Citrus Sinensis ID: 046620

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------22
MGNYDCIFDWELQTDGLILIKNLYQVSKPGYMSGPLVCENVIGVVHDHFITLHLDMDIDGANNSFVEVHLEKQETSPGESPRKSYLKIEQCLNLYDPSEFHVINPSRRSRLGNPSGHKAVPGGNAATLLRNTATPSDRNEQWAGGLLVYQSREDEALAVWSEMWNFNFPVMPTVPSSFDLEPVNFFHRNPTLRLPADCFAISFHWLSFHPITCTQRKFT
cccccEEEEEEEEEccEEEEEEEEEEcccccccccEEcccEEEEEEcEEEEEEEEccccccccEEEEEEEEEccccccccccccEEEEEEEcccccccEEEEEcccccccccccEEEEEEcccccccccccccccccccccccccccEEEcccccccEEEEEEccccccccccEEEEEEEEEccccccccccccccccccccEEccccccccccccccc
cccccEEEEEEEEcccEEEEEEEEEccccccccEEEEEccEEEEcEEEEEEEEEEEcccccEEEEEEEEEEEEEcccccccccEEEEEEHHHccccccEEEEEccccccccccccEEEEccccccccccccccEEcccccccccccccEcccccccHHHHHHccccHccccccEEEEcEEEEccccccccccccccccccccccccccccccccccccc
mgnydcifDWELQTDGLILIKNLyqvskpgymsgplvcENVIGVVHDHFITLHLdmdidgannSFVEVHLekqetspgesprksylKIEQclnlydpsefhvinpsrrsrlgnpsghkavpggnaatllrntatpsdrneqwaGGLLVYQSREDEALAVWSEMWnfnfpvmptvpssfdlepvnffhrnptlrlpadcFAISFHwlsfhpitctqrkft
MGNYDCIFDWELQTDGLILIKNLYQVSKPGYMSGPLVCENVIGVVHDHFITLHLDMDIDGANNSFVEVHLEkqetspgesprksYLKIEQCLNLYDPSEFHVINPSRRSRLGNPSGHKAVPGGNAATLLRNTATPSDRNEQWAGGLLVYQSREDEALAVWSEMWNFNFPVMPTVPSSFDLEPVNFFHRNPTLRLPADCFAISFHWLSFHPITCTQRKFT
MGNYDCIFDWELQTDGLILIKNLYQVSKPGYMSGPLVCENVIGVVHDHFITLHLDMDIDGANNSFVEVHLEKQETSPGESPRKSYLKIEQCLNLYDPSEFHVINPSRRSRLGNPSGHKAVPGGNAATLLRNTATPSDRNEQWAGGLLVYQSREDEALAVWSEMWNFNFPVMPTVPSSFDLEPVNFFHRNPTLRLPADCFAISFHWLSFHPITCTQRKFT
***YDCIFDWELQTDGLILIKNLYQVSKPGYMSGPLVCENVIGVVHDHFITLHLDMDIDGANNSFVEVH***************YLKIEQCLNLYDPSEFHVI*************************************QWAGGLLVYQSREDEALAVWSEMWNFNFPVMPTVPSSFDLEPVNFFHRNPTLRLPADCFAISFHWLSFHPITCT*****
MGNYDCIFDWELQTDGLILIKNLYQVSKPGYMSGPLVCENVIGVVHDHFITLHLDMDIDGANNSFVEVHLEKQETSPGESPRKSYLKIEQCLNLYDPSEFHVINPSRRSRLGNPSGHKAVPGGNAATLLRNTATPSDRNEQWAGGLLVYQSREDEALAVWSEMWNFNFPVMPTVPSSFDLEPVNFFHRNPTLRLPADCFA*****L*****TCT*****
MGNYDCIFDWELQTDGLILIKNLYQVSKPGYMSGPLVCENVIGVVHDHFITLHLDMDIDGANNSFVEVHL*************SYLKIEQCLNLYDPSEFHVINPSRRSRLGNPSGHKAVPGGNAATLLRNTATPSDRNEQWAGGLLVYQSREDEALAVWSEMWNFNFPVMPTVPSSFDLEPVNFFHRNPTLRLPADCFAISFHWLSFHPITCTQRKFT
MGNYDCIFDWELQTDGLILIKNLYQVSKPGYMSGPLVCENVIGVVHDHFITLHLDMDIDGANNSFVEVHLEKQETSPGESPRKSYLKIEQCLNLYDPSEFHVINPSRRSRLGNPSGHKAVPGGNAATLLRNTATPSDRNEQWAGGLLVYQSREDEALAVWSEMWNFNFPVMPTVPSSFDLEPVNFFHRNPTLRLPADCFAISFHWLSFHPITCT*****
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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oooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MGNYDCIFDWELQTDGLILIKNLYQVSKPGYMSGPLVCENVIGVVHDHFITLHLDMDIDGANNSFVEVHLEKQETSPGESPRKSYLKIEQCLNLYDPSEFHVINPSRRSRLGNPSGHKAVPGGNAATLLRNTATPSDRNEQWAGGLLVYQSREDEALAVWSEMWNFNFPVMPTVPSSFDLEPVNFFHRNPTLRLPADCFAISFHWLSFHPITCTQRKFT
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query219 2.2.26 [Sep-21-2011]
Q8H1H9712 Primary amine oxidase OS= no no 0.876 0.269 0.466 2e-55
P49252667 Primary amine oxidase (Fr N/A no 0.913 0.299 0.330 3e-30
Q43077674 Primary amine oxidase OS= N/A no 0.872 0.283 0.326 3e-29
P49250755 Primary amine oxidase OS= yes no 0.853 0.247 0.273 2e-12
P46883757 Primary amine oxidase OS= N/A no 0.872 0.252 0.243 5e-12
P80695752 Primary amine oxidase OS= yes no 0.849 0.247 0.261 1e-11
Q07121648 Primary amine oxidase OS= N/A no 0.872 0.294 0.238 9e-10
Q07123648 Copper methylamine oxidas N/A no 0.872 0.294 0.238 1e-09
Q59118684 Histamine oxidase OS=Arth N/A no 0.904 0.289 0.247 2e-09
P46881638 Phenylethylamine oxidase N/A no 0.894 0.307 0.239 5e-06
>sp|Q8H1H9|AMO_ARATH Primary amine oxidase OS=Arabidopsis thaliana GN=At1g62810 PE=2 SV=1 Back     alignment and function desciption
 Score =  215 bits (548), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 119/255 (46%), Positives = 155/255 (60%), Gaps = 63/255 (24%)

Query: 1   MGNYDCIFDWELQTDGLILI---------------KNLYQVSKPGYMSGPLVCENVIGVV 45
           +GNYD IFDWE QTDGLI +                N+  +      +GPL+ ENVIGVV
Sbjct: 439 VGNYDYIFDWEFQTDGLIRVTVAASGMLMVKGTPYDNVDDLGDREDDAGPLISENVIGVV 498

Query: 46  HDHFITLHLDMDIDG-ANNSFVEVHLEKQETSPGESPRKSYLKIEQC-----------LN 93
           HDHFIT HLDMDIDG  NNS V+VHLEKQ    G+SPRKSYLK+++            L+
Sbjct: 499 HDHFITFHLDMDIDGPMNNSLVKVHLEKQRVPTGKSPRKSYLKVKKYIAKTEKDAQIKLS 558

Query: 94  LYDPSEFHVINPSRRSRLGNPSGHKAVPGGNAATLLRNT---------------ATPSDR 138
           LYDP EFH++NP+R+SR+GNP+G++ VPGGNAA+LL +                 TP +R
Sbjct: 559 LYDPYEFHIVNPNRKSRVGNPAGYRIVPGGNAASLLDHDDPPQIRGAFTNNQIWVTPYNR 618

Query: 139 NEQWAGGLLVYQSREDEALAVWSE-----------MW----------NFNFPVMPTVPSS 177
           +EQ+AGG+L+YQS+ D+ L VWS+           +W            ++PVMPTV +S
Sbjct: 619 SEQYAGGVLIYQSQGDDTLQVWSDRDRSIENKDIVLWYTLGFHHVPCQEDYPVMPTVAAS 678

Query: 178 FDLEPVNFFHRNPTL 192
           F+L+P NFF  NP L
Sbjct: 679 FELKPANFFESNPIL 693

Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 4EC: .EC: 3EC: .EC: 2EC: 1
>sp|P49252|AMO_LENCU Primary amine oxidase (Fragment) OS=Lens culinaris PE=1 SV=3 Back     alignment and function description
>sp|Q43077|AMO_PEA Primary amine oxidase OS=Pisum sativum PE=1 SV=1 Back     alignment and function description
>sp|P49250|AMO_ENTAE Primary amine oxidase OS=Enterobacter aerogenes GN=maoA PE=1 SV=1 Back     alignment and function description
>sp|P46883|AMO_ECOLI Primary amine oxidase OS=Escherichia coli (strain K12) GN=tynA PE=1 SV=1 Back     alignment and function description
>sp|P80695|AMO_KLEOK Primary amine oxidase OS=Klebsiella oxytoca (strain ATCC 8724 / DSM 4798 / JCM 20051 / NBRC 3318 / NRRL B-199 / KCTC 1686) GN=maoA PE=1 SV=2 Back     alignment and function description
>sp|Q07121|AMO1_ARTS1 Primary amine oxidase OS=Arthrobacter sp. (strain P1) GN=maoI PE=1 SV=1 Back     alignment and function description
>sp|Q07123|AMO2_ARTS1 Copper methylamine oxidase OS=Arthrobacter sp. (strain P1) GN=maoII PE=1 SV=1 Back     alignment and function description
>sp|Q59118|AMOH_ARTGO Histamine oxidase OS=Arthrobacter globiformis PE=1 SV=3 Back     alignment and function description
>sp|P46881|PAOX_ARTGO Phenylethylamine oxidase OS=Arthrobacter globiformis PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query219
255537061 718 Amine oxidase [copper-containing] precur 0.881 0.268 0.533 3e-62
224124964 359 predicted protein [Populus trichocarpa] 0.881 0.537 0.505 5e-59
255537059 730 Amine oxidase [copper-containing] precur 0.904 0.271 0.476 9e-58
224124968 594 predicted protein [Populus trichocarpa] 0.890 0.328 0.486 2e-57
357462275 731 Primary amine oxidase [Medicago truncatu 0.890 0.266 0.466 1e-56
356534598 734 PREDICTED: primary amine oxidase-like [G 0.890 0.265 0.478 3e-56
297815462 687 hypothetical protein ARALYDRAFT_484808 [ 0.885 0.282 0.486 5e-56
15229749 687 putative copper amine oxidase [Arabidops 0.885 0.282 0.482 1e-55
5733089 735 amine oxidase [Canavalia lineata] 0.890 0.265 0.466 2e-54
356557184 732 PREDICTED: primary amine oxidase-like [G 0.890 0.266 0.466 2e-54
>gi|255537061|ref|XP_002509597.1| Amine oxidase [copper-containing] precursor, putative [Ricinus communis] gi|223549496|gb|EEF50984.1| Amine oxidase [copper-containing] precursor, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  243 bits (621), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 136/255 (53%), Positives = 157/255 (61%), Gaps = 62/255 (24%)

Query: 1   MGNYDCIFDWELQTDGLILIK---------------NLYQVSKPGYMSGPLVCENVIGVV 45
           + NYD IFDWE QTDGLI IK               N+YQ+     MS PL+ ENVIGVV
Sbjct: 446 LANYDYIFDWEFQTDGLIRIKVSLSGMLMVKGTPYQNVYQILNQEEMSNPLISENVIGVV 505

Query: 46  HDHFITLHLDMDIDGANNSFVEVHLEKQETSPGESPRKSYLKIEQ-----------CLNL 94
           HDHFI  HLDMDID  NNSFVE++L K+ET PGESPRKSYLK ++            LNL
Sbjct: 506 HDHFINFHLDMDIDDINNSFVEINLVKEETFPGESPRKSYLKAKRKIAKTEEEARVKLNL 565

Query: 95  YDPSEFHVINPSRRSRLGNPSGHKAVPGGNAATLLRNT---------------ATPSDRN 139
           YDPSEF VINPSRRSRLGNP+G+K VPG NAA+LL +                 TP +RN
Sbjct: 566 YDPSEFQVINPSRRSRLGNPAGYKVVPGSNAASLLDHLDPPQLRSAFTNNQIWVTPYNRN 625

Query: 140 EQWAGGLLVYQSREDEALAVWSE-----------MW----------NFNFPVMPTVPSSF 178
           EQWAGGLLVYQS+ D+ L VWS+           +W            +FPVMP V SSF
Sbjct: 626 EQWAGGLLVYQSKGDDTLDVWSQRNRDIENKDIVLWYTLGFHHIPCQEDFPVMPVVSSSF 685

Query: 179 DLEPVNFFHRNPTLR 193
           +L+PVNFF  NP LR
Sbjct: 686 ELKPVNFFESNPILR 700

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class: N/A

Phylum: Streptophyta

Superkingdom:

>gi|224124964|ref|XP_002329857.1| predicted protein [Populus trichocarpa] gi|222871094|gb|EEF08225.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255537059|ref|XP_002509596.1| Amine oxidase [copper-containing] precursor, putative [Ricinus communis] gi|223549495|gb|EEF50983.1| Amine oxidase [copper-containing] precursor, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224124968|ref|XP_002329858.1| predicted protein [Populus trichocarpa] gi|222871095|gb|EEF08226.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|357462275|ref|XP_003601419.1| Primary amine oxidase [Medicago truncatula] gi|355490467|gb|AES71670.1| Primary amine oxidase [Medicago truncatula] Back     alignment and taxonomy information
>gi|356534598|ref|XP_003535840.1| PREDICTED: primary amine oxidase-like [Glycine max] Back     alignment and taxonomy information
>gi|297815462|ref|XP_002875614.1| hypothetical protein ARALYDRAFT_484808 [Arabidopsis lyrata subsp. lyrata] gi|297321452|gb|EFH51873.1| hypothetical protein ARALYDRAFT_484808 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|15229749|ref|NP_189953.1| putative copper amine oxidase [Arabidopsis thaliana] gi|7362792|emb|CAB83068.1| amine oxidase-like protein [Arabidopsis thaliana] gi|20465252|gb|AAM19946.1| AT3g43670/F23N14_50 [Arabidopsis thaliana] gi|29028746|gb|AAO64752.1| At3g43670/F23N14_50 [Arabidopsis thaliana] gi|332644296|gb|AEE77817.1| putative copper amine oxidase [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|5733089|gb|AAD49420.1|AF172681_1 amine oxidase [Canavalia lineata] Back     alignment and taxonomy information
>gi|356557184|ref|XP_003546898.1| PREDICTED: primary amine oxidase-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query219
TAIR|locus:2080173687 AT3G43670 [Arabidopsis thalian 0.593 0.189 0.579 1.5e-48
TAIR|locus:2026267712 CuAO1 "COPPER AMINE OXIDASE1" 0.593 0.182 0.547 1e-45
TAIR|locus:2139054300 AT4G12280 [Arabidopsis thalian 0.538 0.393 0.492 1.5e-39
TAIR|locus:2139069741 AT4G12290 [Arabidopsis thalian 0.538 0.159 0.515 2.5e-37
TAIR|locus:2028666741 AT1G31670 [Arabidopsis thalian 0.721 0.213 0.341 2.3e-24
UNIPROTKB|Q43077674 Q43077 "Primary amine oxidase" 0.630 0.204 0.316 8e-21
TAIR|locus:2129520650 AO1 "amine oxidase 1" [Arabido 0.643 0.216 0.335 1.1e-20
TAIR|locus:2028636677 AT1G31690 [Arabidopsis thalian 0.630 0.203 0.319 9.1e-20
TAIR|locus:2028606681 AT1G31710 [Arabidopsis thalian 0.630 0.202 0.310 1.8e-18
UNIPROTKB|P46883757 tynA "TynA" [Escherichia coli 0.552 0.159 0.304 1.1e-14
TAIR|locus:2080173 AT3G43670 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 430 (156.4 bits), Expect = 1.5e-48, Sum P(2) = 1.5e-48
 Identities = 91/157 (57%), Positives = 112/157 (71%)

Query:    33 SGPLVCENVIGVVHDHFITLHLDMDIDG-ANNSFVEVHLEKQETSPGESPRKSYLKIEQC 91
             SGPL+ ENVIGVVHDHFI+ HLDMDIDG ANNSFV+VHLEKQ   PGES RKSYLK+++ 
Sbjct:   467 SGPLISENVIGVVHDHFISFHLDMDIDGSANNSFVKVHLEKQRLPPGESRRKSYLKVKKY 526

Query:    92 -----------LNLYDPSEFHVINPSRRSRLGNPSGHKAVPGGNAATLLRNTATPS---- 136
                        ++LYDP EFH++NP+R SRLGNP+G+K VPGGNAA+LL +   P     
Sbjct:   527 VAKTEKDAQIKMSLYDPYEFHLVNPNRLSRLGNPAGYKLVPGGNAASLLDHDDPPQMRGA 586

Query:   137 -----------DRNEQWAGGLLVYQSREDEALAVWSE 162
                        +R+EQWAGGLL+YQSR ++ L VWS+
Sbjct:   587 FTNNQIWVTRYNRSEQWAGGLLMYQSRGEDTLQVWSD 623
GO:0005507 "copper ion binding" evidence=IEA;ISS
GO:0005576 "extracellular region" evidence=ISM
GO:0008131 "primary amine oxidase activity" evidence=IEA
GO:0009308 "amine metabolic process" evidence=IEA
GO:0048038 "quinone binding" evidence=IEA
GO:0055114 "oxidation-reduction process" evidence=IEA
TAIR|locus:2026267 CuAO1 "COPPER AMINE OXIDASE1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2139054 AT4G12280 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2139069 AT4G12290 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2028666 AT1G31670 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q43077 Q43077 "Primary amine oxidase" [Pisum sativum (taxid:3888)] Back     alignment and assigned GO terms
TAIR|locus:2129520 AO1 "amine oxidase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2028636 AT1G31690 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2028606 AT1G31710 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|P46883 tynA "TynA" [Escherichia coli K-12 (taxid:83333)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
estExt_Genewise1_v1.C_1270093
hypothetical protein (360 aa)
(Populus trichocarpa)
Predicted Functional Partners:
gw1.X.5935.1
hypothetical protein (258 aa)
  •     0.506
fgenesh4_pg.C_scaffold_16093000001
annotation not avaliable (147 aa)
  •     0.506
eugene3.10540001
hypothetical protein (265 aa)
  •     0.506

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query219
pfam01179411 pfam01179, Cu_amine_oxid, Copper amine oxidase, en 2e-46
PLN02566646 PLN02566, PLN02566, amine oxidase (copper-containi 3e-40
PRK11504647 PRK11504, tynA, tyramine oxidase; Provisional 5e-30
COG3733654 COG3733, TynA, Cu2+-containing amine oxidase [Seco 1e-28
PRK14696721 PRK14696, tynA, tyramine oxidase; Provisional 5e-17
>gnl|CDD|216347 pfam01179, Cu_amine_oxid, Copper amine oxidase, enzyme domain Back     alignment and domain information 
 Score =  157 bits (400), Expect = 2e-46
 Identities = 72/253 (28%), Positives = 98/253 (38%), Gaps = 63/253 (24%)

Query: 2   GNYDCIFDWELQTDGLILIKNLYQVSKPGYMS------------GPLVCENVIGVVHDHF 49
           GNYD IFDW    DG I ++    V   G +S            G LV   V+   H H 
Sbjct: 159 GNYDYIFDWIFYQDGSIELE----VRATGILSTAAIDPGEDAPYGTLVAPGVLAPNHQHL 214

Query: 50  ITLHLDMDIDGANNSFVEVHLEKQETSPGESPRKSYLKIEQC-----------LNLYDPS 98
               LD DIDG NNS VEV           +P  +   +E+             +   P 
Sbjct: 215 FNFRLDPDIDGTNNSVVEVDAVPVPMPWSPNPYGNAFTLERTVLETEKEAARDFDPSTPR 274

Query: 99  EFHVINPSRRSRLGNPSGHKAVPGGNAATLLRNTA---------------TPSDRNEQWA 143
            + ++NP++++ +G P G+K  PG +   L    +               TP   +E +A
Sbjct: 275 TWKIVNPNKKNPVGKPVGYKLQPGSSPPLLAPPDSYVAKRAAFARHHLWVTPYKDSELYA 334

Query: 144 GGLLVYQSREDEALAVWSE-----------MW-NF---------NFPVMPTVPSSFDLEP 182
            G    QS  D+ L  W             +W  F         +FPVMP     F L P
Sbjct: 335 AGDYTNQSPGDDGLPDWIADNESIENEDIVLWHTFGLTHVPRPEDFPVMPVESVGFLLRP 394

Query: 183 VNFFHRNPTLRLP 195
           VNFF  NP L +P
Sbjct: 395 VNFFDENPALDVP 407

Copper amine oxidases are a ubiquitous and novel group of quinoenzymes that catalyze the oxidative deamination of primary amines to the corresponding aldehydes, with concomitant reduction of molecular oxygen to hydrogen peroxide. The enzymes are dimers of identical 70-90 kDa subunits, each of which contains a single copper ion and a covalently bound cofactor formed by the post-translational modification of a tyrosine side chain to 2,4,5-trihydroxyphenylalanine quinone (TPQ). This family corresponds to the catalytic domain of the enzyme. Length = 411
>gnl|CDD|215306 PLN02566, PLN02566, amine oxidase (copper-containing) Back     alignment and domain information
>gnl|CDD|236919 PRK11504, tynA, tyramine oxidase; Provisional Back     alignment and domain information
>gnl|CDD|226256 COG3733, TynA, Cu2+-containing amine oxidase [Secondary metabolites biosynthesis, transport, and catabolism] Back     alignment and domain information
>gnl|CDD|184793 PRK14696, tynA, tyramine oxidase; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 219
PRK11504647 tynA tyramine oxidase; Provisional 100.0
PF01179413 Cu_amine_oxid: Copper amine oxidase, enzyme domain 100.0
COG3733654 TynA Cu2+-containing amine oxidase [Secondary meta 100.0
PLN02566646 amine oxidase (copper-containing) 100.0
PRK14696721 tynA tyramine oxidase; Provisional 100.0
KOG1186670 consensus Copper amine oxidase [Secondary metaboli 100.0
>PRK11504 tynA tyramine oxidase; Provisional Back     alignment and domain information 
Probab=100.00  E-value=1.6e-64  Score=488.06  Aligned_cols=201  Identities=33%  Similarity=0.547  Sum_probs=182.4

Q ss_pred             CcccceeeeEEEccCCceEEE-------Eeecc-CCCCCCCCCccccCcccccceeEEeeeeecccCCCCCeEEEEEeEE
Q 046620            1 MGNYDCIFDWELQTDGLILIK-------NLYQV-SKPGYMSGPLVCENVIGVVHDHFITLHLDMDIDGANNSFVEVHLEK   72 (219)
Q Consensus         1 VgNYDY~f~~~F~~DGtIe~e-------~t~~~-~~~~~~yG~~V~p~v~g~~HqH~f~~RiD~dIdG~~Nsv~~~~~~~   72 (219)
                      ||||||||+|+|||||+||+|       +++++ ++++.+||++|+|+++|++|||+|||||||||||.+|||+++++++
T Consensus       384 VgNYdYi~~w~F~qdG~Ie~eV~aTGil~t~~~~~~~~~~yGt~V~~~v~a~~HqH~f~~RlD~dIDG~~Nsv~~~d~~~  463 (647)
T PRK11504        384 VGNYDYGFYWYFYQDGTIEFEVKLTGIVFTAAVPPGETPPYGTLVAPGLYAPNHQHFFNARLDMDVDGPGNSVYEVNSVP  463 (647)
T ss_pred             cccccEEEEEEEecCceEEEEEEeeeEEEeeeeCCCccCCCcceecCCcccccceEEEEEEEcccccCCCceEEEEEeEe
Confidence            799999999999999999999       44444 3556789999999999999999999999999999999999999999


Q ss_pred             ecCCCCCCCCcceEEEEe-----------ecCCCCCcEEEEecCCCCCCCCCCeeEEEecCCCcccCCCCC---------
Q 046620           73 QETSPGESPRKSYLKIEQ-----------CLNLYDPSEFHVINPSRRSRLGNPSGHKAVPGGNAATLLRNT---------  132 (219)
Q Consensus        73 ~~~~~~~~p~~~~~~~e~-----------~~~~~~~r~~~vvN~~~~N~~G~p~gYkl~p~~~~~~l~~~~---------  132 (219)
                      ++.+ ++||+++.++.++           +++..++|+|+|+|++++|++|+|+||||+|++++.+|+.++         
T Consensus       464 ~p~~-~~np~g~~~~~~~t~l~tE~~a~~~~~~~~~R~~~ivN~~~~N~~G~pvgYkl~p~~~~~~l~~~~s~~~~ra~f  542 (647)
T PRK11504        464 VPMG-PDNPHGNAFYTRETLLETESEAARDADPSTGRYWKIVNPNKKNRLGEPVAYKLVPGGNPPLLADPGSSIRQRAGF  542 (647)
T ss_pred             cCCC-CCCccceEEEEEEEEecchhhhhhccCCCCccEEEEECCCCcCCCCCeeeEEEccCCCccccCCCCchhhhcchh
Confidence            9987 5899888876655           566778999999999999999999999999999988888876         


Q ss_pred             ------CCcCCCCCCCCCCCCCCCCCCCchHhhHhh-----------hhc----------CCCCCcccccceeeEeecCC
Q 046620          133 ------ATPSDRNEQWAGGLLVYQSREDEALAVWSE-----------MWN----------FNFPVMPTVPSSFDLEPVNF  185 (219)
Q Consensus       133 ------VT~y~d~E~~asg~y~~qs~~~~~l~~Wv~-----------vwh----------ED~Pvmp~~~~gf~L~P~nF  185 (219)
                            ||+|+|+|+||||+|++|+.++++|+.|++           |||          |||||||++.+||.|||+||
T Consensus       543 a~~~lwVT~y~d~E~~aag~y~~Qs~~~~gl~~~~~~~~~i~~~DiVlW~t~G~~HvPr~ED~PvMP~~~~gf~L~P~nF  622 (647)
T PRK11504        543 ATHHLWVTPYDPDERYAAGDYPNQSAGGDGLPAYIAADRSIENTDVVLWYTFGITHVPRPEDWPVMPVDYAGFKLKPVGF  622 (647)
T ss_pred             hhCcEEEeccCCCccccCCCCcccCCCCCCHHHHhcCCCccccCceEEEEecCcccCCChhhCCCCccceEEEEEEcCCC
Confidence                  999999999999999999998888888886           564          99999999999999999999


Q ss_pred             CCCCCccCCCCCccccc
Q 046620          186 FHRNPTLRLPADCFAIS  202 (219)
Q Consensus       186 Fd~nPs~d~p~~~~~~~  202 (219)
                      |++||+||||++.++.+
T Consensus       623 F~~NPaldvp~s~~~~~  639 (647)
T PRK11504        623 FDRNPALDLPPEPPAAC  639 (647)
T ss_pred             CCCCccccCCCcccccc
Confidence            99999999999966433

>PF01179 Cu_amine_oxid: Copper amine oxidase, enzyme domain; InterPro: IPR015798 Amine oxidases (AO) are enzymes that catalyse the oxidation of a wide range of biogenic amines including many neurotransmitters, histamine and xenobiotic amines Back     alignment and domain information
>COG3733 TynA Cu2+-containing amine oxidase [Secondary metabolites biosynthesis, transport, and catabolism] Back     alignment and domain information
>PLN02566 amine oxidase (copper-containing) Back     alignment and domain information
>PRK14696 tynA tyramine oxidase; Provisional Back     alignment and domain information
>KOG1186 consensus Copper amine oxidase [Secondary metabolites biosynthesis, transport and catabolism] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query219
1ksi_A642 Crystal Structure Of A Eukaryotic (Pea Seedling) Co 2e-29
1w2z_A649 Psao And Xenon Length = 649 2e-29
2wgq_A727 Zinc Substituted E Coli Copper Amine Oxidase, A Mod 4e-13
1oac_A727 Crystal Structure Of A Quinoenzyme: Copper Amine Ox 4e-12
1qak_A722 The Active Site Base Controls Cofactor Reactivity I 4e-12
1jrq_A727 X-Ray Structure Analysis Of The Role Of The Conserv 4e-12
1qaf_A721 The Active Site Base Controls Cofactor Reactivity I 4e-12
1qal_A721 The Active Site Base Controls Cofactor Reactivity I 4e-12
1ivu_A638 Crystal Structure Of Copper Amine Oxidase From Arth 4e-07
3pgb_A797 Crystal Structure Of Aspergillus Nidulans Amine Oxi 1e-06
2cwt_A638 Catalytic Base Deletion In Copper Amine Oxidase Fro 4e-06
1ivv_A638 Crystal Structure Of Copper Amine Oxidase From Arth 4e-06
2yx9_A638 Crystal Structure Of D298k Copper Amine Oxidase Fro 4e-06
1sih_A646 Agao In Covalent Complex With The Inhibitor Moba (" 4e-06
2e2u_A628 Substrate Schiff-Base Analogue Of Copper Amine Oxid 4e-06
1ui7_A638 Site-Directed Mutagenesis Of His433 Involved In Bin 4e-06
1ui8_A638 Site-directed Mutagenesis Of His592 Involved In Bin 6e-06
3loy_A633 Crystal Structure Of A Copper-Containing Benzylamin 8e-05
>pdb|1KSI|A Chain A, Crystal Structure Of A Eukaryotic (Pea Seedling) Copper-Containing Amine Oxidase At 2.2a Resolution Length = 642 Back     alignment and structure 
Iteration: 1

 Score =  125 bits (313), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 82/254 (32%), Positives = 117/254 (46%), Gaps = 63/254 (24%)
Query: 1   MGNYDCIFDWELQTDGLIL---------------IKNLYQVSKPGYMSGPLVCENVIGVV 45
           +GN D + DWE +  G I                IK+  ++ +   + G LV  N IG+ 
Sbjct: 379 VGNXDNVIDWEFKASGSIKPSIALSGILEIKGTNIKHKDEIKED--LHGKLVSANSIGIY 436
Query: 46  HDHFITLHLDMDIDGANNSFVEVHLEKQETSPGESPRKSYLKIEQCLNLYD--------- 96
           HDHF   +LD DIDG +NSF +  L+      G S RKSY   E      +         
Sbjct: 437 HDHFYIYYLDFDIDGTHNSFEKTSLKTVRIKDGSSKRKSYWTTETQTAKTESDAKITIGL 496
Query: 97  -PSEFHVINPSRRSRLGNPSGHKAVPGGNAATLLRNTATPS---------------DRNE 140
            P+E  V+NP+ ++ +GN  G++ +P   A  LL     P                +R E
Sbjct: 497 APAELVVVNPNIKTAVGNEVGYRLIPAIPAHPLLTEDDYPQIRGAFTNYNVWVTAYNRTE 556
Query: 141 QWAGGLLVYQSREDEALAVWSE-----------MWNF----------NFPVMPTVPSSFD 179
           +WAGGL V  SR D+ LAVW++           MW+           +FP+MP + +SF+
Sbjct: 557 KWAGGLYVDHSRGDDTLAVWTKQNREIVNKDIVMWHVVGIHHVPAQEDFPIMPLLSTSFE 616
Query: 180 LEPVNFFHRNPTLR 193
           L P NFF RNP L+
Sbjct: 617 LRPTNFFERNPVLK 630
>pdb|1W2Z|A Chain A, Psao And Xenon Length = 649 Back     alignment and structure
>pdb|2WGQ|A Chain A, Zinc Substituted E Coli Copper Amine Oxidase, A Model For The Precursor For 2,4,5-Trihydroxyphenylalaninequinone Formation Length = 727 Back     alignment and structure
>pdb|1OAC|A Chain A, Crystal Structure Of A Quinoenzyme: Copper Amine Oxidase Of Escherichia Coli At 2 Angstroems Resolution Length = 727 Back     alignment and structure
>pdb|1QAK|A Chain A, The Active Site Base Controls Cofactor Reactivity In Escherichia Coli Amine Oxidase : X-ray Crystallographic Studies With Mutational Variants Length = 722 Back     alignment and structure
>pdb|1JRQ|A Chain A, X-Ray Structure Analysis Of The Role Of The Conserved Tyrosine-369 In Active Site Of E. Coli Amine Oxidase Length = 727 Back     alignment and structure
>pdb|1QAF|A Chain A, The Active Site Base Controls Cofactor Reactivity In Escherichia Coli Amine Oxidase : X-Ray Crystallographic Studies With Mutational Variants Length = 721 Back     alignment and structure
>pdb|1QAL|A Chain A, The Active Site Base Controls Cofactor Reactivity In Escherichia Coli Amine Oxidase : X-Ray Crystallographic Studies With Mutational Variants Length = 721 Back     alignment and structure
>pdb|1IVU|A Chain A, Crystal Structure Of Copper Amine Oxidase From Arthrobacter Globiformis: Initial Intermediate In Topaquinone Biogenesis Length = 638 Back     alignment and structure
>pdb|3PGB|A Chain A, Crystal Structure Of Aspergillus Nidulans Amine Oxidase Length = 797 Back     alignment and structure
>pdb|2CWT|A Chain A, Catalytic Base Deletion In Copper Amine Oxidase From Arthrobacter Globiformis Length = 638 Back     alignment and structure
>pdb|1IVV|A Chain A, Crystal Structure Of Copper Amine Oxidase From Arthrobacter Globiformis: Early Intermediate In Topaquinone Biogenesis Length = 638 Back     alignment and structure
>pdb|2YX9|A Chain A, Crystal Structure Of D298k Copper Amine Oxidase From Arthrobacter Globiformis Length = 638 Back     alignment and structure
>pdb|1SIH|A Chain A, Agao In Covalent Complex With The Inhibitor Moba ("4-(4- Methylphenoxy)-2-Butyn-1-Amine") Length = 646 Back     alignment and structure
>pdb|2E2U|A Chain A, Substrate Schiff-Base Analogue Of Copper Amine Oxidase From Arthrobacter Globiformis Formed With 4-Hydroxybenzylhydrazine Length = 628 Back     alignment and structure
>pdb|1UI7|A Chain A, Site-Directed Mutagenesis Of His433 Involved In Binding Of Copper Ion In Arthrobacter Globiformis Amine Oxidase Length = 638 Back     alignment and structure
>pdb|1UI8|A Chain A, Site-directed Mutagenesis Of His592 Involved In Binding Of Copper Ion In Arthrobacter Globiformis Amine Oxidase Length = 638 Back     alignment and structure
>pdb|3LOY|A Chain A, Crystal Structure Of A Copper-Containing Benzylamine Oxidase From Hansenula Polymorpha Length = 633 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query219
3loy_A633 Copper amine oxidase; TPQ, oxidoreductase; HET: TP 4e-32
1w6g_A646 Phenylethylamine oxidase; copper containing, metal 7e-32
1spu_A727 Copper amine oxidase; oxidoreductase, TPQ, peripla 2e-31
1ksi_A642 Copper amine oxidase; PEA seedling, oxidoreductase 4e-31
3pgb_A797 Putative uncharacterized protein; oxidoreductase, 5e-30
3sxx_A692 Peroxisomal primary amine oxidase; oxidoreductase, 1e-29
3hi7_A731 Amiloride-sensitive amine oxidase; oxidoreductase, 1e-27
1w7c_A747 Lysyl oxidase; AMNE oxidase, copper, oxidoreductas 6e-27
1tu5_A746 Copper amine oxidase, liver isozyme; oxidoreductas 2e-26
>1spu_A Copper amine oxidase; oxidoreductase, TPQ, periplasmic, signal; HET: PAQ; 2.00A {Escherichia coli} SCOP: b.30.2.1 d.17.2.1 d.17.2.1 d.82.1.1 PDB: 1d6y_A* 1d6u_A* 1d6z_A* 2wgq_A 1oac_A* 1dyu_A* 2w0q_A* 2wo0_A* 2wof_A* 2woh_A* 1lvn_A* 1jrq_A* 1qak_A* 1qaf_A* 1qal_A* Length = 727 Back     alignment and structure
>3sxx_A Peroxisomal primary amine oxidase; oxidoreductase, peroxisome; HET: GOL; 1.27A {Pichia angusta} PDB: 3sx1_A* 3t0u_A 3n9h_A* 3nbj_A* 3nbb_A* 2oqe_C* 2oov_C* 2oqe_A* 2oov_A* 1ekm_A 1a2v_A* Length = 692 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query219
3sxx_A692 Peroxisomal primary amine oxidase; oxidoreductase, 100.0
3loy_A633 Copper amine oxidase; TPQ, oxidoreductase; HET: TP 100.0
1ksi_A642 Copper amine oxidase; PEA seedling, oxidoreductase 100.0
1w6g_A646 Phenylethylamine oxidase; copper containing, metal 100.0
3pgb_A797 Putative uncharacterized protein; oxidoreductase, 100.0
3hi7_A731 Amiloride-sensitive amine oxidase; oxidoreductase, 100.0
1tu5_A746 Copper amine oxidase, liver isozyme; oxidoreductas 100.0
1spu_A727 Copper amine oxidase; oxidoreductase, TPQ, peripla 100.0
1w7c_A747 Lysyl oxidase; AMNE oxidase, copper, oxidoreductas 100.0
>3sxx_A Peroxisomal primary amine oxidase; oxidoreductase, peroxisome; HET: GOL; 1.27A {Pichia angusta} PDB: 3sx1_A* 3t0u_A 3n9h_A* 3nbj_A* 3nbb_A* 2oqe_C* 2oov_C* 2oqe_A* 2oov_A* 1ekm_A 1a2v_A* Back     alignment and structure
Probab=100.00  E-value=1.6e-63  Score=482.53  Aligned_cols=206  Identities=23%  Similarity=0.347  Sum_probs=184.3

Q ss_pred             CcccceeeeEEEccCCceEEE--Eeecc-----C-CC-CCCCCCccccCcccccceeEEeeeeecccCCCCCeEEEEEeE
Q 046620            1 MGNYDCIFDWELQTDGLILIK--NLYQV-----S-KP-GYMSGPLVCENVIGVVHDHFITLHLDMDIDGANNSFVEVHLE   71 (219)
Q Consensus         1 VgNYDY~f~~~F~~DGtIe~e--~t~~~-----~-~~-~~~yG~~V~p~v~g~~HqH~f~~RiD~dIdG~~Nsv~~~~~~   71 (219)
                      ||||||||+|+|||||+||+|  .|+++     . ++ +.+||++|+|+++|++|||+|||||||||||.+|||+++|++
T Consensus       402 VgNYDYif~w~F~qdG~Ie~ev~aTGil~t~~~~~~~~~~~yGt~V~~~v~a~~HqH~f~~RlD~dIdG~~Nsv~~~d~~  481 (692)
T 3sxx_A          402 AANYEYCLYWVFMQDGAIRLDIRLTGILNTYILGDDEEAGPWGTRVYPNVNAHNHQHLFSLRIDPRIDGDGNSAAACDAK  481 (692)
T ss_dssp             ETTEEEEEEEEECTTSCEEEEEEEEECCCCEECCTTCCCTTTEEEEETTEEEECEEEEEEEEEEECTTSSCBEEEEEEEE
T ss_pred             ccceeEEEEEEEecCCeEEEEEEEEEEEEeeeeCCCcccCCCcceecCCccccceeEEEEEEeccccCCCCceEEEEEeE
Confidence            699999999999999999999  55554     2 34 479999999999999999999999999999999999999999


Q ss_pred             EecCC--CCCCCCcceEEEEe-----------ecCCCCCcEEEEecCCCCCCC-CCCeeEEEecCCCcccCCCCC-----
Q 046620           72 KQETS--PGESPRKSYLKIEQ-----------CLNLYDPSEFHVINPSRRSRL-GNPSGHKAVPGGNAATLLRNT-----  132 (219)
Q Consensus        72 ~~~~~--~~~~p~~~~~~~e~-----------~~~~~~~r~~~vvN~~~~N~~-G~p~gYkl~p~~~~~~l~~~~-----  132 (219)
                      +++..  .+.||+++.++.++           +++..++|+|+|+|++++|++ |+|+||||+|++++.+|+.++     
T Consensus       482 ~~~~~~~~~~np~g~~~~~~~t~~~tE~ea~~~~~~~~~R~~~i~N~~~~N~~sG~pvgYkL~p~~~~~ll~~~~s~~~~  561 (692)
T 3sxx_A          482 SSPYPLGSPENMYGNAFYSEKTTFKTVKDSLTNYESATGRSWDIFNPNKVNPYSGKPPSYKLVSTQCPPLLAKEGSLVAK  561 (692)
T ss_dssp             ECSSCTTBTTBTTSCCEEEEEEECCBHHHHCBCCCGGGTCEEEEECTTCCCTTTCSCCEEEEECCCCCCCCSCTTSHHHH
T ss_pred             EccCCCCCCCCCCcceeEEEEEEccchhhhhhccCCCCCcEEEEeCCCCcCCCCCccceEEEecCCCCcccCCCCchhhh
Confidence            99875  34688888887665           455567999999999999999 999999999998887777666     


Q ss_pred             ----------CCcCCCCCCCCCCCCCCCCCCC--chHhhHh-h-----------hhc----------CCCCCccccccee
Q 046620          133 ----------ATPSDRNEQWAGGLLVYQSRED--EALAVWS-E-----------MWN----------FNFPVMPTVPSSF  178 (219)
Q Consensus       133 ----------VT~y~d~E~~asg~y~~qs~~~--~~l~~Wv-~-----------vwh----------ED~Pvmp~~~~gf  178 (219)
                                ||+|+|+|+||||+|++|+.++  +||..|+ +           +||          |||||||++++||
T Consensus       562 ra~fa~~~lwVT~y~d~E~~aag~y~nQs~g~p~~gl~~w~~~~~e~I~n~DiV~W~t~G~~HiPr~ED~PvMP~~~~gf  641 (692)
T 3sxx_A          562 RAPWASHSVNVVPYKDNRLYPSGDHVPQWSGDGVRGMREWIGDGSENIDNTDILFFHTFGITHFPAPEDFPLMPAEPITL  641 (692)
T ss_dssp             HCGGGGSSEEEEECCTTCCCTTCSSCTTCCSCSSCHHHHHHTTSCSBCSSBCEEEEEEEEEEECCCGGGSSSCCCEEEEE
T ss_pred             hchhcccceEEecCCCCccCCCCCCccCCCCCCCCChHHHhhcCCceeecCceEEEEecCcccCCchhcCCCCcceEEEE
Confidence                      9999999999999999999876  8999999 4           674          9999999999999


Q ss_pred             eEeecCCCCCCCccCCCCCcccccccee
Q 046620          179 DLEPVNFFHRNPTLRLPADCFAISFHWL  206 (219)
Q Consensus       179 ~L~P~nFFd~nPs~d~p~~~~~~~~~~~  206 (219)
                      +|||+|||++||+||+|++.+..+++++
T Consensus       642 ~LrP~nFFd~NPaldvp~~~~~~~~~v~  669 (692)
T 3sxx_A          642 MLRPRHFFTENPGLDIQPSYAMTTSEAK  669 (692)
T ss_dssp             EEEEESSSSSCTTTTSCCSEEECHHHHH
T ss_pred             EEECCCcCCCCCcccCCCcccccChhhh
Confidence            9999999999999999999777776654
>1spu_A Copper amine oxidase; oxidoreductase, TPQ, periplasmic, signal; HET: PAQ; 2.00A {Escherichia coli} SCOP: b.30.2.1 d.17.2.1 d.17.2.1 d.82.1.1 PDB: 1d6y_A* 1d6u_A* 1d6z_A* 2wgq_A 1oac_A* 1dyu_A* 2w0q_A* 2wo0_A* 2wof_A* 2woh_A* 1lvn_A* 1jrq_A* 1qak_A* 1qaf_A* 1qal_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 219
d1w6ga1417 b.30.2.1 (A:212-628) Copper amine oxidase, domain 3e-39
d1w2za1441 b.30.2.1 (A:207-647) Copper amine oxidase, domain 7e-39
d2oqea1436 b.30.2.1 (A:237-672) Copper amine oxidase, domain 4e-34
d1d6za1424 b.30.2.1 (A:301-724) Copper amine oxidase, domain 2e-33
d1w7ca1460 b.30.2.1 (A:316-775) Lysyl oxidase PplO, domain 3 6e-33
>d1w6ga1 b.30.2.1 (A:212-628) Copper amine oxidase, domain 3 {Arthrobacter globiformis [TaxId: 1665]} Length = 417 Back     information, alignment and structure

class: All beta proteins
fold: Supersandwich
superfamily: Amine oxidase catalytic domain
family: Amine oxidase catalytic domain
domain: Copper amine oxidase, domain 3
species: Arthrobacter globiformis [TaxId: 1665]

 Score =  137 bits (346), Expect = 3e-39
 Identities = 55/249 (22%), Positives = 84/249 (33%), Gaps = 53/249 (21%)

Query: 1   MGNYDCIFDWELQTDGLI-------LIKNLYQVSKPGYMSGPLVCENVIGVVHDHFITLH 53
           +GNYD  F W L  DG I        +       + G  +   +   +    H H  +  
Sbjct: 168 IGNYDYGFYWYLYLDGTIEFEAKATGVVFTSAFPEGGSDNISQLAPGLGAPFHQHIFSAR 227

Query: 54  LDMDIDGANNSFVEVHLEKQETSPGESP------RKSYLKIEQC----LNLYDPSEFHVI 103
           LDM IDG  N   E  + +Q   PG         +++ L  E       +      + + 
Sbjct: 228 LDMAIDGFTNRVEEEDVVRQTMGPGNERGNAFSRKRTVLTRESEAVREADARTGRTWIIS 287

Query: 104 NPSRRSRLGNPSGHKAVPGGNAATLLRNTA---------------TPSDRNEQWAGGLLV 148
           NP  ++RL  P G+K         L    +               T    +E++  G  V
Sbjct: 288 NPESKNRLNEPVGYKLHAHNQPTLLADPGSSIARRAAFATKDLWVTRYADDERYPTGDFV 347

Query: 149 YQSREDEALAVWSE-----------MW-NF---------NFPVMPTVPSSFDLEPVNFFH 187
            Q      L  +             +W  F         ++P+MP     F L P  FF 
Sbjct: 348 NQHSGGAGLPSYIAQDRDIDGQDIVVWHTFGLTHFPRVEDWPIMPVDTVGFKLRPEGFFD 407

Query: 188 RNPTLRLPA 196
           R+P L +PA
Sbjct: 408 RSPVLDVPA 416
>d1w2za1 b.30.2.1 (A:207-647) Copper amine oxidase, domain 3 {Pea seedling (Pisum sativum) [TaxId: 3888]} Length = 441 Back     information, alignment and structure
>d2oqea1 b.30.2.1 (A:237-672) Copper amine oxidase, domain 3 {Yeast (Hansenula polymorpha) [TaxId: 4905]} Length = 436 Back     information, alignment and structure
>d1d6za1 b.30.2.1 (A:301-724) Copper amine oxidase, domain 3 {Escherichia coli [TaxId: 562]} Length = 424 Back     information, alignment and structure
>d1w7ca1 b.30.2.1 (A:316-775) Lysyl oxidase PplO, domain 3 {Yeast (Pichia pastoris) [TaxId: 4922]} Length = 460 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query219
d1w6ga1417 Copper amine oxidase, domain 3 {Arthrobacter globi 100.0
d1w2za1441 Copper amine oxidase, domain 3 {Pea seedling (Pisu 100.0
d2oqea1436 Copper amine oxidase, domain 3 {Yeast (Hansenula p 100.0
d1w7ca1460 Lysyl oxidase PplO, domain 3 {Yeast (Pichia pastor 100.0
d1d6za1424 Copper amine oxidase, domain 3 {Escherichia coli [ 100.0
>d1w6ga1 b.30.2.1 (A:212-628) Copper amine oxidase, domain 3 {Arthrobacter globiformis [TaxId: 1665]} Back     information, alignment and structure
class: All beta proteins
fold: Supersandwich
superfamily: Amine oxidase catalytic domain
family: Amine oxidase catalytic domain
domain: Copper amine oxidase, domain 3
species: Arthrobacter globiformis [TaxId: 1665]

Probab=100.00  E-value=5.2e-65  Score=469.70  Aligned_cols=196  Identities=27%  Similarity=0.447  Sum_probs=173.8

Q ss_pred             CcccceeeeEEEccCCceEEE--Eeecc-----CCCCCCCCCccccCcccccceeEEeeeeecccCCCCCeEEEEEeEEe
Q 046620            1 MGNYDCIFDWELQTDGLILIK--NLYQV-----SKPGYMSGPLVCENVIGVVHDHFITLHLDMDIDGANNSFVEVHLEKQ   73 (219)
Q Consensus         1 VgNYDY~f~~~F~~DGtIe~e--~t~~~-----~~~~~~yG~~V~p~v~g~~HqH~f~~RiD~dIdG~~Nsv~~~~~~~~   73 (219)
                      ||||||||+|+|||||+||++  .|+++     ..++.+||++|+|+++|++|||+|||||||||||++|||++++++++
T Consensus       168 vgNYdYi~~~~F~~dGsIe~~v~aTG~l~~~~~~~~~~~~g~~v~~~~~g~~H~H~f~~RlD~dIdG~~Nsv~~~~~~~~  247 (417)
T d1w6ga1         168 IGNYDYGFYWYLYLDGTIEFEAKATGVVFTSAFPEGGSDNISQLAPGLGAPFHQHIFSARLDMAIDGFTNRVEEEDVVRQ  247 (417)
T ss_dssp             ETTEEEEEEEEEETTSCEEEEEEEEECCCCEECCTTCCSSEEEEETTEEEECEEEEEEEEEEECTTSSCBEEEEEEEEEC
T ss_pred             eeeeeEEEEEEEecCcEEEEEEEEEEEEEEeccCCCCCCcccEeccCcccccccceeEEEeccccCCCCceEEEEeeEEe
Confidence            699999999999999999999  55544     34567999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCCCcceEEEEe-----------ecCCCCCcEEEEecCCCCCCCCCCeeEEEecCCCcccCCCCC----------
Q 046620           74 ETSPGESPRKSYLKIEQ-----------CLNLYDPSEFHVINPSRRSRLGNPSGHKAVPGGNAATLLRNT----------  132 (219)
Q Consensus        74 ~~~~~~~p~~~~~~~e~-----------~~~~~~~r~~~vvN~~~~N~~G~p~gYkl~p~~~~~~l~~~~----------  132 (219)
                      +++. .++.++.+..++           +++..++|+|+|+|++++|++|+|+||||+|++++.+++.++          
T Consensus       248 ~~~~-~~~~~~~~~~~~t~~~~E~~a~~~~~~~~~r~~~vvN~~k~N~~G~~~gYkl~p~~~~~~l~~~~s~~~~ra~fa  326 (417)
T d1w6ga1         248 TMGP-GNERGNAFSRKRTVLTRESEAVREADARTGRTWIISNPESKNRLNEPVGYKLHAHNQPTLLADPGSSIARRAAFA  326 (417)
T ss_dssp             CSBT-TBTTSCCEEEEEEEECBGGGCEECCCGGGTCEEEEEEEEEECTTSCEEEEEEEECCCCCCCSCTTSHHHHHTGGG
T ss_pred             cCCC-ccccccEEEEEEEEEEehhhhhhcccccCccEEEEECCCCcCCCCCcceEEEccCCCCcccCCCCchhhhcchhh
Confidence            9876 456666555444           345557999999999999999999999999999888888776          


Q ss_pred             -----CCcCCCCCCCCCCCCCCCCCCCchHhhHhh-----------hh------c----CCCCCcccccceeeEeecCCC
Q 046620          133 -----ATPSDRNEQWAGGLLVYQSREDEALAVWSE-----------MW------N----FNFPVMPTVPSSFDLEPVNFF  186 (219)
Q Consensus       133 -----VT~y~d~E~~asg~y~~qs~~~~~l~~Wv~-----------vw------h----ED~Pvmp~~~~gf~L~P~nFF  186 (219)
                           ||+|+|+|+||||+|++|+.++++|+.|+.           +|      |    |||||||++.+||+|+|+|||
T Consensus       327 ~~~lwVT~y~d~E~~aag~y~nq~~~~~~l~~~~~~~e~I~~~DiV~W~t~G~~H~Pr~ED~Pvmp~~~~gf~L~P~nFF  406 (417)
T d1w6ga1         327 TKDLWVTRYADDERYPTGDFVNQHSGGAGLPSYIAQDRDIDGQDIVVWHTFGLTHFPRVEDWPIMPVDTVGFKLRPEGFF  406 (417)
T ss_dssp             GSSEEEEECCTTCCCTTCSCCBTCCSSSSHHHHHTTCCBCTTBCEEEEEEEEEEECCCGGGSSSEEEEEEEEEEEESSCS
T ss_pred             cccEEEecCCCccccCCCCCccCCCCCCChhHhhcCCCcccCCcEEEEEeCCcccCCChhhCCCCcceeEEEEEECCCCC
Confidence                 999999999999999999877777777775           55      4    999999999999999999999


Q ss_pred             CCCCccCCCCC
Q 046620          187 HRNPTLRLPAD  197 (219)
Q Consensus       187 d~nPs~d~p~~  197 (219)
                      ++||+||||+|
T Consensus       407 ~~nPald~p~s  417 (417)
T d1w6ga1         407 DRSPVLDVPAN  417 (417)
T ss_dssp             SSCTTTTCCCC
T ss_pred             CCCCccCCCCC
Confidence            99999999986
>d1w2za1 b.30.2.1 (A:207-647) Copper amine oxidase, domain 3 {Pea seedling (Pisum sativum) [TaxId: 3888]} Back     information, alignment and structure
>d2oqea1 b.30.2.1 (A:237-672) Copper amine oxidase, domain 3 {Yeast (Hansenula polymorpha) [TaxId: 4905]} Back     information, alignment and structure
>d1w7ca1 b.30.2.1 (A:316-775) Lysyl oxidase PplO, domain 3 {Yeast (Pichia pastoris) [TaxId: 4922]} Back     information, alignment and structure
>d1d6za1 b.30.2.1 (A:301-724) Copper amine oxidase, domain 3 {Escherichia coli [TaxId: 562]} Back     information, alignment and structure