Citrus Sinensis ID: 046689

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200---
Protein Sequence
MRREGRQHGMVRTYRIAPSPWNPRPDARTVNKFDSPPTCGLFTKVSQRPTNHSKFTGKCGRARCVDCHMHPACKSKDKTKGTHKLINSRGLVSNYKMITWRVVDGRPGLNFSGLSATEMLDHLASDYVDDNVDDDDDEANDVYDHNGRYDQRDHEHEIKEAVRRNDDDDDNANDEDQDVMGYYDVAFDQVNEEDEGWCLLGEI
Secondary Structure (PSIPRED)
cccccccccEEEEEEEccccccccccccccccccccccccccEEEccccccccccccccccccccccccccccccccccccccEEccccccccccEEEEEEEEcccccccccccHHHHHHHHHcccccccccccccccccccccccccccccccHHHHHHHHHccccccccccccccccccEEEEEccccccccccEEEEEcc
Secondary Structure Prediction (SSPRO)
cccccccccEEEEEccccccccccccccHHcccccccccccEEEccccccccccccccccccccccccccccccccccccccHHHccccccccccEEEEEEEEccccccccccccHHHHHHHHccccccccccccccccccccccccEEEEEEEccccHHHcEEccccccccccccccccccEEccEEEEcccccccEEEEcc
Coil and Loop (DISEMBL)
mrregrqhgmvrtyriapspwnprpdartvnkfdspptcglftkvsqrptnhskftgkcgrarcvdchmhpackskdktkgthklinsrglvsnykMITWRVvdgrpglnfsglsATEMLDHLAsdyvddnvdddddeandvydhngrydqrdhEHEIKEAVrrndddddnandedqdvmgYYDVAFDqvneedegwcllgei
Flexible Loop (DISEMBL)
mrregrqhgmvrtyriapspwnprpDARTVNKFDSPPTCglftkvsqrptnhskftgkCGRARCVDCHMhpackskdktkgthklinsrglvsnykMITWRVVDGRPGLNFSGLSATEMLDHLASDYVDDNVDDDDDEANDVYdhngrydqrdheheikeavrrndddddnanDEDQDVMGYYDVAFDQVNEEDEGWCLLGEI
Low Complexity Region (SEG)
MRREGRQHGMVRTYRIAPSPWNPRPDARTVNKFDSPPTCGLFTKVSQRPTNHSKFTGKCGRARCVDCHMHPACKSKDKTKGTHKLINSRGLVSNYKMITWRVVDGRPGLNFSGLSATEMLDHLASdyvddnvdddddeandvydHNGRYDQRDHEHEIKEAVRRndddddnandedqdVMGYYDVAFDQVNEEDEGWCLLGEI
Disordered region (IsUnstruct)
**************************************CGLFTK*********KFTGKCGRARCVDCHMHPACKS***TKGTHKLINSRGLVSNYKMITWRVVDGRPGLNFSGLSATEMLDHLASDYV**************************************************VMGYYDVAFDQVNEEDEGWCLL***
Disordered Region (DISOPRED)
*****RQHGMVRTYRIAPS*************FDSPPTCGLFTKVSQ***********CGRARCVDCH*******************SRGLVSNYKMITWRVVDGRPGLNFSGLSATEMLDHLASDYVDDNVDDDDDEANDVYDHNGRYDQRDHEHEIKEAV**************QDVMGYYDVAFDQVNEEDEGWCLLGEI
Disordered Region (DISEMBL)
*********MVRTYRIAPSPWNPRPDARTVNKFDSPPTCGLFTKVSQRPTNHSKFTGKCGRARCVDCHMHPACKSKDKTKGTHKLINSRGLVSNYKMITWRVVDGRPGLNFSGLSATEMLDHLASDYVDDNVDDDDDEANDVYDHNGRYDQRDHEHEIKEAVRRNDDDDDNANDEDQDVMGYYDVAFDQVNEEDEGWCLLGEI
Disordered Region (DISPRO)
*******HGMVRTYRIAPSPWN***D*R**NKFDSPPTCGLFTKVS*****************C**C*****CK*******THKLINSRGLVSNYKMITWRVVDGRPGLNFSGLSATEMLDHLASDYVDDNVDDDDDEANDVYDHNGRYDQRDHEHEIKEAVRRNDD***NANDEDQDVMGYYDVAFDQVNEEDEGWCLLGEI
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MRREGRQHGMVRTYRIAPSPWNPRPDARTVNKFDSPPTCGLFTKVSQRPTNHSKFTGKCGRARCVDCHMHPACKSKDKTKGTHKLINSRGLVSNYKMITWRVVDGRPGLNFSGLSATEMLDHLASDYVDDNVDDDDDEANDVYDHNGRYDQRDHEHEIKEAVRRNDDDDDNANDEDQDVMGYYDVAFDQVNEEDEGWCLLGEI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	203
225452220	218	PREDICTED: uncharacterized protein LOC10	0.960	0.894	0.508	2e-53
255571994	180	hypothetical protein RCOM_0530890 [Ricin	0.876	0.988	0.551	3e-51
288930248	191	hypothetical protein [Solanum lycopersic	0.921	0.979	0.526	3e-49
224060203	197	predicted protein [Populus trichocarpa]	0.945	0.974	0.507	1e-47
297805602	213	hypothetical protein ARALYDRAFT_493913 [	0.916	0.873	0.445	2e-42
15237472	210	uncharacterized protein [Arabidopsis tha	0.940	0.909	0.472	3e-40
21536928	209	unknown [Arabidopsis thaliana]	0.940	0.913	0.461	4e-40
110737092	210	hypothetical protein [Arabidopsis thalia	0.940	0.909	0.472	4e-40
224055649	120	predicted protein [Populus trichocarpa]	0.566	0.958	0.603	2e-37
296081319	127	unnamed protein product [Vitis vinifera]	0.487	0.779	0.68	1e-34

>gi|225452220|ref|XP_002268221.1| PREDICTED: uncharacterized protein LOC100256024 [Vitis vinifera]

 Score =  214 bits (545), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 115/226 (50%), Positives = 152/226 (67%), Gaps = 31/226 (13%)

Query: 1   MRREGRQHGMVRTYRIAPSPWNPRPDARTVNKFDSPPTCGLFTKVSQRPTNHSKFTGKCG 60
           M+REGRQHGMVR+YRI P PWNP    R VN+FDSPPT G+FTKVS +PTNHSKFTG C 
Sbjct: 1   MKREGRQHGMVRSYRILPPPWNPNSQERFVNRFDSPPTAGVFTKVSSKPTNHSKFTGACC 60

Query: 61  RARCVDCHMHPACKSKDKTKGTHKLINSRGLVSNYKMITWRVVDGRPGLNFSGLSATEML 120
           R +C+DCH+ PACKSK KTKGT K+   R +VSN+++ITWR+V+G+PGLNF+G+SATE+L
Sbjct: 61  RTKCLDCHLLPACKSKGKTKGTQKM-KPRDMVSNHRLITWRLVEGKPGLNFNGISATEVL 119

Query: 121 DHLA-SDYVDDNV--DDDDDEANDVYDHNGRYDQRDHEHEIKEAVRRNDDDDDNANDEDQ 177
           DHL+  D+ DD    D+D+DE    YD  G YD    E +I+++     DD   A +++ 
Sbjct: 120 DHLSREDFYDDQYYNDEDEDEVEACYD--GHYD----EEKIEDSGHACPDDGPMAEEKEI 173

Query: 178 DVMG------------------YYDVAF--DQVNEEDEGWCLLGEI 203
           +  G                  +Y+V F  +QV+  DEGWCL+ E+
Sbjct: 174 EAGGIQISGESDECDVDDDDNSFYEVGFVWEQVD-GDEGWCLVREM 218

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255571994|ref|XP_002526938.1| hypothetical protein RCOM_0530890 [Ricinus communis] gi|223533690|gb|EEF35425.1| hypothetical protein RCOM_0530890 [Ricinus communis]

 Score =  207 bits (526), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 113/205 (55%), Positives = 140/205 (68%), Gaps = 27/205 (13%)

Query: 1   MRREGRQHGMVRTYRIAPSPWNPRPDARTVNKFDSPPTCGLFTKVSQRPTNHSKFTGKCG 60
           M+REGRQHGMVRT RI PSPWNPRPD+R +N+FDSPPT GLFTKV  RPTNHSKFTGKCG
Sbjct: 1   MKREGRQHGMVRTCRILPSPWNPRPDSRFINRFDSPPTAGLFTKVLPRPTNHSKFTGKCG 60

Query: 61  RARCVDCHMHPACKSKDKTKGTHKLINSRGLVSNYKMITWRVVDGRPGLNFSGLSATEML 120
           + RC  CHMHP+CKSKDKTKGT KL  S  ++SNY++++WRVVDG+PGLNFSG SA+ +L
Sbjct: 61  KPRCNGCHMHPSCKSKDKTKGTQKL-KSHDVLSNYRLMSWRVVDGKPGLNFSGFSASRIL 119

Query: 121 DHLASDYVDDNVDDDDDEANDVYDHNGRYDQRDHEHEIKEAVRRNDDDDDNANDEDQDVM 180
           DH+  D                       ++   + + +E +  N DD D+ + +D D  
Sbjct: 120 DHMDDD-----------------------ERYVDDDDYEETIAANVDDGDDDDIDDGDDT 156

Query: 181 GYYDVAF--DQVNEEDEGWCLLGEI 203
            Y DV F  DQV E DE WCL+ E+
Sbjct: 157 SYCDVGFLLDQV-EGDEDWCLVAEL 180

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|288930248|gb|ADC68622.1| hypothetical protein [Solanum lycopersicum] gi|365222884|gb|AEW69794.1| Hop-interacting protein THI031 [Solanum lycopersicum]

 Score =  200 bits (508), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 109/207 (52%), Positives = 133/207 (64%), Gaps = 20/207 (9%)

Query: 1   MRREGRQHGMVRTYRIAPSPWNPRPDARTVNKFDSPPTCGLFTKVSQRPTNHSKFTGKCG 60
           MRREGRQHGMVRTY I PSPWNPRP+ R +NK +SPPT GLF KV  +P+NHSKFTGKCG
Sbjct: 1   MRREGRQHGMVRTYPILPSPWNPRPEPRYMNKSNSPPTAGLFAKVPTKPSNHSKFTGKCG 60

Query: 61  RARCVDCHMHPACKSKDKTKGTHKLINSRGLVSNYKMITWRVVDGRPGLNFSGLSATEML 120
           R RC  CH+HPA KSKDKTKGT KL     +VS   ++TWRVVD RPG NFSG SAT +L
Sbjct: 61  RPRCTSCHVHPAAKSKDKTKGTQKLKGCGDVVS---LVTWRVVDARPGFNFSGFSATGIL 117

Query: 121 DHLASDYVDDNVDDDDDEANDVYDHNGRYDQRDHEHEIKEAVRRNDDDDD---NANDEDQ 177
           DHL SD            ++   DH   YD+ D+ +  +E V  +D          D D+
Sbjct: 118 DHLDSD------------SSYYMDHEIYYDE-DYGYGDQELVVDSDGSPAIGVEIEDNDE 164

Query: 178 DVMGYYDVAFDQVN-EEDEGWCLLGEI 203
           + M + +V F   + EEDE WC++  I
Sbjct: 165 EKMSFCEVGFVWEDVEEDEDWCVVEGI 191

Source: Solanum lycopersicum

Species: Solanum lycopersicum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224060203|ref|XP_002300083.1| predicted protein [Populus trichocarpa] gi|222847341|gb|EEE84888.1| predicted protein [Populus trichocarpa]

 Score =  194 bits (494), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 104/205 (50%), Positives = 134/205 (65%), Gaps = 13/205 (6%)

Query: 1   MRREGRQHGMVRTYRIAPSPWNPRPDA-RTVNKFDSPPTCGLFTKVSQRPTNHSKFTGKC 59
           MRREGR HGMVR Y + P PWNP+P   R  NKFD+P T GLFTKVS +PTNHSKFTGKC
Sbjct: 1   MRREGRPHGMVRAYAVLPPPWNPKPGGDRKFNKFDTPTTAGLFTKVSSKPTNHSKFTGKC 60

Query: 60  GRARCVDCHMHPACKSKDKTKGTHKLINSRGLV-SNYKMITWRVVDGRPGLNFSGLSATE 118
           G+ RC++CH+ P CK+K KTKG+HK+ +   L  SN + I WRVV+GR G N SG SAT 
Sbjct: 61  GKPRCLECHLQPCCKAKHKTKGSHKVKSQDVLSNSNAQFIAWRVVNGRHGSNLSGFSATG 120

Query: 119 MLDHLASDYVDDNVDDDDDEANDVYDHNGRYDQRDHEHEIKEAVRRNDDDDDNANDEDQD 178
           ML+HLAS    D+ D+ DD     ++++  +   D E+ I + V       +  N E++D
Sbjct: 121 MLNHLASTGDHDHADEVDDSG---HENDQEFVDDDDENYIGDGV-------NIKNIEEED 170

Query: 179 VMGYYDVAFD-QVNEEDEGWCLLGE 202
            M Y DV F+  + E DE WCL+ E
Sbjct: 171 GMSYCDVGFEVDLAEGDEDWCLVAE 195

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297805602|ref|XP_002870685.1| hypothetical protein ARALYDRAFT_493913 [Arabidopsis lyrata subsp. lyrata] gi|297316521|gb|EFH46944.1| hypothetical protein ARALYDRAFT_493913 [Arabidopsis lyrata subsp. lyrata]

 Score =  177 bits (449), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 102/229 (44%), Positives = 129/229 (56%), Gaps = 43/229 (18%)

Query: 1   MRREGRQHGMVRTYRIAPSPWNPRPDARTVNKFDSPPTCGLFTKVSQRPTNHSKFTGKCG 60
           M+REG+QHGMVRTYRI P   NPRP+++ VN   S PT GLFTKV+ +PTNHSKFTGKCG
Sbjct: 1   MKREGKQHGMVRTYRILPPSLNPRPESKLVNPLTSRPTAGLFTKVTSKPTNHSKFTGKCG 60

Query: 61  RARCVDCHMHPACKSKDKTKGTHKLINSRGLVSNYKMITWRVVDG--RPGLNFSGLSATE 118
           +ARC+DCHMHP  KSK KTKG+ K+   R     YKM+TW+V  G  RPGL  SG SAT 
Sbjct: 61  QARCLDCHMHPITKSKAKTKGSSKV---RSNDVTYKMLTWQVAAGGPRPGLKLSGFSATG 117

Query: 119 MLDHLASDYVDDNVDDDDDEANDVYDHN------GRYDQRDHEHEIKEAVRRNDDDDDNA 172
           +LD ++ DY               YDH+         ++ +    ++E V+    DDD  
Sbjct: 118 ILDLMSDDY--------------GYDHDYEDDEEDEEEEENRASVVEEIVKIQSSDDDGE 163

Query: 173 NDED--------------QDVMGYYDVA----FDQVNEEDEGWCLLGEI 203
            +ED                 M + DV      D V E DEGW L+ E+
Sbjct: 164 TEEDGSHDDDDDDDDTDDDGRMSFCDVGMMMMMDHVEEYDEGWYLVEEM 212

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15237472|ref|NP_198885.1| uncharacterized protein [Arabidopsis thaliana] gi|9758097|dbj|BAB08541.1| unnamed protein product [Arabidopsis thaliana] gi|94442475|gb|ABF19025.1| At5g40690 [Arabidopsis thaliana] gi|332007199|gb|AED94582.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  170 bits (431), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 104/220 (47%), Positives = 129/220 (58%), Gaps = 29/220 (13%)

Query: 1   MRREGRQHGMVRTYRIAPSPWNPRPDARTVNKFDSPPTCGLFTKVSQRPTNHSKFTGKCG 60
           M+REG+QHGMVRTYRI P   NPRP+++ VN   S PT GLFTKV+ +PTNHSKFTGKCG
Sbjct: 1   MKREGKQHGMVRTYRILPPSLNPRPESKLVNPLTSRPTAGLFTKVTSKPTNHSKFTGKCG 60

Query: 61  RARCVDCHMHPACKSKDKTKGTHKLINSRGLVSNYKMITWRVVDG--RPGLNFSGLSATE 118
           +ARC+DCHMHP  KSK KTKG+ K+   R     YKM+TW+V  G  RPGL  SG SAT 
Sbjct: 61  QARCLDCHMHPVTKSKAKTKGSSKV---RTNDVTYKMLTWQVAAGGPRPGLKLSGFSATG 117

Query: 119 MLDHLASDYVDDNVDDDDDEANDVYDHNGRYDQRDHEHEIKEAVRRNDDDDDNANDED-- 176
           +LD L SD    + D D DE N+  ++ G          ++E V     DD    +E+  
Sbjct: 118 ILD-LMSDDYGYDHDYDYDEENEEEENRGSV--------VEEVVNIQSSDDGGETEEEGS 168

Query: 177 ---------QDVMGYYDVA----FDQVNEEDEGWCLLGEI 203
                       M + DV      D V E DEGW L+ E+
Sbjct: 169 NDDDDDTDDDGRMSFCDVGMMMMMDHVEEYDEGWYLVEEM 208

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21536928|gb|AAM61260.1| unknown [Arabidopsis thaliana]

 Score =  170 bits (430), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 101/219 (46%), Positives = 130/219 (59%), Gaps = 28/219 (12%)

Query: 1   MRREGRQHGMVRTYRIAPSPWNPRPDARTVNKFDSPPTCGLFTKVSQRPTNHSKFTGKCG 60
           M+REG+QHGMVRTYRI P   NPRP+++ VN   S PT GLFTKV+ +PT+HSKFTGKCG
Sbjct: 1   MKREGKQHGMVRTYRILPPSLNPRPESKLVNPLTSRPTAGLFTKVTSKPTSHSKFTGKCG 60

Query: 61  RARCVDCHMHPACKSKDKTKGTHKLINSRGLVSNYKMITWRVVDG--RPGLNFSGLSATE 118
           +ARC++CHMHP  KSK KTKG+ K+   R     YKM+TW+V  G  RPG+  SG SAT 
Sbjct: 61  QARCLECHMHPVTKSKAKTKGSSKV---RTNDVTYKMLTWQVAAGGPRPGMKLSGFSATG 117

Query: 119 MLDHLASDYVDDNVDDDDDEANDVYDHNGRYDQRDHEHEIKEAVRRNDDDDDNANDED-- 176
           +LD L SD    + D D DE ++  ++ G          ++E V+    DD    +ED  
Sbjct: 118 ILD-LMSDDYGYDHDYDYDEEDEEEENRGSV--------VEEVVKIQSSDDGGETEEDGS 168

Query: 177 --------QDVMGYYDVA----FDQVNEEDEGWCLLGEI 203
                      M + DV      D V E DEGW L+ E+
Sbjct: 169 HDDDDTDDDGRMSFCDVGMMMMMDHVEEYDEGWYLVEEM 207

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|110737092|dbj|BAF00498.1| hypothetical protein [Arabidopsis thaliana]

 Score =  169 bits (429), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 104/220 (47%), Positives = 129/220 (58%), Gaps = 29/220 (13%)

Query: 1   MRREGRQHGMVRTYRIAPSPWNPRPDARTVNKFDSPPTCGLFTKVSQRPTNHSKFTGKCG 60
           M+REG+QHGMVRTYRI P   NPRP+++ VN   S PT GLFTKV+ +PTNHSKFTGKCG
Sbjct: 1   MKREGKQHGMVRTYRILPPSLNPRPESKLVNPLTSRPTAGLFTKVTSKPTNHSKFTGKCG 60

Query: 61  RARCVDCHMHPACKSKDKTKGTHKLINSRGLVSNYKMITWRVVDG--RPGLNFSGLSATE 118
           +ARC+DCHMHP  KSK KTKG+ K+   R     YKM+TW+V  G  RPGL  SG SAT 
Sbjct: 61  QARCLDCHMHPVTKSKAKTKGSSKV---RTNDVTYKMLTWQVAAGGPRPGLKLSGFSATG 117

Query: 119 MLDHLASDYVDDNVDDDDDEANDVYDHNGRYDQRDHEHEIKEAVRRNDDDDDNANDED-- 176
           +LD L SD    + D D DE N+  ++ G          ++E V     DD    +E+  
Sbjct: 118 ILD-LMSDDYCYDHDYDYDEENEEEENRGSV--------VEEVVDIQSSDDGGETEEEGS 168

Query: 177 ---------QDVMGYYDVA----FDQVNEEDEGWCLLGEI 203
                       M + DV      D V E DEGW L+ E+
Sbjct: 169 NDDDDDTDDDGRMSFCDVGMMMMMDHVEEYDEGWYLIEEM 208

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224055649|ref|XP_002298584.1| predicted protein [Populus trichocarpa] gi|222845842|gb|EEE83389.1| predicted protein [Populus trichocarpa]

 Score =  161 bits (407), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 76/126 (60%), Positives = 91/126 (72%), Gaps = 11/126 (8%)

Query: 1   MRREGRQHGMVRTYRIAPSPWNPRPDARTVNKFDSPPTCGLFTKVSQRPTNHSKFTGKCG 60
           M+REGR HGMVRTY I PSPWN +P  +  NKFD+PPT GLF+KV  +PTNHSKFTGKC 
Sbjct: 1   MKREGRPHGMVRTYTILPSPWNSKPSDKKFNKFDAPPTAGLFSKVPSKPTNHSKFTGKCS 60

Query: 61  RARCVDCHMHPACKSKDKTKGTHKLINSRGLVSNYKMITWRVVDGRPGLNFSGLSATEML 120
           + RC  CHMHP+CKSKDKTKG+HK      + S+ +++TW          FSG SAT ML
Sbjct: 61  KPRCTGCHMHPSCKSKDKTKGSHK------VKSHDRVMTWGAA-----FEFSGFSATAML 109

Query: 121 DHLASD 126
           DHLA+D
Sbjct: 110 DHLATD 115

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296081319|emb|CBI17701.3| unnamed protein product [Vitis vinifera]

 Score =  151 bits (382), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 68/100 (68%), Positives = 81/100 (81%), Gaps = 1/100 (1%)

Query: 1   MRREGRQHGMVRTYRIAPSPWNPRPDARTVNKFDSPPTCGLFTKVSQRPTNHSKFTGKCG 60
           M+REGRQHGMVR+YRI P PWNP    R VN+FDSPPT G+FTKVS +PTNHSKFTG C 
Sbjct: 1   MKREGRQHGMVRSYRILPPPWNPNSQERFVNRFDSPPTAGVFTKVSSKPTNHSKFTGACC 60

Query: 61  RARCVDCHMHPACKSKDKTKGTHKLINSRGLVSNYKMITW 100
           R +C+DCH+ PACKSK KTKGT K+   R +VSN+++ITW
Sbjct: 61  RTKCLDCHLLPACKSKGKTKGTQKM-KPRDMVSNHRLITW 99

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	203
TAIR|locus:2168753	210	AT5G40690 [Arabidopsis thalian	0.581	0.561	0.626	1.5e-41
TAIR|locus:2054411	119	AT2G41730 "AT2G41730" [Arabido	0.403	0.689	0.505	1.8e-16
TAIR|locus:2153949	118	AT5G24640 "AT5G24640" [Arabido	0.399	0.686	0.458	1.8e-14

TAIR|locus:2168753 AT5G40690 [Arabidopsis thaliana (taxid:3702)]

 Score = 408 (148.7 bits), Expect = 1.5e-41, Sum P(2) = 1.5e-41
 Identities = 77/123 (62%), Positives = 93/123 (75%)

Query:     1 MRREGRQHGMVRTYRIAPSPWNPRPDARTVNKFDSPPTCGLFTKVSQRPTNHSKFTGKCG 60
             M+REG+QHGMVRTYRI P   NPRP+++ VN   S PT GLFTKV+ +PTNHSKFTGKCG
Sbjct:     1 MKREGKQHGMVRTYRILPPSLNPRPESKLVNPLTSRPTAGLFTKVTSKPTNHSKFTGKCG 60

Query:    61 RARCVDCHMHPACKSKDKTKGTHKLINSRGLVSNYKMITWRVVDG--RPGLNFSGLSATE 118
             +ARC+DCHMHP  KSK KTKG+ K + +  +   YKM+TW+V  G  RPGL  SG SAT 
Sbjct:    61 QARCLDCHMHPVTKSKAKTKGSSK-VRTNDVT--YKMLTWQVAAGGPRPGLKLSGFSATG 117

Query:   119 MLD 121
             +LD
Sbjct:   118 ILD 120

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0008150 "biological_process" evidence=ND

GO:0005737 "cytoplasm" evidence=IDA

TAIR|locus:2054411 AT2G41730 "AT2G41730" [Arabidopsis thaliana (taxid:3702)]

 Score = 204 (76.9 bits), Expect = 1.8e-16, P = 1.8e-16
 Identities = 43/85 (50%), Positives = 53/85 (62%)

Query:     1 MRREGRQHGMVRTYRIAPSPWNPRPDARTVNKFDSPPTCGLFTKVSQRPTNHSKFTGKCG 60
             M+ EGR  G+VRT  I P  +NPRP   T N+ DSPP  G FTKV  + TNHS  TG+  
Sbjct:     1 MKSEGRHQGIVRTGMIHPRGFNPRP---TSNRLDSPPAFGDFTKVPSKTTNHSNTTGESE 57

Query:    61 RARCVDCHMHPACKSKDKTKGTHKL 85
             R++   CH+ PA KS  K+KG  KL
Sbjct:    58 RSKYSHCHVSPAIKSGHKSKGRRKL 82

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0009061 "anaerobic respiration" evidence=IEP;IMP

GO:0005737 "cytoplasm" evidence=IDA

TAIR|locus:2153949 AT5G24640 "AT5G24640" [Arabidopsis thaliana (taxid:3702)]

 Score = 185 (70.2 bits), Expect = 1.8e-14, P = 1.8e-14
 Identities = 39/85 (45%), Positives = 51/85 (60%)

Query:     1 MRREGRQHGMVRTYRIAPSPWNPRPDARTVNKFDSPPTCGLFTKVSQRPTNHSKFTGKCG 60
             M+ EGR  G+VRT  I P  +NPR      N+ DSPP  G FTK+  + TNHS   G+  
Sbjct:     1 MKSEGRHQGVVRTGMIHPRGFNPRH----TNRLDSPPVFGDFTKMQPKTTNHSNIIGESE 56

Query:    61 RARCVDCHMHPACKSKDKTKGTHKL 85
             R++  +CH+ PA KS  K+KG  KL
Sbjct:    57 RSKYSNCHVSPAIKSGHKSKGRRKL 81


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.320   0.136   0.439    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      203       170   0.00086  108 3  11 22  0.39    32
                                                     31  0.47    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  608 (65 KB)
  Total size of DFA:  177 KB (2102 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  13.72u 0.10s 13.82t   Elapsed:  00:00:04
  Total cpu time:  13.72u 0.10s 13.82t   Elapsed:  00:00:04
  Start:  Mon May 20 21:00:54 2013   End:  Mon May 20 21:00:58 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00020589001 SubName- Full=Chromosome chr14 scaffold_21, whole genome shotgun sequence; (218 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	203
pfam07093	557	pfam07093, SGT1, SGT1 protein	0.002

>gnl|CDD|219293 pfam07093, SGT1, SGT1 protein

 Score = 38.5 bits (90), Expect = 0.002
 Identities = 21/76 (27%), Positives = 35/76 (46%)

Query: 128 VDDNVDDDDDEANDVYDHNGRYDQRDHEHEIKEAVRRNDDDDDNANDEDQDVMGYYDVAF 187
             D+ D+DDDE +D  D +  +D+ +    +K  +   DD+ DN   +D D     D   
Sbjct: 436 FADDEDEDDDEPDDSEDKDVSFDEDEFFEFLKNMLGLKDDEIDNDLPDDSDDADEDDDED 495

Query: 188 DQVNEEDEGWCLLGEI 203
           D  +E+      L E+
Sbjct: 496 DDEDEDSSSDSTLEEL 511

This family consists of several eukaryotic SGT1 proteins. Human SGT1 or hSGT1 is known to suppress GCR2 and is highly expressed in the muscle and heart. The function of this family is unknown although it has been speculated that SGT1 may be functionally analogous to the Gcr2p protein of Saccharomyces cerevisiae which is known to be a regulatory factor of glycolytic gene expression. Length = 557

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

No hit with probability above 80.00

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00