Citrus Sinensis ID: 046677

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200--
Protein Sequence
MCHRIVANRMSAIRAKERKKLYIYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLEITLQKIHLQDSLNDQIRSEIQHMKTVLGEKIPNLGALFGLSRKSSYQDMNAPIGAVAQLLPELQLQNSYLDQQPQYDFQQQPYLGLNNFGFQNEQGECSQLQQQLLYQENPPPHDHYQMQNEQAQARQLQQQQPRF
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccHHHHcccHHHHcccccccccccccccccccccccccccccccccHHHHHHHHHccccccccHHHHcHHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccHcHHHHHcHHHHHHccHcccccccHHHHccHcccccccccccccccHHHHcccccccccccccHHHHHcHHHHHHHHHHccccc
Coil and Loop (DISEMBL)
MCHRIVANRMSAIRAKERKKLYIYMLEHKmhnlrsnsTTLTAQLTLLETESNSLDAEKAVLKHRLEITLQKIHLQDSLNDQIRSEIQHMKTVLgekipnlgalfglsrkssyqdmnapIGAVAQLLpelqlqnsyldqqpqydfqqqpylglnnfgfqneqGECSQLQQQLlyqenppphdhyqMQNEQAQARQLQQQQPRF
Flexible Loop (DISEMBL)
mchrivanrmsairakERKKLYIYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLEITLQKIHLQDSLNDQIRSEIQHMKTVLGEKIPNLGALFGLSRKSSYQDMNAPIGAVAQLLPELQLQNSYLDQQPQYDFQQQPYLGLNNFGFQNEQGECSQLQQQLLYQENPPPHDHYQMQNEQAQARQLQQQQPRF
Low Complexity Region (SEG)
MCHRIVANRMSAIRAKERKKLYIYMLEHKMHNLRSNSttltaqltlleteSNSLDAEKAVLKHRLEITLQKIHLQDSLNDQIRSEIQHMKTVLGEKIPNLGALFGLSRKSSYQDMNAPIGAVAQLLPELQLQNSYldqqpqydfqqqpylGLNNFGFQNEQGECSQLQQQLLYQENPPPHDHYqmqneqaqarqlqqqqPRF
Disordered region (IsUnstruct)
***********AIRAKERKKLYIYMLEHKMHNLRSNSTTLTAQLTLLE*******AEKAVLKHRLEITLQKIHLQDSLNDQIRSEIQHMKTVLGEKIPNLGALFGLSRKSSYQDMNAPIGAVAQLLPELQLQNSYLDQQPQYDFQQQPYLGLNNFGFQ********************************************
Disordered Region (DISOPRED)
*CHRI************RKKLYIYMLEHKMHNLRSNSTTLTAQLTLLE**********************************************************************************************************************************************************
Disordered Region (DISEMBL)
MCHRIVANRMSAIRAKERKKLYIYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLEITLQKIHLQDSLNDQIRSEIQHMKTVLGEKIPNLGALFGLSRKSSYQDMNAPIGAVAQLLPELQLQNSYLDQQPQYDFQQQPYLGLNNFGFQNEQGECSQLQQQLLYQENPPPHDHY*******************
Disordered Region (DISPRO)
*CH****NRMSAIRAKERKKLYIYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLEITLQKIHLQDSLNDQIRSEIQHMKTVLGEKI****************DM*APIGAVAQLLPELQLQNSYLDQQPQYDFQQQPYLGLNNFGFQNEQGECSQLQQQLLYQENPPPHDHYQMQNEQAQ***********
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MCHRIVANRMSAIRAKERKKLYIYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLEITLQKIHLQDSLNDQIRSEIQHMKTVLGEKIPNLGALFGLSRKSSYQDMNAPIGAVAQLLPELQLQNSYLDQQPQYDFQQQPYLGLNNFGFQNEQGECSQLQQQLLYQENPPPHDHYQMQNEQAQARQLQQQQPRF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	202	2.2.26 [Sep-21-2011]
Q04088	398	Probable transcription fa	yes	no	0.509	0.258	0.485	1e-19
Q69IL4	380	Transcription factor RF2a	yes	no	0.465	0.247	0.478	5e-18
Q6S4P4	329	Transcription factor RF2b	no	no	0.465	0.285	0.468	2e-16
Q9MA75	341	Transcription factor VIP1	no	no	0.475	0.281	0.443	4e-14

>sp|Q04088|POF21_ARATH Probable transcription factor PosF21 OS=Arabidopsis thaliana GN=POSF21 PE=2 SV=1

 Score = 96.3 bits (238), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 52/107 (48%), Positives = 72/107 (67%), Gaps = 4/107 (3%)

Query: 2   CHRIVANRMSAIRAKERKKLYIYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVL 61
             RI ANR SA R+KERK  YI+ LE K+  L++ +TTL+AQLTLL+ ++N L  E   L
Sbjct: 205 AKRIWANRQSAARSKERKTRYIFELERKVQTLQTEATTLSAQLTLLQRDTNGLTVENNEL 264

Query: 62  KHRLEITLQKIHLQDSLNDQIRSEIQHMKTVLGEKIP---NLGALFG 105
           K RL+   Q++HLQD LN+ ++ EIQH+K + G+  P   N G+ FG
Sbjct: 265 KLRLQTMEQQVHLQDELNEALKEEIQHLKVLTGQVAPSALNYGS-FG 310

Putative transcription factor with an activatory role.
Arabidopsis thaliana (taxid: 3702)

>sp|Q69IL4|RF2A_ORYSJ Transcription factor RF2a OS=Oryza sativa subsp. japonica GN=RF2a PE=1 SV=1

 Score = 90.9 bits (224), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 45/94 (47%), Positives = 65/94 (69%)

Query: 2   CHRIVANRMSAIRAKERKKLYIYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVL 61
             RI ANR SA R+KERK  YI  LE K+  L++ +TTL+AQL LL+ +++ L  E + L
Sbjct: 185 AKRIWANRQSAARSKERKMRYIAELERKVQTLQTEATTLSAQLALLQRDTSGLTTENSEL 244

Query: 62  KHRLEITLQKIHLQDSLNDQIRSEIQHMKTVLGE 95
           K RL+   Q++HLQD+LND ++SE+Q +K   G+
Sbjct: 245 KLRLQTMEQQVHLQDALNDTLKSEVQRLKVATGQ 278

Transcription factor probably involved in vascular development and shoot tissue organization. Binds to the DNA sequence 5'-CCGAGTGTGCCCCTGG-3' present in the promoter region Box II of the phloem-specific rice tungro bacilliform virus (RTBV) promoter. May regulate tissue-specific expression of the RTBV promoter and virus replication.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q6S4P4|RF2B_ORYSJ Transcription factor RF2b OS=Oryza sativa subsp. japonica GN=RF2b PE=1 SV=1

 Score = 85.9 bits (211), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 44/94 (46%), Positives = 63/94 (67%)

Query: 2   CHRIVANRMSAIRAKERKKLYIYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVL 61
             RI+ANR SA R+KERK  YI  LE K+  L++ +TTL+AQLTL + ++  L AE A L
Sbjct: 136 AKRILANRQSAARSKERKARYITELERKVQTLQTEATTLSAQLTLFQRDTTGLSAENAEL 195

Query: 62  KHRLEITLQKIHLQDSLNDQIRSEIQHMKTVLGE 95
           K RL+   Q+  L+D+LND ++ E++ +K   GE
Sbjct: 196 KIRLQAMEQQAQLRDALNDALKQELERLKLATGE 229

Transcription factor probably involved in vascular development and shoot tissue organization. Binds to the DNA sequence 5'-CCGAGTGTGCCCCTGG-3' present in the promoter region Box II of the phloem-specific rice tungro bacilliform virus (RTBV) promoter. May regulate tissue-specific expression of the RTBV promoter and virus replication.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9MA75|VIP1_ARATH Transcription factor VIP1 OS=Arabidopsis thaliana GN=VIP1 PE=1 SV=1

 Score = 78.2 bits (191), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 43/97 (44%), Positives = 64/97 (65%), Gaps = 1/97 (1%)

Query: 2   CHRIVANRMSAIRAKERKKLYIYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVL 61
             RI+ANR SA R+KERK  Y   LE K+  L++ +TTL+AQ+T+L+  ++ L+ E   L
Sbjct: 198 AKRILANRQSAARSKERKIRYTGELERKVQTLQNEATTLSAQVTMLQRGTSELNTENKHL 257

Query: 62  KHRLEITLQKIHLQDSLNDQIRSEIQHMKTVLGEKIP 98
           K RL+   Q+  L+D+LN+ +R E+  +K V GE IP
Sbjct: 258 KMRLQALEQQAELRDALNEALRDELNRLKVVAGE-IP 293

Transcription activator that binds specifically to the VIP1 response elements (VREs) DNA sequence 5'-ACNGCT-3' found in some stress genes (e.g. TRX8 and MYB44), when phosphorylated/activated by MPK3. Required for Agrobacterium VirE2 nuclear import and tumorigenicity. Promotes transient expression of T-DNA in early stages by interacting with VirE2 in complex with the T-DNA and facilitating its translocation to the nucleus, and mediates stable genetic transformation by Agrobacterium by binding H2A histone. Prevents cell differentiation and shoot formation. Limits sulfate utilization efficiency (SUE) and sulfate uptake, especially in low-sulfur conditions.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	202
224093075	408	predicted protein [Populus trichocarpa]	0.509	0.252	0.509	4e-20
449459834	416	PREDICTED: probable transcription factor	0.495	0.240	0.51	1e-19
225433978	425	PREDICTED: probable transcription factor	0.628	0.298	0.421	5e-19
255577193	425	Transcription factor RF2a, putative [Ric	0.509	0.242	0.485	5e-19
297743837	354	unnamed protein product [Vitis vinifera]	0.628	0.358	0.421	6e-19
356541142	385	PREDICTED: probable transcription factor	0.514	0.270	0.481	6e-19
356545451	357	PREDICTED: probable transcription factor	0.514	0.291	0.481	9e-19
312283007	384	unnamed protein product [Thellungiella h	0.485	0.255	0.5	2e-18
356550384	428	PREDICTED: probable transcription factor	0.514	0.242	0.485	3e-18
356557140	420	PREDICTED: probable transcription factor	0.490	0.235	0.494	4e-18

>gi|224093075|ref|XP_002309791.1| predicted protein [Populus trichocarpa] gi|222852694|gb|EEE90241.1| predicted protein [Populus trichocarpa]

 Score =  103 bits (257), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 53/104 (50%), Positives = 74/104 (71%), Gaps = 1/104 (0%)

Query: 2   CHRIVANRMSAIRAKERKKLYIYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVL 61
             RI ANR SA R+KERK  YI  LE KM  L++ +T+L+AQLTLL+ ++NSL AE + L
Sbjct: 226 AKRIWANRQSAARSKERKMRYIAELERKMQTLQTEATSLSAQLTLLQRDTNSLTAENSEL 285

Query: 62  KHRLEITLQKIHLQDSLNDQIRSEIQHMKTVLGEKIPNLGALFG 105
           K RL+   Q++HLQD+LND ++ EIQH+K + G+ +PN  +  G
Sbjct: 286 KLRLQTMEQQVHLQDALNDALKEEIQHLKVLTGQ-VPNYASFGG 328

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449459834|ref|XP_004147651.1| PREDICTED: probable transcription factor PosF21-like [Cucumis sativus] gi|449498815|ref|XP_004160642.1| PREDICTED: probable transcription factor PosF21-like [Cucumis sativus]

 Score =  102 bits (253), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 51/100 (51%), Positives = 73/100 (73%)

Query: 4   RIVANRMSAIRAKERKKLYIYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKH 63
           RI ANR SA R+KERK  YI  LE K+  L++ +T+L+AQLTLL+ ++N L AE   LK 
Sbjct: 235 RIWANRQSAARSKERKMRYIAELERKVQTLQTEATSLSAQLTLLQRDTNGLSAENNELKL 294

Query: 64  RLEITLQKIHLQDSLNDQIRSEIQHMKTVLGEKIPNLGAL 103
           RL+   Q++HLQD+LN+ ++ EIQH+K + G+ IPN G++
Sbjct: 295 RLQTMEQQVHLQDALNEALKEEIQHLKVLTGQAIPNGGSV 334

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225433978|ref|XP_002270784.1| PREDICTED: probable transcription factor PosF21 [Vitis vinifera]

 Score =  100 bits (248), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 59/140 (42%), Positives = 84/140 (60%), Gaps = 13/140 (9%)

Query: 2   CHRIVANRMSAIRAKERKKLYIYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVL 61
             RI ANR SA R+KERK  YI  LE K+  L++ +T+L+AQLTLL+ ++N L AE + L
Sbjct: 222 AKRIWANRQSAARSKERKMRYIAELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSEL 281

Query: 62  KHRLEITLQKIHLQDSLNDQIRSEIQHMKTVLGEKIPNLGALFGLSRKSSYQDMNAP--I 119
           K RL+   Q+++LQD+LND ++ EIQH+K + G+ +PN   +           MN P   
Sbjct: 282 KLRLQTMEQQVNLQDALNDALKEEIQHLKVLTGQTMPNGAPM-----------MNFPQSY 330

Query: 120 GAVAQLLPELQLQNSYLDQQ 139
           G  AQ  P  Q  ++ L  Q
Sbjct: 331 GTGAQFYPNNQAMHTLLTAQ 350

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255577193|ref|XP_002529479.1| Transcription factor RF2a, putative [Ricinus communis] gi|223531037|gb|EEF32889.1| Transcription factor RF2a, putative [Ricinus communis]

 Score = 99.8 bits (247), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 50/103 (48%), Positives = 72/103 (69%)

Query: 2   CHRIVANRMSAIRAKERKKLYIYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVL 61
             RI ANR SA R+KERK  YI  LE K+  L++ +T+L+AQLTLL+ ++N L AE + L
Sbjct: 225 AKRIWANRQSAARSKERKMRYIAELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSEL 284

Query: 62  KHRLEITLQKIHLQDSLNDQIRSEIQHMKTVLGEKIPNLGALF 104
           K RL+   Q++HLQD+LND ++ EIQH+K + G+ + N G + 
Sbjct: 285 KLRLQTMEQQVHLQDALNDALKEEIQHLKVLTGQAMANGGPMM 327

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297743837|emb|CBI36720.3| unnamed protein product [Vitis vinifera]

 Score = 99.8 bits (247), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 59/140 (42%), Positives = 84/140 (60%), Gaps = 13/140 (9%)

Query: 2   CHRIVANRMSAIRAKERKKLYIYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVL 61
             RI ANR SA R+KERK  YI  LE K+  L++ +T+L+AQLTLL+ ++N L AE + L
Sbjct: 151 AKRIWANRQSAARSKERKMRYIAELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSEL 210

Query: 62  KHRLEITLQKIHLQDSLNDQIRSEIQHMKTVLGEKIPNLGALFGLSRKSSYQDMNAP--I 119
           K RL+   Q+++LQD+LND ++ EIQH+K + G+ +PN   +           MN P   
Sbjct: 211 KLRLQTMEQQVNLQDALNDALKEEIQHLKVLTGQTMPNGAPM-----------MNFPQSY 259

Query: 120 GAVAQLLPELQLQNSYLDQQ 139
           G  AQ  P  Q  ++ L  Q
Sbjct: 260 GTGAQFYPNNQAMHTLLTAQ 279

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356541142|ref|XP_003539041.1| PREDICTED: probable transcription factor PosF21-like [Glycine max]

 Score = 99.8 bits (247), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 52/108 (48%), Positives = 74/108 (68%), Gaps = 4/108 (3%)

Query: 2   CHRIVANRMSAIRAKERKKLYIYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVL 61
             RI ANR SA R+KERK  YI  LE K+  L++ +T+L+AQLTLL+ ++  + AE + L
Sbjct: 181 AKRIWANRQSAARSKERKMRYISELERKVQTLQTEATSLSAQLTLLQRDTTGMTAENSEL 240

Query: 62  KHRLEITLQKIHLQDSLNDQIRSEIQHMKTVLGEKIPNLG----ALFG 105
           K RL+   Q++HLQD+LND ++ EIQH+K + G+ +PN G    A FG
Sbjct: 241 KLRLQTMEQQVHLQDALNDALKEEIQHLKALTGQVMPNGGPVNFASFG 288

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356545451|ref|XP_003541156.1| PREDICTED: probable transcription factor PosF21-like [Glycine max]

 Score = 99.0 bits (245), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 52/108 (48%), Positives = 75/108 (69%), Gaps = 4/108 (3%)

Query: 2   CHRIVANRMSAIRAKERKKLYIYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVL 61
             RI ANR SA R+KERK  YI  LE K+  L++ +T+L+AQLTLL+ +++ + AE + L
Sbjct: 156 AKRIWANRQSAARSKERKMRYISELERKVQTLQTEATSLSAQLTLLQRDTHGMTAENSEL 215

Query: 62  KHRLEITLQKIHLQDSLNDQIRSEIQHMKTVLGEKIPNLG----ALFG 105
           K RL+   Q++HLQD+LND ++ EIQH+K + G+ +PN G    A FG
Sbjct: 216 KLRLQTMEQQVHLQDALNDALKEEIQHLKALTGQVMPNGGPVNFASFG 263

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|312283007|dbj|BAJ34369.1| unnamed protein product [Thellungiella halophila]

 Score = 98.2 bits (243), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 49/98 (50%), Positives = 68/98 (69%)

Query: 2   CHRIVANRMSAIRAKERKKLYIYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVL 61
             RI ANR SA R+KERK  YI+ LE K+  L++ +TTL+AQLTLL+ ++N L  E   L
Sbjct: 199 AKRIWANRQSAARSKERKTRYIFELERKVQTLQTEATTLSAQLTLLQRDTNGLTVENNEL 258

Query: 62  KHRLEITLQKIHLQDSLNDQIRSEIQHMKTVLGEKIPN 99
           K RL+   Q++HLQD LN+ ++ EIQH+K + G+  PN
Sbjct: 259 KLRLQTMEQQVHLQDELNEALKEEIQHLKVLTGQAAPN 296

Source: Thellungiella halophila

Species: Eutrema halophilum

Genus: Eutrema

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356550384|ref|XP_003543567.1| PREDICTED: probable transcription factor PosF21 [Glycine max]

 Score = 97.4 bits (241), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 51/105 (48%), Positives = 76/105 (72%), Gaps = 1/105 (0%)

Query: 4   RIVANRMSAIRAKERKKLYIYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKH 63
           RI ANR SA R+KERK  YI  LE K+  L++ +T+L+AQLTLL+ ++N L++E + LK 
Sbjct: 234 RIWANRQSAARSKERKMRYIAELERKVQTLQTEATSLSAQLTLLQRDTNGLNSENSELKL 293

Query: 64  RLEITLQKIHLQDSLNDQIRSEIQHMKTVLGEKI-PNLGALFGLS 107
           RL+   Q++HLQD+LND ++ EIQH+K + G+ + PN G +  L+
Sbjct: 294 RLQTMEQQVHLQDALNDALKEEIQHLKILTGQVMAPNGGPMMKLA 338

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356557140|ref|XP_003546876.1| PREDICTED: probable transcription factor PosF21-like [Glycine max]

 Score = 97.1 bits (240), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 49/99 (49%), Positives = 71/99 (71%)

Query: 4   RIVANRMSAIRAKERKKLYIYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKH 63
           RI ANR SA R+KERK  YI  LE K+  L++ +T+L+AQLTLL+ ++N L++E   LK 
Sbjct: 233 RIWANRQSAARSKERKMRYIAELERKVQTLQTEATSLSAQLTLLQRDTNGLNSENNELKL 292

Query: 64  RLEITLQKIHLQDSLNDQIRSEIQHMKTVLGEKIPNLGA 102
           RL+   Q++HLQD+LND ++ EIQH+K + G+ +P  G 
Sbjct: 293 RLQTMEQQVHLQDALNDALKEEIQHLKILTGQAMPPNGG 331

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	202
TAIR|locus:2061340	398	AT2G31370 [Arabidopsis thalian	0.841	0.427	0.316	1.1e-16
TAIR|locus:2198856	423	AT1G06070 "AT1G06070" [Arabido	0.841	0.401	0.333	1.7e-15
TAIR|locus:2061908	367	AT2G40620 "AT2G40620" [Arabido	0.485	0.267	0.372	2.9e-12
TAIR|locus:2033123	337	bZIP52 "AT1G06850" [Arabidopsi	0.653	0.391	0.325	2.9e-11
TAIR|locus:2141826	553	AT4G38900 "AT4G38900" [Arabido	0.534	0.195	0.350	3.1e-11
TAIR|locus:2031123	341	VIP1 "VIRE2-interacting protei	0.559	0.331	0.350	5e-11
TAIR|locus:2047082	525	AT2G21230 "AT2G21230" [Arabido	0.628	0.241	0.321	9e-10

TAIR|locus:2061340 AT2G31370 [Arabidopsis thaliana (taxid:3702)]

 Score = 211 (79.3 bits), Expect = 1.1e-16, P = 1.1e-16
 Identities = 56/177 (31%), Positives = 87/177 (49%)

Query:     4 RIVANRMSAIRAKERKKLYIYMLEHKMHNLRSNSXXXXXXXXXXXXXSNSLDAEKAVLKH 63
             RI ANR SA R+KERK  YI+ LE K+  L++ +             +N L  E   LK 
Sbjct:   207 RIWANRQSAARSKERKTRYIFELERKVQTLQTEATTLSAQLTLLQRDTNGLTVENNELKL 266

Query:    64 RLEITLQKIHLQDSLNDQIRSEIQHMKTVLGEKIP---NLGALFGLSRKSSYQDMNAPIG 120
             RL+   Q++HLQD LN+ ++ EIQH+K + G+  P   N G+ FG +++  Y + N  + 
Sbjct:   267 RLQTMEQQVHLQDELNEALKEEIQHLKVLTGQVAPSALNYGS-FGSNQQQFYSN-NQSMQ 324

Query:   121 AV--AQLLPELQLQNSYXXXXXXXXXXXXXXXGLNNFGFQNEQGECSQLQQQLLYQE 175
              +  A+   +LQ+ +                       +Q +Q +  QL QQ L Q+
Sbjct:   325 TILAAKQFQQLQIHSQKQQQQQQQQQQQHQQQQQQQQQYQFQQQQMQQLMQQRLQQQ 381

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;IDA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0003677 "DNA binding" evidence=ISS

GO:0009410 "response to xenobiotic stimulus" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

TAIR|locus:2198856 AT1G06070 "AT1G06070" [Arabidopsis thaliana (taxid:3702)]

 Score = 201 (75.8 bits), Expect = 1.7e-15, P = 1.7e-15
 Identities = 59/177 (33%), Positives = 83/177 (46%)

Query:     4 RIVANRMSAIRAKERKKLYIYMLEHKMHNLRSNSXXXXXXXXXXXXXSNSLDAEKAVLKH 63
             RI ANR SA R+KERK  YI  LE K+  L++ +             +N L  E   LK 
Sbjct:   216 RIWANRQSAARSKERKMRYIAELERKVQTLQTEATSLSAQLTLLQRDTNGLGVENNELKL 275

Query:    64 RLEITLQKIHLQDSLNDQIRSEIQHMKTVLGEKIPNLGALFGLSRKSSYQDM---NAPIG 120
             R++   Q++HLQD+LND ++ E+QH+K + G+  P+ G         S Q     N  + 
Sbjct:   276 RVQTMEQQVHLQDALNDALKEEVQHLKVLTGQG-PSNGTSMNYGSFGSNQQFYPNNQSMH 334

Query:   121 AV--AQLLPELQLQNSYXXXXXXXXXXXXXXXGLNNFGFQNEQGECSQLQQQLLYQE 175
              +  AQ L +LQ+Q S                    F FQ +Q    Q QQ+L  QE
Sbjct:   335 TILAAQQLQQLQIQ-SQKQQQQQQQHQQQQQQQQQQFHFQQQQLYQLQQQQRLQQQE 390

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0009410 "response to xenobiotic stimulus" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

TAIR|locus:2061908 AT2G40620 "AT2G40620" [Arabidopsis thaliana (taxid:3702)]

 Score = 170 (64.9 bits), Expect = 2.9e-12, P = 2.9e-12
 Identities = 38/102 (37%), Positives = 57/102 (55%)

Query:     4 RIVANRMSAIRAKERKKLYIYMLEHKMHNLRSNSXXXXXXXXXXXXXSNSLDAEKAVLKH 63
             RI+ANR SA R+KERK  YI  LE K+  L++ +             +  L +E   LK 
Sbjct:   154 RIIANRQSAARSKERKARYILELERKVQTLQTEATTLSAQLSLFQRDTTGLSSENTELKL 213

Query:    64 RLEITLQKIHLQDSLNDQIRSEIQHMKTVLGEKIP----NLG 101
             RL++  Q+  L+D+LN+Q++ E++ +K   GE  P    NLG
Sbjct:   214 RLQVMEQQAKLRDALNEQLKKEVERLKFATGEVSPADAYNLG 255

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

TAIR|locus:2033123 bZIP52 "AT1G06850" [Arabidopsis thaliana (taxid:3702)]

 Score = 160 (61.4 bits), Expect = 2.9e-11, P = 2.9e-11
 Identities = 44/135 (32%), Positives = 70/135 (51%)

Query:     4 RIVANRMSAIRAKERKKLYIYMLEHKMHNLRSNSXXXXXXXXXXXXXSNSLDAEKAVLKH 63
             RI+ANR SA R+KERK  YI  LE K+ +L++ +             +N L  E   LK 
Sbjct:   154 RILANRQSAARSKERKARYIQELERKVQSLQTEATTLSAQLTLYQRDTNGLANENTELKL 213

Query:    64 RLEITLQKIHLQDSLNDQIRSEIQHMKTVLGEKIPNLGAL-FGLSR--KSSYQDMNAPIG 120
             RL+   Q+  L+++LN+ +R E++ MK   GE   N  +   G+ +   SS   M  P  
Sbjct:   214 RLQAMEQQAQLRNALNEALRKEVERMKMETGEISGNSDSFDMGMQQIQYSSSTFMAIPPY 273

Query:   121 AVAQLLPELQLQNSY 135
               +  L ++Q+ +S+
Sbjct:   274 HGSMNLHDMQMHSSF 288

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

TAIR|locus:2141826 AT4G38900 "AT4G38900" [Arabidopsis thaliana (taxid:3702)]

 Score = 164 (62.8 bits), Expect = 3.1e-11, P = 3.1e-11
 Identities = 40/114 (35%), Positives = 58/114 (50%)

Query:     4 RIVANRMSAIRAKERKKLYIYMLEHKMHNLRSNSXXXXXXXXXXXXXSNSLDAEKAVLKH 63
             RI+ANR SA R+KERK  YI  LEHK+  L++ +                L  +   LK 
Sbjct:   406 RILANRQSAARSKERKMRYIVELEHKVQTLQTEATTLSAQLTLLQRDMMGLTNQNNELKF 465

Query:    64 RLEITLQKIHLQDSLNDQIRSEIQHMKTVLGEKIPNLGALFGLSRKSSYQDMNA 117
             RL+   Q+  L+D+LN+ +  E+Q +K  +GE   N       S +S  Q +NA
Sbjct:   466 RLQAMEQQARLRDALNEALNGEVQRLKLAIGESSQNE------SERSKMQSLNA 513

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0005829 "cytosol" evidence=IDA

GO:0009410 "response to xenobiotic stimulus" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

TAIR|locus:2031123 VIP1 "VIRE2-interacting protein 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 158 (60.7 bits), Expect = 5.0e-11, P = 5.0e-11
 Identities = 40/114 (35%), Positives = 60/114 (52%)

Query:     4 RIVANRMSAIRAKERKKLYIYMLEHKMHNLRSNSXXXXXXXXXXXXXSNSLDAEKAVLKH 63
             RI+ANR SA R+KERK  Y   LE K+  L++ +             ++ L+ E   LK 
Sbjct:   200 RILANRQSAARSKERKIRYTGELERKVQTLQNEATTLSAQVTMLQRGTSELNTENKHLKM 259

Query:    64 RLEITLQKIHLQDSLNDQIRSEIQHMKTVLGEKIPNLGALFGLSRKSSYQD-MN 116
             RL+   Q+  L+D+LN+ +R E+  +K V GE     G  +  ++ SS Q  MN
Sbjct:   260 RLQALEQQAELRDALNEALRDELNRLKVVAGEIPQGNGNSYNRAQFSSQQSAMN 313

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;IDA

GO:0005634 "nucleus" evidence=ISM;IDA;IMP

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA;IDA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0045596 "negative regulation of cell differentiation" evidence=IDA

GO:0009294 "DNA mediated transformation" evidence=IDA

GO:0051170 "nuclear import" evidence=IDA

GO:0051019 "mitogen-activated protein kinase binding" evidence=IPI

GO:0008272 "sulfate transport" evidence=IMP

GO:0009970 "cellular response to sulfate starvation" evidence=IMP

GO:0009410 "response to xenobiotic stimulus" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=RCA

TAIR|locus:2047082 AT2G21230 "AT2G21230" [Arabidopsis thaliana (taxid:3702)]

 Score = 150 (57.9 bits), Expect = 9.0e-10, P = 9.0e-10
 Identities = 45/140 (32%), Positives = 74/140 (52%)

Query:     4 RIVANRMSAIRAKERKKLYIYMLEHKMHNLRSNSXXXXXXXXXXXXXSNSLDAEKAVLKH 63
             RI+ANR+SA R+KERK  Y+  LEHK+  L++ +             S  L  + + LK 
Sbjct:   376 RILANRVSAARSKERKTRYMAELEHKVQTLQTEATTLSAQLTHLQRDSMGLTNQNSELKF 435

Query:    64 RLEITLQKIHLQD------SLNDQIRSEIQHMKTVLGEKIPNLGALFGLSRKSSYQDMNA 117
             RL+   Q+  L+D      +L++++  E+Q +K V+GE  PN     G S   S   +N 
Sbjct:   436 RLQAMEQQAQLRDGMHIIKTLSEKLNEEVQRLKLVIGE--PNRRQS-GSSSSESKMSLNP 492

Query:   118 PIG---AVAQLLPELQLQNS 134
              +    +++QL  + Q+Q+S
Sbjct:   493 EMFQQLSISQLQHQ-QMQHS 511


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.318   0.133   0.379    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      202       158   0.00085  106 3  11 22  0.36    32
                                                     30  0.43    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  7
  No. of states in DFA:  553 (59 KB)
  Total size of DFA:  134 KB (2085 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  14.18u 0.15s 14.33t   Elapsed:  00:00:01
  Total cpu time:  14.18u 0.15s 14.33t   Elapsed:  00:00:01
  Start:  Thu May  9 18:19:37 2013   End:  Thu May  9 18:19:38 2013

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0009737 "response to abscisic acid stimulus" evidence=IDA

GO:0009410 "response to xenobiotic stimulus" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_Genewise1_v1.C_LG_VII0750 hypothetical protein (408 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	202
smart00338	65	BRLZ basic region leucin zipper.	99.3
PF00170	64	bZIP_1: bZIP transcription factor cAMP response el	99.25
KOG4005	292	consensus Transcription factor XBP-1 [Transcriptio	99.01
KOG4343	655	consensus bZIP transcription factor ATF6 [Transcri	98.94
PF07716	54	bZIP_2: Basic region leucine zipper; InterPro: IPR	98.93
KOG0709	472	consensus CREB/ATF family transcription factor [Tr	98.25
PF03131	92	bZIP_Maf: bZIP Maf transcription factor; InterPro:	97.71
KOG0837	279	consensus Transcriptional activator of the JUN fam	97.0
PF11559	151	ADIP: Afadin- and alpha -actinin-Binding; InterPro	96.24
PF06156	107	DUF972: Protein of unknown function (DUF972); Inte	96.05
KOG4571	294	consensus Activating transcription factor 4 [Trans	95.9
PRK13169	110	DNA replication intiation control protein YabA; Re	95.87
PF14197	69	Cep57_CLD_2: Centrosome localisation domain of PPC	95.54
PF14197	69	Cep57_CLD_2: Centrosome localisation domain of PPC	95.5
PF06005	72	DUF904: Protein of unknown function (DUF904); Inte	95.47
PF14662	193	CCDC155: Coiled-coil region of CCDC155	95.01
KOG4196	135	consensus bZIP transcription factor MafK [Transcri	94.31
COG4467	114	Regulator of replication initiation timing [Replic	94.13
KOG3119	269	consensus Basic region leucine zipper transcriptio	94.12
TIGR02449	65	conserved hypothetical protein TIGR02449. Members	93.98
PRK15422	79	septal ring assembly protein ZapB; Provisional	93.62
PRK10884	206	SH3 domain-containing protein; Provisional	93.51
COG3074	79	Uncharacterized protein conserved in bacteria [Fun	93.06
PF12325	120	TMF_TATA_bd: TATA element modulatory factor 1 TATA	92.98
PF07989	75	Microtub_assoc: Microtubule associated; InterPro:	92.87
PF10146	230	zf-C4H2: Zinc finger-containing protein ; InterPro	92.87
KOG3863	604	consensus bZIP transcription factor NRF1 [Transcri	92.66
KOG4005	292	consensus Transcription factor XBP-1 [Transcriptio	92.52
PF06005	72	DUF904: Protein of unknown function (DUF904); Inte	92.2
PF04111	314	APG6: Autophagy protein Apg6; InterPro: IPR007243	91.8
PF04102	69	SlyX: SlyX; InterPro: IPR007236 The SlyX protein h	91.56
COG1579	239	Zn-ribbon protein, possibly nucleic acid-binding [	91.53
PF08614	194	ATG16: Autophagy protein 16 (ATG16); InterPro: IPR	91.13
PF14662	193	CCDC155: Coiled-coil region of CCDC155	91.04
PRK00295	68	hypothetical protein; Provisional	90.6
PRK02793	72	phi X174 lysis protein; Provisional	90.59
PRK00736	68	hypothetical protein; Provisional	90.55
PF10224	80	DUF2205: Predicted coiled-coil protein (DUF2205);	90.55
PRK04325	74	hypothetical protein; Provisional	90.51
PF13747	89	DUF4164: Domain of unknown function (DUF4164)	90.48
PRK02119	73	hypothetical protein; Provisional	90.35
PRK10884	206	SH3 domain-containing protein; Provisional	90.0
COG2433	652	Uncharacterized conserved protein [Function unknow	89.72
TIGR02449	65	conserved hypothetical protein TIGR02449. Members	89.6
PRK04406	75	hypothetical protein; Provisional	89.38
PF08614	194	ATG16: Autophagy protein 16 (ATG16); InterPro: IPR	89.37
COG3074	79	Uncharacterized protein conserved in bacteria [Fun	88.71
PRK00846	77	hypothetical protein; Provisional	88.32
PF12325	120	TMF_TATA_bd: TATA element modulatory factor 1 TATA	87.56
PF15070	617	GOLGA2L5: Putative golgin subfamily A member 2-lik	87.54
PRK13729	475	conjugal transfer pilus assembly protein TraB; Pro	87.42
PRK15422	79	septal ring assembly protein ZapB; Provisional	87.27
KOG4807	593	consensus F-actin binding protein, regulates actin	87.04
TIGR02894	161	DNA_bind_RsfA transcription factor, RsfA family. I	86.79
PRK11637	428	AmiB activator; Provisional	86.42
PF10805	106	DUF2730: Protein of unknown function (DUF2730); In	86.36
PF02183	45	HALZ: Homeobox associated leucine zipper; InterPro	85.5
PF02403	108	Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal dom	85.38
PF04849	306	HAP1_N: HAP1 N-terminal conserved region; InterPro	84.88
PRK11637	428	AmiB activator; Provisional	84.75
PF00038	312	Filament: Intermediate filament protein; InterPro:	84.59
TIGR03752	472	conj_TIGR03752 integrating conjugative element pro	83.72
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	83.56
PF07106	169	TBPIP: Tat binding protein 1(TBP-1)-interacting pr	83.5
PF12711	86	Kinesin-relat_1: Kinesin motor; InterPro: IPR02465	83.47
KOG0239	670	consensus Kinesin (KAR3 subfamily) [Cytoskeleton]	83.46
TIGR03752	472	conj_TIGR03752 integrating conjugative element pro	83.34
PF05266	190	DUF724: Protein of unknown function (DUF724); Inte	83.15
PF10473	140	CENP-F_leu_zip: Leucine-rich repeats of kinetochor	82.69
KOG0995	581	consensus Centromere-associated protein HEC1 [Cell	82.67
PF10186	302	Atg14: UV radiation resistance protein and autopha	82.1
PF05377	55	FlaC_arch: Flagella accessory protein C (FlaC); In	81.77
PF10186	302	Atg14: UV radiation resistance protein and autopha	81.66
PF05266	190	DUF724: Protein of unknown function (DUF724); Inte	81.63
PF05911	769	DUF869: Plant protein of unknown function (DUF869)	81.19
PRK09039	343	hypothetical protein; Validated	81.17
PF08647	96	BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR01395	81.06
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	80.76
PF15294	278	Leu_zip: Leucine zipper	80.75
PF12711	86	Kinesin-relat_1: Kinesin motor; InterPro: IPR02465	80.46
PF05837	106	CENP-H: Centromere protein H (CENP-H); InterPro: I	80.2

>smart00338 BRLZ basic region leucin zipper

Probab=99.30  E-value=1.4e-11  Score=86.85  Aligned_cols=58  Identities=33%  Similarity=0.376  Sum_probs=53.6

Q ss_pred             chhhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHH
Q 046677            2 CHRIVANRMSAIRAKERKKLYIYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKA   59 (202)
Q Consensus         2 aKRiLaNReSAqRSReRKkqYI~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~   59 (202)
                      .+|++.||+||++||+||+.|+.+||.+|..|..+|..|..++..|..++..|..++.
T Consensus         7 ~rR~~rNR~aA~~~R~rKk~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~~~   64 (65)
T smart00338        7 RRRRERNREAARRSRERKKAEIEELERKVEQLEAENERLKKEIERLRRELEKLKSELE   64 (65)
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            4789999999999999999999999999999999999999999998888888777664

>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization

Probab=99.25  E-value=4.6e-11  Score=84.16  Aligned_cols=57  Identities=39%  Similarity=0.479  Sum_probs=54.3

Q ss_pred             chhhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHH
Q 046677            2 CHRIVANRMSAIRAKERKKLYIYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEK   58 (202)
Q Consensus         2 aKRiLaNReSAqRSReRKkqYI~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN   58 (202)
                      .+|+++||+||++||.||+.|+.+||.+|..|..+|..|..++..|...+..|.++|
T Consensus         7 ~~rr~rNR~AAr~~R~RKk~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e~   63 (64)
T PF00170_consen    7 ERRRERNREAARRSRQRKKQYIEELEEKVEELESENEELKKELEQLKKEIQSLKSEN   63 (64)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            368999999999999999999999999999999999999999999999999998887

; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....

>KOG4005 consensus Transcription factor XBP-1 [Transcription]

Probab=99.01  E-value=1.4e-09  Score=96.81  Aligned_cols=71  Identities=27%  Similarity=0.324  Sum_probs=67.2

Q ss_pred             CchhhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHhH
Q 046677            1 MCHRIVANRMSAIRAKERKKLYIYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLEITLQK   71 (202)
Q Consensus         1 ~aKRiLaNReSAqRSReRKkqYI~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLqsLeqq   71 (202)
                      |.||.|+||+.|+-+|.|||..++|+|..|.+|..||..|..+...|++.+.+|.++|.+|..+|+.+.+.
T Consensus        70 ~~RrKLKNRVAAQtaRDrKKaRm~eme~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le~~~~~  140 (292)
T KOG4005|consen   70 VQRRKLKNRVAAQTARDRKKARMEEMEYEIKDLTEENEILQNENDSLRAINESLLAKNHELDSELELLRQE  140 (292)
T ss_pred             HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            46899999999999999999999999999999999999999999999999999999999999999866544

>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]

Probab=98.94  E-value=1.2e-09  Score=105.49  Aligned_cols=61  Identities=30%  Similarity=0.427  Sum_probs=58.7

Q ss_pred             hhhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHH
Q 046677            3 HRIVANRMSAIRAKERKKLYIYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKH   63 (202)
Q Consensus         3 KRiLaNReSAqRSReRKkqYI~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~   63 (202)
                      .|||+||+||..||+|||.|+.-||.+++.|..||..|+++...|.+....|.+||.++|.
T Consensus       284 QRmIKNResA~~SRkKKKEy~~~Le~rLq~ll~Ene~Lk~ENatLk~qL~~l~~En~~~kv  344 (655)
T KOG4343|consen  284 QRMIKNRESACQSRKKKKEYMLGLEARLQALLSENEQLKKENATLKRQLDELVSENQRLKV  344 (655)
T ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcCccccc
Confidence            3899999999999999999999999999999999999999999999999999999999975

>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization

Probab=98.93  E-value=4.5e-09  Score=72.28  Aligned_cols=48  Identities=31%  Similarity=0.385  Sum_probs=44.3

Q ss_pred             chhhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 046677            2 CHRIVANRMSAIRAKERKKLYIYMLEHKMHNLRSNSTTLTAQLTLLETE   50 (202)
Q Consensus         2 aKRiLaNReSAqRSReRKkqYI~ELE~kVq~LQ~ENa~LsaqltlLq~~   50 (202)
                      .||. +||.||+|||.||+.|+.+||.+|..|..+|..|..+|+.|..+
T Consensus         7 ~rR~-rNr~AA~r~R~rkk~~~~~le~~~~~L~~en~~L~~~i~~L~~E   54 (54)
T PF07716_consen    7 ERRE-RNREAARRSRQRKKQREEELEQEVQELEEENEQLRQEIAQLERE   54 (54)
T ss_dssp             HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            4677 99999999999999999999999999999999999999888753

; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....

>KOG0709 consensus CREB/ATF family transcription factor [Transcription]

Probab=98.25  E-value=1.5e-06  Score=82.83  Aligned_cols=61  Identities=28%  Similarity=0.355  Sum_probs=56.0

Q ss_pred             chhhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHH
Q 046677            2 CHRIVANRMSAIRAKERKKLYIYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLK   62 (202)
Q Consensus         2 aKRiLaNReSAqRSReRKkqYI~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK   62 (202)
                      +||+|+|.+||+-||.||+.||+-||.+|..--+||.+|..++..|+..+..|-+.-+.|-
T Consensus       253 vRRKIrNK~SAQESRrkKkeYid~LE~rv~~~taeNqeL~kkV~~Le~~N~sLl~qL~klQ  313 (472)
T KOG0709|consen  253 VRRKIRNKRSAQESRRKKKEYIDGLESRVSAFTAENQELQKKVEELELSNRSLLAQLKKLQ  313 (472)
T ss_pred             HHHHHHhhhhhHHHHHhHhhHHHHHhhhhhhcccCcHHHHHHHHHHhhccHHHHHHHHHHH
Confidence            6899999999999999999999999999999999999999999998888888877766663

>PF03131 bZIP_Maf: bZIP Maf transcription factor; InterPro: IPR004826 There are several different types of Maf transcription factors with different roles in the cell

Probab=97.71  E-value=8.1e-07  Score=67.03  Aligned_cols=59  Identities=27%  Similarity=0.286  Sum_probs=49.0

Q ss_pred             chhhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHH
Q 046677            2 CHRIVANRMSAIRAKERKKLYIYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAV   60 (202)
Q Consensus         2 aKRiLaNReSAqRSReRKkqYI~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~e   60 (202)
                      +||.++||.+|+++|.||+.++.+||.++..|..+...|..+++.+..+...+...+..
T Consensus        32 ~RRr~KNR~~A~~cR~rk~~~~~~Le~e~~~l~~~~~~L~~e~~~l~~e~~~lk~~~~~   90 (92)
T PF03131_consen   32 RRRRLKNRGYAQNCRKRKLDQIEELEEEIEQLRQEIEQLQQELSELRQERDELKRKLEQ   90 (92)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHCCCCCCCCHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            47899999999999999999999999999999888888877777777666655544433

MafG and MafH are small Mafs which lack a putative transactivation domain. They behave as transcriptional repressors when they dimerize among themselves. However they also serve as transcriptional activators by dimerizing with other (usually larger) basic-zipper proteins and recruiting them to specific DNA-binding sites. Maf transcription factors contain a conserved basic region leucine zipper (bZIP) domain, which mediates their dimerization and DNA binding property. Neural retina-specific leucine zipper proteins also belong to this family. Together with the basic region, the Maf extended homology region (EHR), conserved only within the Maf family, defines the DNA binding specific to Mafs. This structure enables Mafs to make a broader area of contact with DNA and to recognise longer DNA sequences. In particular, the two residues at the beginning of helix H2 are positioned to recognise the flanking region []. Small Maf proteins heterodimerize with Fos and may act as competitive repressors of the NF2-E2 transcription factor. In mouse, Maf1 may play an early role in axial patterning. Defects in these proteins are a cause of autosomal dominant retinitis pigmentosa. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2KZ5_A 3A5T_A 1K1V_A 1SKN_P 2WT7_B 2WTY_B.

>KOG0837 consensus Transcriptional activator of the JUN family [Transcription]

Probab=97.00  E-value=0.0018  Score=58.65  Aligned_cols=45  Identities=29%  Similarity=0.361  Sum_probs=40.0

Q ss_pred             hHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046677            5 IVANRMSAIRAKERKKLYIYMLEHKMHNLRSNSTTLTAQLTLLET   49 (202)
Q Consensus         5 iLaNReSAqRSReRKkqYI~ELE~kVq~LQ~ENa~LsaqltlLq~   49 (202)
                      -+.||+.|.+||.||+.+|..||.+|..|..+|..|...+..|.+
T Consensus       211 rlrnreaa~Kcr~rkLdrisrLEdkv~~lk~~n~~L~~~l~~l~~  255 (279)
T KOG0837|consen  211 RLRNREAASKCRKRKLDRISRLEDKVKTLKIYNRDLASELSKLKE  255 (279)
T ss_pred             HhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHH
Confidence            578999999999999999999999999999999998887765443

>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch

Probab=96.24  E-value=0.13  Score=41.15  Aligned_cols=83  Identities=19%  Similarity=0.252  Sum_probs=67.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 046677           13 IRAKERKKLYIYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLEITLQKIHLQDSLNDQIRSEIQHMKTV   92 (202)
Q Consensus        13 qRSReRKkqYI~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLqsLeqq~~LkdaLnE~Lk~EvqrLK~~   92 (202)
                      -.++.|=..+-++|..++..+..++..|...+..|..+...+..+...+..+...+.....-...-+...++|+.+++..
T Consensus        44 l~~~~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~klk~~  123 (151)
T PF11559_consen   44 LQQRDRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKLKNQ  123 (151)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35677777888888888888888888888888888888888888888888888888777776667777788999999887


Q ss_pred             hcc
Q 046677           93 LGE   95 (202)
Q Consensus        93 ~ge   95 (202)
                      +..
T Consensus       124 ~~~  126 (151)
T PF11559_consen  124 LQQ  126 (151)
T ss_pred             HHH
Confidence            654

pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.

>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication

Probab=96.05  E-value=0.032  Score=43.99  Aligned_cols=50  Identities=30%  Similarity=0.265  Sum_probs=45.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHh
Q 046677           21 LYIYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLEITLQ   70 (202)
Q Consensus        21 qYI~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLqsLeq   70 (202)
                      .-+.+||..+..|-.+...|+..+..+-++++.|..||..||.+|..++.
T Consensus         8 ~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~   57 (107)
T PF06156_consen    8 DRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELEQ   57 (107)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            35789999999999999999999999999999999999999999987765

SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.

>KOG4571 consensus Activating transcription factor 4 [Transcription]

Probab=95.90  E-value=0.031  Score=51.23  Aligned_cols=45  Identities=24%  Similarity=0.282  Sum_probs=35.0

Q ss_pred             HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 046677            7 ANRMSAIRAKERKKLYIYMLEHKMHNLRSNSTTLTAQLTLLETES   51 (202)
Q Consensus         7 aNReSAqRSReRKkqYI~ELE~kVq~LQ~ENa~LsaqltlLq~~~   51 (202)
                      .|...|.|.|.||+.-.++|+.+...|+.+|.+|+.++..++++.
T Consensus       234 qnk~AAtRYRqKkRae~E~l~ge~~~Le~rN~~LK~qa~~lerEI  278 (294)
T KOG4571|consen  234 QNKAAATRYRQKKRAEKEALLGELEGLEKRNEELKDQASELEREI  278 (294)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445569999999999999999999887777777776666554443

>PRK13169 DNA replication intiation control protein YabA; Reviewed

Probab=95.87  E-value=0.042  Score=43.76  Aligned_cols=48  Identities=29%  Similarity=0.257  Sum_probs=44.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHH
Q 046677           22 YIYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLEITL   69 (202)
Q Consensus        22 YI~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLqsLe   69 (202)
                      -+..||..+..+-.+...|+..+..+-++++.|..||..||.+|..++
T Consensus         9 ~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~~   56 (110)
T PRK13169          9 ALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEELE   56 (110)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            478899999999999999999999999999999999999999998663

>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89

Probab=95.54  E-value=0.25  Score=36.20  Aligned_cols=61  Identities=21%  Similarity=0.296  Sum_probs=38.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 046677           25 MLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLEITLQKIHLQDSLNDQIRSEIQHMKTV   92 (202)
Q Consensus        25 ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLqsLeqq~~LkdaLnE~Lk~EvqrLK~~   92 (202)
                      .||..|.+|++.+..+..++...+..+..|..|+...-.+|       ...-..+..|+.|++.|+..
T Consensus         2 ~Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l-------~~a~~e~~~Lk~E~e~L~~e   62 (69)
T PF14197_consen    2 KLEAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQL-------GDAYEENNKLKEENEALRKE   62 (69)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
Confidence            46777777777777777777777666666666665554444       33344455566666666543

>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89

Probab=95.50  E-value=0.16  Score=37.29  Aligned_cols=51  Identities=16%  Similarity=0.029  Sum_probs=40.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHhH
Q 046677           21 LYIYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLEITLQK   71 (202)
Q Consensus        21 qYI~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLqsLeqq   71 (202)
                      ..++-+++++...+.++..|..+-+..-........+|..||..++.+..+
T Consensus        12 ~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~e   62 (69)
T PF14197_consen   12 NRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKE   62 (69)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456778888888888888888888888887888888888888777666544

>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation

Probab=95.47  E-value=0.39  Score=35.49  Aligned_cols=48  Identities=23%  Similarity=0.212  Sum_probs=37.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHH
Q 046677           22 YIYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLEITL   69 (202)
Q Consensus        22 YI~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLqsLe   69 (202)
                      -++.||.+|+.+-..++.|..++..|..++..|..+|.+|+.....+.
T Consensus         5 ~l~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~   52 (72)
T PF06005_consen    5 LLEQLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLK   52 (72)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence            467889999888888888888888888888888888888777665554

It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.

>PF14662 CCDC155: Coiled-coil region of CCDC155

Probab=95.01  E-value=0.24  Score=43.11  Aligned_cols=76  Identities=16%  Similarity=0.187  Sum_probs=59.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcccCCCCc
Q 046677           22 YIYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLEITLQKIHLQDSLNDQIRSEIQHMKTVLGEKIPNLG  101 (202)
Q Consensus        22 YI~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLqsLeqq~~LkdaLnE~Lk~EvqrLK~~~gei~~~~g  101 (202)
                      -|.||+.--+.|..||++|...+..+...+..|..|+..|+..+.++.+..+..    .+|.+|+..||..+..+-..++
T Consensus         9 ~v~dL~~~n~~L~~en~kL~~~ve~~ee~na~L~~e~~~L~~q~~s~Qqal~~a----K~l~eEledLk~~~~~lEE~~~   84 (193)
T PF14662_consen    9 CVEDLQLNNQKLADENAKLQRSVETAEEGNAQLAEEITDLRKQLKSLQQALQKA----KALEEELEDLKTLAKSLEEENR   84 (193)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Confidence            477888888888888889999999999999999999999999888885444433    4567788889988876655544

>KOG4196 consensus bZIP transcription factor MafK [Transcription]

Probab=94.31  E-value=0.36  Score=40.01  Aligned_cols=45  Identities=20%  Similarity=0.183  Sum_probs=35.3

Q ss_pred             hhhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046677            3 HRIVANRMSAIRAKERKKLYIYMLEHKMHNLRSNSTTLTAQLTLL   47 (202)
Q Consensus         3 KRiLaNReSAqRSReRKkqYI~ELE~kVq~LQ~ENa~LsaqltlL   47 (202)
                      ||-|+||-.|+-=|.|...--.+||.+-..|..+...|..+++.+
T Consensus        56 RRTLKNRGYA~sCR~KRv~Qk~eLE~~k~~L~qqv~~L~~e~s~~  100 (135)
T KOG4196|consen   56 RRTLKNRGYAQSCRVKRVQQKHELEKEKAELQQQVEKLKEENSRL  100 (135)
T ss_pred             HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            578999999999999999999998887776666666555544433

>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]

Probab=94.13  E-value=0.15  Score=41.06  Aligned_cols=46  Identities=26%  Similarity=0.263  Sum_probs=43.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHH
Q 046677           22 YIYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLEI   67 (202)
Q Consensus        22 YI~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLqs   67 (202)
                      -+++||..+..|-.+...|+..+..+-++++.|..||..||.||..
T Consensus         9 ~v~~le~~l~~l~~el~~lK~~l~~lvEEN~~L~lENe~LR~RL~~   54 (114)
T COG4467           9 QVDNLEEQLGVLLAELGGLKQHLGSLVEENTALRLENEKLRERLGE   54 (114)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHHhCC
Confidence            4789999999999999999999999999999999999999999977

>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]

Probab=94.12  E-value=0.21  Score=44.59  Aligned_cols=45  Identities=18%  Similarity=0.295  Sum_probs=35.0

Q ss_pred             hhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046677            4 RIVANRMSAIRAKERKKLYIYMLEHKMHNLRSNSTTLTAQLTLLE   48 (202)
Q Consensus         4 RiLaNReSAqRSReRKkqYI~ELE~kVq~LQ~ENa~LsaqltlLq   48 (202)
                      |-=+|=++|+|||.+.+.-..|...+|..|+.||..|..+|..|.
T Consensus       198 rr~rNN~A~~kSR~~~k~~~~e~~~r~~~leken~~lr~~v~~l~  242 (269)
T KOG3119|consen  198 RRRRNNEAVRKSRDKRKQKEDEMAHRVAELEKENEALRTQVEQLK  242 (269)
T ss_pred             HHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344677899999999998888888888888888877776665433

>TIGR02449 conserved hypothetical protein TIGR02449

Probab=93.98  E-value=0.38  Score=35.26  Aligned_cols=46  Identities=20%  Similarity=0.212  Sum_probs=29.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHH
Q 046677           23 IYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLEIT   68 (202)
Q Consensus        23 I~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLqsL   68 (202)
                      |+.|-.....|..||..|..++..+..+...|...|..-+.|+++|
T Consensus         9 le~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEam   54 (65)
T TIGR02449         9 VEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEAM   54 (65)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4555555566666666666666666666666666666666666655

Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.

>PRK15422 septal ring assembly protein ZapB; Provisional

Probab=93.62  E-value=1.3  Score=33.85  Aligned_cols=68  Identities=22%  Similarity=0.289  Sum_probs=40.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH----HHHHHHhccc
Q 046677           22 YIYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLEITLQKIHLQDSLNDQIRSEI----QHMKTVLGEK   96 (202)
Q Consensus        22 YI~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLqsLeqq~~LkdaLnE~Lk~Ev----qrLK~~~gei   96 (202)
                      -++.||.||+..-..++-|.-+|..|..++..|..|+..++..-..++       ..|+.|+.|-    +||+..+|.+
T Consensus         5 vleqLE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~-------~en~qLk~E~~~WqerLr~LLGkm   76 (79)
T PRK15422          5 VFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELE-------RENNHLKEQQNGWQERLQALLGRM   76 (79)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH-------HHHHHHHHHHHHHHHHHHHHHHhh
Confidence            356788888777666666666666666666666666666554333332       2333443333    3677777654

>PRK10884 SH3 domain-containing protein; Provisional

Probab=93.51  E-value=1.4  Score=38.21  Aligned_cols=58  Identities=17%  Similarity=0.227  Sum_probs=39.0

Q ss_pred             HHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhc
Q 046677           37 STTLTAQLTLLETESNSLDAEKAVLKHRLEITLQKIHLQDSLNDQIRSEIQHMKTVLG   94 (202)
Q Consensus        37 Na~LsaqltlLq~~~~~L~sEN~eLK~RLqsLeqq~~LkdaLnE~Lk~EvqrLK~~~g   94 (202)
                      .+++..+++........|..+|..|+..++.+..+...-++.++.++.++..==..+|
T Consensus       120 ~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~~~~~wf~~G  177 (206)
T PRK10884        120 TAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQRTIIMQWFMYG  177 (206)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            4444555556666667788899999888888877776666777777666543333343

>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=93.06  E-value=2.1  Score=32.53  Aligned_cols=68  Identities=25%  Similarity=0.346  Sum_probs=30.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH----HHHHHHhcccC
Q 046677           23 IYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLEITLQKIHLQDSLNDQIRSEI----QHMKTVLGEKI   97 (202)
Q Consensus        23 I~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLqsLeqq~~LkdaLnE~Lk~Ev----qrLK~~~gei~   97 (202)
                      ++.||.||+.--...+-|.-+|..|.+++..|..|-..+....+++       +..|+.|+.|-    +|||.++|.+.
T Consensus         6 ~ekLE~KiqqAvdTI~LLQmEieELKEknn~l~~e~q~~q~~reaL-------~~eneqlk~e~~~WQerlrsLLGkme   77 (79)
T COG3074           6 FEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREAL-------ERENEQLKEEQNGWQERLRALLGKME   77 (79)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence            4556666555444333333333333333333333333333322222       23344444442    47888877553

>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []

Probab=92.98  E-value=1.9  Score=34.75  Aligned_cols=42  Identities=24%  Similarity=0.233  Sum_probs=27.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHH
Q 046677           22 YIYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKH   63 (202)
Q Consensus        22 YI~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~   63 (202)
                      -|.-+|.++..|+.+++.|..+-+.+..+...|+.+|.+++.
T Consensus        24 ~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~   65 (120)
T PF12325_consen   24 QLRRLEGELASLQEELARLEAERDELREEIVKLMEENEELRA   65 (120)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345566667777777777766666667777777777765543

The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].

>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division []

Probab=92.87  E-value=1.9  Score=32.06  Aligned_cols=51  Identities=20%  Similarity=0.272  Sum_probs=40.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhH--------hhHHHHHHHHHHHHHHHhHHH
Q 046677           23 IYMLEHKMHNLRSNSTTLTAQLTLLETESN--------SLDAEKAVLKHRLEITLQKIH   73 (202)
Q Consensus        23 I~ELE~kVq~LQ~ENa~LsaqltlLq~~~~--------~L~sEN~eLK~RLqsLeqq~~   73 (202)
                      +-|.|..+..|..||-.|+-+|-.|++...        .+..+|-+||..+.++..+..
T Consensus         2 lrEqe~~i~~L~KENF~LKLrI~fLee~l~~~~~~~~~~~~keNieLKve~~~L~~el~   60 (75)
T PF07989_consen    2 LREQEEQIDKLKKENFNLKLRIYFLEERLQKLGPESIEELLKENIELKVEVESLKRELQ   60 (75)
T ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence            458899999999999999999999887765        456778888777766654443

>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=92.87  E-value=5.5  Score=35.20  Aligned_cols=83  Identities=14%  Similarity=0.185  Sum_probs=67.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH-
Q 046677           14 RAKERKKLYIYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLEITLQKIHLQDSLNDQIRSEIQHMKTV-   92 (202)
Q Consensus        14 RSReRKkqYI~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLqsLeqq~~LkdaLnE~Lk~EvqrLK~~-   92 (202)
                      .+=+..-.+|.|++.+...|..|-.....+|.....+...|.+.-+.++...................|+.+|+++|.. 
T Consensus        25 ~~~e~ee~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R~e~  104 (230)
T PF10146_consen   25 ESLENEEKCLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELRKEY  104 (230)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444556899999999999999999999999999999999999988888777665555555555777789999999998 


Q ss_pred             hccc
Q 046677           93 LGEK   96 (202)
Q Consensus        93 ~gei   96 (202)
                      +|.-
T Consensus       105 lgl~  108 (230)
T PF10146_consen  105 LGLE  108 (230)
T ss_pred             cCCC
Confidence            6543

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.

>KOG3863 consensus bZIP transcription factor NRF1 [Transcription]

Probab=92.66  E-value=0.31  Score=48.62  Aligned_cols=62  Identities=27%  Similarity=0.351  Sum_probs=50.8

Q ss_pred             chhhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHh
Q 046677            2 CHRIVANRMSAIRAKERKKLYIYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLEITLQ   70 (202)
Q Consensus         2 aKRiLaNReSAqRSReRKkqYI~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLqsLeq   70 (202)
                      +||-=+||.+|++=|.||.--|..||..|..|+.|..+|..       +...+..+-.++|.+|..|-+
T Consensus       492 IRRRgKNkvAAQnCRKRKLd~I~nLE~ev~~l~~eKeqLl~-------Er~~~d~~L~~~kqqls~L~~  553 (604)
T KOG3863|consen  492 IRRRGKNKVAAQNCRKRKLDCILNLEDEVEKLQKEKEQLLR-------ERDELDSTLGVMKQQLSELYQ  553 (604)
T ss_pred             cccccccchhccchhhhHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
Confidence            35667899999999999999999999999999998877654       345666777888888877754

>KOG4005 consensus Transcription factor XBP-1 [Transcription]

Probab=92.52  E-value=1.4  Score=40.22  Aligned_cols=65  Identities=22%  Similarity=0.248  Sum_probs=56.9

Q ss_pred             HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHhHHHHHHHH
Q 046677           14 RAKERKKLY-IYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLEITLQKIHLQDSL   78 (202)
Q Consensus        14 RSReRKkqY-I~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLqsLeqq~~LkdaL   78 (202)
                      +.|+-++.| |.||+.+-..|+.||..|.+....|-.+++.|.++-.++++.|..+.+++......
T Consensus        89 KaRm~eme~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le~~~~~l~~~~~~~~~~~~v  154 (292)
T KOG4005|consen   89 KARMEEMEYEIKDLTEENEILQNENDSLRAINESLLAKNHELDSELELLRQELAELKQQQQHNTRV  154 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHHHHHHhhHH
Confidence            455667766 68999999999999999999999999999999999999999999998888776433

>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation

Probab=92.20  E-value=1.1  Score=33.17  Aligned_cols=45  Identities=20%  Similarity=0.211  Sum_probs=26.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHH
Q 046677           23 IYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLEI   67 (202)
Q Consensus        23 I~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLqs   67 (202)
                      |..+-..+..|+.|+..|..+...|..++..|..||..|+..-.+
T Consensus        13 i~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~   57 (72)
T PF06005_consen   13 IQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNA   57 (72)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence            444555566666666666666666666666666666666654433

It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.

>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=91.80  E-value=3.9  Score=37.26  Aligned_cols=44  Identities=32%  Similarity=0.384  Sum_probs=21.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHH
Q 046677           24 YMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLEI   67 (202)
Q Consensus        24 ~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLqs   67 (202)
                      .+++.++..|+.|...+..++..++.+...+..|-..|+.....
T Consensus        46 ~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~   89 (314)
T PF04111_consen   46 EELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELEE   89 (314)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444444455555555555555444444444444444444333

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.

>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function

Probab=91.56  E-value=1  Score=32.52  Aligned_cols=49  Identities=20%  Similarity=0.142  Sum_probs=37.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHH
Q 046677           21 LYIYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLEITL   69 (202)
Q Consensus        21 qYI~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLqsLe   69 (202)
                      ..|.+||.++..++....+|...++.-+++...|..+...|+.|+.+++
T Consensus         4 ~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~   52 (69)
T PF04102_consen    4 ERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELE   52 (69)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            4688999999999999999988888888888888777777777776654

It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

Probab=91.53  E-value=7.1  Score=34.96  Aligned_cols=67  Identities=19%  Similarity=0.204  Sum_probs=38.8

Q ss_pred             hHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HhhHhhHHHHHHHHHHHHHHHhH
Q 046677            5 IVANRMSAIRAKERKKLYIYMLEHKMHNLRSNSTTLTAQLTLLE---------TESNSLDAEKAVLKHRLEITLQK   71 (202)
Q Consensus         5 iLaNReSAqRSReRKkqYI~ELE~kVq~LQ~ENa~LsaqltlLq---------~~~~~L~sEN~eLK~RLqsLeqq   71 (202)
                      +.+-.+.+.+.-.-+..-+++|+.+|..++.+..+++.++...+         +++..|..|-..++.|+.+++.+
T Consensus        36 ~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~~~~e~~aL~~E~~~ak~r~~~le~e  111 (239)
T COG1579          36 AKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAVKDERELRALNIEIQIAKERINSLEDE  111 (239)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344445555555666666777777777777777766666554         33444555555555555555443

>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=91.13  E-value=1.1  Score=37.59  Aligned_cols=61  Identities=18%  Similarity=0.243  Sum_probs=29.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 046677           22 YIYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLEITLQKIHLQDSLNDQI   82 (202)
Q Consensus        22 YI~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLqsLeqq~~LkdaLnE~L   82 (202)
                      -|.+|+.++..|+.++..|...+......+..|..|...|...+..++....-....|..|
T Consensus       117 ~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~L  177 (194)
T PF08614_consen  117 RLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENREL  177 (194)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445555555555555555555544444444444444444444444444444334444444

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.

>PF14662 CCDC155: Coiled-coil region of CCDC155

Probab=91.04  E-value=2  Score=37.54  Aligned_cols=42  Identities=29%  Similarity=0.347  Sum_probs=37.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHH
Q 046677           24 YMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRL   65 (202)
Q Consensus        24 ~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RL   65 (202)
                      .-|+.+|..|+.+|.+|....+.+......|.+++..|+-.+
T Consensus        98 q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq~Ql  139 (193)
T PF14662_consen   98 QSLVAEIETLQEENGKLLAERDGLKKRSKELATEKATLQRQL  139 (193)
T ss_pred             HHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHHHHHH
Confidence            457889999999999999999999999999999999998877

>PRK00295 hypothetical protein; Provisional

Probab=90.60  E-value=2.2  Score=30.99  Aligned_cols=45  Identities=20%  Similarity=0.128  Sum_probs=33.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHH
Q 046677           22 YIYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLE   66 (202)
Q Consensus        22 YI~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLq   66 (202)
                      .|.+||.++...+.....|...|+.-++....|..+-..|+.|+.
T Consensus         6 Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~   50 (68)
T PRK00295          6 RVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQE   50 (68)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            389999999999999999988888777777666655555544443

>PRK02793 phi X174 lysis protein; Provisional

Probab=90.59  E-value=1.9  Score=31.62  Aligned_cols=43  Identities=19%  Similarity=0.144  Sum_probs=29.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHH
Q 046677           21 LYIYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKH   63 (202)
Q Consensus        21 qYI~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~   63 (202)
                      ..|.+||.+|...+....+|..-|+.-++....|..+-+.|+.
T Consensus         8 ~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~   50 (72)
T PRK02793          8 ARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTE   50 (72)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4678888888888888888877777666665555544444433

>PRK00736 hypothetical protein; Provisional

Probab=90.55  E-value=2  Score=31.16  Aligned_cols=44  Identities=16%  Similarity=0.157  Sum_probs=31.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHH
Q 046677           22 YIYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRL   65 (202)
Q Consensus        22 YI~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RL   65 (202)
                      .|.+||.++...+.....|...|+.-++....|..+-..|..|+
T Consensus         6 Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl   49 (68)
T PRK00736          6 RLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERF   49 (68)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            48999999999999888888888777666655554444444433

>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure

Probab=90.55  E-value=2  Score=32.60  Aligned_cols=47  Identities=15%  Similarity=0.246  Sum_probs=42.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHH
Q 046677           23 IYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLEITL   69 (202)
Q Consensus        23 I~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLqsLe   69 (202)
                      -++|..++..|+.....|..++.....++..|.+||..|..=|..|.
T Consensus        18 k~~Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~nLm   64 (80)
T PF10224_consen   18 KEELIQEILELQDSLEALSDRVEEVKEENEKLESENEYLQQYIGNLM   64 (80)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            36788899999999999999999999999999999999988777663

The exact function is unknown.

>PRK04325 hypothetical protein; Provisional

Probab=90.51  E-value=1.9  Score=31.74  Aligned_cols=42  Identities=19%  Similarity=0.112  Sum_probs=30.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHH
Q 046677           22 YIYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKH   63 (202)
Q Consensus        22 YI~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~   63 (202)
                      .|.+||.+|...+..+..|...|+.-++....|..+-+.|..
T Consensus        10 Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~   51 (74)
T PRK04325         10 RITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQ   51 (74)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            388999999999988888888877766666555544444433

>PF13747 DUF4164: Domain of unknown function (DUF4164)

Probab=90.48  E-value=5.1  Score=30.48  Aligned_cols=65  Identities=17%  Similarity=0.257  Sum_probs=54.8

Q ss_pred             hhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHH
Q 046677            4 RIVANRMSAIRAKERKKLYIYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLEIT   68 (202)
Q Consensus         4 RiLaNReSAqRSReRKkqYI~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLqsL   68 (202)
                      +.|.+=+++--.|--+..-..+++.+|+.|....+.|..++.-....+..|..-|.++..||.+.
T Consensus        15 ~aid~LE~~v~~r~~~~~~~~~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~~Evs~rL~~a   79 (89)
T PF13747_consen   15 AAIDRLEKAVDRRLERDRKRDELEEEIQRLDADRSRLAQELDQAEARANRLEEANREVSRRLDSA   79 (89)
T ss_pred             HHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence            34556666666666666666999999999999999999999999999999999999999998654

>PRK02119 hypothetical protein; Provisional

Probab=90.35  E-value=2  Score=31.61  Aligned_cols=43  Identities=14%  Similarity=0.033  Sum_probs=26.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHH
Q 046677           21 LYIYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKH   63 (202)
Q Consensus        21 qYI~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~   63 (202)
                      ..|.+||.+|...+....+|...|+.-++....|..+-..|+.
T Consensus         9 ~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~   51 (73)
T PRK02119          9 NRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMAN   51 (73)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4567777777777777777777666665555555444444433

>PRK10884 SH3 domain-containing protein; Provisional

Probab=90.00  E-value=2.7  Score=36.51  Aligned_cols=8  Identities=25%  Similarity=0.140  Sum_probs=3.0

Q ss_pred             HHHHHHHH
Q 046677           61 LKHRLEIT   68 (202)
Q Consensus        61 LK~RLqsL   68 (202)
                      |+.+.+.+
T Consensus       137 L~~~n~~L  144 (206)
T PRK10884        137 LKEENQKL  144 (206)
T ss_pred             HHHHHHHH
Confidence            33333333

>COG2433 Uncharacterized conserved protein [Function unknown]

Probab=89.72  E-value=3.9  Score=41.35  Aligned_cols=45  Identities=22%  Similarity=0.325  Sum_probs=33.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHH
Q 046677           21 LYIYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRL   65 (202)
Q Consensus        21 qYI~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RL   65 (202)
                      .-+.+++.+|..|+.||..|...+..+.+....|.++-..++.++
T Consensus       422 ~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~  466 (652)
T COG2433         422 KRIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREV  466 (652)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456677888888888888888888877777777777766665544

>TIGR02449 conserved hypothetical protein TIGR02449

Probab=89.60  E-value=5.4  Score=29.28  Aligned_cols=46  Identities=20%  Similarity=0.247  Sum_probs=34.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHH
Q 046677           23 IYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLEIT   68 (202)
Q Consensus        23 I~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLqsL   68 (202)
                      +..||.||..|=.-...|..++..|..+...+.+|+..|+.+.+.-
T Consensus         2 L~~Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~A   47 (65)
T TIGR02449         2 LQALAAQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQA   47 (65)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4567888888877777777777777777777777777777766443

Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.

>PRK04406 hypothetical protein; Provisional

Probab=89.38  E-value=2.6  Score=31.26  Aligned_cols=36  Identities=14%  Similarity=0.093  Sum_probs=21.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHH
Q 046677           22 YIYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAE   57 (202)
Q Consensus        22 YI~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sE   57 (202)
                      .|.+||.++...+....+|...|+.-++....|..+
T Consensus        12 Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~q   47 (75)
T PRK04406         12 RINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQ   47 (75)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            566666666666666666666665555544444433

>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=89.37  E-value=9.3  Score=32.07  Aligned_cols=29  Identities=31%  Similarity=0.436  Sum_probs=10.7

Q ss_pred             HHHHHHHHHHHHHHHHHhhHhhHHHHHHH
Q 046677           33 LRSNSTTLTAQLTLLETESNSLDAEKAVL   61 (202)
Q Consensus        33 LQ~ENa~LsaqltlLq~~~~~L~sEN~eL   61 (202)
                      |..|...|..++..++.....|..||.+|
T Consensus       149 l~DE~~~L~l~~~~~e~k~~~l~~En~~L  177 (194)
T PF08614_consen  149 LQDELQALQLQLNMLEEKLRKLEEENREL  177 (194)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333333333333333333333

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.

>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=88.71  E-value=4  Score=30.97  Aligned_cols=44  Identities=18%  Similarity=0.364  Sum_probs=37.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHH
Q 046677           22 YIYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRL   65 (202)
Q Consensus        22 YI~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RL   65 (202)
                      -|.=|.-+|..|..+|.+|..+...++.....|..||..||..-
T Consensus        19 TI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~   62 (79)
T COG3074          19 TITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQ   62 (79)
T ss_pred             HHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45667788888889999999999999999999999999998743

>PRK00846 hypothetical protein; Provisional

Probab=88.32  E-value=3.5  Score=31.08  Aligned_cols=45  Identities=16%  Similarity=0.032  Sum_probs=28.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHH
Q 046677           21 LYIYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRL   65 (202)
Q Consensus        21 qYI~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RL   65 (202)
                      ..|.+||.++...+.-...|...++..++....|...-..|+.||
T Consensus        13 ~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL   57 (77)
T PRK00846         13 ARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDL   57 (77)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            567788888877777777777766665555554444444444433

>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []

Probab=87.56  E-value=13  Score=29.86  Aligned_cols=46  Identities=24%  Similarity=0.297  Sum_probs=22.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHH
Q 046677           23 IYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLEIT   68 (202)
Q Consensus        23 I~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLqsL   68 (202)
                      ++.|...+..++.|.+.+..++..+......+..|-..|-...+.+
T Consensus        18 ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~   63 (120)
T PF12325_consen   18 VERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEEL   63 (120)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444455555555555555555555555555555544444444433

The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].

>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5

Probab=87.54  E-value=14  Score=37.04  Aligned_cols=84  Identities=20%  Similarity=0.275  Sum_probs=51.8

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHH------------------------HHHHHHHHHHHHHhhHhhHHHHHHHHHH
Q 046677            9 RMSAIRAKERKKLYIYMLEHKMHNLRSN------------------------STTLTAQLTLLETESNSLDAEKAVLKHR   64 (202)
Q Consensus         9 ReSAqRSReRKkqYI~ELE~kVq~LQ~E------------------------Na~LsaqltlLq~~~~~L~sEN~eLK~R   64 (202)
                      .+.--+-...+...|.+||.++..++..                        |..|+.+++.++..+..|+.+|.+|+..
T Consensus       110 ne~Ls~L~~EqEerL~ELE~~le~~~e~~~D~~kLLe~lqsdk~t~SRAlsQN~eLK~QL~Elq~~Fv~ltne~~elt~~  189 (617)
T PF15070_consen  110 NEQLSRLNQEQEERLAELEEELERLQEQQEDRQKLLEQLQSDKATASRALSQNRELKEQLAELQDAFVKLTNENMELTSA  189 (617)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHhhHH
Confidence            3333333345677788888777776654                        4566777788888888888888888777


Q ss_pred             HHHHHhHH-HHHHHHHHHHHHHHHHHHHHh
Q 046677           65 LEITLQKI-HLQDSLNDQIRSEIQHMKTVL   93 (202)
Q Consensus        65 LqsLeqq~-~LkdaLnE~Lk~EvqrLK~~~   93 (202)
                      |++-.+-. .|...++ .|..++..++..+
T Consensus       190 lq~Eq~~~keL~~kl~-~l~~~l~~~~e~l  218 (617)
T PF15070_consen  190 LQSEQHVKKELQKKLG-ELQEKLHNLKEKL  218 (617)
T ss_pred             HHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence            76654433 2333333 2455555555544

>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional

Probab=87.42  E-value=3.3  Score=40.45  Aligned_cols=44  Identities=14%  Similarity=0.166  Sum_probs=37.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHH
Q 046677           22 YIYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRL   65 (202)
Q Consensus        22 YI~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RL   65 (202)
                      -.+|||.++..|+.|...++.+...++++...|.+||..|+.++
T Consensus        77 kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql  120 (475)
T PRK13729         77 TAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQV  120 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence            57788888888888888888888888888888888888888766

>PRK15422 septal ring assembly protein ZapB; Provisional

Probab=87.27  E-value=6.3  Score=30.13  Aligned_cols=44  Identities=18%  Similarity=0.381  Sum_probs=29.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHH
Q 046677           23 IYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLE   66 (202)
Q Consensus        23 I~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLq   66 (202)
                      |.=|--+|..|..+|..|..++..+......|..||..||....
T Consensus        20 I~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~   63 (79)
T PRK15422         20 ITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQN   63 (79)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence            44455666666666666666666666667778888888877443

>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]

Probab=87.04  E-value=10  Score=37.15  Aligned_cols=77  Identities=21%  Similarity=0.274  Sum_probs=53.0

Q ss_pred             HHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHhHHHHH--------
Q 046677           18 RKKLYIYMLEHKMHNLR--------------SNSTTLTAQLTLLETESNSLDAEKAVLKHRLEITLQKIHLQ--------   75 (202)
Q Consensus        18 RKkqYI~ELE~kVq~LQ--------------~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLqsLeqq~~Lk--------   75 (202)
                      =|..|-+|+|+++..-+              .+...+..++..|.+.+..---||..|-..+++-++..+-.        
T Consensus       390 MKnAhrEEmeRELeKsqSvnsdveaLRrQyleelqsvqRELeVLSEQYSQKCLEnahLaqalEaerqaLRqCQrEnQELn  469 (593)
T KOG4807|consen  390 MKNAHREEMERELEKSQSVNSDVEALRRQYLEELQSVQRELEVLSEQYSQKCLENAHLAQALEAERQALRQCQRENQELN  469 (593)
T ss_pred             HHHHHHHHHHHHHHhhhccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence            36778888888765433              35556677777777777777778888876666554443322        


Q ss_pred             ---HHHHHHHHHHHHHHHHHhc
Q 046677           76 ---DSLNDQIRSEIQHMKTVLG   94 (202)
Q Consensus        76 ---daLnE~Lk~EvqrLK~~~g   94 (202)
                         .-||..|.+||.|||..+.
T Consensus       470 aHNQELnnRLaaEItrLRtllt  491 (593)
T KOG4807|consen  470 AHNQELNNRLAAEITRLRTLLT  491 (593)
T ss_pred             HHHHHHhhHHHHHHHHHHHHhc
Confidence               1367778999999998874

>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family

Probab=86.79  E-value=3.8  Score=34.93  Aligned_cols=42  Identities=21%  Similarity=0.284  Sum_probs=32.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHhH
Q 046677           30 MHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLEITLQK   71 (202)
Q Consensus        30 Vq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLqsLeqq   71 (202)
                      +..+..||..|..++..|+..+..|..||..|+.++..++..
T Consensus        99 ~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eD  140 (161)
T TIGR02894        99 DQALQKENERLKNQNESLQKRNEELEKELEKLRQRLSTIEED  140 (161)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            566777888888888888888888888888888877776543

In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.

>PRK11637 AmiB activator; Provisional

Probab=86.42  E-value=19  Score=33.46  Aligned_cols=50  Identities=4%  Similarity=0.005  Sum_probs=23.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHH
Q 046677           20 KLYIYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLEITL   69 (202)
Q Consensus        20 kqYI~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLqsLe   69 (202)
                      ..-+.++..++..++.+...+..+|..+..+...+..+-..+..++..++
T Consensus        60 ~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~  109 (428)
T PRK11637         60 EKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELN  109 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344444444444444444444444444444444444444444444443

>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins

Probab=86.36  E-value=7.6  Score=30.14  Aligned_cols=65  Identities=20%  Similarity=0.183  Sum_probs=45.3

Q ss_pred             hhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHhhHhhHHHHHHHHHHHHHHHhHHHH
Q 046677           10 MSAIRAKERKK-LYIYMLEHKMHNLRSNSTTL--TAQLTLLETESNSLDAEKAVLKHRLEITLQKIHL   74 (202)
Q Consensus        10 eSAqRSReRKk-qYI~ELE~kVq~LQ~ENa~L--saqltlLq~~~~~L~sEN~eLK~RLqsLeqq~~L   74 (202)
                      ..|.|++..+. .-+.+.+.++..++++...|  +..+..|+-....+..+-+++..++..+.....+
T Consensus        30 ~~a~~~~~~~l~~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v~~~~~l   97 (106)
T PF10805_consen   30 TYAKREDIEKLEERLDEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGVSHQLDL   97 (106)
T ss_pred             hhccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence            34445554443 44555578888888877777  7777777777888888888888888888655443

The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.

>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []

Probab=85.50  E-value=2.9  Score=28.37  Aligned_cols=36  Identities=25%  Similarity=0.318  Sum_probs=21.2

Q ss_pred             HHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHH
Q 046677           33 LRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLEIT   68 (202)
Q Consensus        33 LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLqsL   68 (202)
                      |+.+-..|+...+.|..++..|..||..|+..+..+
T Consensus         3 lE~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L   38 (45)
T PF02183_consen    3 LERDYDALKASYDSLKAEYDSLKKENEKLRAEVQEL   38 (45)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455555566666666666666666666666554443

; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6

Probab=85.38  E-value=14  Score=27.87  Aligned_cols=68  Identities=19%  Similarity=0.249  Sum_probs=38.5

Q ss_pred             hhhHHhhhhHHHHHHHHH------HHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH---hhHhhHHHHHHHHHHHH
Q 046677            3 HRIVANRMSAIRAKERKK------LYIYM-------LEHKMHNLRSNSTTLTAQLTLLET---ESNSLDAEKAVLKHRLE   66 (202)
Q Consensus         3 KRiLaNReSAqRSReRKk------qYI~E-------LE~kVq~LQ~ENa~LsaqltlLq~---~~~~L~sEN~eLK~RLq   66 (202)
                      |.|..|.+..+.+-.++-      ..|-+       |..++..|+.+-..++.+|..+..   +...|..+-++||..+.
T Consensus         5 k~ir~n~e~v~~~l~~R~~~~~~vd~i~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~   84 (108)
T PF02403_consen    5 KLIRENPEEVRENLKKRGGDEEDVDEIIELDQERRELQQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEEIK   84 (108)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHH
T ss_pred             HHHHhCHHHHHHHHHHcCCCHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHH
Confidence            455666666666655552      23333       344455555555555555555554   35666667777777766


Q ss_pred             HHHh
Q 046677           67 ITLQ   70 (202)
Q Consensus        67 sLeq   70 (202)
                      .++.
T Consensus        85 ~le~   88 (108)
T PF02403_consen   85 ELEE   88 (108)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6653

1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....

>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues

Probab=84.88  E-value=7.3  Score=36.15  Aligned_cols=58  Identities=24%  Similarity=0.371  Sum_probs=44.2

Q ss_pred             HHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhccc
Q 046677           32 NLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLEITLQKIHLQDSLNDQIRSEIQHMKTVLGEK   96 (202)
Q Consensus        32 ~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLqsLeqq~~LkdaLnE~Lk~EvqrLK~~~gei   96 (202)
                      ..+.|++.|.++|..++..+..+++||-+|...|.+.      +++. ..|..|+..|+-.+.++
T Consensus       231 rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~s------ke~Q-~~L~aEL~elqdkY~E~  288 (306)
T PF04849_consen  231 RQQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQAS------KESQ-RQLQAELQELQDKYAEC  288 (306)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH------HHHH-HHHHHHHHHHHHHHHHH
Confidence            4567899999999999999999999999999988765      2222 23566777777666544

HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].

>PRK11637 AmiB activator; Provisional

Probab=84.75  E-value=34  Score=31.87  Aligned_cols=49  Identities=16%  Similarity=0.125  Sum_probs=20.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHhH
Q 046677           23 IYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLEITLQK   71 (202)
Q Consensus        23 I~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLqsLeqq   71 (202)
                      |.+++.++..++.+...+..++..+..+...+..+-+.+...|..++.+
T Consensus        56 i~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~e  104 (428)
T PRK11637         56 IAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQ  104 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333444444444444444444444444444444444444444444333

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope

Probab=84.59  E-value=13  Score=32.50  Aligned_cols=16  Identities=13%  Similarity=0.353  Sum_probs=7.7

Q ss_pred             HHHHHHHHHHHHHHHh
Q 046677           78 LNDQIRSEIQHMKTVL   93 (202)
Q Consensus        78 LnE~Lk~EvqrLK~~~   93 (202)
                      ....+..|+..||..+
T Consensus        97 ~~~~le~el~~lrk~l  112 (312)
T PF00038_consen   97 ERKDLEEELESLRKDL  112 (312)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhhhhh
Confidence            3344455555555444

They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....

>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family

Probab=83.72  E-value=7.3  Score=38.13  Aligned_cols=42  Identities=26%  Similarity=0.311  Sum_probs=28.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHh
Q 046677           29 KMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLEITLQ   70 (202)
Q Consensus        29 kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLqsLeq   70 (202)
                      .|.+|-.+...++.++..+..++..|..||..||.|...+.+
T Consensus        60 TlrTlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~  101 (472)
T TIGR03752        60 TLRTLVAEVKELRKRLAKLISENEALKAENERLQKREQSIDQ  101 (472)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence            456666666667777777777777777777777776666544

Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=83.56  E-value=10  Score=39.73  Aligned_cols=77  Identities=18%  Similarity=0.194  Sum_probs=64.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcccCCC
Q 046677           20 KLYIYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLEITLQKIHLQDSLNDQIRSEIQHMKTVLGEKIPN   99 (202)
Q Consensus        20 kqYI~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLqsLeqq~~LkdaLnE~Lk~EvqrLK~~~gei~~~   99 (202)
                      .+|+++|..-+..+.....++-.++..+.+....|..||.+|...++..       -..+..|++++.-||.-.|-+.+.
T Consensus       649 ~k~~e~l~~~~~kyK~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~-------~s~hsql~~q~~~Lk~qLg~~~~~  721 (970)
T KOG0946|consen  649 EKYHEELDDIQQKYKGLIRELDYQIENLKQMEKELQVENEELEEEVQDF-------ISEHSQLKDQLDLLKNQLGIISSK  721 (970)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHhcccccc
Confidence            5789999999999999999999999999999999999999998877554       355666777888899999877776


Q ss_pred             Cccc
Q 046677          100 LGAL  103 (202)
Q Consensus       100 ~g~~  103 (202)
                      .+.+
T Consensus       722 ~~~~  725 (970)
T KOG0946|consen  722 QRDL  725 (970)
T ss_pred             hhhH
Confidence            6544

>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences

Probab=83.50  E-value=9.9  Score=31.01  Aligned_cols=16  Identities=31%  Similarity=0.443  Sum_probs=6.2

Q ss_pred             HhhHHHHHHHHHHHHH
Q 046677           52 NSLDAEKAVLKHRLEI   67 (202)
Q Consensus        52 ~~L~sEN~eLK~RLqs   67 (202)
                      ..|..|+..|..||..
T Consensus       119 ~~l~~e~~~l~~kL~~  134 (169)
T PF07106_consen  119 EELEEEIEELEEKLEK  134 (169)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            3333333333333333

TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].

>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport

Probab=83.47  E-value=18  Score=27.82  Aligned_cols=58  Identities=17%  Similarity=0.266  Sum_probs=36.6

Q ss_pred             HHHHHHHHHHHHHHHHHH------hhHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 046677           32 NLRSNSTTLTAQLTLLET------ESNSLDAEKAVLKHRLEITLQKIHLQDSLNDQIRSEIQHMKT   91 (202)
Q Consensus        32 ~LQ~ENa~LsaqltlLq~------~~~~L~sEN~eLK~RLqsLeqq~~LkdaLnE~Lk~EvqrLK~   91 (202)
                      .+..++..|..+|..|+.      +.+....||..|+..+..+..=.  ...-.|.+..||..|+.
T Consensus        21 ~~~~e~~~L~eEI~~Lr~qve~nPevtr~A~EN~rL~ee~rrl~~f~--~~gerE~l~~eis~L~~   84 (86)
T PF12711_consen   21 YLEEENEALKEEIQLLREQVEHNPEVTRFAMENIRLREELRRLQSFY--VEGEREMLLQEISELRD   84 (86)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHH--HhhHHHHHHHHHHHHHh
Confidence            445566666666666664      33556678887777665553333  34566777778877765

The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.

>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]

Probab=83.46  E-value=17  Score=36.78  Aligned_cols=71  Identities=21%  Similarity=0.302  Sum_probs=60.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHhHHHHHH---HHHHHHHHHHHHHHHHh
Q 046677           23 IYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLEITLQKIHLQD---SLNDQIRSEIQHMKTVL   93 (202)
Q Consensus        23 I~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLqsLeqq~~Lkd---aLnE~Lk~EvqrLK~~~   93 (202)
                      |..|..++..|..+...+...+..+.+++.....++..+..+|...+....-+.   .++..|..+|..||..+
T Consensus       243 i~~l~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~l~~~~~e~~~r~kL~N~i~eLkGnI  316 (670)
T KOG0239|consen  243 IQALQQELEELKAELKELNDQVSLLTREVQEALKESNTLQSDLESLEENLVEKKKEKEERRKLHNEILELKGNI  316 (670)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCc
Confidence            888888999999999999999999999999999999999888888877777666   77888888888888755

>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family

Probab=83.34  E-value=12  Score=36.80  Aligned_cols=27  Identities=22%  Similarity=0.302  Sum_probs=13.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046677           23 IYMLEHKMHNLRSNSTTLTAQLTLLET   49 (202)
Q Consensus        23 I~ELE~kVq~LQ~ENa~LsaqltlLq~   49 (202)
                      +.+++.++..|..+|..|.++++.|++
T Consensus        68 ~k~~r~~~~~l~~~N~~l~~eN~~L~~   94 (472)
T TIGR03752        68 VKELRKRLAKLISENEALKAENERLQK   94 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344555555555555555555554433

Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.

>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana

Probab=83.15  E-value=27  Score=29.95  Aligned_cols=49  Identities=16%  Similarity=0.125  Sum_probs=30.0

Q ss_pred             hhhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 046677            3 HRIVANRMSAIRAKERKKLYIYMLEHKMHNLRSNSTTLTAQLTLLETES   51 (202)
Q Consensus         3 KRiLaNReSAqRSReRKkqYI~ELE~kVq~LQ~ENa~LsaqltlLq~~~   51 (202)
                      +..|.+..|-+-.+...+.+...+|.++..-..+..++...+..|+...
T Consensus        92 ~~RL~kLL~lk~~~~~~~e~~k~le~~~~~~~~~~~~~e~~i~~Le~ki  140 (190)
T PF05266_consen   92 RSRLNKLLSLKDDQEKLLEERKKLEKKIEEKEAELKELESEIKELEMKI  140 (190)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence            3455667777777777777777777777766444444444444444433

>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]

Probab=82.69  E-value=26  Score=29.00  Aligned_cols=64  Identities=25%  Similarity=0.269  Sum_probs=49.3

Q ss_pred             HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHh
Q 046677            7 ANRMSAIRAKERKKLYIYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLEITLQ   70 (202)
Q Consensus         7 aNReSAqRSReRKkqYI~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLqsLeq   70 (202)
                      .|++.+-+--+-+++.|..|+.++..+-.+...|...+..+..+...|.-+-...+.++..|+.
T Consensus        38 ~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE~  101 (140)
T PF10473_consen   38 ENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEKVSELES  101 (140)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5777777777888888888888888888888888888887777777777777777777666653

There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding

>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]

Probab=82.67  E-value=32  Score=34.66  Aligned_cols=47  Identities=21%  Similarity=0.363  Sum_probs=38.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHH
Q 046677           20 KLYIYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLE   66 (202)
Q Consensus        20 kqYI~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLq   66 (202)
                      +.|+..++.+-..+......|..++..-+.++..|..+|.+||..+.
T Consensus       279 ~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie  325 (581)
T KOG0995|consen  279 QAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIE  325 (581)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56888888888888888888888888888888888888888876553

>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking

Probab=82.10  E-value=29  Score=29.56  Aligned_cols=79  Identities=15%  Similarity=0.201  Sum_probs=40.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhc
Q 046677           16 KERKKLYIYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLEITLQKIHLQDSLNDQIRSEIQHMKTVLG   94 (202)
Q Consensus        16 ReRKkqYI~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLqsLeqq~~LkdaLnE~Lk~EvqrLK~~~g   94 (202)
                      ....+..+.+++.++..|..+...+..++....+....+...+...+..+........-.....+.+..++...+....
T Consensus        58 ~~~~~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  136 (302)
T PF10186_consen   58 IQQLKREIEELRERLERLRERIERLRKRIEQKRERLEELRESLEQRRSRLSASQDLVESRQEQLEELQNELEERKQRLS  136 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344455556666666666666666666666666666666666665555552222222222222333445555554443

In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy

>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []

Probab=81.77  E-value=6.3  Score=28.19  Aligned_cols=46  Identities=20%  Similarity=0.249  Sum_probs=26.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 046677           23 IYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLEITLQKIHLQDSLNDQI   82 (202)
Q Consensus        23 I~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLqsLeqq~~LkdaLnE~L   82 (202)
                      |.|||.+|..+.+..              ..+..||.+|+..++.+++..+-.=.+.|..
T Consensus         2 i~elEn~~~~~~~~i--------------~tvk~en~~i~~~ve~i~envk~ll~lYE~V   47 (55)
T PF05377_consen    2 IDELENELPRIESSI--------------NTVKKENEEISESVEKIEENVKDLLSLYEVV   47 (55)
T ss_pred             HHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456666665555443              3455667777777777766554333445544

In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].

>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking

Probab=81.66  E-value=32  Score=29.29  Aligned_cols=39  Identities=18%  Similarity=0.169  Sum_probs=21.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 046677           13 IRAKERKKLYIYMLEHKMHNLRSNSTTLTAQLTLLETES   51 (202)
Q Consensus        13 qRSReRKkqYI~ELE~kVq~LQ~ENa~LsaqltlLq~~~   51 (202)
                      ..-..+++..+..|..++..+..++.....++..+....
T Consensus        62 ~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l  100 (302)
T PF10186_consen   62 KREIEELRERLERLRERIERLRKRIEQKRERLEELRESL  100 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344445555566666666666665555555555444433

In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy

>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana

Probab=81.63  E-value=33  Score=29.45  Aligned_cols=45  Identities=16%  Similarity=0.149  Sum_probs=24.3

Q ss_pred             hhHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhc
Q 046677           50 ESNSLDAEKAVLKHRLEITLQKIHLQDSLNDQIRSEIQHMKTVLG   94 (202)
Q Consensus        50 ~~~~L~sEN~eLK~RLqsLeqq~~LkdaLnE~Lk~EvqrLK~~~g   94 (202)
                      +...+..+-.+|...|..+..++..-+...++..+||.+|+..+.
T Consensus       125 ~~~~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~  169 (190)
T PF05266_consen  125 ELKELESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAE  169 (190)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334455555555555555555555555555555556666655554

>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants

Probab=81.19  E-value=25  Score=36.34  Aligned_cols=23  Identities=22%  Similarity=0.520  Sum_probs=16.8

Q ss_pred             HHHHHHHHHHHHHhcccCCCCcc
Q 046677           80 DQIRSEIQHMKTVLGEKIPNLGA  102 (202)
Q Consensus        80 E~Lk~EvqrLK~~~gei~~~~g~  102 (202)
                      ..|.+|++|||..+---.+++..
T Consensus       193 akLEaEC~rLr~l~rk~lpgpaa  215 (769)
T PF05911_consen  193 AKLEAECQRLRALVRKKLPGPAA  215 (769)
T ss_pred             HHHHHHHHHHHHHHhccCCChHH
Confidence            35689999999988765555543

The function of this family is unknown.

>PRK09039 hypothetical protein; Validated

Probab=81.17  E-value=46  Score=30.75  Aligned_cols=39  Identities=15%  Similarity=0.172  Sum_probs=15.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHH
Q 046677           30 MHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLEIT   68 (202)
Q Consensus        30 Vq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLqsL   68 (202)
                      |..|..+...|+.++..++...........+.+.+++.+
T Consensus       139 V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L  177 (343)
T PRK09039        139 VELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADL  177 (343)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333334444444444444444444444444444333

>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions []

Probab=81.06  E-value=22  Score=27.04  Aligned_cols=74  Identities=15%  Similarity=0.142  Sum_probs=60.3

Q ss_pred             hhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHH-HHHhHHHHHHH
Q 046677            4 RIVANRMSAIRAKERKKLYIYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLE-ITLQKIHLQDS   77 (202)
Q Consensus         4 RiLaNReSAqRSReRKkqYI~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLq-sLeqq~~Lkda   77 (202)
                      +|-..+.....+=..|..-+..||.++..|..|.+.-..+.-.+.+....|..|++.|+..+. +-+-...|++.
T Consensus         7 ~~~~a~~~~~~~~~~k~~~~~~lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e~k~L~~~~~Ks~~~i~~L~~~   81 (96)
T PF08647_consen    7 SMEQAFKELSEQADKKVKELTILEQKKLRLEAEKAKADQKYFAAMRSKDALDNEMKKLNTQLSKSSELIEQLKET   81 (96)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence            444566667777778888899999999999999999999999999999999999999998663 34445555553

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=80.76  E-value=55  Score=32.80  Aligned_cols=34  Identities=29%  Similarity=0.364  Sum_probs=13.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHH
Q 046677           24 YMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAE   57 (202)
Q Consensus        24 ~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sE   57 (202)
                      ..|+.++..|+.++..|...+.....++..|..+
T Consensus       160 ~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~  193 (546)
T PF07888_consen  160 EQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQ  193 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444444444444333333333333333

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>PF15294 Leu_zip: Leucine zipper

Probab=80.75  E-value=5.9  Score=36.30  Aligned_cols=43  Identities=26%  Similarity=0.358  Sum_probs=21.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHH
Q 046677           26 LEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLEIT   68 (202)
Q Consensus        26 LE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLqsL   68 (202)
                      |..++..|+.||.+|+.++..++..++...-|+..|...|..+
T Consensus       130 l~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~l  172 (278)
T PF15294_consen  130 LNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKEL  172 (278)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444555555555555555555555555555555554444433

>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport

Probab=80.46  E-value=6.3  Score=30.37  Aligned_cols=65  Identities=18%  Similarity=0.278  Sum_probs=39.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHh
Q 046677           28 HKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLEITLQKIHLQDSLNDQIRSEIQHMKTVL   93 (202)
Q Consensus        28 ~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLqsLeqq~~LkdaLnE~Lk~EvqrLK~~~   93 (202)
                      .++..|+.-...--..-+.+..++..|..|...|+.+++-==.=.++. ..|-.|++|+.||+...
T Consensus         3 dkI~rLE~~~~g~l~~~~~~~~e~~~L~eEI~~Lr~qve~nPevtr~A-~EN~rL~ee~rrl~~f~   67 (86)
T PF12711_consen    3 DKIKRLEKLLDGKLPSESYLEEENEALKEEIQLLREQVEHNPEVTRFA-MENIRLREELRRLQSFY   67 (86)
T ss_pred             hHHHHHHHHhcCCCCccchhHHHHHHHHHHHHHHHHHHHhCHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence            445555554444444445555566677777777766554322223333 66888999999999876

The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.

>PF05837 CENP-H: Centromere protein H (CENP-H); InterPro: IPR008426 Chromosome segregation in eukaryotes requires the kinetochore, a multi-protein structure that assembles on centromeric DNA, and which acts to link chromosomes to spindle microtubules

Probab=80.20  E-value=16  Score=28.27  Aligned_cols=45  Identities=22%  Similarity=0.252  Sum_probs=26.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHhHHH
Q 046677           29 KMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLEITLQKIH   73 (202)
Q Consensus        29 kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLqsLeqq~~   73 (202)
                      .+..+..+...+..+++.++.++..+...|.+|-..+..+.....
T Consensus         4 ~~~~~~~~~~~l~~~L~~v~~~~l~l~~~n~el~~el~~l~~~~~   48 (106)
T PF05837_consen    4 EILNLQQESRSLQEKLSDVEKKRLRLKRRNQELAQELLELAEKQK   48 (106)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            345556666666666666666666666666666665555444433

Kinetochore structure and composition is highly conserved among vertebrates. The inner kinetochore is essential for kinetochore assembly, and is involved in chromosome segregation via regulation of the spindle. Inner kinetochore components include the multi-subunit CENP-H/I complex, which may function, in part, in directing centromere protein A (CENP-A) deposition to centromeres, where CENP-A is a centromere-specific histone H3 variant required for the organisation of centromeric chromatin during interphase. The CENP-H/I complex contains three functional classes of proteins [, ]: CENP-H class (includes CENP-H, -I, -K, -L) CENP-M class (includes CENP-M) CENP-O class (includes CENP-O, -P, -Q, -R, -50) CENP-H is required for the localisation of CENP-C, but not CENP-A, to the centromere. However, it may be involved in the incorporation of newly synthesised CENP-A into centromeres via its interaction with the CENP-A/CENP-HI complex. CENP-H contains a coiled-coil structure and a nuclear localisation signal. CENP-H is specifically and constitutively localised in kinetochores throughout the cell cycle, and may play a role in kinetochore organisation and function throughout the cell cycle []. Studies show that CENP-H may be associated with certain human cancers [, ]. This entry also includes Kinetochore protein Fta3 which is a subunit of the Sim4 complex. This complex is required for loading the DASH complex onto the kinetochore via interaction with dad1. Fta2, Fta3 and Fta4 associate with the central core and inner repeat region of the centromere [].; GO: 0043515 kinetochore binding, 0007059 chromosome segregation, 0051301 cell division, 0000777 condensed chromosome kinetochore, 0005634 nucleus

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	202
1dh3_A	55	Transcription factor CREB; protein-DNA complex, tr	99.51
2wt7_A	63	Proto-oncogene protein C-FOS; transcription, trans	99.14
1t2k_D	61	Cyclic-AMP-dependent transcription factor ATF-2; p	99.13
1jnm_A	62	Proto-oncogene C-JUN; BZIP, protein-DNA complex, t	99.07
2dgc_A	63	Protein (GCN4); basic domain, leucine zipper, DNA	98.97
1gd2_E	70	Transcription factor PAP1; basic leucine zipper, p	98.94
1ci6_A	63	Transcription factor ATF-4; BZIP; 2.60A {Homo sapi	98.7
1gu4_A	78	CAAT/enhancer binding protein beta; transcription/	98.01
1hjb_A	87	Ccaat/enhancer binding protein beta; transcription	97.97
3a5t_A	107	Transcription factor MAFG; protein-DNA complex, BZ	97.81
2oqq_A	42	Transcription factor HY5; homodimer leucine zipper	97.65
2wt7_B	90	Transcription factor MAFB; transcription, transcri	97.6
2jee_A	81	YIIU; FTSZ, septum, coiled-coil, cell division, ce	96.53
2w6a_A	63	ARF GTPase-activating protein GIT1; PIX, zinc, sig	93.96
3s4r_A	93	Vimentin; alpha-helix, cytoskeleton, intermediate	93.92
3o0z_A	168	RHO-associated protein kinase 1; coiled-coil, tran	91.27
2oqq_A	42	Transcription factor HY5; homodimer leucine zipper	90.87
3ol1_A	119	Vimentin; structural genomics, PSI-2, protein stru	90.83
3hnw_A	138	Uncharacterized protein; coiled-coil, structural g	90.26
2jee_A	81	YIIU; FTSZ, septum, coiled-coil, cell division, ce	90.22
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	90.2
3efg_A	78	Protein SLYX homolog; xanthomonas campestris PV. c	89.33
3he5_A	49	Synzip1; heterodimeric coiled-coil, de novo protei	88.94
1go4_E	100	MAD1 (mitotic arrest deficient)-like 1; mitotic sp	88.53
3swy_A	46	Cyclic nucleotide-gated cation channel alpha-3; co	87.9
1hjb_A	87	Ccaat/enhancer binding protein beta; transcription	87.32
3a7p_A	152	Autophagy protein 16; coiled-coil, coiled coil, cy	86.88
1gu4_A	78	CAAT/enhancer binding protein beta; transcription/	86.77
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	84.47
3m48_A	33	General control protein GCN4; leucine zipper, synt	84.38
1deb_A	54	APC protein, adenomatous polyposis coli protein; c	83.49
3hnw_A	138	Uncharacterized protein; coiled-coil, structural g	82.95
3s9g_A	104	Protein hexim1; cyclin T-binding domain (TBD), cyc	82.53
1nkp_B	83	MAX protein, MYC proto-oncogene protein; transcrip	82.2
3swf_A	74	CGMP-gated cation channel alpha-1; coiled-coil, as	81.31
3o0z_A	168	RHO-associated protein kinase 1; coiled-coil, tran	81.25
2oxj_A	34	Hybrid alpha/beta peptide based on the GCN4-P1 Se	81.12
2v66_B	111	Nuclear distribution protein NUDE-like 1; structur	80.77
3a7p_A	152	Autophagy protein 16; coiled-coil, coiled coil, cy	80.31

>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1

Probab=99.51  E-value=2.7e-14  Score=98.94  Aligned_cols=50  Identities=28%  Similarity=0.386  Sum_probs=47.1

Q ss_pred             chhhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 046677            2 CHRIVANRMSAIRAKERKKLYIYMLEHKMHNLRSNSTTLTAQLTLLETES   51 (202)
Q Consensus         2 aKRiLaNReSAqRSReRKkqYI~ELE~kVq~LQ~ENa~LsaqltlLq~~~   51 (202)
                      .+|+++||+||++||.||+.|+++||.+|..|+.||..|..+++.|...+
T Consensus         3 ~rR~~~NResA~rSR~RKk~~~~~LE~~v~~L~~eN~~L~~~~~~L~~~~   52 (55)
T 1dh3_A            3 EVRLMKNREAARESRRKKKEYVKSLENRVAVLENQNKTLIEELKALKDLY   52 (55)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            47999999999999999999999999999999999999999999888765

>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D

Probab=99.14  E-value=1.7e-10  Score=81.17  Aligned_cols=53  Identities=21%  Similarity=0.349  Sum_probs=47.3

Q ss_pred             hhhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhH
Q 046677            3 HRIVANRMSAIRAKERKKLYIYMLEHKMHNLRSNSTTLTAQLTLLETESNSLD   55 (202)
Q Consensus         3 KRiLaNReSAqRSReRKkqYI~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~   55 (202)
                      +|+.+||+||+|||.||+.|+.+|+.+|..|+.+|..|..+|..|..+...|.
T Consensus         5 rrrerNR~AA~rcR~rKk~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk   57 (63)
T 2wt7_A            5 IRRERNKMAAAKCRNRRRELTDTLQAETDQLEDEKSALQTEIANLLKEKEKLE   57 (63)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            57889999999999999999999999999999999999999987666655443

>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1

Probab=99.13  E-value=2.2e-10  Score=79.77  Aligned_cols=53  Identities=30%  Similarity=0.473  Sum_probs=47.3

Q ss_pred             hhhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhH
Q 046677            3 HRIVANRMSAIRAKERKKLYIYMLEHKMHNLRSNSTTLTAQLTLLETESNSLD   55 (202)
Q Consensus         3 KRiLaNReSAqRSReRKkqYI~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~   55 (202)
                      +|+..||++|++||.||+.|+.+||.+|..|..+|..|..+|+.|..+...|.
T Consensus         4 ~r~erNr~AA~k~R~rKk~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk   56 (61)
T 1t2k_D            4 KFLERNRAAASRSRQKRKVWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLK   56 (61)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            57899999999999999999999999999999999999999987666655443

>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A

Probab=99.07  E-value=4e-10  Score=78.77  Aligned_cols=52  Identities=25%  Similarity=0.418  Sum_probs=47.1

Q ss_pred             hhhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhh
Q 046677            3 HRIVANRMSAIRAKERKKLYIYMLEHKMHNLRSNSTTLTAQLTLLETESNSL   54 (202)
Q Consensus         3 KRiLaNReSAqRSReRKkqYI~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L   54 (202)
                      +|...||+||++||.||+.|+.+||.+|..|..+|..|..+++.|..+...|
T Consensus         4 rrr~rNr~AA~k~R~rKk~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~L   55 (62)
T 1jnm_A            4 RKRMRNRIAASKSRKRKLERIARLEEKVKTLKAQNSELASTANMLREQVAQL   55 (62)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5678999999999999999999999999999999999999998777766554

>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D

Probab=98.97  E-value=1.4e-09  Score=77.04  Aligned_cols=48  Identities=25%  Similarity=0.261  Sum_probs=42.4

Q ss_pred             hhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 046677            4 RIVANRMSAIRAKERKKLYIYMLEHKMHNLRSNSTTLTAQLTLLETES   51 (202)
Q Consensus         4 RiLaNReSAqRSReRKkqYI~ELE~kVq~LQ~ENa~LsaqltlLq~~~   51 (202)
                      +...||+||+|||.||+.|+.+||.+|..|..+|..|..++..|....
T Consensus        13 KR~rNreAArrsR~RK~~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l   60 (63)
T 2dgc_A           13 KRARNTEAARRSRARKLQRMKQLEDKVEELLSKNYHLENEVARLKKLV   60 (63)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345699999999999999999999999999999999999888776543

>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1

Probab=98.94  E-value=2.4e-09  Score=77.68  Aligned_cols=61  Identities=23%  Similarity=0.270  Sum_probs=55.3

Q ss_pred             chhhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHH
Q 046677            2 CHRIVANRMSAIRAKERKKLYIYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLK   62 (202)
Q Consensus         2 aKRiLaNReSAqRSReRKkqYI~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK   62 (202)
                      .||...||.|++..|+||.+||.+||.+|..|+.++..|..++..|......|.+||..||
T Consensus        10 ~kR~~qNR~AQRafReRK~~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El~~lr   70 (70)
T 1gd2_E           10 SKRKAQNRAAQRAFRKRKEDHLKALETQVVTLKELHSSTTLENDQLRQKVRQLEEELRILK   70 (70)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHC-
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            4789999999999999999999999999999999999998888888888888888888765

>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1

Probab=98.70  E-value=4.3e-08  Score=69.06  Aligned_cols=52  Identities=19%  Similarity=0.263  Sum_probs=44.5

Q ss_pred             hhhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhh
Q 046677            3 HRIVANRMSAIRAKERKKLYIYMLEHKMHNLRSNSTTLTAQLTLLETESNSL   54 (202)
Q Consensus         3 KRiLaNReSAqRSReRKkqYI~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L   54 (202)
                      ++...||.+|+|+|.||+.++.+|+.+|..|+.+|..|..+|+.|+.++..|
T Consensus         5 rKr~rNr~AA~R~R~KKk~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~L   56 (63)
T 1ci6_A            5 KKMEQNKTAATRYRQKKRAEQEALTGECKELEKKNEALKERADSLAKEIQYL   56 (63)
T ss_dssp             ---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4567899999999999999999999999999999999999998776665544

>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A

Probab=98.01  E-value=2.5e-05  Score=57.55  Aligned_cols=48  Identities=19%  Similarity=0.303  Sum_probs=42.0

Q ss_pred             hhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 046677            4 RIVANRMSAIRAKERKKLYIYMLEHKMHNLRSNSTTLTAQLTLLETES   51 (202)
Q Consensus         4 RiLaNReSAqRSReRKkqYI~ELE~kVq~LQ~ENa~LsaqltlLq~~~   51 (202)
                      |-.+|.++|+|||++++.-..+++.+|..|+.||..|..+|..|..+.
T Consensus        19 rR~rNN~AakrSR~krk~r~~e~~~r~~~L~~eN~~L~~~v~~L~~E~   66 (78)
T 1gu4_A           19 RRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSREL   66 (78)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456899999999999999999999999999999999988887554443

>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1

Probab=97.97  E-value=3.4e-05  Score=57.87  Aligned_cols=42  Identities=17%  Similarity=0.315  Sum_probs=37.7

Q ss_pred             hhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046677            4 RIVANRMSAIRAKERKKLYIYMLEHKMHNLRSNSTTLTAQLT   45 (202)
Q Consensus         4 RiLaNReSAqRSReRKkqYI~ELE~kVq~LQ~ENa~Lsaqlt   45 (202)
                      |-.+|.++|+|||++++.-..+++.+|..|+.||..|..+|.
T Consensus        19 rR~rNN~AarrSR~krk~r~~e~~~r~~~Le~EN~~Lr~~v~   60 (87)
T 1hjb_A           19 RRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVE   60 (87)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            567899999999999999999999999999888888877765

>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus}

Probab=97.81  E-value=9.1e-07  Score=68.81  Aligned_cols=51  Identities=18%  Similarity=0.178  Sum_probs=40.2

Q ss_pred             chhhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 046677            2 CHRIVANRMSAIRAKERKKLYIYMLEHKMHNLRSNSTTLTAQLTLLETESN   52 (202)
Q Consensus         2 aKRiLaNReSAqRSReRKkqYI~ELE~kVq~LQ~ENa~LsaqltlLq~~~~   52 (202)
                      .||-++||.+|+++|.||+..+.+||.++..|+.+...|..++..+..+..
T Consensus        39 ~RR~lKNR~yAq~CR~rk~~~~~~LE~e~~~L~~e~e~L~~En~~l~~E~~   89 (107)
T 3a5t_A           39 RRRTLKNRGYAASCRVKRVTQKEELEKQKAELQQEVEKLASENASMKLELD   89 (107)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSTTTTTTSTTSHHHHTTT
T ss_pred             HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            368999999999999999999999999888777766666555544444433

>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}

Probab=97.65  E-value=7.6e-05  Score=49.60  Aligned_cols=35  Identities=26%  Similarity=0.510  Sum_probs=30.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhh
Q 046677           20 KLYIYMLEHKMHNLRSNSTTLTAQLTLLETESNSL   54 (202)
Q Consensus        20 kqYI~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L   54 (202)
                      +.|+.|||.+|..|+..|++|..+++.|++++.+|
T Consensus         2 KaYl~eLE~r~k~le~~naeLEervstLq~EN~mL   36 (42)
T 2oqq_A            2 SAYLSELENRVKDLENKNSELEERLSTLQNENQML   36 (42)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence            58999999999999999999999998776665544

>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A

Probab=97.60  E-value=0.00026  Score=53.51  Aligned_cols=59  Identities=20%  Similarity=0.189  Sum_probs=45.9

Q ss_pred             hhhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHH
Q 046677            3 HRIVANRMSAIRAKERKKLYIYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLEIT   68 (202)
Q Consensus         3 KRiLaNReSAqRSReRKkqYI~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLqsL   68 (202)
                      ||-++||.+|+-.|.||..-+.+||.++..|..+...|..+++.+       ..|-..+|.+.++|
T Consensus        30 RRtlKNRgyAq~CR~Kr~~q~~~LE~e~~~L~~e~~~L~~e~~~~-------~~e~d~~k~k~~~L   88 (90)
T 2wt7_B           30 RRTLKNRGYAQSCRYKRVQQKHHLENEKTQLIQQVEQLKQEVSRL-------ARERDAYKVKSEKL   88 (90)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHTT
T ss_pred             HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHh
Confidence            689999999999999999999999999888887777776665544       44455555555443

>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}

Probab=96.53  E-value=0.029  Score=41.68  Aligned_cols=68  Identities=22%  Similarity=0.311  Sum_probs=51.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH----HHHHHhccc
Q 046677           22 YIYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLEITLQKIHLQDSLNDQIRSEIQ----HMKTVLGEK   96 (202)
Q Consensus        22 YI~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLqsLeqq~~LkdaLnE~Lk~Evq----rLK~~~gei   96 (202)
                      -++.||.||+.+-..++-|.-++..|..++..|..+|.+++..-+.+       +..|+.|+.|..    ||+..+|.+
T Consensus         7 lleqLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L-------~~en~qLk~E~~~wq~Rl~~LLgk~   78 (81)
T 2jee_A            7 VFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREEL-------ERENNHLKEQQNGWQERLQALLGRM   78 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH-------HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            46789999999988888888888888888888888888887766555       345555555543    677776654

>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}

Probab=93.96  E-value=0.23  Score=35.30  Aligned_cols=40  Identities=28%  Similarity=0.371  Sum_probs=37.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHH
Q 046677           23 IYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLK   62 (202)
Q Consensus        23 I~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK   62 (202)
                      +.-=|.||+.|-.-|..|+.++..++.+...|.+||..||
T Consensus        22 LaaSeAkiQQLmkVN~~ls~Elr~mQ~~lq~LQsen~~Lr   61 (63)
T 2w6a_A           22 LATSEAKVQQLMKVNSSLSDELRKLQREIHKLQAENLQLR   61 (63)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHhhhhhhc
Confidence            4556899999999999999999999999999999999987

>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A

Probab=93.92  E-value=0.76  Score=34.12  Aligned_cols=64  Identities=16%  Similarity=0.246  Sum_probs=45.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhH-----hhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 046677           28 HKMHNLRSNSTTLTAQLTLLETESN-----SLDAEKAVLKHRLEITLQKIHLQDSLNDQIRSEIQHMKT   91 (202)
Q Consensus        28 ~kVq~LQ~ENa~LsaqltlLq~~~~-----~L~sEN~eLK~RLqsLeqq~~LkdaLnE~Lk~EvqrLK~   91 (202)
                      .||..|+.+|..|..++..+.....     .-.++-..||..|..+.....-.+...+.|.+++.++|.
T Consensus        23 dKVR~LEqqN~~Le~~i~~l~~~~~~~~~~~ye~~i~~Lr~~i~~~~~ek~~l~~e~dnl~~~~~~~k~   91 (93)
T 3s4r_A           23 DKVRFLEQQNKILLAELEQLKGQGKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLRE   91 (93)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            5899999999999999888876432     245677778877776655554444555567777777765

>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}

Probab=91.27  E-value=3.7  Score=33.91  Aligned_cols=55  Identities=16%  Similarity=0.203  Sum_probs=38.9

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHhH
Q 046677           10 MSAIRAKERKKLYIYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLEITLQK   71 (202)
Q Consensus        10 eSAqRSReRKkqYI~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLqsLeqq   71 (202)
                      +.=+|+|-+--.-+.||+.+|..|+.|...++...+.+.       .+|+.|-.++..+|..
T Consensus        79 ~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~~~k~~-------~e~r~L~Ekl~~lEKe  133 (168)
T 3o0z_A           79 EAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEKVE-------GERKEAQDMLNHSEKE  133 (168)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
Confidence            445677788888889999999999888888887776544       4555555555555443

>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}

Probab=90.87  E-value=0.77  Score=30.37  Aligned_cols=36  Identities=25%  Similarity=0.389  Sum_probs=24.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHH
Q 046677           30 MHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRL   65 (202)
Q Consensus        30 Vq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RL   65 (202)
                      |.+|+.....|..+++.|+.....|..||.-||+-+
T Consensus         5 l~eLE~r~k~le~~naeLEervstLq~EN~mLRqvl   40 (42)
T 2oqq_A            5 LSELENRVKDLENKNSELEERLSTLQNENQMLRHIL   40 (42)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHh
Confidence            456666677777777777777777777777666543

>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}

Probab=90.26  E-value=2.6  Score=33.28  Aligned_cols=53  Identities=17%  Similarity=0.107  Sum_probs=40.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHhH
Q 046677           19 KKLYIYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLEITLQK   71 (202)
Q Consensus        19 KkqYI~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLqsLeqq   71 (202)
                      .+....+|+..+..+..|...|+.++..++.....+..++.+|+.++..++.+
T Consensus        73 ~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~  125 (138)
T 3hnw_A           73 AKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKN  125 (138)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34557788888888888888888888888888888888888888777766543

>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}

Probab=90.22  E-value=1.2  Score=32.89  Aligned_cols=46  Identities=17%  Similarity=0.307  Sum_probs=30.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHH
Q 046677           23 IYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLEIT   68 (202)
Q Consensus        23 I~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLqsL   68 (202)
                      |.-|.-+|..|..+|..|..++..+......|..||..|+....+-
T Consensus        22 I~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~w   67 (81)
T 2jee_A           22 ITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGW   67 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence            4445556666666666666666666666666888888888755443

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=90.20  E-value=4  Score=36.90  Aligned_cols=75  Identities=11%  Similarity=0.104  Sum_probs=35.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcccCC
Q 046677           24 YMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLEITLQKIHLQDSLNDQIRSEIQHMKTVLGEKIP   98 (202)
Q Consensus        24 ~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLqsLeqq~~LkdaLnE~Lk~EvqrLK~~~gei~~   98 (202)
                      ..++.+.+.++.++..+...++...+++..+..|..+++.+++.......-..-.+..+++|+..|-..++.-|+
T Consensus       512 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~~~~~~~  586 (597)
T 3oja_B          512 THLKERQAFKLRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKKNRNPD  586 (597)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC----
T ss_pred             HHHHhhhhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence            334444444444445555555555555555556666666655554433332223344455555555555544443

>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}

Probab=89.33  E-value=0.95  Score=32.78  Aligned_cols=49  Identities=14%  Similarity=-0.005  Sum_probs=36.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHH
Q 046677           21 LYIYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLEITL   69 (202)
Q Consensus        21 qYI~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLqsLe   69 (202)
                      ..|.+||.++...+.....|...|+.-++..+.|..+...|..|+.+++
T Consensus        14 ~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~~~   62 (78)
T 3efg_A           14 ARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVR   62 (78)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC----
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            4688899999988888888888888888888777777777777666554

>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}

Probab=88.94  E-value=2.1  Score=28.54  Aligned_cols=21  Identities=24%  Similarity=0.419  Sum_probs=14.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q 046677           23 IYMLEHKMHNLRSNSTTLTAQ   43 (202)
Q Consensus        23 I~ELE~kVq~LQ~ENa~Lsaq   43 (202)
                      +..||.+|.+|++||.+|+.+
T Consensus         5 vaqlenevaslenenetlkkk   25 (49)
T 3he5_A            5 VAQLENEVASLENENETLKKK   25 (49)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhcccHHHHHh
Confidence            566777777777777666554

>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1

Probab=88.53  E-value=4.9  Score=30.65  Aligned_cols=22  Identities=14%  Similarity=0.229  Sum_probs=17.3

Q ss_pred             HHHHHHHHHHHHHHHHhcccCC
Q 046677           77 SLNDQIRSEIQHMKTVLGEKIP   98 (202)
Q Consensus        77 aLnE~Lk~EvqrLK~~~gei~~   98 (202)
                      -.-+.|.+||++||..+.-+-.
T Consensus        75 ~~~e~Lq~E~erLr~~v~~lEe   96 (100)
T 1go4_E           75 EDHSQLQAECERLRGLLRAMER   96 (100)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCC-
T ss_pred             HHHHHHHHHHHHHHHHHHHHhc
Confidence            4567789999999999977665

>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}

Probab=87.90  E-value=2.4  Score=28.26  Aligned_cols=44  Identities=30%  Similarity=0.343  Sum_probs=31.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHhH
Q 046677           25 MLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLEITLQK   71 (202)
Q Consensus        25 ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLqsLeqq   71 (202)
                      ++|.+|..|++-...|..+++.|-.++   .+-...||+|+..+|.+
T Consensus         2 dlEekv~~Le~~ld~LqTr~ArLlae~---~ssq~KlKqRit~lE~~   45 (46)
T 3swy_A            2 ALEEKVEQLGSSLDTLQTRFARLLAEY---NATQMKMKQRLSQLESQ   45 (46)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhc
Confidence            677778777777777766666554443   45567899999988864

>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1

Probab=87.32  E-value=6.1  Score=29.20  Aligned_cols=45  Identities=16%  Similarity=0.224  Sum_probs=30.9

Q ss_pred             HHHHHHHHHhhHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcccCCC
Q 046677           41 TAQLTLLETESNSLDAEKAVLKHRLEITLQKIHLQDSLNDQIRSEIQHMKTVLGEKIPN   99 (202)
Q Consensus        41 saqltlLq~~~~~L~sEN~eLK~RLqsLeqq~~LkdaLnE~Lk~EvqrLK~~~gei~~~   99 (202)
                      ..+...+......|..||..|+.+++              .|+.|+..|+..+-++|+.
T Consensus        35 k~r~~e~~~r~~~Le~EN~~Lr~~v~--------------~L~~E~~~Lr~ll~~~p~~   79 (87)
T 1hjb_A           35 KMRNLETQHKVLELTAENERLQKKVE--------------QLSRELSTLRNLFKQLPEP   79 (87)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHC----
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHCcHH
Confidence            34445666777788888888887665              4567889999999888874

>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}

Probab=86.88  E-value=3.4  Score=33.71  Aligned_cols=60  Identities=13%  Similarity=0.161  Sum_probs=24.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 046677           23 IYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLEITLQKIHLQDSLNDQI   82 (202)
Q Consensus        23 I~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLqsLeqq~~LkdaLnE~L   82 (202)
                      |..|+.+...|+.++..|...+..-......+..|.-.|..++..++....-....|..|
T Consensus        70 I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~L  129 (152)
T 3a7p_A           70 LAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQL  129 (152)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333333333333333333333344444444444444444444443333444443

>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A

Probab=86.77  E-value=5.7  Score=28.80  Aligned_cols=44  Identities=14%  Similarity=0.201  Sum_probs=29.3

Q ss_pred             HHHHHHHHHhhHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcccCC
Q 046677           41 TAQLTLLETESNSLDAEKAVLKHRLEITLQKIHLQDSLNDQIRSEIQHMKTVLGEKIP   98 (202)
Q Consensus        41 saqltlLq~~~~~L~sEN~eLK~RLqsLeqq~~LkdaLnE~Lk~EvqrLK~~~gei~~   98 (202)
                      ......+......|..||..|+.++..              |+.|+..||..+-.+|+
T Consensus        35 k~r~~e~~~r~~~L~~eN~~L~~~v~~--------------L~~E~~~Lr~ll~q~p~   78 (78)
T 1gu4_A           35 KMRNLETQHKVLELTAENERLQKKVEQ--------------LSRELSTLRNLFKQLPE   78 (78)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHTTTC----
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHCCC
Confidence            444556677778888888888876653              45788888888776663

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=84.47  E-value=11  Score=34.05  Aligned_cols=74  Identities=11%  Similarity=0.084  Sum_probs=47.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcccC
Q 046677           24 YMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLEITLQKIHLQDSLNDQIRSEIQHMKTVLGEKI   97 (202)
Q Consensus        24 ~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLqsLeqq~~LkdaLnE~Lk~EvqrLK~~~gei~   97 (202)
                      ..++..+..++...+.+..++...+++......+-..++.++..++....-.....+.++.|...++..+.+.-
T Consensus       505 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~  578 (597)
T 3oja_B          505 DNLNKVFTHLKERQAFKLRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLE  578 (597)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence            45555555555556666666666666655555666666666667777666666677778888887766665443

>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A

Probab=84.38  E-value=1.2  Score=28.12  Aligned_cols=27  Identities=26%  Similarity=0.319  Sum_probs=22.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046677           23 IYMLEHKMHNLRSNSTTLTAQLTLLET   49 (202)
Q Consensus        23 I~ELE~kVq~LQ~ENa~LsaqltlLq~   49 (202)
                      +..||.||..|-.+|+.|..++..|..
T Consensus         2 M~QLE~kVEeLl~~n~~Le~EV~RLk~   28 (33)
T 3m48_A            2 MAQLEAKVEELLSKNWNLENEVARLKK   28 (33)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            467999999999999999998877653

>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1

Probab=83.49  E-value=6.5  Score=27.05  Aligned_cols=40  Identities=18%  Similarity=0.234  Sum_probs=33.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHH
Q 046677           24 YMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKH   63 (202)
Q Consensus        24 ~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~   63 (202)
                      +.|-+.|..|..||+.|+.++..-......|++|-.-+|.
T Consensus         6 dQL~~QVe~Lk~ENshLrrEL~dNS~~lskLE~ets~mKe   45 (54)
T 1deb_A            6 DQLLKQVEALKMENSNLRQELEDNSNHLTKLETEASNMKE   45 (54)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHhhhhhHHH
Confidence            5788999999999999999988877777778777777665

>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}

Probab=82.95  E-value=12  Score=29.35  Aligned_cols=50  Identities=12%  Similarity=0.067  Sum_probs=29.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHH
Q 046677           20 KLYIYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLEITL   69 (202)
Q Consensus        20 kqYI~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLqsLe   69 (202)
                      ..-+.+++.++..|..+..++..++..+.++...|..++++|..++..++
T Consensus        81 ~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le  130 (138)
T 3hnw_A           81 SLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLE  130 (138)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455555666666666666666666666666666666666665555553

>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A

Probab=82.53  E-value=5.5  Score=30.70  Aligned_cols=40  Identities=25%  Similarity=0.311  Sum_probs=23.1

Q ss_pred             HHHHHHHHHHHHHHHHHHH-------HHHHHHHhhHhhHHHHHHHHH
Q 046677           24 YMLEHKMHNLRSNSTTLTA-------QLTLLETESNSLDAEKAVLKH   63 (202)
Q Consensus        24 ~ELE~kVq~LQ~ENa~Lsa-------qltlLq~~~~~L~sEN~eLK~   63 (202)
                      -+||.++..++.|+..|..       +|..|..+...|.+||..|+.
T Consensus        40 l~LE~~~s~le~e~~rlr~~~~~~~~~v~eLe~everL~~ENq~L~~   86 (104)
T 3s9g_A           40 LELEKSLSRMEDENNRLRLESKRLDARVRELELELDRLRAENLQLLT   86 (104)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHH
Confidence            3577788777777766654       444444444444444444443

>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B

Probab=82.20  E-value=2.5  Score=29.99  Aligned_cols=22  Identities=23%  Similarity=0.347  Sum_probs=11.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q 046677           20 KLYIYMLEHKMHNLRSNSTTLT   41 (202)
Q Consensus        20 kqYI~ELE~kVq~LQ~ENa~Ls   41 (202)
                      ..||..|..++..|+.+...|.
T Consensus        46 i~YI~~L~~~~~~l~~e~~~L~   67 (83)
T 1nkp_B           46 TEYIQYMRRKNHTHQQDIDDLK   67 (83)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            3455555555555544444333

>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}

Probab=81.31  E-value=5.5  Score=29.02  Aligned_cols=47  Identities=21%  Similarity=0.264  Sum_probs=32.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHhHHH
Q 046677           24 YMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLEITLQKIH   73 (202)
Q Consensus        24 ~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLqsLeqq~~   73 (202)
                      .+||.+|..|+.-...|..+++.|-.++   .+-...||+||..+|....
T Consensus         3 ~dlEEKv~~LE~sld~LQTrfARLLaEy---~ssQ~KLKqRit~LE~~~~   49 (74)
T 3swf_A            3 MGLEEKVTRMESSVDLLQTRFARILAEY---ESMQQKLKQRLTKVEKFLK   49 (74)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhc
Confidence            4577777777777777766666554443   4556789999999986544

>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}

Probab=81.25  E-value=22  Score=29.35  Aligned_cols=71  Identities=18%  Similarity=0.238  Sum_probs=34.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHh-----HHHHH--HHHHHHHHHHHHHHHHHhc
Q 046677           24 YMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLEITLQ-----KIHLQ--DSLNDQIRSEIQHMKTVLG   94 (202)
Q Consensus        24 ~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLqsLeq-----q~~Lk--daLnE~Lk~EvqrLK~~~g   94 (202)
                      .|+-..++.++..+..|...+..|+.....|.-+...|...|..=..     ...+.  ..-...|..|+.++|....
T Consensus        37 tEl~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~~~  114 (168)
T 3o0z_A           37 TEMSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLE  114 (168)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45555555555555555555555555555555555444443322110     01111  1234566777777776553

>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*

Probab=81.12  E-value=3  Score=26.41  Aligned_cols=26  Identities=23%  Similarity=0.254  Sum_probs=21.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046677           23 IYMLEHKMHNLRSNSTTLTAQLTLLE   48 (202)
Q Consensus        23 I~ELE~kVq~LQ~ENa~LsaqltlLq   48 (202)
                      +..||.||..|-.+|..|..++..|.
T Consensus         3 MnQLE~kVEeLl~~n~~Le~eV~rLk   28 (34)
T 2oxj_A            3 MXQLEXKVXELLXKNXHLEXEVXRLK   28 (34)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence            67899999999988888888877664

>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}

Probab=80.77  E-value=9.2  Score=29.55  Aligned_cols=47  Identities=21%  Similarity=0.214  Sum_probs=26.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHH
Q 046677           23 IYMLEHKMHNLRSNSTTLTAQLTLLETESNSLDAEKAVLKHRLEITL   69 (202)
Q Consensus        23 I~ELE~kVq~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~RLqsLe   69 (202)
                      +..|+.++..|...+..|...|-.|+..++.|.-..+..-.-|+.++
T Consensus        37 ~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t~~SLeD~E   83 (111)
T 2v66_B           37 VSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIVSLEDFE   83 (111)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHhhHHHHH
Confidence            44455555555555555566666566666555555555555444443

>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}

Probab=80.31  E-value=17  Score=29.58  Aligned_cols=32  Identities=19%  Similarity=0.190  Sum_probs=13.5

Q ss_pred             HHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHH
Q 046677           32 NLRSNSTTLTAQLTLLETESNSLDAEKAVLKH   63 (202)
Q Consensus        32 ~LQ~ENa~LsaqltlLq~~~~~L~sEN~eLK~   63 (202)
                      .|+.|...|..++..++.....|..||..|-.
T Consensus       100 ~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~  131 (152)
T 3a7p_A          100 RLNAALISGTIENNVLQQKLSDLKKEHSQLVA  131 (152)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33334444444444444444444444444433

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00