Citrus Sinensis ID: 046607


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30----
MNFNNYTEWIALSSQGGSGFDPPRWFDEESPPEV
cccccHHHEEEHHccccccccccccccccccccc
ccccccHHHEEEcccccccccccccccccccccc
MNFNNYTEWIALssqggsgfdpprwfdeesppev
MNFNNYTEWIAlssqggsgfdpprwfdeesppev
MNFNNYTEWIALSSQGGSGFDPPRWFDEESPPEV
*****YTEWIA***********************
***NNYTEWIALSSQ*G*GFDP**WF********
MNFNNYTEWIALSSQGGSGFDPPRWF********
*NFNNYTEWIALSS***SGFDPP**FD*******
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooo
oooooooooohhhhhhhhhhhhhhhhhhhhiiii
iiiiiiiihhhhhhhhhhhhhhhhoooooooooo
oooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MNFNNYTEWIALSSQGGSGFDPPRWFDEESPPEV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST ?

No hits with e-value below 0.001 by BLAST


Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

No hits with e-value below 0.001 by BLAST


Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

No confident hit detected by STRING


Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 34
PRK1438882 hypothetical protein; Provisional 98.83
PRK1438384 hypothetical protein; Provisional 98.8
TIGR0027875 conserved hypothetical protein YidD. This model de 98.78
PRK1439063 hypothetical protein; Provisional 98.78
PRK1438268 hypothetical protein; Provisional 98.78
PRK1437373 hypothetical protein; Provisional 98.77
PRK1437181 hypothetical protein; Provisional 98.77
PRK1438456 hypothetical protein; Provisional 98.73
PRK14374118 hypothetical protein; Provisional 98.7
PRK1438081 hypothetical protein; Provisional 98.69
PRK1438784 hypothetical protein; Provisional 98.68
PRK1438596 hypothetical protein; Provisional 98.67
PRK1437995 hypothetical protein; Provisional 98.66
PRK1438998 hypothetical protein; Provisional 98.62
PRK14378103 hypothetical protein; Provisional 98.61
PRK14386106 hypothetical protein; Provisional 98.6
PRK1437570 hypothetical protein; Provisional 98.58
PRK14370120 hypothetical protein; Provisional 98.58
PRK14377104 hypothetical protein; Provisional 98.57
PRK1437297 hypothetical protein; Provisional 98.57
PRK14381103 hypothetical protein; Provisional 98.56
PRK1439184 hypothetical protein; Provisional 98.55
PRK0004193 hypothetical protein; Validated 98.54
PF0180968 Haemolytic: Haemolytic domain; InterPro: IPR002696 98.45
PRK14369119 hypothetical protein; Provisional 98.41
PRK14376176 hypothetical protein; Provisional 98.37
COG075992 Uncharacterized conserved protein [Function unknow 98.33
>PRK14388 hypothetical protein; Provisional Back     alignment and domain information
Probab=98.83  E-value=2.6e-09  Score=61.00  Aligned_cols=25  Identities=16%  Similarity=0.090  Sum_probs=20.4

Q ss_pred             hhhhHhh--hhcCCCCCCCCC-CCCCCC
Q 046607            4 NNYTEWI--ALSSQGGSGFDP-PRWFDE   28 (34)
Q Consensus         4 ~~LTaWR--RCnP~gg~G~DP-prw~~~   28 (34)
                      .+||+||  |||||+.+|||| |.-.++
T Consensus        47 ~~l~~~RilRC~P~~~gG~DpVP~~~~~   74 (82)
T PRK14388         47 LWFTFKRIIKCQPFCDGGYDTVPISIKN   74 (82)
T ss_pred             HHHHHHHHhcCCCCCCCCcCCCCCcccC
Confidence            5799999  999999999999 443333



>PRK14383 hypothetical protein; Provisional Back     alignment and domain information
>TIGR00278 conserved hypothetical protein YidD Back     alignment and domain information
>PRK14390 hypothetical protein; Provisional Back     alignment and domain information
>PRK14382 hypothetical protein; Provisional Back     alignment and domain information
>PRK14373 hypothetical protein; Provisional Back     alignment and domain information
>PRK14371 hypothetical protein; Provisional Back     alignment and domain information
>PRK14384 hypothetical protein; Provisional Back     alignment and domain information
>PRK14374 hypothetical protein; Provisional Back     alignment and domain information
>PRK14380 hypothetical protein; Provisional Back     alignment and domain information
>PRK14387 hypothetical protein; Provisional Back     alignment and domain information
>PRK14385 hypothetical protein; Provisional Back     alignment and domain information
>PRK14379 hypothetical protein; Provisional Back     alignment and domain information
>PRK14389 hypothetical protein; Provisional Back     alignment and domain information
>PRK14378 hypothetical protein; Provisional Back     alignment and domain information
>PRK14386 hypothetical protein; Provisional Back     alignment and domain information
>PRK14375 hypothetical protein; Provisional Back     alignment and domain information
>PRK14370 hypothetical protein; Provisional Back     alignment and domain information
>PRK14377 hypothetical protein; Provisional Back     alignment and domain information
>PRK14372 hypothetical protein; Provisional Back     alignment and domain information
>PRK14381 hypothetical protein; Provisional Back     alignment and domain information
>PRK14391 hypothetical protein; Provisional Back     alignment and domain information
>PRK00041 hypothetical protein; Validated Back     alignment and domain information
>PF01809 Haemolytic: Haemolytic domain; InterPro: IPR002696 This is a family of short (70 amino acid) hypothetical proteins from various bacteria Back     alignment and domain information
>PRK14369 hypothetical protein; Provisional Back     alignment and domain information
>PRK14376 hypothetical protein; Provisional Back     alignment and domain information
>COG0759 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

No hit with e-value below 0.005

Structure Templates Detected by HHsearch ?

No hit with probability above 80.00


Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

No hit with probability above 80.00