Citrus Sinensis ID: 046636

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100---
Protein Sequence
LNKTCELDKSSNSIKRSHDDSRFKPNEKKIPRNKVCPCGSKKKYKACCGTAAGRSSAKFAVNQTVDSKRGRKERKQGKKGEASSTLSACVSDGGPPDMGALCI
Secondary Structure (PSIPRED)
cccHHHHHHHcccccccccccccccccccccccccccccccHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHcccccccHHHccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccEEcccccccccccccccccccccccccccccccccccccHHccccccccccHHHHHHccHHcccccHHHccccccccccccccccccccccccEEEEc
Coil and Loop (DISEMBL)
lnktceldkssnsikrshddsrfkpnekkiprnkvcpcgskkkykaccgtaagrssakfavnqtvdskrgrkerkqgkkgeasstlsacvsdggppdmgalci
Flexible Loop (DISEMBL)
lnktceldkssnsikrshddsrfkpnekkiprnkvcpcgskKKYKACCGTaagrssakfavnqtvdskrgrkerkqgkkgeasstlsacvsdggppdmgalci
Low Complexity Region (SEG)
LNKTCELDKSSNSIKRSHDDSRFKPNEKKIPRNKVCPCGSKKKYKACCGTAAGRSSAKFAVNQTVDSkrgrkerkqgkkgeASSTLSACVSDGGPPDMGALCI
Disordered region (IsUnstruct)
***********************************CPCGSKKKYKACCGTA****************************************************
Disordered Region (DISOPRED)
************************************PCGSKKKYKACCGTAA*****************************************GPPDMGALCI
Disordered Region (DISEMBL)
************************PNEKKIPRNKVCPCGSKKKYKACCGTAAGRSSAKFAVN************************SACVSDGGPPDMGALCI
Disordered Region (DISPRO)
*****************************IPRNKVCPCGSKKKYKACCGTA******************************************GPPDMGALCI
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
LNKTCELDKSSNSIKRSHDDSRFKPNEKKIPRNKVCPCGSKKKYKACCGTAAGRSSAKFAVNQTVDSKRGRKERKQGKKGEASSTLSACVSDGGPPDMGALCI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	103	2.2.26 [Sep-21-2011]
Q30RR0	857	Protein translocase subun	yes	no	0.388	0.046	0.525	3e-06
A7GYW4	869	Protein translocase subun	yes	no	0.252	0.029	0.730	1e-05
A3DF88	910	Protein translocase subun	yes	no	0.466	0.052	0.42	2e-05
A7ZD16	868	Protein translocase subun	yes	no	0.320	0.038	0.617	3e-05
B1H018	860	Protein translocase subun	yes	no	0.398	0.047	0.463	3e-05
Q97F94	839	Protein translocase subun	yes	no	0.320	0.039	0.583	4e-05
A0LCX0	901	Protein translocase subun	yes	no	0.262	0.029	0.629	4e-05
A8EUE3	872	Protein translocase subun	yes	no	0.456	0.053	0.425	5e-05
B1IE50	835	Protein translocase subun	yes	no	0.504	0.062	0.392	6e-05
Q5WW88	896	Protein translocase subun	yes	no	0.271	0.031	0.678	7e-05

>sp|Q30RR0|SECA_SULDN Protein translocase subunit SecA OS=Sulfurimonas denitrificans (strain ATCC 33889 / DSM 1251) GN=secA PE=3 SV=1

 Score = 50.4 bits (119), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 21/40 (52%), Positives = 26/40 (65%)

Query: 13  SIKRSHDDSRFKPNEKKIPRNKVCPCGSKKKYKACCGTAA 52
           SI+ +H  S  +   KKI RN +CPCGS KKYK CCG + 
Sbjct: 810 SIQFNHYQSEMENESKKISRNDLCPCGSGKKYKLCCGKSG 849

Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane.
Sulfurimonas denitrificans (strain ATCC 33889 / DSM 1251) (taxid: 326298)

>sp|A7GYW4|SECA_CAMC5 Protein translocase subunit SecA OS=Campylobacter curvus (strain 525.92) GN=secA PE=3 SV=1

 Score = 48.5 bits (114), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/26 (73%), Positives = 20/26 (76%)

Query: 27  EKKIPRNKVCPCGSKKKYKACCGTAA 52
           EKKIPRN  CPCGS KKYK CCG + 
Sbjct: 837 EKKIPRNSPCPCGSGKKYKDCCGKSG 862

Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane.

Campylobacter curvus (strain 525.92) (taxid: 360105)

>sp|A3DF88|SECA_CLOTH Protein translocase subunit SecA OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237) GN=secA PE=3 SV=1

 Score = 47.8 bits (112), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/50 (42%), Positives = 29/50 (58%), Gaps = 2/50 (4%)

Query: 2   NKTCELDKSSNSIKRSHDDSRFKP--NEKKIPRNKVCPCGSKKKYKACCG 49
           N+  +  K +  +  SH +   KP     K+ RN++CPCGS KKYK CCG
Sbjct: 858 NRMPQRQKVAEPVTASHGEEVRKPVVKRNKVGRNELCPCGSGKKYKKCCG 907

Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane.

Clostridium thermocellum (strain ATCC 27405 / DSM 1237) (taxid: 203119)

>sp|A7ZD16|SECA_CAMC1 Protein translocase subunit SecA OS=Campylobacter concisus (strain 13826) GN=secA PE=3 SV=1

 Score = 47.0 bits (110), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 21/34 (61%), Positives = 23/34 (67%), Gaps = 1/34 (2%)

Query: 19  DDSRFKPNEKKIPRNKVCPCGSKKKYKACCGTAA 52
           +D  F P EKKIPRN  CPCGS KKYK C G + 
Sbjct: 829 EDENFTP-EKKIPRNAPCPCGSGKKYKDCHGKSG 861

Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane.

Campylobacter concisus (strain 13826) (taxid: 360104)

>sp|B1H018|SECA_UNCTG Protein translocase subunit SecA OS=Uncultured termite group 1 bacterium phylotype Rs-D17 GN=secA PE=3 SV=1

 Score = 47.0 bits (110), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 19/41 (46%), Positives = 25/41 (60%)

Query: 9   KSSNSIKRSHDDSRFKPNEKKIPRNKVCPCGSKKKYKACCG 49
           +++NS  R +D  +      KI RN  CPCGS KK+K CCG
Sbjct: 819 QTTNSDFRKNDGKKINKGSNKIGRNDQCPCGSGKKFKKCCG 859

Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane.

Uncultured termite group 1 bacterium phylotype Rs-D17 (taxid: 471821)

>sp|Q97F94|SECA_CLOAB Protein translocase subunit SecA OS=Clostridium acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 / LMG 5710 / VKM B-1787) GN=secA PE=3 SV=1

 Score = 47.0 bits (110), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 21/36 (58%), Positives = 25/36 (69%), Gaps = 3/36 (8%)

Query: 20  DSRFKP---NEKKIPRNKVCPCGSKKKYKACCGTAA 52
           D++ +P    EKKI RN +CPCGS KKYK CCG  A
Sbjct: 804 DTKKEPVRRKEKKIGRNDLCPCGSGKKYKDCCGRRA 839

Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane.

Clostridium acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 / LMG 5710 / VKM B-1787) (taxid: 272562)

>sp|A0LCX0|SECA1_MAGSM Protein translocase subunit SecA 1 OS=Magnetococcus sp. (strain MC-1) GN=secA1 PE=3 SV=1

 Score = 46.6 bits (109), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 17/27 (62%), Positives = 21/27 (77%)

Query: 23  FKPNEKKIPRNKVCPCGSKKKYKACCG 49
           FK + +K+ RN+ CPCGS KKYK CCG
Sbjct: 872 FKRDGEKVGRNQACPCGSGKKYKQCCG 898

Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane.

Magnetococcus sp. (strain MC-1) (taxid: 156889)

>sp|A8EUE3|SECA_ARCB4 Protein translocase subunit SecA OS=Arcobacter butzleri (strain RM4018) GN=secA PE=3 SV=1

 Score = 46.6 bits (109), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 20/47 (42%), Positives = 29/47 (61%)

Query: 6   ELDKSSNSIKRSHDDSRFKPNEKKIPRNKVCPCGSKKKYKACCGTAA 52
           +++KS+  I  +      K ++KKI RN+ CPCGS  KYK CCG + 
Sbjct: 817 QMEKSTEHITTNIAQEAVKNSDKKIARNEPCPCGSGLKYKQCCGKSG 863

Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane.

Arcobacter butzleri (strain RM4018) (taxid: 367737)

>sp|B1IE50|SECA_CLOBK Protein translocase subunit SecA OS=Clostridium botulinum (strain Okra / Type B1) GN=secA PE=3 SV=1

 Score = 46.2 bits (108), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 4/56 (7%)

Query: 1   LNKTCELDKSSNSIKRSHDDSRFKPN----EKKIPRNKVCPCGSKKKYKACCGTAA 52
           + K  E +K +     ++D+   K      E +I RN +CPCGS KKYK CCG  A
Sbjct: 780 IEKAPEREKVAKETSTNYDEDSVKKQPIKKENRIGRNDMCPCGSGKKYKNCCGRMA 835

Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane.

Clostridium botulinum (strain Okra / Type B1) (taxid: 498213)

>sp|Q5WW88|SECA_LEGPL Protein translocase subunit SecA OS=Legionella pneumophila (strain Lens) GN=secA PE=3 SV=1

 Score = 45.8 bits (107), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 19/28 (67%), Positives = 21/28 (75%)

Query: 23  FKPNEKKIPRNKVCPCGSKKKYKACCGT 50
           F+  EKKI RN  CPCGS KKYKAC G+
Sbjct: 867 FRRQEKKIGRNDPCPCGSGKKYKACHGS 894

Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving both as a receptor for the preprotein-SecB complex and as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane.

Legionella pneumophila (strain Lens) (taxid: 297245)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	103
296082384	385	unnamed protein product [Vitis vinifera]	0.990	0.264	0.637	1e-28
225438775	467	PREDICTED: OTU domain-containing protein	0.980	0.216	0.613	9e-27
356565555	382	PREDICTED: OTU domain-containing protein	0.922	0.248	0.593	1e-23
449485434	381	PREDICTED: uncharacterized LOC101217362	0.970	0.262	0.534	1e-21
449448500	342	PREDICTED: uncharacterized protein LOC10	0.970	0.292	0.534	1e-21
317106691	397	JHL03K20.1 [Jatropha curcas]	1.0	0.259	0.514	6e-20
255565284	371	OTU domain-containing protein, putative	0.932	0.258	0.533	3e-19
297797661	374	hypothetical protein ARALYDRAFT_496882 [	0.776	0.213	0.539	7e-18
42573818	374	SEC-C motif-containing protein / OTU-lik	0.689	0.189	0.55	5e-17
30698282	375	SEC-C motif-containing protein / OTU-lik	0.689	0.189	0.55	5e-17

>gi|296082384|emb|CBI21389.3| unnamed protein product [Vitis vinifera]

 Score =  130 bits (326), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 65/102 (63%), Positives = 79/102 (77%)

Query: 2   NKTCELDKSSNSIKRSHDDSRFKPNEKKIPRNKVCPCGSKKKYKACCGTAAGRSSAKFAV 61
           N +C+ D SSNSI ++HDDS  + +EKKIPRN+VCPCGSKKK K CCG+ AGR S KF V
Sbjct: 284 NNSCKQDSSSNSIGQAHDDSSCRRDEKKIPRNQVCPCGSKKKCKTCCGSVAGRPSTKFLV 343

Query: 62  NQTVDSKRGRKERKQGKKGEASSTLSACVSDGGPPDMGALCI 103
           NQTVDS +GRKERKQGKKG ++  + +  S  GPPD+GAL I
Sbjct: 344 NQTVDSSKGRKERKQGKKGRSAKFVPSARSSEGPPDVGALSI 385

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225438775|ref|XP_002278347.1| PREDICTED: OTU domain-containing protein 3-like [Vitis vinifera]

 Score =  124 bits (310), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 62/101 (61%), Positives = 76/101 (75%)

Query: 2   NKTCELDKSSNSIKRSHDDSRFKPNEKKIPRNKVCPCGSKKKYKACCGTAAGRSSAKFAV 61
           N +C+ D SSNSI ++HDDS  + +EKKIPRN+VCPCGSKKK K CCG+ AGR S KF V
Sbjct: 284 NNSCKQDSSSNSIGQAHDDSSCRRDEKKIPRNQVCPCGSKKKCKTCCGSVAGRPSTKFLV 343

Query: 62  NQTVDSKRGRKERKQGKKGEASSTLSACVSDGGPPDMGALC 102
           NQTVDS +GRKERKQGKKG ++  + +  S  GPPD+  L 
Sbjct: 344 NQTVDSSKGRKERKQGKKGRSAKFVPSARSSEGPPDVFILL 384

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356565555|ref|XP_003551005.1| PREDICTED: OTU domain-containing protein 3-like [Glycine max]

 Score =  113 bits (282), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 57/96 (59%), Positives = 73/96 (76%), Gaps = 1/96 (1%)

Query: 8   DKSSNSIKRSHDDSRFKPNEKKIPRNKVCPCGSKKKYKACCGTAAGRSSAKFAVNQTVDS 67
           D+S+NS K+++  +  +PN+K IPRNKVCPCGS+KKYKACCG+A G+ SAKF V+Q  DS
Sbjct: 288 DESNNSSKKTNTYTTLQPNDK-IPRNKVCPCGSQKKYKACCGSALGKQSAKFVVHQAADS 346

Query: 68  KRGRKERKQGKKGEASSTLSACVSDGGPPDMGALCI 103
           K+G+KERKQGKKG ++        D   PDMGALCI
Sbjct: 347 KKGKKERKQGKKGISAKAEVPSEYDLVTPDMGALCI 382

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449485434|ref|XP_004157167.1| PREDICTED: uncharacterized LOC101217362 [Cucumis sativus]

 Score =  106 bits (265), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 54/101 (53%), Positives = 74/101 (73%), Gaps = 1/101 (0%)

Query: 3   KTCELDKSSNSIKRSHDDSRFKPNEKKIPRNKVCPCGSKKKYKACCGTAAGRSSAKFAVN 62
           K  E+D SS + K S + +RF+ ++K++PRNK+CPCGSKKK+KACCG+ A  SS K+ +N
Sbjct: 282 KHVEVDSSSQNTKHS-NCTRFQLDDKRVPRNKLCPCGSKKKHKACCGSVAASSSGKYIMN 340

Query: 63  QTVDSKRGRKERKQGKKGEASSTLSACVSDGGPPDMGALCI 103
           +T+DSK+ RKERK  KKG  +    +  SDG P D+GALCI
Sbjct: 341 KTIDSKKTRKERKAAKKGGPAKVEVSTGSDGLPHDLGALCI 381

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449448500|ref|XP_004142004.1| PREDICTED: uncharacterized protein LOC101217362 [Cucumis sativus]

 Score =  106 bits (265), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 54/101 (53%), Positives = 74/101 (73%), Gaps = 1/101 (0%)

Query: 3   KTCELDKSSNSIKRSHDDSRFKPNEKKIPRNKVCPCGSKKKYKACCGTAAGRSSAKFAVN 62
           K  E+D SS + K S + +RF+ ++K++PRNK+CPCGSKKK+KACCG+ A  SS K+ +N
Sbjct: 243 KHVEVDSSSQNTKHS-NCTRFQLDDKRVPRNKLCPCGSKKKHKACCGSVAASSSGKYIMN 301

Query: 63  QTVDSKRGRKERKQGKKGEASSTLSACVSDGGPPDMGALCI 103
           +T+DSK+ RKERK  KKG  +    +  SDG P D+GALCI
Sbjct: 302 KTIDSKKTRKERKAAKKGGPAKVEVSTGSDGLPHDLGALCI 342

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|317106691|dbj|BAJ53192.1| JHL03K20.1 [Jatropha curcas]

 Score =  101 bits (252), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 53/103 (51%), Positives = 71/103 (68%)

Query: 1   LNKTCELDKSSNSIKRSHDDSRFKPNEKKIPRNKVCPCGSKKKYKACCGTAAGRSSAKFA 60
           L +T + + S N  K++ + +  + ++KKIPRNK CPCGSKKKYK+CCG      SAK  
Sbjct: 295 LKETQKHEPSKNRFKQARNSTSSQADDKKIPRNKSCPCGSKKKYKSCCGAVNRAPSAKST 354

Query: 61  VNQTVDSKRGRKERKQGKKGEASSTLSACVSDGGPPDMGALCI 103
           V Q++DS++GRKERKQGKKG    + S C  + G PD+GALCI
Sbjct: 355 VEQSLDSRKGRKERKQGKKGGRPESESLCEPEDGLPDVGALCI 397

Source: Jatropha curcas

Species: Jatropha curcas

Genus: Jatropha

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255565284|ref|XP_002523634.1| OTU domain-containing protein, putative [Ricinus communis] gi|223537196|gb|EEF38829.1| OTU domain-containing protein, putative [Ricinus communis]

 Score = 99.0 bits (245), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 55/103 (53%), Positives = 67/103 (65%), Gaps = 7/103 (6%)

Query: 1   LNKTCELDKSSNSIKRSHDDSRFKPNEKKIPRNKVCPCGSKKKYKACCGTAAGRSSAKFA 60
           L  T   D S+   K ++ +S  +  +KKI RNK CPCGSKKKYKACCG    + SAKF 
Sbjct: 276 LKDTHSHDPSNGRTKPTNGNSSCQAGDKKIARNKTCPCGSKKKYKACCGAVKAKPSAKFL 335

Query: 61  VNQTVDSKRGRKERKQGKKGEASSTLSACVSDGGPPDMGALCI 103
           +NQTVDS++ +KERKQ  KG A        SDG PPD+GALCI
Sbjct: 336 INQTVDSRKVKKERKQRGKGPAE-------SDGSPPDVGALCI 371

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297797661|ref|XP_002866715.1| hypothetical protein ARALYDRAFT_496882 [Arabidopsis lyrata subsp. lyrata] gi|297312550|gb|EFH42974.1| hypothetical protein ARALYDRAFT_496882 [Arabidopsis lyrata subsp. lyrata]

 Score = 94.7 bits (234), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 48/89 (53%), Positives = 60/89 (67%), Gaps = 9/89 (10%)

Query: 15  KRSHDDSRFKPNEKKIPRNKVCPCGSKKKYKACCGTAAGRSSAKFAVNQTVDSKRGRKER 74
           K  H   R + ++KKIPRNK CPCGSKKKYK+CCGTAAGRSS K  V+QT +SK+GRK  
Sbjct: 295 KTVHAKCRSQTDDKKIPRNKTCPCGSKKKYKSCCGTAAGRSSVKLLVSQTTESKKGRKNL 354

Query: 75  KQGKKGEASSTLSACVSDGGPPDMGALCI 103
           ++G   E  + +         PD+GALCI
Sbjct: 355 RRGTLNEVEANV---------PDVGALCI 374

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42573818|ref|NP_975005.1| SEC-C motif-containing protein / OTU-like cysteine protease family protein [Arabidopsis thaliana] gi|332010927|gb|AED98310.1| SEC-C motif-containing protein / OTU-like cysteine protease family protein [Arabidopsis thaliana]

 Score = 91.7 bits (226), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 44/80 (55%), Positives = 56/80 (70%), Gaps = 9/80 (11%)

Query: 24  KPNEKKIPRNKVCPCGSKKKYKACCGTAAGRSSAKFAVNQTVDSKRGRKERKQGKKGEAS 83
           + ++KKIPRNK CPCGSKKKYK+CCGTA GRSS K  V+QT++SK+GRK  ++G   E  
Sbjct: 304 QTDDKKIPRNKTCPCGSKKKYKSCCGTATGRSSVKLLVSQTMESKKGRKNLRRGTSNEV- 362

Query: 84  STLSACVSDGGPPDMGALCI 103
                   +   PD+GALCI
Sbjct: 363 --------EANAPDVGALCI 374

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30698282|ref|NP_201518.2| SEC-C motif-containing protein / OTU-like cysteine protease family protein [Arabidopsis thaliana] gi|332010926|gb|AED98309.1| SEC-C motif-containing protein / OTU-like cysteine protease family protein [Arabidopsis thaliana] gi|407078848|gb|AFS88955.1| OTU-containing deubiquitinating enzyme OTU7 isoform i [Arabidopsis thaliana]

 Score = 91.7 bits (226), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 44/80 (55%), Positives = 56/80 (70%), Gaps = 9/80 (11%)

Query: 24  KPNEKKIPRNKVCPCGSKKKYKACCGTAAGRSSAKFAVNQTVDSKRGRKERKQGKKGEAS 83
           + ++KKIPRNK CPCGSKKKYK+CCGTA GRSS K  V+QT++SK+GRK  ++G   E  
Sbjct: 305 QTDDKKIPRNKTCPCGSKKKYKSCCGTATGRSSVKLLVSQTMESKKGRKNLRRGTSNEV- 363

Query: 84  STLSACVSDGGPPDMGALCI 103
                   +   PD+GALCI
Sbjct: 364 --------EANAPDVGALCI 375

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	103
TAIR|locus:2155588	375	AT5G67170 [Arabidopsis thalian	0.864	0.237	0.438	2.4e-14
GENEDB_PFALCIPARUM|MAL8P1.26	148	MAL8P1.26 "hypothetical protei	0.475	0.331	0.38	0.00013
UNIPROTKB|Q8IB87	148	MAL8P1.26 "Putative uncharacte	0.475	0.331	0.38	0.00013
TIGR_CMR|CHY_0162	874	CHY_0162 "preprotein transloca	0.330	0.038	0.555	0.00025
TIGR_CMR|DET_0434	952	DET_0434 "preprotein transloca	0.242	0.026	0.64	0.00095
UNIPROTKB|Q74EB5	161	GSU1048 "UPF0225 protein GSU10	0.203	0.130	0.714	0.00098
TIGR_CMR|GSU_1048	161	GSU_1048 "SEC-C motif domain p	0.203	0.130	0.714	0.00098

TAIR|locus:2155588 AT5G67170 [Arabidopsis thaliana (taxid:3702)]

 Score = 189 (71.6 bits), Expect = 2.4e-14, P = 2.4e-14
 Identities = 43/98 (43%), Positives = 55/98 (56%)

Query:     6 ELDKSSNSIKRSHDDSRFKPNEKKIPRNKVCPCGSKKKYKACCGTAAGRSSAKFAVNQTV 65
             E   S N+ +        + ++KKIPRNK CPCGSKKKYK+CCGTA GRSS K  V+QT+
Sbjct:   287 EESASGNNSETVQAKCTTQTDDKKIPRNKTCPCGSKKKYKSCCGTATGRSSVKLLVSQTM 346

Query:    66 DSXXXXXXXXXXXXXXASSTLSACVSDGGPPDMGALCI 103
             +S               S+ + A       PD+GALCI
Sbjct:   347 ESKKGRKNLRRGT----SNEVEA-----NAPDVGALCI 375

GO:0005634 "nucleus" evidence=ISM

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0008234 "cysteine-type peptidase activity" evidence=ISS

GENEDB_PFALCIPARUM|MAL8P1.26 MAL8P1.26 "hypothetical protein, conserved" [Plasmodium falciparum (taxid:5833)]

 Score = 92 (37.4 bits), Expect = 0.00013, P = 0.00013
 Identities = 19/50 (38%), Positives = 25/50 (50%)

Query:     8 DKSSNSIKRSH-DDSRFKPNEKKIPRNKVCPCGSKKKYKACCGTAAGRSS 56
             D   N ++    D ++F         NK+C CGSKKK+K CCG     SS
Sbjct:    97 DSEDNFLRYDDIDKNKFYIKGSSKYNNKLCTCGSKKKFKKCCGIIKNSSS 146

GO:0020011 "apicoplast" evidence=RCA

UNIPROTKB|Q8IB87 MAL8P1.26 "Putative uncharacterized protein" [Plasmodium falciparum 3D7 (taxid:36329)]

 Score = 92 (37.4 bits), Expect = 0.00013, P = 0.00013
 Identities = 19/50 (38%), Positives = 25/50 (50%)

Query:     8 DKSSNSIKRSH-DDSRFKPNEKKIPRNKVCPCGSKKKYKACCGTAAGRSS 56
             D   N ++    D ++F         NK+C CGSKKK+K CCG     SS
Sbjct:    97 DSEDNFLRYDDIDKNKFYIKGSSKYNNKLCTCGSKKKFKKCCGIIKNSSS 146

GO:0020011 "apicoplast" evidence=RCA

TIGR_CMR|CHY_0162 CHY_0162 "preprotein translocase, SecA subunit" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 102 (41.0 bits), Expect = 0.00025, P = 0.00025
 Identities = 20/36 (55%), Positives = 23/36 (63%)

Query:    16 RSHDDSRFKP--NEKKIPRNKVCPCGSKKKYKACCG 49
             R  ++   KP   E+KI RN  CPCGS KKYK CCG
Sbjct:   836 RYQEEGPKKPYRREQKIGRNDPCPCGSGKKYKKCCG 871

GO:0009306 "protein secretion" evidence=ISS

GO:0015450 "P-P-bond-hydrolysis-driven protein transmembrane transporter activity" evidence=ISS

TIGR_CMR|DET_0434 DET_0434 "preprotein translocase, SecA subunit" [Dehalococcoides ethenogenes 195 (taxid:243164)]

 Score = 97 (39.2 bits), Expect = 0.00095, P = 0.00095
 Identities = 16/25 (64%), Positives = 18/25 (72%)

Query:    25 PNEKKIPRNKVCPCGSKKKYKACCG 49
             P  K++ RN  CPCGS KKYK CCG
Sbjct:   927 PAAKEVGRNDPCPCGSGKKYKKCCG 951

GO:0009306 "protein secretion" evidence=ISS

GO:0015450 "P-P-bond-hydrolysis-driven protein transmembrane transporter activity" evidence=ISS

UNIPROTKB|Q74EB5 GSU1048 "UPF0225 protein GSU1048" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 85 (35.0 bits), Expect = 0.00098, P = 0.00098
 Identities = 15/21 (71%), Positives = 15/21 (71%)

Query:    29 KIPRNKVCPCGSKKKYKACCG 49
             KI RN  C CGS KKYK CCG
Sbjct:   140 KIGRNDPCTCGSGKKYKKCCG 160

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|GSU_1048 GSU_1048 "SEC-C motif domain protein" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 85 (35.0 bits), Expect = 0.00098, P = 0.00098
 Identities = 15/21 (71%), Positives = 15/21 (71%)

Query:    29 KIPRNKVCPCGSKKKYKACCG 49
             KI RN  C CGS KKYK CCG
Sbjct:   140 KIGRNDPCTCGSGKKYKKCCG 160


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.312   0.126   0.382    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      103        89   0.00091  102 3  11 23  0.38    30
                                                     29  0.50    30


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  7
  No. of states in DFA:  483 (51 KB)
  Total size of DFA:  100 KB (2072 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  9.18u 0.08s 9.26t   Elapsed:  00:00:01
  Total cpu time:  9.18u 0.08s 9.26t   Elapsed:  00:00:01
  Start:  Thu May  9 16:01:25 2013   End:  Thu May  9 16:01:26 2013

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh2_kg.8__2698__AT5G67170.2 annotation not avaliable (374 aa) (Arabidopsis lyrata)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	103
PRK05590	166	PRK05590, PRK05590, hypothetical protein; Provisio	3e-09
PRK13104	896	PRK13104, secA, preprotein translocase subunit Sec	1e-07
PRK12900	1025	PRK12900, secA, preprotein translocase subunit Sec	3e-07
PRK10396	221	PRK10396, PRK10396, hypothetical protein; Provisio	3e-06
PRK13103	913	PRK13103, secA, preprotein translocase subunit Sec	5e-06
PRK01617	154	PRK01617, PRK01617, hypothetical protein; Provisio	8e-06
PRK12904	830	PRK12904, PRK12904, preprotein translocase subunit	1e-05
COG3318	216	COG3318, COG3318, Predicted metal-binding protein	2e-05
TIGR04102	108	TIGR04102, SWIM_PBPRA1643, SWIM/SEC-C metal-bindin	2e-05
PRK13107	908	PRK13107, PRK13107, preprotein translocase subunit	3e-04
pfam02810	19	pfam02810, SEC-C, SEC-C motif	6e-04
PRK02250	166	PRK02250, PRK02250, hypothetical protein; Provisio	8e-04
COG3012	151	COG3012, COG3012, Uncharacterized protein conserve	0.001
PRK00183	157	PRK00183, PRK00183, hypothetical protein; Provisio	0.002

>gnl|CDD|235521 PRK05590, PRK05590, hypothetical protein; Provisional

 Score = 50.7 bits (122), Expect = 3e-09
 Identities = 17/24 (70%), Positives = 18/24 (75%)

Query: 26  NEKKIPRNKVCPCGSKKKYKACCG 49
           NE K+ RN  CPCGS KKYK CCG
Sbjct: 141 NENKVGRNDPCPCGSGKKYKKCCG 164

Length = 166

>gnl|CDD|183860 PRK13104, secA, preprotein translocase subunit SecA; Reviewed

 Score = 47.7 bits (113), Expect = 1e-07
 Identities = 19/34 (55%), Positives = 23/34 (67%)

Query: 17  SHDDSRFKPNEKKIPRNKVCPCGSKKKYKACCGT 50
           + +   F+  EKKI RN  CPCGS KKYKAC G+
Sbjct: 861 ASETQTFRRQEKKIGRNDPCPCGSGKKYKACHGS 894

Length = 896

>gnl|CDD|237255 PRK12900, secA, preprotein translocase subunit SecA; Reviewed

 Score = 46.3 bits (110), Expect = 3e-07
 Identities = 16/24 (66%), Positives = 16/24 (66%)

Query: 27   EKKIPRNKVCPCGSKKKYKACCGT 50
            EKK  RN  CPCGS KKYK C G 
Sbjct: 1002 EKKPGRNDPCPCGSGKKYKNCHGQ 1025

Length = 1025

>gnl|CDD|236680 PRK10396, PRK10396, hypothetical protein; Provisional

 Score = 43.6 bits (103), Expect = 3e-06
 Identities = 14/24 (58%), Positives = 17/24 (70%)

Query: 25  PNEKKIPRNKVCPCGSKKKYKACC 48
             E+K+ RN  CPCGS KK+K CC
Sbjct: 196 KAEEKVGRNDPCPCGSGKKFKQCC 219

Length = 221

>gnl|CDD|183859 PRK13103, secA, preprotein translocase subunit SecA; Reviewed

 Score = 43.0 bits (101), Expect = 5e-06
 Identities = 14/24 (58%), Positives = 18/24 (75%)

Query: 26  NEKKIPRNKVCPCGSKKKYKACCG 49
           NE+K+ RN+ C CGS KK+K C G
Sbjct: 887 NEQKLGRNEPCWCGSGKKFKHCHG 910

Length = 913

>gnl|CDD|234966 PRK01617, PRK01617, hypothetical protein; Provisional

 Score = 41.6 bits (98), Expect = 8e-06
 Identities = 13/18 (72%), Positives = 14/18 (77%)

Query: 32  RNKVCPCGSKKKYKACCG 49
           RN  CPCGS KK+K CCG
Sbjct: 136 RNDPCPCGSGKKFKKCCG 153

Length = 154

>gnl|CDD|237259 PRK12904, PRK12904, preprotein translocase subunit SecA; Reviewed

 Score = 42.0 bits (100), Expect = 1e-05
 Identities = 11/14 (78%), Positives = 11/14 (78%)

Query: 36  CPCGSKKKYKACCG 49
           CPCGS KKYK C G
Sbjct: 814 CPCGSGKKYKHCHG 827

Length = 830

>gnl|CDD|225855 COG3318, COG3318, Predicted metal-binding protein related to the C-terminal domain of SecA [General function prediction only]

 Score = 41.4 bits (97), Expect = 2e-05
 Identities = 15/23 (65%), Positives = 17/23 (73%)

Query: 27  EKKIPRNKVCPCGSKKKYKACCG 49
           E+K  RN  CPCGS KK+K CCG
Sbjct: 193 EEKTGRNDPCPCGSGKKFKQCCG 215

Length = 216

>gnl|CDD|200353 TIGR04102, SWIM_PBPRA1643, SWIM/SEC-C metal-binding motif protein, PBPRA1643 family

 Score = 39.6 bits (93), Expect = 2e-05
 Identities = 16/23 (69%), Positives = 16/23 (69%)

Query: 27  EKKIPRNKVCPCGSKKKYKACCG 49
           EK   RN  CPCGS KKYK CCG
Sbjct: 86  EKTPNRNDPCPCGSGKKYKKCCG 108

Members of this protein family have a SWIM, or SEC-C, domain (see pfam02810), a 21-amino acid putative Zn-binding domain that is shared with SecA, plant MuDR transposases, etc. This small protein family of unknown function occurs primarily in marine bacteria. Length = 108

>gnl|CDD|183863 PRK13107, PRK13107, preprotein translocase subunit SecA; Reviewed

 Score = 37.7 bits (87), Expect = 3e-04
 Identities = 13/21 (61%), Positives = 15/21 (71%)

Query: 29  KIPRNKVCPCGSKKKYKACCG 49
           K+ RN  CPCGS +KYK C G
Sbjct: 885 KVGRNDPCPCGSGRKYKQCHG 905

Length = 908

>gnl|CDD|202406 pfam02810, SEC-C, SEC-C motif

 Score = 33.9 bits (79), Expect = 6e-04
 Identities = 14/18 (77%), Positives = 14/18 (77%)

Query: 32 RNKVCPCGSKKKYKACCG 49
          RN  CPCGS KKYK CCG
Sbjct: 1  RNDPCPCGSGKKYKKCCG 18

The SEC-C motif found in the C-terminus of the SecA protein, in the middle of some SWI2 ATPases and also solo in several proteins. The motif is predicted to chelate zinc with the CXC and C[HC] pairs that constitute the most conserved feature of the motif. It is predicted to be a potential nucleic acid binding domain. Length = 19

>gnl|CDD|179393 PRK02250, PRK02250, hypothetical protein; Provisional

 Score = 36.4 bits (84), Expect = 8e-04
 Identities = 13/22 (59%), Positives = 14/22 (63%)

Query: 28  KKIPRNKVCPCGSKKKYKACCG 49
            K  RN  C CGS KK+K CCG
Sbjct: 145 LKQGRNDPCICGSGKKFKKCCG 166

Length = 166

>gnl|CDD|225557 COG3012, COG3012, Uncharacterized protein conserved in bacteria [Function unknown]

 Score = 35.9 bits (83), Expect = 0.001
 Identities = 11/14 (78%), Positives = 12/14 (85%)

Query: 36  CPCGSKKKYKACCG 49
           CPCGS KK+K CCG
Sbjct: 137 CPCGSGKKFKKCCG 150

Length = 151

>gnl|CDD|166842 PRK00183, PRK00183, hypothetical protein; Provisional

 Score = 35.2 bits (81), Expect = 0.002
 Identities = 13/25 (52%), Positives = 15/25 (60%)

Query: 29  KIPRNKVCPCGSKKKYKACCGTAAG 53
           K  RN  CPCGS +K+K CC    G
Sbjct: 133 KAGRNDPCPCGSGQKFKKCCAPYLG 157

Length = 157

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	103
PRK00183	157	hypothetical protein; Provisional	98.97
PRK01617	154	hypothetical protein; Provisional	98.93
PF02810	21	SEC-C: SEC-C motif; InterPro: IPR004027 The SEC-C	98.82
PRK10396	221	hypothetical protein; Provisional	98.78
PRK01752	156	hypothetical protein; Provisional	98.69
PRK13103	913	secA preprotein translocase subunit SecA; Reviewed	98.52
PRK02250	166	hypothetical protein; Provisional	98.43
COG3318	216	Predicted metal-binding protein related to the C-t	98.38
PRK13107	908	preprotein translocase subunit SecA; Reviewed	98.37
PRK12900	1025	secA preprotein translocase subunit SecA; Reviewed	98.35
PRK12318	291	methionine aminopeptidase; Provisional	98.24
PRK05590	166	hypothetical protein; Provisional	98.22
COG3012	151	Uncharacterized protein conserved in bacteria [Fun	98.05
PRK13104	896	secA preprotein translocase subunit SecA; Reviewed	97.96
PRK12901	1112	secA preprotein translocase subunit SecA; Reviewed	97.75
PRK04233	129	hypothetical protein; Provisional	96.92
COG0653	822	SecA Preprotein translocase subunit SecA (ATPase,	96.58
PRK01842	149	hypothetical protein; Provisional	96.42
PRK01752	156	hypothetical protein; Provisional	96.36
PRK12904	830	preprotein translocase subunit SecA; Reviewed	96.34
PRK01617	154	hypothetical protein; Provisional	96.1
PRK02250	166	hypothetical protein; Provisional	96.02
PRK00183	157	hypothetical protein; Provisional	95.8
COG3318	216	Predicted metal-binding protein related to the C-t	92.08
COG3012	151	Uncharacterized protein conserved in bacteria [Fun	90.18

>PRK00183 hypothetical protein; Provisional

Probab=98.97  E-value=1.9e-10  Score=85.61  Aligned_cols=25  Identities=48%  Similarity=1.026  Sum_probs=22.2

Q ss_pred             CCCCCCCccccCCcchhhhhcCccc
Q 046636           28 KKIPRNKVCPCGSKKKYKACCGTAA   52 (103)
Q Consensus        28 ~kigRNd~C~CGSGKKyKkCh~~~~   52 (103)
                      .++|||||||||||+|||+||+...
T Consensus       132 ~kvgRNdpCpCGSGkKyKkCCg~~~  156 (157)
T PRK00183        132 LKAGRNDPCPCGSGQKFKKCCAPYL  156 (157)
T ss_pred             CCCCCCCCCcCCCCHHHHHhccccc
Confidence            4589999999999999999998753

>PRK01617 hypothetical protein; Provisional

Probab=98.93  E-value=3.2e-10  Score=83.92  Aligned_cols=23  Identities=57%  Similarity=1.298  Sum_probs=21.0

Q ss_pred             CCCCCCCccccCCcchhhhhcCc
Q 046636           28 KKIPRNKVCPCGSKKKYKACCGT   50 (103)
Q Consensus        28 ~kigRNd~C~CGSGKKyKkCh~~   50 (103)
                      .++|||||||||||+|||+||++
T Consensus       132 ~~~grN~pCpCgSgkK~K~Ccg~  154 (154)
T PRK01617        132 PQFGRNDPCPCGSGKKFKKCCGQ  154 (154)
T ss_pred             CcCCCCCccccCCCcchhhhccC
Confidence            45899999999999999999974

>PF02810 SEC-C: SEC-C motif; InterPro: IPR004027 The SEC-C motif found in the C terminus of the SecA protein, in the middle of some SWI2 ATPases and also solo in several proteins

Probab=98.82  E-value=1.3e-09  Score=57.42  Aligned_cols=20  Identities=70%  Similarity=1.499  Sum_probs=18.4

Q ss_pred             CCCccccCCcchhhhhcCcc
Q 046636           32 RNKVCPCGSKKKYKACCGTA   51 (103)
Q Consensus        32 RNd~C~CGSGKKyKkCh~~~   51 (103)
                      ||++||||||++|+.||+..
T Consensus         1 ~n~~CpCgSg~~y~~CC~~~   20 (21)
T PF02810_consen    1 RNDPCPCGSGKKYKDCCGPY   20 (21)
T ss_dssp             TTSBTTTSCSSBHHHCTTHC
T ss_pred             CCCcCcCCCCchHHHhCccc
Confidence            79999999999999999854

The motif is predicted to chelate zinc with the CXC and C[HC] pairs that constitute the most conserved feature of the motif. It is predicted to be a potential nucleic acid binding domain.; PDB: 1OZB_J 1TM6_A 2I9W_A 2JQ5_A.

>PRK10396 hypothetical protein; Provisional

Probab=98.78  E-value=2.6e-09  Score=81.46  Aligned_cols=31  Identities=45%  Similarity=0.858  Sum_probs=27.6

Q ss_pred             CCCcccCCCCCCCCCccccCCcchhhhhcCc
Q 046636           20 DSRFKPNEKKIPRNKVCPCGSKKKYKACCGT   50 (103)
Q Consensus        20 ~~~~~~~~~kigRNd~C~CGSGKKyKkCh~~   50 (103)
                      ..++++...+++||+||+||||||||+||+.
T Consensus       191 ~~~~~~~~~~~~rnd~c~cgsgkk~k~c~~~  221 (221)
T PRK10396        191 VQQPIKAEEKVGRNDPCPCGSGKKFKQCCLH  221 (221)
T ss_pred             ccCCccccCCCCCCCCCCCCCCCEeeecCCC
Confidence            3577888889999999999999999999973

>PRK01752 hypothetical protein; Provisional

Probab=98.69  E-value=6.1e-09  Score=77.50  Aligned_cols=23  Identities=43%  Similarity=0.940  Sum_probs=21.0

Q ss_pred             CCCCCCCccccCCcchhhhhcCc
Q 046636           28 KKIPRNKVCPCGSKKKYKACCGT   50 (103)
Q Consensus        28 ~kigRNd~C~CGSGKKyKkCh~~   50 (103)
                      .++|||+|||||||+|||+||+.
T Consensus       132 ~~v~rn~pCpCgsGkK~KkCc~~  154 (156)
T PRK01752        132 PLPTMKQPCVCGSGKKFKHCCGG  154 (156)
T ss_pred             CCCCCCCcccCCCchHHHHhccc
Confidence            45899999999999999999984

>PRK13103 secA preprotein translocase subunit SecA; Reviewed

Probab=98.52  E-value=3.5e-08  Score=89.35  Aligned_cols=31  Identities=48%  Similarity=0.774  Sum_probs=28.8

Q ss_pred             CCcccCCCCCCCCCccccCCcchhhhhcCcc
Q 046636           21 SRFKPNEKKIPRNKVCPCGSKKKYKACCGTA   51 (103)
Q Consensus        21 ~~~~~~~~kigRNd~C~CGSGKKyKkCh~~~   51 (103)
                      .+|++..+++|||||||||||+|||+||+..
T Consensus       882 ~~~v~~~~k~gRNdpcpcGsGkKyK~ccgk~  912 (913)
T PRK13103        882 SAPVRNEQKLGRNEPCWCGSGKKFKHCHGQI  912 (913)
T ss_pred             CCCccCCCCCCCCCCccCCCCCEeeeecccC
Confidence            5788999999999999999999999999874

>PRK02250 hypothetical protein; Provisional

Probab=98.43  E-value=7.8e-08  Score=71.80  Aligned_cols=28  Identities=46%  Similarity=0.879  Sum_probs=24.5

Q ss_pred             CcccCCCCCCCCCccccCCcchhhhhcC
Q 046636           22 RFKPNEKKIPRNKVCPCGSKKKYKACCG   49 (103)
Q Consensus        22 ~~~~~~~kigRNd~C~CGSGKKyKkCh~   49 (103)
                      .+++...+++||+||+||||+|||+||+
T Consensus       139 ~~~~~~~k~~rn~~c~cgs~kk~k~c~~  166 (166)
T PRK02250        139 NQSVSSLKQGRNDPCICGSGKKFKKCCG  166 (166)
T ss_pred             ccccccCCCCCCCCcccCCCCEeeeccC
Confidence            3566777899999999999999999985

>COG3318 Predicted metal-binding protein related to the C-terminal domain of SecA [General function prediction only]

Probab=98.38  E-value=1.3e-07  Score=73.99  Aligned_cols=29  Identities=52%  Similarity=1.059  Sum_probs=24.7

Q ss_pred             CcccCCCCCCCCCccccCCcchhhhhcCc
Q 046636           22 RFKPNEKKIPRNKVCPCGSKKKYKACCGT   50 (103)
Q Consensus        22 ~~~~~~~kigRNd~C~CGSGKKyKkCh~~   50 (103)
                      .+.+...+.|||||||||||+|||.||+.
T Consensus       188 ~~~~~~~k~grnD~cpc~sg~k~k~cc~~  216 (216)
T COG3318         188 KPIKEEEKTGRNDPCPCGSGKKFKQCCGH  216 (216)
T ss_pred             hHhhhcCCCCCCCCCCCcccchHHHhhcC
Confidence            35566677899999999999999999973

>PRK13107 preprotein translocase subunit SecA; Reviewed

Probab=98.37  E-value=1.3e-07  Score=85.59  Aligned_cols=31  Identities=42%  Similarity=0.907  Sum_probs=28.8

Q ss_pred             CCcccCCCCCCCCCccccCCcchhhhhcCcc
Q 046636           21 SRFKPNEKKIPRNKVCPCGSKKKYKACCGTA   51 (103)
Q Consensus        21 ~~~~~~~~kigRNd~C~CGSGKKyKkCh~~~   51 (103)
                      +++++..+++|||||||||||++||.||+..
T Consensus       877 ~~~vr~~~k~gRNd~cpcgsgkk~K~c~gk~  907 (908)
T PRK13107        877 TPMIRDGEKVGRNDPCPCGSGRKYKQCHGKL  907 (908)
T ss_pred             CCccccCCCCCCCCCccCCCCceeeeecccC
Confidence            5788999999999999999999999999864

>PRK12900 secA preprotein translocase subunit SecA; Reviewed

Probab=98.35  E-value=2.1e-07  Score=85.18  Aligned_cols=31  Identities=52%  Similarity=0.849  Sum_probs=28.4

Q ss_pred             CCCcccCCCCCCCCCccccCCcchhhhhcCc
Q 046636           20 DSRFKPNEKKIPRNKVCPCGSKKKYKACCGT   50 (103)
Q Consensus        20 ~~~~~~~~~kigRNd~C~CGSGKKyKkCh~~   50 (103)
                      .++|++...+++||+|||||||++||+||+.
T Consensus       995 ~~~pvr~~~k~gRNDpCpCGSGKKyK~Ccgk 1025 (1025)
T PRK12900        995 KQQPVIAEKKPGRNDPCPCGSGKKYKNCHGQ 1025 (1025)
T ss_pred             CCCccccccCCCCCCcccCCCCCchhhhcCC
Confidence            3678899999999999999999999999974

>PRK12318 methionine aminopeptidase; Provisional

Probab=98.24  E-value=4.3e-07  Score=71.81  Aligned_cols=46  Identities=26%  Similarity=0.275  Sum_probs=31.5

Q ss_pred             CCCCCccccCCcchhhhhcCccccCchhhhh-hccccCCcccccccc
Q 046636           30 IPRNKVCPCGSKKKYKACCGTAAGRSSAKFA-VNQTVDSKRGRKERK   75 (103)
Q Consensus        30 igRNd~C~CGSGKKyKkCh~~~~~~~~~~~~-~g~~vp~~~~~K~~~   75 (103)
                      +.||||||||||+|+|.||.....-.+.... +-++-+.+-+||++.
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~IKs~~   47 (291)
T PRK12318          1 MKRNDPCWCGSGKKWKHCHYPTKPERSLENLKQLYASQYDIIIKTPE   47 (291)
T ss_pred             CCCCCCCccCCCccccccccccCccccccccchhccCCCceEECCHH
Confidence            3599999999999999999886544444433 233334444477765

>PRK05590 hypothetical protein; Provisional

Probab=98.22  E-value=6.4e-07  Score=67.75  Aligned_cols=35  Identities=51%  Similarity=1.022  Sum_probs=30.2

Q ss_pred             ccCCCCCcccCCCCCCCCCccccCCcchhhhhcCc
Q 046636           16 RSHDDSRFKPNEKKIPRNKVCPCGSKKKYKACCGT   50 (103)
Q Consensus        16 ~~~~~~~~~~~~~kigRNd~C~CGSGKKyKkCh~~   50 (103)
                      ..++.+.+++...++|||+||+||||++||.||+.
T Consensus       131 ~~~~~s~~v~akkK~GRNDPCPCGSGKKyKkc~GK  165 (166)
T PRK05590        131 KEWKKSKTVVNENKVGRNDPCPCGSGKKYKKCCGK  165 (166)
T ss_pred             HHhccCCccccCCCCCCCCCCCCCCCCchHHHhcc
Confidence            45566777888888999999999999999999975

>COG3012 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.05  E-value=1.7e-06  Score=64.63  Aligned_cols=21  Identities=57%  Similarity=1.366  Sum_probs=19.2

Q ss_pred             CCCCCCccccCCcchhhhhcCc
Q 046636           29 KIPRNKVCPCGSKKKYKACCGT   50 (103)
Q Consensus        29 kigRNd~C~CGSGKKyKkCh~~   50 (103)
                      ..+| |||+||||||||+||+.
T Consensus       131 ~~gr-dpC~CGsgkKfKkCCG~  151 (151)
T COG3012         131 PLGR-DPCPCGSGKKFKKCCGQ  151 (151)
T ss_pred             cccC-CCccCCCCchhhhccCc
Confidence            5789 99999999999999974

>PRK13104 secA preprotein translocase subunit SecA; Reviewed

Probab=97.96  E-value=2.6e-06  Score=77.33  Aligned_cols=30  Identities=63%  Similarity=1.155  Sum_probs=26.7

Q ss_pred             CcccCCCCCCCCCccccCCcchhhhhcCcc
Q 046636           22 RFKPNEKKIPRNKVCPCGSKKKYKACCGTA   51 (103)
Q Consensus        22 ~~~~~~~kigRNd~C~CGSGKKyKkCh~~~   51 (103)
                      .+++..+++|||+|||||||+|||.||+..
T Consensus       866 ~~~re~~kvGRNdpcpcGsGKKyK~c~G~~  895 (896)
T PRK13104        866 TFRRQEKKIGRNDPCPCGSGKKYKACHGSL  895 (896)
T ss_pred             cccccccCCCCCCCccCCCCCeeeeeeeee
Confidence            455788999999999999999999999864

>PRK12901 secA preprotein translocase subunit SecA; Reviewed

Probab=97.75  E-value=1.1e-05  Score=74.63  Aligned_cols=34  Identities=41%  Similarity=0.445  Sum_probs=30.6

Q ss_pred             CCCCcccCCCCCCCCCcccc-----CCcchhhhhcCccc
Q 046636           19 DDSRFKPNEKKIPRNKVCPC-----GSKKKYKACCGTAA   52 (103)
Q Consensus        19 ~~~~~~~~~~kigRNd~C~C-----GSGKKyKkCh~~~~   52 (103)
                      ...++++..+++|||+||||     |||++||+||+...
T Consensus      1064 ~~~~~vr~~~kigRNd~c~c~~~~~GsgKk~K~c~~~~~ 1102 (1112)
T PRK12901       1064 VKETPVRVEKKIGRNDPVPCQNVDGGSGKKYKFKHAENL 1102 (1112)
T ss_pred             CCCCCcccCCCCCCCCceeecccCCCCCceeeeeccccc
Confidence            34688999999999999999     99999999999765

>PRK04233 hypothetical protein; Provisional

Probab=96.92  E-value=0.00034  Score=50.75  Aligned_cols=23  Identities=35%  Similarity=0.998  Sum_probs=19.5

Q ss_pred             CCCCccccCCcchhhhhcCcccc
Q 046636           31 PRNKVCPCGSKKKYKACCGTAAG   53 (103)
Q Consensus        31 gRNd~C~CGSGKKyKkCh~~~~~   53 (103)
                      .+|.+||||||+.|..||+....
T Consensus         5 ~~~~~CPCGSg~~y~~CC~p~h~   27 (129)
T PRK04233          5 TPTDPCPCGRPADYARCCGPYHA   27 (129)
T ss_pred             CCCCCCCCcCCChHHHHhHHHHC
Confidence            46788999999999999986553

>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]

Probab=96.58  E-value=0.0008  Score=61.09  Aligned_cols=18  Identities=67%  Similarity=1.149  Sum_probs=16.1

Q ss_pred             CCCCCCCCccccCCcchhh
Q 046636           27 EKKIPRNKVCPCGSKKKYK   45 (103)
Q Consensus        27 ~~kigRNd~C~CGSGKKyK   45 (103)
                      ..++|||+||||||| |||
T Consensus       805 ~~~~~rn~~cpcgsG-kyk  822 (822)
T COG0653         805 LGKIGRNEPCPCGSG-KYK  822 (822)
T ss_pred             hccccCCCCCCCCCC-CCC
Confidence            348999999999999 997

>PRK01842 hypothetical protein; Provisional

Probab=96.42  E-value=0.0015  Score=48.62  Aligned_cols=25  Identities=40%  Similarity=1.011  Sum_probs=21.6

Q ss_pred             CCCCCCCccccCCcc----------hhhhhcCccc
Q 046636           28 KKIPRNKVCPCGSKK----------KYKACCGTAA   52 (103)
Q Consensus        28 ~kigRNd~C~CGSGK----------KyKkCh~~~~   52 (103)
                      +...+|++||||||+          .|..||+-..
T Consensus         6 ~~~~~~~~CPCgS~~~~~~~~~~~~~Y~~CC~p~h   40 (149)
T PRK01842          6 MAPARPDACPCGGAAPGAAANARAPRYAACCGRFI   40 (149)
T ss_pred             CCCCCCCCCCCCCCccccccccccccHHHHhHHHH
Confidence            456799999999999          8999998655

>PRK01752 hypothetical protein; Provisional

Probab=96.36  E-value=0.00065  Score=50.69  Aligned_cols=22  Identities=41%  Similarity=0.939  Sum_probs=18.8

Q ss_pred             CCCCccccCCcchhhhhcCccc
Q 046636           31 PRNKVCPCGSKKKYKACCGTAA   52 (103)
Q Consensus        31 gRNd~C~CGSGKKyKkCh~~~~   52 (103)
                      .-|.+||||||+.|..||+...
T Consensus         3 ~~~~~CPCGSg~~y~~CC~p~h   24 (156)
T PRK01752          3 LLLEACPCQSGKHYADCCGPFH   24 (156)
T ss_pred             CcCCCCCCcCCChHHHHHHHHh
Confidence            3578899999999999998654

>PRK12904 preprotein translocase subunit SecA; Reviewed

Probab=96.34  E-value=0.0015  Score=59.42  Aligned_cols=18  Identities=61%  Similarity=1.276  Sum_probs=16.8

Q ss_pred             CccccCCcchhhhhcCcc
Q 046636           34 KVCPCGSKKKYKACCGTA   51 (103)
Q Consensus        34 d~C~CGSGKKyKkCh~~~   51 (103)
                      +|||||||+|||.||+..
T Consensus       812 ~~c~cgsgkk~K~c~g~~  829 (830)
T PRK12904        812 DPCPCGSGKKYKHCHGRL  829 (830)
T ss_pred             CCCCCCCCcchhhhcCcC
Confidence            999999999999999864

>PRK01617 hypothetical protein; Provisional

Probab=96.10  E-value=0.0022  Score=47.58  Aligned_cols=19  Identities=42%  Similarity=1.170  Sum_probs=16.7

Q ss_pred             CccccCCcchhhhhcCccc
Q 046636           34 KVCPCGSKKKYKACCGTAA   52 (103)
Q Consensus        34 d~C~CGSGKKyKkCh~~~~   52 (103)
                      ++||||||+.|..||+...
T Consensus         3 ~~CPCGSg~~Y~~CC~p~h   21 (154)
T PRK01617          3 QLCPCGSALEYSLCCQPYL   21 (154)
T ss_pred             CCCCCCCCchHHHHhHHHh
Confidence            4899999999999998754

>PRK02250 hypothetical protein; Provisional

Probab=96.02  E-value=0.0016  Score=48.66  Aligned_cols=20  Identities=40%  Similarity=1.044  Sum_probs=17.2

Q ss_pred             CccccCCcchhhhhcCcccc
Q 046636           34 KVCPCGSKKKYKACCGTAAG   53 (103)
Q Consensus        34 d~C~CGSGKKyKkCh~~~~~   53 (103)
                      .+||||||+.|..||+....
T Consensus         2 ~~CPCgSg~~y~~CC~p~h~   21 (166)
T PRK02250          2 MSCPCGSTQTYSQCCEPIHL   21 (166)
T ss_pred             CcCCCCCCchHHHHhHHHHC
Confidence            46999999999999987553

>PRK00183 hypothetical protein; Provisional

Probab=95.80  E-value=0.0035  Score=46.87  Aligned_cols=21  Identities=43%  Similarity=1.059  Sum_probs=18.4

Q ss_pred             CCCccccCCcchhhhhcCccc
Q 046636           32 RNKVCPCGSKKKYKACCGTAA   52 (103)
Q Consensus        32 RNd~C~CGSGKKyKkCh~~~~   52 (103)
                      .|.+||||||+.|..||+...
T Consensus         2 ~~~~CPCGSg~~y~~CC~p~h   22 (157)
T PRK00183          2 SVSICPCGSGDLLDACCGRYH   22 (157)
T ss_pred             CCCCCCCcCCChHHHHhHHHH
Confidence            588999999999999988654

>COG3318 Predicted metal-binding protein related to the C-terminal domain of SecA [General function prediction only]

Probab=92.08  E-value=0.038  Score=43.51  Aligned_cols=21  Identities=48%  Similarity=0.801  Sum_probs=18.3

Q ss_pred             CCCCCCCccccCCc-chhhhhc
Q 046636           28 KKIPRNKVCPCGSK-KKYKACC   48 (103)
Q Consensus        28 ~kigRNd~C~CGSG-KKyKkCh   48 (103)
                      .+..||++|||+|+ ++|+.||
T Consensus         2 ~k~~~n~~~p~~s~~kky~q~~   23 (216)
T COG3318           2 GKLNENDLCPCLSALKKYKQDG   23 (216)
T ss_pred             CcccccccCccchhHHHHHHHh
Confidence            35789999999999 9999964

>COG3012 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=90.18  E-value=0.079  Score=39.85  Aligned_cols=19  Identities=47%  Similarity=1.298  Sum_probs=17.0

Q ss_pred             CccccCCcchhhhhcCccc
Q 046636           34 KVCPCGSKKKYKACCGTAA   52 (103)
Q Consensus        34 d~C~CGSGKKyKkCh~~~~   52 (103)
                      .+||||||..|-.||+...
T Consensus         3 ~~CPCGsg~~Y~~CC~p~h   21 (151)
T COG3012           3 QLCPCGSGLEYSLCCGPYH   21 (151)
T ss_pred             CcCcCCCCChHHHhccccc
Confidence            4699999999999999865

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	103
1tf5_A	844	Preprotein translocase SECA subunit; ATPase, helic	8e-08
2i9w_A	184	Hypothetical protein; cystatin-like fold, SEC-C mo	2e-05
2jq5_A	128	SEC-C motif; structural genomics, PSI-2, structure	2e-04
1ozb_I	27	Preprotein translocase SECA subunit; zinc binding	4e-04

>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A Length = 844

 Score = 47.6 bits (114), Expect = 8e-08
 Identities = 14/33 (42%), Positives = 14/33 (42%)

Query: 17  SHDDSRFKPNEKKIPRNKVCPCGSKKKYKACCG 49
                        I RN  C CGS KKYK CCG
Sbjct: 809 KKAKKAPVRKVVDIGRNAPCHCGSGKKYKNCCG 841

>2i9w_A Hypothetical protein; cystatin-like fold, SEC-C motif fold, structural genomics, J center for structural genomics, JCSG; HET: MSE; 1.75A {Psychrobacter arcticus} SCOP: d.17.4.30 g.74.1.1 g.74.1.1 Length = 184

 Score = 40.2 bits (93), Expect = 2e-05
 Identities = 9/21 (42%), Positives = 14/21 (66%)

Query: 29  KIPRNKVCPCGSKKKYKACCG 49
            + + + C CGS +K+K CCG
Sbjct: 161 SVTQKQPCICGSGEKFKRCCG 181

>2jq5_A SEC-C motif; structural genomics, PSI-2, structure initiative, northeast structural genomics consort NESG; NMR {Rhodopseudomonas palustris} Length = 128

 Score = 36.8 bits (85), Expect = 2e-04
 Identities = 9/14 (64%), Positives = 9/14 (64%)

Query: 36 CPCGSKKKYKACCG 49
          C CGS K Y  CCG
Sbjct: 3  CVCGSGKTYDDCCG 16

>1ozb_I Preprotein translocase SECA subunit; zinc binding motif, protein-protein complex, protein transport; 2.80A {Haemophilus influenzae} SCOP: g.74.1.1 Length = 27

 Score = 34.0 bits (78), Expect = 4e-04
 Identities = 15/26 (57%), Positives = 18/26 (69%)

Query: 29 KIPRNKVCPCGSKKKYKACCGTAAGR 54
          +I RN+ CPCGS KKYK C G+   R
Sbjct: 1  RIGRNEPCPCGSGKKYKHCHGSRVAR 26

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	103
1ozb_I	27	Preprotein translocase SECA subunit; zinc binding	98.88
2i9w_A	184	Hypothetical protein; cystatin-like fold, SEC-C mo	98.85
1tf5_A	844	Preprotein translocase SECA subunit; ATPase, helic	97.28
2jq5_A	128	SEC-C motif; structural genomics, PSI-2, structure	95.61
2i9w_A	184	Hypothetical protein; cystatin-like fold, SEC-C mo	89.47

>1ozb_I Preprotein translocase SECA subunit; zinc binding motif, protein-protein complex, protein transport; 2.80A {Haemophilus influenzae} SCOP: g.74.1.1

Probab=98.88  E-value=7.6e-10  Score=58.31  Aligned_cols=25  Identities=60%  Similarity=1.175  Sum_probs=21.7

Q ss_pred             CCCCCccccCCcchhhhhcCccccC
Q 046636           30 IPRNKVCPCGSKKKYKACCGTAAGR   54 (103)
Q Consensus        30 igRNd~C~CGSGKKyKkCh~~~~~~   54 (103)
                      ++||++||||||++||.||+..+.+
T Consensus         2 ~grn~~cpcgsgkk~k~c~~~~~~~   26 (27)
T 1ozb_I            2 IGRNEPCPCGSGKKYKHCHGSRVAR   26 (27)
T ss_dssp             CCTTSBCTTTCSSBGGGTTTCCCC-
T ss_pred             CCCCCcccCCCchhhhhcccccccc
Confidence            5899999999999999999876644

>2i9w_A Hypothetical protein; cystatin-like fold, SEC-C motif fold, structural genomics, J center for structural genomics, JCSG; HET: MSE; 1.75A {Psychrobacter arcticus} SCOP: d.17.4.30 g.74.1.1 g.74.1.1

Probab=98.85  E-value=7.4e-10  Score=83.37  Aligned_cols=24  Identities=38%  Similarity=0.984  Sum_probs=21.6

Q ss_pred             CCCCCCCccccCCcchhhhhcCcc
Q 046636           28 KKIPRNKVCPCGSKKKYKACCGTA   51 (103)
Q Consensus        28 ~kigRNd~C~CGSGKKyKkCh~~~   51 (103)
                      .++|||||||||||+|||+||+..
T Consensus       160 ~~~grndpCpCgSGkK~KkCcg~~  183 (184)
T 2i9w_A          160 MSVTQKQPCICGSGEKFKRCCGMY  183 (184)
T ss_dssp             CCCCTTSBCTTSCSSBGGGTGGGT
T ss_pred             CCCCCCCcCcCCCCHHHHHhCcCc
Confidence            367999999999999999999853

>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A

Probab=97.28  E-value=3.8e-05  Score=68.19  Aligned_cols=23  Identities=61%  Similarity=1.210  Sum_probs=0.0

Q ss_pred             CCCCCCCccccCCcchhhhhcCc
Q 046636           28 KKIPRNKVCPCGSKKKYKACCGT   50 (103)
Q Consensus        28 ~kigRNd~C~CGSGKKyKkCh~~   50 (103)
                      .++|||+|||||||++||.||+.
T Consensus       820 ~kvGRNdpcPcGSGkKyK~c~G~  842 (844)
T 1tf5_A          820 VDIGRNAPCHCGSGKKYKNCCGR  842 (844)
T ss_dssp             -----------------------
T ss_pred             CCCCCCCCCCCCCCcchhcccCC
Confidence            56899999999999999999984

>2jq5_A SEC-C motif; structural genomics, PSI-2, structure initiative, northeast structural genomics consort NESG; NMR {Rhodopseudomonas palustris}

Probab=95.61  E-value=0.0024  Score=45.13  Aligned_cols=17  Identities=53%  Similarity=1.321  Sum_probs=15.4

Q ss_pred             cccCCcchhhhhcCccc
Q 046636           36 CPCGSKKKYKACCGTAA   52 (103)
Q Consensus        36 C~CGSGKKyKkCh~~~~   52 (103)
                      ||||||+.|..||+...
T Consensus         3 CPCGSg~~Y~~CC~p~h   19 (128)
T 2jq5_A            3 CVCGSGKTYDDCCGPLL   19 (128)
T ss_dssp             CSSSSSSCHHHHHHHHH
T ss_pred             CCCCCCchHHHhChHHH
Confidence            99999999999998754

>2i9w_A Hypothetical protein; cystatin-like fold, SEC-C motif fold, structural genomics, J center for structural genomics, JCSG; HET: MSE; 1.75A {Psychrobacter arcticus} SCOP: d.17.4.30 g.74.1.1 g.74.1.1

Probab=89.47  E-value=0.087  Score=39.36  Aligned_cols=19  Identities=32%  Similarity=0.947  Sum_probs=16.2

Q ss_pred             CccccCCc---------chhhhhcCccc
Q 046636           34 KVCPCGSK---------KKYKACCGTAA   52 (103)
Q Consensus        34 d~C~CGSG---------KKyKkCh~~~~   52 (103)
                      .+||||||         +.|..||+...
T Consensus         7 ~~CPCgsg~~~~~~~~~~~Y~~CC~p~h   34 (184)
T 2i9w_A            7 QTCPCQINPALNAVSTPLLYQDCCQPYH   34 (184)
T ss_dssp             SBCGGGCCTTCCCSSCCCBGGGTTHHHH
T ss_pred             CCCCCCCCCccccccccccHHHhhHHHH
Confidence            36999999         99999998643

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	103
d1ozbi_	26	g.74.1.1 (I:) Preprotein translocase SecA C-termin	7e-05

>d1ozbi_ g.74.1.1 (I:) Preprotein translocase SecA C-terminal domain {Haemophilus influenzae [TaxId: 727]} Length = 26

class: Small proteins
fold: Sec-C motif
superfamily: Sec-C motif
family: Sec-C motif
domain: Preprotein translocase SecA C-terminal domain
species: Haemophilus influenzae [TaxId: 727]

 Score = 35.0 bits (81), Expect = 7e-05
 Identities = 14/23 (60%), Positives = 16/23 (69%)

Query: 30 IPRNKVCPCGSKKKYKACCGTAA 52
          I RN+ CPCGS KKYK C G+  
Sbjct: 1  IGRNEPCPCGSGKKYKHCHGSRV 23

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	103
d1ozbi_	26	Preprotein translocase SecA C-terminal domain {Hae	99.34
d2i9wa3	26	Hypothetical protein Psyc2064 {Psychrobacter arcti	97.9

>d1ozbi_ g.74.1.1 (I:) Preprotein translocase SecA C-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Small proteins
fold: Sec-C motif
superfamily: Sec-C motif
family: Sec-C motif
domain: Preprotein translocase SecA C-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=99.34  E-value=1.7e-13  Score=73.44  Aligned_cols=24  Identities=58%  Similarity=1.158  Sum_probs=21.7

Q ss_pred             CCCCCccccCCcchhhhhcCcccc
Q 046636           30 IPRNKVCPCGSKKKYKACCGTAAG   53 (103)
Q Consensus        30 igRNd~C~CGSGKKyKkCh~~~~~   53 (103)
                      ++||+|||||||+|||.||+...+
T Consensus         1 igRN~~CpCgSgkkyK~C~G~~~A   24 (26)
T d1ozbi_           1 IGRNEPCPCGSGKKYKHCHGSRVA   24 (26)
T ss_dssp             CCTTSBCTTTCSSBGGGTTTCCCC
T ss_pred             CCCCCcCCCCCCccHHHcCCcccc
Confidence            589999999999999999997653

>d2i9wa3 g.74.1.1 (A:159-183) Hypothetical protein Psyc2064 {Psychrobacter arcticus [TaxId: 334543]}

class: Small proteins
fold: Sec-C motif
superfamily: Sec-C motif
family: Sec-C motif
domain: Hypothetical protein Psyc2064
species: Psychrobacter arcticus [TaxId: 334543]

Probab=97.90  E-value=2.5e-06  Score=44.64  Aligned_cols=22  Identities=41%  Similarity=1.093  Sum_probs=18.9

Q ss_pred             CCCCCccccCCcchhhhhcCcc
Q 046636           30 IPRNKVCPCGSKKKYKACCGTA   51 (103)
Q Consensus        30 igRNd~C~CGSGKKyKkCh~~~   51 (103)
                      +....||-||||.|||+||+..
T Consensus         3 ~tqkqpcicgsgekfkrccg~y   24 (26)
T d2i9wa3           3 VTQKQPCICGSGEKFKRCCGMY   24 (26)
T ss_dssp             CCTTSBCTTSCSSBGGGTGGGT
T ss_pred             ccccCCeeecCchHHHhhhhhh
Confidence            4567899999999999999853