Citrus Sinensis ID: 046583

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400
Protein Sequence
MEDINDRNIVIIETTTDHPLSPEVFNRMFVFLYDTAYAFKTRCRKLITIDGWEIDGPYKSVMLVAVCRDGNDAVLPIAFCEVQEENLDSWAFFLTNLTYGLRFERGEGLCILADGDNGVDEAVEEFLPYAVYRQCCFSLYGRMVGKFPDVGVHSAFWGACRSTDRKNFIYHMSIIETVNIECHNWLKDTDTKTWALFSMPQWVKSTEVTKSSSEQLRIWLSKFLDLNVAQRYTTITRTIAEMFQRRYLAGWEWVYDKITPTARQQIIHNVFQSDGWNVDVPSNNAVSFVSRHGFVFEVNRELMTCSCRLWQLSGIPCEHACRCIHSWADKLDKYVHRLWSVDEYRSAYGPGMQMLREITHWEWQTKANVLPPMKNSTNSSGSNEANCHSKVTTLNDLFPY
Secondary Structure (PSIPRED)
ccccccccEEEEEEccccccccccEEEEEEEHHHHHHHHHHccccEEEcccEEEccccccEEEEEEEEcccccEEEEEEEEcccccccHHHHHHHHHcccccccccccEEEEccccccccccHHccccccEEEEEcccccccccccccccccccccccccccccHHcHHHHHHHHHHHcHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHcccccEEEccccccEEEEEEccEEEEEEEEEEEEEEEcccccccccHHHHHHHHHHccccHHHccccccHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccEEEEEEccccccccHHHHHHEEEHHHHHHHHHHccccEEEEEcEEEccccccEEEEEEEEcccccEEEEEEEEEEccccHHHHHHHHHHHHHHcccccccEEEEEcccHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHccHHHHHHHHHHHHHHcHHHHHHHHHccHHHHHHHHccccccccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHcccEEEEEcccEEEEEEcccEEEEEEEcccEEcccccccccccHHHHHHHHHHccccHHHHHHHHccHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
medindrnIVIIEtttdhplspevFNRMFVFLYDTAYAFKTRCRKLITidgweidgpyKSVMLVAVCrdgndavlpiAFCEVQEENLDSWAFFLTNLTYGlrfergeglciladgdngvDEAVEEFLPYAVYRQCCFSLygrmvgkfpdvgvhsafwgacrstdrkNFIYHMSIIETVNIEchnwlkdtdtktwalfsmpqwvkstevtksSSEQLRIWLSKFLDLNVAQRYTTITRTIAEMFQRRYLAGWEWVYDKITPTARQQIIHNVfqsdgwnvdvpsnnavsfvsrhgfVFEVNRELMTCSCrlwqlsgipcehacrCIHSWADKLDKYVHRLWSvdeyrsaygpgMQMLREITHWEwqtkanvlppmknstnssgsneanchskvttlndlfpy
Flexible Loop (DISEMBL)
medindrniviietttdhplspeVFNRMFVFLYDTAYAFKTRCRKLITidgweidgpYKSVMLVAVCRDGNDAVLPIAFCEVQEENLDSWAFFLTNLTYGLRFERGEGLCILADGDNGVDEAVEEFLPYAVYRQCCFSLYGRMVGKFPDVGVHSAFWGACRSTDRKNFIYHMSIIETVNIECHNWLKDTDTKTWALFSMPQWVKSTEVTKSSSEQLRIWLSkfldlnvaQRYTTITRTIAEMFQRRYLAGWEWVYDKITPTARQQIIHNVFQSDGWNVDVPSNNAVSFVSRHGFVFEVNRELMTCSCRLWQLSGIPCEHACRCIHSWADKLDKYVHRLWSVDEYRSAYGPGMQMLREITHWEWQTKANVLPPMKNSTnssgsneanchskvttlndlfpy
Low Complexity Region (SEG)
MEDINDRNIVIIETTTDHPLSPEVFNRMFVFLYDTAYAFKTRCRKLITIDGWEIDGPYKSVMLVAVCRDGNDAVLPIAFCEVQEENLDSWAFFLTNLTYGLRFERGEGLCILADGDNGVDEAVEEFLPYAVYRQCCFSLYGRMVGKFPDVGVHSAFWGACRSTDRKNFIYHMSIIETVNIECHNWLKDTDTKTWALFSMPQWVKSTEVTKSSSEQLRIWLSKFLDLNVAQRYTTITRTIAEMFQRRYLAGWEWVYDKITPTARQQIIHNVFQSDGWNVDVPSNNAVSFVSRHGFVFEVNRELMTCSCRLWQLSGIPCEHACRCIHSWADKLDKYVHRLWSVDEYRSAYGPGMQMLREITHWEWQTKANVLPPMKNSTNSSGSNEANCHSKVTTLNDLFPY
Disordered region (IsUnstruct)
*******NIVIIETTTDHPLSPEVFNRMFVFLYDTAYAFKTRCRKLITIDGWEIDGPYKSVMLVAVCRDGNDAVLPIAFCEVQEENLDSWAFFLTNLTYGLRFERGEGLCILADGDNGVDEAVEEFLPYAVYRQCCFSLYGRMVGKFPDVGVHSAFWGACRSTDRKNFIYHMSIIETVNIECHNWLKDTDTKTWALFSMPQWVKSTEVTKSSSEQLRIWLSKFLDLNVAQRYTTITRTIAEMFQRRYLAGWEWVYDKITPTARQQIIHNVFQSDGWNVDVPSNNAVSFVSRHGFVFEVNRELMTCSCRLWQLSGIPCEHACRCIHSWADKLDKYVHRLWSVDEYRSAYGPGMQMLREITHWEWQTKANV*******************************
Disordered Region (DISOPRED)
***INDRNIVIIETTTDHPLSPEVFNRMFVFLYDTAYAFKTRCRKLITIDGWEIDGPYKSVMLVAVCRDGNDAVLPIAFCEVQEENLDSWAFFLTNLTYGLRFERGEGLCILADGDNGVDEAVEEFLPYAVYRQCCFSLYGRMVGKFPDVGVHSAFWGACRSTDRKNFIYHMSIIETVNIECHNWLKDTDTKTWALFSMPQWVKSTEVTKSSSEQLRIWLSKFLDLNVAQRYTTITRTIAEMFQRRYLAGWEWVYDKITPTARQQIIHNVFQSDGWNVDVPSNNAVSFVSRHGFVFEVNRELMTCSCRLWQLSGIPCEHACRCIHSWADKLDKYVHRLWSVDEYRSAYGPGMQMLREITHWEWQTKANV*******************************
Disordered Region (DISEMBL)
MEDINDRNIVIIETTTDHPLSPEVFNRMFVFLYDTAYAFKTRCRKLITIDGWEIDGPYKSVMLVAVCRDGNDAVLPIAFCEVQEENLDSWAFFLTNLTYGLRFERGEGLCILADGDNGVDEAVEEFLPYAVYRQCCFSLYGRMVGKFPDVGVHSAFWGACRSTDRKNFIYHMSIIETVNIECHNWLKDTDTKTWALFSMPQWV**********EQLRIWLSKFLDLNVAQRYTTITRTIAEMFQRRYLAGWEWVYDKITPTARQQIIHNVFQSDGWNVDVPSNNAVSFVSRHGFVFEVNRELMTCSCRLWQLSGIPCEHACRCIHSWADKLDKYVHRLWSVDEYRSAYGPGMQMLREITHWEWQTKANVLPPMKN***********CHSKVTTLNDLFPY
Disordered Region (DISPRO)
***INDRNIVIIETTTDHPLSPEVFNRMFVFLYDTAYAFKTRCRKLITIDGWEIDGPYKSVMLVAVCRDGNDAVLPIAFCEVQEENLDSWAFFLTNLTYGLRFERGEGLCILADGDNGVDEAVEEFLPYAVYRQCCFSLYGRMVGKFPDVGVHSAFWGACRSTDRKNFIYHMSIIETVNIECHNWLKDTDTKTWALFSMPQWVKSTEVTKSSSEQLRIWLSKFLDLNVAQRYTTITRTIAEMFQRRYLAGWEWVYDKITPTARQQIIHNVFQSDGWNVDVPSNNAVSFVSRHGFVFEVNRELMTCSCRLWQLSGIPCEHACRCIHSWADKLDKYVHRLWSVDEYRSAYGPGMQMLREITHWEWQTKANVLPPMK**************************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEDINDRNIVIIETTTDHPLSPEVFNRMFVFLYDTAYAFKTRCRKLITIDGWEIDGPYKSVMLVAVCRDGNDAVLPIAFCEVQEENLDSWAFFLTNLTYGLRFERGEGLCILADGDNGVDEAVEEFLPYAVYRQCCFSLYGRMVGKFPDVGVHSAFWGACRSTDRKNFIYHMSIIETVNIECHNWLKDTDTKTWALFSMPQWVKSTEVTKSSSEQLRIWLSKFLDLNVAQRYTTITRTIAEMFQRRYLAGWEWVYDKITPTARQQIIHNVFQSDGWNVDVPSNNAVSFVSRHGFVFEVNRELMTCSCRLWQLSGIPCEHACRCIHSWADKLDKYVHRLWSVDEYRSAYGPGMQMLREITHWEWQTKANVLPPMKNSTNSSGSNEANCHSKVTTLNDLFPY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	400
147821706	632	hypothetical protein VITISV_007696 [Viti	0.752	0.476	0.296	1e-29
242082275	846	hypothetical protein SORBIDRAFT_07g02782	0.865	0.408	0.264	3e-29
242079489	861	hypothetical protein SORBIDRAFT_07g02309	0.875	0.406	0.246	1e-28
222612932	948	hypothetical protein OsJ_31731 [Oryza sa	0.887	0.374	0.267	2e-28
242039061	995	hypothetical protein SORBIDRAFT_01g01680	0.875	0.351	0.246	2e-28
53370698	1030	transposon protein, putative, mutator su	0.867	0.336	0.241	3e-28
297601393	1015	Os03g0648200 [Oryza sativa Japonica Grou	0.867	0.341	0.241	3e-28
90265237	1030	H0322F07.9 [Oryza sativa Indica Group] g	0.87	0.337	0.239	4e-28
50511365	1006	putative polyprotein [Oryza sativa Japon	0.867	0.344	0.241	7e-28
77556042	895	transposon protein, putative, Mutator su	0.89	0.397	0.260	7e-28

>gi|147821706|emb|CAN65999.1| hypothetical protein VITISV_007696 [Vitis vinifera]

 Score =  137 bits (344), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 99/334 (29%), Positives = 153/334 (45%), Gaps = 33/334 (9%)

Query: 10  VIIETTTDHPLSPEVFNRMFVFLYDTAYAFKTRCRKLITIDGWEIDGPYKSVMLVAVCRD 69
           V I+TT D      VF RM++ L      F   CR LI IDG  + G     +LVAV  D
Sbjct: 290 VKIQTTND------VFERMYICLDACKRGFLAGCRPLIGIDGCHLKGTTGGQLLVAVGND 343

Query: 70  GNDAVLPIAFCEVQEENLDSWAFFLTNL--TYGLRFERGEGLCILADGDNGVDEAVEEFL 127
           GND + PIAF  V+ EN  SW +FL  L    G   E G GL           E  ++ +
Sbjct: 344 GNDNIFPIAFAIVEIENKSSWTWFLQCLLDDIGHVDENGWGLV----------ETFKDLM 393

Query: 128 PYAVYRQCCFSLYGRMVGKFPDVGVHSAFWGACRSTDRKNFIYHMSIIETVNIECHNWLK 187
           P A +R C   L+      FP   +  A W A R+T + +F +HM  ++ ++++ + WL 
Sbjct: 394 PNAEHRFCVRHLHXNFKKDFPXKVLKDAMWSAARATTKNSFDFHMDELKKLDVKAYEWLV 453

Query: 188 DTDTKTWALFSMPQWVKSTEVTKSSSEQLRIWLSKFLDLNVAQRYTTITRTIAEMFQ--R 245
             D +TW+  +     KS  +  + +E    W+ +  D  V      I   + +  Q  R
Sbjct: 454 KLDVRTWSRHAFNPRSKSDTLVNNIAESFNAWILEAXDKPVLTMMEIIRVMLMQRLQTKR 513

Query: 246 RYLAGWEW-----VYDKITPTARQQIIHNVFQSDGWNVDVPSNNAVSFVSRHGFVFEVNR 300
            ++  +E      +Y K+    + ++ H + +   WN +  S   V ++    +V ++N 
Sbjct: 514 DHMRRYEGRVCPRIYKKLE-RIKXEVGHCISR---WNGE--SKYEVEYIYGGRYVVDLNE 567

Query: 301 ELMTCSCRLWQLSGIPCEHACRCIHSWADKLDKY 334
              TC C  W LSGIPC HA   I    ++L+ Y
Sbjct: 568 R--TCGCGRWGLSGIPCFHAAAAIIEHGEQLETY 599

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242082275|ref|XP_002445906.1| hypothetical protein SORBIDRAFT_07g027820 [Sorghum bicolor] gi|241942256|gb|EES15401.1| hypothetical protein SORBIDRAFT_07g027820 [Sorghum bicolor]

 Score =  135 bits (340), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 93/351 (26%), Positives = 154/351 (43%), Gaps = 5/351 (1%)

Query: 24  VFNRMFVFLYDTAYAFKTRCRKLITIDGWEIDGPYKSVMLVAVCRDGNDAVLPIAFCEVQ 83
           VF+R+++ L      F   CR++I +DG  + GP K  +L A+ RD N+ + PIA+  V+
Sbjct: 438 VFHRLYICLDACRRGFLDGCRRVIGLDGCFLKGPMKGELLSAIGRDANNQIYPIAWAVVE 497

Query: 84  EENLDSWAFFLTNLTYGLRFERGE-GLCILADGDNGVDEAVEEFLPYAVYRQCCFSLYGR 142
            ENL SW +FL +    L+   G  G   L D   G+ +A++ F P A +R C   +Y  
Sbjct: 498 YENLSSWKWFLGHRQKDLKIPYGAAGWVFLTDKQKGLLKAIDHFFPMAEHRMCARHIYAN 557

Query: 143 MVGKFPDVGVHSAFWGACRSTDRKNFIYHMSIIETVNIECHNWLKDTDTKTWALFSMPQW 202
              K         FW   ++++   F Y+ + +     +  + L+ TD          + 
Sbjct: 558 WRKKHRLQEYQKRFWKIAKASNEMLFNYYKNKLAAKTPKGWDDLQKTDPVHGCRAFFKEG 617

Query: 203 VKSTEVTKSSSEQLRIWLSKFLDLNVAQRYTTITRTIAEMFQRRYLAGWEWVYDKITPTA 262
                V  + SE    W+       +      I   +    Q+       W    I P  
Sbjct: 618 SNCESVDNNVSESFNSWIIDARFKPIITMLEDICIMVTRRIQKNRSNSERWTMG-ICPNI 676

Query: 263 RQQIIHNVFQSDGWNVDVPSNNAVSF-VSRHGFVFEVNRELMTCSCRLWQLSGIPCEHAC 321
            +++  N  +       V  N A  F V    + F V+ E  TCSC  WQ+SG+PC HAC
Sbjct: 677 LRKV--NKIRHATQYCHVLWNGASGFEVRDKKWRFTVDLEQKTCSCGYWQVSGLPCRHAC 734

Query: 322 RCIHSWADKLDKYVHRLWSVDEYRSAYGPGMQMLREITHWEWQTKANVLPP 372
             + + +D+ + YV+  +S+D+Y++ Y   +Q +   + W        LPP
Sbjct: 735 AALFTMSDEPNNYVNGCFSIDQYKATYQHVLQPVEHESAWSVSPNPRPLPP 785

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242079489|ref|XP_002444513.1| hypothetical protein SORBIDRAFT_07g023090 [Sorghum bicolor] gi|241940863|gb|EES14008.1| hypothetical protein SORBIDRAFT_07g023090 [Sorghum bicolor]

 Score =  133 bits (335), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 88/357 (24%), Positives = 155/357 (43%), Gaps = 7/357 (1%)

Query: 20  LSPEVFNRMFVFLYDTAYAFKTRCRKLITIDGWEIDGPYKSVMLVAVCRDGNDAVLPIAF 79
           L   +F+  ++ L      F   CR +I +D   +   +   +L AV  D ND + PIAF
Sbjct: 329 LQGSLFSSCYMSLDACKRGFLAGCRPIICLDECHVKTKFGGQLLTAVGMDPNDCIYPIAF 388

Query: 80  CEVQEENLDSWAFFLTNLTYGLRFERGEGLCILADGDNGVDEAVEEFLPYAVYRQCCFSL 139
             V+ E+  +W +FL  L   L+ +      I+ D   G+  AV++  P + +R C   L
Sbjct: 389 AVVEVESFVTWKWFLETLKTDLQIDNTFPWTIMTDKQKGLIPAVKQVFPESEHRFCVRHL 448

Query: 140 YGRMVGKFPDVGVHSAFWGACRSTDRKNFIYHMSIIETVNIECHNWLKDTDTKTWALFSM 199
           Y     K+    +    W   RS+  + +  +M  ++ +N + + WL+     TW     
Sbjct: 449 YANFNEKYKGEILKKQLWACARSSSVQQWTRNMEKMKALNEDAYKWLEKMPPNTWVRAYF 508

Query: 200 PQWVKSTEVTKSSSEQLRIWLSKFLDLNVAQRYTTITRTIAEMFQRRYLAGWEWVYD--- 256
            ++ K   +  ++ E    ++ +  +L +    + + R   ++  R Y    E   D   
Sbjct: 509 SEFPKCDILLNNNCEVFNSYILEARELPI---LSMLERIKCQLMTRHYNKQQELGKDIQG 565

Query: 257 KITPTARQQIIHNVFQSDGWNVDVPSNNAVSFVSRHGFVFEVNRELMTCSCRLWQLSGIP 316
              P  R+++  N  +        PS   V  V    +   V+    TC CR WQL+G+P
Sbjct: 566 AFCPKIRKKVAKNA-EFANMCFAAPSGQGVFQVQIKDYQHIVDINARTCDCRRWQLTGVP 624

Query: 317 CEHACRCIHSWADKLDKYVHRLWSVDEYRSAYGPGMQMLREITHWEWQTKANVLPPM 373
           C HA  C+ S     +  +   +SV+ Y++AYG  +   ++ T WE      VLPP+
Sbjct: 625 CCHAISCLRSERIPPESVLANCYSVEAYKNAYGFNIWPCKDKTEWEKMNGPEVLPPV 681

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|222612932|gb|EEE51064.1| hypothetical protein OsJ_31731 [Oryza sativa Japonica Group]

 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 98/367 (26%), Positives = 155/367 (42%), Gaps = 12/367 (3%)

Query: 9   IVIIETTTDHPLSPEVFNRMFVFLYDTAYAFKTRCRKLITIDGWEIDGPYKSVMLVAVCR 68
           +V  E  TD    P VF R+++ L      F   CRK++ +DG    G     +L A+ R
Sbjct: 457 VVNREIGTD----PPVFKRIYICLDACKRGFVDGCRKVVGLDGCFFKGATNGELLCAIGR 512

Query: 69  DGNDAVLPIAFCEVQEENLDSWAFFLTNLTYGLRFERGEGLCILADGDNGVDEAVEEFLP 128
           D N+ + PIA+  V +EN + W +FL  L   L+   G G   ++D   G+  AVE++ P
Sbjct: 513 DANNQMYPIAWAVVHKENNEEWDWFLDLLCSDLKVLDGTGWVFISDQQKGIINAVEKWAP 572

Query: 129 YAVYRQCCFSLYGRMVGKFPDVGVHSAFWGACRSTDRKNFIYHMSIIETVNIECHNWLKD 188
            A +R C   +Y      F D      FW   ++  R  F    + +  V       + +
Sbjct: 573 QAEHRNCARHIYANWKRHFSDKEFQKKFWRCAKAPCRMLFNLARAKLAQVTPAGAQAILN 632

Query: 189 TDTKTWALFSMPQWVKSTEVTKSSSEQLRIWLSKFLDLNVAQRYTTITRTIAEMF--QRR 246
           T  + W+            V  +  E    W+ +     +     TI R +      QR+
Sbjct: 633 THPEHWSRAWFKLGSNCDSVDNNMCESFNKWILEARFFPIITMLETIRRKVMVRISEQRK 692

Query: 247 YLAGWEWVYDKITPTARQQIIHNVFQSDGWNVDVPSNNAVSF-VSRHGFVFEVNRELMTC 305
             A W  V   + P   +++  NV+ ++        N A SF V  H   F V  +   C
Sbjct: 693 VSARWNTV---VCPGILKKL--NVYITESAYCHAICNGADSFEVKHHTNRFTVQLDKKEC 747

Query: 306 SCRLWQLSGIPCEHACRCIHSWADKLDKYVHRLWSVDEYRSAYGPGMQMLREITHWEWQT 365
           SCR WQLSG+PC HA  CI    + LD++    + VD ++S Y   +  +  +  W    
Sbjct: 748 SCRYWQLSGLPCPHAIACIFYRTNTLDEFTADCYKVDAFKSTYKHCLLPVEGMNAWPEDD 807

Query: 366 KANVLPP 372
           +  +  P
Sbjct: 808 REPLTAP 814

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242039061|ref|XP_002466925.1| hypothetical protein SORBIDRAFT_01g016800 [Sorghum bicolor] gi|241920779|gb|EER93923.1| hypothetical protein SORBIDRAFT_01g016800 [Sorghum bicolor]

 Score =  132 bits (333), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 88/357 (24%), Positives = 155/357 (43%), Gaps = 7/357 (1%)

Query: 20  LSPEVFNRMFVFLYDTAYAFKTRCRKLITIDGWEIDGPYKSVMLVAVCRDGNDAVLPIAF 79
           L   +F+  ++ L      F   CR LI +DG  I   +   +L AV  D ND + PIAF
Sbjct: 440 LEGNLFSSCYMSLDACKRGFLAGCRPLICLDGCHIKTKFGGQLLTAVGMDPNDCIYPIAF 499

Query: 80  CEVQEENLDSWAFFLTNLTYGLRFERGEGLCILADGDNGVDEAVEEFLPYAVYRQCCFSL 139
             V+ E+  +W +FL +L   L+ +      I+ D   G+   V++  P + +R C   L
Sbjct: 500 AVVEVESFVTWKWFLESLKADLQIDNTFPWTIMTDKQKGLIPTVKQVFPESEHRFCVRHL 559

Query: 140 YGRMVGKFPDVGVHSAFWGACRSTDRKNFIYHMSIIETVNIECHNWLKDTDTKTWALFSM 199
           Y     KF    +    W   RS+  + +  +M  ++ +N++ + W++     TW     
Sbjct: 560 YANFNEKFKGEILKKQLWACARSSSVQQWTRNMEKMKDLNVDAYQWIEKMPPNTWLRAYF 619

Query: 200 PQWVKSTEVTKSSSEQLRIWLSKFLDLNVAQRYTTITRTIAEMFQRRYLAGWE---WVYD 256
            ++ K   +  ++ E    ++ +  DL +    + + R    +  R Y    E    +  
Sbjct: 620 SEFPKCDILLNNNCEVFNSYILEARDLPI---LSMLERIKCPLMTRHYSKQQEIGKHIQG 676

Query: 257 KITPTARQQIIHNVFQSDGWNVDVPSNNAVSFVSRHGFVFEVNRELMTCSCRLWQLSGIP 316
              P  R+++  N  +        PS   V  V    +   V+    TC CR WQL+G+P
Sbjct: 677 AFCPKIRKKVAKNA-EFANMCFASPSGQGVFQVQIKDYQHIVDINARTCDCRRWQLTGVP 735

Query: 317 CEHACRCIHSWADKLDKYVHRLWSVDEYRSAYGPGMQMLREITHWEWQTKANVLPPM 373
           C HA  C+ S     +  +   +SV+ +++AYG  +   ++ T W       VLPP+
Sbjct: 736 CCHAISCLRSERIPPESVLANCYSVEAFKNAYGFNIWPCKDKTEWAKVNGPEVLPPI 792

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|53370698|gb|AAU89193.1| transposon protein, putative, mutator sub-class [Oryza sativa Japonica Group]

 Score =  132 bits (332), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 87/360 (24%), Positives = 156/360 (43%), Gaps = 13/360 (3%)

Query: 20  LSPEVFNRMFVFLYDTAYAFKTRCRKLITIDGWEIDGPYKSVMLVAVCRDGNDAVLPIAF 79
           L   +F++ ++ +      F   CR LI +DG  I   Y   +L AV  D ND + PIAF
Sbjct: 485 LDGSLFSQCYMSMDACKRGFLNGCRPLICLDGCHIKTKYGGQLLTAVGMDPNDCIYPIAF 544

Query: 80  CEVQEENLDSWAFFLTNLTYGLRFERGEGLCILADGDNGVDEAVEEFLPYAVYRQCCFSL 139
             V+ E+L +W +FL  L   L  E      I+ D   G+  AV++  P + +R C   L
Sbjct: 545 AVVEVESLATWKWFLETLKNDLGIENTYPWTIMTDKQKGLIPAVQQVFPESEHRFCVRHL 604

Query: 140 YGRMVGKFPDVGVHSAFWGACRSTDRKNFIYHMSIIETVNIECHNWLKDTDTKTWALFSM 199
           Y     +F    + +  W   RS+  + +  +M ++  +N   + WL+     TW     
Sbjct: 605 YSNFQLQFKGEVLKNQLWACARSSSVQEWNKNMDVMRNLNKSAYEWLEKLPPNTWVRAFF 664

Query: 200 PQWVKSTEVTKSSSEQLRIWLSKFLDLNVAQRYTTITRTIAEMFQRRYLAGWEWVYDK-- 257
            ++ K   +  ++ E    ++ +  +L +     T+   I      R+    + + D+  
Sbjct: 665 SEFPKCDILLNNNCEVFNKYILEARELPI----LTMLEKIKGQLMTRHFNKQKELADQFQ 720

Query: 258 --ITPTARQQIIHNVFQSDGWNV--DVPSNNAVSFVSRHGFVFEVNRELMTCSCRLWQLS 313
             I P  R++++ N   +D  N    +P+   +  V    + + V+   M C CR W L+
Sbjct: 721 GLICPKIRKKVLKN---ADAANTCYALPAGQGIFQVHEREYQYIVDINAMYCDCRRWDLT 777

Query: 314 GIPCEHACRCIHSWADKLDKYVHRLWSVDEYRSAYGPGMQMLREITHWEWQTKANVLPPM 373
           GIPC HA  C+       +  +   ++ D +  AYG  +    + + WE      + PP+
Sbjct: 778 GIPCNHAISCLRHERINAESILPNCYTTDAFSKAYGFNIWPCNDKSKWENVNGPEIKPPV 837

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297601393|ref|NP_001050777.2| Os03g0648200 [Oryza sativa Japonica Group] gi|255674744|dbj|BAF12691.2| Os03g0648200 [Oryza sativa Japonica Group]

 Score =  132 bits (332), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 87/360 (24%), Positives = 156/360 (43%), Gaps = 13/360 (3%)

Query: 20  LSPEVFNRMFVFLYDTAYAFKTRCRKLITIDGWEIDGPYKSVMLVAVCRDGNDAVLPIAF 79
           L   +F++ ++ +      F   CR LI +DG  I   Y   +L AV  D ND + PIAF
Sbjct: 470 LDGSLFSQCYMSMDACKRGFLNGCRPLICLDGCHIKTKYGGQLLTAVGMDPNDCIYPIAF 529

Query: 80  CEVQEENLDSWAFFLTNLTYGLRFERGEGLCILADGDNGVDEAVEEFLPYAVYRQCCFSL 139
             V+ E+L +W +FL  L   L  E      I+ D   G+  AV++  P + +R C   L
Sbjct: 530 AVVEVESLATWKWFLETLKNDLGIENTYPWTIMTDKQKGLIPAVQQVFPESEHRFCVRHL 589

Query: 140 YGRMVGKFPDVGVHSAFWGACRSTDRKNFIYHMSIIETVNIECHNWLKDTDTKTWALFSM 199
           Y     +F    + +  W   RS+  + +  +M ++  +N   + WL+     TW     
Sbjct: 590 YSNFQLQFKGEVLKNQLWACARSSSVQEWNKNMDVMRNLNKSAYEWLEKLPPNTWVRAFF 649

Query: 200 PQWVKSTEVTKSSSEQLRIWLSKFLDLNVAQRYTTITRTIAEMFQRRYLAGWEWVYDK-- 257
            ++ K   +  ++ E    ++ +  +L +     T+   I      R+    + + D+  
Sbjct: 650 SEFPKCDILLNNNCEVFNKYILEARELPI----LTMLEKIKGQLMTRHFNKQKELADQFQ 705

Query: 258 --ITPTARQQIIHNVFQSDGWNV--DVPSNNAVSFVSRHGFVFEVNRELMTCSCRLWQLS 313
             I P  R++++ N   +D  N    +P+   +  V    + + V+   M C CR W L+
Sbjct: 706 GLICPKIRKKVLKN---ADAANTCYALPAGQGIFQVHEREYQYIVDINAMYCDCRRWDLT 762

Query: 314 GIPCEHACRCIHSWADKLDKYVHRLWSVDEYRSAYGPGMQMLREITHWEWQTKANVLPPM 373
           GIPC HA  C+       +  +   ++ D +  AYG  +    + + WE      + PP+
Sbjct: 763 GIPCNHAISCLRHERINAESILPNCYTTDAFSKAYGFNIWPCNDKSKWENVNGPEIKPPV 822

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|90265237|emb|CAH67772.1| H0322F07.9 [Oryza sativa Indica Group] gi|90399190|emb|CAH68177.1| H0403D02.5 [Oryza sativa Indica Group]

 Score =  132 bits (331), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 86/359 (23%), Positives = 156/359 (43%), Gaps = 11/359 (3%)

Query: 20  LSPEVFNRMFVFLYDTAYAFKTRCRKLITIDGWEIDGPYKSVMLVAVCRDGNDAVLPIAF 79
           L   +F++ ++ +      F   CR LI +DG  I   Y   +L AV  D ND + PIAF
Sbjct: 485 LDGSLFSQCYMSMDACKRGFLNGCRPLICLDGCHIKTKYGGQLLTAVGMDPNDCIYPIAF 544

Query: 80  CEVQEENLDSWAFFLTNLTYGLRFERGEGLCILADGDNGVDEAVEEFLPYAVYRQCCFSL 139
             V+ E+L +W +FL  L   L  E      I+ D   G+  AV++  P + +R C   L
Sbjct: 545 AVVEVESLATWKWFLETLKNDLGIENTYPWTIMTDKQKGLIPAVQQVFPESEHRFCVRHL 604

Query: 140 YGRMVGKFPDVGVHSAFWGACRSTDRKNFIYHMSIIETVNIECHNWLKDTDTKTWALFSM 199
           Y     +F    + +  W   RS+  + +  +M ++  +N   + W++     TW     
Sbjct: 605 YSNFQLQFKGEVLKNQLWACARSSSVQEWNKNMDVMRNLNKSAYEWIEKLPPNTWVRAFF 664

Query: 200 PQWVKSTEVTKSSSEQLRIWLSKFLDLNVAQRYTTITRTIAEMFQRRYLAGWEWV---YD 256
            ++ K   +  ++ E    ++ +  +L +    T + +   ++  R +    E V     
Sbjct: 665 SEFPKCDILLNNNCEVFNKYILEARELPI---LTMLEKIKGQLMTRHFNKQKELVDQFQG 721

Query: 257 KITPTARQQIIHNVFQSDGWNV--DVPSNNAVSFVSRHGFVFEVNRELMTCSCRLWQLSG 314
            I P  R++++ N   +D  N    +P+   +  V    + + V+   M C CR W L+G
Sbjct: 722 LICPKIRKKVLKN---ADAANTCYALPAGQGIFQVHEREYQYIVDINAMHCDCRRWDLTG 778

Query: 315 IPCEHACRCIHSWADKLDKYVHRLWSVDEYRSAYGPGMQMLREITHWEWQTKANVLPPM 373
           IPC HA  C+       +  +   ++ D +  AYG  +    + + WE      + PP+
Sbjct: 779 IPCNHAISCLRHERINAESILPNCYTTDAFSKAYGFNIWPCNDKSKWENVNGPEIKPPV 837

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|50511365|gb|AAT77288.1| putative polyprotein [Oryza sativa Japonica Group]

 Score =  131 bits (329), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 87/360 (24%), Positives = 155/360 (43%), Gaps = 13/360 (3%)

Query: 20  LSPEVFNRMFVFLYDTAYAFKTRCRKLITIDGWEIDGPYKSVMLVAVCRDGNDAVLPIAF 79
           L   +F++ ++ +      F   CR LI +DG  I   Y   +L AV  D ND + PIAF
Sbjct: 461 LDGSLFSQCYMSMDACKRGFLNGCRPLICLDGCHIKTKYGGQLLTAVGMDPNDCIYPIAF 520

Query: 80  CEVQEENLDSWAFFLTNLTYGLRFERGEGLCILADGDNGVDEAVEEFLPYAVYRQCCFSL 139
             V+ E+L +W +FL  L   L  E      I+ D   G+  AV++  P + +R C   L
Sbjct: 521 AVVEVESLATWKWFLETLKNDLGIENTYPWTIMTDKQKGLIPAVQQVFPESEHRFCVRHL 580

Query: 140 YGRMVGKFPDVGVHSAFWGACRSTDRKNFIYHMSIIETVNIECHNWLKDTDTKTWALFSM 199
           Y     +F      +  W   RS+  + +  +M ++  +N   + WL+     TW     
Sbjct: 581 YSNFQLQFKGEVPKNQLWACARSSSVQEWNKNMDVMRNLNKSAYEWLEKLPPNTWVRAFF 640

Query: 200 PQWVKSTEVTKSSSEQLRIWLSKFLDLNVAQRYTTITRTIAEMFQRRYLAGWEWVYDK-- 257
            ++ K   +  ++ E    ++ +  +L +     T+   I      R+    + + D+  
Sbjct: 641 SEFPKCDILLNNNCEVFNKYILEARELPI----LTMLEKIKGQLMTRHFNKQKELADQFQ 696

Query: 258 --ITPTARQQIIHNVFQSDGWNV--DVPSNNAVSFVSRHGFVFEVNRELMTCSCRLWQLS 313
             I P  R++++ N   +D  N    +P+   +  V    + + V+   M C CR W L+
Sbjct: 697 GLICPKIRKKVLKN---ADAANTCYALPAGQGIFQVHEREYQYIVDINAMHCDCRRWDLT 753

Query: 314 GIPCEHACRCIHSWADKLDKYVHRLWSVDEYRSAYGPGMQMLREITHWEWQTKANVLPPM 373
           GIPC HA  C+       +  +   ++ D +  AYG  +    + + WE      + PP+
Sbjct: 754 GIPCNHAISCLRHERINAESILPNCYTTDAFSKAYGFNIWPCNDKSKWENINGPEIKPPV 813

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|77556042|gb|ABA98838.1| transposon protein, putative, Mutator sub-class [Oryza sativa Japonica Group] gi|108708684|gb|ABF96479.1| transposon protein, putative, Mutator sub-class [Oryza sativa Japonica Group]

 Score =  131 bits (329), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 102/391 (26%), Positives = 163/391 (41%), Gaps = 35/391 (8%)

Query: 25  FNRMFVFLYDTAYAFKTRCRKLITIDGWEIDGPYKSVMLVAVCRDGNDAVLPIAFCEVQE 84
           F R+F+ L      F   CR  I +D   + G ++  +  AV  DGN+ + P+AF  ++ 
Sbjct: 466 FRRLFIALKPCIDGFLQGCRPYIAMDSTHLTGKHRGQLAAAVAIDGNNWLFPVAFGVIEA 525

Query: 85  ENLDSWAFFLTNLTYGLRFERGEGLCILADGDNGVDEAVEEFLPYAVYRQCCFSLYGRMV 144
           E  +SW +F+ NL   +      GL I  D   G++ AV +  P A +R+C   L+    
Sbjct: 526 ETTESWTWFVQNLKNAI--GNPPGLAISTDAGKGLERAVSDVYPTAEHRECMRHLWKNFK 583

Query: 145 GKFPDVGVHSAFWGACRSTDRKNFIYHMSIIETVNIECHNWLKDTDTKTWALFSMPQWVK 204
            ++         W A +    + + YHM+ I   + E   +LK      W+     +  K
Sbjct: 584 KQYHGPLFGENMWPAAKCYTSQQYNYHMNKIAEKSPEAIAYLKTNHPFFWSRSKFSELSK 643

Query: 205 STEVTKSSSEQLRIWLSKFLDLNVAQRYTTITRTIAEMFQRRYLAGWEWVYDKITPTARQ 264
              +  + SE    W+ K  +L++   + T+ + I + F  R     + +  +I P+  +
Sbjct: 644 VDYINNNLSESFNNWVMKIKELHIVDLFDTLRQMIIDKFHLRSQLASK-MEGRIIPSIIK 702

Query: 265 QIIHNVFQSDGWNVDVPSN----NAVSFVSRHGFVFE--VNRELMTCSCRLWQLSGIPCE 318
            +         +NV V SN      VS VS  G V+   VN +  TCSCR WQ+SG PC 
Sbjct: 703 TLNEQSKNLKDYNV-VRSNCDDLAEVSVVSNKGVVWRHAVNLKAHTCSCRAWQVSGKPCN 761

Query: 319 HACRCIHSWA-DKLDKYVHRLWSVDEYRSAYG----------------PGMQMLREITHW 361
           HA   I S     ++ YV   +SV   R  Y                 PG +++R     
Sbjct: 762 HALAFIGSLRFPDMNGYVDECYSVQRLRQTYAGIWNPMTSKNMWTFVDPGFKLMR----- 816

Query: 362 EWQTKANVLPPMKNSTNSSGSNEANCHSKVT 392
               K    P    +     S+E+ C  K T
Sbjct: 817 ---PKLRRKPGRPRTHRIKASDESGCRKKRT 844

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	400
TAIR|locus:2197122	785	AT1G49920 "AT1G49920" [Arabido	0.482	0.245	0.247	9.4e-11
TAIR|locus:2014230	719	AT1G64260 "AT1G64260" [Arabido	0.815	0.453	0.210	1.1e-10
TAIR|locus:1006230722	750	AT1G64255 [Arabidopsis thalian	0.38	0.202	0.245	4.4e-08

TAIR|locus:2197122 AT1G49920 "AT1G49920" [Arabidopsis thaliana (taxid:3702)]

 Score = 182 (69.1 bits), Expect = 9.4e-11, P = 9.4e-11
 Identities = 51/206 (24%), Positives = 92/206 (44%)

Query:     1 MEDINDRNIVIIETTTD---HPLSPEVFNRMFVFLYDTAYAFKTRCRKLITIDGWEIDGP 57
             M  ++  N ++++   D   H      F  +F     +   F+  CR LI +D   + G 
Sbjct:   334 MSVLHSSNGLLVDWQYDSLTHDPEHASFRGLFWAFSQSIQGFQ-HCRPLIVVDTKNLGGK 392

Query:    58 YKSVMLVAVCRDGNDAVLPIAFCEVQEENLDSWAFFLTNLTYGLRFERGEGLCILADGDN 117
             YK  +++A   D  +   P+AF   +E ++DSW +FLT +    +  + +G+C+++  D 
Sbjct:   393 YKMKLMIASAFDATNQYFPLAFAVTKEVSVDSWRWFLTRIRE--KVTQRQGICLISSPDP 450

Query:   118 GVDEAVEE-----FLPYAVYRQCCFSLYGRMVGKFP--DVGVHSAFWGACRSTDRKNFIY 170
              +   + E       P+A +R C + L  ++    P  D  +H     A  S+ ++ F  
Sbjct:   451 DILAVINEPGSQWKEPWAYHRFCLYHLCSKLCSVSPGFDYNMHFLVDEAGSSSQKEEFDS 510

Query:   171 HMSIIETVNIECHNWLKDTDTKTWAL 196
             +M  I+  N E   WL       WAL
Sbjct:   511 YMKEIKERNPEAWKWLDQFPPHQWAL 536

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

TAIR|locus:2014230 AT1G64260 "AT1G64260" [Arabidopsis thaliana (taxid:3702)]

 Score = 181 (68.8 bits), Expect = 1.1e-10, P = 1.1e-10
 Identities = 75/356 (21%), Positives = 148/356 (41%)

Query:    43 CRKLITIDGWEIDGPYKSVMLVAVCRDGNDAVLPIAFCEVQEENLDSWAFFLTNLTYGLR 102
             CR LI +D   ++G Y+  +++A   D  +   P+AF   +E + DSW +F T +    +
Sbjct:   375 CRPLIVVDTKSLNGKYQLKLMIASGVDAANKFFPLAFAVTKEVSTDSWRWFFTKIRE--K 432

Query:   103 FERGEGLCILADGDNGVDEAVEE--FL---PYAVYRQCCFSLYGRMVGKFPDVGVHSAFW 157
               + + LC+++     +   V E   L   P+A ++ C   L  + +G F D  + S   
Sbjct:   433 VTQRKDLCLISSPLRDIVAVVNEPGSLWQEPWAHHKFCLNHLRSQFLGVFRDYNLESLVE 492

Query:   158 GACRSTDRKNFIYHMSIIETVNIECHNWLKDTDTKTWALFSMPQWVKSTEVTKSSSEQLR 217
              A  +  ++ F  +M+ I+  N E   WL       WAL +    ++   + +   E L 
Sbjct:   493 QAGSTNQKEEFDSYMNDIKEKNPEAWKWLDQIPRHKWAL-AHDSGLRYG-IIEIDREALF 550

Query:   218 IWLSKFLDLNVA----------QRYTTITRTIAEMFQ--RRYLAGWEWVYDKITPTARQQ 265
                  F    VA          +  ++  ++++ ++    R +   E   DK+       
Sbjct:   551 AVCRGFPYCTVAMTGGVMLMFDELRSSFDKSLSSIYSSLNRGVVYTEPFMDKLEEFMTDS 610

Query:   266 IIHNVFQSDGWNVDVPSNNAVSFVSRHGFVFEVNRELMTCSCRLWQLSGIPCEHACRCIH 325
             I + + Q +  +  V  ++      +  ++ ++N  + TC+CR +Q    PC HA     
Sbjct:   611 IPYVITQLERDSFKVSESS-----EKEEWIVQLN--VSTCTCRKFQSYKFPCLHALAVFE 663

Query:   326 SWADKLDKYVHRLWSVDEYRSAYGPGMQMLREITHWEWQTKANVL-PPMKN-STNS 379
                    +YV   ++V++Y   Y      + ++  W    +   L PP +  S N+
Sbjct:   664 KLKINPLQYVDECYTVEQYCKTYAATFSPVPDVAAWPEDCRVPTLFPPSQQLSPNT 719

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

TAIR|locus:1006230722 AT1G64255 [Arabidopsis thaliana (taxid:3702)]

 Score = 145 (56.1 bits), Expect = 4.4e-08, Sum P(2) = 4.4e-08
 Identities = 39/159 (24%), Positives = 71/159 (44%)

Query:    43 CRKLITIDGWEIDGPYKSVMLVAVCRDGNDAVLPIAFCEVQEENLDSWAFFLTNLTYGLR 102
             CR LI +D   ++  Y+  +++A   D  +   P+AF   +E + D W +FLT +    +
Sbjct:   382 CRPLIVVDTKNLNCEYQLKLMIASGVDAANKYFPLAFAVTKEVSTDIWRWFLTGIRE--K 439

Query:   103 FERGEGLCILADGDNGVDEAVEEF-----LPYAVYRQCCFSLYGRMVGKFPDVGVHSAFW 157
               + +GLC+++     +   V E       P+A +R      Y +    FP   + +   
Sbjct:   440 VTQRKGLCLISSPHPDIIAVVNESGSQWQEPWAYHRFSLNHFYSQFSRVFPSFCLGARIR 499

Query:   158 GACRSTDRKNFIYHMSIIETVNIECHNWLKDTDTKTWAL 196
              A  ++ +  F+ +M+ I+  N E   WL       WAL
Sbjct:   500 RAGSTSQKDEFVSYMNDIKEKNPEARKWLDQFPQNRWAL 538

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	6.3.2	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	400
pfam10551	88	pfam10551, MULE, MULE transposase domain	2e-09
smart00575	28	smart00575, ZnF_PMZ, plant mutator transposase zin	3e-06
pfam04434	38	pfam04434, SWIM, SWIM zinc finger	0.002

>gnl|CDD|220806 pfam10551, MULE, MULE transposase domain

 Score = 53.9 bits (130), Expect = 2e-09
 Identities = 26/77 (33%), Positives = 40/77 (51%), Gaps = 2/77 (2%)

Query: 59  KSVMLVAVCRDGNDAVLPIAFCEVQEENLDSWAFFLTNLTYGLRFERGEGLCILADGDNG 118
            +    AV  D +    P+AF  V +E+ +SW +FL  L   L       L I++DGD G
Sbjct: 5   TNKYKGAVGVDHHGQGFPLAFALVSDESEESWTWFLEGLKKALG--GRPPLTIISDGDKG 62

Query: 119 VDEAVEEFLPYAVYRQC 135
           + +A++E  P A +R C
Sbjct: 63  LKKAIKEVFPNARHRLC 79

This domain was identified by Babu and colleagues. Length = 88

>gnl|CDD|128845 smart00575, ZnF_PMZ, plant mutator transposase zinc finger

 Score = 42.9 bits (102), Expect = 3e-06
 Identities = 14/17 (82%), Positives = 15/17 (88%)

Query: 304 TCSCRLWQLSGIPCEHA 320
           TCSCR +QLSGIPC HA
Sbjct: 2   TCSCRKFQLSGIPCRHA 18

Length = 28

>gnl|CDD|218087 pfam04434, SWIM, SWIM zinc finger

 Score = 35.5 bits (82), Expect = 0.002
 Identities = 11/17 (64%), Positives = 14/17 (82%)

Query: 304 TCSCRLWQLSGIPCEHA 320
           +CSC  +QL GIPC+HA
Sbjct: 14  SCSCPAFQLYGIPCKHA 30

This domain is found in bacterial, archaeal and eukaryotic proteins. It is predicted to be organised into two N-terminal beta-strands and a C-terminal alpha helix, thus possibly adopting a fold similar to that of the C2H2 zinc finger (pfam00096). SWIM is thought to be a versatile domain that can interact with DNA or proteins in different contexts. Length = 38

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	400
PLN03097	846	FHY3 Protein FAR-RED ELONGATED HYPOCOTYL 3; Provis	100.0
PF00872	381	Transposase_mut: Transposase, Mutator family; Inte	99.91
PF10551	93	MULE: MULE transposase domain; InterPro: IPR018289	99.9
COG3328	379	Transposase and inactivated derivatives [DNA repli	99.68
smart00575	28	ZnF_PMZ plant mutator transposase zinc finger.	99.11
PF04434	40	SWIM: SWIM zinc finger; InterPro: IPR007527 Zinc f	98.4
PF01610	249	DDE_Tnp_ISL3: Transposase; InterPro: IPR002560 Aut	97.46
PF06782	470	UPF0236: Uncharacterised protein family (UPF0236);	97.0
PF13610	140	DDE_Tnp_IS240: DDE domain	96.47
PRK14702	262	insertion element IS2 transposase InsD; Provisiona	91.67
PRK09409	301	IS2 transposase TnpB; Reviewed	91.48
COG3316	215	Transposase and inactivated derivatives [DNA repli	90.29
PF00665	120	rve: Integrase core domain; InterPro: IPR001584 In	90.09
PHA02517	277	putative transposase OrfB; Reviewed	88.82
PF03050	271	DDE_Tnp_IS66: Transposase IS66 family ; InterPro:	85.59
PF04937	153	DUF659: Protein of unknown function (DUF 659); Int	82.65

>PLN03097 FHY3 Protein FAR-RED ELONGATED HYPOCOTYL 3; Provisional

Probab=100.00  E-value=1.3e-62  Score=507.32  Aligned_cols=335  Identities=14%  Similarity=0.231  Sum_probs=296.6

Q ss_pred             CCccCCCcEEEEEeccCCCCCccceeEEEEeehhhHHHHHhcCccEEEeeceeecCCcCeEEEEEEEecCCCCeeEeEEE
Q 046583            1 MEDINDRNIVIIETTTDHPLSPEVFNRMFVFLYDTAYAFKTRCRKLITIDGWEIDGPYKSVMLVAVCRDGNDAVLPIAFC   80 (400)
Q Consensus         1 ~~~~NPg~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~vi~iD~t~~~~~y~~~ll~a~g~d~~~~~~~la~a   80 (400)
                      |+..||+|+|++++|+     ++++.++||+++.++.+|. +|+|||.+|+||++|+|++||..++|+|+|+|.+++|||
T Consensus       249 ~q~~nP~Ffy~~qlDe-----~~~l~niFWaD~~sr~~Y~-~FGDvV~fDTTY~tN~y~~Pfa~FvGvNhH~qtvlfGca  322 (846)
T PLN03097        249 MQNMNSNFFYAVDLGE-----DQRLKNLFWVDAKSRHDYG-NFSDVVSFDTTYVRNKYKMPLALFVGVNQHYQFMLLGCA  322 (846)
T ss_pred             HHhhCCCceEEEEEcc-----CCCeeeEEeccHHHHHHHH-hcCCEEEEeceeeccccCcEEEEEEEecCCCCeEEEEEE
Confidence            5789999999999998     8999999999999999999 799999999999999999999999999999999999999


Q ss_pred             EeeccchhcHHHHHHHHhhcccccCCCCeEEEccCchhHHHHHHhhcCCcchhhcHhhhhhhhhccCC-----ChhHHHH
Q 046583           81 EVQEENLDSWAFFLTNLTYGLRFERGEGLCILADGDNGVDEAVEEFLPYAVYRQCCFSLYGRMVGKFP-----DVGVHSA  155 (400)
Q Consensus        81 ~~~~E~~esw~w~l~~l~~~l~~~~~~~~~iisD~~~~l~~Ai~~vfP~a~h~~C~~Hi~~n~~~~~~-----~~~~~~~  155 (400)
                      |+.+|+.+||.|+|+.|+++|  +++.|.+||||++.+|.+||++|||++.|++|+|||.+|+.+++.     .+.+...
T Consensus       323 Ll~dEt~eSf~WLf~tfl~aM--~gk~P~tIiTDqd~am~~AI~~VfP~t~Hr~C~wHI~~~~~e~L~~~~~~~~~f~~~  400 (846)
T PLN03097        323 LISDESAATYSWLMQTWLRAM--GGQAPKVIITDQDKAMKSVISEVFPNAHHCFFLWHILGKVSENLGQVIKQHENFMAK  400 (846)
T ss_pred             EcccCchhhHHHHHHHHHHHh--CCCCCceEEecCCHHHHHHHHHHCCCceehhhHHHHHHHHHHHhhHHhhhhhHHHHH
Confidence            999999999999999999996  579999999999999999999999999999999999999998875     3578999


Q ss_pred             HHHHhh-cccHHHHHHHHHHHH-hcchhhhhHhhcC--CccceeeeeCCCCcccccccCChHHHHHHHHhh--ccCChHH
Q 046583          156 FWGACR-STDRKNFIYHMSIIE-TVNIECHNWLKDT--DTKTWALFSMPQWVKSTEVTKSSSEQLRIWLSK--FLDLNVA  229 (400)
Q Consensus       156 ~~~~~~-a~~~~~f~~~~~~l~-~~~~~~~~~l~~~--~~~~W~~~~~~~~~~~~~~Ttn~~Es~N~~lk~--~r~~pi~  229 (400)
                      |..+++ +.++++|+..|..|. +++.+.++||+.+  .+++|+++|++..+..|+.||+++||+|+.|++  .+..++.
T Consensus       401 f~~cv~~s~t~eEFE~~W~~mi~ky~L~~n~WL~~LY~~RekWapaY~k~~F~agm~sTqRSES~Ns~fk~yv~~~tsL~  480 (846)
T PLN03097        401 FEKCIYRSWTEEEFGKRWWKILDRFELKEDEWMQSLYEDRKQWVPTYMRDAFLAGMSTVQRSESINAFFDKYVHKKTTVQ  480 (846)
T ss_pred             HHHHHhCCCCHHHHHHHHHHHHHhhcccccHHHHHHHHhHhhhhHHHhcccccCCcccccccccHHHHHHHHhCcCCCHH
Confidence            999887 789999999998875 6789999999998  899999999999999999999999999999998  5778899


Q ss_pred             HHHHHHHHHHHHHHHHHHhhh-----------------ccccCCccChhHHHHHhhhhcccCcceeEEeecCC----cce
Q 046583          230 QRYTTITRTIAEMFQRRYLAG-----------------WEWVYDKITPTARQQIIHNVFQSDGWNVDVPSNNA----VSF  288 (400)
Q Consensus       230 ~~~e~i~~~~~~~~~~r~~~~-----------------~~~~~~~~tp~~~~~l~~~~~~~~~~~~~v~~~~~----~~f  288 (400)
                      .|++.+...+..+..+..+..                 .+. +..|||.++++|  |+++..+..|.+...+.    ..|
T Consensus       481 ~Fv~qye~~l~~~~ekE~~aD~~s~~~~P~l~t~~piEkQA-s~iYT~~iF~kF--Q~El~~~~~~~~~~~~~dg~~~~y  557 (846)
T PLN03097        481 EFVKQYETILQDRYEEEAKADSDTWNKQPALKSPSPLEKSV-SGVYTHAVFKKF--QVEVLGAVACHPKMESQDETSITF  557 (846)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhcccCCcccccccHHHHHH-HHHhHHHHHHHH--HHHHHHhhheEEeeeccCCceEEE
Confidence            999988777765554433221                 111 388999999999  99999888887765432    357


Q ss_pred             -EEe--cCeEEEEEcc----CCccccCccccCCCCchhHHHHHhhcCC--ChhhhhhhhhcHHHHhh
Q 046583          289 -VSR--HGFVFEVNRE----LMTCSCRLWQLSGIPCEHACRCIHSWAD--KLDKYVHRLWSVDEYRS  346 (400)
Q Consensus       289 -V~~--~~~~~~V~l~----~~~CsC~~~~~~GiPC~Halav~~~~~~--~~~~~v~~~yt~~~~~~  346 (400)
                       |.+  ....|.|..+    ..+|+|++|+..||||+|||+|+...++  .|+.||.++||+++-..
T Consensus       558 ~V~~~~~~~~~~V~~d~~~~~v~CsC~kFE~~GILCrHaLkVL~~~~v~~IP~~YILkRWTKdAK~~  624 (846)
T PLN03097        558 RVQDFEKNQDFTVTWNQTKLEVSCICRLFEYKGYLCRHALVVLQMCQLSAIPSQYILKRWTKDAKSR  624 (846)
T ss_pred             EEEEecCCCcEEEEEecCCCeEEeeccCeecCccchhhHHHHHhhcCcccCchhhhhhhchhhhhhc
Confidence             765  3456777554    4699999999999999999999999887  59999999999998653

>PF00872 Transposase_mut: Transposase, Mutator family; InterPro: IPR001207 Autonomous mobile genetic elements such as transposon or insertion sequences (IS) encode an enzyme, transposase, that is required for excising and inserting the mobile element

Probab=99.91  E-value=2.8e-25  Score=216.43  Aligned_cols=200  Identities=19%  Similarity=0.250  Sum_probs=174.3

Q ss_pred             CCccceeEEEEeehhhHHHHHh----cC-ccEEEeeceeecCCcC-----eEEEEEEEecCCCCeeEeEEEEeeccchhc
Q 046583           20 LSPEVFNRMFVFLYDTAYAFKT----RC-RKLITIDGWEIDGPYK-----SVMLVAVCRDGNDAVLPIAFCEVQEENLDS   89 (400)
Q Consensus        20 ~~~~~~~~~f~~~~~~~~~~~~----~~-~~vi~iD~t~~~~~y~-----~~ll~a~g~d~~~~~~~la~a~~~~E~~es   89 (400)
                      .+.+.++++.=...+.+++|++    .. .|+|++||+|.+.+.+     ..+++|+|+|.+|+..+||+.+.+.|+.++
T Consensus       133 ~S~s~vSri~~~~~~~~~~w~~R~L~~~~y~~l~iD~~~~kvr~~~~~~~~~~~v~iGi~~dG~r~vLg~~~~~~Es~~~  212 (381)
T PF00872_consen  133 VSKSTVSRITKQLDEEVEAWRNRPLESEPYPYLWIDGTYFKVREDGRVVKKAVYVAIGIDEDGRREVLGFWVGDRESAAS  212 (381)
T ss_pred             cCchhhhhhhhhhhhhHHHHhhhccccccccceeeeeeecccccccccccchhhhhhhhhcccccceeeeecccCCccCE
Confidence            4567888888888899999985    34 5799999999987754     468999999999999999999999999999


Q ss_pred             HHHHHHHHhhcccccCCCCeEEEccCchhHHHHHHhhcCCcchhhcHhhhhhhhhccCCCh---hHHHHHHHHhhcccHH
Q 046583           90 WAFFLTNLTYGLRFERGEGLCILADGDNGVDEAVEEFLPYAVYRQCCFSLYGRMVGKFPDV---GVHSAFWGACRSTDRK  166 (400)
Q Consensus        90 w~w~l~~l~~~l~~~~~~~~~iisD~~~~l~~Ai~~vfP~a~h~~C~~Hi~~n~~~~~~~~---~~~~~~~~~~~a~~~~  166 (400)
                      |.-||+.|+++   |...+..||+|+++||.+||+++||++.+|+|++|+++|+.++++.+   .+...++.+..+.+.+
T Consensus       213 W~~~l~~L~~R---Gl~~~~lvv~Dg~~gl~~ai~~~fp~a~~QrC~vH~~RNv~~~v~~k~~~~v~~~Lk~I~~a~~~e  289 (381)
T PF00872_consen  213 WREFLQDLKER---GLKDILLVVSDGHKGLKEAIREVFPGAKWQRCVVHLMRNVLRKVPKKDRKEVKADLKAIYQAPDKE  289 (381)
T ss_pred             eeecchhhhhc---cccccceeeccccccccccccccccchhhhhheechhhhhccccccccchhhhhhccccccccccc
Confidence            99999999986   45779999999999999999999999999999999999999998754   5777888888888887


Q ss_pred             HHHHHHHHHH----hcchhhhhHhhcCCccceeeeeCCCCcccccccCChHHHHHHHHhh
Q 046583          167 NFIYHMSIIE----TVNIECHNWLKDTDTKTWALFSMPQWVKSTEVTKSSSEQLRIWLSK  222 (400)
Q Consensus       167 ~f~~~~~~l~----~~~~~~~~~l~~~~~~~W~~~~~~~~~~~~~~Ttn~~Es~N~~lk~  222 (400)
                      ++...++.+.    ...|++.+++++...+.|+..-|+...+--+.|||.+||+|+.||.
T Consensus       290 ~a~~~l~~f~~~~~~kyp~~~~~l~~~~~~~~tf~~fP~~~~~~i~TTN~iEsln~~irr  349 (381)
T PF00872_consen  290 EAREALEEFAEKWEKKYPKAAKSLEENWDELLTFLDFPPEHRRSIRTTNAIESLNKEIRR  349 (381)
T ss_pred             hhhhhhhhcccccccccchhhhhhhhccccccceeeecchhccccchhhhccccccchhh
Confidence            7777777764    3578899999998888888888877777778899999999999997

Transposases have been grouped into various families [, , ]. The mutator family of transposases consists of a number of elements that include, mutator from maize, IsT2 from Thiobacillus ferrooxidans, Is256 from Staphylococcus aureus, Is1201 from Lactobacillus helveticus, Is1081 from Mycobacterium bovis, IsRm3 from Rhizobium meliloti and others. More information about these proteins can be found at Protein of the Month: Transposase [].; GO: 0003677 DNA binding, 0004803 transposase activity, 0006313 transposition, DNA-mediated

>PF10551 MULE: MULE transposase domain; InterPro: IPR018289 This entry represents a domain found in Mutator-like elements (MULE)-encoded tranposases, some of which also contain a zinc-finger motif [, ]

Probab=99.90  E-value=8.6e-24  Score=165.13  Aligned_cols=90  Identities=29%  Similarity=0.447  Sum_probs=85.0

Q ss_pred             ceeecCCcCeEEEE---EEEecCCCCeeEeEEEEeeccchhcHHHHHHHHhhcccccCCCCeEEEccCchhHHHHHHhhc
Q 046583           51 GWEIDGPYKSVMLV---AVCRDGNDAVLPIAFCEVQEENLDSWAFFLTNLTYGLRFERGEGLCILADGDNGVDEAVEEFL  127 (400)
Q Consensus        51 ~t~~~~~y~~~ll~---a~g~d~~~~~~~la~a~~~~E~~esw~w~l~~l~~~l~~~~~~~~~iisD~~~~l~~Ai~~vf  127 (400)
                      |||++|+| ++++.   ++|+|++|+.+|+||+++++|+.++|.|||+.+++.++  .. |.+||||+++|+.+||+++|
T Consensus         1 ~T~~tn~~-~~l~~~~~~~~~d~~~~~~~v~~~l~~~e~~~~~~~~l~~~~~~~~--~~-p~~ii~D~~~~~~~Ai~~vf   76 (93)
T PF10551_consen    1 GTYKTNKY-GPLLYLMIAVGIDGNGRGFPVAFALVSSESEESYEWFLEKLKEAMP--QK-PKVIISDFDKALINAIKEVF   76 (93)
T ss_pred             Cccccccc-cccceeceEEEEcCCCCEEEEEEEEEcCCChhhhHHHHHHhhhccc--cC-ceeeeccccHHHHHHHHHHC
Confidence            79999999 88885   99999999999999999999999999999999999864  35 99999999999999999999


Q ss_pred             CCcchhhcHhhhhhhhh
Q 046583          128 PYAVYRQCCFSLYGRMV  144 (400)
Q Consensus       128 P~a~h~~C~~Hi~~n~~  144 (400)
                      |++.|++|.||+.+|++
T Consensus        77 P~~~~~~C~~H~~~n~k   93 (93)
T PF10551_consen   77 PDARHQLCLFHILRNIK   93 (93)
T ss_pred             CCceEehhHHHHHHhhC
Confidence            99999999999999974

This domain is also found in a transposase for the insertion sequence element IS256 in transposon Tn4001 [].

>COG3328 Transposase and inactivated derivatives [DNA replication, recombination, and repair]

Probab=99.68  E-value=1.5e-16  Score=152.26  Aligned_cols=188  Identities=15%  Similarity=0.206  Sum_probs=151.3

Q ss_pred             eehhhHHHHHh---cCccEEEeeceeecCC--cCeEEEEEEEecCCCCeeEeEEEEeeccchhcHHHHHHHHhhcccccC
Q 046583           31 FLYDTAYAFKT---RCRKLITIDGWEIDGP--YKSVMLVAVCRDGNDAVLPIAFCEVQEENLDSWAFFLTNLTYGLRFER  105 (400)
Q Consensus        31 ~~~~~~~~~~~---~~~~vi~iD~t~~~~~--y~~~ll~a~g~d~~~~~~~la~a~~~~E~~esw~w~l~~l~~~l~~~~  105 (400)
                      .+.+.+.+|..   +..+++++||+|++-+  -+.++++|+|++.+|+...+|+.+.+.|+ ..|.-||..|+..   +.
T Consensus       129 ~~~e~v~~~~~r~l~~~~~v~~D~~~~k~r~v~~~~~~ia~Gv~~eG~reilg~~~~~~e~-~~w~~~l~~l~~r---gl  204 (379)
T COG3328         129 RLDEKVKAWQNRPLGDYPYVYLDAKYVKVRSVRNKAVYIAIGVTEEGRREILGIWVGVRES-KFWLSFLLDLKNR---GL  204 (379)
T ss_pred             HHHHHHHHHHhccccCceEEEEecceeehhhhhhheeeeeeccCcccchhhhceeeecccc-hhHHHHHHHHHhc---cc
Confidence            34555666654   4568999999999988  35689999999999999999999999999 9999999999876   34


Q ss_pred             CCCeEEEccCchhHHHHHHhhcCCcchhhcHhhhhhhhhccCCChh---HHHHHHHHhhcccHHHHHHHHHH----HHhc
Q 046583          106 GEGLCILADGDNGVDEAVEEFLPYAVYRQCCFSLYGRMVGKFPDVG---VHSAFWGACRSTDRKNFIYHMSI----IETV  178 (400)
Q Consensus       106 ~~~~~iisD~~~~l~~Ai~~vfP~a~h~~C~~Hi~~n~~~~~~~~~---~~~~~~~~~~a~~~~~f~~~~~~----l~~~  178 (400)
                      .....+++|+++|+.+||.++||.+.+|+|..|+.+|+..+.+.++   ....+..+..+.+.++....+..    +...
T Consensus       205 ~~v~l~v~Dg~~gl~~aI~~v~p~a~~Q~C~vH~~Rnll~~v~~k~~d~i~~~~~~I~~a~~~e~~~~~~~~~~~~w~~~  284 (379)
T COG3328         205 SDVLLVVVDGLKGLPEAISAVFPQAAVQRCIVHLVRNLLDKVPRKDQDAVLSDLRSIYIAPDAEEALLALLAFSELWGKR  284 (379)
T ss_pred             cceeEEecchhhhhHHHHHHhccHhhhhhhhhHHHhhhhhhhhhhhhHHHHhhhhhhhccCCcHHHHHHHHHHHHhhhhh
Confidence            6677888899999999999999999999999999999999877553   44455555556665555555544    4445


Q ss_pred             chhhhhHhhcCCccceeeeeCCCCcccccccCChHHHHHHHHhh
Q 046583          179 NIECHNWLKDTDTKTWALFSMPQWVKSTEVTKSSSEQLRIWLSK  222 (400)
Q Consensus       179 ~~~~~~~l~~~~~~~W~~~~~~~~~~~~~~Ttn~~Es~N~~lk~  222 (400)
                      .|....|+.+...+.|...-|+...+--+.|||.+|++|+.++.
T Consensus       285 yP~i~~~~~~~~~~~~~F~~fp~~~r~~i~ttN~IE~~n~~ir~  328 (379)
T COG3328         285 YPAILKSWRNALEELLPFFAFPSEIRKIIYTTNAIESLNKLIRR  328 (379)
T ss_pred             cchHHHHHHHHHHHhcccccCcHHHHhHhhcchHHHHHHHHHHH
Confidence            78888888888777777766755555567899999999998875

>smart00575 ZnF_PMZ plant mutator transposase zinc finger

Probab=99.11  E-value=3.6e-11  Score=70.75  Aligned_cols=28  Identities=50%  Similarity=0.832  Sum_probs=25.5

Q ss_pred             CccccCccccCCCCchhHHHHHhhcCCC
Q 046583          303 MTCSCRLWQLSGIPCEHACRCIHSWADK  330 (400)
Q Consensus       303 ~~CsC~~~~~~GiPC~Halav~~~~~~~  330 (400)
                      .+|||++||..||||+|+|+|+...+++
T Consensus         1 ~~CsC~~~~~~gipC~H~i~v~~~~~~~   28 (28)
T smart00575        1 KTCSCRKFQLSGIPCRHALAAAIHIGLS   28 (28)
T ss_pred             CcccCCCcccCCccHHHHHHHHHHhCCC
Confidence            4799999999999999999999988763

>PF04434 SWIM: SWIM zinc finger; InterPro: IPR007527 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.40  E-value=2.1e-07  Score=60.04  Aligned_cols=30  Identities=33%  Similarity=0.727  Sum_probs=26.9

Q ss_pred             EEccCCccccCccccCCCCchhHHHHHhhc
Q 046583          298 VNRELMTCSCRLWQLSGIPCEHACRCIHSW  327 (400)
Q Consensus       298 V~l~~~~CsC~~~~~~GiPC~Halav~~~~  327 (400)
                      +++...+|||..|+..|.||+|++|++...
T Consensus        10 ~~~~~~~CsC~~~~~~~~~CkHi~av~~~~   39 (40)
T PF04434_consen   10 VSIEQASCSCPYFQFRGGPCKHIVAVLLAL   39 (40)
T ss_pred             ccccccEeeCCCccccCCcchhHHHHHHhh
Confidence            566788999999999999999999998764

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the SWIM (SWI2/SNF2 and MuDR) zinc-binding domain, which is found in a variety of prokaryotic and eukaryotic proteins, such as mitogen-activated protein kinase kinase kinase 1 (or MEKK1). It is also found in the related protein MEX (MEKK1-related protein X), a testis-expressed protein that acts as an E3 ubiquitin ligase through the action of E2 ubiquitin-conjugating enzymes in the proteasome degradation pathway; the SWIM domain is critical for MEX ubiquitination []. SWIM domains are also found in the homologous recombination protein Sws1 [], as well as in several hypothetical proteins. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding

>PF01610 DDE_Tnp_ISL3: Transposase; InterPro: IPR002560 Autonomous mobile genetic elements such as transposon or insertion sequences (IS) encode an enzyme, transposase, that is required for excising and inserting the mobile element

Probab=97.46  E-value=0.00016  Score=66.64  Aligned_cols=93  Identities=17%  Similarity=0.160  Sum_probs=70.9

Q ss_pred             EEeeceeecCCcCeEEEEEEEecC--CCCeeEeEEEEeeccchhcHHHHHHHH-hhcccccCCCCeEEEccCchhHHHHH
Q 046583           47 ITIDGWEIDGPYKSVMLVAVCRDG--NDAVLPIAFCEVQEENLDSWAFFLTNL-TYGLRFERGEGLCILADGDNGVDEAV  123 (400)
Q Consensus        47 i~iD~t~~~~~y~~~ll~a~g~d~--~~~~~~la~a~~~~E~~esw~w~l~~l-~~~l~~~~~~~~~iisD~~~~l~~Ai  123 (400)
                      |+||=+......+.  ++.+-+|.  +++.   .++++++-+.++..-||..+ -..   ......+|++|...+..+||
T Consensus         1 lgiDE~~~~~g~~~--y~t~~~d~~~~~~~---il~i~~~r~~~~l~~~~~~~~~~~---~~~~v~~V~~Dm~~~y~~~~   72 (249)
T PF01610_consen    1 LGIDEFAFRKGHRS--YVTVVVDLDTDTGR---ILDILPGRDKETLKDFFRSLYPEE---ERKNVKVVSMDMSPPYRSAI   72 (249)
T ss_pred             CeEeeeeeecCCcc--eeEEEEECccCCce---EEEEcCCccHHHHHHHHHHhCccc---cccceEEEEcCCCccccccc
Confidence            57887777554443  44455555  4433   24588999999998888877 332   23677899999999999999


Q ss_pred             HhhcCCcchhhcHhhhhhhhhccC
Q 046583          124 EEFLPYAVYRQCCFSLYGRMVGKF  147 (400)
Q Consensus       124 ~~vfP~a~h~~C~~Hi~~n~~~~~  147 (400)
                      ++.||+|.+..-.||+++++.+.+
T Consensus        73 ~~~~P~A~iv~DrFHvvk~~~~al   96 (249)
T PF01610_consen   73 REYFPNAQIVADRFHVVKLANRAL   96 (249)
T ss_pred             cccccccccccccchhhhhhhhcc
Confidence            999999999999999999987643

Transposases have been grouped into various families [, , ]. This family includes the IS204 [], IS1001 [], IS1096 [] and IS1165 [] transposases. More information about these proteins can be found at Protein of the Month: Transposase [].; GO: 0003677 DNA binding, 0004803 transposase activity, 0006313 transposition, DNA-mediated

>PF06782 UPF0236: Uncharacterised protein family (UPF0236); InterPro: IPR009620 This is a group of proteins of unknown function

Probab=97.00  E-value=0.007  Score=61.01  Aligned_cols=171  Identities=17%  Similarity=0.149  Sum_probs=111.6

Q ss_pred             EEEeeceeecCC--cC----eEE-EEEEE---ecC-CCCeeEeEE-EEe---eccchhcHHHHHHHHhhcccccCCCCeE
Q 046583           46 LITIDGWEIDGP--YK----SVM-LVAVC---RDG-NDAVLPIAF-CEV---QEENLDSWAFFLTNLTYGLRFERGEGLC  110 (400)
Q Consensus        46 vi~iD~t~~~~~--y~----~~l-l~a~g---~d~-~~~~~~la~-a~~---~~E~~esw~w~l~~l~~~l~~~~~~~~~  110 (400)
                      +|-.||+|...+  -+    ..+ .+=-|   ... .+....+.- .++   ...+.+-|.-+.+.+.+...+....-++
T Consensus       182 yIEaDg~~v~~qg~~~~~~e~k~~~vheG~~~~~~~~~R~~L~n~~~f~~~~~~~~~~~~~~v~~~i~~~Y~~~~~~~ii  261 (470)
T PF06782_consen  182 YIEADGVHVKLQGKKKKKKEVKLFVVHEGWEKEKPGGKRNKLKNKRHFVSGVGESAEEFWEEVLDYIYNHYDLDKTTKII  261 (470)
T ss_pred             EEecCcceecccccccccceeeEEEEEeeeeeeeccCCcceeecchheecccccchHHHHHHHHHHHHHhcCcccceEEE
Confidence            456789998644  21    122 33345   122 223333322 233   3566788999999998877654454688


Q ss_pred             EEccCchhHHHHHHhhcCCcchhhcHhhhhhhhhccCC-ChhHHHHHHHHhhcccHHHHHHHHHHHHhc--ch-------
Q 046583          111 ILADGDNGVDEAVEEFLPYAVYRQCCFSLYGRMVGKFP-DVGVHSAFWGACRSTDRKNFIYHMSIIETV--NI-------  180 (400)
Q Consensus       111 iisD~~~~l~~Ai~~vfP~a~h~~C~~Hi~~n~~~~~~-~~~~~~~~~~~~~a~~~~~f~~~~~~l~~~--~~-------  180 (400)
                      +.+|+...+.+++. .+|++.|++..+|+.+.+.+.++ .+.+.+.++++.+..+..+++..++.+.+.  .+       
T Consensus       262 ingDGa~WIk~~~~-~~~~~~~~LD~FHl~k~i~~~~~~~~~~~~~~~~al~~~d~~~l~~~L~~~~~~~~~~~~~~~i~  340 (470)
T PF06782_consen  262 INGDGASWIKEGAE-FFPKAEYFLDRFHLNKKIKQALSHDPELKEKIRKALKKGDKKKLETVLDTAESCAKDEEERKKIR  340 (470)
T ss_pred             EeCCCcHHHHHHHH-hhcCceEEecHHHHHHHHHHHhhhChHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhchHHHHHHH
Confidence            99999999998877 89999999999999999998875 456777777887888888888888877643  11       


Q ss_pred             hhhhHhhcCCccceeeeeCCCCcccccccCChHHHHHHHHhh
Q 046583          181 ECHNWLKDTDTKTWALFSMPQWVKSTEVTKSSSEQLRIWLSK  222 (400)
Q Consensus       181 ~~~~~l~~~~~~~W~~~~~~~~~~~~~~Ttn~~Es~N~~lk~  222 (400)
                      +...||..+....  ..|- .  +-|.......|+.++++..
T Consensus       341 ~~~~Yl~~n~~~i--~~y~-~--~~~~~g~g~ee~~~~~~s~  377 (470)
T PF06782_consen  341 KLRKYLLNNWDGI--KPYR-E--REGLRGIGAEESVSHVLSY  377 (470)
T ss_pred             HHHHHHHHCHHHh--hhhh-h--ccCCCccchhhhhhhHHHH
Confidence            2455665542211  1111 1  1344555668888877654

>PF13610 DDE_Tnp_IS240: DDE domain

Probab=96.47  E-value=0.0016  Score=54.50  Aligned_cols=81  Identities=19%  Similarity=0.101  Sum_probs=68.8

Q ss_pred             ccEEEeeceeecCCcCeEEEEEEEecCCCCeeEeEEEEeeccchhcHHHHHHHHhhcccccCCCCeEEEccCchhHHHHH
Q 046583           44 RKLITIDGWEIDGPYKSVMLVAVCRDGNDAVLPIAFCEVQEENLDSWAFFLTNLTYGLRFERGEGLCILADGDNGVDEAV  123 (400)
Q Consensus        44 ~~vi~iD~t~~~~~y~~~ll~a~g~d~~~~~~~la~a~~~~E~~esw~w~l~~l~~~l~~~~~~~~~iisD~~~~l~~Ai  123 (400)
                      ++.+.+|-||.+.+-+ ..+..-++|.+++  +|++-+...-+...=..||+.+.+..   ...|..|+||+.++...|+
T Consensus         1 ~~~w~~DEt~iki~G~-~~yl~~aiD~~~~--~l~~~ls~~Rd~~aA~~Fl~~~l~~~---~~~p~~ivtDk~~aY~~A~   74 (140)
T PF13610_consen    1 GDSWHVDETYIKIKGK-WHYLWRAIDAEGN--ILDFYLSKRRDTAAAKRFLKRALKRH---RGEPRVIVTDKLPAYPAAI   74 (140)
T ss_pred             CCEEEEeeEEEEECCE-EEEEEEeeccccc--chhhhhhhhcccccceeeccccceee---ccccceeecccCCccchhh
Confidence            4678999999986533 4555778999999  89999999999999999999887753   2679999999999999999


Q ss_pred             HhhcCCc
Q 046583          124 EEFLPYA  130 (400)
Q Consensus       124 ~~vfP~a  130 (400)
                      +++.+.-
T Consensus        75 ~~l~~~~   81 (140)
T PF13610_consen   75 KELNPEG   81 (140)
T ss_pred             hhccccc
Confidence            9999874

>PRK14702 insertion element IS2 transposase InsD; Provisional

Probab=91.67  E-value=4.9  Score=37.28  Aligned_cols=76  Identities=12%  Similarity=0.017  Sum_probs=51.7

Q ss_pred             CccEEEeeceeecCCcCeEEEEEEEecCCCCeeEeEEEEeec-cchhcHHHHHHHHhhc-ccc-cCCCCeEEEccCchhH
Q 046583           43 CRKLITIDGWEIDGPYKSVMLVAVCRDGNDAVLPIAFCEVQE-ENLDSWAFFLTNLTYG-LRF-ERGEGLCILADGDNGV  119 (400)
Q Consensus        43 ~~~vi~iD~t~~~~~y~~~ll~a~g~d~~~~~~~la~a~~~~-E~~esw~w~l~~l~~~-l~~-~~~~~~~iisD~~~~l  119 (400)
                      -..++..|-||.....++.++.++-+|.... .++||++... .+.+.-.-+|+...+. .+. ....|.+|.||+...-
T Consensus        86 pn~~W~~DiT~~~~~~g~~~Yl~~viD~~sR-~ivg~~is~~~~~~~~v~~~l~~A~~~~~~~~~~~~~~iihSD~Gsqy  164 (262)
T PRK14702         86 SNQRWCSDGFEFCCDNGERLRVTFALDCCDR-EALHWAVTTGGFNSETVQDVMLGAVERRFGNDLPSSPVEWLTDNGSCY  164 (262)
T ss_pred             CCCEEEeeeEEEEecCCcEEEEEEEEecccc-eeeeEEeccCcCCHHHHHHHHHHHHHHHhcccCCCCCeEEEcCCCccc
Confidence            4578999999987654556888888887776 5789999874 5666655566543322 221 1245788999987653

>PRK09409 IS2 transposase TnpB; Reviewed

Probab=91.48  E-value=6.1  Score=37.49  Aligned_cols=77  Identities=12%  Similarity=0.035  Sum_probs=53.0

Q ss_pred             cCccEEEeeceeecCCcCeEEEEEEEecCCCCeeEeEEEEeec-cchhcHHHHHHH-Hhhcccc-cCCCCeEEEccCchh
Q 046583           42 RCRKLITIDGWEIDGPYKSVMLVAVCRDGNDAVLPIAFCEVQE-ENLDSWAFFLTN-LTYGLRF-ERGEGLCILADGDNG  118 (400)
Q Consensus        42 ~~~~vi~iD~t~~~~~y~~~ll~a~g~d~~~~~~~la~a~~~~-E~~esw~w~l~~-l~~~l~~-~~~~~~~iisD~~~~  118 (400)
                      ....+++.|-||....-++.++.++-+|...+ .+|||++... .+.+.-.-+|+. +....+. ....|.+|.||+...
T Consensus       124 ~pN~~W~tDiT~~~~~~g~~~Yl~~ViD~~sR-~ivg~~~s~~~~~~~~v~~~l~~a~~~~~~~~~~~~~~iihSDrGsq  202 (301)
T PRK09409        124 ESNQRWCSDGFEFCCDNGERLRVTFALDCCDR-EALHWAVTTGGFNSETVQDVMLGAVERRFGNDLPSSPVEWLTDNGSC  202 (301)
T ss_pred             CCCCEEEeeeEEEEeCCCCEEEEEEEeecccc-eEEEEEeccCCCCHHHHHHHHHHHHHHHhccCCCCCCcEEecCCCcc
Confidence            35679999999986654556788888888777 5889999876 566665566654 3333221 123578899998765


Q ss_pred             H
Q 046583          119 V  119 (400)
Q Consensus       119 l  119 (400)
                      -
T Consensus       203 y  203 (301)
T PRK09409        203 Y  203 (301)
T ss_pred             c
Confidence            3

>COG3316 Transposase and inactivated derivatives [DNA replication, recombination, and repair]

Probab=90.29  E-value=0.8  Score=40.69  Aligned_cols=84  Identities=17%  Similarity=0.046  Sum_probs=65.1

Q ss_pred             CccEEEeeceeecCCcCeEEEEEEEecCCCCeeEeEEEEeeccchhcHHHHHHHHhhcccccCCCCeEEEccCchhHHHH
Q 046583           43 CRKLITIDGWEIDGPYKSVMLVAVCRDGNDAVLPIAFCEVQEENLDSWAFFLTNLTYGLRFERGEGLCILADGDNGVDEA  122 (400)
Q Consensus        43 ~~~vi~iD~t~~~~~y~~~ll~a~g~d~~~~~~~la~a~~~~E~~esw~w~l~~l~~~l~~~~~~~~~iisD~~~~l~~A  122 (400)
                      -++++.||-||.+.+-+.. ..-.++|.+  ..++.+-+...-+...=.-||..+++..    ..|.+|+||+.+....|
T Consensus        69 ~~~~w~vDEt~ikv~gkw~-ylyrAid~~--g~~Ld~~L~~rRn~~aAk~Fl~kllk~~----g~p~v~vtDka~s~~~A  141 (215)
T COG3316          69 AGDSWRVDETYIKVNGKWH-YLYRAIDAD--GLTLDVWLSKRRNALAAKAFLKKLLKKH----GEPRVFVTDKAPSYTAA  141 (215)
T ss_pred             cccceeeeeeEEeeccEee-ehhhhhccC--CCeEEEEEEcccCcHHHHHHHHHHHHhc----CCCceEEecCccchHHH
Confidence            3467999999998765443 222345655  4578888888888888888999888763    57889999999999999


Q ss_pred             HHhhcCCcchh
Q 046583          123 VEEFLPYAVYR  133 (400)
Q Consensus       123 i~~vfP~a~h~  133 (400)
                      +.++-+.+.|+
T Consensus       142 ~~~l~~~~ehr  152 (215)
T COG3316         142 LRKLGSEVEHR  152 (215)
T ss_pred             HHhcCcchhee
Confidence            99998865554

>PF00665 rve: Integrase core domain; InterPro: IPR001584 Integrase comprises three domains capable of folding independently and whose three-dimensional structures are known

Probab=90.09  E-value=1.7  Score=34.41  Aligned_cols=76  Identities=13%  Similarity=-0.049  Sum_probs=55.3

Q ss_pred             CccEEEeeceeec-CCcCeEEEEEEEecCCCCeeEeEEEEeeccchhcHHHHHHHHhhcccccCCCCeEEEccCchhHHH
Q 046583           43 CRKLITIDGWEID-GPYKSVMLVAVCRDGNDAVLPIAFCEVQEENLDSWAFFLTNLTYGLRFERGEGLCILADGDNGVDE  121 (400)
Q Consensus        43 ~~~vi~iD~t~~~-~~y~~~ll~a~g~d~~~~~~~la~a~~~~E~~esw~w~l~~l~~~l~~~~~~~~~iisD~~~~l~~  121 (400)
                      ....+.+|.+... ...++...+.+.+|..-.. .+++.+-..++.+....+|+......+  ...|.+|++|+..+...
T Consensus         5 p~~~~~~D~~~~~~~~~~~~~~~~~~iD~~S~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~p~~i~tD~g~~f~~   81 (120)
T PF00665_consen    5 PGERWQIDFTPMPIPDKGGRVYLLVFIDDYSRF-IYAFPVSSKETAEAALRALKRAIEKRG--GRPPRVIRTDNGSEFTS   81 (120)
T ss_dssp             TTTEEEEEEEEETGGCTT-CEEEEEEEETTTTE-EEEEEESSSSHHHHHHHHHHHHHHHHS---SE-SEEEEESCHHHHS
T ss_pred             CCCEEEEeeEEEecCCCCccEEEEEEEECCCCc-EEEEEeecccccccccccccccccccc--cccceeccccccccccc
Confidence            5678999999776 3455688888889976655 667888888888888888886655432  22399999999998764

However, the manner in which the N-terminal, catalytic, and C-terminal domains interact in the holoenzyme remains obscure. Numerous studies indicate that the enzyme functions as a multimer, minimally a dimer. The integrase proteins from Human immunodeficiency virus 1 (HIV-1) and Avian sarcoma virus (ASV) have been studied most carefully with respect to the structural basis of catalysis. Although the active site of ASV integrase does not undergo significant conformational changes on binding the required metal cofactor, that of HIV-1 does. This active site-mediated conformational change in HIV-1 reorganises the catalytic core and C-terminal domains and appears to promote an interaction that is favourable for catalysis []. Retroviral integrase is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. The presence of retrovirus integrase-related gene sequences in eukaryotes is known. Bacterial transposases involved in the transposition of the insertion sequence also belong to this group. HIV integrase catalyses the incorporation of virally derived DNA into the human genome. This unique step in the virus life cycle provides a variety of points for intervention and hence is an attractive target for the development of new therapeutics for the treatment of AIDS []. Substrate recognition by the retroviral integrase enzyme is critical for retroviral integration. To catalyse this recombination event, integrase must recognise and act on two types of substrates, viral DNA and host DNA, yet the necessary interactions exhibit markedly different degrees of specificity [].; GO: 0015074 DNA integration; PDB: 3AO3_A 3OVN_A 3AO5_A 3AO4_A 3AO1_A 1C6V_D 3HPG_A 3HPH_A 3OYD_A 3OYF_B ....

>PHA02517 putative transposase OrfB; Reviewed

Probab=88.82  E-value=4.2  Score=37.87  Aligned_cols=73  Identities=15%  Similarity=-0.037  Sum_probs=48.6

Q ss_pred             CccEEEeeceeecCCcCeEEEEEEEecCCCCeeEeEEEEeeccchhcHHHHHHHHhhcccccCCCCeEEEccCchhH
Q 046583           43 CRKLITIDGWEIDGPYKSVMLVAVCRDGNDAVLPIAFCEVQEENLDSWAFFLTNLTYGLRFERGEGLCILADGDNGV  119 (400)
Q Consensus        43 ~~~vi~iD~t~~~~~y~~~ll~a~g~d~~~~~~~la~a~~~~E~~esw~w~l~~l~~~l~~~~~~~~~iisD~~~~l  119 (400)
                      ...++..|.||..... +..++++.+|...+. ++||.+...++.+...-.|+......+  ...+.+|.||+....
T Consensus       109 pn~~w~~D~t~~~~~~-g~~yl~~iiD~~sr~-i~~~~~~~~~~~~~~~~~l~~a~~~~~--~~~~~i~~sD~G~~y  181 (277)
T PHA02517        109 PNQLWVADFTYVSTWQ-GWVYVAFIIDVFARR-IVGWRVSSSMDTDFVLDALEQALWARG--RPGGLIHHSDKGSQY  181 (277)
T ss_pred             CCCeEEeceeEEEeCC-CCEEEEEecccCCCe-eeecccCCCCChHHHHHHHHHHHHhcC--CCcCcEeeccccccc
Confidence            4568999999986543 456677777766554 778988888888865555555443322  223456778987653

>PF03050 DDE_Tnp_IS66: Transposase IS66 family ; InterPro: IPR004291 Transposase proteins are necessary for efficient DNA transposition

Probab=85.59  E-value=0.91  Score=42.27  Aligned_cols=86  Identities=15%  Similarity=0.136  Sum_probs=59.7

Q ss_pred             CccEEEeeceeec----CCc-CeEEEEEEEecCCCCeeEeEEEEeeccchhcHHHHHHHHhhcccccCCCCeEEEccCch
Q 046583           43 CRKLITIDGWEID----GPY-KSVMLVAVCRDGNDAVLPIAFCEVQEENLDSWAFFLTNLTYGLRFERGEGLCILADGDN  117 (400)
Q Consensus        43 ~~~vi~iD~t~~~----~~y-~~~ll~a~g~d~~~~~~~la~a~~~~E~~esw~w~l~~l~~~l~~~~~~~~~iisD~~~  117 (400)
                      -.+|+.+|-|..+    ++. ++-+-++++-+      .+.|.+.++-+.+.-.-+|..          -.-+++||+..
T Consensus        66 ~~~~~~~DET~~~vl~~~~g~~~~~Wv~~~~~------~v~f~~~~sR~~~~~~~~L~~----------~~GilvsD~y~  129 (271)
T PF03050_consen   66 SSPVVHADETGWRVLDKGKGKKGYLWVFVSPE------VVLFFYAPSRSSKVIKEFLGD----------FSGILVSDGYS  129 (271)
T ss_pred             ccceeccCCceEEEeccccccceEEEeeeccc------eeeeeecccccccchhhhhcc----------cceeeeccccc
Confidence            5789999999988    544 34455555444      566666676666654444333          22489999998


Q ss_pred             hHHHHHHhhcCCcchhhcHhhhhhhhhccCCC
Q 046583          118 GVDEAVEEFLPYAVYRQCCFSLYGRMVGKFPD  149 (400)
Q Consensus       118 ~l~~Ai~~vfP~a~h~~C~~Hi~~n~~~~~~~  149 (400)
                      +=..     +.++.|+.|+.|+.|.+.+....
T Consensus       130 ~Y~~-----~~~~~hq~C~AH~~R~~~~~~~~  156 (271)
T PF03050_consen  130 AYNK-----LAGITHQLCWAHLRRDFQDAAES  156 (271)
T ss_pred             cccc-----ccccccccccccccccccccccc
Confidence            8654     23889999999999999876653

This family includes the bacterial insertion sequence (IS) element, IS66, from Agrobacterium tumefaciens []. IS66 may cause genetic and structural variations of the T region and the vir region of the octopine Ti plasmids []. More information about these proteins can be found at Protein of the Month: Transposase [].

>PF04937 DUF659: Protein of unknown function (DUF 659); InterPro: IPR007021 These are transposase-like proteins with no known function

Probab=82.65  E-value=10  Score=32.11  Aligned_cols=110  Identities=13%  Similarity=0.160  Sum_probs=71.7

Q ss_pred             hhHHHHHhcCccEEEeeceeecCCcCeEEEEEEEecCCCCeeEeEEEEee-ccchhcHHHHHHHHhhcccccCCCCeEEE
Q 046583           34 DTAYAFKTRCRKLITIDGWEIDGPYKSVMLVAVCRDGNDAVLPIAFCEVQ-EENLDSWAFFLTNLTYGLRFERGEGLCIL  112 (400)
Q Consensus        34 ~~~~~~~~~~~~vi~iD~t~~~~~y~~~ll~a~g~d~~~~~~~la~a~~~-~E~~esw~w~l~~l~~~l~~~~~~~~~ii  112 (400)
                      ..++.|. ..+=-|..||--  +..+..++.++-.-+.|-.|.=..-.-. ..+.+...-+|+...+.+  +....+-||
T Consensus        24 ~~k~~w~-~~Gcsi~~DgWt--d~~~~~lInf~v~~~~g~~Flksvd~s~~~~~a~~l~~ll~~vIeeV--G~~nVvqVV   98 (153)
T PF04937_consen   24 EHKKSWK-RTGCSIMSDGWT--DRKGRSLINFMVYCPEGTVFLKSVDASSIIKTAEYLFELLDEVIEEV--GEENVVQVV   98 (153)
T ss_pred             HHHHHHH-hcCEEEEEecCc--CCCCCeEEEEEEEcccccEEEEEEecccccccHHHHHHHHHHHHHHh--hhhhhhHHh
Confidence            3455676 578889999974  4555566666555555655543332222 235555556666665554  456677799


Q ss_pred             ccCchhHHHHHH---hhcCCcchhhcHhhhhhhhhccCC
Q 046583          113 ADGDNGVDEAVE---EFLPYAVYRQCCFSLYGRMVGKFP  148 (400)
Q Consensus       113 sD~~~~l~~Ai~---~vfP~a~h~~C~~Hi~~n~~~~~~  148 (400)
                      ||-...+.+|-+   +-+|+..+.-|..|-+.-+.+.+.
T Consensus        99 TDn~~~~~~a~~~L~~k~p~ifw~~CaaH~inLmledi~  137 (153)
T PF04937_consen   99 TDNASNMKKAGKLLMEKYPHIFWTPCAAHCINLMLEDIG  137 (153)
T ss_pred             ccCchhHHHHHHHHHhcCCCEEEechHHHHHHHHHHHHh
Confidence            999999888844   447999999999998776555443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	400
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 56.8 bits (136), Expect = 8e-09
 Identities = 58/369 (15%), Positives = 113/369 (30%), Gaps = 80/369 (21%)

Query: 21  SPEVFNRMFVFLYDTAYAFKTRCRKL-----ITIDGWEIDGPYKSVMLVAVCRDG----- 70
             +VF +  V         +    +L     + IDG  + G  K+ + + VC        
Sbjct: 122 DNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDG--VLGSGKTWVALDVCLSYKVQCK 179

Query: 71  -NDAV--LPIAFCEVQEENLDSWAFFLTNLTYGLR---FERGEGLCILADGDNGVDEAVE 124
            +  +  L +  C   E  L+     L  L Y +      R +    +    + +   + 
Sbjct: 180 MDFKIFWLNLKNCNSPETVLEM----LQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELR 235

Query: 125 EFLPYAVYRQCCFSLYGRMVGKFPDVGVHSAFWGACR----STDRKNFIYHMSIIETVNI 180
             L    Y  C   L    V    +    +AF  +C+    +  ++   +  +   T   
Sbjct: 236 RLLKSKPYENCLLVL--LNVQ---NAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHIS 290

Query: 181 ECHNWLKDTDTKTWALFSMPQWVKSTEVTKSSSEQLRIWLSKFLDLNVAQRYTTITRTIA 240
             H+ +  T  +  +L    +++          E L           ++         IA
Sbjct: 291 LDHHSMTLTPDEVKSLLL--KYL-DCRPQDLPREVLTT-----NPRRLSI--------IA 334

Query: 241 EMFQRRYLAGWE-WVY---DKITPTARQQIIHN--------------VFQSDGWNVDVPS 282
           E   R  LA W+ W +   DK+T T  +  ++               VF        +P+
Sbjct: 335 ESI-RDGLATWDNWKHVNCDKLT-TIIESSLNVLEPAEYRKMFDRLSVFPPS---AHIPT 389

Query: 283 NNAVSFVSRHGFVFEVNRELMTCSCRLWQLSGIPCEHACRCIHSWADKL------DKYVH 336
              +  +     +      ++    +   +   P E     I S   +L      +  +H
Sbjct: 390 --ILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTIS-IPSIYLELKVKLENEYALH 446

Query: 337 RLWSVDEYR 345
           R   VD Y 
Sbjct: 447 RSI-VDHYN 454

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.1 bits (103), Expect = 7e-05
 Identities = 47/401 (11%), Positives = 99/401 (24%), Gaps = 138/401 (34%)

Query: 17  DHPLSPEVFNRMFVFLYDTAYAFKTRCRKLITIDGWEIDGPYKSVMLVAVCRDGNDAVLP 76
            +  + + +N           AF   C+ L+T         +K V          D +  
Sbjct: 251 LNVQNAKAWN-----------AFNLSCKILLTTR-------FKQVT---------DFLSA 283

Query: 77  IAFCEVQEENLDSWAFFLTNLTYGLRFERGEGLCILADGDNGVDEAVEEFLPYAVYRQCC 136
                +  ++                    E   +L      +D   ++ LP    R+  
Sbjct: 284 ATTTHISLDHHSM------------TLTPDEVKSLLL---KYLDCRPQD-LP----REVL 323

Query: 137 ------FSLYGRMVGKFPDVGVHSAFWGACRSTDRKNFIYHMSIIETVNIECHNWLKDTD 190
                  S+    +            W         N     +IIE+      N L+  +
Sbjct: 324 TTNPRRLSIIAESIRDGLA---TWDNW------KHVNCDKLTTIIES----SLNVLEPAE 370

Query: 191 TKT--WALFSMPQWVKSTEVTKSSSEQLRIWLSKFLDLNVAQRYTTITRTIAEMFQRRYL 248
            +     L   P       +  S      IW              +    +     +  L
Sbjct: 371 YRKMFDRLSVFPPSAHIPTILLS-----LIW---------FDVIKSDVMVVVNKLHKYSL 416

Query: 249 AGWEWVYDKITPTARQQIIHNVFQSDGWNVDVPSNNAVSFVSRHGFVFEVNRELMTCSCR 308
              +     I+       I +++      + V   N           + ++R +      
Sbjct: 417 VEKQPKESTIS-------IPSIYLE----LKVKLEN----------EYALHRSI------ 449

Query: 309 LWQLSGIPCEHACRCIHSW---ADKLDKYV-----HRLWSVDEYRSAYGPGMQMLREI-T 359
                 +   +  +   S       LD+Y      H L +++         M + R +  
Sbjct: 450 ------VDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPER-----MTLFRMVFL 498

Query: 360 HWEWQTKANVLPPMKNSTNSSGSNEANCHSKVTTLNDLFPY 400
            + +         ++       +      S + TL  L  Y
Sbjct: 499 DFRF---------LEQKIRHDSTAWNASGSILNTLQQLKFY 530

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.1 bits (98), Expect = 3e-04
 Identities = 55/363 (15%), Positives = 111/363 (30%), Gaps = 86/363 (23%)

Query: 53  EIDGPYKSVMLVAV--------CRDGNDAVLPI---AFCE--VQEENLDSWAFFLTNLTY 99
           E    YK ++ V          C+D  D    I      +  +  ++  S    L     
Sbjct: 13  EHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRL----- 67

Query: 100 GLRFERGEGLCILADGDNGVDEAVEEFLPYAVYRQCCFSLYGRMVGKFPDVGVHSAFWGA 159
              F       +L+  +  V + VEE L    Y+   F L   +  +     + +  +  
Sbjct: 68  ---FW-----TLLSKQEEMVQKFVEEVLRIN-YK---F-LMSPIKTEQRQPSMMTRMYIE 114

Query: 160 CRS---TDRKNFI-YHMSIIETVNIECHNWLKDTDTKTW-ALFSMPQWVKST---EVTKS 211
            R     D + F  Y++S ++    +    L +        +  +    K+    +V  S
Sbjct: 115 QRDRLYNDNQVFAKYNVSRLQPYL-KLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLS 173

Query: 212 SSEQLRI-----WLSKFLDLNVAQRYTTITRTIAEMFQRRYLAGWEWVYDKITPTARQQI 266
              Q ++     W      LN+    +    T+ EM Q+           +I P    + 
Sbjct: 174 YKVQCKMDFKIFW------LNLKNCNS--PETVLEMLQKLLY--------QIDPNWTSRS 217

Query: 267 IHNVFQSDGWNVDVPSNNAVSFVSRHGFVFEVNRELM----TCSCRLWQLSGIPCEHACR 322
            H+       N+ +  ++  + + R          L+      + + W    +    +C+
Sbjct: 218 DHSS------NIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNL----SCK 267

Query: 323 CI-----HSWADKLDKYVHRLWSVDEYRSAYGP--GMQMLREITHWEWQTKANVLPPMKN 375
            +         D L        S+D +     P     +L +        +   LP    
Sbjct: 268 ILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLD----CRPQDLPREVL 323

Query: 376 STN 378
           +TN
Sbjct: 324 TTN 326

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	400
3hot_A	345	Transposable element mariner, complete CDS; protei	86.87

>3hot_A Transposable element mariner, complete CDS; protein-DNA complex, synaptic complex, transposase, inverted DNA, DNA binding protein-DNA complex; HET: 5IU; 3.25A {Drosophila mauritiana} PDB: 3hos_A*

Probab=86.87  E-value=5.1  Score=36.98  Aligned_cols=71  Identities=18%  Similarity=0.140  Sum_probs=48.0

Q ss_pred             ccEEEeeceeecCC-----------------------cCeEEEEEEEecCCCCeeEeEEEEee---ccchhcHHHHHHHH
Q 046583           44 RKLITIDGWEIDGP-----------------------YKSVMLVAVCRDGNDAVLPIAFCEVQ---EENLDSWAFFLTNL   97 (400)
Q Consensus        44 ~~vi~iD~t~~~~~-----------------------y~~~ll~a~g~d~~~~~~~la~a~~~---~E~~esw~w~l~~l   97 (400)
                      ..||+.|-+.....                       .++.++++.+++.+|   .+++.+++   .-+.+.|.-+|+.+
T Consensus       150 ~~Iv~~DE~~~~~~~~~~~~~w~~~g~~~~~~~~~~~~~~~~~v~~~~~~~g---~~~~~~~~~~~~~~~~~y~~~L~~~  226 (345)
T 3hot_A          150 HRIVTGDEKWIFFVNPKRKKSYVDPGQPATSTARPNRFGKKTMLCVWWDQSG---VIYYELLKPGETVNAARYQQQLINL  226 (345)
T ss_dssp             GGEEEEEEEEEESCCCCCCEEEECSSSCCCCEECCCTTCCEEEEEEEEESSS---EEEEEEECSSCCCCHHHHHHHHHHH
T ss_pred             HhhhcccceeEEecCccceeeeccCCCCCCCCcCccCcCCcEEEEEEEcccC---ceeeEecCCCCcccHHHHHHHHHHH
Confidence            57888888776532                       445677777778777   56777776   56788888888876


Q ss_pred             hhcccc--cC----CCCeEEEccCch
Q 046583           98 TYGLRF--ER----GEGLCILADGDN  117 (400)
Q Consensus        98 ~~~l~~--~~----~~~~~iisD~~~  117 (400)
                      ...+..  ..    ..+.+++.|...
T Consensus       227 ~~~~~~~~p~~~~~~~~~~~~~Dna~  252 (345)
T 3hot_A          227 NRALQRKRPEYQKRQHRVIFLHDNAP  252 (345)
T ss_dssp             HHHHHHHSTTCC---CCCEEECCCCT
T ss_pred             HHHHHHhchhhhcCCCceEEEECCCC
Confidence            543210  11    346789999865

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00