Citrus Sinensis ID: 046579

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410------

MPPTKRTKRNLTITITSSSNHHYQASASVETIINNDDLLTEILLCLPIKSLLKFKAVSKHWLSLISNPIFSHRLRLVRKLISGLFVRRFTLRVNNPEYDFINLESNPSRAPFKSLTFVNDSYGIKVLQSCNGLLLCSSSRAYQPRRNYYVYNPTNKQYTILPRLHVDRGIFRSIFGVNLAFDPSKSAHYKVICVRNCDSLRDGHYQIEIYSSKTGPWRLSGGSFTAPSVINFRGGVFWNGAIHWVSTHGSSLYFDVDQEKLREMPMPPIPDEWEERRHQYFGESRGHLHLIEIYGPCTALFNVYEMKTDYSGWFVKYRVDLGGVTYVFPEMIRTYLDPEDLHYYGYSILCVVREENDDDSYLVLHLPKKAVRYNLKDRTFKKLHDVAPAGNQAEDESALQFRWFDAFQYTESLACV

cccccccccccccccccccccccccccccccccccHHHHHHHHccccHHHHHHHHHHHHHHHHHHcccHHHHHHHcccccccccEEEEEEccccccccEEEEcccccccccccccccccccccEEEEEEEccEEEEEcccccccccEEEEEEcccccEEEccccccccccccccEEEEEEEcccccccEEEEEEEEEccccccEEEEEEEEcccccEEEccccccccEEEEccccEEEcccEEEEEEccEEEEEEccccEEEEEcccccccccccccccEEEEEccEEEEEEEEcccccEEEEEEEcccccEEEEEEEEEcccEEEcccccEEccccccccccccEEEEEEEEEEcccEEEEEEEcccEEEEEEccccEEEEEEEcccccccccccccccccccccccEEcccEEc

ccccccccccccccccccccccccccccccHHcccHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcccHHHHHHccccccccEEEEEEEEEEccccccccccccccccccccccccccccccEEEEEEEccEEEEEEEccccccccEEEEEccccccEEEEcccccccccccccEEEEEEEcccccccEEEEEEEEcccccccEEEEEEEEcccccEEEEEccccccEEEEccccEEEEcEEEEEEcccEEEEEEcccccccccccccccccccccEEEEEEccccEEEEEEcccccEEEEEEEEEccccEEEEEEEEEEccccccccccccccEEEccccEEEEEEEEEEEEccccccEEEEEEEccEEEEEEEccccEEEcccccccccccccHHHHHcccccHHHHcHHHccc

mpptkrtkrnlTITItsssnhhyqaSASVETIINNDDLLTEILLCLPIKSLLKFKAVSKHWLSLISNPIFSHRLRLVRKLISGLFVRrftlrvnnpeydfinlesnpsrapfksltfvndsygIKVLQSCNglllcsssrayqprrnyyvynptnkqytilprlhvdrgifrsifgvnlafdpsksahyKVICvrncdslrdgHYQIEIyssktgpwrlsggsftapsvinfrggvfWNGAIHWVSthgsslyfdvdqeklrempmppipdeweerrhqyfgesrghLHLIEIYGPCTALFNVYEMKTDYSGWFVKYRVDlggvtyvfpemirtyldpedlhyygYSILCVVreendddsylvLHLPkkavrynlkdrtfkklhdvapagnqaedesalQFRWFDAFQYTESLACV

mpptkrtkrnltititsssnhhyqASASVETIINNDDLLTEILLCLPIKSLLKFKAVSKHWLSLisnpifshRLRLVRKLISGLFVRRFTLRVNNPEYDfinlesnpsrapFKSLTFVNDSYGIKVLQSCNGLLLCSSSRAYQPRRNYYVYNPTNKQYTILPRLHVDRGIFRSIFGVNLAFDPSKSAHYKVICVRNCDSLRDGHYQIEIyssktgpwrlsGGSFTAPSVINFRGGVFWNGAIHWVSTHGSSLYFDVDQEKLREMPMPPIPDEWEERRHQYFGESRGHLHLIEIYGPCTALFNVYEMKTDYSGWFVKYRVDLGGVTYVFPEMIRTYLDPEDLHYYGYSILCVVREENDDDSYLVLHLpkkavrynlkdrtfkKLHDVAPAGNQAEDESALQFRWFDAFQYTESLACV

**********************YQASASVETIINNDDLLTEILLCLPIKSLLKFKAVSKHWLSLISNPIFSHRLRLVRKLISGLFVRRFTLRVNNPEYDFINLESNPSRAPFKSLTFVNDSYGIKVLQSCNGLLLCSSSRAYQPRRNYYVYNPTNKQYTILPRLHVDRGIFRSIFGVNLAFDPSKSAHYKVICVRNCDSLRDGHYQIEIYSSKTGPWRLSGGSFTAPSVINFRGGVFWNGAIHWVSTHGSSLYFDVD*******************RHQYFGESRGHLHLIEIYGPCTALFNVYEMKTDYSGWFVKYRVDLGGVTYVFPEMIRTYLDPEDLHYYGYSILCVVREENDDDSYLVLHLPKKAVRYNLKDRTFKKLHDVA*********SALQFRWFDAFQYTESL***

************************************DLLTEILLCLPIKSLLKFKAVSKHWLSLISNPIFSHRLRLVRKLISGLFVRRFTLRVNNPEYDFINLESNPSRAPFKSLTFVNDSYGIKVLQSCNGLLLCSSSRAYQPRRNYYVYNPTNKQYTILPRLHVDRGIFRSIFGVNLAFDPSKSAHYKVICVRNCDSLRDGHYQIEIYSSKTGPWRLSGGSFTAPSVINFRGGVFWNGAIHWVSTHGSSLYFDVDQEKLREMPMPPIPDEWEERRHQYFGESRGHLHLIEIYGPCTALFNVYEMKTDYSGWFVKYRVDLGGVTYVFPEMIRTYLDPEDLHYYGYSILCVVREENDDDSYLVLHLPKKAVRYNLKDRTFKKLHDVAPAGNQAEDESALQFRWFDAFQYTESLACV

********RNLTITITSSSNHHYQASASVETIINNDDLLTEILLCLPIKSLLKFKAVSKHWLSLISNPIFSHRLRLVRKLISGLFVRRFTLRVNNPEYDFINLESNPSRAPFKSLTFVNDSYGIKVLQSCNGLLLCSSSRAYQPRRNYYVYNPTNKQYTILPRLHVDRGIFRSIFGVNLAFDPSKSAHYKVICVRNCDSLRDGHYQIEIYSSKTGPWRLSGGSFTAPSVINFRGGVFWNGAIHWVSTHGSSLYFDVDQEKLREMPMPPIPDEWEERRHQYFGESRGHLHLIEIYGPCTALFNVYEMKTDYSGWFVKYRVDLGGVTYVFPEMIRTYLDPEDLHYYGYSILCVVREENDDDSYLVLHLPKKAVRYNLKDRTFKKLHDVAPAGNQAEDESALQFRWFDAFQYTESLACV

*****************************ETIINNDDLLTEILLCLPIKSLLKFKAVSKHWLSLISNPIFSHRLRLVRKLISGLFVRRFTLRVNNPEYDFINLESNPSRAPFKSLTFVNDSYGIKVLQSCNGLLLCSSSRAYQPRRNYYVYNPTNKQYTILPRLHVDRGIFRSIFGVNLAFDPSKSAHYKVICVRNCDSLRDGHYQIEIYSSKTGPWRLSGGSFTAPSVINFRGGVFWNGAIHWVSTHGSSLYFDVDQEKLREMPMPPIPDEWEERRHQYFGESRGHLHLIEIYGPCTALFNVYEMKTDYSGWFVKYRVDLGGVTYVFPEMIRTYLDPEDLHYYGYSILCVVREENDDDSYLVLHLPKKAVRYNLKDRTFKKLHDVAPAGNQAEDESALQFRWFDAFQYTESLACV

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SSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		416	2.2.26 [Sep-21-2011]
Q9FLS0		420	F-box protein At5g07610 O	yes	no	0.896	0.888	0.396	5e-67
Q9FGY4		359	F-box protein At5g49610 O	no	no	0.653	0.757	0.297	5e-13
Q9LUP5		388	F-box/kelch-repeat protei	no	no	0.514	0.551	0.281	3e-11
Q8GXC7		427	F-box/kelch-repeat protei	no	no	0.555	0.540	0.274	9e-11
Q9LPW2		416	Putative F-box/kelch-repe	no	no	0.649	0.649	0.227	4e-10
Q94A64		418	F-box protein At5g03970 O	no	no	0.562	0.559	0.257	6e-10
Q9LUP8		388	Putative F-box protein At	no	no	0.521	0.559	0.246	7e-09
Q9C6J3		396	Putative F-box protein At	no	no	0.526	0.553	0.255	1e-08
Q9LUP1		381	Putative F-box/kelch-repe	no	no	0.449	0.490	0.274	1e-08
Q9LUU3		386	Putative F-box/kelch-repe	no	no	0.519	0.559	0.272	2e-08

>sp\|Q9FLS0\|FB253_ARATH F-box protein At5g07610 OS=Arabidopsis thaliana GN=At5g07610 PE=2 SV=1	Back alignment and function desciption

 Score =  255 bits (651), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 165/416 (39%), Positives = 239/416 (57%), Gaps = 43/416 (10%)

Query: 25  ASASVETIINNDDLLTEILLCLPIKSLLKFKAVSKHWLSLISNPIFSHR-LRLVRKL-IS 82
           +S+S   + + DD+L +IL  LPIK+LL+FK VSK WLSLI+NP+FS+R ++    L IS
Sbjct: 24  SSSSATIVADIDDVLIQILSFLPIKTLLRFKRVSKRWLSLITNPVFSNRVIKSNHPLPIS 83

Query: 83  GLFVRRFTLRVNNPEYDFINLESNPSRAPFKS---LTFVNDSYGIKVLQSCNGLLLCSSS 139
           G F+          +Y F++L+ + +     S   L F +    + ++QS NGLLLC  S
Sbjct: 84  GFFLH----SPREIKYSFVSLDDDATNQRISSSLPLWFTDHQTDMIIMQSTNGLLLCKCS 139

Query: 140 RAYQP--RRNYYVYNPTNKQYTILPRL--HVDRGIFRSIFGVNLAFDPSKSAHYKVICVR 195
            A       NYYVYNPT KQYT+L ++  H+          ++LAFDPS+S HYKV C+R
Sbjct: 140 CASSNHFNTNYYVYNPTTKQYTLLHQIAGHI---------ALSLAFDPSRSPHYKVFCLR 190

Query: 196 -----NCDSLRDGH-YQIEIYSSKTGPWRLSGGSFTAPSV-INFRGGVFWNGAIHWVS-T 247
                +  S  D   Y IE+YSS  G WR      T+PS  I F   VFWNGA++W   +
Sbjct: 191 GRSNNSFSSASDSELYHIEVYSSNEGLWRRVVPVPTSPSTFIEFSYSVFWNGAVNWYGFS 250

Query: 248 HGSSLYFDVDQEKLREMPMP-------PIPDEWEERRHQYFGESRGHLHLIEIYGPCTAL 300
               L FD++ ++++ +P+P       P+PD    R   +  ES+G+L+ IE+    ++ 
Sbjct: 251 SRDCLSFDINTQEIKILPLPDHEHEDEPLPD---PRILMFLDESQGNLYYIEVNNQSSSN 307

Query: 301 FNVYEMKTDYSGWFVKYRVDLGGVTYVFPEMIRTYLDPEDLHYYGYSILCVVREENDDDS 360
             VYEM+++ S W VKY VDL  +   FPEMIRT     D   Y +S++  V+EE D  S
Sbjct: 308 LRVYEMESNSSSWSVKYNVDLEPLAAAFPEMIRTEYY-TDRRIYAFSVIGFVKEETDAAS 366

Query: 361 YLVLHLPKKAVRYNLKDRTFKKLHDVAPAGNQAEDESALQFRWFDAFQYTESLACV 416
           Y++LH+P +AV+YN  D+TFKKL D     N A ++   +F+    FQ+ +SLA V
Sbjct: 367 YILLHIPNQAVKYNFIDKTFKKLCDFKSLVNDAPEDHFYRFQ--RTFQFIKSLANV 420

Arabidopsis thaliana (taxid: 3702)

>sp\|Q9FGY4\|FB341_ARATH F-box protein At5g49610 OS=Arabidopsis thaliana GN=At5g49610 PE=1 SV=1	Back alignment and function description

>sp\|Q9LUP5\|FBK59_ARATH F-box/kelch-repeat protein At3g17530 OS=Arabidopsis thaliana GN=At3g17530 PE=2 SV=2	Back alignment and function description

>sp\|Q8GXC7\|FBK50_ARATH F-box/kelch-repeat protein At3g06240 OS=Arabidopsis thaliana GN=At3g06240 PE=2 SV=1	Back alignment and function description

>sp\|Q9LPW2\|FBK2_ARATH Putative F-box/kelch-repeat protein At1g12870 OS=Arabidopsis thaliana GN=At1g12870 PE=4 SV=2	Back alignment and function description

>sp\|Q94A64\|FB251_ARATH F-box protein At5g03970 OS=Arabidopsis thaliana GN=At5g03970 PE=2 SV=1	Back alignment and function description

>sp\|Q9LUP8\|FB153_ARATH Putative F-box protein At3g17490 OS=Arabidopsis thaliana GN=At3g17490 PE=4 SV=1	Back alignment and function description

>sp\|Q9C6J3\|FB52_ARATH Putative F-box protein At1g50870 OS=Arabidopsis thaliana GN=At1g50870 PE=4 SV=1	Back alignment and function description

>sp\|Q9LUP1\|FBK61_ARATH Putative F-box/kelch-repeat protein At3g17570 OS=Arabidopsis thaliana GN=At3g17570 PE=4 SV=1	Back alignment and function description

>sp\|Q9LUU3\|FBK58_ARATH Putative F-box/kelch-repeat protein At3g17280 OS=Arabidopsis thaliana GN=At3g17280 PE=4 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		416
255570566		393	conserved hypothetical protein [Ricinus	0.925	0.979	0.505	1e-100
225443049		374	PREDICTED: F-box protein At5g07610 [Viti	0.860	0.957	0.514	3e-99
449488722		393	PREDICTED: F-box protein At5g07610-like	0.920	0.974	0.474	2e-95
449451982		393	PREDICTED: F-box protein At5g07610-like	0.920	0.974	0.472	2e-94
225446289		415	PREDICTED: F-box protein At5g07610 [Viti	0.923	0.925	0.473	1e-92
224109958		406	f-box family protein [Populus trichocarp	0.947	0.970	0.406	8e-79
255539871		332	hypothetical protein RCOM_1501190 [Ricin	0.574	0.719	0.549	2e-70
297806791		421	F box protein family [Arabidopsis lyrata	0.956	0.945	0.391	1e-68
38260634		421	F-box protein [Arabidopsis arenosa]	0.894	0.883	0.406	7e-68
38260688		421	F-box protein [Arabidopsis arenosa]	0.901	0.890	0.402	3e-67

>gi\|255570566\|ref\|XP_002526240.1\| conserved hypothetical protein [Ricinus communis] gi\|223534434\|gb\|EEF36137.1\| conserved hypothetical protein [Ricinus communis]	Back alignment and taxonomy information

 Score =  372 bits (955), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 201/398 (50%), Positives = 265/398 (66%), Gaps = 13/398 (3%)

Query: 25  ASASVETIINNDDLLTEILLCLPIKSLLKFKAVSKHWLSLISNPIFS--HRLRLVRKLIS 82
           +S S E I +N+DL+T+ILL LP+K LL+FK+VSK WLSLIS P FS  H LR     IS
Sbjct: 3   SSLSAEIIGSNEDLITQILLRLPVKPLLRFKSVSKQWLSLISTPHFSSLHTLRNPNHTIS 62

Query: 83  GLFVRRFTLRVNNP-EYDFINLESNPSRAPFKSLTFVNDSY-GIKVLQSCNGLLLCSSSR 140
            LF+R      N+P E+ F++L S+ S +   +     D + GIK+LQSCNGLLLCS+  
Sbjct: 63  ALFLR------NSPLEFKFLSLSSSSSSSSSSASPLSFDLFHGIKILQSCNGLLLCSTLP 116

Query: 141 AYQPRRNYYVYNPTNKQYTILPRLHVDRGIFR--SIFGVNLAFDPSKSAHYKVICVRNCD 198
               +RNYY+ NPT KQ   LP L  D       ++FG+NLAFDP KS +YKVICVR+  
Sbjct: 117 KIGQKRNYYISNPTTKQMFTLPSLVGDANAASPTTLFGLNLAFDPLKSCNYKVICVRSTT 176

Query: 199 SLRDGHYQIEIYSSKTGPWRLSGGSFTAPSVINFRGGVFWNGAIHWVSTHGSSLYFDVDQ 258
           +     YQIE Y S+   WRLSG  F AP  + F  GVFWNGAIHW+S  G+++YFD+D+
Sbjct: 177 N-SIYQYQIETYQSEIAAWRLSGLPFVAPFDMVFDNGVFWNGAIHWISATGNAIYFDMDR 235

Query: 259 EKLREMPMPPIPDEWEERRHQYFGESRGHLHLIEIYGPCTALFNVYEMKTDYSGWFVKYR 318
           E +  MP  P   EW +RR +YFGES GHLHLIEIYG  T  FNVYEM+ DYS W ++YR
Sbjct: 236 ECISSMPKLPFSYEWGKRRFRYFGESDGHLHLIEIYGLRTTQFNVYEMEKDYSFWRIRYR 295

Query: 319 VDLGGVTYVFPEMIRTYLDPEDLHYYGYSILCVVREENDDDSYLVLHLPKKAVRYNLKDR 378
           V L  V   FPEM+R+YLD  D +YY + +L +V E+  ++S L+LH+P K + YNLK++
Sbjct: 296 VQLDHVVAAFPEMVRSYLDAGDSNYYAFVVLSLVEEDATEESSLLLHIPGKVISYNLKNK 355

Query: 379 TFKKLHDVAPAGNQAEDESALQFRWFDAFQYTESLACV 416
           TFKK+ +++     +  + +LQF W DA+QY E+LACV
Sbjct: 356 TFKKVCELSYGTGGSRTKESLQFGWLDAYQYIETLACV 393

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|225443049\|ref\|XP_002269241.1\| PREDICTED: F-box protein At5g07610 [Vitis vinifera] gi\|297743579\|emb\|CBI36446.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|449488722\|ref\|XP_004158152.1\| PREDICTED: F-box protein At5g07610-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|449451982\|ref\|XP_004143739.1\| PREDICTED: F-box protein At5g07610-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|225446289\|ref\|XP_002267226.1\| PREDICTED: F-box protein At5g07610 [Vitis vinifera] gi\|296090309\|emb\|CBI40128.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|224109958\|ref\|XP_002315369.1\| f-box family protein [Populus trichocarpa] gi\|222864409\|gb\|EEF01540.1\| f-box family protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|255539871\|ref\|XP_002511000.1\| hypothetical protein RCOM_1501190 [Ricinus communis] gi\|223550115\|gb\|EEF51602.1\| hypothetical protein RCOM_1501190 [Ricinus communis]	Back alignment and taxonomy information

>gi\|297806791\|ref\|XP_002871279.1\| F box protein family [Arabidopsis lyrata subsp. lyrata] gi\|34013883\|gb\|AAQ56109.1\| F box protein family [Arabidopsis lyrata subsp. lyrata] gi\|297317116\|gb\|EFH47538.1\| F box protein family [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|38260634\|gb\|AAR15451.1\| F-box protein [Arabidopsis arenosa]	Back alignment and taxonomy information

>gi\|38260688\|gb\|AAR15502.1\| F-box protein [Arabidopsis arenosa]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		416
TAIR\|locus:2160334		420	AT5G07610 "AT5G07610" [Arabido	0.954	0.945	0.391	2.2e-66
UNIPROTKB\|Q6AT88		309	OSJNBa0069I13.11 "Os05g0139300	0.403	0.543	0.341	5.7e-14
TAIR\|locus:2157834		359	AT5G49610 "AT5G49610" [Arabido	0.658	0.763	0.299	1e-13
TAIR\|locus:2090567		388	AT3G17530 "AT3G17530" [Arabido	0.509	0.546	0.294	1.2e-11
TAIR\|locus:2082410		427	AT3G06240 "AT3G06240" [Arabido	0.338	0.330	0.284	1.6e-11
TAIR\|locus:2076196		364	AT3G23880 "AT3G23880" [Arabido	0.519	0.593	0.268	2.9e-11
TAIR\|locus:2150665		418	AT5G03970 "AT5G03970" [Arabido	0.588	0.586	0.267	5.6e-11
TAIR\|locus:2010316		416	AT1G12870 "AT1G12870" [Arabido	0.665	0.665	0.254	1.6e-10
TAIR\|locus:2014190		364	AT1G64290 "AT1G64290" [Arabido	0.526	0.601	0.242	3.1e-10
TAIR\|locus:2090507		388	AT3G17490 "AT3G17490" [Arabido	0.528	0.567	0.25	6.2e-10

TAIR\|locus:2160334 AT5G07610 "AT5G07610" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 675 (242.7 bits), Expect = 2.2e-66, P = 2.2e-66
 Identities = 172/439 (39%), Positives = 246/439 (56%)

Query:     1 MPPTKRTKRNLTITITSSSNHHYQASASVETIINNDDLLTEILLCLPIKSLLKFKAVSKH 60
             M    RT+     +  S  N  + +S+S   + + DD+L +IL  LPIK+LL+FK VSK 
Sbjct:     1 MSSCSRTRTKAPRSARSRRNGGF-SSSSATIVADIDDVLIQILSFLPIKTLLRFKRVSKR 59

Query:    61 WLSLISNPIFSHR-LRLVRKL-ISGLFVRRFTLRVNNPEYDFINLESNPSRAPFKS---L 115
             WLSLI+NP+FS+R ++    L ISG F+          +Y F++L+ + +     S   L
Sbjct:    60 WLSLITNPVFSNRVIKSNHPLPISGFFLHS----PREIKYSFVSLDDDATNQRISSSLPL 115

Query:   116 TFVNDSYGIKVLQSCNGLLLCSSSRAYQPR--RNYYVYNPTNKQYTILPRLHVDRGIFRS 173
              F +    + ++QS NGLLLC  S A       NYYVYNPT KQYT+L   H   G    
Sbjct:   116 WFTDHQTDMIIMQSTNGLLLCKCSCASSNHFNTNYYVYNPTTKQYTLL---HQIAGHI-- 170

Query:   174 IFGVNLAFDPSKSAHYKVICVR-----NCDSLRDGH-YQIEIYSSKTGPWRLSGGSFTAP 227
                ++LAFDPS+S HYKV C+R     +  S  D   Y IE+YSS  G WR      T+P
Sbjct:   171 --ALSLAFDPSRSPHYKVFCLRGRSNNSFSSASDSELYHIEVYSSNEGLWRRVVPVPTSP 228

Query:   228 SV-INFRGGVFWNGAIHWVS-THGSSLYFDVDQEKLREMPMP-------PIPDEWEERRH 278
             S  I F   VFWNGA++W   +    L FD++ ++++ +P+P       P+PD    R  
Sbjct:   229 STFIEFSYSVFWNGAVNWYGFSSRDCLSFDINTQEIKILPLPDHEHEDEPLPDP---RIL 285

Query:   279 QYFGESRGHLHLIEIYGPCTALFNVYEMKTDYSGWFVKYRVDLGGVTYVFPEMIRT-YLD 337
              +  ES+G+L+ IE+    ++   VYEM+++ S W VKY VDL  +   FPEMIRT Y  
Sbjct:   286 MFLDESQGNLYYIEVNNQSSSNLRVYEMESNSSSWSVKYNVDLEPLAAAFPEMIRTEYYT 345

Query:   338 PEDLHYYGYSILCVVREENDDDSYLVLHLPKKAVRYNLKDRTFKKLHDVAPAGNQAEDES 397
               D   Y +S++  V+EE D  SY++LH+P +AV+YN  D+TFKKL D     N A ++ 
Sbjct:   346 --DRRIYAFSVIGFVKEETDAASYILLHIPNQAVKYNFIDKTFKKLCDFKSLVNDAPEDH 403

Query:   398 ALQFRWFDAFQYTESLACV 416
               +F+    FQ+ +SLA V
Sbjct:   404 FYRFQ--RTFQFIKSLANV 420

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

UNIPROTKB\|Q6AT88 OSJNBa0069I13.11 "Os05g0139300 protein" [Oryza sativa Japonica Group (taxid:39947)]	Back alignment and assigned GO terms

TAIR\|locus:2157834 AT5G49610 "AT5G49610" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2090567 AT3G17530 "AT3G17530" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2082410 AT3G06240 "AT3G06240" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2076196 AT3G23880 "AT3G23880" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2150665 AT5G03970 "AT5G03970" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2010316 AT1G12870 "AT1G12870" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2014190 AT1G64290 "AT1G64290" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2090507 AT3G17490 "AT3G17490" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9FLS0	FB253_ARATH	No assigned EC number	0.3966	0.8966	0.8880	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		416
TIGR01640		230	TIGR01640, F_box_assoc_1, F-box protein interactio	3e-07
smart00256		41	smart00256, FBOX, A Receptor for Ubiquitination Ta	1e-05
pfam00646		48	pfam00646, F-box, F-box domain	8e-05
pfam12937		47	pfam12937, F-box-like, F-box-like	0.001

>gnl\|CDD\|233502 TIGR01640, F_box_assoc_1, F-box protein interaction domain	Back alignment and domain information

 Score = 50.8 bits (122), Expect = 3e-07
 Identities = 36/151 (23%), Positives = 62/151 (41%), Gaps = 24/151 (15%)

Query: 127 LQSCNGLLLCSSSRAYQPRRNYYVYNPTNKQYTILPRL---HVDRGIFRSIFGVNLAFDP 183
           +  C+GL+ C S           V+NP+  Q   LP       ++       G    +DP
Sbjct: 1   VVPCDGLI-CFSYGKRL-----VVWNPSTGQSRWLPTPKSRRSNKESDTYFLG----YDP 50

Query: 184 SKSAHYKVICVRNCDSLRDGHYQIEIYSSKTGPWRLSGGSFTAPSVINFRGGVFWNGAIH 243
            +   YKV+C  +    R+   + ++Y+  +  WR    S   P       GV  NG ++
Sbjct: 51  IEK-QYKVLCFSDRSGNRN-QSEHQVYTLGSNSWRTIECSP--PHHPLKSRGVCINGVLY 106

Query: 244 WV--STHGSSLY----FDVDQEKLREM-PMP 267
           ++  +   +  Y    FDV  E+ +E  P+P
Sbjct: 107 YLAYTLKTNPDYFIVSFDVSSERFKEFIPLP 137

This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain. Length = 230

>gnl\|CDD\|197608 smart00256, FBOX, A Receptor for Ubiquitination Targets	Back alignment and domain information

>gnl\|CDD\|201368 pfam00646, F-box, F-box domain	Back alignment and domain information

>gnl\|CDD\|221867 pfam12937, F-box-like, F-box-like	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		416
TIGR01640		230	F_box_assoc_1 F-box protein interaction domain. Th	100.0
PLN03215		373	ascorbic acid mannose pathway regulator 1; Provisi	99.64
PF07734		164	FBA_1: F-box associated; InterPro: IPR006527 This	99.49
PF08268		129	FBA_3: F-box associated domain; InterPro: IPR01318	99.48
PHA02713		557	hypothetical protein; Provisional	99.0
PHA03098		534	kelch-like protein; Provisional	98.83
KOG4441		571	consensus Proteins containing BTB/POZ and Kelch do	98.83
KOG4441		571	consensus Proteins containing BTB/POZ and Kelch do	98.8
PF12937		47	F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B	98.73
PHA02713		557	hypothetical protein; Provisional	98.72
PLN02153		341	epithiospecifier protein	98.71
PLN02193		470	nitrile-specifier protein	98.66
smart00256		41	FBOX A Receptor for Ubiquitination Targets.	98.59
PHA02790		480	Kelch-like protein; Provisional	98.54
TIGR03547		346	muta_rot_YjhT mutatrotase, YjhT family. Members of	98.5
PF00646		48	F-box: F-box domain; InterPro: IPR001810 The F-box	98.45
PLN02153		341	epithiospecifier protein	98.44
TIGR03548		323	mutarot_permut cyclically-permuted mutatrotase fam	98.43
PHA03098		534	kelch-like protein; Provisional	98.38
PHA02790		480	Kelch-like protein; Provisional	98.35
PLN02193		470	nitrile-specifier protein	98.31
PRK14131		376	N-acetylneuraminic acid mutarotase; Provisional	98.25
TIGR03548		323	mutarot_permut cyclically-permuted mutatrotase fam	97.82
PRK14131		376	N-acetylneuraminic acid mutarotase; Provisional	97.74
TIGR03547		346	muta_rot_YjhT mutatrotase, YjhT family. Members of	97.33
KOG4693		392	consensus Uncharacterized conserved protein, conta	97.32
KOG4693		392	consensus Uncharacterized conserved protein, conta	97.27
KOG2120		419	consensus SCF ubiquitin ligase, Skp2 component [Po	97.21
KOG0379		482	consensus Kelch repeat-containing proteins [Genera	97.02
KOG0379		482	consensus Kelch repeat-containing proteins [Genera	96.89
PF07762		131	DUF1618: Protein of unknown function (DUF1618); In	96.84
KOG1230		521	consensus Protein containing repeated kelch motifs	96.27
KOG2997		366	consensus F-box protein FBX9 [General function pre	95.72
KOG0281		499	consensus Beta-TrCP (transducin repeats containing	95.45
PF13964		50	Kelch_6: Kelch motif	94.87
PF13360		238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	94.61
KOG1230		521	consensus Protein containing repeated kelch motifs	94.27
PF02191		250	OLF: Olfactomedin-like domain; InterPro: IPR003112	91.44
PRK11138		394	outer membrane biogenesis protein BamB; Provisiona	91.35
PF13964		50	Kelch_6: Kelch motif	91.23
PF07893		342	DUF1668: Protein of unknown function (DUF1668); In	89.92
TIGR01640		230	F_box_assoc_1 F-box protein interaction domain. Th	88.62
PRK11138		394	outer membrane biogenesis protein BamB; Provisiona	87.73
smart00284		255	OLF Olfactomedin-like domains.	85.86
PF01344		47	Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is	85.72
KOG4152		830	consensus Host cell transcription factor HCFC1 [Ce	85.64
PF07646		49	Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is	84.83
KOG4341		483	consensus F-box protein containing LRR [General fu	84.09
PF07893		342	DUF1668: Protein of unknown function (DUF1668); In	83.58
PF13418		49	Kelch_4: Galactose oxidase, central domain; PDB: 2	82.82
PF10282		345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	81.91
TIGR03300		377	assembly_YfgL outer membrane assembly lipoprotein	81.35
PF13415		49	Kelch_3: Galactose oxidase, central domain	80.74

>TIGR01640 F_box_assoc_1 F-box protein interaction domain	Back alignment and domain information

Probab=100.00  E-value=8.7e-31  Score=237.36  Aligned_cols=219  Identities=19%  Similarity=0.301  Sum_probs=156.7

Q ss_pred             EeeeCceEEeeecCCCCCCceEEEEccCCcceEecCCCCcCCCcceeeeeEEEEeCCCCCCCeEEEEEEecCCCCCCceE
Q 046579          127 LQSCNGLLLCSSSRAYQPRRNYYVYNPTNKQYTILPRLHVDRGIFRSIFGVNLAFDPSKSAHYKVICVRNCDSLRDGHYQ  206 (416)
Q Consensus       127 ~~s~~GLvl~~~~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~l~~d~~~~~~ykVv~~~~~~~~~~~~~~  206 (416)
                      ++|||||||+...      ..++||||+||+++.||+++...... ....++||||+. +++||||++...... .....
T Consensus         1 ~~sCnGLlc~~~~------~~~~V~NP~T~~~~~LP~~~~~~~~~-~~~~~~~G~d~~-~~~YKVv~~~~~~~~-~~~~~   71 (230)
T TIGR01640         1 VVPCDGLICFSYG------KRLVVWNPSTGQSRWLPTPKSRRSNK-ESDTYFLGYDPI-EKQYKVLCFSDRSGN-RNQSE   71 (230)
T ss_pred             CcccceEEEEecC------CcEEEECCCCCCEEecCCCCCccccc-ccceEEEeeccc-CCcEEEEEEEeecCC-CCCcc
Confidence            4689999988752      56999999999999999766421111 112578999997 789999999775321 13468


Q ss_pred             EEEEECCCCCeeeccCCCccccccccCCcEEEccEEEEEeeCC------cEEEEEcCCceEe-ecCCCCCCCccccccee
Q 046579          207 IEIYSSKTGPWRLSGGSFTAPSVINFRGGVFWNGAIHWVSTHG------SSLYFDVDQEKLR-EMPMPPIPDEWEERRHQ  279 (416)
Q Consensus       207 ~~vyss~t~~W~~~~~~~~~~~~~~~~~~v~~~G~lyw~~~~~------~il~fD~~~e~~~-~i~~P~~~~~~~~~~~~  279 (416)
                      ++||++++++||.+....+.  ......+|++||.+||++...      .|++||+++|+|+ .|++|......  ....
T Consensus        72 ~~Vys~~~~~Wr~~~~~~~~--~~~~~~~v~~~G~lyw~~~~~~~~~~~~IvsFDl~~E~f~~~i~~P~~~~~~--~~~~  147 (230)
T TIGR01640        72 HQVYTLGSNSWRTIECSPPH--HPLKSRGVCINGVLYYLAYTLKTNPDYFIVSFDVSSERFKEFIPLPCGNSDS--VDYL  147 (230)
T ss_pred             EEEEEeCCCCccccccCCCC--ccccCCeEEECCEEEEEEEECCCCCcEEEEEEEcccceEeeeeecCcccccc--ccce
Confidence            99999999999998632221  112234999999999998642      6999999999999 58888643211  1124


Q ss_pred             EEEEeCCeEEEEEEecCCcCeEEEEEEeCC-CCCceEEEEEcccccccccccchhccCCCCCCceeeeEEEEeecCCCCC
Q 046579          280 YFGESRGHLHLIEIYGPCTALFNVYEMKTD-YSGWFVKYRVDLGGVTYVFPEMIRTYLDPEDLHYYGYSILCVVREENDD  358 (416)
Q Consensus       280 ~l~~~~G~L~~v~~~~~~~~~l~iW~l~~~-~~~W~~~~~i~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (416)
                      .|++.+|+||++..... ...++||+|+++ ...|++.++|++..+    +.+.           ....+.++.+    +
T Consensus       148 ~L~~~~G~L~~v~~~~~-~~~~~IWvl~d~~~~~W~k~~~i~~~~~----~~~~-----------~~~~~~~~~~----~  207 (230)
T TIGR01640       148 SLINYKGKLAVLKQKKD-TNNFDLWVLNDAGKQEWSKLFTVPIPPL----PDLV-----------DDNFLSGFTD----K  207 (230)
T ss_pred             EEEEECCEEEEEEecCC-CCcEEEEEECCCCCCceeEEEEEcCcch----hhhh-----------hheeEeEEee----C
Confidence            68999999999987532 245999999975 457999999986432    2222           1134677765    4


Q ss_pred             CcEEEEeeC--C-eEEEEEcCCC
Q 046579          359 DSYLVLHLP--K-KAVRYNLKDR  378 (416)
Q Consensus       359 ~~~i~l~~~--~-~l~~ydl~~~  378 (416)
                      +++++...+  . .++.||++++
T Consensus       208 g~I~~~~~~~~~~~~~~y~~~~~  230 (230)
T TIGR01640       208 GEIVLCCEDENPFYIFYYNVGEN  230 (230)
T ss_pred             CEEEEEeCCCCceEEEEEeccCC
Confidence            666666543  3 4999999875

>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional	Back alignment and domain information

>PF07734 FBA_1: F-box associated; InterPro: IPR006527 This domain occurs in a diverse superfamily of genes in plants	Back alignment and domain information

>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants	Back alignment and domain information

>PHA02713 hypothetical protein; Provisional	Back alignment and domain information

>PHA03098 kelch-like protein; Provisional	Back alignment and domain information

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]	Back alignment and domain information

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]	Back alignment and domain information

>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B	Back alignment and domain information

>PHA02713 hypothetical protein; Provisional	Back alignment and domain information

>PLN02153 epithiospecifier protein	Back alignment and domain information

>PLN02193 nitrile-specifier protein	Back alignment and domain information

>smart00256 FBOX A Receptor for Ubiquitination Targets	Back alignment and domain information

>PHA02790 Kelch-like protein; Provisional	Back alignment and domain information

>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family	Back alignment and domain information

>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]	Back alignment and domain information

>PLN02153 epithiospecifier protein	Back alignment and domain information

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein	Back alignment and domain information

>PHA03098 kelch-like protein; Provisional	Back alignment and domain information

>PHA02790 Kelch-like protein; Provisional	Back alignment and domain information

>PLN02193 nitrile-specifier protein	Back alignment and domain information

>PRK14131 N-acetylneuraminic acid mutarotase; Provisional	Back alignment and domain information

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein	Back alignment and domain information

>PRK14131 N-acetylneuraminic acid mutarotase; Provisional	Back alignment and domain information

>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family	Back alignment and domain information

>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]	Back alignment and domain information

>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]	Back alignment and domain information

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]	Back alignment and domain information

>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]	Back alignment and domain information

>PF07762 DUF1618: Protein of unknown function (DUF1618); InterPro: IPR011676 The proteins of this entry are mainly hypothetical proteins expressed by Oryza sativa	Back alignment and domain information

>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]	Back alignment and domain information

>KOG2997 consensus F-box protein FBX9 [General function prediction only]	Back alignment and domain information

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]	Back alignment and domain information

>PF13964 Kelch_6: Kelch motif	Back alignment and domain information

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A	Back alignment and domain information

>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]	Back alignment and domain information

>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []	Back alignment and domain information

>PRK11138 outer membrane biogenesis protein BamB; Provisional	Back alignment and domain information

>PF13964 Kelch_6: Kelch motif	Back alignment and domain information

>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function	Back alignment and domain information

>TIGR01640 F_box_assoc_1 F-box protein interaction domain	Back alignment and domain information

>PRK11138 outer membrane biogenesis protein BamB; Provisional	Back alignment and domain information

>smart00284 OLF Olfactomedin-like domains	Back alignment and domain information

>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []	Back alignment and domain information

>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]	Back alignment and domain information

>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []	Back alignment and domain information

>KOG4341 consensus F-box protein containing LRR [General function prediction only]	Back alignment and domain information

>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function	Back alignment and domain information

>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B	Back alignment and domain information

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3	Back alignment and domain information

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL	Back alignment and domain information

>PF13415 Kelch_3: Galactose oxidase, central domain	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		416
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-06
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-05
2ast_B		336	S-phase kinase-associated protein 2; SCF-substrate	1e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score = 48.7 bits (115), Expect = 3e-06
 Identities = 62/451 (13%), Positives = 118/451 (26%), Gaps = 138/451 (30%)

Query: 20  NHHYQASASVETIINNDDLLTEILLCLPIKSLLKFKAVSKHWLSLISNPIFSH------R 73
           +HH+    + E      D+L+              K V     S++S     H       
Sbjct: 3   HHHHMDFETGEHQYQYKDILSVFED--AFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDA 60

Query: 74  LRLVRKLISGLF------VRRFTLRVNNPEYDFINLESNPSRAPFKSLTFVNDSYGIKVL 127
           +    +L   L       V++F   V    Y F+        +P K              
Sbjct: 61  VSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFL-------MSPIK-------------- 99

Query: 128 QSCNGLLLCSSSRAYQPRRNYYVYNPT-NKQYT---ILPRLHVDRGIFRSIFGVNLAFDP 183
                      +   QP     +Y    ++ Y    +  + +V R               
Sbjct: 100 -----------TEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSR--------------- 133

Query: 184 SKSAHYKVICVRNC-DSLRDGHYQIEIYSSKTGPWRLSGGSFTAPSVIN-------FRGG 235
                   + +R     LR     + I     G    SG ++ A  V             
Sbjct: 134 ----LQPYLKLRQALLELRPAKN-VLIDGVL-G----SGKTWVALDVCLSYKVQCKMDFK 183

Query: 236 VFWNGAIHWVSTHG-----SSLYFDVDQ---EKLREMPMPPIPDEWEERRHQYFGESRGH 287
           +FW    +  S          L + +D     +        +     +   +   +S+ +
Sbjct: 184 IFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPY 243

Query: 288 LH--LI--EIYGP---------CTALF-----NVYEMKTDYSGWFVKYRVDLGGVTYVFP 329
            +  L+   +            C  L       V    TD+        + L   +    
Sbjct: 244 ENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQV----TDFLSAATTTHISLDHHSMTLT 299

Query: 330 E-----MIRTYLD--PEDLHYYGYSILCVVREENDDDSYLVLHLPKKAVRY------NLK 376
                 ++  YLD  P+DL             E    +   L +  +++R       N K
Sbjct: 300 PDEVKSLLLKYLDCRPQDL-----------PREVLTTNPRRLSIIAESIRDGLATWDNWK 348

Query: 377 DRTFKKLHDVAPAGNQAEDESALQFRWFDAF 407
                KL  +  +     + +  + + FD  
Sbjct: 349 HVNCDKLTTIIESSLNVLEPAEYR-KMFDRL 378

PyMOL of 1vt4

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		416
3ii7_A		306	Kelch-like protein 7; protein-binding, kelch-repea	99.3
2woz_A		318	Kelch repeat and BTB domain-containing protein 10;	99.17
1zgk_A		308	Kelch-like ECH-associated protein 1; beta-propelle	99.14
2xn4_A		302	Kelch-like protein 2; structural protein, cytoskel	99.14
4asc_A		315	Kelch repeat and BTB domain-containing protein 5;	99.12
2vpj_A		301	Kelch-like protein 12; adaptor protein, WNT signal	99.09
3ii7_A		306	Kelch-like protein 7; protein-binding, kelch-repea	99.03
1zgk_A		308	Kelch-like ECH-associated protein 1; beta-propelle	99.0
2vpj_A		301	Kelch-like protein 12; adaptor protein, WNT signal	98.97
2xn4_A		302	Kelch-like protein 2; structural protein, cytoskel	98.97
1fs1_A		53	SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L	98.97
2e31_A		297	FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui	98.78
2uvk_A		357	YJHT; unknown function, hypothetical protein, sial	98.75
4asc_A		315	Kelch repeat and BTB domain-containing protein 5;	98.67
2woz_A		318	Kelch repeat and BTB domain-containing protein 10;	98.65
2uvk_A		357	YJHT; unknown function, hypothetical protein, sial	98.61
2zwa_A		695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	98.47
2ovr_B		445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	98.28
3v7d_B		464	Cell division control protein 4; WD 40 domain, pho	98.25
1p22_A		435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	98.16
1k3i_A		656	Galactose oxidase precursor; blade beta propeller,	97.94
2zwa_A		695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	97.82
3l2o_B		312	F-box only protein 4; small G protein fold, UBL co	97.64
2ast_B		336	S-phase kinase-associated protein 2; SCF-substrate	97.31
1k3i_A		656	Galactose oxidase precursor; blade beta propeller,	97.3
2p1m_B		594	Transport inhibitor response 1 protein; F-BOX, leu	96.27
3ogk_B		592	Coronatine-insensitive protein 1; leucine rich rep	95.61
3dsm_A		328	Uncharacterized protein bacuni_02894; seven_blated	91.01
1ri6_A		343	Putative isomerase YBHE; 7-bladed propeller, enzym	90.1
3q7m_A		376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	87.75
3dsm_A		328	Uncharacterized protein bacuni_02894; seven_blated	87.57
3jro_A		753	Fusion protein of protein transport protein SEC13	87.21
3jrp_A		379	Fusion protein of protein transport protein SEC13	85.5
3no2_A		276	Uncharacterized protein; six-bladed beta-propeller	83.42
4gga_A		420	P55CDC, cell division cycle protein 20 homolog; ce	83.35
3q7m_A		376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	82.97
3u4y_A		331	Uncharacterized protein; structural genomics, PSI-	82.78

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}	Back alignment and structure

Probab=99.30  E-value=1.4e-09  Score=101.27  Aligned_cols=218  Identities=14%  Similarity=0.072  Sum_probs=134.1

Q ss_pred             eeeCceEEeeecCCCCCCceEEEEccCCcceEecCCCCcCCCcceeeeeEEEEeCCCCCCCeEEEEEEecCCCCCCceEE
Q 046579          128 QSCNGLLLCSSSRAYQPRRNYYVYNPTNKQYTILPRLHVDRGIFRSIFGVNLAFDPSKSAHYKVICVRNCDSLRDGHYQI  207 (416)
Q Consensus       128 ~s~~GLvl~~~~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~l~~d~~~~~~ykVv~~~~~~~~~~~~~~~  207 (416)
                      +..+|.|++..+........++++||.|++|..+++++.++..    ..++ .++      -+++.+............+
T Consensus        52 ~~~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~----~~~~-~~~------~~iyv~GG~~~~~~~~~~~  120 (306)
T 3ii7_A           52 VFWDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDS----LAAC-AAE------GKIYTSGGSEVGNSALYLF  120 (306)
T ss_dssp             EEETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBS----CEEE-EET------TEEEEECCBBTTBSCCCCE
T ss_pred             EEECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccc----eeEE-EEC------CEEEEECCCCCCCcEeeeE
Confidence            3456766666543222345699999999999999887754332    1211 121      2455555443222234479


Q ss_pred             EEEECCCCCeeeccCCCccccccccCCcEEEccEEEEEee----------CCcEEEEEcCCceEeecCCCCCCCcccccc
Q 046579          208 EIYSSKTGPWRLSGGSFTAPSVINFRGGVFWNGAIHWVST----------HGSSLYFDVDQEKLREMPMPPIPDEWEERR  277 (416)
Q Consensus       208 ~vyss~t~~W~~~~~~~~~~~~~~~~~~v~~~G~lyw~~~----------~~~il~fD~~~e~~~~i~~P~~~~~~~~~~  277 (416)
                      ++|+..+++|+..... +.  .......+.++|.+|.+..          ...+..||+.+++|+.++..+.+..     
T Consensus       121 ~~~d~~~~~W~~~~~~-p~--~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~-----  192 (306)
T 3ii7_A          121 ECYDTRTESWHTKPSM-LT--QRCSHGMVEANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARK-----  192 (306)
T ss_dssp             EEEETTTTEEEEECCC-SS--CCBSCEEEEETTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSSCCB-----
T ss_pred             EEEeCCCCceEeCCCC-cC--CcceeEEEEECCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccchhh-----
Confidence            9999999999987432 11  1234456788999999864          2458899999999998852222111     


Q ss_pred             eeEEEEeCCeEEEEEEecCCcCeEEEEEEeCCCCCceEEEEEcccccccccccchhccCCCCCCceeeeEEEEeecCCCC
Q 046579          278 HQYFGESRGHLHLIEIYGPCTALFNVYEMKTDYSGWFVKYRVDLGGVTYVFPEMIRTYLDPEDLHYYGYSILCVVREEND  357 (416)
Q Consensus       278 ~~~l~~~~G~L~~v~~~~~~~~~l~iW~l~~~~~~W~~~~~i~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  357 (416)
                      ....+..+|+|+++.........-.||.++-...+|.....+         |.-.           .......+      
T Consensus       193 ~~~~~~~~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~---------p~~r-----------~~~~~~~~------  246 (306)
T 3ii7_A          193 NHGLVFVKDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPM---------PWKG-----------VTVKCAAV------  246 (306)
T ss_dssp             SCEEEEETTEEEEECCEETTEEBCCEEEEETTTTEEEECCCC---------SCCB-----------SCCEEEEE------
T ss_pred             cceEEEECCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCC---------CCCc-----------cceeEEEE------
Confidence            123556799999986554332234678888666789866432         1111           11122222      


Q ss_pred             CCcEEEEee------CCeEEEEEcCCCcEEEeeecCCCC
Q 046579          358 DDSYLVLHL------PKKAVRYNLKDRTFKKLHDVAPAG  390 (416)
Q Consensus       358 ~~~~i~l~~------~~~l~~ydl~~~~~~~v~~~~~~~  390 (416)
                      ++.++++..      ...+..||+++++|+.+..+...+
T Consensus       247 ~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r  285 (306)
T 3ii7_A          247 GSIVYVLAGFQGVGRLGHILEYNTETDKWVANSKVRAFP  285 (306)
T ss_dssp             TTEEEEEECBCSSSBCCEEEEEETTTTEEEEEEEEECCS
T ss_pred             CCEEEEEeCcCCCeeeeeEEEEcCCCCeEEeCCCccccc
Confidence            244444432      258999999999999998776543

PyMOL of 3ii7

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}	Back alignment and structure

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A	Back alignment and structure

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}	Back alignment and structure

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}	Back alignment and structure

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}	Back alignment and structure

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}	Back alignment and structure

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A	Back alignment and structure

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}	Back alignment and structure

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}	Back alignment and structure

>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E	Back alignment and structure

>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A	Back alignment and structure

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}	Back alignment and structure

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}	Back alignment and structure

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}	Back alignment and structure

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}	Back alignment and structure

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*	Back alignment and structure

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*	Back alignment and structure

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*	Back alignment and structure

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1	Back alignment and structure

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A	Back alignment and structure

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*	Back alignment and structure

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}	Back alignment and structure

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A	Back alignment and structure

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A	Back alignment and structure

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*	Back alignment and structure

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*	Back alignment and structure

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}	Back alignment and structure

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1	Back alignment and structure

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A	Back alignment and structure

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}	Back alignment and structure

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}	Back alignment and structure

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}	Back alignment and structure

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}	Back alignment and structure

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A	Back alignment and structure

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A	Back alignment and structure

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		416
d1fs1a1		41	a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [	1e-05
d1p22a1		118	a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (b	5e-04

>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 41	Back information, alignment and structure


class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.6 bits (93), Expect = 1e-05
 Identities = 14/35 (40%), Positives = 17/35 (48%)

Query: 36 DDLLTEILLCLPIKSLLKFKAVSKHWLSLISNPIF 70
          D+LL  I  CL +  LLK   V K W  L S+   
Sbjct: 6  DELLLGIFSCLCLPELLKVSGVCKRWYRLASDESL 40

PyMOL of d1fs1a1

>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 118	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		416
d1fs1a1		41	Skp2 {Human (Homo sapiens) [TaxId: 9606]}	99.11
d1zgka1		288	Kelch-like ECH-associated protein 1, KEAP1 {Human	98.47
d2ovrb1		102	F-box/WD repeat-containing protein 7, FBXW7 {Human	98.39
d1nexb1		100	Cdc4 F-box and linker domains {Baker's yeast (Sacc	98.34
d1zgka1		288	Kelch-like ECH-associated protein 1, KEAP1 {Human	98.29
d1p22a1		118	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	98.07
d1k3ia3		387	Galactose oxidase, central domain {Fungi (Fusarium	97.65
d1k3ia3		387	Galactose oxidase, central domain {Fungi (Fusarium	97.18

>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.11  E-value=2.6e-11  Score=74.80  Aligned_cols=38  Identities=37%  Similarity=0.586  Sum_probs=35.9

Q ss_pred             cCCHHHHHHHHccCChhhhhhhhcchHhHhhhhcCccc
Q 046579           33 INNDDLLTEILLCLPIKSLLKFKAVSKHWLSLISNPIF   70 (416)
Q Consensus        33 ~LPddll~eIL~rLP~~~l~r~~~VcK~W~~li~s~~F   70 (416)
                      .||+|++.+||++||+++++++++|||+|+.++.++.+
T Consensus         3 ~LP~eil~~If~~L~~~dl~~~~~Vcr~w~~l~~~~~l   40 (41)
T d1fs1a1           3 SLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESL   40 (41)
T ss_dssp             SSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHTCGGG
T ss_pred             cCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCccc
Confidence            59999999999999999999999999999999988764

PyMOL of d1fs1a1

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.47  E-value=1.5e-05  Score=70.46  Aligned_cols=199  Identities=16%  Similarity=0.146  Sum_probs=118.0

Q ss_pred             ceEEEEccCCcceEecCCCCcCCCcceeeeeEEEEeCCCCCCCeEEEEEEecCCCCCCceEEEEEECCCCCeeeccCCCc
Q 046579          146 RNYYVYNPTNKQYTILPRLHVDRGIFRSIFGVNLAFDPSKSAHYKVICVRNCDSLRDGHYQIEIYSSKTGPWRLSGGSFT  225 (416)
Q Consensus       146 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~l~~d~~~~~~ykVv~~~~~~~~~~~~~~~~vyss~t~~W~~~~~~~~  225 (416)
                      ..++++||.|.+|..+|+++.++..    .+.. .++      -|++.+...... ......++|+..++.|........
T Consensus        70 ~~~~~yd~~~~~w~~~~~~p~~r~~----~~~~-~~~------~~i~~~gg~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  137 (288)
T d1zgka1          70 SALDCYNPMTNQWSPCAPMSVPRNR----IGVG-VID------GHIYAVGGSHGC-IHHNSVERYEPERDEWHLVAPMLT  137 (288)
T ss_dssp             CCEEEEETTTTEEEECCCCSSCCBT----CEEE-EET------TEEEEECCEETT-EECCCEEEEETTTTEEEECCCCSS
T ss_pred             chhhhcccccccccccccccceecc----eecc-ccc------eeeEEecceecc-cccceeeeeccccCcccccccccc
Confidence            4589999999999999988764432    2211 122      133333222111 123357899999999987643322


Q ss_pred             cccccccCCcEEEccEEEEEeeC------CcEEEEEcCCceEeecCCCCCCCcccccceeEEEEeCCeEEEEEEecCCcC
Q 046579          226 APSVINFRGGVFWNGAIHWVSTH------GSSLYFDVDQEKLREMPMPPIPDEWEERRHQYFGESRGHLHLIEIYGPCTA  299 (416)
Q Consensus       226 ~~~~~~~~~~v~~~G~lyw~~~~------~~il~fD~~~e~~~~i~~P~~~~~~~~~~~~~l~~~~G~L~~v~~~~~~~~  299 (416)
                      .   ......+..++.+|-+...      ..+..||+.+++|.....++.+..     .......+++++++........
T Consensus       138 ~---r~~~~~~~~~~~~~~~GG~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~-----~~~~~~~~~~i~i~GG~~~~~~  209 (288)
T d1zgka1         138 R---RIGVGVAVLNRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRS-----GAGVCVLHNCIYAAGGYDGQDQ  209 (288)
T ss_dssp             C---CBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCB-----SCEEEEETTEEEEECCBCSSSB
T ss_pred             c---cccceeeeeeecceEecCcccccccceEEEeeccccccccccccccccc-----cccccceeeeEEEecCcccccc
Confidence            1   1334456677777766432      358999999999998765543221     1235567888888765443333


Q ss_pred             eEEEEEEeCCCCCceEEEEEcccccccccccchhccCCCCCCceeeeEEEEeecCCCCCCcEEEEee------CCeEEEE
Q 046579          300 LFNVYEMKTDYSGWFVKYRVDLGGVTYVFPEMIRTYLDPEDLHYYGYSILCVVREENDDDSYLVLHL------PKKAVRY  373 (416)
Q Consensus       300 ~l~iW~l~~~~~~W~~~~~i~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~------~~~l~~y  373 (416)
                      .-.+|..+.....|......         |.-.           ...... +.     ++.++++..      -..+..|
T Consensus       210 ~~~~~~~~~~~~~~~~~~~~---------p~~r-----------~~~~~~-~~-----~~~l~v~GG~~~~~~~~~v~~y  263 (288)
T d1zgka1         210 LNSVERYDVETETWTFVAPM---------KHRR-----------SALGIT-VH-----QGRIYVLGGYDGHTFLDSVECY  263 (288)
T ss_dssp             CCCEEEEETTTTEEEECCCC---------SSCC-----------BSCEEE-EE-----TTEEEEECCBCSSCBCCEEEEE
T ss_pred             ccceeeeeecceeeecccCc---------cCcc-----------cceEEE-EE-----CCEEEEEecCCCCeecceEEEE
Confidence            44667777555667643221         1110           111222 22     344444432      1468999


Q ss_pred             EcCCCcEEEeeecCCCC
Q 046579          374 NLKDRTFKKLHDVAPAG  390 (416)
Q Consensus       374 dl~~~~~~~v~~~~~~~  390 (416)
                      |+.+++|+.+..+..+|
T Consensus       264 d~~~~~W~~~~~~p~~R  280 (288)
T d1zgka1         264 DPDTDTWSEVTRMTSGR  280 (288)
T ss_dssp             ETTTTEEEEEEECSSCC
T ss_pred             ECCCCEEEECCCCCCCc
Confidence            99999999999876654

PyMOL of d1zgka1

>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.29  E-value=2.3e-05  Score=69.15  Aligned_cols=199  Identities=13%  Similarity=0.110  Sum_probs=114.4

Q ss_pred             ceEEEEccCCcceEecCCCCcCCCcceeeeeEEEEeCCCCCCCeEEEEEEecCC---CCCCceEEEEEECCCCCeeeccC
Q 046579          146 RNYYVYNPTNKQYTILPRLHVDRGIFRSIFGVNLAFDPSKSAHYKVICVRNCDS---LRDGHYQIEIYSSKTGPWRLSGG  222 (416)
Q Consensus       146 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~l~~d~~~~~~ykVv~~~~~~~---~~~~~~~~~vyss~t~~W~~~~~  222 (416)
                      ..+.++||.|++|..+|+++.++..    ++++. .+     . +++.+.....   .......+++|+..++.|+....
T Consensus        19 ~~~~~yd~~t~~W~~~~~~p~~R~~----~~~~~-~~-----~-~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~w~~~~~   87 (288)
T d1zgka1          19 SYLEAYNPSNGTWLRLADLQVPRSG----LAGCV-VG-----G-LLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAP   87 (288)
T ss_dssp             CCEEEEETTTTEEEECCCCSSCCBS----CEEEE-ET-----T-EEEEECCEEEETTEEEECCCEEEEETTTTEEEECCC
T ss_pred             ceEEEEECCCCeEEECCCCCCccce----eEEEE-EC-----C-EEEEEeCcccCCCCccccchhhhccccccccccccc
Confidence            4588999999999999988764432    22111 11     1 3444432210   01123368999999999998753


Q ss_pred             CCccccccccCCcEEEccEEEEEeeC------CcEEEEEcCCceEeecCCCCCCCcccccceeEEEEeCCeEEEEEEecC
Q 046579          223 SFTAPSVINFRGGVFWNGAIHWVSTH------GSSLYFDVDQEKLREMPMPPIPDEWEERRHQYFGESRGHLHLIEIYGP  296 (416)
Q Consensus       223 ~~~~~~~~~~~~~v~~~G~lyw~~~~------~~il~fD~~~e~~~~i~~P~~~~~~~~~~~~~l~~~~G~L~~v~~~~~  296 (416)
                      .. .  ......++..+|++|.+...      .....+|..+++|...+.++.+...     ...+...++++++.....
T Consensus        88 ~p-~--~r~~~~~~~~~~~i~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~-----~~~~~~~~~~~~~GG~~~  159 (288)
T d1zgka1          88 MS-V--PRNRIGVGVIDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIG-----VGVAVLNRLLYAVGGFDG  159 (288)
T ss_dssp             CS-S--CCBTCEEEEETTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBS-----CEEEEETTEEEEECCBCS
T ss_pred             cc-c--eecceeccccceeeEEecceecccccceeeeeccccCcccccccccccccc-----ceeeeeeecceEecCccc
Confidence            21 1  12344577889999987542      2478899999999876544332111     124566888888754433


Q ss_pred             CcCeEEEEEEeCCCCCceEEEEEcccccccccccchhccCCCCCCceeeeEEEEeecCCCCCCcEEEEe------eCCeE
Q 046579          297 CTALFNVYEMKTDYSGWFVKYRVDLGGVTYVFPEMIRTYLDPEDLHYYGYSILCVVREENDDDSYLVLH------LPKKA  370 (416)
Q Consensus       297 ~~~~l~iW~l~~~~~~W~~~~~i~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~------~~~~l  370 (416)
                      ....-.++.++.....|......         +...            .....++.     ++.++.+.      .-...
T Consensus       160 ~~~~~~~~~~d~~~~~~~~~~~~---------~~~~------------~~~~~~~~-----~~~i~i~GG~~~~~~~~~~  213 (288)
T d1zgka1         160 TNRLNSAECYYPERNEWRMITAM---------NTIR------------SGAGVCVL-----HNCIYAAGGYDGQDQLNSV  213 (288)
T ss_dssp             SCBCCCEEEEETTTTEEEECCCC---------SSCC------------BSCEEEEE-----TTEEEEECCBCSSSBCCCE
T ss_pred             ccccceEEEeecccccccccccc---------cccc------------ccccccce-----eeeEEEecCccccccccce
Confidence            22334566666544566533221         1110            11112222     23333332      12578


Q ss_pred             EEEEcCCCcEEEeeecCCC
Q 046579          371 VRYNLKDRTFKKLHDVAPA  389 (416)
Q Consensus       371 ~~ydl~~~~~~~v~~~~~~  389 (416)
                      ..||..+++|+.+......
T Consensus       214 ~~~~~~~~~~~~~~~~p~~  232 (288)
T d1zgka1         214 ERYDVETETWTFVAPMKHR  232 (288)
T ss_dssp             EEEETTTTEEEECCCCSSC
T ss_pred             eeeeecceeeecccCccCc
Confidence            9999999999998765443

PyMOL of d1zgka1

>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}	Back information, alignment and structure

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=97.65  E-value=0.00089  Score=61.15  Aligned_cols=230  Identities=11%  Similarity=0.082  Sum_probs=117.1

Q ss_pred             EeeeCceEEeeecCCCCCCceEEEEccCCcceEecCCCCcCCCcceeeeeEEEEeCCCCCCCeEEEEEEecCCCCCCceE
Q 046579          127 LQSCNGLLLCSSSRAYQPRRNYYVYNPTNKQYTILPRLHVDRGIFRSIFGVNLAFDPSKSAHYKVICVRNCDSLRDGHYQ  206 (416)
Q Consensus       127 ~~s~~GLvl~~~~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~l~~d~~~~~~ykVv~~~~~~~~~~~~~~  206 (416)
                      ....+|.+++....   +.....++||.|++|..+|.++..+..    ...++..|    +  +|+.+............
T Consensus        82 ~~~~~g~i~v~Gg~---~~~~~~~yd~~~~~w~~~~~~~~~r~~----~~~~~~~d----G--~v~v~GG~~~~~~~~~~  148 (387)
T d1k3ia3          82 SMDGNGQIVVTGGN---DAKKTSLYDSSSDSWIPGPDMQVARGY----QSSATMSD----G--RVFTIGGSWSGGVFEKN  148 (387)
T ss_dssp             EECTTSCEEEECSS---STTCEEEEEGGGTEEEECCCCSSCCSS----CEEEECTT----S--CEEEECCCCCSSSCCCC
T ss_pred             EEecCCcEEEeecC---CCcceeEecCccCcccccccccccccc----cceeeecC----C--ceeeeccccccccccce
Confidence            34457877776643   345688999999999999988864432    22222111    2  34445443322223447


Q ss_pred             EEEEECCCCCeeeccCCCccc-c-------ccccCCc-EE--EccEEEEEeeC-CcEEEEEcCCceEeecC-CCCCCCc-
Q 046579          207 IEIYSSKTGPWRLSGGSFTAP-S-------VINFRGG-VF--WNGAIHWVSTH-GSSLYFDVDQEKLREMP-MPPIPDE-  272 (416)
Q Consensus       207 ~~vyss~t~~W~~~~~~~~~~-~-------~~~~~~~-v~--~~G~lyw~~~~-~~il~fD~~~e~~~~i~-~P~~~~~-  272 (416)
                      +++|+..+++|.......... .       ....... ++  .+|.+|..... ..+..+|..+..|.... .|..... 
T Consensus       149 v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (387)
T d1k3ia3         149 GEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVA  228 (387)
T ss_dssp             EEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEEC
T ss_pred             eeeecCCCCceeecCCCcccccccccccceeeccceeEEEEeCCCCEEEecCcCCcEEecCcccCcEeeccccccCcccC
Confidence            899999999999764211111 0       0011112 22  26776655433 35678889998887652 2111100 


Q ss_pred             -cc-ccceeEEEEeCCeEEEEEEecCCc-----CeEEEEEEeCCCCCceEEEEEcccccccccccchhccCCCCCCceee
Q 046579          273 -WE-ERRHQYFGESRGHLHLIEIYGPCT-----ALFNVYEMKTDYSGWFVKYRVDLGGVTYVFPEMIRTYLDPEDLHYYG  345 (416)
Q Consensus       273 -~~-~~~~~~l~~~~G~L~~v~~~~~~~-----~~l~iW~l~~~~~~W~~~~~i~~~~l~~~~p~~~~~~~~~~~~~~~~  345 (416)
                       .. ......+...+|+++++.......     ....+..+......|.....+.  .+    |.-.           ..
T Consensus       229 ~~~~~~~~~~~~~~~g~v~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~----p~~r-----------~~  291 (387)
T d1k3ia3         229 PDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASN--GL----YFAR-----------TF  291 (387)
T ss_dssp             CCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTT--CC----SSCC-----------BS
T ss_pred             cccccccEEEeeccCCceEEEEeccCCCCCcccceeecccccccccCCCceeecc--cc----cccc-----------cc
Confidence             00 001112333578888776542211     2334444443333333222221  10    1100           11


Q ss_pred             eEEEEeecCCCCCCcEEEEeeC------------CeEEEEEcCCCcEEEeeecCCCCC
Q 046579          346 YSILCVVREENDDDSYLVLHLP------------KKAVRYNLKDRTFKKLHDVAPAGN  391 (416)
Q Consensus       346 ~~~~~~~~~~~~~~~~i~l~~~------------~~l~~ydl~~~~~~~v~~~~~~~~  391 (416)
                      ...+.+ .    ++.++++...            ..+..||+++++|+.+..+..+|.
T Consensus       292 ~~~~~~-~----dg~i~v~GG~~~~~~~~~~~~~~~ve~Ydp~~~~W~~~~~~~~~R~  344 (387)
T d1k3ia3         292 HTSVVL-P----DGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPNSIVRV  344 (387)
T ss_dssp             CEEEEC-T----TSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCCCSSCCC
T ss_pred             ceeeec-c----CCeEEEECCcccCccCCCCcEeceEEEEECCCCeEEECCCCCCccc
Confidence            122222 1    3455544321            246789999999999987766553

PyMOL of d1k3ia3

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}	Back information, alignment and structure