Citrus Sinensis ID: 046635

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------13
Protein Sequence
MVKFGVELAGMDLRRATDFLAQGYFNPFVGTKVLRVTNSNIYVFAYSLEFVENGLHSCRLDNEMQMDSREYLSRRRAILQKEGFHITGLISNQMDALIGQSLGKRVFKIPNPLYYSFDHQIESTKFAS
Secondary Structure (PSIPRED)
cccccHHcccccHHHHHHHHHccEEEEEEcccccEEEcHHHHcccHHHHHHHHccccccccccccccHHHcHHHHHHHHHHcccEEEEEcccccccccccccccEEEEcccccEEEEccccccccccc
Secondary Structure Prediction (SSPRO)
cccEEEEEccccHHHHHHHHHccccccccccHEHHHHcHcHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHcccEEEEEccccHHHHcccccccEEEEcccccEEEEHcccccccccc
Coil and Loop (DISEMBL)
MVKFGVELAGMDLRRATDFLaqgyfnpfvgTKVLRVTNSNIYVFAYSLEFVENglhscrldnemqMDSREYLSRRRAILQKEGFHITGLISNQMDALIGqslgkrvfkipnplyysfdhqiestkfas
Flexible Loop (DISEMBL)
MVKFGVELAGMDLRRATDFLAQGYFNPFVGTKVLRVTNSNIYVFAYSLEFVENGLHSCRLDNEMQMDSREYLSRRRAILQKEGFHITGLISNQMDALIGQSLGKRVFKIPNPlyysfdhqiestkfas
Low Complexity Region (SEG)
MVKFGVELAGMDLRRATDFLAQGYFNPFVGTKVLRVTNSNIYVFAYSLEFVENGLHSCRLDNEMQMDSREYLSRRRAILQKEGFHITGLISNQMDALIGQSLGKRVFKIPNPLYYSFDHQIESTKFAS
Disordered region (IsUnstruct)
***FGVELAGMDLRRATDFLAQGYFNPFVGTKVLRVTNSNIYVFAYSLEFVENGLHSCRLDNEMQM*SREYLSRRRAILQKEGFHITGLISNQMDALIGQSLGKRVFKIPNPLYYSFDHQ********
Disordered Region (DISOPRED)
**K*G**LAGMDLRRATDFLAQGYFNPFVGTKVLRVTNSNIYVFAYSLEFVENGLHSCR***********YLSRRRAILQKEGFHITGLISNQMDALIGQSLGKRVFKIPNPLYYSFDHQIE******
Disordered Region (DISEMBL)
MVKFGVELAGMDLRRATDFLAQGYFNPFVGTKVLRVTNSNIYVFAYSLEFVENGLHSCRLDNEMQMDSREYLSRRRAILQKEGFHITGLISNQMDALIGQSLGKRVFKIPNPLYYSFDHQIESTKFAS
Disordered Region (DISPRO)
MVKFGVELAGMDLRRATDFLAQGYFNPFVGTKVLRVTNSNIYVFAYSLEFVENGLHSCRLD**MQMDSREYLSRRRAILQKEGFHITGLISNQMDALIGQSLGKRVFKIPNPLYYSFDHQI*******
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVKFGVELAGMDLRRATDFLAQGYFNPFVGTKVLRVTNSNIYVFAYSLEFVENGLHSCRLDNEMQMDSREYLSRRRAILQKEGFHITGLISNQMDALIGQSLGKRVFKIPNPLYYSFDHQIESTKFAS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	128	2.2.26 [Sep-21-2011]
P27061	255	Acid phosphatase 1 OS=Sol	N/A	no	0.351	0.176	0.466	2e-05
O82122	265	Vegetative storage protei	no	no	0.343	0.166	0.488	0.0002
O49195	270	Vegetative storage protei	no	no	0.343	0.162	0.488	0.0003
P10743	254	Stem 31 kDa glycoprotein	no	no	0.351	0.177	0.434	0.0004
P15490	254	Stem 28 kDa glycoprotein	no	no	0.351	0.177	0.434	0.0004

>sp|P27061|PPA1_SOLLC Acid phosphatase 1 OS=Solanum lycopersicum GN=APS1 PE=2 SV=1

 Score = 48.1 bits (113), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 21/45 (46%), Positives = 28/45 (62%)

Query: 71  YLSRRRAILQKEGFHITGLISNQMDALIGQSLGKRVFKIPNPLYY 115
           Y S RR  + +EGF I G   +Q   L+G S+  R FK+PNP+YY
Sbjct: 209 YKSERRNAMVEEGFRIVGNSGDQWSDLLGSSMSYRSFKLPNPMYY 253

Solanum lycopersicum (taxid: 4081)
EC: 3EC: .EC: 1EC: .EC: 3EC: .EC: 2

>sp|O82122|VSP2_ARATH Vegetative storage protein 2 OS=Arabidopsis thaliana GN=VSP2 PE=1 SV=1

 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/45 (48%), Positives = 30/45 (66%), Gaps = 1/45 (2%)

Query: 71  YLSRRRAILQKEGFHITGLISNQMDALIGQSLGKRVFKIPNPLYY 115
           Y S+ R  L K+G++I G I +Q   L+  + G RVFK+PNPLYY
Sbjct: 219 YKSKVRKSLVKKGYNIVGNIGDQWADLVEDTPG-RVFKLPNPLYY 262

May function as somatic storage protein during early seedling development.

Arabidopsis thaliana (taxid: 3702)

>sp|O49195|VSP1_ARATH Vegetative storage protein 1 OS=Arabidopsis thaliana GN=VSP1 PE=2 SV=2

 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 22/45 (48%), Positives = 30/45 (66%), Gaps = 1/45 (2%)

Query: 71  YLSRRRAILQKEGFHITGLISNQMDALIGQSLGKRVFKIPNPLYY 115
           Y S+ R  L K+G++I G I +Q   L+  + G RVFK+PNPLYY
Sbjct: 224 YKSKVRNSLVKKGYNIVGNIGDQWADLVEDTPG-RVFKLPNPLYY 267

May function as somatic storage protein during early seedling development.

Arabidopsis thaliana (taxid: 3702)

>sp|P10743|VSPB_SOYBN Stem 31 kDa glycoprotein OS=Glycine max GN=VSPB PE=2 SV=1

 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 20/46 (43%), Positives = 29/46 (63%), Gaps = 1/46 (2%)

Query: 71  YLSRRRAILQKEGFHITGLISNQMDALIGQSLGK-RVFKIPNPLYY 115
           Y S  R  L ++G+ I G+I +Q   L+G   G+ R FK+PNP+YY
Sbjct: 207 YKSAMRENLLRQGYRIVGIIGDQWSDLLGDHRGESRTFKLPNPMYY 252

May function as somatic storage protein during early seedling development.

Glycine max (taxid: 3847)

>sp|P15490|VSPA_SOYBN Stem 28 kDa glycoprotein OS=Glycine max GN=VSPA PE=2 SV=1

 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 20/46 (43%), Positives = 30/46 (65%), Gaps = 1/46 (2%)

Query: 71  YLSRRRAILQKEGFHITGLISNQMDALIGQSLGK-RVFKIPNPLYY 115
           Y +  R  L ++G++I G+I +Q   L+G   G+ R FK+PNPLYY
Sbjct: 207 YKTAAREKLIRQGYNIVGIIGDQWSDLLGGHRGESRTFKLPNPLYY 252

May function as somatic storage protein during early seedling development.

Glycine max (taxid: 3847)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	128
225449218	308	PREDICTED: uncharacterized protein At2g3	0.507	0.211	0.661	2e-19
224109384	285	predicted protein [Populus trichocarpa]	0.523	0.235	0.582	1e-16
449465029	306	PREDICTED: uncharacterized protein At2g3	0.460	0.192	0.491	6e-11
449521679	306	PREDICTED: uncharacterized protein At2g3	0.460	0.192	0.508	6e-11
255579130	247	hypothetical protein RCOM_0498450 [Ricin	0.328	0.170	0.642	8e-08
168033997	228	predicted protein [Physcomitrella patens	0.781	0.438	0.336	4e-07
302768194	322	hypothetical protein SELMODRAFT_144839 [	0.460	0.183	0.423	8e-06
302753528	322	hypothetical protein SELMODRAFT_139413 [	0.460	0.183	0.423	9e-06
294460680	148	unknown [Picea sitchensis]	0.445	0.385	0.403	2e-05
363808074	255	uncharacterized protein LOC100795218 pre	0.375	0.188	0.5	2e-05

>gi|225449218|ref|XP_002279793.1| PREDICTED: uncharacterized protein At2g39920 [Vitis vinifera] gi|296086101|emb|CBI31542.3| unnamed protein product [Vitis vinifera]

 Score =  100 bits (249), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 43/65 (66%), Positives = 52/65 (80%)

Query: 59  RLDNEMQMDSREYLSRRRAILQKEGFHITGLISNQMDALIGQSLGKRVFKIPNPLYYSFD 118
           R D+EMQMD+ EY SR+R ++QKEGF IT +IS  MDAL G SLGKR+FK+PNP+YY FD
Sbjct: 239 RSDDEMQMDTHEYFSRQRGVIQKEGFRITAVISGHMDALTGPSLGKRIFKLPNPMYYKFD 298

Query: 119 HQIES 123
             IES
Sbjct: 299 DHIES 303

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224109384|ref|XP_002315179.1| predicted protein [Populus trichocarpa] gi|222864219|gb|EEF01350.1| predicted protein [Populus trichocarpa]

 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 39/67 (58%), Positives = 53/67 (79%)

Query: 59  RLDNEMQMDSREYLSRRRAILQKEGFHITGLISNQMDALIGQSLGKRVFKIPNPLYYSFD 118
           R DNE+++DSREY SRR   +QK GF I+G+IS+QMDAL   SLG RVFK+PNP+YY+F+
Sbjct: 216 RSDNEIEIDSREYFSRRMVAMQKAGFRISGVISSQMDALTSASLGHRVFKLPNPVYYNFE 275

Query: 119 HQIESTK 125
           H   +++
Sbjct: 276 HHTGNSR 282

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449465029|ref|XP_004150231.1| PREDICTED: uncharacterized protein At2g39920-like [Cucumis sativus]

 Score = 72.4 bits (176), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 29/59 (49%), Positives = 45/59 (76%)

Query: 59  RLDNEMQMDSREYLSRRRAILQKEGFHITGLISNQMDALIGQSLGKRVFKIPNPLYYSF 117
           R+D+EMQ++   Y SR++A LQ EGF + G+IS+ MDAL   S+G R++K+PNP+Y+ +
Sbjct: 236 RMDDEMQINHPVYFSRQQAALQSEGFSVIGVISSHMDALSALSVGTRIYKLPNPMYFKY 294

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449521679|ref|XP_004167857.1| PREDICTED: uncharacterized protein At2g39920-like [Cucumis sativus]

 Score = 72.4 bits (176), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 30/59 (50%), Positives = 44/59 (74%)

Query: 59  RLDNEMQMDSREYLSRRRAILQKEGFHITGLISNQMDALIGQSLGKRVFKIPNPLYYSF 117
           R+D EMQ++   Y SR++A LQ EGF I G+IS+ MDAL   S+G R++K+PNP+Y+ +
Sbjct: 236 RMDEEMQINHPVYFSRQQAALQSEGFSIIGVISSHMDALSALSVGTRIYKLPNPMYFKY 294

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255579130|ref|XP_002530413.1| hypothetical protein RCOM_0498450 [Ricinus communis] gi|223530062|gb|EEF31983.1| hypothetical protein RCOM_0498450 [Ricinus communis]

 Score = 62.0 bits (149), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 27/42 (64%), Positives = 36/42 (85%)

Query: 59  RLDNEMQMDSREYLSRRRAILQKEGFHITGLISNQMDALIGQ 100
           RLD+EM MDS +Y  +RR ++Q+EGF ITG+IS+QMDALIG+
Sbjct: 171 RLDDEMGMDSHKYFLKRRMMIQREGFRITGIISSQMDALIGR 212

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|168033997|ref|XP_001769500.1| predicted protein [Physcomitrella patens subsp. patens] gi|162679211|gb|EDQ65661.1| predicted protein [Physcomitrella patens subsp. patens]

 Score = 59.3 bits (142), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 35/104 (33%), Positives = 54/104 (51%), Gaps = 4/104 (3%)

Query: 17  TDFLAQGYFNPFVGTKV---LRVTNSNIYVFAYSLEFVENGLHSCRLDNEMQMDSREYLS 73
           TDF AQ +   F+  +       T  N+Y   Y+  +    L S  L +E  + + EY S
Sbjct: 126 TDFRAQNWSFAFITGRSKSQYNKTAQNLYDTGYT-GWKTLVLRSVILPDEENLTADEYKS 184

Query: 74  RRRAILQKEGFHITGLISNQMDALIGQSLGKRVFKIPNPLYYSF 117
           + R  L++EG+ I   + +Q     G+S GKR FK+PNP+YY +
Sbjct: 185 KHRKRLEEEGYRIKSCLGDQWSDCSGESAGKRTFKLPNPMYYIY 228

Source: Physcomitrella patens subsp. patens

Species: Physcomitrella patens

Genus: Physcomitrella

Family: Funariaceae

Order: Funariales

Class: Bryopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302768194|ref|XP_002967517.1| hypothetical protein SELMODRAFT_144839 [Selaginella moellendorffii] gi|300165508|gb|EFJ32116.1| hypothetical protein SELMODRAFT_144839 [Selaginella moellendorffii]

 Score = 55.5 bits (132), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 35/59 (59%)

Query: 59  RLDNEMQMDSREYLSRRRAILQKEGFHITGLISNQMDALIGQSLGKRVFKIPNPLYYSF 117
           R  NE+   +  Y S RR  L+++G+ I   I +Q   LIG + G R FK+PNP+YY F
Sbjct: 264 RFQNEVGTTAVNYKSSRRMQLERKGYRIRASIGDQWSDLIGPAAGNRTFKLPNPMYYIF 322

Source: Selaginella moellendorffii

Species: Selaginella moellendorffii

Genus: Selaginella

Family: Selaginellaceae

Order: Selaginellales

Class: Isoetopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302753528|ref|XP_002960188.1| hypothetical protein SELMODRAFT_139413 [Selaginella moellendorffii] gi|300171127|gb|EFJ37727.1| hypothetical protein SELMODRAFT_139413 [Selaginella moellendorffii]

 Score = 55.1 bits (131), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 35/59 (59%)

Query: 59  RLDNEMQMDSREYLSRRRAILQKEGFHITGLISNQMDALIGQSLGKRVFKIPNPLYYSF 117
           R  NE+   +  Y S RR  L+++G+ I   I +Q   LIG + G R FK+PNP+YY F
Sbjct: 264 RFQNEVGTTAVNYKSSRRMHLERKGYRIRASIGDQWSDLIGPAAGNRTFKLPNPMYYIF 322

Source: Selaginella moellendorffii

Species: Selaginella moellendorffii

Genus: Selaginella

Family: Selaginellaceae

Order: Selaginellales

Class: Isoetopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|294460680|gb|ADE75914.1| unknown [Picea sitchensis]

 Score = 54.3 bits (129), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 23/57 (40%), Positives = 38/57 (66%)

Query: 59  RLDNEMQMDSREYLSRRRAILQKEGFHITGLISNQMDALIGQSLGKRVFKIPNPLYY 115
           R ++E+QMD + + S++R  L+  GF I G+I +Q   + G ++G   FK+PNPLY+
Sbjct: 90  RSEDELQMDIQTFKSKQRLDLESLGFRIKGVIGDQWSDISGPAVGNHTFKMPNPLYH 146

Source: Picea sitchensis

Species: Picea sitchensis

Genus: Picea

Family: Pinaceae

Order: Coniferales

Class: Coniferopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363808074|ref|NP_001242215.1| uncharacterized protein LOC100795218 precursor [Glycine max] gi|255641005|gb|ACU20782.1| unknown [Glycine max] gi|255644428|gb|ACU22719.1| unknown [Glycine max]

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 24/48 (50%), Positives = 31/48 (64%)

Query: 68  SREYLSRRRAILQKEGFHITGLISNQMDALIGQSLGKRVFKIPNPLYY 115
           S EY S  R  L+KEG+ I G + +Q   L+G + G R FK+PNPLYY
Sbjct: 207 SFEYKSAEREKLEKEGYRIIGNVGDQWSDLLGSNKGTRTFKLPNPLYY 254

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	128
TAIR|locus:2176267	257	AT5G51260 [Arabidopsis thalian	0.351	0.175	0.422	1.2e-06
TAIR|locus:2117338	260	AT4G25150 [Arabidopsis thalian	0.679	0.334	0.311	7e-06
TAIR|locus:2118329	256	AT4G29270 [Arabidopsis thalian	0.445	0.222	0.368	1.1e-05
TAIR|locus:2064128	251	AT2G38600 [Arabidopsis thalian	0.421	0.215	0.4	1.4e-05
TAIR|locus:2118314	255	AT4G29260 [Arabidopsis thalian	0.421	0.211	0.388	5.2e-05
TAIR|locus:2184580	265	VSP2 "AT5G24770" [Arabidopsis	0.343	0.166	0.488	7.2e-05
TAIR|locus:2184585	270	VSP1 "AT5G24780" [Arabidopsis	0.343	0.162	0.488	9.6e-05
TAIR|locus:2024102	271	AT1G04040 [Arabidopsis thalian	0.414	0.195	0.320	0.00013
TAIR|locus:2172447	272	AT5G44020 [Arabidopsis thalian	0.671	0.316	0.260	0.00016

TAIR|locus:2176267 AT5G51260 [Arabidopsis thaliana (taxid:3702)]

 Score = 99 (39.9 bits), Expect = 1.2e-06, Sum P(2) = 1.2e-06
 Identities = 19/45 (42%), Positives = 28/45 (62%)

Query:    71 YLSRRRAILQKEGFHITGLISNQMDALIGQSLGKRVFKIPNPLYY 115
             Y S +R  + KEG+ I G   +Q   L+G S+ +R FK+ NP+YY
Sbjct:   211 YKSEKRDEMVKEGYRIRGNSGDQWSDLLGTSMSQRSFKLANPMYY 255

GO:0003993 "acid phosphatase activity" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2117338 AT4G25150 [Arabidopsis thaliana (taxid:3702)]

 Score = 109 (43.4 bits), Expect = 7.0e-06, P = 7.0e-06
 Identities = 29/93 (31%), Positives = 47/93 (50%)

Query:    29 VGTKVLRVTNSNIYVFAYSLEFVEN-GLHSCRLDNEMQMDSRE-----YLSRRRAILQKE 82
             +G KV+ +T         ++E + N G H+        +D R      Y S +R  + KE
Sbjct:   166 LGYKVILLTGRRENHRVITVENLRNAGFHNWDKLILRSLDDRNKTATMYKSEKREEMVKE 225

Query:    83 GFHITGLISNQMDALIGQSLGKRVFKIPNPLYY 115
             G+ I G   +Q   L+G ++ +R FK+PNP+YY
Sbjct:   226 GYRIRGNSGDQWSDLLGSAMSERSFKLPNPMYY 258

GO:0003993 "acid phosphatase activity" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2118329 AT4G29270 [Arabidopsis thaliana (taxid:3702)]

 Score = 107 (42.7 bits), Expect = 1.1e-05, P = 1.1e-05
 Identities = 21/57 (36%), Positives = 34/57 (59%)

Query:    59 RLDNEMQMDSREYLSRRRAILQKEGFHITGLISNQMDALIGQSLGKRVFKIPNPLYY 115
             R  N+    + +Y S +R+ + KEG+ I G   +Q   L+G ++  R FK+PNP+YY
Sbjct:   198 RGQNDQGKTATQYKSEQRSQVVKEGYTIHGNTGDQWSDLLGFAVASRSFKVPNPMYY 254

GO:0003993 "acid phosphatase activity" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0016132 "brassinosteroid biosynthetic process" evidence=RCA

TAIR|locus:2064128 AT2G38600 [Arabidopsis thaliana (taxid:3702)]

 Score = 106 (42.4 bits), Expect = 1.4e-05, P = 1.4e-05
 Identities = 22/55 (40%), Positives = 33/55 (60%)

Query:    61 DNEMQMDSREYLSRRRAILQKEGFHITGLISNQMDALIGQSLGKRVFKIPNPLYY 115
             DN+ Q  +  Y +R R  + +EG+ I G + +Q   L G+  G R FKIPNP+Y+
Sbjct:   196 DNKRQ-SATTYKTRIRKEMMEEGYRIWGNVGDQWSDLQGEYSGDRTFKIPNPMYF 249

GO:0003993 "acid phosphatase activity" evidence=IEA;ISS

TAIR|locus:2118314 AT4G29260 [Arabidopsis thaliana (taxid:3702)]

 Score = 101 (40.6 bits), Expect = 5.2e-05, P = 5.2e-05
 Identities = 21/54 (38%), Positives = 31/54 (57%)

Query:    62 NEMQMDSREYLSRRRAILQKEGFHITGLISNQMDALIGQSLGKRVFKIPNPLYY 115
             N+    +  Y S +R+ L +EGF I G   +Q   L G ++  R FK+PNP+YY
Sbjct:   200 NDQGKSATNYKSEQRSKLIEEGFKIRGNSGDQWSDLQGFAVADRSFKVPNPMYY 253

GO:0003993 "acid phosphatase activity" evidence=IEA;ISS

GO:0005576 "extracellular region" evidence=ISM

GO:0005773 "vacuole" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

TAIR|locus:2184580 VSP2 "AT5G24770" [Arabidopsis thaliana (taxid:3702)]

 Score = 100 (40.3 bits), Expect = 7.2e-05, P = 7.2e-05
 Identities = 22/45 (48%), Positives = 30/45 (66%)

Query:    71 YLSRRRAILQKEGFHITGLISNQMDALIGQSLGKRVFKIPNPLYY 115
             Y S+ R  L K+G++I G I +Q   L+  + G RVFK+PNPLYY
Sbjct:   219 YKSKVRKSLVKKGYNIVGNIGDQWADLVEDTPG-RVFKLPNPLYY 262

GO:0003993 "acid phosphatase activity" evidence=ISS;IDA

GO:0009507 "chloroplast" evidence=ISM

GO:0009753 "response to jasmonic acid stimulus" evidence=TAS

GO:0042538 "hyperosmotic salinity response" evidence=IGI

GO:0006979 "response to oxidative stress" evidence=IEP

GO:0046688 "response to copper ion" evidence=IEP

GO:0009625 "response to insect" evidence=IEP

GO:0005773 "vacuole" evidence=IDA

GO:0022626 "cytosolic ribosome" evidence=IDA

GO:0009611 "response to wounding" evidence=IEP

GO:0002213 "defense response to insect" evidence=IDA

TAIR|locus:2184585 VSP1 "AT5G24780" [Arabidopsis thaliana (taxid:3702)]

 Score = 99 (39.9 bits), Expect = 9.6e-05, P = 9.6e-05
 Identities = 22/45 (48%), Positives = 30/45 (66%)

Query:    71 YLSRRRAILQKEGFHITGLISNQMDALIGQSLGKRVFKIPNPLYY 115
             Y S+ R  L K+G++I G I +Q   L+  + G RVFK+PNPLYY
Sbjct:   224 YKSKVRNSLVKKGYNIVGNIGDQWADLVEDTPG-RVFKLPNPLYY 267

GO:0003993 "acid phosphatase activity" evidence=ISS;IDA

GO:0009507 "chloroplast" evidence=ISM

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP;TAS

GO:0008134 "transcription factor binding" evidence=IDA

GO:0006952 "defense response" evidence=IEP

GO:0005773 "vacuole" evidence=IDA

TAIR|locus:2024102 AT1G04040 [Arabidopsis thaliana (taxid:3702)]

 Score = 98 (39.6 bits), Expect = 0.00013, P = 0.00013
 Identities = 17/53 (32%), Positives = 31/53 (58%)

Query:    63 EMQMDSREYLSRRRAILQKEGFHITGLISNQMDALIGQSLGKRVFKIPNPLYY 115
             + Q + ++Y S +R  L   G+ + G++ +Q  +  G  L +R FK+PN +YY
Sbjct:   217 DQQKEVKQYKSEKRKWLMSLGYRVWGVMGDQWSSFAGCPLPRRTFKLPNSIYY 269

GO:0003993 "acid phosphatase activity" evidence=IEA;ISS

GO:0005773 "vacuole" evidence=IDA

GO:0005618 "cell wall" evidence=IDA

GO:0009505 "plant-type cell wall" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0000271 "polysaccharide biosynthetic process" evidence=RCA

GO:0009825 "multidimensional cell growth" evidence=RCA

GO:0009832 "plant-type cell wall biogenesis" evidence=RCA

GO:0009932 "cell tip growth" evidence=RCA

GO:0010817 "regulation of hormone levels" evidence=RCA

GO:0016049 "cell growth" evidence=RCA

GO:0030243 "cellulose metabolic process" evidence=RCA

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

GO:0071555 "cell wall organization" evidence=RCA

TAIR|locus:2172447 AT5G44020 [Arabidopsis thaliana (taxid:3702)]

 Score = 97 (39.2 bits), Expect = 0.00016, P = 0.00016
 Identities = 24/92 (26%), Positives = 48/92 (52%)

Query:    30 GTKVLRVTNSNIYVFAYSLE-FVENGLHS-----CRLDNEMQMDSREYLSRRRAILQKEG 83
             G K+  +++   Y+ + ++E  +E G HS      R +++ +    +Y +  R  L   G
Sbjct:   179 GFKIFLISSRKEYLRSATVENLIEAGYHSWSNLLLRGEDDEKKSVSQYKADLRTWLTSLG 238

Query:    84 FHITGLISNQMDALIGQSLGKRVFKIPNPLYY 115
             + + G++  Q ++  G  + KR FK+PN +YY
Sbjct:   239 YRVWGVMGAQWNSFSGCPVPKRTFKLPNSIYY 270


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.324   0.139   0.400    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      128       128   0.00091  102 3  11 22  0.47    30
                                                     29  0.41    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  9
  No. of states in DFA:  525 (56 KB)
  Total size of DFA:  111 KB (2075 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  13.27u 0.08s 13.35t   Elapsed:  00:00:02
  Total cpu time:  13.27u 0.08s 13.35t   Elapsed:  00:00:02
  Start:  Mon May 20 20:37:35 2013   End:  Mon May 20 20:37:37 2013

GO:0003993 "acid phosphatase activity" evidence=IEA;ISS

GO:0005576 "extracellular region" evidence=ISM

GO:0009507 "chloroplast" evidence=IDA

GO:0005773 "vacuole" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0009684 "indoleacetic acid biosynthetic process" evidence=RCA

GO:0019344 "cysteine biosynthetic process" evidence=RCA

GO:0019761 "glucosinolate biosynthetic process" evidence=RCA

GO:0030003 "cellular cation homeostasis" evidence=RCA

GO:0070838 "divalent metal ion transport" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00018293001 SubName- Full=Chromosome chr13 scaffold_17, whole genome shotgun sequence; (306 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	128
TIGR01675	229	TIGR01675, plant-AP, plant acid phosphatase	1e-11
pfam03767	213	pfam03767, Acid_phosphat_B, HAD superfamily, subfa	1e-08
TIGR01680	275	TIGR01680, Veg_Stor_Prot, vegetative storage prote	2e-04

>gnl|CDD|130736 TIGR01675, plant-AP, plant acid phosphatase

 Score = 59.0 bits (143), Expect = 1e-11
 Identities = 22/57 (38%), Positives = 30/57 (52%)

Query: 59  RLDNEMQMDSREYLSRRRAILQKEGFHITGLISNQMDALIGQSLGKRVFKIPNPLYY 115
           R   +       Y S  R  L +EG+ I G I +Q   L+G   G+R FK+PNP+YY
Sbjct: 171 RGLEDSNKTVVTYKSEVRKSLMEEGYRIWGNIGDQWSDLLGSPPGRRTFKLPNPMYY 227

This model represents a family of acid phosphatase from plants which are most closely related to the (so called) class B non-specific acid phosphatase OlpA (TIGR01533, which is believed to be a 5'-nucleotide phosphatase) and somewhat more distantly to another class B phosphatase, AphA (TIGR01672). Together these three clades define a subfamily (pfam03767) which corresponds to the IIIB subfamily of the haloacid dehalogenase (HAD) superfamily of aspartate nucleophile hydrolases. It has been reported that the best substrate for this enzyme that could be found was purine 5'-nucleoside phosphates. This is in concordance with the assignment of the H. influenzae hel protein (from TIGR01533) as a 5'-nucleotidase, however there is presently no other evidence to support this specific function for these plant phosphatases. Many genes from this family have been annotated as vegetative storage proteins due to their close homology with these earlier-characterized gene products which are highly expressed in leaves. There are significant differences however, including expression levels and distribution. The most important difference is the lack in authentic VSPs of the nucleophilic aspartate residue, which is instead replaced by serine, glycine or asparagine. Thus these proteins can not be expected to be active phosphatases. This issue was confused by the publication in 1992 of an article claiming activity for the Glycine max VSP. In 1994 this assertion was refuted by the separation of the activity from the VSP. This model explicitly excludes the VSPs which lack the nucleophilc aspartate. The possibility exists, however, that some members of this family may, while containing all of the conserved HAD-superfamily catalytic residues, lack activity and have a function related to the function of the VSPs rather than the acid phosphatases. Length = 229

>gnl|CDD|217719 pfam03767, Acid_phosphat_B, HAD superfamily, subfamily IIIB (Acid phosphatase)

 Score = 50.8 bits (122), Expect = 1e-08
 Identities = 22/59 (37%), Positives = 32/59 (54%), Gaps = 1/59 (1%)

Query: 59  RLDNEMQMDSREYLSRRRAILQKEGFHITGLISNQMDALIG-QSLGKRVFKIPNPLYYS 116
           R   +    +  Y S RR  L K+G++I G I +Q    +G  + G R FK+PNP+YY 
Sbjct: 154 RGKKDSNKSATSYKSERRKKLVKKGYNIVGNIGDQWSDFLGNGARGIRTFKLPNPMYYI 212

This family proteins includes acid phosphatases and a number of vegetative storage proteins. Length = 213

>gnl|CDD|130741 TIGR01680, Veg_Stor_Prot, vegetative storage protein

 Score = 38.9 bits (90), Expect = 2e-04
 Identities = 20/44 (45%), Positives = 29/44 (65%), Gaps = 1/44 (2%)

Query: 70  EYLSRRRAILQKEGFHITGLISNQMDALIGQSLGK-RVFKIPNP 112
           EY +  RA L +EG++I G+I +Q + L G+  G  R FK+PNP
Sbjct: 208 EYKTAARAKLIQEGYNIVGIIGDQWNDLKGEHRGAIRSFKLPNP 251

The proteins represented by this model are close relatives of the plant acid phosphatases (TIGR01675), are limited to members of the Phaseoleae including Glycine max (soybean) and Phaseolus vulgaris (kidney bean). These proteins are highly expressed in the leaves of repeatedly depodded plants. VSP differs most strinkingly from the acid phosphatases in the lack of the conserved nucleophilic aspartate residue in the N-terminus, thus, they should be inactive as phosphatases. This issue was confused by the publication in 1992 of an article claiming activity for the Glycine max VSP. In 1994 this assertion was refuted by the separation of the activity from the VSP. Length = 275

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	128
TIGR01675	229	plant-AP plant acid phosphatase. This model explic	100.0
TIGR01680	275	Veg_Stor_Prot vegetative storage protein. The prot	99.97
PF03767	229	Acid_phosphat_B: HAD superfamily, subfamily IIIB (	99.96
TIGR01533	266	lipo_e_P4 5'-nucleotidase, lipoprotein e(P4) famil	99.56
COG2503	274	Predicted secreted acid phosphatase [General funct	98.89
PRK11009	237	aphA acid phosphatase/phosphotransferase; Provisio	97.94
TIGR01672	237	AphA HAD superfamily (subfamily IIIB) phosphatase,	89.6
smart00775	157	LNS2 LNS2 domain. This domain is found in Saccharo	84.22

>TIGR01675 plant-AP plant acid phosphatase

Probab=100.00  E-value=5.3e-35  Score=235.69  Aligned_cols=101  Identities=25%  Similarity=0.298  Sum_probs=91.4

Q ss_pred             hHHHHHHHhcCccccccchh----hhHHHHHHHHHcCCCcccccCCceeeecCCCCCcchhhhhHHHHHHHHHcCceEEE
Q 046635           13 LRRATDFLAQGYFNPFVGTK----VLRVTNSNIYVFAYSLEFVENGLHSCRLDNEMQMDSREYLSRRRAILQKEGFHITG   88 (128)
Q Consensus        13 ~r~~~~~~~q~~~~~~~~~~----~~~aT~~NL~~aGY~~~~~~~~~LiLR~~~~~~~sa~~YKS~~R~~Le~~GYrIvg   88 (128)
                      ...+++.+.+.++.+|+.|.    ..++|.+||+++||++    |++|+||+.++..+++++|||++|++|+++||+||+
T Consensus       125 al~l~~~l~~~G~~Vf~lTGR~e~~r~~T~~nL~~~G~~~----~~~LiLR~~~d~~~~~~~yKs~~R~~l~~~GYrIv~  200 (229)
T TIGR01675       125 GLKLYQKIIELGIKIFLLSGRWEELRNATLDNLINAGFTG----WKHLILRGLEDSNKTVVTYKSEVRKSLMEEGYRIWG  200 (229)
T ss_pred             HHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHHHHcCCCC----cCeeeecCCCCCCchHhHHHHHHHHHHHhCCceEEE
Confidence            46677888777777777554    4568999999999999    999999998778889999999999999999999999


Q ss_pred             EcCCccccccCCCCcceeeecCCcccccc
Q 046635           89 LISNQMDALIGQSLGKRVFKIPNPLYYSF  117 (128)
Q Consensus        89 nIGDQwSDL~G~~~g~RtFKLPNPmYyi~  117 (128)
                      |||||||||.|+++++|+||||||||||+
T Consensus       201 ~iGDq~sDl~G~~~~~RtFKLPNPmYyi~  229 (229)
T TIGR01675       201 NIGDQWSDLLGSPPGRRTFKLPNPMYYVP  229 (229)
T ss_pred             EECCChHHhcCCCccCceeeCCCCcccCC
Confidence            99999999999999999999999999985

This model explicitly excludes the VSPs which lack the nucleophilc aspartate. The possibility exists, however, that some members of this family may, while containing all of the conserved HAD-superfamily catalytic residues, lack activity and have a function related to the function of the VSPs rather than the acid phosphatases.

>TIGR01680 Veg_Stor_Prot vegetative storage protein

Probab=99.97  E-value=1.1e-30  Score=216.19  Aligned_cols=100  Identities=26%  Similarity=0.305  Sum_probs=87.7

Q ss_pred             hHHHHHHHhcCccccccchh----hhHHHHHHHHHcCCCcccccCCceeeecCCC-CCcchhhhhHHHHHHHHHcCceEE
Q 046635           13 LRRATDFLAQGYFNPFVGTK----VLRVTNSNIYVFAYSLEFVENGLHSCRLDNE-MQMDSREYLSRRRAILQKEGFHIT   87 (128)
Q Consensus        13 ~r~~~~~~~q~~~~~~~~~~----~~~aT~~NL~~aGY~~~~~~~~~LiLR~~~~-~~~sa~~YKS~~R~~Le~~GYrIv   87 (128)
                      ...++..+.+.++.+|+.+.    ..++|.+||+++||++    |++|+||++++ ..+++++|||.+|++|+++||+||
T Consensus       150 al~ly~~l~~~G~kIf~VSgR~e~~r~aT~~NL~kaGy~~----~~~LiLR~~~D~~~~~av~yKs~~R~~li~eGYrIv  225 (275)
T TIGR01680       150 TLKNYNKLVSLGFKIIFLSGRLKDKQAVTEANLKKAGYHT----WEKLILKDPQDNSAENAVEYKTAARAKLIQEGYNIV  225 (275)
T ss_pred             HHHHHHHHHHCCCEEEEEeCCchhHHHHHHHHHHHcCCCC----cceeeecCCCCCccchhHHHHHHHHHHHHHcCceEE
Confidence            45667777777777776544    5679999999999998    99999998864 577999999999999999999999


Q ss_pred             EEcCCccccccCCCCc-ceeeecCCccccc
Q 046635           88 GLISNQMDALIGQSLG-KRVFKIPNPLYYS  116 (128)
Q Consensus        88 gnIGDQwSDL~G~~~g-~RtFKLPNPmYyi  116 (128)
                      +|||||||||.|++.+ .|+||||||||-.
T Consensus       226 ~~iGDq~sDl~G~~~g~~RtFKLPNP~~~~  255 (275)
T TIGR01680       226 GIIGDQWNDLKGEHRGAIRSFKLPNPCTTF  255 (275)
T ss_pred             EEECCCHHhccCCCccCcceecCCCccccc
Confidence            9999999999999985 6999999999864

The proteins represented by this model are close relatives of the plant acid phosphatases (TIGR01675), are limited to members of the Phaseoleae including Glycine max (soybean) and Phaseolus vulgaris (kidney bean). These proteins are highly expressed in the leaves of repeatedly depodded plants. VSP differs most strinkingly from the acid phosphatases in the lack of the conserved nucleophilic aspartate residue in the N-terminus, thus, they should be inactive as phosphatases. This issue was confused by the publication in 1992 of an article claiming activity for the Glycine max VSP. In 1994 this assertion was refuted by the separation of the activity from the VSP.

>PF03767 Acid_phosphat_B: HAD superfamily, subfamily IIIB (Acid phosphatase); InterPro: IPR005519 This family of class B acid phosphatases also contains a number of vegetative storage proteins (VPS25)

Probab=99.96  E-value=1e-29  Score=201.96  Aligned_cols=99  Identities=24%  Similarity=0.375  Sum_probs=78.9

Q ss_pred             HHHHHHhcCcccccc-chh---hhHHHHHHHHHcCCCcccccCCceeeecCCC-CCcchhhhhHHHHHHHHHcCceEEEE
Q 046635           15 RATDFLAQGYFNPFV-GTK---VLRVTNSNIYVFAYSLEFVENGLHSCRLDNE-MQMDSREYLSRRRAILQKEGFHITGL   89 (128)
Q Consensus        15 ~~~~~~~q~~~~~~~-~~~---~~~aT~~NL~~aGY~~~~~~~~~LiLR~~~~-~~~sa~~YKS~~R~~Le~~GYrIvgn   89 (128)
                      .++..+.+.++.+|+ +++   .+++|++||+++||++    |++|+||++++ ..+++.+||+++|++|+++||+||++
T Consensus       122 ~l~~~~~~~G~~V~~iT~R~~~~r~~T~~nL~~~G~~~----~~~l~lr~~~~~~~~~~~~yK~~~r~~i~~~Gy~Ii~~  197 (229)
T PF03767_consen  122 ELYNYARSRGVKVFFITGRPESQREATEKNLKKAGFPG----WDHLILRPDKDPSKKSAVEYKSERRKEIEKKGYRIIAN  197 (229)
T ss_dssp             HHHHHHHHTTEEEEEEEEEETTCHHHHHHHHHHHTTST----BSCGEEEEESSTSS------SHHHHHHHHHTTEEEEEE
T ss_pred             HHHHHHHHCCCeEEEEecCCchhHHHHHHHHHHcCCCc----cchhccccccccccccccccchHHHHHHHHcCCcEEEE
Confidence            444455555555554 444   6779999999999998    99999999887 67789999999999999999999999


Q ss_pred             cCCccccccC----CCCcceeeecCCcccccc
Q 046635           90 ISNQMDALIG----QSLGKRVFKIPNPLYYSF  117 (128)
Q Consensus        90 IGDQwSDL~G----~~~g~RtFKLPNPmYyi~  117 (128)
                      ||||||||.|    ++.+.|+|||||||||+|
T Consensus       198 iGD~~~D~~~~~~~~~~~~r~f~lPNp~Yg~w  229 (229)
T PF03767_consen  198 IGDQLSDFSGAKTAGARAERWFKLPNPMYGSW  229 (229)
T ss_dssp             EESSGGGCHCTHHHHHHHTTEEE-TTSSSSHH
T ss_pred             eCCCHHHhhcccccccccceEEEcCCCCCCCC
Confidence            9999999999    776789999999999987

The acid phosphatase activity of VPS has been experimentally demonstrated [].; GO: 0003993 acid phosphatase activity; PDB: 3PCT_C 2I34_A 2I33_A 1Z5U_D 1Z5G_A 2AUT_C 1Z88_B 3OCV_A 3OCZ_A 3OCX_A ....

>TIGR01533 lipo_e_P4 5'-nucleotidase, lipoprotein e(P4) family

Probab=99.56  E-value=8e-15  Score=120.31  Aligned_cols=96  Identities=21%  Similarity=0.331  Sum_probs=72.1

Q ss_pred             HHHHH-hcCccccccchh---hhHHHHHHHHHcCCCcccccCCceeeecCCCCCcchhhhhHHHHHHHHHcCceEEEEcC
Q 046635           16 ATDFL-AQGYFNPFVGTK---VLRVTNSNIYVFAYSLEFVENGLHSCRLDNEMQMDSREYLSRRRAILQKEGFHITGLIS   91 (128)
Q Consensus        16 ~~~~~-~q~~~~~~~~~~---~~~aT~~NL~~aGY~~~~~~~~~LiLR~~~~~~~sa~~YKS~~R~~Le~~GYrIvgnIG   91 (128)
                      +...+ .+|.-.-+++.+   ..+.|.+||.+.|++.  .+.++|++|+..       .+|..+|+.|++ ||+|+++||
T Consensus       126 ~L~~L~~~G~~v~iVTnR~~~~~~~T~~~Lkk~Gi~~--~~~d~lllr~~~-------~~K~~rr~~I~~-~y~Ivl~vG  195 (266)
T TIGR01533       126 FLNYANSKGVKIFYVSNRSEKEKAATLKNLKRFGFPQ--ADEEHLLLKKDK-------SSKESRRQKVQK-DYEIVLLFG  195 (266)
T ss_pred             HHHHHHHCCCeEEEEeCCCcchHHHHHHHHHHcCcCC--CCcceEEeCCCC-------CCcHHHHHHHHh-cCCEEEEEC
Confidence            34444 344444445554   4668999999999986  446899999643       258888888875 899999999


Q ss_pred             CccccccCC-------------------CCcceeeecCCccccccchhh
Q 046635           92 NQMDALIGQ-------------------SLGKRVFKIPNPLYYSFDHQI  121 (128)
Q Consensus        92 DQwSDL~G~-------------------~~g~RtFKLPNPmYyi~e~~~  121 (128)
                      |||+||.+.                   ..|.+.|-||||||..||.=.
T Consensus       196 D~~~Df~~~~~~~~~~~~r~~~v~~~~~~fG~~~i~lPNp~YG~we~~~  244 (266)
T TIGR01533       196 DNLLDFDDFFYKDKESQDRQALVLQNQEKFGKKFIILPNPMYGSWEGAI  244 (266)
T ss_pred             CCHHHhhhhhccCcchHHHHHHHHHHHHHhCCCeEEecCCCCcchhhhh
Confidence            999999763                   234678899999999998644

which in turn belongs to the haloacid dehalogenase (HAD) superfamily of aspartate-dependent hydrolases. Members are found on the outer membrane of Gram-negative bacteria and the cytoplasmic membrane of Gram-positive bacteria. Most members have classic lipoprotein signal sequences. A critical role of this 5'-nucleotidase in Haemophilus influenzae is the degradation of external riboside in order to allow transport into the cell. An earlier suggested role in hemin transport is no longer current. This enzyme may also have other physiologically significant roles.

>COG2503 Predicted secreted acid phosphatase [General function prediction only]

Probab=98.89  E-value=3.1e-09  Score=88.71  Aligned_cols=78  Identities=21%  Similarity=0.301  Sum_probs=65.2

Q ss_pred             hHHHHHHHHHcCCCcccccCCceeeecCCCCCcchhhhhHHHHHHHHHcCceEEEEcCCccccccCC-------------
Q 046635           34 LRVTNSNIYVFAYSLEFVENGLHSCRLDNEMQMDSREYLSRRRAILQKEGFHITGLISNQMDALIGQ-------------  100 (128)
Q Consensus        34 ~~aT~~NL~~aGY~~~~~~~~~LiLR~~~~~~~sa~~YKS~~R~~Le~~GYrIvgnIGDQwSDL~G~-------------  100 (128)
                      ..+|.+||++.|+|+  +.-.+++|......       |+.+|+.+++ +|.||.-|||+..|+.-.             
T Consensus       153 ~~~T~~nLk~~g~~~--~~~~~~llkk~~k~-------Ke~R~~~v~k-~~~iVm~vGDNl~DF~d~~~k~~~~eR~Alv  222 (274)
T COG2503         153 KDGTIENLKSEGLPQ--VLESHLLLKKDKKS-------KEVRRQAVEK-DYKIVMLVGDNLDDFGDNAYKKAEAERRALV  222 (274)
T ss_pred             cchhHHHHHHcCccc--ccccceEEeeCCCc-------HHHHHHHHhh-ccceeeEecCchhhhcchhhhhhhHHHHHHH
Confidence            568999999999997  66788888854433       8888888777 999999999999999543             


Q ss_pred             -----CCcceeeecCCccccccchhh
Q 046635          101 -----SLGKRVFKIPNPLYYSFDHQI  121 (128)
Q Consensus       101 -----~~g~RtFKLPNPmYyi~e~~~  121 (128)
                           ..|++.+-||||||.-||.=+
T Consensus       223 ~~~~~~FGk~~Ii~pN~~YG~wE~gi  248 (274)
T COG2503         223 KQNQKKFGKKFIILPNSMYGGWEGGI  248 (274)
T ss_pred             HHHHHHhCceEEEecCCccCcccchh
Confidence                 457788899999999999865

>PRK11009 aphA acid phosphatase/phosphotransferase; Provisional

Probab=97.94  E-value=1.6e-05  Score=64.49  Aligned_cols=92  Identities=12%  Similarity=0.120  Sum_probs=62.4

Q ss_pred             hHHHHHHHhcCcccccc-chh---hhHHHHHHHHH-cCCCcccccCCceeeecCCCCCcchhhhhHHHHHHHHHcCceEE
Q 046635           13 LRRATDFLAQGYFNPFV-GTK---VLRVTNSNIYV-FAYSLEFVENGLHSCRLDNEMQMDSREYLSRRRAILQKEGFHIT   87 (128)
Q Consensus        13 ~r~~~~~~~q~~~~~~~-~~~---~~~aT~~NL~~-aGY~~~~~~~~~LiLR~~~~~~~sa~~YKS~~R~~Le~~GYrIv   87 (128)
                      .+.+...+..-+...++ +++   ..+.|.+||.+ .|.|.  .++-.+++-.+.       .+|..++..+++.|..| 
T Consensus       119 a~elL~~L~~~G~~I~iVTnR~~~k~~~t~~~Llk~~gip~--~~~f~vil~gd~-------~~K~~K~~~l~~~~i~I-  188 (237)
T PRK11009        119 ARQLIDMHVKRGDSIYFITGRTATKTETVSKTLADDFHIPA--DNMNPVIFAGDK-------PGQYTKTQWLKKKNIRI-  188 (237)
T ss_pred             HHHHHHHHHHCCCeEEEEeCCCCcccHHHHHHHHHHcCCCc--ccceeEEEcCCC-------CCCCCHHHHHHhcCCeE-
Confidence            45556666444455554 554   56789999997 99963  123355554332       26778888888877644 


Q ss_pred             EEcCCccccccCC----CCcceeeecCCcccc
Q 046635           88 GLISNQMDALIGQ----SLGKRVFKIPNPLYY  115 (128)
Q Consensus        88 gnIGDQwSDL~G~----~~g~RtFKLPNPmYy  115 (128)
                       -|||+|+|+.+.    -.+.|.+..|||+|-
T Consensus       189 -~IGDs~~Di~aA~~AGi~~I~v~~G~~~~~~  219 (237)
T PRK11009        189 -FYGDSDNDITAAREAGARGIRILRAANSTYK  219 (237)
T ss_pred             -EEcCCHHHHHHHHHcCCcEEEEecCCCCCCC
Confidence             499999999775    334578899999994

>TIGR01672 AphA HAD superfamily (subfamily IIIB) phosphatase, TIGR01672

Probab=89.60  E-value=0.48  Score=38.50  Aligned_cols=85  Identities=12%  Similarity=0.074  Sum_probs=51.3

Q ss_pred             hHHHHHHHhcCcccccc-chh---hhHHHHHHHH-HcCCCcccccCCceeeecCCCCCcchhhhhHHHHHHHHHcCceEE
Q 046635           13 LRRATDFLAQGYFNPFV-GTK---VLRVTNSNIY-VFAYSLEFVENGLHSCRLDNEMQMDSREYLSRRRAILQKEGFHIT   87 (128)
Q Consensus        13 ~r~~~~~~~q~~~~~~~-~~~---~~~aT~~NL~-~aGY~~~~~~~~~LiLR~~~~~~~sa~~YKS~~R~~Le~~GYrIv   87 (128)
                      .+.+.+.+.+-+...++ +.+   -.+.|.++|. ..|++.    ...+++-.....     .+|...+..|++.|  |+
T Consensus       119 a~elL~~l~~~G~~i~iVTnr~~~k~~~~a~~ll~~lGi~~----~f~~i~~~d~~~-----~~Kp~~~~~l~~~~--i~  187 (237)
T TIGR01672       119 ARQLIDMHQRRGDAIFFVTGRTPGKTDTVSKTLAKNFHIPA----MNPVIFAGDKPG-----QYQYTKTQWIQDKN--IR  187 (237)
T ss_pred             HHHHHHHHHHCCCEEEEEeCCCCCcCHHHHHHHHHHhCCch----heeEEECCCCCC-----CCCCCHHHHHHhCC--Ce
Confidence            34455556555555555 444   2566788877 589986    345565543321     13455556666655  45


Q ss_pred             EEcCCccccccCC-CCcceeee
Q 046635           88 GLISNQMDALIGQ-SLGKRVFK  108 (128)
Q Consensus        88 gnIGDQwSDL~G~-~~g~RtFK  108 (128)
                      .-|||.++|+.+. .+|.++.-
T Consensus       188 i~vGDs~~DI~aAk~AGi~~I~  209 (237)
T TIGR01672       188 IHYGDSDNDITAAKEAGARGIR  209 (237)
T ss_pred             EEEeCCHHHHHHHHHCCCCEEE
Confidence            6799999999765 55555443

Supporting evidence for the inclusion in the HAD superfamily, whose phosphatase members are magnesium dependent, is the inhibition by EDTA and calcium ions, and stimulation by magnesium ion.

>smart00775 LNS2 LNS2 domain

Probab=84.22  E-value=10  Score=28.52  Aligned_cols=90  Identities=12%  Similarity=0.075  Sum_probs=57.4

Q ss_pred             hHHHHHHHhcCccccccch-h---hhHHHHHHHHH---cC--CCcccccCCceeeecCCCC--------CcchhhhhHHH
Q 046635           13 LRRATDFLAQGYFNPFVGT-K---VLRVTNSNIYV---FA--YSLEFVENGLHSCRLDNEM--------QMDSREYLSRR   75 (128)
Q Consensus        13 ~r~~~~~~~q~~~~~~~~~-~---~~~aT~~NL~~---aG--Y~~~~~~~~~LiLR~~~~~--------~~sa~~YKS~~   75 (128)
                      ...+++++.+.+...++.| +   ....|.+-|..   .|  .|.     ..+++++....        .....+||.+.
T Consensus        32 ~~~a~~~l~~~G~~ivy~TGRp~~~~~~t~~~l~~~~~~~~~lp~-----g~li~~~g~~~~~~~~e~i~~~~~~~K~~~  106 (157)
T smart00775       32 VAKLYRDIQNNGYKILYLTARPIGQADRTRSYLSQIKQDGHNLPH-----GPVLLSPDRLFAALHREVISKKPEVFKIAC  106 (157)
T ss_pred             HHHHHHHHHHcCCeEEEEcCCcHHHHHHHHHHHHHhhhccccCCC-----ceEEEcCCcchhhhhcccccCCHHHHHHHH
Confidence            4567777666555554444 4   22245666666   35  553     57777765432        23455689888


Q ss_pred             HHHHHH----cCceEEEEcCCcccccc-----CCCCcceeee
Q 046635           76 RAILQK----EGFHITGLISNQMDALI-----GQSLGKRVFK  108 (128)
Q Consensus        76 R~~Le~----~GYrIvgnIGDQwSDL~-----G~~~g~RtFK  108 (128)
                      =+.|.+    .+..+++-+||..+|..     |-+.+ |.|-
T Consensus       107 l~~i~~~~~~~~~~f~~~~gn~~~D~~~y~~~gi~~~-~i~~  147 (157)
T smart00775      107 LRDIKSLFPPQGNPFYAGFGNRITDVISYSAVGIPPS-RIFT  147 (157)
T ss_pred             HHHHHHhcCCCCCCEEEEeCCCchhHHHHHHcCCChh-hEEE
Confidence            888877    58999999999889883     44554 5553

This domain is found in Saccharomyces cerevisiae protein SMP2, proteins with an N-terminal lipin domain and phosphatidylinositol transfer proteins. SMP2 is involved in plasmid maintenance and respiration. Lipin proteins are involved in adipose tissue development and insulin resistance.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	128
2i33_A	258	Acid phosphatase; HAD superfamily, hydrolase; 1.57	5e-05

>2i33_A Acid phosphatase; HAD superfamily, hydrolase; 1.57A {Bacillus anthracis} PDB: 2i34_A Length = 258

 Score = 40.4 bits (93), Expect = 5e-05
 Identities = 15/106 (14%), Positives = 34/106 (32%), Gaps = 18/106 (16%)

Query: 30  GTKVLRVTNSNIYVFAYSLEFVEN-GLHSCRLDNEMQMDSREYLSRRRAILQKEGFHITG 88
           G  +  ++N        +++ +E  G      ++ +  D +E    +R  L  +   I  
Sbjct: 117 GVDIYYISNRKTNQLDATIKNLERVGAPQATKEHILLQDPKEKGKEKRRELVSQTHDIVL 176

Query: 89  LISNQMDALIGQSL-----------------GKRVFKIPNPLYYSF 117
              + +    G                    G++    PNP+Y  +
Sbjct: 177 FFGDNLSDFTGFDGKSVKDRNQAVTDSKAQFGEKFIIFPNPMYGDW 222

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	128
3ocu_A	262	Lipoprotein E; hydrolase, outer membrane; HET: NMN	99.81
3pct_A	260	Class C acid phosphatase; hydrolase, outer membran	99.78
2i33_A	258	Acid phosphatase; HAD superfamily, hydrolase; 1.57	99.29

>3ocu_A Lipoprotein E; hydrolase, outer membrane; HET: NMN; 1.35A {Haemophilus influenzae} PDB: 3ocv_A* 3ocw_A* 3ocx_A* 3ocz_A* 3ocy_A* 3sf0_A* 2hlk_A 2hll_A 3et4_A 3et5_A

Probab=99.81  E-value=5.5e-20  Score=148.93  Aligned_cols=100  Identities=14%  Similarity=0.202  Sum_probs=82.7

Q ss_pred             hHHHHHHHhcCccccccc-hh----hhHHHHHHHHHcCCCcccccCC--ceeeecCCCCCcchhhhhHHHHHHHHHcCce
Q 046635           13 LRRATDFLAQGYFNPFVG-TK----VLRVTNSNIYVFAYSLEFVENG--LHSCRLDNEMQMDSREYLSRRRAILQKEGFH   85 (128)
Q Consensus        13 ~r~~~~~~~q~~~~~~~~-~~----~~~aT~~NL~~aGY~~~~~~~~--~LiLR~~~~~~~sa~~YKS~~R~~Le~~GYr   85 (128)
                      ...+...|.+.++.+++. ++    ..++|.+||++.|++.    |+  +|+||+..       .+|+.+|++|+++||+
T Consensus       106 ~~ell~~L~~~G~ki~ivTgR~~~~~r~~T~~~L~~lGi~~----~~~~~Lilr~~~-------~~K~~~r~~l~~~Gy~  174 (262)
T 3ocu_A          106 AVEFNNYVNSHNGKVFYVTNRKDSTEKSGTIDDMKRLGFNG----VEESAFYLKKDK-------SAKAARFAEIEKQGYE  174 (262)
T ss_dssp             HHHHHHHHHHTTEEEEEEEEEETTTTHHHHHHHHHHHTCSC----CSGGGEEEESSC-------SCCHHHHHHHHHTTEE
T ss_pred             HHHHHHHHHHCCCeEEEEeCCCccchHHHHHHHHHHcCcCc----ccccceeccCCC-------CChHHHHHHHHhcCCC
Confidence            345566666555555554 45    3469999999999998    88  99999753       5799999999999999


Q ss_pred             EEEEcCCccccccCCC------------------CcceeeecCCccccccchhhhh
Q 046635           86 ITGLISNQMDALIGQS------------------LGKRVFKIPNPLYYSFDHQIES  123 (128)
Q Consensus        86 IvgnIGDQwSDL~G~~------------------~g~RtFKLPNPmYyi~e~~~~~  123 (128)
                      ||++|||||+||.|++                  .|.+.|.||||||+.||.-.-+
T Consensus       175 iv~~vGD~~~Dl~~~~~~~~~~~r~a~v~~~~~~fG~~~ivlPNp~YG~we~~~~~  230 (262)
T 3ocu_A          175 IVLYVGDNLDDFGNTVYGKLNADRRAFVDQNQGKFGKTFIMLPNANYGGWEGGLAE  230 (262)
T ss_dssp             EEEEEESSGGGGCSTTTTCCHHHHHHHHHHTGGGBTTTEEECCCSSCSHHHHTTST
T ss_pred             EEEEECCChHHhccccccCCHHHHHHHHHHHHHHhCCCEEEeCCCCccchhHHhcC
Confidence            9999999999999976                  7889999999999999976543

>3pct_A Class C acid phosphatase; hydrolase, outer membrane; 1.85A {Pasteurella multocida}

Probab=99.78  E-value=2.2e-19  Score=145.24  Aligned_cols=100  Identities=12%  Similarity=0.211  Sum_probs=81.7

Q ss_pred             hHHHHHHHhcCcccccc-chh----hhHHHHHHHHHcCCCcccccCC--ceeeecCCCCCcchhhhhHHHHHHHHHcCce
Q 046635           13 LRRATDFLAQGYFNPFV-GTK----VLRVTNSNIYVFAYSLEFVENG--LHSCRLDNEMQMDSREYLSRRRAILQKEGFH   85 (128)
Q Consensus        13 ~r~~~~~~~q~~~~~~~-~~~----~~~aT~~NL~~aGY~~~~~~~~--~LiLR~~~~~~~sa~~YKS~~R~~Le~~GYr   85 (128)
                      ...+...|.+.++.+++ +++    ..+.|.+||++.|++.    |+  +|+||+..       .+|+.+|++|+++||+
T Consensus       106 ~~ell~~L~~~G~~i~ivTgR~~~~~r~~T~~~L~~lGi~~----~~~~~Lilr~~~-------~~K~~~r~~L~~~gy~  174 (260)
T 3pct_A          106 AVEFSNYVNANGGTMFFVSNRRDDVEKAGTVDDMKRLGFTG----VNDKTLLLKKDK-------SNKSVRFKQVEDMGYD  174 (260)
T ss_dssp             HHHHHHHHHHTTCEEEEEEEEETTTSHHHHHHHHHHHTCCC----CSTTTEEEESSC-------SSSHHHHHHHHTTTCE
T ss_pred             HHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHHcCcCc----cccceeEecCCC-------CChHHHHHHHHhcCCC
Confidence            34556666655555554 445    2469999999999998    77  79999742       5799999999999999


Q ss_pred             EEEEcCCccccccCCC------------------CcceeeecCCccccccchhhhh
Q 046635           86 ITGLISNQMDALIGQS------------------LGKRVFKIPNPLYYSFDHQIES  123 (128)
Q Consensus        86 IvgnIGDQwSDL~G~~------------------~g~RtFKLPNPmYyi~e~~~~~  123 (128)
                      |+++|||||+||.++.                  .|.+.|.||||||+.||.-.-+
T Consensus       175 iv~~iGD~~~Dl~~~~~~~~~~~r~a~v~~~~~~fG~~~ivlPNp~YG~we~~~~~  230 (260)
T 3pct_A          175 IVLFVGDNLNDFGDATYKKSNAERRDFVAKNSKAFGKKFIVLPNTQYGDWEGGLDK  230 (260)
T ss_dssp             EEEEEESSGGGGCGGGTTCCHHHHHHHHHHTGGGBTTTEEECCCCSCSHHHHTTCT
T ss_pred             EEEEECCChHHcCcccccCCHHHHHHHHHHHHHHhCCCEEEeCCCCcchhhHHhcC
Confidence            9999999999999965                  7889999999999999976533

>2i33_A Acid phosphatase; HAD superfamily, hydrolase; 1.57A {Bacillus anthracis} PDB: 2i34_A

Probab=99.29  E-value=5e-12  Score=99.81  Aligned_cols=100  Identities=13%  Similarity=0.186  Sum_probs=77.6

Q ss_pred             hHHHHHHHhcCcccccc-chhh---hHHHHHHHHHcCCCcccccCCceeeecCCCCCcchhhhhHHHHHHHHHcCceEEE
Q 046635           13 LRRATDFLAQGYFNPFV-GTKV---LRVTNSNIYVFAYSLEFVENGLHSCRLDNEMQMDSREYLSRRRAILQKEGFHITG   88 (128)
Q Consensus        13 ~r~~~~~~~q~~~~~~~-~~~~---~~aT~~NL~~aGY~~~~~~~~~LiLR~~~~~~~sa~~YKS~~R~~Le~~GYrIvg   88 (128)
                      .+.+...|.+-++..++ +++-   .+.+.++|...|++.  +++..++++++..       +|...|..+++.|+.|+.
T Consensus       106 ~~e~L~~L~~~Gi~i~iaTnr~~~~~~~~~~~L~~~Gl~~--v~~~~vi~~~~~~-------~K~~~~~~~~~~~~~~~l  176 (258)
T 2i33_A          106 SIDFLKYTESKGVDIYYISNRKTNQLDATIKNLERVGAPQ--ATKEHILLQDPKE-------KGKEKRRELVSQTHDIVL  176 (258)
T ss_dssp             HHHHHHHHHHTTCEEEEEEEEEGGGHHHHHHHHHHHTCSS--CSTTTEEEECTTC-------CSSHHHHHHHHHHEEEEE
T ss_pred             HHHHHHHHHHCCCEEEEEcCCchhHHHHHHHHHHHcCCCc--CCCceEEECCCCC-------CCcHHHHHHHHhCCCceE
Confidence            34566666555555544 4443   568999999999982  3388999986642       566667778888999999


Q ss_pred             EcCCccccccCCC-----------------CcceeeecCCccccccchhh
Q 046635           89 LISNQMDALIGQS-----------------LGKRVFKIPNPLYYSFDHQI  121 (128)
Q Consensus        89 nIGDQwSDL~G~~-----------------~g~RtFKLPNPmYyi~e~~~  121 (128)
                      .|||+++|+.+..                 +|.++|+||||||..||.=.
T Consensus       177 ~VGDs~~Di~aA~~~~~~~r~a~v~~~~~~aG~~~i~lpn~~y~~w~~~~  226 (258)
T 2i33_A          177 FFGDNLSDFTGFDGKSVKDRNQAVTDSKAQFGEKFIIFPNPMYGDWEGAL  226 (258)
T ss_dssp             EEESSGGGSTTCSSCCHHHHHHHHHHTGGGBTTTEEECCCCSSSHHHHHH
T ss_pred             EeCCCHHHhcccccCCHHHHHHHHHHHHHHhcCceEECCCCCcchhhhhh
Confidence            9999999999984                 68899999999999998644

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	128
d2b82a1	209	Class B acid phosphatase, AphA {Escherichia coli [	99.02
d1ltqa1	149	Polynucleotide kinase, phosphatase domain {Bacteri	95.7

>d2b82a1 c.108.1.12 (A:4-212) Class B acid phosphatase, AphA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Class B acid phosphatase, AphA
domain: Class B acid phosphatase, AphA
species: Escherichia coli [TaxId: 562]

Probab=99.02  E-value=3.5e-11  Score=93.42  Aligned_cols=93  Identities=14%  Similarity=0.105  Sum_probs=70.4

Q ss_pred             HHHHHHHhcCccccccchh----hhHHHHHHHHH-cCCCcccccCCceeeecCCCCCcchhhhhHHHHHHHHHcCceEEE
Q 046635           14 RRATDFLAQGYFNPFVGTK----VLRVTNSNIYV-FAYSLEFVENGLHSCRLDNEMQMDSREYLSRRRAILQKEGFHITG   88 (128)
Q Consensus        14 r~~~~~~~q~~~~~~~~~~----~~~aT~~NL~~-aGY~~~~~~~~~LiLR~~~~~~~sa~~YKS~~R~~Le~~GYrIvg   88 (128)
                      ..++..+.+-++.+|+-|.    ..++|.+||.+ .|+|.  .++.+++|+...       .+|..+|+.|++  |+|+.
T Consensus        92 ~~fl~~~~~~Gv~IfyVTnR~~~~~e~T~~nL~K~lG~p~--~~~~~vll~~~~-------~~K~~rr~~Ik~--y~I~l  160 (209)
T d2b82a1          92 RQLIDMHVRRGDAIFFVTGRSPTKTETVSKTLADNFHIPA--TNMNPVIFAGDK-------PGQNTKSQWLQD--KNIRI  160 (209)
T ss_dssp             HHHHHHHHHHTCEEEEEECSCCCSSCCHHHHHHHHTTCCT--TTBCCCEECCCC-------TTCCCSHHHHHH--TTEEE
T ss_pred             HHHHHHHHHcCCeEEEEeCCchhhHHHHHHHHHHHcCCCc--ccccceEeeCCC-------CCchHHHHHHHH--cCeEE
Confidence            4455666666666665554    56699999976 89995  667889988654       258889999955  99999


Q ss_pred             EcCCccccccCC----CCcceeeecCCcccccc
Q 046635           89 LISNQMDALIGQ----SLGKRVFKIPNPLYYSF  117 (128)
Q Consensus        89 nIGDQwSDL~G~----~~g~RtFKLPNPmYyi~  117 (128)
                      .+|||||||.+.    --+.|.+++||+.|..+
T Consensus       161 ~~GD~l~Df~aA~eagi~~iRi~r~~~s~y~p~  193 (209)
T d2b82a1         161 FYGDSDNDITAARDVGARGIRILRASNSTYKPL  193 (209)
T ss_dssp             EEESSHHHHHHHHHTTCEEEECCCCTTCSSCSC
T ss_pred             EecCCHHHHhHHHHcCCCceEeeccCCCCCCCc
Confidence            999999999752    23458999999988643

>d1ltqa1 c.108.1.9 (A:153-301) Polynucleotide kinase, phosphatase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: phosphatase domain of polynucleotide kinase
domain: Polynucleotide kinase, phosphatase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=95.70  E-value=0.0064  Score=40.01  Aligned_cols=95  Identities=9%  Similarity=-0.014  Sum_probs=63.1

Q ss_pred             HHHHHHHh-cCccccccchh---hhHHHHHHHHHcCCCc---ccccCCceeeecCCCCCcchhhhhHHHHHHHHHcCceE
Q 046635           14 RRATDFLA-QGYFNPFVGTK---VLRVTNSNIYVFAYSL---EFVENGLHSCRLDNEMQMDSREYLSRRRAILQKEGFHI   86 (128)
Q Consensus        14 r~~~~~~~-q~~~~~~~~~~---~~~aT~~NL~~aGY~~---~~~~~~~LiLR~~~~~~~sa~~YKS~~R~~Le~~GYrI   86 (128)
                      ..+...|. +|+-+.+++++   ..+.|.++|...+.+.   .+.....+.+++.+ .......+|.....++...+|.|
T Consensus        42 ~~~l~~l~~~G~~Iii~T~R~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~d~~~k~~~l~~~~~~~~~i  120 (149)
T d1ltqa1          42 VELSKMYALMGYQIVVVSGRESGTKEDPTKYYRMTRKWVEDIAGVPLVMQCQREQG-DTRKDDVVKEEIFWKHIAPHFDV  120 (149)
T ss_dssp             HHHHHHHHHTTCEEEEEECSCCCCSSSTTHHHHHHHHHHHHTTCCCCSEEEECCTT-CCSCHHHHHHHHHHHHTTTTCEE
T ss_pred             HHHHHHHHhccCeEEEEecCcHHHHHHHHHHHHHHhhhhhhcCCCcEEEeeccccc-ccCCchHHHHHHHHHhccCCCce
Confidence            34444554 46666666666   3457888887643221   11224566667665 44566778999988888889999


Q ss_pred             EEEcCCccccccCC-CCcceeeec
Q 046635           87 TGLISNQMDALIGQ-SLGKRVFKI  109 (128)
Q Consensus        87 vgnIGDQwSDL~G~-~~g~RtFKL  109 (128)
                      +..|||.++|+... .+|.++|..
T Consensus       121 ~~~igD~~~dv~a~~~~Gi~~~~V  144 (149)
T d1ltqa1         121 KLAIDDRTQVVEMWRRIGVECWQV  144 (149)
T ss_dssp             EEEEECCHHHHHHHHHTTCCEEEC
T ss_pred             EEEEcCCHHHHHHHHHCCCcEEEe
Confidence            99999999999763 445555554