.+||+++--.
T Consensus       264 ~~l~~i~~a~~~~i~vi~dGGIr~g~Di~kaLalG-A~~V~iGr~~l~~l  312 (351)
T cd04737         264 DSLPEIAEAVNHRVPIIFDSGVRRGEHVFKALASG-ADAVAVGRPVLYGL  312 (351)
T ss_pred             HHHHHHHHHhCCCCeEEEECCCCCHHHHHHHHHcC-CCEEEECHHHHHHH
Confidence            3445677767  4799999999 999999999988 89999999999754

LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).

>PRK04302 triosephosphate isomerase; Provisional

Probab=96.75  E-value=0.0054  Score=45.05  Aligned_cols=53  Identities=21%  Similarity=0.204  Sum_probs=43.5

Q ss_pred             hHHHHHHHHc-CCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHh
Q 046574           12 HSLLLMRKAF-KGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLPRRFE   65 (104)
Q Consensus        12 ~~~~~ir~~~-~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~   65 (104)
                      +..+.+|+.. +.||+..||| +++.++.+++.| +|.|.+|..++.-+|+...+.
T Consensus       162 ~~~~~ir~~~~~~pvi~GggI~~~e~~~~~~~~g-adGvlVGsa~l~~~~~~~~~~  216 (223)
T PRK04302        162 DAVEAVKKVNPDVKVLCGAGISTGEDVKAALELG-ADGVLLASGVVKAKDPEAALR  216 (223)
T ss_pred             HHHHHHHhccCCCEEEEECCCCCHHHHHHHHcCC-CCEEEEehHHhCCcCHHHHHH
Confidence            3445577654 4699999999 899999998777 899999999999999876654

>TIGR00734 hisAF_rel hisA/hisF family protein

Probab=96.73  E-value=0.0043  Score=45.86  Aligned_cols=43  Identities=16%  Similarity=0.101  Sum_probs=37.2

Q ss_pred             hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHh
Q 046574           12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFL   55 (104)
Q Consensus        12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~l   55 (104)
                      +..+.+++..+.|||++||+ ++++++++...| +|.|.+|+.+-
T Consensus       174 eli~~i~~~~~~pvia~GGi~s~ed~~~l~~~G-a~~vivgsal~  217 (221)
T TIGR00734       174 ELLTKTLELSEHPVMLGGGISGVEDLELLKEMG-VSAVLVATAVH  217 (221)
T ss_pred             HHHHHHHhhCCCCEEEeCCCCCHHHHHHHHHCC-CCEEEEhHHhh
Confidence            45677888888899999999 999999988777 89999999874

This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown.

>PLN02495 oxidoreductase, acting on the CH-CH group of donors

Probab=96.72  E-value=0.0021  Score=51.44  Aligned_cols=46  Identities=20%  Similarity=0.127  Sum_probs=43.0

Q ss_pred             CeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhC-CcHHHHHhhCCC
Q 046574           23 GTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLAN-PDLPRRFEFNAP   69 (104)
Q Consensus        23 ~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lan-Pdl~~ri~~g~~   69 (104)
                      .|+|++||| +.++|-+.|..| +++|.++..++.+ |+++.++..+..
T Consensus       271 ipIiGvGGI~s~~Da~e~i~aG-As~VQv~Ta~~~~Gp~vi~~i~~~L~  318 (385)
T PLN02495        271 RSLSGIGGVETGGDAAEFILLG-ADTVQVCTGVMMHGYPLVKNLCAELQ  318 (385)
T ss_pred             CcEEEECCCCCHHHHHHHHHhC-CCceeEeeeeeecCcHHHHHHHHHHH
Confidence            699999999 999999999999 7999999999999 999999988773

>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase

Probab=96.72  E-value=0.0037  Score=46.13  Aligned_cols=40  Identities=33%  Similarity=0.513  Sum_probs=35.9

Q ss_pred             chHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecc
Q 046574           11 PHSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYG   51 (104)
Q Consensus        11 ~~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~g   51 (104)
                      .+..+.+|+..+.|++..||| ++++++++++.| +|.|.+|
T Consensus       165 ~e~i~~Vk~~~~~Pv~vGGGIrs~e~a~~l~~~G-AD~VVVG  205 (205)
T TIGR01769       165 PETISLVKKASGIPLIVGGGIRSPEIAYEIVLAG-ADAIVTG  205 (205)
T ss_pred             HHHHHHHHHhhCCCEEEeCCCCCHHHHHHHHHcC-CCEEEeC
Confidence            467788999999999999999 999999999888 8999876

This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.

>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed

Probab=96.64  E-value=0.011  Score=43.39  Aligned_cols=46  Identities=20%  Similarity=0.262  Sum_probs=39.9

Q ss_pred             chHHHHHHHHc--CCeEEEeCCCCHHHHHHHHHcCCCcEEecchHHhhC
Q 046574           11 PHSLLLMRKAF--KGTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLAN   57 (104)
Q Consensus        11 ~~~~~~ir~~~--~~pvi~~Ggi~~~~ae~~l~~g~~DlVa~gR~~lan   57 (104)
                      .+..+.+++.+  +.|+++.|||+++.+.+.++.| +|.|++++.+...
T Consensus       138 ~~~l~~l~~~~~~~ipvvaiGGI~~~n~~~~~~aG-a~~vav~s~l~~~  185 (206)
T PRK09140        138 PAGIKALRAVLPPDVPVFAVGGVTPENLAPYLAAG-AAGFGLGSALYRP  185 (206)
T ss_pred             HHHHHHHHhhcCCCCeEEEECCCCHHHHHHHHHCC-CeEEEEehHhccc
Confidence            45667788877  3899999999999999999999 7999999999864

>cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain

Probab=96.64  E-value=0.0056  Score=48.72  Aligned_cols=43  Identities=33%  Similarity=0.333  Sum_probs=38.3

Q ss_pred             hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHh
Q 046574           12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFL   55 (104)
Q Consensus        12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~l   55 (104)
                      +.+..+++.++.|||+.||| +..++-++|.-| +|+|++||++|
T Consensus       279 ~~L~ei~~~~~~~vi~dGGIr~g~Dv~KALaLG-A~aV~iGr~~l  322 (361)
T cd04736         279 EALAEIVAATYKPVLIDSGIRRGSDIVKALALG-ANAVLLGRATL  322 (361)
T ss_pred             HHHHHHHHHhCCeEEEeCCCCCHHHHHHHHHcC-CCEEEECHHHH
Confidence            35556777788899999999 999999999999 79999999999

MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).

>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure

Probab=96.63  E-value=0.0046  Score=42.36  Aligned_cols=37  Identities=38%  Similarity=0.583  Sum_probs=31.4

Q ss_pred             HHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecch
Q 046574           15 LLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGR   52 (104)
Q Consensus        15 ~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR   52 (104)
                      ..+++..+.||+++||+ +++.+.++++.| +|.|.+||
T Consensus       163 ~~~~~~~~~pi~~~GGi~~~~~~~~~~~~G-ad~v~vgs  200 (200)
T cd04722         163 ILAKRGSKVPVIAGGGINDPEDAAEALALG-ADGVIVGS  200 (200)
T ss_pred             HHHHhcCCCCEEEECCCCCHHHHHHHHHhC-CCEEEecC
Confidence            34555667899999999 779999999997 89999986

Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.

>PRK00208 thiG thiazole synthase; Reviewed

Probab=96.58  E-value=0.011  Score=45.09  Aligned_cols=45  Identities=22%  Similarity=0.318  Sum_probs=40.0

Q ss_pred             chHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhh
Q 046574           11 PHSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLA   56 (104)
Q Consensus        11 ~~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~la   56 (104)
                      ++.++.+++..++|||+.||| +++++.++++-| +|.|.++-....
T Consensus       164 ~~~i~~i~e~~~vpVIveaGI~tpeda~~AmelG-AdgVlV~SAItk  209 (250)
T PRK00208        164 PYNLRIIIEQADVPVIVDAGIGTPSDAAQAMELG-ADAVLLNTAIAV  209 (250)
T ss_pred             HHHHHHHHHhcCCeEEEeCCCCCHHHHHHHHHcC-CCEEEEChHhhC
Confidence            456778888878899999999 999999999998 899999988876

>PRK02615 thiamine-phosphate pyrophosphorylase; Provisional

Probab=96.57  E-value=0.0099  Score=47.07  Aligned_cols=52  Identities=19%  Similarity=0.217  Sum_probs=43.2

Q ss_pred             hHHHHHHHHcCCeEEEeCCCCHHHHHHHHHcCCCcEEecchHHhhCCcHHHHH
Q 046574           12 HSLLLMRKAFKGTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANPDLPRRF   64 (104)
Q Consensus        12 ~~~~~ir~~~~~pvi~~Ggi~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri   64 (104)
                      +.+..+.+..+.|+++-|||+++.+.+++..| +|.|++++.++..+|-....
T Consensus       284 e~l~~~~~~~~iPv~AiGGI~~~ni~~l~~~G-a~gVAvisaI~~a~dp~~~~  335 (347)
T PRK02615        284 EYLKYAAKEAPIPWFAIGGIDKSNIPEVLQAG-AKRVAVVRAIMGAEDPKQAT  335 (347)
T ss_pred             HHHHHHHHhCCCCEEEECCCCHHHHHHHHHcC-CcEEEEeHHHhCCCCHHHHH
Confidence            45556666778899999999999999999998 89999999999877754433

>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase

Probab=96.53  E-value=0.0099  Score=42.62  Aligned_cols=51  Identities=25%  Similarity=0.294  Sum_probs=40.0

Q ss_pred             HHHHHHHHcCC-eEEEeCCCCHHHHHHHHHcCCCcEEecchHHhhCCcHHHHH
Q 046574           13 SLLLMRKAFKG-TFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANPDLPRRF   64 (104)
Q Consensus        13 ~~~~ir~~~~~-pvi~~Ggi~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri   64 (104)
                      ..+.+++.+.. ++++.||++++.+.++++.| +|.|++||.+...+|....+
T Consensus       148 ~i~~l~~~~~~~~i~v~GGI~~~n~~~~~~~G-a~~v~vGsai~~~~d~~~~~  199 (206)
T TIGR03128       148 DLQTILKLVKEARVAVAGGINLDTIPDVIKLG-PDIVIVGGAITKAADPAEAA  199 (206)
T ss_pred             HHHHHHHhcCCCcEEEECCcCHHHHHHHHHcC-CCEEEEeehhcCCCCHHHHH
Confidence            44566666665 45568999999999999988 79999999999888754443

at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.

>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional

Probab=96.51  E-value=0.013  Score=43.38  Aligned_cols=45  Identities=22%  Similarity=0.305  Sum_probs=39.4

Q ss_pred             chHHHHHHHHcC-CeEEEeCCCCHHHHHHHHHcCCCcEEecchHHhh
Q 046574           11 PHSLLLMRKAFK-GTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLA   56 (104)
Q Consensus        11 ~~~~~~ir~~~~-~pvi~~Ggi~~~~ae~~l~~g~~DlVa~gR~~la   56 (104)
                      ....+.++..++ .|++.+|||+++.+.+.++.| +|.|++|..+..
T Consensus       143 ~~~ik~l~~~~p~ip~~atGGI~~~N~~~~l~aG-a~~vavgs~l~~  188 (213)
T PRK06552        143 PSFIKAIKGPLPQVNVMVTGGVNLDNVKDWFAAG-ADAVGIGGELNK  188 (213)
T ss_pred             HHHHHHHhhhCCCCEEEEECCCCHHHHHHHHHCC-CcEEEEchHHhC
Confidence            456777888887 799999999999999999999 799999999863

>COG2070 Dioxygenases related to 2-nitropropane dioxygenase [General function prediction only]

Probab=96.48  E-value=0.0038  Score=49.09  Aligned_cols=47  Identities=32%  Similarity=0.316  Sum_probs=41.4

Q ss_pred             hHHHHHHHHcC-CeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCc
Q 046574           12 HSLLLMRKAFK-GTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPD   59 (104)
Q Consensus        12 ~~~~~ir~~~~-~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPd   59 (104)
                      .+...+++.++ +|||++||| +.+.+..++.-| +|.|-+|..|++..+
T Consensus       173 ~Lv~ev~~~~~~iPViAAGGI~dg~~i~AAlalG-A~gVq~GT~Fl~t~E  221 (336)
T COG2070         173 ALVPEVVDAVDGIPVIAAGGIADGRGIAAALALG-ADGVQMGTRFLATKE  221 (336)
T ss_pred             HHHHHHHHHhcCCCEEEecCccChHHHHHHHHhc-cHHHHhhhhhhcccc
Confidence            35677888999 799999999 999999999999 799999999997543

>TIGR00262 trpA tryptophan synthase, alpha subunit

Probab=96.47  E-value=0.011  Score=44.59  Aligned_cols=45  Identities=24%  Similarity=0.244  Sum_probs=39.1

Q ss_pred             chHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhh
Q 046574           11 PHSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLA   56 (104)
Q Consensus        11 ~~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~la   56 (104)
                      .+..+.+|+..+.||++.||| +++++.++++.| +|.|.+|..++.
T Consensus       187 ~~~i~~lr~~~~~pi~vgfGI~~~e~~~~~~~~G-ADgvVvGSaiv~  232 (256)
T TIGR00262       187 NELVKRLKAYSAKPVLVGFGISKPEQVKQAIDAG-ADGVIVGSAIVK  232 (256)
T ss_pred             HHHHHHHHhhcCCCEEEeCCCCCHHHHHHHHHcC-CCEEEECHHHHH
Confidence            356778888888899999999 799999999888 799999999873

Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.

>PRK03512 thiamine-phosphate pyrophosphorylase; Provisional

Probab=96.47  E-value=0.015  Score=42.77  Aligned_cols=51  Identities=14%  Similarity=0.066  Sum_probs=42.8

Q ss_pred             HHHHHHH-cCCeEEEeCCCCHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHh
Q 046574           14 LLLMRKA-FKGTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANPDLPRRFE   65 (104)
Q Consensus        14 ~~~ir~~-~~~pvi~~Ggi~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~   65 (104)
                      +..+.+. .+.||++-|||+++.+.+++..| ++.|++-+.++..+|....++
T Consensus       149 l~~~~~~~~~~PV~AiGGI~~~ni~~l~~~G-a~GiAvisai~~~~d~~~~~~  200 (211)
T PRK03512        149 LARHVERLADYPTVAIGGISLERAPAVLATG-VGSIAVVSAITQAADWRAATA  200 (211)
T ss_pred             HHHHHHhcCCCCEEEECCCCHHHHHHHHHcC-CCEEEEhhHhhCCCCHHHHHH
Confidence            3444444 46899999999999999999998 899999999999998776654

>PRK08883 ribulose-phosphate 3-epimerase; Provisional

Probab=96.45  E-value=0.013  Score=43.51  Aligned_cols=52  Identities=23%  Similarity=0.374  Sum_probs=40.8

Q ss_pred             HHHHHHHHcC-----CeEEEeCCCCHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHh
Q 046574           13 SLLLMRKAFK-----GTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANPDLPRRFE   65 (104)
Q Consensus        13 ~~~~ir~~~~-----~pvi~~Ggi~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~   65 (104)
                      ..+.+++..+     .|+.+-|||+++.+.++++.| +|.+++|+.+...+|....++
T Consensus       153 kI~~l~~~~~~~~~~~~I~vdGGI~~eni~~l~~aG-Ad~vVvGSaIf~~~d~~~~i~  209 (220)
T PRK08883        153 KLRAVRKMIDESGRDIRLEIDGGVKVDNIREIAEAG-ADMFVAGSAIFGQPDYKAVID  209 (220)
T ss_pred             HHHHHHHHHHhcCCCeeEEEECCCCHHHHHHHHHcC-CCEEEEeHHHhCCCCHHHHHH
Confidence            3445555553     578788999999999999999 799999999988888655443

>PLN02535 glycolate oxidase

Probab=96.43  E-value=0.0079  Score=47.91  Aligned_cols=46  Identities=30%  Similarity=0.305  Sum_probs=38.5

Q ss_pred             HHHHHHHHc--CCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCc
Q 046574           13 SLLLMRKAF--KGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPD   59 (104)
Q Consensus        13 ~~~~ir~~~--~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPd   59 (104)
                      .+..+++.+  ++|||+.||| +..++-++|.-| +|+|.+||++|..+.
T Consensus       267 ~L~ev~~av~~~ipVi~dGGIr~g~Dv~KALalG-A~aV~vGr~~l~~l~  315 (364)
T PLN02535        267 VLEEVVQAVGGRVPVLLDGGVRRGTDVFKALALG-AQAVLVGRPVIYGLA  315 (364)
T ss_pred             HHHHHHHHHhcCCCEEeeCCCCCHHHHHHHHHcC-CCEEEECHHHHhhhh
Confidence            444566655  4799999999 999999999999 799999999998654

>COG1304 idi Isopentenyl diphosphate isomerase (BS_ypgA, MTH48 and related proteins) [Coenzyme transport and metabolism]

Probab=96.36  E-value=0.0053  Score=48.83  Aligned_cols=44  Identities=39%  Similarity=0.374  Sum_probs=38.9

Q ss_pred             hHHHHHHHHcC--CeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhh
Q 046574           12 HSLLLMRKAFK--GTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLA   56 (104)
Q Consensus        12 ~~~~~ir~~~~--~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~la   56 (104)
                      +.+..+++.++  ++||+.||| +..++-++|.-| +|+|++|||+|.
T Consensus       261 ~~L~ei~~av~~~~~vi~dGGiR~G~Dv~KAlALG-A~~v~igrp~L~  307 (360)
T COG1304         261 DSLPEIVEAVGDRIEVIADGGIRSGLDVAKALALG-ADAVGIGRPFLY  307 (360)
T ss_pred             HHHHHHHHHhCCCeEEEecCCCCCHHHHHHHHHhC-CchhhhhHHHHH
Confidence            46677888887  589999999 999999999999 799999999984

>cd02808 GltS_FMN Glutamate synthase (GltS) FMN-binding domain

Probab=96.36  E-value=0.009  Score=47.68  Aligned_cols=34  Identities=35%  Similarity=0.443  Sum_probs=31.9

Q ss_pred             CCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhh
Q 046574           22 KGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLA   56 (104)
Q Consensus        22 ~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~la   56 (104)
                      ++|||++||| ++.++.+++.-| +|+|.+||++|.
T Consensus       285 ~i~viasGGI~~g~Dv~kalaLG-Ad~V~ig~~~l~  319 (392)
T cd02808         285 RVSLIASGGLRTGADVAKALALG-ADAVGIGTAALI  319 (392)
T ss_pred             CCeEEEECCCCCHHHHHHHHHcC-CCeeeechHHHH
Confidence            4799999999 999999999999 899999999995

GltS is a complex iron-sulfur flavoprotein that catalyzes the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the plant, yeast and bacterial pathway for ammonia assimilation. It is a multifunctional enzyme that functions through three distinct active centers, carrying out L-glutamine hydrolysis, conversion of 2-oxoglutarate into L-glutamate, and electron uptake from an electron donor.

>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]

Probab=96.33  E-value=0.009  Score=45.28  Aligned_cols=56  Identities=23%  Similarity=0.268  Sum_probs=49.6

Q ss_pred             HHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHhhCCC
Q 046574           13 SLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEFNAP   69 (104)
Q Consensus        13 ~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~~g~~   69 (104)
                      ..+.|.+.+++||=+.||| |.+.++.+++.| ++-|.+|...+.||+|+.++.+--+
T Consensus        66 ~i~~i~~~~~~~vQvGGGIRs~~~v~~ll~~G-~~rViiGt~av~~p~~v~~~~~~~g  122 (241)
T COG0106          66 AIKEILEATDVPVQVGGGIRSLEDVEALLDAG-VARVIIGTAAVKNPDLVKELCEEYG  122 (241)
T ss_pred             HHHHHHHhCCCCEEeeCCcCCHHHHHHHHHCC-CCEEEEecceecCHHHHHHHHHHcC
Confidence            4566777788899999999 999999999988 7999999999999999999987543

>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional

Probab=96.31  E-value=0.018  Score=42.67  Aligned_cols=50  Identities=24%  Similarity=0.331  Sum_probs=39.6

Q ss_pred             HHHHHHHcC-CeEEEeCCCCHHHHHHHHHcCCCcEEecchHHhhCCcHHHHH
Q 046574           14 LLLMRKAFK-GTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANPDLPRRF   64 (104)
Q Consensus        14 ~~~ir~~~~-~pvi~~Ggi~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri   64 (104)
                      ++.+++..+ ..+.+.|||+++.+..+++.| +|.+.+||++...+|....+
T Consensus       164 i~~~~~~~~~~~I~VdGGI~~~ti~~~~~aG-ad~iVvGsaI~~a~d~~~~~  214 (228)
T PTZ00170        164 VRELRKRYPHLNIQVDGGINLETIDIAADAG-ANVIVAGSSIFKAKDRKQAI  214 (228)
T ss_pred             HHHHHHhcccCeEEECCCCCHHHHHHHHHcC-CCEEEEchHHhCCCCHHHHH
Confidence            344556554 367788999999999999999 79999999998888865444

>PF01070 FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR000262 A number of oxidoreductases that act on alpha-hydroxy acids and which are FMN-containing flavoproteins have been shown [, , ] to be structurally related

Probab=96.31  E-value=0.011  Score=46.75  Aligned_cols=44  Identities=39%  Similarity=0.406  Sum_probs=36.4

Q ss_pred             hHHHHHHHHcC--CeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhh
Q 046574           12 HSLLLMRKAFK--GTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLA   56 (104)
Q Consensus        12 ~~~~~ir~~~~--~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~la   56 (104)
                      +.+..+++.++  .|||+.||| +..++-++|.-| +|+|++||+++.
T Consensus       268 ~~L~~i~~~~~~~~~i~~dgGir~g~Dv~kalaLG-A~~v~igr~~l~  314 (356)
T PF01070_consen  268 DALPEIRAAVGDDIPIIADGGIRRGLDVAKALALG-ADAVGIGRPFLY  314 (356)
T ss_dssp             HHHHHHHHHHTTSSEEEEESS--SHHHHHHHHHTT--SEEEESHHHHH
T ss_pred             cccHHHHhhhcCCeeEEEeCCCCCHHHHHHHHHcC-CCeEEEccHHHH
Confidence            45566788775  699999999 999999999999 799999999984

These enzymes are: Lactate dehydrogenase (1.1.2.3 from EC), which consists of a dehydrogenase domain and a haem-binding domain called cytochrome b2 and which catalyses the conversion of lactate into pyruvate. Glycolate oxidase (1.1.3.15 from EC) ((S)-2-hydroxy-acid oxidase), a peroxisomal enzyme that catalyses the conversion of glycolate and oxygen to glyoxylate and hydrogen peroxide. Long chain alpha-hydroxy acid oxidase from rat (1.1.3.15 from EC), a peroxisomal enzyme. Lactate 2-monooxygenase (1.13.12.4 from EC) (lactate oxidase) from Mycobacterium smegmatis, which catalyses the conversion of lactate and oxygen to acetate, carbon dioxide and water. (S)-mandelate dehydrogenase from Pseudomonas putida (gene mdlB), which catalyses the reduction of (S)-mandelate to benzoylformate. The first step in the reaction mechanism of these enzymes is the abstraction of the proton from the alpha-carbon of the substrate producing a carbanion which can subsequently attach to the N5 atom of FMN. A conserved histidine has been shown [] to be involved in the removal of the proton. The region around this active site residue is highly conserved and contains an arginine residue which is involved in substrate binding.; GO: 0016491 oxidoreductase activity; PDB: 1VCG_C 1VCF_A 1P0N_B 1P0K_A 2A85_A 2A7P_A 3GIY_A 2A7N_A 3DH7_A 2RDU_A ....

>cd00452 KDPG_aldolase KDPG and KHG aldolase

Probab=96.30  E-value=0.013  Score=41.93  Aligned_cols=44  Identities=20%  Similarity=0.348  Sum_probs=37.8

Q ss_pred             chHHHHHHHHcC-CeEEEeCCCCHHHHHHHHHcCCCcEEecchHHh
Q 046574           11 PHSLLLMRKAFK-GTFLVAGGYDREDGNKAIAEGRADLVVYGRFFL   55 (104)
Q Consensus        11 ~~~~~~ir~~~~-~pvi~~Ggi~~~~ae~~l~~g~~DlVa~gR~~l   55 (104)
                      .+..+.+++.+. .|+++.|||+++.+.+.++.| +|.|+++..+.
T Consensus       131 ~~~~~~l~~~~~~~p~~a~GGI~~~n~~~~~~~G-~~~v~v~s~i~  175 (190)
T cd00452         131 PAYIKALKGPFPQVRFMPTGGVSLDNAAEWLAAG-VVAVGGGSLLP  175 (190)
T ss_pred             HHHHHHHHhhCCCCeEEEeCCCCHHHHHHHHHCC-CEEEEEchhcc
Confidence            456666777764 799999999999999999999 89999998876

This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.

>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene []

Probab=96.27  E-value=0.014  Score=42.87  Aligned_cols=49  Identities=22%  Similarity=0.261  Sum_probs=36.0

Q ss_pred             HHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHHHHH
Q 046574           13 SLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLPRRF   64 (104)
Q Consensus        13 ~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri   64 (104)
                      +.+.+.+. +.|||+=|+| +|+++.++++.| ++.|.+|- .|..|.+..++
T Consensus       136 lv~~l~~~-~~pvIaEGri~tpe~a~~al~~G-A~aVVVGs-AITrP~~It~~  185 (192)
T PF04131_consen  136 LVRELVQA-DVPVIAEGRIHTPEQAAKALELG-AHAVVVGS-AITRPQEITKR  185 (192)
T ss_dssp             HHHHHHHT-TSEEEEESS--SHHHHHHHHHTT--SEEEE-H-HHH-HHHHHHH
T ss_pred             HHHHHHhC-CCcEeecCCCCCHHHHHHHHhcC-CeEEEECc-ccCCHHHHHHH
Confidence            44555554 6799999999 999999999999 79999995 56778776543

; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.

>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF)

Probab=96.25  E-value=0.012  Score=43.64  Aligned_cols=54  Identities=20%  Similarity=0.198  Sum_probs=46.6

Q ss_pred             HHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHhhCC
Q 046574           13 SLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEFNA   68 (104)
Q Consensus        13 ~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~~g~   68 (104)
                      ..+.+.+.+..||.+.||+ +.++++.++..| ++-|.+|...+.| +|..++.+.-
T Consensus        69 ~i~~i~~~~~~~v~vgGGir~~edv~~~l~~G-a~~viigt~~~~~-~~~~~~~~~~  123 (233)
T cd04723          69 AIRELAAAWPLGLWVDGGIRSLENAQEWLKRG-ASRVIVGTETLPS-DDDEDRLAAL  123 (233)
T ss_pred             HHHHHHHhCCCCEEEecCcCCHHHHHHHHHcC-CCeEEEcceeccc-hHHHHHHHhc
Confidence            4555666667899999999 999999999998 7999999999999 9998887754

The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl

>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain

Probab=96.25  E-value=0.012  Score=47.26  Aligned_cols=43  Identities=33%  Similarity=0.316  Sum_probs=37.0

Q ss_pred             hHHHHHHHHcC--CeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHh
Q 046574           12 HSLLLMRKAFK--GTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFL   55 (104)
Q Consensus        12 ~~~~~ir~~~~--~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~l   55 (104)
                      ..+..+++.++  +|||+.||| +..++-++|.-| +|+|++||+||
T Consensus       296 ~~L~ei~~~~~~~~~vi~dGGIr~G~Dv~KALaLG-A~~v~iGr~~l  341 (383)
T cd03332         296 DALPEIVEAVGDRLTVLFDSGVRTGADIMKALALG-AKAVLIGRPYA  341 (383)
T ss_pred             HHHHHHHHHhcCCCeEEEeCCcCcHHHHHHHHHcC-CCEEEEcHHHH
Confidence            35556777664  699999999 999999999999 79999999999

LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.

>PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase

Probab=96.24  E-value=0.016  Score=44.38  Aligned_cols=53  Identities=19%  Similarity=0.340  Sum_probs=45.9

Q ss_pred             HHHHHHHHcCCeEEEeCCCCHHHHHHHHHcCCCcEEecchHHhhC----CcHHHHHhhC
Q 046574           13 SLLLMRKAFKGTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLAN----PDLPRRFEFN   67 (104)
Q Consensus        13 ~~~~ir~~~~~pvi~~Ggi~~~~ae~~l~~g~~DlVa~gR~~lan----Pdl~~ri~~g   67 (104)
                      ..+.|++ +++||=..|||..++++.+++.| +|-|.+|..++.|    |+|+.++...
T Consensus        75 ~i~~i~~-~~~~vqvGGGIR~e~i~~~l~~G-a~rViigT~Av~~~~~~p~~v~~~~~~  131 (262)
T PLN02446         75 ALEALRA-YPGGLQVGGGVNSENAMSYLDAG-ASHVIVTSYVFRDGQIDLERLKDLVRL  131 (262)
T ss_pred             HHHHHHh-CCCCEEEeCCccHHHHHHHHHcC-CCEEEEchHHHhCCCCCHHHHHHHHHH
Confidence            4455666 77899999999559999999999 8999999999999    9999999773

>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed

Probab=96.23  E-value=0.022  Score=43.12  Aligned_cols=52  Identities=17%  Similarity=0.201  Sum_probs=42.2

Q ss_pred             HHHHHHHHcC--CeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHh
Q 046574           13 SLLLMRKAFK--GTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLPRRFE   65 (104)
Q Consensus        13 ~~~~ir~~~~--~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~   65 (104)
                      ....+.+.+.  .++|+-||| +++++..+++.| +|.|.+|+.++..+|....++
T Consensus       200 ~~~~l~~~~p~~~~vIaegGI~t~ed~~~~~~~G-ad~vlVGsaI~~~~dp~~~~~  254 (260)
T PRK00278        200 TTERLAPLIPSDRLVVSESGIFTPEDLKRLAKAG-ADAVLVGESLMRADDPGAALR  254 (260)
T ss_pred             HHHHHHHhCCCCCEEEEEeCCCCHHHHHHHHHcC-CCEEEECHHHcCCCCHHHHHH
Confidence            3445556553  489999999 999999999998 799999999999998765544

>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase

Probab=96.21  E-value=0.01  Score=46.31  Aligned_cols=40  Identities=30%  Similarity=0.493  Sum_probs=36.4

Q ss_pred             cCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHH
Q 046574           21 FKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLP   61 (104)
Q Consensus        21 ~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~   61 (104)
                      .++|||+.||| ++.++.+++..| +|.|.+|+.|+...+-+
T Consensus       196 ~~vpVIA~GGI~~~~di~kAla~G-A~~VmiGt~fa~t~Es~  236 (325)
T cd00381         196 YGVPVIADGGIRTSGDIVKALAAG-ADAVMLGSLLAGTDESP  236 (325)
T ss_pred             cCCcEEecCCCCCHHHHHHHHHcC-CCEEEecchhcccccCC
Confidence            36899999999 999999999988 89999999999988766

IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.

>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional

Probab=96.18  E-value=0.014  Score=43.42  Aligned_cols=46  Identities=22%  Similarity=0.232  Sum_probs=38.3

Q ss_pred             hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhC
Q 046574           12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLAN   57 (104)
Q Consensus        12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lan   57 (104)
                      +....+++.++.|||++||+ +++++.+++....+|.|.+|+.+...
T Consensus       187 ~~i~~~~~~~~ipvia~GGv~s~~d~~~~~~~~G~~gvivg~al~~~  233 (253)
T PRK02083        187 ELTRAVSDAVNVPVIASGGAGNLEHFVEAFTEGGADAALAASIFHFG  233 (253)
T ss_pred             HHHHHHHhhCCCCEEEECCCCCHHHHHHHHHhCCccEEeEhHHHHcC
Confidence            34567777788999999999 99999999976338999999988754

>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain

Probab=96.18  E-value=0.018  Score=45.44  Aligned_cols=36  Identities=36%  Similarity=0.338  Sum_probs=33.8

Q ss_pred             CeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCc
Q 046574           23 GTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPD   59 (104)
Q Consensus        23 ~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPd   59 (104)
                      +|||+.||| +..++-++|.-| +|+|++||++|..+.
T Consensus       272 ~~vi~~GGIr~G~Dv~kalaLG-A~aV~iG~~~l~~l~  308 (344)
T cd02922         272 IEVYVDGGVRRGTDVLKALCLG-AKAVGLGRPFLYALS  308 (344)
T ss_pred             ceEEEeCCCCCHHHHHHHHHcC-CCEEEECHHHHHHHh
Confidence            699999999 999999999999 799999999999886

FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.

>cd04742 NPD_FabD 2-Nitropropane dioxygenase (NPD)-like domain, associated with the (acyl-carrier-protein) S-malonyltransferase FabD

Probab=96.16  E-value=0.014  Score=47.41  Aligned_cols=37  Identities=30%  Similarity=0.321  Sum_probs=34.0

Q ss_pred             CCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCc
Q 046574           22 KGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPD   59 (104)
Q Consensus        22 ~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPd   59 (104)
                      ++|||++||| |++.+..++.-| +|.|.+|..|++.++
T Consensus       219 ~ipViAAGGI~tg~~vaAA~alG-Ad~V~~GT~flat~E  256 (418)
T cd04742         219 PIRVGAAGGIGTPEAAAAAFALG-ADFIVTGSINQCTVE  256 (418)
T ss_pred             CceEEEECCCCCHHHHHHHHHcC-CcEEeeccHHHhCcc
Confidence            4799999999 999999999999 799999999999654

NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.

>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF)

Probab=96.12  E-value=0.017  Score=42.85  Aligned_cols=45  Identities=18%  Similarity=0.066  Sum_probs=38.6

Q ss_pred             hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhC
Q 046574           12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLAN   57 (104)
Q Consensus        12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lan   57 (104)
                      ...+.+.+..++||++.||+ +++++++++..| ++.|.+|+.+-..
T Consensus       179 ~~~~~i~~~~~ipvi~~GGi~s~edi~~l~~~G-~~~vivGsal~~g  224 (233)
T cd04723         179 ELLERLAARADIPVIAAGGVRSVEDLELLKKLG-ASGALVASALHDG  224 (233)
T ss_pred             HHHHHHHHhcCCCEEEeCCCCCHHHHHHHHHcC-CCEEEEehHHHcC
Confidence            35566777778899999999 999999999988 8999999988654

The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl

>TIGR02814 pfaD_fam PfaD family protein

Probab=96.11  E-value=0.015  Score=47.47  Aligned_cols=37  Identities=27%  Similarity=0.285  Sum_probs=33.9

Q ss_pred             CCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCc
Q 046574           22 KGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPD   59 (104)
Q Consensus        22 ~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPd   59 (104)
                      ++|||++||| |++.+..++.-| +|.|.+|.-|++.++
T Consensus       224 ~VpViAAGGI~t~~~vaAAlaLG-AdgV~~GT~flat~E  261 (444)
T TIGR02814       224 PIRVGAAGGIGTPEAAAAAFMLG-ADFIVTGSVNQCTVE  261 (444)
T ss_pred             CceEEEeCCCCCHHHHHHHHHcC-CcEEEeccHHHhCcc
Confidence            5789999999 999999999999 799999999999654

The protein PfaD is part of four gene locus, similar to polyketide biosynthesis systems, responsible for omega-3 polyunsaturated fatty acid biosynthesis in several high pressure and/or cold-adapted bacteria. Several other members of the seed alignment for this model are found in loci presumed to act in polyketide biosyntheses per se.

>PLN02979 glycolate oxidase

Probab=96.00  E-value=0.019  Score=45.91  Aligned_cols=43  Identities=30%  Similarity=0.272  Sum_probs=36.2

Q ss_pred             HHHHHHHHcC--CeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhh
Q 046574           13 SLLLMRKAFK--GTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLA   56 (104)
Q Consensus        13 ~~~~ir~~~~--~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~la   56 (104)
                      .+..+++.++  ++||+.||| +..++-++|.-| +|+|++||++|.
T Consensus       267 ~L~ei~~~~~~~~~Vi~dGGIr~G~Di~KALALG-AdaV~iGrp~L~  312 (366)
T PLN02979        267 ALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFIGRPVVF  312 (366)
T ss_pred             HHHHHHHHhCCCCeEEEeCCcCcHHHHHHHHHcC-CCEEEEcHHHHH
Confidence            4445666664  699999999 899999999999 799999999993

>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial

Probab=95.96  E-value=0.018  Score=45.21  Aligned_cols=48  Identities=29%  Similarity=0.456  Sum_probs=38.9

Q ss_pred             HHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHH
Q 046574           13 SLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLP   61 (104)
Q Consensus        13 ~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~   61 (104)
                      ....+++.++.|||+.||| +..++.++|.-| +|+|.+||+|...-+-|
T Consensus       189 ai~ev~~a~~~pVIadGGIr~~~Di~KALa~G-Ad~Vmig~~~ag~~Esp  237 (321)
T TIGR01306       189 ALRWCAKAARKPIIADGGIRTHGDIAKSIRFG-ASMVMIGSLFAGHEESP  237 (321)
T ss_pred             HHHHHHHhcCCeEEEECCcCcHHHHHHHHHcC-CCEEeechhhcCcccCC
Confidence            3445667778899999999 888888999988 89999999997644333

A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.

>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional

Probab=95.95  E-value=0.023  Score=42.38  Aligned_cols=43  Identities=14%  Similarity=0.121  Sum_probs=37.7

Q ss_pred             HHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhh
Q 046574           13 SLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLA   56 (104)
Q Consensus        13 ~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~la   56 (104)
                      ..+.+.+..+.|||+.||+ ++++++++++.| +|.|.+|+.+..
T Consensus       183 li~~l~~~~~ipvi~~GGi~s~edi~~l~~~G-~~~vivG~a~~~  226 (234)
T PRK13587        183 LTGQLVKATTIPVIASGGIRHQQDIQRLASLN-VHAAIIGKAAHQ  226 (234)
T ss_pred             HHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcC-CCEEEEhHHHHh
Confidence            4567777778899999999 999999999877 899999998875

>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes

Probab=95.94  E-value=0.021  Score=42.19  Aligned_cols=43  Identities=23%  Similarity=0.256  Sum_probs=36.7

Q ss_pred             hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHh
Q 046574           12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFL   55 (104)
Q Consensus        12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~l   55 (104)
                      +..+.+++.++.|||++||+ +.++..++...| +|.|.+|+.|-
T Consensus       181 ~~~~~l~~~~~~~viasGGv~~~~Dl~~l~~~G-~~gvivg~al~  224 (229)
T PF00977_consen  181 ELLKQLAEAVNIPVIASGGVRSLEDLRELKKAG-IDGVIVGSALH  224 (229)
T ss_dssp             HHHHHHHHHHSSEEEEESS--SHHHHHHHHHTT-ECEEEESHHHH
T ss_pred             HHHHHHHHHcCCCEEEecCCCCHHHHHHHHHCC-CcEEEEehHhh
Confidence            45677888889999999999 999999999888 69999999884

Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....

>PRK11197 lldD L-lactate dehydrogenase; Provisional

Probab=95.89  E-value=0.019  Score=46.10  Aligned_cols=43  Identities=35%  Similarity=0.408  Sum_probs=36.1

Q ss_pred             HHHHHHHHc--CCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhh
Q 046574           13 SLLLMRKAF--KGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLA   56 (104)
Q Consensus        13 ~~~~ir~~~--~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~la   56 (104)
                      .+..+++.+  +.|||+.||| +..++-++|.-| +|+|++||+|+.
T Consensus       289 ~L~~i~~a~~~~~~vi~dGGIr~g~Di~KALaLG-A~~V~iGr~~l~  334 (381)
T PRK11197        289 ALPAIADAVKGDITILADSGIRNGLDVVRMIALG-ADTVLLGRAFVY  334 (381)
T ss_pred             HHHHHHHHhcCCCeEEeeCCcCcHHHHHHHHHcC-cCceeEhHHHHH
Confidence            444566655  3699999999 999999999999 799999999984

>PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase

Probab=95.88  E-value=0.022  Score=45.44  Aligned_cols=42  Identities=31%  Similarity=0.297  Sum_probs=35.5

Q ss_pred             HHHHHHHHcC--CeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHh
Q 046574           13 SLLLMRKAFK--GTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFL   55 (104)
Q Consensus        13 ~~~~ir~~~~--~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~l   55 (104)
                      .+..+++.+.  .|||+.||| +..++-++|.-| +|+|++||++|
T Consensus       268 ~L~ei~~av~~~~~vi~dGGIr~G~Dv~KALALG-A~aV~iGr~~l  312 (367)
T PLN02493        268 ALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFIGRPVV  312 (367)
T ss_pred             HHHHHHHHhCCCCeEEEeCCcCcHHHHHHHHHcC-CCEEEEcHHHH
Confidence            3444666654  699999999 999999999999 79999999999

>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea

Probab=95.78  E-value=0.044  Score=40.12  Aligned_cols=53  Identities=23%  Similarity=0.253  Sum_probs=40.6

Q ss_pred             hHHHHHHHHcCCeEEEeCCC---CH----HHHHHHHHcCCCcEEecchHHhhCCcHHHHHh
Q 046574           12 HSLLLMRKAFKGTFLVAGGY---DR----EDGNKAIAEGRADLVVYGRFFLANPDLPRRFE   65 (104)
Q Consensus        12 ~~~~~ir~~~~~pvi~~Ggi---~~----~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~   65 (104)
                      +..+.+.+....||++.||+   |+    +.+.++++.| ++.|++||.++..||-...++
T Consensus       169 ~~~~~i~~~~~~pvv~~GG~~~~~~~~~l~~~~~~~~~G-a~gv~vg~~i~~~~dp~~~~~  228 (235)
T cd00958         169 ESFKEVVEGCPVPVVIAGGPKKDSEEEFLKMVYDAMEAG-AAGVAVGRNIFQRPDPVAMLR  228 (235)
T ss_pred             HHHHHHHhcCCCCEEEeCCCCCCCHHHHHHHHHHHHHcC-CcEEEechhhhcCCCHHHHHH
Confidence            34556666667899998997   44    4488889888 799999999999998655443

Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.

>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase

Probab=95.77  E-value=0.043  Score=41.12  Aligned_cols=52  Identities=25%  Similarity=0.198  Sum_probs=39.9

Q ss_pred             hHHHHHHHHcCCeEEEeCCCC-------HHHHHHHHHcCCCcEEecchHHhhCCcHHHHH
Q 046574           12 HSLLLMRKAFKGTFLVAGGYD-------REDGNKAIAEGRADLVVYGRFFLANPDLPRRF   64 (104)
Q Consensus        12 ~~~~~ir~~~~~pvi~~Ggi~-------~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri   64 (104)
                      +.++.+.+...+||.+.|||+       .+.+.++++.| ++.|++||.++..+|-...+
T Consensus       182 ~~l~~~~~~~~iPVva~GGi~~~~~~~~~~~i~~~~~aG-a~Gia~g~~i~~~~dp~~~~  240 (258)
T TIGR01949       182 DSFRDVVKGCPAPVVVAGGPKTNSDREFLQMIKDAMEAG-AAGVAVGRNIFQHDDPVGIT  240 (258)
T ss_pred             HHHHHHHHhCCCcEEEecCCCCCCHHHHHHHHHHHHHcC-CcEEehhhHhhcCCCHHHHH
Confidence            344455555568999999995       66677777888 68999999999999954443

Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.

>PLN02617 imidazole glycerol phosphate synthase hisHF

Probab=95.71  E-value=0.03  Score=46.66  Aligned_cols=53  Identities=19%  Similarity=0.127  Sum_probs=44.7

Q ss_pred             HHHHHHHHcCCeEEEeCCC-CH-----------HHHHHHHHcCCCcEEecchHHhhCC------------cHHHHHhh
Q 046574           13 SLLLMRKAFKGTFLVAGGY-DR-----------EDGNKAIAEGRADLVVYGRFFLANP------------DLPRRFEF   66 (104)
Q Consensus        13 ~~~~ir~~~~~pvi~~Ggi-~~-----------~~ae~~l~~g~~DlVa~gR~~lanP------------dl~~ri~~   66 (104)
                      ..+.+.+.+.+||-+.||| +.           ++|++++..| +|-|+++...+.||            +|+..+..
T Consensus       305 ~i~~i~~~~~ip~~vGGGIr~~~d~~~~~~~~~e~~~~~l~~G-adkV~i~s~Av~~~~~~~~~~~~~~p~~i~~~~~  381 (538)
T PLN02617        305 VLRRASENVFVPLTVGGGIRDFTDANGRYYSSLEVASEYFRSG-ADKISIGSDAVYAAEEYIASGVKTGKTSIEQISR  381 (538)
T ss_pred             HHHHHHhhCCCCEEEcCCccccccccccccchHHHHHHHHHcC-CCEEEEChHHHhChhhhhccccccCHHHHHHHHH
Confidence            4455666667899999999 75           7799999999 89999999999975            99988876

>PLN02898 HMP-P kinase/thiamin-monophosphate pyrophosphorylase

Probab=95.68  E-value=0.041  Score=44.98  Aligned_cols=53  Identities=17%  Similarity=0.171  Sum_probs=43.1

Q ss_pred             hHHHHHHHHcCCeEEEeCCCCHHHHHHHHHcCCCc---EEecchHHhhCCcHHHHHh
Q 046574           12 HSLLLMRKAFKGTFLVAGGYDREDGNKAIAEGRAD---LVVYGRFFLANPDLPRRFE   65 (104)
Q Consensus        12 ~~~~~ir~~~~~pvi~~Ggi~~~~ae~~l~~g~~D---lVa~gR~~lanPdl~~ri~   65 (104)
                      +.++.+.+..+.||++.|||+++.+.++++.| +|   .|++++.++..+|....++
T Consensus       434 ~~~~~~~~~~~~Pv~aiGGI~~~~~~~~~~~G-~~~~~gvav~~~i~~~~d~~~~~~  489 (502)
T PLN02898        434 DGLREVCEASKLPVVAIGGISASNAASVMESG-APNLKGVAVVSALFDQEDVLKATR  489 (502)
T ss_pred             HHHHHHHHcCCCCEEEECCCCHHHHHHHHHcC-CCcCceEEEEeHHhcCCCHHHHHH
Confidence            34455556667899999999999999999987 56   9999999998888665554

>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein

Probab=95.67  E-value=0.024  Score=45.25  Aligned_cols=36  Identities=36%  Similarity=0.395  Sum_probs=32.9

Q ss_pred             CeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCc
Q 046574           23 GTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPD   59 (104)
Q Consensus        23 ~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPd   59 (104)
                      +|||+.||| +..++.++|.-| +|.|.+|++|+.--+
T Consensus       256 vpVIAdGGI~tg~di~kAlAlG-AdaV~iGt~~a~a~E  292 (369)
T TIGR01304       256 VHVIADGGIETSGDLVKAIACG-ADAVVLGSPLARAAE  292 (369)
T ss_pred             ceEEEeCCCCCHHHHHHHHHcC-CCEeeeHHHHHhhhc
Confidence            699999999 999999999998 799999999997544

This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.

>PLN02591 tryptophan synthase

Probab=95.62  E-value=0.044  Score=41.51  Aligned_cols=45  Identities=20%  Similarity=0.203  Sum_probs=38.9

Q ss_pred             chHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhh
Q 046574           11 PHSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLA   56 (104)
Q Consensus        11 ~~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~la   56 (104)
                      .+..+.+|+..+.||++.-|| ++++++++++.| +|.|.+|..++.
T Consensus       178 ~~~i~~vk~~~~~Pv~vGFGI~~~e~v~~~~~~G-ADGvIVGSalVk  223 (250)
T PLN02591        178 ESLLQELKEVTDKPVAVGFGISKPEHAKQIAGWG-ADGVIVGSAMVK  223 (250)
T ss_pred             HHHHHHHHhcCCCceEEeCCCCCHHHHHHHHhcC-CCEEEECHHHHH
Confidence            356778999888899999999 799999998877 799999999873

>CHL00200 trpA tryptophan synthase alpha subunit; Provisional

Probab=95.57  E-value=0.032  Score=42.49  Aligned_cols=44  Identities=11%  Similarity=0.096  Sum_probs=38.4

Q ss_pred             chHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHh
Q 046574           11 PHSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFL   55 (104)
Q Consensus        11 ~~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~l   55 (104)
                      .+..+.+|+..+.|+.+-+|| ++++++++.+.| +|.|.+|..++
T Consensus       191 ~~~i~~ir~~t~~Pi~vGFGI~~~e~~~~~~~~G-ADGvVVGSalv  235 (263)
T CHL00200        191 KKLIETIKKMTNKPIILGFGISTSEQIKQIKGWN-INGIVIGSACV  235 (263)
T ss_pred             HHHHHHHHHhcCCCEEEECCcCCHHHHHHHHhcC-CCEEEECHHHH
Confidence            356677888888899999999 799999998877 79999999985

>TIGR00734 hisAF_rel hisA/hisF family protein

Probab=95.49  E-value=0.033  Score=41.13  Aligned_cols=42  Identities=24%  Similarity=0.075  Sum_probs=37.5

Q ss_pred             CeEEEeCCC-CHHHHHHHHH--cCCCcEEecchHHhhCCcHHHHHh
Q 046574           23 GTFLVAGGY-DREDGNKAIA--EGRADLVVYGRFFLANPDLPRRFE   65 (104)
Q Consensus        23 ~pvi~~Ggi-~~~~ae~~l~--~g~~DlVa~gR~~lanPdl~~ri~   65 (104)
                      .||.+.||| |.+++++++.  ++ +|-|.+|...+.||+|..++.
T Consensus        78 ~~v~vgGGirs~e~~~~~~~~l~~-a~rvvigT~a~~~p~~l~~~~  122 (221)
T TIGR00734        78 VELIADCGVRSPEDLETLPFTLEF-ASRVVVATETLDITELLRECY  122 (221)
T ss_pred             CcEEEcCccCCHHHHHHHHhhhcc-ceEEeecChhhCCHHHHHHhh
Confidence            489999999 9999999865  46 999999999999999998875

This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown.

>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]

Probab=95.46  E-value=0.038  Score=41.81  Aligned_cols=55  Identities=22%  Similarity=0.399  Sum_probs=43.4

Q ss_pred             chHHHHHHHHcCC-eEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHhh
Q 046574           11 PHSLLLMRKAFKG-TFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEF   66 (104)
Q Consensus        11 ~~~~~~ir~~~~~-pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~~   66 (104)
                      +...+.+++..+. +||..||| ++|+|.++..+| +|.|..|--.=.+||-..++..
T Consensus       179 Pv~~e~v~~v~~~~~LivGGGIrs~E~A~~~a~ag-AD~IVtG~iiee~~~~~~~~v~  235 (240)
T COG1646         179 PVPVEMVSRVLSDTPLIVGGGIRSPEQAREMAEAG-ADTIVTGTIIEEDPDKALETVE  235 (240)
T ss_pred             CcCHHHHHHhhccceEEEcCCcCCHHHHHHHHHcC-CCEEEECceeecCHHHHHHHHH
Confidence            3445566776654 99999999 999999999888 7999999888888866555443

>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP)

Probab=95.42  E-value=0.025  Score=40.75  Aligned_cols=45  Identities=22%  Similarity=0.233  Sum_probs=37.6

Q ss_pred             HHHHH-cCCeEEEeCCCCHHHHHHHHHcCCCcEEecchHHhhCCcH
Q 046574           16 LMRKA-FKGTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANPDL   60 (104)
Q Consensus        16 ~ir~~-~~~pvi~~Ggi~~~~ae~~l~~g~~DlVa~gR~~lanPdl   60 (104)
                      .+++. .+.|+++.|||+++.+.++++.+..+.|.+...+...|-.
T Consensus       145 ~l~~~~~~~PvilaGGI~~~Nv~~~i~~~~~~gvdv~S~ie~~pg~  190 (203)
T cd00405         145 LLRGLASRKPVILAGGLTPDNVAEAIRLVRPYGVDVSSGVETSPGI  190 (203)
T ss_pred             HhhccccCCCEEEECCCChHHHHHHHHhcCCCEEEcCCcccCCCCC
Confidence            45444 3679999999999999999999888999999998877653

Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.

>PRK06843 inosine 5-monophosphate dehydrogenase; Validated

Probab=95.41  E-value=0.022  Score=46.01  Aligned_cols=44  Identities=34%  Similarity=0.438  Sum_probs=37.8

Q ss_pred             HHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHHHH
Q 046574           19 KAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLPRR   63 (104)
Q Consensus        19 ~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~r   63 (104)
                      +.++.|||+-||| ++.++.++|.-| +|.|.+|+.|....+-|-.
T Consensus       253 ~~~~vpVIAdGGI~~~~Di~KALalG-A~aVmvGs~~agt~Espg~  297 (404)
T PRK06843        253 KNTNICIIADGGIRFSGDVVKAIAAG-ADSVMIGNLFAGTKESPSE  297 (404)
T ss_pred             hhcCCeEEEeCCCCCHHHHHHHHHcC-CCEEEEcceeeeeecCCCc
Confidence            3457899999999 999999999999 7999999999987665544

>PRK09517 multifunctional thiamine-phosphate pyrophosphorylase/synthase/phosphomethylpyrimidine kinase; Provisional

Probab=95.20  E-value=0.074  Score=45.79  Aligned_cols=52  Identities=12%  Similarity=0.086  Sum_probs=44.0

Q ss_pred             hHHHHHHHHcC---CeEEEeCCCCHHHHHHHHHcCCCcEEecchHHhhCCcHHHHH
Q 046574           12 HSLLLMRKAFK---GTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANPDLPRRF   64 (104)
Q Consensus        12 ~~~~~ir~~~~---~pvi~~Ggi~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri   64 (104)
                      +.++.+++...   +||++-|||+++.+.++++.| +|.|++.+.++..+|....+
T Consensus       153 ~~l~~~~~~~~~~~iPv~AiGGI~~~~~~~~~~~G-a~giAvisai~~a~d~~~a~  207 (755)
T PRK09517        153 DGIAEIAAVAQDHGIASVAIGGVGLRNAAELAATG-IDGLCVVSAIMAAANPAAAA  207 (755)
T ss_pred             HHHHHHHHhcCcCCCCEEEECCCCHHHHHHHHHcC-CCEEEEehHhhCCCCHHHHH
Confidence            35566777777   899999999999999999998 89999999999888855433

>PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional

Probab=95.18  E-value=0.081  Score=42.60  Aligned_cols=52  Identities=35%  Similarity=0.424  Sum_probs=40.7

Q ss_pred             HHHHHHHHc-CCeEEEeCCCCHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHh
Q 046574           13 SLLLMRKAF-KGTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANPDLPRRFE   65 (104)
Q Consensus        13 ~~~~ir~~~-~~pvi~~Ggi~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~   65 (104)
                      ..+.+|+.. +.++.+.|||+++.+.++++.| +|.+.+||++...+|....++
T Consensus       320 kI~~ikk~~~~~~I~VdGGI~~eti~~l~~aG-ADivVVGsaIf~a~Dp~~aak  372 (391)
T PRK13307        320 NIKEIKKAGGKILVAVAGGVRVENVEEALKAG-ADILVVGRAITKSKDVRRAAE  372 (391)
T ss_pred             HHHHHHHhCCCCcEEEECCcCHHHHHHHHHcC-CCEEEEeHHHhCCCCHHHHHH
Confidence            344566653 3589999999999999999988 799999999888788644433

>CHL00162 thiG thiamin biosynthesis protein G; Validated

Probab=95.12  E-value=0.059  Score=41.36  Aligned_cols=50  Identities=14%  Similarity=0.187  Sum_probs=44.1

Q ss_pred             hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHHH
Q 046574           12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLPR   62 (104)
Q Consensus        12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~   62 (104)
                      ..++.|++..++|||+.+|| +++++..+++-| +|.|.+..+...-+|.+.
T Consensus       179 ~~l~~i~e~~~vpVivdAGIgt~sDa~~AmElG-aDgVL~nSaIakA~dP~~  229 (267)
T CHL00162        179 LNLQIIIENAKIPVIIDAGIGTPSEASQAMELG-ASGVLLNTAVAQAKNPEQ  229 (267)
T ss_pred             HHHHHHHHcCCCcEEEeCCcCCHHHHHHHHHcC-CCEEeecceeecCCCHHH
Confidence            57788999888999999999 999999999999 899999888887777644

>PRK12290 thiE thiamine-phosphate pyrophosphorylase; Reviewed

Probab=95.06  E-value=0.12  Score=42.23  Aligned_cols=43  Identities=16%  Similarity=0.135  Sum_probs=38.2

Q ss_pred             CCeEEEeCCCCHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHh
Q 046574           22 KGTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANPDLPRRFE   65 (104)
Q Consensus        22 ~~pvi~~Ggi~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~   65 (104)
                      +.||++-|||+++.+.++++.| ++.|++-|.+...+|....++
T Consensus       364 ~iPVVAIGGI~~~Ni~~vl~aG-a~GVAVVSAI~~A~DP~aa~~  406 (437)
T PRK12290        364 GFPTVAIGGIDQSNAEQVWQCG-VSSLAVVRAITLAEDPQLVIE  406 (437)
T ss_pred             CCCEEEECCcCHHHHHHHHHcC-CCEEEEehHhhcCCCHHHHHH
Confidence            5799999999999999999999 899999999998888665544

>PLN02274 inosine-5'-monophosphate dehydrogenase

Probab=95.06  E-value=0.052  Score=44.89  Aligned_cols=56  Identities=18%  Similarity=0.312  Sum_probs=43.3

Q ss_pred             HHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHHHHH--hhCCCC
Q 046574           14 LLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLPRRF--EFNAPL   70 (104)
Q Consensus        14 ~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri--~~g~~l   70 (104)
                      ...+.+.+++|||+.||| ++.++.++|..| +|.|.+|..|..--+-|-..  ++|+.+
T Consensus       343 ~~~~~~~~~vpVIadGGI~~~~di~kAla~G-A~~V~vGs~~~~t~Esp~~~~~~~g~~~  401 (505)
T PLN02274        343 VASIAAQHGVPVIADGGISNSGHIVKALTLG-ASTVMMGSFLAGTTEAPGEYFYQDGVRV  401 (505)
T ss_pred             HHHHHHhcCCeEEEeCCCCCHHHHHHHHHcC-CCEEEEchhhcccccCCcceeeeCCeEE
Confidence            344555667899999999 999999999999 79999999998876555332  345544

>PRK13111 trpA tryptophan synthase subunit alpha; Provisional

Probab=94.93  E-value=0.069  Score=40.56  Aligned_cols=43  Identities=19%  Similarity=0.124  Sum_probs=37.8

Q ss_pred             chHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHh
Q 046574           11 PHSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFL   55 (104)
Q Consensus        11 ~~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~l   55 (104)
                      .+..+.+|+..+.||++.+|| +++++.++++ . +|.|.+|..++
T Consensus       189 ~~~i~~vk~~~~~pv~vGfGI~~~e~v~~~~~-~-ADGviVGSaiv  232 (258)
T PRK13111        189 AELVARLKAHTDLPVAVGFGISTPEQAAAIAA-V-ADGVIVGSALV  232 (258)
T ss_pred             HHHHHHHHhcCCCcEEEEcccCCHHHHHHHHH-h-CCEEEEcHHHH
Confidence            357788999888999999999 9999999885 4 89999999987

>TIGR01182 eda Entner-Doudoroff aldolase

Probab=94.90  E-value=0.065  Score=39.54  Aligned_cols=45  Identities=16%  Similarity=0.170  Sum_probs=38.5

Q ss_pred             chHHHHHHHHcC-CeEEEeCCCCHHHHHHHHHcCCCcEEecchHHhh
Q 046574           11 PHSLLLMRKAFK-GTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLA   56 (104)
Q Consensus        11 ~~~~~~ir~~~~-~pvi~~Ggi~~~~ae~~l~~g~~DlVa~gR~~la   56 (104)
                      +...+.++.-+. .++|.+||++++.+.+.++.| +..+++|..+..
T Consensus       136 ~~yikal~~plp~i~~~ptGGV~~~N~~~~l~aG-a~~vg~Gs~L~~  181 (204)
T TIGR01182       136 VKMLKALAGPFPQVRFCPTGGINLANVRDYLAAP-NVACGGGSWLVP  181 (204)
T ss_pred             HHHHHHHhccCCCCcEEecCCCCHHHHHHHHhCC-CEEEEEChhhcC
Confidence            456677777775 599999999999999999999 799999988874

2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida

>PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2

Probab=94.85  E-value=0.047  Score=38.69  Aligned_cols=41  Identities=22%  Similarity=0.102  Sum_probs=31.8

Q ss_pred             hHHHHHHHHcCCeEEEeCCCCHHHHHHHHHcCCCcEEecchH
Q 046574           12 HSLLLMRKAFKGTFLVAGGYDREDGNKAIAEGRADLVVYGRF   53 (104)
Q Consensus        12 ~~~~~ir~~~~~pvi~~Ggi~~~~ae~~l~~g~~DlVa~gR~   53 (104)
                      ..+..+++....||++-|||+++.+.++.+.| +|.|++-+.
T Consensus       139 ~~l~~~~~~~~~pv~AlGGI~~~~i~~l~~~G-a~gvAvi~a  179 (180)
T PF02581_consen  139 DGLREIARASPIPVYALGGITPENIPELREAG-ADGVAVISA  179 (180)
T ss_dssp             HHHHHHHHHTSSCEEEESS--TTTHHHHHHTT--SEEEESHH
T ss_pred             HHHHHHHHhCCCCEEEEcCCCHHHHHHHHHcC-CCEEEEEee
Confidence            34556777778999999999999999999988 799988765

5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D ....

>PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional

Probab=94.83  E-value=0.079  Score=39.79  Aligned_cols=46  Identities=22%  Similarity=0.195  Sum_probs=37.5

Q ss_pred             hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHc-----CCCcEEecchHHhhC
Q 046574           12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAE-----GRADLVVYGRFFLAN   57 (104)
Q Consensus        12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~-----g~~DlVa~gR~~lan   57 (104)
                      +..+.+++..+.|||++||+ +.++..++..-     |.++-+.+|+.+-..
T Consensus       178 el~~~l~~~~~~pviasGGv~s~~Dl~~l~~~~~~~~g~v~gvivg~Al~~g  229 (241)
T PRK14114        178 SLTRKIAIEAEVKVFAAGGISSENSLKTAQRVHRETNGLLKGVIVGRAFLEG  229 (241)
T ss_pred             HHHHHHHHHCCCCEEEECCCCCHHHHHHHHhcccccCCcEEEEEEehHHHCC
Confidence            35667777788899999999 99999888774     458999999987543

>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional

Probab=94.80  E-value=0.05  Score=44.82  Aligned_cols=46  Identities=26%  Similarity=0.376  Sum_probs=37.9

Q ss_pred             HHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHHHH
Q 046574           17 MRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLPRR   63 (104)
Q Consensus        17 ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~r   63 (104)
                      +.+..++|||+.||| ++.++.+++..| +|+|.+|+.|...-+.|.+
T Consensus       339 ~~~~~~v~vIadGGi~~~~di~kAla~G-A~~Vm~G~~~a~~~e~~~~  385 (495)
T PTZ00314        339 YARERGVPCIADGGIKNSGDICKALALG-ADCVMLGSLLAGTEEAPGE  385 (495)
T ss_pred             HHhhcCCeEEecCCCCCHHHHHHHHHcC-CCEEEECchhccccccCCc
Confidence            334457899999999 999999999999 7999999998876655543

>TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase

Probab=94.79  E-value=0.073  Score=39.94  Aligned_cols=46  Identities=17%  Similarity=0.247  Sum_probs=36.0

Q ss_pred             hHHHHHHHHcCCeEEEeCCC-CHHHHHHH--HHcCCCcEEecchHHhhC
Q 046574           12 HSLLLMRKAFKGTFLVAGGY-DREDGNKA--IAEGRADLVVYGRFFLAN   57 (104)
Q Consensus        12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~--l~~g~~DlVa~gR~~lan   57 (104)
                      +..+.+++..+.|||++||+ +.++.+++  +....+|.|.+|+.|-..
T Consensus       183 ~l~~~l~~~~~~pviasGGv~s~eDl~~l~~l~~~Gv~gvivg~Al~~g  231 (243)
T TIGR01919       183 LLLEVVAARTDAIVAASGGSSLLDDLRAIKYLDEGGVSVAIGGKLLYAR  231 (243)
T ss_pred             HHHHHHHhhCCCCEEEECCcCCHHHHHHHHhhccCCeeEEEEhHHHHcC
Confidence            35577888888899999999 89988876  333348999999987543

This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent.

>PRK08999 hypothetical protein; Provisional

Probab=94.65  E-value=0.055  Score=41.19  Aligned_cols=42  Identities=17%  Similarity=0.091  Sum_probs=34.7

Q ss_pred             hHHHHHHHHcCCeEEEeCCCCHHHHHHHHHcCCCcEEecchHH
Q 046574           12 HSLLLMRKAFKGTFLVAGGYDREDGNKAIAEGRADLVVYGRFF   54 (104)
Q Consensus        12 ~~~~~ir~~~~~pvi~~Ggi~~~~ae~~l~~g~~DlVa~gR~~   54 (104)
                      ..++.+++..+.||++-|||+++.+.++++.| +|.|++-+.+
T Consensus       270 ~~~~~~~~~~~~Pv~AiGGI~~~~~~~~~~~g-~~gva~i~~~  311 (312)
T PRK08999        270 EGFAALIAGVPLPVYALGGLGPGDLEEAREHG-AQGIAGIRGL  311 (312)
T ss_pred             HHHHHHHHhCCCCEEEECCCCHHHHHHHHHhC-CCEEEEEEEe
Confidence            34556777778899999999999999999998 7888876543

>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes

Probab=94.60  E-value=0.11  Score=39.51  Aligned_cols=36  Identities=19%  Similarity=0.303  Sum_probs=31.0

Q ss_pred             CCeEEEeCCCCHHHHHHHHHcCCCcEEecchHHhhCC
Q 046574           22 KGTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANP   58 (104)
Q Consensus        22 ~~pvi~~Ggi~~~~ae~~l~~g~~DlVa~gR~~lanP   58 (104)
                      +.|+.+.|||+++.+.++.+.| +|.|++|...-+-|
T Consensus       227 ~i~i~asGGIt~~ni~~~a~~G-ad~Isvgal~~s~~  262 (269)
T cd01568         227 RVLLEASGGITLENIRAYAETG-VDVISTGALTHSAP  262 (269)
T ss_pred             CeEEEEECCCCHHHHHHHHHcC-CCEEEEcHHHcCCC
Confidence            5699999999999999999999 89999986665543

It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.

>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional

Probab=94.56  E-value=0.094  Score=38.79  Aligned_cols=49  Identities=16%  Similarity=0.207  Sum_probs=38.1

Q ss_pred             chHHHHHHHHcC-CeEEEeCCCCHHHHHHHHHcCCCcEEecchHHhhCCcHH
Q 046574           11 PHSLLLMRKAFK-GTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANPDLP   61 (104)
Q Consensus        11 ~~~~~~ir~~~~-~pvi~~Ggi~~~~ae~~l~~g~~DlVa~gR~~lanPdl~   61 (104)
                      +...+.++..++ .++|.+||++++.+.+.++.|  +.++.|...|.+.++.
T Consensus       143 ~~~lk~l~~p~p~~~~~ptGGV~~~ni~~~l~ag--~v~~vggs~L~~~~~~  192 (212)
T PRK05718        143 VKMLKALAGPFPDVRFCPTGGISPANYRDYLALP--NVLCIGGSWMVPKDAI  192 (212)
T ss_pred             HHHHHHHhccCCCCeEEEeCCCCHHHHHHHHhCC--CEEEEEChHhCCcchh
Confidence            456667777775 599999999999999999999  5666667777766653

>PRK13125 trpA tryptophan synthase subunit alpha; Provisional

Probab=94.55  E-value=0.12  Score=38.43  Aligned_cols=44  Identities=30%  Similarity=0.421  Sum_probs=37.3

Q ss_pred             hHHHHHHHHcC-CeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhh
Q 046574           12 HSLLLMRKAFK-GTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLA   56 (104)
Q Consensus        12 ~~~~~ir~~~~-~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~la   56 (104)
                      +..+.+|+..+ .|+++-||| +++++.++++.| +|.+.+|..++.
T Consensus       174 ~~i~~lr~~~~~~~i~v~gGI~~~e~i~~~~~~g-aD~vvvGSai~~  219 (244)
T PRK13125        174 RNIKRVRNLVGNKYLVVGFGLDSPEDARDALSAG-ADGVVVGTAFIE  219 (244)
T ss_pred             HHHHHHHHhcCCCCEEEeCCcCCHHHHHHHHHcC-CCEEEECHHHHH
Confidence            35567888774 689999999 999999999888 899999999875

>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]

Probab=94.38  E-value=0.054  Score=41.21  Aligned_cols=43  Identities=26%  Similarity=0.337  Sum_probs=37.4

Q ss_pred             hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHH
Q 046574           12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFF   54 (104)
Q Consensus        12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~   54 (104)
                      ..++.+++.+++|||++||- +++...++..+|.+|.+..|.-|
T Consensus       189 ~l~~~v~~~v~iPvIASGGaG~~ehf~eaf~~~~adAaLAAsiF  232 (256)
T COG0107         189 ELTRAVREAVNIPVIASGGAGKPEHFVEAFTEGKADAALAASIF  232 (256)
T ss_pred             HHHHHHHHhCCCCEEecCCCCcHHHHHHHHHhcCccHHHhhhhh
Confidence            46678999999999999999 99999999999999987766554

>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional

Probab=94.31  E-value=0.13  Score=39.64  Aligned_cols=44  Identities=11%  Similarity=0.154  Sum_probs=34.3

Q ss_pred             HHHHHHHHc--CCeEEEeCCCCHHHHHHHHHcCCCcEEecchHHhhC
Q 046574           13 SLLLMRKAF--KGTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLAN   57 (104)
Q Consensus        13 ~~~~ir~~~--~~pvi~~Ggi~~~~ae~~l~~g~~DlVa~gR~~lan   57 (104)
                      ..+.+.+..  +.|+.+.|||+++.+.++...| +|.|++|...-+=
T Consensus       222 ~l~~~v~~~~~~i~leAsGGIt~~ni~~~a~tG-vD~Isvg~lt~s~  267 (277)
T PRK05742        222 DMREAVRLTAGRAKLEASGGINESTLRVIAETG-VDYISIGAMTKDV  267 (277)
T ss_pred             HHHHHHHHhCCCCcEEEECCCCHHHHHHHHHcC-CCEEEEChhhcCC
Confidence            334444444  5699999999999999999988 8999999765443

>PRK08649 inosine 5-monophosphate dehydrogenase; Validated

Probab=94.28  E-value=0.05  Score=43.35  Aligned_cols=41  Identities=34%  Similarity=0.412  Sum_probs=36.4

Q ss_pred             CCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHHHH
Q 046574           22 KGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLPRR   63 (104)
Q Consensus        22 ~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~r   63 (104)
                      ++|||+.||| +..++-++|.-| +|.|.+|+.|+...+-+-+
T Consensus       256 ~vpVIAdGGI~~~~diakAlalG-Ad~Vm~Gs~fa~t~Espg~  297 (368)
T PRK08649        256 YVHVIADGGIGTSGDIAKAIACG-ADAVMLGSPLARAAEAPGR  297 (368)
T ss_pred             CCeEEEeCCCCCHHHHHHHHHcC-CCeecccchhcccccCCCc
Confidence            4799999999 999999999998 7999999999987776544

>PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase

Probab=94.23  E-value=0.12  Score=39.66  Aligned_cols=43  Identities=19%  Similarity=0.149  Sum_probs=35.4

Q ss_pred             hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcC-CCcEEecchHH
Q 046574           12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEG-RADLVVYGRFF   54 (104)
Q Consensus        12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g-~~DlVa~gR~~   54 (104)
                      +..+.+++..+.|||++||+ +.++..++...| .+.-|.+||++
T Consensus       197 el~~~l~~~~~ipVIASGGv~sleDi~~L~~~g~g~~gvIvGkAl  241 (262)
T PLN02446        197 ELVALLGEHSPIPVTYAGGVRSLDDLERVKVAGGGRVDVTVGSAL  241 (262)
T ss_pred             HHHHHHHhhCCCCEEEECCCCCHHHHHHHHHcCCCCEEEEEEeeH
Confidence            35567888888999999999 999999888765 34668899997

>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic

Probab=94.21  E-value=0.11  Score=41.33  Aligned_cols=39  Identities=33%  Similarity=0.436  Sum_probs=33.4

Q ss_pred             hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecc
Q 046574           12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYG   51 (104)
Q Consensus        12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~g   51 (104)
                      +..+.||+.|..+.+..|++ |++.|+.+++.| +|.|-+|
T Consensus       139 ~~ik~ir~~~p~~~viaGNV~T~e~a~~Li~aG-AD~ikVg  178 (343)
T TIGR01305       139 EFVKLVREAFPEHTIMAGNVVTGEMVEELILSG-ADIVKVG  178 (343)
T ss_pred             HHHHHHHhhCCCCeEEEecccCHHHHHHHHHcC-CCEEEEc
Confidence            46778999999888999999 999999999999 7876543

A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.

>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase

Probab=94.17  E-value=0.1  Score=42.40  Aligned_cols=49  Identities=27%  Similarity=0.354  Sum_probs=40.8

Q ss_pred             cCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHh--hCCCC
Q 046574           21 FKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLPRRFE--FNAPL   70 (104)
Q Consensus        21 ~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~--~g~~l   70 (104)
                      .+.|||+.||| ++.++.++|..| +|.|.+|+.|....+-|-...  +|+.+
T Consensus       326 ~~vpviadGGi~~~~di~kAla~G-A~~V~~G~~~a~~~e~pg~~~~~~g~~~  377 (450)
T TIGR01302       326 SGIPVIADGGIRYSGDIVKALAAG-ADAVMLGSLLAGTTESPGEYEIINGRRY  377 (450)
T ss_pred             cCCeEEEeCCCCCHHHHHHHHHcC-CCEEEECchhhcCCcCCCceEEECCEEE
Confidence            57899999999 999999999999 899999999988887775543  35443

This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.

>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4

Probab=94.05  E-value=0.12  Score=39.27  Aligned_cols=52  Identities=19%  Similarity=0.255  Sum_probs=40.9

Q ss_pred             HHHHHHHcC--CeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHhh
Q 046574           14 LLLMRKAFK--GTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEF   66 (104)
Q Consensus        14 ~~~ir~~~~--~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~~   66 (104)
                      ...+...+.  ..+|+-+|| +++++..+...| +|.|.+|..++.+||....+++
T Consensus       199 ~~~l~~~ip~~~~~iseSGI~~~~d~~~l~~~G-~davLVGe~lm~~~d~~~~~~~  253 (254)
T PF00218_consen  199 TEELAPLIPKDVIVISESGIKTPEDARRLARAG-ADAVLVGEALMRSPDPGEALRE  253 (254)
T ss_dssp             HHHHHCHSHTTSEEEEESS-SSHHHHHHHCTTT--SEEEESHHHHTSSSHHHHHHH
T ss_pred             HHHHHhhCccceeEEeecCCCCHHHHHHHHHCC-CCEEEECHHHhCCCCHHHHHhc
Confidence            334555553  578888999 999999998877 7999999999999999887753

1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....

>PRK06806 fructose-bisphosphate aldolase; Provisional

Probab=93.93  E-value=0.26  Score=37.89  Aligned_cols=46  Identities=17%  Similarity=0.205  Sum_probs=40.9

Q ss_pred             hHHHHHHHHcCCeEEEeC--CCCHHHHHHHHHcCCCcEEecchHHhhCC
Q 046574           12 HSLLLMRKAFKGTFLVAG--GYDREDGNKAIAEGRADLVVYGRFFLANP   58 (104)
Q Consensus        12 ~~~~~ir~~~~~pvi~~G--gi~~~~ae~~l~~g~~DlVa~gR~~lanP   58 (104)
                      +.++.|++.+++||++-|  ||+.++..++++.| ++-|.+...+..+|
T Consensus       190 ~~L~~i~~~~~iPlV~hG~SGI~~e~~~~~i~~G-~~kinv~T~i~~a~  237 (281)
T PRK06806        190 DRLQEINDVVHIPLVLHGGSGISPEDFKKCIQHG-IRKINVATATFNSV  237 (281)
T ss_pred             HHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHcC-CcEEEEhHHHHHHH
Confidence            567788888899999999  99999999999999 89999999998843

>PRK08005 epimerase; Validated

Probab=93.88  E-value=0.32  Score=35.97  Aligned_cols=48  Identities=21%  Similarity=0.326  Sum_probs=37.8

Q ss_pred             HHHHcCC-eEEEeCCCCHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHh
Q 046574           17 MRKAFKG-TFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANPDLPRRFE   65 (104)
Q Consensus        17 ir~~~~~-pvi~~Ggi~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~   65 (104)
                      +|+..+. .+-+-||++.+.+.++.+.| +|.+.+|+.+..++|..+.++
T Consensus       157 l~~~~~~~~I~VDGGI~~~~i~~l~~aG-ad~~V~GsaiF~~~d~~~~~~  205 (210)
T PRK08005        157 SREHFPAAECWADGGITLRAARLLAAAG-AQHLVIGRALFTTANYDVTLS  205 (210)
T ss_pred             HHHhcccCCEEEECCCCHHHHHHHHHCC-CCEEEEChHhhCCCCHHHHHH
Confidence            3344332 57777999999999999999 799999999988888655544

>TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type

Probab=93.85  E-value=0.14  Score=39.12  Aligned_cols=43  Identities=16%  Similarity=0.182  Sum_probs=32.6

Q ss_pred             hHHHHHHHHcCCeEEEeCCC-CHHHHHHH--HHcCCCcEEecchHHh
Q 046574           12 HSLLLMRKAFKGTFLVAGGY-DREDGNKA--IAEGRADLVVYGRFFL   55 (104)
Q Consensus        12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~--l~~g~~DlVa~gR~~l   55 (104)
                      +..+.+.+.++.|||++||+ +.++..++  +..|..+ +.+|+.+.
T Consensus       191 el~~~l~~~~~ipVIASGGv~s~eDi~~l~~~~~g~~~-aIvG~Alf  236 (253)
T TIGR02129       191 ELVSKLGEWSPIPITYAGGAKSIDDLDLVDELSKGKVD-LTIGSALD  236 (253)
T ss_pred             HHHHHHHhhCCCCEEEECCCCCHHHHHHHHHhcCCCCc-EEeeehHH
Confidence            35567888888999999999 99999877  4335444 77777764

This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut.

>PRK07226 fructose-bisphosphate aldolase; Provisional

Probab=93.83  E-value=0.28  Score=37.00  Aligned_cols=48  Identities=21%  Similarity=0.206  Sum_probs=34.4

Q ss_pred             HHHHHHcCCeEEEeCCCC---HHHH----HHHHHcCCCcEEecchHHhhCCcHHHH
Q 046574           15 LLMRKAFKGTFLVAGGYD---REDG----NKAIAEGRADLVVYGRFFLANPDLPRR   63 (104)
Q Consensus        15 ~~ir~~~~~pvi~~Ggi~---~~~a----e~~l~~g~~DlVa~gR~~lanPdl~~r   63 (104)
                      +.+.+...+||.+.|||+   .+++    .++++.| ++.+++||.++..||-...
T Consensus       189 ~~~~~~~~ipV~a~GGi~~~~~~~~l~~v~~~~~aG-A~Gis~gr~i~~~~~p~~~  243 (267)
T PRK07226        189 REVVEGCPVPVVIAGGPKTDTDREFLEMVRDAMEAG-AAGVAVGRNVFQHEDPEAI  243 (267)
T ss_pred             HHHHHhCCCCEEEEeCCCCCCHHHHHHHHHHHHHcC-CcEEehhhhhhcCCCHHHH
Confidence            334343457999999995   3444    4455888 6899999999999984433

>TIGR01740 pyrF orotidine 5'-phosphate decarboxylase, subfamily 1

Probab=93.82  E-value=0.13  Score=37.48  Aligned_cols=54  Identities=20%  Similarity=0.238  Sum_probs=40.7

Q ss_pred             chHHHHHHHHcCCeEEEeCCCCHH---HH--------HHHHHcCCCcEEecchHHhhCCcHHHHHh
Q 046574           11 PHSLLLMRKAFKGTFLVAGGYDRE---DG--------NKAIAEGRADLVVYGRFFLANPDLPRRFE   65 (104)
Q Consensus        11 ~~~~~~ir~~~~~pvi~~Ggi~~~---~a--------e~~l~~g~~DlVa~gR~~lanPdl~~ri~   65 (104)
                      ++.+..+|+.++..+++++||.++   ..        +++.+.| +|++.+||++..++|..+.++
T Consensus       146 ~~~~~~ir~~~~~~~~vtPGI~~~g~~~~dq~~~~~~~~~~~~G-ad~iVvGr~I~~~~d~~~~~~  210 (213)
T TIGR01740       146 AEEAKEIRKFTGDFLILTPGIRLQSKGADDQQRVVTLEDAKEAG-ADVIIVGRGIYAAEDPVEAAK  210 (213)
T ss_pred             HHHHHHHHHhcCCceEEeCCcCCCCCCcCCccccCCHHHHHHcC-CCEEEEChhhcCCCCHHHHHH
Confidence            356677888887568999999544   22        6777778 799999999998888655543

This model represents orotidine 5'-monophosphate decarboxylase, the PyrF protein of pyrimidine nucleotide biosynthesis. In many eukaryotes, the region hit by this model is part of a multifunctional protein.

>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences

Probab=93.70  E-value=0.3  Score=37.18  Aligned_cols=47  Identities=21%  Similarity=0.263  Sum_probs=37.6

Q ss_pred             hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCc
Q 046574           12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPD   59 (104)
Q Consensus        12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPd   59 (104)
                      ..++.|++..++|||+-+|| +|.+|.++++-| +|.|.+-.....-.|
T Consensus       165 ~~l~~i~~~~~vPvIvDAGiG~pSdaa~AMElG-~daVLvNTAiA~A~d  212 (247)
T PF05690_consen  165 YNLRIIIERADVPVIVDAGIGTPSDAAQAMELG-ADAVLVNTAIAKAKD  212 (247)
T ss_dssp             HHHHHHHHHGSSSBEEES---SHHHHHHHHHTT--SEEEESHHHHTSSS
T ss_pred             HHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHcC-CceeehhhHHhccCC
Confidence            47788999999999999999 999999999999 899988776655444

ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.

>PRK13813 orotidine 5'-phosphate decarboxylase; Provisional

Probab=93.66  E-value=0.11  Score=37.51  Aligned_cols=50  Identities=22%  Similarity=0.341  Sum_probs=37.2

Q ss_pred             HHHHHHHcCCe-EEEeCCCCHH--HHHHHHHcCCCcEEecchHHhhCCcHHHHH
Q 046574           14 LLLMRKAFKGT-FLVAGGYDRE--DGNKAIAEGRADLVVYGRFFLANPDLPRRF   64 (104)
Q Consensus        14 ~~~ir~~~~~p-vi~~Ggi~~~--~ae~~l~~g~~DlVa~gR~~lanPdl~~ri   64 (104)
                      .+.+++..+.. .|+.||++++  .+.++++.| +|.+.+||++...+|..+.+
T Consensus       153 i~~l~~~~~~~~~ivdgGI~~~g~~~~~~~~aG-ad~iV~Gr~I~~~~d~~~~~  205 (215)
T PRK13813        153 VRYIRSRLGDELKIISPGIGAQGGKAADAIKAG-ADYVIVGRSIYNAADPREAA  205 (215)
T ss_pred             HHHHHHhcCCCcEEEeCCcCCCCCCHHHHHHcC-CCEEEECcccCCCCCHHHHH
Confidence            34666666543 5577999665  388999888 79999999999888854443

>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes

Probab=93.62  E-value=0.16  Score=38.74  Aligned_cols=42  Identities=17%  Similarity=0.162  Sum_probs=33.7

Q ss_pred             HHHHHHHHc--CCeEEEeCCCCHHHHHHHHHcCCCcEEecchHHh
Q 046574           13 SLLLMRKAF--KGTFLVAGGYDREDGNKAIAEGRADLVVYGRFFL   55 (104)
Q Consensus        13 ~~~~ir~~~--~~pvi~~Ggi~~~~ae~~l~~g~~DlVa~gR~~l   55 (104)
                      ..+.+.+..  +.|+.+.|||+++.+.++.+.| +|.|+++...-
T Consensus       215 ~l~~~~~~~~~~ipi~AiGGI~~~ni~~~a~~G-vd~Iav~sl~~  258 (268)
T cd01572         215 ELREAVALLKGRVLLEASGGITLENIRAYAETG-VDYISVGALTH  258 (268)
T ss_pred             HHHHHHHHcCCCCcEEEECCCCHHHHHHHHHcC-CCEEEEEeeec
Confidence            344444544  3699999999999999999998 89999997654

It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.

>PRK13306 ulaD 3-keto-L-gulonate-6-phosphate decarboxylase; Provisional

Probab=93.53  E-value=0.23  Score=36.59  Aligned_cols=50  Identities=20%  Similarity=0.109  Sum_probs=38.5

Q ss_pred             hHHHHHHHHcCC--eEEEeCCCCHHHHHHHHHcCCCcEEecchHHhhCCcHHH
Q 046574           12 HSLLLMRKAFKG--TFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANPDLPR   62 (104)
Q Consensus        12 ~~~~~ir~~~~~--pvi~~Ggi~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~   62 (104)
                      +.+..+|+..+.  .+.++|||+++.+....+.| +|.+.+||+....+|-..
T Consensus       151 ~~~~~ir~~~~~~~~i~V~gGI~~~~~~~~~~~~-ad~~VvGr~I~~a~dp~~  202 (216)
T PRK13306        151 KDLNKVKKLSDMGFKVSVTGGLVVEDLKLFKGIP-VKTFIAGRAIRGAADPAA  202 (216)
T ss_pred             HHHHHHHHHhcCCCeEEEcCCCCHhhHHHHhcCC-CCEEEECCcccCCCCHHH
Confidence            456677777642  37888999998887766666 899999999888888443

>PRK07807 inosine 5-monophosphate dehydrogenase; Validated

Probab=93.50  E-value=0.16  Score=41.82  Aligned_cols=44  Identities=25%  Similarity=0.397  Sum_probs=39.0

Q ss_pred             HcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHHHHH
Q 046574           20 AFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLPRRF   64 (104)
Q Consensus        20 ~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri   64 (104)
                      .+++|||+-||| ++.++.++|..| +|.|.+|..|.-..+-|-..
T Consensus       328 ~~~~~via~ggi~~~~~~~~al~~g-a~~v~~g~~~ag~~Espg~~  372 (479)
T PRK07807        328 ELGAHVWADGGVRHPRDVALALAAG-ASNVMIGSWFAGTYESPGDL  372 (479)
T ss_pred             hcCCcEEecCCCCCHHHHHHHHHcC-CCeeeccHhhccCccCCCce
Confidence            457899999999 999999999998 79999999999888777643

>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein

Probab=93.48  E-value=0.16  Score=41.74  Aligned_cols=42  Identities=29%  Similarity=0.446  Sum_probs=36.1

Q ss_pred             cCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHHHH
Q 046574           21 FKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLPRR   63 (104)
Q Consensus        21 ~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~r   63 (104)
                      ++.|||+.||| ++.++.++|..| +|.|.+|..|.-.-+-|-.
T Consensus       327 ~~~~viadGgi~~~~di~kala~G-A~~vm~g~~~ag~~espg~  369 (475)
T TIGR01303       327 LGGHVWADGGVRHPRDVALALAAG-ASNVMVGSWFAGTYESPGD  369 (475)
T ss_pred             cCCcEEEeCCCCCHHHHHHHHHcC-CCEEeechhhcccccCCCc
Confidence            47899999999 999999999999 7999999999866655544

This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.

>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional

Probab=93.45  E-value=0.24  Score=39.16  Aligned_cols=51  Identities=20%  Similarity=0.208  Sum_probs=43.5

Q ss_pred             chHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHHH
Q 046574           11 PHSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLPR   62 (104)
Q Consensus        11 ~~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~   62 (104)
                      ++..+.+.+..++|||+.+|| +++++.++++-| +|.|.+..+...-+|-+.
T Consensus       238 p~~i~~~~e~~~vpVivdAGIg~~sda~~AmelG-adgVL~nSaIa~a~dPv~  289 (326)
T PRK11840        238 PYTIRLIVEGATVPVLVDAGVGTASDAAVAMELG-CDGVLMNTAIAEAKNPVL  289 (326)
T ss_pred             HHHHHHHHHcCCCcEEEeCCCCCHHHHHHHHHcC-CCEEEEcceeccCCCHHH
Confidence            456677888888999999999 999999999999 899999888877777654

>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase

Probab=93.39  E-value=0.14  Score=40.74  Aligned_cols=46  Identities=26%  Similarity=0.439  Sum_probs=36.4

Q ss_pred             HHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHHHH
Q 046574           17 MRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLPRR   63 (104)
Q Consensus        17 ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~r   63 (104)
                      .++.+++|||+-||| +.-++-++|..| +|.|.+|+.|...-+-|-+
T Consensus       206 ~a~~~~v~iIADGGi~~sGDi~KAla~G-Ad~VMlG~llAgt~EsPG~  252 (352)
T PF00478_consen  206 AARDYGVPIIADGGIRTSGDIVKALAAG-ADAVMLGSLLAGTDESPGE  252 (352)
T ss_dssp             HHHCTTSEEEEESS-SSHHHHHHHHHTT--SEEEESTTTTTBTTSSSE
T ss_pred             HhhhccCceeecCCcCcccceeeeeeec-ccceeechhhccCcCCCCc
Confidence            445567899999999 888888999999 7999999998877665543

These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....

>PRK00507 deoxyribose-phosphate aldolase; Provisional

Probab=93.36  E-value=0.22  Score=36.97  Aligned_cols=42  Identities=24%  Similarity=0.211  Sum_probs=35.2

Q ss_pred             hHHHHHHHHcC--CeEEEeCCC-CHHHHHHHHHcCCCcEEecchHH
Q 046574           12 HSLLLMRKAFK--GTFLVAGGY-DREDGNKAIAEGRADLVVYGRFF   54 (104)
Q Consensus        12 ~~~~~ir~~~~--~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~   54 (104)
                      +..+.+++..+  .++.++||| |.++|.+.++.| ++.|+..++.
T Consensus       167 ~~v~~m~~~~~~~~~IKasGGIrt~~~a~~~i~aG-A~riGtS~~~  211 (221)
T PRK00507        167 EDVKLMRETVGPRVGVKASGGIRTLEDALAMIEAG-ATRLGTSAGV  211 (221)
T ss_pred             HHHHHHHHHhCCCceEEeeCCcCCHHHHHHHHHcC-cceEccCcHH
Confidence            45566778775  489999999 999999999999 7999987654

>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]

Probab=93.36  E-value=0.33  Score=36.36  Aligned_cols=50  Identities=30%  Similarity=0.323  Sum_probs=42.2

Q ss_pred             HHHHHHHHcC--CeEEEeCCCCHHHHHHHHHcCCCcEEecchHHhhCCcHHHH
Q 046574           13 SLLLMRKAFK--GTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANPDLPRR   63 (104)
Q Consensus        13 ~~~~ir~~~~--~pvi~~Ggi~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~r   63 (104)
                      .+..+++..+  ..|-.+|||+++.+..++..| +|+|.+||......|-.+-
T Consensus       153 ~l~~ik~~~~~g~~vAVaGGI~~~~i~~~~~~~-~~ivIvGraIt~a~dp~~~  204 (217)
T COG0269         153 DLEKIKKLSDLGAKVAVAGGITPEDIPLFKGIG-ADIVIVGRAITGAKDPAEA  204 (217)
T ss_pred             HHHHHHHhhccCceEEEecCCCHHHHHHHhcCC-CCEEEECchhcCCCCHHHH
Confidence            4667888876  488899999999999999988 8999999999888875443

>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional

Probab=93.35  E-value=0.26  Score=37.91  Aligned_cols=43  Identities=16%  Similarity=0.081  Sum_probs=34.5

Q ss_pred             hHHHHHHHHcC--CeEEEeCCCCHHHHHHHHHcCCCcEEecchHHh
Q 046574           12 HSLLLMRKAFK--GTFLVAGGYDREDGNKAIAEGRADLVVYGRFFL   55 (104)
Q Consensus        12 ~~~~~ir~~~~--~pvi~~Ggi~~~~ae~~l~~g~~DlVa~gR~~l   55 (104)
                      +.++.+.+..+  .|+.+.|||+++.+.+++..| +|.|++|...-
T Consensus       220 e~l~~~~~~~~~~i~i~AiGGIt~~ni~~~a~~G-vd~IAvg~l~~  264 (277)
T PRK08072        220 DEIREFVKLVPSAIVTEASGGITLENLPAYGGTG-VDYISLGFLTH  264 (277)
T ss_pred             HHHHHHHHhcCCCceEEEECCCCHHHHHHHHHcC-CCEEEEChhhc
Confidence            34555556555  467799999999999999999 89999998665

>PLN02617 imidazole glycerol phosphate synthase hisHF

Probab=93.32  E-value=0.22  Score=41.66  Aligned_cols=45  Identities=13%  Similarity=0.145  Sum_probs=37.2

Q ss_pred             hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhh
Q 046574           12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLA   56 (104)
Q Consensus        12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~la   56 (104)
                      +..+.+++.+++|||++||+ +++...+++..+.+|.++.|.-|-.
T Consensus       472 ~l~~~v~~~~~ipviasGG~g~~~d~~~~~~~~~~~a~~aa~~fh~  517 (538)
T PLN02617        472 ELVKLVSDAVTIPVIASSGAGTPEHFSDVFSKTNASAALAAGIFHR  517 (538)
T ss_pred             HHHHHHHhhCCCCEEEECCCCCHHHHHHHHhcCCccEEEEEeeecc
Confidence            35567888889999999999 9999999999877888887755443

>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional

Probab=93.28  E-value=0.26  Score=36.31  Aligned_cols=49  Identities=16%  Similarity=0.221  Sum_probs=36.2

Q ss_pred             cchHHHHHHHHcC-CeEEEeCCCCHHHHHHHHHcCCCcEEecchHHhhCCcH
Q 046574           10 CPHSLLLMRKAFK-GTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANPDL   60 (104)
Q Consensus        10 ~~~~~~~ir~~~~-~pvi~~Ggi~~~~ae~~l~~g~~DlVa~gR~~lanPdl   60 (104)
                      .+...+.++.-++ .++|.+||++++.+.+.++.|.+ +++.| .+|.+.++
T Consensus       131 G~~yikal~~plp~~~l~ptGGV~~~n~~~~l~ag~~-~~~gg-s~l~~~~~  180 (201)
T PRK06015        131 GAAFLKALSSPLAGTFFCPTGGISLKNARDYLSLPNV-VCVGG-SWVAPKEL  180 (201)
T ss_pred             CHHHHHHHHhhCCCCcEEecCCCCHHHHHHHHhCCCe-EEEEc-hhhCCchh
Confidence            3567777888776 59999999999999999999854 33334 45545544

>COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism]

Probab=93.26  E-value=0.27  Score=36.93  Aligned_cols=42  Identities=31%  Similarity=0.465  Sum_probs=34.3

Q ss_pred             cCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHHHHH
Q 046574           21 FKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLPRRF   64 (104)
Q Consensus        21 ~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri   64 (104)
                      .+.+||+=|.| ||++|.++++-| ++.|.+|- .|..|..+.+|
T Consensus       179 ~~~~vIAEGr~~tP~~Ak~a~~~G-a~aVvVGs-AITRp~~It~~  221 (229)
T COG3010         179 AGCRVIAEGRYNTPEQAKKAIEIG-ADAVVVGS-AITRPEEITQW  221 (229)
T ss_pred             CCCeEEeeCCCCCHHHHHHHHHhC-CeEEEECc-ccCCHHHHHHH
Confidence            46799999999 999999999999 79999985 45666655443

>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA)

Probab=93.20  E-value=0.24  Score=36.97  Aligned_cols=42  Identities=21%  Similarity=0.165  Sum_probs=35.4

Q ss_pred             hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHh
Q 046574           12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFL   55 (104)
Q Consensus        12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~l   55 (104)
                      +..+.+|+..+.|+++.||| +++++.++++.  +|.|.+|..++
T Consensus       177 ~~i~~lr~~~~~pI~vggGI~~~e~~~~~~~~--ADgvVvGSaiv  219 (242)
T cd04724         177 ELIKRIRKYTDLPIAVGFGISTPEQAAEVAKY--ADGVIVGSALV  219 (242)
T ss_pred             HHHHHHHhcCCCcEEEEccCCCHHHHHHHHcc--CCEEEECHHHH
Confidence            45677888778899999999 79899998765  89999998775

TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.

>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional

Probab=93.20  E-value=0.22  Score=37.03  Aligned_cols=40  Identities=25%  Similarity=0.340  Sum_probs=32.4

Q ss_pred             HHHH-cCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhC
Q 046574           17 MRKA-FKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLAN   57 (104)
Q Consensus        17 ir~~-~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lan   57 (104)
                      +.+. .+.|||++||+ +.++..++...| +|.|.+|+.|-..
T Consensus       176 l~~~~~~~pviasGGv~~~~Dl~~l~~~g-~~gvivg~al~~g  217 (228)
T PRK04128        176 IERFWGDEEFIYAGGVSSAEDVKKLAEIG-FSGVIIGKALYEG  217 (228)
T ss_pred             HHHhcCCCCEEEECCCCCHHHHHHHHHCC-CCEEEEEhhhhcC
Confidence            3344 46799999999 999999988766 8999999987543

>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]

Probab=93.19  E-value=0.28  Score=37.26  Aligned_cols=45  Identities=18%  Similarity=0.229  Sum_probs=37.4

Q ss_pred             hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHc-CCCcEEecchHHhhC
Q 046574           12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAE-GRADLVVYGRFFLAN   57 (104)
Q Consensus        12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~-g~~DlVa~gR~~lan   57 (104)
                      +....+.+.+++|||++||+ |.++.+.+-.. | ++-|.+||++...
T Consensus       181 ~l~~~l~~~~~ipviaSGGv~s~~Di~~l~~~~G-~~GvIvG~ALy~g  227 (241)
T COG0106         181 DLVKELAEAVDIPVIASGGVSSLDDIKALKELSG-VEGVIVGRALYEG  227 (241)
T ss_pred             HHHHHHHHHhCcCEEEecCcCCHHHHHHHHhcCC-CcEEEEehHHhcC
Confidence            35567888889999999999 89998877766 5 7899999998764

>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]

Probab=93.13  E-value=0.25  Score=37.03  Aligned_cols=51  Identities=24%  Similarity=0.284  Sum_probs=40.3

Q ss_pred             HHHHHHcC---Ce-EEEeCCCCHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHhh
Q 046574           15 LLMRKAFK---GT-FLVAGGYDREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEF   66 (104)
Q Consensus        15 ~~ir~~~~---~p-vi~~Ggi~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~~   66 (104)
                      +.+|+..+   .. +-+-|||+.+.+.++.+.| +|.+..|+++..++|+..+++.
T Consensus       158 ~~lr~~~~~~~~~~IeVDGGI~~~t~~~~~~AG-ad~~VaGSalF~~~d~~~~i~~  212 (220)
T COG0036         158 RELRAMIDERLDILIEVDGGINLETIKQLAAAG-ADVFVAGSALFGADDYKATIRE  212 (220)
T ss_pred             HHHHHHhcccCCeEEEEeCCcCHHHHHHHHHcC-CCEEEEEEEEeCCccHHHHHHH
Confidence            44555554   23 4555999999999999999 7999999999999998877765

>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase

Probab=93.05  E-value=0.32  Score=37.06  Aligned_cols=41  Identities=15%  Similarity=0.194  Sum_probs=32.2

Q ss_pred             HHHHHHHcC--CeEEEeCCCCHHHHHHHHHcCCCcEEecchHHh
Q 046574           14 LLLMRKAFK--GTFLVAGGYDREDGNKAIAEGRADLVVYGRFFL   55 (104)
Q Consensus        14 ~~~ir~~~~--~pvi~~Ggi~~~~ae~~l~~g~~DlVa~gR~~l   55 (104)
                      .+.+.+...  .|+.+.|||+++.+.++.+.| +|.|++|...-
T Consensus       212 lk~~v~~~~~~ipi~AsGGI~~~ni~~~a~~G-vd~Isvgait~  254 (265)
T TIGR00078       212 IKEAVQLLKGRVLLEASGGITLDNLEEYAETG-VDVISSGALTH  254 (265)
T ss_pred             HHHHHHHhcCCCcEEEECCCCHHHHHHHHHcC-CCEEEeCHHHc
Confidence            334444443  699999999999999999999 89999976543

Synonym: quinolinate phosphoribosyltransferase (decarboxylating)

>PF01645 Glu_synthase: Conserved region in glutamate synthase; InterPro: IPR002932 Ferredoxin-dependent glutamate synthases have been implicated in a number of functions including photorespiration in Arabidopsis where they may also play a role in primary nitrogen assimilation in roots []

Probab=92.99  E-value=0.19  Score=40.26  Aligned_cols=33  Identities=36%  Similarity=0.479  Sum_probs=27.6

Q ss_pred             CeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhh
Q 046574           23 GTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLA   56 (104)
Q Consensus        23 ~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~la   56 (104)
                      +.||++||+ ++.++-.++.=| +|.|++||++|.
T Consensus       275 V~Li~sGgl~t~~dv~kalaLG-AD~v~igt~~li  308 (368)
T PF01645_consen  275 VSLIASGGLRTGDDVAKALALG-ADAVYIGTAALI  308 (368)
T ss_dssp             SEEEEESS--SHHHHHHHHHCT--SEEE-SHHHHH
T ss_pred             eEEEEeCCccCHHHHHHHHhcC-CCeeEecchhhh
Confidence            479999999 999999999999 799999999883

This region is expressed as a seperate subunit in the glutamate synthase alpha subunit from archaebacteria, or part of a large multidomain enzyme in other organisms. The aligned region of these proteins contains a putative FMN binding site and Fe-S cluster.; GO: 0015930 glutamate synthase activity, 0016638 oxidoreductase activity, acting on the CH-NH2 group of donors, 0006537 glutamate biosynthetic process, 0055114 oxidation-reduction process; PDB: 1EA0_A 2VDC_E 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A.

>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport

Probab=92.88  E-value=0.27  Score=37.58  Aligned_cols=32  Identities=28%  Similarity=0.379  Sum_probs=28.6

Q ss_pred             CCeEEEeCCCCHHHHHHHHHcCCCcEEecchHH
Q 046574           22 KGTFLVAGGYDREDGNKAIAEGRADLVVYGRFF   54 (104)
Q Consensus        22 ~~pvi~~Ggi~~~~ae~~l~~g~~DlVa~gR~~   54 (104)
                      +.|+++.|||+++.+.+..+.| +|.|+++..+
T Consensus       230 ~i~i~AsGGI~~~ni~~~~~~G-vd~I~vsai~  261 (272)
T cd01573         230 PVLLAAAGGINIENAAAYAAAG-ADILVTSAPY  261 (272)
T ss_pred             CceEEEECCCCHHHHHHHHHcC-CcEEEEChhh
Confidence            5799999999999999999998 7999888654

In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.

>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed

Probab=92.84  E-value=0.18  Score=41.31  Aligned_cols=40  Identities=28%  Similarity=0.446  Sum_probs=34.2

Q ss_pred             cCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHH
Q 046574           21 FKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLP   61 (104)
Q Consensus        21 ~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~   61 (104)
                      .+.|||+.||| ++.++-++|.-| +|+|.+|..|..--+-|
T Consensus       330 ~~~~viadGGi~~~~di~kAla~G-A~~v~~G~~~a~~~e~p  370 (486)
T PRK05567        330 YGIPVIADGGIRYSGDIAKALAAG-ASAVMLGSMLAGTEEAP  370 (486)
T ss_pred             CCCeEEEcCCCCCHHHHHHHHHhC-CCEEEECccccccccCC
Confidence            35799999999 999999999999 79999999887655444

>cd00311 TIM Triosephosphate isomerase (TIM) is a glycolytic enzyme that catalyzes the interconversion of dihydroxyacetone phosphate and D-glyceraldehyde-3-phosphate

Probab=92.84  E-value=0.24  Score=37.32  Aligned_cols=54  Identities=19%  Similarity=0.210  Sum_probs=40.7

Q ss_pred             CcchHHHHHHHHcC---------CeEEEeCCCCHHHHHHHHHcCCCcEEecchHHhhCCcHHHH
Q 046574            9 ECPHSLLLMRKAFK---------GTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANPDLPRR   63 (104)
Q Consensus         9 ~~~~~~~~ir~~~~---------~pvi~~Ggi~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~r   63 (104)
                      ++++....||+.+.         ++|+..|+++++.+.+++..+.+|-+.+|+.-+ +|+-..+
T Consensus       177 ~~~ev~~~ir~~l~~~~~~~~~~~~IlYGGSV~~~N~~~l~~~~~vDG~LVG~Asl-~~~~f~~  239 (242)
T cd00311         177 QAQEVHAFIRKLLAELYGEVAEKVRILYGGSVNPENAAELLAQPDIDGVLVGGASL-KAESFLD  239 (242)
T ss_pred             HHHHHHHHHHHHHHHhcccccCceeEEECCCCCHHHHHHHhcCCCCCEEEeehHhh-CHHHHHH
Confidence            44455556666542         478888888999999999999999999999998 4443333

The reaction is very efficient and requires neither cofactors nor metal ions. TIM, usually homodimeric, but in some organisms tetrameric, is ubiqitous and conserved in function across eukaryotes, bacteria and archaea.

>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4

Probab=92.75  E-value=0.12  Score=38.00  Aligned_cols=52  Identities=19%  Similarity=0.292  Sum_probs=37.2

Q ss_pred             CCCCCCcchHHHHHHHHcC-CeEEEeCCCCHHHHHHHHHcCCCcEEecchHHhh
Q 046574            4 VGEKSECPHSLLLMRKAFK-GTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLA   56 (104)
Q Consensus         4 ~~~~~~~~~~~~~ir~~~~-~pvi~~Ggi~~~~ae~~l~~g~~DlVa~gR~~la   56 (104)
                      +.+.-+.+...+.++.-++ .++|.+||++++.+.+.++.| +.++++|..+..
T Consensus       129 PA~~~GG~~~ik~l~~p~p~~~~~ptGGV~~~N~~~~l~ag-~~~vg~Gs~L~~  181 (196)
T PF01081_consen  129 PAGALGGPSYIKALRGPFPDLPFMPTGGVNPDNLAEYLKAG-AVAVGGGSWLFP  181 (196)
T ss_dssp             TTTTTTHHHHHHHHHTTTTT-EEEEBSS--TTTHHHHHTST-TBSEEEESGGGS
T ss_pred             cchhcCcHHHHHHHhccCCCCeEEEcCCCCHHHHHHHHhCC-CEEEEECchhcC
Confidence            3333343566777777775 599999999999999999999 688888876543

1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....

>PRK08745 ribulose-phosphate 3-epimerase; Provisional

Probab=92.74  E-value=0.61  Score=34.75  Aligned_cols=41  Identities=24%  Similarity=0.394  Sum_probs=34.1

Q ss_pred             eEEEeCCCCHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHh
Q 046574           24 TFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANPDLPRRFE   65 (104)
Q Consensus        24 pvi~~Ggi~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~   65 (104)
                      .+-+.|||+.+.+.++.+.| +|.+.+|+++...+|....++
T Consensus       173 ~IeVDGGI~~eti~~l~~aG-aDi~V~GSaiF~~~d~~~~~~  213 (223)
T PRK08745        173 RLEIDGGVKADNIGAIAAAG-ADTFVAGSAIFNAPDYAQVIA  213 (223)
T ss_pred             eEEEECCCCHHHHHHHHHcC-CCEEEEChhhhCCCCHHHHHH
Confidence            46777999999999999999 799999999887778654443

>PRK08091 ribulose-phosphate 3-epimerase; Validated

Probab=92.45  E-value=0.66  Score=34.80  Aligned_cols=41  Identities=17%  Similarity=0.206  Sum_probs=34.3

Q ss_pred             eEEEeCCCCHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHh
Q 046574           24 TFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANPDLPRRFE   65 (104)
Q Consensus        24 pvi~~Ggi~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~   65 (104)
                      .+-+-||++.+.+.++.+.| +|.+..|+++..++|..+.++
T Consensus       181 ~IeVDGGI~~~ti~~l~~aG-aD~~V~GSalF~~~d~~~~i~  221 (228)
T PRK08091        181 LISIDGSMTLELASYLKQHQ-IDWVVSGSALFSQGELKTTLK  221 (228)
T ss_pred             eEEEECCCCHHHHHHHHHCC-CCEEEEChhhhCCCCHHHHHH
Confidence            46666999999999999999 799999999988888655443

>PRK00230 orotidine 5'-phosphate decarboxylase; Reviewed

Probab=92.33  E-value=0.24  Score=36.66  Aligned_cols=52  Identities=29%  Similarity=0.376  Sum_probs=38.9

Q ss_pred             HHHHHHHHcC-CeEEEeCCCCHH-----------HHHHHHHcCCCcEEecchHHhhCCcHHHHHh
Q 046574           13 SLLLMRKAFK-GTFLVAGGYDRE-----------DGNKAIAEGRADLVVYGRFFLANPDLPRRFE   65 (104)
Q Consensus        13 ~~~~ir~~~~-~pvi~~Ggi~~~-----------~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~   65 (104)
                      ....+|+.++ ..++.++|+.++           ...++++.| +|+|.+||+....+|=...++
T Consensus       158 ~~~~ir~~~~~~~~~v~pGI~~~g~~~~dq~~~~~~~~ai~~G-ad~iVvGR~I~~a~dP~~~a~  221 (230)
T PRK00230        158 EAAAIREATGPDFLLVTPGIRPAGSDAGDQKRVMTPAQAIAAG-SDYIVVGRPITQAADPAAAYE  221 (230)
T ss_pred             HHHHHHhhcCCceEEEcCCcCCCCCCcchHHHHhCHHHHHHcC-CCEEEECCcccCCCCHHHHHH
Confidence            3456777764 366778999655           578888877 799999999888887655443

>PRK08649 inosine 5-monophosphate dehydrogenase; Validated

Probab=92.30  E-value=0.27  Score=39.23  Aligned_cols=38  Identities=21%  Similarity=0.166  Sum_probs=30.2

Q ss_pred             HHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchH
Q 046574           14 LLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRF   53 (104)
Q Consensus        14 ~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~   53 (104)
                      ...+.+.+++|||+ |++ |++.|+++++.| +|.|.+|+.
T Consensus       179 i~~~ik~~~ipVIa-G~V~t~e~A~~l~~aG-AD~V~VG~G  217 (368)
T PRK08649        179 LKEFIYELDVPVIV-GGCVTYTTALHLMRTG-AAGVLVGIG  217 (368)
T ss_pred             HHHHHHHCCCCEEE-eCCCCHHHHHHHHHcC-CCEEEECCC
Confidence            33444557889998 778 999999999988 899988865

>PRK14567 triosephosphate isomerase; Provisional

Probab=92.18  E-value=0.33  Score=36.95  Aligned_cols=57  Identities=11%  Similarity=0.099  Sum_probs=42.6

Q ss_pred             CCcchHHHHHHHHc---------CCeEEEeCCCCHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHh
Q 046574            8 SECPHSLLLMRKAF---------KGTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANPDLPRRFE   65 (104)
Q Consensus         8 ~~~~~~~~~ir~~~---------~~pvi~~Ggi~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~   65 (104)
                      .++++....||+.+         +.+++..|+++++.+++++..+.+|-+.+|+.-| +|+-..++.
T Consensus       179 e~i~~~~~~IR~~l~~~~~~~a~~v~IlYGGSV~~~N~~~l~~~~diDG~LVGgasL-~~~~F~~Ii  244 (253)
T PRK14567        179 EQIQETHQFIRSLLAKVDERLAKNIKIVYGGSLKAENAKDILSLPDVDGGLIGGASL-KAAEFNEII  244 (253)
T ss_pred             HHHHHHHHHHHHHHHhhcccccccceEEEcCcCCHHHHHHHHcCCCCCEEEeehhhh-cHHHHHHHH
Confidence            34445556677743         2478887888999999999999999999999988 554444443

>PF04309 G3P_antiterm: Glycerol-3-phosphate responsive antiterminator; InterPro: IPR006699 Glycerol enters bacterial cells via facilitated diffusion, an energy-independent transport process catalysed by the glycerol transport facilitator GlpF, an integral membrane protein of the aquaporin family

Probab=92.11  E-value=0.052  Score=39.27  Aligned_cols=41  Identities=22%  Similarity=0.259  Sum_probs=29.3

Q ss_pred             hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchH
Q 046574           12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRF   53 (104)
Q Consensus        12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~   53 (104)
                      +..+.+++.++.|+|+.|=+ +.+++.++++.| ++.|+-+.+
T Consensus       130 ~vi~~i~~~~~~PiIAGGLI~~~e~v~~al~aG-a~aVSTS~~  171 (175)
T PF04309_consen  130 KVIKKIREETNIPIIAGGLIRTKEDVEEALKAG-ADAVSTSNK  171 (175)
T ss_dssp             HHHCCCCCCCSS-EEEESS--SHHHHHHHCCTT-CEEEEE--H
T ss_pred             HHHHHHHHhcCCCEEeecccCCHHHHHHHHHcC-CEEEEcCCh
Confidence            34445666677899998888 999999999999 688887654

Intracellular glycerol is usually converted to glycerol-3-P in an ATP-requiring phosphorylation reaction catalysed by glycerol kinase (GlpK). Glycerol-3-P, the inducer of the glpFK operon, is not a substrate for GlpF and hence remains entrapped in the cell where it is metabolized further. In some bacterial species, for example Bacillus firmus, glycerol-3-P activates the antiterminator GlpP []. In B. subtilis, glpF and glpK are organised in an operon followed by the glycerol-3-P dehydrogenase-encoding glpD gene and preceded by glpP coding for an antiterminator regulating the expression of glpFK, glpD and glpTQ. Their induction requires the inducer glycerol-3-P, which activates the antiterminator GlpP by allowing it to bind to the leader region of glpD and presumably also of glpFK and glpTQ mRNAs.; GO: 0006355 regulation of transcription, DNA-dependent, 0009607 response to biotic stimulus; PDB: 1VKF_A 3KTS_G.

>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein

Probab=92.00  E-value=0.42  Score=38.22  Aligned_cols=41  Identities=20%  Similarity=0.141  Sum_probs=32.5

Q ss_pred             hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHH
Q 046574           12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFF   54 (104)
Q Consensus        12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~   54 (104)
                      .....+++.+++|||+ |++ +.+.|.++++.| +|.|.+||.-
T Consensus       178 ~~l~~~i~~~~IPVI~-G~V~t~e~A~~~~~aG-aDgV~~G~gg  219 (369)
T TIGR01304       178 LNLKEFIGELDVPVIA-GGVNDYTTALHLMRTG-AAGVIVGPGG  219 (369)
T ss_pred             HHHHHHHHHCCCCEEE-eCCCCHHHHHHHHHcC-CCEEEECCCC
Confidence            3444566777899997 777 999999999988 8998877644

This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.

>PRK13957 indole-3-glycerol-phosphate synthase; Provisional

Probab=91.84  E-value=0.87  Score=34.61  Aligned_cols=51  Identities=16%  Similarity=0.186  Sum_probs=40.4

Q ss_pred             HHHHHHHHcC--CeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHh
Q 046574           13 SLLLMRKAFK--GTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLPRRFE   65 (104)
Q Consensus        13 ~~~~ir~~~~--~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~   65 (104)
                      ....+.+.+.  ..+|+-+|| +++++..+.. + +|.|.+|..++..+|....++
T Consensus       191 ~~~~L~~~ip~~~~~IsESGI~t~~d~~~l~~-~-~davLvG~~lm~~~d~~~~~~  244 (247)
T PRK13957        191 LVEEVAAFLPPNIVKVGESGIESRSDLDKFRK-L-VDAALIGTYFMEKKDIRKAWL  244 (247)
T ss_pred             HHHHHHhhCCCCcEEEEcCCCCCHHHHHHHHH-h-CCEEEECHHHhCCCCHHHHHH
Confidence            3455667764  367888999 9999988764 5 999999999999999776654

>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial

Probab=91.82  E-value=0.42  Score=37.62  Aligned_cols=39  Identities=21%  Similarity=0.335  Sum_probs=32.9

Q ss_pred             hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecc
Q 046574           12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYG   51 (104)
Q Consensus        12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~g   51 (104)
                      +..+.+|+.++.|++..|++ +++.|+.+++.| +|.|-+|
T Consensus       126 ~~i~~i~~~~p~~~vi~GnV~t~e~a~~l~~aG-ad~I~V~  165 (321)
T TIGR01306       126 NMIKHIKTHLPDSFVIAGNVGTPEAVRELENAG-ADATKVG  165 (321)
T ss_pred             HHHHHHHHhCCCCEEEEecCCCHHHHHHHHHcC-cCEEEEC
Confidence            45678999998898999999 999999999999 6876443

A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.

>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional

Probab=91.76  E-value=0.48  Score=35.31  Aligned_cols=41  Identities=24%  Similarity=0.220  Sum_probs=32.4

Q ss_pred             HHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHh
Q 046574           13 SLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFL   55 (104)
Q Consensus        13 ~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~l   55 (104)
                      ..+.+++. ..|+|++||+ +.++..++...| +|.+.+|+++-
T Consensus       181 l~~~~~~~-~~~viasGGv~s~~Dl~~l~~~G-~~gvivg~Aly  222 (232)
T PRK13586        181 VKDYARLI-RGLKEYAGGVSSDADLEYLKNVG-FDYIIVGMAFY  222 (232)
T ss_pred             HHHHHHhC-CCCEEEECCCCCHHHHHHHHHCC-CCEEEEehhhh
Confidence            34445544 5579999999 999998888776 89999999874

>PRK07315 fructose-bisphosphate aldolase; Provisional

Probab=91.49  E-value=0.88  Score=35.19  Aligned_cols=52  Identities=15%  Similarity=0.086  Sum_probs=43.7

Q ss_pred             hHHHHHHHHc-CCeEEEeCC--CCHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHhh
Q 046574           12 HSLLLMRKAF-KGTFLVAGG--YDREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEF   66 (104)
Q Consensus        12 ~~~~~ir~~~-~~pvi~~Gg--i~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~~   66 (104)
                      +.++.|++.+ ++||++-||  ++.+.+.++++.| ++-|.+++.+..  ++...+++
T Consensus       191 e~L~~i~~~~~~iPlVlhGGSGi~~e~~~~~i~~G-i~KiNv~T~i~~--~~~~~~~~  245 (293)
T PRK07315        191 DHLEKLTEAVPGFPIVLHGGSGIPDDQIQEAIKLG-VAKVNVNTECQI--AFANATRK  245 (293)
T ss_pred             HHHHHHHHhccCCCEEEECCCCCCHHHHHHHHHcC-CCEEEEccHHHH--HHHHHHHH
Confidence            5778899988 489999999  8999999999999 799999999887  55555544

>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4

Probab=91.29  E-value=0.69  Score=35.29  Aligned_cols=42  Identities=26%  Similarity=0.279  Sum_probs=35.7

Q ss_pred             hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHh
Q 046574           12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFL   55 (104)
Q Consensus        12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~l   55 (104)
                      +..+.+|+..+.||++.=|| ++++++++. .+ +|.|.+|..++
T Consensus       188 ~~i~~ik~~~~~Pv~vGFGI~~~e~~~~~~-~~-aDGvIVGSa~v  230 (259)
T PF00290_consen  188 EFIKRIKKHTDLPVAVGFGISTPEQAKKLA-AG-ADGVIVGSAFV  230 (259)
T ss_dssp             HHHHHHHHTTSS-EEEESSS-SHHHHHHHH-TT-SSEEEESHHHH
T ss_pred             HHHHHHHhhcCcceEEecCCCCHHHHHHHH-cc-CCEEEECHHHH
Confidence            56778999988899999899 999999998 45 89999999876

2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....

>cd02068 radical_SAM_B12_BD B12 binding domain_like associated with radical SAM domain

Probab=91.23  E-value=0.64  Score=30.78  Aligned_cols=61  Identities=18%  Similarity=0.153  Sum_probs=42.4

Q ss_pred             hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHhhCCCCCC
Q 046574           12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEFNAPLNK   72 (104)
Q Consensus        12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~~g~~l~~   72 (104)
                      ..++.+|+......++.||. .....+.++....+|.|..|=+=..=++|++.+..|+++..
T Consensus        57 ~~~~~ik~~~p~~~iv~GG~~~t~~p~~~~~~~~~D~vv~GEgE~~~~~l~~~l~~g~~~~~  118 (127)
T cd02068          57 ELAKIAKEVLPNVIVVVGGPHATFFPEEILEEPGVDFVVIGEGEETFLKLLEELEEGEDLSE  118 (127)
T ss_pred             HHHHHHHHHCCCCEEEECCcchhhCHHHHhcCCCCCEEEECCcHHHHHHHHHHHHcCCCccc
Confidence            46677888876556666665 21222333455568999999988888999999988866543

This domain shows similarity with B12 (adenosylcobamide) binding domains found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase, but it lacks the signature motif Asp-X-His-X-X-Gly, which contains the histidine that acts as a cobalt ligand. The function of this domain remains unclear.

>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional

Probab=90.92  E-value=0.45  Score=36.53  Aligned_cols=31  Identities=19%  Similarity=0.245  Sum_probs=28.3

Q ss_pred             eEEEeCCCCHHHHHHHHHcCCCcEEecchHHh
Q 046574           24 TFLVAGGYDREDGNKAIAEGRADLVVYGRFFL   55 (104)
Q Consensus        24 pvi~~Ggi~~~~ae~~l~~g~~DlVa~gR~~l   55 (104)
                      .++++|||+++.+.+....| +|+|++|...-
T Consensus       231 ~ieAsGgIt~~ni~~ya~~G-vD~IsvG~l~~  261 (273)
T PRK05848        231 LLEASGNITLENINAYAKSG-VDAISSGSLIH  261 (273)
T ss_pred             EEEEECCCCHHHHHHHHHcC-CCEEEeChhhc
Confidence            59999999999999999998 79999998665

>cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS)

Probab=90.61  E-value=0.62  Score=36.64  Aligned_cols=40  Identities=25%  Similarity=0.251  Sum_probs=33.4

Q ss_pred             CCeEEEeCCC-CHHHHHHHHHcCC-------CcEEecchHHhhCCcHH
Q 046574           22 KGTFLVAGGY-DREDGNKAIAEGR-------ADLVVYGRFFLANPDLP   61 (104)
Q Consensus        22 ~~pvi~~Ggi-~~~~ae~~l~~g~-------~DlVa~gR~~lanPdl~   61 (104)
                      ++|||++||| +...+..++.-|.       .+-|.+|..||+-++-+
T Consensus       165 ~iPViAAGGI~dgr~~aaalaLGA~~~~~Ga~~GV~mGTrFl~t~Es~  212 (320)
T cd04743         165 KIHLLFAGGIHDERSAAMVSALAAPLAERGAKVGVLMGTAYLFTEEAV  212 (320)
T ss_pred             CccEEEEcCCCCHHHHHHHHHcCCcccccccccEEEEccHHhcchhhc
Confidence            6899999999 8888777777664       27999999999977763

NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.

>PRK14057 epimerase; Provisional

Probab=90.59  E-value=1.5  Score=33.43  Aligned_cols=42  Identities=21%  Similarity=0.311  Sum_probs=35.1

Q ss_pred             eEEEeCCCCHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHhh
Q 046574           24 TFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEF   66 (104)
Q Consensus        24 pvi~~Ggi~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~~   66 (104)
                      .+-+-|||+.+.+.++.+.| +|.+..|+++..++|+.+.+..
T Consensus       195 ~IeVDGGI~~~ti~~l~~aG-ad~~V~GSalF~~~d~~~~i~~  236 (254)
T PRK14057        195 IIVIDGSLTQDQLPSLIAQG-IDRVVSGSALFRDDRLVENTRS  236 (254)
T ss_pred             eEEEECCCCHHHHHHHHHCC-CCEEEEChHhhCCCCHHHHHHH
Confidence            46667999999999999999 7999999999888886555543

>PTZ00333 triosephosphate isomerase; Provisional

Probab=90.59  E-value=0.72  Score=35.07  Aligned_cols=55  Identities=16%  Similarity=0.241  Sum_probs=42.5

Q ss_pred             cchHHHHHHHHc----------CCeEEEeCCCCHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHh
Q 046574           10 CPHSLLLMRKAF----------KGTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANPDLPRRFE   65 (104)
Q Consensus        10 ~~~~~~~ir~~~----------~~pvi~~Ggi~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~   65 (104)
                      +.+....||+.+          +.+|+..|+++++.+.+++....+|-+.+|+.-+. ++|..-+.
T Consensus       185 i~~~~~~IR~~l~~~~~~~~~~~~~ILYGGSV~~~N~~~l~~~~~vDG~LvG~asl~-~~f~~Ii~  249 (255)
T PTZ00333        185 AQEVHAFIRKWLAEKVGADVAEATRIIYGGSVNEKNCKELIKQPDIDGFLVGGASLK-PDFVDIIK  249 (255)
T ss_pred             HHHHHHHHHHHHHHhhcccccccceEEEcCCCCHHHHHHHhcCCCCCEEEEehHhhh-hhHHHHHH
Confidence            334555677633          25788888889999999999888999999999986 78766543

>PRK07107 inosine 5-monophosphate dehydrogenase; Validated

Probab=90.58  E-value=0.37  Score=39.90  Aligned_cols=40  Identities=28%  Similarity=0.400  Sum_probs=34.0

Q ss_pred             CeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHHHH
Q 046574           23 GTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLPRR   63 (104)
Q Consensus        23 ~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~r   63 (104)
                      +|||+-||| +.-++-++|.-| +|+|.+||+|.-.-+-|-.
T Consensus       353 ~~viadgGir~~gdi~KAla~G-A~~vm~G~~~ag~~espg~  393 (502)
T PRK07107        353 IPICSDGGIVYDYHMTLALAMG-ADFIMLGRYFARFDESPTN  393 (502)
T ss_pred             ceEEEcCCCCchhHHHHHHHcC-CCeeeeChhhhccccCCCc
Confidence            699999999 778888999888 7999999999876655544

>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water

Probab=90.54  E-value=0.67  Score=33.50  Aligned_cols=45  Identities=27%  Similarity=0.083  Sum_probs=36.5

Q ss_pred             chHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhh
Q 046574           11 PHSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLA   56 (104)
Q Consensus        11 ~~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~la   56 (104)
                      .+.+..+++.+++||+.-|++ ++++++.+.+.| +|.|.++-..+.
T Consensus        61 ~~~~~~i~~~v~iPi~~~~~i~~~~~v~~~~~~G-ad~v~l~~~~~~  106 (217)
T cd00331          61 LEDLRAVREAVSLPVLRKDFIIDPYQIYEARAAG-ADAVLLIVAALD  106 (217)
T ss_pred             HHHHHHHHHhcCCCEEECCeecCHHHHHHHHHcC-CCEEEEeeccCC
Confidence            356678888888999987766 888999999999 799988766554

IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.

>PRK07807 inosine 5-monophosphate dehydrogenase; Validated

Probab=90.54  E-value=0.58  Score=38.55  Aligned_cols=37  Identities=30%  Similarity=0.379  Sum_probs=30.8

Q ss_pred             hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEe
Q 046574           12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVV   49 (104)
Q Consensus        12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa   49 (104)
                      +..+.||+.+....+.+|++ |.+.|+.+++.| +|+|.
T Consensus       257 ~~i~~ik~~~p~~~v~agnv~t~~~a~~l~~aG-ad~v~  294 (479)
T PRK07807        257 EALRAVRALDPGVPIVAGNVVTAEGTRDLVEAG-ADIVK  294 (479)
T ss_pred             HHHHHHHHHCCCCeEEeeccCCHHHHHHHHHcC-CCEEE
Confidence            46778999886656666889 999999999999 79876

>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional

Probab=90.47  E-value=0.44  Score=37.93  Aligned_cols=46  Identities=24%  Similarity=0.395  Sum_probs=37.0

Q ss_pred             HHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHHHHH
Q 046574           18 RKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLPRRF   64 (104)
Q Consensus        18 r~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri   64 (104)
                      ...+++|||+-||| +.-++-++|..| +|+|.+|..|...-+-|-.+
T Consensus       209 a~~~gvpiIADGGi~~sGDI~KAlaaG-Ad~VMlGsllAGt~EsPGe~  255 (346)
T PRK05096        209 AHGLGGQIVSDGGCTVPGDVAKAFGGG-ADFVMLGGMLAGHEESGGEI  255 (346)
T ss_pred             HHHcCCCEEecCCcccccHHHHHHHcC-CCEEEeChhhcCcccCCCcE
Confidence            34567899999999 667777888888 79999999998877666544

>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional

Probab=90.34  E-value=0.55  Score=36.35  Aligned_cols=36  Identities=14%  Similarity=0.154  Sum_probs=31.0

Q ss_pred             CCeEEEeCCCCHHHHHHHHHcCCCcEEecchHHhhCC
Q 046574           22 KGTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANP   58 (104)
Q Consensus        22 ~~pvi~~Ggi~~~~ae~~l~~g~~DlVa~gR~~lanP   58 (104)
                      +.++.++|||+++.+.+....| +|.|++|....+-|
T Consensus       243 ~i~leAsGGIt~~ni~~ya~tG-vD~Isvgsl~~sa~  278 (288)
T PRK07428        243 RVKIEASGNITLETIRAVAETG-VDYISSSAPITRSP  278 (288)
T ss_pred             CeEEEEECCCCHHHHHHHHHcC-CCEEEEchhhhCCC
Confidence            3589999999999999999988 89999998776433

>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional

Probab=90.32  E-value=0.56  Score=35.04  Aligned_cols=45  Identities=18%  Similarity=0.293  Sum_probs=36.7

Q ss_pred             chHHHHHHHHcC-CeEEEeCCCCH--HHHHHHHHcCCCcEEecchHHhh
Q 046574           11 PHSLLLMRKAFK-GTFLVAGGYDR--EDGNKAIAEGRADLVVYGRFFLA   56 (104)
Q Consensus        11 ~~~~~~ir~~~~-~pvi~~Ggi~~--~~ae~~l~~g~~DlVa~gR~~la   56 (104)
                      +...+.++.-+. .++|.+||+++  +.+.+.++.| +..|++|..+..
T Consensus       146 ~~~ikal~~p~p~i~~~ptGGV~~~~~n~~~yl~aG-a~avg~Gs~L~~  193 (222)
T PRK07114        146 PGFVKAIKGPMPWTKIMPTGGVEPTEENLKKWFGAG-VTCVGMGSKLIP  193 (222)
T ss_pred             HHHHHHHhccCCCCeEEeCCCCCcchhcHHHHHhCC-CEEEEEChhhcC
Confidence            456666776665 58999999977  8999999998 799999988763

>PRK13305 sgbH 3-keto-L-gulonate-6-phosphate decarboxylase; Provisional

Probab=90.18  E-value=0.33  Score=36.08  Aligned_cols=52  Identities=15%  Similarity=0.109  Sum_probs=39.5

Q ss_pred             hHHHHHHHHcCC--eEEEeCCCCHHHHHHHHHcCCCcEEecchHHhhCCcHHHHH
Q 046574           12 HSLLLMRKAFKG--TFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANPDLPRRF   64 (104)
Q Consensus        12 ~~~~~ir~~~~~--pvi~~Ggi~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri   64 (104)
                      +.+..+|+..+.  +++++|||+++.+...-+. .+|+|.+|||....+|=...+
T Consensus       151 ~e~~~ir~~~~~~~~i~VtpGIr~~~~~~~dq~-rvd~iVVGR~It~A~dP~~aa  204 (218)
T PRK13305        151 ADLARMKALSDIGLELSITGGITPADLPLFKDI-RVKAFIAGRALAGAANPAQVA  204 (218)
T ss_pred             HHHHHHHHHhCCCCcEEEeCCcCcccccccccc-CCCEEEECCcccCCCCHHHHH
Confidence            346678888753  4899999998887666444 479999999999888765543

>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional

Probab=90.10  E-value=1.3  Score=36.35  Aligned_cols=52  Identities=12%  Similarity=0.050  Sum_probs=40.8

Q ss_pred             HHHHHHHHcC--CeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHhh
Q 046574           13 SLLLMRKAFK--GTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEF   66 (104)
Q Consensus        13 ~~~~ir~~~~--~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~~   66 (104)
                      ....+.+.+.  ..+|+-+|| +++++..+ ..| +|.|.+|..++.+||....+++
T Consensus       199 ~~~~l~~~ip~~~~~vseSGI~t~~d~~~~-~~~-~davLiG~~lm~~~d~~~~~~~  253 (454)
T PRK09427        199 RTRELAPLIPADVIVISESGIYTHAQVREL-SPF-ANGFLIGSSLMAEDDLELAVRK  253 (454)
T ss_pred             HHHHHHhhCCCCcEEEEeCCCCCHHHHHHH-Hhc-CCEEEECHHHcCCCCHHHHHHH
Confidence            3445666664  367777999 99999886 567 9999999999999998765554

>COG1954 GlpP Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]

Probab=89.91  E-value=0.73  Score=33.56  Aligned_cols=38  Identities=16%  Similarity=0.196  Sum_probs=30.9

Q ss_pred             chHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEe
Q 046574           11 PHSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVV   49 (104)
Q Consensus        11 ~~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa   49 (104)
                      ++..+.+.+++++|+|+.|-+ +.|++.++|..|. -.|+
T Consensus       133 Pkvi~~i~~~t~~piIAGGLi~t~Eev~~Al~aGA-~avS  171 (181)
T COG1954         133 PKVIKEITEKTHIPIIAGGLIETEEEVREALKAGA-VAVS  171 (181)
T ss_pred             HHHHHHHHHhcCCCEEeccccccHHHHHHHHHhCc-EEEe
Confidence            456677888888999997777 9999999999994 4554

>PRK14565 triosephosphate isomerase; Provisional

Probab=89.84  E-value=0.64  Score=35.07  Aligned_cols=55  Identities=13%  Similarity=0.126  Sum_probs=41.8

Q ss_pred             CcchHHHHHHHHcC-CeEEEeCCCCHHHHHHHHHcCCCcEEecchHHhhCCcHHHHH
Q 046574            9 ECPHSLLLMRKAFK-GTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANPDLPRRF   64 (104)
Q Consensus         9 ~~~~~~~~ir~~~~-~pvi~~Ggi~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri   64 (104)
                      .+.+....||+..+ .+|+..|+++++.+++++..-.+|-+.+|+.-+ +|+-..++
T Consensus       175 ~i~~~~~~Ir~~~~~~~IlYGGSV~~~N~~~l~~~~~iDG~LvG~asl-~~~~f~~i  230 (237)
T PRK14565        175 AIAEAFEIIRSYDSKSHIIYGGSVNQENIRDLKSINQLSGVLVGSASL-DVDSFCKI  230 (237)
T ss_pred             HHHHHHHHHHHhCCCceEEEcCccCHhhHHHHhcCCCCCEEEEechhh-cHHHHHHH
Confidence            33455667887654 588888888999999999987799999999998 54433444

>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]

Probab=89.84  E-value=1.4  Score=33.67  Aligned_cols=42  Identities=21%  Similarity=0.286  Sum_probs=36.6

Q ss_pred             hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHH
Q 046574           12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFF   54 (104)
Q Consensus        12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~   54 (104)
                      ..++.|++..++|||+-.|| +|.+|.++++=| +|.|.+-.+.
T Consensus       172 ~~l~iiie~a~VPviVDAGiG~pSdAa~aMElG-~DaVL~NTAi  214 (262)
T COG2022         172 YNLEIIIEEADVPVIVDAGIGTPSDAAQAMELG-ADAVLLNTAI  214 (262)
T ss_pred             HHHHHHHHhCCCCEEEeCCCCChhHHHHHHhcc-cceeehhhHh
Confidence            57788999999999999999 999999999988 7988775443

>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist

Probab=89.68  E-value=1  Score=34.56  Aligned_cols=43  Identities=19%  Similarity=0.148  Sum_probs=37.5

Q ss_pred             hHHHHHHHHcCCeEEEeC--CCCHHHHHHHHHcCCCcEEecchHHh
Q 046574           12 HSLLLMRKAFKGTFLVAG--GYDREDGNKAIAEGRADLVVYGRFFL   55 (104)
Q Consensus        12 ~~~~~ir~~~~~pvi~~G--gi~~~~ae~~l~~g~~DlVa~gR~~l   55 (104)
                      +.++.|++.+++||.+-|  ||+.+...++++.| ++-|.++..+.
T Consensus       190 e~L~~i~~~~~iPlv~hGgSGi~~e~i~~~i~~G-i~kiNv~T~l~  234 (282)
T TIGR01859       190 ERLKEIKELTNIPLVLHGASGIPEEQIKKAIKLG-IAKINIDTDCR  234 (282)
T ss_pred             HHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHcC-CCEEEECcHHH
Confidence            466778888899999999  89999999999998 79999987664

This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.

>PLN02274 inosine-5'-monophosphate dehydrogenase

Probab=89.39  E-value=0.74  Score=38.16  Aligned_cols=38  Identities=13%  Similarity=0.218  Sum_probs=31.0

Q ss_pred             hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEec
Q 046574           12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVY   50 (104)
Q Consensus        12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~   50 (104)
                      +..+.||+.+....+..|++ |++.|+.+++.| +|.|.+
T Consensus       278 ~~i~~ik~~~p~~~vi~g~v~t~e~a~~a~~aG-aD~i~v  316 (505)
T PLN02274        278 EMIKYIKKTYPELDVIGGNVVTMYQAQNLIQAG-VDGLRV  316 (505)
T ss_pred             HHHHHHHHhCCCCcEEEecCCCHHHHHHHHHcC-cCEEEE
Confidence            46788999887656666888 999999999999 799844

>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4

Probab=89.19  E-value=0.81  Score=33.55  Aligned_cols=51  Identities=25%  Similarity=0.328  Sum_probs=35.6

Q ss_pred             hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHhh
Q 046574           12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEF   66 (104)
Q Consensus        12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~~   66 (104)
                      +..+.+++.+...++.+|.+ |.++++++++.| ++|+.-=   -.||++.+..++
T Consensus        48 ~~I~~l~~~~p~~~vGAGTV~~~e~a~~a~~aG-A~FivSP---~~~~~v~~~~~~   99 (196)
T PF01081_consen   48 EAIEALRKEFPDLLVGAGTVLTAEQAEAAIAAG-AQFIVSP---GFDPEVIEYARE   99 (196)
T ss_dssp             HHHHHHHHHHTTSEEEEES--SHHHHHHHHHHT--SEEEES---S--HHHHHHHHH
T ss_pred             HHHHHHHHHCCCCeeEEEeccCHHHHHHHHHcC-CCEEECC---CCCHHHHHHHHH
Confidence            45666788888889999999 999999999999 5765431   256666655443

1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....

>TIGR00259 thylakoid_BtpA membrane complex biogenesis protein, BtpA family

Probab=89.14  E-value=1  Score=34.48  Aligned_cols=41  Identities=20%  Similarity=0.225  Sum_probs=33.4

Q ss_pred             HHHHHHHHc-CCeEEEeCCCCHHHHHHHHHcCCCcEEecchHHh
Q 046574           13 SLLLMRKAF-KGTFLVAGGYDREDGNKAIAEGRADLVVYGRFFL   55 (104)
Q Consensus        13 ~~~~ir~~~-~~pvi~~Ggi~~~~ae~~l~~g~~DlVa~gR~~l   55 (104)
                      .++.+|+.. +.||+++||++++.+.++++.  +|.+-+|..|=
T Consensus       190 ~l~~vr~~~~~~PvllggGvt~eNv~e~l~~--adGviVgS~~K  231 (257)
T TIGR00259       190 LLKLAKETVKDTPVLAGSGVNLENVEELLSI--ADGVIVATTIK  231 (257)
T ss_pred             HHHHHHhccCCCeEEEECCCCHHHHHHHHhh--CCEEEECCCcc
Confidence            455676645 469999999999999999984  89998887764

Members of this family are found in C. elegans, Synechocystis sp., E. coli, and several of the Archaea. Members in Cyanobacteria have been shown to play a role in protein complex biogenesis, and designated BtpA (biogenesis of thylakoid protein). Homologs in non-photosynthetic species, where thylakoid intracytoplasmic membranes are lacking, are likely to act elsewhere in membrane protein biogenesis.

>PLN02460 indole-3-glycerol-phosphate synthase

Probab=89.09  E-value=1.1  Score=35.61  Aligned_cols=42  Identities=14%  Similarity=0.158  Sum_probs=36.3

Q ss_pred             eEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHhh
Q 046574           24 TFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEF   66 (104)
Q Consensus        24 pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~~   66 (104)
                      .+|+-+|| +++++..+.+.| +|.|.+|-.++..||.-..+++
T Consensus       290 ~~VsESGI~t~~Dv~~l~~~G-adAvLVGEsLMr~~dp~~~l~~  332 (338)
T PLN02460        290 IVVGESGLFTPDDVAYVQNAG-VKAVLVGESLVKQDDPGKGIAG  332 (338)
T ss_pred             EEEECCCCCCHHHHHHHHHCC-CCEEEECHHHhCCCCHHHHHHH
Confidence            56777999 999999999888 8999999999999997666553

>PRK09722 allulose-6-phosphate 3-epimerase; Provisional

Probab=89.07  E-value=1.8  Score=32.42  Aligned_cols=40  Identities=20%  Similarity=0.414  Sum_probs=31.2

Q ss_pred             eEEEeCCCCHHHHHHHHHcCCCcEEecchH-Hhh-CCcHHHHH
Q 046574           24 TFLVAGGYDREDGNKAIAEGRADLVVYGRF-FLA-NPDLPRRF   64 (104)
Q Consensus        24 pvi~~Ggi~~~~ae~~l~~g~~DlVa~gR~-~la-nPdl~~ri   64 (104)
                      .+.+-|||+.+.+.++.+.| +|.+..|+. +.. ++|..+.+
T Consensus       171 ~IeVDGGI~~~~i~~~~~aG-ad~~V~Gss~iF~~~~d~~~~i  212 (229)
T PRK09722        171 LIEVDGSCNQKTYEKLMEAG-ADVFIVGTSGLFNLDEDIDEAW  212 (229)
T ss_pred             EEEEECCCCHHHHHHHHHcC-CCEEEEChHHHcCCCCCHHHHH
Confidence            46677999999999999999 799999986 544 46754433

>cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain

Probab=88.98  E-value=1  Score=35.95  Aligned_cols=37  Identities=32%  Similarity=0.445  Sum_probs=32.4

Q ss_pred             HHHHHHHHcCCeEEEeCCCCHHHHHHHHHcCCCcEEec
Q 046574           13 SLLLMRKAFKGTFLVAGGYDREDGNKAIAEGRADLVVY   50 (104)
Q Consensus        13 ~~~~ir~~~~~pvi~~Ggi~~~~ae~~l~~g~~DlVa~   50 (104)
                      ..+.||+.+++|+|+-|=+++++|+.+++.| +|.|.+
T Consensus       227 ~i~~ir~~~~~pviiKgV~~~eda~~a~~~G-~d~I~V  263 (361)
T cd04736         227 DLRWLRDLWPHKLLVKGIVTAEDAKRCIELG-ADGVIL  263 (361)
T ss_pred             HHHHHHHhCCCCEEEecCCCHHHHHHHHHCC-cCEEEE
Confidence            6678999999999998755999999999998 798875

MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).

>TIGR01182 eda Entner-Doudoroff aldolase

Probab=88.77  E-value=1.1  Score=33.06  Aligned_cols=51  Identities=24%  Similarity=0.350  Sum_probs=38.8

Q ss_pred             hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHhh
Q 046574           12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEF   66 (104)
Q Consensus        12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~~   66 (104)
                      +..+.+++.++..+|.+|.+ |+++++++++.| ++|+.-  |- .||++.+..++
T Consensus        48 ~~i~~l~~~~~~~~vGAGTVl~~~~a~~a~~aG-A~Fivs--P~-~~~~v~~~~~~   99 (204)
T TIGR01182        48 DAIRLLRKEVPDALIGAGTVLNPEQLRQAVDAG-AQFIVS--PG-LTPELAKHAQD   99 (204)
T ss_pred             HHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHcC-CCEEEC--CC-CCHHHHHHHHH
Confidence            45667787777778999999 999999999999 688732  11 37788776554

2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida

>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional

Probab=88.77  E-value=1.9  Score=37.32  Aligned_cols=53  Identities=15%  Similarity=0.062  Sum_probs=42.3

Q ss_pred             HHHHHHHHcC--CeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHhh
Q 046574           13 SLLLMRKAFK--GTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEF   66 (104)
Q Consensus        13 ~~~~ir~~~~--~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~~   66 (104)
                      ....+++.+.  ..+|+-+|| +++++..+.+.| +|.|.+|..++..||....+++
T Consensus       200 ~t~~L~~~ip~~~~~VsESGI~~~~d~~~l~~~G-~davLIGeslm~~~dp~~~~~~  255 (695)
T PRK13802        200 KYNELAADLPDDVIKVAESGVFGAVEVEDYARAG-ADAVLVGEGVATADDHELAVER  255 (695)
T ss_pred             HHHHHHhhCCCCcEEEEcCCCCCHHHHHHHHHCC-CCEEEECHHhhCCCCHHHHHHH
Confidence            4455667664  367777999 999999999888 8999999999999996655543

>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional

Probab=88.68  E-value=1.1  Score=33.04  Aligned_cols=51  Identities=12%  Similarity=0.111  Sum_probs=37.6

Q ss_pred             hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHhh
Q 046574           12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEF   66 (104)
Q Consensus        12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~~   66 (104)
                      +..+.+++.++..+|.+|.+ |+++++++++.| ++|+.-=   -.||++.+..++
T Consensus        44 ~~I~~l~~~~~~~~vGAGTVl~~e~a~~ai~aG-A~FivSP---~~~~~vi~~a~~   95 (201)
T PRK06015         44 DAIRAVAAEVEEAIVGAGTILNAKQFEDAAKAG-SRFIVSP---GTTQELLAAAND   95 (201)
T ss_pred             HHHHHHHHHCCCCEEeeEeCcCHHHHHHHHHcC-CCEEECC---CCCHHHHHHHHH
Confidence            45566777777788999999 999999999999 6765431   256666665443

>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain

Probab=88.53  E-value=1.2  Score=35.92  Aligned_cols=38  Identities=24%  Similarity=0.350  Sum_probs=33.1

Q ss_pred             hHHHHHHHHcCCeEEEeCCCCHHHHHHHHHcCCCcEEec
Q 046574           12 HSLLLMRKAFKGTFLVAGGYDREDGNKAIAEGRADLVVY   50 (104)
Q Consensus        12 ~~~~~ir~~~~~pvi~~Ggi~~~~ae~~l~~g~~DlVa~   50 (104)
                      +.++.|++.+++|||+-|-+++++|+.+++.| +|.|.+
T Consensus       243 ~~i~~lr~~~~~pvivKgV~~~~dA~~a~~~G-~d~I~v  280 (383)
T cd03332         243 EDLAFLREWTDLPIVLKGILHPDDARRAVEAG-VDGVVV  280 (383)
T ss_pred             HHHHHHHHhcCCCEEEecCCCHHHHHHHHHCC-CCEEEE
Confidence            46678999999999998767999999999998 798876

LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.

>cd01571 NAPRTase_B Nicotinate phosphoribosyltransferase (NAPRTase), subgroup B

Probab=88.49  E-value=0.61  Score=36.10  Aligned_cols=43  Identities=26%  Similarity=0.267  Sum_probs=33.9

Q ss_pred             HHHHHHHHcC------CeEEEeCCCCHHHHHHHHHcCCCcEEecchHHhh
Q 046574           13 SLLLMRKAFK------GTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLA   56 (104)
Q Consensus        13 ~~~~ir~~~~------~pvi~~Ggi~~~~ae~~l~~g~~DlVa~gR~~la   56 (104)
                      ..+.+++.++      ..++++|||+++.+.+....| +|++++|..+..
T Consensus       230 ~~~~~~~~l~~~g~~~~~ieaSGgI~~~~i~~~a~~g-vD~isvGs~~~~  278 (302)
T cd01571         230 LIREVRWALDIRGYKHVKIFVSGGLDEEDIKELEDVG-VDAFGVGTAISK  278 (302)
T ss_pred             HHHHHHHHHHhCCCCCeEEEEeCCCCHHHHHHHHHcC-CCEEECCcccCC
Confidence            3455555541      369999999999999999988 899999987754

Nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis. This salvage pathway serves to recycle NAD degradation products.

>PLN02979 glycolate oxidase

Probab=88.46  E-value=1.1  Score=35.98  Aligned_cols=38  Identities=26%  Similarity=0.298  Sum_probs=33.0

Q ss_pred             hHHHHHHHHcCCeEEEeCCCCHHHHHHHHHcCCCcEEec
Q 046574           12 HSLLLMRKAFKGTFLVAGGYDREDGNKAIAEGRADLVVY   50 (104)
Q Consensus        12 ~~~~~ir~~~~~pvi~~Ggi~~~~ae~~l~~g~~DlVa~   50 (104)
                      +.++.+|+.|++|||+=|-.++++|+.+++.| +|.|.+
T Consensus       213 ~dl~wlr~~~~~PvivKgV~~~~dA~~a~~~G-vd~I~V  250 (366)
T PLN02979        213 KDVQWLQTITKLPILVKGVLTGEDARIAIQAG-AAGIIV  250 (366)
T ss_pred             HHHHHHHhccCCCEEeecCCCHHHHHHHHhcC-CCEEEE
Confidence            46778999999999997766999999999999 788776

>PLN02716 nicotinate-nucleotide diphosphorylase (carboxylating)

Probab=88.33  E-value=1.2  Score=34.98  Aligned_cols=32  Identities=13%  Similarity=0.040  Sum_probs=28.3

Q ss_pred             CeEEEeCCCCHHHHHHHHHcCCCcEEecchHHh
Q 046574           23 GTFLVAGGYDREDGNKAIAEGRADLVVYGRFFL   55 (104)
Q Consensus        23 ~pvi~~Ggi~~~~ae~~l~~g~~DlVa~gR~~l   55 (104)
                      .++.++|||+++.+.+....| +|+|++|...-
T Consensus       263 ~~lEaSGGIt~~ni~~yA~tG-VD~Is~Galth  294 (308)
T PLN02716        263 FETEASGNVTLDTVHKIGQTG-VTYISSGALTH  294 (308)
T ss_pred             ceEEEECCCCHHHHHHHHHcC-CCEEEeCcccc
Confidence            379999999999999999888 89999997654

>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional

Probab=88.28  E-value=1  Score=35.84  Aligned_cols=36  Identities=28%  Similarity=0.341  Sum_probs=29.6

Q ss_pred             hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEE
Q 046574           12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLV   48 (104)
Q Consensus        12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlV   48 (104)
                      +..+.||+.+....|.+|++ |++.+++++..| +|.|
T Consensus       140 ~~ik~ik~~~P~~~vIaGNV~T~e~a~~Li~aG-AD~v  176 (346)
T PRK05096        140 QFVAKAREAWPDKTICAGNVVTGEMVEELILSG-ADIV  176 (346)
T ss_pred             HHHHHHHHhCCCCcEEEecccCHHHHHHHHHcC-CCEE
Confidence            46678888887656777999 999999999999 6865

>PRK11197 lldD L-lactate dehydrogenase; Provisional

Probab=88.11  E-value=1.2  Score=35.73  Aligned_cols=37  Identities=32%  Similarity=0.492  Sum_probs=32.2

Q ss_pred             HHHHHHHHcCCeEEEeCCCCHHHHHHHHHcCCCcEEec
Q 046574           13 SLLLMRKAFKGTFLVAGGYDREDGNKAIAEGRADLVVY   50 (104)
Q Consensus        13 ~~~~ir~~~~~pvi~~Ggi~~~~ae~~l~~g~~DlVa~   50 (104)
                      .++.|++.+++|||+-|=++.++|+.+++.| +|.|.+
T Consensus       236 di~~lr~~~~~pvivKgV~s~~dA~~a~~~G-vd~I~V  272 (381)
T PRK11197        236 DLEWIRDFWDGPMVIKGILDPEDARDAVRFG-ADGIVV  272 (381)
T ss_pred             HHHHHHHhCCCCEEEEecCCHHHHHHHHhCC-CCEEEE
Confidence            3677999999999997777999999999999 798865

>COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism]

Probab=88.09  E-value=2.8  Score=32.07  Aligned_cols=50  Identities=16%  Similarity=0.216  Sum_probs=40.2

Q ss_pred             HHHHHHcC--CeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHh
Q 046574           15 LLMRKAFK--GTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLPRRFE   65 (104)
Q Consensus        15 ~~ir~~~~--~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~   65 (104)
                      ..+.+...  ..+|.=+|| ++++.+.+...| +|.+.+|-.++.++|....++
T Consensus       198 ~~la~~~p~~~~~IsESGI~~~~dv~~l~~~g-a~a~LVG~slM~~~~~~~a~~  250 (254)
T COG0134         198 EKLAPLIPKDVILISESGISTPEDVRRLAKAG-ADAFLVGEALMRADDPEEALR  250 (254)
T ss_pred             HHHHhhCCCCcEEEecCCCCCHHHHHHHHHcC-CCEEEecHHHhcCCCHHHHHH
Confidence            34555554  367777999 899999998888 799999999999999866554

>KOG1436 consensus Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]

Probab=87.96  E-value=0.78  Score=36.65  Aligned_cols=53  Identities=19%  Similarity=0.254  Sum_probs=40.4

Q ss_pred             HHHHHHHHcC--CeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhC-CcHHHHHhh
Q 046574           13 SLLLMRKAFK--GTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLAN-PDLPRRFEF   66 (104)
Q Consensus        13 ~~~~ir~~~~--~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lan-Pdl~~ri~~   66 (104)
                      +.+.+.+.+.  +|+|.+||+ |..+|-+-+..| +.+|-+...|.-+ |-++.||+.
T Consensus       320 ~vR~mY~lt~g~IpiIG~GGV~SG~DA~EkiraG-ASlvQlyTal~yeGp~i~~kIk~  376 (398)
T KOG1436|consen  320 TVRAMYTLTRGKIPIIGCGGVSSGKDAYEKIRAG-ASLVQLYTALVYEGPAIIEKIKR  376 (398)
T ss_pred             HHHHHHHhccCCCceEeecCccccHhHHHHHhcC-chHHHHHHHHhhcCchhHHHHHH
Confidence            3344444443  599999999 999998888899 6899888888765 667777765

>cd00516 PRTase_typeII Phosphoribosyltransferase (PRTase) type II; This family contains two enzymes that play an important role in NAD production by either allowing quinolinic acid (QA) , quinolinate phosphoribosyl transferase (QAPRTase), or nicotinic acid (NA), nicotinate phosphoribosyltransferase (NAPRTase), to be used in the synthesis of NAD

Probab=87.58  E-value=1.2  Score=33.43  Aligned_cols=36  Identities=22%  Similarity=0.382  Sum_probs=31.5

Q ss_pred             CCeEEEeCCCCHHHHHHHHHcCCCcEEecchHHhhCC
Q 046574           22 KGTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANP   58 (104)
Q Consensus        22 ~~pvi~~Ggi~~~~ae~~l~~g~~DlVa~gR~~lanP   58 (104)
                      +..++++||++++.++.....| +|++++|..+.+.|
T Consensus       239 ~~~i~~Sggi~~~~i~~~~~~g-vd~~gvG~~~~~~~  274 (281)
T cd00516         239 RVKIEASGGLDEENIRAYAETG-VDVFGVGTLLHSAP  274 (281)
T ss_pred             ceEEEEeCCCCHHHHHHHHHcC-CCEEEeCcccccCc
Confidence            3479999999999999998888 89999999988873

QAPRTase catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide, an important step in the de novo synthesis of NAD. NAPRTase catalyses a similar reaction leading to NAMN and pyrophosphate, using nicotinic acid an PPRP as substrates, used in the NAD salvage pathway.

>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional

Probab=87.48  E-value=1.2  Score=35.12  Aligned_cols=39  Identities=26%  Similarity=0.366  Sum_probs=30.9

Q ss_pred             hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecc
Q 046574           12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYG   51 (104)
Q Consensus        12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~g   51 (104)
                      +..+.||+.++.+.+.+|.+ |++.|..+++.| +|+|-+|
T Consensus       129 e~I~~ir~~~p~~~vi~g~V~t~e~a~~l~~aG-ad~i~vg  168 (326)
T PRK05458        129 NMIQHIKKHLPETFVIAGNVGTPEAVRELENAG-ADATKVG  168 (326)
T ss_pred             HHHHHHHhhCCCCeEEEEecCCHHHHHHHHHcC-cCEEEEC
Confidence            46778999987555556777 999999999999 7987654

>PRK07107 inosine 5-monophosphate dehydrogenase; Validated

Probab=87.41  E-value=1.4  Score=36.55  Aligned_cols=38  Identities=29%  Similarity=0.330  Sum_probs=31.1

Q ss_pred             hHHHHHHHHcCC-eEEEeCCC-CHHHHHHHHHcCCCcEEec
Q 046574           12 HSLLLMRKAFKG-TFLVAGGY-DREDGNKAIAEGRADLVVY   50 (104)
Q Consensus        12 ~~~~~ir~~~~~-pvi~~Ggi-~~~~ae~~l~~g~~DlVa~   50 (104)
                      +..+.+|+.++. ..|.+|.+ |++.|+.+++.| +|+|-+
T Consensus       272 ~~i~~ir~~~~~~~~V~aGnV~t~e~a~~li~aG-Ad~I~v  311 (502)
T PRK07107        272 RTLDWIREKYGDSVKVGAGNVVDREGFRYLAEAG-ADFVKV  311 (502)
T ss_pred             HHHHHHHHhCCCCceEEeccccCHHHHHHHHHcC-CCEEEE
Confidence            467789998875 56777888 999999999999 698733

>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein

Probab=87.38  E-value=1.4  Score=36.37  Aligned_cols=36  Identities=14%  Similarity=0.217  Sum_probs=29.1

Q ss_pred             hHHHHHHHHc-CCeEEEeCCC-CHHHHHHHHHcCCCcEEe
Q 046574           12 HSLLLMRKAF-KGTFLVAGGY-DREDGNKAIAEGRADLVV   49 (104)
Q Consensus        12 ~~~~~ir~~~-~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa   49 (104)
                      +..+.||+.+ +.|||+ |++ |.+.++++++.| +|.|-
T Consensus       255 ~~i~~i~~~~~~~~vi~-g~~~t~~~~~~l~~~G-~d~i~  292 (475)
T TIGR01303       255 SAIKAVRALDLGVPIVA-GNVVSAEGVRDLLEAG-ANIIK  292 (475)
T ss_pred             HHHHHHHHHCCCCeEEE-eccCCHHHHHHHHHhC-CCEEE
Confidence            4667788877 468888 655 999999999999 79876

This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.

>KOG0538 consensus Glycolate oxidase [Energy production and conversion]

Probab=87.35  E-value=1.1  Score=35.56  Aligned_cols=42  Identities=33%  Similarity=0.327  Sum_probs=34.6

Q ss_pred             HHHHHHHHcC--CeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHh
Q 046574           13 SLLLMRKAFK--GTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFL   55 (104)
Q Consensus        13 ~~~~ir~~~~--~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~l   55 (104)
                      .+..+-+.++  +||+.-||+ +..+.-++|.=| +-.|.+|||++
T Consensus       267 ~L~Evv~aV~~ri~V~lDGGVR~G~DVlKALALG-Ak~VfiGRP~v  311 (363)
T KOG0538|consen  267 ALPEVVKAVEGRIPVFLDGGVRRGTDVLKALALG-AKGVFIGRPIV  311 (363)
T ss_pred             HHHHHHHHhcCceEEEEecCcccchHHHHHHhcc-cceEEecCchh
Confidence            3445556665  499999999 888999999988 79999999987

>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]

Probab=87.16  E-value=1.8  Score=33.31  Aligned_cols=43  Identities=23%  Similarity=0.206  Sum_probs=37.5

Q ss_pred             chHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHh
Q 046574           11 PHSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFL   55 (104)
Q Consensus        11 ~~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~l   55 (104)
                      .+..+.+|++.+.|+...=|| ++++++++.+.  +|.|.+|..++
T Consensus       194 ~~~v~~vr~~~~~Pv~vGFGIs~~e~~~~v~~~--ADGVIVGSAiV  237 (265)
T COG0159         194 KELVKRVRKYTDVPVLVGFGISSPEQAAQVAEA--ADGVIVGSAIV  237 (265)
T ss_pred             HHHHHHHHHhcCCCeEEecCcCCHHHHHHHHHh--CCeEEEcHHHH
Confidence            457788999999999998899 99999999876  89999998865

>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional

Probab=86.95  E-value=1.9  Score=33.30  Aligned_cols=32  Identities=19%  Similarity=0.221  Sum_probs=28.6

Q ss_pred             CeEEEeCCCCHHHHHHHHHcCCCcEEecchHHh
Q 046574           23 GTFLVAGGYDREDGNKAIAEGRADLVVYGRFFL   55 (104)
Q Consensus        23 ~pvi~~Ggi~~~~ae~~l~~g~~DlVa~gR~~l   55 (104)
                      ..+.++|||+++.+++....| +|+|++|...-
T Consensus       232 ~~leaSGGI~~~ni~~yA~tG-vD~Is~galt~  263 (278)
T PRK08385        232 VKIEVSGGITPENIEEYAKLD-VDVISLGALTH  263 (278)
T ss_pred             EEEEEECCCCHHHHHHHHHcC-CCEEEeChhhc
Confidence            469999999999999999988 89999998665

>PRK00042 tpiA triosephosphate isomerase; Provisional

Probab=86.93  E-value=1  Score=34.10  Aligned_cols=54  Identities=15%  Similarity=0.202  Sum_probs=39.3

Q ss_pred             CcchHHHHHHHHcC---------CeEEEeCCCCHHHHHHHHHcCCCcEEecchHHhhCCcHHH
Q 046574            9 ECPHSLLLMRKAFK---------GTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANPDLPR   62 (104)
Q Consensus         9 ~~~~~~~~ir~~~~---------~pvi~~Ggi~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~   62 (104)
                      +++...+.||+.+.         .+|+..|+++++.+.+++..-.+|-+.+|+.-+.=.+|..
T Consensus       181 ~~~~v~~~Ir~~l~~~~~~~~~~~~IlYGGSV~~~N~~~l~~~~~vDG~LVG~Asl~~~~f~~  243 (250)
T PRK00042        181 QAQEVHAFIRAVLAELYGEVAEKVRILYGGSVKPDNAAELMAQPDIDGALVGGASLKAEDFLA  243 (250)
T ss_pred             HHHHHHHHHHHHHHHhcccccCCceEEEcCCCCHHHHHHHhcCCCCCEEEEeeeeechHHHHH
Confidence            33444455665432         4788888889999999999888999999999883334433

>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2

Probab=86.69  E-value=1.4  Score=31.42  Aligned_cols=31  Identities=19%  Similarity=0.277  Sum_probs=26.7

Q ss_pred             CeEEEeCCCCHHHHHHHHHcCCCcEEecchHH
Q 046574           23 GTFLVAGGYDREDGNKAIAEGRADLVVYGRFF   54 (104)
Q Consensus        23 ~pvi~~Ggi~~~~ae~~l~~g~~DlVa~gR~~   54 (104)
                      ..+.++|||+++.+.+....| +|.+++|...
T Consensus       128 v~ie~SGGI~~~ni~~ya~~g-vD~isvg~~~  158 (169)
T PF01729_consen  128 VKIEASGGITLENIAEYAKTG-VDVISVGSLT  158 (169)
T ss_dssp             SEEEEESSSSTTTHHHHHHTT--SEEEECHHH
T ss_pred             EEEEEECCCCHHHHHHHHhcC-CCEEEcChhh
Confidence            578899999999999999988 8999999753

4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....

>cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily

Probab=86.65  E-value=1.7  Score=32.28  Aligned_cols=39  Identities=18%  Similarity=0.181  Sum_probs=34.1

Q ss_pred             hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEec
Q 046574           12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVY   50 (104)
Q Consensus        12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~   50 (104)
                      +..+.+++..+.||++.+++ ++.++.++++++.+|+|.+
T Consensus       170 ~~~~~l~~~~~ipia~dE~~~~~~~~~~~i~~~~~d~v~~  209 (265)
T cd03315         170 EGRAALARATDTPIMADESAFTPHDAFRELALGAADAVNI  209 (265)
T ss_pred             HHHHHHHhhCCCCEEECCCCCCHHHHHHHHHhCCCCEEEE
Confidence            35567888889999999988 9999999999999999876

Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions.

>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional

Probab=86.56  E-value=1.7  Score=35.94  Aligned_cols=37  Identities=14%  Similarity=0.288  Sum_probs=29.3

Q ss_pred             hHHHHHHHHcCC-eEEEeCCC-CHHHHHHHHHcCCCcEEec
Q 046574           12 HSLLLMRKAFKG-TFLVAGGY-DREDGNKAIAEGRADLVVY   50 (104)
Q Consensus        12 ~~~~~ir~~~~~-pvi~~Ggi-~~~~ae~~l~~g~~DlVa~   50 (104)
                      +..+.||+.+.. +||+ |++ |++.|+.+++.| +|+|-+
T Consensus       271 ~~i~~ik~~~~~~~v~a-G~V~t~~~a~~~~~aG-ad~I~v  309 (495)
T PTZ00314        271 DMIKKLKSNYPHVDIIA-GNVVTADQAKNLIDAG-ADGLRI  309 (495)
T ss_pred             HHHHHHHhhCCCceEEE-CCcCCHHHHHHHHHcC-CCEEEE
Confidence            467788888754 5555 777 999999999999 799853

>PLN02561 triosephosphate isomerase

Probab=86.51  E-value=1.6  Score=33.16  Aligned_cols=42  Identities=14%  Similarity=0.190  Sum_probs=35.6

Q ss_pred             CeEEEeCCCCHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHh
Q 046574           23 GTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANPDLPRRFE   65 (104)
Q Consensus        23 ~pvi~~Ggi~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~   65 (104)
                      ++++..|+++++.+.+++....+|-+.+|+.-|. |+|..-+.
T Consensus       205 i~ILYGGSV~~~N~~~l~~~~~iDG~LVG~ASL~-~~F~~ii~  246 (253)
T PLN02561        205 TRIIYGGSVTGANCKELAAQPDVDGFLVGGASLK-PEFIDIIK  246 (253)
T ss_pred             ceEEEeCCcCHHHHHHHhcCCCCCeEEEehHhhH-HHHHHHHH
Confidence            4788888889999999999888999999999997 67766543

>PRK06801 hypothetical protein; Provisional

Probab=86.50  E-value=2.2  Score=32.94  Aligned_cols=43  Identities=16%  Similarity=0.166  Sum_probs=36.8

Q ss_pred             hHHHHHHHHcCCeEEEeCC--CCHHHHHHHHHcCCCcEEecchHHh
Q 046574           12 HSLLLMRKAFKGTFLVAGG--YDREDGNKAIAEGRADLVVYGRFFL   55 (104)
Q Consensus        12 ~~~~~ir~~~~~pvi~~Gg--i~~~~ae~~l~~g~~DlVa~gR~~l   55 (104)
                      +.++.+++.++.|+.+-||  ++.+++.++++.| ++-|.+++.+.
T Consensus       193 e~l~~i~~~~~~PLVlHGGSgi~~e~~~~~i~~G-i~KINv~T~~~  237 (286)
T PRK06801        193 ARLAAIHQQTGLPLVLHGGSGISDADFRRAIELG-IHKINFYTGMS  237 (286)
T ss_pred             HHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHcC-CcEEEehhHHH
Confidence            5667788888899999999  7999999999999 78999887664

>PLN02535 glycolate oxidase

Probab=86.46  E-value=1.6  Score=34.89  Aligned_cols=39  Identities=23%  Similarity=0.322  Sum_probs=33.0

Q ss_pred             hHHHHHHHHcCCeEEEeCCCCHHHHHHHHHcCCCcEEecc
Q 046574           12 HSLLLMRKAFKGTFLVAGGYDREDGNKAIAEGRADLVVYG   51 (104)
Q Consensus        12 ~~~~~ir~~~~~pvi~~Ggi~~~~ae~~l~~g~~DlVa~g   51 (104)
                      +.++.+|+.+++|||+-|=+++++|+.+++.| +|.|.++
T Consensus       213 ~~i~~lr~~~~~PvivKgV~~~~dA~~a~~~G-vD~I~vs  251 (364)
T PLN02535        213 KDIEWLRSITNLPILIKGVLTREDAIKAVEVG-VAGIIVS  251 (364)
T ss_pred             HHHHHHHhccCCCEEEecCCCHHHHHHHHhcC-CCEEEEe
Confidence            35677999999999997767999999999988 7998773

>PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane

Probab=86.40  E-value=0.62  Score=35.51  Aligned_cols=47  Identities=23%  Similarity=0.304  Sum_probs=38.4

Q ss_pred             hHHHHHHHHcCCeEEEeCCCCHHHHHHHHHcCCCcEEecchHHhhCCcH
Q 046574           12 HSLLLMRKAFKGTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANPDL   60 (104)
Q Consensus        12 ~~~~~ir~~~~~pvi~~Ggi~~~~ae~~l~~g~~DlVa~gR~~lanPdl   60 (104)
                      +.++.+|+..+.||++.+|+|++.+.+.++  .+|.+.+|..|=.|=.|
T Consensus       190 ~~l~~vr~~~~~PVlvGSGvt~~Ni~~~l~--~ADG~IVGS~~K~~G~~  236 (254)
T PF03437_consen  190 EKLKRVREAVPVPVLVGSGVTPENIAEYLS--YADGAIVGSYFKKDGKW  236 (254)
T ss_pred             HHHHHHHhcCCCCEEEecCCCHHHHHHHHH--hCCEEEEeeeeeeCCEe
Confidence            456789999999999999999999999996  37999999877644433

It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions.

>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed

Probab=86.40  E-value=1.7  Score=35.62  Aligned_cols=39  Identities=18%  Similarity=0.246  Sum_probs=30.7

Q ss_pred             hHHHHHHHHc-CCeEEEeCCCCHHHHHHHHHcCCCcEEecc
Q 046574           12 HSLLLMRKAF-KGTFLVAGGYDREDGNKAIAEGRADLVVYG   51 (104)
Q Consensus        12 ~~~~~ir~~~-~~pvi~~Ggi~~~~ae~~l~~g~~DlVa~g   51 (104)
                      +..+.|++.+ +.|||+.+..|+++|..+++.| +|+|.+|
T Consensus       258 ~~i~~i~~~~p~~~vi~g~v~t~e~a~~l~~aG-ad~i~vg  297 (486)
T PRK05567        258 DRVREIKAKYPDVQIIAGNVATAEAARALIEAG-ADAVKVG  297 (486)
T ss_pred             HHHHHHHhhCCCCCEEEeccCCHHHHHHHHHcC-CCEEEEC
Confidence            4667788888 6688884444999999999998 7998653

>PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase

Probab=86.35  E-value=1.7  Score=34.82  Aligned_cols=37  Identities=27%  Similarity=0.301  Sum_probs=32.4

Q ss_pred             HHHHHHHHcCCeEEEeCCCCHHHHHHHHHcCCCcEEec
Q 046574           13 SLLLMRKAFKGTFLVAGGYDREDGNKAIAEGRADLVVY   50 (104)
Q Consensus        13 ~~~~ir~~~~~pvi~~Ggi~~~~ae~~l~~g~~DlVa~   50 (104)
                      .++.+|+.|++|||+=|-.++++|+.+++.| +|.|.+
T Consensus       215 di~wlr~~~~~PiivKgV~~~~dA~~a~~~G-vd~I~V  251 (367)
T PLN02493        215 DVQWLQTITKLPILVKGVLTGEDARIAIQAG-AAGIIV  251 (367)
T ss_pred             HHHHHHhccCCCEEeecCCCHHHHHHHHHcC-CCEEEE
Confidence            5678999999999987766999999999999 788877

>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional

Probab=86.23  E-value=2.3  Score=32.87  Aligned_cols=32  Identities=22%  Similarity=0.243  Sum_probs=28.4

Q ss_pred             CeEEEeCCCCHHHHHHHHHcCCCcEEecchHHh
Q 046574           23 GTFLVAGGYDREDGNKAIAEGRADLVVYGRFFL   55 (104)
Q Consensus        23 ~pvi~~Ggi~~~~ae~~l~~g~~DlVa~gR~~l   55 (104)
                      .++.++|||+++.+++....| +|+|++|...-
T Consensus       239 ~~leaSGGI~~~ni~~yA~tG-VD~Is~Galth  270 (281)
T PRK06106        239 AITEASGRITPETAPAIAASG-VDLISVGWLTH  270 (281)
T ss_pred             ceEEEECCCCHHHHHHHHhcC-CCEEEeChhhc
Confidence            489999999999999999888 89999997554

>cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily

Probab=86.21  E-value=1.6  Score=33.68  Aligned_cols=39  Identities=15%  Similarity=0.172  Sum_probs=34.0

Q ss_pred             hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEec
Q 046574           12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVY   50 (104)
Q Consensus        12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~   50 (104)
                      .....+++..+.||++..++ ++++++++++++.+|+|.+
T Consensus       230 ~~~~~l~~~~~ipi~~dE~~~~~~~~~~~i~~~~~d~v~~  269 (357)
T cd03316         230 EGLARLRQATSVPIAAGENLYTRWEFRDLLEAGAVDIIQP  269 (357)
T ss_pred             HHHHHHHHhCCCCEEeccccccHHHHHHHHHhCCCCEEec
Confidence            35567888888999999988 9999999999999999865

Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD).

>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase

Probab=85.55  E-value=2.3  Score=33.17  Aligned_cols=37  Identities=22%  Similarity=0.328  Sum_probs=29.1

Q ss_pred             hHHHHHHHHcC-CeEEEeCCC-CHHHHHHHHHcCCCcEEec
Q 046574           12 HSLLLMRKAFK-GTFLVAGGY-DREDGNKAIAEGRADLVVY   50 (104)
Q Consensus        12 ~~~~~ir~~~~-~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~   50 (104)
                      +..+.+|+... .+||+ |.+ +++.|+.+++.| +|+|.+
T Consensus       124 ~~i~~ik~~~p~v~Vi~-G~v~t~~~A~~l~~aG-aD~I~v  162 (325)
T cd00381         124 EMIKFIKKKYPNVDVIA-GNVVTAEAARDLIDAG-ADGVKV  162 (325)
T ss_pred             HHHHHHHHHCCCceEEE-CCCCCHHHHHHHHhcC-CCEEEE
Confidence            45667777764 56766 777 999999999998 799875

IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.

>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional

Probab=85.20  E-value=2.3  Score=31.45  Aligned_cols=51  Identities=24%  Similarity=0.288  Sum_probs=38.4

Q ss_pred             hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHhh
Q 046574           12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEF   66 (104)
Q Consensus        12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~~   66 (104)
                      +..+.+++.++..+|.+|.+ +.++++.+++.| +||+..=   -.||++.+..++
T Consensus        55 ~~I~~l~~~~p~~~IGAGTVl~~~~a~~a~~aG-A~FivsP---~~~~~vi~~a~~  106 (212)
T PRK05718         55 EAIRLIAKEVPEALIGAGTVLNPEQLAQAIEAG-AQFIVSP---GLTPPLLKAAQE  106 (212)
T ss_pred             HHHHHHHHHCCCCEEEEeeccCHHHHHHHHHcC-CCEEECC---CCCHHHHHHHHH
Confidence            45677888887788999999 999999999999 6876541   355666665544

>PRK06843 inosine 5-monophosphate dehydrogenase; Validated

Probab=85.10  E-value=1.8  Score=35.10  Aligned_cols=39  Identities=23%  Similarity=0.339  Sum_probs=30.0

Q ss_pred             hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecc
Q 046574           12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYG   51 (104)
Q Consensus        12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~g   51 (104)
                      +..+.+|+.+....+..|++ |++.|+.+++.| +|.|.+|
T Consensus       183 ~~v~~ik~~~p~~~vi~g~V~T~e~a~~l~~aG-aD~I~vG  222 (404)
T PRK06843        183 ELVKKIKTKYPNLDLIAGNIVTKEAALDLISVG-ADCLKVG  222 (404)
T ss_pred             HHHHHHHhhCCCCcEEEEecCCHHHHHHHHHcC-CCEEEEC
Confidence            56778888885433445666 999999999999 7998655

>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]

Probab=85.06  E-value=2.2  Score=31.83  Aligned_cols=56  Identities=25%  Similarity=0.376  Sum_probs=38.8

Q ss_pred             hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHhh-CCCCC
Q 046574           12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEF-NAPLN   71 (104)
Q Consensus        12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~~-g~~l~   71 (104)
                      +..+.+++.+..-+|.+|-+ ++++++++++.| ++||.-   =-.||++++.... |.++.
T Consensus        53 e~I~~l~~~~p~~lIGAGTVL~~~q~~~a~~aG-a~fiVs---P~~~~ev~~~a~~~~ip~~  110 (211)
T COG0800          53 EAIRALAKEFPEALIGAGTVLNPEQARQAIAAG-AQFIVS---PGLNPEVAKAANRYGIPYI  110 (211)
T ss_pred             HHHHHHHHhCcccEEccccccCHHHHHHHHHcC-CCEEEC---CCCCHHHHHHHHhCCCccc
Confidence            56677788888789999999 999999999999 576532   0145555554433 44443

>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional

Probab=85.02  E-value=1.7  Score=33.73  Aligned_cols=32  Identities=16%  Similarity=0.223  Sum_probs=28.5

Q ss_pred             CeEEEeCCCCHHHHHHHHHcCCCcEEecchHHh
Q 046574           23 GTFLVAGGYDREDGNKAIAEGRADLVVYGRFFL   55 (104)
Q Consensus        23 ~pvi~~Ggi~~~~ae~~l~~g~~DlVa~gR~~l   55 (104)
                      ..+.++|||+++.+.+....| +|+|++|...-
T Consensus       247 v~ieaSGGI~~~ni~~yA~tG-vD~Is~galt~  278 (289)
T PRK07896        247 VLLESSGGLTLDTAAAYAETG-VDYLAVGALTH  278 (289)
T ss_pred             EEEEEECCCCHHHHHHHHhcC-CCEEEeChhhc
Confidence            479999999999999999888 89999998665

>COG1058 CinA Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only]

Probab=84.68  E-value=0.51  Score=36.08  Aligned_cols=45  Identities=18%  Similarity=0.234  Sum_probs=31.8

Q ss_pred             HHHHHHcCCeEEEeCCC--CHHHH-HHHHHcCCCcEEecchHHhhCCcHHHHHhh
Q 046574           15 LLMRKAFKGTFLVAGGY--DREDG-NKAIAEGRADLVVYGRFFLANPDLPRRFEF   66 (104)
Q Consensus        15 ~~ir~~~~~pvi~~Ggi--~~~~a-e~~l~~g~~DlVa~gR~~lanPdl~~ri~~   66 (104)
                      ....+. ...||++||+  |.++. .+++.      =++||++..||++.+.+..
T Consensus        55 ~~a~~r-~D~vI~tGGLGPT~DDiT~e~vA------ka~g~~lv~~~~al~~i~~  102 (255)
T COG1058          55 REASER-ADVVITTGGLGPTHDDLTAEAVA------KALGRPLVLDEEALAMIEE  102 (255)
T ss_pred             HHHHhC-CCEEEECCCcCCCccHhHHHHHH------HHhCCCcccCHHHHHHHHH
Confidence            333333 3589999999  77765 23332      2588999999999988765

>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional

Probab=84.15  E-value=2.9  Score=32.32  Aligned_cols=34  Identities=12%  Similarity=0.168  Sum_probs=29.1

Q ss_pred             eEEEeCCCCHHHHHHHHHcCCCcEEecchHHhhCC
Q 046574           24 TFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANP   58 (104)
Q Consensus        24 pvi~~Ggi~~~~ae~~l~~g~~DlVa~gR~~lanP   58 (104)
                      .+.++|||+++.+.+....| +|+|+.|...-+=|
T Consensus       239 ~leaSGgI~~~ni~~yA~tG-VD~Is~galths~~  272 (281)
T PRK06543        239 IVEASGNVNLNTVGAIASTG-VDVISVGALTHSVR  272 (281)
T ss_pred             EEEEECCCCHHHHHHHHhcC-CCEEEeCccccCCc
Confidence            79999999999999999888 89999997654433

>cd04725 OMP_decarboxylase_like Orotidine 5'-phosphate decarboxylase (ODCase) is a dimeric enzyme that decarboxylates orotidine 5'-monophosphate (OMP) to form uridine 5'-phosphate (UMP), an essential step in the pyrimidine biosynthetic pathway

Probab=84.12  E-value=2  Score=31.42  Aligned_cols=48  Identities=25%  Similarity=0.360  Sum_probs=36.4

Q ss_pred             HHHHHHc-CCeEEEeCCCCHH----------HHHHHHHcCCCcEEecchHHhhCCcHHHH
Q 046574           15 LLMRKAF-KGTFLVAGGYDRE----------DGNKAIAEGRADLVVYGRFFLANPDLPRR   63 (104)
Q Consensus        15 ~~ir~~~-~~pvi~~Ggi~~~----------~ae~~l~~g~~DlVa~gR~~lanPdl~~r   63 (104)
                      ..+++.. ...++++.||.++          ..++++..| +|++.+||+.+..++-...
T Consensus       154 ~~i~~~~~~~~~~ltPGI~~~~~~~dq~r~~~~~~a~~~g-~~~ivvGR~I~~a~~p~~~  212 (216)
T cd04725         154 EALRRALGPDFLILTPGIGAQGSGDDQKRGGTPEDAIRAG-ADYIVVGRPITQAADPVAA  212 (216)
T ss_pred             HHHHHhhCCCCeEEcCCcCCCCCccccccccCHHHHHHcC-CcEEEEChhhccCCCHHHH
Confidence            3444444 3457999999655          788899888 8999999999999885443

In mammals, UMP synthase contains two domains: the orotate phosphoribosyltransferase (OPRTase) domain that catalyzes the transfer of phosphoribosyl 5'-pyrophosphate (PRPP) to orotate to form OMP, and the orotidine-5'-phosphate decarboxylase (ODCase) domain that decarboxylates OMP to form UMP.

>COG1908 FrhD Coenzyme F420-reducing hydrogenase, delta subunit [Energy production and conversion]

Probab=83.59  E-value=1.4  Score=30.50  Aligned_cols=27  Identities=30%  Similarity=0.314  Sum_probs=24.4

Q ss_pred             eEEEeCCCCHHHHHHHHHcCCCcEEecc
Q 046574           24 TFLVAGGYDREDGNKAIAEGRADLVVYG   51 (104)
Q Consensus        24 pvi~~Ggi~~~~ae~~l~~g~~DlVa~g   51 (104)
                      +|+++|.++++-+.+++..| +|.|.++
T Consensus        34 rv~CsGrvn~~fvl~Al~~G-aDGV~v~   60 (132)
T COG1908          34 RVMCSGRVNPEFVLKALRKG-ADGVLVA   60 (132)
T ss_pred             EeeccCccCHHHHHHHHHcC-CCeEEEe
Confidence            79999999999999999998 7988774

>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional

Probab=83.21  E-value=3.3  Score=30.52  Aligned_cols=55  Identities=20%  Similarity=0.271  Sum_probs=39.1

Q ss_pred             hHHHHHHHHcC---CeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHhh-CCCC
Q 046574           12 HSLLLMRKAFK---GTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEF-NAPL   70 (104)
Q Consensus        12 ~~~~~ir~~~~---~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~~-g~~l   70 (104)
                      +..+.+++.+.   ..+|.+|.+ |+++++++++.| ++|+.  -| -.||++.+..++ |.++
T Consensus        53 ~~i~~l~~~~~~~p~~~vGaGTV~~~~~~~~a~~aG-A~Fiv--sP-~~~~~v~~~~~~~~i~~  112 (213)
T PRK06552         53 EVIKELVELYKDDPEVLIGAGTVLDAVTARLAILAG-AQFIV--SP-SFNRETAKICNLYQIPY  112 (213)
T ss_pred             HHHHHHHHHcCCCCCeEEeeeeCCCHHHHHHHHHcC-CCEEE--CC-CCCHHHHHHHHHcCCCE
Confidence            45667777774   358899999 999999999999 68766  22 456777665544 4443

>PRK14905 triosephosphate isomerase/PTS system glucose/sucrose-specific transporter subunit IIB; Provisional

Probab=83.17  E-value=2.8  Score=33.41  Aligned_cols=38  Identities=21%  Similarity=0.202  Sum_probs=32.6

Q ss_pred             CeEEEeCCCCHHHHHHHHHcCCCcEEecchHHhhCCcH
Q 046574           23 GTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANPDL   60 (104)
Q Consensus        23 ~pvi~~Ggi~~~~ae~~l~~g~~DlVa~gR~~lanPdl   60 (104)
                      ++|+..|+++++.+.+++....+|-+.+|+.-+.-.+|
T Consensus       214 v~ILYGGSV~~~N~~~l~~~~~iDG~LVG~asl~~~~f  251 (355)
T PRK14905        214 IPVLYGGSVNLENANELIMKPHIDGLFIGRSAWDAQCF  251 (355)
T ss_pred             eeEEEeCcCCHHHHHHHhcCCCCCEEEechhhccHHHH
Confidence            47888888899999999999889999999999944445

>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase

Probab=83.13  E-value=2.2  Score=34.66  Aligned_cols=38  Identities=24%  Similarity=0.373  Sum_probs=29.8

Q ss_pred             hHHHHHHHHc-CCeEEEeCCC-CHHHHHHHHHcCCCcEEecc
Q 046574           12 HSLLLMRKAF-KGTFLVAGGY-DREDGNKAIAEGRADLVVYG   51 (104)
Q Consensus        12 ~~~~~ir~~~-~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~g   51 (104)
                      +..+.||+.+ +.|||+ |++ |++.|+.+++.| +|+|-+|
T Consensus       254 ~~i~~i~~~~~~~~vi~-G~v~t~~~a~~l~~aG-ad~i~vg  293 (450)
T TIGR01302       254 DSIKEIKKTYPDLDIIA-GNVATAEQAKALIDAG-ADGLRVG  293 (450)
T ss_pred             HHHHHHHHhCCCCCEEE-EeCCCHHHHHHHHHhC-CCEEEEC
Confidence            4667788886 567877 555 999999999999 7998533

This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.

>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional

Probab=82.84  E-value=3.7  Score=31.96  Aligned_cols=32  Identities=16%  Similarity=0.106  Sum_probs=28.3

Q ss_pred             CeEEEeCCCCHHHHHHHHHcCCCcEEecchHHh
Q 046574           23 GTFLVAGGYDREDGNKAIAEGRADLVVYGRFFL   55 (104)
Q Consensus        23 ~pvi~~Ggi~~~~ae~~l~~g~~DlVa~gR~~l   55 (104)
                      ..+.++|||+++.+.+....| +|+|++|...-
T Consensus       242 ~~leaSGGI~~~ni~~yA~tG-VD~Is~galth  273 (290)
T PRK06559        242 SRIECSGNIDMTTISRFRGLA-IDYVSSGSLTH  273 (290)
T ss_pred             eEEEEECCCCHHHHHHHHhcC-CCEEEeCcccc
Confidence            478999999999999999888 89999997654

>PRK07188 nicotinate phosphoribosyltransferase; Provisional

Probab=82.64  E-value=4.1  Score=32.47  Aligned_cols=47  Identities=23%  Similarity=0.335  Sum_probs=37.3

Q ss_pred             chHHHHHHHHcC------CeEEEeCCCCHHHHHHHHHcCC-CcEEecchHHhhC
Q 046574           11 PHSLLLMRKAFK------GTFLVAGGYDREDGNKAIAEGR-ADLVVYGRFFLAN   57 (104)
Q Consensus        11 ~~~~~~ir~~~~------~pvi~~Ggi~~~~ae~~l~~g~-~DlVa~gR~~lan   57 (104)
                      +...+.+|+.++      +.++++|||+++.+++..++|. +|..++|..++..
T Consensus       263 ~~l~~~vr~~Ld~~g~~~vkI~aSgGine~~I~~~~~~g~piD~~GVGt~l~~~  316 (352)
T PRK07188        263 PELIKALRKALDENGGKHVKIIVSSGFDAKKIREFEAQNVPVDIYGVGSSLLKI  316 (352)
T ss_pred             HHHHHHHHHHHhhCCCCCcEEEEeCCCCHHHHHHHHHcCCCccEEecCcccccC
Confidence            345566666552      3599999999999999988875 8999999988874

>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain

Probab=82.48  E-value=3.5  Score=32.73  Aligned_cols=38  Identities=26%  Similarity=0.246  Sum_probs=32.1

Q ss_pred             hHHHHHHHHcCCeEEEeCCCCHHHHHHHHHcCCCcEEec
Q 046574           12 HSLLLMRKAFKGTFLVAGGYDREDGNKAIAEGRADLVVY   50 (104)
Q Consensus        12 ~~~~~ir~~~~~pvi~~Ggi~~~~ae~~l~~g~~DlVa~   50 (104)
                      +.++.+++.+++||++=|-.+++.|+.+++.| +|.|.+
T Consensus       211 ~~l~~lr~~~~~PvivKgv~~~~dA~~a~~~G-~d~I~v  248 (351)
T cd04737         211 ADIEFIAKISGLPVIVKGIQSPEDADVAINAG-ADGIWV  248 (351)
T ss_pred             HHHHHHHHHhCCcEEEecCCCHHHHHHHHHcC-CCEEEE
Confidence            35567999999999988645999999999988 799877

LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).

>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional

Probab=82.35  E-value=3.9  Score=31.92  Aligned_cols=35  Identities=17%  Similarity=0.214  Sum_probs=29.6

Q ss_pred             CeEEEeCCCCHHHHHHHHHcCCCcEEecchHHhhCC
Q 046574           23 GTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANP   58 (104)
Q Consensus        23 ~pvi~~Ggi~~~~ae~~l~~g~~DlVa~gR~~lanP   58 (104)
                      ..+.++|||+++.+.+....| +|+|++|...-+-|
T Consensus       250 ~~lEaSGGIt~~ni~~yA~tG-VD~IS~galthsa~  284 (294)
T PRK06978        250 AVLEVSGGVNFDTVRAFAETG-VDRISIGALTKDVR  284 (294)
T ss_pred             eEEEEECCCCHHHHHHHHhcC-CCEEEeCccccCCc
Confidence            478899999999999999888 89999997655444

>TIGR01334 modD putative molybdenum utilization protein ModD

Probab=82.18  E-value=1.8  Score=33.37  Aligned_cols=35  Identities=31%  Similarity=0.457  Sum_probs=29.1

Q ss_pred             CeEEEeCCCCHHHHHHHHHcCCCcEEecchHHhhCC
Q 046574           23 GTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANP   58 (104)
Q Consensus        23 ~pvi~~Ggi~~~~ae~~l~~g~~DlVa~gR~~lanP   58 (104)
                      ..|.++|||+++.+.+....| +|+|+.|-+.-+-|
T Consensus       236 ~~leasGGI~~~ni~~ya~~G-vD~is~gal~~a~~  270 (277)
T TIGR01334       236 PTLAAAGGINPENIADYIEAG-IDLFITSAPYYAAP  270 (277)
T ss_pred             EEEEEECCCCHHHHHHHHhcC-CCEEEeCcceecCc
Confidence            378999999999999999988 89999986654433

The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.

>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes

Probab=82.15  E-value=3.7  Score=31.39  Aligned_cols=38  Identities=32%  Similarity=0.524  Sum_probs=32.2

Q ss_pred             hHHHHHHHHcCCeEEEeCCCCHHHHHHHHHcCCCcEEec
Q 046574           12 HSLLLMRKAFKGTFLVAGGYDREDGNKAIAEGRADLVVY   50 (104)
Q Consensus        12 ~~~~~ir~~~~~pvi~~Ggi~~~~ae~~l~~g~~DlVa~   50 (104)
                      +..+.+++.+++||++-+-.+++.|+.+.+.| +|.|.+
T Consensus       162 ~~i~~l~~~~~~pvivK~v~s~~~a~~a~~~G-~d~I~v  199 (299)
T cd02809         162 DDLAWLRSQWKGPLILKGILTPEDALRAVDAG-ADGIVV  199 (299)
T ss_pred             HHHHHHHHhcCCCEEEeecCCHHHHHHHHHCC-CCEEEE
Confidence            46778899989999988766999999999988 788866

This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.

>PF01070 FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR000262 A number of oxidoreductases that act on alpha-hydroxy acids and which are FMN-containing flavoproteins have been shown [, , ] to be structurally related

Probab=81.77  E-value=2.9  Score=33.13  Aligned_cols=39  Identities=26%  Similarity=0.392  Sum_probs=32.6

Q ss_pred             hHHHHHHHHcCCeEEEeCCCCHHHHHHHHHcCCCcEEecc
Q 046574           12 HSLLLMRKAFKGTFLVAGGYDREDGNKAIAEGRADLVVYG   51 (104)
Q Consensus        12 ~~~~~ir~~~~~pvi~~Ggi~~~~ae~~l~~g~~DlVa~g   51 (104)
                      +..+.+++.+++|||+=|=+++++|..+++.| +|.|-++
T Consensus       215 ~~i~~~~~~~~~pvivKgv~~~~da~~~~~~G-~~~i~vs  253 (356)
T PF01070_consen  215 DDIEWIRKQWKLPVIVKGVLSPEDAKRAVDAG-VDGIDVS  253 (356)
T ss_dssp             HHHHHHHHHCSSEEEEEEE-SHHHHHHHHHTT--SEEEEE
T ss_pred             HHHHHHhcccCCceEEEecccHHHHHHHHhcC-CCEEEec
Confidence            35778999999999999888999999999999 7887774

These enzymes are: Lactate dehydrogenase (1.1.2.3 from EC), which consists of a dehydrogenase domain and a haem-binding domain called cytochrome b2 and which catalyses the conversion of lactate into pyruvate. Glycolate oxidase (1.1.3.15 from EC) ((S)-2-hydroxy-acid oxidase), a peroxisomal enzyme that catalyses the conversion of glycolate and oxygen to glyoxylate and hydrogen peroxide. Long chain alpha-hydroxy acid oxidase from rat (1.1.3.15 from EC), a peroxisomal enzyme. Lactate 2-monooxygenase (1.13.12.4 from EC) (lactate oxidase) from Mycobacterium smegmatis, which catalyses the conversion of lactate and oxygen to acetate, carbon dioxide and water. (S)-mandelate dehydrogenase from Pseudomonas putida (gene mdlB), which catalyses the reduction of (S)-mandelate to benzoylformate. The first step in the reaction mechanism of these enzymes is the abstraction of the proton from the alpha-carbon of the substrate producing a carbanion which can subsequently attach to the N5 atom of FMN. A conserved histidine has been shown [] to be involved in the removal of the proton. The region around this active site residue is highly conserved and contains an arginine residue which is involved in substrate binding.; GO: 0016491 oxidoreductase activity; PDB: 1VCG_C 1VCF_A 1P0N_B 1P0K_A 2A85_A 2A7P_A 3GIY_A 2A7N_A 3DH7_A 2RDU_A ....

>KOG1606 consensus Stationary phase-induced protein, SOR/SNZ family [Coenzyme transport and metabolism]

Probab=81.76  E-value=2.1  Score=32.60  Aligned_cols=41  Identities=24%  Similarity=0.253  Sum_probs=35.2

Q ss_pred             EEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHhh
Q 046574           25 FLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEF   66 (104)
Q Consensus        25 vi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~~   66 (104)
                      =+++||+ ||.+|.-.++-| ||-|.+|......+|=+.+.+.
T Consensus       212 ~FAaGGvaTPADAALmMQLG-CdGVFVGSgiFks~dP~k~a~a  253 (296)
T KOG1606|consen  212 NFAAGGVATPADAALMMQLG-CDGVFVGSGIFKSGDPVKRARA  253 (296)
T ss_pred             EecccCcCChhHHHHHHHcC-CCeEEeccccccCCCHHHHHHH
Confidence            4678999 999998888888 9999999999998887777654

>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase

Probab=81.71  E-value=2.4  Score=33.80  Aligned_cols=37  Identities=27%  Similarity=0.355  Sum_probs=28.9

Q ss_pred             hHHHHHHHHcC-CeEEEeCCC-CHHHHHHHHHcCCCcEEec
Q 046574           12 HSLLLMRKAFK-GTFLVAGGY-DREDGNKAIAEGRADLVVY   50 (104)
Q Consensus        12 ~~~~~ir~~~~-~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~   50 (104)
                      +..+.+|+.++ .+|| +|++ |++.++.+++.| +|.|=+
T Consensus       138 ~~ik~ik~~~~~~~vi-aGNV~T~e~a~~L~~aG-ad~vkV  176 (352)
T PF00478_consen  138 DMIKKIKKKFPDVPVI-AGNVVTYEGAKDLIDAG-ADAVKV  176 (352)
T ss_dssp             HHHHHHHHHSTTSEEE-EEEE-SHHHHHHHHHTT--SEEEE
T ss_pred             HHHHHHHHhCCCceEE-ecccCCHHHHHHHHHcC-CCEEEE
Confidence            46678888887 5666 5788 999999999999 797544

These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....

>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides

Probab=81.42  E-value=3.8  Score=31.22  Aligned_cols=39  Identities=13%  Similarity=0.136  Sum_probs=33.8

Q ss_pred             hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEec
Q 046574           12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVY   50 (104)
Q Consensus        12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~   50 (104)
                      +....+++..++||++.+.+ +++++.++++++.+|.|.+
T Consensus       218 ~~~~~L~~~~~ipIa~~E~~~~~~~~~~~~~~~~~d~v~~  257 (316)
T cd03319         218 DGLAYLRDKSPLPIMADESCFSAADAARLAGGGAYDGINI  257 (316)
T ss_pred             HHHHHHHhcCCCCEEEeCCCCCHHHHHHHHhcCCCCEEEE
Confidence            35567888888999999988 9999999999999998865

The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.

>cd00945 Aldolase_Class_I Class I aldolases

Probab=81.33  E-value=4.8  Score=27.65  Aligned_cols=39  Identities=33%  Similarity=0.376  Sum_probs=30.0

Q ss_pred             hHHHHHHHHc--CCeEEEeCCC-CHHHHHHHHHcCCCcEEecc
Q 046574           12 HSLLLMRKAF--KGTFLVAGGY-DREDGNKAIAEGRADLVVYG   51 (104)
Q Consensus        12 ~~~~~ir~~~--~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~g   51 (104)
                      .....+++..  +.++++.||+ +++.+.+++..| ++.+.+|
T Consensus       160 ~~~~~i~~~~~~~~~v~~~gg~~~~~~~~~~~~~G-a~g~~~g  201 (201)
T cd00945         160 EDVKLMKEAVGGRVGVKAAGGIKTLEDALAAIEAG-ADGIGTS  201 (201)
T ss_pred             HHHHHHHHhcccCCcEEEECCCCCHHHHHHHHHhc-cceeecC
Confidence            3445677776  4589999999 699999999888 7877764

The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.

>PRK15492 triosephosphate isomerase; Provisional

Probab=81.21  E-value=2.9  Score=31.93  Aligned_cols=40  Identities=15%  Similarity=0.168  Sum_probs=32.6

Q ss_pred             CeEEEeCCCCHHHHHHHHHcCCCcEEecchHHhhCCcHHH
Q 046574           23 GTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANPDLPR   62 (104)
Q Consensus        23 ~pvi~~Ggi~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~   62 (104)
                      .+|+..|+++++.+.+++....+|-+.+||.-+-=-+|..
T Consensus       213 irILYGGSV~~~N~~~l~~~~diDG~LvG~aSl~~~~F~~  252 (260)
T PRK15492        213 IPVFYGGSVNAENANELFGQPHIDGLFIGRSAWDADKFFA  252 (260)
T ss_pred             eeEEEcCccCHHHHHHHhcCCCCCEEEeehhhcCHHHHHH
Confidence            4788888889999999999999999999998774333433

>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5

Probab=81.21  E-value=2.5  Score=30.95  Aligned_cols=33  Identities=27%  Similarity=0.416  Sum_probs=27.3

Q ss_pred             CeEEEeCCCCHHHHHHHHHcCCCcEEecchHHhh
Q 046574           23 GTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLA   56 (104)
Q Consensus        23 ~pvi~~Ggi~~~~ae~~l~~g~~DlVa~gR~~la   56 (104)
                      ..+.+-||++.+.+..+.+.| +|.+..|+.+..
T Consensus       167 ~~I~vDGGI~~~~~~~~~~aG-ad~~V~Gs~iF~  199 (201)
T PF00834_consen  167 FEIEVDGGINEENIKQLVEAG-ADIFVAGSAIFK  199 (201)
T ss_dssp             SEEEEESSESTTTHHHHHHHT---EEEESHHHHT
T ss_pred             eEEEEECCCCHHHHHHHHHcC-CCEEEECHHHhC
Confidence            468888999999999999999 799999988764

1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....

>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional

Probab=80.98  E-value=2.5  Score=31.52  Aligned_cols=41  Identities=29%  Similarity=0.401  Sum_probs=30.6

Q ss_pred             CCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHhh
Q 046574           22 KGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEF   66 (104)
Q Consensus        22 ~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~~   66 (104)
                      +..++.+|.+ |+++++++++.| ++|+.-=   -.||++.+..++
T Consensus        69 p~~~vGaGTVl~~e~a~~a~~aG-A~FiVsP---~~~~~v~~~~~~  110 (222)
T PRK07114         69 PGMILGVGSIVDAATAALYIQLG-ANFIVTP---LFNPDIAKVCNR  110 (222)
T ss_pred             CCeEEeeEeCcCHHHHHHHHHcC-CCEEECC---CCCHHHHHHHHH
Confidence            3468999999 999999999999 6775431   257777766554

>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain

Probab=80.61  E-value=4.4  Score=32.03  Aligned_cols=38  Identities=26%  Similarity=0.249  Sum_probs=31.6

Q ss_pred             hHHHHHHHHcCCeEEEeCCCCHHHHHHHHHcCCCcEEec
Q 046574           12 HSLLLMRKAFKGTFLVAGGYDREDGNKAIAEGRADLVVY   50 (104)
Q Consensus        12 ~~~~~ir~~~~~pvi~~Ggi~~~~ae~~l~~g~~DlVa~   50 (104)
                      +..+.+++.+++|||+-|-.++++|+.+.+.| +|.|.+
T Consensus       203 ~~i~~l~~~~~~PvivKgv~~~~dA~~a~~~G-~d~I~v  240 (344)
T cd02922         203 DDIKWLRKHTKLPIVLKGVQTVEDAVLAAEYG-VDGIVL  240 (344)
T ss_pred             HHHHHHHHhcCCcEEEEcCCCHHHHHHHHHcC-CCEEEE
Confidence            35677999999999988655999999999888 788775

FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	104
1icp_A	376	Crystal Structure Of 12-Oxophytodienoate Reductase		2e-41
1vji_A	372	Gene Product Of At1g76680 From Arabidopsis Thaliana		2e-39
2hs6_A	402	Crystal Structure Of The E291k Mutant Of 12- Oxophy		3e-28
3hgo_A	402	Crystal Structure Of The F74yH244Y OPR3 DOUBLE MUTA		4e-28
2hs8_A	402	Crystal Structure Of The Y364f Mutant Of 12- Oxophy		9e-28
1q45_A	391	12-0xo-Phytodienoate Reductase Isoform 3 Length = 3		3e-25
3gka_A	361	Crystal Structure Of N-Ethylmaleimidine Reductase F		3e-17
4ab4_A	362	Structure Of Xenobiotic Reductase B From Pseudomona		1e-15
3gx9_A	377	Structure Of Morphinone Reductase N189a Mutant In C		7e-15
2r14_A	377	Structure Of Morphinone Reductase In Complex With T		7e-15
1gwj_A	377	Morphinone Reductase Length = 377		7e-15
4a3u_A	358	X-Structure Of The Old Yellow Enzyme Homologue From		9e-13
2gou_A	365	Structure Of Wild Type, Oxidized Sye1, An Oye Homol		3e-11
3aty_A	379	Crystal Structure Of Tcoye Length = 379		2e-10
3p67_A	373	T26s Mutant Of Pentaerythritol Tetranitrate Reducta		4e-10
3p7y_A	365	Pentaerythritol Tetranitrate Reductase Co-Crystal S		4e-10
2abb_A	364	Structure Of Petn Reductase Y186f In Complex With C		4e-10
3p62_A	373	Wild-Type Pentaerythritol Tetranitrate Reductase Co		4e-10
1h50_A	364	Stucture Of Pentaerythritol Tetranitrate Reductase		4e-10
3p74_A	373	H181n Mutant Of Pentaerythritol Tetranitrate Reduct		4e-10
3p82_A	365	H184n Mutant Of Pentaerythritol Tetranitrate Reduct		4e-10
1vyp_X	364	Stucture Of Pentaerythritol Tetranitrate Reductase		5e-10
1vys_X	364	Stucture Of Pentaerythritol Tetranitrate Reductase		5e-10
3p8i_A	365	Y351f Mutant Of Pentaerythritol Tetranitrate Reduct		1e-09
3p84_A	365	Y351a Mutant Of Pentaerythritol Tetranitrate Reduct		3e-09
3p8j_A	365	Y351s Mutant Of Pentaerythritol Tetranitrate Reduct		4e-09
1bwl_A	399	Old Yellow Enzyme (Oye1) Double Mutant H191n:n194h		7e-09
1oya_A	400	Old Yellow Enzyme At 2 Angstroms Resolution: Overal		7e-09
1bwk_A	399	Old Yellow Enzyme (Oye1) Mutant H191n Length = 399		8e-09
4ge8_A	400	Oye1-W116i Complexed With (S)-Carvone Length = 400		8e-09
3txz_A	400	Oye1-W116q Complexed With R-Carvone Length = 400		8e-09
3rnd_A	399	W116i-Oye1 Complexed With 2-(Hydroxymethyl)-Cyclope		8e-09
4gbu_A	400	Oye1-W116a In Complex With Aromatic Product Of S-Ca		2e-08
4gwe_A	400	W116l-Oye1 Complexed With (R)-Carvone Length = 400		2e-08
1k02_A	399	Crystal Structure Of Old Yellow Enzyme Mutant Gln11		2e-08
3tjl_A	407	Crystal Structure Of A Novel Oye From The Xylose-Fe		8e-04
4df2_A	407	P. Stipitis Oye2.6 Complexed With P-Chlorophenol Le		8e-04

>pdb|1ICP|A Chain A, Crystal Structure Of 12-Oxophytodienoate Reductase 1 From Tomato Complexed With Peg400 Length = 376

Iteration: 1
 Score =  164 bits (414), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 72/95 (75%), Positives = 83/95 (87%)
Query: 1   MKTVGEKSECPHSLLLMRKAFKGTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANPDL 60
           MKT  EK EC  SL+ MRKA+KGTF+VAGGYDREDGN+A+ E RADLV YGR F++NPDL
Sbjct: 280 MKTAWEKIECTESLVPMRKAYKGTFIVAGGYDREDGNRALIEDRADLVAYGRLFISNPDL 339
Query: 61  PRRFEFNAPLNKYNRETFYVSDPVVGYTDYPFLDT 95
           P+RFE NAPLNKYNR+TFY SDP+VGYTDYPFL+T
Sbjct: 340 PKRFELNAPLNKYNRDTFYTSDPIVGYTDYPFLET 374

>pdb|1VJI|A Chain A, Gene Product Of At1g76680 From Arabidopsis Thaliana Length = 372

Iteration: 1
 Score =  157 bits (396), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 68/97 (70%), Positives = 86/97 (88%)
Query: 1   MKTVGEKSECPHSLLLMRKAFKGTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANPDL 60
           MKT+GE   CPH+L+ MRKAFKGTF+ AGG+ REDGN+A+++GR DLV YGR+FLANPDL
Sbjct: 276 MKTMGEVHACPHTLMPMRKAFKGTFISAGGFTREDGNEAVSKGRTDLVAYGRWFLANPDL 335
Query: 61  PRRFEFNAPLNKYNRETFYVSDPVVGYTDYPFLDTSS 97
           P+RF+ +APLNKY+R TFY SDPVVGYTDYPFL++++
Sbjct: 336 PKRFQVDAPLNKYDRPTFYTSDPVVGYTDYPFLESTA 372

>pdb|2HS6|A Chain A, Crystal Structure Of The E291k Mutant Of 12- Oxophytodienoate Reductase 3 (Opr3) From Tomato Length = 402

Iteration: 1
 Score =  119 bits (299), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 53/90 (58%), Positives = 68/90 (75%)
Query: 4   VGEKSECPHSLLLMRKAFKGTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANPDLPRR 63
           +G + E    +  +R A++GTF+ +GGY RE G +A+A+G ADLV YGR F++NPDL  R
Sbjct: 301 LGSEEEEARLMRTLRNAYQGTFICSGGYTRELGIEAVAQGDADLVSYGRLFISNPDLVMR 360
Query: 64  FEFNAPLNKYNRETFYVSDPVVGYTDYPFL 93
            + NAPLNKYNR+TFY  DPVVGYTDYPFL
Sbjct: 361 IKLNAPLNKYNRKTFYTQDPVVGYTDYPFL 390

>pdb|3HGO|A Chain A, Crystal Structure Of The F74yH244Y OPR3 DOUBLE MUTANT FROM Tomato Length = 402

Iteration: 1
 Score =  119 bits (298), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 53/90 (58%), Positives = 68/90 (75%)
Query: 4   VGEKSECPHSLLLMRKAFKGTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANPDLPRR 63
           +G + E    +  +R A++GTF+ +GGY RE G +A+A+G ADLV YGR F++NPDL  R
Sbjct: 301 LGSEEEEARLMRTLRNAYQGTFICSGGYTRELGIEAVAQGDADLVSYGRLFISNPDLVMR 360
Query: 64  FEFNAPLNKYNRETFYVSDPVVGYTDYPFL 93
            + NAPLNKYNR+TFY  DPVVGYTDYPFL
Sbjct: 361 IKLNAPLNKYNRKTFYTQDPVVGYTDYPFL 390

>pdb|2HS8|A Chain A, Crystal Structure Of The Y364f Mutant Of 12- Oxophytodienoate Reductase 3 From Tomato Length = 402

Iteration: 1
 Score =  118 bits (295), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 52/90 (57%), Positives = 68/90 (75%)
Query: 4   VGEKSECPHSLLLMRKAFKGTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANPDLPRR 63
           +G + E    +  +R A++GTF+ +GGY RE G +A+A+G ADLV YGR F++NPDL  R
Sbjct: 301 LGSEEEEARLMRTLRNAYQGTFICSGGYTRELGIEAVAQGDADLVSYGRLFISNPDLVMR 360
Query: 64  FEFNAPLNKYNRETFYVSDPVVGYTDYPFL 93
            + NAPLNK+NR+TFY  DPVVGYTDYPFL
Sbjct: 361 IKLNAPLNKFNRKTFYTQDPVVGYTDYPFL 390

>pdb|1Q45|A Chain A, 12-0xo-Phytodienoate Reductase Isoform 3 Length = 391

Iteration: 1
 Score =  110 bits (274), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 47/77 (61%), Positives = 61/77 (79%)
Query: 17  MRKAFKGTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEFNAPLNKYNRE 76
           +R A+ GTF+ +GG+++E G +A+ +G ADLV YGR F+ANPDL  RF+ +  LNKYNR+
Sbjct: 309 LRMAYNGTFMSSGGFNKELGMQAVQQGDADLVSYGRLFIANPDLVSRFKIDGELNKYNRK 368
Query: 77  TFYVSDPVVGYTDYPFL 93
           TFY  DPVVGYTDYPFL
Sbjct: 369 TFYTQDPVVGYTDYPFL 385

>pdb|3GKA|A Chain A, Crystal Structure Of N-Ethylmaleimidine Reductase From Burkholderia Pseudomallei Length = 361

Iteration: 1
 Score = 83.6 bits (205), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 38/81 (46%), Positives = 54/81 (66%), Gaps = 1/81 (1%)
Query: 17  MRKAFKGTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEFNAPLNKYNRE 76
           ++ AF G F+V   +  +    A+  G+AD V +G+ F+ANPDLPRRF+ NAPLN+ N  
Sbjct: 282 LKAAFGGPFIVNENFTLDSAQAALDAGQADAVAWGKLFIANPDLPRRFKLNAPLNEPNAA 341
Query: 77  TFYVSDPVVGYTDYPFLDTSS 97
           TFY     VGYTDYP L++++
Sbjct: 342 TFYAQGE-VGYTDYPALESAA 361

>pdb|4AB4|A Chain A, Structure Of Xenobiotic Reductase B From Pseudomonas Putida In Complex With Tnt Length = 362

Iteration: 1
 Score = 78.2 bits (191), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 38/82 (46%), Positives = 54/82 (65%), Gaps = 1/82 (1%)
Query: 16  LMRKAFKGTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEFNAPLNKYNR 75
           L+++AF G ++V   +D+   N A+A G+AD V +G  F+ANPDLP R   +APLN+ + 
Sbjct: 273 LIKEAFGGPYIVNERFDKASANAALASGKADAVAFGVPFIANPDLPARLAADAPLNEAHP 332
Query: 76  ETFYVSDPVVGYTDYPFLDTSS 97
           ETFY   P VGY DYP L  ++
Sbjct: 333 ETFYGKGP-VGYIDYPRLKLAA 353

>pdb|3GX9|A Chain A, Structure Of Morphinone Reductase N189a Mutant In Complex With Tetrahydronad Length = 377

Iteration: 1
 Score = 75.5 bits (184), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 38/78 (48%), Positives = 46/78 (58%), Gaps = 1/78 (1%)
Query: 17  MRKAFKGTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEFNAPLNKYNRE 76
           MR+ FKG  +  G YD       + +  AD V +GR F+ANPDLP RF   A LN+ +  
Sbjct: 294 MRQRFKGGLIYCGNYDAGRAQARLDDNTADAVAFGRPFIANPDLPERFRLGAALNEPDPS 353
Query: 77  TFYVSDPVVGYTDYPFLD 94
           TFY     VGYTDYPFLD
Sbjct: 354 TFY-GGAEVGYTDYPFLD 370

>pdb|2R14|A Chain A, Structure Of Morphinone Reductase In Complex With Tetrahydronad Length = 377

Iteration: 1
 Score = 75.5 bits (184), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 38/78 (48%), Positives = 46/78 (58%), Gaps = 1/78 (1%)
Query: 17  MRKAFKGTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEFNAPLNKYNRE 76
           MR+ FKG  +  G YD       + +  AD V +GR F+ANPDLP RF   A LN+ +  
Sbjct: 294 MRQRFKGGLIYCGNYDAGRAQARLDDNTADAVAFGRPFIANPDLPERFRLGAALNEPDPS 353
Query: 77  TFYVSDPVVGYTDYPFLD 94
           TFY     VGYTDYPFLD
Sbjct: 354 TFY-GGAEVGYTDYPFLD 370

>pdb|1GWJ|A Chain A, Morphinone Reductase Length = 377

Iteration: 1
 Score = 75.5 bits (184), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 38/78 (48%), Positives = 46/78 (58%), Gaps = 1/78 (1%)
Query: 17  MRKAFKGTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEFNAPLNKYNRE 76
           MR+ FKG  +  G YD       + +  AD V +GR F+ANPDLP RF   A LN+ +  
Sbjct: 294 MRQRFKGGLIYCGNYDAGRAQARLDDNTADAVAFGRPFIANPDLPERFRLGAALNEPDPS 353
Query: 77  TFYVSDPVVGYTDYPFLD 94
           TFY     VGYTDYPFLD
Sbjct: 354 TFY-GGAEVGYTDYPFLD 370

>pdb|4A3U|A Chain A, X-Structure Of The Old Yellow Enzyme Homologue From Zymomonas Mobilis (Ncr) Length = 358

Iteration: 1
 Score = 68.6 bits (166), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 38/87 (43%), Positives = 48/87 (55%), Gaps = 1/87 (1%)
Query: 7   KSECPHSLLLMRKAFKGTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEF 66
           K++ P     +RK FK   ++   Y  E    A+  G AD + +GR F+ NPDLPRRF  
Sbjct: 271 KTDQPKLSPEIRKVFKPPLVLNQDYTFETAQAALDSGVADAISFGRPFIGNPDLPRRFFE 330
Query: 67  NAPLNKYNRETFYVSDPVVGYTDYPFL 93
            APL K   ET+Y   P  GYTDYP L
Sbjct: 331 KAPLTKDVIETWYTQTP-KGYTDYPLL 356

>pdb|2GOU|A Chain A, Structure Of Wild Type, Oxidized Sye1, An Oye Homologue From S. Oneidensis Length = 365

Iteration: 1
 Score = 63.2 bits (152), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 30/75 (40%), Positives = 45/75 (60%), Gaps = 1/75 (1%)
Query: 17  MRKAFKGTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEFNAPLNKYNRE 76
           +R+A++G  + AG Y+ E   +AI +G AD++ +GR F+ANPDLP R     PL ++   
Sbjct: 288 LREAYQGVLIYAGRYNAEKAEQAINDGLADMIGFGRPFIANPDLPERLRHGYPLAEHVPA 347
Query: 77  TFYVSDPVVGYTDYP 91
           T +      G TDYP
Sbjct: 348 TLFGGGE-KGLTDYP 361

>pdb|3ATY|A Chain A, Crystal Structure Of Tcoye Length = 379

Iteration: 1
 Score = 61.2 bits (147), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 31/75 (41%), Positives = 45/75 (60%), Gaps = 1/75 (1%)
Query: 17  MRKAFKGTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEFNAPLNKYNRE 76
           +R ++ G  +    YD E+ ++ I EG+ D V +G  F+ANPDL  R + N PLN+   E
Sbjct: 302 VRGSYSGVKISNLRYDFEEADQQIREGKVDAVAFGAKFIANPDLVERAQQNWPLNEPRPE 361
Query: 77  TFYVSDPVVGYTDYP 91
           T+Y +   VGY DYP
Sbjct: 362 TYY-TRTAVGYNDYP 375

>pdb|3P67|A Chain A, T26s Mutant Of Pentaerythritol Tetranitrate Reductase Containing A Bound Acetate Molecule Length = 373

Iteration: 1
 Score = 59.7 bits (143), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 32/77 (41%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Query: 17  MRKAFKGTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEFNAPLNKYNRE 76
           +R+ F G  + AG Y  E     I +G  D V +GR ++ANPDL  R +  A LN    E
Sbjct: 290 VRERFHGVIIGAGAYTAEKAEDLIGKGLIDAVAFGRDYIANPDLVARLQKKAELNPQRPE 349
Query: 77  TFYVSDPVVGYTDYPFL 93
           +FY      GYTDYP L
Sbjct: 350 SFY-GGGAEGYTDYPSL 365

>pdb|3P7Y|A Chain A, Pentaerythritol Tetranitrate Reductase Co-Crystal Structure With Bound (E)-1-(2'-Hydroxyphenyl)-2-Nitroethene Length = 365

Iteration: 1
 Score = 59.7 bits (143), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 32/77 (41%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Query: 17  MRKAFKGTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEFNAPLNKYNRE 76
           +R+ F G  + AG Y  E     I +G  D V +GR ++ANPDL  R +  A LN    E
Sbjct: 290 VRERFHGVIIGAGAYTAEKAEDLIGKGLIDAVAFGRDYIANPDLVARLQKKAELNPQRPE 349
Query: 77  TFYVSDPVVGYTDYPFL 93
           +FY      GYTDYP L
Sbjct: 350 SFY-GGGAEGYTDYPSL 365

>pdb|2ABB|A Chain A, Structure Of Petn Reductase Y186f In Complex With Cyanide Length = 364

Iteration: 1
 Score = 59.7 bits (143), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 32/77 (41%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Query: 17  MRKAFKGTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEFNAPLNKYNRE 76
           +R+ F G  + AG Y  E     I +G  D V +GR ++ANPDL  R +  A LN    E
Sbjct: 289 VRERFHGVIIGAGAYTAEKAEDLIGKGLIDAVAFGRDYIANPDLVARLQKKAELNPQRPE 348
Query: 77  TFYVSDPVVGYTDYPFL 93
           +FY      GYTDYP L
Sbjct: 349 SFY-GGGAEGYTDYPSL 364

>pdb|3P62|A Chain A, Wild-Type Pentaerythritol Tetranitrate Reductase Containing A C- Terminal 8-Histidine Tag Length = 373

Iteration: 1
 Score = 59.7 bits (143), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 32/77 (41%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Query: 17  MRKAFKGTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEFNAPLNKYNRE 76
           +R+ F G  + AG Y  E     I +G  D V +GR ++ANPDL  R +  A LN    E
Sbjct: 290 VRERFHGVIIGAGAYTAEKAEDLIGKGLIDAVAFGRDYIANPDLVARLQKKAELNPQRPE 349
Query: 77  TFYVSDPVVGYTDYPFL 93
           +FY      GYTDYP L
Sbjct: 350 SFY-GGGAEGYTDYPSL 365

>pdb|1H50|A Chain A, Stucture Of Pentaerythritol Tetranitrate Reductase And Complexes Length = 364

Iteration: 1
 Score = 59.7 bits (143), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 32/77 (41%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Query: 17  MRKAFKGTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEFNAPLNKYNRE 76
           +R+ F G  + AG Y  E     I +G  D V +GR ++ANPDL  R +  A LN    E
Sbjct: 289 VRERFHGVIIGAGAYTAEKAEDLIGKGLIDAVAFGRDYIANPDLVARLQKKAELNPQRPE 348
Query: 77  TFYVSDPVVGYTDYPFL 93
           +FY      GYTDYP L
Sbjct: 349 SFY-GGGAEGYTDYPSL 364

>pdb|3P74|A Chain A, H181n Mutant Of Pentaerythritol Tetranitrate Reductase Containing A C- Terminal His8-Tag Length = 373

Iteration: 1
 Score = 59.7 bits (143), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 32/77 (41%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Query: 17  MRKAFKGTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEFNAPLNKYNRE 76
           +R+ F G  + AG Y  E     I +G  D V +GR ++ANPDL  R +  A LN    E
Sbjct: 290 VRERFHGVIIGAGAYTAEKAEDLIGKGLIDAVAFGRDYIANPDLVARLQKKAELNPQRPE 349
Query: 77  TFYVSDPVVGYTDYPFL 93
           +FY      GYTDYP L
Sbjct: 350 SFY-GGGAEGYTDYPSL 365

>pdb|3P82|A Chain A, H184n Mutant Of Pentaerythritol Tetranitrate Reductase Containing Bound Acetate Ion Length = 365

Iteration: 1
 Score = 59.7 bits (143), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 32/77 (41%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Query: 17  MRKAFKGTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEFNAPLNKYNRE 76
           +R+ F G  + AG Y  E     I +G  D V +GR ++ANPDL  R +  A LN    E
Sbjct: 290 VRERFHGVIIGAGAYTAEKAEDLIGKGLIDAVAFGRDYIANPDLVARLQKKAELNPQRPE 349
Query: 77  TFYVSDPVVGYTDYPFL 93
           +FY      GYTDYP L
Sbjct: 350 SFY-GGGAEGYTDYPSL 365

>pdb|1VYP|X Chain X, Stucture Of Pentaerythritol Tetranitrate Reductase W102f Mutant And Complexed With Picric Acid Length = 364

Iteration: 1
 Score = 59.3 bits (142), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 32/77 (41%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Query: 17  MRKAFKGTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEFNAPLNKYNRE 76
           +R+ F G  + AG Y  E     I +G  D V +GR ++ANPDL  R +  A LN    E
Sbjct: 289 VRERFHGVIIGAGAYTAEKAEDLIGKGLIDAVAFGRDYIANPDLVARLQKKAELNPQRPE 348
Query: 77  TFYVSDPVVGYTDYPFL 93
           +FY      GYTDYP L
Sbjct: 349 SFY-GGGAEGYTDYPSL 364

>pdb|1VYS|X Chain X, Stucture Of Pentaerythritol Tetranitrate Reductase W102y Mutant And Complexed With Picric Acid Length = 364

Iteration: 1
 Score = 59.3 bits (142), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 32/77 (41%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Query: 17  MRKAFKGTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEFNAPLNKYNRE 76
           +R+ F G  + AG Y  E     I +G  D V +GR ++ANPDL  R +  A LN    E
Sbjct: 289 VRERFHGVIIGAGAYTAEKAEDLIGKGLIDAVAFGRDYIANPDLVARLQKKAELNPQRPE 348
Query: 77  TFYVSDPVVGYTDYPFL 93
           +FY      GYTDYP L
Sbjct: 349 SFY-GGGAEGYTDYPSL 364

>pdb|3P8I|A Chain A, Y351f Mutant Of Pentaerythritol Tetranitrate Reductase Containing A Bound Acetate Molecule Length = 365

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 31/77 (40%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Query: 17  MRKAFKGTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEFNAPLNKYNRE 76
           +R+ F G  + AG Y  E     I +G  D V +GR ++ANPDL  R +  A LN    E
Sbjct: 290 VRERFHGVIIGAGAYTAEKAEDLIGKGLIDAVAFGRDYIANPDLVARLQKKAELNPQRPE 349
Query: 77  TFYVSDPVVGYTDYPFL 93
           +F+      GYTDYP L
Sbjct: 350 SFF-GGGAEGYTDYPSL 365

>pdb|3P84|A Chain A, Y351a Mutant Of Pentaerythritol Tetranitrate Reductase Containing A Bound Acetate Molecule Length = 365

Iteration: 1
 Score = 57.0 bits (136), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 31/77 (40%), Positives = 40/77 (51%), Gaps = 1/77 (1%)
Query: 17  MRKAFKGTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEFNAPLNKYNRE 76
           +R+ F G  + AG Y  E     I +G  D V +GR ++ANPDL  R +  A LN    E
Sbjct: 290 VRERFHGVIIGAGAYTAEKAEDLIGKGLIDAVAFGRDYIANPDLVARLQKKAELNPQRPE 349
Query: 77  TFYVSDPVVGYTDYPFL 93
           +F       GYTDYP L
Sbjct: 350 SF-AGGGAEGYTDYPSL 365

>pdb|3P8J|A Chain A, Y351s Mutant Of Pentaerythritol Tetranitrate Reductase Containing A Bound Acetate Molecule Length = 365

Iteration: 1
 Score = 56.6 bits (135), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 31/77 (40%), Positives = 40/77 (51%), Gaps = 1/77 (1%)
Query: 17  MRKAFKGTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEFNAPLNKYNRE 76
           +R+ F G  + AG Y  E     I +G  D V +GR ++ANPDL  R +  A LN    E
Sbjct: 290 VRERFHGVIIGAGAYTAEKAEDLIGKGLIDAVAFGRDYIANPDLVARLQKKAELNPQRPE 349
Query: 77  TFYVSDPVVGYTDYPFL 93
           +F       GYTDYP L
Sbjct: 350 SF-SGGGAEGYTDYPSL 365

>pdb|1BWL|A Chain A, Old Yellow Enzyme (Oye1) Double Mutant H191n:n194h Length = 399

Iteration: 1
 Score = 55.5 bits (132), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 26/45 (57%), Positives = 31/45 (68%), Gaps = 1/45 (2%)
Query: 47  LVVYGRFFLANPDLPRRFEFNAPLNKYNRETFYVSDPVVGYTDYP 91
           L+ YGRFF++NPDL  R E   PLNKY+R+TFY      GY DYP
Sbjct: 343 LIGYGRFFISNPDLVDRLEKGLPLNKYDRDTFY-QMSAHGYIDYP 386

>pdb|1OYA|A Chain A, Old Yellow Enzyme At 2 Angstroms Resolution: Overall Structure, Ligand Binding And Comparison With Related Flavoproteins Length = 400

Iteration: 1
 Score = 55.5 bits (132), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 26/45 (57%), Positives = 31/45 (68%), Gaps = 1/45 (2%)
Query: 47  LVVYGRFFLANPDLPRRFEFNAPLNKYNRETFYVSDPVVGYTDYP 91
           L+ YGRFF++NPDL  R E   PLNKY+R+TFY      GY DYP
Sbjct: 344 LIGYGRFFISNPDLVDRLEKGLPLNKYDRDTFY-QMSAHGYIDYP 387

>pdb|1BWK|A Chain A, Old Yellow Enzyme (Oye1) Mutant H191n Length = 399

Iteration: 1
 Score = 55.5 bits (132), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 26/45 (57%), Positives = 31/45 (68%), Gaps = 1/45 (2%)
Query: 47  LVVYGRFFLANPDLPRRFEFNAPLNKYNRETFYVSDPVVGYTDYP 91
           L+ YGRFF++NPDL  R E   PLNKY+R+TFY      GY DYP
Sbjct: 343 LIGYGRFFISNPDLVDRLEKGLPLNKYDRDTFY-QMSAHGYIDYP 386

>pdb|4GE8|A Chain A, Oye1-W116i Complexed With (S)-Carvone Length = 400

Iteration: 1
 Score = 55.5 bits (132), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 26/45 (57%), Positives = 31/45 (68%), Gaps = 1/45 (2%)
Query: 47  LVVYGRFFLANPDLPRRFEFNAPLNKYNRETFYVSDPVVGYTDYP 91
           L+ YGRFF++NPDL  R E   PLNKY+R+TFY      GY DYP
Sbjct: 344 LIGYGRFFISNPDLVDRLEKGLPLNKYDRDTFY-QMSAHGYIDYP 387

>pdb|3TXZ|A Chain A, Oye1-W116q Complexed With R-Carvone Length = 400

Iteration: 1
 Score = 55.5 bits (132), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 26/45 (57%), Positives = 31/45 (68%), Gaps = 1/45 (2%)
Query: 47  LVVYGRFFLANPDLPRRFEFNAPLNKYNRETFYVSDPVVGYTDYP 91
           L+ YGRFF++NPDL  R E   PLNKY+R+TFY      GY DYP
Sbjct: 344 LIGYGRFFISNPDLVDRLEKGLPLNKYDRDTFY-QMSAHGYIDYP 387

>pdb|3RND|A Chain A, W116i-Oye1 Complexed With 2-(Hydroxymethyl)-Cyclopent-2-Enone Length = 399

Iteration: 1
 Score = 55.5 bits (132), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 26/45 (57%), Positives = 31/45 (68%), Gaps = 1/45 (2%)
Query: 47  LVVYGRFFLANPDLPRRFEFNAPLNKYNRETFYVSDPVVGYTDYP 91
           L+ YGRFF++NPDL  R E   PLNKY+R+TFY      GY DYP
Sbjct: 343 LIGYGRFFISNPDLVDRLEKGLPLNKYDRDTFY-QMSAHGYIDYP 386

>pdb|4GBU|A Chain A, Oye1-W116a In Complex With Aromatic Product Of S-Carvone Dismutation Length = 400

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 26/45 (57%), Positives = 31/45 (68%), Gaps = 1/45 (2%)
Query: 47  LVVYGRFFLANPDLPRRFEFNAPLNKYNRETFYVSDPVVGYTDYP 91
           L+ YGRFF++NPDL  R E   PLNKY+R+TFY      GY DYP
Sbjct: 344 LIGYGRFFISNPDLVDRLEKGLPLNKYDRDTFYQMS-AHGYIDYP 387

>pdb|4GWE|A Chain A, W116l-Oye1 Complexed With (R)-Carvone Length = 400

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 26/45 (57%), Positives = 31/45 (68%), Gaps = 1/45 (2%)
Query: 47  LVVYGRFFLANPDLPRRFEFNAPLNKYNRETFYVSDPVVGYTDYP 91
           L+ YGRFF++NPDL  R E   PLNKY+R+TFY      GY DYP
Sbjct: 344 LIGYGRFFISNPDLVDRLEKGLPLNKYDRDTFYQMS-AHGYIDYP 387

>pdb|1K02|A Chain A, Crystal Structure Of Old Yellow Enzyme Mutant Gln114asn Length = 399

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 26/45 (57%), Positives = 31/45 (68%), Gaps = 1/45 (2%)
Query: 47  LVVYGRFFLANPDLPRRFEFNAPLNKYNRETFYVSDPVVGYTDYP 91
           L+ YGRFF++NPDL  R E   PLNKY+R+TFY      GY DYP
Sbjct: 343 LIGYGRFFISNPDLVDRLEKGLPLNKYDRDTFYQMS-AHGYIDYP 386

>pdb|3TJL|A Chain A, Crystal Structure Of A Novel Oye From The Xylose-Fermenting Fungus P. Stipitis Length = 407

Iteration: 1
 Score = 38.9 bits (89), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 28/79 (35%), Positives = 39/79 (49%), Gaps = 5/79 (6%)
Query: 16  LMRKAFKGTFLVAGGYDREDGN-KAIAEGRAD---LVVYGRFFLANPDLPRRFEFNAPLN 71
            + K +KG  L AG Y  +    K + E  AD   LV + R+F +NP+L  +      L 
Sbjct: 307 FVSKIWKGVILKAGNYSYDAPEFKTLKEDIADKRTLVGFSRYFTSNPNLVWKLRDGIDLV 366
Query: 72  KYNRETFYVSDPVVGYTDY 90
            Y+R TFY SD   GY  +
Sbjct: 367 PYDRNTFY-SDNNYGYNTF 384

>pdb|4DF2|A Chain A, P. Stipitis Oye2.6 Complexed With P-Chlorophenol Length = 407

Iteration: 1
 Score = 38.9 bits (89), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 28/79 (35%), Positives = 39/79 (49%), Gaps = 5/79 (6%)
Query: 16  LMRKAFKGTFLVAGGYDREDGN-KAIAEGRAD---LVVYGRFFLANPDLPRRFEFNAPLN 71
            + K +KG  L AG Y  +    K + E  AD   LV + R+F +NP+L  +      L 
Sbjct: 307 FVSKIWKGVILKAGNYSYDAPEFKTLKEDIADKRTLVGFSRYFTSNPNLVWKLRDGIDLV 366
Query: 72  KYNRETFYVSDPVVGYTDY 90
            Y+R TFY SD   GY  +
Sbjct: 367 PYDRNTFY-SDNNYGYNTF 384

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	104
1icp_A	376	OPR1, 12-oxophytodienoate reductase 1; beta-alpha-	3e-51
2hsa_B	402	12-oxophytodienoate reductase 3; alpha beta 8 barr	2e-47
1vyr_A	364	Pentaerythritol tetranitrate reductase; oxidoreduc	5e-46
2r14_A	377	Morphinone reductase; H-tunnelling, flavoprotein,	6e-46
3aty_A	379	Tcoye, prostaglandin F2A synthase; alpha/beta barr	1e-45
3gka_A	361	N-ethylmaleimide reductase; decode biostructures,	6e-45
2gou_A	365	Oxidoreductase, FMN-binding; OLD yeallow enzyme, f	6e-44
3rnd_A	399	NADPH dehydrogenase 1; TIM barrel, oxidoreductase;	3e-43
3tjl_A	407	NADPH dehydrogenase; OLD yellow enzyme, flavin mon	9e-41
3l5a_A	419	NADH/flavin oxidoreductase/NADH oxidase; OLD yello	1e-08
1z41_A	338	YQJM, probable NADH-dependent flavin oxidoreductas	2e-05
3hgj_A	349	Chromate reductase; TIM barrel, oxidoreductase; HE	2e-05
3l5l_A	363	Xenobiotic reductase A; TIM barrel, oxidoreductase	2e-05
3gr7_A	340	NADPH dehydrogenase; flavin, FMN, beta-alpha-barre	2e-05
3kru_A	343	NADH:flavin oxidoreductase/NADH oxidase; homotetra	4e-05
1ps9_A	671	2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel	4e-05
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	4e-05
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	5e-05

>1icp_A OPR1, 12-oxophytodienoate reductase 1; beta-alpha-barrel, protein-FMN-PEG complex, oxidoreductase; HET: FMN 2PE; 1.90A {Solanum lycopersicum} SCOP: c.1.4.1 PDB: 1icq_A* 1ics_A* 3hgr_A* 1vji_A* 2q3r_A* Length = 376

 Score =  164 bits (417), Expect = 3e-51
 Identities = 72/97 (74%), Positives = 84/97 (86%)

Query: 1   MKTVGEKSECPHSLLLMRKAFKGTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANPDL 60
           MKT  EK EC  SL+ MRKA+KGTF+VAGGYDREDGN+A+ E RADLV YGR F++NPDL
Sbjct: 280 MKTAWEKIECTESLVPMRKAYKGTFIVAGGYDREDGNRALIEDRADLVAYGRLFISNPDL 339

Query: 61  PRRFEFNAPLNKYNRETFYVSDPVVGYTDYPFLDTSS 97
           P+RFE NAPLNKYNR+TFY SDP+VGYTDYPFL+T +
Sbjct: 340 PKRFELNAPLNKYNRDTFYTSDPIVGYTDYPFLETMT 376

>2hsa_B 12-oxophytodienoate reductase 3; alpha beta 8 barrel, flavoprotein, jasmonate biosynthesis, oxidoreductase; HET: FMN; 1.50A {Solanum lycopersicum} PDB: 2hs6_A* 3hgs_A* 2hs8_A* 3hgo_A* 1q45_A* 2g5w_A* 2q3o_A* Length = 402

 Score =  155 bits (393), Expect = 2e-47
 Identities = 53/95 (55%), Positives = 69/95 (72%)

Query: 3   TVGEKSECPHSLLLMRKAFKGTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANPDLPR 62
            +G + E    +  +R A++GTF+ +GGY RE G +A+A+G ADLV YGR F++NPDL  
Sbjct: 300 RLGSEEEEARLMRTLRNAYQGTFICSGGYTRELGIEAVAQGDADLVSYGRLFISNPDLVM 359

Query: 63  RFEFNAPLNKYNRETFYVSDPVVGYTDYPFLDTSS 97
           R + NAPLNKYNR+TFY  DPVVGYTDYPFL  + 
Sbjct: 360 RIKLNAPLNKYNRKTFYTQDPVVGYTDYPFLQGNG 394

>1vyr_A Pentaerythritol tetranitrate reductase; oxidoreductase, flavoenzyme, explosive degradation, steroid binding; HET: FMN TNF; 0.9A {Enterobacter cloacae} SCOP: c.1.4.1 PDB: 1gvq_A* 1gvr_A* 1gvs_A* 1h50_A* 1h51_A* 1h60_A* 1h61_A* 1h62_A* 1h63_A* 1gvo_A* 2aba_A* 3f03_K* 3kft_A* 3p7y_A* 3p80_A* 3p81_A* 3p62_A* 3p8i_A* 2abb_A* 3p67_A* ... Length = 364

 Score =  150 bits (381), Expect = 5e-46
 Identities = 34/91 (37%), Positives = 43/91 (47%), Gaps = 1/91 (1%)

Query: 3   TVGEKSECPHSLLLMRKAFKGTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANPDLPR 62
             G K         +R+ F G  + AG Y  E     I +G  D V +GR ++ANPDL  
Sbjct: 275 LAGGKPYSEAFRQKVRERFHGVIIGAGAYTAEKAEDLIGKGLIDAVAFGRDYIANPDLVA 334

Query: 63  RFEFNAPLNKYNRETFYVSDPVVGYTDYPFL 93
           R +  A LN    E+FY      GYTDYP L
Sbjct: 335 RLQKKAELNPQRPESFYGGGA-EGYTDYPSL 364

>2r14_A Morphinone reductase; H-tunnelling, flavoprotein, NADH, hydride transfer, oxidoreductase; HET: FMN TXD; 1.40A {Pseudomonas putida} PDB: 3gx9_A* 1gwj_A* Length = 377

 Score =  150 bits (381), Expect = 6e-46
 Identities = 40/96 (41%), Positives = 49/96 (51%), Gaps = 2/96 (2%)

Query: 3   TVGEKSECPHSLL-LMRKAFKGTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANPDLP 61
            +G     P      MR+ FKG  +  G YD       + +  AD V +GR F+ANPDLP
Sbjct: 279 WIGGDITYPEGFREQMRQRFKGGLIYCGNYDAGRAQARLDDNTADAVAFGRPFIANPDLP 338

Query: 62  RRFEFNAPLNKYNRETFYVSDPVVGYTDYPFLDTSS 97
            RF   A LN+ +  TFY     VGYTDYPFLD   
Sbjct: 339 ERFRLGAALNEPDPSTFYGGAE-VGYTDYPFLDNGH 373

>3aty_A Tcoye, prostaglandin F2A synthase; alpha/beta barrel, oxidoreductase, flavin mononucleotide; HET: FMN; 1.70A {Trypanosoma cruzi} PDB: 3atz_A* Length = 379

 Score =  149 bits (379), Expect = 1e-45
 Identities = 31/87 (35%), Positives = 47/87 (54%), Gaps = 1/87 (1%)

Query: 8   SECPHSLLLMRKAFKGTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEFN 67
            +    +  +R ++ G  +    YD E+ ++ I EG+ D V +G  F+ANPDL  R + N
Sbjct: 293 QQIGDVVAWVRGSYSGVKISNLRYDFEEADQQIREGKVDAVAFGAKFIANPDLVERAQQN 352

Query: 68  APLNKYNRETFYVSDPVVGYTDYPFLD 94
            PLN+   ET+Y     VGY DYP  +
Sbjct: 353 WPLNEPRPETYYTRTA-VGYNDYPTYN 378

>3gka_A N-ethylmaleimide reductase; decode biostructures, ssgcid, niaid, targetdb bupsa00093A, structural genomics; HET: FMN; 2.30A {Burkholderia pseudomallei} Length = 361

 Score =  147 bits (374), Expect = 6e-45
 Identities = 38/81 (46%), Positives = 54/81 (66%), Gaps = 1/81 (1%)

Query: 17  MRKAFKGTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEFNAPLNKYNRE 76
           ++ AF G F+V   +  +    A+  G+AD V +G+ F+ANPDLPRRF+ NAPLN+ N  
Sbjct: 282 LKAAFGGPFIVNENFTLDSAQAALDAGQADAVAWGKLFIANPDLPRRFKLNAPLNEPNAA 341

Query: 77  TFYVSDPVVGYTDYPFLDTSS 97
           TFY     VGYTDYP L++++
Sbjct: 342 TFYAQGE-VGYTDYPALESAA 361

>2gou_A Oxidoreductase, FMN-binding; OLD yeallow enzyme, flavoenzyme; HET: BOG FMN PE4; 1.40A {Shewanella oneidensis} PDB: 2gq8_A* 2gq9_A* 2gqa_A* Length = 365

 Score =  144 bits (367), Expect = 6e-44
 Identities = 30/84 (35%), Positives = 45/84 (53%), Gaps = 1/84 (1%)

Query: 11  PHSLLLMRKAFKGTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEFNAPL 70
                 +R+A++G  + AG Y+ E   +AI +G AD++ +GR F+ANPDLP R     PL
Sbjct: 282 VSFKRALREAYQGVLIYAGRYNAEKAEQAINDGLADMIGFGRPFIANPDLPERLRHGYPL 341

Query: 71  NKYNRETFYVSDPVVGYTDYPFLD 94
            ++   T +      G TDYP   
Sbjct: 342 AEHVPATLFGGGE-KGLTDYPTYQ 364

>3rnd_A NADPH dehydrogenase 1; TIM barrel, oxidoreductase; HET: FMN 3RN; 1.40A {Saccharomyces pastorianus} PDB: 1oya_A* 1oyb_A* 1oyc_A* 3tx9_A* 1k02_A* 1k03_A* 1bwk_A* 1bwl_A* Length = 399

 Score =  143 bits (364), Expect = 3e-43
 Identities = 35/102 (34%), Positives = 51/102 (50%), Gaps = 2/102 (1%)

Query: 3   TVGEKSECPHSLLLMRKAFKGTFLVAGGYDRE-DGNKAIAEGRADLVVYGRFFLANPDLP 61
           T GE      S   +   +KG  + AG +    +  +   + +  L+ YGRFF++NPDL 
Sbjct: 298 TEGEGEYEGGSNDFVYSIWKGPVIRAGNFALHPEVVREEVKDKRTLIGYGRFFISNPDLV 357

Query: 62  RRFEFNAPLNKYNRETFYVSDPVVGYTDYPFLDTSSYVTKKK 103
            R E   PLNKY+R+TFY      GY DYP  + +  +   K
Sbjct: 358 DRLEKGLPLNKYDRDTFYQMSA-HGYIDYPTYEEALKLGWDK 398

>3tjl_A NADPH dehydrogenase; OLD yellow enzyme, flavin mononucleotide, TIM barrel, NADPH oxidoreductase, enone reductase; HET: FMN; 1.50A {Scheffersomyces stipitis cbs 6054} PDB: 3upw_A* 4df2_A* Length = 407

 Score =  137 bits (348), Expect = 9e-41
 Identities = 26/94 (27%), Positives = 40/94 (42%), Gaps = 5/94 (5%)

Query: 5   GEKSECPHSLLLMRKAFKGTFLVAGGYDREDGN-KAIAEGRAD---LVVYGRFFLANPDL 60
             + +       + K +KG  L AG Y  +    K + E  AD   LV + R+F +NP+L
Sbjct: 296 VSEEDQAGDNEFVSKIWKGVILKAGNYSYDAPEFKTLKEDIADKRTLVGFSRYFTSNPNL 355

Query: 61  PRRFEFNAPLNKYNRETFYVSDPVVGYTDYPFLD 94
             +      L  Y+R TFY  +   GY  +    
Sbjct: 356 VWKLRDGIDLVPYDRNTFYSDNN-YGYNTFSMDS 388

>3l5a_A NADH/flavin oxidoreductase/NADH oxidase; OLD yellow enzyme family, OYE-like FMN-binding domain, TIM B oxidoreductase; HET: PGE; 1.65A {Staphylococcus aureus} Length = 419

 Score = 49.6 bits (119), Expect = 1e-08
 Identities = 13/75 (17%), Positives = 23/75 (30%), Gaps = 11/75 (14%)

Query: 18  RKAFKGTFLV--AGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEFNAP----- 69
            +   G   +  +GG    E    A+    AD+V     F+  PD   +     P     
Sbjct: 312 YEHLAGRIPLIASGGINSPESALDAL--QHADMVGMSSPFVTEPDFVHKLAEQRPHDINL 369

Query: 70  -LNKYNRETFYVSDP 83
             +  + E   +   
Sbjct: 370 EFSMADLEDLAIPHA 384

>1z41_A YQJM, probable NADH-dependent flavin oxidoreductase YQJ; FMN, beta-alpha-barrel; HET: FMN; 1.30A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1z42_A* 1z44_A* 1z48_A* Length = 338

 Score = 40.6 bits (96), Expect = 2e-05
 Identities = 11/34 (32%), Positives = 15/34 (44%)

Query: 31  YDREDGNKAIAEGRADLVVYGRFFLANPDLPRRF 64
            D     + +  GRADL+  GR  L +P   R  
Sbjct: 287 TDGSMAEEILQNGRADLIFIGRELLRDPFFARTA 320

>3hgj_A Chromate reductase; TIM barrel, oxidoreductase; HET: FMN; 2.00A {Thermus scotoductus} PDB: 3hf3_A* Length = 349

 Score = 40.6 bits (96), Expect = 2e-05
 Identities = 11/28 (39%), Positives = 14/28 (50%)

Query: 37  NKAIAEGRADLVVYGRFFLANPDLPRRF 64
              +  G ADLV+ GR  L +P  P R 
Sbjct: 304 ETLLQAGSADLVLLGRVLLRDPYFPLRA 331

>3l5l_A Xenobiotic reductase A; TIM barrel, oxidoreductase; HET: BU3 FMN; 1.03A {Pseudomonas putida} PDB: 3l5m_A* 3n19_B* 3n16_A* 3l68_A* 3l67_A* 3l65_A* 3l66_A* 3n14_A* 2h8z_A* 2h90_A* 2h8x_A* Length = 363

 Score = 40.6 bits (96), Expect = 2e-05
 Identities = 9/28 (32%), Positives = 12/28 (42%)

Query: 37  NKAIAEGRADLVVYGRFFLANPDLPRRF 64
             A+   + DLV  GR  LA+P      
Sbjct: 311 EAALQANQLDLVSVGRAHLADPHWAYFA 338

>3gr7_A NADPH dehydrogenase; flavin, FMN, beta-alpha-barrel, oxidoreductase, flavoprotein; HET: FMN; 2.30A {Geobacillus kaustophilus} PDB: 3gr8_A* Length = 340

 Score = 40.6 bits (96), Expect = 2e-05
 Identities = 12/34 (35%), Positives = 14/34 (41%)

Query: 31  YDREDGNKAIAEGRADLVVYGRFFLANPDLPRRF 64
                  + +  GRADLV  GR  L NP  P   
Sbjct: 287 TSGWQAEEILQNGRADLVFLGRELLRNPYWPYAA 320

>3kru_A NADH:flavin oxidoreductase/NADH oxidase; homotetramer, dimer of dimers, TIM barrel, thermophilic, OLD enzyme; HET: FMN; 1.60A {Thermoanaerobacter pseudethanolicus AT} PDB: 3krz_A* Length = 343

 Score = 39.8 bits (94), Expect = 4e-05
 Identities = 11/33 (33%), Positives = 15/33 (45%)

Query: 31  YDREDGNKAIAEGRADLVVYGRFFLANPDLPRR 63
             +E   + ++  RADLV  GR  L NP     
Sbjct: 287 TTQELAEEILSNERADLVALGRELLRNPYWVLH 319

>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 Length = 671

 Score = 40.0 bits (94), Expect = 4e-05
 Identities = 10/31 (32%), Positives = 17/31 (54%)

Query: 32  DREDGNKAIAEGRADLVVYGRFFLANPDLPR 62
           D +  +  ++ G AD+V   R FLA+ +L  
Sbjct: 291 DPQVADDILSRGDADMVSMARPFLADAELLS 321

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex} Length = 690

 Score = 39.6 bits (93), Expect = 4e-05
 Identities = 9/31 (29%), Positives = 14/31 (45%)

Query: 32  DREDGNKAIAEGRADLVVYGRFFLANPDLPR 62
             +   + I  G  DL+   R  +A+P LP 
Sbjct: 305 SPDAMVRQIKAGILDLIGAARPSIADPFLPN 335

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A* Length = 729

 Score = 39.3 bits (92), Expect = 5e-05
 Identities = 9/29 (31%), Positives = 17/29 (58%)

Query: 34  EDGNKAIAEGRADLVVYGRFFLANPDLPR 62
           E   + + +G AD++   R  +A+P LP+
Sbjct: 304 EKMIEIVTKGYADIIGCARPSIADPFLPQ 332

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	104
4a3u_A	358	NCR, NADH\:flavin oxidoreductase/NADH oxidase; HET	99.89
4gbu_A	400	NADPH dehydrogenase 1; alpha/beta barrel, enenone	99.88
4ab4_A	362	Xenobiotic reductase B; oxidoreductase, OLD yellow	99.87
3gka_A	361	N-ethylmaleimide reductase; decode biostructures,	99.86
2hsa_B	402	12-oxophytodienoate reductase 3; alpha beta 8 barr	99.85
2r14_A	377	Morphinone reductase; H-tunnelling, flavoprotein,	99.84
3aty_A	379	Tcoye, prostaglandin F2A synthase; alpha/beta barr	99.84
2gou_A	365	Oxidoreductase, FMN-binding; OLD yeallow enzyme, f	99.83
1vyr_A	364	Pentaerythritol tetranitrate reductase; oxidoreduc	99.83
1icp_A	376	OPR1, 12-oxophytodienoate reductase 1; beta-alpha-	99.83
3tjl_A	407	NADPH dehydrogenase; OLD yellow enzyme, flavin mon	99.81
3gr7_A	340	NADPH dehydrogenase; flavin, FMN, beta-alpha-barre	99.44
3hgj_A	349	Chromate reductase; TIM barrel, oxidoreductase; HE	99.39
3kru_A	343	NADH:flavin oxidoreductase/NADH oxidase; homotetra	99.38
1z41_A	338	YQJM, probable NADH-dependent flavin oxidoreductas	99.35
3l5l_A	363	Xenobiotic reductase A; TIM barrel, oxidoreductase	99.34
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	99.33
3l5a_A	419	NADH/flavin oxidoreductase/NADH oxidase; OLD yello	99.3
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	99.29
1ps9_A	671	2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel	99.22
1f76_A	336	Dihydroorotate dehydrogenase; monomer, alpha-beta-	98.96
3b0p_A	350	TRNA-dihydrouridine synthase; TIM barrel, oxidored	98.85
2e6f_A	314	Dihydroorotate dehydrogenase; chagas disease, pyri	98.8
1ep3_A	311	Dihydroorotate dehydrogenase B (PYRD subunit); het	98.79
1vhn_A	318	Putative flavin oxidoreducatase; structural genomi	98.78
1jub_A	311	Dihydroorotate dehydrogenase A; homodimer, alpha-b	98.75
1tv5_A	443	Dhodehase, dihydroorotate dehydrogenase homolog, m	98.61
3tdn_A	247	FLR symmetric alpha-beta TIM barrel; symmetric sup	98.6
3oix_A	345	Putative dihydroorotate dehydrogenase; dihydrooro	98.44
4ef8_A	354	Dihydroorotate dehydrogenase; phenyl isothiocyanat	98.4
3tdn_A	247	FLR symmetric alpha-beta TIM barrel; symmetric sup	98.38
3zwt_A	367	Dihydroorotate dehydrogenase (quinone), mitochond;	98.38
3i65_A	415	Dihydroorotate dehydrogenase homolog, mitochondria	98.36
2z6i_A	332	Trans-2-enoyl-ACP reductase II; fatty acid synthes	98.26
1ka9_F	252	Imidazole glycerol phosphtate synthase; riken stru	98.23
1thf_D	253	HISF protein; thermophIle, TIM-barrel, histidine b	98.13
1h5y_A	253	HISF; histidine biosynthesis, TIM-barrel; 2.0A {Py	98.1
3vk5_A	286	MOEO5; TIM barrel, transferase; HET: FPQ; 1.39A {S	98.09
2y88_A	244	Phosphoribosyl isomerase A; aromatic amino acid bi	98.04
2y88_A	244	Phosphoribosyl isomerase A; aromatic amino acid bi	98.03
1vzw_A	244	Phosphoribosyl isomerase A; histidine biosynthesis	98.02
3bw2_A	369	2-nitropropane dioxygenase; TIM barrel, oxidoreduc	98.0
1qo2_A	241	Molecule: N-((5-phosphoribosyl)-formimino)-5-amino	97.97
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	97.95
2gjl_A	328	Hypothetical protein PA1024; 2-nitropropane dioxyg	97.94
1y0e_A	223	Putative N-acetylmannosamine-6-phosphate 2-epimer;	97.92
1vcf_A	332	Isopentenyl-diphosphate delta-isomerase; TIM barre	97.9
3tjx_A	354	Dihydroorotate dehydrogenase; PYRD, dhodh, lmdhodh	97.9
3vzx_A	228	Heptaprenylglyceryl phosphate synthase; biosynthes	97.9
1vrd_A	494	Inosine-5'-monophosphate dehydrogenase; TM1347, st	97.85
1jcn_A	514	Inosine monophosphate dehydrogenase I; IMPD, IMPDH	97.85
1ka9_F	252	Imidazole glycerol phosphtate synthase; riken stru	97.85
1thf_D	253	HISF protein; thermophIle, TIM-barrel, histidine b	97.73
1vzw_A	244	Phosphoribosyl isomerase A; histidine biosynthesis	97.73
1viz_A	240	PCRB protein homolog; structural genomics, unknown	97.73
1yad_A	221	Regulatory protein TENI; TIM barrel, transcription	97.73
2w6r_A	266	Imidazole glycerol phosphate synthase subunit HISF	97.72
1eep_A	404	Inosine 5'-monophosphate dehydrogenase; alpha-beta	97.68
1qo2_A	241	Molecule: N-((5-phosphoribosyl)-formimino)-5-amino	97.66
3f4w_A	211	Putative hexulose 6 phosphate synthase; humps, mal	97.63
3w01_A	235	Heptaprenylglyceryl phosphate synthase; biosynthes	97.61
1xi3_A	215	Thiamine phosphate pyrophosphorylase; structural g	97.58
2nli_A	368	Lactate oxidase; flavoenzyme, FMN, D-lactate, oxid	97.56
1h5y_A	253	HISF; histidine biosynthesis, TIM-barrel; 2.0A {Py	97.56
1p0k_A	349	Isopentenyl-diphosphate delta-isomerase; terpene b	97.55
3o07_A	291	Pyridoxine biosynthesis protein SNZ1; (beta/alpha)	97.53
1yxy_A	234	Putative N-acetylmannosamine-6-phosphate 2-epimer;	97.51
1ypf_A	336	GMP reductase; GUAC, purines, pyrimidines, nucleos	97.47
1xm3_A	264	Thiazole biosynthesis protein THIG; structural gen	97.42
1p4c_A	380	L(+)-mandelate dehydrogenase; TIM barrel, hydroxy	97.42
3ajx_A	207	3-hexulose-6-phosphate synthase; HPS, OMPDC supraf	97.42
2tps_A	227	Protein (thiamin phosphate synthase); thiamin bios	97.4
2nzl_A	392	Hydroxyacid oxidase 1; HAOX1, glycolate oxidase, G	97.39
3bo9_A	326	Putative nitroalkan dioxygenase; TM0800, structura	97.39
1gox_A	370	(S)-2-hydroxy-acid oxidase, peroxisomal; oxidoredu	97.38
3sgz_A	352	Hydroxyacid oxidase 2; flavoprotein, homology, INH	97.34
1wa3_A	205	2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG,	97.34
1kbi_A	511	Cytochrome B2, L-LCR; flavocytochrome B2, electron	97.34
1rpx_A	230	Protein (ribulose-phosphate 3-epimerase); chloropl	97.32
1h1y_A	228	D-ribulose-5-phosphate 3-epimerase; oxidative pent	97.31
4gj1_A	243	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) me	97.31
2w6r_A	266	Imidazole glycerol phosphate synthase subunit HISF	97.3
2qr6_A	393	IMP dehydrogenase/GMP reductase; NP_599840.1, G re	97.26
3r2g_A	361	Inosine 5'-monophosphate dehydrogenase; structural	97.25
2f6u_A	234	GGGPS, (S)-3-O-geranylgeranylglyceryl phosphate sy	97.24
2nv1_A	305	Pyridoxal biosynthesis lyase PDXS; (beta/alpha)8-b	97.24
2fli_A	220	Ribulose-phosphate 3-epimerase; (beta/alpha)8-barr	97.23
2yzr_A	330	Pyridoxal biosynthesis lyase PDXS; redox protein,	97.23
1jvn_A	555	Glutamine, bifunctional histidine biosynthesis pro	97.21
3vkj_A	368	Isopentenyl-diphosphate delta-isomerase; type 2 is	97.21
3q58_A	229	N-acetylmannosamine-6-phosphate 2-epimerase; TIM b	97.19
3khj_A	361	Inosine-5-monophosphate dehydrogenase; enzyme-inhi	97.15
3igs_A	232	N-acetylmannosamine-6-phosphate 2-epimerase 2; ene	97.1
1mzh_A	225	Deoxyribose-phosphate aldolase; alpha-beta barrel,	97.08
2c6q_A	351	GMP reductase 2; TIM barrel, metal-binding, NADP,	97.04
3kts_A	192	Glycerol uptake operon antiterminator regulatory;	97.04
2agk_A	260	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) me	97.03
3o63_A	243	Probable thiamine-phosphate pyrophosphorylase; thi	97.03
2v82_A	212	2-dehydro-3-deoxy-6-phosphogalactonate aldolase; l	97.02
2zbt_A	297	Pyridoxal biosynthesis lyase PDXS; pyridoxine bios	96.98
4fo4_A	366	Inosine 5'-monophosphate dehydrogenase; structural	96.92
4adt_A	297	Pyridoxine biosynthetic enzyme PDX1 homologue, PU;	96.92
3cwo_X	237	Beta/alpha-barrel protein based on 1THF and 1TMY;	96.91
3qja_A	272	IGPS, indole-3-glycerol phosphate synthase; struct	96.91
2qjg_A	273	Putative aldolase MJ0400; beta-alpha barrel, lyase	96.87
1tqj_A	230	Ribulose-phosphate 3-epimerase; beta-alpha barrel	96.85
3ceu_A	210	Thiamine phosphate pyrophosphorylase; TIM barrel-l	96.82
2yw3_A	207	4-hydroxy-2-oxoglutarate aldolase/2-deydro-3- deox	96.78
3ffs_A	400	Inosine-5-monophosphate dehydrogenase; beta-alpha	96.78
1vc4_A	254	Indole-3-glycerol phosphate synthase; lyase, trypt	96.74
1wv2_A	265	Thiazole moeity, thiazole biosynthesis protein THI	96.7
1q6o_A	216	Humps, 3-keto-L-gulonate 6-phosphate decarboxylase	96.68
3ovp_A	228	Ribulose-phosphate 3-epimerase; iron binding, isom	96.63
3jr2_A	218	Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulon	96.59
1tqx_A	227	D-ribulose-5-phosphate 3-epimerase, putative; stru	96.57
3tsm_A	272	IGPS, indole-3-glycerol phosphate synthase; struct	96.57
4avf_A	490	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	96.55
4fxs_A	496	Inosine-5'-monophosphate dehydrogenase; structural	96.5
1zfj_A	491	Inosine monophosphate dehydrogenase; IMPDH, CBS do	96.49
1geq_A	248	Tryptophan synthase alpha-subunit; hyperthermophIl	96.47
2czd_A	208	Orotidine 5'-phosphate decarboxylase; pyrimidine b	96.47
3sr7_A	365	Isopentenyl-diphosphate delta-isomerase; isopenten	96.47
1jvn_A	555	Glutamine, bifunctional histidine biosynthesis pro	96.42
3usb_A	511	Inosine-5'-monophosphate dehydrogenase; structural	96.42
1rd5_A	262	Tryptophan synthase alpha chain, chloroplast; hydr	96.36
3nav_A	271	Tryptophan synthase alpha chain; alpha subunit, st	96.31
2h6r_A	219	Triosephosphate isomerase; beta-alpha barrel; 2.30	96.3
1qop_A	268	Tryptophan synthase alpha chain; lyase, carbon-oxy	96.24
2cu0_A	486	Inosine-5'-monophosphate dehydrogenase; structural	96.22
2htm_A	268	Thiazole biosynthesis protein THIG; thiamin biosyn	96.22
2ekc_A	262	AQ_1548, tryptophan synthase alpha chain; structur	96.1
3vnd_A	267	TSA, tryptophan synthase alpha chain; psychrophili	96.0
1eix_A	245	Orotidine 5'-monophosphate decarboxylase; alpha-be	95.96
1wbh_A	214	KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli}	95.94
1ujp_A	271	Tryptophan synthase alpha chain; riken structural	95.94
2agk_A	260	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) me	95.9
1me8_A	503	Inosine-5'-monophosphate dehydrogenase; alpha beta	95.89
3inp_A	246	D-ribulose-phosphate 3-epimerase; IDP02542, isomer	95.88
1vhc_A	224	Putative KHG/KDPG aldolase; structural genomics, u	95.75
2yyu_A	246	Orotidine 5'-phosphate decarboxylase; TIM barrel,	95.69
1dbt_A	239	Orotidine 5'-phosphate decarboxylase; UMP, TIM bar	95.58
3cu2_A	237	Ribulose-5-phosphate 3-epimerase; YP_718263.1, rib	95.55
3ctl_A	231	D-allulose-6-phosphate 3-epimerase; D-glucitol 6-p	95.52
4a29_A	258	Engineered retro-aldol enzyme RA95.0; de novo prot	95.49
3exr_A	221	RMPD (hexulose-6-phosphate synthase); beta barrel,	95.47
1w8s_A	263	FBP aldolase, fructose-bisphosphate aldolase class	95.39
3ve9_A	215	Orotidine-5'-phosphate decarboxylase; TIM barrel f	95.39
3tha_A	252	Tryptophan synthase alpha chain; structural genomi	95.28
3lab_A	217	Putative KDPG (2-keto-3-deoxy-6-phosphogluconate)	95.04
3nl6_A	540	Thiamine biosynthetic bifunctional enzyme; thiamin	94.92
1mxs_A	225	KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate a	94.88
1vkf_A	188	Glycerol uptake operon antiterminator-related Pro;	94.75
2uva_G	2060	Fatty acid synthase beta subunits; fungal, dehydra	94.5
2pgw_A	384	Muconate cycloisomerase; enolase superfamily, octa	94.42
4dbe_A	222	Orotidine 5'-phosphate decarboxylase; TIM barrel,	94.28
1x1o_A	286	Nicotinate-nucleotide pyrophosphorylase; transfera	94.2
1vqt_A	213	Orotidine 5'-phosphate decarboxylase; TM0332, stru	94.07
4e38_A	232	Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho	94.04
2b7n_A	273	Probable nicotinate-nucleotide pyrophosphorylase;	94.04
1ea0_A	1479	Glutamate synthase [NADPH] large chain; oxidoreduc	93.82
1i4n_A	251	Indole-3-glycerol phosphate synthase; thermostable	93.66
1ofd_A	1520	Ferredoxin-dependent glutamate synthase 2; oxidore	93.58
2rdx_A	379	Mandelate racemase/muconate lactonizing enzyme, P;	93.49
4gj1_A	243	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) me	93.29
1mdl_A	359	Mandelate racemase; isomerase, mandelate pathway,	93.21
3ru6_A	303	Orotidine 5'-phosphate decarboxylase; structural g	93.19
2qr6_A	393	IMP dehydrogenase/GMP reductase; NP_599840.1, G re	93.02
2og9_A	393	Mandelate racemase/muconate lactonizing enzyme; NY	93.0
3glc_A	295	Aldolase LSRF; TIM barrel, lyase, schiff base; HET	92.9
2ovl_A	371	Putative racemase; structural genomics, PSI-2, pro	92.57
2jbm_A	299	Nicotinate-nucleotide pyrophosphorylase; NAD, enzy	92.41
1pii_A	452	N-(5'phosphoribosyl)anthranilate isomerase; bifunc	92.33
2nql_A	388	AGR_PAT_674P, isomerase/lactonizing enzyme; enolas	92.24
2qgy_A	391	Enolase from the environmental genome shotgun sequ	92.23
1to3_A	304	Putative aldolase YIHT; beta-alpha barrel, structu	92.22
3m47_A	228	Orotidine 5'-phosphate decarboxylase; orotidine 5'	92.01
1qap_A	296	Quinolinic acid phosphoribosyltransferase; glycosy	91.99
2ps2_A	371	Putative mandelate racemase/muconate lactonizing e	91.99
3tfx_A	259	Orotidine 5'-phosphate decarboxylase; PSI-biology,	91.91
1hg3_A	225	Triosephosphate isomerase; thermostability, tetram	91.87
4af0_A	556	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	91.82
1rvk_A	382	Isomerase/lactonizing enzyme; enolase superfamily,	91.71
3lab_A	217	Putative KDPG (2-keto-3-deoxy-6-phosphogluconate)	91.2
1w0m_A	226	TIM, triosephosphate isomerase; glycolysis, glucon	91.18
4e38_A	232	Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho	91.03
2p8b_A	369	Mandelate racemase/muconate lactonizing enzyme fam	90.96
2qdd_A	378	Mandelate racemase/muconate lactonizing enzyme; en	90.87
1nu5_A	370	Chloromuconate cycloisomerase; enzyme, dehalogenat	90.67
2gl5_A	410	Putative dehydratase protein; structural genomics,	90.67
2pp0_A	398	L-talarate/galactarate dehydratase; enolase superf	90.63
1ypf_A	336	GMP reductase; GUAC, purines, pyrimidines, nucleos	90.5
3paj_A	320	Nicotinate-nucleotide pyrophosphorylase, carboxyl;	90.47
2o56_A	407	Putative mandelate racemase; dehydratase, structur	90.24
2hzg_A	401	Mandelate racemase/muconate lactonizing enzyme/EN	90.01
2qde_A	397	Mandelate racemase/muconate lactonizing enzyme FA	89.95
2gdq_A	382	YITF; mandelate racemase/muconate lactonizing enzy	89.91
2poz_A	392	Putative dehydratase; octamer, structural genomics	89.89
3c2e_A	294	Nicotinate-nucleotide pyrophosphorylase; qprtase,	89.88
2ox4_A	403	Putative mandelate racemase; enolase, dehydratase,	89.73
3mqt_A	394	Mandelate racemase/muconate lactonizing protein; P	89.6
3vkj_A	368	Isopentenyl-diphosphate delta-isomerase; type 2 is	89.52
2zad_A	345	Muconate cycloisomerase; muconate lactonizing enzy	89.48
3mkc_A	394	Racemase; metabolic process, PSI2, NYSGXRC, struct	89.36
3rcy_A	433	Mandelate racemase/muconate lactonizing enzyme-LI	89.33
1sjd_A	368	N-acylamino acid racemase; lyase, isomerase; HET:	89.3
1vc4_A	254	Indole-3-glycerol phosphate synthase; lyase, trypt	89.27
2c6q_A	351	GMP reductase 2; TIM barrel, metal-binding, NADP,	89.1
3go2_A	409	Putative L-alanine-DL-glutamate epimerase; structu	89.09
3tr2_A	239	Orotidine 5'-phosphate decarboxylase; purines, pyr	88.95
3dip_A	410	Enolase; structural genomics, isomerase, PSI-2, pr	88.95
3rr1_A	405	GALD, putative D-galactonate dehydratase; enolase,	88.9
2uv8_G	2051	Fatty acid synthase subunit beta (FAS1); fatty aci	88.87
3sbf_A	401	Mandelate racemase / muconate lactonizing enzyme;	88.81
3jva_A	354	Dipeptide epimerase; enolase superfamily, isomeras	88.62
2qq6_A	410	Mandelate racemase/muconate lactonizing enzyme- li	88.59
3stp_A	412	Galactonate dehydratase, putative; PSI biology, st	88.48
1o4u_A	285	Type II quinolic acid phosphoribosyltransferase; s	88.36
3zen_D	3089	Fatty acid synthase; transferase, mycolic acid bio	88.33
4e5t_A	404	Mandelate racemase / muconate lactonizing enzyme,	88.31
3eez_A	378	Putative mandelate racemase/muconate lactonizing e	88.07
3dg3_A	367	Muconate cycloisomerase; muconate lactonizing enzy	88.07
3ozy_A	389	Putative mandelate racemase; beta-alpha barrel, en	88.04
3i4k_A	383	Muconate lactonizing enzyme; structural genomics,	87.99
3tqv_A	287	Nicotinate-nucleotide pyrophosphorylase; glycosylt	87.92
2oz8_A	389	MLL7089 protein; structural genomics, unknown func	87.83
1tkk_A	366	Similar to chloromuconate cycloisomerase; epimeras	87.78
3vcn_A	425	Mannonate dehydratase; enolase, magnesium binding	87.7
3v3w_A	424	Starvation sensing protein RSPA; enolase, enzyme f	87.35
3sjn_A	374	Mandelate racemase/muconate lactonizing protein; e	87.18
4dxk_A	400	Mandelate racemase / muconate lactonizing enzyme p	87.14
3r4e_A	418	Mandelate racemase/muconate lactonizing enzyme; en	86.99
3bjs_A	428	Mandelate racemase/muconate lactonizing enzyme; en	86.98
4e4u_A	412	Mandalate racemase/muconate lactonizing enzyme; ma	86.9
3ldv_A	255	Orotidine 5'-phosphate decarboxylase; structural g	86.89
1qpo_A	284	Quinolinate acid phosphoribosyl transferase; type	86.84
3ngj_A	239	Deoxyribose-phosphate aldolase; lyase, structural	86.83
2v5b_A	244	Triosephosphate isomerase; TIM, unfolding, monotct	86.77
3tj4_A	372	Mandelate racemase; enolase, dehydratase, enzyme f	86.58
3qja_A	272	IGPS, indole-3-glycerol phosphate synthase; struct	86.49
3krs_A	271	Triosephosphate isomerase; ssgcid, SBRI, emerald b	86.33
3oa3_A	288	Aldolase; structural genomics, seattle structural	85.91
3tji_A	422	Mandelate racemase/muconate lactonizing enzyme, N	85.9
3igs_A	232	N-acetylmannosamine-6-phosphate 2-epimerase 2; ene	85.85
3ddm_A	392	Putative mandelate racemase/muconate lactonizing e	85.85
1tzz_A	392	Hypothetical protein L1841; structural genomics, m	85.68
2hxt_A	441	L-fuconate dehydratase; enolase superfamily, D-ery	85.56
3qst_A	255	Triosephosphate isomerase, putative; TIM barrel; 1	85.53
3q45_A	368	Mandelate racemase/muconate lactonizing enzyme FA	85.52
1p4c_A	380	L(+)-mandelate dehydrogenase; TIM barrel, hydroxy	85.51
1r0m_A	375	N-acylamino acid racemase; isomerase; 1.30A {Deino	85.29
3my9_A	377	Muconate cycloisomerase; structural genomics, PSI-	85.27
1o5x_A	248	TIM, triosephosphate isomerase; 2- phosphoglycerat	85.25
1chr_A	370	Chloromuconate cycloisomerase; 3.00A {Ralstonia eu	85.14
4dwd_A	393	Mandelate racemase/muconate lactonizing enzyme, C	84.94
3gnn_A	298	Nicotinate-nucleotide pyrophosphorylase; decode bi	84.91
2zc8_A	369	N-acylamino acid racemase; octamer, TIM beta/alpha	84.89
3r2g_A	361	Inosine 5'-monophosphate dehydrogenase; structural	84.69
3sgz_A	352	Hydroxyacid oxidase 2; flavoprotein, homology, INH	84.5
3l0g_A	300	Nicotinate-nucleotide pyrophosphorylase; ssgcid, N	84.42
2j27_A	250	Triosephosphate isomerase glycosomal; TIM, 2PG, LO	84.35
3t6c_A	440	RSPA, putative MAND family dehydratase; enolase, m	84.34
1ub3_A	220	Aldolase protein; schiff base, deoxyribose phospha	84.27
2nli_A	368	Lactate oxidase; flavoenzyme, FMN, D-lactate, oxid	83.95
1n7k_A	234	Deoxyribose-phosphate aldolase; A.pernix, tetramer	83.77
3ugv_A	390	Enolase; enzyme function initiative, EFI, lyase; 2	83.37
3r12_A	260	Deoxyribose-phosphate aldolase; TIM beta/alpha-bar	83.24
1gox_A	370	(S)-2-hydroxy-acid oxidase, peroxisomal; oxidoredu	83.18
3q58_A	229	N-acetylmannosamine-6-phosphate 2-epimerase; TIM b	82.81
2i1o_A	398	Nicotinate phosphoribosyltransferase; ZIN ION, zin	82.73
2vxn_A	251	Triosephosphate isomerase; fatty acid biosynthesis	82.57
3p3b_A	392	Mandelate racemase/muconate lactonizing protein; e	82.53
2jgq_A	233	Triosephosphate isomerase; glycolysis, pentose shu	82.36
3sr7_A	365	Isopentenyl-diphosphate delta-isomerase; isopenten	82.3
3ndo_A	231	Deoxyribose-phosphate aldolase; ssgcid, NIH, niaid	81.99
4e4f_A	426	Mannonate dehydratase; magnesium binding, enzyme f	81.85
3mwc_A	400	Mandelate racemase/muconate lactonizing protein; e	81.31
3toy_A	383	Mandelate racemase/muconate lactonizing enzyme FA	81.24
3tsm_A	272	IGPS, indole-3-glycerol phosphate synthase; struct	81.1
3khj_A	361	Inosine-5-monophosphate dehydrogenase; enzyme-inhi	80.3

>4a3u_A NCR, NADH\:flavin oxidoreductase/NADH oxidase; HET: FMN; 1.70A {Zymomonas mobilis}

Probab=99.89  E-value=5.4e-23  Score=159.38  Aligned_cols=84  Identities=43%  Similarity=0.702  Sum_probs=76.2

Q ss_pred             chHHHHHHHHcCCeEEEeCCCCHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHhhCCCCCCCCccccccCCCCCCcccC
Q 046574           11 PHSLLLMRKAFKGTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEFNAPLNKYNRETFYVSDPVVGYTDY   90 (104)
Q Consensus        11 ~~~~~~ir~~~~~pvi~~Ggi~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~~g~~l~~~d~~~~~~~~~~~gy~d~   90 (104)
                      ...+..+|+.+..|||++|+.+++.|+++|++|.+|+|++||++|+|||||+|+++|+|++++|+++||+.+ .+||+||
T Consensus       275 ~~~a~~ik~~~~~~v~~~g~~~~~~ae~~l~~G~aD~V~~gR~~ladPdlp~k~~~g~pl~~~~~~t~y~~~-~~GY~dy  353 (358)
T 4a3u_A          275 PKLSPEIRKVFKPPLVLNQDYTFETAQAALDSGVADAISFGRPFIGNPDLPRRFFEKAPLTKDVIETWYTQT-PKGYTDY  353 (358)
T ss_dssp             CCCHHHHHHHCCSCEEEESSCCHHHHHHHHHHTSCSEEEESHHHHHCTTHHHHHHHTCCCCCCCGGGSSCSS-STTTTCS
T ss_pred             HHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHcCCceEeHhhHHHHhChhHHHHHHhCCCCCCCchhcCCCCC-CCCcCCC
Confidence            356788999998888887777999999999999999999999999999999999999999999999999876 6999999


Q ss_pred             CCCCC
Q 046574           91 PFLDT   95 (104)
Q Consensus        91 p~~~~   95 (104)
                      |++++
T Consensus       354 p~~~e  358 (358)
T 4a3u_A          354 PLLGD  358 (358)
T ss_dssp             CCC--
T ss_pred             CCCCC
Confidence            99874

>4gbu_A NADPH dehydrogenase 1; alpha/beta barrel, enenone reductase, alkene reductase, NADP oxidoreductase, carvone, enenatioselectivity; HET: 0WV 1PE FMN; 1.18A {Saccharomyces pastorianus} PDB: 4ge8_A* 1oya_A* 1oyb_A* 1oyc_A* 3tx9_A* 3rnd_A* 1k02_A* 1k03_A* 1bwk_A* 1bwl_A*

Probab=99.88  E-value=3.6e-23  Score=162.38  Aligned_cols=83  Identities=37%  Similarity=0.689  Sum_probs=74.1

Q ss_pred             HHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHhhCCCCCCCCccccccCCCCCCcccCC
Q 046574           13 SLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEFNAPLNKYNRETFYVSDPVVGYTDYP   91 (104)
Q Consensus        13 ~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~~g~~l~~~d~~~~~~~~~~~gy~d~p   91 (104)
                      .++.+|+.+++|||++|++ +..++++.+.+|.+|+|+|||+||+|||||+|+++|+||+++|+++||+.+ .+||+|||
T Consensus       309 ~~~~ir~~~~~pvi~~G~~~~~~~~~~~~~~~~aDlV~~gR~~iadPdl~~k~~~G~pl~~~d~~tfy~~~-~~Gytdyp  387 (400)
T 4gbu_A          309 SNDFVYSIWKGPVIRAGNFALHPEVVREEVKDKRTLIGYGRFFISNPDLVDRLEKGLPLNKYDRDTFYQMS-AHGYIDYP  387 (400)
T ss_dssp             CSTHHHHHCCSCEEEESSCTTCHHHHHHHTTSTTEEEECCHHHHHCTTHHHHHHHTCCCBCCCGGGSSCSS-STTTTCCC
T ss_pred             HHHHHHHHhCCCEEEeCCCCChHHHHHHHHcCCCeEhHHHHHHHHCcHHHHHHHcCCCCCCCChhhcCCCC-CCCcCCCc
Confidence            4456899999999999999 566666666677899999999999999999999999999999999999976 79999999


Q ss_pred             CCCCc
Q 046574           92 FLDTS   96 (104)
Q Consensus        92 ~~~~~   96 (104)
                      +++++
T Consensus       388 ~~~e~  392 (400)
T 4gbu_A          388 TYEEA  392 (400)
T ss_dssp             CHHHH
T ss_pred             chHHH
Confidence            99865

>4ab4_A Xenobiotic reductase B; oxidoreductase, OLD yellow enzyme; HET: FMN TNL EDO; 1.50A {Pseudomonas putida KT2440}

Probab=99.87  E-value=5.4e-22  Score=154.56  Aligned_cols=88  Identities=42%  Similarity=0.732  Sum_probs=78.1

Q ss_pred             hHHHHHHHHcCCeEEEeCCCCHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHhhCCCCCCCCccccccCCCCCCcccCC
Q 046574           12 HSLLLMRKAFKGTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEFNAPLNKYNRETFYVSDPVVGYTDYP   91 (104)
Q Consensus        12 ~~~~~ir~~~~~pvi~~Ggi~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~~g~~l~~~d~~~~~~~~~~~gy~d~p   91 (104)
                      ..++.||+.+++|||++|++++++|+++|++|.+|+|++||++|+||||++|+++|.+++++|+.+||+.+ .+||+|||
T Consensus       269 ~~~~~ik~~~~iPvi~~Ggit~e~a~~~l~~g~aD~V~iGR~~lanPdl~~k~~~g~~l~~~d~~~~y~~~-~~gy~dyp  347 (362)
T 4ab4_A          269 SIGPLIKEAFGGPYIVNERFDKASANAALASGKADAVAFGVPFIANPDLPARLAADAPLNEAHPETFYGKG-PVGYIDYP  347 (362)
T ss_dssp             CCHHHHHHHHCSCEEEESSCCHHHHHHHHHTTSCSEEEESHHHHHCTTHHHHHHTTCCCCCCCGGGSSSSS-STTTTCSC
T ss_pred             HHHHHHHHHCCCCEEEeCCCCHHHHHHHHHcCCccEEEECHHhHhCcHHHHHHHcCCCCCCCChhhccCCC-CCCccccc
Confidence            35778999999999999999999999999999999999999999999999999999999999999999876 68999999


Q ss_pred             CCCCccccc
Q 046574           92 FLDTSSYVT  100 (104)
Q Consensus        92 ~~~~~~~~~  100 (104)
                      +++++--..
T Consensus       348 ~~~~~~~~~  356 (362)
T 4ab4_A          348 RLKLAAALE  356 (362)
T ss_dssp             CCC------
T ss_pred             ccchhhhhh
Confidence            998775443

>3gka_A N-ethylmaleimide reductase; decode biostructures, ssgcid, niaid, targetdb bupsa00093A, structural genomics; HET: FMN; 2.30A {Burkholderia pseudomallei} SCOP: c.1.4.0

Probab=99.86  E-value=1.1e-21  Score=152.69  Aligned_cols=83  Identities=46%  Similarity=0.849  Sum_probs=77.9

Q ss_pred             hHHHHHHHHcCCeEEEeCCCCHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHhhCCCCCCCCccccccCCCCCCcccCC
Q 046574           12 HSLLLMRKAFKGTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEFNAPLNKYNRETFYVSDPVVGYTDYP   91 (104)
Q Consensus        12 ~~~~~ir~~~~~pvi~~Ggi~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~~g~~l~~~d~~~~~~~~~~~gy~d~p   91 (104)
                      ..++.+|+.+++|||++|++++++|+++|++|.+|+|++||++|+||||++|+++|.+++++|+.+||+.+ .+||+|||
T Consensus       277 ~~~~~ik~~~~iPvi~~Ggit~e~a~~~l~~G~aD~V~iGR~~ladPdl~~k~~~g~~l~~~~~~~~y~~~-~~gy~dyp  355 (361)
T 3gka_A          277 AIGQQLKAAFGGPFIVNENFTLDSAQAALDAGQADAVAWGKLFIANPDLPRRFKLNAPLNEPNAATFYAQG-EVGYTDYP  355 (361)
T ss_dssp             CCHHHHHHHHCSCEEEESSCCHHHHHHHHHTTSCSEEEESHHHHHCTTHHHHHHHTCCCCCCCGGGSSCSS-STTTTCSC
T ss_pred             HHHHHHHHHcCCCEEEeCCCCHHHHHHHHHcCCccEEEECHHhHhCcHHHHHHHhCCCCCCCccccccCCC-CCCcccCh
Confidence            45778999999999999999999999999999999999999999999999999999999999999999876 68999999


Q ss_pred             CCCC
Q 046574           92 FLDT   95 (104)
Q Consensus        92 ~~~~   95 (104)
                      ++++
T Consensus       356 ~~~~  359 (361)
T 3gka_A          356 ALES  359 (361)
T ss_dssp             CCC-
T ss_pred             hccc
Confidence            9874

>2hsa_B 12-oxophytodienoate reductase 3; alpha beta 8 barrel, flavoprotein, jasmonate biosynthesis, oxidoreductase; HET: FMN; 1.50A {Solanum lycopersicum} PDB: 2hs6_A* 3hgs_A* 2hs8_A* 3hgo_A* 1q45_A* 2g5w_A* 2q3o_A*

Probab=99.85  E-value=4.8e-21  Score=150.69  Aligned_cols=82  Identities=60%  Similarity=1.073  Sum_probs=75.5

Q ss_pred             HHHHHHHHcCCeEEEeCCCCHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHhhCCCCCCCCccccc-cCCCCCCcccCC
Q 046574           13 SLLLMRKAFKGTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEFNAPLNKYNRETFY-VSDPVVGYTDYP   91 (104)
Q Consensus        13 ~~~~ir~~~~~pvi~~Ggi~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~~g~~l~~~d~~~~~-~~~~~~gy~d~p   91 (104)
                      .+..+|+.+++|||++|+|++++|+++|++|.+|+|++||++|+||+|++|+++|.+++++++.+|| +.+ .+||+|||
T Consensus       310 ~~~~vk~~~~iPvi~~G~i~~~~a~~~l~~g~aD~V~igR~~l~dP~l~~k~~~g~~l~~~~~~tfy~~~~-~~Gy~dyp  388 (402)
T 2hsa_B          310 LMRTLRNAYQGTFICSGGYTRELGIEAVAQGDADLVSYGRLFISNPDLVMRIKLNAPLNKYNRKTFYTQDP-VVGYTDYP  388 (402)
T ss_dssp             HHHHHHHHCSSCEEEESSCCHHHHHHHHHTTSCSEEEESHHHHHCTTHHHHHHHTCCCCCCCGGGSSCCCS-STTTTCSC
T ss_pred             HHHHHHHHCCCCEEEeCCCCHHHHHHHHHCCCCceeeecHHHHhCchHHHHHHhCCCCCCCChhhcccCCC-CCCcccCc
Confidence            5677999999999999999999999999999999999999999999999999999999999999999 544 68999999


Q ss_pred             CCCC
Q 046574           92 FLDT   95 (104)
Q Consensus        92 ~~~~   95 (104)
                      ++++
T Consensus       389 ~~~~  392 (402)
T 2hsa_B          389 FLQG  392 (402)
T ss_dssp             CC--
T ss_pred             cchh
Confidence            9964

>2r14_A Morphinone reductase; H-tunnelling, flavoprotein, NADH, hydride transfer, oxidoreductase; HET: FMN TXD; 1.40A {Pseudomonas putida} PDB: 3gx9_A* 1gwj_A*

Probab=99.84  E-value=8.6e-21  Score=148.16  Aligned_cols=84  Identities=45%  Similarity=0.788  Sum_probs=78.9

Q ss_pred             hHHHHHHHHcCCeEEEeCCCCHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHhhCCCCCCCCccccccCCCCCCcccCC
Q 046574           12 HSLLLMRKAFKGTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEFNAPLNKYNRETFYVSDPVVGYTDYP   91 (104)
Q Consensus        12 ~~~~~ir~~~~~pvi~~Ggi~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~~g~~l~~~d~~~~~~~~~~~gy~d~p   91 (104)
                      ..++.+|+.+++|||++|+|+++.|+++|++|.+|+|++||++|+||||++|+++|.+++++++.+||+.+ .+||+|||
T Consensus       289 ~~~~~ik~~~~iPvi~~Ggi~~~~a~~~l~~g~aD~V~igR~~l~~P~l~~k~~~g~~l~~~~~~t~y~~~-~~gy~dyp  367 (377)
T 2r14_A          289 GFREQMRQRFKGGLIYCGNYDAGRAQARLDDNTADAVAFGRPFIANPDLPERFRLGAALNEPDPSTFYGGA-EVGYTDYP  367 (377)
T ss_dssp             THHHHHHHHCCSEEEEESSCCHHHHHHHHHTTSCSEEEESHHHHHCTTHHHHHHHTCCCCCCCGGGSSSSS-STTTTCSC
T ss_pred             HHHHHHHHHCCCCEEEECCCCHHHHHHHHHCCCceEEeecHHHHhCchHHHHHHcCCCCCCCCHHhcCCCC-CCCcccCc
Confidence            46778999999999999999999999999999999999999999999999999999999999999999876 68999999


Q ss_pred             CCCCc
Q 046574           92 FLDTS   96 (104)
Q Consensus        92 ~~~~~   96 (104)
                      ++++.
T Consensus       368 ~~~~~  372 (377)
T 2r14_A          368 FLDNG  372 (377)
T ss_dssp             CCCCS
T ss_pred             ccccc
Confidence            99754

>3aty_A Tcoye, prostaglandin F2A synthase; alpha/beta barrel, oxidoreductase, flavin mononucleotide; HET: FMN; 1.70A {Trypanosoma cruzi} PDB: 3atz_A*

Probab=99.84  E-value=9.5e-21  Score=148.07  Aligned_cols=80  Identities=39%  Similarity=0.685  Sum_probs=76.3

Q ss_pred             HHHHHHHcCCeEEEeCCCCHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHhhCCCCCCCCccccccCCCCCCcccCCCC
Q 046574           14 LLLMRKAFKGTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEFNAPLNKYNRETFYVSDPVVGYTDYPFL   93 (104)
Q Consensus        14 ~~~ir~~~~~pvi~~Ggi~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~~g~~l~~~d~~~~~~~~~~~gy~d~p~~   93 (104)
                      ++.+|+.+++|||++|+|++++|+++|++|.+|+|++||++|+||+|++|+++|.+++++++.+||+.+ .+||+|||++
T Consensus       299 ~~~ir~~~~iPvi~~G~it~~~a~~~l~~g~aD~V~igR~~l~~P~l~~k~~~g~~l~~~~~~t~y~~~-~~gy~dyp~~  377 (379)
T 3aty_A          299 VAWVRGSYSGVKISNLRYDFEEADQQIREGKVDAVAFGAKFIANPDLVERAQQNWPLNEPRPETYYTRT-AVGYNDYPTY  377 (379)
T ss_dssp             HHHHHTTCCSCEEEESSCCHHHHHHHHHTTSCSEEEESHHHHHCTTHHHHHHHTCCCCCCCGGGTTCSS-STTTTCCCCT
T ss_pred             HHHHHHHCCCcEEEECCCCHHHHHHHHHcCCCeEEEecHHHHhCcHHHHHHHcCCCCCCCCHhhccCCC-CCCccCCccc
Confidence            778999999999999999999999999999999999999999999999999999999999999999865 6899999998


Q ss_pred             C
Q 046574           94 D   94 (104)
Q Consensus        94 ~   94 (104)
                      +
T Consensus       378 ~  378 (379)
T 3aty_A          378 N  378 (379)
T ss_dssp             T
T ss_pred             C
Confidence            4

>2gou_A Oxidoreductase, FMN-binding; OLD yeallow enzyme, flavoenzyme; HET: BOG FMN PE4; 1.40A {Shewanella oneidensis} PDB: 2gq8_A* 2gq9_A* 2gqa_A*

Probab=99.83  E-value=1.9e-20  Score=145.52  Aligned_cols=82  Identities=37%  Similarity=0.664  Sum_probs=77.4

Q ss_pred             hHHHHHHHHcCCeEEEeCCCCHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHhhCCCCCCCCccccccCCCCCCcccCC
Q 046574           12 HSLLLMRKAFKGTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEFNAPLNKYNRETFYVSDPVVGYTDYP   91 (104)
Q Consensus        12 ~~~~~ir~~~~~pvi~~Ggi~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~~g~~l~~~d~~~~~~~~~~~gy~d~p   91 (104)
                      ..++.+|+.+++|||++|||+++.|+++|++|.+|+|++||++|+||+|++|+++|.+++++++.+||+.+ .+||+|||
T Consensus       283 ~~~~~i~~~~~iPvi~~Ggi~~~~a~~~l~~g~aD~V~igR~~i~~P~l~~~~~~g~~l~~~~~~~~y~~~-~~gy~dyp  361 (365)
T 2gou_A          283 SFKRALREAYQGVLIYAGRYNAEKAEQAINDGLADMIGFGRPFIANPDLPERLRHGYPLAEHVPATLFGGG-EKGLTDYP  361 (365)
T ss_dssp             HHHHHHHHHCCSEEEEESSCCHHHHHHHHHTTSCSEEECCHHHHHCTTHHHHHHHTCCCCCCCGGGSSSSS-STTTTCCC
T ss_pred             HHHHHHHHHCCCcEEEeCCCCHHHHHHHHHCCCcceehhcHHHHhCchHHHHHHcCCCCCCCchhhccCCC-CCCCCCCc
Confidence            45778999999999999999999999999999999999999999999999999999999999999999875 68999999


Q ss_pred             CCC
Q 046574           92 FLD   94 (104)
Q Consensus        92 ~~~   94 (104)
                      +++
T Consensus       362 ~~~  364 (365)
T 2gou_A          362 TYQ  364 (365)
T ss_dssp             CCC
T ss_pred             CcC
Confidence            985

>1vyr_A Pentaerythritol tetranitrate reductase; oxidoreductase, flavoenzyme, explosive degradation, steroid binding; HET: FMN TNF; 0.9A {Enterobacter cloacae} SCOP: c.1.4.1 PDB: 1gvq_A* 1gvr_A* 1gvs_A* 1h50_A* 1h51_A* 1h60_A* 1h61_A* 1h62_A* 1h63_A* 1gvo_A* 2aba_A* 3f03_K* 3kft_A* 3p7y_A* 3p80_A* 3p81_A* 3p62_A* 3p8i_A* 2abb_A* 3p67_A* ...

Probab=99.83  E-value=2.6e-20  Score=144.68  Aligned_cols=81  Identities=40%  Similarity=0.642  Sum_probs=76.5

Q ss_pred             hHHHHHHHHcCCeEEEeCCCCHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHhhCCCCCCCCccccccCCCCCCcccCC
Q 046574           12 HSLLLMRKAFKGTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEFNAPLNKYNRETFYVSDPVVGYTDYP   91 (104)
Q Consensus        12 ~~~~~ir~~~~~pvi~~Ggi~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~~g~~l~~~d~~~~~~~~~~~gy~d~p   91 (104)
                      ..++.+|+.+++|||++|+|++++|+++|++|.+|+|++||++|+||||++|+++|++++++++++||+.+ .+||+|||
T Consensus       284 ~~~~~v~~~~~iPvi~~Ggit~~~a~~~l~~g~aD~V~~gR~~l~~P~~~~~~~~g~~l~~~~~~~~y~~~-~~gy~dyp  362 (364)
T 1vyr_A          284 AFRQKVRERFHGVIIGAGAYTAEKAEDLIGKGLIDAVAFGRDYIANPDLVARLQKKAELNPQRPESFYGGG-AEGYTDYP  362 (364)
T ss_dssp             HHHHHHHHHCCSEEEEESSCCHHHHHHHHHTTSCSEEEESHHHHHCTTHHHHHHHTCCCCCCCGGGSSSSS-STTTTCSC
T ss_pred             HHHHHHHHHCCCCEEEECCcCHHHHHHHHHCCCccEEEECHHHHhChhHHHHHHcCCCCCCCCHHhccCCC-CCCcCCCC
Confidence            46778999999999999999999999999999999999999999999999999999999999999999875 68999999


Q ss_pred             CC
Q 046574           92 FL   93 (104)
Q Consensus        92 ~~   93 (104)
                      ++
T Consensus       363 ~~  364 (364)
T 1vyr_A          363 SL  364 (364)
T ss_dssp             CC
T ss_pred             CC
Confidence            85

>1icp_A OPR1, 12-oxophytodienoate reductase 1; beta-alpha-barrel, protein-FMN-PEG complex, oxidoreductase; HET: FMN 2PE; 1.90A {Solanum lycopersicum} SCOP: c.1.4.1 PDB: 1icq_A* 1ics_A* 3hgr_A* 1vji_A* 2q3r_A*

Probab=99.83  E-value=2.2e-20  Score=145.76  Aligned_cols=83  Identities=75%  Similarity=1.332  Sum_probs=76.4

Q ss_pred             hHHHHHHHHcCCeEEEeCCCCHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHhhCCCCCCCCccccc-cCCCCCCcccC
Q 046574           12 HSLLLMRKAFKGTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEFNAPLNKYNRETFY-VSDPVVGYTDY   90 (104)
Q Consensus        12 ~~~~~ir~~~~~pvi~~Ggi~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~~g~~l~~~d~~~~~-~~~~~~gy~d~   90 (104)
                      ..+..+|+.+++|||++|+|++++|+++|++|.+|+|++||++|+||+|++|+++|.+++++++.+|| +.+ .+||+||
T Consensus       291 ~~~~~vr~~~~iPvi~~G~i~~~~a~~~l~~g~aD~V~~gR~~l~~P~l~~k~~~g~~l~~~~~~~~y~~~~-~~gy~dy  369 (376)
T 1icp_A          291 ESLVPMRKAYKGTFIVAGGYDREDGNRALIEDRADLVAYGRLFISNPDLPKRFELNAPLNKYNRDTFYTSDP-IVGYTDY  369 (376)
T ss_dssp             CCSHHHHHHCCSCEEEESSCCHHHHHHHHHTTSCSEEEESHHHHHCTTHHHHHHHTCCCCCCCGGGSSCCCS-STTTTCS
T ss_pred             HHHHHHHHHcCCCEEEeCCCCHHHHHHHHHCCCCcEEeecHHHHhCccHHHHHHcCCCCCCCCHHHcccCCC-CCCcccC
Confidence            34578999999999999999999999999999999999999999999999999999999999999999 544 6899999


Q ss_pred             CCCCC
Q 046574           91 PFLDT   95 (104)
Q Consensus        91 p~~~~   95 (104)
                      |++++
T Consensus       370 p~~~~  374 (376)
T 1icp_A          370 PFLET  374 (376)
T ss_dssp             CCCC-
T ss_pred             ccccc
Confidence            99965

>3tjl_A NADPH dehydrogenase; OLD yellow enzyme, flavin mononucleotide, TIM barrel, NADPH oxidoreductase, enone reductase; HET: FMN; 1.50A {Scheffersomyces stipitis cbs 6054} PDB: 3upw_A* 4df2_A*

Probab=99.81  E-value=1.9e-20  Score=147.99  Aligned_cols=82  Identities=29%  Similarity=0.527  Sum_probs=74.1

Q ss_pred             HHHHHHHHcCCeEEEeCCC-CHHHHHHHHHc---CCCcEEecchHHhhCCcHHHHHhhCCCCCCCCccccccCCCCCCcc
Q 046574           13 SLLLMRKAFKGTFLVAGGY-DREDGNKAIAE---GRADLVVYGRFFLANPDLPRRFEFNAPLNKYNRETFYVSDPVVGYT   88 (104)
Q Consensus        13 ~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~---g~~DlVa~gR~~lanPdl~~ri~~g~~l~~~d~~~~~~~~~~~gy~   88 (104)
                      .++.+|+.+++|||++|+| +.++|++++++   |.+|+|+|||++|+||||++|+++|.+++++|+++||+++ ..||+
T Consensus       304 ~~~~ir~~~~~PvI~~Ggi~~~~dA~~~i~~~~~g~aDlVa~GR~~iaNPdL~~ri~~g~~l~~~d~~tfy~~~-~~GY~  382 (407)
T 3tjl_A          304 DNEFVSKIWKGVILKAGNYSYDAPEFKTLKEDIADKRTLVGFSRYFTSNPNLVWKLRDGIDLVPYDRNTFYSDN-NYGYN  382 (407)
T ss_dssp             CSHHHHHHCCSEEEEESCGGGGTTTTHHHHHHHTTSSEEEECSHHHHHCTTHHHHHHHTCCBCCCCGGGSSCSS-STTTG
T ss_pred             HHHHHHHHhCCCEEecCCCCCHHHHHHHHHhhccCCCeEEEeChhhhhCchHHHHHHcCCCCCCCccccccCCC-CCCcc
Confidence            4567999999999999999 56657777776   8899999999999999999999999999999999999876 57999


Q ss_pred             cCCCCCC
Q 046574           89 DYPFLDT   95 (104)
Q Consensus        89 d~p~~~~   95 (104)
                      |||++++
T Consensus       383 dyp~~~~  389 (407)
T 3tjl_A          383 TFSMDSE  389 (407)
T ss_dssp             GGGSCGG
T ss_pred             cCcchhh
Confidence            9999976

>3gr7_A NADPH dehydrogenase; flavin, FMN, beta-alpha-barrel, oxidoreductase, flavoprotein; HET: FMN; 2.30A {Geobacillus kaustophilus} PDB: 3gr8_A*

Probab=99.44  E-value=2.7e-13  Score=104.35  Aligned_cols=63  Identities=24%  Similarity=0.192  Sum_probs=57.7

Q ss_pred             hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHhhCCCCCCCC
Q 046574           12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEFNAPLNKYN   74 (104)
Q Consensus        12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~~g~~l~~~d   74 (104)
                      ..++.||+.+++|||++||| ++++|+++|++|.+|+|++||++|+||||++|++++.+.....
T Consensus       267 ~~~~~ik~~~~iPVi~~GgI~s~e~a~~~L~~G~aD~V~iGR~~lanPdl~~ki~~~l~~~~~~  330 (340)
T 3gr7_A          267 PFAELIRREADIPTGAVGLITSGWQAEEILQNGRADLVFLGRELLRNPYWPYAAARELGAKISA  330 (340)
T ss_dssp             HHHHHHHHHTTCCEEEESSCCCHHHHHHHHHTTSCSEEEECHHHHHCTTHHHHHHHHTTCCCCC
T ss_pred             HHHHHHHHHcCCcEEeeCCCCCHHHHHHHHHCCCeeEEEecHHHHhCchHHHHHHHHCCCCCCC
Confidence            46778999999999999999 9999999999999999999999999999999999998876433

>3hgj_A Chromate reductase; TIM barrel, oxidoreductase; HET: FMN; 2.00A {Thermus scotoductus} SCOP: c.1.4.0 PDB: 3hf3_A*

Probab=99.39  E-value=8.7e-13  Score=101.59  Aligned_cols=61  Identities=25%  Similarity=0.250  Sum_probs=56.4

Q ss_pred             hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHhhCCCCCC
Q 046574           12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEFNAPLNK   72 (104)
Q Consensus        12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~~g~~l~~   72 (104)
                      ..++.+|+.+++|||++|+| ++++|+++|++|.+|+|++||++|+||||++|++.+.+...
T Consensus       278 ~~~~~ir~~~~iPVi~~Ggi~t~e~a~~~l~~G~aD~V~iGR~~lanPdl~~k~~~~l~~~~  339 (349)
T 3hgj_A          278 PFADAVRKRVGLRTGAVGLITTPEQAETLLQAGSADLVLLGRVLLRDPYFPLRAAKALGVAP  339 (349)
T ss_dssp             HHHHHHHHHHCCEEEECSSCCCHHHHHHHHHTTSCSEEEESTHHHHCTTHHHHHHHHTTCCC
T ss_pred             HHHHHHHHHcCceEEEECCCCCHHHHHHHHHCCCceEEEecHHHHhCchHHHHHHHHCCCCC
Confidence            46778999999999999999 99999999999999999999999999999999999887653

>3kru_A NADH:flavin oxidoreductase/NADH oxidase; homotetramer, dimer of dimers, TIM barrel, thermophilic, OLD enzyme; HET: FMN; 1.60A {Thermoanaerobacter pseudethanolicus AT} SCOP: c.1.4.0 PDB: 3krz_A*

Probab=99.38  E-value=5.9e-13  Score=102.85  Aligned_cols=56  Identities=23%  Similarity=0.207  Sum_probs=52.5

Q ss_pred             hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHhhCC
Q 046574           12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEFNA   68 (104)
Q Consensus        12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~~g~   68 (104)
                      ..++.+|+.+++|||++|+| ++++|+++|++|.+|+|++||++|+||||++|++ |.
T Consensus       267 ~~~~~ir~~~~iPVi~~Ggi~t~e~Ae~~l~~G~aD~V~iGR~~lanPdl~~k~~-~~  323 (343)
T 3kru_A          267 KYAETIKKRCNIKTSAVGLITTQELAEEILSNERADLVALGRELLRNPYWVLHTY-TS  323 (343)
T ss_dssp             HHHHHHHHHHTCEEEEESSCCCHHHHHHHHHTTSCSEEEESHHHHHCTTHHHHTC-SS
T ss_pred             hHHHHHHHhcCcccceeeeeeHHHHHHHHHhchhhHHHHHHHHHhcCCeEEEEEe-cc
Confidence            46778999999999999999 8999999999999999999999999999999999 54

>1z41_A YQJM, probable NADH-dependent flavin oxidoreductase YQJ; FMN, beta-alpha-barrel; HET: FMN; 1.30A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1z42_A* 1z44_A* 1z48_A*

Probab=99.35  E-value=1.4e-12  Score=99.85  Aligned_cols=59  Identities=22%  Similarity=0.217  Sum_probs=55.3

Q ss_pred             hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHhhCCCC
Q 046574           12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEFNAPL   70 (104)
Q Consensus        12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~~g~~l   70 (104)
                      ..++.+++.+++|||++||| ++++|+++|++|.+|+|++||++|+||||++|+++|.+-
T Consensus       267 ~~~~~ir~~~~iPVi~~Ggi~s~~~a~~~l~~G~aD~V~iGR~~i~nPdl~~ki~~~~~~  326 (338)
T 1z41_A          267 SFAEKIREQADMATGAVGMITDGSMAEEILQNGRADLIFIGRELLRDPFFARTAAKQLNT  326 (338)
T ss_dssp             HHHHHHHHHHCCEEEECSSCCSHHHHHHHHHTTSCSEEEECHHHHHCTTHHHHHHHHTTC
T ss_pred             HHHHHHHHHCCCCEEEECCCCCHHHHHHHHHcCCceEEeecHHHHhCchHHHHHHcCCCc
Confidence            46678999999999999999 999999999999999999999999999999999999864

>3l5l_A Xenobiotic reductase A; TIM barrel, oxidoreductase; HET: BU3 FMN; 1.03A {Pseudomonas putida} SCOP: c.1.4.0 PDB: 3l5m_A* 3n19_B* 3n16_A* 3l68_A* 3l67_A* 3l65_A* 3l66_A* 3n14_A* 2h8z_A* 2h90_A* 2h8x_A*

Probab=99.34  E-value=1.8e-12  Score=100.41  Aligned_cols=59  Identities=22%  Similarity=0.184  Sum_probs=55.2

Q ss_pred             hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHhhCCCC
Q 046574           12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEFNAPL   70 (104)
Q Consensus        12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~~g~~l   70 (104)
                      ..++.+|+.+++|||++||| ++++|+++|++|.+|+|++||++|+||||++|++.+..+
T Consensus       285 ~~~~~ir~~~~iPVi~~GgI~s~e~a~~~l~~G~aD~V~iGR~~lanPdl~~k~~~~lg~  344 (363)
T 3l5l_A          285 PIAERVRREAKLPVTSAWGFGTPQLAEAALQANQLDLVSVGRAHLADPHWAYFAAKELGV  344 (363)
T ss_dssp             HHHHHHHHHHTCCEEECSSTTSHHHHHHHHHTTSCSEEECCHHHHHCTTHHHHHHHHTTC
T ss_pred             HHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHCCCccEEEecHHHHhCchHHHHHHHHcCC
Confidence            46778999999999999999 899999999999999999999999999999999998764

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}

Probab=99.33  E-value=8.2e-13  Score=108.42  Aligned_cols=58  Identities=19%  Similarity=0.217  Sum_probs=54.4

Q ss_pred             hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHhhCCC
Q 046574           12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEFNAP   69 (104)
Q Consensus        12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~~g~~   69 (104)
                      ..+..+|+.+++|||++|+| +++.|+++|++|.+|+|++||++|+||||++|+++|++
T Consensus       284 ~~~~~i~~~~~~pvi~~G~i~~~~~a~~~l~~g~~d~v~~gR~~~~~P~~~~~~~~g~~  342 (690)
T 3k30_A          284 EFVAGLKKLTTKPVVGVGRFTSPDAMVRQIKAGILDLIGAARPSIADPFLPNKIRDGRL  342 (690)
T ss_dssp             HHHTTSGGGCSSCEEECSCCCCHHHHHHHHHTTSCSEEEESHHHHHCTTHHHHHHTTCG
T ss_pred             HHHHHHHHHcCCeEEEeCCCCCHHHHHHHHHCCCcceEEEcHHhHhCccHHHHHHcCCc
Confidence            45667889999999999999 89999999999999999999999999999999999984

>3l5a_A NADH/flavin oxidoreductase/NADH oxidase; OLD yellow enzyme family, OYE-like FMN-binding domain, TIM B oxidoreductase; HET: PGE; 1.65A {Staphylococcus aureus}

Probab=99.30  E-value=2.6e-12  Score=101.57  Aligned_cols=56  Identities=20%  Similarity=0.342  Sum_probs=52.1

Q ss_pred             hHHHHHHHHcC--CeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHhhCCC
Q 046574           12 HSLLLMRKAFK--GTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEFNAP   69 (104)
Q Consensus        12 ~~~~~ir~~~~--~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~~g~~   69 (104)
                      ..++.||+.++  +|||++||| ++++|+++|++  +|+|++||++|+||||++|+++|++
T Consensus       306 ~~a~~Ik~~v~~~iPVI~~GgI~t~e~Ae~~L~~--aDlVaiGR~~IanPdlv~ki~~G~~  364 (419)
T 3l5a_A          306 PVNQIVYEHLAGRIPLIASGGINSPESALDALQH--ADMVGMSSPFVTEPDFVHKLAEQRP  364 (419)
T ss_dssp             BHHHHHHHHHTTSSCEEECSSCCSHHHHHHHGGG--CSEEEESTHHHHCTTHHHHHHTTCG
T ss_pred             HHHHHHHHHcCCCCeEEEECCCCCHHHHHHHHHh--CCcHHHHHHHHHCcHHHHHHHcCCc
Confidence            46788999994  699999999 99999999998  9999999999999999999999984

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*

Probab=99.29  E-value=2.7e-12  Score=106.23  Aligned_cols=59  Identities=27%  Similarity=0.332  Sum_probs=55.0

Q ss_pred             hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHhhCCCC
Q 046574           12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEFNAPL   70 (104)
Q Consensus        12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~~g~~l   70 (104)
                      ..+..+|+.+++|||++|+| ++++|+++|++|.+|+|++||++|+||||++|+++|++.
T Consensus       281 ~~~~~i~~~~~~pvi~~G~i~~~~~a~~~l~~g~aD~V~~gR~~l~~P~~~~~~~~g~~~  340 (729)
T 1o94_A          281 PWVKLVKQVSKKPVLGVGRYTDPEKMIEIVTKGYADIIGCARPSIADPFLPQKVEQGRYD  340 (729)
T ss_dssp             HHHHHHHTTCSSCEECCSCCCCHHHHHHHHHTTSCSBEEESHHHHHCTTHHHHHHTTCGG
T ss_pred             HHHHHHHHHCCCEEEEeCCCCCHHHHHHHHHCCCCCEEEeCchhhcCchHHHHHHcCCcc
Confidence            45678999999999999999 899999999999999999999999999999999999753

>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1

Probab=99.22  E-value=1.1e-11  Score=101.34  Aligned_cols=58  Identities=17%  Similarity=0.253  Sum_probs=54.5

Q ss_pred             hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHhhCCC
Q 046574           12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEFNAP   69 (104)
Q Consensus        12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~~g~~   69 (104)
                      ..++.+|+.+++|||++|+| +++.|+++|++|.+|+|++||++|+||||++|+++|++
T Consensus       270 ~~~~~i~~~~~iPvi~~Ggi~~~~~a~~~l~~g~aD~V~~gR~~l~~P~l~~k~~~g~~  328 (671)
T 1ps9_A          270 WVTRKLKGHVSLPLVTTNRINDPQVADDILSRGDADMVSMARPFLADAELLSKAQSGRA  328 (671)
T ss_dssp             HHHHHHTTSCSSCEEECSSCCSHHHHHHHHHTTSCSEEEESTHHHHCTTHHHHHHTTCG
T ss_pred             HHHHHHHHhcCceEEEeCCCCCHHHHHHHHHcCCCCEEEeCHHHHhCcHHHHHHHcCCC
Confidence            45677888899999999999 99999999999999999999999999999999999985

>1f76_A Dihydroorotate dehydrogenase; monomer, alpha-beta-barrel, FMN binding domain, orotate complex, oxidoreductase; HET: MSE FMN ORO; 2.50A {Bacteria} SCOP: c.1.4.1

Probab=98.96  E-value=7.2e-10  Score=84.14  Aligned_cols=55  Identities=20%  Similarity=0.227  Sum_probs=49.9

Q ss_pred             hHHHHHHHHc--CCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhh-CCcHHHHHhhC
Q 046574           12 HSLLLMRKAF--KGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLA-NPDLPRRFEFN   67 (104)
Q Consensus        12 ~~~~~ir~~~--~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~la-nPdl~~ri~~g   67 (104)
                      ..+..+++.+  ++|||++||| ++++|+++|..| +|+|.+||++|. ||+|++++++|
T Consensus       277 ~~i~~i~~~~~~~ipVi~~GGI~~~~da~~~l~~G-Ad~V~igr~~l~~~P~~~~~i~~~  335 (336)
T 1f76_A          277 EIIRRLSLELNGRLPIIGVGGIDSVIAAREKIAAG-ASLVQIYSGFIFKGPPLIKEIVTH  335 (336)
T ss_dssp             HHHHHHHHHHTTSSCEEEESSCCSHHHHHHHHHHT-CSEEEESHHHHHHCHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCCCEEEECCCCCHHHHHHHHHCC-CCEEEeeHHHHhcCcHHHHHHHhh
Confidence            3456788888  6899999999 999999999999 999999999999 99999999875

>3b0p_A TRNA-dihydrouridine synthase; TIM barrel, oxidoreductase; HET: FMN; 1.70A {Thermus thermophilus} PDB: 3b0u_X* 3b0v_C*

Probab=98.85  E-value=2.7e-09  Score=82.16  Aligned_cols=55  Identities=20%  Similarity=0.266  Sum_probs=49.7

Q ss_pred             hHHHHHHHHc-CCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHhhCC
Q 046574           12 HSLLLMRKAF-KGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEFNA   68 (104)
Q Consensus        12 ~~~~~ir~~~-~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~~g~   68 (104)
                      .....+++.+ ++|||++||| |+++++++++ | +|+|.+||+++.||+|+.+++++.
T Consensus       186 ~~i~~ik~~~~~iPVianGgI~s~eda~~~l~-G-aD~V~iGRa~l~~P~l~~~i~~~l  242 (350)
T 3b0p_A          186 DWVHRLKGDFPQLTFVTNGGIRSLEEALFHLK-R-VDGVMLGRAVYEDPFVLEEADRRV  242 (350)
T ss_dssp             HHHHHHHHHCTTSEEEEESSCCSHHHHHHHHT-T-SSEEEECHHHHHCGGGGTTHHHHT
T ss_pred             HHHHHHHHhCCCCeEEEECCcCCHHHHHHHHh-C-CCEEEECHHHHhCcHHHHHHHHHh
Confidence            4567889998 8999999999 9999999997 7 999999999999999999998643

>2e6f_A Dihydroorotate dehydrogenase; chagas disease, pyrimidine biosynthesis, fumarate reductase, energy metabolism, redox homeostasis, flavoprotein; HET: FMN OXC; 1.26A {Trypanosoma cruzi} PDB: 2e6a_A* 2e6d_A* 2e68_A* 2djl_A* 2djx_A* 3c3n_A* 2b4g_A* 3c61_A* 3mhu_A* 3mjy_A*

Probab=98.80  E-value=7.5e-09  Score=77.68  Aligned_cols=56  Identities=21%  Similarity=0.260  Sum_probs=50.9

Q ss_pred             hHHHHHHHHc-CCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhh-CCcHHHHHhhCC
Q 046574           12 HSLLLMRKAF-KGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLA-NPDLPRRFEFNA   68 (104)
Q Consensus        12 ~~~~~ir~~~-~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~la-nPdl~~ri~~g~   68 (104)
                      .....+++.+ ++|||++||| |+++|.+++..| +|+|.+||+++. +|+|+++++++.
T Consensus       233 ~~i~~v~~~~~~ipvi~~GGI~~~~da~~~l~~G-Ad~V~ig~~~l~~~p~~~~~i~~~l  291 (314)
T 2e6f_A          233 ANVNAFYRRCPDKLVFGCGGVYSGEDAFLHILAG-ASMVQVGTALQEEGPGIFTRLEDEL  291 (314)
T ss_dssp             HHHHHHHHHCTTSEEEEESSCCSHHHHHHHHHHT-CSSEEECHHHHHHCTTHHHHHHHHH
T ss_pred             HHHHHHHHhcCCCCEEEECCCCCHHHHHHHHHcC-CCEEEEchhhHhcCcHHHHHHHHHH
Confidence            3556788888 7899999999 999999999999 899999999997 999999999875

>1ep3_A Dihydroorotate dehydrogenase B (PYRD subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ep2_A* 1ep1_A*

Probab=98.79  E-value=7.5e-09  Score=77.04  Aligned_cols=56  Identities=16%  Similarity=0.146  Sum_probs=50.5

Q ss_pred             hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHhhCC
Q 046574           12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEFNA   68 (104)
Q Consensus        12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~~g~   68 (104)
                      .....+++.+++|||++||| +++++.+++..| +|+|.+||+++.+|+++.+++++.
T Consensus       231 ~~i~~i~~~~~ipvia~GGI~~~~d~~~~l~~G-Ad~V~vg~~~l~~p~~~~~i~~~l  287 (311)
T 1ep3_A          231 KLIHQVAQDVDIPIIGMGGVANAQDVLEMYMAG-ASAVAVGTANFADPFVCPKIIDKL  287 (311)
T ss_dssp             HHHHHHHTTCSSCEEECSSCCSHHHHHHHHHHT-CSEEEECTHHHHCTTHHHHHHHHH
T ss_pred             HHHHHHHHhcCCCEEEECCcCCHHHHHHHHHcC-CCEEEECHHHHcCcHHHHHHHHHH
Confidence            34556777778899999999 999999999999 999999999999999999998865

>1vhn_A Putative flavin oxidoreducatase; structural genomics, unknown function; HET: FMN; 1.59A {Thermotoga maritima} SCOP: c.1.4.1

Probab=98.78  E-value=3e-09  Score=80.52  Aligned_cols=52  Identities=21%  Similarity=0.305  Sum_probs=45.9

Q ss_pred             HHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHhh
Q 046574           13 SLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEF   66 (104)
Q Consensus        13 ~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~~   66 (104)
                      .+..+++  ++|||++||| |+++++++++++.+|+|++||+++.||+|+.+++.
T Consensus       176 ~i~~i~~--~ipVi~~GgI~s~~da~~~l~~~gad~V~iGR~~l~~P~l~~~~~~  228 (318)
T 1vhn_A          176 ALSVLEK--RIPTFVSGDIFTPEDAKRALEESGCDGLLVARGAIGRPWIFKQIKD  228 (318)
T ss_dssp             GGGGSCC--SSCEEEESSCCSHHHHHHHHHHHCCSEEEESGGGTTCTTHHHHHHH
T ss_pred             HHHHHHc--CCeEEEECCcCCHHHHHHHHHcCCCCEEEECHHHHhCcchHHHHHH
Confidence            3344555  7899999999 99999999996559999999999999999999988

>1jub_A Dihydroorotate dehydrogenase A; homodimer, alpha-beta barrel, flavoprotein, mutant enzyme, oxidoreductase; HET: FMN; 1.40A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ovd_A* 1jue_A* 1dor_A* 2bsl_A* 2bx7_A* 2dor_A* 1jqv_A* 1jrb_A* 1jrc_A* 1jqx_A*

Probab=98.75  E-value=1.4e-08  Score=76.10  Aligned_cols=55  Identities=15%  Similarity=0.206  Sum_probs=49.9

Q ss_pred             HHHHHHHHc--CCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhh-CCcHHHHHhhCC
Q 046574           13 SLLLMRKAF--KGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLA-NPDLPRRFEFNA   68 (104)
Q Consensus        13 ~~~~ir~~~--~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~la-nPdl~~ri~~g~   68 (104)
                      ....+++.+  ++|||++||| ++++|.+++..| +|+|.+||+++. +|+++++++++.
T Consensus       231 ~i~~v~~~~~~~ipvi~~GGI~~~~da~~~l~~G-Ad~V~vg~~~l~~~p~~~~~i~~~l  289 (311)
T 1jub_A          231 NVRAFYTRLKPEIQIIGTGGIETGQDAFEHLLCG-ATMLQIGTALHKEGPAIFDRIIKEL  289 (311)
T ss_dssp             HHHHHHTTSCTTSEEEEESSCCSHHHHHHHHHHT-CSEEEECHHHHHHCTHHHHHHHHHH
T ss_pred             HHHHHHHhcCCCCCEEEECCCCCHHHHHHHHHcC-CCEEEEchHHHhcCcHHHHHHHHHH
Confidence            556678888  7899999999 999999999999 899999999997 999999999875

>1tv5_A Dhodehase, dihydroorotate dehydrogenase homolog, mitochondri, dihydroorotate; alpha-beta barrel, TIM barrel, oxidoreductase; HET: A26 FMN ORO N8E; 2.40A {Plasmodium falciparum} SCOP: c.1.4.1

Probab=98.61  E-value=5.2e-08  Score=77.57  Aligned_cols=55  Identities=13%  Similarity=0.088  Sum_probs=50.3

Q ss_pred             HHHHHHHHc--CCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhh-CCcHHHHHhhCC
Q 046574           13 SLLLMRKAF--KGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLA-NPDLPRRFEFNA   68 (104)
Q Consensus        13 ~~~~ir~~~--~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~la-nPdl~~ri~~g~   68 (104)
                      .+..+++.+  ++|||++||| |+++|.+.|..| +|+|.+||+++. +|+|+.+++++.
T Consensus       362 ~i~~v~~~v~~~iPVIg~GGI~s~~DA~e~l~aG-Ad~Vqigrall~~gP~l~~~i~~~l  420 (443)
T 1tv5_A          362 FICEMYNYTNKQIPIIASGGIFSGLDALEKIEAG-ASVCQLYSCLVFNGMKSAVQIKREL  420 (443)
T ss_dssp             HHHHHHHHTTTCSCEEEESSCCSHHHHHHHHHTT-EEEEEESHHHHHHGGGHHHHHHHHH
T ss_pred             HHHHHHHHcCCCCcEEEECCCCCHHHHHHHHHcC-CCEEEEcHHHHhcChHHHHHHHHHH
Confidence            456788888  6899999999 999999999999 999999999997 999999999875

>3tdn_A FLR symmetric alpha-beta TIM barrel; symmetric superfold, de novo protein; 1.40A {Synthetic construct} PDB: 3og3_A 3tdm_A

Probab=98.60  E-value=8.6e-08  Score=69.63  Aligned_cols=54  Identities=22%  Similarity=0.235  Sum_probs=49.4

Q ss_pred             hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHhh
Q 046574           12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEF   66 (104)
Q Consensus        12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~~   66 (104)
                      ..++.+++.+++|||++||| ++++++++++.| +|.|.+||.++.||+|+.++.+
T Consensus        69 ~~i~~i~~~~~ipvi~~Ggi~~~~~~~~~l~~G-ad~V~ig~~~l~dp~~~~~~~~  123 (247)
T 3tdn_A           69 EMIRFVRPLTTLPIIASGGAGKMEHFLEAFLRG-ADKVSINTAAVENPSLITQIAQ  123 (247)
T ss_dssp             HHHHHHGGGCCSCEEEESCCCSHHHHHHHHHTT-CSEECCSHHHHHCTHHHHHHHH
T ss_pred             HHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcC-CCeeehhhHHhhChHHHHHHHH
Confidence            46677888888999999999 999999999998 9999999999999999988875

>3oix_A Putative dihydroorotate dehydrogenase; dihydrooro oxidase; TIM barrel, oxidoreductase; HET: MLY FMN; 2.40A {Streptococcus mutans}

Probab=98.44  E-value=3.2e-07  Score=70.91  Aligned_cols=55  Identities=20%  Similarity=0.262  Sum_probs=49.5

Q ss_pred             HHHHHHHHc--CCeEEEeCCC-CHHHHHHHHHcCCCcEEecchH-HhhCCcHHHHHhhCC
Q 046574           13 SLLLMRKAF--KGTFLVAGGY-DREDGNKAIAEGRADLVVYGRF-FLANPDLPRRFEFNA   68 (104)
Q Consensus        13 ~~~~ir~~~--~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~-~lanPdl~~ri~~g~   68 (104)
                      ....+++.+  ++|||++||| |+++|.+.+..| +|+|.+||+ ++.+|.|+.+++++.
T Consensus       264 ~v~~i~~~~~~~ipIIg~GGI~s~~da~~~l~aG-Ad~V~igra~~~~gP~~~~~i~~~L  322 (345)
T 3oix_A          264 NVHAFYKRLNPSIQIIGTGGVXTGRDAFEHILCG-ASMVQIGTALHQEGPQIFKRITKEL  322 (345)
T ss_dssp             HHHHHHTTSCTTSEEEEESSCCSHHHHHHHHHHT-CSEEEESHHHHHHCTHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCCcEEEECCCCChHHHHHHHHhC-CCEEEEChHHHhcChHHHHHHHHHH
Confidence            456788888  5799999999 999999999999 899999999 789999999998865

>4ef8_A Dihydroorotate dehydrogenase; phenyl isothiocyanate, PYRD, oxidoreductase, oxidoreductase-oxidor inhibitor complex; HET: FMN; 1.56A {Leishmania major} PDB: 3gye_A* 3gz3_A* 4ef9_A* 3tro_A* 3tjx_A*

Probab=98.40  E-value=4.2e-07  Score=70.48  Aligned_cols=55  Identities=18%  Similarity=0.260  Sum_probs=49.0

Q ss_pred             HHHHHHHHc-CCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhC-CcHHHHHhhCC
Q 046574           13 SLLLMRKAF-KGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLAN-PDLPRRFEFNA   68 (104)
Q Consensus        13 ~~~~ir~~~-~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lan-Pdl~~ri~~g~   68 (104)
                      ....+++.. ++|||++||| ++++|.+.+..| +|+|.+||+++.| |.++.++.++.
T Consensus       267 ~i~~v~~~~~~ipII~~GGI~s~~da~~~l~aG-Ad~V~vgra~l~~GP~~~~~i~~~l  324 (354)
T 4ef8_A          267 NINAFYRRCPGKLIFGCGGVYTGEDAFLHVLAG-ASMVQVGTALQEEGPSIFERLTSEL  324 (354)
T ss_dssp             HHHHHHHHCTTSEEEEESCCCSHHHHHHHHHHT-EEEEEECHHHHHHCTTHHHHHHHHH
T ss_pred             HHHHHHHhCCCCCEEEECCcCCHHHHHHHHHcC-CCEEEEhHHHHHhCHHHHHHHHHHH
Confidence            345677776 5799999999 999999999998 8999999999999 99999998865

>3zwt_A Dihydroorotate dehydrogenase (quinone), mitochond; oxidoreductase; HET: FMN ORO KFZ; 1.55A {Homo sapiens} PDB: 1d3h_A* 2bxv_A* 2prh_A* 2prl_A* 2prm_A* 3f1q_A* 3fj6_A* 3fjl_A* 3g0u_A* 3g0x_A* 3zws_A* 1d3g_A* 3u2o_A* 2fpv_A* 2fpt_A* 2fpy_A* 2fqi_A* 3kvl_A* 3kvk_A* 3kvj_A* ...

Probab=98.38  E-value=6.4e-07  Score=69.62  Aligned_cols=56  Identities=18%  Similarity=0.191  Sum_probs=49.7

Q ss_pred             hHHHHHHHHc--CCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHh-hCCcHHHHHhhCC
Q 046574           12 HSLLLMRKAF--KGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFL-ANPDLPRRFEFNA   68 (104)
Q Consensus        12 ~~~~~ir~~~--~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~l-anPdl~~ri~~g~   68 (104)
                      +....+++.+  ++|||++||| |+++|.+.+..| +|+|.+||+++ .+|.++.++.++.
T Consensus       286 ~~v~~i~~~v~~~ipvI~~GGI~s~~da~~~l~~G-Ad~V~vgra~l~~gP~~~~~i~~~l  345 (367)
T 3zwt_A          286 QTIREMYALTQGRVPIIGVGGVSSGQDALEKIRAG-ASLVQLYTALTFWGPPVVGKVKREL  345 (367)
T ss_dssp             HHHHHHHHHTTTCSCEEEESSCCSHHHHHHHHHHT-CSEEEESHHHHHHCTHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCceEEEECCCCCHHHHHHHHHcC-CCEEEECHHHHhcCcHHHHHHHHHH
Confidence            3556788888  6799999999 999999999999 89999999997 5799999998865

>3i65_A Dihydroorotate dehydrogenase homolog, mitochondrial; triazolopyrimidine,inhibitor, DSM1, FAD, flavoprotein, membrane, mitochondrion; HET: JZ8 FMN ORO LDA; 2.00A {Plasmodium falciparum 3D7} PDB: 3i68_A* 3i6r_A* 3o8a_A* 3sfk_A*

Probab=98.36  E-value=4.3e-07  Score=71.88  Aligned_cols=55  Identities=15%  Similarity=0.108  Sum_probs=49.7

Q ss_pred             HHHHHHHHc--CCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhC-CcHHHHHhhCC
Q 046574           13 SLLLMRKAF--KGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLAN-PDLPRRFEFNA   68 (104)
Q Consensus        13 ~~~~ir~~~--~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lan-Pdl~~ri~~g~   68 (104)
                      ....+++.+  ++|||++||| |+++|.+.+..| +|+|.+||+++.+ |.++.++.++.
T Consensus       334 ~I~~v~~~v~~~iPIIg~GGI~s~eDa~e~l~aG-Ad~VqIgra~l~~GP~~~~~i~~~L  392 (415)
T 3i65_A          334 FICEMYNYTNKQIPIIASGGIFSGLDALEKIEAG-ASVCQLYSCLVFNGMKSAVQIKREL  392 (415)
T ss_dssp             HHHHHHHHTTTCSCEEECSSCCSHHHHHHHHHHT-EEEEEESHHHHHHGGGHHHHHHHHH
T ss_pred             HHHHHHHHhCCCCCEEEECCCCCHHHHHHHHHcC-CCEEEEcHHHHhcCHHHHHHHHHHH
Confidence            456678888  5799999999 999999999999 8999999999998 99999998875

>2z6i_A Trans-2-enoyl-ACP reductase II; fatty acid synthesis, antibiotics, oxidoreductase, flavoprotein; HET: FMN; 1.70A {Streptococcus pneumoniae} PDB: 2z6j_A*

Probab=98.26  E-value=1.6e-06  Score=65.80  Aligned_cols=57  Identities=19%  Similarity=0.221  Sum_probs=50.0

Q ss_pred             hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHH------HHHhhCCC
Q 046574           12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLP------RRFEFNAP   69 (104)
Q Consensus        12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~------~ri~~g~~   69 (104)
                      ..+..+++.+++|||++||| +++.+.+++..| +|.|.+||.|+.+|+++      +++..+..
T Consensus       152 ~ll~~i~~~~~iPViaaGGI~~~~~~~~al~~G-AdgV~vGs~~l~~~e~~~~~~~k~~~~~~~~  215 (332)
T 2z6i_A          152 TLVRQVATAISIPVIAAGGIADGEGAAAGFMLG-AEAVQVGTRFVVAKESNAHPNYKEKILKARD  215 (332)
T ss_dssp             HHHHHHHHHCSSCEEEESSCCSHHHHHHHHHTT-CSEEEECHHHHTBTTCCSCHHHHHHHHHCCT
T ss_pred             HHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcC-CCEEEecHHHhcCccccccHHHHHHHHhCCC
Confidence            35567788888999999999 799999999988 89999999999999988      88877664

>1ka9_F Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.1.2.1

Probab=98.23  E-value=2.5e-06  Score=61.55  Aligned_cols=55  Identities=24%  Similarity=0.259  Sum_probs=48.8

Q ss_pred             HHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHhhCC
Q 046574           13 SLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEFNA   68 (104)
Q Consensus        13 ~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~~g~   68 (104)
                      .++.+++.++.|||+.|+| ++++++++++.| +|.|.+|+.++.+|+++.++.+..
T Consensus        66 ~i~~i~~~~~iPvi~~Ggi~~~~~~~~~~~~G-ad~V~lg~~~l~~p~~~~~~~~~~  121 (252)
T 1ka9_F           66 VVARVAERVFIPLTVGGGVRSLEDARKLLLSG-ADKVSVNSAAVRRPELIRELADHF  121 (252)
T ss_dssp             HHHHHHTTCCSCEEEESSCCSHHHHHHHHHHT-CSEEEECHHHHHCTHHHHHHHHHH
T ss_pred             HHHHHHHhCCCCEEEECCcCCHHHHHHHHHcC-CCEEEEChHHHhCcHHHHHHHHHc
Confidence            3566777778899999999 899999999999 899999999999999998887643

>1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis, lyase, phosphate-binding sites; 1.45A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2wjz_A 2a0n_A* 1gpw_A 1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A

Probab=98.13  E-value=6.2e-06  Score=59.48  Aligned_cols=54  Identities=26%  Similarity=0.310  Sum_probs=47.7

Q ss_pred             HHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHhhC
Q 046574           13 SLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEFN   67 (104)
Q Consensus        13 ~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~~g   67 (104)
                      ..+.+++.++.||++.|+| ++++++++++.| +|.|.+|+..+.||+++.++...
T Consensus        65 ~i~~i~~~~~ipvi~~ggI~~~~~~~~~~~~G-ad~V~lg~~~l~~p~~~~~~~~~  119 (253)
T 1thf_D           65 LVEKVAEQIDIPFTVGGGIHDFETASELILRG-ADKVSINTAAVENPSLITQIAQT  119 (253)
T ss_dssp             HHHHHHTTCCSCEEEESSCCSHHHHHHHHHTT-CSEEEESHHHHHCTHHHHHHHHH
T ss_pred             HHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcC-CCEEEEChHHHhChHHHHHHHHH
Confidence            3456777778899999999 999999999998 89999999999999999888654

>1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum aerophilum} SCOP: c.1.2.1

Probab=98.10  E-value=8.5e-06  Score=57.89  Aligned_cols=55  Identities=27%  Similarity=0.296  Sum_probs=48.8

Q ss_pred             hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHhhC
Q 046574           12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEFN   67 (104)
Q Consensus        12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~~g   67 (104)
                      ...+.+++.++.||+++|++ ++++++++++.| +|+|.+++.++.+|+++.++...
T Consensus        67 ~~i~~i~~~~~ipvi~~g~i~~~~~~~~~~~~G-ad~V~i~~~~~~~~~~~~~~~~~  122 (253)
T 1h5y_A           67 DSVKRVAEAVSIPVLVGGGVRSLEDATTLFRAG-ADKVSVNTAAVRNPQLVALLARE  122 (253)
T ss_dssp             HHHHHHHHHCSSCEEEESSCCSHHHHHHHHHHT-CSEEEESHHHHHCTHHHHHHHHH
T ss_pred             HHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcC-CCEEEEChHHhhCcHHHHHHHHH
Confidence            35567888888999999999 999999999999 89999999999999999887654

>3vk5_A MOEO5; TIM barrel, transferase; HET: FPQ; 1.39A {Streptomyces ghanaensis} PDB: 3vka_A* 3vkb_A* 3vkc_A* 3vkd_A*

Probab=98.09  E-value=5.3e-06  Score=62.90  Aligned_cols=56  Identities=14%  Similarity=0.170  Sum_probs=50.0

Q ss_pred             hHHHHHHHHc--CCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhC--CcHHHHHhhCC
Q 046574           12 HSLLLMRKAF--KGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLAN--PDLPRRFEFNA   68 (104)
Q Consensus        12 ~~~~~ir~~~--~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lan--Pdl~~ri~~g~   68 (104)
                      +..+.+++.+  +.||++.||| |+++++++++.| +|.|.+|..++.|  |+++..+....
T Consensus       215 e~V~~I~~~~~~~iPV~vGGGIrs~Eda~~ll~aG-AD~VVVGSAav~d~~Pelv~e~a~~~  275 (286)
T 3vk5_A          215 EVVRHFRKGLGPDQVLFVSGNVRSGRQVTEYLDSG-ADYVGFAGALEQPDWRSALAEIAGRR  275 (286)
T ss_dssp             HHHHHHHHHSCTTCEEEEESSCCSHHHHHHHHHTT-CSEEEESGGGSSTTHHHHHHHHHC--
T ss_pred             HHHHHHHHhcCCCCCEEEEeCCCCHHHHHHHHHcC-CCEEEECchhhcCCCHHHHHHHHHhC
Confidence            5778899999  7899999999 999999999999 8999999999999  99998888444

>2y88_A Phosphoribosyl isomerase A; aromatic amino acid biosynthesis, TIM-barrel, His biosynthesis, tryptophan biosynthesis; HET: 2ER; 1.33A {Mycobacterium tuberculosis} PDB: 2y89_A 2y85_A*

Probab=98.04  E-value=1.1e-05  Score=57.78  Aligned_cols=54  Identities=26%  Similarity=0.215  Sum_probs=49.3

Q ss_pred             hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHhh
Q 046574           12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEF   66 (104)
Q Consensus        12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~~   66 (104)
                      ...+.+++.++.||++.|+| ++++++.+++.| +|.|.+|+.++.||+++.++..
T Consensus        64 ~~i~~i~~~~~ipv~v~ggi~~~~~~~~~l~~G-ad~V~lg~~~l~~p~~~~~~~~  118 (244)
T 2y88_A           64 ELLAEVVGKLDVQVELSGGIRDDESLAAALATG-CARVNVGTAALENPQWCARVIG  118 (244)
T ss_dssp             HHHHHHHHHCSSEEEEESSCCSHHHHHHHHHTT-CSEEEECHHHHHCHHHHHHHHH
T ss_pred             HHHHHHHHhcCCcEEEECCCCCHHHHHHHHHcC-CCEEEECchHhhChHHHHHHHH
Confidence            56678888889999999999 999999999998 8999999999999999988765

>2y88_A Phosphoribosyl isomerase A; aromatic amino acid biosynthesis, TIM-barrel, His biosynthesis, tryptophan biosynthesis; HET: 2ER; 1.33A {Mycobacterium tuberculosis} PDB: 2y89_A 2y85_A*

Probab=98.03  E-value=8.4e-06  Score=58.48  Aligned_cols=54  Identities=13%  Similarity=0.083  Sum_probs=46.4

Q ss_pred             hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHc---CCCcEEecchHHhhCCcHHHHHhh
Q 046574           12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAE---GRADLVVYGRFFLANPDLPRRFEF   66 (104)
Q Consensus        12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~---g~~DlVa~gR~~lanPdl~~ri~~   66 (104)
                      +..+.+++..+.|||++||| +++.+.++++.   | +|.|.+||.++.+|.+...+++
T Consensus       183 ~~~~~l~~~~~ipvia~GGI~~~~d~~~~~~~~~~G-ad~v~vG~al~~~~~~~~~~~~  240 (244)
T 2y88_A          183 DLLAGVADRTDAPVIASGGVSSLDDLRAIATLTHRG-VEGAIVGKALYARRFTLPQALA  240 (244)
T ss_dssp             HHHHHHHTTCSSCEEEESCCCSHHHHHHHHTTGGGT-EEEEEECHHHHTTSSCHHHHHH
T ss_pred             HHHHHHHHhCCCCEEEECCCCCHHHHHHHHhhccCC-CCEEEEcHHHHCCCcCHHHHHH
Confidence            35667777778899999999 79999999987   6 8999999999999988776654

>1vzw_A Phosphoribosyl isomerase A; histidine biosynthesis, tryptophan biosynthesis; 1.8A {Streptomyces coelicolor} SCOP: c.1.2.1 PDB: 2vep_A 2x30_A

Probab=98.02  E-value=1.3e-05  Score=57.70  Aligned_cols=55  Identities=20%  Similarity=0.238  Sum_probs=49.6

Q ss_pred             hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHhhC
Q 046574           12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEFN   67 (104)
Q Consensus        12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~~g   67 (104)
                      ...+.+++.++.||++.|+| ++++++.+++.| +|.|.+|+.++.||+++.++...
T Consensus        65 ~~i~~i~~~~~ipv~v~ggI~~~~~~~~~l~~G-ad~V~lg~~~l~~p~~~~~~~~~  120 (244)
T 1vzw_A           65 ALIAEVAQAMDIKVELSGGIRDDDTLAAALATG-CTRVNLGTAALETPEWVAKVIAE  120 (244)
T ss_dssp             HHHHHHHHHCSSEEEEESSCCSHHHHHHHHHTT-CSEEEECHHHHHCHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCcEEEECCcCCHHHHHHHHHcC-CCEEEECchHhhCHHHHHHHHHH
Confidence            55677888889999999999 999999999998 89999999999999999887653

>3bw2_A 2-nitropropane dioxygenase; TIM barrel, oxidoreductase; HET: FMN; 2.10A {Streptomyces ansochromogenes} PDB: 3bw4_A* 3bw3_A*

Probab=98.00  E-value=1e-05  Score=62.15  Aligned_cols=49  Identities=29%  Similarity=0.329  Sum_probs=44.1

Q ss_pred             hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHH
Q 046574           12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLP   61 (104)
Q Consensus        12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~   61 (104)
                      ..+..+++.+++|||++||| +++.+.+++..| +|.|.+||.++.+|+++
T Consensus       198 ~~l~~i~~~~~iPViaaGGI~~~~~~~~~l~~G-Ad~V~vGs~~~~~~e~~  247 (369)
T 3bw2_A          198 SLLAQVREAVDIPVVAAGGIMRGGQIAAVLAAG-ADAAQLGTAFLATDESG  247 (369)
T ss_dssp             HHHHHHHHHCSSCEEEESSCCSHHHHHHHHHTT-CSEEEESHHHHTSTTCC
T ss_pred             HHHHHHHHhcCceEEEECCCCCHHHHHHHHHcC-CCEEEEChHHhCCcccC
Confidence            34566777788999999999 999999999999 89999999999999985

>1qo2_A Molecule: N-((5-phosphoribosyl)-formimino)-5-aminoimidazol- 4-carboxamid ribonucleotid...; isomerase, histidine biosynthesis; 1.85A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2cff_A 2w79_A

Probab=97.97  E-value=1.1e-05  Score=58.07  Aligned_cols=52  Identities=15%  Similarity=0.215  Sum_probs=45.3

Q ss_pred             HHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHhhC
Q 046574           13 SLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEFN   67 (104)
Q Consensus        13 ~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~~g   67 (104)
                      ..+.++ .++.||++.||+ ++++++++++.| +|.|.+|+.++.||+++.++ ..
T Consensus        65 ~i~~i~-~~~ipvi~~Ggi~~~~~~~~~~~~G-ad~V~lg~~~l~~p~~~~~~-~~  117 (241)
T 1qo2_A           65 VLEKLS-EFAEHIQIGGGIRSLDYAEKLRKLG-YRRQIVSSKVLEDPSFLKSL-RE  117 (241)
T ss_dssp             HHHHGG-GGGGGEEEESSCCSHHHHHHHHHTT-CCEEEECHHHHHCTTHHHHH-HT
T ss_pred             HHHHHH-hcCCcEEEECCCCCHHHHHHHHHCC-CCEEEECchHhhChHHHHHH-HH
Confidence            334454 567899999999 999999999998 89999999999999999998 44

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*

Probab=97.95  E-value=1.6e-05  Score=68.19  Aligned_cols=55  Identities=15%  Similarity=0.198  Sum_probs=48.5

Q ss_pred             HHHHHHHHc-CCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhh-CCcHHHHHhhCC
Q 046574           13 SLLLMRKAF-KGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLA-NPDLPRRFEFNA   68 (104)
Q Consensus        13 ~~~~ir~~~-~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~la-nPdl~~ri~~g~   68 (104)
                      .+..+++.+ ++|||++||| |+++|.++|..| +|+|.+||+++. +|+++.++..+.
T Consensus       777 ~v~~v~~~~~~ipvi~~GGI~s~~da~~~l~~G-a~~v~vg~~~l~~~~~~~~~~~~~l  834 (1025)
T 1gte_A          777 AVTTIARALPGFPILATGGIDSAESGLQFLHSG-ASVLQVCSAVQNQDFTVIQDYCTGL  834 (1025)
T ss_dssp             HHHHHHHHSTTCCEEEESSCCSHHHHHHHHHTT-CSEEEESHHHHTSCTTHHHHHHHHH
T ss_pred             HHHHHHHHcCCCCEEEecCcCCHHHHHHHHHcC-CCEEEEeeccccCCccHHHHHHHHH
Confidence            466788888 7899999999 999999999988 899999999997 888998887654

>2gjl_A Hypothetical protein PA1024; 2-nitropropane dioxygenase, 2-nitropropane, FMN, oxidoreduct; HET: FMN; 2.00A {Pseudomonas aeruginosa PAO1} PDB: 2gjn_A*

Probab=97.94  E-value=2.3e-05  Score=59.12  Aligned_cols=56  Identities=23%  Similarity=0.324  Sum_probs=48.8

Q ss_pred             HHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCc------HHHHHhhCCC
Q 046574           13 SLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPD------LPRRFEFNAP   69 (104)
Q Consensus        13 ~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPd------l~~ri~~g~~   69 (104)
                      .+..+++.+++|||++||| +++.+.+++..| +|.|.+|+.|+..|+      +.+++.+..+
T Consensus       163 ~l~~v~~~~~iPviaaGGI~~~~~v~~al~~G-AdgV~vGs~~~~~~e~~~~~~~k~~~~~~~~  225 (328)
T 2gjl_A          163 LLPAAANRLRVPIIASGGFADGRGLVAALALG-ADAINMGTRFLATRECPIHPAVKAAIRAADE  225 (328)
T ss_dssp             HHHHHHTTCCSCEEEESSCCSHHHHHHHHHHT-CSEEEESHHHHTSSSSCSCHHHHHHHHHCCT
T ss_pred             HHHHHHHhcCCCEEEECCCCCHHHHHHHHHcC-CCEEEECHHHHcCccccccHHHHHHHHhccc
Confidence            4556777778899999999 899999999988 899999999999999      8888877654

>1y0e_A Putative N-acetylmannosamine-6-phosphate 2-epimer; mannac-6-P epimerase, NANE, structural genomics, protein STR initiative, PSI; 1.95A {Staphylococcus aureus subsp} SCOP: c.1.2.5

Probab=97.92  E-value=2.1e-05  Score=55.78  Aligned_cols=50  Identities=12%  Similarity=0.111  Sum_probs=42.6

Q ss_pred             HHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHHHHH
Q 046574           13 SLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLPRRF   64 (104)
Q Consensus        13 ~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri   64 (104)
                      ..+.+++.++.|||+.||| +++.+.++++.| +|.|.+|+.+.. |+++.+.
T Consensus       166 ~~~~~~~~~~ipvia~GGI~~~~~~~~~~~~G-ad~v~vG~al~~-p~~~~~~  216 (223)
T 1y0e_A          166 FLKDVLQSVDAKVIAEGNVITPDMYKRVMDLG-VHCSVVGGAITR-PKEITKR  216 (223)
T ss_dssp             HHHHHHHHCCSEEEEESSCCSHHHHHHHHHTT-CSEEEECHHHHC-HHHHHHH
T ss_pred             HHHHHHhhCCCCEEEecCCCCHHHHHHHHHcC-CCEEEEChHHcC-cHHHHHH
Confidence            4566777788999999999 999999999998 899999999654 8776554

>1vcf_A Isopentenyl-diphosphate delta-isomerase; TIM barrel, structural genomics, riken structural genomics/P initiative, RSGI; HET: FMN; 2.60A {Thermus thermophilus} SCOP: c.1.4.1 PDB: 1vcg_A* 3dh7_A*

Probab=97.90  E-value=1.2e-05  Score=61.08  Aligned_cols=45  Identities=33%  Similarity=0.524  Sum_probs=39.6

Q ss_pred             HHHHHHHHc-CCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCC
Q 046574           13 SLLLMRKAF-KGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANP   58 (104)
Q Consensus        13 ~~~~ir~~~-~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanP   58 (104)
                      .+..+++.+ ++|||++||| +++++.++|..| +|+|.+||++|..+
T Consensus       246 ~l~~v~~~~~~ipvia~GGI~~~~d~~kal~~G-Ad~V~igr~~l~~~  292 (332)
T 1vcf_A          246 AILEVREVLPHLPLVASGGVYTGTDGAKALALG-ADLLAVARPLLRPA  292 (332)
T ss_dssp             HHHHHHHHCSSSCEEEESSCCSHHHHHHHHHHT-CSEEEECGGGHHHH
T ss_pred             HHHHHHHhcCCCeEEEECCCCCHHHHHHHHHhC-CChHhhhHHHHHHH
Confidence            446677888 6899999999 999999999998 89999999999654

>3tjx_A Dihydroorotate dehydrogenase; PYRD, dhodh, lmdhodh, oxidored mutation H174A; HET: FMN; 1.64A {Leishmania major} PDB: 3gz3_A* 3gye_A* 3tro_A*

Probab=97.90  E-value=2.5e-05  Score=59.69  Aligned_cols=52  Identities=19%  Similarity=0.267  Sum_probs=44.8

Q ss_pred             HHHHHc-CCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHh-hCCcHHHHHhhCC
Q 046574           16 LMRKAF-KGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFL-ANPDLPRRFEFNA   68 (104)
Q Consensus        16 ~ir~~~-~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~l-anPdl~~ri~~g~   68 (104)
                      .+++.. +.|||.+||| |.++|.+.|..| +|+|.++++++ .+|.++.+|.++.
T Consensus       270 ~~~~~~~~~pIIg~GGI~s~~Da~e~i~aG-As~Vqv~Ta~~y~GP~~~~~I~~~L  324 (354)
T 3tjx_A          270 AFYRRCPGKLIFGCGGVYTGEDAFLHVLAG-ASMVQVGTALQEEGPSIFERLTSEL  324 (354)
T ss_dssp             HHHHHCTTSEEEEESSCCSHHHHHHHHHHT-EEEEEECHHHHHHCTTHHHHHHHHH
T ss_pred             HHHHhcCCCcEEEeCCcCCHHHHHHHHHcC-CCEEEEChhhhhcCchHHHHHHHHH
Confidence            344554 4699999999 999999999999 89999999987 6899999998765

>3vzx_A Heptaprenylglyceryl phosphate synthase; biosynthesis, prenyltransferases, enzyme catalysis, transfer; 1.54A {Bacillus subtilis} PDB: 3vzy_A* 3vzz_A* 3w00_A* 1viz_A

Probab=97.90  E-value=2.5e-05  Score=57.36  Aligned_cols=54  Identities=20%  Similarity=0.268  Sum_probs=48.3

Q ss_pred             chHHHHHHHHc-CCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHhh
Q 046574           11 PHSLLLMRKAF-KGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEF   66 (104)
Q Consensus        11 ~~~~~~ir~~~-~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~~   66 (104)
                      .+..+.+++.+ +.||++.||| ++++|++++ .| +|.|.+|..++.||++..++.+
T Consensus       168 ~~~i~~i~~~~~~~Pv~vGGGI~t~e~a~~~~-~g-AD~VVVGSa~v~~p~~~~~~v~  223 (228)
T 3vzx_A          168 IEAVKKTKAVLETSTLFYGGGIKDAETAKQYA-EH-ADVIVVGNAVYEDFDRALKTVA  223 (228)
T ss_dssp             HHHHHHHHHHCSSSEEEEESSCCSHHHHHHHH-TT-CSEEEECTHHHHCHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCCEEEeCCCCCHHHHHHHH-hC-CCEEEEChHHhcCHHHHHHHHH
Confidence            35678899998 6899999999 999999998 66 8999999999999999998865

>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1

Probab=97.85  E-value=1.6e-05  Score=63.02  Aligned_cols=43  Identities=28%  Similarity=0.443  Sum_probs=39.4

Q ss_pred             cCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHHHHH
Q 046574           21 FKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLPRRF   64 (104)
Q Consensus        21 ~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri   64 (104)
                      .++|||++||| +++++.+++..| +|+|.+||+|+.+|+++...
T Consensus       339 ~~ipvia~GGI~~~~di~kala~G-Ad~V~iGr~~l~~~e~~~~~  382 (494)
T 1vrd_A          339 YDVPIIADGGIRYSGDIVKALAAG-AESVMVGSIFAGTEEAPGET  382 (494)
T ss_dssp             TTCCEEEESCCCSHHHHHHHHHTT-CSEEEESHHHHTBTTSSSEE
T ss_pred             cCCCEEEECCcCCHHHHHHHHHcC-CCEEEECHHHhcCCcCCcce
Confidence            57899999999 999999999999 89999999999999997543

>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*

Probab=97.85  E-value=1.4e-05  Score=63.85  Aligned_cols=48  Identities=25%  Similarity=0.365  Sum_probs=42.4

Q ss_pred             HHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHH
Q 046574           13 SLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLP   61 (104)
Q Consensus        13 ~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~   61 (104)
                      ....+++.+++|||++||| +++++.+++..| +|+|++||+|+.+|+++
T Consensus       349 ~~~~~~~~~~ipVia~GGI~~~~di~kala~G-Ad~V~iG~~~l~~~e~~  397 (514)
T 1jcn_A          349 KVAEYARRFGVPIIADGGIQTVGHVVKALALG-ASTVMMGSLLAATTEAP  397 (514)
T ss_dssp             HHHHHHGGGTCCEEEESCCCSHHHHHHHHHTT-CSEEEESTTTTTSTTSS
T ss_pred             HHHHHHhhCCCCEEEECCCCCHHHHHHHHHcC-CCeeeECHHHHcCCcCC
Confidence            3455667778999999999 899999999999 89999999999999865

>1ka9_F Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.1.2.1

Probab=97.85  E-value=4.7e-05  Score=54.77  Aligned_cols=52  Identities=15%  Similarity=0.130  Sum_probs=44.0

Q ss_pred             hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHHHHH
Q 046574           12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLPRRF   64 (104)
Q Consensus        12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri   64 (104)
                      +..+.+++.++.|||+.||| +++++.++++.| +|.|.+|+.++.+|.-+..+
T Consensus       186 ~~i~~l~~~~~ipvia~GGI~~~~d~~~~~~~G-adgv~vgsal~~~~~~~~~~  238 (252)
T 1ka9_F          186 RLTRMVAEAVGVPVIASGGAGRMEHFLEAFQAG-AEAALAASVFHFGEIPIPKL  238 (252)
T ss_dssp             HHHHHHHHHCSSCEEEESCCCSHHHHHHHHHTT-CSEEEESHHHHTTSSCHHHH
T ss_pred             HHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHCC-CHHHHHHHHHHcCCCCHHHH
Confidence            46677888889999999999 799999999766 89999999999999444433

>1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis, lyase, phosphate-binding sites; 1.45A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2wjz_A 2a0n_A* 1gpw_A 1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A

Probab=97.73  E-value=8.6e-05  Score=53.38  Aligned_cols=50  Identities=20%  Similarity=0.234  Sum_probs=42.8

Q ss_pred             hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCC-cHHH
Q 046574           12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANP-DLPR   62 (104)
Q Consensus        12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanP-dl~~   62 (104)
                      +..+.+++.++.|||+.||| +++++.++++.| +|.|.+|+.++.+| ++..
T Consensus       185 ~~~~~l~~~~~ipvia~GGI~~~~d~~~~~~~G-adgv~vGsal~~~~~~~~~  236 (253)
T 1thf_D          185 EMIRFVRPLTTLPIIASGGAGKMEHFLEAFLAG-ADAALAASVFHFREIDVRE  236 (253)
T ss_dssp             HHHHHHGGGCCSCEEEESCCCSHHHHHHHHHTT-CSEEEESHHHHTTCSCHHH
T ss_pred             HHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcC-ChHHHHHHHHHcCCCCHHH
Confidence            45667777778899999999 799999999877 89999999999999 5543

>1vzw_A Phosphoribosyl isomerase A; histidine biosynthesis, tryptophan biosynthesis; 1.8A {Streptomyces coelicolor} SCOP: c.1.2.1 PDB: 2vep_A 2x30_A

Probab=97.73  E-value=6.5e-05  Score=53.95  Aligned_cols=52  Identities=15%  Similarity=0.121  Sum_probs=43.9

Q ss_pred             hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHc---CCCcEEecchHHhhCCcHHHHH
Q 046574           12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAE---GRADLVVYGRFFLANPDLPRRF   64 (104)
Q Consensus        12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~---g~~DlVa~gR~~lanPdl~~ri   64 (104)
                      ...+.+++.++.|||+.||| +++.+.++++.   | +|.|.+|+.++.+|.-...+
T Consensus       180 ~~~~~i~~~~~ipvia~GGI~~~~d~~~~~~~~~~G-adgv~vG~al~~~~~~~~~~  235 (244)
T 1vzw_A          180 ELLKNVCAATDRPVVASGGVSSLDDLRAIAGLVPAG-VEGAIVGKALYAKAFTLEEA  235 (244)
T ss_dssp             HHHHHHHHTCSSCEEEESCCCSHHHHHHHHTTGGGT-EEEEEECHHHHTTSSCHHHH
T ss_pred             HHHHHHHHhcCCCEEEECCCCCHHHHHHHHhhccCC-CceeeeeHHHHcCCCCHHHH
Confidence            46677888888999999999 78999999987   6 89999999999998444433

>1viz_A PCRB protein homolog; structural genomics, unknown function; 1.85A {Bacillus subtilis} SCOP: c.1.4.1

Probab=97.73  E-value=4.4e-05  Score=56.33  Aligned_cols=52  Identities=19%  Similarity=0.316  Sum_probs=46.6

Q ss_pred             hHHHHHHHHc-CCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCc-HHHHHh
Q 046574           12 HSLLLMRKAF-KGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPD-LPRRFE   65 (104)
Q Consensus        12 ~~~~~ir~~~-~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPd-l~~ri~   65 (104)
                      +..+.+++.. +.||++.||| ++++++++++ | +|.|.+|..++.+|+ ++.+++
T Consensus       171 ~~i~~i~~~~~~~Pv~vGgGI~t~e~a~~~~~-g-Ad~VIVGSa~v~~~~~~~~~v~  225 (240)
T 1viz_A          171 EAVKKTKAVLETSTLFYGGGIKDAETAKQYAE-H-ADVIVVGNAVYEDFDRALKTVA  225 (240)
T ss_dssp             HHHHHHHHTCSSSEEEEESSCCSHHHHHHHHT-T-CSEEEECTHHHHCHHHHHTHHH
T ss_pred             HHHHHHHHhcCCCCEEEEeccCCHHHHHHHHh-C-CCEEEEChHHHhCHHHHHHHHH
Confidence            5677899988 8899999999 9999999887 6 899999999999999 887754

>1yad_A Regulatory protein TENI; TIM barrel, transcription; 2.10A {Bacillus subtilis} PDB: 3qh2_A*

Probab=97.73  E-value=6.8e-05  Score=53.25  Aligned_cols=51  Identities=12%  Similarity=0.087  Sum_probs=42.6

Q ss_pred             HHHHHHHHcCCeEEEeCCCCHHHHHHHHHcCCCcEEecchHHhhCCcHHHHH
Q 046574           13 SLLLMRKAFKGTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANPDLPRRF   64 (104)
Q Consensus        13 ~~~~ir~~~~~pvi~~Ggi~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri   64 (104)
                      ..+.+++..+.||++.|||+++.+.++++.| +|.|++|+.++.++|....+
T Consensus       155 ~l~~~~~~~~~pvia~GGI~~~nv~~~~~~G-a~gv~vgs~i~~~~d~~~~~  205 (221)
T 1yad_A          155 LLSDIKQRISIPVIAIGGMTPDRLRDVKQAG-ADGIAVMSGIFSSAEPLEAA  205 (221)
T ss_dssp             HHHHHHHHCCSCEEEESSCCGGGHHHHHHTT-CSEEEESHHHHTSSSHHHHH
T ss_pred             HHHHHHHhCCCCEEEECCCCHHHHHHHHHcC-CCEEEEhHHhhCCCCHHHHH
Confidence            4455666678899999999999999999988 89999999999988844433

>2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion protein, cobalamin, precorrin, novel fold, VIT; 2.10A {Thermotoga maritima}

Probab=97.72  E-value=2.9e-05  Score=56.39  Aligned_cols=54  Identities=19%  Similarity=0.145  Sum_probs=38.3

Q ss_pred             hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHhh
Q 046574           12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEF   66 (104)
Q Consensus        12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~~   66 (104)
                      +..+.+++.++.|||+.||| +++++.++++.| +|.|.+|+.++.+|+....+++
T Consensus       190 ~~i~~l~~~~~ipvia~GGI~~~ed~~~~~~~G-adgv~vgsal~~~~~~~~~~~~  244 (266)
T 2w6r_A          190 EMIRFVRPLTTLPIIASGGAGKMEHFLEAFLAG-ADAALAASVFHFREIDMRELKE  244 (266)
T ss_dssp             HHHHHHGGGCCSCEEEESCCCSHHHHHHHHHHT-CSEEEESTTTC-----------
T ss_pred             HHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHcC-CHHHHccHHHHcCCCCHHHHHH
Confidence            45667788888999999999 899999999877 8999999999999966665543

>1eep_A Inosine 5'-monophosphate dehydrogenase; alpha-beta barrel, TIM barrel, IMPDH, IMP dehydrogenase, LOO purine biosynthesis, oxidoreductase; 2.40A {Borrelia burgdorferi} SCOP: c.1.5.1

Probab=97.68  E-value=4.9e-05  Score=58.99  Aligned_cols=48  Identities=29%  Similarity=0.365  Sum_probs=41.4

Q ss_pred             HHHHHH---HcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHHH
Q 046574           14 LLLMRK---AFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLPR   62 (104)
Q Consensus        14 ~~~ir~---~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~   62 (104)
                      +..+++   ..++|||++||| +++++.+++..| +|+|.+||+|+..|+.+.
T Consensus       245 l~~v~~~~~~~~ipVia~GGI~~~~d~~~ala~G-Ad~V~iG~~~l~~~e~~~  296 (404)
T 1eep_A          245 ICDVYEACNNTNICIIADGGIRFSGDVVKAIAAG-ADSVMIGNLFAGTKESPS  296 (404)
T ss_dssp             HHHHHHHHTTSSCEEEEESCCCSHHHHHHHHHHT-CSEEEECHHHHTBTTSSS
T ss_pred             HHHHHHHHhhcCceEEEECCCCCHHHHHHHHHcC-CCHHhhCHHHhcCCCCCc
Confidence            444555   346899999999 899999999999 899999999999999873

>1qo2_A Molecule: N-((5-phosphoribosyl)-formimino)-5-aminoimidazol- 4-carboxamid ribonucleotid...; isomerase, histidine biosynthesis; 1.85A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2cff_A 2w79_A

Probab=97.66  E-value=0.00012  Score=52.66  Aligned_cols=54  Identities=20%  Similarity=0.128  Sum_probs=45.7

Q ss_pred             hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHc-----CCCcEEecchHHhhCCcHHHHHh
Q 046574           12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAE-----GRADLVVYGRFFLANPDLPRRFE   65 (104)
Q Consensus        12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~-----g~~DlVa~gR~~lanPdl~~ri~   65 (104)
                      +..+.+++.++.|||++||| +++++.++++.     |.+|.|.+|+.++..+.-+..++
T Consensus       178 ~~i~~l~~~~~iPvia~GGI~~~~d~~~~~~~~~~~~G~adgv~vgsal~~~~~~~~~~~  237 (241)
T 1qo2_A          178 SLTKKIAIEAEVKVLAAGGISSENSLKTAQKVHTETNGLLKGVIVGRAFLEGILTVEVMK  237 (241)
T ss_dssp             HHHHHHHHHHTCEEEEESSCCSHHHHHHHHHHHHHTTTSEEEEEECHHHHTTSSCHHHHH
T ss_pred             HHHHHHHHhcCCcEEEECCCCCHHHHHHHHhcccccCCeEeEEEeeHHHHcCCCCHHHHH
Confidence            45677888889999999999 89999999987     54899999999998887666554

>3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0

Probab=97.63  E-value=0.0001  Score=51.69  Aligned_cols=52  Identities=25%  Similarity=0.289  Sum_probs=44.7

Q ss_pred             hHHHHHHHHc-CCeEEEeCCCCHHHHHHHHHcCCCcEEecchHHhhCCcHHHHH
Q 046574           12 HSLLLMRKAF-KGTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANPDLPRRF   64 (104)
Q Consensus        12 ~~~~~ir~~~-~~pvi~~Ggi~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri   64 (104)
                      +..+.+++.+ +.|+++.|||+++.+.++++.| +|.|.+|++++..+|....+
T Consensus       148 ~~i~~l~~~~~~~~i~~~gGI~~~~~~~~~~~G-ad~vvvGsai~~~~d~~~~~  200 (211)
T 3f4w_A          148 DDLITMLKVRRKARIAVAGGISSQTVKDYALLG-PDVVIVGSAITHAADPAGEA  200 (211)
T ss_dssp             HHHHHHHHHCSSCEEEEESSCCTTTHHHHHTTC-CSEEEECHHHHTCSSHHHHH
T ss_pred             HHHHHHHHHcCCCcEEEECCCCHHHHHHHHHcC-CCEEEECHHHcCCCCHHHHH
Confidence            4667788887 6799999999999999999888 89999999999988865444

>3w01_A Heptaprenylglyceryl phosphate synthase; biosynthesis, prenyltransferases, enzyme catalysis, transfer; HET: PGE; 1.54A {Staphylococcus aureus} PDB: 3w02_A

Probab=97.61  E-value=8.2e-05  Score=54.90  Aligned_cols=54  Identities=11%  Similarity=0.182  Sum_probs=47.3

Q ss_pred             chHHHHHHHHc-CCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHhh
Q 046574           11 PHSLLLMRKAF-KGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEF   66 (104)
Q Consensus        11 ~~~~~~ir~~~-~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~~   66 (104)
                      .+..+.+|+.. +.||++.||| ++++|+++.+ | +|.|.+|..+..||+...++..
T Consensus       174 ~~~v~~ir~~~~~~pv~vGfGI~~~e~a~~~~~-g-AD~VVVGSai~~~~~~~~e~v~  229 (235)
T 3w01_A          174 VSKVQAVSEHLTETQLFYGGGISSEQQATEMAA-I-ADTIIVGDIIYKDIKKALKTVK  229 (235)
T ss_dssp             HHHHHHHHTTCSSSEEEEESCCCSHHHHHHHHT-T-SSEEEECTHHHHCHHHHHHTTC
T ss_pred             HHHHHHHHHhcCCCCEEEECCcCCHHHHHHHHc-C-CCEEEECCceecCHHHHHHHHH
Confidence            35678889988 7899999999 9999998875 6 8999999999999998887654

>1xi3_A Thiamine phosphate pyrophosphorylase; structural genomics, southeast collaboratory for structural genomics, hyperthermophIle; 1.70A {Pyrococcus furiosus} SCOP: c.1.3.1

Probab=97.58  E-value=0.00011  Score=51.27  Aligned_cols=51  Identities=14%  Similarity=0.262  Sum_probs=42.6

Q ss_pred             HHHHHHHHcCCeEEEeCCCCHHHHHHHHHcCCCcEEecchHHhhCCcHHHHH
Q 046574           13 SLLLMRKAFKGTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANPDLPRRF   64 (104)
Q Consensus        13 ~~~~ir~~~~~pvi~~Ggi~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri   64 (104)
                      ..+.+++..+.|+++.|||+++.+.++++.| +|.|.+|+.+...||...++
T Consensus       153 ~l~~l~~~~~~pvia~GGI~~~nv~~~~~~G-a~gv~vgs~i~~~~d~~~~~  203 (215)
T 1xi3_A          153 GLRKIVESVKIPVVAIGGINKDNAREVLKTG-VDGIAVISAVMGAEDVRKAT  203 (215)
T ss_dssp             HHHHHHHHCSSCEEEESSCCTTTHHHHHTTT-CSEEEESHHHHTSSSHHHHH
T ss_pred             HHHHHHHhCCCCEEEECCcCHHHHHHHHHcC-CCEEEEhHHHhCCCCHHHHH
Confidence            4556666778899999999999999998877 89999999999988865444

>2nli_A Lactate oxidase; flavoenzyme, FMN, D-lactate, oxidoreducta; HET: FMN; 1.59A {Aerococcus viridans} PDB: 2zfa_A* 2du2_A* 2e77_A* 2j6x_A*

Probab=97.56  E-value=0.00011  Score=56.82  Aligned_cols=45  Identities=29%  Similarity=0.385  Sum_probs=39.3

Q ss_pred             hHHHHHHHHc--CCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhC
Q 046574           12 HSLLLMRKAF--KGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLAN   57 (104)
Q Consensus        12 ~~~~~ir~~~--~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lan   57 (104)
                      ..+..+++.+  ++|||++||| +++++.++|..| +|+|.+||++|..
T Consensus       272 ~~l~~v~~~v~~~ipVia~GGI~~g~D~~kalalG-Ad~V~iGr~~l~~  319 (368)
T 2nli_A          272 DTLPAIAERVNKRVPIVFDSGVRRGEHVAKALASG-ADVVALGRPVLFG  319 (368)
T ss_dssp             HHHHHHHHHHTTSSCEEECSSCCSHHHHHHHHHTT-CSEEEECHHHHHH
T ss_pred             HHHHHHHHHhCCCCeEEEECCCCCHHHHHHHHHcC-CCEEEECHHHHHH
Confidence            3556677777  5799999999 999999999999 8999999999865

>1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum aerophilum} SCOP: c.1.2.1

Probab=97.56  E-value=0.00024  Score=50.24  Aligned_cols=52  Identities=19%  Similarity=0.159  Sum_probs=43.2

Q ss_pred             hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHHHHH
Q 046574           12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLPRRF   64 (104)
Q Consensus        12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri   64 (104)
                      +..+.+++.++.||+++||+ +++++.++++.| +|.|.+|+.++.+++-...+
T Consensus       188 ~~i~~l~~~~~~pvia~GGi~~~~~~~~~~~~G-a~~v~vgsal~~~~~~~~~~  240 (253)
T 1h5y_A          188 ELIRRVADSVRIPVIASGGAGRVEHFYEAAAAG-ADAVLAASLFHFRVLSIAQV  240 (253)
T ss_dssp             HHHHHHHHHCSSCEEEESCCCSHHHHHHHHHTT-CSEEEESHHHHTTSSCHHHH
T ss_pred             HHHHHHHHhcCCCEEEeCCCCCHHHHHHHHHcC-CcHHHHHHHHHcCCCCHHHH
Confidence            45677888888899999999 689999999877 89999999999887444433

>1p0k_A Isopentenyl-diphosphate delta-isomerase; terpene biosynthesis, dimethylallyl diphosphate, flavoprotein; 1.90A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1p0n_A*

Probab=97.55  E-value=0.00015  Score=55.07  Aligned_cols=45  Identities=38%  Similarity=0.455  Sum_probs=38.7

Q ss_pred             HHHHHHHHc-CCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCC
Q 046574           13 SLLLMRKAF-KGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANP   58 (104)
Q Consensus        13 ~~~~ir~~~-~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanP   58 (104)
                      .+..+++.+ ++|||++||| +++++.+++..| +|+|.+||+++..+
T Consensus       241 ~l~~v~~~~~~ipvia~GGI~~~~d~~k~l~~G-Ad~V~iG~~~l~~~  287 (349)
T 1p0k_A          241 SLAEIRSEFPASTMIASGGLQDALDVAKAIALG-ASCTGMAGHFLKAL  287 (349)
T ss_dssp             HHHHHHHHCTTSEEEEESSCCSHHHHHHHHHTT-CSEEEECHHHHHHH
T ss_pred             HHHHHHHhcCCCeEEEECCCCCHHHHHHHHHcC-CCEEEEcHHHHHHH
Confidence            345566666 6799999999 999999999998 89999999999863

>3o07_A Pyridoxine biosynthesis protein SNZ1; (beta/alpha)8-barrel, pyridoxal 5-phosphate synthase, PLP G3 SNO1, biosynthetic protein; HET: 1GP; 1.80A {Saccharomyces cerevisiae} PDB: 3o06_A 3o05_A* 3fem_A

Probab=97.53  E-value=0.00012  Score=55.51  Aligned_cols=49  Identities=20%  Similarity=0.134  Sum_probs=41.0

Q ss_pred             hHHHHHHHHcCCeE--EEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHH
Q 046574           12 HSLLLMRKAFKGTF--LVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLP   61 (104)
Q Consensus        12 ~~~~~ir~~~~~pv--i~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~   61 (104)
                      +....+++..+.||  |++||| |+++|..+++.| +|.|.+||..+..+|-.
T Consensus       188 elI~~Ike~~~IPVV~IAnGGI~TpedA~~~le~G-aDGVmVGrAI~~s~DP~  239 (291)
T 3o07_A          188 SLLKDVLEKGKLPVVNFAAGGVATPADAALLMQLG-CDGVFVGSGIFKSSNPV  239 (291)
T ss_dssp             HHHHHHHHHTSCSSCEEBCSSCCSHHHHHHHHHTT-CSCEEECGGGGGSSCHH
T ss_pred             HHHHHHHHccCCCEEEecCCCCCCHHHHHHHHHhC-CCEEEEchHHhCCCCHH
Confidence            35667888878887  568999 999999999877 89999999999966643

>1yxy_A Putative N-acetylmannosamine-6-phosphate 2-epimer; structural genomics, epimerase, PSI, structure initiative; 1.60A {Streptococcus pyogenes} SCOP: c.1.2.5

Probab=97.51  E-value=0.00015  Score=51.71  Aligned_cols=47  Identities=19%  Similarity=0.152  Sum_probs=39.4

Q ss_pred             hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHH
Q 046574           12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLP   61 (104)
Q Consensus        12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~   61 (104)
                      ...+.+++. +.||++.||| |++.+.++++.| +|.|.+|+.++. |...
T Consensus       177 ~~i~~~~~~-~ipvia~GGI~s~~~~~~~~~~G-ad~v~vGsal~~-p~~~  224 (234)
T 1yxy_A          177 ALIEALCKA-GIAVIAEGKIHSPEEAKKINDLG-VAGIVVGGAITR-PKEI  224 (234)
T ss_dssp             HHHHHHHHT-TCCEEEESCCCSHHHHHHHHTTC-CSEEEECHHHHC-HHHH
T ss_pred             HHHHHHHhC-CCCEEEECCCCCHHHHHHHHHCC-CCEEEEchHHhC-hHHH
Confidence            345566666 7899999999 699999999998 899999999887 6544

>1ypf_A GMP reductase; GUAC, purines, pyrimidines, nucleosides, nucleotides, nucleo nucleoside interconversions, spine, structural genomics; 1.80A {Bacillus anthracis} PDB: 2a1y_A*

Probab=97.47  E-value=0.00015  Score=55.17  Aligned_cols=44  Identities=30%  Similarity=0.422  Sum_probs=38.8

Q ss_pred             HHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhC
Q 046574           13 SLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLAN   57 (104)
Q Consensus        13 ~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lan   57 (104)
                      .+..+++.+++|||++||| ++.++.+++..| +|.|.+||+++.-
T Consensus       201 ~l~~v~~~~~ipVIa~GGI~~g~Dv~kalalG-AdaV~iGr~~l~t  245 (336)
T 1ypf_A          201 ALRWCAKAASKPIIADGGIRTNGDVAKSIRFG-ATMVMIGSLFAGH  245 (336)
T ss_dssp             HHHHHHHTCSSCEEEESCCCSTHHHHHHHHTT-CSEEEESGGGTTC
T ss_pred             HHHHHHHHcCCcEEEeCCCCCHHHHHHHHHcC-CCEEEeChhhhcc
Confidence            4556777778999999999 999999999998 8999999999964

>1xm3_A Thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI, NESG, northeast structural genomics consortium; 1.80A {Bacillus subtilis} SCOP: c.1.31.1 PDB: 1tyg_A

Probab=97.42  E-value=0.00041  Score=51.21  Aligned_cols=49  Identities=24%  Similarity=0.272  Sum_probs=42.5

Q ss_pred             chHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcH
Q 046574           11 PHSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDL   60 (104)
Q Consensus        11 ~~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl   60 (104)
                      ...++.+++..+.||++.||| +++++.++++.| +|.|.+|..++..+|-
T Consensus       167 ~~~l~~i~~~~~iPviv~gGI~t~eda~~~~~~G-AdgViVGSAi~~a~dp  216 (264)
T 1xm3_A          167 PLNLSFIIEQAKVPVIVDAGIGSPKDAAYAMELG-ADGVLLNTAVSGADDP  216 (264)
T ss_dssp             HHHHHHHHHHCSSCBEEESCCCSHHHHHHHHHTT-CSEEEESHHHHTSSSH
T ss_pred             HHHHHHHHhcCCCCEEEEeCCCCHHHHHHHHHcC-CCEEEEcHHHhCCCCH
Confidence            346778888888899999999 799999999998 8999999999976653

>1p4c_A L(+)-mandelate dehydrogenase; TIM barrel, hydroxy acid oxidizing enzyme, oxidoreductase; HET: FMN MES; 1.35A {Pseudomonas putida} SCOP: c.1.4.1 PDB: 1huv_A* 1p5b_A* 3giy_A* 2a7p_A* 2a85_A* 2a7n_A*

Probab=97.42  E-value=0.00017  Score=55.99  Aligned_cols=46  Identities=28%  Similarity=0.280  Sum_probs=40.8

Q ss_pred             hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCC
Q 046574           12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANP   58 (104)
Q Consensus        12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanP   58 (104)
                      ..+..+++.++.|||++||| +++++.+++..| +|.|.+||+++...
T Consensus       268 ~~l~~v~~~~~~pVia~GGI~~~~dv~kal~~G-AdaV~iGr~~l~~~  314 (380)
T 1p4c_A          268 EVLAQSVAKTGKPVLIDSGFRRGSDIVKALALG-AEAVLLGRATLYGL  314 (380)
T ss_dssp             GTHHHHHHHHCSCEEECSSCCSHHHHHHHHHTT-CSCEEESHHHHHHH
T ss_pred             HHHHHHHHHcCCeEEEECCCCCHHHHHHHHHhC-CcHhhehHHHHHHH
Confidence            35567888888899999999 999999999988 89999999999754

>3ajx_A 3-hexulose-6-phosphate synthase; HPS, OMPDC suprafamily, LYA; 1.60A {Mycobacterium gastri}

Probab=97.42  E-value=0.00026  Score=49.51  Aligned_cols=48  Identities=23%  Similarity=0.223  Sum_probs=40.6

Q ss_pred             HHHHHHc--CCeEEEeCCCCHHHHHHHHHcCCCcEEecchHHhhCCcHHHH
Q 046574           15 LLMRKAF--KGTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANPDLPRR   63 (104)
Q Consensus        15 ~~ir~~~--~~pvi~~Ggi~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~r   63 (104)
                      +.+|+..  +.|+++.|||+++.+.++++.| +|.|++||++...+|....
T Consensus       149 ~~i~~~~~~~~pi~v~GGI~~~~~~~~~~aG-ad~vvvGsaI~~~~dp~~~  198 (207)
T 3ajx_A          149 GLLAAGEKARVPFSVAGGVKVATIPAVQKAG-AEVAVAGGAIYGAADPAAA  198 (207)
T ss_dssp             HHHHHHHHHTSCEEEESSCCGGGHHHHHHTT-CSEEEESHHHHTSSSHHHH
T ss_pred             HHHHHhhCCCCCEEEECCcCHHHHHHHHHcC-CCEEEEeeeccCCCCHHHH
Confidence            5566655  6799999999999999999998 7999999999998875443

>2tps_A Protein (thiamin phosphate synthase); thiamin biosynthesis, TIM barrel; HET: TPS; 1.25A {Bacillus subtilis} SCOP: c.1.3.1 PDB: 1g4t_A* 3o15_A* 1g6c_A* 1g4e_A* 1g69_A* 3o16_A 1g4s_A* 1g4p_A* 1g67_A*

Probab=97.40  E-value=0.00021  Score=50.42  Aligned_cols=51  Identities=18%  Similarity=0.096  Sum_probs=42.3

Q ss_pred             hHHHHHHHHcC-CeEEEeCCCCHHHHHHHHHcCCCcEEecchHHhhCCcHHHH
Q 046574           12 HSLLLMRKAFK-GTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANPDLPRR   63 (104)
Q Consensus        12 ~~~~~ir~~~~-~pvi~~Ggi~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~r   63 (104)
                      ...+.+++.++ .|+++.|||+++.+.++++.| +|.|.+|+.+...+|...+
T Consensus       161 ~~l~~~~~~~~~~pvia~GGI~~~nv~~~~~~G-a~gv~vgs~i~~~~d~~~~  212 (227)
T 2tps_A          161 SLIEAVRRQGISIPIVGIGGITIDNAAPVIQAG-ADGVSMISAISQAEDPESA  212 (227)
T ss_dssp             HHHHHHHHTTCCCCEEEESSCCTTTSHHHHHTT-CSEEEESHHHHTSSCHHHH
T ss_pred             HHHHHHHHhCCCCCEEEEcCCCHHHHHHHHHcC-CCEEEEhHHhhcCCCHHHH
Confidence            45567777777 899999999999999998877 8999999999987764333

>2nzl_A Hydroxyacid oxidase 1; HAOX1, glycolate oxidase, GOX, GOX1, structural genomics, structural genom consortium, SGC, oxidoreductase; HET: FMN; 1.35A {Homo sapiens} PDB: 2rdu_A* 2rdt_A* 2rdw_A* 2w0u_A*

Probab=97.39  E-value=0.00026  Score=55.30  Aligned_cols=46  Identities=30%  Similarity=0.286  Sum_probs=39.3

Q ss_pred             hHHHHHHHHc--CCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCC
Q 046574           12 HSLLLMRKAF--KGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANP   58 (104)
Q Consensus        12 ~~~~~ir~~~--~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanP   58 (104)
                      ..+..+++.+  ++|||++||| +++++.++|..| +|+|.+||+++...
T Consensus       295 ~~l~~v~~av~~~ipVia~GGI~~g~Dv~kalalG-Ad~V~iGr~~l~~~  343 (392)
T 2nzl_A          295 DVLPEIVEAVEGKVEVFLDGGVRKGTDVLKALALG-AKAVFVGRPIVWGL  343 (392)
T ss_dssp             HHHHHHHHHHTTSSEEEECSSCCSHHHHHHHHHTT-CSEEEECHHHHHHH
T ss_pred             HHHHHHHHHcCCCCEEEEECCCCCHHHHHHHHHhC-CCeeEECHHHHHHH
Confidence            3455677777  4799999999 999999999998 89999999999753

>3bo9_A Putative nitroalkan dioxygenase; TM0800, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 2PE; 2.71A {Thermotoga maritima MSB8}

Probab=97.39  E-value=0.00029  Score=53.40  Aligned_cols=46  Identities=26%  Similarity=0.332  Sum_probs=40.9

Q ss_pred             HHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCc
Q 046574           13 SLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPD   59 (104)
Q Consensus        13 ~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPd   59 (104)
                      .+..+++.+++|||++||| +++.+.+++..| +|.|.+|+.|+..++
T Consensus       167 ll~~i~~~~~iPviaaGGI~~~~dv~~al~~G-A~gV~vGs~~~~~~e  213 (326)
T 3bo9_A          167 LVNKVSRSVNIPVIAAGGIADGRGMAAAFALG-AEAVQMGTRFVASVE  213 (326)
T ss_dssp             HHHHHHHHCSSCEEEESSCCSHHHHHHHHHHT-CSEEEESHHHHTBSS
T ss_pred             HHHHHHHHcCCCEEEECCCCCHHHHHHHHHhC-CCEEEechHHHcCcc
Confidence            4556777778999999999 799999999988 899999999998887

>1gox_A (S)-2-hydroxy-acid oxidase, peroxisomal; oxidoreductase (oxygen(A)); HET: FMN; 2.00A {Spinacia oleracea} SCOP: c.1.4.1 PDB: 1gyl_A* 1al8_A* 1al7_A* 2cdh_0

Probab=97.38  E-value=0.00029  Score=54.37  Aligned_cols=44  Identities=32%  Similarity=0.277  Sum_probs=38.7

Q ss_pred             HHHHHHHHc--CCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhC
Q 046574           13 SLLLMRKAF--KGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLAN   57 (104)
Q Consensus        13 ~~~~ir~~~--~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lan   57 (104)
                      .+..+++.+  ++|||++||| +++++.+++..| +|+|.+||+++..
T Consensus       269 ~l~~v~~~~~~~ipvia~GGI~~~~D~~k~l~~G-AdaV~iGr~~l~~  315 (370)
T 1gox_A          269 ALEEVVKAAQGRIPVFLDGGVRRGTDVFKALALG-AAGVFIGRPVVFS  315 (370)
T ss_dssp             HHHHHHHHTTTSSCEEEESSCCSHHHHHHHHHHT-CSEEEECHHHHHH
T ss_pred             HHHHHHHHhCCCCEEEEECCCCCHHHHHHHHHcC-CCEEeecHHHHHH
Confidence            455677777  5799999999 999999999999 8999999999964

>3sgz_A Hydroxyacid oxidase 2; flavoprotein, homology, INH oxidoreductase-oxidoreductase inhibitor complex; HET: FMN HO6; 1.35A {Rattus norvegicus} PDB: 1tb3_A*

Probab=97.34  E-value=0.00036  Score=54.07  Aligned_cols=45  Identities=31%  Similarity=0.293  Sum_probs=38.4

Q ss_pred             hHHHHHHHHc--CCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhC
Q 046574           12 HSLLLMRKAF--KGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLAN   57 (104)
Q Consensus        12 ~~~~~ir~~~--~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lan   57 (104)
                      +.+..+++.+  ++|||++||| +++++.++|.-| +|+|.+||++|..
T Consensus       260 ~~L~~i~~av~~~ipVia~GGI~~g~Dv~kaLalG-A~aV~iGr~~l~~  307 (352)
T 3sgz_A          260 DALREVVAAVKGKIEVYMDGGVRTGTDVLKALALG-ARCIFLGRPILWG  307 (352)
T ss_dssp             HHHHHHHHHHTTSSEEEEESSCCSHHHHHHHHHTT-CSEEEESHHHHHH
T ss_pred             HHHHHHHHHhCCCCeEEEECCCCCHHHHHHHHHcC-CCEEEECHHHHHH
Confidence            3455666777  5799999999 999999999998 8999999999953

>1wa3_A 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, pyruvate, lyase; 1.9A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1vlw_A

Probab=97.34  E-value=0.00023  Score=49.72  Aligned_cols=46  Identities=17%  Similarity=0.207  Sum_probs=39.8

Q ss_pred             HHHHHHHHc-CCeEEEeCCCCHHHHHHHHHcCCCcEEecchHHhhCCcH
Q 046574           13 SLLLMRKAF-KGTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANPDL   60 (104)
Q Consensus        13 ~~~~ir~~~-~~pvi~~Ggi~~~~ae~~l~~g~~DlVa~gR~~lanPdl   60 (104)
                      .++.+++.+ +.||++.|||+++.+.++++.| +|.|++|+.++. +||
T Consensus       140 ~~~~l~~~~~~~pvia~GGI~~~~~~~~~~~G-a~~v~vGs~i~~-~d~  186 (205)
T 1wa3_A          140 FVKAMKGPFPNVKFVPTGGVNLDNVCEWFKAG-VLAVGVGSALVK-GTP  186 (205)
T ss_dssp             HHHHHHTTCTTCEEEEBSSCCTTTHHHHHHHT-CSCEEECHHHHC-SCH
T ss_pred             HHHHHHHhCCCCcEEEcCCCCHHHHHHHHHCC-CCEEEECccccC-CCH
Confidence            445566667 6899999999999999999999 899999999998 885

>1kbi_A Cytochrome B2, L-LCR; flavocytochrome B2, electron transfer, oxidoreductase; HET: HEM FMN; 2.30A {Saccharomyces cerevisiae} SCOP: c.1.4.1 d.120.1.1 PDB: 1fcb_A* 1lco_A* 1ldc_A* 1sze_A* 2oz0_A* 1szf_A* 1szg_A* 1ltd_A* 1kbj_A* 1qcw_A* 3ks0_A*

Probab=97.34  E-value=0.00028  Score=56.81  Aligned_cols=45  Identities=33%  Similarity=0.273  Sum_probs=38.8

Q ss_pred             HHHHHHHHc-------CCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCC
Q 046574           13 SLLLMRKAF-------KGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANP   58 (104)
Q Consensus        13 ~~~~ir~~~-------~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanP   58 (104)
                      .+..+++.+       ++|||++||| +++++.++|..| +|+|.+||++|...
T Consensus       387 ~l~~v~~~v~~~~~~~~ipVia~GGI~~g~Dv~kaLalG-AdaV~iGr~~l~~~  439 (511)
T 1kbi_A          387 VLAETMPILEQRNLKDKLEVFVDGGVRRGTDVLKALCLG-AKGVGLGRPFLYAN  439 (511)
T ss_dssp             HHHHHHHHHHTTTCBTTBEEEEESSCCSHHHHHHHHHHT-CSEEEECHHHHHHH
T ss_pred             HHHHHHHHHHhhccCCCcEEEEECCCCCHHHHHHHHHcC-CCEEEECHHHHHHH
Confidence            445566666       5799999999 999999999999 89999999999765

>1rpx_A Protein (ribulose-phosphate 3-epimerase); chloroplast, calvin cycle, oxidative pentose PH pathway; 2.30A {Solanum tuberosum} SCOP: c.1.2.2

Probab=97.32  E-value=0.00039  Score=49.53  Aligned_cols=51  Identities=25%  Similarity=0.373  Sum_probs=42.0

Q ss_pred             HHHHHHHHc-----CCeEEEeCCCCHHHHHHHHHcCCCcEEecchHHhhCCcHHHHH
Q 046574           13 SLLLMRKAF-----KGTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANPDLPRRF   64 (104)
Q Consensus        13 ~~~~ir~~~-----~~pvi~~Ggi~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri   64 (104)
                      ..+.+|+..     +.|+++.|||+++.+.++++.| +|.|.+|+++...+|....+
T Consensus       165 ~i~~l~~~~~~~~~~~pi~v~GGI~~~n~~~~~~aG-ad~vvvgSaI~~a~dp~~a~  220 (230)
T 1rpx_A          165 KISDLRKICAERGLNPWIEVDGGVGPKNAYKVIEAG-ANALVAGSAVFGAPDYAEAI  220 (230)
T ss_dssp             HHHHHHHHHHHHTCCCEEEEESSCCTTTHHHHHHHT-CCEEEESHHHHTSSCHHHHH
T ss_pred             HHHHHHHHHHhcCCCceEEEECCCCHHHHHHHHHcC-CCEEEEChhhhCCCCHHHHH
Confidence            345677766     6799999999999998988888 79999999999988865443

>1h1y_A D-ribulose-5-phosphate 3-epimerase; oxidative pentose phosphate pathway, isomerase; 1.87A {Oryza sativa} SCOP: c.1.2.2 PDB: 1h1z_A

Probab=97.31  E-value=0.00042  Score=49.69  Aligned_cols=51  Identities=20%  Similarity=0.273  Sum_probs=42.8

Q ss_pred             HHHHHHHHc-CCeEEEeCCCCHHHHHHHHHcCCCcEEecchHHhhCCcHHHHH
Q 046574           13 SLLLMRKAF-KGTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANPDLPRRF   64 (104)
Q Consensus        13 ~~~~ir~~~-~~pvi~~Ggi~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri   64 (104)
                      ..+.+|+.. +.|+++.|||+++.+.++++.| +|.|.+|+.+...||....+
T Consensus       163 ~i~~~~~~~~~~pi~v~GGI~~~ni~~~~~aG-aD~vvvGsai~~~~d~~~~~  214 (228)
T 1h1y_A          163 KVRALRKKYPSLDIEVDGGLGPSTIDVAASAG-ANCIVAGSSIFGAAEPGEVI  214 (228)
T ss_dssp             HHHHHHHHCTTSEEEEESSCSTTTHHHHHHHT-CCEEEESHHHHTSSCHHHHH
T ss_pred             HHHHHHHhcCCCCEEEECCcCHHHHHHHHHcC-CCEEEECHHHHCCCCHHHHH
Confidence            456677777 6799999999889999999888 89999999999988865444

>4gj1_A 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) methylideneamino] imidazole-4-carboxamide...; HISA, csgid, niaid,; 2.15A {Campylobacter jejuni subsp}

Probab=97.31  E-value=0.00042  Score=50.63  Aligned_cols=54  Identities=19%  Similarity=0.219  Sum_probs=48.4

Q ss_pred             hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHhh
Q 046574           12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEF   66 (104)
Q Consensus        12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~~   66 (104)
                      ...+.+.+...+|+-+.||| +.++++.+++.| +|-|.++...+.||+|+.++..
T Consensus        65 ~~i~~i~~~~~~pl~vGGGIrs~e~~~~~l~~G-adkVii~t~a~~~p~li~e~~~  119 (243)
T 4gj1_A           65 ALIEKLAKEVSVNLQVGGGIRSKEEVKALLDCG-VKRVVIGSMAIKDATLCLEILK  119 (243)
T ss_dssp             HHHHHHHHHCCSEEEEESSCCCHHHHHHHHHTT-CSEEEECTTTTTCHHHHHHHHH
T ss_pred             HHHHHHHHhcCCCeEeccccccHHHHHHHHHcC-CCEEEEccccccCCchHHHHHh
Confidence            45566777788999999999 999999999999 8999999999999999988766

>2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion protein, cobalamin, precorrin, novel fold, VIT; 2.10A {Thermotoga maritima}

Probab=97.30  E-value=0.00019  Score=51.95  Aligned_cols=55  Identities=16%  Similarity=0.167  Sum_probs=45.1

Q ss_pred             hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHh-h--CCcHHHHHhhC
Q 046574           12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFL-A--NPDLPRRFEFN   67 (104)
Q Consensus        12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~l-a--nPdl~~ri~~g   67 (104)
                      ...+.+++.++.||++.||+ ++++++++++.| +|.|.+|+.++ .  +|++..++...
T Consensus        64 ~~i~~i~~~~~iPvi~~ggi~~~~~i~~~~~~G-ad~v~lg~~~~~~~~~~~~~~~~~~~  122 (266)
T 2w6r_A           64 EMIRFVRPLTTLPIIASGGAGKMEHFLEAFLAG-ADKALAASVFHFREIDMRELKEYLKK  122 (266)
T ss_dssp             HHHHHHGGGCCSCEEEESCCCSTHHHHHHHHHT-CSEEECCCCC------CHHHHHHCC-
T ss_pred             HHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcC-CcHhhhhHHHHhCCCCHHHHHHHHHH
Confidence            45667778788999999999 899999999988 89999999999 6  99999988543

>2qr6_A IMP dehydrogenase/GMP reductase; NP_599840.1, G reductase domain, structural genomics, joint center for STR genomics, JCSG; HET: MSE; 1.50A {Corynebacterium glutamicum atcc 13032}

Probab=97.26  E-value=0.00045  Score=53.32  Aligned_cols=36  Identities=33%  Similarity=0.369  Sum_probs=34.4

Q ss_pred             CeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCc
Q 046574           23 GTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPD   59 (104)
Q Consensus        23 ~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPd   59 (104)
                      +|||++||| +++++.+++..| +|+|.+||+|+..++
T Consensus       278 ipvia~GGI~~~~dv~kalalG-A~~V~iG~~~l~~~e  314 (393)
T 2qr6_A          278 VHIIADGSIENSGDVVKAIACG-ADAVVLGSPLARAEE  314 (393)
T ss_dssp             CEEEECSSCCSHHHHHHHHHHT-CSEEEECGGGGGSTT
T ss_pred             eEEEEECCCCCHHHHHHHHHcC-CCEEEECHHHHcCCC
Confidence            899999999 999999999999 899999999999886

>3r2g_A Inosine 5'-monophosphate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.94A {Legionella pneumophila subsp}

Probab=97.25  E-value=0.00048  Score=53.49  Aligned_cols=50  Identities=26%  Similarity=0.404  Sum_probs=41.8

Q ss_pred             HHHHHHHHcCC--eEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHHHH
Q 046574           13 SLLLMRKAFKG--TFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLPRR   63 (104)
Q Consensus        13 ~~~~ir~~~~~--pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~r   63 (104)
                      .+..|++..+.  |||+.||| ++.++.++|..| +|+|.+||+|+...+-+-+
T Consensus       188 ~l~aI~~~~~~~~PVIAdGGI~~~~di~kALa~G-Ad~V~iGr~f~~t~Espg~  240 (361)
T 3r2g_A          188 MLTCIQDCSRADRSIVADGGIKTSGDIVKALAFG-ADFVMIGGMLAGSAPTPGE  240 (361)
T ss_dssp             HHHHHHHHTTSSSEEEEESCCCSHHHHHHHHHTT-CSEEEESGGGTTBTTSSSC
T ss_pred             HHHHHHHHHHhCCCEEEECCCCCHHHHHHHHHcC-CCEEEEChHHhCCccCCce
Confidence            34566666654  99999999 899999999999 8999999999998875443

>2f6u_A GGGPS, (S)-3-O-geranylgeranylglyceryl phosphate synthase; non-canonical TIM-barrel, prenyltransferase, archaeal lipid synthesis, dimer; HET: CIT; 1.55A {Archaeoglobus fulgidus} SCOP: c.1.4.1 PDB: 2f6x_A*

Probab=97.24  E-value=0.00039  Score=51.08  Aligned_cols=47  Identities=19%  Similarity=0.315  Sum_probs=42.5

Q ss_pred             hHHHHHHHHc-CCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcH
Q 046574           12 HSLLLMRKAF-KGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDL   60 (104)
Q Consensus        12 ~~~~~ir~~~-~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl   60 (104)
                      +..+.+++.. +.||++.||| ++++++++++ | +|.|.+|..++.+|+-
T Consensus       179 ~~i~~i~~~~~~~Pv~vGgGI~s~e~a~~~~~-g-Ad~VIVGSa~v~~~~~  227 (234)
T 2f6u_A          179 ELVAEVKKVLDKARLFYGGGIDSREKAREMLR-Y-ADTIIVGNVIYEKGID  227 (234)
T ss_dssp             HHHHHHHHHCSSSEEEEESCCCSHHHHHHHHH-H-SSEEEECHHHHHHCHH
T ss_pred             HHHHHHHHhCCCCCEEEEecCCCHHHHHHHHh-C-CCEEEEChHHHhCHHH
Confidence            5678899998 8899999999 9999999987 7 8999999999999864

>2nv1_A Pyridoxal biosynthesis lyase PDXS; (beta/alpha)8-barrel, synthase; 2.08A {Bacillus subtilis} PDB: 2nv2_A* 1znn_A

Probab=97.24  E-value=0.00034  Score=52.35  Aligned_cols=47  Identities=28%  Similarity=0.297  Sum_probs=40.1

Q ss_pred             hHHHHHHHHcCCeEE--EeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCc
Q 046574           12 HSLLLMRKAFKGTFL--VAGGY-DREDGNKAIAEGRADLVVYGRFFLANPD   59 (104)
Q Consensus        12 ~~~~~ir~~~~~pvi--~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPd   59 (104)
                      +....+++..++||+  ++||| +++++.+++..| +|.|.+|+.++..+|
T Consensus       197 ~~i~~i~~~~~iPvi~~a~GGI~~~~d~~~~~~~G-adgV~vGsai~~~~~  246 (305)
T 2nv1_A          197 ELLLQIKKDGKLPVVNFAAGGVATPADAALMMQLG-ADGVFVGSGIFKSDN  246 (305)
T ss_dssp             HHHHHHHHHTSCSSCEEBCSCCCSHHHHHHHHHTT-CSCEEECGGGGGSSC
T ss_pred             HHHHHHHHhcCCCEEEEeccCCCCHHHHHHHHHcC-CCEEEEcHHHHcCCC
Confidence            345667777778988  99999 999999999888 899999999998665

>2fli_A Ribulose-phosphate 3-epimerase; (beta/alpha)8-barrel, D- xylitol 5-phosphate, isomerase; HET: DX5; 1.80A {Streptococcus pyogenes} SCOP: c.1.2.2

Probab=97.23  E-value=0.00058  Score=48.00  Aligned_cols=50  Identities=22%  Similarity=0.296  Sum_probs=41.2

Q ss_pred             HHHHHHHc-----CCeEEEeCCCCHHHHHHHHHcCCCcEEecchHHhhCCcHHHHH
Q 046574           14 LLLMRKAF-----KGTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANPDLPRRF   64 (104)
Q Consensus        14 ~~~ir~~~-----~~pvi~~Ggi~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri   64 (104)
                      .+.+|+..     +.|+++.|||+++.+.++++.| +|.|.+||++...+|....+
T Consensus       157 i~~~~~~~~~~~~~~~i~v~GGI~~~~~~~~~~~G-ad~vvvGsai~~~~d~~~a~  211 (220)
T 2fli_A          157 VATVAKWRDEKGLSFDIEVDGGVDNKTIRACYEAG-ANVFVAGSYLFKASDLVSQV  211 (220)
T ss_dssp             HHHHHHHHHHTTCCCEEEEESSCCTTTHHHHHHHT-CCEEEESHHHHTSSCHHHHH
T ss_pred             HHHHHHHHHhcCCCceEEEECcCCHHHHHHHHHcC-CCEEEEChHHhCCCCHHHHH
Confidence            45667665     5799999999999998888888 89999999999988865443

>2yzr_A Pyridoxal biosynthesis lyase PDXS; redox protein, pyridoxal phosphate, structural genomi NPPSFA; 2.30A {Methanocaldococcus jannaschii}

Probab=97.23  E-value=0.00057  Score=52.69  Aligned_cols=47  Identities=23%  Similarity=0.273  Sum_probs=38.9

Q ss_pred             hHHHHHHHHcCCeE--EEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCc
Q 046574           12 HSLLLMRKAFKGTF--LVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPD   59 (104)
Q Consensus        12 ~~~~~ir~~~~~pv--i~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPd   59 (104)
                      +.+..+++..++||  |+.||| |++++..+++.| +|.|++|+.++..+|
T Consensus       230 ell~~i~~~~~IPVV~VAeGGI~Tpeda~~~l~~G-aDgV~VGsaI~~a~d  279 (330)
T 2yzr_A          230 EVLLEVKKLGRLPVVNFAAGGVATPADAALMMQLG-SDGVFVGSGIFKSEN  279 (330)
T ss_dssp             HHHHHHHHHTSCSSEEEECSCCCSHHHHHHHHHTT-CSCEEESHHHHTSSC
T ss_pred             HHHHHHHHhCCCCeEEEEECCCCCHHHHHHHHHcC-cCEEeeHHHHhcCCC
Confidence            44556777677887  699999 899999999997 899999999995444

>1jvn_A Glutamine, bifunctional histidine biosynthesis protein hishf; substrate channeling, amidotransferase, TIM-barrel AS A SUBS tunnel; HET: 143; 2.10A {Saccharomyces cerevisiae} SCOP: c.1.2.1 c.23.16.1 PDB: 1ox4_B* 1ox5_A* 1ox6_A 1ox4_A

Probab=97.21  E-value=0.00072  Score=54.74  Aligned_cols=54  Identities=17%  Similarity=0.116  Sum_probs=45.7

Q ss_pred             hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHh
Q 046574           12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLPRRFE   65 (104)
Q Consensus        12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~   65 (104)
                      +..+.+++.+++|||++||+ +++++.++++...+|.|.+||.+..++-....++
T Consensus       486 ~li~~l~~~~~iPVIasGGi~s~~d~~~~~~~~G~~gvivg~a~~~~~~~~~e~~  540 (555)
T 1jvn_A          486 ELIEHVKDAVKIPVIASSGAGVPEHFEEAFLKTRADACLGAGMFHRGEFTVNDVK  540 (555)
T ss_dssp             HHHHHHHHHCSSCEEECSCCCSHHHHHHHHHHSCCSEEEESHHHHTTSCCHHHHH
T ss_pred             HHHHHHHHhCCccEEEECCCCCHHHHHHHHHhcCChHHHHHHHHHcCCCCHHHHH
Confidence            46677888889999999999 9999999998444899999999999986655554

>3vkj_A Isopentenyl-diphosphate delta-isomerase; type 2 isopentenyl diphosphate isomerase; HET: FNR; 1.70A {Sulfolobus shibatae} PDB: 2zrv_A* 2zrw_A* 2zrx_A* 2zry_A* 2zrz_A* 3b03_A* 3b04_A* 3b05_A* 3b06_A* 2zru_A*

Probab=97.21  E-value=0.00063  Score=52.78  Aligned_cols=43  Identities=30%  Similarity=0.344  Sum_probs=37.3

Q ss_pred             HHHHHHHHcC-CeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhh
Q 046574           13 SLLLMRKAFK-GTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLA   56 (104)
Q Consensus        13 ~~~~ir~~~~-~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~la   56 (104)
                      .+..+++.++ +|||++||| ++.++.+++.-| +|+|.+||+++.
T Consensus       257 ~l~~v~~~~~~ipvia~GGI~~~~d~~kal~lG-A~~v~ig~~~l~  301 (368)
T 3vkj_A          257 SIMEVRYSVPDSFLVGSGGIRSGLDAAKAIALG-ADIAGMALPVLK  301 (368)
T ss_dssp             HHHHHHHHSTTCEEEEESSCCSHHHHHHHHHHT-CSEEEECHHHHH
T ss_pred             HHHHHHHHcCCCcEEEECCCCCHHHHHHHHHcC-CCEEEEcHHHHH
Confidence            3445777774 799999999 999999999998 899999999994

>3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp}

Probab=97.19  E-value=0.00052  Score=49.85  Aligned_cols=49  Identities=18%  Similarity=0.153  Sum_probs=39.3

Q ss_pred             hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHHHH
Q 046574           12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLPRR   63 (104)
Q Consensus        12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~r   63 (104)
                      +..+.+++. +.|||+.||| +++++.++++.| +|.|.+|..+. +|+.+.+
T Consensus       172 ~li~~l~~~-~ipvIA~GGI~t~~d~~~~~~~G-adgV~VGsai~-~p~~~~~  221 (229)
T 3q58_A          172 AMVTQLSHA-GCRVIAEGRYNTPALAANAIEHG-AWAVTVGSAIT-RIEHICQ  221 (229)
T ss_dssp             HHHHHHHTT-TCCEEEESSCCSHHHHHHHHHTT-CSEEEECHHHH-CHHHHHH
T ss_pred             HHHHHHHHc-CCCEEEECCCCCHHHHHHHHHcC-CCEEEEchHhc-ChHHHHH
Confidence            345566666 7899999999 899999999998 89999997766 5655433

>3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex, oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium parvum}

Probab=97.15  E-value=0.00032  Score=54.22  Aligned_cols=45  Identities=29%  Similarity=0.380  Sum_probs=40.1

Q ss_pred             HcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHh
Q 046574           20 AFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLPRRFE   65 (104)
Q Consensus        20 ~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~   65 (104)
                      ..++|||+.||| +++++.+++..| +|.|.+|+.|+..++.+....
T Consensus       205 ~~~iPVIA~GGI~~~~di~kala~G-Ad~V~vGs~~~~t~Esp~~~~  250 (361)
T 3khj_A          205 KFGIPIIADGGIRYSGDIGKALAVG-ASSVMIGSILAGTEESPGEKE  250 (361)
T ss_dssp             HHTCCEEEESCCCSHHHHHHHHHHT-CSEEEESTTTTTBTTSSCEEE
T ss_pred             hcCCeEEEECCCCCHHHHHHHHHcC-CCEEEEChhhhcCCcCCcchh
Confidence            357899999999 999999999999 899999999999999875543

>3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} SCOP: c.1.2.0

Probab=97.10  E-value=0.00084  Score=48.81  Aligned_cols=48  Identities=19%  Similarity=0.124  Sum_probs=39.4

Q ss_pred             hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHHH
Q 046574           12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLPR   62 (104)
Q Consensus        12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~   62 (104)
                      +..+.+++. +.|||+.||| +++++.++++.| +|.|.+|..+. +|..+.
T Consensus       172 ~~i~~l~~~-~ipvIA~GGI~t~~d~~~~~~~G-adgV~VGsal~-~p~~~~  220 (232)
T 3igs_A          172 PLVKALHDA-GCRVIAEGRYNSPALAAEAIRYG-AWAVTVGSAIT-RLEHIC  220 (232)
T ss_dssp             HHHHHHHHT-TCCEEEESCCCSHHHHHHHHHTT-CSEEEECHHHH-CHHHHH
T ss_pred             HHHHHHHhc-CCcEEEECCCCCHHHHHHHHHcC-CCEEEEehHhc-CHHHHH
Confidence            355667776 8899999999 899999999998 89999997776 565443

>1mzh_A Deoxyribose-phosphate aldolase; alpha-beta barrel, structural genomics, PSI, protein structure initiative; 2.00A {Aquifex aeolicus} SCOP: c.1.10.1

Probab=97.08  E-value=0.00095  Score=48.15  Aligned_cols=42  Identities=21%  Similarity=0.247  Sum_probs=36.2

Q ss_pred             hHHHHHHHHc--CCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHH
Q 046574           12 HSLLLMRKAF--KGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFF   54 (104)
Q Consensus        12 ~~~~~ir~~~--~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~   54 (104)
                      +..+.+++.+  ++||+++||| |+++|.+.++.| +|+|+.+++.
T Consensus       163 ~~i~~v~~~v~~~ipVia~GGI~t~~da~~~l~aG-A~~iG~s~~~  207 (225)
T 1mzh_A          163 EEVRLIKSSAKGRIKVKASGGIRDLETAISMIEAG-ADRIGTSSGI  207 (225)
T ss_dssp             HHHHHHHHHHTTSSEEEEESSCCSHHHHHHHHHTT-CSEEEESCHH
T ss_pred             HHHHHHHHHhCCCCcEEEECCCCCHHHHHHHHHhC-chHHHHccHH
Confidence            4567788887  5799999999 999999999998 8999988764

>2c6q_A GMP reductase 2; TIM barrel, metal-binding, NADP, oxidoreductase, potassium; HET: IMP NDP; 1.70A {Homo sapiens} PDB: 2bzn_A* 2a7r_A* 2ble_A* 2bwg_A*

Probab=97.04  E-value=0.00083  Score=51.61  Aligned_cols=38  Identities=32%  Similarity=0.558  Sum_probs=34.7

Q ss_pred             cCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCc
Q 046574           21 FKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPD   59 (104)
Q Consensus        21 ~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPd   59 (104)
                      .++|||+.||| ++.++.++|.-| +|+|.+||+|+..++
T Consensus       222 ~~ipvIa~GGI~~g~di~kAlalG-A~~V~vG~~fl~~~E  260 (351)
T 2c6q_A          222 LKGHIISDGGCSCPGDVAKAFGAG-ADFVMLGGMLAGHSE  260 (351)
T ss_dssp             TTCEEEEESCCCSHHHHHHHHHTT-CSEEEESTTTTTBTT
T ss_pred             cCCcEEEeCCCCCHHHHHHHHHcC-CCceeccHHHhcCcc
Confidence            47899999999 999999999999 899999999997644

>3kts_A Glycerol uptake operon antiterminator regulatory; structural genomics, PSI-2, protein structur initiative; HET: UNL; 2.75A {Listeria monocytogenes str}

Probab=97.04  E-value=0.00075  Score=48.38  Aligned_cols=44  Identities=25%  Similarity=0.263  Sum_probs=39.1

Q ss_pred             chHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHh
Q 046574           11 PHSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFL   55 (104)
Q Consensus        11 ~~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~l   55 (104)
                      +...+.+++.++.|+|+.|+| +.++++++++.| +|.|+.+...|
T Consensus       139 p~iI~~i~~~~~~PiIaGGlI~~~edv~~al~aG-A~aVsTs~~~L  183 (192)
T 3kts_A          139 PEQVQKMTQKLHIPVIAGGLIETSEQVNQVIASG-AIAVTTSNKHL  183 (192)
T ss_dssp             HHHHHHHHHHHCCCEEEESSCCSHHHHHHHHTTT-EEEEEECCGGG
T ss_pred             HHHHHHHHHhcCCCEEEECCcCCHHHHHHHHHcC-CeEEEeCCHHH
Confidence            456778999999999999999 999999999999 79999887655

>2agk_A 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) methylideneamino] imidazole-4-carboxamide...; TIM alpha/beta barrel; HET: CIT; 1.30A {Saccharomyces cerevisiae}

Probab=97.03  E-value=0.00098  Score=49.20  Aligned_cols=46  Identities=13%  Similarity=0.056  Sum_probs=40.6

Q ss_pred             hHHHHHHHHc----CCeEEEeCCC-CHHHHHHHHHc--CCCcEEecchHH--hhCC
Q 046574           12 HSLLLMRKAF----KGTFLVAGGY-DREDGNKAIAE--GRADLVVYGRFF--LANP   58 (104)
Q Consensus        12 ~~~~~ir~~~----~~pvi~~Ggi-~~~~ae~~l~~--g~~DlVa~gR~~--lanP   58 (104)
                      +..+.+++.+    ++|||++||+ ++++++++++.  | +|.|.+||.+  ..+|
T Consensus       191 eli~~l~~~~~~~~~iPVIasGGi~s~ed~~~l~~~~~G-~~gvivg~al~l~~g~  245 (260)
T 2agk_A          191 LLVSKLFEWTKDYDDLKIVYAGGAKSVDDLKLVDELSHG-KVDLTFGSSLDIFGGN  245 (260)
T ss_dssp             HHHHHHHHHHTTCSSCEEEEESCCCCTHHHHHHHHHHTT-CEEEECCTTBGGGTCS
T ss_pred             HHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHhcCC-CCEEEeeCCHHHcCCC
Confidence            4667788888    8999999999 99999999987  6 8999999997  6666

>3o63_A Probable thiamine-phosphate pyrophosphorylase; thiamin biosynthesis, TIM barrel, transferase; 2.35A {Mycobacterium tuberculosis}

Probab=97.03  E-value=0.00077  Score=49.51  Aligned_cols=52  Identities=15%  Similarity=0.148  Sum_probs=42.4

Q ss_pred             HHHHHHHH--cCCeEEEeCCCCHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHh
Q 046574           13 SLLLMRKA--FKGTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANPDLPRRFE   65 (104)
Q Consensus        13 ~~~~ir~~--~~~pvi~~Ggi~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~   65 (104)
                      .++.+++.  .+.||++.|||+++.+.++++.| +|.|++++.++..+|-...++
T Consensus       180 ~l~~~~~~~~~~iPvvAiGGI~~~ni~~~~~aG-a~gvav~sai~~a~dp~~a~~  233 (243)
T 3o63_A          180 LVRVAAELGGDDKPWFAIGGINAQRLPAVLDAG-ARRIVVVRAITSADDPRAAAE  233 (243)
T ss_dssp             HHHHHHTC---CCCEEEESSCCTTTHHHHHHTT-CCCEEESHHHHTCSSHHHHHH
T ss_pred             HHHHHHHhccCCCCEEEecCCCHHHHHHHHHcC-CCEEEEeHHHhCCCCHHHHHH
Confidence            44556555  46899999999999999999999 899999999999888655443

>2v82_A 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; lyase, kdpgal; HET: KDP; 2.1A {Escherichia coli} PDB: 2v81_A*

Probab=97.02  E-value=0.00043  Score=48.65  Aligned_cols=45  Identities=13%  Similarity=0.149  Sum_probs=38.4

Q ss_pred             hHHHHHHHHcC--CeEEEeCCCCHHHHHHHHHcCCCcEEecchHHhhC
Q 046574           12 HSLLLMRKAFK--GTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLAN   57 (104)
Q Consensus        12 ~~~~~ir~~~~--~pvi~~Ggi~~~~ae~~l~~g~~DlVa~gR~~lan   57 (104)
                      ...+.+++.++  .||++.|||+++.+.++++.| +|.|++|+.+...
T Consensus       136 ~~~~~l~~~~~~~ipvia~GGI~~~~i~~~~~~G-a~gv~vGsai~~~  182 (212)
T 2v82_A          136 QYIKALKAVLPSDIAVFAVGGVTPENLAQWIDAG-CAGAGLGSDLYRA  182 (212)
T ss_dssp             HHHHHHHTTSCTTCEEEEESSCCTTTHHHHHHHT-CSEEEECTTTCCT
T ss_pred             HHHHHHHHhccCCCeEEEeCCCCHHHHHHHHHcC-CCEEEEChHHhCC
Confidence            34556677775  799999999999999999988 8999999999876

>2zbt_A Pyridoxal biosynthesis lyase PDXS; pyridoxine biosynthesis, structural genomics, NPPSFA; 1.65A {Thermus thermophilus} PDB: 2iss_A*

Probab=96.98  E-value=0.001  Score=49.22  Aligned_cols=46  Identities=20%  Similarity=0.186  Sum_probs=39.6

Q ss_pred             HHHHHHHHcCCeEE--EeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCc
Q 046574           13 SLLLMRKAFKGTFL--VAGGY-DREDGNKAIAEGRADLVVYGRFFLANPD   59 (104)
Q Consensus        13 ~~~~ir~~~~~pvi--~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPd   59 (104)
                      ..+.+++..+.|++  +.||| +++++.++++.| +|.|.+|+.++..+|
T Consensus       198 ~i~~l~~~~~~pvi~~a~GGI~~~e~i~~~~~aG-adgvvvGsai~~~~d  246 (297)
T 2zbt_A          198 LVKWVHDHGRLPVVNFAAGGIATPADAALMMHLG-MDGVFVGSGIFKSGD  246 (297)
T ss_dssp             HHHHHHHHSSCSSCEEBCSSCCSHHHHHHHHHTT-CSEEEECGGGGGSSC
T ss_pred             HHHHHHHhcCCCcEEEeeCCCCCHHHHHHHHHcC-CCEEEEchHHhCCCC
Confidence            45667777778988  99999 999999999998 899999999996554

>4fo4_A Inosine 5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.03A {Vibrio cholerae o1 biovar el tor} PDB: 4ff0_A* 4hlv_A* 4fez_A

Probab=96.92  E-value=0.001  Score=51.56  Aligned_cols=43  Identities=30%  Similarity=0.444  Sum_probs=38.4

Q ss_pred             HcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHHHH
Q 046574           20 AFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLPRR   63 (104)
Q Consensus        20 ~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~r   63 (104)
                      ..++|||+.||| ++.++.+++..| +|.|.+|+.|+..++-+-.
T Consensus       209 ~~~iPVIA~GGI~~~~di~kala~G-Ad~V~vGs~f~~t~Esp~~  252 (366)
T 4fo4_A          209 EYGIPVIADGGIRFSGDISKAIAAG-ASCVMVGSMFAGTEEAPGE  252 (366)
T ss_dssp             GGTCCEEEESCCCSHHHHHHHHHTT-CSEEEESTTTTTBTTSSSC
T ss_pred             hcCCeEEEeCCCCCHHHHHHHHHcC-CCEEEEChHhhcCCCCCch
Confidence            457899999999 999999999999 7999999999999886543

>4adt_A Pyridoxine biosynthetic enzyme PDX1 homologue, PU; transferase, pyridoxal 5-phosphate biosynthesis; 2.42A {Plasmodium berghei} PDB: 4adu_A* 4ads_A

Probab=96.92  E-value=0.0018  Score=48.98  Aligned_cols=49  Identities=24%  Similarity=0.292  Sum_probs=41.1

Q ss_pred             hHHHHHHHHcCCeEE--EeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHH
Q 046574           12 HSLLLMRKAFKGTFL--VAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLP   61 (104)
Q Consensus        12 ~~~~~ir~~~~~pvi--~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~   61 (104)
                      +.+..+++.++.||+  +.||| +++++..+++.| +|.|.+|+.++..+|..
T Consensus       197 ~ll~~i~~~~~iPVivvA~GGI~t~~dv~~~~~~G-AdgVlVGsai~~a~dp~  248 (297)
T 4adt_A          197 DLILLTRKLKRLPVVNFAAGGIATPADAAMCMQLG-MDGVFVGSGIFESENPQ  248 (297)
T ss_dssp             HHHHHHHHHTSCSSEEEEESCCCSHHHHHHHHHTT-CSCEEESHHHHTSSCHH
T ss_pred             HHHHHHHHhcCCCeEEEecCCCCCHHHHHHHHHcC-CCEEEEhHHHHcCCCHH
Confidence            345667777777776  89999 999999999998 89999999999876643

>3cwo_X Beta/alpha-barrel protein based on 1THF and 1TMY; XRAY, CHEY, HISF, half barrel, de novo protein; 3.10A {Thermotoga maritima} PDB: 2lle_A

Probab=96.91  E-value=0.0023  Score=44.07  Aligned_cols=53  Identities=19%  Similarity=0.149  Sum_probs=43.8

Q ss_pred             HHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHhh
Q 046574           13 SLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEF   66 (104)
Q Consensus        13 ~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~~   66 (104)
                      ....+++..+.|+|+.||+ +++...+++..| +|.+.+|+.+..+|.-+..+++
T Consensus       165 ~i~~~~~~~~~Pvia~~g~~~~~~~~~~~~~G-~~~~~vg~a~~~~~~~~~~~~~  218 (237)
T 3cwo_X          165 MIRFVRPLTTLPIIASGGAGKMEHFLEAFLAG-ADAALAASVFHFREIDVRELKE  218 (237)
T ss_dssp             HHHHHGGGCCSCEEEESCCCSHHHHHHHHHHT-CSEEEESHHHHTTSSCHHHHHH
T ss_pred             HHHHHHHhcCCCEEecCCCCCHHHHHHHHHcC-cHHHhhhHHHHcCCCCHHHHHH
Confidence            4455666667899999999 899999999888 8999999999999976666544

>3qja_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, T structural genomics consortium, TBSGC, lyase; 1.29A {Mycobacterium tuberculosis} PDB: 3t40_A* 3t44_A* 3t55_A* 3t78_A* 4fb7_A*

Probab=96.91  E-value=0.0027  Score=47.27  Aligned_cols=53  Identities=15%  Similarity=0.137  Sum_probs=44.1

Q ss_pred             hHHHHHHHHc--CCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHh
Q 046574           12 HSLLLMRKAF--KGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLPRRFE   65 (104)
Q Consensus        12 ~~~~~ir~~~--~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~   65 (104)
                      +....+++.+  +.|||+.||| +++++.++++.| +|.|.+|..++..+|.-..++
T Consensus       201 ~~~~~l~~~v~~~~pvVaegGI~t~edv~~l~~~G-adgvlVGsal~~a~dp~~~~~  256 (272)
T 3qja_A          201 DCFARIAPGLPSSVIRIAESGVRGTADLLAYAGAG-ADAVLVGEGLVTSGDPRAAVA  256 (272)
T ss_dssp             THHHHHGGGSCTTSEEEEESCCCSHHHHHHHHHTT-CSEEEECHHHHTCSCHHHHHH
T ss_pred             HHHHHHHHhCcccCEEEEECCCCCHHHHHHHHHcC-CCEEEEcHHHhCCCCHHHHHH
Confidence            3455677777  5799999999 799999999988 899999999999888655444

>2qjg_A Putative aldolase MJ0400; beta-alpha barrel, lyase; HET: F2P; 2.60A {Methanocaldococcus jannaschii} PDB: 2qjh_A 2qji_A

Probab=96.87  E-value=0.0035  Score=45.54  Aligned_cols=52  Identities=27%  Similarity=0.285  Sum_probs=40.7

Q ss_pred             hHHHHHHHHcCCeEEEeCCCC---HHH----HHHHHHcCCCcEEecchHHhhCCcHHHHH
Q 046574           12 HSLLLMRKAFKGTFLVAGGYD---RED----GNKAIAEGRADLVVYGRFFLANPDLPRRF   64 (104)
Q Consensus        12 ~~~~~ir~~~~~pvi~~Ggi~---~~~----ae~~l~~g~~DlVa~gR~~lanPdl~~ri   64 (104)
                      +..+.+++.++.||++.|||+   .++    +.++++.| +|.|++||.++..||....+
T Consensus       192 ~~l~~i~~~~~ipvva~GGi~~~~~~~~~~~~~~~~~~G-a~gv~vg~~i~~~~~~~~~~  250 (273)
T 2qjg_A          192 DSFRDVVKGCPAPVVVAGGPKTNTDEEFLQMIKDAMEAG-AAGVAVGRNIFQHDDVVGIT  250 (273)
T ss_dssp             HHHHHHHHHCSSCEEEECCSCCSSHHHHHHHHHHHHHHT-CSEEECCHHHHTSSSHHHHH
T ss_pred             HHHHHHHHhCCCCEEEEeCCCCCCHHHHHHHHHHHHHcC-CcEEEeeHHhhCCCCHHHHH
Confidence            455667777789999999994   666    56666778 79999999999999765443

>1tqj_A Ribulose-phosphate 3-epimerase; beta-alpha barrel epimerase, isomerase; 1.60A {Synechocystis SP} SCOP: c.1.2.2

Probab=96.85  E-value=0.0017  Score=46.95  Aligned_cols=52  Identities=17%  Similarity=0.316  Sum_probs=43.3

Q ss_pred             hHHHHHHHHc-----CCeEEEeCCCCHHHHHHHHHcCCCcEEecchHHhhCCcHHHHH
Q 046574           12 HSLLLMRKAF-----KGTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANPDLPRRF   64 (104)
Q Consensus        12 ~~~~~ir~~~-----~~pvi~~Ggi~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri   64 (104)
                      +..+.+|+..     +.|+.+-|||+.+.+.++++.| +|.|.+|+.+...+|....+
T Consensus       158 ~~i~~lr~~~~~~~~~~~I~v~GGI~~~~~~~~~~aG-ad~vvvGSai~~a~d~~~~~  214 (230)
T 1tqj_A          158 PKIRALRQMCDERGLDPWIEVDGGLKPNNTWQVLEAG-ANAIVAGSAVFNAPNYAEAI  214 (230)
T ss_dssp             HHHHHHHHHHHHHTCCCEEEEESSCCTTTTHHHHHHT-CCEEEESHHHHTSSCHHHHH
T ss_pred             HHHHHHHHHHHhcCCCCcEEEECCcCHHHHHHHHHcC-CCEEEECHHHHCCCCHHHHH
Confidence            3556677777     6799999999889999999888 89999999999988865444

>3ceu_A Thiamine phosphate pyrophosphorylase; TIM barrel-like protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacteroides thetaiotaomicron vpi-5482}

Probab=96.82  E-value=0.0014  Score=46.37  Aligned_cols=46  Identities=17%  Similarity=0.084  Sum_probs=38.5

Q ss_pred             HHHHHHHH--cCCeEEEeCCCCHHHHHHHHHcCCCcEEecchHHhhCCc
Q 046574           13 SLLLMRKA--FKGTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANPD   59 (104)
Q Consensus        13 ~~~~ir~~--~~~pvi~~Ggi~~~~ae~~l~~g~~DlVa~gR~~lanPd   59 (104)
                      .++.+++.  .+.|||+.|||+++.+.++++.| ++.|++++.+...+|
T Consensus       133 ~l~~~~~~~~~~iPviaiGGI~~~nv~~~~~~G-a~gVav~s~i~~~~d  180 (210)
T 3ceu_A          133 ELREAQKAKIIDSKVMALGGINEDNLLEIKDFG-FGGAVVLGDLWNKFD  180 (210)
T ss_dssp             HHHHHHHTTCSSTTEEEESSCCTTTHHHHHHTT-CSEEEESHHHHTTCC
T ss_pred             HHHHHHHhcCCCCCEEEECCCCHHHHHHHHHhC-CCEEEEhHHhHcCCC
Confidence            44556665  47899999999999999999988 799999999987554

>2yw3_A 4-hydroxy-2-oxoglutarate aldolase/2-deydro-3- deoxyphosphogluconate aldolase; structural genomics, NPPSFA; 1.67A {Thermus thermophilus} PDB: 2yw4_A

Probab=96.78  E-value=0.0016  Score=46.37  Aligned_cols=47  Identities=28%  Similarity=0.303  Sum_probs=41.1

Q ss_pred             hHHHHHHHHc-CCeEEEeCCCCHHHHHHHHHcCCCcEEecchHHhhCCcH
Q 046574           12 HSLLLMRKAF-KGTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANPDL   60 (104)
Q Consensus        12 ~~~~~ir~~~-~~pvi~~Ggi~~~~ae~~l~~g~~DlVa~gR~~lanPdl   60 (104)
                      ..++.++..+ +.|+++.|||+++.+.+.++.| +|.|++|..+.. +||
T Consensus       140 ~~lk~l~~~~~~ipvvaiGGI~~~n~~~~l~aG-a~~vavgSai~~-~d~  187 (207)
T 2yw3_A          140 RVLRAYAEVFPEVRFLPTGGIKEEHLPHYAALP-NLLAVGGSWLLQ-GNL  187 (207)
T ss_dssp             HHHHHHHHHCTTCEEEEBSSCCGGGHHHHHTCS-SBSCEEESGGGS-SCH
T ss_pred             HHHHHHHhhCCCCcEEEeCCCCHHHHHHHHhCC-CcEEEEehhhhC-CCH
Confidence            4567788888 6899999999999999999999 799999999887 775

>3ffs_A Inosine-5-monophosphate dehydrogenase; beta-alpha barrel, TIM fold, oxidoreductase; 3.19A {Cryptosporidium parvum}

Probab=96.78  E-value=0.002  Score=50.60  Aligned_cols=49  Identities=24%  Similarity=0.330  Sum_probs=40.6

Q ss_pred             HHHHHHH---cCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHHHH
Q 046574           14 LLLMRKA---FKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLPRR   63 (104)
Q Consensus        14 ~~~ir~~---~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~r   63 (104)
                      ...+++.   .++|||+.||| +++++.+++..| +|.|.+|+.|+..++-+-.
T Consensus       235 l~~v~~~~~~~~IPVIA~GGI~~~~di~kalalG-Ad~V~vGt~f~~t~Es~~~  287 (400)
T 3ffs_A          235 IEKCSSVASKFGIPIIADGGIRYSGDIGKALAVG-ASSVMIGSILAGTEESPGE  287 (400)
T ss_dssp             HHHHHHHHTTTTCCEEEESCCCSHHHHHHHHTTT-CSEEEECGGGTTBTTSSCC
T ss_pred             HHHHHHHHHhcCCCEEecCCCCCHHHHHHHHHcC-CCEEEEChHHhcCCCCCch
Confidence            3445443   46899999999 999999999998 8999999999999876543

>1vc4_A Indole-3-glycerol phosphate synthase; lyase, tryptophan biosynthesis, riken structural genomics/PR initiative, RSGI, structural genomics; 1.80A {Thermus thermophilus} SCOP: c.1.2.4

Probab=96.74  E-value=0.0024  Score=47.02  Aligned_cols=51  Identities=20%  Similarity=0.316  Sum_probs=42.6

Q ss_pred             HHHHHHHHc-----CCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHh
Q 046574           13 SLLLMRKAF-----KGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLPRRFE   65 (104)
Q Consensus        13 ~~~~ir~~~-----~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~   65 (104)
                      ....+.+.+     +.|+|+.||| +++++.++.+ | +|.|.+|..++..+|....++
T Consensus       194 ~~~~L~~~i~~~~~~~~vIAegGI~s~~dv~~l~~-G-a~gvlVGsAl~~~~d~~~~~~  250 (254)
T 1vc4_A          194 TAPRLGRLARKRGFGGVLVAESGYSRKEELKALEG-L-FDAVLIGTSLMRAPDLEAALR  250 (254)
T ss_dssp             HHHHHHHHHHHTTCCSEEEEESCCCSHHHHHTTTT-T-CSEEEECHHHHTSSCHHHHHH
T ss_pred             HHHHHHHhCccccCCCeEEEEcCCCCHHHHHHHHc-C-CCEEEEeHHHcCCCCHHHHHH
Confidence            344566655     6799999999 7999999998 7 899999999999999877654

>1wv2_A Thiazole moeity, thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI; 2.90A {Pseudomonas aeruginosa} SCOP: c.1.31.1

Probab=96.70  E-value=0.0045  Score=46.41  Aligned_cols=47  Identities=21%  Similarity=0.268  Sum_probs=41.2

Q ss_pred             hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhh--CCc
Q 046574           12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLA--NPD   59 (104)
Q Consensus        12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~la--nPd   59 (104)
                      +..+.+++..++|||+.||| +|++|..+++-| +|.|.+|-.+..  ||.
T Consensus       177 ~lI~~I~e~~~vPVI~eGGI~TPsDAa~AmeLG-AdgVlVgSAI~~a~dP~  226 (265)
T 1wv2_A          177 YNLRIILEEAKVPVLVDAGVGTASDAAIAMELG-CEAVLMNTAIAHAKDPV  226 (265)
T ss_dssp             HHHHHHHHHCSSCBEEESCCCSHHHHHHHHHHT-CSEEEESHHHHTSSSHH
T ss_pred             HHHHHHHhcCCCCEEEeCCCCCHHHHHHHHHcC-CCEEEEChHHhCCCCHH
Confidence            56788888888999999999 999999999998 899999998865  454

>1q6o_A Humps, 3-keto-L-gulonate 6-phosphate decarboxylase, D-; beta barrel, lyase; HET: LG6; 1.20A {Escherichia coli} SCOP: c.1.2.3 PDB: 1kw1_A* 1q6l_A* 1kv8_A* 1q6q_A* 1q6r_A* 1xbv_A* 1so5_A* 1so4_A* 1xby_A* 1so3_A* 1so6_A* 1xbz_A* 1xbx_A*

Probab=96.68  E-value=0.0014  Score=46.51  Aligned_cols=48  Identities=15%  Similarity=0.082  Sum_probs=40.4

Q ss_pred             hHHHHHHHHc--CCeEEEeCCCCHHHHHHHHHcCCCcEEecchHHhhCCcH
Q 046574           12 HSLLLMRKAF--KGTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANPDL   60 (104)
Q Consensus        12 ~~~~~ir~~~--~~pvi~~Ggi~~~~ae~~l~~g~~DlVa~gR~~lanPdl   60 (104)
                      +..+.+|+..  +.|+++.|||+++.+.++++.| +|.|.+||+....+|-
T Consensus       151 ~~i~~lr~~~~~~~~i~v~GGI~~~~~~~~~~aG-ad~ivvG~~I~~a~dp  200 (216)
T 1q6o_A          151 ADITAIKRLSDMGFKVTVTGGLALEDLPLFKGIP-IHVFIAGRSIRDAASP  200 (216)
T ss_dssp             HHHHHHHHHHHTTCEEEEESSCCGGGGGGGTTSC-CSEEEESHHHHTSSCH
T ss_pred             HHHHHHHHhcCCCCcEEEECCcChhhHHHHHHcC-CCEEEEeehhcCCCCH
Confidence            4556777777  4579999999999999999888 7999999999987764

>3ovp_A Ribulose-phosphate 3-epimerase; iron binding, isomerase; HET: XPE; 1.70A {Homo sapiens} SCOP: c.1.2.0 PDB: 3ovq_A* 3ovr_A* 3qc3_A

Probab=96.63  E-value=0.004  Score=45.12  Aligned_cols=51  Identities=22%  Similarity=0.343  Sum_probs=42.0

Q ss_pred             HHHHHHHcC-CeEEEeCCCCHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHh
Q 046574           14 LLLMRKAFK-GTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANPDLPRRFE   65 (104)
Q Consensus        14 ~~~ir~~~~-~pvi~~Ggi~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~   65 (104)
                      .+.+|+... .++.+.|||+++.+.++++.| +|.+.+||++...+|....++
T Consensus       160 i~~lr~~~~~~~I~VdGGI~~~t~~~~~~aG-Ad~~VvGsaIf~a~dp~~~~~  211 (228)
T 3ovp_A          160 VHWLRTQFPSLDIEVDGGVGPDTVHKCAEAG-ANMIVSGSAIMRSEDPRSVIN  211 (228)
T ss_dssp             HHHHHHHCTTCEEEEESSCSTTTHHHHHHHT-CCEEEESHHHHTCSCHHHHHH
T ss_pred             HHHHHHhcCCCCEEEeCCcCHHHHHHHHHcC-CCEEEEeHHHhCCCCHHHHHH
Confidence            556776653 588899999999999999999 899999999998888765443

>3jr2_A Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulonate-6-phosphate decarboxylase, ULAD, niaid,CSG bound, biosynthetic protein; HET: MSE; 1.80A {Vibrio cholerae} SCOP: c.1.2.0 PDB: 3ieb_A*

Probab=96.59  E-value=0.00058  Score=48.62  Aligned_cols=48  Identities=19%  Similarity=0.090  Sum_probs=40.3

Q ss_pred             hHHHHHHHHc--CCeEEEeCCCCHHHHHHHHHcCCCcEEecchHHhhCCcH
Q 046574           12 HSLLLMRKAF--KGTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANPDL   60 (104)
Q Consensus        12 ~~~~~ir~~~--~~pvi~~Ggi~~~~ae~~l~~g~~DlVa~gR~~lanPdl   60 (104)
                      ..++.+|+..  +.|+++.|||+++.+.++++.| +|.|++||++...+|-
T Consensus       154 ~~l~~i~~~~~~~~pi~v~GGI~~~~~~~~~~aG-Ad~vvvGsaI~~a~dp  203 (218)
T 3jr2_A          154 DDLDKMRQLSALGIELSITGGIVPEDIYLFEGIK-TKTFIAGRALAGAEGQ  203 (218)
T ss_dssp             HHHHHHHHHHHTTCEEEEESSCCGGGGGGGTTSC-EEEEEESGGGSHHHHH
T ss_pred             HHHHHHHHHhCCCCCEEEECCCCHHHHHHHHHcC-CCEEEEchhhcCCCCH
Confidence            4566787765  6799999999999999999988 8999999998865554

>1tqx_A D-ribulose-5-phosphate 3-epimerase, putative; structural genomics, protein structure initiative, PSI; 2.00A {Plasmodium falciparum} SCOP: c.1.2.2

Probab=96.57  E-value=0.0091  Score=43.33  Aligned_cols=51  Identities=22%  Similarity=0.364  Sum_probs=41.8

Q ss_pred             HHHHHHHHc-CCeEEEeCCCCHHHHHHHHHcCCCcEEecchHHhhCCcHHHHH
Q 046574           13 SLLLMRKAF-KGTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANPDLPRRF   64 (104)
Q Consensus        13 ~~~~ir~~~-~~pvi~~Ggi~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri   64 (104)
                      ..+.+|+.. +.++.+.|||+++.+.++++.| +|.+..|+.+...+|....+
T Consensus       163 ki~~lr~~~~~~~I~VdGGI~~~ti~~~~~aG-Ad~~V~GsaIf~~~d~~~~i  214 (227)
T 1tqx_A          163 KVSFLRKKYKNLNIQVDGGLNIETTEISASHG-ANIIVAGTSIFNAEDPKYVI  214 (227)
T ss_dssp             HHHHHHHHCTTCEEEEESSCCHHHHHHHHHHT-CCEEEESHHHHTCSSHHHHH
T ss_pred             HHHHHHHhccCCeEEEECCCCHHHHHHHHHcC-CCEEEEeHHHhCCCCHHHHH
Confidence            345677766 4688889999999999999999 89999999999887754443

>3tsm_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, ssgcid, seattle structural GE center for infectious disease, lyase; 2.15A {Brucella melitensis} SCOP: c.1.2.0

Probab=96.57  E-value=0.0078  Score=44.97  Aligned_cols=53  Identities=13%  Similarity=0.110  Sum_probs=44.7

Q ss_pred             HHHHHHHHc--CCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHhh
Q 046574           13 SLLLMRKAF--KGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEF   66 (104)
Q Consensus        13 ~~~~ir~~~--~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~~   66 (104)
                      ....+.+.+  +.|+|+-||| +++++..+.+.| +|.|.+|..++..+|....+++
T Consensus       209 ~~~~L~~~ip~~~~vIaesGI~t~edv~~l~~~G-a~gvLVG~almr~~d~~~~~~~  264 (272)
T 3tsm_A          209 VSERLAKMAPSDRLLVGESGIFTHEDCLRLEKSG-IGTFLIGESLMRQHDVAAATRA  264 (272)
T ss_dssp             HHHHHHHHSCTTSEEEEESSCCSHHHHHHHHTTT-CCEEEECHHHHTSSCHHHHHHH
T ss_pred             HHHHHHHhCCCCCcEEEECCCCCHHHHHHHHHcC-CCEEEEcHHHcCCcCHHHHHHH
Confidence            445666777  4699999999 999999999888 8999999999999998766653

>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}

Probab=96.55  E-value=0.0027  Score=50.65  Aligned_cols=47  Identities=26%  Similarity=0.370  Sum_probs=39.1

Q ss_pred             HHHHHHHc---CCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHH
Q 046574           14 LLLMRKAF---KGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLP   61 (104)
Q Consensus        14 ~~~ir~~~---~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~   61 (104)
                      ...+.+..   ++|||+.||| +++++.+++..| +|.|.+|+.|+...+-+
T Consensus       321 l~~v~~~~~~~~iPVIa~GGI~~~~di~kal~~G-Ad~V~vGs~~~~~~Esp  371 (490)
T 4avf_A          321 IANVAAALEGTGVPLIADGGIRFSGDLAKAMVAG-AYCVMMGSMFAGTEEAP  371 (490)
T ss_dssp             HHHHHHHHTTTTCCEEEESCCCSHHHHHHHHHHT-CSEEEECTTTTTBTTSS
T ss_pred             HHHHHHHhccCCCcEEEeCCCCCHHHHHHHHHcC-CCeeeecHHHhcCCCCC
Confidence            34455533   6799999999 999999999999 79999999999877644

>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}

Probab=96.50  E-value=0.0033  Score=50.23  Aligned_cols=40  Identities=33%  Similarity=0.482  Sum_probs=35.7

Q ss_pred             cCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHH
Q 046574           21 FKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLP   61 (104)
Q Consensus        21 ~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~   61 (104)
                      .++|||+.||| +++++.+++..| +|.|.+|+.|+...+-+
T Consensus       333 ~~iPVIa~GGI~~~~di~kala~G-Ad~V~iGs~f~~t~Esp  373 (496)
T 4fxs_A          333 YGIPVIADGGIRFSGDISKAIAAG-ASCVMVGSMFAGTEEAP  373 (496)
T ss_dssp             GTCCEEEESCCCSHHHHHHHHHTT-CSEEEESTTTTTBTTSS
T ss_pred             CCCeEEEeCCCCCHHHHHHHHHcC-CCeEEecHHHhcCCCCC
Confidence            36899999999 999999999998 89999999999877643

>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1

Probab=96.49  E-value=0.0036  Score=49.30  Aligned_cols=41  Identities=29%  Similarity=0.511  Sum_probs=35.9

Q ss_pred             HcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHH
Q 046574           20 AFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLP   61 (104)
Q Consensus        20 ~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~   61 (104)
                      ..++|||+.||| +++++.+++..| +|+|.+||+|+..++-+
T Consensus       334 ~~~ipvia~GGi~~~~di~kal~~G-A~~v~vG~~~~~~~e~~  375 (491)
T 1zfj_A          334 EYGKTIIADGGIKYSGDIVKALAAG-GNAVMLGSMFAGTDEAP  375 (491)
T ss_dssp             HTTCEEEEESCCCSHHHHHHHHHTT-CSEEEESTTTTTBSSCC
T ss_pred             hcCCCEEeeCCCCCHHHHHHHHHcC-CcceeeCHHhhCCCcCc
Confidence            356899999999 999999999998 89999999999765543

>1geq_A Tryptophan synthase alpha-subunit; hyperthermophIle, pyrococ furiosus, X-RAY analysis, stability, calorimetry, lyase; 2.00A {Pyrococcus furiosus} SCOP: c.1.2.4 PDB: 1wdw_A* 2dzu_A 2dzp_A 2e09_A 2dzw_A 2dzs_A 2dzv_A 2dzt_A 2dzx_A

Probab=96.47  E-value=0.0067  Score=43.35  Aligned_cols=44  Identities=25%  Similarity=0.249  Sum_probs=38.2

Q ss_pred             HHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhC
Q 046574           13 SLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLAN   57 (104)
Q Consensus        13 ~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lan   57 (104)
                      ..+.+++.++.||++.||| +++.+.+++..| +|.|.+|+.+...
T Consensus       182 ~i~~l~~~~~~pi~~~GGI~~~e~i~~~~~~G-ad~vivGsai~~~  226 (248)
T 1geq_A          182 LLRRAKRICRNKVAVGFGVSKREHVVSLLKEG-ANGVVVGSALVKI  226 (248)
T ss_dssp             HHHHHHHHCSSCEEEESCCCSHHHHHHHHHTT-CSEEEECHHHHHH
T ss_pred             HHHHHHhhcCCCEEEEeecCCHHHHHHHHHcC-CCEEEEcHHHHhh
Confidence            5567788778899999999 669999999888 8999999998865

>2czd_A Orotidine 5'-phosphate decarboxylase; pyrimidine biosynthesis, orotidine 5'-phosphate decarboxylas (ompdecase), structural genomics; 1.60A {Pyrococcus horikoshii} SCOP: c.1.2.3 PDB: 2cz5_A 2cze_A* 2czf_A*

Probab=96.47  E-value=0.0062  Score=42.89  Aligned_cols=50  Identities=22%  Similarity=0.410  Sum_probs=40.3

Q ss_pred             hHHHHHHHHcCC-eEEEeCCCCHH--HHHHHHHcCCCcEEecchHHhhCCcHHH
Q 046574           12 HSLLLMRKAFKG-TFLVAGGYDRE--DGNKAIAEGRADLVVYGRFFLANPDLPR   62 (104)
Q Consensus        12 ~~~~~ir~~~~~-pvi~~Ggi~~~--~ae~~l~~g~~DlVa~gR~~lanPdl~~   62 (104)
                      +..+.+|+..+. ++|+.|||+++  .+.++++.| +|.|.+||+....+|..+
T Consensus       144 ~~i~~lr~~~~~~~~iv~gGI~~~g~~~~~~~~aG-ad~vvvGr~I~~a~dp~~  196 (208)
T 2czd_A          144 ERIGYIRDRLKEGIKILAPGIGAQGGKAKDAVKAG-ADYIIVGRAIYNAPNPRE  196 (208)
T ss_dssp             HHHHHHHHHSCTTCEEEECCCCSSTTHHHHHHHHT-CSEEEECHHHHTSSSHHH
T ss_pred             HHHHHHHHhCCCCeEEEECCCCCCCCCHHHHHHcC-CCEEEEChHHhcCCCHHH
Confidence            355678888763 78899999766  788999998 799999999998777443

>3sr7_A Isopentenyl-diphosphate delta-isomerase; isopentenyl pyrophosphate isomerase, TIM-barrel; 2.04A {Streptococcus mutans}

Probab=96.47  E-value=0.0028  Score=49.18  Aligned_cols=34  Identities=35%  Similarity=0.347  Sum_probs=31.7

Q ss_pred             CCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhh
Q 046574           22 KGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLA   56 (104)
Q Consensus        22 ~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~la   56 (104)
                      ++|||++||| ++.++.++|.-| +|+|.+||++|.
T Consensus       278 ~ipvia~GGI~~g~Dv~KaLalG-AdaV~ig~~~l~  312 (365)
T 3sr7_A          278 KVEILASGGIRHPLDIIKALVLG-AKAVGLSRTMLE  312 (365)
T ss_dssp             TSEEEECSSCCSHHHHHHHHHHT-CSEEEESHHHHH
T ss_pred             CCeEEEeCCCCCHHHHHHHHHcC-CCEEEECHHHHH
Confidence            4699999999 999999999999 799999999985

>1jvn_A Glutamine, bifunctional histidine biosynthesis protein hishf; substrate channeling, amidotransferase, TIM-barrel AS A SUBS tunnel; HET: 143; 2.10A {Saccharomyces cerevisiae} SCOP: c.1.2.1 c.23.16.1 PDB: 1ox4_B* 1ox5_A* 1ox6_A 1ox4_A

Probab=96.42  E-value=0.0042  Score=50.29  Aligned_cols=52  Identities=23%  Similarity=0.136  Sum_probs=43.6

Q ss_pred             HHHHHHHcCCeEEEeCCC-CH-----------HHHHHHHHcCCCcEEecchHHhh-------------CCcHHHHHhh
Q 046574           14 LLLMRKAFKGTFLVAGGY-DR-----------EDGNKAIAEGRADLVVYGRFFLA-------------NPDLPRRFEF   66 (104)
Q Consensus        14 ~~~ir~~~~~pvi~~Ggi-~~-----------~~ae~~l~~g~~DlVa~gR~~la-------------nPdl~~ri~~   66 (104)
                      .+.+++.+.+||++.||| +.           +.++++++.| +|.|.+|...+.             ||+++.++..
T Consensus       319 i~~i~~~~~ipi~vgGGIr~~~d~~~~~~~~~~~a~~~l~aG-ad~V~igt~~~~~~~~~~~~~~~~~~~~~i~~~~~  395 (555)
T 1jvn_A          319 LKQAAKTVFVPLTVGGGIKDIVDVDGTKIPALEVASLYFRSG-ADKVSIGTDAVYAAEKYYELGNRGDGTSPIETISK  395 (555)
T ss_dssp             HHHHTTTCCSCEEEESSCSCEECTTCCEECHHHHHHHHHHHT-CSEEEECHHHHHHHHHHHHTTSCCCSCSHHHHHHH
T ss_pred             HHHHHhhCCCcEEEeCccccchhcccccchHHHHHHHHHHcC-CCEEEECCHHhhCchhhccccccccCHHHHHHHHH
Confidence            344445567899999999 76           6799999999 899999999987             5899999977

>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*

Probab=96.42  E-value=0.0036  Score=50.24  Aligned_cols=41  Identities=29%  Similarity=0.424  Sum_probs=36.3

Q ss_pred             HcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHH
Q 046574           20 AFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLP   61 (104)
Q Consensus        20 ~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~   61 (104)
                      .+++|||+.||| ++.++.+++..| +|.|.+|++|+.-.+-+
T Consensus       357 ~~~iPVIa~GGI~~~~di~kala~G-A~~V~vGs~~~~~~es~  398 (511)
T 3usb_A          357 KHGIPVIADGGIKYSGDMVKALAAG-AHVVMLGSMFAGVAESP  398 (511)
T ss_dssp             TTTCCEEEESCCCSHHHHHHHHHTT-CSEEEESTTTTTBTTSS
T ss_pred             hCCCcEEEeCCCCCHHHHHHHHHhC-chhheecHHHhcCccCc
Confidence            346899999999 999999999999 89999999998877644

>1rd5_A Tryptophan synthase alpha chain, chloroplast; hydroxamic acid, diboa, dimboa, indole, indole-glycerol-PHOS lyase; 2.02A {Zea mays} SCOP: c.1.2.4 PDB: 1tjr_A

Probab=96.36  E-value=0.0083  Score=43.54  Aligned_cols=43  Identities=21%  Similarity=0.184  Sum_probs=37.4

Q ss_pred             HHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhh
Q 046574           13 SLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLA   56 (104)
Q Consensus        13 ~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~la   56 (104)
                      ..+.+++..+.||++.||| +++.+.++++.| +|.|.+|..+..
T Consensus       192 ~i~~v~~~~~~pI~vgGGI~~~e~~~~~~~~G-AdgvvVGSai~~  235 (262)
T 1rd5_A          192 LIQEVKKVTNKPVAVGFGISKPEHVKQIAQWG-ADGVIIGSAMVR  235 (262)
T ss_dssp             HHHHHHHHCSSCEEEESCCCSHHHHHHHHHTT-CSEEEECHHHHH
T ss_pred             HHHHHHhhcCCeEEEECCcCCHHHHHHHHHcC-CCEEEEChHHHh
Confidence            5567888888899999999 599999999888 899999988764

>3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4

Probab=96.31  E-value=0.0075  Score=44.97  Aligned_cols=43  Identities=19%  Similarity=0.138  Sum_probs=38.3

Q ss_pred             hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHh
Q 046574           12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFL   55 (104)
Q Consensus        12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~l   55 (104)
                      +..+.+|+..+.||++.+|| +++++.+++..| +|.|.+|..++
T Consensus       198 ~~v~~vr~~~~~Pv~vGfGIst~e~~~~~~~~g-ADgvIVGSAiv  241 (271)
T 3nav_A          198 ALLERLQQFDAPPALLGFGISEPAQVKQAIEAG-AAGAISGSAVV  241 (271)
T ss_dssp             HHHHHHHHTTCCCEEECSSCCSHHHHHHHHHTT-CSEEEESHHHH
T ss_pred             HHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcC-CCEEEECHHHH
Confidence            45678888888899999999 899999898888 89999999887

>2h6r_A Triosephosphate isomerase; beta-alpha barrel; 2.30A {Methanocaldococcus jannaschii}

Probab=96.30  E-value=0.013  Score=41.95  Aligned_cols=55  Identities=15%  Similarity=0.170  Sum_probs=43.6

Q ss_pred             cchHHHHHHHHc-CCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHh
Q 046574           10 CPHSLLLMRKAF-KGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLPRRFE   65 (104)
Q Consensus        10 ~~~~~~~ir~~~-~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~   65 (104)
                      .....+.+|+.. +.|++.-||| +++.++.+.+.| +|.|.+|..++.-+|+...++
T Consensus       157 ~~~~~~~ir~~~~~~~ii~ggGI~~~~~~~~~~~~g-aDgvlVGsAi~~~~d~~~~~~  213 (219)
T 2h6r_A          157 VEGTVRAVKEINKDVKVLCGAGISKGEDVKAALDLG-AEGVLLASGVVKAKNVEEAIR  213 (219)
T ss_dssp             SHHHHHHHHHHCTTCEEEECSSCCSHHHHHHHHTTT-CCCEEESHHHHTCSSHHHHHH
T ss_pred             HHHHHHHHHhccCCCeEEEEeCcCcHHHHHHHhhCC-CCEEEEcHHHhCcccHHHHHH
Confidence            345556677765 5799999999 688888877666 899999999999888876654

>1qop_A Tryptophan synthase alpha chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.1.2.4 PDB: 1k8x_A* 1wbj_A* 2clk_A* 2j9z_A* 3cep_A* 1k8y_A* 1a5s_A* 1a50_A* 1c29_A* 1c8v_A* 1c9d_A* 1bks_A* 1cx9_A* 1fuy_A* 1cw2_A* 1k7e_A* 1k7f_A* 1k7x_A* 1k3u_A* 1k8z_A* ...

Probab=96.24  E-value=0.01  Score=43.54  Aligned_cols=44  Identities=18%  Similarity=0.200  Sum_probs=38.8

Q ss_pred             hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhh
Q 046574           12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLA   56 (104)
Q Consensus        12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~la   56 (104)
                      +..+.+|+..+.||++.||| +++++.+++..| +|.|.+|..+..
T Consensus       195 ~~i~~lr~~~~~pi~vggGI~t~e~~~~~~~ag-AD~vVVGSai~~  239 (268)
T 1qop_A          195 HLIEKLKEYHAAPALQGFGISSPEQVSAAVRAG-AAGAISGSAIVK  239 (268)
T ss_dssp             HHHHHHHHTTCCCEEEESSCCSHHHHHHHHHTT-CSEEEECHHHHH
T ss_pred             HHHHHHHhccCCcEEEECCCCCHHHHHHHHHcC-CCEEEEChHHhh
Confidence            56678888888899999999 699999988888 899999999863

>2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1

Probab=96.22  E-value=0.0059  Score=48.34  Aligned_cols=43  Identities=28%  Similarity=0.317  Sum_probs=36.3

Q ss_pred             HHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCC
Q 046574           15 LLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANP   58 (104)
Q Consensus        15 ~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanP   58 (104)
                      ..+.+.+++|||+.||| +..++.++|.-| +|+|.+|++|+...
T Consensus       321 ~~~~~~~~vpVia~GGi~~~~di~kalalG-A~~v~~g~~~~~~~  364 (486)
T 2cu0_A          321 ADRAQEYGLYVIADGGIRYSGDIVKAIAAG-ADAVMLGNLLAGTK  364 (486)
T ss_dssp             HHHHHHHTCEEEEESCCCSHHHHHHHHHTT-CSEEEESTTTTTBT
T ss_pred             HHHHHHcCCcEEecCCCCCHHHHHHHHHcC-CCceeeChhhhcCc
Confidence            34555567899999999 999999999888 89999999999653

>2htm_A Thiazole biosynthesis protein THIG; thiamin biosynthesis, THIG, thermus thermophilus HB8, structural genomics, NPPSFA; 2.30A {Thermus thermophilus}

Probab=96.22  E-value=0.013  Score=43.95  Aligned_cols=44  Identities=16%  Similarity=0.166  Sum_probs=38.8

Q ss_pred             hHHHHHHH-HcC-CeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhh
Q 046574           12 HSLLLMRK-AFK-GTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLA   56 (104)
Q Consensus        12 ~~~~~ir~-~~~-~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~la   56 (104)
                      ..++.+++ ..+ .|||+.||| ++++|..+++-| +|.|.+|.....
T Consensus       166 ~~L~~i~~~~~~~vPVI~~GGI~tpsDAa~AmeLG-AdgVlVgSAI~~  212 (268)
T 2htm_A          166 ALLELFAREKASLPPVVVDAGLGLPSHAAEVMELG-LDAVLVNTAIAE  212 (268)
T ss_dssp             HHHHHHHHTTTTSSCBEEESCCCSHHHHHHHHHTT-CCEEEESHHHHT
T ss_pred             HHHHHHHHhcCCCCeEEEeCCCCCHHHHHHHHHcC-CCEEEEChHHhC
Confidence            45677888 567 899999999 999999999999 899999998876

>2ekc_A AQ_1548, tryptophan synthase alpha chain; structural genomics, lyase, NPPSFA, national project on PROT structural and functional analyses; 2.00A {Aquifex aeolicus}

Probab=96.10  E-value=0.014  Score=42.85  Aligned_cols=44  Identities=23%  Similarity=0.212  Sum_probs=38.1

Q ss_pred             hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhC
Q 046574           12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLAN   57 (104)
Q Consensus        12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lan   57 (104)
                      +..+.+|+..+.||++.+|| +++++.+ +..| +|.|.+|..++..
T Consensus       196 ~~v~~vr~~~~~pv~vG~GI~t~e~~~~-~~~g-ADgvIVGSai~~~  240 (262)
T 2ekc_A          196 KKVEEYRELCDKPVVVGFGVSKKEHARE-IGSF-ADGVVVGSALVKL  240 (262)
T ss_dssp             HHHHHHHHHCCSCEEEESSCCSHHHHHH-HHTT-SSEEEECHHHHHH
T ss_pred             HHHHHHHhhcCCCEEEeCCCCCHHHHHH-HHcC-CCEEEECHHHHhh
Confidence            46677888888899999999 7999999 6777 8999999998864

>3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina}

Probab=96.00  E-value=0.012  Score=43.82  Aligned_cols=43  Identities=21%  Similarity=0.159  Sum_probs=38.0

Q ss_pred             hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHh
Q 046574           12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFL   55 (104)
Q Consensus        12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~l   55 (104)
                      +..+.+|+..+.||++.+|| +++++.+++..| +|.|.+|..++
T Consensus       196 ~~v~~vr~~~~~pv~vGfGI~~~e~~~~~~~~g-ADgvVVGSaiv  239 (267)
T 3vnd_A          196 NILTQLAEFNAPPPLLGFGIAEPEQVRAAIKAG-AAGAISGSAVV  239 (267)
T ss_dssp             HHHHHHHTTTCCCEEECSSCCSHHHHHHHHHTT-CSEEEECHHHH
T ss_pred             HHHHHHHHhcCCCEEEECCcCCHHHHHHHHHcC-CCEEEECHHHH
Confidence            56677888888899999999 899999888888 89999999876

>1eix_A Orotidine 5'-monophosphate decarboxylase; alpha-beta-barrel, protein-inhibitor complex, homodimer, lyase; HET: BMQ; 2.50A {Escherichia coli} SCOP: c.1.2.3 PDB: 1jjk_A* 1l2u_A

Probab=95.96  E-value=0.009  Score=43.41  Aligned_cols=50  Identities=22%  Similarity=0.339  Sum_probs=40.9

Q ss_pred             HHHHHHHcC-CeEEEeCCCCHH-----------HHHHHHHcCCCcEEecchHHhhCCcHHHHH
Q 046574           14 LLLMRKAFK-GTFLVAGGYDRE-----------DGNKAIAEGRADLVVYGRFFLANPDLPRRF   64 (104)
Q Consensus        14 ~~~ir~~~~-~pvi~~Ggi~~~-----------~ae~~l~~g~~DlVa~gR~~lanPdl~~ri   64 (104)
                      .+.+|+..+ .++++.|||+++           .+.++++.| +|++.+||+....+|..+.+
T Consensus       173 i~~lr~~~~~~~i~v~gGI~~~g~~~~dq~rv~t~~~a~~aG-ad~iVvGr~I~~a~dp~~a~  234 (245)
T 1eix_A          173 AVRFKQVFGQEFKLVTPGIRPQGSEAGDQRRIMTPEQALSAG-VDYMVIGRPVTQSVDPAQTL  234 (245)
T ss_dssp             HHHHHHHHCSSSEEEECCBCCTTCCCTTCCSCBCHHHHHHTT-CSEEEECHHHHTSSSHHHHH
T ss_pred             HHHHHHhcCCCCEEEECCcCCCCCCccchhccCCHHHHHHcC-CCEEEECHHHcCCCCHHHHH
Confidence            667888775 578999999777           788999888 79999999999988854443

>1wbh_A KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli} SCOP: c.1.10.1 PDB: 2c0a_A 1wau_A 1eua_A 1eun_A 1fq0_A* 1fwr_A*

Probab=95.94  E-value=0.0032  Score=45.22  Aligned_cols=47  Identities=15%  Similarity=0.207  Sum_probs=38.7

Q ss_pred             chHHHHHHHHc-CCeEEEeCCCCHHHHHHHHHcCCCcEEecchHHhhCC
Q 046574           11 PHSLLLMRKAF-KGTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANP   58 (104)
Q Consensus        11 ~~~~~~ir~~~-~~pvi~~Ggi~~~~ae~~l~~g~~DlVa~gR~~lanP   58 (104)
                      ...++.++..+ +.|++..|||+++.+.+.++.|.++.|+ |..+...+
T Consensus       144 ~~~lk~i~~~~~~ipvvaiGGI~~~n~~~~l~agg~~~v~-gS~i~~~~  191 (214)
T 1wbh_A          144 VKALQAIAGPFSQVRFCPTGGISPANYRDYLALKSVLCIG-GSWLVPAD  191 (214)
T ss_dssp             HHHHHHHHTTCTTCEEEEBSSCCTTTHHHHHTSTTBSCEE-EGGGSCHH
T ss_pred             HHHHHHHhhhCCCCeEEEECCCCHHHHHHHHhcCCCeEEE-eccccChh
Confidence            45667788888 6899999999999999999986689999 87766444

>1ujp_A Tryptophan synthase alpha chain; riken structural genomics/P initiative, RSGI, structural genomics, lyase; HET: CIT; 1.34A {Thermus thermophilus} SCOP: c.1.2.4 PDB: 1wxj_A*

Probab=95.94  E-value=0.013  Score=43.44  Aligned_cols=43  Identities=19%  Similarity=0.119  Sum_probs=37.0

Q ss_pred             hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhC
Q 046574           12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLAN   57 (104)
Q Consensus        12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lan   57 (104)
                      +..+.+|+..+.||++.||| +++++.++  .+ +|.|.+|..++..
T Consensus       192 ~~v~~vr~~~~~Pv~vGfGI~t~e~a~~~--~~-ADgVIVGSAi~~~  235 (271)
T 1ujp_A          192 DLVRRIKARTALPVAVGFGVSGKATAAQA--AV-ADGVVVGSALVRA  235 (271)
T ss_dssp             HHHHHHHTTCCSCEEEESCCCSHHHHHHH--TT-SSEEEECHHHHHH
T ss_pred             HHHHHHHhhcCCCEEEEcCCCCHHHHHHh--cC-CCEEEEChHHhcc
Confidence            56678888888899999999 79999996  56 8999999988754

>2agk_A 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) methylideneamino] imidazole-4-carboxamide...; TIM alpha/beta barrel; HET: CIT; 1.30A {Saccharomyces cerevisiae}

Probab=95.90  E-value=0.004  Score=45.89  Aligned_cols=52  Identities=13%  Similarity=0.093  Sum_probs=45.3

Q ss_pred             hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhC-----CcHHHHHhh
Q 046574           12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLAN-----PDLPRRFEF   66 (104)
Q Consensus        12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lan-----Pdl~~ri~~   66 (104)
                      +..+.+.+.+..||.+.||+ +. ++++++ .| +|-|.+|-.++.|     |+++.++..
T Consensus        66 ~~i~~i~~~~~~pv~vgGGir~~-~~~~~l-~G-a~~Viigs~a~~~~g~~~p~~~~~~~~  123 (260)
T 2agk_A           66 DAAREALQESPQFLQVGGGINDT-NCLEWL-KW-ASKVIVTSWLFTKEGHFQLKRLERLTE  123 (260)
T ss_dssp             HHHHHHHHHSTTTSEEESSCCTT-THHHHT-TT-CSCEEECGGGBCTTCCBCHHHHHHHHH
T ss_pred             HHHHHHHhcCCceEEEeCCCCHH-HHHHHh-cC-CCEEEECcHHHhhcCCCCHHHHHHHHH
Confidence            35567778888999999999 55 899999 87 8999999999999     999998875

>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A*

Probab=95.89  E-value=0.012  Score=46.81  Aligned_cols=36  Identities=28%  Similarity=0.342  Sum_probs=33.0

Q ss_pred             CCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCC
Q 046574           22 KGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANP   58 (104)
Q Consensus        22 ~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanP   58 (104)
                      ++|||+.||| ++.++.+++.-| +|+|.+|++|+.-.
T Consensus       352 ~ipvia~GGi~~~~di~kAlalG-A~~V~iG~~~~~~~  388 (503)
T 1me8_A          352 YIPVCSDGGIVYDYHMTLALAMG-ADFIMLGRYFARFE  388 (503)
T ss_dssp             ECCEEEESCCCSHHHHHHHHHTT-CSEEEESHHHHTBT
T ss_pred             CceEEEeCCCCCHHHHHHHHHcC-CCEEEECchhhccc
Confidence            5899999999 999999999999 79999999998653

>3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, struc genomics, center for structural genomics of infectious DISE csgid; 2.05A {Francisella tularensis subsp}

Probab=95.88  E-value=0.011  Score=43.49  Aligned_cols=41  Identities=12%  Similarity=0.158  Sum_probs=35.7

Q ss_pred             CeEEEeCCCCHHHHHHHHHcCCCcEEecchHHhhCCcHHHHH
Q 046574           23 GTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANPDLPRRF   64 (104)
Q Consensus        23 ~pvi~~Ggi~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri   64 (104)
                      .++.+.|||+++.+.++++.| +|.+.+|+++...+|....+
T Consensus       196 ~~I~VDGGI~~~ti~~~~~aG-AD~~V~GSaIf~a~dp~~~i  236 (246)
T 3inp_A          196 ILLEIDGGVNPYNIAEIAVCG-VNAFVAGSAIFNSDSYKQTI  236 (246)
T ss_dssp             CEEEEESSCCTTTHHHHHTTT-CCEEEESHHHHTSSCHHHHH
T ss_pred             eeEEEECCcCHHHHHHHHHcC-CCEEEEehHHhCCCCHHHHH
Confidence            578889999999999999999 89999999999888875544

>1vhc_A Putative KHG/KDPG aldolase; structural genomics, unknown function; HET: MSE; 1.89A {Haemophilus influenzae} SCOP: c.1.10.1

Probab=95.75  E-value=0.0042  Score=44.98  Aligned_cols=45  Identities=11%  Similarity=0.153  Sum_probs=37.4

Q ss_pred             chHHHHHHHHc-CCeEEEeCCCCHHHHHHHHHcCCCcEEecchHHhh
Q 046574           11 PHSLLLMRKAF-KGTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLA   56 (104)
Q Consensus        11 ~~~~~~ir~~~-~~pvi~~Ggi~~~~ae~~l~~g~~DlVa~gR~~la   56 (104)
                      ...++.++..+ +.|++.+|||+++.+.+.++.|.++.|+ |..+..
T Consensus       145 ~~~lk~l~~~~~~ipvvaiGGI~~~N~~~~l~agga~~v~-gS~i~~  190 (224)
T 1vhc_A          145 VKMIKALLGPYAQLQIMPTGGIGLHNIRDYLAIPNIVACG-GSWFVE  190 (224)
T ss_dssp             HHHHHHHHTTTTTCEEEEBSSCCTTTHHHHHTSTTBCCEE-ECGGGC
T ss_pred             HHHHHHHHhhCCCCeEEEECCcCHHHHHHHHhcCCCEEEE-EchhcC
Confidence            45667788888 5899999999999999999985589999 776654

>2yyu_A Orotidine 5'-phosphate decarboxylase; TIM barrel, structural genomics, NPPSFA, national project on structural and functional analyses; HET: C5P; 2.20A {Geobacillus kaustophilus} PDB: 2yyt_A*

Probab=95.69  E-value=0.013  Score=42.60  Aligned_cols=50  Identities=24%  Similarity=0.303  Sum_probs=39.8

Q ss_pred             HHHHHHHcC-CeEEEeCCCCHH-----------HHHHHHHcCCCcEEecchHHhhCCcHHHHH
Q 046574           14 LLLMRKAFK-GTFLVAGGYDRE-----------DGNKAIAEGRADLVVYGRFFLANPDLPRRF   64 (104)
Q Consensus        14 ~~~ir~~~~-~pvi~~Ggi~~~-----------~ae~~l~~g~~DlVa~gR~~lanPdl~~ri   64 (104)
                      .+.+|+..+ .++++.|||.++           .+.++++.| +|++.+||+....+|..+.+
T Consensus       167 i~~lr~~~~~~~i~V~gGI~~~g~~~~dq~rv~t~~~a~~aG-ad~iVvGr~I~~a~dp~~a~  228 (246)
T 2yyu_A          167 AAFIKERCGASFLAVTPGIRFADDAAHDQVRVVTPRKARALG-SDYIVIGRSLTRAADPLRTY  228 (246)
T ss_dssp             HHHHHHHHCTTSEEEECCCCCCC-------CCCCHHHHHHHT-CSEEEECHHHHTSSSHHHHH
T ss_pred             HHHHHHhcCCCCEEEeCCcCCCCCCcccccccCCHHHHHHcC-CCEEEECHhhcCCCCHHHHH
Confidence            567887775 468999999666           688889888 79999999999887754433

>1dbt_A Orotidine 5'-phosphate decarboxylase; UMP, TIM barrel, lyase; HET: U5P; 2.40A {Bacillus subtilis} SCOP: c.1.2.3

Probab=95.58  E-value=0.01  Score=42.91  Aligned_cols=51  Identities=20%  Similarity=0.234  Sum_probs=39.8

Q ss_pred             hHHHHHHHHcC-CeEEEeCCCCHHHH-----------HHHHHcCCCcEEecchHHhhCCcHHHH
Q 046574           12 HSLLLMRKAFK-GTFLVAGGYDREDG-----------NKAIAEGRADLVVYGRFFLANPDLPRR   63 (104)
Q Consensus        12 ~~~~~ir~~~~-~pvi~~Ggi~~~~a-----------e~~l~~g~~DlVa~gR~~lanPdl~~r   63 (104)
                      +..+.+|+..+ .++++.|||+++.+           .++++.| +|++.+||+....||....
T Consensus       164 ~~i~~lr~~~~~~~i~v~gGI~~~~~~~~dq~rv~tp~~a~~aG-ad~iVvGr~I~~a~dp~~a  226 (239)
T 1dbt_A          164 HEAKAIYQAVSPSFLTVTPGIRMSEDAANDQVRVATPAIAREKG-SSAIVVGRSITKAEDPVKA  226 (239)
T ss_dssp             GGHHHHTTTSCTTCEEEECCBCCTTSCCTTCSSCBCHHHHHHTT-CSEEEECHHHHTSSCHHHH
T ss_pred             HHHHHHHHhcCCCcEEEeCCcCCCCCCccceeccCCHHHHHHcC-CCEEEEChhhcCCCCHHHH
Confidence            34556777765 47899999977666           7888888 7999999999988885443

>3cu2_A Ribulose-5-phosphate 3-epimerase; YP_718263.1, ribulose-PHOS epimerase family, structural genomics, joint center for STR genomics, JCSG; 1.91A {Haemophilus somnus}

Probab=95.55  E-value=0.032  Score=40.68  Aligned_cols=49  Identities=14%  Similarity=0.203  Sum_probs=39.2

Q ss_pred             HHHHHHHHc-----CCeEEEeCCCCHHHHHHHHH--cCCCcEEecchHHhhCCcHHHH
Q 046574           13 SLLLMRKAF-----KGTFLVAGGYDREDGNKAIA--EGRADLVVYGRFFLANPDLPRR   63 (104)
Q Consensus        13 ~~~~ir~~~-----~~pvi~~Ggi~~~~ae~~l~--~g~~DlVa~gR~~lanPdl~~r   63 (104)
                      ..+.+|+..     +.++.+.|||+++.+.++++  .| +|.+.+|+.+... |....
T Consensus       173 ki~~lr~~~~~~~~~~~I~vdGGI~~~~~~~~~~~~aG-ad~~VvGSaIf~~-d~~~~  228 (237)
T 3cu2_A          173 RVIQVEKRLGNRRVEKLINIDGSMTLELAKYFKQGTHQ-IDWLVSGSALFSG-ELKTN  228 (237)
T ss_dssp             HHHHHHHHHGGGGGGCEEEEESSCCHHHHHHHHHSSSC-CCCEEECGGGGSS-CHHHH
T ss_pred             HHHHHHHHHHhcCCCceEEEECCcCHHHHHHHHHhCCC-CcEEEEeeHHhCC-CHHHH
Confidence            334566665     46899999999999999999  88 8999999999975 64433

>3ctl_A D-allulose-6-phosphate 3-epimerase; D-glucitol 6-phosphate, (beta/alpha)8 barrel, carbohydrate metabolism, isomerase; HET: S6P; 2.20A {Escherichia coli} PDB: 3ct7_A*

Probab=95.52  E-value=0.018  Score=41.79  Aligned_cols=45  Identities=20%  Similarity=0.279  Sum_probs=37.6

Q ss_pred             HHHHHHHc-----CCeEEEeCCCCHHHHHHHHHcCCCcEEecc-hHHhhCCc
Q 046574           14 LLLMRKAF-----KGTFLVAGGYDREDGNKAIAEGRADLVVYG-RFFLANPD   59 (104)
Q Consensus        14 ~~~ir~~~-----~~pvi~~Ggi~~~~ae~~l~~g~~DlVa~g-R~~lanPd   59 (104)
                      .+.+|+..     +.++.+.|||+++.+.++++.| +|.+.+| +.+...+|
T Consensus       154 I~~lr~~~~~~~~~~~I~VdGGI~~~~~~~~~~aG-Ad~~V~G~saif~~~d  204 (231)
T 3ctl_A          154 LAELKAWREREGLEYEIEVDGSCNQATYEKLMAAG-ADVFIVGTSGLFNHAE  204 (231)
T ss_dssp             HHHHHHHHHHHTCCCEEEEESCCSTTTHHHHHHHT-CCEEEECTTTTGGGCS
T ss_pred             HHHHHHHHhccCCCceEEEECCcCHHHHHHHHHcC-CCEEEEccHHHhCCCC
Confidence            34566655     4688999999999999999999 8999999 99988766

>4a29_A Engineered retro-aldol enzyme RA95.0; de novo protein, engineered enzyme, retro-aldolase, directed evolution; HET: 3NK MLT; 1.10A {Synthetic construct} PDB: 4a2s_A* 4a2r_A* 3tc7_A 3tc6_A 3nl8_A* 3nxf_A* 3o6y_X 3ud6_A* 1igs_A 1juk_A 1jul_A* 3hoj_A 1a53_A* 1lbf_A* 1lbl_A* 3nyz_A 3nz1_A* 3uy7_A 3uxd_A* 3uxa_A* ...

Probab=95.49  E-value=0.041  Score=41.00  Aligned_cols=55  Identities=9%  Similarity=0.083  Sum_probs=44.6

Q ss_pred             HHHHHHHHcC--CeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHhhCC
Q 046574           13 SLLLMRKAFK--GTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEFNA   68 (104)
Q Consensus        13 ~~~~ir~~~~--~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~~g~   68 (104)
                      ....+.+.+.  ..+|+-+|| +++++..+.+.| +|.|.+|-.|+.+||-...+.+|.
T Consensus       193 ~t~~L~~~ip~~~~~VsESGI~t~~dv~~l~~~G-~~a~LVGealmr~~d~~~~Li~G~  250 (258)
T 4a29_A          193 NQRKLISMIPSNVVKVAKLGISERNEIEELRKLG-VNAFLISSSLMRNPEKIKELIEGS  250 (258)
T ss_dssp             HHHHHHTTSCTTSEEEEEESSCCHHHHHHHHHTT-CCEEEECHHHHHCTTHHHHHHC--
T ss_pred             HHHHHHhhCCCCCEEEEcCCCCCHHHHHHHHHCC-CCEEEECHHHhCCCcHHHHHHcCc
Confidence            3445666663  467888999 999999999888 899999999999999888888876

>3exr_A RMPD (hexulose-6-phosphate synthase); beta barrel, lyase; 1.70A {Streptococcus mutans} SCOP: c.1.2.3 PDB: 3exs_A* 3ext_A

Probab=95.47  E-value=0.012  Score=42.24  Aligned_cols=50  Identities=14%  Similarity=0.048  Sum_probs=40.0

Q ss_pred             hHHHHHHHHcC--CeEEEeCCCCHHHHHHHHHcCCCcEEecchHHhhCCcHHH
Q 046574           12 HSLLLMRKAFK--GTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANPDLPR   62 (104)
Q Consensus        12 ~~~~~ir~~~~--~pvi~~Ggi~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~   62 (104)
                      +.++.+|+..+  .++.+.|||+++.+..+++.| +|.+.+||+....+|-..
T Consensus       156 ~e~~~ir~~~~~~~~i~v~gGI~~~~~~~~~~aG-ad~~VvG~~I~~a~dp~~  207 (221)
T 3exr_A          156 KDLNKVKKLIEMGFRVSVTGGLSVDTLKLFEGVD-VFTFIAGRGITEAKNPAG  207 (221)
T ss_dssp             HHHHHHHHHHHHTCEEEEESSCCGGGGGGGTTCC-CSEEEECHHHHTSSSHHH
T ss_pred             HHHHHHHHhhcCCceEEEECCCCHHHHHHHHHCC-CCEEEECchhhCCCCHHH
Confidence            34667888763  468899999999888888888 799999999887666543

>1w8s_A FBP aldolase, fructose-bisphosphate aldolase class I; TIM barrel, glycolytic, archaeal, catalytic mechanism, reaction intermediate, lyase; HET: FBP; 1.85A {Thermoproteus tenax} SCOP: c.1.10.1 PDB: 1w8r_A* 2yce_A* 1ojx_A 1ok4_A 1ok6_A

Probab=95.39  E-value=0.035  Score=40.82  Aligned_cols=52  Identities=23%  Similarity=0.187  Sum_probs=39.5

Q ss_pred             hHHHHHHHHcCC-eEEEeCCC---CHHHHHHHH----HcCCCcEEecchHHhhCCcHHHHH
Q 046574           12 HSLLLMRKAFKG-TFLVAGGY---DREDGNKAI----AEGRADLVVYGRFFLANPDLPRRF   64 (104)
Q Consensus        12 ~~~~~ir~~~~~-pvi~~Ggi---~~~~ae~~l----~~g~~DlVa~gR~~lanPdl~~ri   64 (104)
                      +..+.+++..+. ||++.||+   +.+++.+.+    +.| ++.+++||..+..||-...+
T Consensus       185 e~~~~~~~~~~~~pV~asGGi~~~~~~~~l~~i~~~~~aG-A~GvsvgraI~~~~dp~~~~  244 (263)
T 1w8s_A          185 KTFSWAVKVAGKVPVLMSGGPKTKTEEDFLKQVEGVLEAG-ALGIAVGRNVWQRRDALKFA  244 (263)
T ss_dssp             HHHHHHHHHTTTSCEEEECCSCCSSHHHHHHHHHHHHHTT-CCEEEESHHHHTSTTHHHHH
T ss_pred             HHHHHHHHhCCCCeEEEEeCCCCCCHHHHHHHHHHHHHcC-CeEEEEehhhcCCcCHHHHH
Confidence            456667777777 99999999   355554444    778 68999999999999854433

>3ve9_A Orotidine-5'-phosphate decarboxylase; TIM barrel fold, orotidine 5'-monopho decarboxylase, lyase; 1.45A {Metallosphaera sedula} PDB: 3ve7_A

Probab=95.39  E-value=0.018  Score=41.51  Aligned_cols=53  Identities=21%  Similarity=0.405  Sum_probs=41.1

Q ss_pred             chHHHHHHHHcCCeEEEeCCCCHH--HHHHHHHcCCCcEEecchHHhhCCcHHHHH
Q 046574           11 PHSLLLMRKAFKGTFLVAGGYDRE--DGNKAIAEGRADLVVYGRFFLANPDLPRRF   64 (104)
Q Consensus        11 ~~~~~~ir~~~~~pvi~~Ggi~~~--~ae~~l~~g~~DlVa~gR~~lanPdl~~ri   64 (104)
                      ++.+..+|+..+..+++++||.++  ..+++++.| +|++.+||+....+|-...+
T Consensus       139 ~~e~~~ir~~~~~f~~v~pGI~~~g~~~~~a~~~G-ad~iVvGr~I~~a~dp~~a~  193 (215)
T 3ve9_A          139 PSMISRVKGDFPDKLVISPGVGTQGAKPGIALCHG-ADYEIVGRSVYQSADPVRKL  193 (215)
T ss_dssp             HHHHHHHHHHCTTSEEEECCTTSTTCCTTHHHHTT-CSEEEECHHHHTSSSHHHHH
T ss_pred             HHHHHHHHHhCCCcEEEcCCCCcCcCCHHHHHHcC-CCEEEeCHHHcCCCCHHHHH
Confidence            345667898886667778999655  677888888 79999999999988775443

>3tha_A Tryptophan synthase alpha chain; structural genomics, center for structural genomics of infec diseases, csgid, lyase; 2.37A {Campylobacter jejuni}

Probab=95.28  E-value=0.024  Score=41.98  Aligned_cols=42  Identities=19%  Similarity=0.182  Sum_probs=35.9

Q ss_pred             hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHh
Q 046574           12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFL   55 (104)
Q Consensus        12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~l   55 (104)
                      +..+++|+..+.||++.+|| ++++++++. ++ +|.|.+|..++
T Consensus       189 ~~v~~vr~~~~~Pv~vGfGIst~e~a~~~~-~~-ADGVIVGSAiV  231 (252)
T 3tha_A          189 DKVKEIRSFTNLPIFVGFGIQNNQDVKRMR-KV-ADGVIVGTSIV  231 (252)
T ss_dssp             HHHHHHHTTCCSCEEEESSCCSHHHHHHHT-TT-SSEEEECHHHH
T ss_pred             HHHHHHHHhcCCcEEEEcCcCCHHHHHHHH-hc-CCEEEECHHHH
Confidence            35677888888899999999 999998875 45 99999999887

>3nl6_A Thiamine biosynthetic bifunctional enzyme; thiamin biosynthesis, eukaryoyes, transferase; HET: TPS ACP; 2.61A {Candida glabrata} PDB: 3nl2_A* 3nl5_A* 3nl3_A* 3nm3_A* 3nm1_A*

Probab=94.92  E-value=0.037  Score=44.84  Aligned_cols=51  Identities=12%  Similarity=0.104  Sum_probs=40.7

Q ss_pred             hHHHHHHHHc------CCeEEEeCCCCHHHHHHHHH--------cCCCcEEecchHHhhCCcHHHH
Q 046574           12 HSLLLMRKAF------KGTFLVAGGYDREDGNKAIA--------EGRADLVVYGRFFLANPDLPRR   63 (104)
Q Consensus        12 ~~~~~ir~~~------~~pvi~~Ggi~~~~ae~~l~--------~g~~DlVa~gR~~lanPdl~~r   63 (104)
                      +.++.+++.+      +.|+++-|||+++.+.+++.        .| +|.|++++.++..+|-...
T Consensus       157 ~~l~~i~~~~~~~~~~~iPvvAIGGI~~~ni~~v~~~~~~~g~~~G-adgvAVvsaI~~a~dp~~a  221 (540)
T 3nl6_A          157 AGAIRVLDALERNNAHWCRTVGIGGLHPDNIERVLYQCVSSNGKRS-LDGICVVSDIIASLDAAKS  221 (540)
T ss_dssp             HHHHHHHHHHHHTTCTTCEEEEESSCCTTTHHHHHHHCBCTTSSCB-CSCEEESHHHHTCTTHHHH
T ss_pred             HHHHHHHHHHHhhccCCCCEEEEcCCCHHHHHHHHHhhcccccccC-ceEEEEeHHHhcCCCHHHH
Confidence            3445566653      68999999999999999997        45 8999999999998875433

>1mxs_A KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate aldolase, sulfate, beta-BA lyase; 2.20A {Pseudomonas putida} SCOP: c.1.10.1

Probab=94.88  E-value=0.016  Score=41.93  Aligned_cols=44  Identities=16%  Similarity=0.169  Sum_probs=35.3

Q ss_pred             hHHHHHHHHc-CCeEEEeCCCCHHHHHHHHHcCCCcEEecchHHhh
Q 046574           12 HSLLLMRKAF-KGTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLA   56 (104)
Q Consensus        12 ~~~~~ir~~~-~~pvi~~Ggi~~~~ae~~l~~g~~DlVa~gR~~la   56 (104)
                      ..++.++..+ +.|++..|||+++.+.+.++.+.+|.|+ |..+..
T Consensus       155 ~~lk~i~~~~~~ipvvaiGGI~~~N~~~~l~~~Ga~~v~-gSai~~  199 (225)
T 1mxs_A          155 AAIKAFGGPFGDIRFCPTGGVNPANVRNYMALPNVMCVG-TTWMLD  199 (225)
T ss_dssp             HHHHHHHTTTTTCEEEEBSSCCTTTHHHHHHSTTBCCEE-ECTTSC
T ss_pred             HHHHHHHhhCCCCeEEEECCCCHHHHHHHHhccCCEEEE-EchhcC
Confidence            4556677777 6799999999999999999943389999 776654

>1vkf_A Glycerol uptake operon antiterminator-related Pro; struc genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: CIT; 1.65A {Thermotoga maritima} SCOP: c.1.29.1

Probab=94.75  E-value=0.034  Score=39.61  Aligned_cols=39  Identities=21%  Similarity=0.191  Sum_probs=31.6

Q ss_pred             HHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHh
Q 046574           15 LLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFL   55 (104)
Q Consensus        15 ~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~l   55 (104)
                      +.+++..+.|+|+.|+| ++|++++ +++| +|.|+-+..-|
T Consensus       142 ~~I~~v~~~PiIaGGlI~t~edv~~-l~aG-A~aIsTs~~~L  181 (188)
T 1vkf_A          142 KVARKIPGRTVIAAGLVETEEEARE-ILKH-VSAISTSSRIL  181 (188)
T ss_dssp             HHHTTSTTSEEEEESCCCSHHHHHH-HTTT-SSEEEECCHHH
T ss_pred             HHHHHhcCCCEEEECCcCCHHHHHH-HHCC-CeEEEeCCHHH
Confidence            44544456799999999 9999999 9999 79999886654

>2uva_G Fatty acid synthase beta subunits; fungal, dehydratase, enoyl reductase, ketoacyl synthase, ketoacyl reductase; HET: FMN; 3.10A {Thermomyces lanuginosus} PDB: 2uvc_G*

Probab=94.50  E-value=0.029  Score=51.79  Aligned_cols=55  Identities=13%  Similarity=0.149  Sum_probs=45.2

Q ss_pred             HHHHHHHHcCCeEEEeCCC-CHHHHHHHH-----------HcCCCcEEecchHHhhCC------cHHHHHhhCC
Q 046574           13 SLLLMRKAFKGTFLVAGGY-DREDGNKAI-----------AEGRADLVVYGRFFLANP------DLPRRFEFNA   68 (104)
Q Consensus        13 ~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l-----------~~g~~DlVa~gR~~lanP------dl~~ri~~g~   68 (104)
                      ....|++.+++|||+.||| +++.+..+|           .-| +|.|.+|..|++-.      .+-+.+....
T Consensus       746 lv~~i~~~~~ipviaaGGI~~g~~i~aaltg~ws~~~g~palG-AdgV~~GT~f~~t~Ea~~s~~~K~~lv~a~  818 (2060)
T 2uva_G          746 MYSRIRKCSNIVLVAGSGFGGSEDTYPYLTGSWSTKFGYPPMP-FDGCMFGSRMMTAKEAHTSKQAKQAIVDAP  818 (2060)
T ss_dssp             HHHHHHTSTTEEEEEESSCCSHHHHHHHHHTCGGGTTTSCCCC-CSCEEESGGGGGBTTSCCCHHHHHHHHTSC
T ss_pred             HHHHHHHHcCCCEEEeCCCCCHHHHHHHhcCcchhhcCCCCCC-CCEEEEchhhhcCcCCCCCHHHHHHHHhCC
Confidence            5567888888999999999 999999999           778 79999999999864      4555555543

>2pgw_A Muconate cycloisomerase; enolase superfamily, octamer, small metabolism, PSI-II, NYSGXRC, structural genomics, PR structure initiative; 1.95A {Sinorhizobium meliloti}

Probab=94.42  E-value=0.096  Score=39.91  Aligned_cols=48  Identities=10%  Similarity=0.059  Sum_probs=41.5

Q ss_pred             hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCc
Q 046574           12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPD   59 (104)
Q Consensus        12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPd   59 (104)
                      .....+++.+++||++.+.+ +++++++++++|.+|+|.+-...+-.+.
T Consensus       231 ~~~~~l~~~~~iPI~~de~i~~~~~~~~~i~~~~~d~v~ik~~~~GGit  279 (384)
T 2pgw_A          231 PAMAHVREKVGIPIVADQAAFTLYDVYEICRQRAADMICIGPREIGGIQ  279 (384)
T ss_dssp             HHHHHHHHHCSSCEEESTTCCSHHHHHHHHHTTCCSEEEECHHHHTSHH
T ss_pred             HHHHHHHhhCCCCEEEeCCcCCHHHHHHHHHcCCCCEEEEcchhhCCHH
Confidence            45677899999999999999 9999999999999999999777665553

>4dbe_A Orotidine 5'-phosphate decarboxylase; TIM barrel, orotidine 5'-monophosphate decarboxylase, inhibi lyase-lyase inhibitor complex; HET: BMP; 1.79A {Sulfolobus solfataricus}

Probab=94.28  E-value=0.046  Score=39.40  Aligned_cols=50  Identities=20%  Similarity=0.317  Sum_probs=39.1

Q ss_pred             hHHHHHHHHcCCeEEEeCCCCHH--HHHHHHHcCCCcEEecchHHhhCCcHHH
Q 046574           12 HSLLLMRKAFKGTFLVAGGYDRE--DGNKAIAEGRADLVVYGRFFLANPDLPR   62 (104)
Q Consensus        12 ~~~~~ir~~~~~pvi~~Ggi~~~--~ae~~l~~g~~DlVa~gR~~lanPdl~~   62 (104)
                      +.+..+|+..+..+++++||.++  ..+++++.| +|.+.+||+...-+|-..
T Consensus       147 ~e~~~ir~~~~~~~~vtPGI~~~g~tp~~a~~~G-ad~iVVGR~I~~A~dP~~  198 (222)
T 4dbe_A          147 DHITQYRRDFEKMTIVSPGMGSQGGSYGDAVCAG-ADYEIIGRSIYNAGNPLT  198 (222)
T ss_dssp             HHHHHHHHHCTTCEEEECCBSTTSBCTTHHHHHT-CSEEEECHHHHTSSSHHH
T ss_pred             HHHHHHHHhCCCCEEEcCCcccCccCHHHHHHcC-CCEEEECHHhcCCCCHHH
Confidence            45677898886667789999544  566778888 799999999999877543

>1x1o_A Nicotinate-nucleotide pyrophosphorylase; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 1.90A {Thermus thermophilus}

Probab=94.20  E-value=0.1  Score=39.14  Aligned_cols=41  Identities=17%  Similarity=0.185  Sum_probs=33.2

Q ss_pred             HHHHHHc--CCeEEEeCCCCHHHHHHHHHcCCCcEEecchHHhh
Q 046574           15 LLMRKAF--KGTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLA   56 (104)
Q Consensus        15 ~~ir~~~--~~pvi~~Ggi~~~~ae~~l~~g~~DlVa~gR~~la   56 (104)
                      +.+.+.+  ..|++++|||+++.+.++.+.| +|+|++|...-+
T Consensus       231 k~av~~v~~~ipi~AsGGIt~eni~~~a~tG-vD~IsVgs~~~~  273 (286)
T 1x1o_A          231 REAVRRVGGRVPLEASGNMTLERAKAAAEAG-VDYVSVGALTHS  273 (286)
T ss_dssp             HHHHHHHTTSSCEEEESSCCHHHHHHHHHHT-CSEEECTHHHHS
T ss_pred             HHHHHHhCCCCeEEEEcCCCHHHHHHHHHcC-CCEEEEcHHHcC
Confidence            3444444  4699999999999999999999 899999985544

>1vqt_A Orotidine 5'-phosphate decarboxylase; TM0332, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.00A {Thermotoga maritima} SCOP: c.1.2.3

Probab=94.07  E-value=0.08  Score=37.77  Aligned_cols=50  Identities=18%  Similarity=0.224  Sum_probs=36.0

Q ss_pred             hHHHHHHHHcCCeEEEeCCCCHHH----------HHHHHHcCCCcEEecchHHhhCCcHHHHH
Q 046574           12 HSLLLMRKAFKGTFLVAGGYDRED----------GNKAIAEGRADLVVYGRFFLANPDLPRRF   64 (104)
Q Consensus        12 ~~~~~ir~~~~~pvi~~Ggi~~~~----------ae~~l~~g~~DlVa~gR~~lanPdl~~ri   64 (104)
                      ..++.+|+..+.+ ++++||.++.          .++ ++.| +|.|.+||+....+|-...+
T Consensus       146 ~~~~~ir~~~~~~-~v~pGI~~~~~~~dq~rv~t~~~-i~aG-ad~iVvGR~I~~a~dP~~aa  205 (213)
T 1vqt_A          146 PWAKALREKIKGK-ILVPGIRMEVKADDQKDVVTLEE-MKGI-ANFAVLGREIYLSENPREKI  205 (213)
T ss_dssp             HHHHHHTTTCCSC-EEECCBC---------CCBCHHH-HTTT-CSEEEESHHHHTSSCHHHHH
T ss_pred             HHHHHHHHHCCCC-EEECCCCCCCCccchhhcCCHHH-HHCC-CCEEEEChhhcCCCCHHHHH
Confidence            3456677777667 8889996554          467 8888 79999999999888754433

>4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase; 1.64A {Vibrionales bacterium swat-3}

Probab=94.04  E-value=0.029  Score=41.02  Aligned_cols=48  Identities=13%  Similarity=0.176  Sum_probs=35.2

Q ss_pred             chHHHHHHHHc-CCeEEEeCCCCHHHHHHHHHcCCCcEEecchHHhhCCcH
Q 046574           11 PHSLLLMRKAF-KGTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANPDL   60 (104)
Q Consensus        11 ~~~~~~ir~~~-~~pvi~~Ggi~~~~ae~~l~~g~~DlVa~gR~~lanPdl   60 (104)
                      ...++.++..+ +.|+|.+|||+++.+.+.++.| ++.++.|. +|.+|++
T Consensus       162 ~~~lkal~~p~p~ip~~ptGGI~~~n~~~~l~aG-a~~~vgGs-~l~~~~~  210 (232)
T 4e38_A          162 ISMVKSLVGPYGDIRLMPTGGITPSNIDNYLAIP-QVLACGGT-WMVDKKL  210 (232)
T ss_dssp             HHHHHHHHTTCTTCEEEEBSSCCTTTHHHHHTST-TBCCEEEC-GGGCHHH
T ss_pred             HHHHHHHHHHhcCCCeeeEcCCCHHHHHHHHHCC-CeEEEECc-hhcChHH
Confidence            35667777776 4699999999999999999988 45555554 4444443

>2b7n_A Probable nicotinate-nucleotide pyrophosphorylase; quinolinate phosphoribosyltransferase, quinolinic acid, HELI pylori, transferase; HET: NTM; 2.30A {Helicobacter pylori} PDB: 2b7p_A* 2b7q_A*

Probab=94.04  E-value=0.05  Score=40.35  Aligned_cols=35  Identities=17%  Similarity=0.174  Sum_probs=30.8

Q ss_pred             CeEEEeCCCCHHHHHHHHHcCCCcEEecchHHhhCC
Q 046574           23 GTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANP   58 (104)
Q Consensus        23 ~pvi~~Ggi~~~~ae~~l~~g~~DlVa~gR~~lanP   58 (104)
                      .+++++|||+++.+.+.++.| +|.|++|......|
T Consensus       230 ~~i~AsGGI~~~ni~~~~~aG-aD~i~vGs~i~~a~  264 (273)
T 2b7n_A          230 VLLEASGNISLESINAYAKSG-VDAISVGALIHQAT  264 (273)
T ss_dssp             CEEEEESSCCTTTHHHHHTTT-CSEEECTHHHHTCC
T ss_pred             cEEEEECCCCHHHHHHHHHcC-CcEEEEcHHhcCCC
Confidence            699999999999999999999 79999998865444

>1ea0_A Glutamate synthase [NADPH] large chain; oxidoreductase, iron sulphur flavoprotein; HET: OMT FMN AKG; 3.0A {Azospirillum brasilense} SCOP: b.80.4.1 c.1.4.1 d.153.1.1 PDB: 2vdc_A*

Probab=93.82  E-value=0.1  Score=46.94  Aligned_cols=34  Identities=24%  Similarity=0.147  Sum_probs=31.7

Q ss_pred             CCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhh
Q 046574           22 KGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLA   56 (104)
Q Consensus        22 ~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~la   56 (104)
                      ++|||+.||| +..++.+++.-| +|.|.+||++|.
T Consensus      1064 ~VpVIAdGGIrtG~DVakALaLG-AdaV~iGTafL~ 1098 (1479)
T 1ea0_A         1064 RVRLRTDGGLKTGRDIVIAAMLG-AEEFGIGTASLI 1098 (1479)
T ss_dssp             TSEEEEESSCCSHHHHHHHHHTT-CSEEECCHHHHH
T ss_pred             CceEEEECCCCCHHHHHHHHHcC-CCeeeEcHHHHH
Confidence            5799999999 999999999999 799999999986

>1i4n_A Indole-3-glycerol phosphate synthase; thermostable TIM-barrel protein, salt bridges, electrostatic interactions, lyase; 2.50A {Thermotoga maritima} SCOP: c.1.2.4 PDB: 1j5t_A

Probab=93.66  E-value=0.094  Score=38.64  Aligned_cols=51  Identities=14%  Similarity=0.169  Sum_probs=41.1

Q ss_pred             HHHHHHHHc--CCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHh
Q 046574           13 SLLLMRKAF--KGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLPRRFE   65 (104)
Q Consensus        13 ~~~~ir~~~--~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~   65 (104)
                      ....+.+.+  +.++|+-||| |++++..+.+.  +|.|.+|..++..+|....++
T Consensus       191 ~~~~l~~~ip~~~~vIaEsGI~t~edv~~~~~~--a~avLVG~aimr~~d~~~~~~  244 (251)
T 1i4n_A          191 VLWELLPLVPDDTVVVAESGIKDPRELKDLRGK--VNAVLVGTSIMKAENPRRFLE  244 (251)
T ss_dssp             HHHHHGGGSCTTSEEEEESCCCCGGGHHHHTTT--CSEEEECHHHHHCSSHHHHHH
T ss_pred             HHHHHHHhCCCCCEEEEeCCCCCHHHHHHHHHh--CCEEEEcHHHcCCcCHHHHHH
Confidence            334555666  3589999999 89999999765  899999999999998776654

>1ofd_A Ferredoxin-dependent glutamate synthase 2; oxidoreductase, complex enzyme, substrate channeling, amidotransferase, flavoprotein, iron-sulphur; HET: FMN AKG; 2.00A {Synechocystis SP} SCOP: b.80.4.1 c.1.4.1 d.153.1.1 PDB: 1llz_A* 1lm1_A* 1llw_A* 1ofe_A*

Probab=93.58  E-value=0.11  Score=46.79  Aligned_cols=34  Identities=21%  Similarity=0.183  Sum_probs=31.8

Q ss_pred             CCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhh
Q 046574           22 KGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLA   56 (104)
Q Consensus        22 ~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~la   56 (104)
                      .+|||+.||| +..++.+++.-| +|.|.+||++|.
T Consensus      1099 ~IpVIAdGGIrtG~DVakALaLG-AdaV~iGTafL~ 1133 (1520)
T 1ofd_A         1099 RVLLRADGGLKTGWDVVMAALMG-AEEYGFGSIAMI 1133 (1520)
T ss_dssp             GCEEEEESSCCSHHHHHHHHHTT-CSEEECSHHHHH
T ss_pred             CceEEEECCCCCHHHHHHHHHcC-CCeeEEcHHHHH
Confidence            4799999999 999999999999 799999999987

>2rdx_A Mandelate racemase/muconate lactonizing enzyme, P; enolase, structural genomics, PSI, protein structu initiative, nysgrc; 2.00A {Roseovarius nubinhibens}

Probab=93.49  E-value=0.096  Score=39.86  Aligned_cols=40  Identities=8%  Similarity=0.092  Sum_probs=35.7

Q ss_pred             hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecc
Q 046574           12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYG   51 (104)
Q Consensus        12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~g   51 (104)
                      .....+++.+++||++.+.+ +++++++++++|.+|+|.+-
T Consensus       227 ~~~~~l~~~~~iPI~~de~i~~~~~~~~~i~~~~~d~v~ik  267 (379)
T 2rdx_A          227 EECQQVRRVADQPMKLDECVTGLHMAQRIVADRGAEICCLK  267 (379)
T ss_dssp             HHHHHHHTTCCSCEEECTTCCSHHHHHHHHHHTCCSEEEEE
T ss_pred             HHHHHHHhhCCCCEEEeCCcCCHHHHHHHHHcCCCCEEEEe
Confidence            45667888889999999999 99999999999999999883

>4gj1_A 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) methylideneamino] imidazole-4-carboxamide...; HISA, csgid, niaid,; 2.15A {Campylobacter jejuni subsp}

Probab=93.29  E-value=0.16  Score=36.70  Aligned_cols=43  Identities=19%  Similarity=0.224  Sum_probs=34.6

Q ss_pred             hHHHHHHHHc-CCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhh
Q 046574           12 HSLLLMRKAF-KGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLA   56 (104)
Q Consensus        12 ~~~~~ir~~~-~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~la   56 (104)
                      +..+.+++.+ ++|||++||+ +.++.+++ ..+ ++.|.+|+.|-.
T Consensus       185 ~l~~~l~~~~~~ipviasGGv~~~~Dl~~l-~~~-~~gvivg~Al~~  229 (243)
T 4gj1_A          185 RLYKLIHEIFPNICIQASGGVASLKDLENL-KGI-CSGVIVGKALLD  229 (243)
T ss_dssp             HHHHHHHHHCTTSEEEEESCCCSHHHHHHT-TTT-CSEEEECHHHHT
T ss_pred             HHHHHHHHhcCCCCEEEEcCCCCHHHHHHH-Hcc-CchhehHHHHHC
Confidence            4567788887 4799999999 99999775 555 889999998754

>1mdl_A Mandelate racemase; isomerase, mandelate pathway, magnesium; HET: RMN SMN; 1.85A {Pseudomonas aeruginosa} SCOP: c.1.11.2 d.54.1.1 PDB: 1mdr_A* 3uxk_A* 3uxl_A* 1dtn_A* 1mra_A* 2mnr_A 1mns_A

Probab=93.21  E-value=0.13  Score=38.71  Aligned_cols=41  Identities=12%  Similarity=0.138  Sum_probs=36.3

Q ss_pred             hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecch
Q 046574           12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGR   52 (104)
Q Consensus        12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR   52 (104)
                      .....+++.+++||++.+.+ ++++++++++++.+|+|.+-.
T Consensus       230 ~~~~~l~~~~~iPI~~de~~~~~~~~~~~i~~~~~d~v~ik~  271 (359)
T 1mdl_A          230 EGHQRIQSKLNVPVQMGENWLGPEEMFKALSIGACRLAMPDA  271 (359)
T ss_dssp             HHHHHHHHTCSSCEEECTTCCSHHHHHHHHHTTCCSEECCBT
T ss_pred             HHHHHHHHhCCCCEEeCCCCCCHHHHHHHHHcCCCCEEeecc
Confidence            45667888889999999999 999999999999999998843

>3ru6_A Orotidine 5'-phosphate decarboxylase; structural genomics, center for structural genomics of infec diseases (csgid), TIM-barrel; 1.80A {Campylobacter jejuni subsp}

Probab=93.19  E-value=0.16  Score=38.49  Aligned_cols=48  Identities=15%  Similarity=0.081  Sum_probs=38.1

Q ss_pred             HHHHHHHcC-CeEEEeCCCCHH-----------HHHHHHHcCCCcEEecchHHhhCCcHHH
Q 046574           14 LLLMRKAFK-GTFLVAGGYDRE-----------DGNKAIAEGRADLVVYGRFFLANPDLPR   62 (104)
Q Consensus        14 ~~~ir~~~~-~pvi~~Ggi~~~-----------~ae~~l~~g~~DlVa~gR~~lanPdl~~   62 (104)
                      +..||+..+ ..+++++||.++           .+.++++.| +|++.+||+....+|-..
T Consensus       182 ~~~IR~~~~~~fl~VTPGIr~qG~~~~DQ~Rv~t~~~a~~aG-Ad~iVvGr~I~~a~dp~~  241 (303)
T 3ru6_A          182 SKKIKEHTSSNFLTLTPGIRPFGETNDDQKRVANLAMARENL-SDYIVVGRPIYKNENPRA  241 (303)
T ss_dssp             HHHHHHHSCTTSEEEECCCCTTC--------CCSHHHHHHTT-CSEEEECHHHHTSSCHHH
T ss_pred             HHHHHHhCCCccEEECCCcCcccCCcccccccCCHHHHHHcC-CCEEEEChHHhCCCCHHH
Confidence            567899886 478889999543           467888888 799999999998777543

>2qr6_A IMP dehydrogenase/GMP reductase; NP_599840.1, G reductase domain, structural genomics, joint center for STR genomics, JCSG; HET: MSE; 1.50A {Corynebacterium glutamicum atcc 13032}

Probab=93.02  E-value=0.1  Score=40.04  Aligned_cols=38  Identities=18%  Similarity=0.247  Sum_probs=32.0

Q ss_pred             HHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecch
Q 046574           13 SLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGR   52 (104)
Q Consensus        13 ~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR   52 (104)
                      ....+++.+++|||+ ||+ ++++|+.+++.| +|.|.+|+
T Consensus       202 ~i~~l~~~~~~pvi~-ggi~t~e~a~~~~~~G-ad~i~vg~  240 (393)
T 2qr6_A          202 NLKEFIGSLDVPVIA-GGVNDYTTALHMMRTG-AVGIIVGG  240 (393)
T ss_dssp             CHHHHHHHCSSCEEE-ECCCSHHHHHHHHTTT-CSEEEESC
T ss_pred             HHHHHHHhcCCCEEE-CCcCCHHHHHHHHHcC-CCEEEECC
Confidence            356788889999999 566 999999999888 89988876

>2og9_A Mandelate racemase/muconate lactonizing enzyme; NYSGXRC, protein structure initiative (PSI) II, PSI-2, 9382A mandelate racemase; 1.90A {Polaromonas SP} PDB: 3cb3_A*

Probab=93.00  E-value=0.16  Score=38.96  Aligned_cols=39  Identities=10%  Similarity=0.083  Sum_probs=35.4

Q ss_pred             hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEec
Q 046574           12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVY   50 (104)
Q Consensus        12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~   50 (104)
                      .....+++.+++||++.+.+ +++++++++++|.+|+|.+
T Consensus       248 ~~~~~l~~~~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~i  287 (393)
T 2og9_A          248 EGHAALALQFDTPIATGEMLTSAAEHGDLIRHRAADYLMP  287 (393)
T ss_dssp             HHHHHHHHHCSSCEEECTTCCSHHHHHHHHHTTCCSEECC
T ss_pred             HHHHHHHHhCCCCEEeCCCcCCHHHHHHHHHCCCCCEEee
Confidence            45677899999999999999 9999999999999999987

>3glc_A Aldolase LSRF; TIM barrel, lyase, schiff base; HET: R5P; 2.50A {Escherichia coli} PDB: 3gnd_A* 3gkf_O

Probab=92.90  E-value=0.23  Score=37.33  Aligned_cols=48  Identities=23%  Similarity=0.208  Sum_probs=37.1

Q ss_pred             HHHHHHHHcCCeEEEeCCC--CH----HHHHHHHHcCCCcEEecchHHhhCCcHH
Q 046574           13 SLLLMRKAFKGTFLVAGGY--DR----EDGNKAIAEGRADLVVYGRFFLANPDLP   61 (104)
Q Consensus        13 ~~~~ir~~~~~pvi~~Ggi--~~----~~ae~~l~~g~~DlVa~gR~~lanPdl~   61 (104)
                      ..+.+.+....||++.||+  +.    +.+.++++.| ++.|++||..+..||-.
T Consensus       214 ~~~~vv~~~~vPVv~~GG~~~~~~~~l~~v~~ai~aG-A~Gv~vGRnI~q~~dp~  267 (295)
T 3glc_A          214 GFERIVAGCPVPIVIAGGKKLPEREALEMCWQAIDQG-ASGVDMGRNIFQSDHPV  267 (295)
T ss_dssp             THHHHHHTCSSCEEEECCSCCCHHHHHHHHHHHHHTT-CSEEEESHHHHTSSSHH
T ss_pred             HHHHHHHhCCCcEEEEECCCCCHHHHHHHHHHHHHhC-CeEEEeHHHHhcCcCHH
Confidence            3456666667899999999  33    3567778888 79999999999877643

>2ovl_A Putative racemase; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.13A {Streptomyces coelicolor A3} PDB: 3ck5_A

Probab=92.57  E-value=0.17  Score=38.37  Aligned_cols=43  Identities=12%  Similarity=-0.113  Sum_probs=37.1

Q ss_pred             hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHH
Q 046574           12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFF   54 (104)
Q Consensus        12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~   54 (104)
                      .....+++.+++||++.+.+ ++++++++++++.+|+|.+-...
T Consensus       232 ~~~~~l~~~~~iPI~~dE~~~~~~~~~~~i~~~~~d~v~ik~~~  275 (371)
T 2ovl_A          232 VGNARIVRESGHTIAGGENLHTLYDFHNAVRAGSLTLPEPDVSN  275 (371)
T ss_dssp             HHHHHHHHHHCSCEEECTTCCSHHHHHHHHHHTCCSEECCCTTT
T ss_pred             HHHHHHHhhCCCCEEeCCCCCCHHHHHHHHHcCCCCEEeeCccc
Confidence            45667888899999999999 99999999999999999884433

>2jbm_A Nicotinate-nucleotide pyrophosphorylase; NAD, enzyme, metabolism, transferase, polymorphism, glycosyltransferase, pyridine nucleotide biosynthesis; HET: SRT; 2.0A {Homo sapiens} PDB: 3lar_A

Probab=92.41  E-value=0.072  Score=40.09  Aligned_cols=32  Identities=13%  Similarity=0.139  Sum_probs=28.7

Q ss_pred             CeEEEeCCCCHHHHHHHHHcCCCcEEecchHHh
Q 046574           23 GTFLVAGGYDREDGNKAIAEGRADLVVYGRFFL   55 (104)
Q Consensus        23 ~pvi~~Ggi~~~~ae~~l~~g~~DlVa~gR~~l   55 (104)
                      .++.++|||+++.+.++++.| +|.|++|....
T Consensus       245 ~~I~ASGGIt~~ni~~~~~aG-aD~i~vGs~i~  276 (299)
T 2jbm_A          245 VAVEASGGITLDNLPQFCGPH-IDVISMGMLTQ  276 (299)
T ss_dssp             SEEEEESSCCTTTHHHHCCTT-CCEEECTHHHH
T ss_pred             eeEEEECCCCHHHHHHHHHCC-CCEEEEChhhc
Confidence            689999999999999999888 79999998543

>1pii_A N-(5'phosphoribosyl)anthranilate isomerase; bifunctional(isomerase and synthase); 2.00A {Escherichia coli} SCOP: c.1.2.4 c.1.2.4 PDB: 1jcm_P* 2kzh_A

Probab=92.33  E-value=0.35  Score=38.47  Aligned_cols=52  Identities=13%  Similarity=0.075  Sum_probs=42.2

Q ss_pred             HHHHHHHHc--CCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHhh
Q 046574           13 SLLLMRKAF--KGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEF   66 (104)
Q Consensus        13 ~~~~ir~~~--~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~~   66 (104)
                      ....+.+.+  +.++|+-||| |++++..+.+.  +|.|.+|-.++..+|....+++
T Consensus       197 ~~~~L~~~ip~~~~vIaEsGI~t~edv~~~~~~--a~avLVGealmr~~d~~~~~~~  251 (452)
T 1pii_A          197 RTRELAPKLGHNVTVISESGINTYAQVRELSHF--ANGFLIGSALMAHDDLHAAVRR  251 (452)
T ss_dssp             HHHHHHHHHCTTSEEEEESCCCCHHHHHHHTTT--CSEEEECHHHHTCSCHHHHHHH
T ss_pred             HHHHHHHhCCCCCeEEEECCCCCHHHHHHHHHh--CCEEEEcHHHcCCcCHHHHHHH
Confidence            344566666  4589999999 99999999765  8999999999999998766654

>2nql_A AGR_PAT_674P, isomerase/lactonizing enzyme; enolase, structural genomics, protein structure initiative, nysgxrc; 1.80A {Agrobacterium tumefaciens str} PDB: 4dn1_A

Probab=92.24  E-value=0.15  Score=38.92  Aligned_cols=43  Identities=16%  Similarity=0.010  Sum_probs=37.2

Q ss_pred             hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHH
Q 046574           12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFF   54 (104)
Q Consensus        12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~   54 (104)
                      .....+++.+++||++.+.+ +++++++++++|.+|+|.+-...
T Consensus       249 ~~~~~l~~~~~iPI~~dE~~~~~~~~~~~i~~~~~d~v~ik~~~  292 (388)
T 2nql_A          249 AGLEKVSKNTDVPIAVGEEWRTHWDMRARIERCRIAIVQPEMGH  292 (388)
T ss_dssp             HHHHHHHTSCCSCEEECTTCCSHHHHHHHHTTSCCSEECCCHHH
T ss_pred             HHHHHHHhhCCCCEEEeCCcCCHHHHHHHHHcCCCCEEEecCCC
Confidence            45667888888999999999 99999999999999999985444

>2qgy_A Enolase from the environmental genome shotgun sequencing of the sargasso SEA; structural genomics, unknown function, PSI-2; 1.80A {Environmental sample}

Probab=92.23  E-value=0.23  Score=38.02  Aligned_cols=39  Identities=13%  Similarity=0.078  Sum_probs=35.4

Q ss_pred             hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEec
Q 046574           12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVY   50 (104)
Q Consensus        12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~   50 (104)
                      .....+++.+++||++.+.+ +++.++++++++.+|+|.+
T Consensus       235 ~~~~~l~~~~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~i  274 (391)
T 2qgy_A          235 SLLTEIKNTFNMKVVTGEKQSGLVHFRELISRNAADIFNP  274 (391)
T ss_dssp             HHHHHHHHHCSSCEEECTTCCSHHHHHHHHHTTCCSEECC
T ss_pred             HHHHHHHhhCCCCEEEcCCcCCHHHHHHHHHcCCCCEEEE
Confidence            45677899999999999999 9999999999999999988

>1to3_A Putative aldolase YIHT; beta-alpha barrel, structural genomics, PSI, protein structure initiative; 2.70A {Salmonella typhimurium} SCOP: c.1.10.1

Probab=92.22  E-value=0.33  Score=36.36  Aligned_cols=43  Identities=21%  Similarity=0.306  Sum_probs=34.8

Q ss_pred             cCCe-EEEeCCCCH----HHHHHHHHcCCCcEEecchHHhhC----CcHHHHH
Q 046574           21 FKGT-FLVAGGYDR----EDGNKAIAEGRADLVVYGRFFLAN----PDLPRRF   64 (104)
Q Consensus        21 ~~~p-vi~~Ggi~~----~~ae~~l~~g~~DlVa~gR~~lan----Pdl~~ri   64 (104)
                      ...| |++.||++.    +.+..+++.| ++.|++||.....    +|-...+
T Consensus       220 ~~~P~Vv~aGG~~~~~~~~~~~~a~~aG-a~Gv~vGRaI~q~~~~~~dp~~~~  271 (304)
T 1to3_A          220 INMPWVILSSGVDEKLFPRAVRVAMEAG-ASGFLAGRAVWSSVIGLPDTELML  271 (304)
T ss_dssp             CCSCEEECCTTSCTTTHHHHHHHHHHTT-CCEEEESHHHHGGGTTCSCHHHHH
T ss_pred             CCCCeEEEecCCCHHHHHHHHHHHHHcC-CeEEEEehHHhCccccCCCHHHHH
Confidence            5779 999999965    5688888887 7999999999988    7654433

>3m47_A Orotidine 5'-phosphate decarboxylase; orotidine 5'-monophosphate decarboxylase, mutant I218A, LYAS; 1.20A {Methanothermobacter thermautotrophicusdelta H} SCOP: c.1.2.3 PDB: 3li1_A 3m5z_A 3lty_A 3ltp_A* 3g18_A* 3g1d_A* 3g1f_A* 3g1h_A* 3g1a_A* 3lv6_A* 1klz_A* 3g1y_A 3g22_A* 3g24_A* 3p5z_A* 3siz_A* 3sy5_A* 1loq_A* 1lor_A* 1kly_A* ...

Probab=92.01  E-value=0.21  Score=35.92  Aligned_cols=52  Identities=21%  Similarity=0.300  Sum_probs=35.0

Q ss_pred             chHHHHHHHHcCC-eEEEeCCCCHH--HHHHHHHcCCCcEEecchHHhhCCcHHHHH
Q 046574           11 PHSLLLMRKAFKG-TFLVAGGYDRE--DGNKAIAEGRADLVVYGRFFLANPDLPRRF   64 (104)
Q Consensus        11 ~~~~~~ir~~~~~-pvi~~Ggi~~~--~ae~~l~~g~~DlVa~gR~~lanPdl~~ri   64 (104)
                      ++.+..+|+..+. .+|+++||.++  .. ++++.| +|.+.+||+....+|....+
T Consensus       161 ~~e~~~ir~~~~~~~~iv~PGI~~~g~~p-~~~~aG-ad~iVvGr~I~~a~dp~~a~  215 (228)
T 3m47_A          161 PERLSRLREIIGQDSFLISPGVGAQGGDP-GETLRF-ADAIIVGRSIYLADNPAAAA  215 (228)
T ss_dssp             HHHHHHHHHHHCSSSEEEECC----------CGGGT-CSEEEECHHHHTSSCHHHHH
T ss_pred             hHHHHHHHHhcCCCCEEEecCcCcCCCCH-hHHHcC-CCEEEECHHHhCCCCHHHHH
Confidence            3456778888864 56788998444  56 777888 69999999999888776544

>1qap_A Quinolinic acid phosphoribosyltransferase; glycosyltransferase, NAD biosynthesis; HET: NTM; 2.80A {Salmonella typhimurium} SCOP: c.1.17.1 d.41.2.1

Probab=91.99  E-value=0.23  Score=37.34  Aligned_cols=41  Identities=17%  Similarity=0.212  Sum_probs=33.2

Q ss_pred             HHHHHHHHcC--CeEEEeCCCCHHHHHHHHHcCCCcEEecchHH
Q 046574           13 SLLLMRKAFK--GTFLVAGGYDREDGNKAIAEGRADLVVYGRFF   54 (104)
Q Consensus        13 ~~~~ir~~~~--~pvi~~Ggi~~~~ae~~l~~g~~DlVa~gR~~   54 (104)
                      ..+.+++.++  .++.++|||+++.+.++.+.| +|.|++|...
T Consensus       241 ~l~~~v~~~~~~~~I~ASGGIt~~~i~~~a~~G-vD~isvGsli  283 (296)
T 1qap_A          241 QMREAVKRVNGQARLEVSGNVTAETLREFAETG-VDFISVGALT  283 (296)
T ss_dssp             HHHHHHHTTCTTCCEEECCCSCHHHHHHHHHTT-CSEEECSHHH
T ss_pred             HHHHHHHHhCCCCeEEEECCCCHHHHHHHHHcC-CCEEEEeHHH
Confidence            3344555563  589999999999999999999 7999999844

>2ps2_A Putative mandelate racemase/muconate lactonizing enzyme; structural genomics, NYSGXRC, target 9440A, enolase superfamily, PSI-2; 1.80A {Aspergillus oryzae RIB40}

Probab=91.99  E-value=0.2  Score=37.92  Aligned_cols=39  Identities=10%  Similarity=0.035  Sum_probs=35.0

Q ss_pred             hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEec
Q 046574           12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVY   50 (104)
Q Consensus        12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~   50 (104)
                      .....+++.+++||++.+.+ ++++++++++.+.+|+|.+
T Consensus       229 ~~~~~l~~~~~iPI~~dE~~~~~~~~~~~i~~~~~d~v~i  268 (371)
T 2ps2_A          229 RECISLRRKTDIPIIYDELATNEMSIVKILADDAAEGIDL  268 (371)
T ss_dssp             HHHHHHHTTCCSCEEESTTCCSHHHHHHHHHHTCCSEEEE
T ss_pred             HHHHHHHhhCCCCEEeCCCcCCHHHHHHHHHhCCCCEEEe
Confidence            45667888888999999999 9999999999999999987

>3tfx_A Orotidine 5'-phosphate decarboxylase; PSI-biology, nysgrc, 000529, structural genomics, NEW YORK S genomics research consortium; 2.19A {Lactobacillus acidophilus}

Probab=91.91  E-value=0.31  Score=35.99  Aligned_cols=51  Identities=16%  Similarity=0.133  Sum_probs=38.5

Q ss_pred             hHHHHHHHHcCC-eEEEeCCCCHH-----------HHHHHHHcCCCcEEecchHHhhCCcHHHH
Q 046574           12 HSLLLMRKAFKG-TFLVAGGYDRE-----------DGNKAIAEGRADLVVYGRFFLANPDLPRR   63 (104)
Q Consensus        12 ~~~~~ir~~~~~-pvi~~Ggi~~~-----------~ae~~l~~g~~DlVa~gR~~lanPdl~~r   63 (104)
                      +.+..||+..+. .++++.||.+.           .+.++++.| +|++.+||+....+|-...
T Consensus       166 ~e~~~ir~~~~~~f~~vtPGIr~~g~~~gDQ~Rv~T~~~a~~aG-ad~iVvGr~I~~a~dp~~a  228 (259)
T 3tfx_A          166 LEVKKLHENIGDDFLYVTPGIRPAGNAKDDQSRVATPKMAKEWG-SSAIVVGRPITLASDPKAA  228 (259)
T ss_dssp             GGHHHHHHHHCSSSEEEECCCCCC-----------CHHHHHHTT-CSEEEECHHHHTSSSHHHH
T ss_pred             HHHHHHHhhcCCccEEEcCCcCCCCCCcCCccccCCHHHHHHcC-CCEEEEChHHhCCCCHHHH
Confidence            456678888853 57788999322           267888888 7999999999988776543

>1hg3_A Triosephosphate isomerase; thermostability, tetrameric; 2.7A {Pyrococcus woesei} SCOP: c.1.1.1

Probab=91.87  E-value=0.43  Score=34.51  Aligned_cols=55  Identities=20%  Similarity=0.119  Sum_probs=39.7

Q ss_pred             cchHHHHHHHHcC-CeEEEeCCCC-HHHHHHHHHcCCCcEEecchHHhhCCcHHHHHh
Q 046574           10 CPHSLLLMRKAFK-GTFLVAGGYD-REDGNKAIAEGRADLVVYGRFFLANPDLPRRFE   65 (104)
Q Consensus        10 ~~~~~~~ir~~~~-~pvi~~Ggi~-~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~   65 (104)
                      .++..+.+|+..+ .+++.-||++ .+.++.+.+. .+|.+.+|..++.-+|+...++
T Consensus       163 ~~~~~~~ir~~~~~~~ilyggsV~~~n~~~~~~~~-~vDG~LVG~a~l~a~~~~~~i~  219 (225)
T 1hg3_A          163 ITNTVELVKKVNPEVKVLCGAGISTGEDVKKAIEL-GTVGVLLASGVTKAKDPEKAIW  219 (225)
T ss_dssp             HHHHHHHHHHHCTTSEEEEESSCCSHHHHHHHHHT-TCSEEEESHHHHTCSSHHHHHH
T ss_pred             HHHHHHHHHhccCCCEEEEeCCCCcHHHHHHHHhC-CCCEEEeCHHHHCCcCHHHHHH
Confidence            3345556777654 5788889995 5555555444 5899999999999999877654

>4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B*

Probab=91.82  E-value=0.21  Score=40.80  Aligned_cols=44  Identities=25%  Similarity=0.378  Sum_probs=36.0

Q ss_pred             HHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHH
Q 046574           17 MRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLP   61 (104)
Q Consensus        17 ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~   61 (104)
                      .++.+++|||+-||| ..-++-++|..| +|+|.+|..|.-.-+-|
T Consensus       379 ~a~~~~vpvIADGGI~~sGDi~KAlaaG-Ad~VMlGsllAGt~EsP  423 (556)
T 4af0_A          379 FASRFGIPCIADGGIGNIGHIAKALALG-ASAVMMGGLLAGTTESP  423 (556)
T ss_dssp             HHGGGTCCEEEESCCCSHHHHHHHHHTT-CSEEEESTTTTTBTTSS
T ss_pred             HHHHcCCCEEecCCcCcchHHHHHhhcC-CCEEEEchhhccccCCC
Confidence            445567899999999 888888999999 79999999887555443

>1rvk_A Isomerase/lactonizing enzyme; enolase superfamily, MR.GI-17937161, NYSGXRC, target T1522, structural genomics, PSI; 1.70A {Agrobacterium tumefaciens} SCOP: c.1.11.2 d.54.1.1

Probab=91.71  E-value=0.31  Score=36.96  Aligned_cols=39  Identities=10%  Similarity=0.045  Sum_probs=35.3

Q ss_pred             hHHHHHHHHcCCeEEEeCCC-C-HHHHHHHHHcCCCcEEec
Q 046574           12 HSLLLMRKAFKGTFLVAGGY-D-REDGNKAIAEGRADLVVY   50 (104)
Q Consensus        12 ~~~~~ir~~~~~pvi~~Ggi-~-~~~ae~~l~~g~~DlVa~   50 (104)
                      .....+++.+++||++.+.+ + +++++++++++.+|+|.+
T Consensus       241 ~~~~~l~~~~~iPIa~dE~~~~~~~~~~~~i~~~~~d~v~i  281 (382)
T 1rvk_A          241 SSYKWLSDNLDIPVVGPESAAGKHWHRAEWIKAGACDILRT  281 (382)
T ss_dssp             HHHHHHHHHCSSCEEECSSCSSHHHHHHHHHHTTCCSEEEE
T ss_pred             HHHHHHHhhCCCCEEEeCCccCcHHHHHHHHHcCCCCEEee
Confidence            45667889899999999999 9 999999999999999987

>1w0m_A TIM, triosephosphate isomerase; glycolysis, gluconeogenesis; 2.5A {Thermoproteus tenax} SCOP: c.1.1.1

Probab=91.18  E-value=0.56  Score=33.94  Aligned_cols=54  Identities=13%  Similarity=0.143  Sum_probs=38.9

Q ss_pred             chHHHHHHHHcC-CeEEEeCCCC-HHHHHHHHHcCCCcEEecchHHhhCCcHHHHHh
Q 046574           11 PHSLLLMRKAFK-GTFLVAGGYD-REDGNKAIAEGRADLVVYGRFFLANPDLPRRFE   65 (104)
Q Consensus        11 ~~~~~~ir~~~~-~pvi~~Ggi~-~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~   65 (104)
                      +++.+.+|+..+ .+++.-||++ .+.++.+.+. .+|.+.+|..++.-+|+...++
T Consensus       161 ~~~~~~ir~~~~~~~ilyggsV~~~n~~~~~~~~-giDG~LVG~a~l~a~~~~~~i~  216 (226)
T 1w0m_A          161 VETVGLVSRHFPEVSVITGAGIESGDDVAAALRL-GTRGVLLASAAVKAKDPYAKIV  216 (226)
T ss_dssp             HHHHHHHHHHCTTSEEEEESSCCSHHHHHHHHHT-TCSEEEECHHHHTCSSHHHHHH
T ss_pred             HHHHHHHHhccCCCEEEEeCCCCcHHHHHHHHhC-CCCEEEECHHHHCCcCHHHHHH
Confidence            344455776554 5788889994 5555555544 4899999999999999876654

>4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase; 1.64A {Vibrionales bacterium swat-3}

Probab=91.03  E-value=0.39  Score=34.93  Aligned_cols=55  Identities=25%  Similarity=0.298  Sum_probs=43.0

Q ss_pred             hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHhh-CCCC
Q 046574           12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEF-NAPL   70 (104)
Q Consensus        12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~~-g~~l   70 (104)
                      +..+.+++.+...++..|.+ +.++++.+++.| +|+|...-   .||++++..+. |.++
T Consensus        74 e~I~~l~~~~~~~~iGaGTVlt~~~a~~Ai~AG-A~fIvsP~---~~~~vi~~~~~~gi~~  130 (232)
T 4e38_A           74 EAIRLLRQAQPEMLIGAGTILNGEQALAAKEAG-ATFVVSPG---FNPNTVRACQEIGIDI  130 (232)
T ss_dssp             HHHHHHHHHCTTCEEEEECCCSHHHHHHHHHHT-CSEEECSS---CCHHHHHHHHHHTCEE
T ss_pred             HHHHHHHHhCCCCEEeECCcCCHHHHHHHHHcC-CCEEEeCC---CCHHHHHHHHHcCCCE
Confidence            46667888887788999999 999999999999 79998653   57887766544 5554

>2p8b_A Mandelate racemase/muconate lactonizing enzyme family protein; enolase superfamily, prediction of function; HET: NSK; 1.70A {Bacillus cereus atcc 14579} PDB: 2p88_A* 2p8c_A*

Probab=90.96  E-value=0.34  Score=36.55  Aligned_cols=41  Identities=15%  Similarity=0.148  Sum_probs=35.9

Q ss_pred             hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecch
Q 046574           12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGR   52 (104)
Q Consensus        12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR   52 (104)
                      .....+++.+++||++.+.+ ++++++++++.+.+|+|.+-.
T Consensus       227 ~~~~~l~~~~~iPI~~dE~~~~~~~~~~~i~~~~~d~v~ik~  268 (369)
T 2p8b_A          227 DAMAHIRSKTDLPLMIDEGLKSSREMRQIIKLEAADKVNIKL  268 (369)
T ss_dssp             HHHHHHHHTCCSCEEESTTCCSHHHHHHHHHHTCCSEEEECH
T ss_pred             HHHHHHHHhCCCCEEeCCCCCCHHHHHHHHHhCCCCEEEeec
Confidence            35667888889999999999 999999999999999998843

>2qdd_A Mandelate racemase/muconate lactonizing enzyme; enolase, structural genomics, PSI, protein structu initiative, nysgrc; 2.30A {Roseovarius nubinhibens} PDB: 3fvd_B

Probab=90.87  E-value=0.31  Score=36.97  Aligned_cols=43  Identities=9%  Similarity=0.010  Sum_probs=36.6

Q ss_pred             hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHH
Q 046574           12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFF   54 (104)
Q Consensus        12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~   54 (104)
                      +....+++.+++||++.+.+ ++++++++++++.+|+|.+-...
T Consensus       227 ~~~~~l~~~~~iPI~~dE~~~~~~~~~~~i~~~~~d~v~ik~~~  270 (378)
T 2qdd_A          227 DQCAHVARRVANPIMLDECLHEFSDHLAAWSRGACEGVKIKPNR  270 (378)
T ss_dssp             HHHHHHHTTCCSCEEECTTCCSHHHHHHHHHHTCCSEEEECHHH
T ss_pred             HHHHHHHHhCCCCEEECCCcCCHHHHHHHHHhCCCCEEEecccc
Confidence            45567888888999999999 99999999999999999884433

>1nu5_A Chloromuconate cycloisomerase; enzyme, dehalogenation; 1.95A {Pseudomonas SP} SCOP: c.1.11.2 d.54.1.1

Probab=90.67  E-value=0.47  Score=35.77  Aligned_cols=39  Identities=8%  Similarity=-0.008  Sum_probs=35.2

Q ss_pred             hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEec
Q 046574           12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVY   50 (104)
Q Consensus        12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~   50 (104)
                      .....+++.+++||++.+.+ ++++++++++.+.+|+|.+
T Consensus       229 ~~~~~l~~~~~ipIa~dE~~~~~~~~~~~i~~~~~d~v~i  268 (370)
T 1nu5_A          229 GALRRLTEQNGVAILADESLSSLSSAFELARDHAVDAFSL  268 (370)
T ss_dssp             HHHHHHHHHCSSEEEESTTCCSHHHHHHHHHTTCCSEEEE
T ss_pred             HHHHHHHHhCCCCEEeCCCCCCHHHHHHHHHhCCCCEEEE
Confidence            45667888899999999999 9999999999999999988

>2gl5_A Putative dehydratase protein; structural genomics, protein structure initiati nysgxrc; 1.60A {Salmonella typhimurium} SCOP: c.1.11.2 d.54.1.1 PDB: 4e6m_A*

Probab=90.67  E-value=0.34  Score=37.13  Aligned_cols=39  Identities=3%  Similarity=-0.070  Sum_probs=35.2

Q ss_pred             hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEec
Q 046574           12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVY   50 (104)
Q Consensus        12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~   50 (104)
                      +....+++.+++||++.+.+ ++++++++++++.+|+|.+
T Consensus       259 ~~~~~l~~~~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~i  298 (410)
T 2gl5_A          259 DNMQKVSRSTTIPIATGERSYTRWGYRELLEKQSIAVAQP  298 (410)
T ss_dssp             HHHHHHHHHCSSCEEECTTCCTTHHHHHHHHTTCCSEECC
T ss_pred             HHHHHHHhhCCCCEEecCCcCCHHHHHHHHHcCCCCEEec
Confidence            45677899999999999999 9999999999999999877

>2pp0_A L-talarate/galactarate dehydratase; enolase superfamily, LYA; 2.20A {Salmonella typhimurium} PDB: 2pp1_A* 2pp3_A*

Probab=90.63  E-value=0.42  Score=36.67  Aligned_cols=39  Identities=10%  Similarity=0.057  Sum_probs=35.2

Q ss_pred             hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEec
Q 046574           12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVY   50 (104)
Q Consensus        12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~   50 (104)
                      +....+++.+++||++.+.+ ++++++++++.|.+|+|.+
T Consensus       261 ~~~~~l~~~~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~i  300 (398)
T 2pp0_A          261 EGHAQLAAALDTPIATGEMLTSFREHEQLILGNASDFVQP  300 (398)
T ss_dssp             HHHHHHHHHCSSCEEECTTCCSHHHHHHHHHTTCCSEECC
T ss_pred             HHHHHHHhhCCCCEEecCCcCCHHHHHHHHHcCCCCEEEe
Confidence            45667899999999999999 9999999999999999887

>1ypf_A GMP reductase; GUAC, purines, pyrimidines, nucleosides, nucleotides, nucleo nucleoside interconversions, spine, structural genomics; 1.80A {Bacillus anthracis} PDB: 2a1y_A*

Probab=90.50  E-value=0.26  Score=37.13  Aligned_cols=38  Identities=21%  Similarity=0.309  Sum_probs=30.9

Q ss_pred             hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEec
Q 046574           12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVY   50 (104)
Q Consensus        12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~   50 (104)
                      +..+.+++.++++++..|++ +++.|+.+++.| +|.|.+
T Consensus       138 ~~i~~lr~~~~~~~vi~G~v~s~e~A~~a~~aG-ad~Ivv  176 (336)
T 1ypf_A          138 NMIQHIKKHLPESFVIAGNVGTPEAVRELENAG-ADATKV  176 (336)
T ss_dssp             HHHHHHHHHCTTSEEEEEEECSHHHHHHHHHHT-CSEEEE
T ss_pred             HHHHHHHHhCCCCEEEECCcCCHHHHHHHHHcC-CCEEEE
Confidence            35677888887666666756 999999999999 799888

>3paj_A Nicotinate-nucleotide pyrophosphorylase, carboxyl; TIM barrel, pyridin dicarboxylate, 5-phospho-alpha-D-ribose 1-diphosphate; 2.00A {Vibrio cholerae o1 biovar el tor}

Probab=90.47  E-value=0.44  Score=36.41  Aligned_cols=39  Identities=13%  Similarity=0.198  Sum_probs=31.0

Q ss_pred             HHHHHHHc--CCeEEEeCCCCHHHHHHHHHcCCCcEEecchH
Q 046574           14 LLLMRKAF--KGTFLVAGGYDREDGNKAIAEGRADLVVYGRF   53 (104)
Q Consensus        14 ~~~ir~~~--~~pvi~~Ggi~~~~ae~~l~~g~~DlVa~gR~   53 (104)
                      ++.+.+.+  ..++.++|||+++.+.+..+.| +|+|++|..
T Consensus       265 l~~av~~l~~~v~ieaSGGIt~~~I~~~a~tG-VD~isvGal  305 (320)
T 3paj_A          265 MREAVKINAGRAALENSGNITLDNLKECAETG-VDYISVGAL  305 (320)
T ss_dssp             HHHHHHHHTTSSEEEEESSCCHHHHHHHHTTT-CSEEECTHH
T ss_pred             HHHHHHHhCCCCeEEEECCCCHHHHHHHHHcC-CCEEEECce
Confidence            33444444  3589999999999999999888 799999973

>2o56_A Putative mandelate racemase; dehydratase, structural genomics, protein structure initiati 2; 2.00A {Salmonella typhimurium}

Probab=90.24  E-value=0.37  Score=36.89  Aligned_cols=39  Identities=5%  Similarity=-0.054  Sum_probs=35.1

Q ss_pred             hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEec
Q 046574           12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVY   50 (104)
Q Consensus        12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~   50 (104)
                      +....+++.+++||++.+.+ ++++++++++++.+|+|.+
T Consensus       256 ~~~~~l~~~~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~i  295 (407)
T 2o56_A          256 AQMKQVADKVNIPLAAGERIYWRWGYRPFLENGSLSVIQP  295 (407)
T ss_dssp             HHHHHHHHHCCSCEEECTTCCHHHHHHHHHHTTCCSEECC
T ss_pred             HHHHHHHHhCCCCEEeCCCcCCHHHHHHHHHcCCCCEEec
Confidence            45677899999999999999 9999999999999999877

>2hzg_A Mandelate racemase/muconate lactonizing enzyme/EN superfamily; structural genomics, predicted mandelate racemase, PSI; 2.02A {Rhodobacter sphaeroides}

Probab=90.01  E-value=0.39  Score=36.77  Aligned_cols=43  Identities=5%  Similarity=-0.086  Sum_probs=36.5

Q ss_pred             hHHHHHHH-HcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHH
Q 046574           12 HSLLLMRK-AFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFF   54 (104)
Q Consensus        12 ~~~~~ir~-~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~   54 (104)
                      .....+++ .+++||++.+.+ +++.++++++++.+|+|.+-...
T Consensus       236 ~~~~~l~~~~~~iPI~~dE~~~~~~~~~~~i~~~~~d~v~ik~~~  280 (401)
T 2hzg_A          236 AAHAALAGRGARVRIAGGEAAHNFHMAQHLMDYGRIGFIQIDCGR  280 (401)
T ss_dssp             HHHHHHHTTCCSSEEEECTTCSSHHHHHHHHHHSCCSEEEECHHH
T ss_pred             HHHHHHHhhCCCCCEEecCCcCCHHHHHHHHHCCCCCEEEeCcch
Confidence            45567888 788999999999 99999999999999999884333

>2qde_A Mandelate racemase/muconate lactonizing enzyme FA protein; PSI-II, NYSGXRC, enolase, structural genomics, protei structure initiative, PSI-2; 1.93A {Azoarcus SP}

Probab=89.95  E-value=0.39  Score=36.71  Aligned_cols=39  Identities=15%  Similarity=0.142  Sum_probs=34.8

Q ss_pred             hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEec
Q 046574           12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVY   50 (104)
Q Consensus        12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~   50 (104)
                      .....+++.+++||++.+.+ +++++++++++|.+|+|.+
T Consensus       230 ~~~~~l~~~~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~i  269 (397)
T 2qde_A          230 DGMARLRGKVATPIYADESAQELHDLLAIINKGAADGLMI  269 (397)
T ss_dssp             HHHHHHHTTCSSCEEESTTCCSHHHHHHHHHHTCCSEEEE
T ss_pred             HHHHHHHhhCCCCEEEeCCcCCHHHHHHHHHcCCCCEEEE
Confidence            45667888888999999999 9999999999999999887

>2gdq_A YITF; mandelate racemase/muconate lactonizing enzyme, TIM-barrel, octamer, structural genomics, PSI; 1.80A {Bacillus subtilis subsp} SCOP: c.1.11.2 d.54.1.1 PDB: 2gge_A

Probab=89.91  E-value=0.42  Score=36.39  Aligned_cols=39  Identities=5%  Similarity=0.037  Sum_probs=34.9

Q ss_pred             hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEec
Q 046574           12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVY   50 (104)
Q Consensus        12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~   50 (104)
                      .....+++.+++||++.+.+ ++++++++++.+.+|+|.+
T Consensus       226 ~~~~~l~~~~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~i  265 (382)
T 2gdq_A          226 QDYAMLRSRLSVPVAGGENMKGPAQYVPLLSQRCLDIIQP  265 (382)
T ss_dssp             HHHHHHHTTCSSCEEECTTCCSHHHHHHHHHTTCCSEECC
T ss_pred             HHHHHHHhhCCCCEEecCCcCCHHHHHHHHHcCCCCEEec
Confidence            45667888888999999999 9999999999999999887

>2poz_A Putative dehydratase; octamer, structural genomics, P protein structure initiative, NEW YORK SGX research center structural genomics, nysgxrc; 2.04A {Mesorhizobium loti}

Probab=89.89  E-value=0.35  Score=36.86  Aligned_cols=39  Identities=10%  Similarity=0.007  Sum_probs=35.0

Q ss_pred             hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEec
Q 046574           12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVY   50 (104)
Q Consensus        12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~   50 (104)
                      +....+++.+++||++.+.+ +++.++++++++.+|+|.+
T Consensus       240 ~~~~~l~~~~~ipIa~dE~~~~~~~~~~~i~~~~~d~v~i  279 (392)
T 2poz_A          240 GALKVISEQIPLPIAVGERVYTRFGFRKIFELQACGIIQP  279 (392)
T ss_dssp             HHHHHHHHHCSSCEEECTTCCHHHHHHHHHTTTCCSEECC
T ss_pred             HHHHHHHhhCCCCEEecCCcCCHHHHHHHHHcCCCCEEec
Confidence            45677889999999999999 9999999999999999877

>3c2e_A Nicotinate-nucleotide pyrophosphorylase; qprtase, prtase, BNA6, mechanism, cytoplasm, glycosyltransferase, nucleus; 1.90A {Saccharomyces cerevisiae} PDB: 3c2f_A* 3c2o_A* 3c2v_A* 3c2r_A*

Probab=89.88  E-value=0.094  Score=39.35  Aligned_cols=32  Identities=9%  Similarity=0.166  Sum_probs=23.0

Q ss_pred             CeEEEeCCCCHHHHHHHHHcCCCcEEecchHHh
Q 046574           23 GTFLVAGGYDREDGNKAIAEGRADLVVYGRFFL   55 (104)
Q Consensus        23 ~pvi~~Ggi~~~~ae~~l~~g~~DlVa~gR~~l   55 (104)
                      .++.++|||+++.+.+.++.| +|.|++|....
T Consensus       250 v~I~ASGGIt~~ni~~~~~~G-vD~i~vGs~i~  281 (294)
T 3c2e_A          250 FLLECSGGLNLDNLEEYLCDD-IDIYSTSSIHQ  281 (294)
T ss_dssp             CEEEEECCCCC------CCCS-CSEEECGGGTS
T ss_pred             eEEEEECCCCHHHHHHHHHcC-CCEEEEechhc
Confidence            689999999999999999888 79999998743

>2ox4_A Putative mandelate racemase; enolase, dehydratase, structural genomics, protein structure initiative, PSI, nysgrc; 1.80A {Zymomonas mobilis}

Probab=89.73  E-value=0.39  Score=36.68  Aligned_cols=39  Identities=10%  Similarity=-0.034  Sum_probs=35.1

Q ss_pred             hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEec
Q 046574           12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVY   50 (104)
Q Consensus        12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~   50 (104)
                      +....+++.+++||++.+.+ +++.++++++.+.+|+|.+
T Consensus       250 ~~~~~l~~~~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~i  289 (403)
T 2ox4_A          250 RLLKEAKKKIDIPLASGERIYSRWGFLPFLEDRSIDVIQP  289 (403)
T ss_dssp             HHHHHHHHTCCSCEEECTTCCHHHHHHHHHHTTCCSEECC
T ss_pred             HHHHHHHHhCCCCEEecCCcCCHHHHHHHHHcCCCCEEec
Confidence            45677899899999999999 9999999999999999887

>3mqt_A Mandelate racemase/muconate lactonizing protein; PSI-II, NYSGXRC, muconate lactonizing EN structural genomics, protein structure initiative; 2.10A {Shewanella pealeana}

Probab=89.60  E-value=0.31  Score=37.40  Aligned_cols=39  Identities=10%  Similarity=-0.028  Sum_probs=35.1

Q ss_pred             hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEec
Q 046574           12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVY   50 (104)
Q Consensus        12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~   50 (104)
                      .....+++.+++||++.+.+ ++++++++++.|.+|+|.+
T Consensus       242 ~~~~~l~~~~~iPIa~dE~~~~~~~~~~~l~~~~~d~v~~  281 (394)
T 3mqt_A          242 IGHQKLAAAINTRLCGAEMSTTRFEAQEWLEKTGISVVQS  281 (394)
T ss_dssp             HHHHHHHHHSSSEEEECTTCCHHHHHHHHHHHHCCSEECC
T ss_pred             HHHHHHHhhCCCCEEeCCCcCCHHHHHHHHHcCCCCeEec
Confidence            45677999999999999999 8999999999999999887

>3vkj_A Isopentenyl-diphosphate delta-isomerase; type 2 isopentenyl diphosphate isomerase; HET: FNR; 1.70A {Sulfolobus shibatae} PDB: 2zrv_A* 2zrw_A* 2zrx_A* 2zry_A* 2zrz_A* 3b03_A* 3b04_A* 3b05_A* 3b06_A* 2zru_A*

Probab=89.52  E-value=0.49  Score=36.44  Aligned_cols=38  Identities=16%  Similarity=0.112  Sum_probs=31.0

Q ss_pred             hHHHHHHHHcCCeEEEe---CCCCHHHHHHHHHcCCCcEEec
Q 046574           12 HSLLLMRKAFKGTFLVA---GGYDREDGNKAIAEGRADLVVY   50 (104)
Q Consensus        12 ~~~~~ir~~~~~pvi~~---Ggi~~~~ae~~l~~g~~DlVa~   50 (104)
                      +..+.+++.+++|||+=   +|++++.|+.+++.| +|.|.+
T Consensus       177 ~~i~~i~~~~~vPVivK~vG~g~s~~~A~~l~~aG-ad~I~V  217 (368)
T 3vkj_A          177 EKLRDISKELSVPIIVKESGNGISMETAKLLYSYG-IKNFDT  217 (368)
T ss_dssp             HHHHHHHTTCSSCEEEECSSSCCCHHHHHHHHHTT-CCEEEC
T ss_pred             HHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHHhCC-CCEEEE
Confidence            35667888888999993   446999999999999 798877

>2zad_A Muconate cycloisomerase; muconate lactonizing enzyme (MLE), TM0006, struct genomics, NPPSFA; HET: 1PE; 1.60A {Thermotoga maritima} PDB: 3deq_A 3der_A* 3des_A* 3dfy_A

Probab=89.48  E-value=0.75  Score=34.33  Aligned_cols=57  Identities=11%  Similarity=-0.047  Sum_probs=46.6

Q ss_pred             hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEec--chHHhhCCcHHHHHhhCC
Q 046574           12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVY--GRFFLANPDLPRRFEFNA   68 (104)
Q Consensus        12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~--gR~~lanPdl~~ri~~g~   68 (104)
                      .....+++.+++||++.+.+ ++++++++++.|.+|+|.+  +|+-|.+.--+.++.+..
T Consensus       225 ~~~~~l~~~~~ipia~dE~~~~~~~~~~~i~~~~~d~v~ik~~~GGit~~~~i~~~A~~~  284 (345)
T 2zad_A          225 EGLKFVRFHSPFPVAADESARTKFDVMRLVKEEAVDYVNIKLMKSGISDALAIVEIAESS  284 (345)
T ss_dssp             HHHHHHHHHSSSCEEESTTCCSHHHHHHHHHHTCCSEEEECHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHhCCCCEEEeCCcCCHHHHHHHHHhCCCCEEEEecccccHHHHHHHHHHHHHc
Confidence            45667888899999999999 9999999999999999999  777777765555555533

>3mkc_A Racemase; metabolic process, PSI2, NYSGXRC, structu genomics, protein structure initiative, NEW YORK SGX resear for structural genomics; 1.77A {Pseudovibrio SP} PDB: 3nzg_A

Probab=89.36  E-value=0.38  Score=37.01  Aligned_cols=39  Identities=13%  Similarity=0.090  Sum_probs=35.1

Q ss_pred             hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEec
Q 046574           12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVY   50 (104)
Q Consensus        12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~   50 (104)
                      .....+++.+++||++.+.+ ++++++++++.|.+|+|.+
T Consensus       247 ~~~~~l~~~~~iPIa~dE~~~~~~~~~~~l~~~~~d~v~~  286 (394)
T 3mkc_A          247 SGHAKLVENTRSRICGAEMSTTRFEAEEWITKGKVHLLQS  286 (394)
T ss_dssp             HHHHHHHHHCSSCBEECTTCCHHHHHHHHHHTTCCSEECC
T ss_pred             HHHHHHHhhCCCCEEeCCCCCCHHHHHHHHHcCCCCeEec
Confidence            45677999999999999999 8999999999999999887

>3rcy_A Mandelate racemase/muconate lactonizing enzyme-LI protein; structural genomics, protein structure initiative; HET: RIB; 1.99A {Roseovarius SP} PDB: 3t4w_A

Probab=89.33  E-value=0.59  Score=36.50  Aligned_cols=39  Identities=10%  Similarity=0.131  Sum_probs=35.2

Q ss_pred             hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEec
Q 046574           12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVY   50 (104)
Q Consensus        12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~   50 (104)
                      .....+++.+++||++.+.+ ++.+++++++.|.+|+|.+
T Consensus       244 ~~~~~l~~~~~iPIa~dE~~~~~~~~~~~l~~g~~D~v~~  283 (433)
T 3rcy_A          244 GAMAQVARAVRIPVATGERLTTKAEFAPVLREGAAAILQP  283 (433)
T ss_dssp             HHHHHHHHHSSSCEEECTTCCSHHHHHHHHHTTCCSEECC
T ss_pred             HHHHHHHhccCCCEEecCCCCCHHHHHHHHHcCCCCEEEe
Confidence            45677999999999999999 9999999999999999877

>1sjd_A N-acylamino acid racemase; lyase, isomerase; HET: NPG; 1.87A {Amycolatopsis SP} SCOP: c.1.11.2 d.54.1.1 PDB: 1sja_A* 1sjb_A* 1sjc_A*

Probab=89.30  E-value=0.53  Score=35.46  Aligned_cols=39  Identities=10%  Similarity=0.109  Sum_probs=34.7

Q ss_pred             hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEec
Q 046574           12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVY   50 (104)
Q Consensus        12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~   50 (104)
                      .....+++.+++||++.+.+ ++++++++++.|.+|+|.+
T Consensus       223 ~~~~~l~~~~~ipIa~dE~~~~~~~~~~~i~~~~~d~v~i  262 (368)
T 1sjd_A          223 LGHAELARRIQTPICLDESIVSARAAADAIKLGAVQIVNI  262 (368)
T ss_dssp             HHHHHHHTTCSSCEEESTTCCSHHHHHHHHHTTCCSEEEE
T ss_pred             HHHHHHHHhCCCCEEECCCcCCHHHHHHHHHcCCCCEEEe
Confidence            45567888888999999999 9999999999999999887

>1vc4_A Indole-3-glycerol phosphate synthase; lyase, tryptophan biosynthesis, riken structural genomics/PR initiative, RSGI, structural genomics; 1.80A {Thermus thermophilus} SCOP: c.1.2.4

Probab=89.27  E-value=1.8  Score=31.42  Aligned_cols=51  Identities=22%  Similarity=0.073  Sum_probs=42.0

Q ss_pred             chHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHHHHH
Q 046574           11 PHSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLPRRF   64 (104)
Q Consensus        11 ~~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri   64 (104)
                      ...++.+++.++.||+.-+.| ++.+...+...| +|.|.++-..+.  +...++
T Consensus        95 ~~~l~~i~~~v~lPvl~kdfI~d~~qi~~a~~~G-AD~VlL~~~~l~--~~l~~l  146 (254)
T 1vc4_A           95 LLDLKRVREAVDLPLLRKDFVVDPFMLEEARAFG-ASAALLIVALLG--ELTGAY  146 (254)
T ss_dssp             HHHHHHHHHHCCSCEEEESCCCSHHHHHHHHHTT-CSEEEEEHHHHG--GGHHHH
T ss_pred             HHHHHHHHHhcCCCEEECCcCCCHHHHHHHHHcC-CCEEEECccchH--HHHHHH
Confidence            356778999999999988888 888999999888 899999998887  455544

>2c6q_A GMP reductase 2; TIM barrel, metal-binding, NADP, oxidoreductase, potassium; HET: IMP NDP; 1.70A {Homo sapiens} PDB: 2bzn_A* 2a7r_A* 2ble_A* 2bwg_A*

Probab=89.10  E-value=0.56  Score=35.73  Aligned_cols=39  Identities=26%  Similarity=0.308  Sum_probs=30.4

Q ss_pred             hHHHHHHHHc-CCeEEEeCCCCHHHHHHHHHcCCCcEEecc
Q 046574           12 HSLLLMRKAF-KGTFLVAGGYDREDGNKAIAEGRADLVVYG   51 (104)
Q Consensus        12 ~~~~~ir~~~-~~pvi~~Ggi~~~~ae~~l~~g~~DlVa~g   51 (104)
                      +..+.+|+.+ ++||++.+..++++|+.+++.| +|+|.++
T Consensus       150 ~~i~~lr~~~~~~~vi~g~v~t~e~A~~a~~aG-aD~I~v~  189 (351)
T 2c6q_A          150 EFVKDVRKRFPQHTIMAGNVVTGEMVEELILSG-ADIIKVG  189 (351)
T ss_dssp             HHHHHHHHHCTTSEEEEEEECSHHHHHHHHHTT-CSEEEEC
T ss_pred             HHHHHHHHhcCCCeEEEEeCCCHHHHHHHHHhC-CCEEEEC
Confidence            3567788888 6788864444999999999999 7998553

>3go2_A Putative L-alanine-DL-glutamate epimerase; structural genomics, isomerase, PSI-2; 1.70A {Burkholderia xenovorans} PDB: 2oo6_A 3sn0_A 3sn1_A* 3sn4_A*

Probab=89.09  E-value=0.48  Score=36.59  Aligned_cols=39  Identities=8%  Similarity=0.047  Sum_probs=34.6

Q ss_pred             hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEec
Q 046574           12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVY   50 (104)
Q Consensus        12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~   50 (104)
                      .....+++.+++||++.+.+ ++++++++++.|.+|+|.+
T Consensus       252 ~~~~~l~~~~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~~  291 (409)
T 3go2_A          252 QGLAYVRNHSPHPISSCETLFGIREFKPFFDANAVDVAIV  291 (409)
T ss_dssp             HHHHHHHHTCSSCEEECTTCCHHHHHHHHHHTTCCSEEEE
T ss_pred             HHHHHHHhhCCCCEEeCCCcCCHHHHHHHHHhCCCCEEEe
Confidence            45677899999999999999 8999999999999999765

>3tr2_A Orotidine 5'-phosphate decarboxylase; purines, pyrimidines, nucleosides, nucleotides, lyase; 2.00A {Coxiella burnetii}

Probab=88.95  E-value=0.84  Score=33.12  Aligned_cols=50  Identities=32%  Similarity=0.434  Sum_probs=36.1

Q ss_pred             HHHHHHHHcC-CeEEEeCCCCHHH-----------HHHHHHcCCCcEEecchHHhhCCcHHHH
Q 046574           13 SLLLMRKAFK-GTFLVAGGYDRED-----------GNKAIAEGRADLVVYGRFFLANPDLPRR   63 (104)
Q Consensus        13 ~~~~ir~~~~-~pvi~~Ggi~~~~-----------ae~~l~~g~~DlVa~gR~~lanPdl~~r   63 (104)
                      .+..||+..+ ..++.+.||.++.           ..++++.| +|++.+||+....+|-...
T Consensus       167 e~~~ir~~~~~~fl~vtPGIr~~g~~~~dQ~rv~t~~~~~~aG-ad~lVvGr~I~~a~dp~~a  228 (239)
T 3tr2_A          167 EAALLRKQFDRNFLLVTPGIRLETDEKGDQKRVMTPRAAIQAG-SDYLVIGRPITQSTDPLKA  228 (239)
T ss_dssp             HHHHHHTTCCTTSEEEECCBC----------CCBCHHHHHHHT-CSEEEECHHHHTSSSHHHH
T ss_pred             hHHHHHHhcCCCcEEECCCcCCCCCCcCcccccCCHHHHHHcC-CCEEEEChHHhCCCCHHHH
Confidence            4456888775 3678889994332           56788888 7999999999987776543

>3dip_A Enolase; structural genomics, isomerase, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics, NYSGXRC, lyase; HET: SIC; 2.50A {Unidentified}

Probab=88.95  E-value=0.69  Score=35.76  Aligned_cols=39  Identities=8%  Similarity=0.123  Sum_probs=35.1

Q ss_pred             hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEec
Q 046574           12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVY   50 (104)
Q Consensus        12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~   50 (104)
                      .....+++.+++||++...+ ++++++++++.|.+|+|.+
T Consensus       255 ~~~~~l~~~~~iPIa~dE~~~~~~~~~~~l~~~~~d~v~~  294 (410)
T 3dip_A          255 PAVADLRRQTRAPICGGENLAGTRRFHEMLCADAIDFVML  294 (410)
T ss_dssp             HHHHHHHHHHCCCEEECTTCCSHHHHHHHHHTTCCSEEEE
T ss_pred             HHHHHHHhhCCCCEEecCCcCCHHHHHHHHHcCCCCeEee
Confidence            45677999999999999999 9999999999999999877

>3rr1_A GALD, putative D-galactonate dehydratase; enolase, magnesium binding site, lyase; 1.95A {Ralstonia pickettii} PDB: 3rra_A

Probab=88.90  E-value=0.5  Score=36.57  Aligned_cols=39  Identities=8%  Similarity=0.048  Sum_probs=35.0

Q ss_pred             hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEec
Q 046574           12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVY   50 (104)
Q Consensus        12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~   50 (104)
                      .....+++.+++||++.+.+ ++++++++++.|.+|+|.+
T Consensus       219 ~~~~~l~~~~~iPIa~dE~i~~~~~~~~~l~~~a~d~v~~  258 (405)
T 3rr1_A          219 ETYARLAAHTHLPIAAGERMFSRFDFKRVLEAGGVSILQP  258 (405)
T ss_dssp             HHHHHHHTTCSSCEEECTTCCSHHHHHHHHHHCCCSEECC
T ss_pred             HHHHHHHhcCCCCEEecCCcCCHHHHHHHHHHhCCCeEEE
Confidence            45677889889999999999 9999999999999999887

>2uv8_G Fatty acid synthase subunit beta (FAS1); fatty acid biosynthesis, malonyl/palmitoyl transferase, phosphopantetheine, transferase; HET: GVL FMN; 3.10A {Saccharomyces cerevisiae} PDB: 2vkz_G* 3hmj_G*

Probab=88.87  E-value=0.19  Score=46.53  Aligned_cols=56  Identities=13%  Similarity=0.214  Sum_probs=44.2

Q ss_pred             HHHHHHHcCCeEEEeCCC-CHHHHHHHH-----------HcCCCcEEecchHHhh------CCcHHHHHhhCCCC
Q 046574           14 LLLMRKAFKGTFLVAGGY-DREDGNKAI-----------AEGRADLVVYGRFFLA------NPDLPRRFEFNAPL   70 (104)
Q Consensus        14 ~~~ir~~~~~pvi~~Ggi-~~~~ae~~l-----------~~g~~DlVa~gR~~la------nPdl~~ri~~g~~l   70 (104)
                      ...+++.+++|||++||| +.+.+..+|           .-| +|.|.||..|++      .|.+-+.+......
T Consensus       754 ~~~v~~~~~ipviaaGGi~dg~~~~aaL~g~w~~~~g~~~lg-adGv~~GTrf~~t~Ea~~~~~~K~~iv~a~~~  827 (2051)
T 2uv8_G          754 YSKIRRHPNIMLIFGSGFGSADDTYPYLTGEWSTKFDYPPMP-FDGFLFGSRVMIAKEVKTSPDAKKCIAACTGV  827 (2051)
T ss_dssp             HHHHTTCTTBCCEEESSCCSHHHHTHHHHTCGGGTTTCCCCC-CSCEECSGGGTTSTTSCCCHHHHHHHHTCCCC
T ss_pred             HHHHHhcCCceEEEeCCCCCHHHHHHHHccccccccCccCCC-CceeeechHHHhCcccccCHHHHHHHHhCCCC
Confidence            466788888999999999 999999999           445 799999999986      45555666664444

>3sbf_A Mandelate racemase / muconate lactonizing enzyme; enolase fold, acid sugar dehydratase, D-araninonate, isomera; HET: EPE D8T; 1.50A {Vibrionales bacterium swat-3} PDB: 3r25_A 3dfh_A 4gis_A 4gir_A 4ggh_A 3gy1_A

Probab=88.81  E-value=0.55  Score=36.11  Aligned_cols=39  Identities=18%  Similarity=0.150  Sum_probs=35.0

Q ss_pred             hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEec
Q 046574           12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVY   50 (104)
Q Consensus        12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~   50 (104)
                      .....+++.+++||++...+ ++++++++++.|.+|+|.+
T Consensus       242 ~~~~~l~~~~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~~  281 (401)
T 3sbf_A          242 EWLDNIRSQSSVSLGLGELFNNPEEWKSLIANRRIDFIRC  281 (401)
T ss_dssp             GGHHHHHTTCCCCEEECTTCCSHHHHHHHHHTTCCSEECC
T ss_pred             HHHHHHHhhCCCCEEeCCccCCHHHHHHHHhcCCCCEEec
Confidence            35667999999999999999 9999999999999999877

>3jva_A Dipeptide epimerase; enolase superfamily, isomerase; 1.70A {Enterococcus faecalis V583} PDB: 3jw7_A* 3jzu_A* 3k1g_A* 3kum_A*

Probab=88.62  E-value=0.76  Score=34.64  Aligned_cols=40  Identities=15%  Similarity=0.277  Sum_probs=35.4

Q ss_pred             hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecc
Q 046574           12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYG   51 (104)
Q Consensus        12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~g   51 (104)
                      .....+++.+++||++.+.+ ++++++++++.+.+|+|.+-
T Consensus       224 ~~~~~l~~~~~iPIa~dE~~~~~~~~~~~l~~~~~d~v~~k  264 (354)
T 3jva_A          224 EGLKYVTSQVNTTIMADESCFDAQDALELVKKGTVDVINIK  264 (354)
T ss_dssp             HHHHHHHHHCSSEEEESTTCCSHHHHHHHHHHTCCSEEEEC
T ss_pred             HHHHHHHHhCCCCEEEcCCcCCHHHHHHHHHcCCCCEEEEC
Confidence            35667899999999999999 99999999999999998873

>2qq6_A Mandelate racemase/muconate lactonizing enzyme- like protein; enolase, Mg ION, PSI-2, NYSGXRC, structural genomics; 2.90A {Rubrobacter xylanophilus dsm 9941}

Probab=88.59  E-value=0.59  Score=35.84  Aligned_cols=39  Identities=18%  Similarity=0.151  Sum_probs=34.9

Q ss_pred             hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEec
Q 046574           12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVY   50 (104)
Q Consensus        12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~   50 (104)
                      +....+++.+++||++.+.+ ++++++++++.+.+|+|.+
T Consensus       251 ~~~~~l~~~~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~i  290 (410)
T 2qq6_A          251 DALAEVRRSTSTPICAGENVYTRFDFRELFAKRAVDYVMP  290 (410)
T ss_dssp             HHHHHHHTTCSSCEEECTTCCSHHHHHHHHHTTCCSEECC
T ss_pred             HHHHHHHhhCCCCEEeCCCcCCHHHHHHHHHcCCCCEEec
Confidence            45667888888999999999 9999999999999999987

>3stp_A Galactonate dehydratase, putative; PSI biology, structural genomics, NEW YORK structural genomi research consortium; 1.88A {Labrenzia aggregata iam 12614} PDB: 3sqs_A 3ssz_A

Probab=88.48  E-value=0.68  Score=35.92  Aligned_cols=39  Identities=5%  Similarity=-0.109  Sum_probs=35.2

Q ss_pred             hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEec
Q 046574           12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVY   50 (104)
Q Consensus        12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~   50 (104)
                      .....+++.+++||++...+ ++.+++++++.|.+|+|.+
T Consensus       271 ~~~~~l~~~~~iPIa~dE~~~~~~~~~~li~~~a~D~v~i  310 (412)
T 3stp_A          271 AGYAELNAMNIVPISGGEHEFSVIGCAELINRKAVSVLQY  310 (412)
T ss_dssp             HHHHHHHHTCSSCEEECTTCCSHHHHHHHHHTTCCSEECC
T ss_pred             HHHHHHHhCCCCCEEeCCCCCCHHHHHHHHHcCCCCEEec
Confidence            45677999899999999999 9999999999999999887

>1o4u_A Type II quinolic acid phosphoribosyltransferase; structural genomics, joint center for structural genomics, J protein structure initiative; 2.50A {Thermotoga maritima} SCOP: c.1.17.1 d.41.2.1

Probab=88.36  E-value=0.12  Score=38.71  Aligned_cols=33  Identities=24%  Similarity=0.232  Sum_probs=28.8

Q ss_pred             CCeEEEeCCCCHHHHHHHHHcCCCcEEecchHHh
Q 046574           22 KGTFLVAGGYDREDGNKAIAEGRADLVVYGRFFL   55 (104)
Q Consensus        22 ~~pvi~~Ggi~~~~ae~~l~~g~~DlVa~gR~~l   55 (104)
                      ..++.++|||+++.+.+..+.| +|+|++|...-
T Consensus       240 ~v~ieASGGIt~eni~~~a~tG-VD~IsvGslt~  272 (285)
T 1o4u_A          240 NVIVEVSGGITEENVSLYDFET-VDVISSSRLTL  272 (285)
T ss_dssp             TSEEEEEECCCTTTGGGGCCTT-CCEEEEGGGTS
T ss_pred             CceEEEECCCCHHHHHHHHHcC-CCEEEEeHHHc
Confidence            4699999999999999998888 89999998443

>3zen_D Fatty acid synthase; transferase, mycolic acid biosynthesis, multifunctional ENZY substrate channeling; HET: FMN; 7.50A {Mycobacterium smegmatis} PDB: 4b3y_A*

Probab=88.33  E-value=0.14  Score=48.90  Aligned_cols=54  Identities=17%  Similarity=0.114  Sum_probs=43.5

Q ss_pred             HHHHHHcCCeEEEeCCC-CHHHHHHHH-----------HcCCCcEEecchHHhhCC------cHHHHHhhCCC
Q 046574           15 LLMRKAFKGTFLVAGGY-DREDGNKAI-----------AEGRADLVVYGRFFLANP------DLPRRFEFNAP   69 (104)
Q Consensus        15 ~~ir~~~~~pvi~~Ggi-~~~~ae~~l-----------~~g~~DlVa~gR~~lanP------dl~~ri~~g~~   69 (104)
                      ..+++..++|||+.||| +++.+..++           .-| +|.|.+|..|++.+      .+.+.+.+-..
T Consensus       599 ~~ir~~~~iPViaaGGI~d~~~vaaal~g~ws~~~~~p~lG-AdGV~vGTrfl~t~Ea~~s~~~K~~l~~a~~  670 (3089)
T 3zen_D          599 SELRSRSNITICVGGGIGTPERSAEYLSGRWAEVHGYPLMP-IDGILVGTAAMATLEATTSPQVKQLLVETKG  670 (3089)
T ss_dssp             HHHTTCTTEEEEEESSCCCTTTTHHHHHTGGGGTTTCCCCC-CSEEECSSTTTTCTTSCBCHHHHHHHHHCCC
T ss_pred             HHHhhcCCCeEEEEeCCCCHHHHHHHhccccccccCccCCC-CCEEEecHHHHhCcccCCCHHHHHHHHhCCC
Confidence            55677778899999999 999999999           667 89999999999765      45566655444

>4e5t_A Mandelate racemase / muconate lactonizing enzyme, terminal domain protein; aldolase, structural genomics, biology; 2.90A {Labrenzia alexandrii}

Probab=88.31  E-value=0.54  Score=36.22  Aligned_cols=39  Identities=5%  Similarity=0.071  Sum_probs=35.0

Q ss_pred             hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEec
Q 046574           12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVY   50 (104)
Q Consensus        12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~   50 (104)
                      .....+++.+++||++.+.+ ++++++++++.|.+|+|.+
T Consensus       249 ~~~~~l~~~~~iPIa~dE~~~~~~~~~~~i~~~a~d~v~~  288 (404)
T 4e5t_A          249 EDMAEVARYTSIPVATGERLCTKYEFSRVLETGAASILQM  288 (404)
T ss_dssp             HHHHHHHHHCSSCEEECTTCCHHHHHHHHHHHTCCSEECC
T ss_pred             HHHHHHHhhCCCCEEeCCCcCCHHHHHHHHHhCCCCEEec
Confidence            45677999999999999999 8999999999999999877

>3eez_A Putative mandelate racemase/muconate lactonizing enzyme; structural genomics, unknown function, PSI-2, protein structure initiative; 2.80A {Silicibacter pomeroyi}

Probab=88.07  E-value=0.87  Score=34.71  Aligned_cols=47  Identities=11%  Similarity=0.090  Sum_probs=38.3

Q ss_pred             hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCC
Q 046574           12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANP   58 (104)
Q Consensus        12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanP   58 (104)
                      .....+++.+++||++.+.+ ++++++++++.+.+|+|.+-...+--+
T Consensus       227 ~~~~~l~~~~~iPIa~dE~~~~~~~~~~~l~~~~~d~v~ik~~~~GGi  274 (378)
T 3eez_A          227 DDIAAIRPLHSAPVSVDECLVTLQDAARVARDGLAEVFGIKLNRVGGL  274 (378)
T ss_dssp             HHHHHTGGGCCCCEEECTTCCSHHHHHHHHHTTCCSEEEEEHHHHTSH
T ss_pred             HHHHHHHhhCCCCEEECCCCCCHHHHHHHHHcCCCCEEEeCchhcCCH
Confidence            34567888889999999999 999999999999999998855544333

>3dg3_A Muconate cycloisomerase; muconate lactonizing enzyme, muconolactone binding; 1.60A {Mycobacterium smegmatis} PDB: 3dg6_A* 3dg7_A*

Probab=88.07  E-value=0.81  Score=34.64  Aligned_cols=39  Identities=13%  Similarity=0.123  Sum_probs=34.9

Q ss_pred             hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEec
Q 046574           12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVY   50 (104)
Q Consensus        12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~   50 (104)
                      .....+++.+++||++.+.+ ++++++++++.|.+|+|.+
T Consensus       226 ~~~~~l~~~~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~~  265 (367)
T 3dg3_A          226 LSRRRLVGQLDMPFIADESVPTPADVTREVLGGSATAISI  265 (367)
T ss_dssp             HHHHHHHHHCSSCEEECTTCSSHHHHHHHHHHTSCSEEEE
T ss_pred             HHHHHHHHhCCCCEEecCCcCCHHHHHHHHHcCCCCEEEe
Confidence            35667899999999999999 9999999999999999877

>3ozy_A Putative mandelate racemase; beta-alpha barrel, enolase superfamily member, M-xylarate, U function; HET: DXL; 1.30A {Bordetella bronchiseptica} PDB: 3ozm_A* 3h12_A 3op2_A*

Probab=88.04  E-value=0.51  Score=36.16  Aligned_cols=39  Identities=13%  Similarity=0.108  Sum_probs=34.6

Q ss_pred             hHHHHHH-HHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEec
Q 046574           12 HSLLLMR-KAFKGTFLVAGGY-DREDGNKAIAEGRADLVVY   50 (104)
Q Consensus        12 ~~~~~ir-~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~   50 (104)
                      .....++ +.+++||++.+.+ ++++++++++.+.+|+|.+
T Consensus       236 ~~~~~l~~~~~~iPIa~dE~i~~~~~~~~~i~~~~~d~v~i  276 (389)
T 3ozy_A          236 EGHRILRAQGTPVRIATGENLYTRNAFNDYIRNDAIDVLQA  276 (389)
T ss_dssp             HHHHHHHTTCCSSEEEECTTCCHHHHHHHHHHTTCCSEECC
T ss_pred             HHHHHHHhcCCCCCEEeCCCCCCHHHHHHHHHcCCCCEEEe
Confidence            3556788 8888999999999 8999999999999999887

>3i4k_A Muconate lactonizing enzyme; structural genomics, NYSGXRC, target 9450D, isomerase, PSI-2, protein structure initiative; 2.20A {Corynebacterium glutamicum}

Probab=87.99  E-value=0.83  Score=34.84  Aligned_cols=39  Identities=8%  Similarity=0.135  Sum_probs=34.9

Q ss_pred             hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEec
Q 046574           12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVY   50 (104)
Q Consensus        12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~   50 (104)
                      .....+++.+++||++.+.+ ++++++++++.|.+|+|.+
T Consensus       235 ~~~~~l~~~~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~~  274 (383)
T 3i4k_A          235 ETLREITRRTNVSVMADESVWTPAEALAVVKAQAADVIAL  274 (383)
T ss_dssp             HHHHHHHHHHCCEEEESTTCSSHHHHHHHHHHTCCSEEEE
T ss_pred             HHHHHHHhhCCCCEEecCccCCHHHHHHHHHcCCCCEEEE
Confidence            35667899899999999999 9999999999999999887

>3tqv_A Nicotinate-nucleotide pyrophosphorylase; glycosyltransferase, transferase; 2.62A {Francisella tularensis subsp}

Probab=87.92  E-value=0.48  Score=35.66  Aligned_cols=32  Identities=25%  Similarity=0.327  Sum_probs=27.9

Q ss_pred             CCeEEEeCCCCHHHHHHHHHcCCCcEEecchHH
Q 046574           22 KGTFLVAGGYDREDGNKAIAEGRADLVVYGRFF   54 (104)
Q Consensus        22 ~~pvi~~Ggi~~~~ae~~l~~g~~DlVa~gR~~   54 (104)
                      ..++.++|||+++.+.+..+.| +|+|++|...
T Consensus       242 ~v~ieaSGGIt~~~i~~~a~tG-VD~IsvGalt  273 (287)
T 3tqv_A          242 KVALEVSGNIDRNSIVAIAKTG-VDFISVGAIT  273 (287)
T ss_dssp             TCEEEEESSCCTTTHHHHHTTT-CSEEECSHHH
T ss_pred             CceEEEECCCCHHHHHHHHHcC-CCEEEEChhh
Confidence            3589999999999999998888 8999999654

>2oz8_A MLL7089 protein; structural genomics, unknown function, PSI-2, protein struct initiative; 2.48A {Mesorhizobium loti}

Probab=87.83  E-value=1.1  Score=34.21  Aligned_cols=40  Identities=15%  Similarity=0.069  Sum_probs=35.8

Q ss_pred             hHHHHHHHHc-CCeEEEeCCCCHHHHHHHHHcCCCcEEecc
Q 046574           12 HSLLLMRKAF-KGTFLVAGGYDREDGNKAIAEGRADLVVYG   51 (104)
Q Consensus        12 ~~~~~ir~~~-~~pvi~~Ggi~~~~ae~~l~~g~~DlVa~g   51 (104)
                      .....+++.+ ++||++.+.+++++++++++.|.+|+|.+.
T Consensus       233 ~~~~~l~~~~~~iPIa~dE~~~~~~~~~~i~~~~~d~v~ik  273 (389)
T 2oz8_A          233 DGLRTLRHAVTWTQINSGEYLDLQGKRLLLEAHAADILNVH  273 (389)
T ss_dssp             HHHHHHHHHCCSSEEEECTTCCHHHHHHHHHTTCCSEEEEC
T ss_pred             HHHHHHHhhCCCCCEEeCCCCCHHHHHHHHHcCCCCEEEEC
Confidence            4567799998 899999988899999999999999999986

>1tkk_A Similar to chloromuconate cycloisomerase; epimerase, enolase super family,; 2.10A {Bacillus subtilis} SCOP: c.1.11.2 d.54.1.1 PDB: 1jpm_A

Probab=87.78  E-value=0.9  Score=34.14  Aligned_cols=40  Identities=13%  Similarity=0.116  Sum_probs=35.4

Q ss_pred             hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecc
Q 046574           12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYG   51 (104)
Q Consensus        12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~g   51 (104)
                      .....+++.+++||++.+.+ ++++++++++.+.+|+|.+-
T Consensus       228 ~~~~~l~~~~~ipIa~dE~~~~~~~~~~~i~~~~~d~v~ik  268 (366)
T 1tkk_A          228 AGLKKVTDATDTPIMADESVFTPRQAFEVLQTRSADLINIK  268 (366)
T ss_dssp             HHHHHHHHHCSSCEEECTTCCSHHHHHHHHHHTCCSEEEEC
T ss_pred             HHHHHHHhhCCCCEEEcCCCCCHHHHHHHHHhCCCCEEEee
Confidence            45567888889999999999 99999999999999999883

>3vcn_A Mannonate dehydratase; enolase, magnesium binding site, enzyme function initiative, lyase; 1.45A {Caulobacter crescentus} PDB: 4gme_A* 4fi4_A 3thu_A

Probab=87.70  E-value=0.43  Score=37.16  Aligned_cols=39  Identities=18%  Similarity=0.164  Sum_probs=35.3

Q ss_pred             hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEec
Q 046574           12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVY   50 (104)
Q Consensus        12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~   50 (104)
                      .....+++.+++||++.+.+ ++++++++++.|.+|+|.+
T Consensus       268 ~~~~~l~~~~~iPIa~dE~~~~~~~~~~~i~~~a~d~v~~  307 (425)
T 3vcn_A          268 AGFRLIRQHTTTPLAVGEIFAHVWDAKQLIEEQLIDYLRA  307 (425)
T ss_dssp             THHHHHHHHCCSCEEECTTCCSGGGTHHHHHTTCCSEECC
T ss_pred             HHHHHHHhcCCCCEEeCCCcCCHHHHHHHHHcCCCCeEec
Confidence            35678999999999999999 9999999999999999887

>3v3w_A Starvation sensing protein RSPA; enolase, enzyme function initiative, EFI, lyase; HET: NHE; 1.40A {Cellvibrio japonicus} PDB: 3v4b_A* 4f4r_A 3qkf_A* 3qke_A* 3p93_A* 3ow1_A 3pk7_A* 3rgt_A* 3bsm_A

Probab=87.35  E-value=0.46  Score=36.95  Aligned_cols=39  Identities=18%  Similarity=0.204  Sum_probs=35.2

Q ss_pred             hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEec
Q 046574           12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVY   50 (104)
Q Consensus        12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~   50 (104)
                      .....+++.+++||++.+.+ ++++++++++.|.+|+|.+
T Consensus       267 ~~~~~l~~~~~iPIa~dE~~~~~~~~~~~i~~ga~d~v~~  306 (424)
T 3v3w_A          267 ESFKLIRQHTTTPLAVGEVFNSIHDCRELIQNQWIDYIRT  306 (424)
T ss_dssp             THHHHHHHHCCSCEEECTTCCSGGGTHHHHHTTCCSEECC
T ss_pred             HHHHHHHhhCCCCEEEccCcCCHHHHHHHHHcCCCCeEee
Confidence            35678999999999999999 9999999999999999887

>3sjn_A Mandelate racemase/muconate lactonizing protein; enolase, magnesium binding site, lyase; 1.90A {Shewanella pealeana}

Probab=87.18  E-value=0.57  Score=35.65  Aligned_cols=39  Identities=15%  Similarity=0.091  Sum_probs=34.8

Q ss_pred             hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEec
Q 046574           12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVY   50 (104)
Q Consensus        12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~   50 (104)
                      .....+++.+++||++.+.+ ++++++++++.|.+|+|.+
T Consensus       235 ~~~~~l~~~~~iPIa~dE~~~~~~~~~~~l~~~~~d~v~~  274 (374)
T 3sjn_A          235 ISYEKLSRQVSQKIAGGESLTTRYEFQEFITKSNADIVQP  274 (374)
T ss_dssp             HHHHHHHHHCSSEEEECTTCCHHHHHHHHHHHHCCSEECC
T ss_pred             HHHHHHHhhCCCCEEeCCCcCCHHHHHHHHHcCCCCEEEe
Confidence            45677999999999999999 8999999999999999876

>4dxk_A Mandelate racemase / muconate lactonizing enzyme protein; enolase, mandelate racemase subgroup, enzyme function initia EFI; 1.25A {Agrobacterium tumefaciens} PDB: 4dx3_A 2pod_A

Probab=87.14  E-value=0.78  Score=35.27  Aligned_cols=39  Identities=15%  Similarity=0.086  Sum_probs=35.0

Q ss_pred             hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEec
Q 046574           12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVY   50 (104)
Q Consensus        12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~   50 (104)
                      .....+++.+++||++...+ ++++++++++.|.+|+|.+
T Consensus       251 ~~~~~l~~~~~iPIa~dE~~~~~~~~~~~l~~~a~d~v~~  290 (400)
T 4dxk_A          251 SSLTRYAAVSPAPISASETLGSRWAFRDLLETGAAGVVML  290 (400)
T ss_dssp             GGHHHHHHHCSSCEEECTTCCHHHHHHHHHHTTCCCEEEE
T ss_pred             HHHHHHHHhCCCCEEecCCcCCHHHHHHHHHcCCCCEEEe
Confidence            45678999999999999999 8999999999999999877

>3r4e_A Mandelate racemase/muconate lactonizing enzyme; enolase fold, mannonate dehydratase, D-mannonate, lyase; HET: CS2; 1.65A {Novosphingobium aromaticivorans} PDB: 2qjj_A 2qjn_A* 2qjm_A*

Probab=86.99  E-value=0.41  Score=37.10  Aligned_cols=39  Identities=15%  Similarity=0.129  Sum_probs=35.0

Q ss_pred             hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEec
Q 046574           12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVY   50 (104)
Q Consensus        12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~   50 (104)
                      .....+++.+++||++.+.+ ++++++++++.|.+|+|.+
T Consensus       261 ~~~~~l~~~~~iPIa~dE~~~~~~~~~~~l~~~a~d~v~~  300 (418)
T 3r4e_A          261 EAFRLVRQHTVTPLAVGEIFNTIWDAKDLIQNQLIDYIRA  300 (418)
T ss_dssp             GGGHHHHHHCCSCEEECTTCCSGGGTHHHHHTTCCSEECC
T ss_pred             HHHHHHHhcCCCCEEEcCCcCCHHHHHHHHHcCCCCeEec
Confidence            34567999999999999999 9999999999999999887

>3bjs_A Mandelate racemase/muconate lactonizing enzyme; enolase, structural genomics, PSI-2, protein struc initiative; 2.70A {Polaromonas SP}

Probab=86.98  E-value=0.53  Score=36.55  Aligned_cols=39  Identities=10%  Similarity=-0.038  Sum_probs=34.6

Q ss_pred             hHHHHHHHHcC-CeEEEeCCC-CHHHHHHHHHcCCCcEEec
Q 046574           12 HSLLLMRKAFK-GTFLVAGGY-DREDGNKAIAEGRADLVVY   50 (104)
Q Consensus        12 ~~~~~ir~~~~-~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~   50 (104)
                      +....+++.++ +||++.+.+ +++++++++++|.+|+|.+
T Consensus       270 ~~~~~l~~~~~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~i  310 (428)
T 3bjs_A          270 ASYREVAKITPLVPIAAGENHYTRFEFGQMLDAGAVQVWQP  310 (428)
T ss_dssp             HHHHHHTTTCSSSCEEECTTCCSHHHHHHHHTTCCEEEECC
T ss_pred             HHHHHHHHhCCCCcEEcCCCcCCHHHHHHHHHhCCCCEEEe
Confidence            45567888888 999999999 9999999999999999877

>4e4u_A Mandalate racemase/muconate lactonizing enzyme; mandelate racemase, aldolase, structural genomics, biology; 1.35A {Unidentified}

Probab=86.90  E-value=0.74  Score=35.65  Aligned_cols=39  Identities=10%  Similarity=0.103  Sum_probs=34.9

Q ss_pred             hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEec
Q 046574           12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVY   50 (104)
Q Consensus        12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~   50 (104)
                      .....+++.+++||++...+ ++++++++++.|.+|+|.+
T Consensus       242 ~~~~~l~~~~~iPIa~dE~~~~~~~~~~~i~~~a~d~v~~  281 (412)
T 4e4u_A          242 EAIAQVAKHTSIPIATGERLTTKYEFHKLLQAGGASILQL  281 (412)
T ss_dssp             HHHHHHHHTCSSCEEECTTCCHHHHHHHHHHTTCCSEECC
T ss_pred             HHHHHHHhhCCCCEEecCccCCHHHHHHHHHcCCCCEEEe
Confidence            45677899999999999999 8999999999999999877

>3ldv_A Orotidine 5'-phosphate decarboxylase; structural genomics, infectious diseases; 1.77A {Vibrio cholerae o1 biovar el tor} PDB: 3uwq_A*

Probab=86.89  E-value=1.1  Score=32.89  Aligned_cols=52  Identities=23%  Similarity=0.287  Sum_probs=38.3

Q ss_pred             hHHHHHHHHcCC-eEEEeCCCCHH--H---------HHHHHHcCCCcEEecchHHhhCCcHHHHH
Q 046574           12 HSLLLMRKAFKG-TFLVAGGYDRE--D---------GNKAIAEGRADLVVYGRFFLANPDLPRRF   64 (104)
Q Consensus        12 ~~~~~ir~~~~~-pvi~~Ggi~~~--~---------ae~~l~~g~~DlVa~gR~~lanPdl~~ri   64 (104)
                      +.+..||+..+. .++++.||.++  .         ..++++.| +|++.+||+....+|-...+
T Consensus       184 ~e~~~iR~~~g~~fl~VtPGIr~qg~~~~dQ~Rv~t~~~a~~aG-ad~iVvGr~I~~a~dp~~a~  247 (255)
T 3ldv_A          184 QEASLLKQHLGREFKLVTPGIRPAGSEQGDQRRIMTPAQAIASG-SDYLVIGRPITQAAHPEVVL  247 (255)
T ss_dssp             HHHHHHHHHHCTTSEEEEECCCCTTSTTSSCSSSCCHHHHHHTT-CSEEEECHHHHTCSCHHHHH
T ss_pred             HHHHHHHHhcCCCcEEEeCCcccCcCCccceeccCCHHHHHHcC-CCEEEECHHHhCCCCHHHHH
Confidence            346678888763 67778888322  2         56788888 79999999999988765544

>1qpo_A Quinolinate acid phosphoribosyl transferase; type II prtase, de novo NAD biosynthesis, PRPP, phosphoribos transferase; 2.40A {Mycobacterium tuberculosis H37RV} SCOP: c.1.17.1 d.41.2.1 PDB: 1qpn_A 1qpq_A* 1qpr_A*

Probab=86.84  E-value=0.38  Score=35.93  Aligned_cols=33  Identities=15%  Similarity=0.224  Sum_probs=28.9

Q ss_pred             CCeEEEeCCCCHHHHHHHHHcCCCcEEecchHHh
Q 046574           22 KGTFLVAGGYDREDGNKAIAEGRADLVVYGRFFL   55 (104)
Q Consensus        22 ~~pvi~~Ggi~~~~ae~~l~~g~~DlVa~gR~~l   55 (104)
                      ..++.++|||+++.+.+..+.| +|+|++|...-
T Consensus       241 ~v~ieaSGGIt~~~i~~~a~tG-VD~isvG~l~~  273 (284)
T 1qpo_A          241 TVMLESSGGLSLQTAATYAETG-VDYLAVGALTH  273 (284)
T ss_dssp             TCEEEEESSCCTTTHHHHHHTT-CSEEECGGGTS
T ss_pred             CeEEEEECCCCHHHHHHHHhcC-CCEEEECHHHc
Confidence            3589999999999999999988 89999998443

>3ngj_A Deoxyribose-phosphate aldolase; lyase, structural genomics, structural genomics center for infectious disease, ssgcid; 1.70A {Entamoeba histolytica}

Probab=86.83  E-value=0.96  Score=33.10  Aligned_cols=41  Identities=24%  Similarity=0.270  Sum_probs=32.8

Q ss_pred             hHHHHHHHHcC--CeEEEeCCC-CHHHHHHHHHcCCCcEEecchH
Q 046574           12 HSLLLMRKAFK--GTFLVAGGY-DREDGNKAIAEGRADLVVYGRF   53 (104)
Q Consensus        12 ~~~~~ir~~~~--~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~   53 (104)
                      +..+.+|+.++  ++|-++||| +.++|.+.++.| ++-|+...+
T Consensus       188 ~dv~lmr~~vg~~v~VKasGGIrt~~da~~~i~aG-A~riGtS~~  231 (239)
T 3ngj_A          188 EDVKLMKDTVGDKALVKAAGGIRTFDDAMKMINNG-ASRIGASAG  231 (239)
T ss_dssp             HHHHHHHHHHGGGSEEEEESSCCSHHHHHHHHHTT-EEEEEESCH
T ss_pred             HHHHHHHHhhCCCceEEEeCCCCCHHHHHHHHHhc-ccceecccH
Confidence            35566887775  489999999 999999999999 787766543

>2v5b_A Triosephosphate isomerase; TIM, unfolding, monotctim, glycosome, gluconeogenesis, lipid synthesis, monomeric mutant, glycolysis, pentose shunt; 2.00A {Trypanosoma cruzi}

Probab=86.77  E-value=0.86  Score=33.41  Aligned_cols=42  Identities=14%  Similarity=0.153  Sum_probs=37.2

Q ss_pred             CeEEEeCCCCHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHh
Q 046574           23 GTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANPDLPRRFE   65 (104)
Q Consensus        23 ~pvi~~Ggi~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~   65 (104)
                      ++++..|+++++.+.+++....+|-+.+|+.-|. .+|..-+.
T Consensus       200 vrIlYGGSV~~~N~~~l~~~~diDG~LVGgASL~-~~F~~Ii~  241 (244)
T 2v5b_A          200 LRILYGGSVTAKNARTLYQMRDINGFLVGGASLK-PEFVEIIE  241 (244)
T ss_dssp             CEEEECSCCCHHHHHHHHTSTTCCEEEESGGGSS-TTHHHHHH
T ss_pred             ccEEEcCCCCHhHHHHHhcCCCCCeeeechHHHH-HHHHHHHH
Confidence            5788888889999999999999999999999999 88976654

>3tj4_A Mandelate racemase; enolase, dehydratase, enzyme function initiative, EFI, lyase; 1.50A {Agrobacterium tumefaciens} PDB: 4h19_A*

Probab=86.58  E-value=1.2  Score=33.88  Aligned_cols=39  Identities=10%  Similarity=-0.026  Sum_probs=34.8

Q ss_pred             hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEec
Q 046574           12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVY   50 (104)
Q Consensus        12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~   50 (104)
                      .....+++.+++||++...+ ++++++++++.|.+|+|.+
T Consensus       238 ~~~~~l~~~~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~~  277 (372)
T 3tj4_A          238 TSHARLARNTSIPIALGEQLYTVDAFRSFIDAGAVAYVQP  277 (372)
T ss_dssp             HHHHHHHHHCSSCEEECTTCCSHHHHHHHHHTTCCSEECC
T ss_pred             HHHHHHHhhcCCCEEeCCCccCHHHHHHHHHcCCCCEEEe
Confidence            45567899999999999999 9999999999999999877

>3qja_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, T structural genomics consortium, TBSGC, lyase; 1.29A {Mycobacterium tuberculosis} PDB: 3t40_A* 3t44_A* 3t55_A* 3t78_A* 4fb7_A*

Probab=86.49  E-value=1.1  Score=32.92  Aligned_cols=49  Identities=20%  Similarity=0.072  Sum_probs=39.5

Q ss_pred             hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHH
Q 046574           12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLP   61 (104)
Q Consensus        12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~   61 (104)
                      +.++.+|+.++.||+.-+.+ ++.+.+++...| +|.|.++-..+.+.++.
T Consensus       103 ~~l~~ir~~v~lPvl~kdfiid~~qv~~A~~~G-AD~VlLi~a~l~~~~l~  152 (272)
T 3qja_A          103 DDLDAVRASVSIPVLRKDFVVQPYQIHEARAHG-ADMLLLIVAALEQSVLV  152 (272)
T ss_dssp             HHHHHHHHHCSSCEEEESCCCSHHHHHHHHHTT-CSEEEEEGGGSCHHHHH
T ss_pred             HHHHHHHHhCCCCEEECccccCHHHHHHHHHcC-CCEEEEecccCCHHHHH
Confidence            35667888899999988777 999999999888 79999987777655554

>3krs_A Triosephosphate isomerase; ssgcid, SBRI, emerald biostructures, university of washingto niaid, I structural genomics; 1.55A {Cryptosporidium parvum iowa II}

Probab=86.33  E-value=0.67  Score=34.61  Aligned_cols=56  Identities=16%  Similarity=0.239  Sum_probs=43.7

Q ss_pred             CcchHHHHHHHHc----------CCeEEEeCCCCHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHh
Q 046574            9 ECPHSLLLMRKAF----------KGTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANPDLPRRFE   65 (104)
Q Consensus         9 ~~~~~~~~ir~~~----------~~pvi~~Ggi~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~   65 (104)
                      +.++.-..||+.+          +++++..|+++++.+.+++..-.+|-+.+|+.-|. |+|..-+.
T Consensus       203 ~aqevh~~IR~~l~~~~~~~~a~~vrILYGGSV~~~N~~el~~~~diDG~LVGgASL~-~~F~~Ii~  268 (271)
T 3krs_A          203 QAQEAHAFIREYVTRMYNPQVSSNLRIIYGGSVTPDNCNELIKCADIDGFLVGGASLK-PTFAKIIE  268 (271)
T ss_dssp             HHHHHHHHHHHHHHHHSCHHHHHHCCEEECSCCCTTTHHHHHHSTTCCEEEESGGGGS-TTHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcChhhcCCccEEEcCCcCHHHHHHHhcCCCCCEEEeeHHhhh-HHHHHHHH
Confidence            3344445566652          25788888889999999999988999999999998 89987654

>3oa3_A Aldolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, pathogenic fungus; 1.60A {Coccidioides immitis}

Probab=85.91  E-value=1.7  Score=32.73  Aligned_cols=40  Identities=23%  Similarity=0.221  Sum_probs=31.3

Q ss_pred             HHHHHHHHc-----CCeEEEeCCC-CHHHHHHHHHcCCCcEEecchH
Q 046574           13 SLLLMRKAF-----KGTFLVAGGY-DREDGNKAIAEGRADLVVYGRF   53 (104)
Q Consensus        13 ~~~~ir~~~-----~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~   53 (104)
                      ..+.+++.+     +++|.++||| +.++|.+.|+.| ++-|+....
T Consensus       220 dv~lmr~~v~~~g~~v~VKAAGGIrt~edAl~mi~aG-A~RiGtS~g  265 (288)
T 3oa3_A          220 NVSLMSAVCDSLQSETRVKASGGIRTIEDCVKMVRAG-AERLGASAG  265 (288)
T ss_dssp             HHHHHHHHHHHSSSCCEEEEESSCCSHHHHHHHHHTT-CSEEEESCH
T ss_pred             HHHHHHHHHHHhCCCceEEEeCCCCCHHHHHHHHHcC-CceeehhhH
Confidence            445666665     3589999999 999999999999 786666544

>3tji_A Mandelate racemase/muconate lactonizing enzyme, N domain protein; enolase, dehydratase, enzyme function initiative, EFI, lyase; 1.80A {Enterobacter SP}

Probab=85.90  E-value=0.62  Score=36.25  Aligned_cols=39  Identities=13%  Similarity=0.113  Sum_probs=35.0

Q ss_pred             hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEec
Q 046574           12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVY   50 (104)
Q Consensus        12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~   50 (104)
                      .....+++.+++||++...+ ++++++++++.|.+|+|.+
T Consensus       263 ~~~~~l~~~~~iPIa~dE~~~~~~~~~~ll~~ga~d~v~~  302 (422)
T 3tji_A          263 AWLEQVRQQSCVPLALGELFNNPAEWHDLIVNRRIDFIRC  302 (422)
T ss_dssp             GGHHHHHHHCCCCEEECTTCCSGGGTHHHHHTTCCSEECC
T ss_pred             HHHHHHHhhCCCCEEEeCCcCCHHHHHHHHhcCCCCEEec
Confidence            35668999999999999999 9999999999999999887

>3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} SCOP: c.1.2.0

Probab=85.85  E-value=0.97  Score=32.40  Aligned_cols=57  Identities=14%  Similarity=0.094  Sum_probs=40.5

Q ss_pred             hHHHHHHHHcCCeEEEe-----CC---C---CHHHHHHHHHcCCCcEEecchHHhhCCc----HHHHHhh-CCC
Q 046574           12 HSLLLMRKAFKGTFLVA-----GG---Y---DREDGNKAIAEGRADLVVYGRFFLANPD----LPRRFEF-NAP   69 (104)
Q Consensus        12 ~~~~~ir~~~~~pvi~~-----Gg---i---~~~~ae~~l~~g~~DlVa~gR~~lanPd----l~~ri~~-g~~   69 (104)
                      +..+.+|+.++.||+..     |+   +   +.++++++++.| +|+|.+.-....+|+    ++++++. |..
T Consensus        59 ~~i~~ir~~v~~Pvig~~k~d~~~~~~~I~~~~~~i~~~~~~G-ad~V~l~~~~~~~p~~l~~~i~~~~~~g~~  131 (232)
T 3igs_A           59 DNLRMTRSLVSVPIIGIIKRDLDESPVRITPFLDDVDALAQAG-AAIIAVDGTARQRPVAVEALLARIHHHHLL  131 (232)
T ss_dssp             HHHHHHHTTCCSCEEEECBCCCSSCCCCBSCSHHHHHHHHHHT-CSEEEEECCSSCCSSCHHHHHHHHHHTTCE
T ss_pred             HHHHHHHHhcCCCEEEEEeecCCCcceEeCccHHHHHHHHHcC-CCEEEECccccCCHHHHHHHHHHHHHCCCE
Confidence            45678899999998741     33   3   457899999999 799998776666775    5555554 443

>3ddm_A Putative mandelate racemase/muconate lactonizing enzyme; structural genomics, NYSGXRC, target 9284B, enolase family, PSI-2; 2.60A {Bordetella bronchiseptica}

Probab=85.85  E-value=1.1  Score=34.49  Aligned_cols=39  Identities=8%  Similarity=-0.094  Sum_probs=34.9

Q ss_pred             hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEec
Q 046574           12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVY   50 (104)
Q Consensus        12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~   50 (104)
                      .....+++.+++||++...+ ++++++++++.|.+|+|.+
T Consensus       241 ~~~~~l~~~~~iPIa~dE~~~~~~~~~~~i~~~a~d~v~~  280 (392)
T 3ddm_A          241 AEWAELAQAAPMPLAGGENIAGVAAFETALAARSLRVMQP  280 (392)
T ss_dssp             HHHHHHHHHCSSCEEECTTCCSHHHHHHHHHHTCEEEECC
T ss_pred             HHHHHHHHhcCCCEEeCCCCCCHHHHHHHHHcCCCCEEEe
Confidence            45667899999999999999 9999999999999999877

>1tzz_A Hypothetical protein L1841; structural genomics, mandelate racemase like fold, nysgxrc target T1523, PSI, protein structure initiative; 1.86A {Bradyrhizobium japonicum} SCOP: c.1.11.2 d.54.1.1 PDB: 2dw7_A* 2dw6_A*

Probab=85.68  E-value=0.81  Score=34.87  Aligned_cols=39  Identities=10%  Similarity=0.244  Sum_probs=34.5

Q ss_pred             hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcC----CCcEEec
Q 046574           12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEG----RADLVVY   50 (104)
Q Consensus        12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g----~~DlVa~   50 (104)
                      .....+++.+++||++.+.+ ++++++++++.|    .+|+|.+
T Consensus       251 ~~~~~l~~~~~iPIa~dE~~~~~~~~~~~i~~~~~~~~~d~v~i  294 (392)
T 1tzz_A          251 ALQAALAEFYPGPMATGENLFSHQDARNLLRYGGMRPDRDWLQF  294 (392)
T ss_dssp             HHHHHHTTTCCSCEEECTTCCSHHHHHHHHHHSCCCTTTCEECC
T ss_pred             HHHHHHHhhCCCCEEECCCCCCHHHHHHHHHcCCCccCCcEEEE
Confidence            45567888888999999999 999999999999    9999887

>2hxt_A L-fuconate dehydratase; enolase superfamily, D-erythromohydr unknown function; HET: EHM; 1.70A {Xanthomonas campestris PV} PDB: 1yey_A 2hxu_A* 2hne_A

Probab=85.56  E-value=1.2  Score=34.63  Aligned_cols=39  Identities=13%  Similarity=0.099  Sum_probs=34.2

Q ss_pred             hHHHHHHHHc-CCeEEEeCCC-CHHHHHHHHHcCCCcEEec
Q 046574           12 HSLLLMRKAF-KGTFLVAGGY-DREDGNKAIAEGRADLVVY   50 (104)
Q Consensus        12 ~~~~~ir~~~-~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~   50 (104)
                      .....+++.+ ++||++.+.+ ++++++++++.|.+|+|.+
T Consensus       283 ~~~~~l~~~~~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~i  323 (441)
T 2hxt_A          283 LGHAAIRQGITPVPVSTGEHTQNRVVFKQLLQAGAVDLIQI  323 (441)
T ss_dssp             HHHHHHHHHHTTSCEEECTTCCSHHHHHHHHHHTCCSEECC
T ss_pred             HHHHHHHhhCCCCCEEEeCCcCCHHHHHHHHHcCCCCEEEe
Confidence            4566788887 5899999999 9999999999999999877

>3qst_A Triosephosphate isomerase, putative; TIM barrel; 1.75A {Trichomonas vaginalis} PDB: 3qsr_A

Probab=85.53  E-value=0.73  Score=34.05  Aligned_cols=42  Identities=17%  Similarity=0.101  Sum_probs=36.9

Q ss_pred             CeEEEeCCCCHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHh
Q 046574           23 GTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANPDLPRRFE   65 (104)
Q Consensus        23 ~pvi~~Ggi~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~   65 (104)
                      ++++..|+++++.+.+++..-.+|-+.+|+.-|. |+|..-+.
T Consensus       208 vrIlYGGSV~~~N~~~l~~~~diDG~LVGgASL~-~~F~~Ii~  249 (255)
T 3qst_A          208 VRILYGGSVKPNNCNELAACPDVDGFLVGGASLE-AGFINIVN  249 (255)
T ss_dssp             CEEEECSCCCTTTHHHHHHSTTCCEEEECGGGGS-TTHHHHHG
T ss_pred             ccEEEcCCcCHhHHHHHhcCCCCCEEEeeHHHhh-HHHHHHHH
Confidence            5788888889999999999988999999999998 89987654

>3q45_A Mandelate racemase/muconate lactonizing enzyme FA possible chloromuconate cycloisomerase...; (beta/alpha)8-barrel; 3.00A {Cytophaga hutchinsonii} PDB: 3q4d_A

Probab=85.52  E-value=1.3  Score=33.62  Aligned_cols=39  Identities=15%  Similarity=0.155  Sum_probs=34.5

Q ss_pred             hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEec
Q 046574           12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVY   50 (104)
Q Consensus        12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~   50 (104)
                      .....+++..++||++...+ ++++++++++.+.+|+|.+
T Consensus       225 ~~~~~l~~~~~iPIa~dE~~~~~~~~~~~~~~~~~d~v~~  264 (368)
T 3q45_A          225 TALPKIRQACRIPIMADESCCNSFDAERLIQIQACDSFNL  264 (368)
T ss_dssp             GGHHHHHHTCSSCEEESTTCCSHHHHHHHHHTTCCSEEEE
T ss_pred             HHHHHHHhhCCCCEEEcCCcCCHHHHHHHHHcCCCCeEEe
Confidence            34667899899999999998 9999999999999999866

>1p4c_A L(+)-mandelate dehydrogenase; TIM barrel, hydroxy acid oxidizing enzyme, oxidoreductase; HET: FMN MES; 1.35A {Pseudomonas putida} SCOP: c.1.4.1 PDB: 1huv_A* 1p5b_A* 3giy_A* 2a7p_A* 2a85_A* 2a7n_A*

Probab=85.51  E-value=1.2  Score=34.10  Aligned_cols=38  Identities=37%  Similarity=0.546  Sum_probs=32.0

Q ss_pred             hHHHHHHHHcCCeEEEeCCCCHHHHHHHHHcCCCcEEec
Q 046574           12 HSLLLMRKAFKGTFLVAGGYDREDGNKAIAEGRADLVVY   50 (104)
Q Consensus        12 ~~~~~ir~~~~~pvi~~Ggi~~~~ae~~l~~g~~DlVa~   50 (104)
                      +..+.+++.+++||++-|-.+++.|+.+++.| +|.|.+
T Consensus       215 ~~i~~i~~~~~~Pv~vkgv~t~e~a~~a~~aG-ad~I~v  252 (380)
T 1p4c_A          215 EALRWLRDLWPHKLLVKGLLSAEDADRCIAEG-ADGVIL  252 (380)
T ss_dssp             HHHHHHHHHCCSEEEEEEECCHHHHHHHHHTT-CSEEEE
T ss_pred             HHHHHHHHhcCCCEEEEecCcHHHHHHHHHcC-CCEEEE
Confidence            46677889999999986544999999999998 799887

>1r0m_A N-acylamino acid racemase; isomerase; 1.30A {Deinococcus radiodurans} SCOP: c.1.11.2 d.54.1.1 PDB: 1xpy_A* 1xs2_A 2ggj_A 2ggi_A 2ggh_A* 2ggg_A* 2fkp_A

Probab=85.29  E-value=1.4  Score=33.27  Aligned_cols=39  Identities=13%  Similarity=0.198  Sum_probs=34.8

Q ss_pred             hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEec
Q 046574           12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVY   50 (104)
Q Consensus        12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~   50 (104)
                      .....+++.+++||++...+ ++++++++++.+.+|+|.+
T Consensus       229 ~~~~~l~~~~~ipIa~dE~~~~~~~~~~~i~~~~~d~v~i  268 (375)
T 1r0m_A          229 VDHAELARRIRTPLCLDESVASASDARKALALGAGGVINL  268 (375)
T ss_dssp             HHHHHHHHHCSSCEEESTTCCSHHHHHHHHHHTSCSEEEE
T ss_pred             HHHHHHHHhCCCCEEecCccCCHHHHHHHHHhCCCCEEEE
Confidence            45667889999999999999 9999999999999999877

>3my9_A Muconate cycloisomerase; structural genomics, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics, nysgx; 2.20A {Azorhizobium caulinodans}

Probab=85.27  E-value=1.4  Score=33.43  Aligned_cols=39  Identities=15%  Similarity=0.147  Sum_probs=34.7

Q ss_pred             hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEec
Q 046574           12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVY   50 (104)
Q Consensus        12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~   50 (104)
                      .....+++.+++||++...+ ++++++++++.|.+|+|.+
T Consensus       232 ~~~~~l~~~~~ipIa~dE~~~~~~~~~~~i~~~~~d~v~~  271 (377)
T 3my9_A          232 DAMAGFAAALDTPILADESCFDAVDLMEVVRRQAADAISV  271 (377)
T ss_dssp             HHHHHHHHHCSSCEEESTTCSSHHHHHHHHHHTCCSEEEC
T ss_pred             HHHHHHHHhCCCCEEECCccCCHHHHHHHHHcCCCCEEEe
Confidence            45667899999999999999 9999999999999999876

>1o5x_A TIM, triosephosphate isomerase; 2- phosphoglycerate, META-phosphate, catalytic LOOP6; HET: 2PG; 1.10A {Plasmodium falciparum} SCOP: c.1.1.1 PDB: 1lzo_A 1m7o_A* 1m7p_A* 1lyx_A* 1ydv_A 2vfi_A* 3psw_A 3psv_A 3pwa_A 2vfh_A* 2vff_A 2vfg_A* 1vga_A 1woa_A* 1wob_A 3pvf_A 3py2_A 2vfd_A 2vfe_A*

Probab=85.25  E-value=0.57  Score=34.50  Aligned_cols=56  Identities=16%  Similarity=0.148  Sum_probs=43.7

Q ss_pred             CcchHHHHHHHHc----------CCeEEEeCCCCHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHh
Q 046574            9 ECPHSLLLMRKAF----------KGTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANPDLPRRFE   65 (104)
Q Consensus         9 ~~~~~~~~ir~~~----------~~pvi~~Ggi~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~   65 (104)
                      ++++....||+.+          +++++..|+++++.+.+++..-.+|-+.+|+.-|. .||..-+.
T Consensus       180 ~a~evh~~IR~~l~~~~~~~~a~~vrIlYGGSV~~~N~~~l~~~~diDG~LVGgAsL~-~~F~~ii~  245 (248)
T 1o5x_A          180 QAQLVHKEIRKIVKDTCGEKQANQIRILYGGSVNTENCSSLIQQEDIDGFLVGNASLK-ESFVDIIK  245 (248)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHSEEEECSCCCTTTHHHHHTSTTCCEEEECGGGGS-TTHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCccccCcceEEEcCCCCHHHHHHHHcCCCCCeeEeeHHHHH-HHHHHHHH
Confidence            3344555666652          25788888889999999999888999999999999 88977654

>1chr_A Chloromuconate cycloisomerase; 3.00A {Ralstonia eutropha} PDB: 2chr_A

Probab=85.14  E-value=1.5  Score=33.19  Aligned_cols=39  Identities=5%  Similarity=0.050  Sum_probs=34.6

Q ss_pred             hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEec
Q 046574           12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVY   50 (104)
Q Consensus        12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~   50 (104)
                      .....+++.+++||++...+ ++++++++++.+.+|+|.+
T Consensus       229 ~~~~~l~~~~~iPia~dE~~~~~~~~~~~~~~~~~d~v~~  268 (370)
T 1chr_A          229 QALRRLSDNNRVAIMADESLSTLASAFDLARDRSVDVFSL  268 (370)
T ss_dssp             HHHHHHHHHSCSEEEESSSCCSHHHHHHHHTTTSCSEEEE
T ss_pred             HHHHHHHhhCCCCEEeCCCcCCHHHHHHHHHcCCCCEEEE
Confidence            35677999999999999998 9999999999999999876

>4dwd_A Mandelate racemase/muconate lactonizing enzyme, C domain protein; structural genomics, EFI, enzyme function initiative, metal protein; HET: MSE; 1.50A {Paracoccus denitrificans} PDB: 3n4e_A*

Probab=84.94  E-value=1.2  Score=34.17  Aligned_cols=38  Identities=11%  Similarity=-0.011  Sum_probs=34.0

Q ss_pred             hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEec
Q 046574           12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVY   50 (104)
Q Consensus        12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~   50 (104)
                      .....+++.+++||++...+ ++++++++++.| +|+|.+
T Consensus       232 ~~~~~l~~~~~iPIa~dE~~~~~~~~~~~i~~~-~d~v~~  270 (393)
T 4dwd_A          232 GAMGEVAQRLDITVSAGEQTYTLQALKDLILSG-VRMVQP  270 (393)
T ss_dssp             HHHHHHHHHCSSEEEBCTTCCSHHHHHHHHHHT-CCEECC
T ss_pred             HHHHHHHhhCCCCEEecCCcCCHHHHHHHHHcC-CCEEEe
Confidence            45667899999999999999 999999999999 999887

>3gnn_A Nicotinate-nucleotide pyrophosphorylase; decode biostructures, ssgcid, niaid, SBRI, UWPPG, glycosyltransferase, transferase, structural genomics; 2.25A {Burkholderia pseudomallei}

Probab=84.91  E-value=0.95  Score=34.17  Aligned_cols=29  Identities=21%  Similarity=0.341  Sum_probs=26.5

Q ss_pred             CeEEEeCCCCHHHHHHHHHcCCCcEEecch
Q 046574           23 GTFLVAGGYDREDGNKAIAEGRADLVVYGR   52 (104)
Q Consensus        23 ~pvi~~Ggi~~~~ae~~l~~g~~DlVa~gR   52 (104)
                      .++.++|||+++.+.++.+.| +|+|++|.
T Consensus       254 v~ieaSGGI~~~~i~~~a~tG-VD~isvG~  282 (298)
T 3gnn_A          254 AVLEVSGGVNFDTVRAIAETG-VDRISIGA  282 (298)
T ss_dssp             EEEEEESSCSTTTHHHHHHTT-CSEEECGG
T ss_pred             CeEEEEcCCCHHHHHHHHHcC-CCEEEECC
Confidence            479999999999999999888 79999997

>2zc8_A N-acylamino acid racemase; octamer, TIM beta/alpha-barrel, metal-binding, metal binding; 1.95A {Thermus thermophilus}

Probab=84.89  E-value=1.5  Score=32.91  Aligned_cols=39  Identities=13%  Similarity=0.157  Sum_probs=34.7

Q ss_pred             hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEec
Q 046574           12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVY   50 (104)
Q Consensus        12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~   50 (104)
                      .....+++.+++||++...+ ++++++++++.|.+|+|.+
T Consensus       222 ~~~~~l~~~~~ipIa~dE~~~~~~~~~~~i~~~~~d~v~i  261 (369)
T 2zc8_A          222 LDHAKLQRELSTPICLDESLTGAEKARKAIELGAGRVFNV  261 (369)
T ss_dssp             HHHHHHHHHCSSCEEESTTCCSHHHHHHHHHHTCCSEEEE
T ss_pred             HHHHHHHhhCCCCEEEcCccCCHHHHHHHHHhCCCCEEEE
Confidence            45667888889999999998 9999999999999999877

>3r2g_A Inosine 5'-monophosphate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.94A {Legionella pneumophila subsp}

Probab=84.69  E-value=0.97  Score=34.84  Aligned_cols=38  Identities=18%  Similarity=0.330  Sum_probs=29.9

Q ss_pred             hHHHHHHHHc-CCeEEEeCCC-CHHHHHHHHHcCCCcEEecc
Q 046574           12 HSLLLMRKAF-KGTFLVAGGY-DREDGNKAIAEGRADLVVYG   51 (104)
Q Consensus        12 ~~~~~ir~~~-~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~g   51 (104)
                      +..+.+|+.+ +.|||+ |++ |++.|+.+++.| +|+|.+|
T Consensus       130 e~I~~ir~~~~~~~Vi~-G~V~T~e~A~~a~~aG-aD~I~Vg  169 (361)
T 3r2g_A          130 KTLKSLRQLLGSRCIMA-GNVATYAGADYLASCG-ADIIKAG  169 (361)
T ss_dssp             HHHHHHHHHHTTCEEEE-EEECSHHHHHHHHHTT-CSEEEEC
T ss_pred             HHHHHHHHhcCCCeEEE-cCcCCHHHHHHHHHcC-CCEEEEc
Confidence            3567788888 457776 556 999999999998 7998863

>3sgz_A Hydroxyacid oxidase 2; flavoprotein, homology, INH oxidoreductase-oxidoreductase inhibitor complex; HET: FMN HO6; 1.35A {Rattus norvegicus} PDB: 1tb3_A*

Probab=84.50  E-value=1.4  Score=33.95  Aligned_cols=38  Identities=18%  Similarity=0.285  Sum_probs=33.0

Q ss_pred             hHHHHHHHHcCCeEEEeCCCCHHHHHHHHHcCCCcEEec
Q 046574           12 HSLLLMRKAFKGTFLVAGGYDREDGNKAIAEGRADLVVY   50 (104)
Q Consensus        12 ~~~~~ir~~~~~pvi~~Ggi~~~~ae~~l~~g~~DlVa~   50 (104)
                      +..+.+|+.+++||++-|-.+++.|+.+++.| +|.|.+
T Consensus       207 ~~i~~lr~~~~~PvivK~v~~~e~A~~a~~~G-aD~I~v  244 (352)
T 3sgz_A          207 NDLSLLQSITRLPIILKGILTKEDAELAMKHN-VQGIVV  244 (352)
T ss_dssp             HHHHHHHHHCCSCEEEEEECSHHHHHHHHHTT-CSEEEE
T ss_pred             HHHHHHHHhcCCCEEEEecCcHHHHHHHHHcC-CCEEEE
Confidence            35778999999999998777999999999998 798876

>3l0g_A Nicotinate-nucleotide pyrophosphorylase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.05A {Ehrlichia chaffeensis}

Probab=84.42  E-value=0.93  Score=34.34  Aligned_cols=30  Identities=17%  Similarity=0.258  Sum_probs=26.5

Q ss_pred             CeEEEeCCCCHHHHHHHHHcCCCcEEecchH
Q 046574           23 GTFLVAGGYDREDGNKAIAEGRADLVVYGRF   53 (104)
Q Consensus        23 ~pvi~~Ggi~~~~ae~~l~~g~~DlVa~gR~   53 (104)
                      ..+.++|||+++.+.+..+.| +|+|++|..
T Consensus       252 v~leaSGGIt~~~i~~~A~tG-VD~IsvGal  281 (300)
T 3l0g_A          252 SVLEVSGCVNIRNVRNIALTG-VDYISIGCI  281 (300)
T ss_dssp             SEEEEESSCCTTTHHHHHTTT-CSEEECGGG
T ss_pred             eEEEEECCCCHHHHHHHHHcC-CCEEEeCcc
Confidence            479999999999999998888 899999953

>2j27_A Triosephosphate isomerase glycosomal; TIM, 2PG, LOOP7, glycosome, TIM-barrel, gluconeogenesis, lipid synthesis, atomic resolution; 1.15A {Trypanosoma brucei brucei} PDB: 2j24_A 1kv5_A 1tpe_A 1tsi_A* 3tim_A 2v2c_A 2v0t_A 1tri_A 1tti_A 1mss_A 1ttj_A* 2wsq_A 2y70_A 2y6z_A* 1ml1_A 2wsr_A 3q37_A 2v2h_A 2v2d_A 1dkw_A ...

Probab=84.35  E-value=0.78  Score=33.79  Aligned_cols=56  Identities=13%  Similarity=0.191  Sum_probs=44.1

Q ss_pred             CcchHHHHHHHHc----------CCeEEEeCCCCHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHh
Q 046574            9 ECPHSLLLMRKAF----------KGTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANPDLPRRFE   65 (104)
Q Consensus         9 ~~~~~~~~ir~~~----------~~pvi~~Ggi~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~   65 (104)
                      ++++....||+.+          +++++..|+++++.+.+++..-.+|-+.+|+.-|. .+|..-+.
T Consensus       182 ~a~evh~~IR~~l~~~~~~~~a~~vrIlYGGSV~~~N~~~l~~~~diDG~LVGgAsL~-~~F~~ii~  247 (250)
T 2j27_A          182 QAQEAHALIRSWVSSKIGADVAGELRILYGGSVNGKNARTLYQQRDVNGFLVGGASLK-PEFVDIIK  247 (250)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHCCEEEESSCCTTTHHHHHTSTTCCEEEESGGGGS-TTHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcChhhcccccEEEcCCCCHHHHHHHHcCCCCCeeeeehHHHH-HHHHHHHH
Confidence            3444555666642          25788889999999999998888999999999999 88977654

>3t6c_A RSPA, putative MAND family dehydratase; enolase, mannonate dehydratase related protein, enzyme funct intitiative, lyase, hydro-lyases; HET: GCO; 1.60A {Pantoea ananatis} PDB: 3tw9_A 3twa_A 3twb_A*

Probab=84.34  E-value=1.6  Score=34.12  Aligned_cols=39  Identities=10%  Similarity=0.116  Sum_probs=34.8

Q ss_pred             hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEec
Q 046574           12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVY   50 (104)
Q Consensus        12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~   50 (104)
                      .....+++.+++||++...+ ++++++++++.|.+|+|.+
T Consensus       281 ~~~~~l~~~~~iPIa~dE~~~~~~~~~~~i~~~a~d~v~~  320 (440)
T 3t6c_A          281 EWLKMLRQQSSTPIAMGELFVNVNEWKPLIDNKLIDYIRC  320 (440)
T ss_dssp             GGHHHHHHHCCSCEEECTTCCSHHHHHHHHHTTCCSEECC
T ss_pred             HHHHHHHhhcCCCEEeCcccCCHHHHHHHHHcCCccceee
Confidence            35667999999999999999 9999999999999999877

>1ub3_A Aldolase protein; schiff base, deoxyribose phosphate, carbinolamine, structural genomics, riken structural genomics/proteomics initiative; HET: HPD; 1.40A {Thermus thermophilus} SCOP: c.1.10.1 PDB: 1j2w_A*

Probab=84.27  E-value=2.2  Score=30.58  Aligned_cols=43  Identities=23%  Similarity=0.350  Sum_probs=33.1

Q ss_pred             hHHHHHHHHcC--CeEEEeCCC-CHHHHHHHHHcCCCc--EEecchHHh
Q 046574           12 HSLLLMRKAFK--GTFLVAGGY-DREDGNKAIAEGRAD--LVVYGRFFL   55 (104)
Q Consensus        12 ~~~~~ir~~~~--~pvi~~Ggi-~~~~ae~~l~~g~~D--lVa~gR~~l   55 (104)
                      +..+.+++.++  .||-++||+ +.+++.+.++.| ++  -++.||..+
T Consensus       164 ~dv~~m~~~vg~~v~VkaaGGirt~~~al~~i~aG-a~RiG~S~g~~I~  211 (220)
T 1ub3_A          164 EDVALLVRVAQGRAQVKAAGGIRDRETALRMLKAG-ASRLGTSSGVALV  211 (220)
T ss_dssp             HHHHHHHHHHTTSSEEEEESSCCSHHHHHHHHHTT-CSEEEETTHHHHH
T ss_pred             HHHHHHHHhhCCCCeEEEECCCCCHHHHHHHHHCC-CcccchhHHHHHH
Confidence            35567777664  599999999 999999999988 68  555566544

>2nli_A Lactate oxidase; flavoenzyme, FMN, D-lactate, oxidoreducta; HET: FMN; 1.59A {Aerococcus viridans} PDB: 2zfa_A* 2du2_A* 2e77_A* 2j6x_A*

Probab=83.95  E-value=1.4  Score=33.66  Aligned_cols=38  Identities=21%  Similarity=0.139  Sum_probs=32.6

Q ss_pred             hHHHHHHHHcCCeEEEeCCCCHHHHHHHHHcCCCcEEec
Q 046574           12 HSLLLMRKAFKGTFLVAGGYDREDGNKAIAEGRADLVVY   50 (104)
Q Consensus        12 ~~~~~ir~~~~~pvi~~Ggi~~~~ae~~l~~g~~DlVa~   50 (104)
                      +..+.+|+.+++||++-|-.+++.|+.+++.| +|.|.+
T Consensus       219 ~~i~~lr~~~~~PvivK~v~~~e~a~~a~~~G-ad~I~v  256 (368)
T 2nli_A          219 RDIEEIAGHSGLPVFVKGIQHPEDADMAIKRG-ASGIWV  256 (368)
T ss_dssp             HHHHHHHHHSSSCEEEEEECSHHHHHHHHHTT-CSEEEE
T ss_pred             HHHHHHHHHcCCCEEEEcCCCHHHHHHHHHcC-CCEEEE
Confidence            35678999999999988766999999999998 798877

>1n7k_A Deoxyribose-phosphate aldolase; A.pernix, tetramer, alpha-beta TIM barrel, riken S genomics/proteomics initiative, RSGI, structural genomics,; 2.00A {Aeropyrum pernix} SCOP: c.1.10.1

Probab=83.77  E-value=2.4  Score=30.72  Aligned_cols=42  Identities=24%  Similarity=0.207  Sum_probs=33.0

Q ss_pred             HHHH--HHHHcCCeEEEeCCC-CHHHHHHHHHcCCCc--EEecchHHh
Q 046574           13 SLLL--MRKAFKGTFLVAGGY-DREDGNKAIAEGRAD--LVVYGRFFL   55 (104)
Q Consensus        13 ~~~~--ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~D--lVa~gR~~l   55 (104)
                      ..+.  +++.++.||-++||+ +.+++.+.++.| ++  -++.||..+
T Consensus       181 dv~l~~m~~~v~v~VKaaGGirt~~~al~~i~aG-a~RiG~S~g~~I~  227 (234)
T 1n7k_A          181 VFRLASLAKPLGMGVKASGGIRSGIDAVLAVGAG-ADIIGTSSAVKVL  227 (234)
T ss_dssp             HHHHHHHHGGGTCEEEEESSCCSHHHHHHHHHTT-CSEEEETTHHHHH
T ss_pred             HHHHHHHHHHHCCCEEEecCCCCHHHHHHHHHcC-ccccchHHHHHHH
Confidence            3455  888877899999999 999999999988 68  455555544

>3ugv_A Enolase; enzyme function initiative, EFI, lyase; 2.30A {Alpha proteobacterium BAL199}

Probab=83.37  E-value=2  Score=32.93  Aligned_cols=39  Identities=18%  Similarity=0.400  Sum_probs=34.7

Q ss_pred             hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEec
Q 046574           12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVY   50 (104)
Q Consensus        12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~   50 (104)
                      .....+++.+++||++...+ ++.+++++++.|.+|+|.+
T Consensus       260 ~~~~~l~~~~~iPIa~dE~~~~~~~~~~~i~~~a~d~v~i  299 (390)
T 3ugv_A          260 DGYAQLRHDLKTPLMIGENFYGPREMHQALQAGACDLVMP  299 (390)
T ss_dssp             HHHHHHHHHCSSCEEECTTCCSHHHHHHHHHTTCCSEECC
T ss_pred             HHHHHHHHhcCCCEEeCCCcCCHHHHHHHHHcCCCCEEEe
Confidence            35567899999999999999 9999999999999999876

>3r12_A Deoxyribose-phosphate aldolase; TIM beta/alpha-barrel, structural genomics, joint center for structural genomics, JCSG; HET: MSE CIT; 1.75A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1o0y_A* 3r13_A*

Probab=83.24  E-value=2.6  Score=31.18  Aligned_cols=43  Identities=28%  Similarity=0.262  Sum_probs=33.4

Q ss_pred             hHHHHHHHHcC--CeEEEeCCC-CHHHHHHHHHcCCCcEEec--chHHh
Q 046574           12 HSLLLMRKAFK--GTFLVAGGY-DREDGNKAIAEGRADLVVY--GRFFL   55 (104)
Q Consensus        12 ~~~~~ir~~~~--~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~--gR~~l   55 (104)
                      +..+.+++.++  .+|-++||| |.++|.+.++.| ++-|+.  |+..+
T Consensus       204 edV~lm~~~vg~~v~VKaAGGIrt~~~al~mi~aG-A~RiGtS~g~~I~  251 (260)
T 3r12_A          204 EDVHLMKWIVGDEMGVKASGGIRTFEDAVKMIMYG-ADRIGTSSGVKIV  251 (260)
T ss_dssp             HHHHHHHHHHCTTSEEEEESSCCSHHHHHHHHHTT-CSEEEESCHHHHH
T ss_pred             HHHHHHHHHhCCCceEEEeCCCCCHHHHHHHHHcC-CceeecchHHHHH
Confidence            35567888775  489999999 999999999999 785555  44444

>1gox_A (S)-2-hydroxy-acid oxidase, peroxisomal; oxidoreductase (oxygen(A)); HET: FMN; 2.00A {Spinacia oleracea} SCOP: c.1.4.1 PDB: 1gyl_A* 1al8_A* 1al7_A* 2cdh_0

Probab=83.18  E-value=2.4  Score=32.29  Aligned_cols=39  Identities=21%  Similarity=0.264  Sum_probs=32.1

Q ss_pred             hHHHHHHHHcCCeEEEeCCCCHHHHHHHHHcCCCcEEecc
Q 046574           12 HSLLLMRKAFKGTFLVAGGYDREDGNKAIAEGRADLVVYG   51 (104)
Q Consensus        12 ~~~~~ir~~~~~pvi~~Ggi~~~~ae~~l~~g~~DlVa~g   51 (104)
                      +..+.+++.++.||++-|..+++.++.+++.| +|.|.++
T Consensus       215 ~~i~~l~~~~~~pv~vK~~~~~e~a~~a~~~G-ad~I~vs  253 (370)
T 1gox_A          215 KDVAWLQTITSLPILVKGVITAEDARLAVQHG-AAGIIVS  253 (370)
T ss_dssp             HHHHHHHHHCCSCEEEECCCSHHHHHHHHHTT-CSEEEEC
T ss_pred             HHHHHHHHHhCCCEEEEecCCHHHHHHHHHcC-CCEEEEC
Confidence            35677888899999975556999999999998 7998873

>3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp}

Probab=82.81  E-value=1.7  Score=31.07  Aligned_cols=57  Identities=19%  Similarity=0.268  Sum_probs=40.0

Q ss_pred             hHHHHHHHHcCCeEEEe-----CC---C---CHHHHHHHHHcCCCcEEecchHHhhCCc----HHHHHhh-CCC
Q 046574           12 HSLLLMRKAFKGTFLVA-----GG---Y---DREDGNKAIAEGRADLVVYGRFFLANPD----LPRRFEF-NAP   69 (104)
Q Consensus        12 ~~~~~ir~~~~~pvi~~-----Gg---i---~~~~ae~~l~~g~~DlVa~gR~~lanPd----l~~ri~~-g~~   69 (104)
                      +..+.+|+.++.|||..     ++   +   +.++++++++.| +|+|.+.-....+|+    +++++++ |..
T Consensus        59 ~~i~~ir~~v~~Pvig~~k~~~~~~~~~I~~~~~~i~~~~~aG-ad~I~l~~~~~~~p~~l~~~i~~~~~~g~~  131 (229)
T 3q58_A           59 ENLRTVRPHLSVPIIGIIKRDLTGSPVRITPYLQDVDALAQAG-ADIIAFDASFRSRPVDIDSLLTRIRLHGLL  131 (229)
T ss_dssp             HHHHHHGGGCCSCEEEECBCCCSSCCCCBSCSHHHHHHHHHHT-CSEEEEECCSSCCSSCHHHHHHHHHHTTCE
T ss_pred             HHHHHHHHhcCCCEEEEEeecCCCCceEeCccHHHHHHHHHcC-CCEEEECccccCChHHHHHHHHHHHHCCCE
Confidence            45678899999998842     22   3   457899999999 799988766656774    5566554 443

>2i1o_A Nicotinate phosphoribosyltransferase; ZIN ION, zinc finger M structural genomics, PSI, protein structure initiative; 2.40A {Thermoplasma acidophilum} PDB: 1ytd_A* 1yte_A* 1ytk_A

Probab=82.73  E-value=4  Score=31.72  Aligned_cols=60  Identities=18%  Similarity=0.197  Sum_probs=42.5

Q ss_pred             chHHHHHHHHc------CCeEEEeCCCCHHHHHHHHHcCCCcEEecchHHhhCC--cHHHHH--hhCCCCC
Q 046574           11 PHSLLLMRKAF------KGTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANP--DLPRRF--EFNAPLN   71 (104)
Q Consensus        11 ~~~~~~ir~~~------~~pvi~~Ggi~~~~ae~~l~~g~~DlVa~gR~~lanP--dl~~ri--~~g~~l~   71 (104)
                      ....+.+++++      ...++++||++.+.+.++.+.| +|.+++|..+..-|  |++.++  .+|.|..
T Consensus       253 ~~~v~~v~~~ld~~G~~~~~I~aSggl~~~~i~~l~~~G-vD~~gvGt~l~~~~~ld~~~Klv~~~g~p~~  322 (398)
T 2i1o_A          253 EALIREVRWELALRGRSDIKIMVSGGLDENTVKKLREAG-AEAFGVGTSISSAKPFDFAMDIVEVNGKPET  322 (398)
T ss_dssp             HHHHHHHHHHHHHTTCTTSEEEEESSCCHHHHHHHHHTT-CCEEEECHHHHTCCCCCEEEEEEEETTEECC
T ss_pred             HHHHHHHHHHHHhCCCCceEEEEeCCCCHHHHHHHHHcC-CCEEEeCcccCCCCCccEEEEEEEeCCcceE
Confidence            34455566542      2479999999999999999998 59999999888766  333333  2455543

>2vxn_A Triosephosphate isomerase; fatty acid biosynthesis, transition state analogue, glycolysis, pentose shunt, gluconeogenesis, TIM, glycosome; HET: PGH PGA; 0.82A {Leishmania mexicana} PDB: 1if2_A* 1qds_A 1n55_A* 2y61_A 2y62_A 2y63_A 1amk_A 1tpf_A 1iig_A 1ag1_O* 1iih_A 1tpd_A 1trd_A* 2v5l_A 4tim_A* 5tim_A 6tim_A*

Probab=82.57  E-value=1.3  Score=32.70  Aligned_cols=42  Identities=14%  Similarity=0.192  Sum_probs=37.3

Q ss_pred             CeEEEeCCCCHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHh
Q 046574           23 GTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANPDLPRRFE   65 (104)
Q Consensus        23 ~pvi~~Ggi~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~   65 (104)
                      ++++..|+++++.+.+++..-.+|-+.+|+.-|. .||..-+.
T Consensus       207 vrIlYGGSV~~~N~~~l~~~~diDG~LVGgAsL~-~~F~~Ii~  248 (251)
T 2vxn_A          207 LRILYGGSVNAANAATLYAKPDINGFLVGGASLK-PEFRDIID  248 (251)
T ss_dssp             CEEEEESSCCTTTHHHHHTSTTCCEEEESGGGGS-TTHHHHHH
T ss_pred             ccEEEcCCcCHhHHHHHhcCCCCCeeeecHHHHH-HHHHHHHH
Confidence            5788888899999999999989999999999999 88977654

>3p3b_A Mandelate racemase/muconate lactonizing protein; enolase superfamily fold, galacturonate dehydratase, D-tartr galacturonate, lyase; HET: TAR; 1.65A {Geobacillus SP} PDB: 3ops_A* 3n4f_A* 3qpe_A*

Probab=82.53  E-value=1.1  Score=34.18  Aligned_cols=38  Identities=11%  Similarity=-0.036  Sum_probs=33.5

Q ss_pred             hHHHHHHHH-----cCCeEEEeCCC-CHHHHHHHHHcCCCcEEec
Q 046574           12 HSLLLMRKA-----FKGTFLVAGGY-DREDGNKAIAEGRADLVVY   50 (104)
Q Consensus        12 ~~~~~ir~~-----~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~   50 (104)
                      .....+++.     .++||++.+ + +++.+++++++|.+|+|.+
T Consensus       241 ~~~~~l~~~l~~~g~~iPIa~dE-~~~~~~~~~~i~~~~~d~v~i  284 (392)
T 3p3b_A          241 ALYEDLKEWLGQRGQNVLIADGE-GLASPHLIEWATRGRVDVLQY  284 (392)
T ss_dssp             HHHHHHHHHHHHHTCCCEEEECC-SSCCTTHHHHHHTTSCCEECC
T ss_pred             HHHHHHHHhhccCCCCccEEecC-CCCHHHHHHHHHcCCCCEEEe
Confidence            455678888     889999999 9 9999999999999999877

>2jgq_A Triosephosphate isomerase; glycolysis, pentose shunt, gluconeogenesis, lipid synthesis, fatty acid biosynthesis; HET: QGA; 2.3A {Helicobacter pylori}

Probab=82.36  E-value=0.65  Score=33.87  Aligned_cols=55  Identities=9%  Similarity=0.153  Sum_probs=43.9

Q ss_pred             CcchHHHHHHHHc--CCeEEEeCCCCHHHHHHHHHcCCCcEEecchHHhhCCcHHHH
Q 046574            9 ECPHSLLLMRKAF--KGTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANPDLPRR   63 (104)
Q Consensus         9 ~~~~~~~~ir~~~--~~pvi~~Ggi~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~r   63 (104)
                      ++++....||+.+  +++++..|+++++.+.+++..-.+|-+.+|++-|.=.||..-
T Consensus       173 ~a~ev~~~IR~~l~~~vrIlYGGSV~~~N~~~l~~~~diDG~LVGgAsl~a~~f~~i  229 (233)
T 2jgq_A          173 DIYLTHGFLKQILNQKTPLLYGGSVNTQNAKEILGIDSVDGLLIGSASWELENFKTI  229 (233)
T ss_dssp             HHHHHHHHHHHHSCTTSCEEEESSCCTTTHHHHHTSTTCCEEEESGGGGSHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCCcEEEcCCcChhhHHHHhcCCCCCeeEecHHHhChHHHHHH
Confidence            4445667799887  368999899999999999999889999999988854456543

>3sr7_A Isopentenyl-diphosphate delta-isomerase; isopentenyl pyrophosphate isomerase, TIM-barrel; 2.04A {Streptococcus mutans}

Probab=82.30  E-value=2.2  Score=32.85  Aligned_cols=38  Identities=21%  Similarity=0.139  Sum_probs=31.5

Q ss_pred             hHHHHHHHHcCCeEEEeCC---CCHHHHHHHHHcCCCcEEec
Q 046574           12 HSLLLMRKAFKGTFLVAGG---YDREDGNKAIAEGRADLVVY   50 (104)
Q Consensus        12 ~~~~~ir~~~~~pvi~~Gg---i~~~~ae~~l~~g~~DlVa~   50 (104)
                      +..+.+++.+++|||+=+-   ++++.|+.+++.| +|.|.+
T Consensus       196 ~~I~~l~~~~~~PVivK~vg~g~s~e~A~~l~~aG-ad~I~V  236 (365)
T 3sr7_A          196 KHLSDYAKKLQLPFILKEVGFGMDVKTIQTAIDLG-VKTVDI  236 (365)
T ss_dssp             HHHHHHHHHCCSCEEEEECSSCCCHHHHHHHHHHT-CCEEEC
T ss_pred             HHHHHHHHhhCCCEEEEECCCCCCHHHHHHHHHcC-CCEEEE
Confidence            4567888999999988743   5999999999999 798877

>3ndo_A Deoxyribose-phosphate aldolase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; HET: GOL; 1.25A {Mycobacterium smegmatis} PDB: 3ng3_A

Probab=81.99  E-value=3.2  Score=30.08  Aligned_cols=40  Identities=15%  Similarity=0.223  Sum_probs=32.1

Q ss_pred             hHHHHHHHHcC--CeEEEeCCC-CHHHHHHHHHcCCCcEEecch
Q 046574           12 HSLLLMRKAFK--GTFLVAGGY-DREDGNKAIAEGRADLVVYGR   52 (104)
Q Consensus        12 ~~~~~ir~~~~--~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR   52 (104)
                      +..+.+++.++  .+|-++||| +.++|.+.++.| ++-|+...
T Consensus       178 edv~lm~~~v~~~v~VKaaGGIrt~~~a~~~i~aG-a~RiGtS~  220 (231)
T 3ndo_A          178 QAVEIMARTVGERLGVKASGGIRTAEQAAAMLDAG-ATRLGLSG  220 (231)
T ss_dssp             HHHHHHHHHHTTTSEEEEESSCCSHHHHHHHHHTT-CSEEEESS
T ss_pred             HHHHHHHHHhCCCceEEEeCCCCCHHHHHHHHHhc-chhcccch
Confidence            45667888875  489999999 999999999999 68655543

>4e4f_A Mannonate dehydratase; magnesium binding, enzyme function initiative, isomerase; 2.00A {Pectobacterium carotovorum subsp}

Probab=81.85  E-value=0.77  Score=35.74  Aligned_cols=39  Identities=18%  Similarity=0.138  Sum_probs=34.5

Q ss_pred             hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEec
Q 046574           12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVY   50 (104)
Q Consensus        12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~   50 (104)
                      .....+++.+++||++...+ ++++++++++.|.+|+|.+
T Consensus       269 ~~~~~l~~~~~iPIa~dE~~~~~~~~~~~i~~ga~d~v~~  308 (426)
T 4e4f_A          269 ACFRLIRQHTVTPIAVGEVFNSIWDCKQLIEEQLIDYIRT  308 (426)
T ss_dssp             GGGHHHHTTCCSCEEECTTCCSGGGTHHHHHTTCCSEECC
T ss_pred             HHHHHHHhcCCCCEEeCCCcCCHHHHHHHHHcCCCCEEEe
Confidence            34567899999999999999 9999999999999999876

>3mwc_A Mandelate racemase/muconate lactonizing protein; enolase, structural genomics, protein structure initiative, nysgrc; 1.80A {Kosmotoga olearia}

Probab=81.31  E-value=2.7  Score=32.27  Aligned_cols=39  Identities=5%  Similarity=-0.009  Sum_probs=34.5

Q ss_pred             hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEec
Q 046574           12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVY   50 (104)
Q Consensus        12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~   50 (104)
                      .....+++.+++||++...+ ++.+++++++.+.+|+|.+
T Consensus       245 ~~~~~l~~~~~iPIa~dE~~~~~~~~~~~~~~~~~d~v~~  284 (400)
T 3mwc_A          245 LDLKELGERIETPICLDESLISSRVAEFVAKLGISNIWNI  284 (400)
T ss_dssp             HHHHHHHHHSSSCEEESTTCCSHHHHHHHHHTTCCSEEEE
T ss_pred             HHHHHHHhhCCCCEEEeCCcCCHHHHHHHHhcCCCCEEEE
Confidence            45567889899999999998 9999999999999999876

>3toy_A Mandelate racemase/muconate lactonizing enzyme FA protein; enolase, magnesium binding site, lyase; HET: P4C; 1.80A {Bradyrhizobium SP} PDB: 3tte_A*

Probab=81.24  E-value=1.8  Score=33.02  Aligned_cols=39  Identities=15%  Similarity=0.135  Sum_probs=34.5

Q ss_pred             hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEec
Q 046574           12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVY   50 (104)
Q Consensus        12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~   50 (104)
                      .....+++.+++||++...+ ++.+++++++.|.+|+|.+
T Consensus       254 ~~~~~l~~~~~iPIa~dE~~~~~~~~~~~i~~~a~d~v~i  293 (383)
T 3toy_A          254 SGHAAVRERSEIPIQAGENWWFPRGFAEAIAAGASDFIMP  293 (383)
T ss_dssp             HHHHHHHHHCSSCEEECTTCCHHHHHHHHHHHTCCSEECC
T ss_pred             HHHHHHHhhcCCCEEeCCCcCCHHHHHHHHHcCCCCEEEe
Confidence            35567899999999999999 8999999999999999876

>3tsm_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, ssgcid, seattle structural GE center for infectious disease, lyase; 2.15A {Brucella melitensis} SCOP: c.1.2.0

Probab=81.10  E-value=1.8  Score=32.11  Aligned_cols=48  Identities=19%  Similarity=-0.036  Sum_probs=39.3

Q ss_pred             hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcH
Q 046574           12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDL   60 (104)
Q Consensus        12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl   60 (104)
                      +.+..+|+.++.||+.-+.| ++.++.++...| +|.|.+.-..+.+.++
T Consensus       110 ~~L~~ir~~v~lPVl~Kdfi~d~~qi~ea~~~G-AD~VlLi~a~L~~~~l  158 (272)
T 3tsm_A          110 EFLTAARQACSLPALRKDFLFDPYQVYEARSWG-ADCILIIMASVDDDLA  158 (272)
T ss_dssp             HHHHHHHHTSSSCEEEESCCCSTHHHHHHHHTT-CSEEEEETTTSCHHHH
T ss_pred             HHHHHHHHhcCCCEEECCccCCHHHHHHHHHcC-CCEEEEcccccCHHHH
Confidence            46678899999999988887 898999999888 7999998777754443

>3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex, oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium parvum}

Probab=80.30  E-value=2.6  Score=32.15  Aligned_cols=39  Identities=21%  Similarity=0.269  Sum_probs=30.0

Q ss_pred             hHHHHHHHHcCCeEEEeCCCCHHHHHHHHHcCCCcEEecc
Q 046574           12 HSLLLMRKAFKGTFLVAGGYDREDGNKAIAEGRADLVVYG   51 (104)
Q Consensus        12 ~~~~~ir~~~~~pvi~~Ggi~~~~ae~~l~~g~~DlVa~g   51 (104)
                      +..+.+++.++.|||+.+..+++.|+.+++.| +|+|.+|
T Consensus       135 ~~i~~i~~~~~~~Vivg~v~t~e~A~~l~~aG-aD~I~VG  173 (361)
T 3khj_A          135 RTLKEIKSKMNIDVIVGNVVTEEATKELIENG-ADGIKVG  173 (361)
T ss_dssp             HHHHHHHHHCCCEEEEEEECSHHHHHHHHHTT-CSEEEEC
T ss_pred             HHHHHHHHhcCCcEEEccCCCHHHHHHHHHcC-cCEEEEe
Confidence            34566777787888874334999999999998 7998874

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	104
d1icpa_	364	c.1.4.1 (A:) 12-oxophytodienoate reductase (OPR, O	1e-39
d1q45a_	380	c.1.4.1 (A:) 12-oxophytodienoate reductase (OPR, O	2e-34
d1gwja_	374	c.1.4.1 (A:) Morphinone reductase {Pseudomonas put	5e-32
d1vyra_	363	c.1.4.1 (A:) Pentaerythritol tetranirate reductase	1e-30
d1oyaa_	399	c.1.4.1 (A:) Old yellow enzyme (OYE) {Lager yeast	7e-30
d1djqa1	340	c.1.4.1 (A:1-340) Trimethylamine dehydrogenase, N-	7e-16
d1ps9a1	330	c.1.4.1 (A:1-330) 2,4-dienoyl-CoA reductase, N-ter	1e-14
d1z41a1	337	c.1.4.1 (A:2-338) NADPH dehydrogenase NamA {Bacill	3e-14

>d1icpa_ c.1.4.1 (A:) 12-oxophytodienoate reductase (OPR, OYE homolog) {Tomato (Lycopersicon esculentum), OPR1 [TaxId: 4081]} Length = 364

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: 12-oxophytodienoate reductase (OPR, OYE homolog)
species: Tomato (Lycopersicon esculentum), OPR1 [TaxId: 4081]

 Score =  132 bits (333), Expect = 1e-39
 Identities = 71/94 (75%), Positives = 82/94 (87%)

Query: 1   MKTVGEKSECPHSLLLMRKAFKGTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANPDL 60
           MKT  EK EC  SL+ MRKA+KGTF+VAGGYDREDGN+A+ E RADLV YGR F++NPDL
Sbjct: 271 MKTAWEKIECTESLVPMRKAYKGTFIVAGGYDREDGNRALIEDRADLVAYGRLFISNPDL 330

Query: 61  PRRFEFNAPLNKYNRETFYVSDPVVGYTDYPFLD 94
           P+RFE NAPLNKYNR+TFY SDP+VGYTDYPFL+
Sbjct: 331 PKRFELNAPLNKYNRDTFYTSDPIVGYTDYPFLE 364

>d1q45a_ c.1.4.1 (A:) 12-oxophytodienoate reductase (OPR, OYE homolog) {Thale cress (Arabidopsis thaliana), OPR3 [TaxId: 3702]} Length = 380

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: 12-oxophytodienoate reductase (OPR, OYE homolog)
species: Thale cress (Arabidopsis thaliana), OPR3 [TaxId: 3702]

 Score =  119 bits (298), Expect = 2e-34
 Identities = 47/77 (61%), Positives = 61/77 (79%)

Query: 17  MRKAFKGTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEFNAPLNKYNRE 76
           +R A+ GTF+ +GG+++E G +A+ +G ADLV YGR F+ANPDL  RF+ +  LNKYNR+
Sbjct: 302 LRMAYNGTFMSSGGFNKELGMQAVQQGDADLVSYGRLFIANPDLVSRFKIDGELNKYNRK 361

Query: 77  TFYVSDPVVGYTDYPFL 93
           TFY  DPVVGYTDYPFL
Sbjct: 362 TFYTQDPVVGYTDYPFL 378

>d1gwja_ c.1.4.1 (A:) Morphinone reductase {Pseudomonas putida [TaxId: 303]} Length = 374

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Morphinone reductase
species: Pseudomonas putida [TaxId: 303]

 Score =  113 bits (282), Expect = 5e-32
 Identities = 38/78 (48%), Positives = 46/78 (58%), Gaps = 1/78 (1%)

Query: 17  MRKAFKGTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEFNAPLNKYNRE 76
           MR+ FKG  +  G YD       + +  AD V +GR F+ANPDLP RF   A LN+ +  
Sbjct: 291 MRQRFKGGLIYCGNYDAGRAQARLDDNTADAVAFGRPFIANPDLPERFRLGAALNEPDPS 350

Query: 77  TFYVSDPVVGYTDYPFLD 94
           TFY     VGYTDYPFLD
Sbjct: 351 TFYGGAE-VGYTDYPFLD 367

>d1vyra_ c.1.4.1 (A:) Pentaerythritol tetranirate reductase {Enterobacter cloacae [TaxId: 550]} Length = 363

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Pentaerythritol tetranirate reductase
species: Enterobacter cloacae [TaxId: 550]

 Score =  108 bits (271), Expect = 1e-30
 Identities = 32/77 (41%), Positives = 41/77 (53%), Gaps = 1/77 (1%)

Query: 17  MRKAFKGTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEFNAPLNKYNRE 76
           +R+ F G  + AG Y  E     I +G  D V +GR ++ANPDL  R +  A LN    E
Sbjct: 288 VRERFHGVIIGAGAYTAEKAEDLIGKGLIDAVAFGRDYIANPDLVARLQKKAELNPQRPE 347

Query: 77  TFYVSDPVVGYTDYPFL 93
           +FY      GYTDYP L
Sbjct: 348 SFYGGGA-EGYTDYPSL 363

>d1oyaa_ c.1.4.1 (A:) Old yellow enzyme (OYE) {Lager yeast (Saccharomyces pastorianus) [TaxId: 27292]} Length = 399

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Old yellow enzyme (OYE)
species: Lager yeast (Saccharomyces pastorianus) [TaxId: 27292]

 Score =  107 bits (268), Expect = 7e-30
 Identities = 34/94 (36%), Positives = 47/94 (50%), Gaps = 2/94 (2%)

Query: 2   KTVGEKSECPHSLLLMRKAFKGTFLVAGGYDREDG-NKAIAEGRADLVVYGRFFLANPDL 60
            T GE      S   +   +KG  + AG +       +   + +  L+ YGRFF++NPDL
Sbjct: 297 LTEGEGEYEGGSNDFVYSIWKGPVIRAGNFALHPEVVREEVKDKRTLIGYGRFFISNPDL 356

Query: 61  PRRFEFNAPLNKYNRETFYVSDPVVGYTDYPFLD 94
             R E   PLNKY+R+TFY      GY DYP  +
Sbjct: 357 VDRLEKGLPLNKYDRDTFYQMSA-HGYIDYPTYE 389

>d1djqa1 c.1.4.1 (A:1-340) Trimethylamine dehydrogenase, N-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} Length = 340

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Trimethylamine dehydrogenase, N-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

 Score = 68.9 bits (167), Expect = 7e-16
 Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 1/51 (1%)

Query: 16  LMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLPRRFE 65
           L+++  K   L  G Y D E   + + +G AD++   R  +A+P LP++ E
Sbjct: 285 LVKQVSKKPVLGVGRYTDPEKMIEIVTKGYADIIGCARPSIADPFLPQKVE 335

>d1ps9a1 c.1.4.1 (A:1-330) 2,4-dienoyl-CoA reductase, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 330

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: 2,4-dienoyl-CoA reductase, N-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 65.3 bits (158), Expect = 1e-14
 Identities = 10/50 (20%), Positives = 22/50 (44%), Gaps = 1/50 (2%)

Query: 17  MRKAFKGTFLVAGG-YDREDGNKAIAEGRADLVVYGRFFLANPDLPRRFE 65
           ++       +      D +  +  ++ G AD+V   R FLA+ +L  + +
Sbjct: 275 LKGHVSLPLVTTNRINDPQVADDILSRGDADMVSMARPFLADAELLSKAQ 324

>d1z41a1 c.1.4.1 (A:2-338) NADPH dehydrogenase NamA {Bacillus subtilis [TaxId: 1423]} Length = 337

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: NADPH dehydrogenase NamA
species: Bacillus subtilis [TaxId: 1423]

 Score = 64.2 bits (155), Expect = 3e-14
 Identities = 15/65 (23%), Positives = 22/65 (33%), Gaps = 6/65 (9%)

Query: 17  MRKAFKGTFLVAGG-YDREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEFNAPLN---- 71
           +R+         G   D     + +  GRADL+  GR  L +P   R             
Sbjct: 271 IREQADMATGAVGMITDGSMAEEILQNGRADLIFIGRELLRDPFFARTAAKQLNTEIPAP 330

Query: 72  -KYNR 75
            +Y R
Sbjct: 331 VQYER 335

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	104
d1gwja_	374	Morphinone reductase {Pseudomonas putida [TaxId: 3	99.87
d1q45a_	380	12-oxophytodienoate reductase (OPR, OYE homolog) {	99.84
d1oyaa_	399	Old yellow enzyme (OYE) {Lager yeast (Saccharomyce	99.84
d1vyra_	363	Pentaerythritol tetranirate reductase {Enterobacte	99.84
d1icpa_	364	12-oxophytodienoate reductase (OPR, OYE homolog) {	99.83
d1djqa1	340	Trimethylamine dehydrogenase, N-terminal domain {M	99.57
d1z41a1	337	NADPH dehydrogenase NamA {Bacillus subtilis [TaxId	99.56
d1ps9a1	330	2,4-dienoyl-CoA reductase, N-terminal domain {Esch	99.56
d1ep3a_	311	Dihydroorotate dehydrogenase {Lactococcus lactis,	98.46
d1gtea2	312	Dihydropyrimidine dehydrogenase, domain 4 {Pig (Su	98.07
d1y0ea_	222	Putative N-acetylmannosamine-6-phosphate 2-epimera	98.04
d1juba_	311	Dihydroorotate dehydrogenase {Lactococcus lactis,	97.83
d1vhna_	305	Putative flavin oxidoreducatase TM0096 {Thermotoga	97.74
d1yxya1	230	Putative N-acetylmannosamine-6-phosphate 2-epimera	97.66
d1tv5a1	409	Dihydroorotate dehydrogenase {Plasmodium falciparu	97.64
d1f76a_	336	Dihydroorotate dehydrogenase {Escherichia coli [Ta	97.62
d1d3ga_	367	Dihydroorotate dehydrogenase {Human (Homo sapiens)	97.58
d2b4ga1	312	Dihydroorotate dehydrogenase {Trypanosoma brucei [	97.42
d1thfd_	253	Cyclase subunit (or domain) of imidazoleglycerolph	97.24
d1p4ca_	353	Membrane-associated (S)-mandelate dehydrogenase {P	97.18
d1xi3a_	206	Thiamin phosphate synthase {Archaeon (Pyrococcus f	97.12
d1ka9f_	251	Cyclase subunit (or domain) of imidazoleglycerolph	96.97
d1h5ya_	252	Cyclase subunit (or domain) of imidazoleglycerolph	96.95
d1goxa_	359	Glycolate oxidase {Spinach (Spinacia oleracea) [Ta	96.93
d1vzwa1	239	Phosphoribosylformimino-5-aminoimidazole carboxami	96.91
d1tb3a1	349	Hydroxyacid oxidase {Rat (Rattus norvegicus) [TaxI	96.9
d1p0ka_	329	Isopentenyl-diphosphate delta-isomerase {Bacillus	96.74
d1jvna1	323	Cyclase subunit (or domain) of imidazoleglycerolph	96.69
d1vcfa1	310	Isopentenyl-diphosphate delta-isomerase {Thermus t	96.69
d2tpsa_	226	Thiamin phosphate synthase {Bacillus subtilis [Tax	96.42
d1kbia1	414	Flavocytochrome b2, C-terminal domain {Baker's yea	96.21
d1jvna1	323	Cyclase subunit (or domain) of imidazoleglycerolph	96.11
d1qopa_	267	Trp synthase alpha-subunit {Salmonella typhimurium	96.08
d1ka9f_	251	Cyclase subunit (or domain) of imidazoleglycerolph	96.01
d1vrda1	330	Inosine monophosphate dehydrogenase (IMPDH) {Therm	95.79
d1geqa_	248	Trp synthase alpha-subunit {Archaeon Pyrococcus fu	95.6
d1vzwa1	239	Phosphoribosylformimino-5-aminoimidazole carboxami	95.49
d1h5ya_	252	Cyclase subunit (or domain) of imidazoleglycerolph	95.48
d1thfd_	253	Cyclase subunit (or domain) of imidazoleglycerolph	95.42
d1h1ya_	220	D-ribulose-5-phosphate 3-epimerase {Rice (Oryza sa	95.31
d1qo2a_	241	Phosphoribosylformimino-5-aminoimidazole carboxami	95.28
d1tqxa_	221	D-ribulose-5-phosphate 3-epimerase {Plasmodium fal	95.12
d1hg3a_	224	Triosephosphate isomerase {Archaeon Pyrococcus woe	95.03
d1qo2a_	241	Phosphoribosylformimino-5-aminoimidazole carboxami	95.0
d1a53a_	247	Indole-3-glycerophosphate synthase, IPGS {Archaeon	94.89
d1jr1a1	378	Inosine monophosphate dehydrogenase (IMPDH) {Chine	94.87
d1rd5a_	261	Trp synthase alpha-subunit {Maize (Zea mays) [TaxI	94.82
d1q6oa_	213	3-keto-L-gulonate 6-phosphate decarboxylase {Esche	94.67
d1w0ma_	226	Triosephosphate isomerase {Thermoproteus tenax [Ta	94.6
d1viza_	229	PcrB protein homolog YerE {Bacillus subtilis [TaxI	94.54
d1zfja1	365	Inosine monophosphate dehydrogenase (IMPDH) {Strep	94.28
d1wv2a_	243	Thiazole biosynthesis protein ThiG {Pseudomonas ae	94.19
d1eepa_	388	Inosine monophosphate dehydrogenase (IMPDH) {Lyme	94.12
d1xm3a_	251	Thiazole biosynthesis protein ThiG {Bacillus subti	93.93
d2flia1	217	D-ribulose-5-phosphate 3-epimerase {Streptococcus	93.65
d1rpxa_	230	D-ribulose-5-phosphate 3-epimerase {Potato (Solanu	93.53
d2f6ua1	231	(S)-3-O-geranylgeranylglyceryl phosphate synthase	93.42
d1wa3a1	202	KDPG aldolase {Thermotoga maritima [TaxId: 2336]}	93.37
d1znna1	254	Pyridoxal biosynthesis lyase PdxS {Bacillus stearo	93.08
d2czda1	206	Orotidine 5'-monophosphate decarboxylase (OMP deca	93.06
d2cu0a1	368	Inosine monophosphate dehydrogenase (IMPDH) {Pyroc	93.05
d1pvna1	362	Inosine monophosphate dehydrogenase (IMPDH) {Tritr	92.87
d1vc4a_	254	Indole-3-glycerophosphate synthase, IPGS {Thermus	91.65
d1vhca_	212	Hypothetical protein HI0047 {Haemophilus influenza	91.33
d1piia2	254	Indole-3-glycerophosphate synthase, IPGS {Escheric	91.23
d1tqja_	221	D-ribulose-5-phosphate 3-epimerase {Synechocystis	90.71
d1eixa_	231	Orotidine 5'-monophosphate decarboxylase (OMP deca	89.59
d1wbha1	213	KDPG aldolase {Escherichia coli [TaxId: 562]}	89.21
d1o5xa_	246	Triosephosphate isomerase {Plasmodium falciparum [	88.73
d1qapa1	167	Quinolinic acid phosphoribosyltransferase (Nicotin	88.45
d1n55a_	249	Triosephosphate isomerase {Leishmania mexicana [Ta	88.27
d1i4na_	251	Indole-3-glycerophosphate synthase, IPGS {Thermoto	87.85
d1wbha1	213	KDPG aldolase {Escherichia coli [TaxId: 562]}	87.68
d1ea0a2	771	Alpha subunit of glutamate synthase, central and F	87.16
d1mxsa_	216	KDPG aldolase {Pseudomonas putida [TaxId: 303]}	86.82
d1ujpa_	271	Trp synthase alpha-subunit {Thermus thermophilus [	86.75
d1mo0a_	257	Triosephosphate isomerase {Nematode (Caenorhabditi	86.73
d1mxsa_	216	KDPG aldolase {Pseudomonas putida [TaxId: 303]}	86.04
d1vhca_	212	Hypothetical protein HI0047 {Haemophilus influenza	86.03
d1kv5a_	249	Triosephosphate isomerase {Trypanosoma brucei [Tax	85.87
d1r2ra_	246	Triosephosphate isomerase {Rabbit (Oryctolagus cun	85.6
d1ofda2	809	Alpha subunit of glutamate synthase, central and F	85.07
d1dbta_	237	Orotidine 5'-monophosphate decarboxylase (OMP deca	84.79
d1qkka_	140	Transcriptional regulatory protein DctD, receiver	84.58
d1qpoa1	169	Quinolinic acid phosphoribosyltransferase (Nicotin	84.16
d1p0ka_	329	Isopentenyl-diphosphate delta-isomerase {Bacillus	84.11
d1zfja1	365	Inosine monophosphate dehydrogenase (IMPDH) {Strep	83.51
d1b9ba_	252	Triosephosphate isomerase {Thermotoga maritima [Ta	83.25
d1eepa_	388	Inosine monophosphate dehydrogenase (IMPDH) {Lyme	83.22
d1ny5a1	137	Transcriptional activator sigm54 (NtrC1), N-termin	82.57
d1neya_	247	Triosephosphate isomerase {Baker's yeast (Saccharo	82.43
d1xhfa1	121	Aerobic respiration control protein ArcA, N-termin	82.21
d1ytda1	270	Nicotinate phosphoribosyltransferase Ta1145 {Therm	81.57
d1dbwa_	123	Transcriptional regulatory protein FixJ, receiver	81.22
d1krwa_	123	NTRC receiver domain {Salmonella typhimurium [TaxI	80.39
d1t71a_	281	Hypothetical protein MPN349 {Mycoplasma pneumoniae	80.18

>d1gwja_ c.1.4.1 (A:) Morphinone reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Morphinone reductase
species: Pseudomonas putida [TaxId: 303]

Probab=99.87  E-value=3.4e-22  Score=153.72  Aligned_cols=84  Identities=45%  Similarity=0.788  Sum_probs=79.2

Q ss_pred             hHHHHHHHHcCCeEEEeCCCCHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHhhCCCCCCCCccccccCCCCCCcccCC
Q 046574           12 HSLLLMRKAFKGTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEFNAPLNKYNRETFYVSDPVVGYTDYP   91 (104)
Q Consensus        12 ~~~~~ir~~~~~pvi~~Ggi~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~~g~~l~~~d~~~~~~~~~~~gy~d~p   91 (104)
                      ..++.+++.+++|||++|+++++.|+++|++|.+|+|++||++|+|||||+|+++|.+++++++.+||+.+ ..||+|||
T Consensus       286 ~~~~~i~~~~~~pvi~~G~i~~~~ae~~l~~g~aDlV~~gR~~iadPd~~~K~~~G~~l~~~~~~~~~~~~-~~g~~~~p  364 (374)
T d1gwja_         286 GFREQMRQRFKGGLIYCGNYDAGRAQARLDDNTADAVAFGRPFIANPDLPERFRLGAALNEPDPSTFYGGA-EVGYTDYP  364 (374)
T ss_dssp             THHHHHHHHCCSEEEEESSCCHHHHHHHHHTTSCSEEEESHHHHHCTTHHHHHHHTCCCCCCCGGGSSSSS-STTTTCCC
T ss_pred             HHHHHHHHHcCCCEEEECCcCHHHHHHHHHcCCCcEehhhHHHHHCccHHHHHHcCCCCCCCChhhccCCC-CCCcCCCC
Confidence            46778999999999999999999999999999999999999999999999999999999999999999876 69999999


Q ss_pred             CCCCc
Q 046574           92 FLDTS   96 (104)
Q Consensus        92 ~~~~~   96 (104)
                      ++++.
T Consensus       365 ~~~~~  369 (374)
T d1gwja_         365 FLDNG  369 (374)
T ss_dssp             CCCCS
T ss_pred             Ccchh
Confidence            99753

>d1q45a_ c.1.4.1 (A:) 12-oxophytodienoate reductase (OPR, OYE homolog) {Thale cress (Arabidopsis thaliana), OPR3 [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: 12-oxophytodienoate reductase (OPR, OYE homolog)
species: Thale cress (Arabidopsis thaliana), OPR3 [TaxId: 3702]

Probab=99.84  E-value=3.6e-21  Score=147.67  Aligned_cols=83  Identities=57%  Similarity=1.066  Sum_probs=77.0

Q ss_pred             HHHHHHHHcCCeEEEeCCCCHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHhhCCCCCCCCccccccCCCCCCcccCCC
Q 046574           13 SLLLMRKAFKGTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEFNAPLNKYNRETFYVSDPVVGYTDYPF   92 (104)
Q Consensus        13 ~~~~ir~~~~~pvi~~Ggi~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~~g~~l~~~d~~~~~~~~~~~gy~d~p~   92 (104)
                      ..+.+|+.+++|||++|+++++.|+++|++|++|+|++||+||+|||||+|++.|.+++++++.++|+.....||+|||+
T Consensus       298 ~~~~ik~~~~~pv~~~Gg~~~~~ae~~l~~G~~DlV~~gR~liaDPdlv~K~~~g~~l~~~~~~~~~~~~~~~~~~~~~~  377 (380)
T d1q45a_         298 LMKSLRMAYNGTFMSSGGFNKELGMQAVQQGDADLVSYGRLFIANPDLVSRFKIDGELNKYNRKTFYTQDPVVGYTDYPF  377 (380)
T ss_dssp             HHHHHHHHSCSCEEEESSCCHHHHHHHHHTTSCSEEEESHHHHHCTTHHHHHHTTCCCCCCCGGGSSCCCSSTTTTCSCC
T ss_pred             HHHHHhhccCCcEEeCCCCCHHHHHHHHHcCCccchhhhHHHHHCccHHHHHhcCCCCCCCCcccccCCCCCCCcCCCCC
Confidence            45678888999999999999999999999999999999999999999999999999999999999999765689999999


Q ss_pred             CCC
Q 046574           93 LDT   95 (104)
Q Consensus        93 ~~~   95 (104)
                      +.+
T Consensus       378 ~~~  380 (380)
T d1q45a_         378 LAP  380 (380)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            853

>d1oyaa_ c.1.4.1 (A:) Old yellow enzyme (OYE) {Lager yeast (Saccharomyces pastorianus) [TaxId: 27292]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Old yellow enzyme (OYE)
species: Lager yeast (Saccharomyces pastorianus) [TaxId: 27292]

Probab=99.84  E-value=6.6e-22  Score=153.25  Aligned_cols=86  Identities=36%  Similarity=0.655  Sum_probs=75.5

Q ss_pred             HHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHhhCCCCCCCCccccccCCCCCCcccCC
Q 046574           13 SLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEFNAPLNKYNRETFYVSDPVVGYTDYP   91 (104)
Q Consensus        13 ~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~~g~~l~~~d~~~~~~~~~~~gy~d~p   91 (104)
                      ..+.+|+.+++|||++|+| +.+++++.+.+|.+|+|++||+||+|||||+|+++|+|++++|+.++|+.+ ..||+|||
T Consensus       308 ~~~~ik~~~~~PVi~~G~i~~~~~~~~~i~~~~aDlV~~gR~liaDP~l~~K~~~G~~ln~~d~~~~~~~~-~~gyt~~p  386 (399)
T d1oyaa_         308 SNDFVYSIWKGPVIRAGNFALHPEVVREEVKDKRTLIGYGRFFISNPDLVDRLEKGLPLNKYDRDTFYQMS-AHGYIDYP  386 (399)
T ss_dssp             CTTHHHHHCCSCEEEESSCTTCHHHHHHHTTSTTEEEECCHHHHHCTTHHHHHHHTCCCBCCCGGGSSCSS-STTTTCCC
T ss_pred             HHHHHHHHhCCCEEEECCCCChHHHHHHHHcCCCeEhHHHHHHHHCccHHHHHHcCCCCCCCchhhcCCCC-CCCcCcCc
Confidence            3456899999999999999 566666666677799999999999999999999999999999999999876 68999999


Q ss_pred             CCCCcccc
Q 046574           92 FLDTSSYV   99 (104)
Q Consensus        92 ~~~~~~~~   99 (104)
                      ++++++-+
T Consensus       387 ~~~~~~~~  394 (399)
T d1oyaa_         387 TYEEALKL  394 (399)
T ss_dssp             CHHHHHHT
T ss_pred             chHHHHHc
Confidence            99886543

>d1vyra_ c.1.4.1 (A:) Pentaerythritol tetranirate reductase {Enterobacter cloacae [TaxId: 550]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Pentaerythritol tetranirate reductase
species: Enterobacter cloacae [TaxId: 550]

Probab=99.84  E-value=8e-21  Score=145.47  Aligned_cols=81  Identities=40%  Similarity=0.642  Sum_probs=76.2

Q ss_pred             hHHHHHHHHcCCeEEEeCCCCHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHhhCCCCCCCCccccccCCCCCCcccCC
Q 046574           12 HSLLLMRKAFKGTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEFNAPLNKYNRETFYVSDPVVGYTDYP   91 (104)
Q Consensus        12 ~~~~~ir~~~~~pvi~~Ggi~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~~g~~l~~~d~~~~~~~~~~~gy~d~p   91 (104)
                      ...+.+|+.+++|||++|++|++.|+++|++|.+|+|++||++|+|||||+|+++|++++++++.++|+.+ .+||+|||
T Consensus       283 ~~~~~~~~~~~~~vi~~G~~t~~~ae~~l~~G~~DlV~~gR~liadP~~~~K~~~g~~~~~~~~~~~~~~~-~~~y~~y~  361 (363)
T d1vyra_         283 AFRQKVRERFHGVIIGAGAYTAEKAEDLIGKGLIDAVAFGRDYIANPDLVARLQKKAELNPQRPESFYGGG-AEGYTDYP  361 (363)
T ss_dssp             HHHHHHHHHCCSEEEEESSCCHHHHHHHHHTTSCSEEEESHHHHHCTTHHHHHHHTCCCCCCCGGGSSSSS-STTTTCSC
T ss_pred             HHHHHHHHhcCceEEecCCCCHHHHHHHHHCCCcceehhhHHHHHCccHHHHHHhCCCCCCCCHhhccCCC-CCCcCCCC
Confidence            46678999999999999988999999999999999999999999999999999999999999999999876 79999999


Q ss_pred             CC
Q 046574           92 FL   93 (104)
Q Consensus        92 ~~   93 (104)
                      ++
T Consensus       362 ~~  363 (363)
T d1vyra_         362 SL  363 (363)
T ss_dssp             CC
T ss_pred             CC
Confidence            84

>d1icpa_ c.1.4.1 (A:) 12-oxophytodienoate reductase (OPR, OYE homolog) {Tomato (Lycopersicon esculentum), OPR1 [TaxId: 4081]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: 12-oxophytodienoate reductase (OPR, OYE homolog)
species: Tomato (Lycopersicon esculentum), OPR1 [TaxId: 4081]

Probab=99.83  E-value=8.2e-21  Score=145.47  Aligned_cols=83  Identities=77%  Similarity=1.385  Sum_probs=77.0

Q ss_pred             hHHHHHHHHcCCeEEEeCCCCHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHhhCCCCCCCCccccccCCCCCCcccCC
Q 046574           12 HSLLLMRKAFKGTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEFNAPLNKYNRETFYVSDPVVGYTDYP   91 (104)
Q Consensus        12 ~~~~~ir~~~~~pvi~~Ggi~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~~g~~l~~~d~~~~~~~~~~~gy~d~p   91 (104)
                      .....+++.++.|||++|+++++.|+++|.+|.+|+|++||++|+|||||+|+++|.|++++++.++|+...-.||+|||
T Consensus       282 ~~~~~i~~~~~~~vi~~g~~~~~~ae~~l~~g~aD~V~~gR~~iadPd~~~k~~~g~pi~~~~~~~~~~~~~~~g~~~~p  361 (364)
T d1icpa_         282 ESLVPMRKAYKGTFIVAGGYDREDGNRALIEDRADLVAYGRLFISNPDLPKRFELNAPLNKYNRDTFYTSDPIVGYTDYP  361 (364)
T ss_dssp             CCSHHHHHHCCSCEEEESSCCHHHHHHHHHTTSCSEEEESHHHHHCTTHHHHHHHTCCCCCCCGGGSSCCCSSTTTTCSC
T ss_pred             HHHHHHHHhcCCCEEEECCCCHHHHHHHHHcCCCceehhHHHHHHCccHHHHHHcCCCCCCCcccceeCCCCCCCcCCCC
Confidence            34567899999999999999999999999999999999999999999999999999999999999999876568999999


Q ss_pred             CCC
Q 046574           92 FLD   94 (104)
Q Consensus        92 ~~~   94 (104)
                      +++
T Consensus       362 ~~~  364 (364)
T d1icpa_         362 FLE  364 (364)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            985

>d1djqa1 c.1.4.1 (A:1-340) Trimethylamine dehydrogenase, N-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Trimethylamine dehydrogenase, N-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=99.57  E-value=1.3e-15  Score=115.04  Aligned_cols=58  Identities=28%  Similarity=0.360  Sum_probs=54.7

Q ss_pred             hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHhhCCC
Q 046574           12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEFNAP   69 (104)
Q Consensus        12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~~g~~   69 (104)
                      ..++.+|+.+++|||++|+| +++.|+++|++|.+|+|++||++|+|||||+|+++|++
T Consensus       281 ~~~~~ik~~~~~pVi~~G~i~~~~~a~~~l~~G~aDlV~~gR~~iadPdl~~k~~~Gr~  339 (340)
T d1djqa1         281 PWVKLVKQVSKKPVLGVGRYTDPEKMIEIVTKGYADIIGCARPSIADPFLPQKVEQGRY  339 (340)
T ss_dssp             HHHHHHHTTCSSCEEECSCCCCHHHHHHHHHTTSCSBEEESHHHHHCTTHHHHHHTTCG
T ss_pred             HHHHHHHHHcCCeEEEECCCCCHHHHHHHHHCCCccchhhHHHHHHCccHHHHHHccCC
Confidence            46788999999999999999 89999999999999999999999999999999999973

>d1z41a1 c.1.4.1 (A:2-338) NADPH dehydrogenase NamA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: NADPH dehydrogenase NamA
species: Bacillus subtilis [TaxId: 1423]

Probab=99.56  E-value=3.2e-15  Score=113.03  Aligned_cols=61  Identities=21%  Similarity=0.203  Sum_probs=57.1

Q ss_pred             hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHhhCCCCCC
Q 046574           12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEFNAPLNK   72 (104)
Q Consensus        12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~~g~~l~~   72 (104)
                      ...+.||+.+++|||++|+| +++.|+++|++|.+|+|++||++|+|||||+|+++++...-
T Consensus       266 ~~~~~ik~~~~~pvi~~G~i~~~~~ae~~l~~g~~D~V~~gR~~iadPd~~~k~~~~~~~~i  327 (337)
T d1z41a1         266 SFAEKIREQADMATGAVGMITDGSMAEEILQNGRADLIFIGRELLRDPFFARTAAKQLNTEI  327 (337)
T ss_dssp             HHHHHHHHHHCCEEEECSSCCSHHHHHHHHHTTSCSEEEECHHHHHCTTHHHHHHHHTTCCC
T ss_pred             HHHHHHHHhcCceEEEeCCcCCHHHHHHHHHCCCcceehhhHHHHhCchHHHHHHhhCCCCC
Confidence            56788999999999999999 89999999999999999999999999999999999987653

>d1ps9a1 c.1.4.1 (A:1-330) 2,4-dienoyl-CoA reductase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: 2,4-dienoyl-CoA reductase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.56  E-value=2.1e-15  Score=113.77  Aligned_cols=58  Identities=17%  Similarity=0.253  Sum_probs=54.4

Q ss_pred             hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHhhCCC
Q 046574           12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEFNAP   69 (104)
Q Consensus        12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~~g~~   69 (104)
                      ..++.+|+.+++|||++|+| +++.|+++|++|.+|+|++||+||+|||||+|+++|++
T Consensus       270 ~~~~~ik~~~~~pvi~~G~i~~~~~ae~~l~~g~~D~V~~gR~~iadP~~~~k~~~G~~  328 (330)
T d1ps9a1         270 WVTRKLKGHVSLPLVTTNRINDPQVADDILSRGDADMVSMARPFLADAELLSKAQSGRA  328 (330)
T ss_dssp             HHHHHHTTSCSSCEEECSSCCSHHHHHHHHHTTSCSEEEESTHHHHCTTHHHHHHTTCG
T ss_pred             HHHHHHHhhCCceEEEeCCCCCHHHHHHHHHCCCcchhHhhHHHHhChhHHHHHHccCc
Confidence            46678888899999999999 99999999999999999999999999999999999974

>d1ep3a_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Lactococcus lactis, isozyme B [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Dihydroorotate dehydrogenase
species: Lactococcus lactis, isozyme B [TaxId: 1358]

Probab=98.46  E-value=1.1e-07  Score=68.95  Aligned_cols=55  Identities=16%  Similarity=0.145  Sum_probs=48.5

Q ss_pred             HHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHhhCC
Q 046574           13 SLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEFNA   68 (104)
Q Consensus        13 ~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~~g~   68 (104)
                      ....+++.++.|||++||| |+++|.+.+..| +|+|.+||+++.+|.+..++.++.
T Consensus       232 ~i~~i~~~~~ipIig~GGI~s~~Da~~~i~~G-Ad~V~ig~~~~~~P~i~~~I~~~L  287 (311)
T d1ep3a_         232 LIHQVAQDVDIPIIGMGGVANAQDVLEMYMAG-ASAVAVGTANFADPFVCPKIIDKL  287 (311)
T ss_dssp             HHHHHHTTCSSCEEECSSCCSHHHHHHHHHHT-CSEEEECTHHHHCTTHHHHHHHHH
T ss_pred             HHHHHhhhcceeEEEeCCcCCHHHHHHHHHcC-CCEEEecHHHHcCChHHHHHHHHH
Confidence            4455777778899999999 999999999998 899999999999999999997754

>d1gtea2 c.1.4.1 (A:533-844) Dihydropyrimidine dehydrogenase, domain 4 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Dihydropyrimidine dehydrogenase, domain 4
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.07  E-value=4.4e-06  Score=60.78  Aligned_cols=55  Identities=15%  Similarity=0.192  Sum_probs=47.7

Q ss_pred             HHHHHHHHcC-CeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhC-CcHHHHHhhCC
Q 046574           13 SLLLMRKAFK-GTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLAN-PDLPRRFEFNA   68 (104)
Q Consensus        13 ~~~~ir~~~~-~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lan-Pdl~~ri~~g~   68 (104)
                      ....+++.++ .|||++||| +.+++.+.+..| +|+|.+|++++.+ |+++.++.++.
T Consensus       245 ~v~~~~~~~~~ipIi~~GGI~~~~d~~~~l~aG-A~~Vqv~ta~~~~G~~~i~~i~~~L  302 (312)
T d1gtea2         245 AVTTIARALPGFPILATGGIDSAESGLQFLHSG-ASVLQVCSAVQNQDFTVIQDYCTGL  302 (312)
T ss_dssp             HHHHHHHHSTTCCEEEESSCCSHHHHHHHHHTT-CSEEEESHHHHTSCTTHHHHHHHHH
T ss_pred             HHHHHHHHcCCCcEEEEcCCCCHHHHHHHHHcC-CCeeEECHhhhccChHHHHHHHHHH
Confidence            3456777775 699999999 999999999999 8999999999987 99999987764

>d1y0ea_ c.1.2.5 (A:) Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: NanE-like
domain: Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.04  E-value=4e-06  Score=57.17  Aligned_cols=47  Identities=13%  Similarity=0.129  Sum_probs=39.5

Q ss_pred             HHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHH
Q 046574           13 SLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLP   61 (104)
Q Consensus        13 ~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~   61 (104)
                      ....+++.+++|||+.||| |++++.++++.| +|.|.+|+++. +|+..
T Consensus       166 ~i~~~~~~~~iPVia~GGI~t~~d~~~~~~~G-AdgV~iGsAi~-rp~~~  213 (222)
T d1y0ea_         166 FLKDVLQSVDAKVIAEGNVITPDMYKRVMDLG-VHCSVVGGAIT-RPKEI  213 (222)
T ss_dssp             HHHHHHHHCCSEEEEESSCCSHHHHHHHHHTT-CSEEEECHHHH-CHHHH
T ss_pred             HHHHHHhcCCCcEEEeCCCCCHHHHHHHHHcC-CCEEEEchhhc-CHHHH
Confidence            3455667788999999999 999999999988 89999999765 66554

>d1juba_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Lactococcus lactis, isozyme A [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Dihydroorotate dehydrogenase
species: Lactococcus lactis, isozyme A [TaxId: 1358]

Probab=97.83  E-value=1.2e-05  Score=58.09  Aligned_cols=52  Identities=17%  Similarity=0.231  Sum_probs=44.8

Q ss_pred             HHHHHcC--CeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhC-CcHHHHHhhCC
Q 046574           16 LMRKAFK--GTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLAN-PDLPRRFEFNA   68 (104)
Q Consensus        16 ~ir~~~~--~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lan-Pdl~~ri~~g~   68 (104)
                      .+++.++  .|+|++||| |+++|.+.+..| +|+|.++++++.+ |+++.++.++.
T Consensus       234 ~i~~~~~~~~~Iig~GGI~s~~Da~~~i~aG-A~~Vql~tal~~~Gp~~i~~i~~~L  289 (311)
T d1juba_         234 AFYTRLKPEIQIIGTGGIETGQDAFEHLLCG-ATMLQIGTALHKEGPAIFDRIIKEL  289 (311)
T ss_dssp             HHHTTSCTTSEEEEESSCCSHHHHHHHHHHT-CSEEEECHHHHHHCTHHHHHHHHHH
T ss_pred             HHHHhcCCCeeEEecCCcCCHHHHHHHHHcC-CCceeeeHhhHhcChHHHHHHHHHH
Confidence            3445554  599999999 999999999999 7999999999866 99999998764

>d1vhna_ c.1.4.1 (A:) Putative flavin oxidoreducatase TM0096 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Putative flavin oxidoreducatase TM0096
species: Thermotoga maritima [TaxId: 2336]

Probab=97.74  E-value=1.4e-05  Score=58.56  Aligned_cols=45  Identities=20%  Similarity=0.269  Sum_probs=40.4

Q ss_pred             CCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHhh
Q 046574           22 KGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEF   66 (104)
Q Consensus        22 ~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~~   66 (104)
                      +.|||++|+| |.+++.++++...+|.|.+||+++.||-+-.++.+
T Consensus       179 ~ipvi~NGdI~s~~d~~~~l~~tg~dgVMiGRgal~nP~if~~i~~  224 (305)
T d1vhna_         179 RIPTFVSGDIFTPEDAKRALEESGCDGLLVARGAIGRPWIFKQIKD  224 (305)
T ss_dssp             SSCEEEESSCCSHHHHHHHHHHHCCSEEEESGGGTTCTTHHHHHHH
T ss_pred             hhhhhcccccccHHHHHHHHHhcCCCeEehhHHHHHhhhHhhhhhh
Confidence            4799999999 99999999987559999999999999999888753

>d1yxya1 c.1.2.5 (A:4-233) Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: NanE-like
domain: Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE
species: Streptococcus pyogenes [TaxId: 1314]

Probab=97.66  E-value=7.7e-05  Score=50.93  Aligned_cols=46  Identities=17%  Similarity=0.128  Sum_probs=38.8

Q ss_pred             HHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHH
Q 046574           14 LLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLP   61 (104)
Q Consensus        14 ~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~   61 (104)
                      ...+.+..++|||+.||| |++++.++++.| +|.|.+|+++ .+|+-.
T Consensus       175 ~~~~~~~~~ipvia~GGI~t~~d~~~al~~G-Ad~V~vGsAi-~~p~~i  221 (230)
T d1yxya1         175 LIEALCKAGIAVIAEGKIHSPEEAKKINDLG-VAGIVVGGAI-TRPKEI  221 (230)
T ss_dssp             HHHHHHHTTCCEEEESCCCSHHHHHHHHTTC-CSEEEECHHH-HCHHHH
T ss_pred             HHHHHhcCCCeEEEeCCCCCHHHHHHHHHcC-CCEEEEChhh-cCHHHH
Confidence            445556678899999999 999999999988 8999999975 578754

>d1tv5a1 c.1.4.1 (A:158-566) Dihydroorotate dehydrogenase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Dihydroorotate dehydrogenase
species: Plasmodium falciparum [TaxId: 5833]

Probab=97.64  E-value=3.3e-05  Score=58.56  Aligned_cols=55  Identities=15%  Similarity=0.104  Sum_probs=47.8

Q ss_pred             HHHHHHHHcC--CeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhC-CcHHHHHhhCC
Q 046574           13 SLLLMRKAFK--GTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLAN-PDLPRRFEFNA   68 (104)
Q Consensus        13 ~~~~ir~~~~--~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lan-Pdl~~ri~~g~   68 (104)
                      ....+++.++  .|+|++||| |+++|.+.+..| +|+|.++..++.+ |.++.+|..+.
T Consensus       331 ~v~~v~~~~~~~ipIIGvGGI~s~~Da~e~i~AG-As~VQv~T~li~~Gp~~v~~I~~~L  389 (409)
T d1tv5a1         331 FICEMYNYTNKQIPIIASGGIFSGLDALEKIEAG-ASVCQLYSCLVFNGMKSAVQIKREL  389 (409)
T ss_dssp             HHHHHHHHTTTCSCEEEESSCCSHHHHHHHHHTT-EEEEEESHHHHHHGGGHHHHHHHHH
T ss_pred             HHHHHHHHcCCCceEEEECCCCCHHHHHHHHHcC-CCHHhhhhHHHhcChHHHHHHHHHH
Confidence            3455777775  699999999 999999999999 8999999998765 99999998875

>d1f76a_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Dihydroorotate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=97.62  E-value=4.1e-05  Score=56.15  Aligned_cols=53  Identities=21%  Similarity=0.256  Sum_probs=45.8

Q ss_pred             HHHHHHHc--CCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHh-hCCcHHHHHhhC
Q 046574           14 LLLMRKAF--KGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFL-ANPDLPRRFEFN   67 (104)
Q Consensus        14 ~~~ir~~~--~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~l-anPdl~~ri~~g   67 (104)
                      ...+++.+  +.|+|++||| |.++|.+.+..| +++|.++..++ ..|.++.++.++
T Consensus       279 v~~v~~~~~~~ipIIG~GGI~s~~Da~e~i~aG-AsaVQv~Tal~~~Gp~ii~~I~~e  335 (336)
T d1f76a_         279 IRRLSLELNGRLPIIGVGGIDSVIAAREKIAAG-ASLVQIYSGFIFKGPPLIKEIVTH  335 (336)
T ss_dssp             HHHHHHHHTTSSCEEEESSCCSHHHHHHHHHHT-CSEEEESHHHHHHCHHHHHHHHHH
T ss_pred             HHHHHHHcCCCCeEEEECCCCCHHHHHHHHHcC-CcHHHHHHHHHhcChHHHHHHHhh
Confidence            34566666  4699999999 999999999999 79999999985 689999999864

>d1d3ga_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Dihydroorotate dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.58  E-value=7e-05  Score=55.48  Aligned_cols=55  Identities=18%  Similarity=0.200  Sum_probs=47.0

Q ss_pred             HHHHHHHHcC--CeEEEeCCC-CHHHHHHHHHcCCCcEEecchHH-hhCCcHHHHHhhCC
Q 046574           13 SLLLMRKAFK--GTFLVAGGY-DREDGNKAIAEGRADLVVYGRFF-LANPDLPRRFEFNA   68 (104)
Q Consensus        13 ~~~~ir~~~~--~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~-lanPdl~~ri~~g~   68 (104)
                      ....+++..+  .|+|++||| +.++|.+.+..| +|+|.++..+ ...|+++.++.++.
T Consensus       287 ~v~~v~~~~~~~ipIig~GGI~s~~Da~e~i~aG-As~VQi~Ta~~~~Gp~ii~~I~~~L  345 (367)
T d1d3ga_         287 TIREMYALTQGRVPIIGVGGVSSGQDALEKIRAG-ASLVQLYTALTFWGPPVVGKVKREL  345 (367)
T ss_dssp             HHHHHHHHTTTCSCEEEESSCCSHHHHHHHHHHT-CSEEEESHHHHHHCTHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCccEEEECCCCCHHHHHHHHHcC-CCHHHhhHHHHhcCcHHHHHHHHHH
Confidence            3345666564  699999999 999999999999 7999999997 57999999999875

>d2b4ga1 c.1.4.1 (A:2-313) Dihydroorotate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Dihydroorotate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=97.42  E-value=0.00012  Score=52.89  Aligned_cols=53  Identities=19%  Similarity=0.197  Sum_probs=45.3

Q ss_pred             HHHHHHcC-CeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhC-CcHHHHHhhCC
Q 046574           15 LLMRKAFK-GTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLAN-PDLPRRFEFNA   68 (104)
Q Consensus        15 ~~ir~~~~-~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lan-Pdl~~ri~~g~   68 (104)
                      ..+++.++ .++|++||| ++++|.+.+..| +|+|.++..++.+ |+++.++.++.
T Consensus       234 ~~~~~~~~~~~Iig~GGI~s~~Da~e~i~aG-As~Vqv~Tal~~~Gp~~i~~i~~~L  289 (312)
T d2b4ga1         234 NAFFRRCPDKLVFGCGGVYSGEEAFLHILAG-ASMVQVGTALHDEGPIIFARLNKEL  289 (312)
T ss_dssp             HHHHHHCTTSEEEEESSCCSHHHHHHHHHHT-EEEEEESHHHHHHCTTHHHHHHHHH
T ss_pred             HHHHHHcCCCceeecCCcCCHHHHHHHHHcC-CChheeehhhHhcCcHHHHHHHHHH
Confidence            34556665 479999999 899999999999 8999999999865 99999998875

>d1thfd_ c.1.2.1 (D:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Histidine biosynthesis enzymes
domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF
species: Thermotoga maritima [TaxId: 2336]

Probab=97.24  E-value=0.00038  Score=49.13  Aligned_cols=52  Identities=27%  Similarity=0.332  Sum_probs=46.1

Q ss_pred             HHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHhh
Q 046574           14 LLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEF   66 (104)
Q Consensus        14 ~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~~   66 (104)
                      ...+.+....|+...||+ +.++++.++..| +|-|.+|..++.||+++.++.+
T Consensus        66 i~~i~~~~~~pi~vgGGIr~~e~i~~~l~~G-a~kviigs~~~~n~~~l~~~~~  118 (253)
T d1thfd_          66 VEKVAEQIDIPFTVGGGIHDFETASELILRG-ADKVSINTAAVENPSLITQIAQ  118 (253)
T ss_dssp             HHHHHTTCCSCEEEESSCCSHHHHHHHHHTT-CSEEEESHHHHHCTHHHHHHHH
T ss_pred             HHHHHhccCccceeecccccchhhhhHHhcC-CCEEEEChHHhhChHHHHHHHH
Confidence            344555567799999999 999999999999 8999999999999999999976

>d1p4ca_ c.1.4.1 (A:) Membrane-associated (S)-mandelate dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Membrane-associated (S)-mandelate dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=97.18  E-value=0.00022  Score=51.94  Aligned_cols=44  Identities=30%  Similarity=0.307  Sum_probs=38.2

Q ss_pred             hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhh
Q 046574           12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLA   56 (104)
Q Consensus        12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~la   56 (104)
                      +.+..++...+.|||+.||| ++-++-++|.-| +|+|++|||+|-
T Consensus       265 ~~l~~i~~~~~~~viasGGIR~G~Dv~KALaLG-Ad~vgigrp~L~  309 (353)
T d1p4ca_         265 EVLAQSVAKTGKPVLIDSGFRRGSDIVKALALG-AEAVLLGRATLY  309 (353)
T ss_dssp             GTHHHHHHHHCSCEEECSSCCSHHHHHHHHHTT-CSCEEESHHHHH
T ss_pred             hcccchhcccccceeecCCcCchHHHHHHHHcC-CCEEEEcHHHHH
Confidence            34456677778899999999 999999999999 799999999994

>d1xi3a_ c.1.3.1 (A:) Thiamin phosphate synthase {Archaeon (Pyrococcus furiosus) [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Thiamin phosphate synthase
family: Thiamin phosphate synthase
domain: Thiamin phosphate synthase
species: Archaeon (Pyrococcus furiosus) [TaxId: 2261]

Probab=97.12  E-value=0.00038  Score=47.65  Aligned_cols=51  Identities=14%  Similarity=0.279  Sum_probs=43.3

Q ss_pred             hHHHHHHHHcCCeEEEeCCCCHHHHHHHHHcCCCcEEecchHHhhCCcHHHH
Q 046574           12 HSLLLMRKAFKGTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANPDLPRR   63 (104)
Q Consensus        12 ~~~~~ir~~~~~pvi~~Ggi~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~r   63 (104)
                      ..+..+.+..+.||++-|||+.+.+.++++.| +|.|++.+.++..+|....
T Consensus       143 ~~l~~~~~~~~~Pv~AiGGI~~~ni~~~~~~G-a~gvAvis~I~~~~dp~~~  193 (206)
T d1xi3a_         143 EGLRKIVESVKIPVVAIGGINKDNAREVLKTG-VDGIAVISAVMGAEDVRKA  193 (206)
T ss_dssp             HHHHHHHHHCSSCEEEESSCCTTTHHHHHTTT-CSEEEESHHHHTSSSHHHH
T ss_pred             HHHHHHHHhcCCCEEEECCCCHHHHHHHHHhC-CCEEEEhHHHHCCCCHHHH
Confidence            35556667778899999999999999999988 8999999999998886543

>d1ka9f_ c.1.2.1 (F:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Histidine biosynthesis enzymes
domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF
species: Thermus thermophilus [TaxId: 274]

Probab=96.97  E-value=0.00093  Score=46.99  Aligned_cols=52  Identities=25%  Similarity=0.287  Sum_probs=46.2

Q ss_pred             HHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHhh
Q 046574           14 LLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEF   66 (104)
Q Consensus        14 ~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~~   66 (104)
                      .+.+.+.+..|+...||| +.++++.+++.| +|-|.++..++.||++...+.+
T Consensus        66 i~~i~~~~~~pi~vgGGIrs~e~~~~ll~~G-a~kVii~s~~~~n~~~i~~~~~  118 (251)
T d1ka9f_          66 VARVAERVFIPLTVGGGVRSLEDARKLLLSG-ADKVSVNSAAVRRPELIRELAD  118 (251)
T ss_dssp             HHHHHTTCCSCEEEESSCCSHHHHHHHHHHT-CSEEEECHHHHHCTHHHHHHHH
T ss_pred             HHHHHhccCcchheeccccCHHHHHHHHHcC-CCEEEECchhhhCHHHHHHHHH
Confidence            344555566799999999 999999999999 8999999999999999999877

>d1h5ya_ c.1.2.1 (A:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Histidine biosynthesis enzymes
domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=96.95  E-value=0.0012  Score=46.59  Aligned_cols=53  Identities=28%  Similarity=0.299  Sum_probs=47.7

Q ss_pred             HHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHhh
Q 046574           13 SLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEF   66 (104)
Q Consensus        13 ~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~~   66 (104)
                      ..+.+.+....|+.+.||+ +.++++.++..| +|-|.++...+.||++..++.+
T Consensus        67 ~i~~i~~~~~~pi~~gGGIr~~e~~~~ll~~G-~~kVii~s~~~~~~~~~~~~~~  120 (252)
T d1h5ya_          67 SVKRVAEAVSIPVLVGGGVRSLEDATTLFRAG-ADKVSVNTAAVRNPQLVALLAR  120 (252)
T ss_dssp             HHHHHHHHCSSCEEEESSCCSHHHHHHHHHHT-CSEEEESHHHHHCTHHHHHHHH
T ss_pred             HHHHHHhhcCCcceeecccchhhhhhhHhhcC-CcEEEecccccCCcchHHHHHH
Confidence            4455666778899999999 999999999999 8999999999999999999877

>d1goxa_ c.1.4.1 (A:) Glycolate oxidase {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Glycolate oxidase
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=96.93  E-value=0.00073  Score=49.51  Aligned_cols=44  Identities=32%  Similarity=0.252  Sum_probs=37.3

Q ss_pred             hHHHHHHHHcC--CeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhh
Q 046574           12 HSLLLMRKAFK--GTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLA   56 (104)
Q Consensus        12 ~~~~~ir~~~~--~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~la   56 (104)
                      +.+..+++.++  .+||+.||| +.-++-++|.=| +|+|++|||+|.
T Consensus       267 ~~l~~i~~~~~~~~~iiadGGIR~G~Di~KALaLG-Ad~vgigrp~L~  313 (359)
T d1goxa_         267 MALEEVVKAAQGRIPVFLDGGVRRGTDVFKALALG-AAGVFIGRPVVF  313 (359)
T ss_dssp             HHHHHHHHHTTTSSCEEEESSCCSHHHHHHHHHHT-CSEEEECHHHHH
T ss_pred             hhchhhhhccCCccceeeccCcCcHHHHHHHHHcC-CCEEEEcHHHHH
Confidence            34556667664  499999999 999999999999 799999999984

>d1vzwa1 c.1.2.1 (A:2-240) Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Histidine biosynthesis enzymes
domain: Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA
species: Streptomyces coelicolor [TaxId: 1902]

Probab=96.91  E-value=0.0012  Score=45.93  Aligned_cols=54  Identities=20%  Similarity=0.237  Sum_probs=49.3

Q ss_pred             hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHhh
Q 046574           12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEF   66 (104)
Q Consensus        12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~~   66 (104)
                      ...+.+.+...+|+.+.||| +.++++.+++.| +|-|.++..++.||++.+++..
T Consensus        64 ~~i~~i~~~~~~pi~vGGGIrs~~~~~~ll~~G-a~kVvi~s~~~~~~~~~~~~~~  118 (239)
T d1vzwa1          64 ALIAEVAQAMDIKVELSGGIRDDDTLAAALATG-CTRVNLGTAALETPEWVAKVIA  118 (239)
T ss_dssp             HHHHHHHHHCSSEEEEESSCCSHHHHHHHHHTT-CSEEEECHHHHHCHHHHHHHHH
T ss_pred             HHHHHHHhhcCcceEeecccccchhhhhhhccc-cccchhhHHhhhccccchhhhc
Confidence            46677888888999999999 999999999999 7999999999999999998876

>d1tb3a1 c.1.4.1 (A:1-349) Hydroxyacid oxidase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Hydroxyacid oxidase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.90  E-value=0.00073  Score=49.64  Aligned_cols=43  Identities=33%  Similarity=0.331  Sum_probs=37.3

Q ss_pred             hHHHHHHHHcC--CeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHh
Q 046574           12 HSLLLMRKAFK--GTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFL   55 (104)
Q Consensus        12 ~~~~~ir~~~~--~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~l   55 (104)
                      +.+..+++.++  .|||+.||| +..++-++|.-| +|+|++|||+|
T Consensus       260 ~~l~~i~~~~~~~~~iiadGGIR~G~Dv~KALALG-A~~V~igrp~L  305 (349)
T d1tb3a1         260 DALREVVAAVKGKIEVYMDGGVRTGTDVLKALALG-ARCIFLGRPIL  305 (349)
T ss_dssp             HHHHHHHHHHTTSSEEEEESSCCSHHHHHHHHHTT-CSCEEESHHHH
T ss_pred             hhcceeeeccCCCeeEEeccCcCcHHHHHHHHHcC-CCEEEEChHHH
Confidence            45566777775  499999999 999999999999 79999999998

>d1p0ka_ c.1.4.1 (A:) Isopentenyl-diphosphate delta-isomerase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Isopentenyl-diphosphate delta-isomerase
species: Bacillus subtilis [TaxId: 1423]

Probab=96.74  E-value=0.0016  Score=46.86  Aligned_cols=40  Identities=38%  Similarity=0.492  Sum_probs=34.0

Q ss_pred             HHHHHc-CCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhh
Q 046574           16 LMRKAF-KGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLA   56 (104)
Q Consensus        16 ~ir~~~-~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~la   56 (104)
                      .++... ++|||+.||| +..++-++|.-| +|+|.+||+++-
T Consensus       224 ~~~~~~~~v~viadGGIr~g~Dv~KAlalG-AdaV~iGr~~l~  265 (329)
T d1p0ka_         224 EIRSEFPASTMIASGGLQDALDVAKAIALG-ASCTGMAGHFLK  265 (329)
T ss_dssp             HHHHHCTTSEEEEESSCCSHHHHHHHHHTT-CSEEEECHHHHH
T ss_pred             HHHhhcCCceEEEcCCcccHHHHHHHHHcC-CCchhccHHHHH
Confidence            344444 4699999999 999999999999 899999999873

>d1jvna1 c.1.2.1 (A:230-552) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Baker's yeast (Saccharomyces cerevisiae), His7 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Histidine biosynthesis enzymes
domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF
species: Baker's yeast (Saccharomyces cerevisiae), His7 [TaxId: 4932]

Probab=96.69  E-value=0.002  Score=47.47  Aligned_cols=48  Identities=19%  Similarity=0.142  Sum_probs=42.2

Q ss_pred             hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCc
Q 046574           12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPD   59 (104)
Q Consensus        12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPd   59 (104)
                      +..+.+++.+++|||++||+ +.+...+++..+.++.|++|+.|--.-.
T Consensus       254 el~~~i~~~~~iPiIasGGi~s~~di~~ll~~~~v~gv~~gs~~~~~~~  302 (323)
T d1jvna1         254 ELIEHVKDAVKIPVIASSGAGVPEHFEEAFLKTRADACLGAGMFHRGEF  302 (323)
T ss_dssp             HHHHHHHHHCSSCEEECSCCCSHHHHHHHHHHSCCSEEEESHHHHTTSC
T ss_pred             hHHHHHHHhCCCCEEEECCCCCHHHHHHHHHhCCCeEEEEhhHHHcCCC
Confidence            56778888899999999999 9999999999888999999999975533

>d1vcfa1 c.1.4.1 (A:23-332) Isopentenyl-diphosphate delta-isomerase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Isopentenyl-diphosphate delta-isomerase
species: Thermus thermophilus [TaxId: 274]

Probab=96.69  E-value=0.0014  Score=46.33  Aligned_cols=41  Identities=37%  Similarity=0.549  Sum_probs=34.5

Q ss_pred             HHHHHHc-CCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhh
Q 046574           15 LLMRKAF-KGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLA   56 (104)
Q Consensus        15 ~~ir~~~-~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~la   56 (104)
                      ..+++.. ++|||+.||| +..++-++|.-| +|+|.+||+++.
T Consensus       226 ~~~~~~~~~i~Ii~dGGIr~g~Dv~KALalG-AdaV~iGr~~l~  268 (310)
T d1vcfa1         226 LEVREVLPHLPLVASGGVYTGTDGAKALALG-ADLLAVARPLLR  268 (310)
T ss_dssp             HHHHHHCSSSCEEEESSCCSHHHHHHHHHHT-CSEEEECGGGHH
T ss_pred             HHHHhhcCCCeEEeCCCCCchHHHHHHHHhC-CCEeeEhHHHHH
Confidence            3444544 4699999999 999999999999 899999999973

>d2tpsa_ c.1.3.1 (A:) Thiamin phosphate synthase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Thiamin phosphate synthase
family: Thiamin phosphate synthase
domain: Thiamin phosphate synthase
species: Bacillus subtilis [TaxId: 1423]

Probab=96.42  E-value=0.0034  Score=43.50  Aligned_cols=50  Identities=18%  Similarity=0.162  Sum_probs=41.4

Q ss_pred             hHHHHHHH-HcCCeEEEeCCCCHHHHHHHHHcCCCcEEecchHHhhCCcHHH
Q 046574           12 HSLLLMRK-AFKGTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANPDLPR   62 (104)
Q Consensus        12 ~~~~~ir~-~~~~pvi~~Ggi~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~   62 (104)
                      ...+.+++ .++.||++-|||+++.+.+++..| +|.|++.+.++..+|-..
T Consensus       160 ~~~~~~~~~~~~~Pv~AiGGI~~~ni~~l~~~G-a~giAvis~I~~a~dp~~  210 (226)
T d2tpsa_         160 SLIEAVRRQGISIPIVGIGGITIDNAAPVIQAG-ADGVSMISAISQAEDPES  210 (226)
T ss_dssp             HHHHHHHHTTCCCCEEEESSCCTTTSHHHHHTT-CSEEEESHHHHTSSCHHH
T ss_pred             chhHHHHHhcCCCCEEEecCCCHHHHHHHHHhC-CCEEEEhHHhhcCCCHHH
Confidence            34455554 457899999999999999999998 899999999999888643

>d1kbia1 c.1.4.1 (A:98-511) Flavocytochrome b2, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Flavocytochrome b2, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.21  E-value=0.0022  Score=48.07  Aligned_cols=33  Identities=39%  Similarity=0.379  Sum_probs=30.8

Q ss_pred             CeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhh
Q 046574           23 GTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLA   56 (104)
Q Consensus        23 ~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~la   56 (104)
                      .+||+.||| +.-++-++|.=| +|+|++|||+|.
T Consensus       307 ~~viadGGIR~G~DVaKALALG-AdaVgigrp~L~  340 (414)
T d1kbia1         307 LEVFVDGGVRRGTDVLKALCLG-AKGVGLGRPFLY  340 (414)
T ss_dssp             BEEEEESSCCSHHHHHHHHHHT-CSEEEECHHHHH
T ss_pred             eeEEecCCcCcHHHHHHHHHcC-CCEEEEcHHHHH
Confidence            599999999 999999999999 799999999994

>d1jvna1 c.1.2.1 (A:230-552) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Baker's yeast (Saccharomyces cerevisiae), His7 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Histidine biosynthesis enzymes
domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF
species: Baker's yeast (Saccharomyces cerevisiae), His7 [TaxId: 4932]

Probab=96.11  E-value=0.0024  Score=47.07  Aligned_cols=47  Identities=23%  Similarity=0.177  Sum_probs=38.3

Q ss_pred             HHHHcCCeEEEeCCC-C-----------HHHHHHHHHcCCCcEEecchHHhhCCcHHHHH
Q 046574           17 MRKAFKGTFLVAGGY-D-----------REDGNKAIAEGRADLVVYGRFFLANPDLPRRF   64 (104)
Q Consensus        17 ir~~~~~pvi~~Ggi-~-----------~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri   64 (104)
                      +.+...+||...||| +           .++|.++++.| +|-|.++..++.||+++..+
T Consensus        90 i~~~~~vPi~vGGGIrsi~di~~~~~~~~e~A~~ll~~G-adKVvI~T~ai~~p~~~~e~  148 (323)
T d1jvna1          90 AAKTVFVPLTVGGGIKDIVDVDGTKIPALEVASLYFRSG-ADKVSIGTDAVYAAEKYYEL  148 (323)
T ss_dssp             HTTTCCSCEEEESSCSCEECTTCCEECHHHHHHHHHHHT-CSEEEECHHHHHHHHHHHHT
T ss_pred             hccccceeEEEecCcccHHHhhhccchhhHHHHHHHHcC-CCeEEechHHhhChHHHHHH
Confidence            334456799999999 6           46799999999 89999999999877766554

>d1qopa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Tryptophan biosynthesis enzymes
domain: Trp synthase alpha-subunit
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.08  E-value=0.0063  Score=43.56  Aligned_cols=46  Identities=17%  Similarity=0.172  Sum_probs=40.0

Q ss_pred             cchHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhh
Q 046574           10 CPHSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLA   56 (104)
Q Consensus        10 ~~~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~la   56 (104)
                      ..+..+.+|+..+.||++.-|| +++++.++++.+ +|.|.+|.+++.
T Consensus       193 ~~~~i~~ik~~t~~Pv~vGFGI~~~e~v~~~~~~~-ADGvIVGSAivk  239 (267)
T d1qopa_         193 LHHLIEKLKEYHAAPALQGFGISSPEQVSAAVRAG-AAGAISGSAIVK  239 (267)
T ss_dssp             CHHHHHHHHHTTCCCEEEESSCCSHHHHHHHHHTT-CSEEEECHHHHH
T ss_pred             HHHHHHHHhhhccCCceeecccCCHHHHHHHHhcC-CCEEEECHHHHH
Confidence            3467788999999999999999 999999998877 899999998763

>d1ka9f_ c.1.2.1 (F:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Histidine biosynthesis enzymes
domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF
species: Thermus thermophilus [TaxId: 274]

Probab=96.01  E-value=0.011  Score=41.27  Aligned_cols=53  Identities=15%  Similarity=0.135  Sum_probs=42.8

Q ss_pred             hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHh
Q 046574           12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLPRRFE   65 (104)
Q Consensus        12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~   65 (104)
                      +..+.+.+..+.|+|++||+ +.++..++...| ++.|.+|+.|...-.-+..++
T Consensus       185 ~l~~~i~~~~~~pii~~GGv~~~~dl~~l~~~g-~~gviig~al~~g~~~~~~~k  238 (251)
T d1ka9f_         185 RLTRMVAEAVGVPVIASGGAGRMEHFLEAFQAG-AEAALAASVFHFGEIPIPKLK  238 (251)
T ss_dssp             HHHHHHHHHCSSCEEEESCCCSHHHHHHHHHTT-CSEEEESHHHHTTSSCHHHHH
T ss_pred             hHHHHHHhhcceeEEEecCCCCHHHHHHHHHCC-CCEEEEhHHHHcCCCCHHHHH
Confidence            46677888889999999999 899999999877 799999998876554444443

>d1vrda1 c.1.5.1 (A:1-85,A:213-457) Inosine monophosphate dehydrogenase (IMPDH) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Inosine monophosphate dehydrogenase (IMPDH)
family: Inosine monophosphate dehydrogenase (IMPDH)
domain: Inosine monophosphate dehydrogenase (IMPDH)
species: Thermotoga maritima [TaxId: 2336]

Probab=95.79  E-value=0.009  Score=43.78  Aligned_cols=47  Identities=26%  Similarity=0.429  Sum_probs=40.6

Q ss_pred             HHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHHHHH
Q 046574           17 MRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLPRRF   64 (104)
Q Consensus        17 ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri   64 (104)
                      .++.+++|||+.||| +.-.+-++|.-| +|+|.+|..|....+-|-+.
T Consensus       196 ~~~~~~vpvIAdGGi~~~gdiakAla~G-Ad~Vm~Gs~fa~~~E~pg~~  243 (330)
T d1vrda1         196 VARKYDVPIIADGGIRYSGDIVKALAAG-AESVMVGSIFAGTEEAPGET  243 (330)
T ss_dssp             HHHTTTCCEEEESCCCSHHHHHHHHHTT-CSEEEESHHHHTBTTSSSEE
T ss_pred             HHHhcCceEEecCCcccCCchheeeecc-CceeeecchheeecccCccE
Confidence            455667899999999 999999999999 79999999999988776543

>d1geqa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Tryptophan biosynthesis enzymes
domain: Trp synthase alpha-subunit
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=95.60  E-value=0.013  Score=41.43  Aligned_cols=44  Identities=25%  Similarity=0.253  Sum_probs=39.3

Q ss_pred             chHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHh
Q 046574           11 PHSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFL   55 (104)
Q Consensus        11 ~~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~l   55 (104)
                      .+..+++|+..+.||++.-|| +++++.+++..+ +|.|.+|..++
T Consensus       180 ~~~v~~vk~~t~~Pv~vGFGI~~~e~v~~~~~~~-ADGvIVGSaiv  224 (248)
T d1geqa_         180 YDLLRRAKRICRNKVAVGFGVSKREHVVSLLKEG-ANGVVVGSALV  224 (248)
T ss_dssp             HHHHHHHHHHCSSCEEEESCCCSHHHHHHHHHTT-CSEEEECHHHH
T ss_pred             HHHHHHHhhhcccceeeecccCCHHHHHHHHhcC-CCEEEECHHHH
Confidence            356788999988999999999 999999999877 89999999886

>d1vzwa1 c.1.2.1 (A:2-240) Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Histidine biosynthesis enzymes
domain: Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA
species: Streptomyces coelicolor [TaxId: 1902]

Probab=95.49  E-value=0.0085  Score=41.41  Aligned_cols=46  Identities=15%  Similarity=0.192  Sum_probs=37.5

Q ss_pred             hHHHHHHHHcCCeEEEeCCC-CHHHHHHH--HHcCCCcEEecchHHhhC
Q 046574           12 HSLLLMRKAFKGTFLVAGGY-DREDGNKA--IAEGRADLVVYGRFFLAN   57 (104)
Q Consensus        12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~--l~~g~~DlVa~gR~~lan   57 (104)
                      +..+.+++..+.|+|++||+ +.++.+++  +....+|.|.+|+.|...
T Consensus       179 ~l~~~i~~~~~~pvi~sGGv~s~~Di~~l~~l~~~g~~gvivg~al~~g  227 (239)
T d1vzwa1         179 ELLKNVCAATDRPVVASGGVSSLDDLRAIAGLVPAGVEGAIVGKALYAK  227 (239)
T ss_dssp             HHHHHHHHTCSSCEEEESCCCSHHHHHHHHTTGGGTEEEEEECHHHHTT
T ss_pred             hhhhhhhhccCceEEEECCCCCHHHHHHHHhhhhCCccEeeEhHHHHCC
Confidence            46677888889999999999 89998777  544459999999988654

>d1h5ya_ c.1.2.1 (A:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Histidine biosynthesis enzymes
domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=95.48  E-value=0.023  Score=39.64  Aligned_cols=47  Identities=21%  Similarity=0.202  Sum_probs=40.2

Q ss_pred             hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCc
Q 046574           12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPD   59 (104)
Q Consensus        12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPd   59 (104)
                      +..+.+++..+.|++++||+ +.++.+++...| ++.|++|+.|..+--
T Consensus       187 ~~~~~i~~~~~~pii~~GGv~~~~di~~l~~~g-~~gv~~gs~l~~~~~  234 (252)
T d1h5ya_         187 ELIRRVADSVRIPVIASGGAGRVEHFYEAAAAG-ADAVLAASLFHFRVL  234 (252)
T ss_dssp             HHHHHHHHHCSSCEEEESCCCSHHHHHHHHHTT-CSEEEESHHHHTTSS
T ss_pred             HHHHHHHHhcCCCEEEecCCCCHHHHHHHHHCC-CCEEEEhhHHHcCCC
Confidence            56778888888999999999 899999988877 899999998875543

>d1thfd_ c.1.2.1 (D:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Histidine biosynthesis enzymes
domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF
species: Thermotoga maritima [TaxId: 2336]

Probab=95.42  E-value=0.02  Score=39.84  Aligned_cols=46  Identities=20%  Similarity=0.211  Sum_probs=39.3

Q ss_pred             hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCC
Q 046574           12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANP   58 (104)
Q Consensus        12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanP   58 (104)
                      +..+.+++..+.|+|++||+ +.++..++...| ++.|.+|+.|..+-
T Consensus       185 ~ll~~i~~~~~~pvi~~GGv~s~~di~~l~~~g-~~gvivgsal~~~~  231 (253)
T d1thfd_         185 EMIRFVRPLTTLPIIASGGAGKMEHFLEAFLAG-ADAALAASVFHFRE  231 (253)
T ss_dssp             HHHHHHGGGCCSCEEEESCCCSHHHHHHHHHTT-CSEEEESHHHHTTC
T ss_pred             cccccccccccceEEEecCCCCHHHHHHHHHCC-CCEEEEchHHHcCC
Confidence            45667777778899999999 899999999887 89999999987664

>d1h1ya_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Rice (Oryza sativa) [TaxId: 4530]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: D-ribulose-5-phosphate 3-epimerase
domain: D-ribulose-5-phosphate 3-epimerase
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=95.31  E-value=0.029  Score=38.61  Aligned_cols=51  Identities=20%  Similarity=0.269  Sum_probs=41.7

Q ss_pred             HHHHHHHcC-CeEEEeCCCCHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHh
Q 046574           14 LLLMRKAFK-GTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANPDLPRRFE   65 (104)
Q Consensus        14 ~~~ir~~~~-~pvi~~Ggi~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~   65 (104)
                      .+.+|+... ..+.+-||++.+.+..+.+.| +|.+..|..+..++|..+.+.
T Consensus       159 I~~l~~~~~~~~I~VDGGIn~~~i~~l~~aG-ad~~V~GS~if~~~d~~~~i~  210 (220)
T d1h1ya_         159 VRALRKKYPSLDIEVDGGLGPSTIDVAASAG-ANCIVAGSSIFGAAEPGEVIS  210 (220)
T ss_dssp             HHHHHHHCTTSEEEEESSCSTTTHHHHHHHT-CCEEEESHHHHTSSCHHHHHH
T ss_pred             HHHHHhcCCCceEEEEecCCHHHHHHHHHCC-CCEEEECHHHHCCCCHHHHHH
Confidence            344555443 588889999999999999999 799999999999999876554

>d1qo2a_ c.1.2.1 (A:) Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Histidine biosynthesis enzymes
domain: Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA
species: Thermotoga maritima [TaxId: 2336]

Probab=95.28  E-value=0.021  Score=39.41  Aligned_cols=44  Identities=14%  Similarity=0.187  Sum_probs=40.6

Q ss_pred             CCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHhh
Q 046574           22 KGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEF   66 (104)
Q Consensus        22 ~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~~   66 (104)
                      ..|+-..||| +.++++.+++.| +|-|.++..++.||++...+..
T Consensus        73 ~~pl~~gGGI~s~~~~~~~~~~G-a~kVvi~s~~~~~~~~~~~~~~  117 (241)
T d1qo2a_          73 AEHIQIGGGIRSLDYAEKLRKLG-YRRQIVSSKVLEDPSFLKSLRE  117 (241)
T ss_dssp             GGGEEEESSCCSHHHHHHHHHTT-CCEEEECHHHHHCTTHHHHHHT
T ss_pred             ccchhhhhhhhhhhhhhhccccc-cceEecCcccccCchhhhhhcc
Confidence            3599999999 999999999999 7999999999999999988765

>d1tqxa_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: D-ribulose-5-phosphate 3-epimerase
domain: D-ribulose-5-phosphate 3-epimerase
species: Plasmodium falciparum [TaxId: 5833]

Probab=95.12  E-value=0.073  Score=36.44  Aligned_cols=50  Identities=24%  Similarity=0.387  Sum_probs=40.9

Q ss_pred             HHHHHHHcC-CeEEEeCCCCHHHHHHHHHcCCCcEEecchHHhhCCcHHHHH
Q 046574           14 LLLMRKAFK-GTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANPDLPRRF   64 (104)
Q Consensus        14 ~~~ir~~~~-~pvi~~Ggi~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri   64 (104)
                      .+.+|+... ..+.+-||++.+.+..+.+.| +|.+..|+.+..++|....+
T Consensus       161 I~~lr~~~~~~~I~VDGGIn~~~i~~l~~aG-ad~iV~GS~if~~~d~~~~i  211 (221)
T d1tqxa_         161 VSFLRKKYKNLNIQVDGGLNIETTEISASHG-ANIIVAGTSIFNAEDPKYVI  211 (221)
T ss_dssp             HHHHHHHCTTCEEEEESSCCHHHHHHHHHHT-CCEEEESHHHHTCSSHHHHH
T ss_pred             HHHHHHhcCCcceEEEcccCHHhHHHHHHcC-CCEEEEChHHHCCCCHHHHH
Confidence            345666654 467777999999999999999 79999999999999976544

>d1hg3a_ c.1.1.1 (A:) Triosephosphate isomerase {Archaeon Pyrococcus woesei [TaxId: 2262]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Triosephosphate isomerase (TIM)
family: Triosephosphate isomerase (TIM)
domain: Triosephosphate isomerase
species: Archaeon Pyrococcus woesei [TaxId: 2262]

Probab=95.03  E-value=0.053  Score=36.87  Aligned_cols=43  Identities=23%  Similarity=0.149  Sum_probs=37.5

Q ss_pred             CCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHh
Q 046574           22 KGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLPRRFE   65 (104)
Q Consensus        22 ~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~   65 (104)
                      ++||+..||+ +++.++.++..| +|.|.+|.+.+.-+|+.+.++
T Consensus       175 ~v~vlygGsV~~~n~~~~~~~~g-~dGvLVGsAsl~a~d~~~~~~  218 (224)
T d1hg3a_         175 EVKVLCGAGISTGEDVKKAIELG-TVGVLLASGVTKAKDPEKAIW  218 (224)
T ss_dssp             TSEEEEESSCCSHHHHHHHHHTT-CSEEEESHHHHTCSSHHHHHH
T ss_pred             ccceEEeCCcCCHHHHHHHHhCC-CCEEEEcceeecCcCHHHHHH
Confidence            3599999999 788888888887 899999999999999887765

>d1qo2a_ c.1.2.1 (A:) Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Histidine biosynthesis enzymes
domain: Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA
species: Thermotoga maritima [TaxId: 2336]

Probab=95.00  E-value=0.024  Score=39.10  Aligned_cols=46  Identities=24%  Similarity=0.231  Sum_probs=37.8

Q ss_pred             hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHH-----cCCCcEEecchHHhhC
Q 046574           12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIA-----EGRADLVVYGRFFLAN   57 (104)
Q Consensus        12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~-----~g~~DlVa~gR~~lan   57 (104)
                      +..+.+++..+.|||++||+ +.++.+++.+     .+.++.|.+|+.|...
T Consensus       178 ~l~~~i~~~~~~pvi~~GGv~s~~di~~l~~ig~~~~~~~~gvivG~al~~g  229 (241)
T d1qo2a_         178 SLTKKIAIEAEVKVLAAGGISSENSLKTAQKVHTETNGLLKGVIVGRAFLEG  229 (241)
T ss_dssp             HHHHHHHHHHTCEEEEESSCCSHHHHHHHHHHHHHTTTSEEEEEECHHHHTT
T ss_pred             hhhhhhhccCCceEEEECCCCCHHHHHHHHHccccccCCEeeEEEHHHHHCC
Confidence            46677888889999999999 9999888865     3458999999998543

>d1a53a_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Tryptophan biosynthesis enzymes
domain: Indole-3-glycerophosphate synthase, IPGS
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=94.89  E-value=0.057  Score=38.12  Aligned_cols=50  Identities=14%  Similarity=0.228  Sum_probs=40.8

Q ss_pred             HHHHHHHcC--CeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHHHHH
Q 046574           14 LLLMRKAFK--GTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLPRRF   64 (104)
Q Consensus        14 ~~~ir~~~~--~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri   64 (104)
                      ...+.+.+.  .++|+-+|| ++++++.+.+.| +|.|.+|-.++.+||-...+
T Consensus       193 ~~~L~~~ip~~~~~IaESGI~t~~dv~~l~~~G-~davLIGeaLmk~~d~~kel  245 (247)
T d1a53a_         193 QRKLISMIPSNVVKVAESGISERNEIEELRKLG-VNAFLIGSSLMRNPEKIKEF  245 (247)
T ss_dssp             HHHHHHHSCTTSEEEEESCCCCHHHHHHHHHTT-CCEEEECHHHHHCTTHHHHH
T ss_pred             HHHHHhhCCCCCeEEEecCCCCHHHHHHHHHCC-CCEEEECHHHcCCCchhhHh
Confidence            344556663  488999999 999999988888 89999999999999965544

>d1jr1a1 c.1.5.1 (A:17-112,A:233-514) Inosine monophosphate dehydrogenase (IMPDH) {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Inosine monophosphate dehydrogenase (IMPDH)
family: Inosine monophosphate dehydrogenase (IMPDH)
domain: Inosine monophosphate dehydrogenase (IMPDH)
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=94.87  E-value=0.017  Score=43.06  Aligned_cols=47  Identities=26%  Similarity=0.434  Sum_probs=40.5

Q ss_pred             HHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHHHHH
Q 046574           17 MRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLPRRF   64 (104)
Q Consensus        17 ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri   64 (104)
                      .++.+++|||+.||| +.-++-++|.-| +|+|.+|..|....+-|-++
T Consensus       217 ~a~~~~vpIIADGGi~~~gdiakAla~G-Ad~VMmGs~fAgt~EspG~~  264 (378)
T d1jr1a1         217 YARRFGVPVIADGGIQNVGHIAKALALG-ASTVMMGSLLAATTEAPGEY  264 (378)
T ss_dssp             HHGGGTCCEEEESCCCSHHHHHHHHHTT-CSEEEESTTTTTBTTSSSCC
T ss_pred             hhcccCCceecccccccCCceeeEEEee-cceeeecceeeeeecccCcc
Confidence            445567899999999 899999999999 79999999999888777543

>d1rd5a_ c.1.2.4 (A:) Trp synthase alpha-subunit {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Tryptophan biosynthesis enzymes
domain: Trp synthase alpha-subunit
species: Maize (Zea mays) [TaxId: 4577]

Probab=94.82  E-value=0.032  Score=39.60  Aligned_cols=43  Identities=21%  Similarity=0.187  Sum_probs=38.3

Q ss_pred             hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHh
Q 046574           12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFL   55 (104)
Q Consensus        12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~l   55 (104)
                      +..+.+|+..+.||++.-|| ++++++++.+.| +|.|.+|..++
T Consensus       190 ~~i~~ik~~t~~Pi~vGFGI~~~e~v~~~~~~g-aDGvIVGSaiv  233 (261)
T d1rd5a_         190 SLIQEVKKVTNKPVAVGFGISKPEHVKQIAQWG-ADGVIIGSAMV  233 (261)
T ss_dssp             HHHHHHHHHCSSCEEEESCCCSHHHHHHHHHTT-CSEEEECHHHH
T ss_pred             HHHHHhhhccCCCeEEEcCCCCHHHHHHHHhcC-CCEEEECHHHH
Confidence            46678999988999999999 999999998766 79999999876

>d1q6oa_ c.1.2.3 (A:) 3-keto-L-gulonate 6-phosphate decarboxylase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Decarboxylase
domain: 3-keto-L-gulonate 6-phosphate decarboxylase
species: Escherichia coli [TaxId: 562]

Probab=94.67  E-value=0.011  Score=38.90  Aligned_cols=51  Identities=14%  Similarity=0.064  Sum_probs=40.1

Q ss_pred             hHHHHHHHHc--CCeEEEeCCCCHHHHHHHHHcCCCcEEecchHHhhCCcHHHH
Q 046574           12 HSLLLMRKAF--KGTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANPDLPRR   63 (104)
Q Consensus        12 ~~~~~ir~~~--~~pvi~~Ggi~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~r   63 (104)
                      ..+..+++..  +.+++..||++++.+.++++.| +|.+.+||+.....|-.+.
T Consensus       149 ~~l~~i~~~~~~~~~i~~~gGi~~~~~~~~~~~G-ad~iVVGr~I~~a~dp~~a  201 (213)
T d1q6oa_         149 ADITAIKRLSDMGFKVTVTGGLALEDLPLFKGIP-IHVFIAGRSIRDAASPVEA  201 (213)
T ss_dssp             HHHHHHHHHHHTTCEEEEESSCCGGGGGGGTTSC-CSEEEESHHHHTSSCHHHH
T ss_pred             HHHHHHHHhhccCceEecCCCcCcCCHHHHHHcC-CCEEEEChhhcCCCCHHHH
Confidence            4555666654  4588899999999999999888 8999999999987774433

>d1w0ma_ c.1.1.1 (A:) Triosephosphate isomerase {Thermoproteus tenax [TaxId: 2271]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Triosephosphate isomerase (TIM)
family: Triosephosphate isomerase (TIM)
domain: Triosephosphate isomerase
species: Thermoproteus tenax [TaxId: 2271]

Probab=94.60  E-value=0.079  Score=36.15  Aligned_cols=49  Identities=16%  Similarity=0.207  Sum_probs=37.3

Q ss_pred             HHHHHHc-CCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHHHHH
Q 046574           15 LLMRKAF-KGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLPRRF   64 (104)
Q Consensus        15 ~~ir~~~-~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri   64 (104)
                      +.+++.. +.||+..||+ +.+.++.+++.| +|.|.+|.+.+..+|.-..+
T Consensus       165 ~~~~~~~~~i~vlygGgV~~~n~~~~~~~~g-~dGvLVGsA~l~a~d~~~~i  215 (226)
T d1w0ma_         165 GLVSRHFPEVSVITGAGIESGDDVAAALRLG-TRGVLLASAAVKAKDPYAKI  215 (226)
T ss_dssp             HHHHHHCTTSEEEEESSCCSHHHHHHHHHTT-CSEEEECHHHHTCSSHHHHH
T ss_pred             hhhhccCCCceEEEecCcCChHHHHHHhcCC-CCEEEechheecCCCHHHHH
Confidence            3344444 4699999999 677777788777 89999999999988854443

>d1viza_ c.1.4.1 (A:) PcrB protein homolog YerE {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: PcrB protein homolog YerE
species: Bacillus subtilis [TaxId: 1423]

Probab=94.54  E-value=0.029  Score=38.66  Aligned_cols=46  Identities=24%  Similarity=0.398  Sum_probs=36.9

Q ss_pred             hHHHHHHHHcC-CeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCc
Q 046574           12 HSLLLMRKAFK-GTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPD   59 (104)
Q Consensus        12 ~~~~~ir~~~~-~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPd   59 (104)
                      +....+++... .||++.+|| ++++|.++. ++ +|.|.+|..+..+++
T Consensus       170 ~~~~~v~~~~~~~Pl~VGFGIst~e~a~~v~-~~-ADgVVVGSAiv~~ie  217 (229)
T d1viza_         170 EAVKKTKAVLETSTLFYGGGIKDAETAKQYA-EH-ADVIVVGNAVYEDFD  217 (229)
T ss_dssp             HHHHHHHHTCSSSEEEEESSCCSHHHHHHHH-TT-CSEEEECTHHHHCHH
T ss_pred             hhHHHHHhhccCcceEEEcccCCHHHHHHHH-cC-CCEEEECHHHHhhHH
Confidence            44556666655 699999999 999998876 55 899999999987665

>d1zfja1 c.1.5.1 (A:2-94,A:221-492) Inosine monophosphate dehydrogenase (IMPDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Inosine monophosphate dehydrogenase (IMPDH)
family: Inosine monophosphate dehydrogenase (IMPDH)
domain: Inosine monophosphate dehydrogenase (IMPDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=94.28  E-value=0.03  Score=41.53  Aligned_cols=46  Identities=26%  Similarity=0.478  Sum_probs=40.0

Q ss_pred             HHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHHHH
Q 046574           17 MRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLPRR   63 (104)
Q Consensus        17 ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~r   63 (104)
                      .+..+++|||+.||| +.-++-++|.-| +|+|.+|..|....+-|-+
T Consensus       205 ~~~~~~~~iIADGGi~~~GDi~KAla~G-Ad~VMlG~~lAg~~EsPG~  251 (365)
T d1zfja1         205 VAREYGKTIIADGGIKYSGDIVKALAAG-GNAVMLGSMFAGTDEAPGE  251 (365)
T ss_dssp             HHHHTTCEEEEESCCCSHHHHHHHHHTT-CSEEEESTTTTTBSSCCCC
T ss_pred             HHHhCCceEEecCCcCcchhhhhhhhcc-CCEEEecchhccccCCCCc
Confidence            455667899999999 899999999999 7999999999988877744

>d1wv2a_ c.1.31.1 (A:) Thiazole biosynthesis protein ThiG {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: ThiG-like
family: ThiG-like
domain: Thiazole biosynthesis protein ThiG
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.19  E-value=0.068  Score=37.75  Aligned_cols=47  Identities=21%  Similarity=0.246  Sum_probs=39.9

Q ss_pred             hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCc
Q 046574           12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPD   59 (104)
Q Consensus        12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPd   59 (104)
                      ...+.+++..++|||+.+|| ++.+|.++++-| +|.|.+..+...-.|
T Consensus       169 ~~l~~i~~~~~vpvivdAGIg~psdaa~AMElG-~dgVLvnsaIa~A~d  216 (243)
T d1wv2a_         169 YNLRIILEEAKVPVLVDAGVGTASDAAIAMELG-CEAVLMNTAIAHAKD  216 (243)
T ss_dssp             HHHHHHHHHCSSCBEEESCCCSHHHHHHHHHHT-CSEEEESHHHHTSSS
T ss_pred             HHHHhccccCCcceEeecccCCHHHHHHHHHcc-CCEEEechHhhcCCC
Confidence            46677888889999999999 999999999999 899999877654433

>d1eepa_ c.1.5.1 (A:) Inosine monophosphate dehydrogenase (IMPDH) {Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Inosine monophosphate dehydrogenase (IMPDH)
family: Inosine monophosphate dehydrogenase (IMPDH)
domain: Inosine monophosphate dehydrogenase (IMPDH)
species: Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]

Probab=94.12  E-value=0.033  Score=41.46  Aligned_cols=43  Identities=33%  Similarity=0.424  Sum_probs=36.9

Q ss_pred             HcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHHHH
Q 046574           20 AFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLPRR   63 (104)
Q Consensus        20 ~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~r   63 (104)
                      ...+|||+-||| ++-++-++|..| +|+|.+|.+|...-+-|-+
T Consensus       252 ~~~vpiIADGGi~~~Gdi~KAla~G-Ad~VMlG~~lAg~~Espg~  295 (388)
T d1eepa_         252 NTNICIIADGGIRFSGDVVKAIAAG-ADSVMIGNLFAGTKESPSE  295 (388)
T ss_dssp             TSSCEEEEESCCCSHHHHHHHHHHT-CSEEEECHHHHTBTTSSSC
T ss_pred             cCCceEEeccccCcCCceeeeEEec-cceeecchhhhcccCCCce
Confidence            346799999999 899999999999 7999999999987776643

>d1xm3a_ c.1.31.1 (A:) Thiazole biosynthesis protein ThiG {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: ThiG-like
family: ThiG-like
domain: Thiazole biosynthesis protein ThiG
species: Bacillus subtilis [TaxId: 1423]

Probab=93.93  E-value=0.091  Score=37.24  Aligned_cols=47  Identities=23%  Similarity=0.246  Sum_probs=40.0

Q ss_pred             hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCc
Q 046574           12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPD   59 (104)
Q Consensus        12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPd   59 (104)
                      ..++.|++..++|||+-+|| +|.+|.++++=| +|.|.+-.....-.|
T Consensus       167 ~~l~~i~~~~~vPvIvDAGIG~pSdAa~AMElG-~daVLvNTAIA~a~d  214 (251)
T d1xm3a_         167 LNLSFIIEQAKVPVIVDAGIGSPKDAAYAMELG-ADGVLLNTAVSGADD  214 (251)
T ss_dssp             HHHHHHHHHCSSCBEEESCCCSHHHHHHHHHTT-CSEEEESHHHHTSSS
T ss_pred             HHHHHHHhcCCccEEEecCCCCHHHHHHHHHcc-CCEEEechhhhcCCC
Confidence            57788999999999999999 999999999999 899988766544443

>d2flia1 c.1.2.2 (A:3-219) D-ribulose-5-phosphate 3-epimerase {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: D-ribulose-5-phosphate 3-epimerase
domain: D-ribulose-5-phosphate 3-epimerase
species: Streptococcus pyogenes [TaxId: 1314]

Probab=93.65  E-value=0.041  Score=37.76  Aligned_cols=43  Identities=23%  Similarity=0.383  Sum_probs=37.8

Q ss_pred             CCeEEEeCCCCHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHh
Q 046574           22 KGTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANPDLPRRFE   65 (104)
Q Consensus        22 ~~pvi~~Ggi~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~   65 (104)
                      +.++.+-||++.+.+..+.+.| +|.+.+|+.+..++|..+.+.
T Consensus       168 ~~~I~vDGGIn~~~i~~l~~aG-ad~~V~Gsaif~~~d~~~~i~  210 (217)
T d2flia1         168 SFDIEVDGGVDNKTIRACYEAG-ANVFVAGSYLFKASDLVSQVQ  210 (217)
T ss_dssp             CCEEEEESSCCTTTHHHHHHHT-CCEEEESHHHHTSSCHHHHHH
T ss_pred             CeEEEEeCCCCHHHHHHHHHCC-CCEEEEchHHhCCCCHHHHHH
Confidence            3578888999999999999999 899999999999999877664

>d1rpxa_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Potato (Solanum tuberosum) [TaxId: 4113]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: D-ribulose-5-phosphate 3-epimerase
domain: D-ribulose-5-phosphate 3-epimerase
species: Potato (Solanum tuberosum) [TaxId: 4113]

Probab=93.53  E-value=0.08  Score=36.69  Aligned_cols=44  Identities=25%  Similarity=0.357  Sum_probs=38.2

Q ss_pred             CCeEEEeCCCCHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHhh
Q 046574           22 KGTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEF   66 (104)
Q Consensus        22 ~~pvi~~Ggi~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~~   66 (104)
                      +..+.+-||++.+.+..+.+.| +|.+..|..+..++|+...+..
T Consensus       179 ~~~I~vDGGIn~~~i~~l~~~G-ad~~V~GS~if~~~d~~~~i~~  222 (230)
T d1rpxa_         179 NPWIEVDGGVGPKNAYKVIEAG-ANALVAGSAVFGAPDYAEAIKG  222 (230)
T ss_dssp             CCEEEEESSCCTTTHHHHHHHT-CCEEEESHHHHTSSCHHHHHHH
T ss_pred             ceEEEEECCcCHHHHHHHHHcC-CCEEEEChHHHCCCCHHHHHHH
Confidence            4577888999999999999999 7999999999999998766653

>d2f6ua1 c.1.4.1 (A:1001-1231) (S)-3-O-geranylgeranylglyceryl phosphate synthase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: (S)-3-O-geranylgeranylglyceryl phosphate synthase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=93.42  E-value=0.1  Score=35.54  Aligned_cols=43  Identities=21%  Similarity=0.410  Sum_probs=33.9

Q ss_pred             hHHHHHHHHc-CCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhh
Q 046574           12 HSLLLMRKAF-KGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLA   56 (104)
Q Consensus        12 ~~~~~ir~~~-~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~la   56 (104)
                      .....+++.. +.||++.+|| |+++|+++.+ + +|.|.+|-.++-
T Consensus       176 ~~~~~~~k~~~~~Pv~VGFGI~s~e~a~~~~~-~-ADgvIVGSaive  220 (231)
T d2f6ua1         176 ELVAEVKKVLDKARLFYGGGIDSREKAREMLR-Y-ADTIIVGNVIYE  220 (231)
T ss_dssp             HHHHHHHHHCSSSEEEEESCCCSHHHHHHHHH-H-SSEEEECHHHHH
T ss_pred             hHHHHHHHhcCCCCEEEEeCcCCHHHHHHHHh-c-CCEEEEChHHhc
Confidence            4444566665 4799999999 9999988764 5 899999998764

>d1wa3a1 c.1.10.1 (A:2-203) KDPG aldolase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: KDPG aldolase
species: Thermotoga maritima [TaxId: 2336]

Probab=93.37  E-value=0.038  Score=37.78  Aligned_cols=47  Identities=17%  Similarity=0.210  Sum_probs=37.5

Q ss_pred             hHHHHHHHHcC-CeEEEeCCCCHHHHHHHHHcCCCcEEecchHHhhCCcH
Q 046574           12 HSLLLMRKAFK-GTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANPDL   60 (104)
Q Consensus        12 ~~~~~ir~~~~-~pvi~~Ggi~~~~ae~~l~~g~~DlVa~gR~~lanPdl   60 (104)
                      ...+.++..+. .++|.+||++.+.+.+.++.| +..|++|..+. ++||
T Consensus       138 ~~lk~l~~p~p~i~~iptGGI~~~n~~~~l~ag-a~avg~Gs~l~-~~~~  185 (202)
T d1wa3a1         138 QFVKAMKGPFPNVKFVPTGGVNLDNVCEWFKAG-VLAVGVGSALV-KGTP  185 (202)
T ss_dssp             HHHHHHHTTCTTCEEEEBSSCCTTTHHHHHHHT-CSCEEECHHHH-CSCH
T ss_pred             HHHHHHhCcccCCcEEeeCCCCHHHHHHHHHCC-CeEEEEchhhc-CCCH
Confidence            34555666664 699999999999999999998 78999998776 4555

>d1znna1 c.1.2.6 (A:18-271) Pyridoxal biosynthesis lyase PdxS {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: PdxS-like
domain: Pyridoxal biosynthesis lyase PdxS
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=93.08  E-value=0.19  Score=35.58  Aligned_cols=51  Identities=20%  Similarity=0.204  Sum_probs=39.9

Q ss_pred             HHHHHHH--HcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHHHHH
Q 046574           13 SLLLMRK--AFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLPRRF   64 (104)
Q Consensus        13 ~~~~ir~--~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri   64 (104)
                      .+..+.+  .+++|+|+.||| ||.+|..+++-| ||.|.+|.+.....|=+.+.
T Consensus       178 l~~~v~~~g~l~v~~~~~~Gi~tpadaa~~MelG-~dgV~v~s~I~~s~dP~~~a  231 (254)
T d1znna1         178 VLREIKRLGRLPVVNFAAGGVTTPADAALMMHLG-ADGVFVGSGIFKSENPEKYA  231 (254)
T ss_dssp             HHHHHHHHTSCSSEEEEESSCCSHHHHHHHHHTT-CSEEEECGGGGGSSCHHHHH
T ss_pred             HHHHHHHhCCCCceEEecCCCCChhhHHHHHHcC-CCEEEEcchhhcCCCHHHHH
Confidence            4445554  356799999999 999999999988 89999988877766655443

>d2czda1 c.1.2.3 (A:1-206) Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Decarboxylase
domain: Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase)
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=93.06  E-value=0.14  Score=34.04  Aligned_cols=53  Identities=25%  Similarity=0.449  Sum_probs=39.4

Q ss_pred             chHHHHHHHHcC-CeEEEeCCC--CHHHHHHHHHcCCCcEEecchHHhhCCcHHHHH
Q 046574           11 PHSLLLMRKAFK-GTFLVAGGY--DREDGNKAIAEGRADLVVYGRFFLANPDLPRRF   64 (104)
Q Consensus        11 ~~~~~~ir~~~~-~pvi~~Ggi--~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri   64 (104)
                      ++....+|+.++ .-.+.++||  ......++++.| +|++.+||+....+|-.+.+
T Consensus       143 ~~~~~~~r~~~~~~~~i~~pGI~~~~~~~~~ai~~G-ad~iVvGR~I~~a~dP~~aa  198 (206)
T d2czda1         143 PERIGYIRDRLKEGIKILAPGIGAQGGKAKDAVKAG-ADYIIVGRAIYNAPNPREAA  198 (206)
T ss_dssp             THHHHHHHHHSCTTCEEEECCCCSSTTHHHHHHHHT-CSEEEECHHHHTSSSHHHHH
T ss_pred             chhhhhhhhhhcccceEECCCccccCCCHHHHHHhC-CCEEEEChhhccCCCHHHHH
Confidence            345667888775 345667777  455778888888 79999999999988766544

>d2cu0a1 c.1.5.1 (A:3-96,A:207-480) Inosine monophosphate dehydrogenase (IMPDH) {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Inosine monophosphate dehydrogenase (IMPDH)
family: Inosine monophosphate dehydrogenase (IMPDH)
domain: Inosine monophosphate dehydrogenase (IMPDH)
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=93.05  E-value=0.059  Score=39.79  Aligned_cols=44  Identities=30%  Similarity=0.423  Sum_probs=36.7

Q ss_pred             HHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHHH
Q 046574           18 RKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLPR   62 (104)
Q Consensus        18 r~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~   62 (104)
                      ...+++|||+.||+ ++-++-++|..| +|+|.+|..|...-+-|-
T Consensus       212 ~~~~~~~iiADGGi~~~Gdi~KAla~G-Ad~VMlG~~lAg~~Espg  256 (368)
T d2cu0a1         212 AQEYGLYVIADGGIRYSGDIVKAIAAG-ADAVMLGNLLAGTKEAPG  256 (368)
T ss_dssp             HHHHTCEEEEESCCCSHHHHHHHHHTT-CSEEEESTTTTTBTTCCS
T ss_pred             HhccCCeeEecCCCCcCChhheeeeec-cceeeccchhccccccCC
Confidence            34457899999999 898999999999 799999999887666543

>d1pvna1 c.1.5.1 (A:2-99,A:231-494) Inosine monophosphate dehydrogenase (IMPDH) {Tritrichomonas foetus [TaxId: 5724]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Inosine monophosphate dehydrogenase (IMPDH)
family: Inosine monophosphate dehydrogenase (IMPDH)
domain: Inosine monophosphate dehydrogenase (IMPDH)
species: Tritrichomonas foetus [TaxId: 5724]

Probab=92.87  E-value=0.05  Score=40.08  Aligned_cols=41  Identities=29%  Similarity=0.404  Sum_probs=35.6

Q ss_pred             CCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHHHH
Q 046574           22 KGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLPRR   63 (104)
Q Consensus        22 ~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~r   63 (104)
                      ++|||+.||| ++-++-++|..| +|+|.+|..|...-+-|-+
T Consensus       220 ~v~iiaDGGi~~~gdi~KAla~G-Ad~VM~G~~lAg~~Espg~  261 (362)
T d1pvna1         220 YIPVCSDGGIVYDYHMTLALAMG-ADFIMLGRYFARFEESPTR  261 (362)
T ss_dssp             ECCEEEESCCCSHHHHHHHHHTT-CSEEEESHHHHTBTTSSSC
T ss_pred             CCceeeccccCcccceeEEEEEe-ccceeehhhhhcccccCCc
Confidence            4799999999 999999999999 7999999999877666543

>d1vc4a_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Tryptophan biosynthesis enzymes
domain: Indole-3-glycerophosphate synthase, IPGS
species: Thermus thermophilus [TaxId: 274]

Probab=91.65  E-value=0.2  Score=35.38  Aligned_cols=42  Identities=24%  Similarity=0.451  Sum_probs=35.7

Q ss_pred             CCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHh
Q 046574           22 KGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLPRRFE   65 (104)
Q Consensus        22 ~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~   65 (104)
                      +..+|+-+|| +++++.. +..| +|.|.+|-.++.+||....++
T Consensus       208 ~~i~IsESGI~~~~dv~~-l~~g-~davLIGesLm~~~d~~~~l~  250 (254)
T d1vc4a_         208 GGVLVAESGYSRKEELKA-LEGL-FDAVLIGTSLMRAPDLEAALR  250 (254)
T ss_dssp             CSEEEEESCCCSHHHHHT-TTTT-CSEEEECHHHHTSSCHHHHHH
T ss_pred             CCEEEEccCCCCHHHHHH-HHcC-CCEEEEChhhcCCCCHHHHHH
Confidence            4578999999 9999865 4777 899999999999999877665

>d1vhca_ c.1.10.1 (A:) Hypothetical protein HI0047 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Hypothetical protein HI0047
species: Haemophilus influenzae [TaxId: 727]

Probab=91.33  E-value=0.047  Score=37.68  Aligned_cols=56  Identities=11%  Similarity=0.114  Sum_probs=39.0

Q ss_pred             CCCCCCcchHHHHHHHHcC-CeEEEeCCCCHHHHHHHHHcCCCcEEecchH-----HhhCCcH
Q 046574            4 VGEKSECPHSLLLMRKAFK-GTFLVAGGYDREDGNKAIAEGRADLVVYGRF-----FLANPDL   60 (104)
Q Consensus         4 ~~~~~~~~~~~~~ir~~~~-~pvi~~Ggi~~~~ae~~l~~g~~DlVa~gR~-----~lanPdl   60 (104)
                      +.+.-......+.++..+. .++|.+||++.+.+.+.++.| +.+++.|..     ++.+.||
T Consensus       135 PA~~~gG~~~lkal~~p~p~~~~~ptGGV~~~N~~~yl~~g-~v~~~~Gs~l~~~~~i~~~d~  196 (212)
T d1vhca_         135 PAEASGGVKMIKALLGPYAQLQIMPTGGIGLHNIRDYLAIP-NIVACGGSWFVEKKLIQSNNW  196 (212)
T ss_dssp             TTTTTTHHHHHHHHHTTTTTCEEEEBSSCCTTTHHHHHTST-TBCCEEECGGGCHHHHHTTCH
T ss_pred             cccccchHHHHHHHhccccCCeEEecCCCCHHHHHHHHhCC-CEEEEEChhhCCHHHHhcCCH
Confidence            3333334456677777775 599999999999999999988 456666554     3455555

>d1piia2 c.1.2.4 (A:1-254) Indole-3-glycerophosphate synthase, IPGS {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Tryptophan biosynthesis enzymes
domain: Indole-3-glycerophosphate synthase, IPGS
species: Escherichia coli [TaxId: 562]

Probab=91.23  E-value=0.37  Score=33.89  Aligned_cols=50  Identities=14%  Similarity=0.107  Sum_probs=39.5

Q ss_pred             HHHHHHHcC--CeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHh
Q 046574           14 LLLMRKAFK--GTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLPRRFE   65 (104)
Q Consensus        14 ~~~ir~~~~--~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~   65 (104)
                      ...+.+.+.  ..+|+-+|| +++++..+ .+| +|.|.+|-.++..||....++
T Consensus       198 t~~L~~~ip~~~~~VsESGI~~~~d~~~l-~~g-~davLiGeslm~~~dp~~~l~  250 (254)
T d1piia2         198 TRELAPKLGHNVTVISESGINTYAQVREL-SHF-ANGFLIGSALMAHDDLHAAVR  250 (254)
T ss_dssp             HHHHHHHHCTTSEEEEESCCCCHHHHHHH-TTT-CSEEEECHHHHTCSCHHHHHH
T ss_pred             HHHHHHhCCCCCEEEEcCCCCCHHHHHHH-HcC-CCEEEEChHHhCCCCHHHHHH
Confidence            344556663  478888999 99999765 777 699999999999999877664

>d1tqja_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Synechocystis sp. PCC 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: D-ribulose-5-phosphate 3-epimerase
domain: D-ribulose-5-phosphate 3-epimerase
species: Synechocystis sp. PCC 6803 [TaxId: 1148]

Probab=90.71  E-value=0.14  Score=35.09  Aligned_cols=43  Identities=19%  Similarity=0.336  Sum_probs=36.9

Q ss_pred             CCeEEEeCCCCHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHh
Q 046574           22 KGTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANPDLPRRFE   65 (104)
Q Consensus        22 ~~pvi~~Ggi~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~   65 (104)
                      +..+.+-||++.+.+..+++.| +|.+..|..+..++|....+.
T Consensus       171 ~~~I~VDGGIn~~~i~~l~~~G-ad~~V~GS~if~~~d~~~~i~  213 (221)
T d1tqja_         171 DPWIEVDGGLKPNNTWQVLEAG-ANAIVAGSAVFNAPNYAEAIA  213 (221)
T ss_dssp             CCEEEEESSCCTTTTHHHHHHT-CCEEEESHHHHTSSCHHHHHH
T ss_pred             ceEEEEECCcCHHHHHHHHHcC-CCEEEEChHHhCCCCHHHHHH
Confidence            3567788999999999999999 799999999999999865554

>d1eixa_ c.1.2.3 (A:) Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Decarboxylase
domain: Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase)
species: Escherichia coli [TaxId: 562]

Probab=89.59  E-value=0.29  Score=33.09  Aligned_cols=51  Identities=22%  Similarity=0.333  Sum_probs=36.0

Q ss_pred             HHHHHHHHcCC-eEEEeCCCCHH-----------HHHHHHHcCCCcEEecchHHhhCCcHHHHH
Q 046574           13 SLLLMRKAFKG-TFLVAGGYDRE-----------DGNKAIAEGRADLVVYGRFFLANPDLPRRF   64 (104)
Q Consensus        13 ~~~~ir~~~~~-pvi~~Ggi~~~-----------~ae~~l~~g~~DlVa~gR~~lanPdl~~ri   64 (104)
                      ....+++.++. .++.+.||.++           ..+++++.| +|+|.+||+....+|=...+
T Consensus       161 ~~~~~~~~~~~~~~~~tPGI~~~~~~~~dq~r~~tp~~Ai~~G-aD~iIVGR~It~a~dP~~aa  223 (231)
T d1eixa_         161 EAVRFKQVFGQEFKLVTPGIRPQGSEAGDQRRIMTPEQALSAG-VDYMVIGRPVTQSVDPAQTL  223 (231)
T ss_dssp             GHHHHHHHHCSSSEEEECCBCCTTCCCTTCCSCBCHHHHHHTT-CSEEEECHHHHTSSSHHHHH
T ss_pred             hhhhhhhhcCCccceecCCcccCCCCccCccccCCHHHHHHcC-CCEEEECCcccCCCCHHHHH
Confidence            44566777653 68888887322           145677788 79999999999877765443

>d1wbha1 c.1.10.1 (A:1-213) KDPG aldolase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: KDPG aldolase
species: Escherichia coli [TaxId: 562]

Probab=89.21  E-value=0.1  Score=35.97  Aligned_cols=48  Identities=19%  Similarity=0.234  Sum_probs=35.1

Q ss_pred             CCCCCcchHHHHHHHHcC-CeEEEeCCCCHHHHHHHHHcCCCcEEecchH
Q 046574            5 GEKSECPHSLLLMRKAFK-GTFLVAGGYDREDGNKAIAEGRADLVVYGRF   53 (104)
Q Consensus         5 ~~~~~~~~~~~~ir~~~~-~pvi~~Ggi~~~~ae~~l~~g~~DlVa~gR~   53 (104)
                      .+.-+.....+.++..+. .++|.+||++.+.+.+.++.| +.+++.|..
T Consensus       137 A~~~Gg~~~lkal~~p~p~~~~~ptGGV~~~n~~~yl~~g-~v~~~~Gs~  185 (213)
T d1wbha1         137 AEANGGVKALQAIAGPFSQVRFCPTGGISPANYRDYLALK-SVLCIGGSW  185 (213)
T ss_dssp             TTTTTHHHHHHHHHTTCTTCEEEEBSSCCTTTHHHHHTST-TBSCEEEGG
T ss_pred             chhcChHHHHHHhcCcccCCceeeeCCCCHHHHHHHHhCC-CEEEEEChh
Confidence            333333456667777765 489999999999999999998 566666654

>d1o5xa_ c.1.1.1 (A:) Triosephosphate isomerase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Triosephosphate isomerase (TIM)
family: Triosephosphate isomerase (TIM)
domain: Triosephosphate isomerase
species: Plasmodium falciparum [TaxId: 5833]

Probab=88.73  E-value=0.13  Score=35.88  Aligned_cols=42  Identities=17%  Similarity=0.169  Sum_probs=37.2

Q ss_pred             CeEEEeCCCCHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHh
Q 046574           23 GTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANPDLPRRFE   65 (104)
Q Consensus        23 ~pvi~~Ggi~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~   65 (104)
                      +||+-.|+++++.+.++++...+|-+.+|++-|. ++|..-++
T Consensus       202 i~ilYGGSV~~~N~~~i~~~~~idG~LVG~ASL~-~~F~~Ii~  243 (246)
T d1o5xa_         202 IRILYGGSVNTENCSSLIQQEDIDGFLVGNASLK-ESFVDIIK  243 (246)
T ss_dssp             SEEEECSCCCTTTHHHHHTSTTCCEEEECGGGGS-TTHHHHHH
T ss_pred             ccEEEeCCCCHhHHHHHhcCCCCCEEEeecccCC-HHHHHHHH
Confidence            5888888889999999999999999999999995 89986554

>d1qapa1 c.1.17.1 (A:130-296) Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Nicotinate/Quinolinate PRTase C-terminal domain-like
family: NadC C-terminal domain-like
domain: Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=88.45  E-value=0.48  Score=31.23  Aligned_cols=31  Identities=19%  Similarity=0.292  Sum_probs=27.3

Q ss_pred             CeEEEeCCCCHHHHHHHHHcCCCcEEecchHH
Q 046574           23 GTFLVAGGYDREDGNKAIAEGRADLVVYGRFF   54 (104)
Q Consensus        23 ~pvi~~Ggi~~~~ae~~l~~g~~DlVa~gR~~   54 (104)
                      ..+-++|||+++.+++....| +|+|++|...
T Consensus       124 ~~lEaSGgI~~~ni~~ya~~G-VD~IS~galt  154 (167)
T d1qapa1         124 ARLEVSGNVTAETLREFAETG-VDFISVGALT  154 (167)
T ss_dssp             CCEEECCCSCHHHHHHHHHTT-CSEEECSHHH
T ss_pred             eEEEEeCCCCHHHHHHHHHcC-CCEEECCccc
Confidence            368899999999999999988 8999999763

>d1n55a_ c.1.1.1 (A:) Triosephosphate isomerase {Leishmania mexicana [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Triosephosphate isomerase (TIM)
family: Triosephosphate isomerase (TIM)
domain: Triosephosphate isomerase
species: Leishmania mexicana [TaxId: 5665]

Probab=88.27  E-value=0.28  Score=34.18  Aligned_cols=41  Identities=15%  Similarity=0.184  Sum_probs=36.4

Q ss_pred             CeEEEeCCCCHHHHHHHHHcCCCcEEecchHHhhCCcHHHHH
Q 046574           23 GTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANPDLPRRF   64 (104)
Q Consensus        23 ~pvi~~Ggi~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri   64 (104)
                      ++|+-.|+++++.+++++....+|-+.+|++-| ||||.+-+
T Consensus       205 i~ilYGGSV~~~N~~~i~~~~~vdG~LVG~ASl-~~~F~~Ii  245 (249)
T d1n55a_         205 LRILYGGSVNAANAATLYAKPDINGFLVGGASL-KPEFRDII  245 (249)
T ss_dssp             CEEEEESSCCTTTHHHHHTSTTCCEEEESGGGG-STTHHHHH
T ss_pred             ccEEEcCCCCHhHHHHHhcCCCCCeEEeehhhc-CHHHHHHH
Confidence            588888889999999999988899999999999 58987644

>d1i4na_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Tryptophan biosynthesis enzymes
domain: Indole-3-glycerophosphate synthase, IPGS
species: Thermotoga maritima [TaxId: 2336]

Probab=87.85  E-value=0.33  Score=34.15  Aligned_cols=50  Identities=14%  Similarity=0.159  Sum_probs=39.2

Q ss_pred             HHHHHHHcC--CeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHh
Q 046574           14 LLLMRKAFK--GTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLPRRFE   65 (104)
Q Consensus        14 ~~~ir~~~~--~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~   65 (104)
                      ...+.+.+.  .++|+-+|| ++++++.+ ..| +|.|.+|..++..+|-...++
T Consensus       192 ~~~L~~~ip~~~~~IaESGI~~~~d~~~l-~~G-~davLIG~sLm~~~~p~~~l~  244 (251)
T d1i4na_         192 LWELLPLVPDDTVVVAESGIKDPRELKDL-RGK-VNAVLVGTSIMKAENPRRFLE  244 (251)
T ss_dssp             HHHHGGGSCTTSEEEEESCCCCGGGHHHH-TTT-CSEEEECHHHHHCSSHHHHHH
T ss_pred             HHHHHhhCCCCCEEEEcCCCCCHHHHHHH-HhC-CCEEEEChHHhCCCCHHHHHH
Confidence            345556663  478888999 99999764 676 899999999999998766554

>d1wbha1 c.1.10.1 (A:1-213) KDPG aldolase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: KDPG aldolase
species: Escherichia coli [TaxId: 562]

Probab=87.68  E-value=0.34  Score=33.12  Aligned_cols=51  Identities=12%  Similarity=0.096  Sum_probs=38.5

Q ss_pred             hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHhh
Q 046574           12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEF   66 (104)
Q Consensus        12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~~   66 (104)
                      +..+.+++.++..++.+|.+ |.++++++++.| ++|+.-=   -.||++.+..+.
T Consensus        55 ~~I~~l~~~~p~~~vGaGTV~~~~~~~~a~~aG-a~FivSP---~~~~~v~~~a~~  106 (213)
T d1wbha1          55 DAIRAIAKEVPEAIVGAGTVLNPQQLAEVTEAG-AQFAISP---GLTEPLLKAATE  106 (213)
T ss_dssp             HHHHHHHHHCTTSEEEEESCCSHHHHHHHHHHT-CSCEEES---SCCHHHHHHHHH
T ss_pred             HHHHHHHHHCCCCeeeccccccHHHHHHHHHCC-CcEEECC---CCCHHHHHHHHh
Confidence            45667888887788999999 999999999999 6765421   156677666554

>d1ea0a2 c.1.4.1 (A:423-1193) Alpha subunit of glutamate synthase, central and FMN domains {Azospirillum brasilense [TaxId: 192]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Alpha subunit of glutamate synthase, central and FMN domains
species: Azospirillum brasilense [TaxId: 192]

Probab=87.16  E-value=0.36  Score=38.94  Aligned_cols=32  Identities=25%  Similarity=0.136  Sum_probs=29.8

Q ss_pred             CeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHh
Q 046574           23 GTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFL   55 (104)
Q Consensus        23 ~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~l   55 (104)
                      +.||+.|++ ++.++-.++.=| +|.|.+||.+|
T Consensus       643 V~l~a~Ggl~t~~Dv~ka~aLG-AD~v~~gt~~m  675 (771)
T d1ea0a2         643 VRLRTDGGLKTGRDIVIAAMLG-AEEFGIGTASL  675 (771)
T ss_dssp             SEEEEESSCCSHHHHHHHHHTT-CSEEECCHHHH
T ss_pred             eEEEEeCCCCCHHHHHHHHHhC-CCchHHhHHHH
Confidence            589999999 999999999889 79999999987

>d1mxsa_ c.1.10.1 (A:) KDPG aldolase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: KDPG aldolase
species: Pseudomonas putida [TaxId: 303]

Probab=86.82  E-value=0.18  Score=34.74  Aligned_cols=50  Identities=16%  Similarity=0.151  Sum_probs=35.6

Q ss_pred             hHHHHHHHHcC-CeEEEeCCCCHHHHHHHHHcCCCcEEe----cchHHhhCCcHH
Q 046574           12 HSLLLMRKAFK-GTFLVAGGYDREDGNKAIAEGRADLVV----YGRFFLANPDLP   61 (104)
Q Consensus        12 ~~~~~ir~~~~-~pvi~~Ggi~~~~ae~~l~~g~~DlVa----~gR~~lanPdl~   61 (104)
                      ...+.++..+. .++|.+||++.+.+.+.++.|.+-.++    +.+.++.+.||-
T Consensus       146 ~~ikal~~p~p~~~fiptGGV~~~n~~~yl~~~~v~avggs~l~~~~~i~~~d~~  200 (216)
T d1mxsa_         146 AAIKAFGGPFGDIRFCPTGGVNPANVRNYMALPNVMCVGTTWMLDSSWIKNGDWA  200 (216)
T ss_dssp             HHHHHHHTTTTTCEEEEBSSCCTTTHHHHHHSTTBCCEEECTTSCHHHHHTTCHH
T ss_pred             HHHHHHhcccccCceeccCCCCHHHHHHHHhcCCeEEEEccccCCHHHhhcCCHH
Confidence            45566666665 599999999999999999988544443    235556666663

>d1ujpa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Tryptophan biosynthesis enzymes
domain: Trp synthase alpha-subunit
species: Thermus thermophilus [TaxId: 274]

Probab=86.75  E-value=0.64  Score=32.84  Aligned_cols=44  Identities=20%  Similarity=0.146  Sum_probs=36.4

Q ss_pred             CcchHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHh
Q 046574            9 ECPHSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFL   55 (104)
Q Consensus         9 ~~~~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~l   55 (104)
                      +..+..+.+|+..+.||++.=|| +++++..+  .+ +|.|.+|..++
T Consensus       189 ~~~~~i~~ik~~t~~Pv~vGFGIs~~e~v~~~--~~-ADGvIVGSAiV  233 (271)
T d1ujpa_         189 EVKDLVRRIKARTALPVAVGFGVSGKATAAQA--AV-ADGVVVGSALV  233 (271)
T ss_dssp             CCHHHHHHHHTTCCSCEEEESCCCSHHHHHHH--TT-SSEEEECHHHH
T ss_pred             HHHHHHHhhhccccCCeEEeCCCCCHHHHHHh--CC-CCEEEEcHHHH
Confidence            34467788999888999998899 99999764  45 89999999875

>d1mo0a_ c.1.1.1 (A:) Triosephosphate isomerase {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Triosephosphate isomerase (TIM)
family: Triosephosphate isomerase (TIM)
domain: Triosephosphate isomerase
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=86.73  E-value=0.16  Score=35.69  Aligned_cols=42  Identities=14%  Similarity=0.216  Sum_probs=36.0

Q ss_pred             CeEEEeCCCCHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHh
Q 046574           23 GTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANPDLPRRFE   65 (104)
Q Consensus        23 ~pvi~~Ggi~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~   65 (104)
                      .+|+..|+++++.+.+++....+|-+.+|++-| ||||..-+.
T Consensus       211 ~~iLYGGSV~~~N~~~i~~~~~vDG~LVGgASL-~~~F~~Ii~  252 (257)
T d1mo0a_         211 TRIIYGGSVTADNAAELGKKPDIDGFLVGGASL-KPDFVKIIN  252 (257)
T ss_dssp             SCEEEESSCCTTTHHHHTTSTTCCEEEESGGGG-STHHHHHHH
T ss_pred             ccEEeeCCcCHHHHHHHhcCCCCCeEEeehHhC-ChHHHHHHH
Confidence            468888888999999999988899999999999 599876543

>d1mxsa_ c.1.10.1 (A:) KDPG aldolase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: KDPG aldolase
species: Pseudomonas putida [TaxId: 303]

Probab=86.04  E-value=0.46  Score=32.55  Aligned_cols=51  Identities=22%  Similarity=0.105  Sum_probs=37.4

Q ss_pred             hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHhh
Q 046574           12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEF   66 (104)
Q Consensus        12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~~   66 (104)
                      +..+.+++.+...++.+|.+ ++++++++++.| ++|+.-=   -.||++.+..++
T Consensus        57 ~~i~~l~~~~p~~~vGaGTV~~~~~~~~a~~aG-a~FivsP---~~~~~v~~~a~~  108 (216)
T d1mxsa_          57 KAIQVLREQRPELCVGAGTVLDRSMFAAVEAAG-AQFVVTP---GITEDILEAGVD  108 (216)
T ss_dssp             HHHHHHHHHCTTSEEEEECCCSHHHHHHHHHHT-CSSEECS---SCCHHHHHHHHH
T ss_pred             HHHHHHHHhCCCcceeeeeeecHHHHHHHHhCC-CCEEECC---CCcHHHHHHHHh
Confidence            45667888887789999999 999999999999 5654321   156666665444

>d1vhca_ c.1.10.1 (A:) Hypothetical protein HI0047 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Hypothetical protein HI0047
species: Haemophilus influenzae [TaxId: 727]

Probab=86.03  E-value=0.59  Score=31.81  Aligned_cols=51  Identities=25%  Similarity=0.262  Sum_probs=37.6

Q ss_pred             hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHhh
Q 046574           12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEF   66 (104)
Q Consensus        12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~~   66 (104)
                      +..+.+++.....++.+|.+ |.++++.+++.| ++|+.-=   -.||++.+...+
T Consensus        54 ~~I~~l~~~~p~~~vGaGTV~~~~~~~~a~~aG-a~FivSP---~~~~~v~~~a~~  105 (212)
T d1vhca_          54 DAIRLLRANRPDFLIAAGTVLTAEQVVLAKSSG-ADFVVTP---GLNPKIVKLCQD  105 (212)
T ss_dssp             HHHHHHHHHCTTCEEEEESCCSHHHHHHHHHHT-CSEEECS---SCCHHHHHHHHH
T ss_pred             HHHHHHHhcCCCceEeeeecccHHHHHHHHhhC-CcEEECC---CCCHHHHHHHHh
Confidence            45567888887789999999 999999999999 6775431   255666655443

>d1kv5a_ c.1.1.1 (A:) Triosephosphate isomerase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Triosephosphate isomerase (TIM)
family: Triosephosphate isomerase (TIM)
domain: Triosephosphate isomerase
species: Trypanosoma brucei [TaxId: 5691]

Probab=85.87  E-value=0.28  Score=34.15  Aligned_cols=42  Identities=12%  Similarity=0.179  Sum_probs=36.9

Q ss_pred             CeEEEeCCCCHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHh
Q 046574           23 GTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANPDLPRRFE   65 (104)
Q Consensus        23 ~pvi~~Ggi~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~   65 (104)
                      .||+-.|+++++.+++++....+|-+.+|++-+. |||.+-++
T Consensus       205 ~~ilYGGSV~~~N~~~i~~~~~vDG~LVGgASl~-~eF~~Ii~  246 (249)
T d1kv5a_         205 LRILYGGSVNGKNARTLYQQRDVNGFLVGGASLK-PEFVDIIK  246 (249)
T ss_dssp             CCEEEESSCCTTTHHHHHTSTTCCEEEESGGGGS-TTHHHHHH
T ss_pred             CcEEEcCCCCHhHHHHHhcCCCCCEEEechHhcC-HHHHHHHH
Confidence            5888889999999999999988999999999995 89876543

>d1r2ra_ c.1.1.1 (A:) Triosephosphate isomerase {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Triosephosphate isomerase (TIM)
family: Triosephosphate isomerase (TIM)
domain: Triosephosphate isomerase
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=85.60  E-value=0.28  Score=34.20  Aligned_cols=41  Identities=12%  Similarity=0.173  Sum_probs=35.7

Q ss_pred             CeEEEeCCCCHHHHHHHHHcCCCcEEecchHHhhCCcHHHHH
Q 046574           23 GTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANPDLPRRF   64 (104)
Q Consensus        23 ~pvi~~Ggi~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri   64 (104)
                      +||+-.|+++++.+.+++....+|-+.+|++-| +|+|.+-+
T Consensus       202 i~ilYGGSV~~~N~~~i~~~~~vDG~LVGgASL-~~eF~~Ii  242 (246)
T d1r2ra_         202 TRIIYGGSVTGATCKELASQPDVDGFLVGGASL-KPEFVDII  242 (246)
T ss_dssp             CCEEECSCCCTTTHHHHHTSTTCCEEEESGGGG-STHHHHHH
T ss_pred             ccEEecCCCCHHHHHHHhcCCCCCeEEeehhhC-CHHHHHHH
Confidence            478888888999999999999999999999999 58987544

>d1ofda2 c.1.4.1 (A:431-1239) Alpha subunit of glutamate synthase, central and FMN domains {Synechocystis sp. [TaxId: 1143]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Alpha subunit of glutamate synthase, central and FMN domains
species: Synechocystis sp. [TaxId: 1143]

Probab=85.07  E-value=0.51  Score=38.20  Aligned_cols=32  Identities=22%  Similarity=0.175  Sum_probs=29.8

Q ss_pred             CeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHh
Q 046574           23 GTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFL   55 (104)
Q Consensus        23 ~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~l   55 (104)
                      +.||+.||+ |+.++-.++.-| +|.|.+||.+|
T Consensus       670 V~Lia~Ggl~t~~Dv~ka~aLG-AD~v~~gt~~l  702 (809)
T d1ofda2         670 VLLRADGGLKTGWDVVMAALMG-AEEYGFGSIAM  702 (809)
T ss_dssp             CEEEEESSCCSHHHHHHHHHTT-CSEEECSHHHH
T ss_pred             eEEEEeCCCCCHHHHHHHHHhC-CCchhHhHHHH
Confidence            589999999 999999999999 79999999987

>d1dbta_ c.1.2.3 (A:) Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Decarboxylase
domain: Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase)
species: Bacillus subtilis [TaxId: 1423]

Probab=84.79  E-value=0.53  Score=31.95  Aligned_cols=50  Identities=18%  Similarity=0.170  Sum_probs=35.1

Q ss_pred             HHHHHHHHcC-CeEEEeCCCCHH-----------HHHHHHHcCCCcEEecchHHhhCCcHHHH
Q 046574           13 SLLLMRKAFK-GTFLVAGGYDRE-----------DGNKAIAEGRADLVVYGRFFLANPDLPRR   63 (104)
Q Consensus        13 ~~~~ir~~~~-~pvi~~Ggi~~~-----------~ae~~l~~g~~DlVa~gR~~lanPdl~~r   63 (104)
                      ....+|+..+ ..++++.||.+.           ..+++++.| +|++.+||+....+|-.+-
T Consensus       165 ~~~~~r~~~~~~~~ivtPGI~~~~~~~~dq~r~~tp~~a~~~G-aD~iIVGR~I~~s~dP~~a  226 (237)
T d1dbta_         165 EAKAIYQAVSPSFLTVTPGIRMSEDAANDQVRVATPAIAREKG-SSAIVVGRSITKAEDPVKA  226 (237)
T ss_dssp             GHHHHTTTSCTTCEEEECCBCCTTSCCTTCSSCBCHHHHHHTT-CSEEEECHHHHTSSCHHHH
T ss_pred             hhhhhccccccceeEeccccccCCCCCCCceeeCCHHHHHHcC-CCEEEECCcccCCCCHHHH
Confidence            3445666554 367888888322           256788888 7999999999988875543

>d1qkka_ c.23.1.1 (A:) Transcriptional regulatory protein DctD, receiver domain {Sinorhizobium meliloti [TaxId: 382]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Transcriptional regulatory protein DctD, receiver domain
species: Sinorhizobium meliloti [TaxId: 382]

Probab=84.58  E-value=0.89  Score=28.09  Aligned_cols=41  Identities=15%  Similarity=0.110  Sum_probs=32.5

Q ss_pred             CcchHHHHHHHHcC-CeEEEeCCC-CHHHHHHHHHcCCCcEEe
Q 046574            9 ECPHSLLLMRKAFK-GTFLVAGGY-DREDGNKAIAEGRADLVV   49 (104)
Q Consensus         9 ~~~~~~~~ir~~~~-~pvi~~Ggi-~~~~ae~~l~~g~~DlVa   49 (104)
                      +..+..+.+|+... .|||...+. +.+.+.++++.|..|++.
T Consensus        58 ~G~el~~~lr~~~~~~pvI~lT~~~~~~~~~~a~~~Ga~dyl~  100 (140)
T d1qkka_          58 DGLALFRKILALDPDLPMILVTGHGDIPMAVQAIQDGAYDFIA  100 (140)
T ss_dssp             CHHHHHHHHHHHCTTSCEEEEECGGGHHHHHHHHHTTCCEEEE
T ss_pred             CHHHHHHHHHHhCCCCcEEEEECCCCHHHHHHHHHcCCCEeec
Confidence            33467778888764 688888777 899999999999888775

>d1qpoa1 c.1.17.1 (A:117-285) Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Nicotinate/Quinolinate PRTase C-terminal domain-like
family: NadC C-terminal domain-like
domain: Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=84.16  E-value=0.32  Score=32.02  Aligned_cols=38  Identities=13%  Similarity=0.144  Sum_probs=29.4

Q ss_pred             HHHHHcC-CeEEEeCCCCHHHHHHHHHcCCCcEEecchHH
Q 046574           16 LMRKAFK-GTFLVAGGYDREDGNKAIAEGRADLVVYGRFF   54 (104)
Q Consensus        16 ~ir~~~~-~pvi~~Ggi~~~~ae~~l~~g~~DlVa~gR~~   54 (104)
                      .++.... +.+-++|||+++.+++....| +|+|++|...
T Consensus       119 ~~~~~~~~i~lEaSGgI~~~ni~~ya~~G-vD~IS~galt  157 (169)
T d1qpoa1         119 RRDSRAPTVMLESSGGLSLQTAATYAETG-VDYLAVGALT  157 (169)
T ss_dssp             HHHHHCTTCEEEEESSCCTTTHHHHHHTT-CSEEECGGGT
T ss_pred             HhhccCCeeEEEEeCCCCHHHHHHHHHcC-CCEEECCccc
Confidence            3444333 467789999999999999888 8999999653

>d1p0ka_ c.1.4.1 (A:) Isopentenyl-diphosphate delta-isomerase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Isopentenyl-diphosphate delta-isomerase
species: Bacillus subtilis [TaxId: 1423]

Probab=84.11  E-value=0.9  Score=31.65  Aligned_cols=38  Identities=16%  Similarity=0.113  Sum_probs=31.4

Q ss_pred             hHHHHHHHHcCCeEEE--eCCC-CHHHHHHHHHcCCCcEEec
Q 046574           12 HSLLLMRKAFKGTFLV--AGGY-DREDGNKAIAEGRADLVVY   50 (104)
Q Consensus        12 ~~~~~ir~~~~~pvi~--~Ggi-~~~~ae~~l~~g~~DlVa~   50 (104)
                      +..+.+++.+++|++.  +|+. +++.+..+++.| +|.|.+
T Consensus       148 ~~i~~i~~~~~~~vivk~v~~~~~~~~a~~~~~~G-aD~i~v  188 (329)
T d1p0ka_         148 KRIEQICSRVSVPVIVKEVGFGMSKASAGKLYEAG-AAAVDI  188 (329)
T ss_dssp             HHHHHHHHHCSSCEEEEEESSCCCHHHHHHHHHHT-CSEEEE
T ss_pred             HHHHHHHHHcCCCcEEEecCCcchHHHHHHHHhcC-CCEEEE
Confidence            4567788899998776  5666 999999999988 798887

>d1zfja1 c.1.5.1 (A:2-94,A:221-492) Inosine monophosphate dehydrogenase (IMPDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Inosine monophosphate dehydrogenase (IMPDH)
family: Inosine monophosphate dehydrogenase (IMPDH)
domain: Inosine monophosphate dehydrogenase (IMPDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=83.51  E-value=0.45  Score=34.87  Aligned_cols=37  Identities=24%  Similarity=0.392  Sum_probs=28.7

Q ss_pred             hHHHHHHHHcCC-eEEEeCCC-CHHHHHHHHHcCCCcEEec
Q 046574           12 HSLLLMRKAFKG-TFLVAGGY-DREDGNKAIAEGRADLVVY   50 (104)
Q Consensus        12 ~~~~~ir~~~~~-pvi~~Ggi-~~~~ae~~l~~g~~DlVa~   50 (104)
                      ...+.+|+.+.. +|| +|++ |++.++.+++.| +|.|-+
T Consensus       137 ~~i~~ik~~~~~~~iI-aGNV~T~e~a~~L~~aG-aD~VkV  175 (365)
T d1zfja1         137 RKIAEIRAHFPNRTLI-AGNIATAEGARALYDAG-VDVVKV  175 (365)
T ss_dssp             HHHHHHHHHCSSSCEE-EEEECSHHHHHHHHHTT-CSEEEE
T ss_pred             HHHHHHHhhCCCccee-ecccccHHHHHHHHhcC-CceEEe
Confidence            356678887754 555 6888 999999999999 898744

>d1b9ba_ c.1.1.1 (A:) Triosephosphate isomerase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Triosephosphate isomerase (TIM)
family: Triosephosphate isomerase (TIM)
domain: Triosephosphate isomerase
species: Thermotoga maritima [TaxId: 2336]

Probab=83.25  E-value=0.28  Score=34.34  Aligned_cols=42  Identities=14%  Similarity=0.011  Sum_probs=36.6

Q ss_pred             CeEEEeCCCCHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHh
Q 046574           23 GTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANPDLPRRFE   65 (104)
Q Consensus        23 ~pvi~~Ggi~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~   65 (104)
                      +||+-.|+++++.+++++....+|-+.+|++-|. |+|..-++
T Consensus       206 i~ilYGGSV~~~N~~~i~~~~~vDG~LVGgASL~-~~F~~I~~  247 (252)
T d1b9ba_         206 IRILYGGSIKPDNFLGLIVQKDIDGGLVGGASLK-ESFIELAR  247 (252)
T ss_dssp             SEEEEESSCCHHHHTTTSSSTTCCEEEESGGGTS-THHHHHHH
T ss_pred             ccEEEcCCCCHHHHHHHhcCCCCCEEEeechhCC-HHHHHHHH
Confidence            5888888899999999999888999999999995 89876443

>d1eepa_ c.1.5.1 (A:) Inosine monophosphate dehydrogenase (IMPDH) {Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Inosine monophosphate dehydrogenase (IMPDH)
family: Inosine monophosphate dehydrogenase (IMPDH)
domain: Inosine monophosphate dehydrogenase (IMPDH)
species: Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]

Probab=83.22  E-value=0.54  Score=34.54  Aligned_cols=38  Identities=21%  Similarity=0.299  Sum_probs=27.4

Q ss_pred             hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEec
Q 046574           12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVY   50 (104)
Q Consensus        12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~   50 (104)
                      +..+.+|+.+....|.+|++ |++.|+.+++.| +|.|-+
T Consensus       181 ~~i~~ik~~~~~v~vIaGNV~T~e~a~~L~~~G-aD~VkV  219 (388)
T d1eepa_         181 ELIKKIKTKYPNLDLIAGNIVTKEAALDLISVG-ADCLKV  219 (388)
T ss_dssp             HHHHHHHHHCTTCEEEEEEECSHHHHHHHHTTT-CSEEEE
T ss_pred             HHHHHHHHHCCCCceeeccccCHHHHHHHHhcC-CCeeee
Confidence            35566777765433445777 999999999999 798633

>d1ny5a1 c.23.1.1 (A:1-137) Transcriptional activator sigm54 (NtrC1), N-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Transcriptional activator sigm54 (NtrC1), N-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=82.57  E-value=1.2  Score=27.36  Aligned_cols=41  Identities=15%  Similarity=0.161  Sum_probs=32.1

Q ss_pred             CcchHHHHHHHHcC-CeEEEeCCC-CHHHHHHHHHcCCCcEEe
Q 046574            9 ECPHSLLLMRKAFK-GTFLVAGGY-DREDGNKAIAEGRADLVV   49 (104)
Q Consensus         9 ~~~~~~~~ir~~~~-~pvi~~Ggi-~~~~ae~~l~~g~~DlVa   49 (104)
                      +..+..+.+|+... .|||...+. +.+.+.++++.|..|++.
T Consensus        58 ~G~e~~~~lr~~~~~~piI~lT~~~~~~~~~~a~~~Ga~dyl~  100 (137)
T d1ny5a1          58 NGLEILKWIKERSPETEVIVITGHGTIKTAVEAMKMGAYDFLT  100 (137)
T ss_dssp             BHHHHHHHHHHHCTTSEEEEEEETTCHHHHHHHHTTTCCEEEE
T ss_pred             hHHHHHHHHHHhCCCCCEEEEECCCCHHHHHHHHHcCCCEEEe
Confidence            33467788888764 587777667 899999999999888765

>d1neya_ c.1.1.1 (A:) Triosephosphate isomerase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Triosephosphate isomerase (TIM)
family: Triosephosphate isomerase (TIM)
domain: Triosephosphate isomerase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=82.43  E-value=0.18  Score=35.25  Aligned_cols=41  Identities=15%  Similarity=0.153  Sum_probs=35.9

Q ss_pred             CeEEEeCCCCHHHHHHHHHcCCCcEEecchHHhhCCcHHHHH
Q 046574           23 GTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANPDLPRRF   64 (104)
Q Consensus        23 ~pvi~~Ggi~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri   64 (104)
                      ++|+-.|+++++.+.+++....+|-+.+|++-| +|+|..-+
T Consensus       203 i~iLYGGSV~~~N~~~i~~~~~iDG~LVGgASL-~~eF~~Ii  243 (247)
T d1neya_         203 LRILYGGSANGSNAVTFKDKADVDGFLVGGASL-KPEFVDII  243 (247)
T ss_dssp             CCEEEESSCCTTTGGGGTTCTTCCEEEESGGGG-STHHHHHH
T ss_pred             CcEEEeCCCCHHHHHHHhcCCCCCeEEeehHhC-ChHHHHHH
Confidence            578888888999999999999999999999998 58987644

>d1xhfa1 c.23.1.1 (A:2-122) Aerobic respiration control protein ArcA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Aerobic respiration control protein ArcA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=82.21  E-value=1.7  Score=25.95  Aligned_cols=39  Identities=13%  Similarity=0.111  Sum_probs=30.7

Q ss_pred             chHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEe
Q 046574           11 PHSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVV   49 (104)
Q Consensus        11 ~~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa   49 (104)
                      -+..+.+|+..+.|+|...+. +.+...++++.|..|++.
T Consensus        62 ~~~~~~~r~~~~~pii~lt~~~~~~~~~~a~~~Ga~dyl~  101 (121)
T d1xhfa1          62 LLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYIT  101 (121)
T ss_dssp             HHHHHHHHHHCCCEEEEEESCCSHHHHHHHHHHTCSEEEE
T ss_pred             cHHHHHHHhcCCCcEEEEECCCCHHHHHHHHHcCCCEEEe
Confidence            356777888878887777666 888999999999877653

>d1ytda1 c.1.17.1 (A:120-389) Nicotinate phosphoribosyltransferase Ta1145 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Nicotinate/Quinolinate PRTase C-terminal domain-like
family: NadC C-terminal domain-like
domain: Nicotinate phosphoribosyltransferase Ta1145
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=81.57  E-value=1.8  Score=30.17  Aligned_cols=46  Identities=20%  Similarity=0.215  Sum_probs=36.3

Q ss_pred             HHHHHHHHc------CCeEEEeCCCCHHHHHHHHHcCCCcEEecchHHhhCCc
Q 046574           13 SLLLMRKAF------KGTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANPD   59 (104)
Q Consensus        13 ~~~~ir~~~------~~pvi~~Ggi~~~~ae~~l~~g~~DlVa~gR~~lanPd   59 (104)
                      ....+|+.+      +..+|.++|++++.++++.+.+ +|..++|..++..|.
T Consensus       130 l~~~~r~~Ld~~G~~~vkIi~S~glde~~I~~l~~~~-~d~fGvGt~Lvt~~~  181 (270)
T d1ytda1         130 LIREVRWELALRGRSDIKIMVSGGLDENTVKKLREAG-AEAFGVGTSISSAKP  181 (270)
T ss_dssp             HHHHHHHHHHHTTCTTSEEEEESSCCHHHHHHHHHHT-CCEEEECHHHHTCCC
T ss_pred             HHHHHHHhcCccCCCcceEEECCCCCHHHHHHHHhcC-CceEeeccccccCCC
Confidence            445566655      2369999999999999988776 799999999987764

>d1dbwa_ c.23.1.1 (A:) Transcriptional regulatory protein FixJ, receiver domain {Rhizobium meliloti [TaxId: 382]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Transcriptional regulatory protein FixJ, receiver domain
species: Rhizobium meliloti [TaxId: 382]

Probab=81.22  E-value=1.9  Score=25.89  Aligned_cols=44  Identities=18%  Similarity=0.107  Sum_probs=32.5

Q ss_pred             CcchHHHHHHHHcC-CeEEEeCCC-CHHHHHHHHHcCCCcEEecchHH
Q 046574            9 ECPHSLLLMRKAFK-GTFLVAGGY-DREDGNKAIAEGRADLVVYGRFF   54 (104)
Q Consensus         9 ~~~~~~~~ir~~~~-~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~   54 (104)
                      +.-+..+.+|+... .|+|...+. +.+.+.++++.|..|++.  +|+
T Consensus        61 ~G~e~~~~lr~~~~~~~iI~lt~~~~~~~~~~a~~~Ga~~yl~--KP~  106 (123)
T d1dbwa_          61 SGVELLRNLGDLKINIPSIVITGHGDVPMAVEAMKAGAVDFIE--KPF  106 (123)
T ss_dssp             CHHHHHHHHHHTTCCCCEEEEECTTCHHHHHHHHHTTCSEEEE--SSC
T ss_pred             cchHHHHHHHhcCCCCeEEEEEeeCCHHHHHHHHHCCCCEEEE--CCC
Confidence            33467788888654 577766666 999999999999877664  564

>d1krwa_ c.23.1.1 (A:) NTRC receiver domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: NTRC receiver domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=80.39  E-value=1.3  Score=26.67  Aligned_cols=44  Identities=14%  Similarity=0.143  Sum_probs=33.0

Q ss_pred             CcchHHHHHHHHcC-CeEEEeCCC-CHHHHHHHHHcCCCcEEecchHH
Q 046574            9 ECPHSLLLMRKAFK-GTFLVAGGY-DREDGNKAIAEGRADLVVYGRFF   54 (104)
Q Consensus         9 ~~~~~~~~ir~~~~-~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~   54 (104)
                      +..+.++.+++... .|+|...+. +.+.+.++++.|..|+  +.+|+
T Consensus        61 ~G~el~~~l~~~~~~~piI~~t~~~~~~~~~~a~~~Ga~dy--l~KP~  106 (123)
T d1krwa_          61 DGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDY--LPKPF  106 (123)
T ss_dssp             TTHHHHHHHHHHSSSCCEEESCCCSCHHHHHHHHHHTEEEE--CSSCC
T ss_pred             hHHHHHHHHHHhCCCCeEEEEecCCCHHHHHHHHHcCCCeE--EeCcC
Confidence            33457788888764 588888888 8999999999996554  45554

>d1t71a_ d.159.1.9 (A:) Hypothetical protein MPN349 {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a+b)
fold: Metallo-dependent phosphatases
superfamily: Metallo-dependent phosphatases
family: DR1281-like
domain: Hypothetical protein MPN349
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=80.18  E-value=2.4  Score=30.00  Aligned_cols=79  Identities=11%  Similarity=0.112  Sum_probs=54.9

Q ss_pred             HHHHHHHHcCC-eEEEeC-----C--CCHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHhhCCC-CCCCCccccccC-C
Q 046574           13 SLLLMRKAFKG-TFLVAG-----G--YDREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEFNAP-LNKYNRETFYVS-D   82 (104)
Q Consensus        13 ~~~~ir~~~~~-pvi~~G-----g--i~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~~g~~-l~~~d~~~~~~~-~   82 (104)
                      .+..+|+..+. -||++|     |  ||++.++++++.| +|.|-.|--...++++..-+.+... +.|..+..-++. .
T Consensus        25 ~Lp~Lr~~~~iDfVIaNgENaa~G~Git~k~~~eL~~~G-vDvIT~GNH~wd~kei~~~i~~~~~llRP~N~p~~~p~~~  103 (281)
T d1t71a_          25 NLAQLKSKYQADLVIVNAENTTHGKGLSLKHYEFLKEAG-VNYITMGNHTWFQKLDLAVVINKKDLVRPLNLDTSFAFHN  103 (281)
T ss_dssp             THHHHHHHHTCSEEEEECTBTTTTSSCCHHHHHHHHHHT-CCEEECCTTTTCCGGGHHHHTTCTTEECBSCBCTTSTTTT
T ss_pred             HhHHHHHHhCCCEEEECCccCCCCcCCCHHHHHHHHHhC-CcEEEcCchhhhchhhHHHHhhcccccccccccccccCCC
Confidence            45678888875 788875     3  4999999999999 8999999999999999887766432 344444332321 1


Q ss_pred             CCCCcccCCC
Q 046574           83 PVVGYTDYPF   92 (104)
Q Consensus        83 ~~~gy~d~p~   92 (104)
                      ...||.-|+.
T Consensus       104 pG~G~~i~~~  113 (281)
T d1t71a_         104 LGQGSLVFEF  113 (281)
T ss_dssp             SSBSEEEEEC
T ss_pred             CCceEEEEEc
Confidence            1356555543