Citrus Sinensis ID: 046695

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600----
Protein Sequence
MGHSKMKRMESRKSHSWWWDSHISPKNSKWLAENLEEMDQSVKRMLKLIEEDGDSFAKKAEMYYQKRPELISHVEEFYRMYRSLAERYDHVTGELRKNIPSDLQSQGSGISDISSELPSMCPSPDQRPSRRKSGPRAAGFDFFLGSAGSSAEFYPKEGDESSSISDSESESDSSSVNNYSAFAGNGDDQGLQRKVNELETELREAKEKLHSQEERIADESMKGAKNENPEALFARIVGYEKKLRLANEKIHISNEEILRLKIELQKYNSSETNNYLQADFGSPAEINVNMWDAELQEGINGLETPSLDLDNKVKALMEELRITKEKLMLSEAEIASLKQEVESNRSEKIQTLQNQLQLAQKDIATWKSKLNSERKEVSKLQERIKSLKTSLSDRDHEVRDLKMAVSDAEQKIFPEKAQIKAEILGLYEEKACLVEQLREWESRGRSLEDELRIIKTQKTELEERIVGEIEQLKASIAERDKHIENLNRSLDSLKAERDRLESDVISRDDRMDQMEKHLQQLHMEHTELIKGAEDAHRMVGELRLKAKELEEEIEKQRVVILEGAEEKREAIRQLCFSLEHYRSGYISLRKAVIGHKGVAVLTSC
Secondary Structure (PSIPRED)
ccccccccccccccHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHcccccHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHcccHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEc
Coil and Loop (DISEMBL)
mghskmkrmesrkshswwwdshispknsKWLAENLEEMDQSVKRMLKLIEEDGDSFAKKAEMYYQKRPELISHVEEFYRMYRSLAERYDHVTGelrknipsdlqsqgsgisdisselpsmcpspdqrpsrrksgpraagfdfflgsagssaefypkegdesssisdsesesdsssvnnysafagngddqglQRKVNELETELREAKEKLHSQEERIADEsmkgaknenpEALFARIVGYEKKLRLANEKIHISNEEILRLKIELQKYnssetnnylqadfgspaeinVNMWDAELQEgingletpsldlDNKVKALMEELRITKEKLMLSEAEIASLKQEVESNRSEKIQTLQNQLQLAQKDIATWKSKLNSERKEVSKLQERIKSLKTSLSDRDHEVRDLKMAVSDAEQKIFPEKAQIKAEILGLYEEKACLVEQLREWESRGRSLEDELRIIKTQKTELEERIVGEIEQLKASIAERDKHIENLNRSLDSLKAERDRlesdvisrdDRMDQMEKHLQQLHMEHTELIKGAEDAHRMVGELRLKAKELEEEIEKQRVVILEGAEEKREAIRQLCFSLEHYRSGYISLRKAVIGHKGVAVLTSC
Flexible Loop (DISEMBL)
mghskmkrmesrkshswwwdshispkNSKWLAENLEEMDQSVKRMLKLIEEDGDSFAKKAEMYYQKRPELISHVEEFYRMYRSLAERYDHVTGELRKnipsdlqsqgsgISDISSELPSMCPSPDQRPSRRKSGPRAAGFDFFLGSAGSSAEFYPKEGDESSSISDSESESDSSSVNNYSAfagngddqglQRKVNELETELREakeklhsqeeriadesmkgaknenpEALFARIVGYEKKLRLANEKIHISNEEILRLKIELQKYNSSETNNYLQADFGSPAEINVNMWDAELQEGINGletpsldldNKVKALMEELRITKEKLMLSEAEIASLKQEVESNRSEKIQTLQNQLQLAQKDIATWksklnserkevskLQERIKslktslsdrdhevrDLKMAvsdaeqkifpeKAQIKAEILGLYEEKACLVEQLREwesrgrsledelRIIKtqkteleerivGEIEQLKASIAERDKHIENLnrsldslkaerdrlesdvisrddrMDQMEKHLQQLHMEHTELIKGAEDAHRMVGELRLKAKELEEEIEKQRVVILEGAEEKREAIRQLCFSLEHYRSGYISLRKAVIGHKGVAVLTSC
Low Complexity Region (SEG)
MGHSKMKRMESRKSHSWWWDSHISPKNSKWLAENLEEMDQSVKRMLKLIEEDGDSFAKKAEMYYQKRPELISHVEEFYRMYRSLAERYDHVTGELRKNIPSDLqsqgsgisdissELPSMCPSPDQRPSRRKSGPRAAGFDFFLGSAGSSAEFYPKEGdesssisdsesesdsssVNNYSAFAGNGDDQGLQRKVNELETELREAKEKLHSQEERIADESMKGAKNENPEALFARIVGYEKKLRLANEKIHISNEEILRLKIELQKYNSSETNNYLQADFGSPAEINVNMWDAELQEGINGLETPSLDLDNKVKALMEELRITKEKLMLSEAEIASLKQEVESNRSEKIQTLQNQLQLAQKDIATWKSKLNSERKEVSKLQERIKSLKTSLSDRDHEVRDLKMAVSDAEQKIFPEKAQIKAEILGLYEEKACLVEQLREWESRGRSLEDELRIIKTQKTELEERIVGEIEQLKASIAERDKHIENLNRSLDSLKAERDRLESDVISRDDRMDQMEKHLQQLHMEHTELIKGAEDAHRMVGelrlkakeleeeiekQRVVILEGAEEKREAIRQLCFSLEHYRSGYISLRKAVIGHKGVAVLTSC
Disordered region (IsUnstruct)
****************WWWDSHIS****KWL****************LI******FAKKAEMYYQKRPELISHVEEFYRMYRSLAERYDHVTG************************************************FF***************************************************************************************ALFARIVGYEKKLRLANEKIHISNEEILRLKIELQKYNSSETNNYLQADFGSPAEINVNMWDAELQEGINGLETPSLDLDNKVKALMEELRI*****************************************************************************************IFPEKAQIKAEILGLYEEKACLVEQLREWESR******ELRIIKT*******RIVGEI*************************************************************************************KQRVVILEGAEEKREAIRQLCFSLEHYRSGYISLRKAVIGHKGVAVL***
Disordered Region (DISOPRED)
****************WWW*********************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************IGHKGVAVLTSC
Disordered Region (DISEMBL)
****************WWWDSHISPKNSKWLAENLEEMDQSVKRMLKLIEEDGDSFAKKAEMYYQKRPELISHVEEFYRMYRSLAERYDHVTGELRKNIPSDLQSQGSGISDISSE*******************RAAGFDFFLGSAGSSAEFY*********************VNNYSAFAGNGDDQGLQRKVNELETELREAKEKLHSQEERIADESMKGAKNENPEALFARIVGYEKKLRLANEKIHISNEEILRLKIELQKYNSSETNNYLQADFGSPAEINVNMWDAELQEGINGLETPSLDLDNKVKALMEELRITKEKLMLSEAEIASLKQEVESNRSEKIQTLQNQLQLAQKDIATWKSKL************RIKSLKTSLSDRDHEVRDLKMAVSDAEQKIFPEKAQIKAEILGLYEEKACLVEQLREWESRGRSLEDELRIIKTQKTELEERIVGEIEQLKASIAERDKHIENLNRSLDSLKAERDRLESDVISRDDRMDQMEKHLQQLHMEHTELIKGAEDAHRMVGELRLKAKELEEEIEKQRVVILEGAEEKREAIRQLCFSLEHYRSGYISLRKAVIGHKGVAVLTSC
Disordered Region (DISPRO)
*************SHSWWWDSHISPKNSKWLAENLEEMDQSVKRMLKLIEEDGDSFAKKAEMYYQKRPELISHVEEFYRMYRSLAERYDHVTGELRKNIPSD**************************************************************************NNYSA*AGNGDDQGLQRKVNELETELREAKEKLHSQEERIADESMKGAKNENPEALFARIVGYEKKLRLANEKIHISNEEILRLKIELQKYNSSETNNYLQADFGSPAEINVNMWDAELQEGINGLETPSLDLDNKVKALMEELRITKEKLMLSEAEIASLKQEVESNRSEKIQTLQNQLQLAQKDIATWKSKLNSERKEVSKLQERIKSLKTSLSDRDHEVRDLKMAVSDAEQKIFPEKAQIKAEILGLYEEKACLVEQLREWESRGRSLEDELRIIKTQKTELEERIVGEIEQLKASIAERDKHIENLNRSLDSLKAERDRLESDVISRDDRMDQMEKHLQQLHMEHTELIKGAEDAHRMVGELRLKAKELEEEIEKQRVVILEGAEEKREAIRQLCFSLEHYRSGYISLRKAVIGHKGVAVLTSC
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
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Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGHSKMKRMESRKSHSWWWDSHISPKNSKWLxxxxxxxxxxxxxxxxxxxxxGDSFAKKAEMYYQKRPELISHVEEFYRMYRSLAERYDHVTGELRKNIPSDLQSQGSGISDISSELPSMCPSPDQRPSRRKSGPRAAGFDFFLGSAGSSAEFYPKEGDESSSISDSESESDSSSVNNYSAFAGNGDxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGAKNENPEALFARIVGYEKKLRLANEKIHISNEEILRLKIELQKYNSSETNNYLQADFGSPAEINVNMWDAELQEGINGLETPSLDLDNKxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxKxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxLSDRDHEVRDLKMAVSDAEQKIFPEKAQIKAEILGLYEExxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxIVGExxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxVISRDDRMDQMEKHLQQLHMEHTELIKGxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxKREAIRQLCFSLEHYRSGYISLRKAVIGHKGVAVLTSC
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	604
255565935	628	RAB6-interacting protein, putative [Rici	0.988	0.950	0.661	0.0
449439197	620	PREDICTED: uncharacterized protein LOC10	0.973	0.948	0.605	0.0
356500946	621	PREDICTED: uncharacterized protein LOC10	0.986	0.959	0.602	0.0
224145419	613	predicted protein [Populus trichocarpa]	0.973	0.959	0.613	0.0
356553178	623	PREDICTED: uncharacterized protein LOC10	0.983	0.953	0.594	0.0
357491507	604	Viral A-type inclusion protein repeat co	0.963	0.963	0.577	0.0
225434325	617	PREDICTED: uncharacterized protein LOC10	0.950	0.930	0.563	1e-164
356569434	531	PREDICTED: uncharacterized protein LOC10	0.869	0.988	0.491	1e-122
343171972	566	kinase interacting (KIP1-like) family pr	0.908	0.969	0.464	1e-115
8777333	589	unnamed protein product [Arabidopsis tha	0.877	0.899	0.466	1e-115

>gi|255565935|ref|XP_002523956.1| RAB6-interacting protein, putative [Ricinus communis] gi|223536803|gb|EEF38443.1| RAB6-interacting protein, putative [Ricinus communis]

 Score =  789 bits (2037), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 409/618 (66%), Positives = 487/618 (78%), Gaps = 21/618 (3%)

Query: 6   MKRMESRKSHSWWWDSHISPKNSKWLAENLEEMDQSVKRMLKLIEEDGDSFAKKAEMYYQ 65
           MKR++SRKSHSWWWDSH+SPKNSKWLAENLEEMD+SV+RMLKLIEEDGDSFAKKAEMYYQ
Sbjct: 12  MKRLQSRKSHSWWWDSHVSPKNSKWLAENLEEMDRSVRRMLKLIEEDGDSFAKKAEMYYQ 71

Query: 66  KRPELISHVEEFYRMYRSLAERYDHVTGELRKNIPSDLQSQGSGISDISSELPSMCPS-- 123
           KRPEL+S VEEFYRMYRSLAERYDHVTGELRKNIPSDLQSQ SGISDI SEL S  PS  
Sbjct: 72  KRPELVSLVEEFYRMYRSLAERYDHVTGELRKNIPSDLQSQSSGISDIGSELTSTWPSPV 131

Query: 124 PDQRPSRRKSGPRAAGFDFFLGSAGSSAEFYPKEGDESSSISDSESESDSSSVNNYSAFA 183
           P+QR S RK G RAAGFDFFLGS GSS++   KEGDESS+++DSE ESD SSVNNYS   
Sbjct: 132 PEQRLSHRKPGNRAAGFDFFLGSGGSSSDL-QKEGDESSTLTDSEPESDDSSVNNYSVLL 190

Query: 184 GNGDDQGLQRKVNELETELREAKEKLHSQEERIADESMKGAKNENPEALFARIVGYEKKL 243
           GNG D  L RKV ELE ELRE K++L  Q+E   D S +GA+NEN E L ARI GYE++L
Sbjct: 191 GNGGDNALSRKVIELEIELREMKDRLQMQQEDNGDGSYRGARNENFEYLLARIAGYEQEL 250

Query: 244 RLANEKIHISNEEILRLKIELQKYNSSETNNYLQADFGSPAEINVNMWDAELQ------- 296
           ++AN+ I  S EE+ RL IEL +Y S E  N LQ +F S  + NV   D+EL+       
Sbjct: 251 KIANQSIQHSEEEVARLNIELHRYKSLEAVNSLQKEFISSKDENVKTEDSELESEITQAS 310

Query: 297 ---EGINGLETPSLDLDNKVKALMEELRITKEKLMLSEAEIASLKQEVESNR-SEKIQTL 352
              E  +GLE  ++D D+K++AL +ELRITKEKL  +E EIASLK ++ESNR SEK+  L
Sbjct: 311 KLKENTDGLEAGTVDSDSKIRALTDELRITKEKLQYAEKEIASLKLQLESNRPSEKVDNL 370

Query: 353 QNQLQLAQKDIATWKSKLNSERKEVSKLQERIKSLKTSLSDRDHEVRDLKMAVSDAEQKI 412
           Q+QL LA KDI TWK++LN+E++EVSKLQERI  L+TSLSDRDHE+RDLK+AVSDAEQKI
Sbjct: 371 QDQLILAHKDINTWKTRLNAEKREVSKLQERIARLRTSLSDRDHEIRDLKLAVSDAEQKI 430

Query: 413 FPEKAQIKAEILGLYEEKACLVEQLREWESRGRSLEDELRIIKTQKTELEERIVGEIEQL 472
           FPEKAQIKAEI  L EE+  L EQLREWESR R LED++R ++T+K+E EER   EI QL
Sbjct: 431 FPEKAQIKAEISKLLEERTSLDEQLREWESRCRCLEDDIRKLQTEKSETEERHYSEINQL 490

Query: 473 KASIAERDKHIENLNRSLDSLKAERDR-------LESDVISRDDRMDQMEKHLQQLHMEH 525
           KA   ERD HIENLN+SL++LK ERD        L++D+ISRDD+++QM+ HLQQLHMEH
Sbjct: 491 KAETVERDCHIENLNKSLNALKLERDALNAQVVLLKADIISRDDQINQMDNHLQQLHMEH 550

Query: 526 TELIKGAEDAHRMVGELRLKAKELEEEIEKQRVVILEGAEEKREAIRQLCFSLEHYRSGY 585
            ELI GAE+A ++V  LR KA +LE+E+E+Q++ I EGAEEKREAIRQLCFSLEHYR+GY
Sbjct: 551 VELIAGAEEARKLVYTLRSKANDLEKEVERQKIAITEGAEEKREAIRQLCFSLEHYRNGY 610

Query: 586 ISLRKAVIGHKGVAVLTS 603
             LRKA + HK + VL +
Sbjct: 611 HRLRKAFVEHKRLPVLVT 628

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449439197|ref|XP_004137373.1| PREDICTED: uncharacterized protein LOC101208541 isoform 1 [Cucumis sativus] gi|449439199|ref|XP_004137374.1| PREDICTED: uncharacterized protein LOC101208541 isoform 2 [Cucumis sativus] gi|449528361|ref|XP_004171173.1| PREDICTED: uncharacterized LOC101208541 isoform 1 [Cucumis sativus] gi|449528363|ref|XP_004171174.1| PREDICTED: uncharacterized LOC101208541 isoform 2 [Cucumis sativus]

 Score =  699 bits (1804), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 376/621 (60%), Positives = 465/621 (74%), Gaps = 33/621 (5%)

Query: 5   KMKRMESRKSHSWWWDSHISPKNSKWLAENLEEMDQSVKRMLKLIEEDGDSFAKKAEMYY 64
           K KR+ESRKSHSWWWDSH+SPKNS+WL ENLEEMD+S+KRMLKLIEED DSFAKKAEMYY
Sbjct: 11  KFKRLESRKSHSWWWDSHVSPKNSRWLTENLEEMDRSIKRMLKLIEEDADSFAKKAEMYY 70

Query: 65  QKRPELISHVEEFYRMYRSLAERYDHVTGELRKNIPSDLQSQGSGISDISSELPSMCPSP 124
           QKRP LISHVEEFYRMYRSLAERYDHVTGELRKNIPSDLQSQGSGISD+ SE PS  PSP
Sbjct: 71  QKRPVLISHVEEFYRMYRSLAERYDHVTGELRKNIPSDLQSQGSGISDLGSEPPSTWPSP 130

Query: 125 DQRPSRRKSGPRAAGFDFFLGSAGSSAEFYPKEGDESSSISDSESESDSSSVNNYSAFAG 184
           DQR  RRKSGPRAAGFDFFLGS GS+++   KEGDESSS+++SE ESD SSVNNYS    
Sbjct: 131 DQRLGRRKSGPRAAGFDFFLGSGGSNSDTCQKEGDESSSLTESEPESDDSSVNNYS---- 186

Query: 185 NGDDQGLQRKVNELETELREAKEKLHSQEERI-ADESMKGAKNENPEALFARIVGYEKKL 243
            G DQGL RK+ ELE ELREAKEKL  + +        KGA +EN + +FARI GYE++L
Sbjct: 187 -GGDQGLNRKMIELEIELREAKEKLRMKADNAEGSFPFKGAADENSDYVFARIAGYEEEL 245

Query: 244 RLANEKIHISNEEILRLKIELQKYNSSETNNYLQADF-------------GSPAEINVNM 290
           R ANEK+ IS+ +I+RLK ELQKY  S     LQ +              G P  IN   
Sbjct: 246 RNANEKLRISDVQIMRLKSELQKYRESVMTKGLQVESLSDTMEETQRHEDGVPLVIN--- 302

Query: 291 WDAELQEGINGLETPSLDLDNKVKALMEELRITKEKLMLSEAEIASLKQEVESNRS-EKI 349
            ++E+ E   G      D    V+ L+EE +ITKE+L +S+ E++ LK E+E+NRS EKI
Sbjct: 303 QESEVDEHHRG---SGADHAITVEGLVEEQKITKERLEISQKELSKLKLELENNRSPEKI 359

Query: 350 QTLQNQLQLAQKDIATWKSKLNSERKEVSKLQERIKSLKTSLSDRDHEVRDLKMAVSDAE 409
             LQN+L+ A+KD  TWK+KL++ER+EVSKLQERI  LK SLSDRDHE+RDLK+AVSDAE
Sbjct: 360 CHLQNELEAARKDTTTWKAKLSAERREVSKLQERISRLKASLSDRDHEIRDLKLAVSDAE 419

Query: 410 QKIFPEKAQIKAEILGLYEEKACLVEQLREWESRGRSLEDELRIIKTQKTELEERIVGEI 469
           QKIFPEKAQ+KAE+  L EE+  L+EQ+RE E R R LEDE+R IK +K +LEER+ GEI
Sbjct: 420 QKIFPEKAQVKAEMSKLLEEQTVLMEQVRESEHRARLLEDEIRKIKGEKVDLEERLNGEI 479

Query: 470 EQLKASIAERDKHIENLNRSLDSLKAERDRLESDVI-------SRDDRMDQMEKHLQQLH 522
           E+L+ +I E+ + +E     L+ L++ERD+L+ +++       S+D ++D + KH+++L 
Sbjct: 480 ERLETTIVEKVECMEYFKNGLNDLESERDQLQDEIVALKEKLRSKDKQVDDIRKHVEKLE 539

Query: 523 MEHTELIKGAEDAHRMVGELRLKAKELEEEIEKQRVVILEGAEEKREAIRQLCFSLEHYR 582
            E  EL+ G + A ++  +LRL+ KELE E+EKQR++I+EGAEEKREAIRQLCFS+EHYR
Sbjct: 540 RERVELVSGIDKADKVAEKLRLREKELEGEVEKQRILIMEGAEEKREAIRQLCFSIEHYR 599

Query: 583 SGYISLRKAVIGHKGVAVLTS 603
           SGY  LR+  IG K V VL S
Sbjct: 600 SGYHMLREVFIGQKRVPVLAS 620

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356500946|ref|XP_003519291.1| PREDICTED: uncharacterized protein LOC100816215 [Glycine max]

 Score =  695 bits (1793), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 370/614 (60%), Positives = 470/614 (76%), Gaps = 18/614 (2%)

Query: 5   KMKRMESRKSHSWWWDSHISPKNSKWLAENLEEMDQSVKRMLKLIEEDGDSFAKKAEMYY 64
           +M+R+ESRKSHSWWWDSHISPKNSKWL+ENLEEMD+SVKRMLKLIEED DSFAKKAEMYY
Sbjct: 11  QMRRLESRKSHSWWWDSHISPKNSKWLSENLEEMDRSVKRMLKLIEEDADSFAKKAEMYY 70

Query: 65  QKRPELISHVEEFYRMYRSLAERYDHVTGELRKNIPSDLQSQGSGISDISSELPSMCPSP 124
           QKRPEL++ VEEFYR+YR+LAERYDHVTGELRKNIPSDLQSQGSGISD  SE  S  PSP
Sbjct: 71  QKRPELVALVEEFYRVYRALAERYDHVTGELRKNIPSDLQSQGSGISDAGSEPSSTWPSP 130

Query: 125 D-QRPSRRKSGPRAAGFDFFLGSAGSSAEFYPKEGDESSSISDSESESDSSSVNNYSAFA 183
             +R  R KS  RAAGF++FLGS+G+  + Y K+GDESS+++DSE ESD SSVNNYS F+
Sbjct: 131 TPKRGGRLKSSTRAAGFEYFLGSSGNGTDVYQKDGDESSTLTDSEEESDDSSVNNYSGFS 190

Query: 184 GNGDDQGLQRKVNELETELREAKEKLHSQEERIADESMKGAKNENPEALFARIVGYEKKL 243
            NG D G+ R++ ELETELRE KEKL  QEE  AD S +G++NEN E L+ +I  YE++L
Sbjct: 191 RNGSDLGINRRIMELETELREVKEKLWMQEEEHADGSTRGSRNENTEDLYTKINAYEQEL 250

Query: 244 RLANEKIHISNEEILRLKIELQKYNSSETNNYLQADF-GSPAEINVNMWD-----AELQE 297
              NEK+ +S EEI + KIELQKY    T N L+A F  S  + ++N         E++ 
Sbjct: 251 MTVNEKLRLSEEEITKQKIELQKYRLFNTEN-LEAGFESSLTKKHINEGGEAHKMIEVEG 309

Query: 298 GINGLETPSLDLDNKVKALMEELRITKEKLMLSEAEIASLKQEVESNR-SEKIQTLQNQL 356
            I+G++    D + +++ L  ELRITKE L  SE +I SLK   E+N+ SE+IQ L +QL
Sbjct: 310 SIDGVDKELFDQNGEIETLARELRITKENLKASEMQITSLK--FEANKSSERIQQLHDQL 367

Query: 357 QLAQKDIATWKSKLNSERKEVSKLQERIKSLKTSLSDRDHEVRDLKMAVSDAEQKIFPEK 416
           +LA+KDI+TWK+K NSE++E +KL ER+  L+TSLSDRDHE+RDLK  VSDAEQKIFPEK
Sbjct: 368 ELARKDISTWKTKFNSEKRESTKLHERLARLRTSLSDRDHEIRDLKTEVSDAEQKIFPEK 427

Query: 417 AQIKAEILGLYEEKACLVEQLREWESRGRSLEDELRIIKTQKTELEERIVGEIEQLKASI 476
           AQ+K+E+  + EE+  L EQ+REWESRGR  ED++R I+++K E+EE + GEI+ LKA I
Sbjct: 428 AQLKSEMSKVLEERTHLEEQIREWESRGRCFEDDIRRIQSEKMEMEEALKGEIQLLKAGI 487

Query: 477 AERDKHIENLNRSLDSLKAERDR-------LESDVISRDDRMDQMEKHLQQLHMEHTELI 529
            +R+ +I+ LN S+D+LK E+D        L+ +V SRD R++ +  HL +LH+EH +LI
Sbjct: 488 EQRENNIKELNTSIDTLKLEKDNLHVEVGSLKEEVNSRDGRIEHLNSHLNELHVEHVQLI 547

Query: 530 KGAEDAHRMVGELRLKAKELEEEIEKQRVVILEGAEEKREAIRQLCFSLEHYRSGYISLR 589
            G E+AH+ V EL+ KAK+LEEE+E+QR VILEGAEEKREAIRQLCFSLEHYR GY  LR
Sbjct: 548 AGMEEAHKHVEELKSKAKQLEEEVERQRTVILEGAEEKREAIRQLCFSLEHYRDGYNMLR 607

Query: 590 KAVIGHKGVAVLTS 603
           + V+GH+ V VL +
Sbjct: 608 QHVMGHRRVPVLAA 621

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224145419|ref|XP_002325636.1| predicted protein [Populus trichocarpa] gi|222862511|gb|EEF00018.1| predicted protein [Populus trichocarpa]

 Score =  690 bits (1780), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 376/613 (61%), Positives = 463/613 (75%), Gaps = 25/613 (4%)

Query: 6   MKRMESRKSHSWWWDSHISPKNSKWLAENLEEMDQSVKRMLKLIEEDGDSFAKKAEMYYQ 65
            K +++RKSHSWWWDSHISPKNSKW  ENLEEMDQSVKRMLKLIEEDGDSFAKKAEMYYQ
Sbjct: 11  FKGLQTRKSHSWWWDSHISPKNSKWHTENLEEMDQSVKRMLKLIEEDGDSFAKKAEMYYQ 70

Query: 66  KRPELISHVEEFYRMYRSLAERYDHVTGELRKNIPSDLQSQGSGISDISSELPSMCPSPD 125
           KRPELISHVEEFYRMYRSLAERYDHVT ELRK+IPSDLQSQGSGISD+  E PS  P+ +
Sbjct: 71  KRPELISHVEEFYRMYRSLAERYDHVTEELRKSIPSDLQSQGSGISDVIFEPPS--PARE 128

Query: 126 QRPSRRKSGPRAAGFDFFLGSAGSSAEFYPKEGDESSSISDSESESDSSSVNNYSAFAGN 185
            +PSR K GPRAAGFDFFLGS G S + + KE DE S+++DSESESD SSVNNYS  +GN
Sbjct: 129 LKPSRLKPGPRAAGFDFFLGSGG-SGDRHHKEVDELSTLTDSESESDDSSVNNYSGLSGN 187

Query: 186 GDDQGLQRKVNELETELREAKEKLHSQEERIADESMKGAKNENPEALFARIVGYEKKLRL 245
             DQGL R++ +LE ELRE KEKL  Q++   D S +G +NE+ E + A + G E+ L +
Sbjct: 188 SGDQGLSRRIIDLEIELRETKEKLRMQQDESVDGSFRGVRNEDSEDVLAELTGCERDLTI 247

Query: 246 ANEKIHISNEEILRLKIELQKYNSSETNNYLQADFGSPAEINVNMWDAE----------L 295
           ANE++ +S EE+ RL  ELQKY SSE +  LQ++F SPAE  V   + E          L
Sbjct: 248 ANEELRLSEEEVTRLNTELQKYRSSEVSVGLQSEFASPAESKVTTREVELEFEVNQASHL 307

Query: 296 QEGINGLETPSLDLDNKVKALMEELRITKEKLMLSEAEIASLKQEVE-SNRSEKIQTLQN 354
           Q+ I G E  +LD + K++ALMEELRI KE+L +SE EI +LK+++E    SEKI  LQ+
Sbjct: 308 QQRIGGSEAETLDSNVKIQALMEELRIAKERLHVSEKEITTLKKQLEGGGPSEKINNLQD 367

Query: 355 QLQLAQKDIATWKSKLNSERKEVSKLQERIKSLKTSLSDRDHEVRDLKMAVSDAEQKIFP 414
           QL LA  +I T K+KLN+E++EVSKLQER   LKT+LSDRD EVRDLK+AVSDAE KIFP
Sbjct: 368 QLALAHMEINTLKNKLNAEKREVSKLQERTARLKTNLSDRDREVRDLKIAVSDAELKIFP 427

Query: 415 EKAQIKAEILGLYEEKACLVEQLREWESRGRSLEDELRIIKTQKTELEERIVGEIEQLKA 474
           EKAQIKAEI  L EE  CL E+L+E ESR RSLED +R+ + +K E++E +  EI++LK 
Sbjct: 428 EKAQIKAEISKLIEEGTCLEERLKEQESRCRSLEDGIRMFQAEKAEMQETLEREIQKLKE 487

Query: 475 SIAERDKHIEN----LNRSLDSLKAERDRLESDVISRDDRMDQMEKHLQQLHMEHTELIK 530
             AERD  I++    LN    +LKAE       V SRD+ ++QM+KHLQQL MEH +L+ 
Sbjct: 488 DTAERDSRIKSERDELNEKAITLKAE-------VTSRDNPVNQMDKHLQQLRMEHVKLLA 540

Query: 531 GAEDAHRMVGELRLKAKELEEEIEKQRVVILEGAEEKREAIRQLCFSLEHYRSGYISLRK 590
           GAE+A +++ ELR KAK+LE E+E+QR++ILEGAEEKREAIRQLC +LEHYR+ Y +LR+
Sbjct: 541 GAEEARKLMDELRSKAKDLEGEVERQRILILEGAEEKREAIRQLCLTLEHYRNSYHTLRQ 600

Query: 591 AVIGHKGVAVLTS 603
           A  GHKGV VL +
Sbjct: 601 AFAGHKGVPVLAT 613

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356553178|ref|XP_003544935.1| PREDICTED: uncharacterized protein LOC100819525 [Glycine max]

 Score =  683 bits (1763), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 365/614 (59%), Positives = 465/614 (75%), Gaps = 20/614 (3%)

Query: 5   KMKRMESRKSHSWWWDSHISPKNSKWLAENLEEMDQSVKRMLKLIEEDGDSFAKKAEMYY 64
           +M+R+ESRKSHSWWWDSHISPKNSKWL ENLEEMD+SVKRMLKLIEED DSFAKKAEMYY
Sbjct: 11  QMRRLESRKSHSWWWDSHISPKNSKWLFENLEEMDRSVKRMLKLIEEDADSFAKKAEMYY 70

Query: 65  QKRPELISHVEEFYRMYRSLAERYDHVTGELRKNIPSDLQSQGSGISDISSELPSMCPSP 124
           QKRPEL++ VEEFYR+YR+LAERYDHVTGELRKNIPSDLQSQGSGISD  SE  S  PSP
Sbjct: 71  QKRPELVALVEEFYRVYRALAERYDHVTGELRKNIPSDLQSQGSGISDAGSEPSSTWPSP 130

Query: 125 DQRPSRR-KSGPRAAGFDFFLGSAGSSAEFYPKEGDESSSISDSESESDSSSVNNYSAFA 183
             +  RR KSG RAAGF++FLG++G+  + Y K+GDESS+++DSE ESD SSVNNY  F+
Sbjct: 131 TPKRGRRFKSGTRAAGFEYFLGTSGNGTDVYQKDGDESSTLTDSEEESDDSSVNNYLGFS 190

Query: 184 GNGDDQGLQRKVNELETELREAKEKLHSQEERIADESMKGAKNENPEALFARIVGYEKKL 243
            NG D G+ R++ ELETELRE KEKL  QEE   D S +G+++EN E ++ +I  YE++L
Sbjct: 191 RNGSDLGINRRIMELETELREVKEKLWMQEEEHVDGSSRGSRSENTEDVYTKINAYEQEL 250

Query: 244 RLANEKIHISNEEILRLKIELQKYNSSETNNYLQADFGSPA---EIN-----VNMWDAEL 295
              NEK+ +S EEI +LKIEL+KY    T N L+A F S +    IN     +     EL
Sbjct: 251 MTVNEKLRLSEEEITKLKIELEKYRLFNTEN-LEAGFESSSMKEHINEGGEALEHKTIEL 309

Query: 296 QEGINGLETPSLDLDNKVKALMEELRITKEKLMLSEAEIASLKQEVESNR-SEKIQTLQN 354
           +  I+G++    D + +++ L+ ELRITKE L  SE +I SLK   E+N+ SE+IQ L +
Sbjct: 310 EGSIDGVDKELFDQNGEIETLVRELRITKENLKASEMQITSLK--FEANKSSERIQQLHD 367

Query: 355 QLQLAQKDIATWKSKLNSERKEVSKLQERIKSLKTSLSDRDHEVRDLKMAVSDAEQKIFP 414
           QL+LA+KDI+TWK+K NSE++E +KL ER+  L+TSLSDRDHE+RDLK AVSD EQKIFP
Sbjct: 368 QLELARKDISTWKTKFNSEKRESTKLHERLARLRTSLSDRDHEIRDLKTAVSDTEQKIFP 427

Query: 415 EKAQIKAEILGLYEEKACLVEQLREWESRGRSLEDELRIIKTQKTELEERIVGEIEQLKA 474
           EKAQ+K+E+  + +++  L E++REWESRGR  EDE+R I+++K E EE + GEI+ LKA
Sbjct: 428 EKAQLKSEMSKVLDKRTHLEERIREWESRGRCFEDEIRRIQSEKMETEEALKGEIQLLKA 487

Query: 475 SIAERDKHIENLNRSLDSLKAERDRLESDVI-------SRDDRMDQMEKHLQQLHMEHTE 527
            I +R+ +I++LN  LD+LK E+D L  +V        SRD R++ +  HL QLHMEH +
Sbjct: 488 DIEQRESNIKDLNTILDTLKLEKDNLHVEVYSLKEEVNSRDGRIEHLNTHLNQLHMEHVQ 547

Query: 528 LIKGAEDAHRMVGELRLKAKELEEEIEKQRVVILEGAEEKREAIRQLCFSLEHYRSGYIS 587
           LI G ++A + V EL+ KAK+LEEE+E+Q+ VILEG EEKREAIRQLCFSLEHYR GY  
Sbjct: 548 LIAGMDEAQKQVEELKSKAKQLEEEVERQKTVILEGEEEKREAIRQLCFSLEHYRDGYNM 607

Query: 588 LRKAVIGHKGVAVL 601
           LR+ V+GHK V VL
Sbjct: 608 LRQHVMGHKRVPVL 621

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357491507|ref|XP_003616041.1| Viral A-type inclusion protein repeat containing protein expressed [Medicago truncatula] gi|355517376|gb|AES98999.1| Viral A-type inclusion protein repeat containing protein expressed [Medicago truncatula]

 Score =  663 bits (1711), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 353/611 (57%), Positives = 452/611 (73%), Gaps = 29/611 (4%)

Query: 5   KMKRMESRKSHSWWWDSHISPKNSKWLAENLEEMDQSVKRMLKLIEEDGDSFAKKAEMYY 64
           +MKR+ESRKSHSWWWDSHISPKNSKWL ENLEEMD++VKRMLKLIEED DSFAKKAEMYY
Sbjct: 11  QMKRLESRKSHSWWWDSHISPKNSKWLFENLEEMDRNVKRMLKLIEEDADSFAKKAEMYY 70

Query: 65  QKRPELISHVEEFYRMYRSLAERYDHVTGELRKNIPSDLQSQGSGISDISSELPSMCPSP 124
           +KRPEL++ VEEFYR YRSLAERYDHVTGELRKN+ SDLQSQGSG SD  SE PS  PSP
Sbjct: 71  KKRPELVALVEEFYRGYRSLAERYDHVTGELRKNVQSDLQSQGSGFSDTGSEPPSTLPSP 130

Query: 125 DQRPSRRKSGPRAAGFDFFLGSAGSSAEFYPKEG-DESSSISDSESESDSSSVNNYSAFA 183
           +   + RKS  RAAGFDFFLG+ G++++   K+G DESS+++ SE ESD SSVNNYSAF+
Sbjct: 131 N--VTHRKSSNRAAGFDFFLGTGGNASDISQKDGEDESSTMTGSEDESDDSSVNNYSAFS 188

Query: 184 GNGDDQGLQRKVNELETELREAKEKLHSQEERIADESM--KGAKNENPEALFARIVGYEK 241
            NG D G+ R++NELE ELRE KEKL +QE   A+ S+   GA +EN + ++A+I  YE+
Sbjct: 189 RNGTDPGMNRRINELENELREVKEKLWTQEGEHAEVSVSSSGATHENADDVYAKINAYEQ 248

Query: 242 KLRLANEKIHISNEEILRLKIELQKYNSSETNNYLQADFGSPAEI--NVNMWDAELQEGI 299
           +L + NEK+ +S EEI +L+ EL+ Y S ++ N    D G   E+  +V+  D EL E  
Sbjct: 249 ELMIVNEKLRLSEEEITKLRTELENYKSLDSRNM---DVGVELEVEGSVDGVDKELFESS 305

Query: 300 NGLETPSLDLDNKVKALMEELRITKEKLMLSEAEIASLKQEVESNRSEKIQTLQNQLQLA 359
            G             +L EELRITKE L  SE ++ASL  EV  + S++IQ L++QL  A
Sbjct: 306 GG-----------TASLREELRITKENLKASETQVASLNTEVNKS-SDRIQQLKDQLDSA 353

Query: 360 QKDIATWKSKLNSERKEVSKLQERIKSLKTSLSDRDHEVRDLKMAVSDAEQKIFPEKAQI 419
           +KD+ATWK+K NSE++E +KLQER+  LKTSLSDRDHE+RDLK AVSDAEQKIFPEKA +
Sbjct: 354 KKDVATWKTKFNSEKRESTKLQERLARLKTSLSDRDHEIRDLKTAVSDAEQKIFPEKANL 413

Query: 420 KAEILGLYEEKACLVEQLREWESRGRSLEDELRIIKTQKTELEERIVGEIEQLKASIAER 479
           KAE+  L EE+  L E +REWESRGRS E+++R I+++K E+E  +   I+ LKA I +R
Sbjct: 414 KAEMSKLLEEQTHLKELIREWESRGRSFEEQIRNIQSEKIEMEAELKNGIQLLKAEIEQR 473

Query: 480 DKHIENLNRSLDSLKAERDR-------LESDVISRDDRMDQMEKHLQQLHMEHTELIKGA 532
           + +I++LN SLD+LK E+D        L+ DV SRD R+  +++HL  LH+EH +LI   
Sbjct: 474 ENNIKDLNVSLDNLKLEKDNLNVEVGSLKEDVNSRDGRIGSLDRHLNDLHIEHVQLISSL 533

Query: 533 EDAHRMVGELRLKAKELEEEIEKQRVVILEGAEEKREAIRQLCFSLEHYRSGYISLRKAV 592
           E+A R V E++ KAK LEE++E+Q+  ILE AEEKREAIRQLCFSLEHYR+ Y  L++  
Sbjct: 534 EEACRQVEEIKTKAKNLEEQVERQKTEILEAAEEKREAIRQLCFSLEHYRNNYHMLKQHF 593

Query: 593 IGHKGVAVLTS 603
           IGHK V +L +
Sbjct: 594 IGHKRVPILAA 604

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225434325|ref|XP_002276254.1| PREDICTED: uncharacterized protein LOC100248527 [Vitis vinifera]

 Score =  585 bits (1508), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 355/630 (56%), Positives = 434/630 (68%), Gaps = 56/630 (8%)

Query: 6   MKRMESRKSHSWWWDSHISPKNSKWLAENLEEMDQSVKRMLKLIEEDGDSFAKKAEMYYQ 65
           +KR ES+KSHSWWWDSHISPKNSKWLA+NLEEMDQSVKRMLKLIEEDGDSFAKKAEMYYQ
Sbjct: 12  LKRTESKKSHSWWWDSHISPKNSKWLADNLEEMDQSVKRMLKLIEEDGDSFAKKAEMYYQ 71

Query: 66  KRPELISHVEEFYRMYRSLAERYDHVTGELRKNIPSDLQSQGSGISDISSELPSMCPSPD 125
           KRPELISHVE+FYR+YRSLAERYDHVTGELRKNI SDLQSQGSGISD+ SE  S CPSPD
Sbjct: 72  KRPELISHVEDFYRIYRSLAERYDHVTGELRKNILSDLQSQGSGISDLGSEPASTCPSPD 131

Query: 126 QRPSRRKSGPRAAGFDFFLGSAGSSAEFYPKEGDESSSISDSESESDSSSVNNYSAFAGN 185
           QR  RRKSG RAAGFDFFLGS GSS++ Y K  DESSS+SDSES SD SSVNNY    G 
Sbjct: 132 QRERRRKSGRRAAGFDFFLGSGGSSSDLYNKG-DESSSLSDSESGSDDSSVNNYLGVPG- 189

Query: 186 GDDQGLQRKVNELETELREAKEKLHSQEERIADESMKGAKNENPEALFARIVGYEKKLRL 245
                                 K   Q+E  AD S++G  N N E L  +I GYE++LR 
Sbjct: 190 ----------------------KQQMQQEENADRSLRGTGNGNCEDLLGKIAGYEEELRA 227

Query: 246 ANEKIHISNEEILRLKIELQKYNSSETNNYLQADFGSPAEINVNMWDAEL---------- 295
           A EKI +S EEI+RLK ELQKY      N  QA+       ++ M ++EL          
Sbjct: 228 AKEKIQLSEEEIVRLKTELQKYGPLNFTNNFQAELVELPPRDIKMQESELEFAKKQASEF 287

Query: 296 QEGINGLETPSLDLDNKVKALMEELRITKEKLMLSEAEIASLKQEVES-NRSEKIQTLQN 354
           +EG  GLE    D   K+++L+EELRITKE+L  SE EIA+L  E+ S   SE I  +Q 
Sbjct: 288 EEGAVGLEVDCSDPGLKIQSLVEELRITKERLQGSEKEIATLIDELASRGSSESISHMQE 347

Query: 355 QLQLAQKDIATWKSKLNSERKEVSKLQERIKSLKTSLSDRDHEVRDLKMAVSDAEQKIFP 414
           QL+L  KDIA WK+KL+ E++EVSKLQER+   KTSLSDR+HE+R+LK  +SDA+     
Sbjct: 348 QLELTHKDIAMWKAKLDREKREVSKLQERVGRYKTSLSDREHEIRELKEVISDADHNFEL 407

Query: 415 EKAQIKAEILGLYEEKACLVEQLREWESRGRSLEDELRIIKTQKTELEERI-------VG 467
           EK+ + A+I  L ++++ L E+L+EWE R +SLE+E++ +  +K E + R+         
Sbjct: 408 EKSLLMAKISKLLDDQSHLEEKLKEWELRCQSLEEEIKQVDAEKRETKARLEEQEKLWKT 467

Query: 468 EIEQLKASIAERDKHIENLNRSLDSLK-------AERDRLE-------SDVISRDDRMDQ 513
           EIEQLKA  AE    I +LN+SLD+L        +ERD L        S++ SRDD+  Q
Sbjct: 468 EIEQLKADTAESGDRINDLNKSLDALNLKHDTLMSERDELSARVHALISELSSRDDQKIQ 527

Query: 514 MEKHLQQLHMEHTELIKGAEDAHRMVGELRLKAKELEEEIEKQRVVILEGAEEKREAIRQ 573
           M+K+L QL +E  EL+ GA DA R+V ELR KAK+LEEE+E+Q+ ++ E AEEKREAIRQ
Sbjct: 528 MDKYLHQLRIEQAELVAGAGDARRLVEELRSKAKQLEEEVERQKGLVSEAAEEKREAIRQ 587

Query: 574 LCFSLEHYRSGYISLRKAVIGHKGVAVLTS 603
           LCFSLEHYR+ Y  LR+A   HK  AVLTS
Sbjct: 588 LCFSLEHYRNDYNRLRQAFTVHKRPAVLTS 617

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356569434|ref|XP_003552906.1| PREDICTED: uncharacterized protein LOC100787006 [Glycine max]

 Score =  444 bits (1143), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 281/572 (49%), Positives = 380/572 (66%), Gaps = 47/572 (8%)

Query: 38  MDQSVKRMLKLIEEDGDSFAKKAEMYYQKRPELISHVEEFYRMYRSLAERYDHVTGELRK 97
           M+++V++M KL+EEDGDSFA+KAEMYY+KRPELIS VEEFYR Y+S+AER+DH+      
Sbjct: 1   MERNVRQMQKLMEEDGDSFAQKAEMYYKKRPELISLVEEFYRAYKSMAERFDHI------ 54

Query: 98  NIPSDLQSQGSGISDISSELPSMCPSPDQRP-SRRKSGPRAAGFDFFLGSAGSSAEF--Y 154
           N P DLQSQ SG+SD  SE  S  PSP  R   RR S  RAAGFD FLGS G+   F   
Sbjct: 55  NTPCDLQSQASGVSDYGSEPNSYVPSPSPRKMGRRISTNRAAGFDVFLGSGGNVNTFDAC 114

Query: 155 PKEGDESSSISDS-ESESDSSSVNNYSAFAGNGDDQG-LQRKVNELETELREAKEKLHSQ 212
            K+GD SS+++++ E   D+SS+N++S F GNG+D   + R+V EL+ E+   + K   +
Sbjct: 115 QKDGDGSSTLTETDEDYDDASSMNSFSGFFGNGNDHNSIHRRVMELDIEI-PHEGKEKHE 173

Query: 213 EERIADESMKGAKNENPEALFARIVGYEKKLRLANEKIHISNEEILRLKIELQKYNSSET 272
           EER+ ++ +K     N E    +I  YE++LR+ NEK+ +S EEI +LKIEL+KY S E+
Sbjct: 174 EERVKNDELK--IENNAEDFRVKINAYEQELRIVNEKLRVSEEEIGKLKIELEKYRSMES 231

Query: 273 NNYLQADFGSPAEINVNMWDAELQEGIN-GLETPSLDLDNKVKALMEELRITKEKLMLSE 331
            N L+   G  +          + EGI  G ET  L      K L EELR+TKEKL  SE
Sbjct: 232 KN-LKGGVGLSS----------IVEGIKVGGETLEL------KKLREELRVTKEKLESSE 274

Query: 332 AEIASLKQEVESNRSEKIQTLQNQLQLAQKDIATWKSKLNSERKEVSKLQERIKSLKTSL 391
            +I SLK    +   E IQ LQ QL LAQKDIA+WK+K NS+++E SKLQER   +KT++
Sbjct: 275 MQIVSLKFGA-TKTFETIQQLQEQLDLAQKDIASWKTKFNSQKRENSKLQERHARMKTNV 333

Query: 392 SDRDHEVRDLKMAVSDAEQKIFPEKAQIKAEILGLYEEKACLVEQLREWESRGRSLEDEL 451
           +DRDHEVRDLK A+SD E+KIF E+A +K+E+  L  E+  L E+ +EWE + +SLE+E+
Sbjct: 334 ADRDHEVRDLKAALSDVERKIFFERANMKSEMSKLLGEQTHLEEKFKEWECQCQSLEEEI 393

Query: 452 RIIKTQKTELEERIVGEIEQLKASIAERDKHIENLNRSLDSLKAERDRLESDVISRDDRM 511
           R I  +K E+ E + GEIE LK  I  + K+IE++N +LD +K +RD L+ +V S  + +
Sbjct: 394 RKIYFEKIEMGETLKGEIELLKEEIESKKKNIEDVNVNLDVMKLDRDNLKEEVGSLKEVI 453

Query: 512 DQMEKHLQQLHMEHTELIKGAEDAHRMVGELRLKAKELEEEIEKQRVVILEGAEEKREAI 571
           +  +  +              E+AH+ V EL  +AK+ EEEIE+QRV ILEGAEEKREAI
Sbjct: 454 NSRDDEI--------------EEAHKQVEELTSRAKKQEEEIERQRVEILEGAEEKREAI 499

Query: 572 RQLCFSLEHYRSGYISLRKAVIGHKGVAVLTS 603
           RQLCFSLEHYR+GY  LR+A IG+K V +L +
Sbjct: 500 RQLCFSLEHYRNGYNVLRQAFIGNKRVPLLCT 531

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|343171972|gb|AEL98690.1| kinase interacting (KIP1-like) family protein, partial [Silene latifolia]

 Score =  424 bits (1089), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 276/594 (46%), Positives = 380/594 (63%), Gaps = 45/594 (7%)

Query: 3   HSK--MKRMESRKSHSWWWDSHISPKNSKWLAENLEEMDQSVKRMLKLIEEDGDSFAKKA 60
           H+K  +K ++SRKS+SWWWDSHI P+N KWL+ENL++MDQ+ KRML LIE DGDSFAKKA
Sbjct: 2   HTKKSLKGLDSRKSNSWWWDSHIGPRNIKWLSENLDDMDQNYKRMLTLIEGDGDSFAKKA 61

Query: 61  EMYYQKRPELISHVEEFYRMYRSLAERYDHVTGELRKNIPSDLQSQGSGISDISSELPSM 120
           EMYYQ+RPEL+SHVEEFYR Y+ LAERY+H+TG++RK++  +L SQGS   D+ SE  ++
Sbjct: 62  EMYYQRRPELLSHVEEFYRTYKLLAERYEHLTGDMRKHLLPELHSQGSSGFDLGSETAAV 121

Query: 121 CPSP-DQRPSRRKSGPRAAGFDFFLGSAGSSAEFYPKEGDESSSISDSESESDSSSVNNY 179
             +P D +  RR  G RAAGFDFFLG  G S       GDE+SSISDSE+ESD SS++ Y
Sbjct: 122 AWTPQDPKIGRRGFGHRAAGFDFFLG-YGRSGPDRSARGDETSSISDSETESDISSLHGY 180

Query: 180 SAFAGNGDDQGLQRKVNELETELREAKEKLHSQ-EERIADESMKGAKNENPEALFARIVG 238
                N  ++G Q ++ E E E    +EK  +Q +E     S + + +EN + + +RI G
Sbjct: 181 PGMTVNAGEEGTQTRLTEPEIE-SCGEEKFQNQGQEYNKIGSFRRSSSENFDDVHSRIAG 239

Query: 239 YEKKLRLANEKIHISNEEILRLKIELQKYNSSETNNYLQADFGSPAEINVNMWDAELQEG 298
           YE++L++A EKI    EEI  LK ELQK  S E    L  +F  PA  N +  DAE ++ 
Sbjct: 240 YEEELKMAKEKIFELEEEIANLKTELQKCKSLEHLGNLPLEF--PALRNSSSLDAENEDA 297

Query: 299 INGLETPSLDLD-----NKVKALMEELRITKEKLMLSEAEIASLKQEVESNRSEKIQTLQ 353
           ++   + +LDLD     +K++AL++ELR T+ +  + E E+  L++E     +E I+ +Q
Sbjct: 298 LDE-SSNTLDLDVSGPEDKIQALVKELRNTRGRFQVVEKELMKLRKE-NGESTESIRKMQ 355

Query: 354 NQLQLAQKDIATWKSKLNSERKEVSKLQERIKSLKTSLSDRDHEVRDLKMAVSDAEQKIF 413
           + L++AQKD ATWK  L +E++  SKLQERI   KTSLSDR+ EVR+LK  +SDA +K  
Sbjct: 356 DLLKMAQKDSATWKRMLETEKRLASKLQERIARYKTSLSDREKEVRELKEELSDANRKY- 414

Query: 414 PEKAQIKAEILGLYEEKACLVEQLREWESRGRSLEDELRIIKTQKTELEERIVGEIEQLK 473
               Q+ AEI  L +EK  L E+LREWE   RSLE       TQ   LE ++  EIEQLK
Sbjct: 415 ----QLHAEISRLSDEKIGLEERLREWEVHCRSLE-------TQHGMLETKLNDEIEQLK 463

Query: 474 ASIAERDKHIENLNRSLD-------SLKAERDRLESDVISRDDRMDQMEKHLQQLHMEHT 526
           A IA++   +E+L    D       SL  E++ +ES V  ++D         Q + M+HT
Sbjct: 464 ADIADKTARLESLESDFDGYKLKYASLLTEKEEVESKVREKED---------QIIQMQHT 514

Query: 527 ELIKGAEDAHRMVGELRLKAKELEEEIEKQRVVILEGAEEKREAIRQLCFSLEH 580
             I   E   +   E+ ++ +EL EE+E Q+ +I+E AE KREAIRQLC+SLEH
Sbjct: 515 --IAENEVFRKKAEEVSMRVEELREEVEGQKDLIMEAAEGKREAIRQLCYSLEH 566

Source: Silene latifolia

Species: Silene latifolia

Genus: Silene

Family: Caryophyllaceae

Order: Caryophyllales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|8777333|dbj|BAA96923.1| unnamed protein product [Arabidopsis thaliana]

 Score =  422 bits (1085), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 278/596 (46%), Positives = 376/596 (63%), Gaps = 66/596 (11%)

Query: 6   MKRMESRKSHSWWWDSHISPKNSKWLAENLEEMDQSVKRMLKLIEEDGDSFAKKAEMYYQ 65
           +KR+ES KS+ WWWDSHI  KNSKWL  NL+EMD+SVKRM+KLIEED DSFAKKAEMYYQ
Sbjct: 43  IKRVESTKSNPWWWDSHIGLKNSKWLENNLDEMDRSVKRMVKLIEEDADSFAKKAEMYYQ 102

Query: 66  KRPELISHVEEFYRMYRSLAERYDHVTGELRKNIPSDLQSQGSGISDIS-SELPSMCPSP 124
            RPELI+ V+EF+RMYR+LAERY+++TGELRK  P +LQSQGSG+SDIS S+L ++  S 
Sbjct: 103 SRPELIALVDEFHRMYRALAERYENITGELRKGSPLELQSQGSGLSDISASDLSALWTSN 162

Query: 125 D-QRPSRRKSGPRAAGFDFFLGSAGSSAEFYPKEGDESSSISDSESESDSSSVNNYSAFA 183
           +  R  R  SG RA GF++FLG+ G  ++ Y K+GD+S+SI+DSE ESD SSV NY  + 
Sbjct: 163 EVNRLGRPPSGRRAPGFEYFLGNGGLPSDLYHKDGDDSASITDSELESDDSSVTNYPGYV 222

Query: 184 GNGDD-QGLQRKVNELETELREAKEKLHSQEERIADESMKGAKNENPEALF-ARIVGYEK 241
             G D Q L +++ +LE ELREAKE+L  Q E   +  +   K+E     F A++   E+
Sbjct: 223 SIGSDFQSLSKRIMDLEIELREAKERLRMQLEGNTESLLPRVKSETKFVDFPAKLAACEQ 282

Query: 242 KLRLANEKIHISNEEILRLKIELQKYNSSETNNYLQADFGSPAEINVNMWDAELQEGING 301
           +L+  NEK+  S ++I  LK +L +Y  S                     D E  EG   
Sbjct: 283 ELKDVNEKLQNSEDQIYILKSQLARYLPSGL-------------------DDEQSEG--A 321

Query: 302 LETPSLDLDNKVKALMEELRITKEKLMLSEAEIASLKQEVESNRSE--KIQTLQNQLQLA 359
             T  LD    ++ L EELRIT  +L  +E +   +++EVE ++S+  K+++LQ+ L+ A
Sbjct: 322 ASTQELD----IETLSEELRITSLRLREAEKQNGIMRKEVEKSKSDDAKLKSLQDMLESA 377

Query: 360 QKDIATWKSKLNSERKEVSKLQERIKSLKTSLSDRDHEVRDLKMAVSDAEQKIFPEKAQI 419
           QK+ A WKSK +++++EV KL +RI  LK+SL+ RDHE+RDLK A+SDAE+KIFPEKAQ+
Sbjct: 378 QKEAAAWKSKASADKREVVKLLDRISMLKSSLAGRDHEIRDLKTALSDAEEKIFPEKAQV 437

Query: 420 KAEILGLYEEKACLVEQLREWESRGRSLEDELRIIKTQKTELEERIVGEIEQLKASIAER 479
           KA+I  L EEK    +Q +E E+  R LEDE R +  +K E EE++  EIE L     E+
Sbjct: 438 KADIAKLLEEKIHRDDQFKELEANVRYLEDERRKVNNEKIEEEEKLKSEIEVLTLEKVEK 497

Query: 480 DKHIENLNRSLDSLKAERDRLESDVISRDDRMDQMEKHLQQLHMEHTELIKGAEDAHRMV 539
            + IE L+R +  L++E  RL S++ +RDDR  +MEK                       
Sbjct: 498 GRCIETLSRKVSELESEISRLGSEIKARDDRTMEMEK----------------------- 534

Query: 540 GELRLKAKELEEEIEKQRVVILEGAEEKREAIRQLCFSLEHYRSGYISLRKAVIGH 595
                       E+EKQR  + E AEEKRE IRQLCFSL++ R  Y  LR A  GH
Sbjct: 535 ------------EVEKQRRELEEVAEEKREVIRQLCFSLDYSRDEYKRLRIAFSGH 578

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	604
TAIR|locus:2161268	558	NET4A "Networked 4A" [Arabidop	0.831	0.899	0.328	3.5e-68
TAIR|locus:2064387	517	NET4B "AT2G30500" [Arabidopsis	0.778	0.909	0.327	2.5e-49
TAIR|locus:2007569	1733	NET1D "AT1G03080" [Arabidopsis	0.139	0.048	0.738	3.4e-41
TAIR|locus:2130210	1710	NET1B "Networked 1B" [Arabidop	0.153	0.054	0.617	2.5e-36
TAIR|locus:2132348	1111	NET1C "AT4G02710" [Arabidopsis	0.149	0.081	0.633	1.1e-35
TAIR|locus:2024271	928	NET2B "AT1G09720" [Arabidopsis	0.150	0.098	0.571	3.8e-30
TAIR|locus:2142554	848	NET2C "AT5G10500" [Arabidopsis	0.150	0.107	0.571	4.3e-29
TAIR|locus:2041203	947	NET2D "AT2G22560" [Arabidopsis	0.794	0.506	0.258	7.2e-29
TAIR|locus:2043363	225	NET3C "AT2G47920" [Arabidopsis	0.135	0.364	0.560	4.3e-26
TAIR|locus:2020843	269	NET3A "AT1G03470" [Arabidopsis	0.125	0.282	0.597	2.7e-24

TAIR|locus:2161268 NET4A "Networked 4A" [Arabidopsis thaliana (taxid:3702)]

 Score = 692 (248.7 bits), Expect = 3.5e-68, P = 3.5e-68
 Identities = 176/536 (32%), Positives = 283/536 (52%)

Query:     6 MKRMESRKSHSWWWDSHISPKNSKWLAENLEEMDQSVKRMLKLIEEDGDSFAKKAEMYYQ 65
             +KR+ES KS+ WWWDSHI  KNSKWL  NL+EMD+SVKRM+KLIEED DSFAKKAEMYYQ
Sbjct:    12 IKRVESTKSNPWWWDSHIGLKNSKWLENNLDEMDRSVKRMVKLIEEDADSFAKKAEMYYQ 71

Query:    66 KRPELISHVEEFYRMYRSLAERYDHVTGELRKNIPSDLXXXXXXXXX-XXXELPSMCPSP 124
              RPELI+ V+EF+RMYR+LAERY+++TGELRK  P +L             +L ++  S 
Sbjct:    72 SRPELIALVDEFHRMYRALAERYENITGELRKGSPLELQSQGSGLSDISASDLSALWTSN 131

Query:   125 D-QRPSRRKSGPRAAGFDFFLGSAGSSAEFYPKEGXXXXXXXXXXXXXXXXXVNNYSAFA 183
             +  R  R  SG RA GF++FLG+ G  ++ Y K+G                 V NY  + 
Sbjct:   132 EVNRLGRPPSGRRAPGFEYFLGNGGLPSDLYHKDGDDSASITDSELESDDSSVTNYPGYV 191

Query:   184 GNGDD-QGLQRKVNELETELREAKEKLHSQEERIADESMKGAKNENPEALF-ARIVGYEK 241
               G D Q L +++ +LE ELREAKE+L  Q E   +  +   K+E     F A++   E+
Sbjct:   192 SIGSDFQSLSKRIMDLEIELREAKERLRMQLEGNTESLLPRVKSETKFVDFPAKLAACEQ 251

Query:   242 KLRLANEKIHISNEEILRLKIELQKYNSSETNNYLQADFGSPAEINVNMWDAELQEGING 301
             +L+  NEK+  S ++I  LK +L +Y  S  ++       S  E+++     EL+  I  
Sbjct:   252 ELKDVNEKLQNSEDQIYILKSQLARYLPSGLDDEQSEGAASTQELDIETLSEELR--ITS 309

Query:   302 LETPSLDLDNKVKALMEELRITKEKLMLSEAEIASLKQEVESNRSEKIQTLQNQLQLAQK 361
             L     +  N +      +R   EK    +A++ SL+  +ES + E     +++    ++
Sbjct:   310 LRLREAEKQNGI------MRKEVEKSKSDDAKLKSLQDMLESAQKEAA-AWKSKASADKR 362

Query:   362 DIATWKSKLNSERKEVSKLQERIKSLKTSLSDRDHEVRDLKMAVSDAEQKIFPEKA---- 417
             ++     +++  +  ++     I+ LKT+LSD + ++   K  V     K+  EK     
Sbjct:   363 EVVKLLDRISMLKSSLAGRDHEIRDLKTALSDAEEKIFPEKAQVKADIAKLLEEKIHRDD 422

Query:   418 ---QIKAEILGLYEEKACLVEQLREWESRGRSLEDELRIIKTQKTELEERIVGEIEQLKA 474
                +++A +  L +E+  +  +  E E +   L+ E+ ++  +K E + R    IE L  
Sbjct:   423 QFKELEANVRYLEDERRKVNNEKIEEEEK---LKSEIEVLTLEKVE-KGRC---IETLSR 475

Query:   475 SIAERDKHIENLNRSLDSLKAERDRLESDVISRDDRMDQMEKHLQQLHMEHTELIK 530
              ++E +  I  L      +KA  DR     +  +  +++  + L+++  E  E+I+
Sbjct:   476 KVSELESEISRLG---SEIKARDDR----TMEMEKEVEKQRRELEEVAEEKREVIR 524

GO:0005576 "extracellular region" evidence=ISM

GO:0005634 "nucleus" evidence=ISM

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005774 "vacuolar membrane" evidence=IDA

TAIR|locus:2064387 NET4B "AT2G30500" [Arabidopsis thaliana (taxid:3702)]

 Score = 514 (186.0 bits), Expect = 2.5e-49, P = 2.5e-49
 Identities = 169/516 (32%), Positives = 253/516 (49%)

Query:     5 KMKRMESRKSHSWWWDSHISPKNSKWLAENLEEMDQSVKRMLKLIEEDGDSFAKKAEMYY 64
             + KR  ++KSHSWWWDSH  PKNSKWLAENLE+MD  V  MLKLIEED DSFAKKA+MY+
Sbjct:    11 QFKRSMTKKSHSWWWDSHNCPKNSKWLAENLEKMDDRVNHMLKLIEEDADSFAKKAQMYF 70

Query:    65 QKRPELISHVEEFYRMYRSLAERYDHVTGELRKNIPSDLXXXXXXXXXXXXELPSMCPSP 124
             QKRPELI  VEEFYRMYR+LAERYD  +GEL+KN  S++            E+ S  P+ 
Sbjct:    71 QKRPELIQLVEEFYRMYRALAERYDQASGELQKNHTSEIQSQSSL------EISS--PTK 122

Query:   125 DQRPSRRKSGPRAAGFDFFLGSAGSSAEFYP---KEGXXXXXXXXXXXXXXXXXVNNYSA 181
             ++  SRR+S  +       L  +GS ++      ++G                       
Sbjct:   123 EKL-SRRQSSHKEEEDSSSLTDSGSDSDHSSANDEDGDEALIRRMAELELELQETKQKLL 181

Query:   182 F---AGNGDDQ-GLQRKVNELETELREAKEKLHSQEERIAD-----ESMKGAKNENPEAL 232
                 + +GD+   L  K+   E EL+EA EK+   E+ IA+     +S      E+    
Sbjct:   182 LQQESVDGDNNVDLLHKITTYEGELKEANEKMRMHEDEIANLKNQLQSFMSFDTEDHLGA 241

Query:   233 FARIVGYEK---KLRLANEKIHISNEEILRLKIELQKYNSSETNNYLQADFGSPAEINVN 289
               + V  +K   K      K+    EE+   K +LQ +     +   + + G  AE  + 
Sbjct:   242 EQKSVDLDKEDTKEDAVATKVLALEEELSIAKEKLQHFEKETYSLKNELEIGKAAEEKLK 301

Query:   290 MWDAELQEGINGLETPSLDLDNKVKALMEELRITKEKLMLSEAEIASLKQEVESNRSEKI 349
                  LQ   + LE    D D  +  L  E    KE L L E  +A +K  ++ +R  +I
Sbjct:   302 ----SLQ---HELELAQRDADTYINKLNAE---KKEVLKLQE-RLAMVKTSLQ-DRDNEI 349

Query:   350 QTLQNQLQLAQKDIATWKSKLNSERKEVSKLQERIKSLKTSLSDRDHEVRDLKMAVSDAE 409
             + L+  +  A++ I   K+++  E   +SK+ E    L   L + +  +R +K   ++ E
Sbjct:   350 RALKTAVSDAEQKIFPEKAQIKGE---MSKMLEERSQLGEQLRELESHIRLIKEEKAETE 406

Query:   410 QKIF--PEKAQ-IKAEILGLYEEKACLVEQLREWESRGRSLEDELRIIKTQKTELEERIV 466
             +K+    EK   ++ E   L EE     E+++E E     L  E   ++ + +EL E + 
Sbjct:   407 EKLRGGTEKISGMRDESNVLREEIGKREEKIKETEKHMEELHMEQVRLRRRSSELTEEV- 465

Query:   467 GEIEQLKAS-IAERDKH-IENLNRSLDSLKAERDRL 500
              E  ++ AS +AE+ +  I  L  SLD  +   DRL
Sbjct:   466 -ERTRVSASEMAEQKREAIRQLCMSLDHYRDGYDRL 500

GO:0046685 "response to arsenic-containing substance" evidence=RCA

TAIR|locus:2007569 NET1D "AT1G03080" [Arabidopsis thaliana (taxid:3702)]

 Score = 356 (130.4 bits), Expect = 3.4e-41, Sum P(2) = 3.4e-41
 Identities = 62/84 (73%), Positives = 73/84 (86%)

Query:    13 KSHSWWWDSHISPKNSKWLAENLEEMDQSVKRMLKLIEEDGDSFAKKAEMYYQKRPELIS 72
             K +SWWWDSHISPKNSKWL ENL +MD  VK+M+K+IEED DSFA++AEMYY+KRPEL+ 
Sbjct:    10 KRYSWWWDSHISPKNSKWLQENLTDMDSKVKQMIKVIEEDADSFARRAEMYYKKRPELMK 69

Query:    73 HVEEFYRMYRSLAERYDHVTGELR 96
              VEEFYR YR+LAERYDH TG +R
Sbjct:    70 LVEEFYRAYRALAERYDHATGVIR 93

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0005886 "plasma membrane" evidence=IDA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

TAIR|locus:2130210 NET1B "Networked 1B" [Arabidopsis thaliana (taxid:3702)]

 Score = 328 (120.5 bits), Expect = 2.5e-36, Sum P(2) = 2.5e-36
 Identities = 58/94 (61%), Positives = 75/94 (79%)

Query:     4 SKMKRMESRKSHSWWWDSHISPKNSKWLAENLEEMDQSVKRMLKLIEEDGDSFAKKAEMY 63
             + + + ES + +SWWWDSHI PKNSKW+ +NL +MD  VK M+KLIE D DSFA++A+MY
Sbjct:     2 ASLSQSESGRLYSWWWDSHI-PKNSKWIQDNLADMDSKVKTMIKLIEADADSFARRADMY 60

Query:    64 YQKRPELISHVEEFYRMYRSLAERYDHVTGELRK 97
             ++KRPEL+  VEE YR YR+LAERYDH T ELR+
Sbjct:    61 FKKRPELMKLVEELYRAYRALAERYDHTTVELRR 94

GO:0005634 "nucleus" evidence=IDA

TAIR|locus:2132348 NET1C "AT4G02710" [Arabidopsis thaliana (taxid:3702)]

 Score = 341 (125.1 bits), Expect = 1.1e-35, Sum P(2) = 1.1e-35
 Identities = 57/90 (63%), Positives = 76/90 (84%)

Query:     8 RMESRKSHSWWWDSHISPKNSKWLAENLEEMDQSVKRMLKLIEEDGDSFAKKAEMYYQKR 67
             +  S++ +SWWWDSH +PKNSKWL +NL +MD +VK+M+K++EED DSFA++AEMYY+KR
Sbjct:     6 KSNSKRMYSWWWDSHNTPKNSKWLQDNLADMDSNVKQMIKVLEEDADSFARRAEMYYRKR 65

Query:    68 PELISHVEEFYRMYRSLAERYDHVTGELRK 97
             PEL+  VEEFYR YR+LAERY+H TG + K
Sbjct:    66 PELMKLVEEFYRAYRALAERYNHATGVIHK 95

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005886 "plasma membrane" evidence=IDA

GO:0010413 "glucuronoxylan metabolic process" evidence=RCA

GO:0045492 "xylan biosynthetic process" evidence=RCA

TAIR|locus:2024271 NET2B "AT1G09720" [Arabidopsis thaliana (taxid:3702)]

 Score = 302 (111.4 bits), Expect = 3.8e-30, Sum P(2) = 3.8e-30
 Identities = 52/91 (57%), Positives = 72/91 (79%)

Query:     6 MKRMESRKSHSWWWDSHISPKNSKWLAENLEEMDQSVKRMLKLIEEDGDSFAKKAEMYYQ 65
             M +  +  ++SWWW SHI  K SKWL  NL++M++ VK  LK+I+ DGDSFAK+AEMYY+
Sbjct:     1 MLQRAASNAYSWWWASHIRTKQSKWLEHNLQDMEEKVKYTLKIIDGDGDSFAKRAEMYYR 60

Query:    66 KRPELISHVEEFYRMYRSLAERYDHVTGELR 96
             KRPE+++ VEE +R YR+LAERYDH++ EL+
Sbjct:    61 KRPEIVNFVEEAFRSYRALAERYDHLSTELQ 91

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2142554 NET2C "AT5G10500" [Arabidopsis thaliana (taxid:3702)]

 Score = 307 (113.1 bits), Expect = 4.3e-29, Sum P(2) = 4.3e-29
 Identities = 52/91 (57%), Positives = 74/91 (81%)

Query:     6 MKRMESRKSHSWWWDSHISPKNSKWLAENLEEMDQSVKRMLKLIEEDGDSFAKKAEMYYQ 65
             M R  +  ++SWWW SH+  K SKWL ENL+++++ V+  LKL+E++GDSFAK+AEMYY+
Sbjct:     1 MLRRAASNAYSWWWASHVRTKQSKWLEENLQDIEEKVEYALKLLEDEGDSFAKRAEMYYK 60

Query:    66 KRPELISHVEEFYRMYRSLAERYDHVTGELR 96
             +RPELIS VEE ++ YR+LAERYDH++ EL+
Sbjct:    61 RRPELISFVEESFKAYRALAERYDHISKELQ 91

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

TAIR|locus:2041203 NET2D "AT2G22560" [Arabidopsis thaliana (taxid:3702)]

 Score = 350 (128.3 bits), Expect = 7.2e-29, P = 7.2e-29
 Identities = 137/530 (25%), Positives = 236/530 (44%)

Query:     6 MKRMESRKSHSWWWDSHISPKNSKWLAENLEEMDQSVKRMLKLIEEDGDSFAKKAEMYYQ 65
             M +  +  ++SWWW SHI  K SKWL +NL+++++ V+ +LKL++EDGDSFAK+AEMYY+
Sbjct:     1 MLQRAASNAYSWWWASHIRTKQSKWLEQNLQDIEEKVQYVLKLLQEDGDSFAKRAEMYYK 60

Query:    66 KRPELISHVEEFYRMYRSLAERYDHVTGELRK-----------NIPS-------DLXXXX 107
             KRPELIS VEE YR YR+LAERYDH++ EL+             +P+       D+    
Sbjct:    61 KRPELISFVEESYRAYRALAERYDHISTELQNANTTIASVFPDQVPNFAMDDDIDMSKFA 120

Query:   108 XXXXXXXXELPSM--CPSPDQRPSRRKSGPRAAGFDFFLGSAGSSAEFYPKEGXXX--XX 163
                      +P++   P  D + + R +  +         + GS+       G       
Sbjct:   121 KRSNISGANVPNVPKLPVKDLKSAVRVATKKLQPRKSMKYTGGSTNVVVKSSGLSKPEAM 180

Query:   164 XXXXXXXXXXXXVNNYSAFAGNGDDQGLQRKVNELETELREAKEKLHSQEERIADESMKG 223
                         +     F  +  + GL  K  E E  ++E +E++   ++    ES+  
Sbjct:   181 GEIDKLQKEILALQTEKEFVKSSYEIGLS-KYWEFEKGIKEKQERICGLQDEFG-ESV-A 237

Query:   224 AKNENPEALFAR--IVGYEKKLRLANEKIHISNEEILRLKIELQKYNSSETNNYLQADFG 281
              ++E    L     I   ++KL    EK   S EE     +++++  S E    + + F 
Sbjct:   238 IEDEEARRLMTETAIKSCQEKLVELQEKQEKSYEEAREEHVKIKE--SKEKLRSMASQFL 295

Query:   282 SPAEINVNMWDAELQEGINGLETPSLDLDNK-VKALMEELRITKEKLMLSEAEIASLKQE 340
                 +          +G     T  LD + K +    +EL   KEK+     E  +    
Sbjct:   296 GDESVFAK------DDGDEVRRTAELDHEIKEMSRKKKELESVKEKIR-EHFESGANSSL 348

Query:   341 VESNRSEKIQTLQNQLQLAQKDIATWKSKLNSERKEVSKLQERIKSLKTSLSDRDHEVRD 400
               ++ +EK+  L N++   +  +++  + +   R E + LQ +I +L+T  +    +  D
Sbjct:   349 NGTDMAEKVDELVNKVISLESAVSSQTALIQRLRNETNGLQTQISTLETDKALLADDKSD 408

Query:   401 LKMAVSDAEQKI-----FPEKAQIKAEILGLYEEKACL-VEQLREW---ESRGRSLEDEL 451
             L+  + + E+K+            K+  L  + + AC  ++ L      E +  S  D L
Sbjct:   409 LRNKLKEMEEKLKALQDLDRNVLDKSSNLQTHFDDACHNLDNLSGGNLHEVKPESESDNL 468

Query:   452 RI-IKTQKT-ELEERIVGEIEQLKASIAERDKHIENLNRSLDSLKAERDR 499
              I I+ QK  E E+R +   E++K    E  +  E     + S+K E+ R
Sbjct:   469 AISIEPQKDLEGEKRTLDISEEIKEHQKETGE--EKKEAPVKSVKFEQTR 516

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2043363 NET3C "AT2G47920" [Arabidopsis thaliana (taxid:3702)]

 Score = 254 (94.5 bits), Expect = 4.3e-26, Sum P(2) = 4.3e-26
 Identities = 46/82 (56%), Positives = 61/82 (74%)

Query:    10 ESRKSHSWWWDSHISPKNSKWLAENLEEMDQSVKRMLKLIEEDGDSFAKKAEMYYQKRPE 69
             E  KS  WW++SH S K+S+WL   L E+D   K MLKL++ + DSFA++AE YY+KRPE
Sbjct:     4 EEEKSRWWWFESHKSSKHSQWLQSTLAEIDAKTKAMLKLLDGNADSFAQRAETYYKKRPE 63

Query:    70 LISHVEEFYRMYRSLAERYDHV 91
             LIS VE+FYR +RSLA  +DH+
Sbjct:    64 LISFVEDFYRAHRSLAVNFDHL 85

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2020843 NET3A "AT1G03470" [Arabidopsis thaliana (taxid:3702)]

 Score = 250 (93.1 bits), Expect = 2.7e-24, Sum P(2) = 2.7e-24
 Identities = 46/77 (59%), Positives = 57/77 (74%)

Query:    14 SHSWWW-DSHISPKNSKWLAENLEEMDQSVKRMLKLIEEDGDSFAKKAEMYYQKRPELIS 72
             S  WWW  +H +   S WL   L E+D+  K ML++I+ED DSFA +AEMYY+KRPELI+
Sbjct:     5 SSKWWWIGNHNTTNFSPWLHSTLSELDEKTKEMLRVIDEDADSFAARAEMYYKKRPELIA 64

Query:    73 HVEEFYRMYRSLAERYD 89
              VEEFYR +RSLAERYD
Sbjct:    65 MVEEFYRSHRSLAERYD 81

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0031965 "nuclear membrane" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh4_pg.C_LG_XIX000948 hypothetical protein (613 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	604
pfam07765	74	pfam07765, KIP1, KIP1-like protein	1e-42
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	2e-15
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	4e-15
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	8e-12
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	1e-11
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	1e-11
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	2e-11
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	4e-11
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	8e-11
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	1e-10
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	2e-10
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	4e-10
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	8e-10
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	1e-09
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	3e-09
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	7e-09
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	1e-08
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	2e-08
COG4942	420	COG4942, COG4942, Membrane-bound metallopeptidase	3e-08
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	4e-08
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	2e-07
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	4e-07
PRK02224	880	PRK02224, PRK02224, chromosome segregation protein	4e-07
PRK03918	880	PRK03918, PRK03918, chromosome segregation protein	4e-07
PRK02224	880	PRK02224, PRK02224, chromosome segregation protein	5e-07
COG0419	908	COG0419, SbcC, ATPase involved in DNA repair [DNA	2e-06
PHA02562	562	PHA02562, 46, endonuclease subunit; Provisional	4e-06
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	5e-06
pfam12128	1198	pfam12128, DUF3584, Protein of unknown function (D	5e-06
PRK02224	880	PRK02224, PRK02224, chromosome segregation protein	6e-06
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	1e-05
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	2e-05
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	2e-05
PRK02224	880	PRK02224, PRK02224, chromosome segregation protein	2e-05
PRK03918	880	PRK03918, PRK03918, chromosome segregation protein	2e-05
COG0419	908	COG0419, SbcC, ATPase involved in DNA repair [DNA	4e-05
TIGR00606	1311	TIGR00606, rad50, rad50	6e-05
pfam07888	546	pfam07888, CALCOCO1, Calcium binding and coiled-co	6e-05
COG0419	908	COG0419, SbcC, ATPase involved in DNA repair [DNA	7e-05
COG2433	652	COG2433, COG2433, Uncharacterized conserved protei	1e-04
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	2e-04
pfam13166	713	pfam13166, AAA_13, AAA domain	2e-04
PRK12704	520	PRK12704, PRK12704, phosphodiesterase; Provisional	2e-04
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	3e-04
pfam05667	536	pfam05667, DUF812, Protein of unknown function (DU	3e-04
COG1579	239	COG1579, COG1579, Zn-ribbon protein, possibly nucl	6e-04
PRK01156	895	PRK01156, PRK01156, chromosome segregation protein	0.001
COG5185	622	COG5185, HEC1, Protein involved in chromosome segr	0.002
pfam05557	722	pfam05557, MAD, Mitotic checkpoint protein	0.002
pfam12128	1198	pfam12128, DUF3584, Protein of unknown function (D	0.003
smart00435	391	smart00435, TOPEUc, DNA Topoisomerase I (eukaryota	0.003
pfam04582	326	pfam04582, Reo_sigmaC, Reovirus sigma C capsid pro	0.003
pfam12128	1198	pfam12128, DUF3584, Protein of unknown function (D	0.004
COG1340	294	COG1340, COG1340, Uncharacterized archaeal coiled-	0.004

>gnl|CDD|116379 pfam07765, KIP1, KIP1-like protein

 Score =  146 bits (371), Expect = 1e-42
 Identities = 62/74 (83%), Positives = 67/74 (90%)

Query: 16 SWWWDSHISPKNSKWLAENLEEMDQSVKRMLKLIEEDGDSFAKKAEMYYQKRPELISHVE 75
          SWWWDSHISPKNSKWL ENL+EMD  VK MLKLIEED DSFAK+AEMYY+KRPELI+ VE
Sbjct: 1  SWWWDSHISPKNSKWLEENLQEMDSKVKEMLKLIEEDADSFAKRAEMYYKKRPELIALVE 60

Query: 76 EFYRMYRSLAERYD 89
          EFYR YR+LAERYD
Sbjct: 61 EFYRAYRALAERYD 74

This is a family of sequences found exclusively in plants. They are similar to kinase interacting protein 1 (KIP1), which has been found to interact with the kinase domain of PRK1, a receptor-like kinase. This particular region contains two coiled-coils, which are described as motifs involved in protein-protein interactions. It has also been suggested that the protein's coiled- coils allow it to dimerise in vivo. Length = 74

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 79.8 bits (197), Expect = 2e-15
 Identities = 68/278 (24%), Positives = 144/278 (51%), Gaps = 9/278 (3%)

Query: 293 AELQEGINGLETPSLDLDNKVKALMEELRITKEKLMLSEAEIASLKQEVESNRSEKIQTL 352
           AEL+  +  LE     L N++++L + L   + +L   E ++  LK+E+ +   E  Q L
Sbjct: 677 AELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKRELAALEEELEQ-L 735

Query: 353 QNQLQLAQKDIATWKSKLNSERKEVSKLQERIKSLKTSLSDRDHEVRDLKMAVSDAEQKI 412
           Q++L+  ++++   + +L   ++ + +L+E ++SL+ +L+    E+ +L+    +  Q +
Sbjct: 736 QSRLEELEEELEELEEELEELQERLEELEEELESLEEALAKLKEEIEELE----EKRQAL 791

Query: 413 FPEKAQIKAEILGLYEEKACLVEQLREWESRGRSLEDELRIIKTQKTELEERIVGEIEQL 472
             E  +++ E+         L  +L   E R   LE E+  ++ +  ELEE    ++++L
Sbjct: 792 QEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEIEELEE----KLDEL 847

Query: 473 KASIAERDKHIENLNRSLDSLKAERDRLESDVISRDDRMDQMEKHLQQLHMEHTELIKGA 532
           +  + E +K +E L   L+ L+AE++ LE ++   ++  +++E+ L++L  E  EL +  
Sbjct: 848 EEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELRELESELAELKEEI 907

Query: 533 EDAHRMVGELRLKAKELEEEIEKQRVVILEGAEEKREA 570
           E     + EL  K + LE E+ +    + E  E+  E 
Sbjct: 908 EKLRERLEELEAKLERLEVELPELEEELEEEYEDTLET 945

Length = 1163

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 78.9 bits (195), Expect = 4e-15
 Identities = 60/268 (22%), Positives = 131/268 (48%), Gaps = 15/268 (5%)

Query: 319 ELRITKEKLMLSEAEIASLKQEVESNRSEKIQTLQNQLQLAQKDIATWKSKLNSERKEVS 378
           E+   +EK+   E +IA L++ +   R E ++ L+ +L+  +K++     ++++ RK+++
Sbjct: 678 EIEELEEKIEELEEKIAELEKALAELRKE-LEELEEELEQLRKELEELSRQISALRKDLA 736

Query: 379 KLQERIKSLKTSLSDRDHEVRDL---KMAVSDAEQKIFPEKAQIKAEILGLYEEKACLVE 435
           +L+  ++ L+  ++    E+ +L      + +  ++   E A+ +AEI  L  +   L E
Sbjct: 737 RLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKE 796

Query: 436 QLREWESRGRSLEDELRIIKTQKTELEERIVG----------EIEQLKASIAERDKHIEN 485
           +L+        L  EL ++  +   L ER+             +E L+  I E  + IE+
Sbjct: 797 ELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIES 856

Query: 486 LNRSLDSLKAERDRLESDVISRDDRMDQMEKHLQQLHMEHTELIKGAEDAHRMVGELRLK 545
           L   ++ L+   + LES++ +  +    +E+ L  L  E  EL +   +      ELR +
Sbjct: 857 LAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRE 916

Query: 546 AKELEEEIEKQRVVILEGAEEKREAIRQ 573
            +EL E++ +  +  LEG E + + +++
Sbjct: 917 LEELREKLAQLELR-LEGLEVRIDNLQE 943

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 68.2 bits (167), Expect = 8e-12
 Identities = 60/267 (22%), Positives = 130/267 (48%), Gaps = 5/267 (1%)

Query: 308 DLDNKVKALMEELRITKEKLMLSEAEIASLKQEVESNRSEKIQTLQNQLQLAQKDIATWK 367
           +L+ ++  L EEL   +E+L  +E EI  LK E+E    E+++ LQ +L   +++I   +
Sbjct: 243 ELEEELSRLEEELEELQEELEEAEKEIEELKSELEE-LREELEELQEELLELKEEIEELE 301

Query: 368 SKLNSERKEVSKLQERIKSLKTSLSDRDHEVRDLKMAVSDAEQKIFPEKAQIKAEILGLY 427
            +++  R+ + +L+  ++ L+  L +   ++  LK  + + E  +   +  +        
Sbjct: 302 GEISLLRERLEELENELEELEERLEELKEKIEALKEELEERETLLEELEQLLAELEEAKE 361

Query: 428 EEKACLVEQLREWESRGRSLEDELRIIKTQKTELEERIVGEIEQLKASIAERDKHIENLN 487
           E +  L   L E E    +L +EL  ++ +  E+      E+E+LK  I   ++ +E L+
Sbjct: 362 ELEEKLSALLEELEELFEALREELAELEAELAEIRN----ELEELKREIESLEERLERLS 417

Query: 488 RSLDSLKAERDRLESDVISRDDRMDQMEKHLQQLHMEHTELIKGAEDAHRMVGELRLKAK 547
             L+ LK E   LE+++      ++++ + L++L  +  EL    ++  R + EL+ + +
Sbjct: 418 ERLEDLKEELKELEAELEELQTELEELNEELEELEEQLEELRDRLKELERELAELQEELQ 477

Query: 548 ELEEEIEKQRVVILEGAEEKREAIRQL 574
            LE+E+      +     E+R +    
Sbjct: 478 RLEKELSSLEARLDRLEAEQRASQGVR 504

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 67.8 bits (166), Expect = 1e-11
 Identities = 87/388 (22%), Positives = 174/388 (44%), Gaps = 50/388 (12%)

Query: 189  QGLQRKVNELETELREAKEKLHSQEERIADESMKG-AKNENPEALFARIVGYEKKLRLAN 247
              L+ ++ +LE EL+  K +L S E+ + +   +        E L   +   E++L    
Sbjct: 677  AELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKRELAALEEELEQLQ 736

Query: 248  EKIHISNEEILRLKIELQKYNSSETNNYLQADFGSPAEINVNMWDAELQEGINGLETPSL 307
             ++    EE+  L+ EL++          +                 L+E +  L+    
Sbjct: 737  SRLEELEEELEELEEELEELQERLEELEEEL--------------ESLEEALAKLKEEIE 782

Query: 308  DLDNKVKALMEELRITKEKLMLSEAEIASLKQEVESNRSEKIQTLQNQLQLAQKDIATWK 367
            +L+ K +AL EEL   +E+L  +E  + +L++E+ES    + + L+ +++  +++I   +
Sbjct: 783  ELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRER-LEQEIEELEEEIEELE 841

Query: 368  SKLNSERKEVSKLQERIKSLKTSLSDRDHEVRDLKMAVSDAEQKIFPEKAQIKAEILGLY 427
             KL+   +E+ +L++ ++ LK  L + + E  +L+  + + E+    EK +++ E+  L 
Sbjct: 842  EKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEE----EKEELEEELRELE 897

Query: 428  EEKACLVEQLREWESRGRSLEDELRIIKTQKTELEERIVGEIEQLKASIAERDKHIENLN 487
             E A L E++ +   R   LE +L  ++ +  ELEE +  E E         D     L 
Sbjct: 898  SELAELKEEIEKLRERLEELEAKLERLEVELPELEEELEEEYE---------DTLETELE 948

Query: 488  RSLDSLKAERDRLESDVISRDDRMDQMEKHLQQLHMEHTELIKGAEDAHRMVGELRLKAK 547
            R ++ L+ E + L          +  +E++               E+      EL+ + +
Sbjct: 949  REIERLEEEIEALG------PVNLRAIEEY---------------EEVEERYEELKSQRE 987

Query: 548  ELEEEIEKQRVVILEGAEEKREAIRQLC 575
            +LEE  EK   VI E  +EKRE  ++  
Sbjct: 988  DLEEAKEKLLEVIEELDKEKRERFKETF 1015

Length = 1163

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 67.4 bits (165), Expect = 1e-11
 Identities = 69/350 (19%), Positives = 137/350 (39%), Gaps = 42/350 (12%)

Query: 194 KVNELETELREAKEKLHSQEERIADESMKGAKNENPEALFARIVGYEKKLRLANEKIHIS 253
           +   L  E RE +     +E+   +           EA+  ++   E++L    E+I   
Sbjct: 212 RYQALLKEKREYEGYELLKEKEALERQK--------EAIERQLASLEEELEKLTEEISEL 263

Query: 254 NEEILRLKIELQKYN------SSETNNYLQADFGS-PAEINVNMWDAELQEGINGLETPS 306
            + +  ++  L++ N        E    ++   G   AEI      A L+  I   E   
Sbjct: 264 EKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEAEI------ASLERSIAEKEREL 317

Query: 307 LDLDNKVKALMEELRITKEKLMLSEAEIASLKQEVES------NRSEKIQTLQNQLQLAQ 360
            D + ++  L  E+     ++   E EI   ++  +          E+++ L+ +L+   
Sbjct: 318 EDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVD 377

Query: 361 KDIATWKSKLNSERKEVSKLQERIKSLKTSLSDRDHEVRDLKMAVSDAEQKIFPEKAQIK 420
           K+ A  + +L   R+++ KL+  I  LK  L     E++ L   ++D    I    A I+
Sbjct: 378 KEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAI----AGIE 433

Query: 421 AEILGLYEEKACLVEQLREWESRGRSLEDELRIIKTQKTELEERIVGEIEQLKASIAERD 480
           A+I  L EEK     ++++        E +L  +    ++ E+    E+  LK      +
Sbjct: 434 AKINELEEEKEDKALEIKK-------QEWKLEQLAADLSKYEQ----ELYDLKEEYDRVE 482

Query: 481 KHIENLNRSLDSLKAERDRLESDVISRDDRMDQMEKHLQQLHMEHTELIK 530
           K +  L R L   +A+    E  V       + ++  +Q +H    +L  
Sbjct: 483 KELSKLQRELAEAEAQARASEERVRGGRAVEEVLKASIQGVHGTVAQLGS 532

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 67.4 bits (165), Expect = 2e-11
 Identities = 66/273 (24%), Positives = 134/273 (49%), Gaps = 19/273 (6%)

Query: 306 SLDLDNKVKALMEELRITKEKLMLSEAEIASLKQEVESNRSEKIQTLQNQLQLAQKDIAT 365
           SL    ++K L EEL   + +L   E E+ SLK E+ S   + ++ L+ QL+  ++ +  
Sbjct: 662 SLAQKRELKELEEELAELEAQLEKLEEELKSLKNELRS-LEDLLEELRRQLEELERQLEE 720

Query: 366 WKSKLNSERKEVSKLQERIKSLKTSLSDRDHEVRDLKMAVSDAEQKIFPEKAQIKAEILG 425
            K +L +  +E+ +LQ R++ L+  L + + E+ +L+  + + E+++      ++  +  
Sbjct: 721 LKRELAALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEEL----ESLEEALAK 776

Query: 426 LYEEKACLVEQLREWESRGRSLEDELRIIKTQKTELEERIVGEIEQLKASIAERDKHIEN 485
           L EE   L E+ +  +     LE+EL   + +   LE     E+E L+      ++ IE 
Sbjct: 777 LKEEIEELEEKRQALQEELEELEEELEEAERRLDALER----ELESLEQRRERLEQEIEE 832

Query: 486 LNRSLDSLKAERDRLESDVISRDDRMDQMEKHLQQLHMEHTELIKGAEDAHRMVGELRLK 545
           L   ++ L+ + D LE ++   +  ++++++ L+    E     +  ED      EL  +
Sbjct: 833 LEEEIEELEEKLDELEEELEELEKELEELKEELE----ELEAEKEELEDEL---KELEEE 885

Query: 546 AKELEEEIEKQ---RVVILEGAEEKREAIRQLC 575
            +ELEEE+ +       + E  E+ RE + +L 
Sbjct: 886 KEELEEELRELESELAELKEEIEKLRERLEELE 918

Length = 1163

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 65.8 bits (161), Expect = 4e-11
 Identities = 67/262 (25%), Positives = 126/262 (48%), Gaps = 26/262 (9%)

Query: 329 LSEAEIASLKQEVESNRSEKIQTLQNQLQLAQKDIATWKSKLNSERKEVSKLQERIKSLK 388
           L E E+A L   +E  R E+++ LQ +L+ A++++    ++L    +++ +L+  +  L+
Sbjct: 222 LRELELALLVLRLEELR-EELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELE 280

Query: 389 TSLSDRDHEVRDLKMAVSDAEQKIFPEKAQIKAEILGLYEEKACLVEQLREWESRGRSLE 448
             + +   E+  L   +S  EQ    +K  ++  +  L  +   L  QL E ES+   L 
Sbjct: 281 EEIEELQKELYALANEISRLEQ----QKQILRERLANLERQLEELEAQLEELESKLDELA 336

Query: 449 DELRIIKTQKTELEERIVGEIEQLKASIAERDKHIENLNRSLDSLKAERDRLESDVISR- 507
           +EL  ++ +  EL+E    E+E L+A + E +  +E L   L+ L+ + + L S V    
Sbjct: 337 EELAELEEKLEELKE----ELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLE 392

Query: 508 -------------DDRMDQMEKHLQQLHMEHTELIKGAEDA--HRMVGELRLKAKELEEE 552
                        + R++++E   ++L  E  EL+K  E+A    +  EL    +ELEE 
Sbjct: 393 LQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEEL 452

Query: 553 IEKQRVVILEGAEEKREAIRQL 574
            E+   +  E  EE RE + + 
Sbjct: 453 QEELERLE-EALEELREELEEA 473

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 65.1 bits (159), Expect = 8e-11
 Identities = 71/324 (21%), Positives = 144/324 (44%), Gaps = 31/324 (9%)

Query: 194 KVNELETELREAKEKLHSQEERIADESMKGAKNENPEA----LFARIVGYEKKLRLANEK 249
           ++ ++  EL    + L  Q E+   E  K  K E  E     L  R+    ++L    E+
Sbjct: 190 RLEDILNELERQLKSLERQAEKA--ERYKELKAELRELELALLVLRLEELREELEELQEE 247

Query: 250 IHISNEEILRLKIELQKYNSSETNNYLQADFGSPAEINVNMWDAELQEGINGLETPSLDL 309
           +  + EE+  L  ELQ+         L+               +EL+E I  L+     L
Sbjct: 248 LKEAEEELEELTAELQELEEKLEELRLE--------------VSELEEEIEELQKELYAL 293

Query: 310 DNKVKALMEELRITKEKLMLSEAEIASLKQEVESNRSEKIQTLQNQLQLAQKDIATWKSK 369
            N++  L ++ +I +E+L   E ++  L+ ++E   S K+  L  +L   ++ +   K +
Sbjct: 294 ANEISRLEQQKQILRERLANLERQLEELEAQLEELES-KLDELAEELAELEEKLEELKEE 352

Query: 370 LNSERKEVSKLQERIKSLKTSLSDRDHEVRDLKMAVSDAEQKIFPEKAQIKAEILGLYEE 429
           L S   E+ +L+  ++ L++ L + + ++  L+  V+  E +I    A +  EI  L   
Sbjct: 353 LESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQI----ASLNNEIERLEAR 408

Query: 430 KACLVEQLREWESRGRSLEDELRIIKTQKTELEERIVGEIEQLKASIAERDKHIENLNRS 489
              L ++    +     L  +L     ++ EL+E +  E+E+L+  + E  + +E L  +
Sbjct: 409 LERLEDRRERLQQEIEELLKKL-----EEAELKE-LQAELEELEEELEELQEELERLEEA 462

Query: 490 LDSLKAERDRLESDVISRDDRMDQ 513
           L+ L+ E +  E  + + +  + Q
Sbjct: 463 LEELREELEEAEQALDAAERELAQ 486

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 64.3 bits (157), Expect = 1e-10
 Identities = 67/272 (24%), Positives = 140/272 (51%), Gaps = 20/272 (7%)

Query: 308 DLDNKVKALMEELRITKEKLMLSEAEIASLKQEVESNRSEKIQTLQNQLQLAQKDIATWK 367
           +++ +++ L +E    KE+L   E +++SL+QE+E+ +SE ++ L+ +++  ++D+   +
Sbjct: 720 EIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSE-LKELEARIEELEEDLHKLE 778

Query: 368 SKLNSERKEVSKLQERIKSLKTSLSDRDHEVRDLKMAVSDAEQKIFPEKAQIKAEILGLY 427
             LN    E      RI  ++  LS  + EV  ++  + + EQK+   +  ++ E L   
Sbjct: 779 EALND--LEARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKL--NRLTLEKEYLE-- 832

Query: 428 EEKACLVEQLREWESRGRSLEDELRIIKTQKTELEERIVGEIEQLKASIAERDKHIENLN 487
           +E   L EQ  + + + +S+E E+  +  +K ELEE    E+E+L+A++ +       L 
Sbjct: 833 KEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEE----ELEELEAALRD-------LE 881

Query: 488 RSLDSLKAERDRLESDVISRDDRMDQMEKHLQQLHMEHTELIKGAEDAHRMVGELRLKAK 547
             L  LK ERD LE+ +   + +++++E  +++     +EL    E     + E+     
Sbjct: 882 SRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKG 941

Query: 548 ELEEEIEKQRVVILEGAEEKREAIRQLCFSLE 579
           E EE  E+   + LE  + + + + +   +LE
Sbjct: 942 EDEEIPEE--ELSLEDVQAELQRVEEEIRALE 971

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 63.6 bits (155), Expect = 2e-10
 Identities = 57/246 (23%), Positives = 121/246 (49%), Gaps = 19/246 (7%)

Query: 345 RSEKIQTLQNQLQLAQKDIATWKSKLNSERKEVSKLQERIKSLKTSLSDRDHEVRDLKMA 404
           +  +++ L+ +L   +  +   + +L S + E+  L++ ++ L+  L + + ++ +LK  
Sbjct: 665 QKRELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKRE 724

Query: 405 VSDAEQKIFPEKAQIKAEILGLYEEKACLVEQLREWESRGRSLEDELRIIKTQKTELEER 464
           ++  E+    E  Q+++ +  L EE   L E+L E + R   LE+EL  ++    +L+E 
Sbjct: 725 LAALEE----ELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAKLKE- 779

Query: 465 IVGEIEQLKASIAERDKHIENLNRSLDSLKAERDRLESDVISRDDRMDQMEKHLQQLHME 524
              EIE+L+       + +E L   L+  +   D LE ++ S + R +++E+ +++L   
Sbjct: 780 ---EIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEEL--- 833

Query: 525 HTELIKGAEDAHRMVGELRLKAKELEEEIEKQRVVILEGAEEKREAIRQLCFSLEHYRSG 584
             E I+  E+    + EL  + +ELE+E+E+    + E  EE      +L   L+     
Sbjct: 834 -EEEIEELEEK---LDELEEELEELEKELEE----LKEELEELEAEKEELEDELKELEEE 885

Query: 585 YISLRK 590
              L +
Sbjct: 886 KEELEE 891

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 62.8 bits (153), Expect = 4e-10
 Identities = 57/262 (21%), Positives = 126/262 (48%), Gaps = 4/262 (1%)

Query: 293 AELQEGINGLETPSLDLDNKVKALMEELRITKEKLMLSEAEIASLKQEVESNRSEKIQTL 352
            ELQE +   E    +L ++++ L EEL   +E+L+  + EI  L+ E+   R E+++ L
Sbjct: 256 EELQEELEEAEKEIEELKSELEELREELEELQEELLELKEEIEELEGEISLLR-ERLEEL 314

Query: 353 QNQLQLAQKDIATWKSKLNSERKEVSKLQERIKSLKTSLSDRDHEVRDLKMAVSDAEQKI 412
           +N+L+  ++ +   K K+ + ++E+ + +  ++ L+  L++ +    +L+  +S   +++
Sbjct: 315 ENELEELEERLEELKEKIEALKEELEERETLLEELEQLLAELEEAKEELEEKLSALLEEL 374

Query: 413 FPEKAQIKAEILGLYEEKACLVEQLREWESRGRSLEDELRIIKTQKTELEERI---VGEI 469
                 ++ E+  L  E A +  +L E +    SLE+ L  +  +  +L+E +     E+
Sbjct: 375 EELFEALREELAELEAELAEIRNELEELKREIESLEERLERLSERLEDLKEELKELEAEL 434

Query: 470 EQLKASIAERDKHIENLNRSLDSLKAERDRLESDVISRDDRMDQMEKHLQQLHMEHTELI 529
           E+L+  + E ++ +E L   L+ L+     LE ++    + + ++EK L  L      L 
Sbjct: 435 EELQTELEELNEELEELEEQLEELRDRLKELERELAELQEELQRLEKELSSLEARLDRLE 494

Query: 530 KGAEDAHRMVGELRLKAKELEE 551
                +  +   L      L  
Sbjct: 495 AEQRASQGVRAVLEALESGLPG 516

Length = 1163

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 61.6 bits (150), Expect = 8e-10
 Identities = 54/268 (20%), Positives = 126/268 (47%), Gaps = 17/268 (6%)

Query: 310 DNKVKALMEELRITKEKLMLSEAEIASLKQEVESNRSEKIQTLQNQLQLAQKDIATWKSK 369
           + +   L++E    + +    E ++ASL++E+E   +E+I  L+ +L+  ++ +     K
Sbjct: 222 EYEGYELLKEKEALERQKEAIERQLASLEEELE-KLTEEISELEKRLEEIEQLLEELNKK 280

Query: 370 LNSE-RKEVSKLQERIKSLKTSLSDRDHEVRDLKMAVSDAEQKIFPEKAQIKAEILGLYE 428
           +     +E  +++E+I  L+  ++  +  + + +  + DAE+++    A+++AEI  L  
Sbjct: 281 IKDLGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERL----AKLEAEIDKLLA 336

Query: 429 EKACLVEQLREWESRGRSLEDELRIIKTQKTELEERIVGEIEQLKASIAE---RDKHIEN 485
           E   L  ++ E   R   L +E   +K +  +L   +    ++   +  E     + +E 
Sbjct: 337 EIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEK 396

Query: 486 LNRSLDSLKAERDRLESDVISRDDRMDQMEKHLQQLHMEHTELIKGAEDAHRMVGELRLK 545
           L R ++ LK E DRL+ ++    + +  +   +  +  +  EL +  ED         L+
Sbjct: 397 LKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDK-------ALE 449

Query: 546 AKELEEEIEKQRVVILEGAEEKREAIRQ 573
            K+ E ++E Q    L   E++   +++
Sbjct: 450 IKKQEWKLE-QLAADLSKYEQELYDLKE 476

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 61.2 bits (149), Expect = 1e-09
 Identities = 62/263 (23%), Positives = 129/263 (49%), Gaps = 8/263 (3%)

Query: 317 MEELRITKEKLMLSEAEIASLKQEVESNRSEKIQTLQNQLQLAQKDIATWKSKLNSERKE 376
           +EEL+   ++      E+ +  QE+E    EK++ L+ ++   +++I   + +L +   E
Sbjct: 241 LEELQEELKEAEEELEELTAELQELE----EKLEELRLEVSELEEEIEELQKELYALANE 296

Query: 377 VSKLQERIKSLKTSLSDRDHEVRDLKMAVSDAEQKIFPEKAQIKAEILGLYEEKACLVEQ 436
           +S+L+++ + L+  L++ + ++ +L+  + + E K+  E A+  AE+    EE    +E 
Sbjct: 297 ISRLEQQKQILRERLANLERQLEELEAQLEELESKL-DELAEELAELEEKLEELKEELES 355

Query: 437 LREWESRGRSLEDELRIIKTQKTELEERIVGEIEQLKASIAERDKHIENLNRSLDSLKAE 496
           L        +  +EL     +  E  E +  ++ QL+  IA  +  IE L   L+ L+  
Sbjct: 356 LEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDR 415

Query: 497 RDRLESDVISRDDRMDQMEKHLQQLHMEHTELIKGAEDAHRMVGELRLKAKELEEEIEKQ 556
           R+RL+ ++     +++  E  L++L  E  EL +  E+    +  L    +EL EE+E+ 
Sbjct: 416 RERLQQEIEELLKKLE--EAELKELQAELEELEEELEELQEELERLEEALEELREELEEA 473

Query: 557 RVVILEGAEEKREAIRQLCFSLE 579
              +   AE +   ++    SLE
Sbjct: 474 EQALDA-AERELAQLQARLDSLE 495

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 60.1 bits (146), Expect = 3e-09
 Identities = 63/230 (27%), Positives = 111/230 (48%), Gaps = 29/230 (12%)

Query: 372 SERKEVSKLQERIKSLKTSLSD-------RDHEVRDLKMAVSDAEQKIFPEKAQIKAEIL 424
           SE  E+ +L+ER++ LK  LS         ++ + +L   +SDA +KI   + + + E L
Sbjct: 671 SEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKI--GEIEKEIEQL 728

Query: 425 GLYEEKACLVEQLREWESRGRSLEDELRIIKTQKTELEERIV---GEIEQLKASIAE--- 478
              EEK  L E+L E E    SLE E+  +K++  ELE RI     ++ +L+ ++ +   
Sbjct: 729 EQEEEK--LKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEA 786

Query: 479 --RDKHIENLNRSLDSLKAERDRLESDVISRDDRMDQMEKHLQQLHMEHTELIKGAEDAH 536
                 I  +   L  L+ E  R+E+       R+ ++E+ L +L +E   L K  ++  
Sbjct: 787 RLSHSRIPEIQAELSKLEEEVSRIEA-------RLREIEQKLNRLTLEKEYLEKEIQELQ 839

Query: 537 RMVGELRLKAKELEEEIE---KQRVVILEGAEEKREAIRQLCFSLEHYRS 583
               +L+ + K +E+EIE    ++  + E  EE   A+R L   L   + 
Sbjct: 840 EQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKK 889

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 58.5 bits (142), Expect = 7e-09
 Identities = 66/338 (19%), Positives = 143/338 (42%), Gaps = 16/338 (4%)

Query: 189  QGLQRKVNELETELREAKEKLHSQEERIADESMKGAKNENPEALFARIVGYEKKLRLANE 248
            + L R+++ L  +L   + ++   EERIA  S      +    L A I   E++L  A E
Sbjct: 722  EELSRQISALRKDLARLEAEVEQLEERIAQLS------KELTELEAEIEELEERLEEAEE 775

Query: 249  KIHISNEEILRLKIELQKYNSSETNNYLQADFGSPAEINVNMWDAELQEGINGLETPSLD 308
            ++  +  EI  L+ ++++            D        +N   A L+E +  LE     
Sbjct: 776  ELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAA 835

Query: 309  LDNKVKALMEELRITKEKLMLSEAEIASLKQEVESNRSEKIQTLQNQLQLAQKDIATWKS 368
             + +++ L E++    E +    AEI  L +E+      +++ L N+    ++ +A  +S
Sbjct: 836  TERRLEDLEEQIEELSEDIESLAAEIEEL-EELIEELESELEALLNERASLEEALALLRS 894

Query: 369  KLNSERKEVSKLQERIKSLKTSLSDRDHEVRDLKMAVSDAEQKIFPEKAQIKAEILGLYE 428
            +L    +E+ +L+ +   L+  L +   ++  L++ +   E +I      ++  +   Y 
Sbjct: 895  ELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRI----DNLQERLSEEYS 950

Query: 429  EKACLVEQL-REWESRGRSLEDELRIIKTQKTELEE---RIVGEIEQLKASIAERDKHIE 484
                  E L  + E         L+ ++ +  EL       + E E+LK          E
Sbjct: 951  LTLEEAEALENKIEDDEEEARRRLKRLENKIKELGPVNLAAIEEYEELKERYDFLTAQKE 1010

Query: 485  NLNRSLDSLKAERDRLESDVISR-DDRMDQMEKHLQQL 521
            +L  + ++L+   + ++ +   R  D  DQ+ ++ Q++
Sbjct: 1011 DLTEAKETLEEAIEEIDREARERFKDTFDQVNENFQRV 1048

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 57.8 bits (140), Expect = 1e-08
 Identities = 46/201 (22%), Positives = 90/201 (44%), Gaps = 8/201 (3%)

Query: 374 RKEVSKLQERIKSLKTSLSDRDHEVRDLKMAVSDAEQKIFPEKAQIKAEILGLYEEKACL 433
            +++ +L+E+I  L+ +L++   E+ +L+  +    +    E  ++  +I  L ++ A L
Sbjct: 683 EEKIEELEEKIAELEKALAELRKELEELEEELEQLRK----ELEELSRQISALRKDLARL 738

Query: 434 VEQLREWESRGRSLEDELRIIKTQKTELEERIVGEIEQLKASIAERDKHIENLNRSLDSL 493
             ++ + E R   L  EL  ++ +  ELEER    +E+ +  +AE +  IE L   ++ L
Sbjct: 739 EAEVEQLEERIAQLSKELTELEAEIEELEER----LEEAEEELAEAEAEIEELEAQIEQL 794

Query: 494 KAERDRLESDVISRDDRMDQMEKHLQQLHMEHTELIKGAEDAHRMVGELRLKAKELEEEI 553
           K E   L   +      +  + +    L      L +      R + +L  + +EL E+I
Sbjct: 795 KEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDI 854

Query: 554 EKQRVVILEGAEEKREAIRQL 574
           E     I E  E   E   +L
Sbjct: 855 ESLAAEIEELEELIEELESEL 875

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 57.4 bits (139), Expect = 2e-08
 Identities = 66/335 (19%), Positives = 143/335 (42%), Gaps = 36/335 (10%)

Query: 184 GNGDDQGLQRKVNELETELREAKEKLHSQEERIADESMKGAKNENPEALFARIVGYEKKL 243
            N      +R++ ELE ++ E +EK+   E+ +A+      + E  E         E++L
Sbjct: 668 TNSSILERRREIEELEEKIEELEEKIAELEKALAE-----LRKELEE--------LEEEL 714

Query: 244 RLANEKIHISNEEILRLKIELQKYNSSETNNYLQADFGSPAEINVNMWDAELQEGINGLE 303
               +++   + +I  L+ +L +  +       +    S     +     EL+E +   E
Sbjct: 715 EQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAE 774

Query: 304 TPSLDLDNKVKALMEELRITKEKLMLSEAEIASLKQEVESNRSEKIQTLQNQLQLAQKDI 363
               + + +++ L  ++   KE+L      +  L+ E+ +  +E+   L+ +L+  ++ I
Sbjct: 775 EELAEAEAEIEELEAQIEQLKEELKALREALDELRAEL-TLLNEEAANLRERLESLERRI 833

Query: 364 ATWKSKLNSERKEVSKLQERIKSLKTSLSDRDHEVRDLKMAVSDAEQKIFPEKAQIKAEI 423
           A  + +L    +++ +L E I+SL   + + +  + +L+  +         E+A ++  +
Sbjct: 834 AATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLN----ERASLEEAL 889

Query: 424 LGLYEEKACLVEQLREWESRGRSLEDELRIIKTQKTELEERIVG---EIEQLKASIAE-- 478
             L  E   L E+LRE ES+   L  EL  ++ +  +LE R+ G    I+ L+  ++E  
Sbjct: 890 ALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEY 949

Query: 479 -------------RDKHIENLNRSLDSLKAERDRL 500
                         +   E   R L  L+ +   L
Sbjct: 950 SLTLEEAEALENKIEDDEEEARRRLKRLENKIKEL 984

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|227278 COG4942, COG4942, Membrane-bound metallopeptidase [Cell division and chromosome partitioning]

 Score = 56.3 bits (136), Expect = 3e-08
 Identities = 47/247 (19%), Positives = 102/247 (41%), Gaps = 9/247 (3%)

Query: 345 RSEKIQTLQNQLQLAQKDIATWKSKLNSERKEVSKLQERIKSLKTSLSDRDHEVRDLKMA 404
            +        QL+  QK+IA  + K+  ++ + +KL++++KSL+T ++  + ++ +    
Sbjct: 29  AAFSAAADDKQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADD 88

Query: 405 VSDAEQKIFPEKAQIKAEILGLYEEKACLVEQLREWESRGRSLEDELRIIKTQKTELEER 464
           +    ++I    A++ A  +   E++  L EQL     R         ++  +  +   R
Sbjct: 89  LKKLRKQIADLNARLNALEVQEREQRRRLAEQLA-ALQRSGRNPPPALLVSPEDAQRSVR 147

Query: 465 IVGEIEQLKASIAERDKHIENLNRSLDSLKAERDRLESDVISRDDRMDQMEKHLQQLHME 524
           +      L  + AER   ++   + L +++AE    ++++ +        +  L QL  E
Sbjct: 148 LAIYYGALNPARAERIDALKATLKQLAAVRAEIAAEQAELTTLLSEQRAQQAKLAQLLEE 207

Query: 525 HTELIKG-----AEDAHRMVGELRLKAKELEEEIEKQRVVILEGAE--EKREAIRQLCFS 577
             + +       + D  ++  ELR     L+ EI        +  E     EA      +
Sbjct: 208 RKKTLAQLNSELSADQKKL-EELRANESRLKNEIASAEAAAAKAREAAAAAEAAAARARA 266

Query: 578 LEHYRSG 584
            E  R+G
Sbjct: 267 AEAKRTG 273

Length = 420

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 56.2 bits (136), Expect = 4e-08
 Identities = 63/315 (20%), Positives = 134/315 (42%), Gaps = 44/315 (13%)

Query: 191 LQRKVNELETELREAKEKLHSQEERIADESMKGAKNENPEALFARIVGYEKKLRLANEKI 250
            + ++ EL  EL+E +EKL  +E R+    +                  E+++    +++
Sbjct: 251 AEEELEELTAELQELEEKL--EELRLEVSEL------------------EEEIEELQKEL 290

Query: 251 HISNEEILRLKIELQKYNSSETNNYLQADFGSPAEINVNMWDAELQEGINGLETPSLDLD 310
           +    EI RL+ + Q                           A L+  +  LE    +L+
Sbjct: 291 YALANEISRLEQQKQILRERL---------------------ANLERQLEELEAQLEELE 329

Query: 311 NKVKALMEELRITKEKLMLSEAEIASLKQEVESNRSEKIQTLQNQLQLAQKDIATWKSKL 370
           +K+  L EEL   +EKL   + E+ SL+ E+E     +++ L+++L+  ++ + T +SK+
Sbjct: 330 SKLDELAEELAELEEKLEELKEELESLEAELE-ELEAELEELESRLEELEEQLETLRSKV 388

Query: 371 NSERKEVSKLQERIKSLKTSLSDRDHEVRDLKMAVSDAEQKIF-PEKAQIKAEILGLYEE 429
                +++ L   I+ L+  L   +     L+  + +  +K+   E  +++AE+  L EE
Sbjct: 389 AQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEE 448

Query: 430 KACLVEQLREWESRGRSLEDELRIIKTQKTELEERIVGEIEQLKASIAERDKHIENLNRS 489
              L E+L   E     L +EL   +      E   + +++    S+    +++E  +  
Sbjct: 449 LEELQEELERLEEALEELREELEEAEQALDAAERE-LAQLQARLDSLERLQENLEGFSEG 507

Query: 490 LDSLKAERDRLESDV 504
           + +L   +  L   +
Sbjct: 508 VKALLKNQSGLSGIL 522

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 53.9 bits (130), Expect = 2e-07
 Identities = 54/291 (18%), Positives = 125/291 (42%), Gaps = 24/291 (8%)

Query: 308 DLDNKVKALMEELRITKEKLMLSEAEIASLKQEVESNRSEKIQTLQNQ-LQLAQKDIATW 366
           + D K +  +EEL   +E +   +  I   +Q++E  R E+ +  + Q L   +++   +
Sbjct: 167 EFDRKKEKALEELEEVEENIERLDLIIDEKRQQLERLRREREKAERYQALLKEKREYEGY 226

Query: 367 ---KSKLNSER------KEVSKLQERIKSLKTSLSDRDHEVRDLKMAVSDAEQKIFP--- 414
              K K   ER      ++++ L+E ++ L   +S+ +  + +++  + +  +KI     
Sbjct: 227 ELLKEKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGE 286

Query: 415 -EKAQIKAEILGLYEEKACLVEQLREWESRGRSLEDELRI-------IKTQKTELEERI- 465
            E+ ++K +I  L  E A L   + E E      E+ L         +  +  ELE  I 
Sbjct: 287 EEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIE 346

Query: 466 --VGEIEQLKASIAERDKHIENLNRSLDSLKAERDRLESDVISRDDRMDQMEKHLQQLHM 523
                 ++L    AE  + +E+L   L+ +  E      ++    ++++++++ + +L  
Sbjct: 347 EERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKR 406

Query: 524 EHTELIKGAEDAHRMVGELRLKAKELEEEIEKQRVVILEGAEEKREAIRQL 574
           E   L +  +     + +L      +E +I +      + A E ++   +L
Sbjct: 407 ELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKL 457

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 52.8 bits (127), Expect = 4e-07
 Identities = 62/280 (22%), Positives = 125/280 (44%), Gaps = 34/280 (12%)

Query: 189 QGLQRKVNELETELREAKEKLHSQEERIADESMKGAKNENPEALFARIVGYEKKLRLANE 248
           + L+ +++ LE EL E +E+L   E+ I +                     + +L    E
Sbjct: 242 EELEEELSRLEEELEELQEELEEAEKEIEE--------------------LKSELEELRE 281

Query: 249 KIHISNEEILRLKIELQKYNSSETNNYLQADFGSPAEINVNMWDAELQEGINGLETPSLD 308
           ++    EE+L LK E+++     +    + +        +     EL+E I  L      
Sbjct: 282 ELEELQEELLELKEEIEELEGEISLLRERLEELENELEELEERLEELKEKIEAL------ 335

Query: 309 LDNKVKALMEELRITKEKLMLSEAEIASLKQEVESNRSEKIQTLQNQLQLAQKDIATWKS 368
                K  +EE     E+L    AE+   K+E+E   S  ++ L+   +  ++++A  ++
Sbjct: 336 -----KEELEERETLLEELEQLLAELEEAKEELEEKLSALLEELEELFEALREELAELEA 390

Query: 369 KLNSERKEVSKLQERIKSLKTSLSDRDHEVRDLKMAVSDAEQKI---FPEKAQIKAEILG 425
           +L   R E+ +L+  I+SL+  L      + DLK  + + E ++     E  ++  E+  
Sbjct: 391 ELAEIRNELEELKREIESLEERLERLSERLEDLKEELKELEAELEELQTELEELNEELEE 450

Query: 426 LYEEKACLVEQLREWESRGRSLEDELRIIKTQKTELEERI 465
           L E+   L ++L+E E     L++EL+ ++ + + LE R+
Sbjct: 451 LEEQLEELRDRLKELERELAELQEELQRLEKELSSLEARL 490

Length = 1163

>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional

 Score = 52.7 bits (127), Expect = 4e-07
 Identities = 88/423 (20%), Positives = 166/423 (39%), Gaps = 97/423 (22%)

Query: 188 DQGLQRKVNELETELREAKEKL-HSQEERIADESMKGAKNENPEALFARIVGYEKKLRLA 246
           ++ L  ++N LE+EL E  E++   +E+R      +   +E        +  +E++    
Sbjct: 201 EKDLHERLNGLESELAELDEEIERYEEQREQARETRDEADE-------VLEEHEERR--- 250

Query: 247 NEKIHISNEEILRLKIELQKYNSSETNNYLQADFGSPAEINVNMWDAELQEGINGLETPS 306
                   EE+  L+ E+                             +L+E I   E   
Sbjct: 251 --------EELETLEAEI----------------------------EDLRETIAETERER 274

Query: 307 LDLDNKVKALMEELRITKEKL--MLSEAEIASLKQEVESNR----SEKIQTLQNQLQLAQ 360
            +L  +V+ L E L   +E+   +L+EA +     E    R     ++ + L+++L+  +
Sbjct: 275 EELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARREELEDRDEELRDRLEECR 334

Query: 361 KDIATWKSKLNSERKEVSKLQERIKSLKTSLSDRDHEVRDLKMAVSDAEQKIFPEKAQIK 420
                   +  S R++   L+ER + L+   ++ + E+ + + AV D  ++I     +++
Sbjct: 335 VAAQAHNEEAESLREDADDLEERAEELREEAAELESELEEAREAVEDRREEI----EELE 390

Query: 421 AEILGLYEEKACLVEQLREWESRGRSLEDELRIIKTQKTELE------ERIVGEIEQLKA 474
            EI  L E        L   E     L +E   ++ ++ ELE         V E E L  
Sbjct: 391 EEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAELEATLRTARERVEEAEALLE 450

Query: 475 ------------------SIAERDKHIENLNRSLDSLKAERDRLESDV---------ISR 507
                             +I E  + +E L   L+ L+ E + +E  +           R
Sbjct: 451 AGKCPECGQPVEGSPHVETIEEDRERVEELEAELEDLEEEVEEVEERLERAEDLVEAEDR 510

Query: 508 DDRMDQMEKHLQQLHMEHTELIKGAEDAHRMVGELRLKAKELEEEIEKQRVVILEGAEEK 567
            +R+++  + L++L  E  E I+   +      ELR +A ELE E E++R    E A E 
Sbjct: 511 IERLEERREDLEELIAERRETIEEKRER---AEELRERAAELEAEAEEKR----EAAAEA 563

Query: 568 REA 570
            E 
Sbjct: 564 EEE 566

Length = 880

>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional

 Score = 52.8 bits (127), Expect = 4e-07
 Identities = 67/275 (24%), Positives = 127/275 (46%), Gaps = 24/275 (8%)

Query: 312 KVKALMEELRITKEKLMLSEAEIASLKQEVESNRSEKIQTLQNQLQLAQKDIATWKSKLN 371
           +V   ++      EK +     I  L +E E    E ++ + N++     ++     KL 
Sbjct: 169 EVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREI-NEISSELPELREELEKLE 227

Query: 372 SERKEVSKLQERIKSLKTSLSDRDHEVRDLKMAVSDAEQKIFPEKAQIK---------AE 422
            E KE+ +L+E I+ L+  L   +   R L+  + + E++I   K +I+          E
Sbjct: 228 KEVKELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKE 287

Query: 423 ILGLYEEKACLVEQLREWESRGRSLEDELRIIKTQKTELEERIVGEIEQLKASIAERDKH 482
           +    EE   L E   E+    R +E  L  ++ +   +EERI  E+E+ +  + E  K 
Sbjct: 288 LKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERI-KELEEKEERLEELKKK 346

Query: 483 IENLNRSLDSLKAERDRLESDVISRDDRMDQMEKHLQQLHMEHTELIKGAEDAHRMVGEL 542
           ++ L + L+ L+ ER  L  +  ++ + +++++K L  L  E  E         + + EL
Sbjct: 347 LKELEKRLEELE-ERHELYEEAKAKKEELERLKKRLTGLTPEKLE---------KELEEL 396

Query: 543 RLKAKELEEEIEK--QRVVILEG-AEEKREAIRQL 574
               +E+EEEI K   R+  L+   +E ++AI +L
Sbjct: 397 EKAKEEIEEEISKITARIGELKKEIKELKKAIEEL 431

Length = 880

>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional

 Score = 52.7 bits (127), Expect = 5e-07
 Identities = 58/222 (26%), Positives = 95/222 (42%), Gaps = 22/222 (9%)

Query: 373 ERKEVSKLQERIKSLKTSLSDRDHEV------RDLKMAVSDAEQKIFPEKAQIKAEILGL 426
           E KE   L ER+  L++ L++ D E+      R+      D   ++  E  + + E+  L
Sbjct: 197 EEKEEKDLHERLNGLESELAELDEEIERYEEQREQARETRDEADEVLEEHEERREELETL 256

Query: 427 YEEKACLVEQLREWESRGRSLEDELRIIKTQKTELEERIVG----------EIEQLKASI 476
             E   L E + E E     L +E+R ++ +  ELEE              + E ++A  
Sbjct: 257 EAEIEDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARR 316

Query: 477 AERDKHIENLNRSLDSLKAERDRLESDVISRDDRMDQMEKHLQQLHMEHTELIKGAEDAH 536
            E +   E L   L+  +        +  S  +  D +E+  ++L  E  EL    E+A 
Sbjct: 317 EELEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEERAEELREEAAELESELEEAR 376

Query: 537 RMVGELRLKAKELEEEIEKQRV------VILEGAEEKREAIR 572
             V + R + +ELEEEIE+ R       V L  AE+  E +R
Sbjct: 377 EAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELR 418

Length = 880

>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]

 Score = 50.5 bits (121), Expect = 2e-06
 Identities = 57/232 (24%), Positives = 105/232 (45%), Gaps = 14/232 (6%)

Query: 340 EVESNRSEKIQTLQNQLQLAQKDIATWKSKLNSERKEVSKLQERIKSLKTSLSDRDHEVR 399
           EV      KI+ L+ QL    +DI      L  E KE+ KL+E  +  +    ++  E+ 
Sbjct: 178 EVIKEAKAKIEELEGQLSELLEDIEDLLEALEEELKELKKLEEIQEEQEEEELEQ--EIE 235

Query: 400 DLKMAVSDAEQKIFPEKAQIKAEILGLYEEKACLVEQLREWESRGRSLEDELRIIKTQKT 459
            L+  +++ E+    EK +++     L E ++  +E L+  E   R LE  L  ++ +  
Sbjct: 236 ALEERLAELEE----EKERLEELKARLLEIESLELEALKIREEELRELERLLEELEEKIE 291

Query: 460 ELEERIVGEIEQLKASIAERDKHIENLNRSLDSLKAERDRLESDVISRDDRMDQMEKHLQ 519
            LEE    EIE+L+  +      +E L   L+ LK+  +RLE      +    ++E+  +
Sbjct: 292 RLEELE-REIEELEEELEGLRALLEELEELLEKLKSLEERLEKLEEKLEKLESELEELAE 350

Query: 520 QLHMEHTELIKGAEDAHRMVGELRLKAKELEEEIEKQRVVILEGAEEKREAI 571
           + +     L +  +       EL  + +ELE+E+EK    + +  E  +E  
Sbjct: 351 EKNELAKLLEERLK-------ELEERLEELEKELEKALERLKQLEEAIQELK 395

Length = 908

>gnl|CDD|222878 PHA02562, 46, endonuclease subunit; Provisional

 Score = 49.6 bits (119), Expect = 4e-06
 Identities = 44/221 (19%), Positives = 97/221 (43%), Gaps = 38/221 (17%)

Query: 347 EKIQTLQNQLQLAQKDIATWKSKLNSERK----EVSKLQERI-------KSLKTSLSDRD 395
           ++IQTL  ++   Q+ I T+   +  +RK     +++ Q +        K++K  + +  
Sbjct: 181 QQIQTLDMKIDHIQQQIKTYNKNIEEQRKKNGENIARKQNKYDELVEEAKTIKAEIEELT 240

Query: 396 HEVRDLKMA---VSDAEQKIFPEKAQIKAEI------LGLYEE----KACLVEQLREWES 442
            E+ +L M     S A  K+    A+IK++I      + +YE+      C  +Q+ E   
Sbjct: 241 DELLNLVMDIEDPSAALNKLNTAAAKIKSKIEQFQKVIKMYEKGGVCPTCT-QQISEGPD 299

Query: 443 RGRSLEDELRIIKTQKTELEERIVGEIEQ-------------LKASIAERDKHIENLNRS 489
           R   ++D+L+ ++    +L+  I    E              LK  I+   + +  L   
Sbjct: 300 RITKIKDKLKELQHSLEKLDTAIDELEEIMDEFNEQSKKLLELKNKISTNKQSLITLVDK 359

Query: 490 LDSLKAERDRLESDVISRDDRMDQMEKHLQQLHMEHTELIK 530
              +KA  + L+++ +   + + +++  L ++    +EL+K
Sbjct: 360 AKKVKAAIEELQAEFVDNAEELAKLQDELDKIVKTKSELVK 400

Length = 562

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 49.3 bits (118), Expect = 5e-06
 Identities = 44/227 (19%), Positives = 107/227 (47%), Gaps = 11/227 (4%)

Query: 355 QLQLAQKDIATWKSKLNSERKEVSKLQERIKSLKTSLSDRDHEVRDLKMAVSDAEQKIFP 414
           +LQ  ++ +   K +L+S + E+ +++ R+  L   LSD   ++ +++  +   EQ+   
Sbjct: 675 ELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEK 734

Query: 415 EKAQIK---AEILGLYEEKACLVEQLREWESRGRSLEDELRIIKTQKTELEER------- 464
            K +++    ++  L +E   +  +L+E E+R   LE++L  ++    +LE R       
Sbjct: 735 LKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHSRIP 794

Query: 465 -IVGEIEQLKASIAERDKHIENLNRSLDSLKAERDRLESDVISRDDRMDQMEKHLQQLHM 523
            I  E+ +L+  ++  +  +  + + L+ L  E++ LE ++    ++   +++ ++ +  
Sbjct: 795 EIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEK 854

Query: 524 EHTELIKGAEDAHRMVGELRLKAKELEEEIEKQRVVILEGAEEKREA 570
           E   L    E+    + EL    ++LE  +   +    E   + RE 
Sbjct: 855 EIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLREL 901

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|221432 pfam12128, DUF3584, Protein of unknown function (DUF3584)

 Score = 49.3 bits (118), Expect = 5e-06
 Identities = 66/305 (21%), Positives = 125/305 (40%), Gaps = 35/305 (11%)

Query: 292 DAELQEGINGLETPSLDLDNKVKALMEELRITKEKLMLSEAEIASLKQEVESNRSEKI-- 349
           + EL+E +   E        K K   E+L     +L   +   A  +  ++  R +    
Sbjct: 602 ETELRERLQQAEEALQSAVAKQKQAEEQLVQANAELEEQKRAEAEARTALKQARLDLQRL 661

Query: 350 ----QTLQNQLQLAQKD-IATWKSKLNSERKEVSKLQERIKSLKTSLSDRDHEVRDLKMA 404
               Q+L+++L+LA  +     +++L     ++ +L E+ ++   +L D   E+R  ++A
Sbjct: 662 QNEQQSLKDKLELAIAERKQQAETQLRQLDAQLKQLLEQQQAFLEALKDDFRELRTERLA 721

Query: 405 -----VSDAEQKIFPEKAQIKAEILGLYEE-KACLVEQLREWESRGRSLEDELRIIKTQK 458
                  + + ++    A I+A         K    +  RE  S      + ++ +K Q 
Sbjct: 722 KWQVVEGELDNQLAQLSAAIEAARTQAKARLKELKKQYDRELASLDVD-PNTVKELKRQI 780

Query: 459 TELEERIVGEIEQLKASIAERDKHIENLNRSLDSLKAERDRLESDVISRDDRMDQMEKHL 518
            ELE  I   I   +  + E    ++      DSL+ ER  L         ++ ++E   
Sbjct: 781 EELETTIER-IAVRRPEVREYRAFMQETWLHRDSLREERPNLAI-------QLRELESSA 832

Query: 519 QQLHMEHTELIKGAEDAHRMVGELRLKAKELEEE---IEKQRVVILEGAEEKREAIRQLC 575
           ++L  E T LIK          + +L+ K+LE+E   +EKQ   + E     R+ +RQL 
Sbjct: 833 EELQQELTRLIK----------DTKLRRKKLEQERKALEKQLDQLDELLRGLRDEMRQLA 882

Query: 576 FSLEH 580
              E 
Sbjct: 883 ELKEP 887

This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication. Length = 1198

>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional

 Score = 48.9 bits (117), Expect = 6e-06
 Identities = 70/289 (24%), Positives = 119/289 (41%), Gaps = 39/289 (13%)

Query: 295 LQEGINGLETPSLDLDNKVKALMEELRITKEKLMLSEAEIASLKQEVESNRSEKIQTLQN 354
           L+E  + LE  + +L  +   L  EL   +E +     EI  L++E+E  R         
Sbjct: 347 LREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRE-------- 398

Query: 355 QLQLAQKDIATWKSKLNSERKEVSKLQERIKSLKTSLSDRDHEVRDLKMAVSDAEQKIFP 414
           +   A  D+   +  L   R+E  +L+ER   L+ +L       R  +  V +AE  +  
Sbjct: 399 RFGDAPVDLGNAEDFLEELREERDELREREAELEATL-------RTARERVEEAEALL-- 449

Query: 415 EKAQIKAEILGLYEEKACLVEQLREWESRGRSLEDELRIIKTQKTELEERIVGEIEQLKA 474
                K    G   E +  VE + E   R   LE EL  ++ +  E+EER+         
Sbjct: 450 --EAGKCPECGQPVEGSPHVETIEEDRERVEELEAELEDLEEEVEEVEERL--------- 498

Query: 475 SIAERDKHIENLNRSLDSLKAERDRLESDVISRDDRMDQMEKHLQQLHMEHTELIKGAED 534
              ER + +      ++ L+  R+ LE  +  R + +++  +  ++L     EL   AE+
Sbjct: 499 ---ERAEDLVEAEDRIERLEERREDLEELIAERRETIEEKRERAEELRERAAELEAEAEE 555

Query: 535 AHRMVGELRLKAKELEEEIEKQRVVILEGAEEKREAIRQLCFSLEHYRS 583
                   R  A E EEE E+ R  + E    K   +++   SLE  R+
Sbjct: 556 K-------REAAAEAEEEAEEAREEVAE-LNSKLAELKERIESLERIRT 596

Length = 880

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 48.1 bits (115), Expect = 1e-05
 Identities = 84/390 (21%), Positives = 173/390 (44%), Gaps = 52/390 (13%)

Query: 187  DDQGLQRKVNELETELREAKEKLHSQEERIADESMK-GAKNENPEALFARIVGYEKKLRL 245
              +GL+R+++ L++ELR  + +L    + ++D S K G   +  E L       +++L  
Sbjct: 682  RLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEE 741

Query: 246  ANEKIHISNEEILRLKIELQKYNSSETNNYLQADFGSPAEINVNMWDAELQEGINGLETP 305
              E +    +EI  +K EL++  +      L+ D              +L+E +N LE  
Sbjct: 742  LEEDLSSLEQEIENVKSELKELEARI--EELEEDL------------HKLEEALNDLE-- 785

Query: 306  SLDLDNKVKALMEELRITKEKLMLSEAEIASLKQEVESNRSEKIQTLQNQLQLAQKDIAT 365
            +    +++  +  EL   +E++   EA +  ++Q++    + + + L+ ++Q  Q+    
Sbjct: 786  ARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNR-LTLEKEYLEKEIQELQEQRID 844

Query: 366  WKSKLNSERKEVSKLQERIKSLKTSLSDRDHEVRDLKMAVSDAEQKIFPEKAQIKAEILG 425
             K ++ S  KE+  L  + + L+  L + +  +RDL+                  + +  
Sbjct: 845  LKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLE------------------SRLGD 886

Query: 426  LYEEKACLVEQLREWESRGRSLEDELRIIKTQKTELEERIVGEIEQLKA--SIAERDKHI 483
            L +E+  L  QLRE E +   LE ++   + + +EL+ ++    E+L         D+ I
Sbjct: 887  LKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEI 946

Query: 484  ENLNRSLDSLKAERDRLESDVISRDDRMDQMEKHLQQLHMEHTELIKGAEDAHRMVGELR 543
                 SL+ ++AE  R+E +              ++ L   +   I+  E+  + + EL+
Sbjct: 947  PEEELSLEDVQAELQRVEEE--------------IRALEPVNMLAIQEYEEVLKRLDELK 992

Query: 544  LKAKELEEEIEKQRVVILEGAEEKREAIRQ 573
             K  +LEEE +     I E  ++KRE   +
Sbjct: 993  EKRAKLEEERKAILERIEEYEKKKREVFME 1022

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 47.4 bits (113), Expect = 2e-05
 Identities = 45/164 (27%), Positives = 78/164 (47%), Gaps = 8/164 (4%)

Query: 433 LVEQLREWESRGRSLEDELRIIKTQKTELEERIVGEIEQLKASIAERDKHIENLNRSLDS 492
           L E+L E +   +  E+EL  +  +  ELEE    ++E+L+  ++E ++ IE L + L +
Sbjct: 237 LREELEELQEELKEAEEELEELTAELQELEE----KLEELRLEVSELEEEIEELQKELYA 292

Query: 493 LKAERDRLESDVISRDDRMDQMEKHLQQLHMEHTELIKGAEDAHRMVGELRLKAKELEEE 552
           L  E  RLE       +R+  +E+ L++L  +  EL    ++    + EL  K +EL+EE
Sbjct: 293 LANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEE 352

Query: 553 IEKQRVVILEGAEEKREAIRQLCFSLEHYRSGYISLRKAVIGHK 596
           +E          EE    + +L   LE       +LR  V   +
Sbjct: 353 LESLE----AELEELEAELEELESRLEELEEQLETLRSKVAQLE 392

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 47.4 bits (113), Expect = 2e-05
 Identities = 87/438 (19%), Positives = 162/438 (36%), Gaps = 56/438 (12%)

Query: 191 LQRKVNELETELREAKEKLHSQEERIADESMKGAKNEN-PEALFARIVGYEKKLRLANEK 249
           L  ++ ELE +L E KE+L S E  + +   +  + E+  E L  ++     K+     +
Sbjct: 335 LAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQ 394

Query: 250 IHISNEEILRLKIELQKYNSSETNNYLQADFGSPAEINVNMWDAELQEGINGLETPSLDL 309
           I   N EI RL+  L++         LQ +     +        ELQ  +  LE    +L
Sbjct: 395 IASLNNEIERLEARLERLEDRRER--LQQEIEELLKKLEEAELKELQAELEELEEELEEL 452

Query: 310 DNKVKALMEELRITKEKLMLSEAEIASLKQEVE--SNRSEKIQTLQNQLQLAQKDIATWK 367
             +++ L E L   +E+L  +E  + + ++E+     R + ++ LQ  L+   + +    
Sbjct: 453 QEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALL 512

Query: 368 SKLNSERKEVSKLQERIK-------SLKTSLSDR--DHEVRDLKMAVSDAE--------- 409
              +     +  L E I        +++ +L  R     V +L  A              
Sbjct: 513 KNQSGLSGILGVLSELISVDEGYEAAIEAALGGRLQAVVVENLNAAKKAIAFLKQNELGR 572

Query: 410 -----------QKIFPEKAQIKAEILGLYEEKACLVEQLREWESRGRSLEDELRIIKT-- 456
                       +I     +I   I G       LV+   +       L   + ++    
Sbjct: 573 VTFLPLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSYLLGGVLVVDDLD 632

Query: 457 ------QKTELEERIV--------------GEIEQLKASIAERDKHIENLNRSLDSLKAE 496
                 +K     RIV              G   +  +SI ER + IE L   ++ L+ +
Sbjct: 633 NALELAKKLRPGYRIVTLDGDLVRPGGVITGGSAKTNSSILERRREIEELEEKIEELEEK 692

Query: 497 RDRLESDVISRDDRMDQMEKHLQQLHMEHTELIKGAEDAHRMVGELRLKAKELEEEIEKQ 556
              LE  +      ++++E+ L+QL  E  EL +      + +  L  + ++LEE I + 
Sbjct: 693 IAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQL 752

Query: 557 RVVILEGAEEKREAIRQL 574
              + E   E  E   +L
Sbjct: 753 SKELTELEAEIEELEERL 770

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional

 Score = 47.7 bits (114), Expect = 2e-05
 Identities = 74/388 (19%), Positives = 156/388 (40%), Gaps = 51/388 (13%)

Query: 189 QGLQRKVNELETELREAKEKLHSQEERIAD-----ESMKGAKNENPEALFARIVGYEKKL 243
           + L+ +  ELE+EL EA+E +  + E I +     E ++    + P         + ++L
Sbjct: 359 EELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVD-LGNAEDFLEEL 417

Query: 244 RLANEKIHISNEEILRLKIELQKY-NSSETNNYLQADFGSPAEINVNMWDAELQEGINGL 302
           R   +++    E    L+  L+      E    L    G   E    +  +   E I   
Sbjct: 418 REERDELR---EREAELEATLRTARERVEEAEALLEA-GKCPECGQPVEGSPHVETIE-- 471

Query: 303 ETPSLDLDNKVKALMEELRITKEKLMLSEAEIASLKQEVESNRSEKIQTLQNQLQLAQKD 362
                +   +V+ L  EL   +E++   E  +   +  VE+    +I+ L+ + +  ++ 
Sbjct: 472 -----EDRERVEELEAELEDLEEEVEEVEERLERAEDLVEAED--RIERLEERREDLEEL 524

Query: 363 IATWKSKLNSERKEVSKLQERIKSLKTSLSDRDHEVRDLKMAVSDAEQKIFP---EKAQI 419
           IA  +  +  +R+   +L+ER   L+    ++     + +    +A +++     + A++
Sbjct: 525 IAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAEL 584

Query: 420 K---------AEILGLYEEKACLVEQLRE----WESRGRSLEDELRIIKTQKTELEERIV 466
           K           +L    +    +E+LRE             + L   + +K ELE    
Sbjct: 585 KERIESLERIRTLLAAIADAEDEIERLREKREALAELNDERRERLAEKRERKRELEAEFD 644

Query: 467 GE-IEQLKASIAERDKHIENLNRSLDSLKAERDRLESDV----------ISRDDRMDQME 515
              IE+ +      ++++E +   LD L+ ERD L++++              +R + +E
Sbjct: 645 EARIEEAREDKERAEEYLEQVEEKLDELREERDDLQAEIGAVENELEELEELRERREALE 704

Query: 516 KHLQQLHMEHTELIKGAEDAHRMVGELR 543
             ++ L   + E    AE+   M G+LR
Sbjct: 705 NRVEALEALYDE----AEELESMYGDLR 728

Length = 880

>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional

 Score = 47.4 bits (113), Expect = 2e-05
 Identities = 55/284 (19%), Positives = 128/284 (45%), Gaps = 39/284 (13%)

Query: 294 ELQEGINGLETPSLDLDNKVKALMEELRITKEKLMLSEAEIASLKQEVESNRSEKIQTLQ 353
           EL+E I  LE     L+   + L E++R  +E++   + EI  L+++V+    ++++   
Sbjct: 235 ELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVK--ELKELKEKA 292

Query: 354 NQLQLAQKDIATWKSKLNSERKEVSKLQERIKSLKTSLSDRDHEVRDLKMAVSDAEQKIF 413
            +     +    +  +L    K +S+L+E I  ++  + + + +   L+           
Sbjct: 293 EEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLE----------- 341

Query: 414 PEKAQIKAEILGLYEEKACLVEQLREWESRGRSLEDELRIIKTQKTELE-ERIVGEIEQL 472
               ++K ++  L +    L E+   +E   ++ ++EL  +K + T L  E++  E+E+L
Sbjct: 342 ----ELKKKLKELEKRLEELEERHELYE-EAKAKKEELERLKKRLTGLTPEKLEKELEEL 396

Query: 473 KASIAERDKHIENLNRSLDSLKAERDRLESDV----------------ISRDDRMDQMEK 516
           + +  E ++ I  +   +  LK E   L+  +                ++ + R + +E+
Sbjct: 397 EKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCPVCGRELTEEHRKELLEE 456

Query: 517 HLQQLHMEHTELIKGAEDAHRMVGELRLKAKELEEEIEKQRVVI 560
           +  +L     EL +  E       +LR + +ELE+ ++K+  +I
Sbjct: 457 YTAELKRIEKELKEIEE----KERKLRKELRELEKVLKKESELI 496

Length = 880

>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]

 Score = 46.3 bits (110), Expect = 4e-05
 Identities = 77/349 (22%), Positives = 161/349 (46%), Gaps = 28/349 (8%)

Query: 189 QGLQRKVNELETELREAKEKLHSQEERIADESMKGAKNENPEALFARIVGYEKKLRLANE 248
           + +Q ++ ELE EL E + +L   EE I     +  + E+ E + A + G  +K  +  +
Sbjct: 406 EEIQEELEELEKELEELERELEELEEEIKKLEEQINQLESKELMIAELAGAGEKCPVCGQ 465

Query: 249 KIHISNEEILRLKIELQKYNSSETNNYLQADFGSPAEINVNMWDAELQEGINGLETPSLD 308
           ++   +E+ L    EL+     E  +  + +     EI       EL++ +  LE   ++
Sbjct: 466 ELPEEHEKELLELYELELEELEEELSREKEEAELREEIE------ELEKELRELEEELIE 519

Query: 309 LDNKVKALMEELRITKEKLMLSEAEIASLKQEVESNR-SEKIQTLQ-------------N 354
           L    +AL EEL    EKL     E+  LK++++  +  E+++ L+              
Sbjct: 520 LLELEEALKEELEEKLEKLENLLEELEELKEKLQLQQLKEELRQLEDRLQELKELLEELR 579

Query: 355 QLQLAQKDIATWKSKLNSERKEVSKLQERIKSLKTSLSDRDHEVRDLKMAVSDAEQKIFP 414
            L+  ++++   + +L   +K++ +L+ER+  L+  L     E+ + +  + +AE+++  
Sbjct: 580 LLRTRKEELEELRERLKELKKKLKELEERLSQLEELLQSL--ELSEAENELEEAEEELES 637

Query: 415 EKAQIKAEILGLYEEKACLVEQLREWESRGRSLEDELRIIKTQKTELE--ERIVGEIEQL 472
           E  ++  +   L E     +E+L   E +   LE E+R    +    E  E  + E+EQL
Sbjct: 638 ELEKLNLQ-AELEELLQAALEEL---EEKVEELEAEIRRELQRIENEEQLEEKLEELEQL 693

Query: 473 KASIAERDKHIENLNRSLDSLKAERDRLESDVISRDDRMDQMEKHLQQL 521
           +  + +  + +E L + L  ++   + LES     ++   ++EK  + L
Sbjct: 694 EEELEQLREELEELLKKLGEIEQLIEELESRKAELEELKKELEKLEKAL 742

Length = 908

>gnl|CDD|129694 TIGR00606, rad50, rad50

 Score = 46.2 bits (109), Expect = 6e-05
 Identities = 62/264 (23%), Positives = 121/264 (45%), Gaps = 26/264 (9%)

Query: 292 DAELQEGINGLETPSLDLDNKVKALMEELRITKEKLMLSEAEIASLKQEVESNRSEKIQT 351
           +AELQE I+ L++      +K+K+   EL+  KEK       +A  +Q +   + ++I  
Sbjct: 690 EAELQEFISDLQSKLRLAPDKLKSTESELK-KKEKRRDEMLGLAPGRQSIIDLKEKEIPE 748

Query: 352 LQNQLQLAQKDIATWKSKLNSERKEVSKLQERIKSLKTSLSDRDHEVRDLKMAVSDAEQK 411
           L+N+LQ   +DI   K+ +  +   +  +    +S K  L+D    +   +M + D E+K
Sbjct: 749 LRNKLQKVNRDIQRLKNDIEEQETLLGTIMPEEESAKVCLTDVT-IMERFQMELKDVERK 807

Query: 412 IFPEKAQIKAEILGLYEEKACLVEQLREWESRGRSLEDELRIIKTQKTELEERIVGEIEQ 471
           I    AQ  A++ G                S       ++   K +K    + +V +IE 
Sbjct: 808 I----AQQAAKLQG----------------SDLDRTVQQVNQEKQEKQHELDTVVSKIEL 847

Query: 472 LKASIAERDKHIENLNRSLDSLKAERDRLESDVISRDDRMDQMEKHLQQLHMEHTELIKG 531
            +  I ++ + I++L    + LK+E+ ++ +++     R  Q E+ L +L  E   LI+ 
Sbjct: 848 NRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNL----QRRQQFEEQLVELSTEVQSLIRE 903

Query: 532 AEDAHRMVGELRLKAKELEEEIEK 555
            +DA      L    ++ ++E E+
Sbjct: 904 IKDAKEQDSPLETFLEKDQQEKEE 927

All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). Length = 1311

>gnl|CDD|116500 pfam07888, CALCOCO1, Calcium binding and coiled-coil domain (CALCOCO1) like

 Score = 45.8 bits (108), Expect = 6e-05
 Identities = 48/240 (20%), Positives = 105/240 (43%), Gaps = 13/240 (5%)

Query: 348 KIQTLQNQLQLAQKDIATWKSKLNSERKEVSKLQERIKSLKTSLSDRDHEVRDLKMAVSD 407
           K   LQNQL+  Q++      K  +   +VS ++ RI+ L+T+L     +  +L+    +
Sbjct: 137 KATILQNQLEGCQRERNDLMKKFLALEGDVSDMRSRIEQLETALRHSTEKTEELEEQHKE 196

Query: 408 AEQK----------IFPEKAQIKAEILGLYEEKACLVEQLREWESRGRSLEDELRIIKTQ 457
           A+            +  ++A+ +  IL L ++   L ++ +E +      +D    ++  
Sbjct: 197 AQSSSESMSAERNALLAQRAENQQRILELEQDIQTLTQKKQENDRVLEGTQDIEAELERM 256

Query: 458 KTELEERIVGEIEQLKASIAERDKHIENLNRSLDSLKAERDRLESDVISRDDRMDQMEKH 517
           K EL++R+     Q +    ER        +  + L+  ++RLES         +++   
Sbjct: 257 KGELKQRLKKMTIQRRDEETERIDLQLENEQLHEDLRTLQERLESSQQKAGLLGEELASL 316

Query: 518 LQQLHMEHTELIKGAEDAHRM---VGELRLKAKELEEEIEKQRVVILEGAEEKREAIRQL 574
                    EL +   ++ +M   + +L L  KE + +  ++R  + + AE  ++ I++L
Sbjct: 317 GSLRDHTIAELHQSRLESAQMSLQLSQLNLALKEGQSQWAQERETLRQSAEADKDRIQKL 376

Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region. Length = 546

>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]

 Score = 45.5 bits (108), Expect = 7e-05
 Identities = 94/412 (22%), Positives = 175/412 (42%), Gaps = 33/412 (8%)

Query: 189 QGLQRKVNELETELREAKEKLHSQEERIAD-ESMKGAKNENPEALFARIVGYEKKLRLAN 247
           +     + E   EL E KE+L   + R+ + ES++    +  E     +    ++L    
Sbjct: 231 EQEIEALEERLAELEEEKERLEELKARLLEIESLELEALKIREEELRELERLLEELEEKI 290

Query: 248 EKIHISNEEILRLKIELQKYNS--SETNNYLQADFGSPAEIN------------VNMWDA 293
           E++     EI  L+ EL+   +   E    L+        +             +     
Sbjct: 291 ERLEELEREIEELEEELEGLRALLEELEELLEKLKSLEERLEKLEEKLEKLESELEELAE 350

Query: 294 ELQEGINGLETPSLDLDNKVKALMEELRITKEKLMLSEAEIASLKQEVESNRSEKIQTLQ 353
           E  E    LE    +L+ +++ L +EL    E+L   E  I  LK+E+    S  ++ +Q
Sbjct: 351 EKNELAKLLEERLKELEERLEELEKELEKALERLKQLEEAIQELKEELAE-LSAALEEIQ 409

Query: 354 NQLQLAQKDIATWKSKLNSERKEVSKLQERIKSLKTSLSDRDHEVRDLKMAVSDAEQKIF 413
            +L+  +K++   + +L    +E+ KL+E+I  L+ S      E+           Q++ 
Sbjct: 410 EELEELEKELEELERELEELEEEIKKLEEQINQLE-SKELMIAELAGAGEKCPVCGQELP 468

Query: 414 PEKAQIKAEILGLYEEKACLVEQLREWESRGRSLEDELRIIKTQKTELEERIVGEIEQLK 473
            E  +   E+L LYE +   +E+    E     L +E+  ++ +  ELEE ++  +E  +
Sbjct: 469 EEHEK---ELLELYELELEELEEELSREKEEAELREEIEELEKELRELEEELIELLELEE 525

Query: 474 ASIAERDKHIENLNRSLDSLKAERDRLESDVISRDDRMDQMEKHLQQLHMEHTELIK--- 530
           A   E ++ +E L   L+ L+  +++L+   +  +  + Q+E  LQ+L     EL     
Sbjct: 526 ALKEELEEKLEKLENLLEELEELKEKLQLQQLKEE--LRQLEDRLQELKELLEELRLLRT 583

Query: 531 ---GAEDAHRMVGELRLKAKELEE-----EIEKQRVVILEGAEEKREAIRQL 574
                E+    + EL+ K KELEE     E   Q + + E   E  EA  +L
Sbjct: 584 RKEELEELRERLKELKKKLKELEERLSQLEELLQSLELSEAENELEEAEEEL 635

Length = 908

>gnl|CDD|225288 COG2433, COG2433, Uncharacterized conserved protein [Function unknown]

 Score = 44.7 bits (106), Expect = 1e-04
 Identities = 38/224 (16%), Positives = 93/224 (41%), Gaps = 31/224 (13%)

Query: 357 QLAQKDIATWKSKLNSERKEVSKLQERIKSLKTSLSDRDHEVRDLKMAVSDAEQKIFPEK 416
           +  +K  A++ + L +  +++S  +++       +S  D   RD   A   A     P+ 
Sbjct: 302 ETVKKIAASFNAVLYTPDRDLSVEEKQEALRTLKISVSDDHERDALAAAYKAYLAYKPKL 361

Query: 417 AQIKAEI------LGLYEEKACLVEQLREWESRGRSLEDELRIIKTQKTELEERIVGEIE 470
            +++ ++        +   KA ++        RG  L + L  +K ++   E+   G  E
Sbjct: 362 EKVERKLPELGIWKDVERIKALVI--------RGYPLAEALSKVKEEERPREKE--GTEE 411

Query: 471 QLKASIAERDKHIENLNRSLDSLKAERDRLESDVISRDDRMDQMEKHLQQLHMEHTELIK 530
           + +  I   +K I+ L  +++ L+ E   L+         ++++++ +++L  E     +
Sbjct: 412 EERREITVYEKRIKKLEETVERLEEENSELK-------RELEELKREIEKLESELERFRR 464

Query: 531 GAEDAHRMVGELRLKAKELEEEIEKQRVVILEGAEEKREAIRQL 574
              D  R       + +  +  IE+    +    EEK++ + +L
Sbjct: 465 EVRDKVR----KDREIRARDRRIERLEKEL----EEKKKRVEEL 500

Length = 652

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 43.9 bits (104), Expect = 2e-04
 Identities = 65/279 (23%), Positives = 124/279 (44%), Gaps = 50/279 (17%)

Query: 307 LDLDNKVKALMEELRITKEKLMLSEAEIASLKQEVES-----NRSEKIQTLQNQLQLAQK 361
                + +    +L  T+E L   E  +  L++++E       ++E+ Q L+ +L+  + 
Sbjct: 168 SKYKERKEEAERKLERTEENLERLEDLLEELEKQLEKLERQAEKAERYQELKAELRELEL 227

Query: 362 DIATWKSKLNSERKEVSKLQERIKSLKTSLSDRDHEVRDLKMAVSDAEQKIFPEKAQIKA 421
            +   K  L   RKE+ +L+E +  L+        E+ +L+  + +AE++I     ++K+
Sbjct: 228 ALLLAK--LKELRKELEELEEELSRLEE-------ELEELQEELEEAEKEI----EELKS 274

Query: 422 EILGLYEEKACLVEQLREWESRGRSLEDELRIIKTQKTELEERIVGEIEQLKASIAERDK 481
           E+           E+LRE       L++EL  +K +  ELE    GEI  L+  + E + 
Sbjct: 275 EL-----------EELRE---ELEELQEELLELKEEIEELE----GEISLLRERLEELEN 316

Query: 482 HIENLNRSLDSLKAERDRLESDVISRDDRMDQMEKHLQQLHMEHTELIKGAEDAHRMVGE 541
            +E L   L+ LK + + L+ ++  R+  +    + L+QL  E  E  +          E
Sbjct: 317 ELEELEERLEELKEKIEALKEELEERETLL----EELEQLLAELEEAKE----------E 362

Query: 542 LRLKAKELEEEIEKQRVVILEGAEEKREAIRQLCFSLEH 580
           L  K   L EE+E+    + E   E    + ++   LE 
Sbjct: 363 LEEKLSALLEELEELFEALREELAELEAELAEIRNELEE 401

Length = 1163

>gnl|CDD|221952 pfam13166, AAA_13, AAA domain

 Score = 44.2 bits (105), Expect = 2e-04
 Identities = 75/400 (18%), Positives = 162/400 (40%), Gaps = 57/400 (14%)

Query: 192 QRKVNELETELREAKEKLH--SQEERIADESMKGAKNENPEALFARIV-GYEKKLRLANE 248
           + ++ EL+ EL++ +EK+     E    +E ++ AKN+  +  + ++   Y+  L  A +
Sbjct: 94  EAQIEELKKELKKLEEKIEQLEAEIEKKEEELEKAKNKFLDKAWKKLAKKYDSNLSEALK 153

Query: 249 KIHISNEEILRLKIELQKYNSSETNNYLQADFGSPAEIN--VNMWDAELQEGINGLETPS 306
            ++       +L  EL+    + ++        S  E+   +    +  +  +  L    
Sbjct: 154 GLNYKKNFKEKLLKELKSVILNASSLL------SLEELKAKIKTLFSSNKPELALLTLSV 207

Query: 307 LDLDNKVKALMEELRITKEKLMLSEA-EIASLKQEVESNRS---------EKIQT---LQ 353
           +D D      +E+  I ++ ++ S    I+ L   +  N           E+  T    Q
Sbjct: 208 IDFDE-----IEQAEILEKSIIGSSDVPISELINNL-GNSDWVKEGLEYHEEGDTCPFCQ 261

Query: 354 NQLQLAQKDIATWKSKLNSE-RKEVSKLQERIKSLKTSLSDRDHEVRDLKMAVSDAEQKI 412
             +   +K       +L +   +E  +L E+++ L         +  +   ++ D E++ 
Sbjct: 262 QTITEERKA------ELEAHFDEEYQELIEQLEELIDKYESHIEKALEELESILDTEKEN 315

Query: 413 FP---EKAQIKAEILGLYEEKACLVEQLREWESRGRSLEDELRIIKTQKTELEERIVGEI 469
                +  ++KA +         L E L +     + LE++L+   +   ELE  I   I
Sbjct: 316 SEFKLDVEELKALL-------EALEEILEKNL---QKLEEKLKDP-STSIELES-ITDLI 363

Query: 470 EQLKASIAERDKHIENLNRSLDSLKAERDRLESDVISRDDRMDQMEKHLQQLHMEHTELI 529
           E +   I   ++ I   N  +D+LK E+++ +  +      + ++++ +     E   L 
Sbjct: 364 ESINDIIDAINELIREHNEKIDNLKKEKNKAKKKL--WLHLVAELKEDIDAYQKEKKGLE 421

Query: 530 KGAEDAHRMVGELRLKAKELEEEI---EKQRVVILEGAEE 566
           K      + + +L  + K LE+EI   EKQ   I   A+E
Sbjct: 422 KAINSLEKEIKQLEAEIKALEKEIKELEKQLTNIEPTADE 461

This family of domains contain a P-loop motif that is characteristic of the AAA superfamily. Many of the proteins in this family are conjugative transfer proteins. This family includes the PrrC protein that is thought to be the active component of the anticodon nuclease. Length = 713

>gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional

 Score = 44.0 bits (105), Expect = 2e-04
 Identities = 42/172 (24%), Positives = 84/172 (48%), Gaps = 28/172 (16%)

Query: 401 LKMAVSDAEQKIFPEKAQIKAEILGLYEEKACLVEQLREWESRGRSLEDELRIIKTQKTE 460
           +K A  +A++ +  E+A+ +AE +    +K  L+E   E        E ELR  + +  +
Sbjct: 33  IKEAEEEAKRIL--EEAKKEAEAI----KKEALLEAKEEIHKLRNEFEKELRERRNELQK 86

Query: 461 LEERIVGEIEQLKASIAERDKHIENLNRSLDSLKAERDRLESDVISRDDRMDQMEKHLQQ 520
           LE+R++ + E L       D+ +E L +  + L+ +   LE     +   +++ E+ L++
Sbjct: 87  LEKRLLQKEENL-------DRKLELLEKREEELEKKEKELE----QKQQELEKKEEELEE 135

Query: 521 LHMEHT---ELIKG--AEDAHRMVGELRLKAKELEEEIEKQRVVILEGAEEK 567
           L  E     E I G  AE+A  ++       +++EEE   +  V+++  EE+
Sbjct: 136 LIEEQLQELERISGLTAEEAKEIL------LEKVEEEARHEAAVLIKEIEEE 181

Length = 520

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 43.5 bits (103), Expect = 3e-04
 Identities = 39/159 (24%), Positives = 71/159 (44%), Gaps = 11/159 (6%)

Query: 421 AEILGLYEEKACLVEQLREWESRGRSLEDELRIIKTQKTELEE---------RIVGEIEQ 471
           A +    E K     +L   E     LED L  ++ Q  +LE           +  E+ +
Sbjct: 165 AGVSKYKERKEEAERKLERTEENLERLEDLLEELEKQLEKLERQAEKAERYQELKAELRE 224

Query: 472 LKASIAERDKHIENLNRSLDSLKAERDRLESDVISRDDRMDQMEKHLQQLHMEHTELIKG 531
           L+ ++      ++ L + L+ L+ E  RLE ++    + +++ EK +++L  E  EL + 
Sbjct: 225 LELALLLAK--LKELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREE 282

Query: 532 AEDAHRMVGELRLKAKELEEEIEKQRVVILEGAEEKREA 570
            E+    + EL+ + +ELE EI   R  + E   E  E 
Sbjct: 283 LEELQEELLELKEEIEELEGEISLLRERLEELENELEEL 321

Length = 1163

>gnl|CDD|218681 pfam05667, DUF812, Protein of unknown function (DUF812)

 Score = 43.2 bits (102), Expect = 3e-04
 Identities = 62/275 (22%), Positives = 123/275 (44%), Gaps = 32/275 (11%)

Query: 294 ELQEGINGLETPSLDLDNKVKALMEELRITKEKLMLSEAEIASLKQEVESNR--SEKIQT 351
            LQE I+ LE+   ++ +++KAL  +++   E+L     E   L++E +  +   E +  
Sbjct: 274 ALQEQIDELESSIEEVLSEIKALASKIKQVNEELTTVRQENEELEEEYKIKKRTVELLPD 333

Query: 352 LQNQLQLAQKDIATWKSKLNSERKEVSKLQERIKSLKTSLSDRDHEVRDLKMAVSDAEQK 411
            +N +   Q  +     +L        +L ++ ++ +T L D   E R LK    + E +
Sbjct: 334 AENNVAKLQALVVASSERL-------LELAQQWEAHRTPLID---EYRSLKEKNRNKEDE 383

Query: 412 IFPEKAQIKAEILGLYEEKACLVEQLREWESRGRSLEDELR-----IIKTQKTELEERIV 466
              +  +IK     L  +   L  +L+  E   + L DE       + ++  T     I+
Sbjct: 384 TQRQLDEIK----KLRNKIEELESELQTKEQLYKQLLDEYENAPKSVSRSAYTRRILEII 439

Query: 467 GEIEQLKASIAERDKHIENLNRSLDSLKAERDR---LESDVISRDDRMDQ----MEKHLQ 519
             I++ K  I +      +L + ++++  + DR   +  +++ RD + D+      K L 
Sbjct: 440 KNIKKQKEDIDKILSDTRSLQKEINNITGKLDRTFTVTDELLFRDAKKDEHAKKAYKLLA 499

Query: 520 QLHMEHTELIKGAEDAHRMVGELRLKAKELEEEIE 554
            LH   +ELI+  E+   +  E+R    +LEE+IE
Sbjct: 500 ALHENCSELIETVEETGNIKREIR----DLEEQIE 530

This family consists of several eukaryotic proteins of unknown function. Length = 536

>gnl|CDD|224495 COG1579, COG1579, Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

 Score = 41.6 bits (98), Expect = 6e-04
 Identities = 35/136 (25%), Positives = 69/136 (50%), Gaps = 13/136 (9%)

Query: 302 LETPSLDLDNKVKALMEELRITKEKLMLSEAEIASLKQEVESNRSEKIQTLQNQLQLAQK 361
           LE    DL+N+V  L  E++  +E++  +E +++++K E E             L     
Sbjct: 50  LEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAVKDERE----------LRALN---I 96

Query: 362 DIATWKSKLNSERKEVSKLQERIKSLKTSLSDRDHEVRDLKMAVSDAEQKIFPEKAQIKA 421
           +I   K ++NS   E+++L E I+ L+  + D    +  L+  +++AE ++  E A+I+ 
Sbjct: 97  EIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLAEAEARLEEEVAEIRE 156

Query: 422 EILGLYEEKACLVEQL 437
           E   L  ++  L E+L
Sbjct: 157 EGQELSSKREELKEKL 172

Length = 239

>gnl|CDD|100796 PRK01156, PRK01156, chromosome segregation protein; Provisional

 Score = 41.4 bits (97), Expect = 0.001
 Identities = 56/287 (19%), Positives = 109/287 (37%), Gaps = 37/287 (12%)

Query: 297 EGINGLETPSLDLDNKVKALMEELRITKEKLMLSEAEIASLKQEVESNRSEKIQTLQNQL 356
           E  + LE    +++ +VK + E++            ++   K+ +ES    K     N++
Sbjct: 476 EKKSRLEEKIREIEIEVKDIDEKIV-----------DLKKRKEYLESEEINKSINEYNKI 524

Query: 357 QLAQKDIATWKSKLNSERKEVSK---LQERIKSLKTSLSDRDHEVRDLKMAVS-----DA 408
           + A+ D+   K K+N  + +  K   ++ R KSLK    D         +AV      + 
Sbjct: 525 ESARADLEDIKIKINELKDKHDKYEEIKNRYKSLKLEDLDSKRTSWLNALAVISLIDIET 584

Query: 409 EQKIFPE-KAQIKAEILGLYEEKACLVEQLREWESRGRSLEDELRIIKTQKTELE----- 462
            +    E K Q+      L E +    +     +   R +E+E   +  +  E++     
Sbjct: 585 NRSRSNEIKKQLNDLESRLQEIEIGFPDDKSYIDKSIREIENEANNLNNKYNEIQENKIL 644

Query: 463 -ERIVGEIEQLKASIAERDKHIENLNRSLDSLKAERDRLESDVISRDDRMDQMEKHLQQL 521
            E++ G+I+  K  IAE D  I +L             + S +   +D + +  K L   
Sbjct: 645 IEKLRGKIDNYKKQIAEIDSIIPDLK-----------EITSRINDIEDNLKKSRKALDDA 693

Query: 522 HMEHTELIKGAEDAHRMVGELRLKAKELEEEIEKQRVVILEGAEEKR 568
                 L    E     + EL  +  ++ E +E  + +     + KR
Sbjct: 694 KANRARLESTIEILRTRINELSDRINDINETLESMKKIKKAIGDLKR 740

Length = 895

>gnl|CDD|227512 COG5185, HEC1, Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]

 Score = 40.7 bits (95), Expect = 0.002
 Identities = 50/281 (17%), Positives = 123/281 (43%), Gaps = 34/281 (12%)

Query: 295 LQEGINGLETPSLDLDNKVKALMEELRITKEKLMLSEAEIASLKQEVESNRSEKIQTLQN 354
            +  +N ++  S +   K++ L  E+ + +E++   ++ I  L +++       I T Q 
Sbjct: 314 YENYVNAMKQKSQEWPGKLEKLKSEIELKEEEIKALQSNIDELHKQLRKQG---ISTEQF 370

Query: 355 QLQLAQKD--------IATWKSKLNSERKEVSKL-QERIKSLKTSLSDRDHEVRDLKM-- 403
           +L   +++        I     KL    K      Q   KSL+ +L   D  ++++    
Sbjct: 371 ELMNQEREKLTRELDKINIQSDKLTKSVKSRKLEAQGIFKSLEKTLRQYDSLIQNITRSR 430

Query: 404 -----AVSDAEQKIFPEKAQIKAEILGLYEEKACLVEQLREWESRGRSLEDELRIIKTQK 458
                 V+D+  KI  E  Q+  +  G+ E     + +L         +++ ++  + + 
Sbjct: 431 SQIGHNVNDSSLKINIE--QLFPKGSGINESIKKSILELN------DEIQERIKTEENKS 482

Query: 459 TELEERIVGEIEQLKASIAERDKHIEN-LNRSLDSLKAERDRLESDVISRDDRMDQMEKH 517
             LEE I   ++     + +  + +E  L+ +    +  ++  E +++++   ++++EK 
Sbjct: 483 ITLEEDI-KNLKHDINELTQILEKLELELSEANSKFELSKEENERELVAQRIEIEKLEKE 541

Query: 518 LQQLHME-HTELIKGAEDAHRMVGELRLKAKELEEEIEKQR 557
           L  L++   T ++    DA ++V    +K  EL+ ++ ++R
Sbjct: 542 LNDLNLLSKTSIL----DAEQLVQSTEIKLDELKVDLNRKR 578

Length = 622

>gnl|CDD|218636 pfam05557, MAD, Mitotic checkpoint protein

 Score = 40.7 bits (95), Expect = 0.002
 Identities = 82/391 (20%), Positives = 148/391 (37%), Gaps = 28/391 (7%)

Query: 189 QGLQRKVNELETELREAKEKLHSQEERIADE-SMKGAKNENP--EALFARIVGYEKKLRL 245
              Q    +   +++  +E+L   E+      SMK    + P  E   A +    +KLR 
Sbjct: 219 TSEQASSADNSVKIKHLEEELKRYEQDAEVVKSMKEQLLQIPELERELAALREENRKLRS 278

Query: 246 ANEKIHISNEEILRLKIELQKYNSSETNNYLQADFGSPAEINVNMWDAELQEGINGLETP 305
             E   +  EE+  L+  L+++                 E  +  W + LQ+    L TP
Sbjct: 279 MKEDNELLKEELEDLQSRLERFEKMREKLADLELEKEKLENELKSWKSLLQDIGLNLRTP 338

Query: 306 SLDLDNKVKALMEELRITKEKLMLSEAEIASLKQEVESNRSEKIQTLQNQLQLAQKDIAT 365
             DL  ++  L  E    KEK     +    L+          +Q LQ + Q A  +I  
Sbjct: 339 D-DLSRRIVVLQNEELQLKEKNGSISSSAKQLE--------TTLQQLQLERQKAVSEILE 389

Query: 366 WKSKLNSERKEVSKLQERIKSLKTSLSDRDHEV---RDLKMAVSDAEQKIFPEKAQIKAE 422
            K KL + +  V +LQ R  +L T   D    +    D ++  +    ++     + +  
Sbjct: 390 LKKKLEALKALVRRLQRR-LTLVTKERDGLRAILNSYDKELTETSVSGQLMKRLEEAEDL 448

Query: 423 ILGLYEEKACLVEQLREWESRGRSLEDELRIIKTQKTELEERIVGE---IEQLKASIAER 479
           +  +    A +  QL E E      +D    ++T+   L+E++V     +  +K +    
Sbjct: 449 VQKVQSHLAKMENQLSELEEDVGQQKDRNNTLETEIKLLKEQLVSNERLLSFVKEATNAL 508

Query: 480 DKHIENLNRSLDSLKAERDRLESDVISRDDRMDQMEKHLQQLHMEHTELIKGAEDAHRMV 539
              IE L R  D L+ E+  LE  +     + D      + LHM      +  + A + +
Sbjct: 509 RLKIETLERERDRLRQEKSLLEMKLEHLCLQGDYNASRTKVLHMSLNPASEAEQIAKQTI 568

Query: 540 GELRLKAKELEEEIE--KQRVVILEGAEEKR 568
                  + L+ E E  K+R+  LE  + + 
Sbjct: 569 -------EALQAECEKLKERLQALEEGKSQP 592

This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in yeast and higher eukaryotes. In S.cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated. Length = 722

>gnl|CDD|221432 pfam12128, DUF3584, Protein of unknown function (DUF3584)

 Score = 40.1 bits (94), Expect = 0.003
 Identities = 73/413 (17%), Positives = 146/413 (35%), Gaps = 50/413 (12%)

Query: 187 DDQGLQRKVNELETELREAKEKLHSQEERI--ADESMKGAKNENPEALFA---RIVGYEK 241
            +  L+   +EL  EL  A  KL +    +   ++     ++ + E L A   ++     
Sbjct: 300 LEDQLKEARDELNQELSAANAKLAADRSELELLEDQKGAFEDADIEQLQADLDQLPSIRS 359

Query: 242 KLRLANEKIH--ISNEEILRLKIELQKYNSSETNNYLQADFGSPAEINVNMWDAELQEGI 299
           +L     ++       + ++ K E  K    E               N     A  +E  
Sbjct: 360 ELEEVEARLDALTGKHQDVQRKYERLKQKIKEQLERDLEK-------NNERLAAIREEKD 412

Query: 300 NGLETPSLDLDNKVKALMEELRITKEKLMLSEAEIASLKQEVESNRSEKIQTLQNQLQLA 359
                   DL      L ++L   K +    E E+      ++        T +   QL 
Sbjct: 413 RQKAAIEEDLQALESQLRQQLEAGKLEFNEEEYELELRLGRLKQRLDSATATPEELEQLE 472

Query: 360 QKDIATWK--SKLNSERKEVSKLQERIKSLKT-------SLSDRDHEVRDLKMAVSDAEQ 410
             D A  K   +       V +LQ  ++ L+        +L   +  +  L+ A+ + E 
Sbjct: 473 INDEALEKAQEEQEQAEANVEQLQSELRQLRKRRDEALEALQRAERRLLQLRQALDELEL 532

Query: 411 KIFPEKAQIKAEILGLYEEKACLVEQLR----EWESR-GRSLEDELRIIKTQKTELE-ER 464
           ++ P+                 L+  LR     WE   G+ +  EL     ++T+L+ + 
Sbjct: 533 QLSPQAGS--------------LLHFLRNEAPGWEESIGKVISPEL----LERTDLDPQL 574

Query: 465 IVGEIEQLKASIAERDKHIE--NLNRSLDSLKAERDRLESDVISRDDRMDQMEKHLQQLH 522
           + G        ++   + ++  +   +   L+    + E  + S   +  Q E+ L Q +
Sbjct: 575 VEGSDSDTLYGVSLDLQRLDVPDYAANETELRERLQQAEEALQSAVAKQKQAEEQLVQAN 634

Query: 523 MEHTELIKGAEDAHRMVGELRLKAKELEEEIEKQRV-VILEGAEEKREAIRQL 574
            E  E  +   +A   + + RL  + L+ E +  +  + L  AE K++A  QL
Sbjct: 635 AELEEQKRAEAEARTALKQARLDLQRLQNEQQSLKDKLELAIAERKQQAETQL 687

This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication. Length = 1198

>gnl|CDD|214661 smart00435, TOPEUc, DNA Topoisomerase I (eukaryota)

 Score = 40.0 bits (94), Expect = 0.003
 Identities = 25/87 (28%), Positives = 50/87 (57%), Gaps = 5/87 (5%)

Query: 309 LDNKVKALMEELRITKEKLMLSEAEIASLKQEVESNRSEKIQTLQNQLQLAQKDIATWKS 368
           L  K+KAL  +L+  K+ ++L E  I+ LK++++S    K +    +L    K+    K 
Sbjct: 282 LQEKIKALKYQLKRLKKMILLFE-MISDLKRKLKS----KFERDNEKLDAEVKEKKKEKK 336

Query: 369 KLNSERKEVSKLQERIKSLKTSLSDRD 395
           K   ++K++ +L+ERI+ L+   +D++
Sbjct: 337 KEEKKKKQIERLEERIEKLEVQATDKE 363

DNA Topoisomerase I (eukaryota), DNA topoisomerase V, Vaccina virus topoisomerase, Variola virus topoisomerase, Shope fibroma virus topoisomeras. Length = 391

>gnl|CDD|113356 pfam04582, Reo_sigmaC, Reovirus sigma C capsid protein

 Score = 39.5 bits (92), Expect = 0.003
 Identities = 26/88 (29%), Positives = 39/88 (44%), Gaps = 1/88 (1%)

Query: 325 EKLMLSEAEIASLKQEVESNRSEKIQTLQNQLQLAQKDIATWKSKLNSERKEVSKLQERI 384
           E+L   E+  ASL + V S  S ++  L   LQ     +   K+ LN     V  LQ  +
Sbjct: 35  ERLTNLESATASLSESV-STISSRLSDLSADLQDMTTSLDDAKATLNGLITTVQALQTSV 93

Query: 385 KSLKTSLSDRDHEVRDLKMAVSDAEQKI 412
            SL + L+D    V     A+SD +  +
Sbjct: 94  DSLSSELADLSLTVSAHDAAISDLQTTV 121

Length = 326

>gnl|CDD|221432 pfam12128, DUF3584, Protein of unknown function (DUF3584)

 Score = 40.1 bits (94), Expect = 0.004
 Identities = 44/262 (16%), Positives = 89/262 (33%), Gaps = 28/262 (10%)

Query: 291 WDAELQEGINGLETPSLDLDNKVKALMEELRITKEKLMLSEAEIASLKQEVESNRSEKIQ 350
                      L T    L      L +EL     KL    +E+  L+ +  +     I+
Sbjct: 286 RQEAKNRLRQQLRTLEDQLKEARDELNQELSAANAKLAADRSELELLEDQKGAFEDADIE 345

Query: 351 TLQNQLQLAQKDIATWKSKLNSERKEVSKLQERIKSLKTSLSDRDHEVRDLKMAVSDAEQ 410
            LQ  L            +L S R E+ +++ R+ +L     D   +   LK  + +  +
Sbjct: 346 QLQADL-----------DQLPSIRSELEEVEARLDALTGKHQDVQRKYERLKQKIKEQLE 394

Query: 411 KIFPEKAQIKAEILGLYEEKACLVEQLREWESRGRS-----LEDELRIIKTQKTELEERI 465
           +   +  +    +  + EEK      + E      S     LE        ++ ELE R+
Sbjct: 395 R---DLEKNNERLAAIREEKDRQKAAIEEDLQALESQLRQQLEAGKLEFNEEEYELELRL 451

Query: 466 V---------GEIEQLKASIAERDKHIENLNRSLDSLKAERDRLESDVISRDDRMDQMEK 516
                         +    +   D+ +E      +  +A  ++L+S++     R D+  +
Sbjct: 452 GRLKQRLDSATATPEELEQLEINDEALEKAQEEQEQAEANVEQLQSELRQLRKRRDEALE 511

Query: 517 HLQQLHMEHTELIKGAEDAHRM 538
            LQ+      +L +  ++    
Sbjct: 512 ALQRAERRLLQLRQALDELELQ 533

This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication. Length = 1198

>gnl|CDD|224259 COG1340, COG1340, Uncharacterized archaeal coiled-coil protein [Function unknown]

 Score = 39.3 bits (92), Expect = 0.004
 Identities = 53/235 (22%), Positives = 101/235 (42%), Gaps = 18/235 (7%)

Query: 359 AQKDIATWKSKLNSERKEVSKLQERIKSLKTSLSDRDHEVRDLKMAVSDAEQKIFPEKAQ 418
            +K+ +    K +    +V +L+E+ + L+    + + EV++LK    +   +I  +  +
Sbjct: 32  LRKEASELAEKRDELNAKVRELREKAQELREERDEINEEVQELK----EKRDEINAKLQE 87

Query: 419 IKAEILGLYEEKACLVEQLREWESRGRSLEDELRIIKTQKT--ELEERIVGEIEQLKASI 476
           ++ E   L E++       R  +S  R +E   +  +T     E E  +V +I++L+  +
Sbjct: 88  LRKEYRELKEKRNEFNLGGRSIKSLEREIERLEKKQQTSVLTPEEERELVQKIKELRKEL 147

Query: 477 AERDKHIENLNRSLDSLKAERDRLESDVISRDDRMDQMEKHLQQLHMEHTELIKGAEDAH 536
            +  K     N  L  LKAE D L+       +++ ++    Q+ H E  +L + A+   
Sbjct: 148 EDAKK-ALEENEKLKELKAEIDELKKKAREIHEKIQELANEAQEYHEEMIKLFEEAD--- 203

Query: 537 RMVGELRLKAKELEEEIEKQRVVILEGAEEKREAIRQLCFSLEHYRSGYISLRKA 591
               ELR +A EL EE  +      +  +E  E  R L   L        +LR  
Sbjct: 204 ----ELRKEADELHEEFVELS----KKIDELHEEFRNLQNELRELEKKIKALRAK 250

Length = 294

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	604
PF07765	74	KIP1: KIP1-like protein; InterPro: IPR011684 This	100.0
PRK02224	880	chromosome segregation protein; Provisional	99.35
TIGR02168	1179	SMC_prok_B chromosome segregation protein SMC, com	99.31
TIGR02169	1164	SMC_prok_A chromosome segregation protein SMC, pri	99.28
PRK02224	880	chromosome segregation protein; Provisional	99.24
TIGR02169	1164	SMC_prok_A chromosome segregation protein SMC, pri	99.24
PRK03918	880	chromosome segregation protein; Provisional	99.21
TIGR02168	1179	SMC_prok_B chromosome segregation protein SMC, com	99.21
PRK03918	880	chromosome segregation protein; Provisional	99.15
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	99.1
KOG0161	1930	consensus Myosin class II heavy chain [Cytoskeleto	99.07
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	99.05
KOG0161	1930	consensus Myosin class II heavy chain [Cytoskeleto	99.04
KOG4674	1822	consensus Uncharacterized conserved coiled-coil pr	99.02
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	99.02
PF10174	775	Cast: RIM-binding protein of the cytomatrix active	98.99
KOG4674	1822	consensus Uncharacterized conserved coiled-coil pr	98.93
PRK01156	895	chromosome segregation protein; Provisional	98.89
PRK01156	895	chromosome segregation protein; Provisional	98.89
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	98.89
KOG0971	1243	consensus Microtubule-associated protein dynactin	98.88
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	98.87
PF10174	775	Cast: RIM-binding protein of the cytomatrix active	98.86
PF00261	237	Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop	98.85
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	98.85
PF00261	237	Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop	98.82
PF00038	312	Filament: Intermediate filament protein; InterPro:	98.79
KOG4643	1195	consensus Uncharacterized coiled-coil protein [Fun	98.75
PF05701	522	WEMBL: Weak chloroplast movement under blue light;	98.74
KOG0964	1200	consensus Structural maintenance of chromosome pro	98.7
KOG4643	1195	consensus Uncharacterized coiled-coil protein [Fun	98.68
KOG0996	1293	consensus Structural maintenance of chromosome pro	98.67
KOG0933	1174	consensus Structural maintenance of chromosome pro	98.65
PHA02562	562	46 endonuclease subunit; Provisional	98.64
PF05701	522	WEMBL: Weak chloroplast movement under blue light;	98.62
KOG0976	1265	consensus Rho/Rac1-interacting serine/threonine ki	98.61
PF00038	312	Filament: Intermediate filament protein; InterPro:	98.56
KOG0250	1074	consensus DNA repair protein RAD18 (SMC family pro	98.53
KOG0977	546	consensus Nuclear envelope protein lamin, intermed	98.51
KOG0996	1293	consensus Structural maintenance of chromosome pro	98.49
KOG0933	1174	consensus Structural maintenance of chromosome pro	98.49
KOG0964	1200	consensus Structural maintenance of chromosome pro	98.48
PF12128	1201	DUF3584: Protein of unknown function (DUF3584); In	98.45
KOG0977	546	consensus Nuclear envelope protein lamin, intermed	98.44
KOG0250	1074	consensus DNA repair protein RAD18 (SMC family pro	98.42
KOG0971	1243	consensus Microtubule-associated protein dynactin	98.36
PRK04778	569	septation ring formation regulator EzrA; Provision	98.36
PHA02562	562	46 endonuclease subunit; Provisional	98.32
PRK11637	428	AmiB activator; Provisional	98.32
PF09730	717	BicD: Microtubule-associated protein Bicaudal-D; I	98.32
PF12128	1201	DUF3584: Protein of unknown function (DUF3584); In	98.31
PF14915	305	CCDC144C: CCDC144C protein coiled-coil region	98.31
PF05483	786	SCP-1: Synaptonemal complex protein 1 (SCP-1); Int	98.3
PRK11637	428	AmiB activator; Provisional	98.29
COG1340	294	Uncharacterized archaeal coiled-coil protein [Func	98.26
PF15070	617	GOLGA2L5: Putative golgin subfamily A member 2-lik	98.25
KOG0976	1265	consensus Rho/Rac1-interacting serine/threonine ki	98.25
PF15070	617	GOLGA2L5: Putative golgin subfamily A member 2-lik	98.24
KOG4673	961	consensus Transcription factor TMF, TATA element m	98.22
COG1340	294	Uncharacterized archaeal coiled-coil protein [Func	98.15
PF06160	560	EzrA: Septation ring formation regulator, EzrA ; I	98.1
PRK04778	569	septation ring formation regulator EzrA; Provision	98.1
PRK04863	1486	mukB cell division protein MukB; Provisional	98.09
PRK04863	1486	mukB cell division protein MukB; Provisional	98.06
COG4942	420	Membrane-bound metallopeptidase [Cell division and	98.04
KOG0995	581	consensus Centromere-associated protein HEC1 [Cell	98.03
KOG0963	629	consensus Transcription factor/CCAAT displacement	98.03
COG5185	622	HEC1 Protein involved in chromosome segregation, i	97.99
PF01576	859	Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu	97.95
PF09726	697	Macoilin: Transmembrane protein; InterPro: IPR0191	97.9
KOG1029	1118	consensus Endocytic adaptor protein intersectin [S	97.9
KOG0963	629	consensus Transcription factor/CCAAT displacement	97.9
PF01576	859	Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu	97.86
COG1579	239	Zn-ribbon protein, possibly nucleic acid-binding [	97.84
KOG0018	1141	consensus Structural maintenance of chromosome pro	97.83
PF06160	560	EzrA: Septation ring formation regulator, EzrA ; I	97.83
KOG0612	1317	consensus Rho-associated, coiled-coil containing p	97.82
COG4942	420	Membrane-bound metallopeptidase [Cell division and	97.77
PF05667	594	DUF812: Protein of unknown function (DUF812); Inte	97.74
PF09726	697	Macoilin: Transmembrane protein; InterPro: IPR0191	97.73
PF14662	193	CCDC155: Coiled-coil region of CCDC155	97.73
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	97.73
COG0419	908	SbcC ATPase involved in DNA repair [DNA replicatio	97.72
PF05667	594	DUF812: Protein of unknown function (DUF812); Inte	97.71
KOG0995	581	consensus Centromere-associated protein HEC1 [Cell	97.68
PF05911	769	DUF869: Plant protein of unknown function (DUF869)	97.68
KOG0612	1317	consensus Rho-associated, coiled-coil containing p	97.66
PF14662	193	CCDC155: Coiled-coil region of CCDC155	97.65
COG0419	908	SbcC ATPase involved in DNA repair [DNA replicatio	97.64
TIGR03185	650	DNA_S_dndD DNA sulfur modification protein DndD. T	97.64
KOG4673	961	consensus Transcription factor TMF, TATA element m	97.63
KOG0018	1141	consensus Structural maintenance of chromosome pro	97.61
TIGR03185	650	DNA_S_dndD DNA sulfur modification protein DndD. T	97.6
KOG0980	980	consensus Actin-binding protein SLA2/Huntingtin-in	97.55
PF09755	310	DUF2046: Uncharacterized conserved protein H4 (DUF	97.53
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	97.5
KOG0994	1758	consensus Extracellular matrix glycoprotein Lamini	97.49
PF05483	786	SCP-1: Synaptonemal complex protein 1 (SCP-1); Int	97.47
TIGR02680	1353	conserved hypothetical protein TIGR02680. Members	97.47
KOG0999	772	consensus Microtubule-associated protein Bicaudal-	97.46
PRK09039	343	hypothetical protein; Validated	97.46
COG4372	499	Uncharacterized protein conserved in bacteria with	97.46
COG3883	265	Uncharacterized protein conserved in bacteria [Fun	97.44
KOG1029	1118	consensus Endocytic adaptor protein intersectin [S	97.43
COG1579	239	Zn-ribbon protein, possibly nucleic acid-binding [	97.4
KOG0994	1758	consensus Extracellular matrix glycoprotein Lamini	97.39
PF05557	722	MAD: Mitotic checkpoint protein; InterPro: IPR0086	97.39
PF12718	143	Tropomyosin_1: Tropomyosin like; InterPro: IPR0005	97.38
PF09787	511	Golgin_A5: Golgin subfamily A member 5; InterPro:	97.37
PF05622	713	HOOK: HOOK protein; InterPro: IPR008636 This famil	97.34
PF05557	722	MAD: Mitotic checkpoint protein; InterPro: IPR0086	97.25
PF15619	194	Lebercilin: Ciliary protein causing Leber congenit	97.19
KOG0962	1294	consensus DNA repair protein RAD50, ABC-type ATPas	97.17
PF09730	717	BicD: Microtubule-associated protein Bicaudal-D; I	97.11
COG4372	499	Uncharacterized protein conserved in bacteria with	97.09
PRK11281	1113	hypothetical protein; Provisional	97.08
PRK10929	1109	putative mechanosensitive channel protein; Provisi	97.07
PF04849	306	HAP1_N: HAP1 N-terminal conserved region; InterPro	96.99
PF10473	140	CENP-F_leu_zip: Leucine-rich repeats of kinetochor	96.98
PF15619	194	Lebercilin: Ciliary protein causing Leber congenit	96.94
PF05622	713	HOOK: HOOK protein; InterPro: IPR008636 This famil	96.93
COG3883	265	Uncharacterized protein conserved in bacteria [Fun	96.92
KOG2129	552	consensus Uncharacterized conserved protein H4 [Fu	96.9
KOG2991	330	consensus Splicing regulator [RNA processing and m	96.8
PF08317	325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	96.79
PF13851	201	GAS: Growth-arrest specific micro-tubule binding	96.75
PF04849	306	HAP1_N: HAP1 N-terminal conserved region; InterPro	96.73
PF13514	1111	AAA_27: AAA domain	96.7
PF10473	140	CENP-F_leu_zip: Leucine-rich repeats of kinetochor	96.64
PF08317	325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	96.62
PF09728	309	Taxilin: Myosin-like coiled-coil protein; InterPro	96.57
TIGR02680	1353	conserved hypothetical protein TIGR02680. Members	96.56
PF07926	132	TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro:	96.54
KOG0999	772	consensus Microtubule-associated protein Bicaudal-	96.5
TIGR03007	498	pepcterm_ChnLen polysaccharide chain length determ	96.49
KOG0978	698	consensus E3 ubiquitin ligase involved in syntaxin	96.46
KOG0980	980	consensus Actin-binding protein SLA2/Huntingtin-in	96.42
KOG1003	205	consensus Actin filament-coating protein tropomyos	96.38
KOG1003	205	consensus Actin filament-coating protein tropomyos	96.36
KOG4593	716	consensus Mitotic checkpoint protein MAD1 [Cell cy	96.3
PF09789	319	DUF2353: Uncharacterized coiled-coil protein (DUF2	96.3
PF13851	201	GAS: Growth-arrest specific micro-tubule binding	96.24
PF09787	511	Golgin_A5: Golgin subfamily A member 5; InterPro:	96.16
smart00787	312	Spc7 Spc7 kinetochore protein. This domain is foun	96.13
PF09789	319	DUF2353: Uncharacterized coiled-coil protein (DUF2	96.1
PF15254	861	CCDC14: Coiled-coil domain-containing protein 14	96.02
PF09755	310	DUF2046: Uncharacterized conserved protein H4 (DUF	96.01
KOG4593	716	consensus Mitotic checkpoint protein MAD1 [Cell cy	96.0
TIGR01005	754	eps_transp_fam exopolysaccharide transport protein	95.96
PF10146	230	zf-C4H2: Zinc finger-containing protein ; InterPro	95.96
TIGR01843	423	type_I_hlyD type I secretion membrane fusion prote	95.94
PF05911	769	DUF869: Plant protein of unknown function (DUF869)	95.93
TIGR01005	754	eps_transp_fam exopolysaccharide transport protein	95.91
KOG4809	654	consensus Rab6 GTPase-interacting protein involved	95.9
TIGR03007	498	pepcterm_ChnLen polysaccharide chain length determ	95.84
PF13870	177	DUF4201: Domain of unknown function (DUF4201)	95.78
KOG0979	1072	consensus Structural maintenance of chromosome pro	95.77
PF05010	207	TACC: Transforming acidic coiled-coil-containing p	95.77
PF07926	132	TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro:	95.64
PRK10246	1047	exonuclease subunit SbcC; Provisional	95.63
PRK11281	1113	hypothetical protein; Provisional	95.57
PF12325	120	TMF_TATA_bd: TATA element modulatory factor 1 TATA	95.46
KOG0962	1294	consensus DNA repair protein RAD50, ABC-type ATPas	95.39
KOG4677	554	consensus Golgi integral membrane protein [Intrace	95.32
PF09728	309	Taxilin: Myosin-like coiled-coil protein; InterPro	95.25
smart00787	312	Spc7 Spc7 kinetochore protein. This domain is foun	95.25
PF05010	207	TACC: Transforming acidic coiled-coil-containing p	95.25
PRK10246	1047	exonuclease subunit SbcC; Provisional	95.19
PRK10929	1109	putative mechanosensitive channel protein; Provisi	95.15
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	95.08
TIGR00634	563	recN DNA repair protein RecN. All proteins in this	95.03
KOG1899	861	consensus LAR transmembrane tyrosine phosphatase-i	94.95
TIGR03017	444	EpsF chain length determinant protein EpsF. Sequen	94.84
KOG0979	1072	consensus Structural maintenance of chromosome pro	94.84
COG4477	570	EzrA Negative regulator of septation ring formatio	94.74
KOG0978	698	consensus E3 ubiquitin ligase involved in syntaxin	94.69
PF10186	302	Atg14: UV radiation resistance protein and autopha	94.6
PF12795	240	MscS_porin: Mechanosensitive ion channel porin dom	94.53
TIGR01000	457	bacteriocin_acc bacteriocin secretion accessory pr	94.48
TIGR00634	563	recN DNA repair protein RecN. All proteins in this	94.47
PLN03229	762	acetyl-coenzyme A carboxylase carboxyl transferase	94.46
PF06008	264	Laminin_I: Laminin Domain I; InterPro: IPR009254 L	94.4
PF15397	258	DUF4618: Domain of unknown function (DUF4618)	94.39
PF13870	177	DUF4201: Domain of unknown function (DUF4201)	94.39
PF12325	120	TMF_TATA_bd: TATA element modulatory factor 1 TATA	94.39
TIGR03017	444	EpsF chain length determinant protein EpsF. Sequen	94.23
KOG1937	521	consensus Uncharacterized conserved protein [Funct	94.23
TIGR01000	457	bacteriocin_acc bacteriocin secretion accessory pr	94.21
PF06818	202	Fez1: Fez1; InterPro: IPR009638 This family repres	94.2
PF07111	739	HCR: Alpha helical coiled-coil rod protein (HCR);	94.03
PRK10869	553	recombination and repair protein; Provisional	93.95
COG4477	570	EzrA Negative regulator of septation ring formatio	93.95
KOG4360	596	consensus Uncharacterized coiled coil protein [Fun	93.92
KOG0243	1041	consensus Kinesin-like protein [Cytoskeleton]	93.91
PF12795	240	MscS_porin: Mechanosensitive ion channel porin dom	93.82
PF15066	527	CAGE1: Cancer-associated gene protein 1 family	93.62
KOG0243	1041	consensus Kinesin-like protein [Cytoskeleton]	93.57
PF10146	230	zf-C4H2: Zinc finger-containing protein ; InterPro	93.36
PF11559	151	ADIP: Afadin- and alpha -actinin-Binding; InterPro	93.28
PF08614	194	ATG16: Autophagy protein 16 (ATG16); InterPro: IPR	93.27
PF13514	1111	AAA_27: AAA domain	93.19
PF06008	264	Laminin_I: Laminin Domain I; InterPro: IPR009254 L	93.15
PF10212	518	TTKRSYEDQ: Predicted coiled-coil domain-containing	93.05
PLN03229	762	acetyl-coenzyme A carboxylase carboxyl transferase	92.89
PF04111	314	APG6: Autophagy protein Apg6; InterPro: IPR007243	92.88
KOG0249	916	consensus LAR-interacting protein and related prot	92.85
PF09304	107	Cortex-I_coil: Cortexillin I, coiled coil; InterPr	92.83
PF09304	107	Cortex-I_coil: Cortexillin I, coiled coil; InterPr	92.64
PF06818	202	Fez1: Fez1; InterPro: IPR009638 This family repres	92.5
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	92.42
KOG1899	861	consensus LAR transmembrane tyrosine phosphatase-i	92.42
PF10481	307	CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR0	92.4
PF08614	194	ATG16: Autophagy protein 16 (ATG16); InterPro: IPR	92.38
KOG1853	333	consensus LIS1-interacting protein NUDE [Cytoskele	92.37
KOG0804	493	consensus Cytoplasmic Zn-finger protein BRAP2 (BRC	92.01
KOG0249	916	consensus LAR-interacting protein and related prot	91.96
PF10267	395	Tmemb_cc2: Predicted transmembrane and coiled-coil	91.79
PF15450	531	DUF4631: Domain of unknown function (DUF4631)	91.53
PF10212	518	TTKRSYEDQ: Predicted coiled-coil domain-containing	91.48
KOG4360	596	consensus Uncharacterized coiled coil protein [Fun	91.46
KOG2129	552	consensus Uncharacterized conserved protein H4 [Fu	91.35
PF13166	712	AAA_13: AAA domain	91.35
PF07111	739	HCR: Alpha helical coiled-coil rod protein (HCR);	91.32
COG2433	652	Uncharacterized conserved protein [Function unknow	90.92
COG4026	290	Uncharacterized protein containing TOPRIM domain,	90.89
PF15066	527	CAGE1: Cancer-associated gene protein 1 family	90.84
PF04582	326	Reo_sigmaC: Reovirus sigma C capsid protein; Inter	90.73
KOG1853	333	consensus LIS1-interacting protein NUDE [Cytoskele	90.62
COG2433	652	Uncharacterized conserved protein [Function unknow	90.52
PF04012	221	PspA_IM30: PspA/IM30 family; InterPro: IPR007157 T	90.37
PF09738	302	DUF2051: Double stranded RNA binding protein (DUF2	90.15
PF05384	159	DegS: Sensor protein DegS; InterPro: IPR008595 Thi	90.08
PF00769	246	ERM: Ezrin/radixin/moesin family; InterPro: IPR011	90.05
PF14197	69	Cep57_CLD_2: Centrosome localisation domain of PPC	89.56
PF08647	96	BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR01395	89.16
PRK10869	553	recombination and repair protein; Provisional	89.08
PF10498	359	IFT57: Intra-flagellar transport protein 57 ; Inte	89.03
KOG4809	654	consensus Rab6 GTPase-interacting protein involved	88.91
COG1842	225	PspA Phage shock protein A (IM30), suppresses sigm	88.86
KOG0982	502	consensus Centrosomal protein Nuf [Cell cycle cont	88.7
PF10498	359	IFT57: Intra-flagellar transport protein 57 ; Inte	88.6
PF11559	151	ADIP: Afadin- and alpha -actinin-Binding; InterPro	88.55
COG4026	290	Uncharacterized protein containing TOPRIM domain,	88.24
PF02994	370	Transposase_22: L1 transposable element; InterPro:	87.25
PF13166	712	AAA_13: AAA domain	87.04
KOG0239	670	consensus Kinesin (KAR3 subfamily) [Cytoskeleton]	87.02
PF15397	258	DUF4618: Domain of unknown function (DUF4618)	86.48
PRK09343	121	prefoldin subunit beta; Provisional	86.23
COG1842	225	PspA Phage shock protein A (IM30), suppresses sigm	86.15
PF10481	307	CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR0	86.12
PF07106	169	TBPIP: Tat binding protein 1(TBP-1)-interacting pr	86.06
TIGR02977	219	phageshock_pspA phage shock protein A. Members of	86.04
PF05384	159	DegS: Sensor protein DegS; InterPro: IPR008595 Thi	85.69
PRK10884	206	SH3 domain-containing protein; Provisional	85.62
KOG0982	502	consensus Centrosomal protein Nuf [Cell cycle cont	85.54
PF11932	251	DUF3450: Protein of unknown function (DUF3450); In	85.53
KOG2991	330	consensus Splicing regulator [RNA processing and m	85.08
COG5185	622	HEC1 Protein involved in chromosome segregation, i	84.24
PF14915	305	CCDC144C: CCDC144C protein coiled-coil region	84.09
KOG4302	660	consensus Microtubule-associated protein essential	83.84
TIGR00618	1042	sbcc exonuclease SbcC. This family is based on the	83.82
PF03148	384	Tektin: Tektin family; InterPro: IPR000435 Tektin	83.58
PF04582	326	Reo_sigmaC: Reovirus sigma C capsid protein; Inter	83.47
PF11932	251	DUF3450: Protein of unknown function (DUF3450); In	82.86
PRK10884	206	SH3 domain-containing protein; Provisional	82.8
PLN02939	977	transferase, transferring glycosyl groups	82.51
PF07106	169	TBPIP: Tat binding protein 1(TBP-1)-interacting pr	82.42
KOG0804	493	consensus Cytoplasmic Zn-finger protein BRAP2 (BRC	82.38
PF10267	395	Tmemb_cc2: Predicted transmembrane and coiled-coil	82.11
KOG1937	521	consensus Uncharacterized conserved protein [Funct	82.04
KOG4603	201	consensus TBP-1 interacting protein [Signal transd	81.95
PF05276	239	SH3BP5: SH3 domain-binding protein 5 (SH3BP5); Int	81.68
PRK09841	726	cryptic autophosphorylating protein tyrosine kinas	81.41
PF04912	388	Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamit	81.11
PF12329	74	TMF_DNA_bd: TATA element modulatory factor 1 DNA b	80.87
KOG2196	254	consensus Nuclear porin [Nuclear structure]	80.83
PF15450	531	DUF4631: Domain of unknown function (DUF4631)	80.8
COG3096	1480	MukB Uncharacterized protein involved in chromosom	80.58
PF00769	246	ERM: Ezrin/radixin/moesin family; InterPro: IPR011	80.41

>PF07765 KIP1: KIP1-like protein; InterPro: IPR011684 This is a group of sequences found exclusively in plants

Probab=100.00  E-value=1.3e-41  Score=281.00  Aligned_cols=74  Identities=85%  Similarity=1.419  Sum_probs=73.5

Q ss_pred             ccccccCCCCCCchhHHHhHHHHHHHHHHHHHHHhhhcchHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHhh
Q 046695           16 SWWWDSHISPKNSKWLAENLEEMDQSVKRMLKLIEEDGDSFAKKAEMYYQKRPELISHVEEFYRMYRSLAERYD   89 (604)
Q Consensus        16 ~~~~~sh~~~~~~~wl~~~l~~~~~~~~~~l~~i~~d~ds~a~~ae~y~~~rp~l~~~v~~~~~~y~~laeryd   89 (604)
                      ||||+|||+|++||||++||+|||+|||.||++|++||||||+||||||+|||+||++|+||||+||+||||||
T Consensus         1 swww~sHi~~~~skWL~~~l~dmd~kvk~mlklieedgdSfakrAEmyy~kRp~Li~~vee~yr~YrsLAerYD   74 (74)
T PF07765_consen    1 SWWWDSHISPKQSKWLQENLSDMDEKVKAMLKLIEEDGDSFAKRAEMYYKKRPELISLVEEFYRSYRSLAERYD   74 (74)
T ss_pred             ChhhhhcCCCCCCHHHHHHHHHHHHHHHHHHHHhccCcchHHHhhHHHhcccHHHHHHHHHHHHHHHHHHHhcC
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999998

They are similar to kinase interacting protein 1 (KIP1), which has been found to interact with the kinase domain of PRK1, a receptor-like kinase []. This particular region contains two coiled-coils, which are described as motifs involved in protein-protein interactions []. It has also been suggested that the coiled-coils of the protein allow it to dimerise in vivo [].

>PRK02224 chromosome segregation protein; Provisional

Probab=99.35  E-value=6e-08  Score=114.81  Aligned_cols=125  Identities=21%  Similarity=0.251  Sum_probs=55.9

Q ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHH-----HHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 046695          471 QLKASIAERDKHIENLNRSLDSLKAERDRLESDVISRDDRMDQME-----KHLQQLHMEHTELIKGAEDAHRMVGELRLK  545 (604)
Q Consensus       471 ~lk~el~e~~~~Le~L~~ek~~Le~el~~Leqe~~s~r~~I~emE-----~~L~qLr~E~e~le~~l~elk~kl~ELK~r  545 (604)
                      .+..++..+...+..+...+..++.....+..++..++..|.+++     ..+..+..++..+...+..+...+.+++..
T Consensus       596 ~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~r~~i~~l~~~~~~~~~e~l~~~~~~~~~~~~~l~~~l~~~~~~  675 (880)
T PRK02224        596 TLLAAIADAEDEIERLREKREALAELNDERRERLAEKRERKRELEAEFDEARIEEAREDKERAEEYLEQVEEKLDELREE  675 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333333333333343444444444445555555555542     234444455555555555555555555555


Q ss_pred             HHHHHHHHHHHHHhhh--hhhhhHHHHHHHHhhhHHHHHhhHHHHHHHHhcC
Q 046695          546 AKELEEEIEKQRVVIL--EGAEEKREAIRQLCFSLEHYRSGYISLRKAVIGH  595 (604)
Q Consensus       546 v~eLeEeve~qk~~i~--~~aEeKreAIrQlcfslehyR~~y~~L~~~~~gh  595 (604)
                      +..+..++......+.  +...++.+++...=.-|++.+.-+..|+.++.+|
T Consensus       676 ~~~l~~~i~~~~~~~e~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~~~~~~  727 (880)
T PRK02224        676 RDDLQAEIGAVENELEELEELRERREALENRVEALEALYDEAEELESMYGDL  727 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5555555544333332  2333334444444444555444444444444443

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type

Probab=99.31  E-value=1.5e-08  Score=121.73  Aligned_cols=133  Identities=30%  Similarity=0.426  Sum_probs=82.4

Q ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 046695          419 IKAEILGLYEEKACLVEQLREWESRGRSLEDELRIIKTQKTELEERIVGEIEQLKASIAERDKHIENLNRSLDSLKAERD  498 (604)
Q Consensus       419 l~~ei~~LqEk~~sLe~eL~ele~~i~sLe~eIkql~~E~~e~e~~le~eIs~lk~el~e~~~~Le~L~~ek~~Le~el~  498 (604)
                      +..++..+..++..+...+..+..++..+..++..+..++   . .+..++..+...+......+..+..+...+...+.
T Consensus       808 ~~~~~~~~~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~l---~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  883 (1179)
T TIGR02168       808 LRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQI---E-ELSEDIESLAAEIEELEELIEELESELEALLNERA  883 (1179)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence            3444445555555555555555555555555555555555   2 34445555666666666666666666666666666


Q ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 046695          499 RLESDVISRDDRMDQMEKHLQQLHMEHTELIKGAEDAHRMVGELRLKAKELEEEIEK  555 (604)
Q Consensus       499 ~Leqe~~s~r~~I~emE~~L~qLr~E~e~le~~l~elk~kl~ELK~rv~eLeEeve~  555 (604)
                      .+..++......+.+++..+..++.+...+...+..+...+..++.++..+.+++..
T Consensus       884 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~l~~~l~e  940 (1179)
T TIGR02168       884 SLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDN  940 (1179)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            677777777777777777777776666666666666777777777666666666544

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type

Probab=99.28  E-value=5.3e-08  Score=117.39  Aligned_cols=37  Identities=14%  Similarity=0.045  Sum_probs=19.7

Q ss_pred             HHHHHHHhhHHHHHHHHHhhhhcHHHHHHHHHHHhhh
Q 046695          231 ALFARIVGYEKKLRLANEKIHISNEEILRLKIELQKY  267 (604)
Q Consensus       231 ~l~~~~~~~~~el~~~n~~~~~~e~ei~~lk~ele~~  267 (604)
                      .+..++......|..++.++...+..+..|+.+++.+
T Consensus       167 ~~~~~~~~~~~~l~~~~~~l~el~~~~~~L~~q~~~l  203 (1164)
T TIGR02169       167 EFDRKKEKALEELEEVEENIERLDLIIDEKRQQLERL  203 (1164)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444455555555555555555555555555554

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.

>PRK02224 chromosome segregation protein; Provisional

Probab=99.24  E-value=2.6e-07  Score=109.42  Aligned_cols=34  Identities=26%  Similarity=0.312  Sum_probs=20.0

Q ss_pred             HHHHhhHHHHHHHHHhhhhcHHHHHHHHHHHhhh
Q 046695          234 ARIVGYEKKLRLANEKIHISNEEILRLKIELQKY  267 (604)
Q Consensus       234 ~~~~~~~~el~~~n~~~~~~e~ei~~lk~ele~~  267 (604)
                      .++..+.+++..++.+++..+.++..+..+++.+
T Consensus       363 ~~~~~l~~~~~~~~~~l~~~~~~l~~l~~el~el  396 (880)
T PRK02224        363 EEAAELESELEEAREAVEDRREEIEELEEEIEEL  396 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444444555556666666666666666666655

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type

Probab=99.24  E-value=8.7e-08  Score=115.51  Aligned_cols=12  Identities=17%  Similarity=0.315  Sum_probs=5.9

Q ss_pred             hhHHHHHHHHhc
Q 046695          583 SGYISLRKAVIG  594 (604)
Q Consensus       583 ~~y~~L~~~~~g  594 (604)
                      .+|..--.+..|
T Consensus       535 ~~y~~Aie~~lg  546 (1164)
T TIGR02169       535 ERYATAIEVAAG  546 (1164)
T ss_pred             HHHHHHHHHHhh
Confidence            455544445555

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.

>PRK03918 chromosome segregation protein; Provisional

Probab=99.21  E-value=4.6e-07  Score=107.18  Aligned_cols=17  Identities=18%  Similarity=0.214  Sum_probs=7.2

Q ss_pred             HHHHHHHHhhhHHHHHh
Q 046695          567 KREAIRQLCFSLEHYRS  583 (604)
Q Consensus       567 KreAIrQlcfslehyR~  583 (604)
                      +.++|+...=.+..+|.
T Consensus       712 ~~~~l~~~~~~l~~lr~  728 (880)
T PRK03918        712 ELEKLEKALERVEELRE  728 (880)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            33444433333444444

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type

Probab=99.21  E-value=6.4e-08  Score=116.27  Aligned_cols=126  Identities=21%  Similarity=0.282  Sum_probs=60.3

Q ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 046695          419 IKAEILGLYEEKACLVEQLREWESRGRSLEDELRIIKTQKTELEERIVGEIEQLKASIAERDKHIENLNRSLDSLKAERD  498 (604)
Q Consensus       419 l~~ei~~LqEk~~sLe~eL~ele~~i~sLe~eIkql~~E~~e~e~~le~eIs~lk~el~e~~~~Le~L~~ek~~Le~el~  498 (604)
                      +...+..+...+..+..++..+..++..+..++..+..++   . .+...+..+...+..+...+..+..+...+...+.
T Consensus       815 ~~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~l~~~~~~~---~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~  890 (1179)
T TIGR02168       815 LNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDI---E-SLAAEIEELEELIEELESELEALLNERASLEEALA  890 (1179)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H-HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4445555556666666666666666666666666655554   2 23334444444444444444444444444444444


Q ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 046695          499 RLESDVISRDDRMDQMEKHLQQLHMEHTELIKGAEDAHRMVGELRLKAKE  548 (604)
Q Consensus       499 ~Leqe~~s~r~~I~emE~~L~qLr~E~e~le~~l~elk~kl~ELK~rv~e  548 (604)
                      .+...+......+..++..+..+..++..+...+..+...+..+..++.+
T Consensus       891 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~l~~~l~e  940 (1179)
T TIGR02168       891 LLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDN  940 (1179)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444444444444444444444444444444444444444444444433

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.

>PRK03918 chromosome segregation protein; Provisional

Probab=99.15  E-value=3.6e-06  Score=99.69  Aligned_cols=94  Identities=24%  Similarity=0.282  Sum_probs=38.4

Q ss_pred             HHHHHHhHHHHHHHHHHHHHHHH-----HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh--hHHHHHH
Q 046695          500 LESDVISRDDRMDQMEKHLQQLH-----MEHTELIKGAEDAHRMVGELRLKAKELEEEIEKQRVVILEGAE--EKREAIR  572 (604)
Q Consensus       500 Leqe~~s~r~~I~emE~~L~qLr-----~E~e~le~~l~elk~kl~ELK~rv~eLeEeve~qk~~i~~~aE--eKreAIr  572 (604)
                      +...+......|..++..+..+.     ..+..+...+..+...+.++...+..+...++..+..|.....  ++.+...
T Consensus       631 ~~~~i~~l~~~i~~l~~~~~~l~~~~~~~~~~~l~~~~~~l~~~l~~l~~~~~~l~~~i~~l~~~i~~~~~~~~~l~~~~  710 (880)
T PRK03918        631 AFEELAETEKRLEELRKELEELEKKYSEEEYEELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELEEREKAK  710 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333444444444443     3334444444444444444444444444444444444433311  1222222


Q ss_pred             HHhhhHHHHHhhHHHHHHHHh
Q 046695          573 QLCFSLEHYRSGYISLRKAVI  593 (604)
Q Consensus       573 QlcfslehyR~~y~~L~~~~~  593 (604)
                      .-.-.+..+..+++.++.+|.
T Consensus       711 ~~~~~l~~~~~~l~~lr~~~~  731 (880)
T PRK03918        711 KELEKLEKALERVEELREKVK  731 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            223333444444555555443

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=99.10  E-value=8.6e-07  Score=108.39  Aligned_cols=61  Identities=30%  Similarity=0.336  Sum_probs=50.0

Q ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhH-HHHHhhHHHH
Q 046695          528 LIKGAEDAHRMVGELRLKAKELEEEIEKQRVVILEGAEEKREAIRQLCFSL-EHYRSGYISL  588 (604)
Q Consensus       528 le~~l~elk~kl~ELK~rv~eLeEeve~qk~~i~~~aEeKreAIrQlcfsl-ehyR~~y~~L  588 (604)
                      ....+.....+...|+.+...+.+..+..+.+|.++-..++++...-|.-+ +|++.-|..|
T Consensus       968 Aiee~e~~~~r~~~l~~~~~dl~~a~~~l~~~i~~~d~~~~~~f~~~f~~In~~F~~if~~L 1029 (1163)
T COG1196         968 AIEEYEEVEERYEELKSQREDLEEAKEKLLEVIEELDKEKRERFKETFDKINENFSEIFKEL 1029 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            344777888999999999999999999999999999999999999877654 3455555444

>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]

Probab=99.07  E-value=3.8e-06  Score=104.92  Aligned_cols=94  Identities=21%  Similarity=0.334  Sum_probs=45.3

Q ss_pred             hhhhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 046695          297 EGINGLETPSLDLDNKVKALMEELRITKEKLMLSEAEIASLKQEVESNRSEKIQTLQNQLQLAQKDIATWKSKLNSERKE  376 (604)
Q Consensus       297 ~~I~eLE~el~el~~kl~~L~eEL~~~~eeL~~se~eI~~Lk~EL~sl~~~kieqLq~eLe~~q~eie~i~~kLE~e~~e  376 (604)
                      ..+..+++++...+..+..++.....+.+.|...+.++..++..+... ..-+.+++..+..++.+|.++...++.++..
T Consensus      1041 k~~rkle~el~~~~e~~~~~~~~~~el~~~l~kke~El~~l~~k~e~e-~~~~~~l~k~i~eL~~~i~el~e~le~er~~ 1119 (1930)
T KOG0161|consen 1041 KAKRKLEGELKDLQESIEELKKQKEELDNQLKKKESELSQLQSKLEDE-QAEVAQLQKQIKELEARIKELEEELEAERAS 1119 (1930)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444444444444444444444455555555555555555444 4445555555555555555555555555544


Q ss_pred             HHHHHHHHHHHHhhh
Q 046695          377 VSKLQERIKSLKTSL  391 (604)
Q Consensus       377 i~~LqeeI~eLk~ql  391 (604)
                      +.++......|...+
T Consensus      1120 r~K~ek~r~dL~~el 1134 (1930)
T KOG0161|consen 1120 RAKAERQRRDLSEEL 1134 (1930)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            444433333333333

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=99.05  E-value=5.5e-06  Score=101.48  Aligned_cols=89  Identities=21%  Similarity=0.405  Sum_probs=44.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 046695          465 IVGEIEQLKASIAERDKHIENLNRSLDSLKAERDRLESDVISRDDRMDQMEKHLQQLHMEHTELIKGAEDAHRMVGELRL  544 (604)
Q Consensus       465 le~eIs~lk~el~e~~~~Le~L~~ek~~Le~el~~Leqe~~s~r~~I~emE~~L~qLr~E~e~le~~l~elk~kl~ELK~  544 (604)
                      ++.+|..+...+......++.+..+...+..++..+..++...+..|..++.++..++..+..+...+..+...+..++.
T Consensus       402 l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  481 (1163)
T COG1196         402 LKREIESLEERLERLSERLEDLKEELKELEAELEELQTELEELNEELEELEEQLEELRDRLKELERELAELQEELQRLEK  481 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444444444444455555555555555555555555555555555555555555555555444444444444444444


Q ss_pred             HHHHHHHHH
Q 046695          545 KAKELEEEI  553 (604)
Q Consensus       545 rv~eLeEev  553 (604)
                      .+..+..++
T Consensus       482 ~l~~~~~~~  490 (1163)
T COG1196         482 ELSSLEARL  490 (1163)
T ss_pred             HHHHHHHHH
Confidence            444444444

>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]

Probab=99.04  E-value=2.6e-06  Score=106.32  Aligned_cols=74  Identities=20%  Similarity=0.314  Sum_probs=41.5

Q ss_pred             CCCCCchhHHHhHHHHHHHHHHHHHHHh--------hhcchHHHHHHhh---hcchhHHHHHHHHHHHHHHHHHHHhhhh
Q 046695           23 ISPKNSKWLAENLEEMDQSVKRMLKLIE--------EDGDSFAKKAEMY---YQKRPELISHVEEFYRMYRSLAERYDHV   91 (604)
Q Consensus        23 ~~~~~~~wl~~~l~~~~~~~~~~l~~i~--------~d~ds~a~~ae~y---~~~rp~l~~~v~~~~~~y~~laeryd~~   91 (604)
                      .+-.-..||..|..=..+.|-.+|.-..        .|--.++..+-+|   ++.++-.+.-|--.|+      +..+.+
T Consensus       577 V~Y~~~~WL~Knkdpln~~v~~ll~~s~~~~v~~l~~~~~~~~~~~~~~~~~~~~K~g~F~Tvs~~~k------eql~~L  650 (1930)
T KOG0161|consen  577 VDYNVDGWLEKNKDPLNDNVVSLLKQSTNKLVSSLFQDYAGAAAAAKGGEALKKTKKGSFRTVSQLYK------EQLNKL  650 (1930)
T ss_pred             eccCccchhhcCCCCchHHHHHHHHhcccHHHHHHhhhhhccchhhhhhhhhcccCCcchhhHHHHHH------HHHHHH
Confidence            5556677998887777666666555322        1212223222333   4455544444433333      455778


Q ss_pred             hHHHhhhCCcc
Q 046695           92 TGELRKNIPSD  102 (604)
Q Consensus        92 ~~el~~~~~~~  102 (604)
                      ...|++-.|+-
T Consensus       651 m~~l~~T~phF  661 (1930)
T KOG0161|consen  651 MTTLRSTHPHF  661 (1930)
T ss_pred             HHHhccCCCce
Confidence            88888888863

>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]

Probab=99.02  E-value=1.2e-05  Score=99.25  Aligned_cols=368  Identities=19%  Similarity=0.267  Sum_probs=205.1

Q ss_pred             HHHHHhhhHHHH----HHHHhhhhhhhhhhhhhhhcccCCCChHHHHHHHHhhHHHHHHHHHhhhhcHHHHHHHHHHHhh
Q 046695          191 LQRKVNELETEL----REAKEKLHSQEERIADESMKGAKNENPEALFARIVGYEKKLRLANEKIHISNEEILRLKIELQK  266 (604)
Q Consensus       191 l~~~~~~le~e~----~~~~~k~~~~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~el~~~n~~~~~~e~ei~~lk~ele~  266 (604)
                      +-.++-+|+.++    .+..+.+..+++..-.-+-      ..-+++.....+...+.+|.+++..+.+.|..+|.++..
T Consensus       634 ~e~~l~qLe~~le~~~~E~~~~~~~l~e~~~~l~~------ev~~ir~~l~k~~~~~~fA~ekle~L~~~ie~~K~e~~t  707 (1822)
T KOG4674|consen  634 KEKRLRQLENELESYKKEKRENLKKLQEDFDSLQK------EVTAIRSQLEKLKNELNLAKEKLENLEKNLELTKEEVET  707 (1822)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344566677776    3334444444333211100      112333444444555558888899999999999998887


Q ss_pred             hccccchhhhhhccCChhhhhhhhchHHHHhhhhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 046695          267 YNSSETNNYLQADFGSPAEINVNMWDAELQEGINGLETPSLDLDNKVKALMEELRITKEKLMLSEAEIASLKQEVESNRS  346 (604)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~e~~~~~~~~~Lq~~I~eLE~el~el~~kl~~L~eEL~~~~eeL~~se~eI~~Lk~EL~sl~~  346 (604)
                      |..-  ..                   .       |...|......+..+..+|..+...+..++.++..|+.+-.-+ .
T Consensus       708 L~er--~~-------------------~-------l~~~i~~~~q~~~~~s~eL~~a~~k~~~le~ev~~LKqE~~ll-~  758 (1822)
T KOG4674|consen  708 LEER--NK-------------------N-------LQSTISKQEQTVHTLSQELLSANEKLEKLEAELSNLKQEKLLL-K  758 (1822)
T ss_pred             HHHH--HH-------------------H-------HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH-H
Confidence            7311  11                   1       2222233334455566666677777777777777777765443 4


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhHHH---HHHHHHH-HHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhchHHHhHHHH
Q 046695          347 EKIQTLQNQLQLAQKDIATWKSKLNSER---KEVSKLQ-ERIKSLKTSLSDRDHEVRDLKMAVSDAEQKIFPEKAQIKAE  422 (604)
Q Consensus       347 ~kieqLq~eLe~~q~eie~i~~kLE~e~---~ei~~Lq-eeI~eLk~qlq~leeeI~eLk~~l~d~eekls~eKa~l~~e  422 (604)
                      ..-..|..+++....+...++.-+....   ....... .+-..+..++..+.+++..|+..+....+.+......++..
T Consensus       759 ~t~~rL~~e~~~l~~e~~~L~~~l~~lQt~~~~~e~s~~~~k~~~e~~i~eL~~el~~lk~klq~~~~~~r~l~~~~~~~  838 (1822)
T KOG4674|consen  759 ETEERLSQELEKLSAEQESLQLLLDNLQTQKNELEESEMATKDKCESRIKELERELQKLKKKLQEKSSDLRELTNSLEKQ  838 (1822)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH
Confidence            4455555555555555554443322222   1111111 22333445555555555555555555555555544445555


Q ss_pred             HHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHH
Q 046695          423 ILGLYEEKACLVEQLREWESRGRSLEDELRIIKTQKTELEERI---------------VGEIEQLKASIAERDKHIENLN  487 (604)
Q Consensus       423 i~~LqEk~~sLe~eL~ele~~i~sLe~eIkql~~E~~e~e~~l---------------e~eIs~lk~el~e~~~~Le~L~  487 (604)
                      +...+..+..+...+..|...+..+...|..+..++.++...+               ..+...+-+.++.....+..+.
T Consensus       839 l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~le~k~~eL~k~l~~~~~~~~~l~~~~~~~d~~~~~~~Lr~~~eq~~~l~  918 (1822)
T KOG4674|consen  839 LENAQNLVDELESELKSLLTSLDSVSTNIAKLEIKLSELEKRLKSAKTQLLNLDSKSSNEDATILEDTLRKELEEITDLK  918 (1822)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhccccchhhhhhhhhHHHHHHHHHHHHHH
Confidence            5555555555555555555555555555555554442222100               1112222222222222333333


Q ss_pred             hhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhH
Q 046695          488 RSLDSLKAERDRLESDVISRDDRMDQMEKHLQQLHMEHTELIKGAEDAHRMVGELRLKAKELEEEIEKQRVVILEGAEEK  567 (604)
Q Consensus       488 ~ek~~Le~el~~Leqe~~s~r~~I~emE~~L~qLr~E~e~le~~l~elk~kl~ELK~rv~eLeEeve~qk~~i~~~aEeK  567 (604)
                      .+...-...+..+...+.....-+..|...+.+.+.   .+++.+...+.++..++.++..|..++..++...-=...+|
T Consensus       919 ~~L~~a~s~i~~yqe~~~s~eqsl~~~ks~lde~~~---~~ea~ie~~~~k~tslE~~ls~L~~~~~~l~~e~~~~~k~~  995 (1822)
T KOG4674|consen  919 EELTDALSQIREYQEEYSSLEQSLESVKSELDETRL---ELEAKIESLHKKITSLEEELSELEKEIENLREELELSTKGK  995 (1822)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccch
Confidence            333333445556666666666677777777776663   35566677788888888888888888888887776667777


Q ss_pred             HHHHHHHhhhHHHHHhhHHHHHHHHhcCC
Q 046695          568 REAIRQLCFSLEHYRSGYISLRKAVIGHK  596 (604)
Q Consensus       568 reAIrQlcfslehyR~~y~~L~~~~~gh~  596 (604)
                      +.+.--+---|.|.|+.|+.++.+...|-
T Consensus       996 e~~~~~~~~e~~sl~ne~~~~~~~~s~~~ 1024 (1822)
T KOG4674|consen  996 EDKLLDLSREISSLQNELKSLLKAASQAN 1024 (1822)
T ss_pred             hhhHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence            77777777778999999999988887763

>TIGR00606 rad50 rad50

Probab=99.02  E-value=1e-05  Score=100.20  Aligned_cols=55  Identities=11%  Similarity=0.112  Sum_probs=25.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH--HHHHHhHHHHHHHHHHHHH
Q 046695          465 IVGEIEQLKASIAERDKHIENLNRSLDSLKAERDRL--ESDVISRDDRMDQMEKHLQ  519 (604)
Q Consensus       465 le~eIs~lk~el~e~~~~Le~L~~ek~~Le~el~~L--eqe~~s~r~~I~emE~~L~  519 (604)
                      ++.++..+...+..+...|..+...+..+...+..+  ..++......|.+++.++.
T Consensus       989 le~e~~~l~~~i~~l~kel~~~~~~kr~l~dnL~~~~~~~~l~el~~eI~~l~~~~~ 1045 (1311)
T TIGR00606       989 CEKHQEKINEDMRLMRQDIDTQKIQERWLQDNLTLRKRENELKEVEEELKQHLKEMG 1045 (1311)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            344444444444444444444444444444444444  4444444444444444433

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []

Probab=98.99  E-value=4.1e-05  Score=89.58  Aligned_cols=83  Identities=18%  Similarity=0.392  Sum_probs=41.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 046695          465 IVGEIEQLKASIAERDKHIENLNRSLDSLKAERDRLESDVISRDDRMDQMEKHLQQLHMEHTELIKGAEDAHRMVGELRL  544 (604)
Q Consensus       465 le~eIs~lk~el~e~~~~Le~L~~ek~~Le~el~~Leqe~~s~r~~I~emE~~L~qLr~E~e~le~~l~elk~kl~ELK~  544 (604)
                      +..++..+...+++....|.-.......+..+...+..++..++..+.-.+..++.|+..++.+...+..-...+..++.
T Consensus       341 Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~~~Ei~~l~d~~d~~e~ki~~Lq~kie~Lee~l~ekd~ql~~~k~  420 (775)
T PF10174_consen  341 LQSDVEALRFRLEEKNSQLEKKQAQIEKLQEEKSRLQGEIEDLRDMLDKKERKINVLQKKIENLEEQLREKDRQLDEEKE  420 (775)
T ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444444444444444444444444455555555555555555555555555555555555555544444444444444


Q ss_pred             HHH
Q 046695          545 KAK  547 (604)
Q Consensus       545 rv~  547 (604)
                      ++.
T Consensus       421 Rl~  423 (775)
T PF10174_consen  421 RLS  423 (775)
T ss_pred             HHh
Confidence            444

Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].

>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]

Probab=98.93  E-value=1.3e-05  Score=98.91  Aligned_cols=96  Identities=25%  Similarity=0.252  Sum_probs=55.1

Q ss_pred             hhHHHHHHHHHhhhhcHHHHHHHHHHHhhhccccchhhhhhccCChhhhhhhhchHHHHhhhhccCCcchh---------
Q 046695          238 GYEKKLRLANEKIHISNEEILRLKIELQKYNSSETNNYLQADFGSPAEINVNMWDAELQEGINGLETPSLD---------  308 (604)
Q Consensus       238 ~~~~el~~~n~~~~~~e~ei~~lk~ele~~~~~~~~~~~~~~~~~~~e~~~~~~~~~Lq~~I~eLE~el~e---------  308 (604)
                      -+-.+|..+|.++..++.++.+||+|-.-+... .+....+.+.|..|..      .++..+..++.....         
T Consensus       728 ~~s~eL~~a~~k~~~le~ev~~LKqE~~ll~~t-~~rL~~e~~~l~~e~~------~L~~~l~~lQt~~~~~e~s~~~~k  800 (1822)
T KOG4674|consen  728 TLSQELLSANEKLEKLEAELSNLKQEKLLLKET-EERLSQELEKLSAEQE------SLQLLLDNLQTQKNELEESEMATK  800 (1822)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344667789999999999999999987776433 3344444555555544      333333333222222         


Q ss_pred             --hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046695          309 --LDNKVKALMEELRITKEKLMLSEAEIASLKQE  340 (604)
Q Consensus       309 --l~~kl~~L~eEL~~~~eeL~~se~eI~~Lk~E  340 (604)
                        +..++..|..+++.++.++..-..++-.+.+.
T Consensus       801 ~~~e~~i~eL~~el~~lk~klq~~~~~~r~l~~~  834 (1822)
T KOG4674|consen  801 DKCESRIKELERELQKLKKKLQEKSSDLRELTNS  834 (1822)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence              22445555555555555555555555554443

>PRK01156 chromosome segregation protein; Provisional

Probab=98.89  E-value=0.00011  Score=87.63  Aligned_cols=16  Identities=13%  Similarity=0.389  Sum_probs=8.0

Q ss_pred             chhHHHhHHHHHHHHH
Q 046695           28 SKWLAENLEEMDQSVK   43 (604)
Q Consensus        28 ~~wl~~~l~~~~~~~~   43 (604)
                      ..|+..+..+....+.
T Consensus       103 g~~~~~~~~~~~~~i~  118 (895)
T PRK01156        103 GSIIAEGFDDTTKYIE  118 (895)
T ss_pred             CeeccccHHHHHHHHH
Confidence            3455555555544443

>PRK01156 chromosome segregation protein; Provisional

Probab=98.89  E-value=4.3e-05  Score=91.14  Aligned_cols=19  Identities=5%  Similarity=0.212  Sum_probs=8.0

Q ss_pred             HHHHHhhhHHHHHHHHhhh
Q 046695          191 LQRKVNELETELREAKEKL  209 (604)
Q Consensus       191 l~~~~~~le~e~~~~~~k~  209 (604)
                      +.+.+..++..+......+
T Consensus       303 ~~~~l~~l~~~l~~l~~~l  321 (895)
T PRK01156        303 YKNDIENKKQILSNIDAEI  321 (895)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            3444444444444333333

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=98.89  E-value=5.4e-05  Score=84.89  Aligned_cols=168  Identities=14%  Similarity=0.144  Sum_probs=94.4

Q ss_pred             HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhchHHHh---HHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 046695          378 SKLQERIKSLKTSLSDRDHEVRDLKMAVSDAEQKIFPEKAQ---IKAEILGLYEEKACLVEQLREWESRGRSLEDELRII  454 (604)
Q Consensus       378 ~~LqeeI~eLk~qlq~leeeI~eLk~~l~d~eekls~eKa~---l~~ei~~LqEk~~sLe~eL~ele~~i~sLe~eIkql  454 (604)
                      ..++.++..++.++..+++.+..-++....+...++...+.   ..+++++..=..+.|+..+.+....++....+..+-
T Consensus       279 ~~~~~e~e~LkeqLr~~qe~lqaSqq~~~~L~~EL~~~~~~RDrt~aeLh~aRLe~aql~~qLad~~l~lke~~~q~~qE  358 (546)
T PF07888_consen  279 QQLQQENEALKEQLRSAQEQLQASQQEAELLRKELSDAVNVRDRTMAELHQARLEAAQLKLQLADASLELKEGRSQWAQE  358 (546)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455555666666666666666666555555555554444   777777777777788777777666665555444443


Q ss_pred             HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH----HHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 046695          455 KTQKTELEERIVGEIEQLKASIAERDKHIENLNRSLDSLKAERDRLE----SDVISRDDRMDQMEKHLQQLHMEHTELIK  530 (604)
Q Consensus       455 ~~E~~e~e~~le~eIs~lk~el~e~~~~Le~L~~ek~~Le~el~~Le----qe~~s~r~~I~emE~~L~qLr~E~e~le~  530 (604)
                      .+.+...-.....+|.+|+.++..+.+.+..=.+++..|..++....    -.+-+.+..|.++...|+-.++|++++..
T Consensus       359 k~~l~~~~e~~k~~ie~L~~el~~~e~~lqEer~E~qkL~~ql~ke~D~n~vqlsE~~rel~Elks~lrv~qkEKEql~~  438 (546)
T PF07888_consen  359 KQALQHSAEADKDEIEKLSRELQMLEEHLQEERMERQKLEKQLGKEKDCNRVQLSENRRELQELKSSLRVAQKEKEQLQE  438 (546)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33331111023456777777777777777666666666666554321    13334445555555555555555555555


Q ss_pred             hHHHHHHHHHHHHHH
Q 046695          531 GAEDAHRMVGELRLK  545 (604)
Q Consensus       531 ~l~elk~kl~ELK~r  545 (604)
                      .-.++...+-.|+.+
T Consensus       439 EkQeL~~yi~~Le~r  453 (546)
T PF07888_consen  439 EKQELLEYIERLEQR  453 (546)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            444443333333333

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]

Probab=98.88  E-value=0.00012  Score=84.80  Aligned_cols=63  Identities=11%  Similarity=0.149  Sum_probs=43.6

Q ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 046695          504 VISRDDRMDQMEKHLQQLHMEHTELIKGAEDAHRMVGELRLKAKELEEEIEKQRVVILEGAEE  566 (604)
Q Consensus       504 ~~s~r~~I~emE~~L~qLr~E~e~le~~l~elk~kl~ELK~rv~eLeEeve~qk~~i~~~aEe  566 (604)
                      ..++|++|..+.-+++.+..++.-.+..+.+...-+-..|-.+..|-..+-.++...+-.+++
T Consensus       492 e~DLreEld~~~g~~kel~~r~~aaqet~yDrdqTI~KfRelva~Lqdqlqe~~dq~~Sseee  554 (1243)
T KOG0971|consen  492 ELDLREELDMAKGARKELQKRVEAAQETVYDRDQTIKKFRELVAHLQDQLQELTDQQESSEEE  554 (1243)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHH
Confidence            345677777777777777777776666666666667777777777777777777666665554

>TIGR00606 rad50 rad50

Probab=98.87  E-value=1.4e-05  Score=99.11  Aligned_cols=15  Identities=13%  Similarity=0.399  Sum_probs=7.7

Q ss_pred             HhhhHHHHHHHHhhh
Q 046695          195 VNELETELREAKEKL  209 (604)
Q Consensus       195 ~~~le~e~~~~~~k~  209 (604)
                      +.+++.++..+...+
T Consensus       641 L~~~~~~l~~~~~~~  655 (1311)
T TIGR00606       641 LERLKEEIEKSSKQR  655 (1311)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            445556665555433

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []

Probab=98.86  E-value=5.4e-05  Score=88.58  Aligned_cols=356  Identities=19%  Similarity=0.242  Sum_probs=159.3

Q ss_pred             CCCChHHHHHHHHhhHHHHHHHHHhhhhcHHHHHHHHHHHhhhccccchhhhhh---ccCC---hhhhhhhhchHHHHhh
Q 046695          225 KNENPEALFARIVGYEKKLRLANEKIHISNEEILRLKIELQKYNSSETNNYLQA---DFGS---PAEINVNMWDAELQEG  298 (604)
Q Consensus       225 ~~~~~~~l~~~~~~~~~el~~~n~~~~~~e~ei~~lk~ele~~~~~~~~~~~~~---~~~~---~~e~~~~~~~~~Lq~~  298 (604)
                      ..+++.-|+++...+..++....+.+..++..|.+++++|.....+ .+..+..   ++..   ..+=+      .....
T Consensus       112 ~~~q~~rl~~E~er~~~El~~lr~~lE~~q~~~e~~q~~l~~~~ee-i~kL~e~L~~~g~~~~~~~~~~------~~~~~  184 (775)
T PF10174_consen  112 AQEQFERLQAERERLQRELERLRKTLEELQLRIETQQQTLDKADEE-IEKLQEMLQSKGLSAEAEEEDN------EALRR  184 (775)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhcCCcccchhhhh------HHHHH
Confidence            3456666777777888888888888888888888888888877444 3333221   1100   00001      11123


Q ss_pred             hhccCCcchhhhHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 046695          299 INGLETPSLDLDNKVKALMEELRI--------------------TKEKLMLSEAEIASLKQEVESNRSEKIQTLQNQLQL  358 (604)
Q Consensus       299 I~eLE~el~el~~kl~~L~eEL~~--------------------~~eeL~~se~eI~~Lk~EL~sl~~~kieqLq~eLe~  358 (604)
                      +.+.+..+..+..-+.....+...                    +...|..-+..|..+...+..+ ...+..|+.....
T Consensus       185 ~~~~e~~~~~le~lle~~e~~~~~~r~~l~~~~~~~~~~a~t~alq~~ie~Kd~ki~~lEr~l~~l-e~Ei~~L~~~~~~  263 (775)
T PF10174_consen  185 IREAEARIMRLESLLERKEKEHMEAREQLHRRLQMERDDAETEALQTVIEEKDTKIASLERMLRDL-EDEIYRLRSRGEL  263 (775)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcccc
Confidence            333333333333222222222211                    1122222223333332222222 2222222222222


Q ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH-------HHHhhhchHHHh---HHHHHHhHHH
Q 046695          359 AQKDIATWKSKLNSERKEVSKLQERIKSLKTSLSDRDHEVRDLKMAVS-------DAEQKIFPEKAQ---IKAEILGLYE  428 (604)
Q Consensus       359 ~q~eie~i~~kLE~e~~ei~~LqeeI~eLk~qlq~leeeI~eLk~~l~-------d~eekls~eKa~---l~~ei~~LqE  428 (604)
                      +....+.....++............+..++-++.....++..+.+.+.       +..+-|...+..   .......|+.
T Consensus       264 ~~~~r~~~~k~le~~~s~~~~mK~k~d~~~~eL~rk~~E~~~~qt~l~~~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqs  343 (775)
T PF10174_consen  264 SEADRDRLDKQLEVYKSHSLAMKSKMDRLKLELSRKKSELEALQTRLETLEEQDSDMRQHIEVLKESLRAKEQEAEMLQS  343 (775)
T ss_pred             cccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            222222221222222222222223334444444444433333333333       333333333332   3334445555


Q ss_pred             HHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHH
Q 046695          429 EKACLVEQLREWESRGRSLEDELRIIKTQKTELEERIVGEIEQLKASIAERDKHIENLNRSLDSLKAERDRLESDVISRD  508 (604)
Q Consensus       429 k~~sLe~eL~ele~~i~sLe~eIkql~~E~~e~e~~le~eIs~lk~el~e~~~~Le~L~~ek~~Le~el~~Leqe~~s~r  508 (604)
                      .+..|+.++......+.-....|..++.++   . .+.++|..+++.++-....|.-|.+..+.+...+..-..++...+
T Consensus       344 dve~Lr~rle~k~~~l~kk~~~~~~~qeE~---~-~~~~Ei~~l~d~~d~~e~ki~~Lq~kie~Lee~l~ekd~ql~~~k  419 (775)
T PF10174_consen  344 DVEALRFRLEEKNSQLEKKQAQIEKLQEEK---S-RLQGEIEDLRDMLDKKERKINVLQKKIENLEEQLREKDRQLDEEK  419 (775)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            555555555555555555555555555555   3 345555555555555555555555544444433222111111111


Q ss_pred             --------------------HHHHHHHHHHHHHHHHHH----HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH-------
Q 046695          509 --------------------DRMDQMEKHLQQLHMEHT----ELIKGAEDAHRMVGELRLKAKELEEEIEKQR-------  557 (604)
Q Consensus       509 --------------------~~I~emE~~L~qLr~E~e----~le~~l~elk~kl~ELK~rv~eLeEeve~qk-------  557 (604)
                                          ..+.+.++-+..+...+.    .....+...+..+.+++..+..|..++...-       
T Consensus       420 ~Rl~~~~d~~~~~~~~~~lEea~~eker~~e~l~e~r~~~e~e~~Eele~~~~e~~~lk~~~~~LQ~eLsEk~~~l~~~k  499 (775)
T PF10174_consen  420 ERLSSQADSSNEDEALETLEEALREKERLQERLEEQRERAEKERQEELETYQKELKELKAKLESLQKELSEKELQLEDAK  499 (775)
T ss_pred             HHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhh
Confidence                                111222222222111111    1112334455555555555555555553322       


Q ss_pred             ---HhhhhhhhhHHHHHHHHhhhHHHHHhhHHHHHHHH
Q 046695          558 ---VVILEGAEEKREAIRQLCFSLEHYRSGYISLRKAV  592 (604)
Q Consensus       558 ---~~i~~~aEeKreAIrQlcfslehyR~~y~~L~~~~  592 (604)
                         ..++.+.+-||.=|.+|-+.||..|+.|..|.--+
T Consensus       500 ee~s~l~s~~~K~~s~i~~l~I~lEk~rek~~kl~~ql  537 (775)
T PF10174_consen  500 EEASKLASSQEKKDSEIERLEIELEKKREKHEKLEKQL  537 (775)
T ss_pred             hHHHHHhhccchhhhHHHHHHHHHHHhhhHHHHHHHHH
Confidence               23344556788889999999999999988775544

Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].

>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=98.85  E-value=3.8e-06  Score=85.54  Aligned_cols=95  Identities=22%  Similarity=0.298  Sum_probs=46.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhhh
Q 046695          314 KALMEELRITKEKLMLSEAEIASLKQEVESNRSEKIQTLQNQLQLAQKDIATWKSKLNSERKEVSKLQERIKSLKTSLSD  393 (604)
Q Consensus       314 ~~L~eEL~~~~eeL~~se~eI~~Lk~EL~sl~~~kieqLq~eLe~~q~eie~i~~kLE~e~~ei~~LqeeI~eLk~qlq~  393 (604)
                      ......+..+...|............++.++ ..++..+...+..+..++.....+|.............++.|......
T Consensus        11 d~~~~~~~~~~~~l~~~~~~~~~aE~e~~~l-~rri~~lE~~le~~eerL~~~~~kL~~~e~~~de~er~~k~lE~r~~~   89 (237)
T PF00261_consen   11 DEAEERLEEAEEKLKEAEKRAEKAEAEVASL-QRRIQLLEEELERAEERLEEATEKLEEAEKRADESERARKVLENREQS   89 (237)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence            3333333333334444444444444444444 445555555555555555555555555555555555555555555555


Q ss_pred             HHHHHHHHHHHHHHHH
Q 046695          394 RDHEVRDLKMAVSDAE  409 (604)
Q Consensus       394 leeeI~eLk~~l~d~e  409 (604)
                      .+.+|..|+..+..+.
T Consensus        90 ~eeri~~lE~~l~ea~  105 (237)
T PF00261_consen   90 DEERIEELEQQLKEAK  105 (237)
T ss_dssp             HHHHHHHCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            5555555554444433

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=98.85  E-value=0.00011  Score=82.61  Aligned_cols=174  Identities=18%  Similarity=0.194  Sum_probs=91.9

Q ss_pred             HHHHHHHHHHHHHHHhhhchHHHh---HHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHH
Q 046695          395 DHEVRDLKMAVSDAEQKIFPEKAQ---IKAEILGLYEEKACLVEQLREWESRGRSLEDELRIIKTQKTELEERIVGEIEQ  471 (604)
Q Consensus       395 eeeI~eLk~~l~d~eekls~eKa~---l~~ei~~LqEk~~sLe~eL~ele~~i~sLe~eIkql~~E~~e~e~~le~eIs~  471 (604)
                      ..++..|+..+..+.+.+..-...   +..++....+.....-.+|+-..-+...|..++.....++.+.......+...
T Consensus       282 ~~e~e~LkeqLr~~qe~lqaSqq~~~~L~~EL~~~~~~RDrt~aeLh~aRLe~aql~~qLad~~l~lke~~~q~~qEk~~  361 (546)
T PF07888_consen  282 QQENEALKEQLRSAQEQLQASQQEAELLRKELSDAVNVRDRTMAELHQARLEAAQLKLQLADASLELKEGRSQWAQEKQA  361 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444444555555444444322211   55555555555555555555444444455555555444443333233334444


Q ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHH----HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 046695          472 LKASIAERDKHIENLNRSLDSLKAERDRLESDVISRDDRMDQME----KHLQQLHMEHTELIKGAEDAHRMVGELRLKAK  547 (604)
Q Consensus       472 lk~el~e~~~~Le~L~~ek~~Le~el~~Leqe~~s~r~~I~emE----~~L~qLr~E~e~le~~l~elk~kl~ELK~rv~  547 (604)
                      ++..+......|+.|..++..+...++.=..+-..+..+|....    -+|.+.++++.++...+.-+.+.-.+|...-.
T Consensus       362 l~~~~e~~k~~ie~L~~el~~~e~~lqEer~E~qkL~~ql~ke~D~n~vqlsE~~rel~Elks~lrv~qkEKEql~~EkQ  441 (546)
T PF07888_consen  362 LQHSAEADKDEIEKLSRELQMLEEHLQEERMERQKLEKQLGKEKDCNRVQLSENRRELQELKSSLRVAQKEKEQLQEEKQ  441 (546)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444444455666666665555544332222222222222211    24666777777777777777777777777777


Q ss_pred             HHHHHHHHHHHhhhhhhhhHH
Q 046695          548 ELEEEIEKQRVVILEGAEEKR  568 (604)
Q Consensus       548 eLeEeve~qk~~i~~~aEeKr  568 (604)
                      +|..-|+++...+=.+|.+|-
T Consensus       442 eL~~yi~~Le~r~~~~~~~~~  462 (546)
T PF07888_consen  442 ELLEYIERLEQRLDKVADEKW  462 (546)
T ss_pred             HHHHHHHHHHHHHHHhhhhhh
Confidence            777777777777777777764

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=98.82  E-value=3.4e-06  Score=85.94  Aligned_cols=145  Identities=17%  Similarity=0.269  Sum_probs=99.0

Q ss_pred             HHHHhhHHHHHHHHHhhhhcHHHHHHHHHHHhhhccccchhhhhhccCChhhhhhhhchHHHHhhhhccCCcchhhhHHH
Q 046695          234 ARIVGYEKKLRLANEKIHISNEEILRLKIELQKYNSSETNNYLQADFGSPAEINVNMWDAELQEGINGLETPSLDLDNKV  313 (604)
Q Consensus       234 ~~~~~~~~el~~~n~~~~~~e~ei~~lk~ele~~~~~~~~~~~~~~~~~~~e~~~~~~~~~Lq~~I~eLE~el~el~~kl  313 (604)
                      .++..+...|..++.++..++.++..|+..+..+                                   +..+......+
T Consensus        15 ~~~~~~~~~l~~~~~~~~~aE~e~~~l~rri~~l-----------------------------------E~~le~~eerL   59 (237)
T PF00261_consen   15 ERLEEAEEKLKEAEKRAEKAEAEVASLQRRIQLL-----------------------------------EEELERAEERL   59 (237)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------------------HCCCHHHHCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------------------HHHHHhHHHHH
Confidence            4444555666666666666666666666666555                                   22333333333


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhhh
Q 046695          314 KALMEELRITKEKLMLSEAEIASLKQEVESNRSEKIQTLQNQLQLAQKDIATWKSKLNSERKEVSKLQERIKSLKTSLSD  393 (604)
Q Consensus       314 ~~L~eEL~~~~eeL~~se~eI~~Lk~EL~sl~~~kieqLq~eLe~~q~eie~i~~kLE~e~~ei~~LqeeI~eLk~qlq~  393 (604)
                      ......|..+......++.....|.+..... ..++..|..++..+....+....++......+.-+...+.....+...
T Consensus        60 ~~~~~kL~~~e~~~de~er~~k~lE~r~~~~-eeri~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~  138 (237)
T PF00261_consen   60 EEATEKLEEAEKRADESERARKVLENREQSD-EERIEELEQQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEERAEA  138 (237)
T ss_dssp             CHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH-HHHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            3334444444455555666666666666555 678889999999999888888888888888888888888888888888


Q ss_pred             HHHHHHHHHHHHHHHHhhhch
Q 046695          394 RDHEVRDLKMAVSDAEQKIFP  414 (604)
Q Consensus       394 leeeI~eLk~~l~d~eekls~  414 (604)
                      ++..|.+|+..+....+++..
T Consensus       139 ~E~ki~eLE~el~~~~~~lk~  159 (237)
T PF00261_consen  139 AESKIKELEEELKSVGNNLKS  159 (237)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH
T ss_pred             hchhHHHHHHHHHHHHHHHHH
Confidence            888888888888777766643

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope

Probab=98.79  E-value=2e-05  Score=82.65  Aligned_cols=58  Identities=17%  Similarity=0.370  Sum_probs=24.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 046695          465 IVGEIEQLKASIAERDKHIENLNRSLDSLKAERDRLESDVISRDDRMDQMEKHLQQLH  522 (604)
Q Consensus       465 le~eIs~lk~el~e~~~~Le~L~~ek~~Le~el~~Leqe~~s~r~~I~emE~~L~qLr  522 (604)
                      ....+..+..........+..+..+...+...++.|..++.+.+.....+++.|.++.
T Consensus       193 y~~k~~~l~~~~~~~~~~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le  250 (312)
T PF00038_consen  193 YQSKLEELRQQSEKSSEELESAKEELKELRRQIQSLQAELESLRAKNASLERQLRELE  250 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccccccccccccccccchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHH
Confidence            3334444444444444444444444444444444444444444444444444444333

They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....

>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]

Probab=98.75  E-value=0.00018  Score=84.24  Aligned_cols=241  Identities=14%  Similarity=0.108  Sum_probs=122.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHh-------hhhhHHHHHHHHHH--HHHHHHhhhchHHHh
Q 046695          348 KIQTLQNQLQLAQKDIATWKSKLNSERKEVSKLQERIKSLKT-------SLSDRDHEVRDLKM--AVSDAEQKIFPEKAQ  418 (604)
Q Consensus       348 kieqLq~eLe~~q~eie~i~~kLE~e~~ei~~LqeeI~eLk~-------qlq~leeeI~eLk~--~l~d~eekls~eKa~  418 (604)
                      ++..|+.+....+..++.+..........-+.|.-...-+..       .-..+..+..+|+.  ++...-+..+...+-
T Consensus       309 kl~dm~~erdtdr~kteeL~eEnstLq~q~eqL~~~~ellq~~se~~E~en~Sl~~e~eqLts~ralkllLEnrrlt~tl  388 (1195)
T KOG4643|consen  309 KLDDMRSERDTDRHKTEELHEENSTLQVQKEQLDGQMELLQIFSENEELENESLQVENEQLTSDRALKLLLENRRLTGTL  388 (1195)
T ss_pred             HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhcchhhhhhhHHHHHHHhhhHHHHHHHHHhHHHHHHH
Confidence            344444444444444444443333333333333322222222       33444555566655  444333332221111


Q ss_pred             ---HHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHH---HHHHHHHHHHHHHHHHHHHHHHH------
Q 046695          419 ---IKAEILGLYEEKACLVEQLREWESRGRSLEDELRIIKTQKTELEE---RIVGEIEQLKASIAERDKHIENL------  486 (604)
Q Consensus       419 ---l~~ei~~LqEk~~sLe~eL~ele~~i~sLe~eIkql~~E~~e~e~---~le~eIs~lk~el~e~~~~Le~L------  486 (604)
                         ....+..+-.+.-.++.+-..+..+++.|+++|.++..++.+++.   .+..+..++..++.....-+..-      
T Consensus       389 eelqsss~Ee~~SK~leleke~KnLs~k~e~Leeri~ql~qq~~eled~~K~L~~E~ekl~~e~~t~~~s~~rq~~e~e~  468 (1195)
T KOG4643|consen  389 EELQSSSYEELISKHLELEKEHKNLSKKHEILEERINQLLQQLAELEDLEKKLQFELEKLLEETSTVTRSLSRQSLENEE  468 (1195)
T ss_pred             HHHhhhhHHHHHHHHHHHHHHhHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHH
Confidence               334555555555556665555666666666666666666654441   23333444444444333332211      


Q ss_pred             -----------HhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 046695          487 -----------NRSLDSLKAERDRLESDVISRDDRMDQMEKHLQQLHMEHTELIKGAEDAHRMVGELRLKAKELEEEIEK  555 (604)
Q Consensus       487 -----------~~ek~~Le~el~~Leqe~~s~r~~I~emE~~L~qLr~E~e~le~~l~elk~kl~ELK~rv~eLeEeve~  555 (604)
                                 ..+-..+...+..+.+-+..+...+..+......+..++..+.-.+.-...++.+|...+.+++++-.-
T Consensus       469 ~~q~ls~~~Q~~~et~el~~~iknlnk~L~~r~~elsrl~a~~~elkeQ~kt~~~qye~~~~k~eeLe~~l~~lE~ENa~  548 (1195)
T KOG4643|consen  469 LDQLLSLQDQLEAETEELLNQIKNLNKSLNNRDLELSRLHALKNELKEQYKTCDIQYELLSNKLEELEELLGNLEEENAH  548 (1195)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence                       111222222333333334444444445555555566666667767777777888888888888888766


Q ss_pred             HHHhhhhhhh--hHHHHHHHHhhhHHHHHhhHHHH
Q 046695          556 QRVVILEGAE--EKREAIRQLCFSLEHYRSGYISL  588 (604)
Q Consensus       556 qk~~i~~~aE--eKreAIrQlcfslehyR~~y~~L  588 (604)
                      +=..|.-+-.  .|++++-|--=.+|-|=.--+.+
T Consensus       549 LlkqI~~Lk~t~qn~~~LEq~~n~lE~~~~elkk~  583 (1195)
T KOG4643|consen  549 LLKQIQSLKTTSQNGALLEQNNNDLELIHNELKKY  583 (1195)
T ss_pred             HHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHH
Confidence            6666655555  88888887766666554444333

>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function

Probab=98.74  E-value=0.0006  Score=77.18  Aligned_cols=21  Identities=29%  Similarity=0.466  Sum_probs=11.7

Q ss_pred             HhhhHHHHHHHHhhhhhhhhh
Q 046695          195 VNELETELREAKEKLHSQEER  215 (604)
Q Consensus       195 ~~~le~e~~~~~~k~~~~~e~  215 (604)
                      +.-++.++..+++.|...+-.
T Consensus        36 L~~~qeel~~~k~~l~~~E~~   56 (522)
T PF05701_consen   36 LEKAQEELAKLKEQLEAAERE   56 (522)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            333556666666666555443

Several sequences in this family are described as being myosin heavy chain-like.

>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]

Probab=98.70  E-value=8.8e-05  Score=86.44  Aligned_cols=105  Identities=23%  Similarity=0.318  Sum_probs=68.7

Q ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046695          478 ERDKHIENLNRSLDSLKAERDRLESDVISRDDRMDQMEKHLQQLHMEHTELIKGAEDAHRMVGELRLKAKELEEEIEKQR  557 (604)
Q Consensus       478 e~~~~Le~L~~ek~~Le~el~~Leqe~~s~r~~I~emE~~L~qLr~E~e~le~~l~elk~kl~ELK~rv~eLeEeve~qk  557 (604)
                      -+..+|..+.++....-+++..|...+.+-+.++.++...+..++.++..+......+...-..|+..+.++++.|+++.
T Consensus       415 ~lq~e~~~~e~~l~~~~e~i~~l~~si~e~~~r~~~~~~~~~~~k~~~del~~~Rk~lWREE~~l~~~i~~~~~dl~~~~  494 (1200)
T KOG0964|consen  415 ILQKEIEDLESELKEKLEEIKELESSINETKGRMEEFDAENTELKRELDELQDKRKELWREEKKLRSLIANLEEDLSRAE  494 (1200)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33334444444444444555555555556666666777777777777777777778888888999999999999998776


Q ss_pred             Hhhhhhhh----hHHHHHHHHhhhHHHHH-hhH
Q 046695          558 VVILEGAE----EKREAIRQLCFSLEHYR-SGY  585 (604)
Q Consensus       558 ~~i~~~aE----eKreAIrQlcfslehyR-~~y  585 (604)
                      ..+-....    -=--+||+.|   +||| +||
T Consensus       495 ~~L~~~~~r~v~nGi~~v~~I~---e~~k~ngv  524 (1200)
T KOG0964|consen  495 KNLRATMNRSVANGIDSVRKIK---EELKPNGV  524 (1200)
T ss_pred             HHHHHhccchhhhhhHHHHHHH---HHhccccc
Confidence            65543332    1123566665   7888 555

>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]

Probab=98.68  E-value=0.001  Score=78.16  Aligned_cols=68  Identities=21%  Similarity=0.366  Sum_probs=34.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 046695          465 IVGEIEQLKASIAERDKHIENLNRSLDSLKAERDRLESDVISRDDRMDQMEKHLQQLHMEHTELIKGA  532 (604)
Q Consensus       465 le~eIs~lk~el~e~~~~Le~L~~ek~~Le~el~~Leqe~~s~r~~I~emE~~L~qLr~E~e~le~~l  532 (604)
                      +..+|.+++.-|.+....+..+.+.++.++..+......|+...+++..++..+.-+..+-..|...+
T Consensus       486 l~~~iknlnk~L~~r~~elsrl~a~~~elkeQ~kt~~~qye~~~~k~eeLe~~l~~lE~ENa~LlkqI  553 (1195)
T KOG4643|consen  486 LLNQIKNLNKSLNNRDLELSRLHALKNELKEQYKTCDIQYELLSNKLEELEELLGNLEEENAHLLKQI  553 (1195)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            34445555555555555555555555555555555555555555555555554444444444333333

>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=98.67  E-value=0.00011  Score=87.13  Aligned_cols=251  Identities=19%  Similarity=0.246  Sum_probs=169.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhh
Q 046695          312 KVKALMEELRITKEKLMLSEAEIASLKQEVESNRSEKIQTLQNQLQLAQKDIATWKSKLNSERKEVSKLQERIKSLKTSL  391 (604)
Q Consensus       312 kl~~L~eEL~~~~eeL~~se~eI~~Lk~EL~sl~~~kieqLq~eLe~~q~eie~i~~kLE~e~~ei~~LqeeI~eLk~ql  391 (604)
                      ....+.......+.+++..+.+-..++..+..+ ..+++.+..+++.+...+.++..-.+.....+.+++.+|..|...+
T Consensus       378 ~~~~~kn~~~~~k~~~~~~e~~~vk~~E~lK~~-~~k~kKleke~ek~~~~~~e~e~~pe~~~~~i~~~~~ei~~L~~~~  456 (1293)
T KOG0996|consen  378 RAKELKNKFESLKKKFQDLEREDVKREEKLKRL-TSKIKKLEKEIEKARRKKSELEKAPEKARIEIQKCQTEIEQLEELL  456 (1293)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhHHHHHhCchhhHhHHHHHHHHHHHHHHHH
Confidence            333344455556666777888888888888777 7778888888888888888888888888877878877777777777


Q ss_pred             hhHHHHHHHHHHHHHHHHhhhchHHHhHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHH
Q 046695          392 SDRDHEVRDLKMAVSDAEQKIFPEKAQIKAEILGLYEEKACLVEQLREWESRGRSLEDELRIIKTQKTELEERIVGEIEQ  471 (604)
Q Consensus       392 q~leeeI~eLk~~l~d~eekls~eKa~l~~ei~~LqEk~~sLe~eL~ele~~i~sLe~eIkql~~E~~e~e~~le~eIs~  471 (604)
                      ...+.++.+....+....+.              +.+++..++.+|.-|..++.....++.-.+.++   . .+...-++
T Consensus       457 ~~~~~~l~e~~~~l~~~t~~--------------~~~e~~~~ekel~~~~~~~n~~~~e~~vaesel---~-~L~~~~~~  518 (1293)
T KOG0996|consen  457 EKEERELDEILDSLKQETEG--------------IREEIEKLEKELMPLLKQVNEARSELDVAESEL---D-ILLSRHET  518 (1293)
T ss_pred             HHHHHHHHHHHHHHhhhhhh--------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H-HHHHHHHH
Confidence            66666666655555443333              344444455555555555555555555555555   3 34445555


Q ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 046695          472 LKASIAERDKHIENLNRSLDSLKAERDRLESDVISRDDRMDQMEKHLQQLHMEHTELIKGAEDAHRMVGELRLKAKELEE  551 (604)
Q Consensus       472 lk~el~e~~~~Le~L~~ek~~Le~el~~Leqe~~s~r~~I~emE~~L~qLr~E~e~le~~l~elk~kl~ELK~rv~eLeE  551 (604)
                      ....+.++...|..+..........+..++..+.++..++.+.+..+..++.+...+...++.++.++.+++..++.-..
T Consensus       519 ~~~~~e~lk~~L~~~~~~~~e~~~~l~~~k~~l~~~k~e~~~~~k~l~~~~~e~~~~~~~~~~~rqrveE~ks~~~~~~s  598 (1293)
T KOG0996|consen  519 GLKKVEELKGKLLASSESLKEKKTELDDLKEELPSLKQELKEKEKELPKLRKEERNLKSQLNKLRQRVEEAKSSLSSSRS  598 (1293)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            66666777777777777777788888888888888888888888888888888888888888888888888876665555


Q ss_pred             HHHHHHHhh-----------------hhhhhhH-HHHHHHHhhhHHHH
Q 046695          552 EIEKQRVVI-----------------LEGAEEK-REAIRQLCFSLEHY  581 (604)
Q Consensus       552 eve~qk~~i-----------------~~~aEeK-reAIrQlcfslehy  581 (604)
                      +-+=+....                 +++-..| .=||.=.|=-|+|.
T Consensus       599 ~~kVl~al~r~kesG~i~Gf~GRLGDLg~Id~kYDvAIsTac~~Ldyi  646 (1293)
T KOG0996|consen  599 RNKVLDALMRLKESGRIPGFYGRLGDLGAIDEKYDVAISTACARLDYI  646 (1293)
T ss_pred             hhHHHHHHHHHHHcCCCCccccccccccccchHHHHHHHHhccccceE
Confidence            443222222                 1222334 45788777666654

>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=98.65  E-value=0.00044  Score=81.17  Aligned_cols=254  Identities=15%  Similarity=0.260  Sum_probs=133.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 046695          311 NKVKALMEELRITKEKLMLSEAEIASLKQEVE---SNRSEKIQTLQNQLQLAQKDIATWKSKLNSERKEVSKLQERIKSL  387 (604)
Q Consensus       311 ~kl~~L~eEL~~~~eeL~~se~eI~~Lk~EL~---sl~~~kieqLq~eLe~~q~eie~i~~kLE~e~~ei~~LqeeI~eL  387 (604)
                      ..++....++......+..+...|..+...+.   .-+..+++.++.+|+.+..+.+.-...++.-..+...|+-++..+
T Consensus       748 e~v~e~~~~Ike~~~~~k~~~~~i~~lE~~~~d~~~~re~rlkdl~keik~~k~~~e~~~~~~ek~~~e~e~l~lE~e~l  827 (1174)
T KOG0933|consen  748 EEVEESEQQIKEKERALKKCEDKISTLEKKMKDAKANRERRLKDLEKEIKTAKQRAEESSKELEKRENEYERLQLEHEEL  827 (1174)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444444444444445555544444331   123345666777776666666666555555555555555555555


Q ss_pred             HhhhhhHHHHHHHHHHHHHHHHhhhchHHHhHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHH
Q 046695          388 KTSLSDRDHEVRDLKMAVSDAEQKIFPEKAQIKAEILGLYEEKACLVEQLREWESRGRSLEDELRIIKTQKTELEERIVG  467 (604)
Q Consensus       388 k~qlq~leeeI~eLk~~l~d~eekls~eKa~l~~ei~~LqEk~~sLe~eL~ele~~i~sLe~eIkql~~E~~e~e~~le~  467 (604)
                      +..+...+..+..++..++.+...+..    +.+.+......+.....++......++....+|..+-...   + .+..
T Consensus       828 ~~e~~~~k~~l~~~~~~~~~l~~e~~~----l~~kv~~~~~~~~~~~~el~~~k~k~~~~dt~i~~~~~~~---e-~~~~  899 (1174)
T KOG0933|consen  828 EKEISSLKQQLEQLEKQISSLKSELGN----LEAKVDKVEKDVKKAQAELKDQKAKQRDIDTEISGLLTSQ---E-KCLS  899 (1174)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHhHHhHHHHHHHHHHHHHHHHHhhhHHHhhhhhHH---H-HHHH
Confidence            544444444444444444433333322    2222222222233333333332222223333332222222   2 3444


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh------------------------HHHHHHHHHHHHHHHHH
Q 046695          468 EIEQLKASIAERDKHIENLNRSLDSLKAERDRLESDVIS------------------------RDDRMDQMEKHLQQLHM  523 (604)
Q Consensus       468 eIs~lk~el~e~~~~Le~L~~ek~~Le~el~~Leqe~~s------------------------~r~~I~emE~~L~qLr~  523 (604)
                      +++....++..+..++.-+..+......++..+.+++.=                        .++++..|......|++
T Consensus       900 e~~~~~l~~kkle~e~~~~~~e~~~~~k~v~~l~~k~~wi~~ek~~fgk~gt~yDf~~~~p~~are~l~~Lq~k~~~l~k  979 (1174)
T KOG0933|consen  900 EKSDGELERKKLEHEVTKLESEKANARKEVEKLLKKHEWIGDEKRLFGKKGTDYDFESYDPHEAREELKKLQEKKEKLEK  979 (1174)
T ss_pred             HhhcccchHHHHHhHHHHhhhhHHHHHHHHHHHHHhccchhHHHHhhcCCCCccccccCCHhHHHHHHHHhhHHHHHHHh
Confidence            444455555555555555555555555555555544432                        24444444444444444


Q ss_pred             HH-HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHH
Q 046695          524 EH-TELIKGAEDAHRMVGELRLKAKELEEEIEKQRVVILEGAEEKREAIR  572 (604)
Q Consensus       524 E~-e~le~~l~elk~kl~ELK~rv~eLeEeve~qk~~i~~~aEeKreAIr  572 (604)
                      -. -....-+...+.+.+.|+.+..-++.--.+.+.+|..+-+.||+++-
T Consensus       980 ~vn~~~m~mle~~E~~~~~lk~k~~~Ie~Dk~kI~ktI~~lDe~k~~~L~ 1029 (1174)
T KOG0933|consen  980 TVNPKNMDMLERAEEKEAALKTKKEIIEKDKSKIKKTIEKLDEKKREELN 1029 (1174)
T ss_pred             hcCHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence            32 12334677888999999999999999999999999999999998753

>PHA02562 46 endonuclease subunit; Provisional

Probab=98.64  E-value=9.6e-05  Score=83.30  Aligned_cols=106  Identities=14%  Similarity=0.279  Sum_probs=72.0

Q ss_pred             HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Q 046695          427 YEEKACLVEQLREWESRGRSLEDELRIIKTQKTELEERIVGEIEQLKASIAERDKHIENLNRSLDSLKAERDRLESDVIS  506 (604)
Q Consensus       427 qEk~~sLe~eL~ele~~i~sLe~eIkql~~E~~e~e~~le~eIs~lk~el~e~~~~Le~L~~ek~~Le~el~~Leqe~~s  506 (604)
                      -.++..|.+.+.+++.++..+...+..++....... .+...+..+...+......|..+..++..++.++..|......
T Consensus       298 ~~~~~~l~d~i~~l~~~l~~l~~~i~~~~~~~~~~~-~~~~~i~el~~~i~~~~~~i~~~~~~~~~l~~ei~~l~~~~~~  376 (562)
T PHA02562        298 PDRITKIKDKLKELQHSLEKLDTAIDELEEIMDEFN-EQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVD  376 (562)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Confidence            345555555666666666666666665554443334 5666777777777777777777777788888888888877777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 046695          507 RDDRMDQMEKHLQQLHMEHTELIKGAE  533 (604)
Q Consensus       507 ~r~~I~emE~~L~qLr~E~e~le~~l~  533 (604)
                      ....+.++..+|..+..++.++.....
T Consensus       377 ~~~~l~~l~~~l~~~~~~~~~~~ke~~  403 (562)
T PHA02562        377 NAEELAKLQDELDKIVKTKSELVKEKY  403 (562)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            777777777777777777776665543

>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function

Probab=98.62  E-value=0.0008  Score=76.16  Aligned_cols=13  Identities=31%  Similarity=0.353  Sum_probs=5.0

Q ss_pred             HHHHHHHHHHHHH
Q 046695          329 LSEAEIASLKQEV  341 (604)
Q Consensus       329 ~se~eI~~Lk~EL  341 (604)
                      .+..+|..++..+
T Consensus       176 ~L~~Ei~~lke~l  188 (522)
T PF05701_consen  176 ELSKEIIALKESL  188 (522)
T ss_pred             HHHHHHHHHHHHH
Confidence            3333333333333

Several sequences in this family are described as being myosin heavy chain-like.

>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]

Probab=98.61  E-value=0.0013  Score=75.49  Aligned_cols=164  Identities=17%  Similarity=0.209  Sum_probs=116.7

Q ss_pred             HHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhchHHHh---HHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh
Q 046695          381 QERIKSLKTSLSDRDHEVRDLKMAVSDAEQKIFPEKAQ---IKAEILGLYEEKACLVEQLREWESRGRSLEDELRIIKTQ  457 (604)
Q Consensus       381 qeeI~eLk~qlq~leeeI~eLk~~l~d~eekls~eKa~---l~~ei~~LqEk~~sLe~eL~ele~~i~sLe~eIkql~~E  457 (604)
                      .+.+.-+++-...+++...+|+..-..+++.-++.++-   +..+.++..+.+.-+..+|..+.+.-...-..+.+...=
T Consensus       241 ~q~ltp~rk~~s~i~E~d~~lq~sak~ieE~m~qlk~kns~L~~ElSqkeelVk~~qeeLd~lkqt~t~a~gdseqatky  320 (1265)
T KOG0976|consen  241 KQTLTPLRKTCSMIEEQDMDLQASAKEIEEKMRQLKAKNSVLGDELSQKEELVKELQEELDTLKQTRTRADGDSEQATKY  320 (1265)
T ss_pred             HhhhhhHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHH
Confidence            45556666666667777777766555555555444433   777777777777777777766555544333344443332


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 046695          458 KTELEERIVGEIEQLKASIAERDKHIENLNRSLDSLKAERDRLESDVISRDDRMDQMEKHLQQLHMEHTELIKGAEDAHR  537 (604)
Q Consensus       458 ~~e~e~~le~eIs~lk~el~e~~~~Le~L~~ek~~Le~el~~Leqe~~s~r~~I~emE~~L~qLr~E~e~le~~l~elk~  537 (604)
                      +-.+-+++..+|..+..++-+.+...+.+...+..|+.+-+.+..++.++....+..+..+..|.....+.+.+++.++.
T Consensus       321 lh~enmkltrqkadirc~LlEarrk~egfddk~~eLEKkrd~al~dvr~i~e~k~nve~elqsL~~l~aerqeQidelKn  400 (1265)
T KOG0976|consen  321 LHLENMKLTRQKADIRCALLEARRKAEGFDDKLNELEKKRDMALMDVRSIQEKKENVEEELQSLLELQAERQEQIDELKN  400 (1265)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            22222368889999999999999999999999999999999999999999998888888888888888888887777777


Q ss_pred             HHHHHHH
Q 046695          538 MVGELRL  544 (604)
Q Consensus       538 kl~ELK~  544 (604)
                      .+-.+..
T Consensus       401 ~if~~e~  407 (1265)
T KOG0976|consen  401 HIFRLEQ  407 (1265)
T ss_pred             hhhhhhh
Confidence            7666553

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope

Probab=98.56  E-value=0.00026  Score=74.24  Aligned_cols=69  Identities=19%  Similarity=0.282  Sum_probs=37.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH----hHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 046695          464 RIVGEIEQLKASIAERDKHIENLNRSLDSLKAERDRLESDVI----SRDDRMDQMEKHLQQLHMEHTELIKGA  532 (604)
Q Consensus       464 ~le~eIs~lk~el~e~~~~Le~L~~ek~~Le~el~~Leqe~~----s~r~~I~emE~~L~qLr~E~e~le~~l  532 (604)
                      .+..++..++..+..+...|..+......|+..+..++..+.    .....|..++..|.+++.++.......
T Consensus       213 ~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~~~~~~~~~~i~~le~el~~l~~~~~~~~~ey  285 (312)
T PF00038_consen  213 SAKEELKELRRQIQSLQAELESLRAKNASLERQLRELEQRLDEEREEYQAEIAELEEELAELREEMARQLREY  285 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHH
Confidence            345555555566666666666666666666666655543333    344455555555555555554444433

They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....

>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]

Probab=98.53  E-value=0.00022  Score=84.50  Aligned_cols=175  Identities=17%  Similarity=0.234  Sum_probs=83.5

Q ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHH-HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 046695          419 IKAEILGLYEEKACLVEQLREWESRGRSLEDEL-RIIKTQKTELEERIVGEIEQLKASIAERDKHIENLNRSLDSLKAER  497 (604)
Q Consensus       419 l~~ei~~LqEk~~sLe~eL~ele~~i~sLe~eI-kql~~E~~e~e~~le~eIs~lk~el~e~~~~Le~L~~ek~~Le~el  497 (604)
                      +..++..-.+.+..++....+++++|..++.+. ..+..++   . +.+.+++.|+.++..+..       ....|..+.
T Consensus       356 ~~~~~~~~~n~i~~~k~~~d~l~k~I~~~~~~~~~~~~~~~---~-e~e~k~~~L~~evek~e~-------~~~~L~~e~  424 (1074)
T KOG0250|consen  356 LKEEIREIENSIRKLKKEVDRLEKQIADLEKQTNNELGSEL---E-ERENKLEQLKKEVEKLEE-------QINSLREEL  424 (1074)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhH---H-HHHHHHHHHHHHHHHHHH-------HHHHHHHHH
Confidence            334444444444445555554444444444444 2222222   2 333344444444444333       334444444


Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHH----HHHHHHHHHHHHHHHHHHHHHHHhh-----------hh
Q 046695          498 DRLESDVISRDDRMDQMEKHLQQLHMEHTELIKGAEDA----HRMVGELRLKAKELEEEIEKQRVVI-----------LE  562 (604)
Q Consensus       498 ~~Leqe~~s~r~~I~emE~~L~qLr~E~e~le~~l~el----k~kl~ELK~rv~eLeEeve~qk~~i-----------~~  562 (604)
                      +.+..++....+.....+..+.++++.+......+..+    .++++-.--.+.+|-..|++.+..-           .-
T Consensus       425 ~~~~~~~~~~~ee~~~i~~~i~~l~k~i~~~~~~l~~lk~~k~dkvs~FG~~m~~lL~~I~r~~~~f~~~P~GPlG~~Vt  504 (1074)
T KOG0250|consen  425 NEVKEKAKEEEEEKEHIEGEILQLRKKIENISEELKDLKKTKTDKVSAFGPNMPQLLRAIERRKRRFQTPPKGPLGKYVT  504 (1074)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhcchhhHHHHHHHHHHHhcCCCCCCCCccceeE
Confidence            44444444444444444444444444444444333333    3455555567777777777776651           11


Q ss_pred             hhhhHHHHHHHHhhh------HHHHHhhHHHHHHHHhcCC----CcccccCC
Q 046695          563 GAEEKREAIRQLCFS------LEHYRSGYISLRKAVIGHK----GVAVLTSC  604 (604)
Q Consensus       563 ~aEeKreAIrQlcfs------lehyR~~y~~L~~~~~gh~----~~~~~~~~  604 (604)
                      +-++|-+-+=+-|+.      |=|-+..-.-||.+|.-|+    ||+|..||
T Consensus       505 l~~~KWa~aIE~~L~n~lnaFiv~sh~D~~~Lr~i~~~~~~~~~~ptIvvs~  556 (1074)
T KOG0250|consen  505 LKEPKWALAIERCLGNLLNAFIVTSHKDARILRAIMRRLKIPGNRPTIVVSS  556 (1074)
T ss_pred             ecCcHHHHHHHHHHHHhhhhheeCCHhhHHHHHHHHHHcCCCCCCCcEEEec
Confidence            234466655566664      1233444556777666443    45555554

>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]

Probab=98.51  E-value=0.0001  Score=82.77  Aligned_cols=21  Identities=19%  Similarity=0.142  Sum_probs=14.7

Q ss_pred             HHHhHHHHHHHHHHHHHHHHH
Q 046695          422 EILGLYEEKACLVEQLREWES  442 (604)
Q Consensus       422 ei~~LqEk~~sLe~eL~ele~  442 (604)
                      -...+++++..|..+|.|+..
T Consensus       198 lr~d~~n~~q~Lleel~f~~~  218 (546)
T KOG0977|consen  198 LRVDLQNRVQTLLEELAFLKR  218 (546)
T ss_pred             HHHHHHhHHHHHHHHHHHHHh
Confidence            335677777778888877773

>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=98.49  E-value=0.00086  Score=79.91  Aligned_cols=240  Identities=15%  Similarity=0.220  Sum_probs=141.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhh
Q 046695          312 KVKALMEELRITKEKLMLSEAEIASLKQEVESNRSEKIQTLQNQLQLAQKDIATWKSKLNSERKEVSKLQERIKSLKTSL  391 (604)
Q Consensus       312 kl~~L~eEL~~~~eeL~~se~eI~~Lk~EL~sl~~~kieqLq~eLe~~q~eie~i~~kLE~e~~ei~~LqeeI~eLk~ql  391 (604)
                      ++....+++....+.|......+....++....-......+......+.+....+..++.....+-.+.++.++.+...+
T Consensus       335 ki~~~~~~~~~~~e~lk~~~ek~~~e~~~~~~k~e~~~~~~~e~~~~~kn~~~~~k~~~~~~e~~~vk~~E~lK~~~~k~  414 (1293)
T KOG0996|consen  335 KIAEMQEELEKIEEGLKDENEKFDIESNEEVEKNEAVKKEIKERAKELKNKFESLKKKFQDLEREDVKREEKLKRLTSKI  414 (1293)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444444444444444444433332222102223345666666666777777777777777777778888888777


Q ss_pred             hhHHHHHHHHHHHHHHHHhhhchHHHhHHHHHHhHHHHHHHHHHHHHHHHHhhh-----------hHHHHHHHHHHhhhH
Q 046695          392 SDRDHEVRDLKMAVSDAEQKIFPEKAQIKAEILGLYEEKACLVEQLREWESRGR-----------SLEDELRIIKTQKTE  460 (604)
Q Consensus       392 q~leeeI~eLk~~l~d~eekls~eKa~l~~ei~~LqEk~~sLe~eL~ele~~i~-----------sLe~eIkql~~E~~e  460 (604)
                      ..++.++.+......+++.....    .+..+.+.+.++..|...+...++.+.           -+.+++..++.++  
T Consensus       415 kKleke~ek~~~~~~e~e~~pe~----~~~~i~~~~~ei~~L~~~~~~~~~~l~e~~~~l~~~t~~~~~e~~~~ekel--  488 (1293)
T KOG0996|consen  415 KKLEKEIEKARRKKSELEKAPEK----ARIEIQKCQTEIEQLEELLEKEERELDEILDSLKQETEGIREEIEKLEKEL--  488 (1293)
T ss_pred             HHHHHHHHHHHhhHHHHHhCchh----hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHH--
Confidence            77777777776666655543321    333444444444444443333333322           3334555555554  


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHh-------hHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 046695          461 LEERIVGEIEQLKASIAERDKHIENLNR-------SLDSLKAERDRLESDVISRDDRMDQMEKHLQQLHMEHTELIKGAE  533 (604)
Q Consensus       461 ~e~~le~eIs~lk~el~e~~~~Le~L~~-------ek~~Le~el~~Leqe~~s~r~~I~emE~~L~qLr~E~e~le~~l~  533 (604)
                       . ....++...+.+++....+|..|..       ..+.++..+......+.+....+..+...|..++.++.+.+..+.
T Consensus       489 -~-~~~~~~n~~~~e~~vaesel~~L~~~~~~~~~~~e~lk~~L~~~~~~~~e~~~~l~~~k~~l~~~k~e~~~~~k~l~  566 (1293)
T KOG0996|consen  489 -M-PLLKQVNEARSELDVAESELDILLSRHETGLKKVEELKGKLLASSESLKEKKTELDDLKEELPSLKQELKEKEKELP  566 (1293)
T ss_pred             -H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhHH
Confidence             2 3334555555555555555555444       455555555566666666677777777777778888888888888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 046695          534 DAHRMVGELRLKAKELEEEIEKQRVV  559 (604)
Q Consensus       534 elk~kl~ELK~rv~eLeEeve~qk~~  559 (604)
                      .++.....++.++..+..++++.+..
T Consensus       567 ~~~~e~~~~~~~~~~~rqrveE~ks~  592 (1293)
T KOG0996|consen  567 KLRKEERNLKSQLNKLRQRVEEAKSS  592 (1293)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88888888888888888888777763

>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=98.49  E-value=0.00066  Score=79.75  Aligned_cols=152  Identities=22%  Similarity=0.350  Sum_probs=85.5

Q ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH---
Q 046695          419 IKAEILGLYEEKACLVEQLREWESRGRSLEDELRIIKTQKTELEERIVGEIEQLKASIAERDKHIENLNRSLDSLKA---  495 (604)
Q Consensus       419 l~~ei~~LqEk~~sLe~eL~ele~~i~sLe~eIkql~~E~~e~e~~le~eIs~lk~el~e~~~~Le~L~~ek~~Le~---  495 (604)
                      +..+...+...+.+.+..+..+...+.++..++-.+...+.    ..+.+..++..++......+-..+.+...+-.   
T Consensus       820 l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~----~~~~~~~~~~~el~~~k~k~~~~dt~i~~~~~~~e  895 (1174)
T KOG0933|consen  820 LQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVD----KVEKDVKKAQAELKDQKAKQRDIDTEISGLLTSQE  895 (1174)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hHHhHHHHHHHHHHHHHHHHHhhhHHHhhhhhHHH
Confidence            45555556666666666666666666666666665555552    23333333333333333333333333322222   


Q ss_pred             -----------HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH-----------------hHHHHHHHHHHHHHHHH
Q 046695          496 -----------ERDRLESDVISRDDRMDQMEKHLQQLHMEHTELIK-----------------GAEDAHRMVGELRLKAK  547 (604)
Q Consensus       496 -----------el~~Leqe~~s~r~~I~emE~~L~qLr~E~e~le~-----------------~l~elk~kl~ELK~rv~  547 (604)
                                 ++..|..++..+...-..+...+..|..++.=+..                 .-+.++.++.+|..+..
T Consensus       896 ~~~~e~~~~~l~~kkle~e~~~~~~e~~~~~k~v~~l~~k~~wi~~ek~~fgk~gt~yDf~~~~p~~are~l~~Lq~k~~  975 (1174)
T KOG0933|consen  896 KCLSEKSDGELERKKLEHEVTKLESEKANARKEVEKLLKKHEWIGDEKRLFGKKGTDYDFESYDPHEAREELKKLQEKKE  975 (1174)
T ss_pred             HHHHHhhcccchHHHHHhHHHHhhhhHHHHHHHHHHHHHhccchhHHHHhhcCCCCccccccCCHhHHHHHHHHhhHHHH
Confidence                       33333333333333333333333333333333321                 22346888999999999


Q ss_pred             HHHHHHHHHHHhhhhhhhhHHHHHHHH
Q 046695          548 ELEEEIEKQRVVILEGAEEKREAIRQL  574 (604)
Q Consensus       548 eLeEeve~qk~~i~~~aEeKreAIrQl  574 (604)
                      .|+..+-.+....+|.+|+|-.|++--
T Consensus       976 ~l~k~vn~~~m~mle~~E~~~~~lk~k 1002 (1174)
T KOG0933|consen  976 KLEKTVNPKNMDMLERAEEKEAALKTK 1002 (1174)
T ss_pred             HHHhhcCHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999998887643

>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]

Probab=98.48  E-value=0.0019  Score=75.85  Aligned_cols=338  Identities=18%  Similarity=0.203  Sum_probs=183.5

Q ss_pred             HHHHHHHhhHHHHHHHHHhhhhcHHHHHHHHHHHhhhccccchhhhhhccCChhhhhhhhchHHHHhhhhccCCcchhhh
Q 046695          231 ALFARIVGYEKKLRLANEKIHISNEEILRLKIELQKYNSSETNNYLQADFGSPAEINVNMWDAELQEGINGLETPSLDLD  310 (604)
Q Consensus       231 ~l~~~~~~~~~el~~~n~~~~~~e~ei~~lk~ele~~~~~~~~~~~~~~~~~~~e~~~~~~~~~Lq~~I~eLE~el~el~  310 (604)
                      ....++..+++.|..+...+...+.+|..|...++++..+ .......       +.      .+...++.+.++..-++
T Consensus       675 ~~~~~~~~l~~~L~~~r~~i~~~~~~i~q~~~~~qk~e~~-~~~~~~~-------~~------~l~~e~~~~k~e~~~v~  740 (1200)
T KOG0964|consen  675 ESRSELKELQESLDEVRNEIEDIDQKIDQLNNNMQKVEND-RNAFKRE-------HE------KLKRELNTIKGEKSRVQ  740 (1200)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH-HHHHHHH-------HH------HHHHHHHHhhhHHHHHH
Confidence            3446666777777777777888888888888888887443 2222211       11      33444444555555555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHh
Q 046695          311 NKVKALMEELRITKEKLMLSEAEIASLKQEVESNR-SEKIQTLQNQLQLAQKDIATWKSKLNSERKEVSKLQERIKSLKT  389 (604)
Q Consensus       311 ~kl~~L~eEL~~~~eeL~~se~eI~~Lk~EL~sl~-~~kieqLq~eLe~~q~eie~i~~kLE~e~~ei~~LqeeI~eLk~  389 (604)
                      .-+......|..++..+...+...+.++.++.+-. ..---.-.++++....+|..+..++.....+...+..++..+..
T Consensus       741 ~s~~~k~~~Le~i~~~l~~~~~~~~~~e~el~sel~sqLt~ee~e~l~kLn~eI~~l~~kl~~~~~er~~~~~rk~~le~  820 (1200)
T KOG0964|consen  741 ESLEPKGKELEEIKTSLHKLESQSNYFESELGSELFSQLTPEELERLSKLNKEINKLSVKLRALREERIDIETRKTALEA  820 (1200)
T ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHhhcCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55555555555566666666666666666664421 11122334556666666677777777677777777777777776


Q ss_pred             hhhh-HHHHHHHHHHHHHHHHhhhch-HHHhHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHH
Q 046695          390 SLSD-RDHEVRDLKMAVSDAEQKIFP-EKAQIKAEILGLYEEKACLVEQLREWESRGRSLEDELRIIKTQKTELEERIVG  467 (604)
Q Consensus       390 qlq~-leeeI~eLk~~l~d~eekls~-eKa~l~~ei~~LqEk~~sLe~eL~ele~~i~sLe~eIkql~~E~~e~e~~le~  467 (604)
                      .+.. +.-++.+|.+.+.++...=.. +-...+.++.....++.....++..++..+....+.|..+...+..+. .++.
T Consensus       821 ~l~~kL~~r~~~l~~ei~~~~d~~~~~el~~~~~el~~~~~~~e~~~~el~~l~~~i~~~~a~~~~~~~~lE~~~-~lek  899 (1200)
T KOG0964|consen  821 NLNTKLYKRVNELEQEIGDLNDSSRRSELELEKSELESEEKRVEAAILELKTLQDSIDKKKAEIKEIKKELEKAK-NLEK  899 (1200)
T ss_pred             HHHHHHHhhhhHHHHHhhhcccccchhhhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Confidence            6543 244555565555544322111 111144555555555555566666666666666666666666652222 2222


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhH------------HHHHHHHHHHHHHHHHHHHHHH------
Q 046695          468 EIEQLKASIAERDKHIENLNRSLDSLKAERDRLESDVISR------------DDRMDQMEKHLQQLHMEHTELI------  529 (604)
Q Consensus       468 eIs~lk~el~e~~~~Le~L~~ek~~Le~el~~Leqe~~s~------------r~~I~emE~~L~qLr~E~e~le------  529 (604)
                      +....    ...+..++-+...+..|-.+..++.+.+..+            +...+++-+.|.....+..+..      
T Consensus       900 ~~~~~----~~~dKe~Ek~~~rk~~Ll~KreE~~ekIr~lG~Lp~daf~ky~~~~~~el~kkL~~~neelk~ys~VNKkA  975 (1200)
T KOG0964|consen  900 EKKDN----INFDKELEKLVRRKHMLLKKREECCEKIRELGVLPEDAFEKYQDKKSKELMKKLHRCNEELKGYSNVNKKA  975 (1200)
T ss_pred             HHhhh----hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHhccCCHHHHHHHHHHHHHHHhhcchhhHHH
Confidence            22221    3333556655555555555444433333111            1123334444444444433332      


Q ss_pred             -HhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhH--HHHHhhHHHH
Q 046695          530 -KGAEDAHRMVGELRLKAKELEEEIEKQRVVILEGAEEKREAIRQLCFSL--EHYRSGYISL  588 (604)
Q Consensus       530 -~~l~elk~kl~ELK~rv~eLeEeve~qk~~i~~~aEeKreAIrQlcfsl--ehyR~~y~~L  588 (604)
                       .++.++-..-.+|..+..+|..=-+.-...|--+---|.+|| ++-|..  +||+.-|.+|
T Consensus       976 ldQf~nfseQre~L~~R~eELd~s~~sI~eLi~vLdqrK~eai-~~TFkqV~knFsevF~~L 1036 (1200)
T KOG0964|consen  976 LDQFVNFSEQRESLKKRQEELDRSKDSILELITVLDQRKYEAI-DLTFKQVKKNFSEVFSRL 1036 (1200)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHhhHHHH-HHHHHHHHHHHHHHHHHh
Confidence             233444444444444444444444444555566677899999 566664  7888888877

>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins

Probab=98.45  E-value=0.0052  Score=76.03  Aligned_cols=65  Identities=20%  Similarity=0.420  Sum_probs=35.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 046695          464 RIVGEIEQLKASIAERDKHIENLNRSLDSLKAERDRLESDVISRDDRMDQMEKHLQQLHMEHTEL  528 (604)
Q Consensus       464 ~le~eIs~lk~el~e~~~~Le~L~~ek~~Le~el~~Leqe~~s~r~~I~emE~~L~qLr~E~e~l  528 (604)
                      .++.++..+...+.........+.+........+..+..++......+...+..+..++.++..+
T Consensus       604 ~L~~~l~~~~~~l~~~~~~~~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  668 (1201)
T PF12128_consen  604 ELRERLEQAEDQLQSAEERQEELEKQLKQINKKIEELKREITQAEQELKQAEQDLQRLKNEREQL  668 (1201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            45555555655655555555555555555555555555555555555555555555544444333

>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]

Probab=98.44  E-value=0.00052  Score=77.22  Aligned_cols=118  Identities=17%  Similarity=0.276  Sum_probs=69.4

Q ss_pred             HHHhhhhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 046695          294 ELQEGINGLETPSLDLDNKVKALMEELRITKEKLMLSEAEIASLKQEVESNRSEKIQTLQNQLQLAQKDIATWKSKLNSE  373 (604)
Q Consensus       294 ~Lq~~I~eLE~el~el~~kl~~L~eEL~~~~eeL~~se~eI~~Lk~EL~sl~~~kieqLq~eLe~~q~eie~i~~kLE~e  373 (604)
                      .+-..|.+......++..+|..+..++..+...+....+........+-.. ...+.+++.++..+.-++..+...+..+
T Consensus        96 ~ar~~l~e~~~~ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~-~~~l~~leAe~~~~krr~~~le~e~~~L  174 (546)
T KOG0977|consen   96 TARKLLDETARERAKLEIEITKLREELKELRKKLEKAEKERRGAREKLDDY-LSRLSELEAEINTLKRRIKALEDELKRL  174 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHH-hhhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence            555555555555566666666666666666666666655555555544433 4456666666666666666666666666


Q ss_pred             HHHHHHHHHHHHHHHhhhhhH-------HHHHHHHHHHHHHHHhhh
Q 046695          374 RKEVSKLQERIKSLKTSLSDR-------DHEVRDLKMAVSDAEQKI  412 (604)
Q Consensus       374 ~~ei~~LqeeI~eLk~qlq~l-------eeeI~eLk~~l~d~eekl  412 (604)
                      +.++..|...|+.++.++...       +..+.+|.+.+......+
T Consensus       175 k~en~rl~~~l~~~r~~ld~Etllr~d~~n~~q~Lleel~f~~~~h  220 (546)
T KOG0977|consen  175 KAENSRLREELARARKQLDDETLLRVDLQNRVQTLLEELAFLKRIH  220 (546)
T ss_pred             HHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcc
Confidence            666666666666666655443       445555555444444333

>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]

Probab=98.42  E-value=0.0013  Score=78.24  Aligned_cols=118  Identities=21%  Similarity=0.308  Sum_probs=59.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHH-HHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 046695          468 EIEQLKASIAERDKHIENLNRSLDSLKAERDRLESDVISRDDRMDQMEKHL-QQLHMEHTELIKGAEDAHRMVGELRLKA  546 (604)
Q Consensus       468 eIs~lk~el~e~~~~Le~L~~ek~~Le~el~~Leqe~~s~r~~I~emE~~L-~qLr~E~e~le~~l~elk~kl~ELK~rv  546 (604)
                      +|..+...++.+......+..+....+..+..++..+.-++..|..++.+. +.+..++.+++..+..+...+..+...+
T Consensus       338 Ei~~~r~~~~~~~re~~~~~~~~~~~~n~i~~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~  417 (1074)
T KOG0250|consen  338 EIEEARKDLDDLRREVNDLKEEIREIENSIRKLKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQI  417 (1074)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444444444444444444444444444444444444444444444444 4444444555555555555555555555


Q ss_pred             HHHHHHHHHHHHhhhhhhhhH---HHHHHHHhhhHHHHHhhH
Q 046695          547 KELEEEIEKQRVVILEGAEEK---REAIRQLCFSLEHYRSGY  585 (604)
Q Consensus       547 ~eLeEeve~qk~~i~~~aEeK---reAIrQlcfslehyR~~y  585 (604)
                      +.|.++....+..+.+..|+|   ..-|+||--+++.+-...
T Consensus       418 ~~L~~e~~~~~~~~~~~~ee~~~i~~~i~~l~k~i~~~~~~l  459 (1074)
T KOG0250|consen  418 NSLREELNEVKEKAKEEEEEKEHIEGEILQLRKKIENISEEL  459 (1074)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            555555555555555555555   133666666666555333

>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]

Probab=98.36  E-value=0.0094  Score=69.64  Aligned_cols=170  Identities=13%  Similarity=0.158  Sum_probs=103.8

Q ss_pred             HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhchHHHhHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh
Q 046695          379 KLQERIKSLKTSLSDRDHEVRDLKMAVSDAEQKIFPEKAQIKAEILGLYEEKACLVEQLREWESRGRSLEDELRIIKTQK  458 (604)
Q Consensus       379 ~LqeeI~eLk~qlq~leeeI~eLk~~l~d~eekls~eKa~l~~ei~~LqEk~~sLe~eL~ele~~i~sLe~eIkql~~E~  458 (604)
                      ....++.+|....+.+..++..++..+.++.++++..-.. -.=+.+|.+++=.|+.+...++.++..++ .++++..++
T Consensus       407 ~k~sE~~eL~r~kE~Lsr~~d~aEs~iadlkEQVDAAlGA-E~MV~qLtdknlnlEekVklLeetv~dlE-alee~~EQL  484 (1243)
T KOG0971|consen  407 KKNSELEELRRQKERLSRELDQAESTIADLKEQVDAALGA-EEMVEQLTDKNLNLEEKVKLLEETVGDLE-ALEEMNEQL  484 (1243)
T ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcH-HHHHHHHHhhccCHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence            3334444444444444555555555555555555332221 12234555555566666665555555554 344444454


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHh-------
Q 046695          459 TELEERIVGEIEQLKASIAERDKHIENLNRSLDSLKAERDRLESDVISRDDRMDQMEKHLQQLHMEHTELIKG-------  531 (604)
Q Consensus       459 ~e~e~~le~eIs~lk~el~e~~~~Le~L~~ek~~Le~el~~Leqe~~s~r~~I~emE~~L~qLr~E~e~le~~-------  531 (604)
                         .+........|..+|+.+.-.+..++.+++.-.+-+-...+-+...|..+..+.++|..+..+-......       
T Consensus       485 ---~Esn~ele~DLreEld~~~g~~kel~~r~~aaqet~yDrdqTI~KfRelva~Lqdqlqe~~dq~~Sseees~q~~s~  561 (1243)
T KOG0971|consen  485 ---QESNRELELDLREELDMAKGARKELQKRVEAAQETVYDRDQTIKKFRELVAHLQDQLQELTDQQESSEEESQQPPSV  561 (1243)
T ss_pred             ---HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhcCCCCC
Confidence               2123334455667777776777888888999999999999999999999999999999988866544432       


Q ss_pred             ---HHHHHHHHHHHHHHHHHHHHHH
Q 046695          532 ---AEDAHRMVGELRLKAKELEEEI  553 (604)
Q Consensus       532 ---l~elk~kl~ELK~rv~eLeEev  553 (604)
                         ....+.++++.|.-..+++-.+
T Consensus       562 ~~et~dyk~~fa~skayaraie~Ql  586 (1243)
T KOG0971|consen  562 DPETFDYKIKFAESKAYARAIEMQL  586 (1243)
T ss_pred             chhhhHHHHHHHHhHHHHHHHHHHH
Confidence               2345666777776666665555

>PRK04778 septation ring formation regulator EzrA; Provisional

Probab=98.36  E-value=0.0028  Score=72.49  Aligned_cols=64  Identities=16%  Similarity=0.204  Sum_probs=28.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhh
Q 046695          348 KIQTLQNQLQLAQKDIATWKSKLNSERKEVSKLQERIKSLKTSLSDRDHEVRDLKMAVSDAEQK  411 (604)
Q Consensus       348 kieqLq~eLe~~q~eie~i~~kLE~e~~ei~~LqeeI~eLk~qlq~leeeI~eLk~~l~d~eek  411 (604)
                      .++.....+.....+|+.+-..++.+..-..........+...+..+......|...+....+.
T Consensus       276 ~l~~~~~~~~~i~~~Id~Lyd~lekE~~A~~~vek~~~~l~~~l~~~~e~~~~l~~Ei~~l~~s  339 (569)
T PRK04778        276 DLDEAEEKNEEIQERIDQLYDILEREVKARKYVEKNSDTLPDFLEHAKEQNKELKEEIDRVKQS  339 (569)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            3444444444444455544444544444444444444444444444444444444444443333

>PHA02562 46 endonuclease subunit; Provisional

Probab=98.32  E-value=0.00087  Score=75.62  Aligned_cols=62  Identities=18%  Similarity=0.240  Sum_probs=27.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 046695          464 RIVGEIEQLKASIAERDKHIENLNRSLDSLKAERDRLESDVISRDDRMDQMEKHLQQLHMEH  525 (604)
Q Consensus       464 ~le~eIs~lk~el~e~~~~Le~L~~ek~~Le~el~~Leqe~~s~r~~I~emE~~L~qLr~E~  525 (604)
                      .++..|...+..+..+...+..+..++..++.....+..++......+.++...+.++.++.
T Consensus       341 el~~~i~~~~~~i~~~~~~~~~l~~ei~~l~~~~~~~~~~l~~l~~~l~~~~~~~~~~~ke~  402 (562)
T PHA02562        341 ELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDNAEELAKLQDELDKIVKTKSELVKEK  402 (562)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444444444444444444444444444444444444444444444444444444443

>PRK11637 AmiB activator; Provisional

Probab=98.32  E-value=0.00063  Score=74.97  Aligned_cols=53  Identities=13%  Similarity=0.271  Sum_probs=23.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Q 046695          349 IQTLQNQLQLAQKDIATWKSKLNSERKEVSKLQERIKSLKTSLSDRDHEVRDL  401 (604)
Q Consensus       349 ieqLq~eLe~~q~eie~i~~kLE~e~~ei~~LqeeI~eLk~qlq~leeeI~eL  401 (604)
                      +..+...|..+...+..++.++.....++..++.+|..+..++......+...
T Consensus        77 l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~~r  129 (428)
T PRK11637         77 LKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLAAQ  129 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444444444444444444444444444444444444444444444443

>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []

Probab=98.32  E-value=0.011  Score=68.94  Aligned_cols=89  Identities=21%  Similarity=0.212  Sum_probs=53.7

Q ss_pred             HHHHHHhhhHHHHHHHHhhhhhhhhhhhhhhhcccCCCChHHHHHHHHhhHHHHHHHHHhhhhcHHHHHHHHHHHhhhcc
Q 046695          190 GLQRKVNELETELREAKEKLHSQEERIADESMKGAKNENPEALFARIVGYEKKLRLANEKIHISNEEILRLKIELQKYNS  269 (604)
Q Consensus       190 ~l~~~~~~le~e~~~~~~k~~~~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~el~~~n~~~~~~e~ei~~lk~ele~~~~  269 (604)
                      .+..||.+|+.|+..++..+.-....|=                    .+.......++.+..++-+...|+.++-.|..
T Consensus        31 ~~~~~i~~l~~elk~~~~~~~~~~~e~~--------------------rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~K~   90 (717)
T PF09730_consen   31 YLQQRILELENELKQLRQELSNVQAENE--------------------RLSQLNQELRKECEDLELERKRLREEIKEYKF   90 (717)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6778899999999866666644332221                    22222233344455566777777777766633


Q ss_pred             ccchhhhhhccCChhhhhhhhchHHHHhhhhccCCc
Q 046695          270 SETNNYLQADFGSPAEINVNMWDAELQEGINGLETP  305 (604)
Q Consensus       270 ~~~~~~~~~~~~~~~e~~~~~~~~~Lq~~I~eLE~e  305 (604)
                      - =...+++-+.|+.|--      -||++|..|+..
T Consensus        91 r-E~rll~dyselEeENi------slQKqvs~Lk~s  119 (717)
T PF09730_consen   91 R-EARLLQDYSELEEENI------SLQKQVSVLKQS  119 (717)
T ss_pred             H-HHHHhhhhHHHHHHHH------HHHHHHHHHHHh
Confidence            2 2235555667777766      777777777653

Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus

>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins

Probab=98.31  E-value=0.027  Score=69.91  Aligned_cols=25  Identities=28%  Similarity=0.399  Sum_probs=11.9

Q ss_pred             HHHHHHHHHhhhhcHHHHHHHHHHH
Q 046695          240 EKKLRLANEKIHISNEEILRLKIEL  264 (604)
Q Consensus       240 ~~el~~~n~~~~~~e~ei~~lk~el  264 (604)
                      ...|..++..+..+...|+.|...|
T Consensus       510 ~~~l~~~~~~~~~~~~~~~~l~~~L  534 (1201)
T PF12128_consen  510 EEELRQARRELEELRAQIAELQRQL  534 (1201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            3344444444444555555555444

>PF14915 CCDC144C: CCDC144C protein coiled-coil region

Probab=98.31  E-value=0.0062  Score=63.71  Aligned_cols=217  Identities=22%  Similarity=0.314  Sum_probs=143.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhhhH
Q 046695          315 ALMEELRITKEKLMLSEAEIASLKQEVESNRSEKIQTLQNQLQLAQKDIATWKSKLNSERKEVSKLQERIKSLKTSLSDR  394 (604)
Q Consensus       315 ~L~eEL~~~~eeL~~se~eI~~Lk~EL~sl~~~kieqLq~eLe~~q~eie~i~~kLE~e~~ei~~LqeeI~eLk~qlq~l  394 (604)
                      .+-+++.+++++...+.+.|. |+.+..   ...+-++.++|..+..+-..+.++|+.++.....|..+|..+-..+..+
T Consensus        28 ky~ediei~Kekn~~Lqk~lK-LneE~l---tkTi~qy~~QLn~L~aENt~L~SkLe~EKq~kerLEtEiES~rsRLaaA  103 (305)
T PF14915_consen   28 KYLEDIEILKEKNDDLQKSLK-LNEETL---TKTIFQYNGQLNVLKAENTMLNSKLEKEKQNKERLETEIESYRSRLAAA  103 (305)
T ss_pred             HHHHHHHHHHHHHHHHHHHHh-hhHHHH---HHHHHHHhhhHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence            455666666666666666664 333322   3468889999999998889999999999988888888888888777766


Q ss_pred             HHH-------HHHHHHHHHHHHhhhchHHHhHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHH
Q 046695          395 DHE-------VRDLKMAVSDAEQKIFPEKAQIKAEILGLYEEKACLVEQLREWESRGRSLEDELRIIKTQKTELEERIVG  467 (604)
Q Consensus       395 eee-------I~eLk~~l~d~eekls~eKa~l~~ei~~LqEk~~sLe~eL~ele~~i~sLe~eIkql~~E~~e~e~~le~  467 (604)
                      -..       -.+++-+|..+.......++.++..++.+.+....|-+.|...+....+|+.++.+....+.        
T Consensus       104 i~d~dqsq~skrdlelafqr~rdEw~~lqdkmn~d~S~lkd~ne~LsQqLskaesK~nsLe~elh~trdaLr--------  175 (305)
T PF14915_consen  104 IQDHDQSQTSKRDLELAFQRARDEWVRLQDKMNSDVSNLKDNNEILSQQLSKAESKFNSLEIELHHTRDALR--------  175 (305)
T ss_pred             HhhHHHHHhhHHHHHHHHHHHhhHHHHHHHHhcchHHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------
Confidence            222       23445556666655555666688889999999999999999888888888887777666652        


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHH-------HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 046695          468 EIEQLKASIAERDKHIENLNRSLDS-------LKAERDRLESDVISRDDRMDQMEKHLQQLHMEHTELIKGAEDAHRMVG  540 (604)
Q Consensus       468 eIs~lk~el~e~~~~Le~L~~ek~~-------Le~el~~Leqe~~s~r~~I~emE~~L~qLr~E~e~le~~l~elk~kl~  540 (604)
                                +..-.|+.+...+..       ++.-...-...+....+.=+.++..|.+++.+=-=|.+++++++.+..
T Consensus       176 ----------EKtL~lE~~QrdL~Qtq~q~KE~e~m~qne~~kv~k~~~Kqes~eERL~QlqsEN~LLrQQLddA~~K~~  245 (305)
T PF14915_consen  176 ----------EKTLALESVQRDLSQTQCQIKEIEHMYQNEQDKVNKYIGKQESLEERLSQLQSENMLLRQQLDDAHNKAD  245 (305)
T ss_pred             ----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                      222223333333333       333333333333444455567777888888887777777777777766


Q ss_pred             HHHHHHHHHHHHH
Q 046695          541 ELRLKAKELEEEI  553 (604)
Q Consensus       541 ELK~rv~eLeEev  553 (604)
                      --.--|.++...+
T Consensus       246 ~kek~ViniQ~~f  258 (305)
T PF14915_consen  246 NKEKTVINIQDQF  258 (305)
T ss_pred             HHHHHHhhHHHHH
Confidence            5554455554433

>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex

Probab=98.30  E-value=0.015  Score=66.42  Aligned_cols=118  Identities=19%  Similarity=0.331  Sum_probs=71.5

Q ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHh----HHHHHHHHHHHHHHH
Q 046695          471 QLKASIAERDKHIENLNRSLDSLKAERDRLESDVISRDDRMDQMEKHLQQLHMEHTELIKG----AEDAHRMVGELRLKA  546 (604)
Q Consensus       471 ~lk~el~e~~~~Le~L~~ek~~Le~el~~Leqe~~s~r~~I~emE~~L~qLr~E~e~le~~----l~elk~kl~ELK~rv  546 (604)
                      .+...+-.++..++.-.+....+..+-..|...+..-..+++.++-.++.|+.+++.+...    .+.+...+..-++-.
T Consensus       591 ~lenk~~~LrKqvEnk~K~ieeLqqeNk~LKKk~~aE~kq~~~~eikVn~L~~E~e~~kk~~eE~~~~~~keie~K~~~e  670 (786)
T PF05483_consen  591 ILENKCNNLRKQVENKNKNIEELQQENKALKKKITAESKQSNVYEIKVNKLQEELENLKKKHEEETDKYQKEIESKSISE  670 (786)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhhH
Confidence            3333333444444444444444444444555555555555555555555555555555442    344566777777888


Q ss_pred             HHHHHHHHHHHHhhhhhhhhHHHH-HH------HHhhhHHHHHhhHHHH
Q 046695          547 KELEEEIEKQRVVILEGAEEKREA-IR------QLCFSLEHYRSGYISL  588 (604)
Q Consensus       547 ~eLeEeve~qk~~i~~~aEeKreA-Ir------QlcfslehyR~~y~~L  588 (604)
                      .+|..+|++.|++.-+..--|+|. ||      -.-=-.|.|.+.|.+.
T Consensus       671 ~~L~~EveK~k~~a~EAvK~q~EtdlrCQhKIAeMVALMEKHK~qYDki  719 (786)
T PF05483_consen  671 EELLGEVEKAKLTADEAVKLQEETDLRCQHKIAEMVALMEKHKHQYDKI  719 (786)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence            999999999999998888888775 22      2222358888888765

Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex

>PRK11637 AmiB activator; Provisional

Probab=98.29  E-value=0.0014  Score=72.13  Aligned_cols=47  Identities=13%  Similarity=0.263  Sum_probs=19.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhhhH
Q 046695          348 KIQTLQNQLQLAQKDIATWKSKLNSERKEVSKLQERIKSLKTSLSDR  394 (604)
Q Consensus       348 kieqLq~eLe~~q~eie~i~~kLE~e~~ei~~LqeeI~eLk~qlq~l  394 (604)
                      .+..++..+...+.+|..++.++.....++..++.+|......+..+
T Consensus        83 qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~~r  129 (428)
T PRK11637         83 AISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLAAQ  129 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333444444444444444444444444444444444444444333

>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]

Probab=98.26  E-value=0.0088  Score=62.79  Aligned_cols=173  Identities=20%  Similarity=0.321  Sum_probs=94.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH---HhhhhhHHHHHHHHHHHHHHHHhhhchHHHhHHHHHHhH
Q 046695          350 QTLQNQLQLAQKDIATWKSKLNSERKEVSKLQERIKSL---KTSLSDRDHEVRDLKMAVSDAEQKIFPEKAQIKAEILGL  426 (604)
Q Consensus       350 eqLq~eLe~~q~eie~i~~kLE~e~~ei~~LqeeI~eL---k~qlq~leeeI~eLk~~l~d~eekls~eKa~l~~ei~~L  426 (604)
                      ..+..++....+....+..++......+.++-+.+...   .-.+..++.+|..|...+..  .-++++...      ++
T Consensus        65 deineev~elK~kR~ein~kl~eL~~~~~~l~e~~~~~~~~~~~~~~ler~i~~Le~~~~T--~~L~~e~E~------~l  136 (294)
T COG1340          65 DEINEEVQELKEKRDEINAKLQELRKEYRELKEKRNEFNLGGRSIKSLEREIERLEKKQQT--SVLTPEEER------EL  136 (294)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCHHHHHHHHHHHHHHHHh--cCCChHHHH------HH
Confidence            33444444444445555555555555555555544433   22333445555555443332  223333322      22


Q ss_pred             HHHHHHHHHHHHHHHHh------hhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 046695          427 YEEKACLVEQLREWESR------GRSLEDELRIIKTQKTELEERIVGEIEQLKASIAERDKHIENLNRSLDSLKAERDRL  500 (604)
Q Consensus       427 qEk~~sLe~eL~ele~~------i~sLe~eIkql~~E~~e~e~~le~eIs~lk~el~e~~~~Le~L~~ek~~Le~el~~L  500 (604)
                      -.+++.|+.++..+...      +..+-.++..+....   . .+-..|..+-+++......+..++...+.+..+.+.+
T Consensus       137 vq~I~~L~k~le~~~k~~e~~~~~~el~aei~~lk~~~---~-e~~eki~~la~eaqe~he~m~k~~~~~De~Rkeade~  212 (294)
T COG1340         137 VQKIKELRKELEDAKKALEENEKLKELKAEIDELKKKA---R-EIHEKIQELANEAQEYHEEMIKLFEEADELRKEADEL  212 (294)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            23333344444444332      333444444444444   4 5666777777777777777777777777777777777


Q ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 046695          501 ESDVISRDDRMDQMEKHLQQLHMEHTELIKGAED  534 (604)
Q Consensus       501 eqe~~s~r~~I~emE~~L~qLr~E~e~le~~l~e  534 (604)
                      -.++......+.++...+..++.++..+...+..
T Consensus       213 he~~ve~~~~~~e~~ee~~~~~~elre~~k~ik~  246 (294)
T COG1340         213 HEEFVELSKKIDELHEEFRNLQNELRELEKKIKA  246 (294)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7777777777777777777766666655554443

>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5

Probab=98.25  E-value=0.0011  Score=76.37  Aligned_cols=158  Identities=20%  Similarity=0.254  Sum_probs=87.8

Q ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 046695          419 IKAEILGLYEEKACLVEQLREWESRGRSLEDELRIIKTQKTELEERIVGEIEQLKASIAERDKHIENLNRSLDSLKAERD  498 (604)
Q Consensus       419 l~~ei~~LqEk~~sLe~eL~ele~~i~sLe~eIkql~~E~~e~e~~le~eIs~lk~el~e~~~~Le~L~~ek~~Le~el~  498 (604)
                      +..++..|..++..|..++...-.....+..-+..-+.++   . .++..+..+.....+....|+.+...+..+.-   
T Consensus        85 Lq~E~~~L~kElE~L~~qlqaqv~~ne~Ls~L~~EqEerL---~-ELE~~le~~~e~~~D~~kLLe~lqsdk~t~SR---  157 (617)
T PF15070_consen   85 LQAEAEHLRKELESLEEQLQAQVENNEQLSRLNQEQEERL---A-ELEEELERLQEQQEDRQKLLEQLQSDKATASR---  157 (617)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H-HHHHHHHHHHHHHHHHHHHHhhhcccchHHHH---
Confidence            4444444444444444444443333333333333333333   2 45556666777777777777777766665443   


Q ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHH-------HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHH
Q 046695          499 RLESDVISRDDRMDQMEKHLQQLHMEH-------TELIKGAEDAHRMVGELRLKAKELEEEIEKQRVVILEGAEEKREAI  571 (604)
Q Consensus       499 ~Leqe~~s~r~~I~emE~~L~qLr~E~-------e~le~~l~elk~kl~ELK~rv~eLeEeve~qk~~i~~~aEeKreAI  571 (604)
                       +...-..++..+.+|.+..-.|..+.       ..-...-.++..++++++.++.++.+.|+.....+..+.+.-+.-.
T Consensus       158 -AlsQN~eLK~QL~Elq~~Fv~ltne~~elt~~lq~Eq~~~keL~~kl~~l~~~l~~~~e~le~K~qE~~~Lq~q~dq~~  236 (617)
T PF15070_consen  158 -ALSQNRELKEQLAELQDAFVKLTNENMELTSALQSEQHVKKELQKKLGELQEKLHNLKEKLELKSQEAQSLQEQRDQYL  236 (617)
T ss_pred             -HHHhHHHHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence             33334455555555555444444443       2222233467778888888888888888776665555555333222


Q ss_pred             HHHhhhHHHHHhhHHHH
Q 046695          572 RQLCFSLEHYRSGYISL  588 (604)
Q Consensus       572 rQlcfslehyR~~y~~L  588 (604)
                      .    -|-||+-+|+.|
T Consensus       237 ~----~Lqqy~a~~q~l  249 (617)
T PF15070_consen  237 G----HLQQYVAAYQQL  249 (617)
T ss_pred             H----HHHHHHHHHHHH
Confidence            2    467888888877

>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]

Probab=98.25  E-value=0.022  Score=65.98  Aligned_cols=80  Identities=15%  Similarity=0.193  Sum_probs=46.8

Q ss_pred             hHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHH
Q 046695          489 SLDSLKAERDRLESDVISRDDRMDQMEKHLQQLHMEHTELIKGAEDAHRMVGELRLKAKELEEEIEKQRVVILEGAEEKR  568 (604)
Q Consensus       489 ek~~Le~el~~Leqe~~s~r~~I~emE~~L~qLr~E~e~le~~l~elk~kl~ELK~rv~eLeEeve~qk~~i~~~aEeKr  568 (604)
                      ++..+.-.+-+..-.....+..+++++++...+-.....+.....+.+..+..|..-...+.+.++.||.-|....-+|+
T Consensus       331 qkadirc~LlEarrk~egfddk~~eLEKkrd~al~dvr~i~e~k~nve~elqsL~~l~aerqeQidelKn~if~~e~~~~  410 (1265)
T KOG0976|consen  331 QKADIRCALLEARRKAEGFDDKLNELEKKRDMALMDVRSIQEKKENVEEELQSLLELQAERQEQIDELKNHIFRLEQGKK  410 (1265)
T ss_pred             HHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccc
Confidence            34444444444444444444444444444444444445555556666666667777777788888888888877666644

>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5

Probab=98.24  E-value=0.0038  Score=71.99  Aligned_cols=294  Identities=17%  Similarity=0.202  Sum_probs=151.8

Q ss_pred             HhhhhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh--------HHHHHHHHHHHHHHHHHHHHHH
Q 046695          296 QEGINGLETPSLDLDNKVKALMEELRITKEKLMLSEAEIASLKQEVESNR--------SEKIQTLQNQLQLAQKDIATWK  367 (604)
Q Consensus       296 q~~I~eLE~el~el~~kl~~L~eEL~~~~eeL~~se~eI~~Lk~EL~sl~--------~~kieqLq~eLe~~q~eie~i~  367 (604)
                      .+....+...+..+..++..+.++.......+..++..|..|++.+....        .....+|+.++..++++++.+.
T Consensus        21 k~e~a~~qqr~~qmseev~~L~eEk~~~~~~V~eLE~sL~eLk~q~~~~~~~~~pa~pse~E~~Lq~E~~~L~kElE~L~  100 (617)
T PF15070_consen   21 KEESAQWQQRMQQMSEEVRTLKEEKEHDISRVQELERSLSELKNQMAEPPPPEPPAGPSEVEQQLQAEAEHLRKELESLE  100 (617)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccccccchHHHHHHHHHHHHHHHHHHHHH
Confidence            33344445555677777888888888777888888888888888765321        1234578888888888898888


Q ss_pred             HhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhchHHHh-------------HHHHHHhHHHHHHHHH
Q 046695          368 SKLNSERKEVSKLQERIKSLKTSLSDRDHEVRDLKMAVSDAEQKIFPEKAQ-------------IKAEILGLYEEKACLV  434 (604)
Q Consensus       368 ~kLE~e~~ei~~LqeeI~eLk~qlq~leeeI~eLk~~l~d~eekls~eKa~-------------l~~ei~~LqEk~~sLe  434 (604)
                      .+++........|-.-+.+.+.++.+++..+..+.....+...-+....+.             ++..+..+++.-..|.
T Consensus       101 ~qlqaqv~~ne~Ls~L~~EqEerL~ELE~~le~~~e~~~D~~kLLe~lqsdk~t~SRAlsQN~eLK~QL~Elq~~Fv~lt  180 (617)
T PF15070_consen  101 EQLQAQVENNEQLSRLNQEQEERLAELEEELERLQEQQEDRQKLLEQLQSDKATASRALSQNRELKEQLAELQDAFVKLT  180 (617)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence            887776655555544445555666666666666555444332222111100             3333333333333333


Q ss_pred             HHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHH
Q 046695          435 EQLREWESRGRSLEDELRIIKTQKTELEERIVGEIEQLKASIAERDKHIENLNRSLDSLKAERDRLESDVISRDDRMDQM  514 (604)
Q Consensus       435 ~eL~ele~~i~sLe~eIkql~~E~~e~e~~le~eIs~lk~el~e~~~~Le~L~~ek~~Le~el~~Leqe~~s~r~~I~em  514 (604)
                      ++.-++...+++-.--.+.+...+   . .++..+..++..+......+..|..+.+.+-.-+.-....|...-..-..+
T Consensus       181 ne~~elt~~lq~Eq~~~keL~~kl---~-~l~~~l~~~~e~le~K~qE~~~Lq~q~dq~~~~Lqqy~a~~q~l~~e~e~L  256 (617)
T PF15070_consen  181 NENMELTSALQSEQHVKKELQKKL---G-ELQEKLHNLKEKLELKSQEAQSLQEQRDQYLGHLQQYVAAYQQLASEKEEL  256 (617)
T ss_pred             HhhhHhhHHHHHHHHHHHHHHHHH---H-HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333222222222222222233333   2 233444444445545445555555555444443333222222222222333


Q ss_pred             HHH-------HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh--------------h--------
Q 046695          515 EKH-------LQQLHMEHTELIKGAEDAHRMVGELRLKAKELEEEIEKQRVVILEGA--------------E--------  565 (604)
Q Consensus       515 E~~-------L~qLr~E~e~le~~l~elk~kl~ELK~rv~eLeEeve~qk~~i~~~a--------------E--------  565 (604)
                      .++       +++|+.+-......+......+.+.+..+..+....+.++..++-+|              +        
T Consensus       257 ~~q~l~Qtql~d~lq~eE~q~~~~~E~~~~ELq~~qe~Lea~~qqNqqL~~qls~~~~~~eg~~~~~~~~~ee~~~~~~~  336 (617)
T PF15070_consen  257 HKQLLQQTQLMDRLQHEESQGKVQLEMAHQELQEAQEHLEALSQQNQQLQAQLSLMALPGEGDGLESESEEEEAPQPMPS  336 (617)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcCCCCCcccccccccccccCcCcc
Confidence            322       23343332222223334445555556666666666666666554211              1        


Q ss_pred             -----hHHHHHH---------------HHhhhHHHHHhhHHHHHHHHh
Q 046695          566 -----EKREAIR---------------QLCFSLEHYRSGYISLRKAVI  593 (604)
Q Consensus       566 -----eKreAIr---------------QlcfslehyR~~y~~L~~~~~  593 (604)
                           +-|||+.               +||.-|+.-|..|+.|.+.++
T Consensus       337 ipEd~es~E~m~~f~~~a~~~~eeEr~~L~~qL~eqk~~~q~L~h~va  384 (617)
T PF15070_consen  337 IPEDLESREAMVEFFNSALAQAEEERARLRRQLEEQKVQCQHLAHQVA  384 (617)
T ss_pred             cccccccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence                 1466653               456667777778888877776

>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]

Probab=98.22  E-value=0.023  Score=64.98  Aligned_cols=32  Identities=19%  Similarity=0.054  Sum_probs=17.9

Q ss_pred             HHHHHHHhhhHHHHHhhHHHHHHHHhcCCCcc
Q 046695          568 REAIRQLCFSLEHYRSGYISLRKAVIGHKGVA  599 (604)
Q Consensus       568 reAIrQlcfslehyR~~y~~L~~~~~gh~~~~  599 (604)
                      |.-|++|.--|.---.++++|-|-+..-+||.
T Consensus       611 R~Ei~~LqrRlqaaE~R~eel~q~v~~TTrPL  642 (961)
T KOG4673|consen  611 RGEIEDLQRRLQAAERRCEELIQQVPETTRPL  642 (961)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhccccccHH
Confidence            45555555555555555555555555455553

>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]

Probab=98.15  E-value=0.0077  Score=63.23  Aligned_cols=48  Identities=19%  Similarity=0.302  Sum_probs=23.3

Q ss_pred             HHHHHHhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHh
Q 046695          363 IATWKSKLNSERKEVSKLQERIKSLKTSLSDRDHEVRDLKMAVSDAEQ  410 (604)
Q Consensus       363 ie~i~~kLE~e~~ei~~LqeeI~eLk~qlq~leeeI~eLk~~l~d~ee  410 (604)
                      +..|.++-......+..+.+.+.++..+...+.++|.+|+..-.++..
T Consensus        36 ~~~~~ekRdeln~kvrE~~e~~~elr~~rdeineev~elK~kR~ein~   83 (294)
T COG1340          36 ASELAEKRDELNAKVRELREKAQELREERDEINEEVQELKEKRDEINA   83 (294)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333444444444445555555555555555555555555554444333

>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site

Probab=98.10  E-value=0.029  Score=64.19  Aligned_cols=66  Identities=14%  Similarity=0.204  Sum_probs=41.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhc
Q 046695          348 KIQTLQNQLQLAQKDIATWKSKLNSERKEVSKLQERIKSLKTSLSDRDHEVRDLKMAVSDAEQKIF  413 (604)
Q Consensus       348 kieqLq~eLe~~q~eie~i~~kLE~e~~ei~~LqeeI~eLk~qlq~leeeI~eLk~~l~d~eekls  413 (604)
                      .+......+.....+|+.+-..++.+..-.......+..+...+..+......|...+....+.+.
T Consensus       272 ~l~~~~~~~~~i~~~Id~lYd~le~E~~Ak~~V~~~~~~l~~~l~~~~~~~~~l~~e~~~v~~sY~  337 (560)
T PF06160_consen  272 ELDEVEEENEEIEERIDQLYDILEKEVEAKKYVEKNLKELYEYLEHAKEQNKELKEELERVSQSYT  337 (560)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            456666666666777777766677666555555666666666666666666666666665555553

EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane

>PRK04778 septation ring formation regulator EzrA; Provisional

Probab=98.10  E-value=0.039  Score=63.26  Aligned_cols=124  Identities=16%  Similarity=0.232  Sum_probs=55.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH---HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 046695          465 IVGEIEQLKASIAERDKHIENLNRSLDSLKAERDR---LESDVISRDDRMDQMEKHLQQLHMEHTELIKGAEDAHRMVGE  541 (604)
Q Consensus       465 le~eIs~lk~el~e~~~~Le~L~~ek~~Le~el~~---Leqe~~s~r~~I~emE~~L~qLr~E~e~le~~l~elk~kl~E  541 (604)
                      +++.+..+...+.+..+....|..+.+.+......   -...+.....++..++..+..+.............+...+.+
T Consensus       308 vek~~~~l~~~l~~~~e~~~~l~~Ei~~l~~sY~l~~~e~~~~~~lekeL~~Le~~~~~~~~~i~~~~~~ysel~e~lee  387 (569)
T PRK04778        308 VEKNSDTLPDFLEHAKEQNKELKEEIDRVKQSYTLNESELESVRQLEKQLESLEKQYDEITERIAEQEIAYSELQEELEE  387 (569)
T ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence            33344444444444444444444444444443100   000133333444444444444444443333344445555555


Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhHHHHHhhHHHHHHHH
Q 046695          542 LRLKAKELEEEIEKQRVVILEGAEEKREAIRQLCFSLEHYRSGYISLRKAV  592 (604)
Q Consensus       542 LK~rv~eLeEeve~qk~~i~~~aEeKreAIrQlcfslehyR~~y~~L~~~~  592 (604)
                      +..++..+++.....+..|.++..+=.+|..    -|++||.-...+...+
T Consensus       388 l~e~leeie~eq~ei~e~l~~Lrk~E~eAr~----kL~~~~~~L~~ikr~l  434 (569)
T PRK04778        388 ILKQLEEIEKEQEKLSEMLQGLRKDELEARE----KLERYRNKLHEIKRYL  434 (569)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Confidence            5555555555555555555554443333333    3555665555555544

>PRK04863 mukB cell division protein MukB; Provisional

Probab=98.09  E-value=0.022  Score=71.68  Aligned_cols=162  Identities=10%  Similarity=0.133  Sum_probs=74.9

Q ss_pred             HHhhhhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 046695          295 LQEGINGLETPSLDLDNKVKALMEELRITKEKLMLSEAEIASLKQEVESNRSEKIQTLQNQLQLAQKDIATWKSKLNSER  374 (604)
Q Consensus       295 Lq~~I~eLE~el~el~~kl~~L~eEL~~~~eeL~~se~eI~~Lk~EL~sl~~~kieqLq~eLe~~q~eie~i~~kLE~e~  374 (604)
                      .+..+.++...+.++..++..|..+...+..-+.... ++..+..++..+ ...++.++..++.....++....++....
T Consensus       305 tE~nL~rI~diL~ELe~rL~kLEkQaEkA~kyleL~e-e~lr~q~ei~~l-~~~LeELee~Lee~eeeLeeleeeleele  382 (1486)
T PRK04863        305 EQYRLVEMARELAELNEAESDLEQDYQAASDHLNLVQ-TALRQQEKIERY-QADLEELEERLEEQNEVVEEADEQQEENE  382 (1486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444444555555555555554433322222 222222222222 33444444444444444444444444444


Q ss_pred             HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhchHHHh-------------HHHHHHhHHHHHHHHHHHHHHHH
Q 046695          375 KEVSKLQERIKSLKTSLSDRDHEVRDLKMAVSDAEQKIFPEKAQ-------------IKAEILGLYEEKACLVEQLREWE  441 (604)
Q Consensus       375 ~ei~~LqeeI~eLk~qlq~leeeI~eLk~~l~d~eekls~eKa~-------------l~~ei~~LqEk~~sLe~eL~ele  441 (604)
                      .++..++.++..++.++.++...+..+++.+....+.+......             +...+.++..++..++.++..++
T Consensus       383 eEleelEeeLeeLqeqLaelqqel~elQ~el~q~qq~i~~Le~~~~~~~~~~~SdEeLe~~LenF~aklee~e~qL~elE  462 (1486)
T PRK04863        383 ARAEAAEEEVDELKSQLADYQQALDVQQTRAIQYQQAVQALERAKQLCGLPDLTADNAEDWLEEFQAKEQEATEELLSLE  462 (1486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444555555555544444444444444443333333221111             45555555555555555555555


Q ss_pred             HhhhhHHHHHHHHHHhh
Q 046695          442 SRGRSLEDELRIIKTQK  458 (604)
Q Consensus       442 ~~i~sLe~eIkql~~E~  458 (604)
                      .++..++..+.++....
T Consensus       463 ~kL~~lea~leql~~~~  479 (1486)
T PRK04863        463 QKLSVAQAAHSQFEQAY  479 (1486)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            55555555555555554

>PRK04863 mukB cell division protein MukB; Provisional

Probab=98.06  E-value=0.021  Score=71.74  Aligned_cols=23  Identities=4%  Similarity=0.050  Sum_probs=12.2

Q ss_pred             HHHHHhhhhhhhhHHHHHHHHhh
Q 046695          554 EKQRVVILEGAEEKREAIRQLCF  576 (604)
Q Consensus       554 e~qk~~i~~~aEeKreAIrQlcf  576 (604)
                      +.+....+..+.+=...|..+|+
T Consensus       658 ~~~i~~l~~~~~g~~~~l~~~~~  680 (1486)
T PRK04863        658 DEEIERLSQPGGSEDPRLNALAE  680 (1486)
T ss_pred             HHHHHhhhccCCCccHHHHHHHH
Confidence            33333445555555666666653

>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]

Probab=98.04  E-value=0.0099  Score=65.21  Aligned_cols=92  Identities=16%  Similarity=0.215  Sum_probs=55.6

Q ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 046695          480 DKHIENLNRSLDSLKAERDRLESDVISRDDRMDQMEKHLQQLHMEHTELIKGAEDAHRMVGELRLKAKELEEEIEKQRVV  559 (604)
Q Consensus       480 ~~~Le~L~~ek~~Le~el~~Leqe~~s~r~~I~emE~~L~qLr~E~e~le~~l~elk~kl~ELK~rv~eLeEeve~qk~~  559 (604)
                      ...+..|...+..+..+-..+..-......+...+..-+.+-+.-..++...+..-..++.+|+.+-.+|...|.+....
T Consensus       167 ~~~~~~l~~~~~~iaaeq~~l~~~~~eq~~q~~kl~~~~~E~kk~~~~l~~~l~~~q~~l~eL~~~~~~L~~~Ias~e~~  246 (420)
T COG4942         167 KATLKQLAAVRAEIAAEQAELTTLLSEQRAQQAKLAQLLEERKKTLAQLNSELSADQKKLEELRANESRLKNEIASAEAA  246 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence            33333444444444444444444444555555555555555555555556666667778888888888888888877777


Q ss_pred             hhhhhhhHHHHHH
Q 046695          560 ILEGAEEKREAIR  572 (604)
Q Consensus       560 i~~~aEeKreAIr  572 (604)
                      +. .+-|+|||=|
T Consensus       247 aA-~~re~~aa~~  258 (420)
T COG4942         247 AA-KAREAAAAAE  258 (420)
T ss_pred             HH-HHHHHHHHHH
Confidence            77 6666666543

>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]

Probab=98.03  E-value=0.046  Score=61.66  Aligned_cols=115  Identities=17%  Similarity=0.289  Sum_probs=58.0

Q ss_pred             hHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH----HHHHHHHhHHHHHHHHHHHHHHH
Q 046695          446 SLEDELRIIKTQKTELEERIVGEIEQLKASIAERDKHIENLNRSLDSLKAERD----RLESDVISRDDRMDQMEKHLQQL  521 (604)
Q Consensus       446 sLe~eIkql~~E~~e~e~~le~eIs~lk~el~e~~~~Le~L~~ek~~Le~el~----~Leqe~~s~r~~I~emE~~L~qL  521 (604)
                      +...++.+...++   . .++..+.+++..|.++...+..+.-+...+.....    ..+.....-+.+|+.|++++..+
T Consensus       429 ei~~~~~~~~~~~---~-tLq~~~~~~~~~i~E~~~~l~~~~~el~~~~~~~~~~k~e~eee~~k~~~E~e~le~~l~~l  504 (581)
T KOG0995|consen  429 EISEELHEAENEL---E-TLQEHFSNKASTIEEKIQILGEIELELKKAESKYELKKEEAEEEWKKCRKEIEKLEEELLNL  504 (581)
T ss_pred             HHHHHHHHHHHHH---H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444444444   3 45566666666666666666555555554444333    33344455566666666666665


Q ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHH-HHHhhhH
Q 046695          522 HMEHTELIKGAEDAHRMVGELRLKAKELEEEIEKQRVVILEGAEEKREAI-RQLCFSL  578 (604)
Q Consensus       522 r~E~e~le~~l~elk~kl~ELK~rv~eLeEeve~qk~~i~~~aEeKreAI-rQlcfsl  578 (604)
                      ......-.          .+.-..+.+++-++.    .++-..+|+|.+| -||-+-|
T Consensus       505 ~l~~~~~m----------~~a~~~v~s~e~el~----~~~~~~~eer~ki~~ql~~~i  548 (581)
T KOG0995|consen  505 KLVLNTSM----------KEAEELVKSIELELD----RMVATGEEERQKIAKQLFAVI  548 (581)
T ss_pred             HHHHHHHH----------HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence            55433222          222233333333332    2333446667777 5665544

>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]

Probab=98.03  E-value=0.008  Score=68.09  Aligned_cols=104  Identities=14%  Similarity=0.202  Sum_probs=45.0

Q ss_pred             HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhchHHHhHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh
Q 046695          378 SKLQERIKSLKTSLSDRDHEVRDLKMAVSDAEQKIFPEKAQIKAEILGLYEEKACLVEQLREWESRGRSLEDELRIIKTQ  457 (604)
Q Consensus       378 ~~LqeeI~eLk~qlq~leeeI~eLk~~l~d~eekls~eKa~l~~ei~~LqEk~~sLe~eL~ele~~i~sLe~eIkql~~E  457 (604)
                      .....+|.-+-+.+...+..|..|+..+..+.+++.-.+......   .-.-+......|..+++.|..|-..|+++++.
T Consensus       231 ~~k~aev~lim~eLe~aq~ri~~lE~e~e~L~~ql~~~N~~~~~~---~~~~i~~~~~~L~~kd~~i~~L~~di~~~~~S  307 (629)
T KOG0963|consen  231 AAKAAEVSLIMTELEDAQQRIVFLEREVEQLREQLAKANSSKKLA---KIDDIDALGSVLNQKDSEIAQLSNDIERLEAS  307 (629)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhc---cCCchHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence            333445555555555555555555555555555554333331111   11222333333333444444555555555444


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046695          458 KTELEERIVGEIEQLKASIAERDKHIE  484 (604)
Q Consensus       458 ~~e~e~~le~eIs~lk~el~e~~~~Le  484 (604)
                      +.++......+|+.+..++......|+
T Consensus       308 ~~~e~e~~~~qI~~le~~l~~~~~~le  334 (629)
T KOG0963|consen  308 LVEEREKHKAQISALEKELKAKISELE  334 (629)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            432222233334444333333333333

>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]

Probab=97.99  E-value=0.018  Score=63.37  Aligned_cols=90  Identities=18%  Similarity=0.292  Sum_probs=53.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH----HHHHHhHHHHHHHHHHHHHHHHHHH----HHHHHhHHHH
Q 046695          464 RIVGEIEQLKASIAERDKHIENLNRSLDSLKAERDRL----ESDVISRDDRMDQMEKHLQQLHMEH----TELIKGAEDA  535 (604)
Q Consensus       464 ~le~eIs~lk~el~e~~~~Le~L~~ek~~Le~el~~L----eqe~~s~r~~I~emE~~L~qLr~E~----e~le~~l~el  535 (604)
                      .+++.|.+++..+.++...|.-+..+....-.++..+    +.+....+.++.-||+.|.+|+..-    -..++.+..+
T Consensus       484 ~Lee~i~~~~~~i~El~~~l~~~e~~L~~a~s~~~~~ke~~e~e~~a~~~E~eklE~el~~lnL~s~ts~l~~eq~vqs~  563 (622)
T COG5185         484 TLEEDIKNLKHDINELTQILEKLELELSEANSKFELSKEENERELVAQRIEIEKLEKELNDLNLLSKTSILDAEQLVQST  563 (622)
T ss_pred             eHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhccchHhhHHHHHHHH
Confidence            3667777777777777777776666666555544433    3456667778888888888877643    2233344444


Q ss_pred             HHHHHHHHHHHHHHHHHH
Q 046695          536 HRMVGELRLKAKELEEEI  553 (604)
Q Consensus       536 k~kl~ELK~rv~eLeEev  553 (604)
                      ..++.++...+..-+..+
T Consensus       564 ~i~ld~~~~~~n~~r~~i  581 (622)
T COG5185         564 EIKLDELKVDLNRKRYKI  581 (622)
T ss_pred             HhhHHHHHHHHHHHHHHH
Confidence            444444444444433333

>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril

Probab=97.95  E-value=1.8e-06  Score=102.58  Aligned_cols=162  Identities=20%  Similarity=0.263  Sum_probs=0.0

Q ss_pred             HHHHHhhHHHHHHHHHhhhhcHHHHHHHHHHHhhhccccchhhhhhccCChhhhhhhhchHHHHhhhhccCCcchhhhHH
Q 046695          233 FARIVGYEKKLRLANEKIHISNEEILRLKIELQKYNSSETNNYLQADFGSPAEINVNMWDAELQEGINGLETPSLDLDNK  312 (604)
Q Consensus       233 ~~~~~~~~~el~~~n~~~~~~e~ei~~lk~ele~~~~~~~~~~~~~~~~~~~e~~~~~~~~~Lq~~I~eLE~el~el~~k  312 (604)
                      ..++..+...+..++.++..++--..+|..+++.+..+ +++......             .+.+....|...+.+....
T Consensus       327 ~~~L~el~e~le~~~~~~~~LeK~k~rL~~EleDl~~e-Le~~~~~~~-------------~LeKKqr~fDk~l~e~k~~  392 (859)
T PF01576_consen  327 ERKLQELQEQLEEANAKVSSLEKTKKRLQGELEDLTSE-LEKAQAAAA-------------ELEKKQRKFDKQLAEWKAK  392 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH-------------HHHHHHHhHHHHHHHHHHH
Confidence            35566666666666666666666666666666666443 443332222             3333444455555555555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhh
Q 046695          313 VKALMEELRITKEKLMLSEAEIASLKQEVESNRSEKIQTLQNQLQLAQKDIATWKSKLNSERKEVSKLQERIKSLKTSLS  392 (604)
Q Consensus       313 l~~L~eEL~~~~eeL~~se~eI~~Lk~EL~sl~~~kieqLq~eLe~~q~eie~i~~kLE~e~~ei~~LqeeI~eLk~qlq  392 (604)
                      +..+..++..+.........++..|++.+..+ ...+..+......++.+|..+...+......+..|......|..++.
T Consensus       393 ~~~~~~e~d~~q~e~r~~~te~~~Lk~~lee~-~e~~e~lere~k~L~~El~dl~~q~~~~~k~v~eLek~kr~LE~e~~  471 (859)
T PF01576_consen  393 VEELQAERDAAQREARELETELFKLKNELEEL-QEQLEELERENKQLQDELEDLTSQLDDAGKSVHELEKAKRRLEQEKE  471 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHhhhHHH-HHHHHHHHHHHHHHHHhhccchhhhhhhccchHHHHHHHHHHHHHHH
Confidence            55555555555566666777777777777666 55667777777777777777777766666666666666666666665


Q ss_pred             hHHHHHHHHHHHHHHHH
Q 046695          393 DRDHEVRDLKMAVSDAE  409 (604)
Q Consensus       393 ~leeeI~eLk~~l~d~e  409 (604)
                      .+...+.+++.++...+
T Consensus       472 El~~~leE~E~~l~~~E  488 (859)
T PF01576_consen  472 ELQEQLEEAEDALEAEE  488 (859)
T ss_dssp             -----------------
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            55555555555444433

Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes

Probab=97.90  E-value=0.012  Score=68.84  Aligned_cols=94  Identities=15%  Similarity=0.274  Sum_probs=48.4

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 046695          309 LDNKVKALMEELRITKEKLMLSEAEIASLKQEVESNRSEKIQTLQNQLQLAQKDIATWKSKLNSERKEVSKLQERIKSLK  388 (604)
Q Consensus       309 l~~kl~~L~eEL~~~~eeL~~se~eI~~Lk~EL~sl~~~kieqLq~eLe~~q~eie~i~~kLE~e~~ei~~LqeeI~eLk  388 (604)
                      +..+++.|+.+|+.....=++++.+|..+.+-=-.+ ...+.+++.+.+.+++.+..+...-+..+..+..|+.+|++..
T Consensus       423 LE~dvkkLraeLq~~Rq~E~ELRsqis~l~~~Er~l-k~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~eE~  501 (697)
T PF09726_consen  423 LEADVKKLRAELQSSRQSEQELRSQISSLTNNERSL-KSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKRLAEER  501 (697)
T ss_pred             HHHHHHHHHHHHHhhhhhHHHHHHHHhhccccchHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444445555554443322233333333333211112 3345666666666666666666666666666666666666666


Q ss_pred             hhhhhHHHHHHHHHH
Q 046695          389 TSLSDRDHEVRDLKM  403 (604)
Q Consensus       389 ~qlq~leeeI~eLk~  403 (604)
                      .....++.++.+-+.
T Consensus       502 ~~R~~lEkQL~eErk  516 (697)
T PF09726_consen  502 RQRASLEKQLQEERK  516 (697)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            666666666655543

; GO: 0016021 integral to membrane

>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.90  E-value=0.093  Score=60.92  Aligned_cols=163  Identities=17%  Similarity=0.231  Sum_probs=91.9

Q ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhchHHHh----------HHHHHHhH
Q 046695          357 QLAQKDIATWKSKLNSERKEVSKLQERIKSLKTSLSDRDHEVRDLKMAVSDAEQKIFPEKAQ----------IKAEILGL  426 (604)
Q Consensus       357 e~~q~eie~i~~kLE~e~~ei~~LqeeI~eLk~qlq~leeeI~eLk~~l~d~eekls~eKa~----------l~~ei~~L  426 (604)
                      +--+.++.++..+-..++..+..+....+.|..++..++..+..|...++|..-.+...|..          ..+++.++
T Consensus       412 ewErar~qem~~Qk~reqe~iv~~nak~~ql~~eletLn~k~qqls~kl~Dvr~~~tt~kt~ie~~~~q~e~~isei~ql  491 (1118)
T KOG1029|consen  412 EWERARRQEMLNQKNREQEWIVYLNAKKKQLQQELETLNFKLQQLSGKLQDVRVDITTQKTEIEEVTKQRELMISEIDQL  491 (1118)
T ss_pred             HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhheeccchHHHHHHHhhhHHHHHHHHHHHH
Confidence            33345555666666666667777777777777777777777777777777666555444433          12223333


Q ss_pred             HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Q 046695          427 YEEKACLVEQLREWESRGRSLEDELRIIKTQKTELEERIVGEIEQLKASIAERDKHIENLNRSLDSLKAERDRLESDVIS  506 (604)
Q Consensus       427 qEk~~sLe~eL~ele~~i~sLe~eIkql~~E~~e~e~~le~eIs~lk~el~e~~~~Le~L~~ek~~Le~el~~Leqe~~s  506 (604)
                      +-++.-+...|.++--+-+.|..++++.....   . .-..+.+.|+...+..+..       +..+++.+.+|.++..+
T Consensus       492 qarikE~q~kl~~l~~Ekq~l~~qlkq~q~a~---~-~~~~~~s~L~aa~~~ke~i-------rq~ikdqldelskE~es  560 (1118)
T KOG1029|consen  492 QARIKELQEKLQKLAPEKQELNHQLKQKQSAH---K-ETTQRKSELEAARRKKELI-------RQAIKDQLDELSKETES  560 (1118)
T ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhc---c-CcchHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
Confidence            33333333333333333333333333333332   1 1112233333333332222       44567788889999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Q 046695          507 RDDRMDQMEKHLQQLHMEHTELIK  530 (604)
Q Consensus       507 ~r~~I~emE~~L~qLr~E~e~le~  530 (604)
                      ..+.|+.++++|++|+..+.....
T Consensus       561 k~~eidi~n~qlkelk~~~~~q~l  584 (1118)
T KOG1029|consen  561 KLNEIDIFNNQLKELKEDVNSQQL  584 (1118)
T ss_pred             HHHhhhhHHHHHHHHHHHHHHHHH
Confidence            999999999999999887765443

>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]

Probab=97.90  E-value=0.084  Score=60.16  Aligned_cols=83  Identities=19%  Similarity=0.335  Sum_probs=58.2

Q ss_pred             HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhchHHHhHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 046695          377 VSKLQERIKSLKTSLSDRDHEVRDLKMAVSDAEQKIFPEKAQIKAEILGLYEEKACLVEQLREWESRGRSLEDELRIIKT  456 (604)
Q Consensus       377 i~~LqeeI~eLk~qlq~leeeI~eLk~~l~d~eekls~eKa~l~~ei~~LqEk~~sLe~eL~ele~~i~sLe~eIkql~~  456 (604)
                      .+.|..+-..+..++..++..|..|..++.+...+++..++.+.-+..-....+.-+-.++.+-+.++..+++++.++..
T Consensus       184 e~~L~~~~~~~~~q~~~le~ki~~lq~a~~~t~~el~~~~s~~dee~~~k~aev~lim~eLe~aq~ri~~lE~e~e~L~~  263 (629)
T KOG0963|consen  184 EAGLKDEEQNLQEQLEELEKKISSLQSAIEDTQNELFDLKSKYDEEVAAKAAEVSLIMTELEDAQQRIVFLEREVEQLRE  263 (629)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45566777777777777777788887777777777777666655555666666666777777777777777777776666


Q ss_pred             hhh
Q 046695          457 QKT  459 (604)
Q Consensus       457 E~~  459 (604)
                      +++
T Consensus       264 ql~  266 (629)
T KOG0963|consen  264 QLA  266 (629)
T ss_pred             HHH
Confidence            663

>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril

Probab=97.86  E-value=3.2e-06  Score=100.39  Aligned_cols=210  Identities=23%  Similarity=0.361  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH-HHHHHHHHHHHHhhhhhHHHHHHH
Q 046695          322 ITKEKLMLSEAEIASLKQEVESNRSEKIQTLQNQLQLAQKDIATWKSKLNSERKE-VSKLQERIKSLKTSLSDRDHEVRD  400 (604)
Q Consensus       322 ~~~eeL~~se~eI~~Lk~EL~sl~~~kieqLq~eLe~~q~eie~i~~kLE~e~~e-i~~LqeeI~eLk~qlq~leeeI~e  400 (604)
                      .+...++.++.++..|...+..- ......++..+..+..++..|+.+++..... +..|.+-=+.+..++.++...+.+
T Consensus       261 ~L~~~l~~le~e~~~L~eqleeE-~e~k~~l~~qlsk~~~El~~~k~K~e~e~~~~~EelEeaKKkL~~~L~el~e~le~  339 (859)
T PF01576_consen  261 ALEKQLRQLEHELEQLREQLEEE-EEAKSELERQLSKLNAELEQWKKKYEEEAEQRTEELEEAKKKLERKLQELQEQLEE  339 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             hhHHHHHHHHHHHHHHHHHHhhh-hhhHHHHHHHHHHHhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33445555666666666666544 4456777788888888888888887776544 333433333344444444444444


Q ss_pred             HHHHHHHHHhh---hchHHHhHHHHHHhHHHHH-------HHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHH
Q 046695          401 LKMAVSDAEQK---IFPEKAQIKAEILGLYEEK-------ACLVEQLREWESRGRSLEDELRIIKTQKTELEERIVGEIE  470 (604)
Q Consensus       401 Lk~~l~d~eek---ls~eKa~l~~ei~~LqEk~-------~sLe~eL~ele~~i~sLe~eIkql~~E~~e~e~~le~eIs  470 (604)
                      +...+..++..   +..+-..+.+.+.+....+       ..+...+..|...+..+...+.....+.   - .+..+|-
T Consensus       340 ~~~~~~~LeK~k~rL~~EleDl~~eLe~~~~~~~~LeKKqr~fDk~l~e~k~~~~~~~~e~d~~q~e~---r-~~~te~~  415 (859)
T PF01576_consen  340 ANAKVSSLEKTKKRLQGELEDLTSELEKAQAAAAELEKKQRKFDKQLAEWKAKVEELQAERDAAQREA---R-ELETELF  415 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh---H-HHHHHHH
Confidence            43333322221   1111111333333444333       3444444444444433333333333333   2 4666777


Q ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 046695          471 QLKASIAERDKHIENLNRSLDSLKAERDRLESDVISRDDRMDQMEKHLQQLHMEHTELIKGAEDAH  536 (604)
Q Consensus       471 ~lk~el~e~~~~Le~L~~ek~~Le~el~~Leqe~~s~r~~I~emE~~L~qLr~E~e~le~~l~elk  536 (604)
                      .++..+......++.+.++.-.+..++..|...+......+.+|+...+.|..++..+...+.++.
T Consensus       416 ~Lk~~lee~~e~~e~lere~k~L~~El~dl~~q~~~~~k~v~eLek~kr~LE~e~~El~~~leE~E  481 (859)
T PF01576_consen  416 KLKNELEELQEQLEELERENKQLQDELEDLTSQLDDAGKSVHELEKAKRRLEQEKEELQEQLEEAE  481 (859)
T ss_dssp             ------------------------------------------------------------------
T ss_pred             HHHhhhHHHHHHHHHHHHHHHHHHHhhccchhhhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            777788887888888887777777788777777777666666666666666665555544444433

Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

Probab=97.84  E-value=0.0041  Score=63.73  Aligned_cols=104  Identities=21%  Similarity=0.344  Sum_probs=56.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhchHHHh-----HHHH
Q 046695          348 KIQTLQNQLQLAQKDIATWKSKLNSERKEVSKLQERIKSLKTSLSDRDHEVRDLKMAVSDAEQKIFPEKAQ-----IKAE  422 (604)
Q Consensus       348 kieqLq~eLe~~q~eie~i~~kLE~e~~ei~~LqeeI~eLk~qlq~leeeI~eLk~~l~d~eekls~eKa~-----l~~e  422 (604)
                      ++...+..+..++++++.++       ..+..++.++..+++++..++.+|.++...+.+++.++...+..     |..+
T Consensus        25 ~~~~~~~~l~k~~~e~e~~~-------~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~~~~e~~aL~~E   97 (239)
T COG1579          25 RIKEIRKALKKAKAELEALN-------KALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAVKDERELRALNIE   97 (239)
T ss_pred             hhhhhHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence            34444555555554444444       44444445555555555555556666666666555555444433     5556


Q ss_pred             HHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh
Q 046695          423 ILGLYEEKACLVEQLREWESRGRSLEDELRIIKTQK  458 (604)
Q Consensus       423 i~~LqEk~~sLe~eL~ele~~i~sLe~eIkql~~E~  458 (604)
                      +.....+..+|+.++..+...+..++.+|..+..++
T Consensus        98 ~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~  133 (239)
T COG1579          98 IQIAKERINSLEDELAELMEEIEKLEKEIEDLKERL  133 (239)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            666666666666666655555555555555554444

>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]

Probab=97.83  E-value=0.0062  Score=72.36  Aligned_cols=171  Identities=19%  Similarity=0.303  Sum_probs=80.0

Q ss_pred             HHhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhchHHHh-HHHHHHhHHHHHHHHHHHHHHHHHhhh
Q 046695          367 KSKLNSERKEVSKLQERIKSLKTSLSDRDHEVRDLKMAVSDAEQKIFPEKAQ-IKAEILGLYEEKACLVEQLREWESRGR  445 (604)
Q Consensus       367 ~~kLE~e~~ei~~LqeeI~eLk~qlq~leeeI~eLk~~l~d~eekls~eKa~-l~~ei~~LqEk~~sLe~eL~ele~~i~  445 (604)
                      ...++.....+...+|+|.++.-.++..+..+.+|+..+...+..++..=-. ..+.|....+..-     ......+..
T Consensus       710 ~~El~~~~~~i~~~~p~i~~i~r~l~~~e~~~~~L~~~~n~ved~if~~f~~~igv~ir~Yee~~~-----~~~~a~k~~  784 (1141)
T KOG0018|consen  710 ELELQRTESEIDEFGPEISEIKRKLQNREGEMKELEERMNKVEDRIFKGFCRRIGVRIREYEEREL-----QQEFAKKRL  784 (1141)
T ss_pred             HHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCeeeehHHHHHH-----HHHHHHHHH
Confidence            3334444455556667788888888888888888888777777666542222 2222333332211     112222233


Q ss_pred             hHHHHHHHHHHhhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH-------HHHHHhHHHHHHHHHHH
Q 046695          446 SLEDELRIIKTQKTELE-ERIVGEIEQLKASIAERDKHIENLNRSLDSLKAERDRL-------ESDVISRDDRMDQMEKH  517 (604)
Q Consensus       446 sLe~eIkql~~E~~e~e-~~le~eIs~lk~el~e~~~~Le~L~~ek~~Le~el~~L-------eqe~~s~r~~I~emE~~  517 (604)
                      +++.++..+..++.-+. .....++..|...+......++.+.....++...+.++       .+.+..+...+++..+.
T Consensus       785 ef~~q~~~l~~~l~fe~~~d~~~~ve~~~~~v~~~~~~~~~~~~~e~~~~k~i~e~~~~e~k~k~~~~~~~~e~~e~~k~  864 (1141)
T KOG0018|consen  785 EFENQKAKLENQLDFEKQKDTQRRVERWERSVEDLEKEIEGLKKDEEAAEKIIAEIEELEKKNKSKFEKKEDEINEVKKI  864 (1141)
T ss_pred             HHHHHHHHHhhhhhheecccHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34445555544441111 02344444555555555555555555444444444443       12223333334444444


Q ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHH
Q 046695          518 LQQLHMEHTELIKGAEDAHRMVGEL  542 (604)
Q Consensus       518 L~qLr~E~e~le~~l~elk~kl~EL  542 (604)
                      +..+..++.++...+..++-++..+
T Consensus       865 ~~~~~~~~tkl~~~i~~~es~ie~~  889 (1141)
T KOG0018|consen  865 LRRLVKELTKLDKEITSIESKIERK  889 (1141)
T ss_pred             HHHHHHHHHHHhhhhhhhhhHHHHH
Confidence            4444444444444443333333333

>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site

Probab=97.83  E-value=0.083  Score=60.59  Aligned_cols=91  Identities=15%  Similarity=0.381  Sum_probs=68.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 046695          468 EIEQLKASIAERDKHIENLNRSLDSLKAERDRLESDVISRDDRMDQMEKHLQQLHMEHTELIKGAEDAHRMVGELRLKAK  547 (604)
Q Consensus       468 eIs~lk~el~e~~~~Le~L~~ek~~Le~el~~Leqe~~s~r~~I~emE~~L~qLr~E~e~le~~l~elk~kl~ELK~rv~  547 (604)
                      ....+...+..+...+..+......-..-.+.+...+......+..+++....+......+......++.++..++..+.
T Consensus       345 ~~~~l~~~l~~l~~~~~~~~~~i~~~~~~yS~i~~~l~~~~~~l~~ie~~q~~~~~~l~~L~~dE~~Ar~~l~~~~~~l~  424 (560)
T PF06160_consen  345 IVRELEKQLKELEKRYEDLEERIEEQQVPYSEIQEELEEIEEQLEEIEEEQEEINESLQSLRKDEKEAREKLQKLKQKLR  424 (560)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444445555555555555444444555567777888888888888888888888888888888999999999999999


Q ss_pred             HHHHHHHHHHH
Q 046695          548 ELEEEIEKQRV  558 (604)
Q Consensus       548 eLeEeve~qk~  558 (604)
                      ++...+++.++
T Consensus       425 ~ikR~lek~nL  435 (560)
T PF06160_consen  425 EIKRRLEKSNL  435 (560)
T ss_pred             HHHHHHHHcCC
Confidence            99999988876

EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane

>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]

Probab=97.82  E-value=0.17  Score=61.40  Aligned_cols=11  Identities=27%  Similarity=0.739  Sum_probs=7.5

Q ss_pred             ccccccccccc
Q 046695            9 MESRKSHSWWW   19 (604)
Q Consensus         9 ~~~~~~~~~~~   19 (604)
                      ..-++.+-||-
T Consensus       256 g~yG~ecDwWS  266 (1317)
T KOG0612|consen  256 GEYGRECDWWS  266 (1317)
T ss_pred             cccCCccchhh
Confidence            45677788884

>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]

Probab=97.77  E-value=0.04  Score=60.57  Aligned_cols=49  Identities=14%  Similarity=0.154  Sum_probs=22.6

Q ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 046695          499 RLESDVISRDDRMDQMEKHLQQLHMEHTELIKGAEDAHRMVGELRLKAK  547 (604)
Q Consensus       499 ~Leqe~~s~r~~I~emE~~L~qLr~E~e~le~~l~elk~kl~ELK~rv~  547 (604)
                      .|..-+.++..-...++..|..-+...+++-.....++..+..+.....
T Consensus       200 kl~~~~~E~kk~~~~l~~~l~~~q~~l~eL~~~~~~L~~~Ias~e~~aA  248 (420)
T COG4942         200 KLAQLLEERKKTLAQLNSELSADQKKLEELRANESRLKNEIASAEAAAA  248 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence            3333344444444455555555555545444444444444444443333

>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function

Probab=97.74  E-value=0.14  Score=59.07  Aligned_cols=231  Identities=22%  Similarity=0.303  Sum_probs=116.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH----HHHHHHHHhhhhh
Q 046695          318 EELRITKEKLMLSEAEIASLKQEVESNRSEKIQTLQNQLQLAQKDIATWKSKLNSERKEVSKL----QERIKSLKTSLSD  393 (604)
Q Consensus       318 eEL~~~~eeL~~se~eI~~Lk~EL~sl~~~kieqLq~eLe~~q~eie~i~~kLE~e~~ei~~L----qeeI~eLk~qlq~  393 (604)
                      .++..+...|..+..+|..+..++..+ ...+.++..++.......+.+...+. ....+..|    +.-|..|+.-++.
T Consensus       328 ~el~~l~~~l~~l~~~i~~~~~~~~~l-~~~~~q~~~e~~~~~~~~~~le~~~~-l~~k~~~lL~d~e~ni~kL~~~v~~  405 (594)
T PF05667_consen  328 QELEELQEQLDELESQIEELEAEIKML-KSSLKQLEEELEEKEAENEELEEELK-LKKKTVELLPDAEENIAKLQALVEA  405 (594)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcCcHHHHHHHHHHHHH
Confidence            333333334444444444444444333 33344444444444444444433332 11111111    2334444444444


Q ss_pred             HHHHHHHHHHHHHHHHhhhchHHHh-------HHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHH----
Q 046695          394 RDHEVRDLKMAVSDAEQKIFPEKAQ-------IKAEILGLYEEKACLVEQLREWESRGRSLEDELRIIKTQKTELE----  462 (604)
Q Consensus       394 leeeI~eLk~~l~d~eekls~eKa~-------l~~ei~~LqEk~~sLe~eL~ele~~i~sLe~eIkql~~E~~e~e----  462 (604)
                      ....+..|........--+..+...       ...+..+...++..++.++..+...++.-++.++++..++..+-    
T Consensus       406 s~~rl~~L~~qWe~~R~pL~~e~r~lk~~~~~~~~e~~~~~~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e~~~k~~~  485 (594)
T PF05667_consen  406 SEQRLVELAQQWEKHRAPLIEEYRRLKEKASNRESESKQKLQEIKELREEIKEIEEEIRQKEELYKQLVKELEKLPKDVN  485 (594)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence            4444444444333322222222222       33445556666677777777777777776777777666662211    


Q ss_pred             --------HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH-------HHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 046695          463 --------ERIVGEIEQLKASIAERDKHIENLNRSLDSLKAERD-------RLESDVISRDDRMDQMEKHLQQLHMEHTE  527 (604)
Q Consensus       463 --------~~le~eIs~lk~el~e~~~~Le~L~~ek~~Le~el~-------~Leqe~~s~r~~I~emE~~L~qLr~E~e~  527 (604)
                              +++.+.|.+=+.+|..+-.+...|.++...+.+.+.       ++-=.-...+......=+.|..|+.....
T Consensus       486 Rs~Yt~RIlEIv~NI~KQk~eI~KIl~DTr~lQkeiN~l~gkL~RtF~v~dElifrdAKkDe~~rkaYK~La~lh~~c~~  565 (594)
T PF05667_consen  486 RSAYTRRILEIVKNIRKQKEEIEKILSDTRELQKEINSLTGKLDRTFTVTDELIFRDAKKDEAARKAYKLLASLHENCSQ  565 (594)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHH
Confidence                    145666666666666666666666666666666554       22222233556666666678888887777


Q ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 046695          528 LIKGAEDAHRMVGELRLKAKELEEEIE  554 (604)
Q Consensus       528 le~~l~elk~kl~ELK~rv~eLeEeve  554 (604)
                      |...+.+    .+.+...+.+|++.|+
T Consensus       566 Li~~v~~----tG~~~rEirdLe~qI~  588 (594)
T PF05667_consen  566 LIETVEE----TGTISREIRDLEEQID  588 (594)
T ss_pred             HHHHHHH----hhHHHHHHHHHHHHHH
Confidence            7765543    3334444455555554

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes

Probab=97.73  E-value=0.03  Score=65.58  Aligned_cols=68  Identities=19%  Similarity=0.254  Sum_probs=44.5

Q ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 046695          495 AERDRLESDVISRDDRMDQMEKHLQQLHMEHTELIKGAEDAHRMVGELRLKAKELEEEIEKQRVVILE  562 (604)
Q Consensus       495 ~el~~Leqe~~s~r~~I~emE~~L~qLr~E~e~le~~l~elk~kl~ELK~rv~eLeEeve~qk~~i~~  562 (604)
                      .+...|...+..+.++-..||+.|..=.+=+..|=.-+++++..+.-+...+..-+.+|..+|.-|.+
T Consensus       587 ~~~e~L~~aL~amqdk~~~LE~sLsaEtriKldLfsaLg~akrq~ei~~~~~~~~d~ei~~lk~ki~~  654 (697)
T PF09726_consen  587 KDTEVLMSALSAMQDKNQHLENSLSAETRIKLDLFSALGDAKRQLEIAQGQLRKKDKEIEELKAKIAQ  654 (697)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34555666666666666677777766666666666666777777777777777777777666665543

; GO: 0016021 integral to membrane

>PF14662 CCDC155: Coiled-coil region of CCDC155

Probab=97.73  E-value=0.034  Score=55.13  Aligned_cols=113  Identities=25%  Similarity=0.309  Sum_probs=59.0

Q ss_pred             HHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 046695          423 ILGLYEEKACLVEQLREWESRGRSLEDELRIIKTQKTELEERIVGEIEQLKASIAERDKHIENLNRSLDSLKAERDRLES  502 (604)
Q Consensus       423 i~~LqEk~~sLe~eL~ele~~i~sLe~eIkql~~E~~e~e~~le~eIs~lk~el~e~~~~Le~L~~ek~~Le~el~~Leq  502 (604)
                      ...+.+...+|-..-..+++..++|..+|..++.+.           .++..+.+.+......|..+...++..+-.-+.
T Consensus        76 ~~~lEE~~~~L~aq~rqlEkE~q~L~~~i~~Lqeen-----------~kl~~e~~~lk~~~~eL~~~~~~Lq~Ql~~~e~  144 (193)
T PF14662_consen   76 AKSLEEENRSLLAQARQLEKEQQSLVAEIETLQEEN-----------GKLLAERDGLKKRSKELATEKATLQRQLCEFES  144 (193)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------hHHHHhhhhHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            334444444444444444444444444444444444           333444444455555565566666666555555


Q ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 046695          503 DVISRDDRMDQMEKHLQQLHMEHTELIKGAEDAHRMVGELRLKAKELEEEI  553 (604)
Q Consensus       503 e~~s~r~~I~emE~~L~qLr~E~e~le~~l~elk~kl~ELK~rv~eLeEev  553 (604)
                      -+-.++..+.+...++.+|..-++.....       ..+||..++.|++.+
T Consensus       145 l~~~~da~l~e~t~~i~eL~~~ieEy~~~-------teeLR~e~s~LEeql  188 (193)
T PF14662_consen  145 LICQRDAILSERTQQIEELKKTIEEYRSI-------TEELRLEKSRLEEQL  188 (193)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
Confidence            55555666666666666665555544444       455555555555544

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.73  E-value=0.041  Score=64.06  Aligned_cols=95  Identities=19%  Similarity=0.279  Sum_probs=51.3

Q ss_pred             HhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 046695          424 LGLYEEKACLVEQLREWESRGRSLEDELRIIKTQKTELEERIVGEIEQLKASIAERDKHIENLNRSLDSLKAERDRLESD  503 (604)
Q Consensus       424 ~~LqEk~~sLe~eL~ele~~i~sLe~eIkql~~E~~e~e~~le~eIs~lk~el~e~~~~Le~L~~ek~~Le~el~~Leqe  503 (604)
                      .+.++.+..+...+.+...++..+..++.++++++   + .+...|+.....+...+..=..+..+...+++++..|.++
T Consensus       788 ~~~qeqv~El~~~l~e~~~~l~~~q~e~~~~keq~---~-t~~~~tsa~a~~le~m~~~~~~la~e~~~ieq~ls~l~~~  863 (970)
T KOG0946|consen  788 LGDQEQVIELLKNLSEESTRLQELQSELTQLKEQI---Q-TLLERTSAAADSLESMGSTEKNLANELKLIEQKLSNLQEK  863 (970)
T ss_pred             hhhHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHH---H-HHHHHHHhhhhhhHHhhccccchhhHHHHHHHHHHHHHHH
Confidence            34445555555557777777777777777777776   3 3333444444444444433334444555555555555555


Q ss_pred             HHhHHHHHHHHHHHHHHHH
Q 046695          504 VISRDDRMDQMEKHLQQLH  522 (604)
Q Consensus       504 ~~s~r~~I~emE~~L~qLr  522 (604)
                      +....+.|..+-..+..+.
T Consensus       864 ~k~~~nli~~ltEk~~sl~  882 (970)
T KOG0946|consen  864 IKFGNNLIKELTEKISSLE  882 (970)
T ss_pred             hhhhhhHHHHHhhhhhhHH
Confidence            5555555555444444433

>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]

Probab=97.72  E-value=0.23  Score=60.03  Aligned_cols=43  Identities=19%  Similarity=0.453  Sum_probs=20.3

Q ss_pred             HHHHHHHHHHHHHhhhcchHHHH--------HHhhhcchhHHHHHHHHHHHHHH
Q 046695           37 EMDQSVKRMLKLIEEDGDSFAKK--------AEMYYQKRPELISHVEEFYRMYR   82 (604)
Q Consensus        37 ~~~~~~~~~l~~i~~d~ds~a~~--------ae~y~~~rp~l~~~v~~~~~~y~   82 (604)
                      +....|..+|.+   |.|.|-.-        +......-|+.-.+|.+++....
T Consensus       118 ~v~~~i~~llgl---d~~~f~~~v~l~QGe~~~fl~~~~~er~~il~~l~~l~~  168 (908)
T COG0419         118 DVNEKIEELLGL---DKDTFTRSVYLPQGEFDAFLKSKPKERKEILDELFGLEK  168 (908)
T ss_pred             hHHHHHHHHhCC---CHHHHhHHheeccHhHHHHHhcCcHHHHHHHHHHhCchh
Confidence            666666666655   44444422        22223333435555555554443

>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function

Probab=97.71  E-value=0.12  Score=59.73  Aligned_cols=80  Identities=16%  Similarity=0.206  Sum_probs=48.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhHHHHHhhHHHHHH
Q 046695          511 MDQMEKHLQQLHMEHTELIKGAEDAHRMVGELRLKAKELEEEIEKQRVVILEGAEEKREAIRQLCFSLEHYRSGYISLRK  590 (604)
Q Consensus       511 I~emE~~L~qLr~E~e~le~~l~elk~kl~ELK~rv~eLeEeve~qk~~i~~~aEeKreAIrQlcfslehyR~~y~~L~~  590 (604)
                      |-++=..|+..+.++.++-.+...+++.++.+..++.-   .+--....|.--|- |.++-|+.=-.|--++++|..|-+
T Consensus       493 IlEIv~NI~KQk~eI~KIl~DTr~lQkeiN~l~gkL~R---tF~v~dElifrdAK-kDe~~rkaYK~La~lh~~c~~Li~  568 (594)
T PF05667_consen  493 ILEIVKNIRKQKEEIEKILSDTRELQKEINSLTGKLDR---TFTVTDELIFRDAK-KDEAARKAYKLLASLHENCSQLIE  568 (594)
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---HHHHHHHHHHHHhh-cCHHHHHHHHHHHHHHHHHHHHHH
Confidence            33443444444444444444444444444444443332   23333555666666 999999999999999999999987


Q ss_pred             HHhc
Q 046695          591 AVIG  594 (604)
Q Consensus       591 ~~~g  594 (604)
                      .+..
T Consensus       569 ~v~~  572 (594)
T PF05667_consen  569 TVEE  572 (594)
T ss_pred             HHHH
Confidence            7653

>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]

Probab=97.68  E-value=0.17  Score=57.33  Aligned_cols=111  Identities=19%  Similarity=0.325  Sum_probs=75.3

Q ss_pred             HHHhhhhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 046695          294 ELQEGINGLETPSLDLDNKVKALMEELRITKEKLMLSEAEIASLKQEVES--NRSEKIQTLQNQLQLAQKDIATWKSKLN  371 (604)
Q Consensus       294 ~Lq~~I~eLE~el~el~~kl~~L~eEL~~~~eeL~~se~eI~~Lk~EL~s--l~~~kieqLq~eLe~~q~eie~i~~kLE  371 (604)
                      +.+.-+..+++..+.....+..++.++.....++..+..++..|++.+..  +--...+.+..+.+.+...++.+..+++
T Consensus       277 K~~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q~iS~~dve~mn~Er~~l~r~l~~i~~~~d  356 (581)
T KOG0995|consen  277 KFQAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIELQGISGEDVERMNLERNKLKRELNKIQSELD  356 (581)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66666666666666677777788888877777777777777777776531  1123578888888888888888888888


Q ss_pred             HHHHHHHHHH----HHHHHHHhhhhhHHHHHHHHHHH
Q 046695          372 SERKEVSKLQ----ERIKSLKTSLSDRDHEVRDLKMA  404 (604)
Q Consensus       372 ~e~~ei~~Lq----eeI~eLk~qlq~leeeI~eLk~~  404 (604)
                      ...+++-.+.    .....+.+.+.++...+..+.-.
T Consensus       357 ~l~k~vw~~~l~~~~~f~~le~~~~~~~~l~~~i~l~  393 (581)
T KOG0995|consen  357 RLSKEVWELKLEIEDFFKELEKKFIDLNSLIRRIKLG  393 (581)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8887766553    44455555555555555555443

>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants

Probab=97.68  E-value=0.17  Score=59.85  Aligned_cols=120  Identities=21%  Similarity=0.288  Sum_probs=64.8

Q ss_pred             HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhc
Q 046695          334 IASLKQEVESNRSEKIQTLQNQLQLAQKDIATWKSKLNSERKEVSKLQERIKSLKTSLSDRDHEVRDLKMAVSDAEQKIF  413 (604)
Q Consensus       334 I~~Lk~EL~sl~~~kieqLq~eLe~~q~eie~i~~kLE~e~~ei~~LqeeI~eLk~qlq~leeeI~eLk~~l~d~eekls  413 (604)
                      ...+..+++.+ ......+...+..+...++..+.+|.+....+..|+.++..++......+.++...+..+..++-++.
T Consensus       591 ~~el~eelE~l-e~eK~~Le~~L~~~~d~lE~~~~qL~E~E~~L~eLq~eL~~~keS~s~~E~ql~~~~e~~e~le~~~~  669 (769)
T PF05911_consen  591 KKELEEELEKL-ESEKEELEMELASCQDQLESLKNQLKESEQKLEELQSELESAKESNSLAETQLKAMKESYESLETRLK  669 (769)
T ss_pred             HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence            33444444444 33345555555555555555555555555555555555555555555555555555444444444432


Q ss_pred             hHHHhHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh
Q 046695          414 PEKAQIKAEILGLYEEKACLVEQLREWESRGRSLEDELRIIKTQK  458 (604)
Q Consensus       414 ~eKa~l~~ei~~LqEk~~sLe~eL~ele~~i~sLe~eIkql~~E~  458 (604)
                      .    +.+++..++.++..|+.+|..-..-...+..+-..++.++
T Consensus       670 ~----~e~E~~~l~~Ki~~Le~Ele~er~~~~e~~~kc~~Le~el  710 (769)
T PF05911_consen  670 D----LEAEAEELQSKISSLEEELEKERALSEELEAKCRELEEEL  710 (769)
T ss_pred             H----HHHHHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHH
Confidence            2    4466777777888888887766555555555555544444

The function of this family is unknown.

>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]

Probab=97.66  E-value=0.11  Score=62.94  Aligned_cols=22  Identities=45%  Similarity=0.877  Sum_probs=15.3

Q ss_pred             HhhhcchhHHHHHHHHHHHHHHHHHHHhhhhh
Q 046695           61 EMYYQKRPELISHVEEFYRMYRSLAERYDHVT   92 (604)
Q Consensus        61 e~y~~~rp~l~~~v~~~~~~y~~laeryd~~~   92 (604)
                      ||.|.-=|        ||-  -+|.+.|..+.
T Consensus       273 EMlyG~TP--------FYa--dslveTY~KIm  294 (1317)
T KOG0612|consen  273 EMLYGETP--------FYA--DSLVETYGKIM  294 (1317)
T ss_pred             HHHcCCCc--------chH--HHHHHHHHHHh
Confidence            55566666        664  47888888875

>PF14662 CCDC155: Coiled-coil region of CCDC155

Probab=97.65  E-value=0.058  Score=53.51  Aligned_cols=123  Identities=20%  Similarity=0.241  Sum_probs=67.8

Q ss_pred             HHHHHHHHHHHHHHHhhhchHHHh---HHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHH
Q 046695          395 DHEVRDLKMAVSDAEQKIFPEKAQ---IKAEILGLYEEKACLVEQLREWESRGRSLEDELRIIKTQKTELEERIVGEIEQ  471 (604)
Q Consensus       395 eeeI~eLk~~l~d~eekls~eKa~---l~~ei~~LqEk~~sLe~eL~ele~~i~sLe~eIkql~~E~~e~e~~le~eIs~  471 (604)
                      ++++.+|+..+..+++.-..+.++   +.-+...|..++..|..+...+.....-+..++.++..+.   . .+..++-.
T Consensus        66 ~eEledLk~~~~~lEE~~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~---~-~Lq~Ql~~  141 (193)
T PF14662_consen   66 EEELEDLKTLAKSLEEENRSLLAQARQLEKEQQSLVAEIETLQEENGKLLAERDGLKKRSKELATEK---A-TLQRQLCE  141 (193)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhh---H-HHHHHHHH
Confidence            344444444444444333333333   3333344444444444444444444445666666665555   2 45555655


Q ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 046695          472 LKASIAERDKHIENLNRSLDSLKAERDRLESDVISRDDRMDQMEKHLQQL  521 (604)
Q Consensus       472 lk~el~e~~~~Le~L~~ek~~Le~el~~Leqe~~s~r~~I~emE~~L~qL  521 (604)
                      ...-+-..+..+.+.......+..-|.....-.+..|..|..++.+|.++
T Consensus       142 ~e~l~~~~da~l~e~t~~i~eL~~~ieEy~~~teeLR~e~s~LEeql~q~  191 (193)
T PF14662_consen  142 FESLICQRDAILSERTQQIEELKKTIEEYRSITEELRLEKSRLEEQLSQM  191 (193)
T ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            55556666666666666667777666666666677777777777777665

>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]

Probab=97.64  E-value=0.3  Score=59.04  Aligned_cols=14  Identities=36%  Similarity=0.598  Sum_probs=7.2

Q ss_pred             hHHHHHHhhhHHHH
Q 046695          189 QGLQRKVNELETEL  202 (604)
Q Consensus       189 ~~l~~~~~~le~e~  202 (604)
                      ..+.+++.+|+...
T Consensus       235 e~l~~~~~el~~~~  248 (908)
T COG0419         235 EALEERLAELEEEK  248 (908)
T ss_pred             HHHHHHHHHHHHHH
Confidence            35555555555544

>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD

Probab=97.64  E-value=0.24  Score=57.74  Aligned_cols=22  Identities=14%  Similarity=0.436  Sum_probs=9.9

Q ss_pred             HHHHHHHHHHhhhhhHHHHHHH
Q 046695          379 KLQERIKSLKTSLSDRDHEVRD  400 (604)
Q Consensus       379 ~LqeeI~eLk~qlq~leeeI~e  400 (604)
                      .|..++..+..++.....++..
T Consensus       266 ~Le~ei~~le~e~~e~~~~l~~  287 (650)
T TIGR03185       266 QLERQLKEIEAARKANRAQLRE  287 (650)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            4444444444444444444443

This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.

>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]

Probab=97.63  E-value=0.22  Score=57.26  Aligned_cols=44  Identities=23%  Similarity=0.188  Sum_probs=27.3

Q ss_pred             cCCCChHHHHHHHHhhHHHHHHHHHhhhhcHHHHHHHHHHHhhh
Q 046695          224 AKNENPEALFARIVGYEKKLRLANEKIHISNEEILRLKIELQKY  267 (604)
Q Consensus       224 ~~~~~~~~l~~~~~~~~~el~~~n~~~~~~e~ei~~lk~ele~~  267 (604)
                      .++..-+++..|++.+++.+-.+-+----+--||.+||.+|.--
T Consensus       399 ~~ssl~~e~~QRva~lEkKvqa~~kERDalr~e~kslk~ela~~  442 (961)
T KOG4673|consen  399 EVSSLREEYHQRVATLEKKVQALTKERDALRREQKSLKKELAAA  442 (961)
T ss_pred             cccchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Confidence            44555677778888888777644443223445677777777653

>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]

Probab=97.61  E-value=0.12  Score=61.85  Aligned_cols=99  Identities=18%  Similarity=0.260  Sum_probs=72.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 046695          466 VGEIEQLKASIAERDKHIENLNRSLDSLKAERDRLESDVISRDDRMDQMEKHLQQLHMEHTELIKGAEDAHRMVGELRLK  545 (604)
Q Consensus       466 e~eIs~lk~el~e~~~~Le~L~~ek~~Le~el~~Leqe~~s~r~~I~emE~~L~qLr~E~e~le~~l~elk~kl~ELK~r  545 (604)
                      ..++.-+...+..-...|.........+++.+..+...+...+..++.|...+..+......+-..+..+...+...+..
T Consensus       380 ~~el~~ln~~~r~~~~~ld~~~~~~~elE~r~k~l~~sver~~~~~~~L~~~i~s~~~~~~e~~~d~~~l~~~~~~~~~~  459 (1141)
T KOG0018|consen  380 LEELEVLNRNMRSDQDTLDHELERRAELEARIKQLKESVERLDKRRNKLAAKITSLSRSYEELKHDLDSLESLVSSAEEE  459 (1141)
T ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHhhhhhh
Confidence            44555566666666666666677777788888888888877888888888888888887777777777777777777777


Q ss_pred             HHHHHHHHHHHHHhhhhhh
Q 046695          546 AKELEEEIEKQRVVILEGA  564 (604)
Q Consensus       546 v~eLeEeve~qk~~i~~~a  564 (604)
                      ...+-+++..-...|++.-
T Consensus       460 ~~e~n~eL~~~~~ql~das  478 (1141)
T KOG0018|consen  460 PYELNEELVEVLDQLLDAS  478 (1141)
T ss_pred             HHHHHHHHHHHHHHHHhhh
Confidence            7777777766666666543

>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD

Probab=97.60  E-value=0.22  Score=57.95  Aligned_cols=45  Identities=20%  Similarity=0.301  Sum_probs=20.4

Q ss_pred             HHhhhhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046695          295 LQEGINGLETPSLDLDNKVKALMEELRITKEKLMLSEAEIASLKQ  339 (604)
Q Consensus       295 Lq~~I~eLE~el~el~~kl~~L~eEL~~~~eeL~~se~eI~~Lk~  339 (604)
                      +...+..++..+..+..++..+..++..+...+..+...+..+..
T Consensus       207 ~~~~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l~~  251 (650)
T TIGR03185       207 ILSEIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLEK  251 (650)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444444444444444444444444444444444444444

This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.

>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]

Probab=97.55  E-value=0.13  Score=60.52  Aligned_cols=59  Identities=22%  Similarity=0.264  Sum_probs=31.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 046695          464 RIVGEIEQLKASIAERDKHIENLNRSLDSLKAERDRLESDVISRDDRMDQMEKHLQQLHMEH  525 (604)
Q Consensus       464 ~le~eIs~lk~el~e~~~~Le~L~~ek~~Le~el~~Leqe~~s~r~~I~emE~~L~qLr~E~  525 (604)
                      .++..+..+.+.-...-.+|.++.++|+.+-+.+..-+   .++...+.+.++.|.+++..+
T Consensus       512 ~lq~~~~~~~qs~~~~~~~l~~~l~~KD~~~~~~~~~~---~e~~~~~~e~e~si~ql~l~~  570 (980)
T KOG0980|consen  512 ELQRTLSNLAQSHNNQLAQLEDLLKQKDRLAAELVARE---EEREALRLEAERSINQLELDS  570 (980)
T ss_pred             HHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH---HHHHHHHHHHHhhHHHhhccc
Confidence            34444555555555555666667777776666554333   222234455555566655553

>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain

Probab=97.53  E-value=0.11  Score=55.03  Aligned_cols=24  Identities=25%  Similarity=0.502  Sum_probs=18.2

Q ss_pred             hHHHHHHhhhHHHHHHHHhhhhhh
Q 046695          189 QGLQRKVNELETELREAKEKLHSQ  212 (604)
Q Consensus       189 ~~l~~~~~~le~e~~~~~~k~~~~  212 (604)
                      ..|..+|..|+.+...++..|...
T Consensus        23 ~~l~~~~~sL~qen~~Lk~El~~e   46 (310)
T PF09755_consen   23 EQLRKRIESLQQENRVLKRELETE   46 (310)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHH
Confidence            578889999998887666666544

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.50  E-value=0.052  Score=63.22  Aligned_cols=37  Identities=16%  Similarity=0.255  Sum_probs=21.3

Q ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 046695          517 HLQQLHMEHTELIKGAEDAHRMVGELRLKAKELEEEI  553 (604)
Q Consensus       517 ~L~qLr~E~e~le~~l~elk~kl~ELK~rv~eLeEev  553 (604)
                      .+..+..|.+.+.-.+...+.++..|+..+.+|...+
T Consensus       905 ki~s~kqeqee~~v~~~~~~~~i~alk~~l~dL~q~~  941 (970)
T KOG0946|consen  905 KIVSNKQEQEELLVLLADQKEKIQALKEALEDLNQPV  941 (970)
T ss_pred             cccchhhhHHHHHHHHhhHHHHHHHHHHHHHHhCCCh
Confidence            3445555555555566666666666666666655444

>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]

Probab=97.49  E-value=0.46  Score=57.46  Aligned_cols=87  Identities=18%  Similarity=0.230  Sum_probs=58.9

Q ss_pred             hhhhccCChhhhhhhhchHHHHhhhhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 046695          275 YLQADFGSPAEINVNMWDAELQEGINGLETPSLDLDNKVKALMEELRITKEKLMLSEAEIASLKQEVESNRSEKIQTLQN  354 (604)
Q Consensus       275 ~~~~~~~~~~e~~~~~~~~~Lq~~I~eLE~el~el~~kl~~L~eEL~~~~eeL~~se~eI~~Lk~EL~sl~~~kieqLq~  354 (604)
                      ++....+.+..|.      .+-+.|..++  +..--.+|..|..+++....+|.+.+.-++..+.-+     .+.++|+.
T Consensus      1483 Flt~~~adp~si~------~vA~~vL~l~--lp~tpeqi~~L~~~I~e~v~sL~nVd~IL~~T~~di-----~ra~~L~s 1549 (1758)
T KOG0994|consen 1483 FLTQPDADPDSIE------EVAEEVLALE--LPLTPEQIQQLTGEIQERVASLPNVDAILSRTKGDI-----ARAENLQS 1549 (1758)
T ss_pred             HhcCCCCCHHHHH------HHHHHHHhcc--CCCCHHHHHHHHHHHHHHHHhcccHHHHHHhhhhhH-----HHHHHHHH
Confidence            4555666777777      6666664443  444457888899999888888888888887776643     35677887


Q ss_pred             HHHHHHHHHHHHHHhhhHHH
Q 046695          355 QLQLAQKDIATWKSKLNSER  374 (604)
Q Consensus       355 eLe~~q~eie~i~~kLE~e~  374 (604)
                      +-..+.+.-+.++.+.+..+
T Consensus      1550 ~A~~a~~~A~~v~~~ae~V~ 1569 (1758)
T KOG0994|consen 1550 EAERARSRAEDVKGQAEDVV 1569 (1758)
T ss_pred             HHHHHHhHHHHHHHHHHHHH
Confidence            77777666665554444444

>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex

Probab=97.47  E-value=0.36  Score=55.68  Aligned_cols=94  Identities=14%  Similarity=0.281  Sum_probs=53.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 046695          467 GEIEQLKASIAERDKHIENLNRSLDSLKAERDRLESDVISRDDRMDQMEKHLQQLHMEHTELIKGAEDAHRMVGELRLKA  546 (604)
Q Consensus       467 ~eIs~lk~el~e~~~~Le~L~~ek~~Le~el~~Leqe~~s~r~~I~emE~~L~qLr~E~e~le~~l~elk~kl~ELK~rv  546 (604)
                      .++..++.++..-.-.-..|......+.-+...+-++...+--.+.-+..+|..-+..-..+-..+..+...-..|+..+
T Consensus       471 kQVeeLKtELE~EkLKN~ELt~~~nkLslEkk~laQE~~~~~~elKk~qedi~~~k~qee~~~kqie~Lee~~~~Lrnel  550 (786)
T PF05483_consen  471 KQVEELKTELEQEKLKNTELTVNCNKLSLEKKQLAQETSDMALELKKQQEDINNSKKQEEKMLKQIENLEETNTQLRNEL  550 (786)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34445555544322222234444444444455555555555555555666666666666666666666666666777777


Q ss_pred             HHHHHHHHHHHHhh
Q 046695          547 KELEEEIEKQRVVI  560 (604)
Q Consensus       547 ~eLeEeve~qk~~i  560 (604)
                      ..+.+++..+...|
T Consensus       551 es~~eel~~k~~Ev  564 (786)
T PF05483_consen  551 ESVKEELKQKGEEV  564 (786)
T ss_pred             HHHHHHHHHHHHHH
Confidence            77777776665544

Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex

>TIGR02680 conserved hypothetical protein TIGR02680

Probab=97.47  E-value=0.25  Score=62.29  Aligned_cols=31  Identities=23%  Similarity=0.091  Sum_probs=23.1

Q ss_pred             hhhhHHHHHHHHhhhHHHHHhhHHHHHHHHh
Q 046695          563 GAEEKREAIRQLCFSLEHYRSGYISLRKAVI  593 (604)
Q Consensus       563 ~aEeKreAIrQlcfslehyR~~y~~L~~~~~  593 (604)
                      .+++++..-+++++...+.|..-..+.+.|+
T Consensus       960 ~a~~~~~~a~~~~~~~~~~~~~~~~~~~e~~  990 (1353)
T TIGR02680       960 RAEEKRAEADATLDERAEARDHAIGQLREFA  990 (1353)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4455557777788888888888877777776

Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.

>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.46  E-value=0.28  Score=55.30  Aligned_cols=150  Identities=23%  Similarity=0.230  Sum_probs=74.2

Q ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 046695          419 IKAEILGLYEEKACLVEQLREWESRGRSLEDELRIIKTQKTELEE---RIVGEIEQLKASIAERDKHIENLNRSLDSLKA  495 (604)
Q Consensus       419 l~~ei~~LqEk~~sLe~eL~ele~~i~sLe~eIkql~~E~~e~e~---~le~eIs~lk~el~e~~~~Le~L~~ek~~Le~  495 (604)
                      +.-.|..+++.+..++.++...+.....+...-.++..-....+.   .+..+|..+|-.=+.+-.+..+|..+-..|+.
T Consensus       105 yl~kI~eleneLKq~r~el~~~q~E~erl~~~~sd~~e~~~~~E~qR~rlr~elKe~KfRE~RllseYSELEEENIsLQK  184 (772)
T KOG0999|consen  105 YLQKILELENELKQLRQELTNVQEENERLEKVHSDLKESNAAVEDQRRRLRDELKEYKFREARLLSEYSELEEENISLQK  184 (772)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence            555566666666666666665555555444433333332211110   12222222222222222333333334444444


Q ss_pred             HHHHHHH---HHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHH
Q 046695          496 ERDRLES---DVISRDDRMDQMEKHLQQLHMEHTELIKGAEDAHRMVGELRLKAKELEEEIEKQRVVILEGAEEKREAIR  572 (604)
Q Consensus       496 el~~Leq---e~~s~r~~I~emE~~L~qLr~E~e~le~~l~elk~kl~ELK~rv~eLeEeve~qk~~i~~~aEeKreAIr  572 (604)
                      .|..|.+   +|+..+-.|+.++....=|+...+..                  ..|.+-.++|=...++-+-.-|++=-
T Consensus       185 qVs~LR~sQVEyEglkheikRleEe~elln~q~ee~------------------~~Lk~IAekQlEEALeTlq~EReqk~  246 (772)
T KOG0999|consen  185 QVSNLRQSQVEYEGLKHEIKRLEEETELLNSQLEEA------------------IRLKEIAEKQLEEALETLQQEREQKN  246 (772)
T ss_pred             HHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence            4444432   33334444444444433333332222                  23455567777777777777788877


Q ss_pred             HHhhhHHHHHhhHH
Q 046695          573 QLCFSLEHYRSGYI  586 (604)
Q Consensus       573 QlcfslehyR~~y~  586 (604)
                      -|---|+|||+...
T Consensus       247 alkkEL~q~~n~e~  260 (772)
T KOG0999|consen  247 ALKKELSQYRNAED  260 (772)
T ss_pred             HHHHHHHHhcchhh
Confidence            78888999998765

>PRK09039 hypothetical protein; Validated

Probab=97.46  E-value=0.025  Score=61.00  Aligned_cols=99  Identities=17%  Similarity=0.211  Sum_probs=66.3

Q ss_pred             HHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 046695          485 NLNRSLDSLKAERDRLESDVISRDDRMDQMEKHLQQLHMEHTELIKGAEDAHRMVGELRLKAKELEEEIEKQRVVILEGA  564 (604)
Q Consensus       485 ~L~~ek~~Le~el~~Leqe~~s~r~~I~emE~~L~qLr~E~e~le~~l~elk~kl~ELK~rv~eLeEeve~qk~~i~~~a  564 (604)
                      .+......+..++..++..+.+..-.|.-+..+|..|+.++..++..+..++....+.+.++..|..++           
T Consensus       113 ~~~~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L-----------  181 (343)
T PRK09039        113 AAEGRAGELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRL-----------  181 (343)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------
Confidence            334444555566666666677777777777777777777766666666666666666666666666666           


Q ss_pred             hhHHHHHHHHhhhHHHHHhhH-HHHHHHHhcCCC
Q 046695          565 EEKREAIRQLCFSLEHYRSGY-ISLRKAVIGHKG  597 (604)
Q Consensus       565 EeKreAIrQlcfslehyR~~y-~~L~~~~~gh~~  597 (604)
                         ..||-+---.|+.||+.+ .+||+++.+...
T Consensus       182 ---~~a~~~~~~~l~~~~~~~~~~l~~~~~~~~~  212 (343)
T PRK09039        182 ---NVALAQRVQELNRYRSEFFGRLREILGDREG  212 (343)
T ss_pred             ---HHHHHHHHHHHHHhHHHHHHHHHHHhCCCCC
Confidence               344444556789999988 789888887643

>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]

Probab=97.46  E-value=0.25  Score=53.57  Aligned_cols=37  Identities=22%  Similarity=0.331  Sum_probs=20.6

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 046695          308 DLDNKVKALMEELRITKEKLMLSEAEIASLKQEVESN  344 (604)
Q Consensus       308 el~~kl~~L~eEL~~~~eeL~~se~eI~~Lk~EL~sl  344 (604)
                      .+.-++..+..++..+...+...+.+-+....|+...
T Consensus        78 di~~qlr~~rtel~~a~~~k~~~e~er~~~~~El~~~  114 (499)
T COG4372          78 DIRPQLRALRTELGTAQGEKRAAETEREAARSELQKA  114 (499)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445555566666665555555555555555555544

>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.44  E-value=0.17  Score=52.73  Aligned_cols=83  Identities=14%  Similarity=0.142  Sum_probs=51.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 046695          468 EIEQLKASIAERDKHIENLNRSLDSLKAERDRLESDVISRDDRMDQMEKHLQQLHMEHTELIKGAEDAHRMVGELRLKAK  547 (604)
Q Consensus       468 eIs~lk~el~e~~~~Le~L~~ek~~Le~el~~Leqe~~s~r~~I~emE~~L~qLr~E~e~le~~l~elk~kl~ELK~rv~  547 (604)
                      ++.....=+.--...|+.....+..|+..-..+...+.+.-....+++..+.+|..++.+....+..+.-....+...+.
T Consensus       135 RvtAi~~iv~aDk~ile~qk~dk~~Le~kq~~l~~~~e~l~al~~e~e~~~~~L~~qk~e~~~l~~~~aa~~a~~~~e~a  214 (265)
T COG3883         135 RVTAISVIVDADKKILEQQKEDKKSLEEKQAALEDKLETLVALQNELETQLNSLNSQKAEKNALIAALAAKEASALGEKA  214 (265)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence            33333333333344455555566666666666666666666777777777777777777777766666666666666666


Q ss_pred             HHH
Q 046695          548 ELE  550 (604)
Q Consensus       548 eLe  550 (604)
                      .|.
T Consensus       215 ~l~  217 (265)
T COG3883         215 ALE  217 (265)
T ss_pred             HHH
Confidence            666

>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.43  E-value=0.43  Score=55.69  Aligned_cols=73  Identities=22%  Similarity=0.305  Sum_probs=35.2

Q ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 046695          419 IKAEILGLYEEKACLVEQLREWESRGRSLEDELRIIKTQKTELEERIVGEIEQLKASIAERDKHIENLNRSLDSLKA  495 (604)
Q Consensus       419 l~~ei~~LqEk~~sLe~eL~ele~~i~sLe~eIkql~~E~~e~e~~le~eIs~lk~el~e~~~~Le~L~~ek~~Le~  495 (604)
                      ++.++..|..++..|..++......+......|.......   + -...+|.++++.|.++...|.-|--++..+..
T Consensus       442 l~~eletLn~k~qqls~kl~Dvr~~~tt~kt~ie~~~~q~---e-~~isei~qlqarikE~q~kl~~l~~Ekq~l~~  514 (1118)
T KOG1029|consen  442 LQQELETLNFKLQQLSGKLQDVRVDITTQKTEIEEVTKQR---E-LMISEIDQLQARIKELQEKLQKLAPEKQELNH  514 (1118)
T ss_pred             HHHHHHHHHHHHHHHhhhhhhheeccchHHHHHHHhhhHH---H-HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence            4444444444444444444444444444444444444444   2 23345555555555555555555444444444

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

Probab=97.40  E-value=0.018  Score=59.07  Aligned_cols=40  Identities=23%  Similarity=0.305  Sum_probs=19.2

Q ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh
Q 046695          419 IKAEILGLYEEKACLVEQLREWESRGRSLEDELRIIKTQK  458 (604)
Q Consensus       419 l~~ei~~LqEk~~sLe~eL~ele~~i~sLe~eIkql~~E~  458 (604)
                      ++.++..+.+++..+..++..+...+..++..+..+....
T Consensus       108 le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~~~~  147 (239)
T COG1579         108 LEDELAELMEEIEKLEKEIEDLKERLERLEKNLAEAEARL  147 (239)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444555555555555555544444444444444443333

>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]

Probab=97.39  E-value=0.61  Score=56.52  Aligned_cols=17  Identities=6%  Similarity=0.395  Sum_probs=9.6

Q ss_pred             HhHHHHHHHHHHHHHHH
Q 046695           33 ENLEEMDQSVKRMLKLI   49 (604)
Q Consensus        33 ~~l~~~~~~~~~~l~~i   49 (604)
                      +...+|++|++.+-+++
T Consensus      1201 s~f~~me~kl~~ir~il 1217 (1758)
T KOG0994|consen 1201 SRFLDMEEKLEEIRAIL 1217 (1758)
T ss_pred             hHHHHHHHHHHHHHHHh
Confidence            44455666666555555

>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins

Probab=97.39  E-value=0.0023  Score=75.16  Aligned_cols=45  Identities=18%  Similarity=0.346  Sum_probs=32.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhHHHHH
Q 046695          534 DAHRMVGELRLKAKELEEEIEKQRVVILEGAEEKREAIRQLCFSLEHYR  582 (604)
Q Consensus       534 elk~kl~ELK~rv~eLeEeve~qk~~i~~~aEeKreAIrQlcfslehyR  582 (604)
                      .....+++|+.+|..++.+..++|.+-..-.    .-+|.-||+|==|+
T Consensus       603 ~~~~e~~~l~~~~~~~ekr~~RLkevf~~ks----~eFr~av~~llGyk  647 (722)
T PF05557_consen  603 SQEKEIAELKAELASAEKRNQRLKEVFKAKS----QEFREAVYSLLGYK  647 (722)
T ss_dssp             ---HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHSEE
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHhcce
Confidence            3455688999999999999999998886544    44666688875443

The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.

>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=97.38  E-value=0.028  Score=53.49  Aligned_cols=63  Identities=21%  Similarity=0.296  Sum_probs=33.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhh
Q 046695          350 QTLQNQLQLAQKDIATWKSKLNSERKEVSKLQERIKSLKTSLSDRDHEVRDLKMAVSDAEQKI  412 (604)
Q Consensus       350 eqLq~eLe~~q~eie~i~~kLE~e~~ei~~LqeeI~eLk~qlq~leeeI~eLk~~l~d~eekl  412 (604)
                      ..|+-+.+.+..+.+.+..++.....+...+..+|..|..+++.++.+|..+...+..+...+
T Consensus         3 ~~lk~E~d~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~l   65 (143)
T PF12718_consen    3 QALKLEADNAQDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKL   65 (143)
T ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444555555555555555555555555555555555555555555555555555544444

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].

>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure

Probab=97.37  E-value=0.43  Score=54.24  Aligned_cols=145  Identities=19%  Similarity=0.235  Sum_probs=70.6

Q ss_pred             HHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 046695          423 ILGLYEEKACLVEQLREWESRGRSLEDELRIIKTQKTELEERIVGEIEQLKASIAERDKHIENLNRSLDSLKAERDRLES  502 (604)
Q Consensus       423 i~~LqEk~~sLe~eL~ele~~i~sLe~eIkql~~E~~e~e~~le~eIs~lk~el~e~~~~Le~L~~ek~~Le~el~~Leq  502 (604)
                      +-.+..+...++.++..++.++..+..++.+.+.++       .++...+......+...+......    +.++..+..
T Consensus       276 l~~l~~E~~~~~ee~~~l~~Qi~~l~~e~~d~e~~~-------~~~~~~~~~~~~~~~~~~~~~~~~----e~e~~l~~~  344 (511)
T PF09787_consen  276 LEELKQERDHLQEEIQLLERQIEQLRAELQDLEAQL-------EGEQESFREQPQELSQQLEPELTT----EAELRLYYQ  344 (511)
T ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HhHHHHHHHHHHHHHHHHHHHhch----HHHHHHHHH
Confidence            334444444444444444444444444444444443       344444444444444444333222    444555555


Q ss_pred             HHHhHHHHHHH-----------HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHH
Q 046695          503 DVISRDDRMDQ-----------MEKHLQQLHMEHTELIKGAEDAHRMVGELRLKAKELEEEIEKQRVVILEGAEEKREAI  571 (604)
Q Consensus       503 e~~s~r~~I~e-----------mE~~L~qLr~E~e~le~~l~elk~kl~ELK~rv~eLeEeve~qk~~i~~~aEeKreAI  571 (604)
                      +++..+..+..           .+.++..|+.......     -...-.++..++..|.+.+-..-.++--+.-||..  
T Consensus       345 el~~~~ee~~~~~s~~~~k~~~ke~E~q~lr~~l~~~~-----~~s~~~elE~rl~~lt~~Li~KQ~~lE~l~~ek~a--  417 (511)
T PF09787_consen  345 ELYHYREELSRQKSPLQLKLKEKESEIQKLRNQLSARA-----SSSSWNELESRLTQLTESLIQKQTQLESLGSEKNA--  417 (511)
T ss_pred             HHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHh-----ccCCcHhHHHHHhhccHHHHHHHHHHHHHHhhhhh--
Confidence            55555443332           2223333322222111     00123567777777777775555555566667754  


Q ss_pred             HHHhhhHHHHHhhHHH
Q 046695          572 RQLCFSLEHYRSGYIS  587 (604)
Q Consensus       572 rQlcfslehyR~~y~~  587 (604)
                        |+|.||....-|+.
T Consensus       418 --l~lqlErl~~~l~~  431 (511)
T PF09787_consen  418 --LRLQLERLETQLKE  431 (511)
T ss_pred             --ccccHHHHHHHHHh
Confidence              67778877777665

They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].

>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms

Probab=97.34  E-value=4.7e-05  Score=88.98  Aligned_cols=22  Identities=14%  Similarity=0.218  Sum_probs=0.0

Q ss_pred             hhhhcHHHHHHHHHHHhhhccc
Q 046695          249 KIHISNEEILRLKIELQKYNSS  270 (604)
Q Consensus       249 ~~~~~e~ei~~lk~ele~~~~~  270 (604)
                      ++..++.+|.++|..|+.+...
T Consensus       309 r~~klE~~ve~YKkKLed~~~l  330 (713)
T PF05622_consen  309 RADKLENEVEKYKKKLEDLEDL  330 (713)
T ss_dssp             ----------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            4555777777777777766433

The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.

>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins

Probab=97.25  E-value=0.0017  Score=76.15  Aligned_cols=26  Identities=19%  Similarity=0.064  Sum_probs=0.0

Q ss_pred             HHHhHHHHHHHHHHHHHHHHHhhhhH
Q 046695          422 EILGLYEEKACLVEQLREWESRGRSL  447 (604)
Q Consensus       422 ei~~LqEk~~sLe~eL~ele~~i~sL  447 (604)
                      .++++.-.+.-+..+..++...+.+.
T Consensus       400 ~~~RLerq~~L~~kE~d~LR~~L~sy  425 (722)
T PF05557_consen  400 LIRRLERQKALATKERDYLRAQLKSY  425 (722)
T ss_dssp             --------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            33444444444444444444444433

The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.

>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease

Probab=97.19  E-value=0.17  Score=50.58  Aligned_cols=126  Identities=22%  Similarity=0.313  Sum_probs=74.8

Q ss_pred             HHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 046695          422 EILGLYEEKACLVEQLREWESRGRSLEDELRIIKTQKTELEERIVGEIEQLKASIAERDKHIENLNRSLDSLKAERDRLE  501 (604)
Q Consensus       422 ei~~LqEk~~sLe~eL~ele~~i~sLe~eIkql~~E~~e~e~~le~eIs~lk~el~e~~~~Le~L~~ek~~Le~el~~Le  501 (604)
                      -+++-.+++..|+..+.......+.++..+++...++   . .+...+..+++-..+  .   .| .+++.+..++..+.
T Consensus        62 ll~~h~eEvr~Lr~~LR~~q~~~r~~~~klk~~~~el---~-k~~~~l~~L~~L~~d--k---nL-~eReeL~~kL~~~~  131 (194)
T PF15619_consen   62 LLQRHNEEVRVLRERLRKSQEQERELERKLKDKDEEL---L-KTKDELKHLKKLSED--K---NL-AEREELQRKLSQLE  131 (194)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H-HHHHHHHHHHHHHHc--C---Cc-hhHHHHHHHHHHHH
Confidence            4555566666666666666666666666666666555   2 222222222221110  0   11 14677777888888


Q ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 046695          502 SDVISRDDRMDQMEKHLQQLHMEHTELIKGAEDAHRMVGELRLKAKELEEEIEKQRVVI  560 (604)
Q Consensus       502 qe~~s~r~~I~emE~~L~qLr~E~e~le~~l~elk~kl~ELK~rv~eLeEeve~qk~~i  560 (604)
                      ..+...+..|..++.++.-...-   ....+..-..+..++...+..+..+|..++..|
T Consensus       132 ~~l~~~~~ki~~Lek~leL~~k~---~~rql~~e~kK~~~~~~~~~~l~~ei~~L~~kl  187 (194)
T PF15619_consen  132 QKLQEKEKKIQELEKQLELENKS---FRRQLASEKKKHKEAQEEVKSLQEEIQRLNQKL  187 (194)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88888888888887765443332   334445556677777777777777777666555

>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]

Probab=97.17  E-value=1.2  Score=55.20  Aligned_cols=103  Identities=20%  Similarity=0.278  Sum_probs=57.4

Q ss_pred             hHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-----hh
Q 046695          489 SLDSLKAERDRLESDVISRDDRMDQMEKHLQQLHMEHTELIKGAEDAHRMVGELRLKAKELEEEIEKQRVVIL-----EG  563 (604)
Q Consensus       489 ek~~Le~el~~Leqe~~s~r~~I~emE~~L~qLr~E~e~le~~l~elk~kl~ELK~rv~eLeEeve~qk~~i~-----~~  563 (604)
                      ++-.+..++..++.+....+.+|..+.  +...+.++..|......+--..+.+-..+..++..+.+.+..+.     +.
T Consensus      1009 ~~~~l~~q~~e~~re~~~ld~Qi~~~~--~~~~~ee~~~L~~~~~~l~se~~~~lg~~ke~e~~i~~~k~eL~~~~~kd~ 1086 (1294)
T KOG0962|consen 1009 TLRNLERKLKELERELSELDKQILEAD--IKSVKEERVKLEEEREKLSSEKNLLLGEMKQYESQIKKLKQELREKDFKDA 1086 (1294)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhH--HHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHhhhhhhccH
Confidence            334445555566666666665555554  44444555555555555555566666667777777777777666     44


Q ss_pred             hhhHHHHHHHH---hhhHHHHHhhHHHHHHHHh
Q 046695          564 AEEKREAIRQL---CFSLEHYRSGYISLRKAVI  593 (604)
Q Consensus       564 aEeKreAIrQl---cfslehyR~~y~~L~~~~~  593 (604)
                      ++.=|.|+=++   =|+.+|-=--|+-|.+|+.
T Consensus      1087 ~~nyr~~~ie~~tt~~~~~DL~ky~~aLD~Aim 1119 (1294)
T KOG0962|consen 1087 EKNYRKALIELKTTELSNKDLDKYYKALDKAIM 1119 (1294)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55555554443   2333333333455666654

>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []

Probab=97.11  E-value=0.98  Score=53.20  Aligned_cols=10  Identities=40%  Similarity=0.624  Sum_probs=8.2

Q ss_pred             hHHHHHhhHH
Q 046695          577 SLEHYRSGYI  586 (604)
Q Consensus       577 slehyR~~y~  586 (604)
                      -|+|||.|-.
T Consensus       475 mLD~yr~~r~  484 (717)
T PF09730_consen  475 MLDYYRQGRQ  484 (717)
T ss_pred             HHHHHHhhhh
Confidence            5899998866

Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus

>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]

Probab=97.09  E-value=0.63  Score=50.63  Aligned_cols=55  Identities=18%  Similarity=0.315  Sum_probs=27.1

Q ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Q 046695          353 QNQLQLAQKDIATWKSKLNSERKEVSKLQERIKSLKTSLSDRDHEVRDLKMAVSD  407 (604)
Q Consensus       353 q~eLe~~q~eie~i~~kLE~e~~ei~~LqeeI~eLk~qlq~leeeI~eLk~~l~d  407 (604)
                      ..++..+..+.+..+..+...+....+.+..+..+..+-+++..++..|-+....
T Consensus       108 ~~El~~~r~e~~~v~~~~~~a~~n~~kAqQ~lar~t~Q~q~lqtrl~~l~~qr~q  162 (499)
T COG4372         108 RSELQKARQEREAVRQELAAARQNLAKAQQELARLTKQAQDLQTRLKTLAEQRRQ  162 (499)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444444444444444555555555555555555555555554444333

>PRK11281 hypothetical protein; Provisional

Probab=97.08  E-value=1.4  Score=54.49  Aligned_cols=20  Identities=10%  Similarity=0.255  Sum_probs=7.8

Q ss_pred             HhhhhcHHHHHHHHHHHhhh
Q 046695          248 EKIHISNEEILRLKIELQKY  267 (604)
Q Consensus       248 ~~~~~~e~ei~~lk~ele~~  267 (604)
                      +++..+..++.....+++.+
T Consensus        87 k~l~~Ap~~l~~a~~~Le~L  106 (1113)
T PRK11281         87 QQLAQAPAKLRQAQAELEAL  106 (1113)
T ss_pred             HHHHHhHHHHHHHHHHHHHh
Confidence            33333333444444444433

>PRK10929 putative mechanosensitive channel protein; Provisional

Probab=97.07  E-value=1.4  Score=54.38  Aligned_cols=48  Identities=13%  Similarity=0.170  Sum_probs=26.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhhh
Q 046695          346 SEKIQTLQNQLQLAQKDIATWKSKLNSERKEVSKLQERIKSLKTSLSD  393 (604)
Q Consensus       346 ~~kieqLq~eLe~~q~eie~i~~kLE~e~~ei~~LqeeI~eLk~qlq~  393 (604)
                      ..++..++.++..+.++.+-++.+.+-...++..++.+++.|.+.+..
T Consensus       186 ~~~~~~l~~~l~s~~~~~~L~~~q~dl~~~~~~~l~~~~~~Lq~~in~  233 (1109)
T PRK10929        186 KALVDELELAQLSANNRQELARLRSELAKKRSQQLDAYLQALRNQLNS  233 (1109)
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345555555555555555555555555555555555555555554443

>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues

Probab=96.99  E-value=0.44  Score=50.70  Aligned_cols=138  Identities=17%  Similarity=0.247  Sum_probs=80.1

Q ss_pred             HHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 046695          421 AEILGLYEEKACLVEQLREWESRGRSLEDELRIIKTQKTELEERIVGEIEQLKASIAERDKHIENLNRSLDSLKAERDRL  500 (604)
Q Consensus       421 ~ei~~LqEk~~sLe~eL~ele~~i~sLe~eIkql~~E~~e~e~~le~eIs~lk~el~e~~~~Le~L~~ek~~Le~el~~L  500 (604)
                      +.+..|+.++..|+.+...+..+...|.......+.+=       +.-|...-..+...-..+-.|..+...-..+...-
T Consensus       160 ~~le~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~EekE-------qqLv~dcv~QL~~An~qia~LseELa~k~Ee~~rQ  232 (306)
T PF04849_consen  160 IQLEALQEKLKSLEEENEQLRSEASQLKTETDTYEEKE-------QQLVLDCVKQLSEANQQIASLSEELARKTEENRRQ  232 (306)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccHHH-------HHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHH
Confidence            44556666666666665544444443333222222211       11122222333333334444444444444455555


Q ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 046695          501 ESDVISRDDRMDQMEKHLQQLHMEHTELIKGAEDAHRMVGELRLKAKELEEEIEKQRVVILEGAE  565 (604)
Q Consensus       501 eqe~~s~r~~I~emE~~L~qLr~E~e~le~~l~elk~kl~ELK~rv~eLeEeve~qk~~i~~~aE  565 (604)
                      -.++.....+|..+...++++-.+.+++...+...+..-..|...+.++.+++..--.+.-+.-|
T Consensus       233 QEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdkY~E~~~mL~EaQE  297 (306)
T PF04849_consen  233 QEEITSLLSQIVDLQQRCKQLAAENEELQQHLQASKESQRQLQAELQELQDKYAECMAMLHEAQE  297 (306)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55666666777777777888888888888888888888888888888888888665555544433

HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].

>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]

Probab=96.98  E-value=0.099  Score=49.68  Aligned_cols=27  Identities=22%  Similarity=0.694  Sum_probs=9.6

Q ss_pred             hHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 046695          489 SLDSLKAERDRLESDVISRDDRMDQME  515 (604)
Q Consensus       489 ek~~Le~el~~Leqe~~s~r~~I~emE  515 (604)
                      +.+.+..+...|.+.+..+.++|.+++
T Consensus        74 EL~~l~sEk~~L~k~lq~~q~kv~eLE  100 (140)
T PF10473_consen   74 ELDTLRSEKENLDKELQKKQEKVSELE  100 (140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333333333333333333333

There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding

>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease

Probab=96.94  E-value=0.52  Score=47.15  Aligned_cols=74  Identities=22%  Similarity=0.355  Sum_probs=38.0

Q ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 046695          419 IKAEILGLYEEKACLVEQLREWESRGRSLEDELRIIKTQK-----TELEERIVGEIEQLKASIAERDKHIENLNRSLDSL  493 (604)
Q Consensus       419 l~~ei~~LqEk~~sLe~eL~ele~~i~sLe~eIkql~~E~-----~e~e~~le~eIs~lk~el~e~~~~Le~L~~ek~~L  493 (604)
                      ++..+.+.++....+...+...+.++..+...++.+..=.     .+-+ .+..++..+...++..+..|..|.++....
T Consensus        73 Lr~~LR~~q~~~r~~~~klk~~~~el~k~~~~l~~L~~L~~dknL~eRe-eL~~kL~~~~~~l~~~~~ki~~Lek~leL~  151 (194)
T PF15619_consen   73 LRERLRKSQEQERELERKLKDKDEELLKTKDELKHLKKLSEDKNLAERE-ELQRKLSQLEQKLQEKEKKIQELEKQLELE  151 (194)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444455555555555555555555555555555544421     1111 455555555555666555555555544333

>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms

Probab=96.93  E-value=0.00021  Score=83.58  Aligned_cols=28  Identities=25%  Similarity=0.483  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 046695          493 LKAERDRLESDVISRDDRMDQMEKHLQQ  520 (604)
Q Consensus       493 Le~el~~Leqe~~s~r~~I~emE~~L~q  520 (604)
                      ...++..|+.++..++..|..++..+.+
T Consensus       620 ~~~e~~~L~~ql~e~~~~i~~lE~~~e~  647 (713)
T PF05622_consen  620 SSPEIQALKKQLQEKDRRIESLEKELEK  647 (713)
T ss_dssp             ----------------------------
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            3334444444444444444444444433

The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.

>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.92  E-value=0.69  Score=48.31  Aligned_cols=42  Identities=21%  Similarity=0.198  Sum_probs=19.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Q 046695          465 IVGEIEQLKASIAERDKHIENLNRSLDSLKAERDRLESDVIS  506 (604)
Q Consensus       465 le~eIs~lk~el~e~~~~Le~L~~ek~~Le~el~~Leqe~~s  506 (604)
                      ++..+.++..-..+++..+..|+.++...+.-+..+..+..+
T Consensus       167 l~~~~e~l~al~~e~e~~~~~L~~qk~e~~~l~~~~aa~~a~  208 (265)
T COG3883         167 LEDKLETLVALQNELETQLNSLNSQKAEKNALIAALAAKEAS  208 (265)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444444444444444444444554444444444444433333

>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]

Probab=96.90  E-value=0.95  Score=49.68  Aligned_cols=78  Identities=26%  Similarity=0.253  Sum_probs=51.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHHH----HHHHHHHHHHHHHHHHHHHHH-HHHhhhhhhhhHHHHHHHHhhhHHHHHhhH
Q 046695          511 MDQMEKHLQQLHMEHTELIKGAED----AHRMVGELRLKAKELEEEIEK-QRVVILEGAEEKREAIRQLCFSLEHYRSGY  585 (604)
Q Consensus       511 I~emE~~L~qLr~E~e~le~~l~e----lk~kl~ELK~rv~eLeEeve~-qk~~i~~~aEeKreAIrQlcfslehyR~~y  585 (604)
                      ...+-.+|+-|+.|.+.+...+..    ...++.+++..-..++++.++ |+..|-++  |+|||   ||--|+--|+..
T Consensus       248 a~~~~~hi~~l~~EveRlrt~l~~Aqk~~~ek~~qy~~Ee~~~reen~rlQrkL~~e~--erRea---lcr~lsEsessl  322 (552)
T KOG2129|consen  248 AAAEKLHIDKLQAEVERLRTYLSRAQKSYQEKLMQYRAEEVDHREENERLQRKLINEL--ERREA---LCRMLSESESSL  322 (552)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH--HHHHH---HHHHhhhhhHHH
Confidence            344555566666666555554433    345666777777777777654 55555544  78998   699999999988


Q ss_pred             HHHHHHHh
Q 046695          586 ISLRKAVI  593 (604)
Q Consensus       586 ~~L~~~~~  593 (604)
                      +.+...|-
T Consensus       323 emdeery~  330 (552)
T KOG2129|consen  323 EMDEERYL  330 (552)
T ss_pred             HHHHHHHH
Confidence            88877653

>KOG2991 consensus Splicing regulator [RNA processing and modification]

Probab=96.80  E-value=0.36  Score=49.91  Aligned_cols=114  Identities=23%  Similarity=0.259  Sum_probs=65.4

Q ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHhhh------------hHHHHHHHHHHhhhHHHH-HHHHHHHHHHHHHHHHHHHHHH
Q 046695          419 IKAEILGLYEEKACLVEQLREWESRGR------------SLEDELRIIKTQKTELEE-RIVGEIEQLKASIAERDKHIEN  485 (604)
Q Consensus       419 l~~ei~~LqEk~~sLe~eL~ele~~i~------------sLe~eIkql~~E~~e~e~-~le~eIs~lk~el~e~~~~Le~  485 (604)
                      ++..|.++-..+..-+.+|.+.+..+.            .|=++-+-+..+..++-- ..++.|.+|..+++..+..=++
T Consensus       175 inl~F~rlK~ele~tk~Klee~QnelsAwkFTPdS~tGK~LMAKCR~L~qENeElG~q~s~Gria~Le~eLAmQKs~seE  254 (330)
T KOG2991|consen  175 INLFFLRLKGELEQTKDKLEEAQNELSAWKFTPDSKTGKMLMAKCRTLQQENEELGHQASEGRIAELEIELAMQKSQSEE  254 (330)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhheeeecCCCcchHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHHhhHHH
Confidence            566777777777777777776666554            222333444444422221 2566777777777776666666


Q ss_pred             HHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 046695          486 LNRSLDSLKAERDRLESDVISRDDRMDQMEKHLQQLHMEHTELIKGA  532 (604)
Q Consensus       486 L~~ek~~Le~el~~Leqe~~s~r~~I~emE~~L~qLr~E~e~le~~l  532 (604)
                      |.+..+.|..-+.+|..+++.+..-|--+-..|..-+.+++.+.+..
T Consensus       255 lkssq~eL~dfm~eLdedVEgmqsTiliLQq~Lketr~~Iq~l~k~~  301 (330)
T KOG2991|consen  255 LKSSQEELYDFMEELDEDVEGMQSTILILQQKLKETRKEIQRLKKGL  301 (330)
T ss_pred             HHHhHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            66666666666666666666555555555555554444444444433

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []

Probab=96.79  E-value=0.93  Score=48.55  Aligned_cols=60  Identities=20%  Similarity=0.366  Sum_probs=30.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 046695          467 GEIEQLKASIAERDKHIENLNRSLDSLKAERDRLESDVISRDDRMDQMEKHLQQLHMEHT  526 (604)
Q Consensus       467 ~eIs~lk~el~e~~~~Le~L~~ek~~Le~el~~Leqe~~s~r~~I~emE~~L~qLr~E~e  526 (604)
                      .++..++.++......|.....+...++.++..+...+......+.++..+|.++.+...
T Consensus       209 ~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~~  268 (325)
T PF08317_consen  209 EELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAEKIRE  268 (325)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345555555555555555555555555555555555555555555555555544444433

>PF13851 GAS: Growth-arrest specific micro-tubule binding

Probab=96.75  E-value=0.65  Score=46.58  Aligned_cols=95  Identities=21%  Similarity=0.332  Sum_probs=53.4

Q ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhchHHHhHHHHHHhHHHHHHHHHHHHHH
Q 046695          360 QKDIATWKSKLNSERKEVSKLQERIKSLKTSLSDRDHEVRDLKMAVSDAEQKIFPEKAQIKAEILGLYEEKACLVEQLRE  439 (604)
Q Consensus       360 q~eie~i~~kLE~e~~ei~~LqeeI~eLk~qlq~leeeI~eLk~~l~d~eekls~eKa~l~~ei~~LqEk~~sLe~eL~e  439 (604)
                      ..+++.++.+.......+..+..+...+..-+..+..++.+|+..+...+..        +..+..+..++..++.++..
T Consensus        33 Keei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~kd--------K~~L~~~k~rl~~~ek~l~~  104 (201)
T PF13851_consen   33 KEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNYEKD--------KQSLQNLKARLKELEKELKD  104 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHH
Confidence            3334444444555555666666677777777777777777777766654322        22334444445555555555


Q ss_pred             HHHhhhhHHHHHHHHHHhhhHHH
Q 046695          440 WESRGRSLEDELRIIKTQKTELE  462 (604)
Q Consensus       440 le~~i~sLe~eIkql~~E~~e~e  462 (604)
                      +.-+.+.|+.++.++..+..++.
T Consensus       105 Lk~e~evL~qr~~kle~ErdeL~  127 (201)
T PF13851_consen  105 LKWEHEVLEQRFEKLEQERDELY  127 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            55555555555555555553333

>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues

Probab=96.73  E-value=0.91  Score=48.36  Aligned_cols=8  Identities=25%  Similarity=-0.006  Sum_probs=4.9

Q ss_pred             CCCCCCCc
Q 046695          132 KSGPRAAG  139 (604)
Q Consensus       132 ~~~~~~~~  139 (604)
                      +-++||++
T Consensus         6 ~y~~r~d~   13 (306)
T PF04849_consen    6 PYKLRADT   13 (306)
T ss_pred             CCCccccc
Confidence            44677764

HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].

>PF13514 AAA_27: AAA domain

Probab=96.70  E-value=2.7  Score=52.10  Aligned_cols=79  Identities=29%  Similarity=0.339  Sum_probs=44.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH--HHHHHHHHHHHHHHHhhhhhhhh---HHHHHHHHhhhHHHHH
Q 046695          508 DDRMDQMEKHLQQLHMEHTELIKGAEDAHRMVGELR--LKAKELEEEIEKQRVVILEGAEE---KREAIRQLCFSLEHYR  582 (604)
Q Consensus       508 r~~I~emE~~L~qLr~E~e~le~~l~elk~kl~ELK--~rv~eLeEeve~qk~~i~~~aEe---KreAIrQlcfslehyR  582 (604)
                      ...+..+...+..+..++..+...+..++..+..+.  ..+..+..+++..+..|-+.+++   -+-|..=|.-+++.||
T Consensus       895 ~~~l~~l~~~l~~l~~~~~~l~~~~~~~~~~l~~l~~~~~~a~l~~e~e~~~a~l~~~~~~~~~~~la~~lL~~a~~~~r  974 (1111)
T PF13514_consen  895 EAELEELEEELEELEEELEELQEERAELEQELEALEGDDDAAELEQEREEAEAELEELAEEWAALRLAAELLEEAIERYR  974 (1111)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333444444444444444444444444444444333  23455666666677777766654   4566677888899999


Q ss_pred             hhHH
Q 046695          583 SGYI  586 (604)
Q Consensus       583 ~~y~  586 (604)
                      ..|+
T Consensus       975 ~~~~  978 (1111)
T PF13514_consen  975 EERQ  978 (1111)
T ss_pred             HHhh
Confidence            9885

>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]

Probab=96.64  E-value=0.5  Score=44.98  Aligned_cols=62  Identities=27%  Similarity=0.332  Sum_probs=26.4

Q ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 046695          491 DSLKAERDRLESDVISRDDRMDQMEKHLQQLHMEHTELIKGAEDAHRMVGELRLKAKELEEE  552 (604)
Q Consensus       491 ~~Le~el~~Leqe~~s~r~~I~emE~~L~qLr~E~e~le~~l~elk~kl~ELK~rv~eLeEe  552 (604)
                      ..-+..+..|..++..+...++.++-.|..++.++..+.+.+...+.+|.+|.....++...
T Consensus        48 En~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE~~~~~~~~~  109 (140)
T PF10473_consen   48 ENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEKVSELESLNSSLENL  109 (140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence            33333344444444444444444444444444444444444444444444444444443333

There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []

Probab=96.62  E-value=1.3  Score=47.40  Aligned_cols=20  Identities=5%  Similarity=0.089  Sum_probs=12.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q 046695          348 KIQTLQNQLQLAQKDIATWK  367 (604)
Q Consensus       348 kieqLq~eLe~~q~eie~i~  367 (604)
                      ..+.|...|...+..+.++.
T Consensus        76 ~c~EL~~~I~egr~~~~~~E   95 (325)
T PF08317_consen   76 SCRELKKYISEGRQIFEEIE   95 (325)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            46666666666665555555

>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed

Probab=96.57  E-value=1.4  Score=47.11  Aligned_cols=20  Identities=30%  Similarity=0.396  Sum_probs=11.0

Q ss_pred             HHHHHHHHHHHhhhhhhhhH
Q 046695          548 ELEEEIEKQRVVILEGAEEK  567 (604)
Q Consensus       548 eLeEeve~qk~~i~~~aEeK  567 (604)
                      .+..+.+.-...|+++++++
T Consensus       262 ~~k~k~e~~n~~l~~m~eer  281 (309)
T PF09728_consen  262 TWKSKWEKSNKALIEMAEER  281 (309)
T ss_pred             HHHHHHHHHhHHHHHHHHHH
Confidence            34444455566666666653

It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].

>TIGR02680 conserved hypothetical protein TIGR02680

Probab=96.56  E-value=3.7  Score=52.06  Aligned_cols=9  Identities=22%  Similarity=0.438  Sum_probs=4.4

Q ss_pred             HHHHHHhcC
Q 046695          587 SLRKAVIGH  595 (604)
Q Consensus       587 ~L~~~~~gh  595 (604)
                      .++..|.+|
T Consensus      1050 ~~~~~l~~~ 1058 (1353)
T TIGR02680      1050 ELRRTLAAL 1058 (1353)
T ss_pred             HHHHhhhcc
Confidence            455555443

Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.

>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT)

Probab=96.54  E-value=0.36  Score=45.10  Aligned_cols=68  Identities=18%  Similarity=0.267  Sum_probs=36.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhchHH
Q 046695          349 IQTLQNQLQLAQKDIATWKSKLNSERKEVSKLQERIKSLKTSLSDRDHEVRDLKMAVSDAEQKIFPEK  416 (604)
Q Consensus       349 ieqLq~eLe~~q~eie~i~~kLE~e~~ei~~LqeeI~eLk~qlq~leeeI~eLk~~l~d~eekls~eK  416 (604)
                      +..++..+..-.......+.+.+.+-..-+..-..|..+++++..+...+..|+.....+...+....
T Consensus        26 ~~~~~~dl~~q~~~a~~Aq~~YE~El~~Ha~~~~~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e   93 (132)
T PF07926_consen   26 LQSLREDLESQAKIAQEAQQKYERELVKHAEDIKELQQLREELQELQQEINELKAEAESAKAELEESE   93 (132)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33334444444444444445555554444444456666666666666667776666666555554433

These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore

>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.50  E-value=2.2  Score=48.51  Aligned_cols=39  Identities=26%  Similarity=0.343  Sum_probs=20.6

Q ss_pred             HHHHHHHHhhhhhhhhHHHHH---HHHhhhHHHHHhhHHHHH
Q 046695          551 EEIEKQRVVILEGAEEKREAI---RQLCFSLEHYRSGYISLR  589 (604)
Q Consensus       551 Eeve~qk~~i~~~aEeKreAI---rQlcfslehyR~~y~~L~  589 (604)
                      .++.+++..+.-+.-+|-+-.   +--.-+|+|-+..|..-+
T Consensus       318 seiqkLkqqL~smErek~~l~anL~dtqt~le~T~~~l~~~~  359 (772)
T KOG0999|consen  318 SEIQKLKQQLMSMEREKAELLANLQDTQTQLEHTEGDLMEQR  359 (772)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhccchhHHHHHH
Confidence            344666666666666665432   222345566655555443

>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily

Probab=96.49  E-value=0.27  Score=55.01  Aligned_cols=14  Identities=7%  Similarity=0.169  Sum_probs=5.6

Q ss_pred             HHHHHHHHHHHHHH
Q 046695          396 HEVRDLKMAVSDAE  409 (604)
Q Consensus       396 eeI~eLk~~l~d~e  409 (604)
                      .++.+++..+..+.
T Consensus       254 ~~l~~l~~~l~~l~  267 (498)
T TIGR03007       254 GRIEALEKQLDALR  267 (498)
T ss_pred             HHHHHHHHHHHHHH
Confidence            33444444444333

Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.

>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]

Probab=96.46  E-value=2.8  Score=49.24  Aligned_cols=23  Identities=22%  Similarity=0.349  Sum_probs=11.3

Q ss_pred             chHHHHHHhhhHHHHHHHHhhhh
Q 046695          188 DQGLQRKVNELETELREAKEKLH  210 (604)
Q Consensus       188 ~~~l~~~~~~le~e~~~~~~k~~  210 (604)
                      +..++..|..|-.-+++...-+.
T Consensus       260 ~~~in~e~~~L~Ssl~e~~~~l~  282 (698)
T KOG0978|consen  260 FSSINREMRHLISSLQEHEKLLK  282 (698)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHH
Confidence            44555555555555544444443

>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]

Probab=96.42  E-value=3.2  Score=49.49  Aligned_cols=16  Identities=25%  Similarity=0.422  Sum_probs=11.6

Q ss_pred             HHHHHHHHHHHHHHHH
Q 046695           69 ELISHVEEFYRMYRSL   84 (604)
Q Consensus        69 ~l~~~v~~~~~~y~~l   84 (604)
                      +||.+|.|-|--|..+
T Consensus       190 pLI~lIqds~~lY~y~  205 (980)
T KOG0980|consen  190 PLIPLIQDSSGLYDYL  205 (980)
T ss_pred             HHHHHHHhhhhHHHHH
Confidence            5888888877776654

>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]

Probab=96.38  E-value=1.2  Score=44.39  Aligned_cols=63  Identities=19%  Similarity=0.308  Sum_probs=42.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 046695          347 EKIQTLQNQLQLAQKDIATWKSKLNSERKEVSKLQERIKSLKTSLSDRDHEVRDLKMAVSDAE  409 (604)
Q Consensus       347 ~kieqLq~eLe~~q~eie~i~~kLE~e~~ei~~LqeeI~eLk~qlq~leeeI~eLk~~l~d~e  409 (604)
                      .+|..++.+++.++.++..+..+|.......-.-...++.+.......++++..+...+.++.
T Consensus        11 rri~~leeele~aqErl~~a~~KL~Eaeq~~dE~er~~Kv~enr~~kdEE~~e~~e~qLkEAk   73 (205)
T KOG1003|consen   11 RRIQLLEEELDRAQERLATALQKLEEAEQAADESERGMKVIENRAQKLEEKMEAQEAQLKEAK   73 (205)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            356667777777777777777777766655555555666777777777777777777666554

>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]

Probab=96.36  E-value=1.3  Score=44.30  Aligned_cols=96  Identities=10%  Similarity=0.186  Sum_probs=43.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHh
Q 046695          310 DNKVKALMEELRITKEKLMLSEAEIASLKQEVESNRSEKIQTLQNQLQLAQKDIATWKSKLNSERKEVSKLQERIKSLKT  389 (604)
Q Consensus       310 ~~kl~~L~eEL~~~~eeL~~se~eI~~Lk~EL~sl~~~kieqLq~eLe~~q~eie~i~~kLE~e~~ei~~LqeeI~eLk~  389 (604)
                      +..+......|..+-..-...+..+..+.+....+ ..+++.+...+..++-.-+....+.+.-...+.-+...+.....
T Consensus        24 qErl~~a~~KL~Eaeq~~dE~er~~Kv~enr~~kd-EE~~e~~e~qLkEAk~iaE~adrK~eEVarkL~iiE~dLE~~ee  102 (205)
T KOG1003|consen   24 QERLATALQKLEEAEQAADESERGMKVIENRAQKL-EEKMEAQEAQLKEAKHIAEKADRKYEEVARKLVIIEGELERAEE  102 (205)
T ss_pred             HHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence            33344444444443333334444444444444444 44566666666666544444444444444444444444444444


Q ss_pred             hhhhHHHHHHHHHHHHH
Q 046695          390 SLSDRDHEVRDLKMAVS  406 (604)
Q Consensus       390 qlq~leeeI~eLk~~l~  406 (604)
                      .....+..+.+|...+.
T Consensus       103 raE~~Es~~~eLeEe~~  119 (205)
T KOG1003|consen  103 RAEAAESQSEELEEDLR  119 (205)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            44444444444444443

>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]

Probab=96.30  E-value=3.2  Score=48.34  Aligned_cols=93  Identities=22%  Similarity=0.209  Sum_probs=46.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 046695          468 EIEQLKASIAERDKHIENLNRSLDSLKAERDRLESDVISRDDRMDQMEKHLQQLHMEHTELIKGAEDAHRMVGELRLKAK  547 (604)
Q Consensus       468 eIs~lk~el~e~~~~Le~L~~ek~~Le~el~~Leqe~~s~r~~I~emE~~L~qLr~E~e~le~~l~elk~kl~ELK~rv~  547 (604)
                      +|..++-.+.......+.+......+..+...+++=|...++..-+++..+.++-.++..-...+..+...+..|...+.
T Consensus       406 q~~Dl~~~~~~~~~~~krl~~~l~~~tk~reqlk~lV~~~~k~~~e~e~s~~~~~~~i~~~k~~~e~le~~~kdL~s~L~  485 (716)
T KOG4593|consen  406 QERDLNRAILGSKDDEKRLAEELPQVTKEREQLKGLVQKVDKHSLEMEASMEELYREITGQKKRLEKLEHELKDLQSQLS  485 (716)
T ss_pred             HHHHHHHHHhhccchHHHHHHHhHHHHHHHHHHHHHHHHHHHhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444444444444444444444444444444444444444444444444444444444444444444445556666666


Q ss_pred             HHHHHHHHHHHhh
Q 046695          548 ELEEEIEKQRVVI  560 (604)
Q Consensus       548 eLeEeve~qk~~i  560 (604)
                      ..+..+..|+..+
T Consensus       486 ~~~q~l~~qr~e~  498 (716)
T KOG4593|consen  486 SREQSLLFQREES  498 (716)
T ss_pred             HHHHHHHHHHHHh
Confidence            6666666666554

>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function

Probab=96.30  E-value=0.77  Score=49.22  Aligned_cols=151  Identities=18%  Similarity=0.223  Sum_probs=70.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhhhHH-HHHHHHHHHHHHHHhhhchHHHhHHHHHHhH
Q 046695          348 KIQTLQNQLQLAQKDIATWKSKLNSERKEVSKLQERIKSLKTSLSDRD-HEVRDLKMAVSDAEQKIFPEKAQIKAEILGL  426 (604)
Q Consensus       348 kieqLq~eLe~~q~eie~i~~kLE~e~~ei~~LqeeI~eLk~qlq~le-eeI~eLk~~l~d~eekls~eKa~l~~ei~~L  426 (604)
                      .+.-|..+|+..+.+.+.|+...+..+.+-..|.....++.-+..... -.+.-.+     ....+...-...+.....|
T Consensus        10 AL~IL~~eLe~cq~ErDqyKlMAEqLqer~q~LKkk~~el~~~~~~~~d~~~~~~~-----~~~~La~lL~~sre~Nk~L   84 (319)
T PF09789_consen   10 ALLILSQELEKCQSERDQYKLMAEQLQERYQALKKKYRELIQEAAGFGDPSIPPEK-----ENKNLAQLLSESREQNKKL   84 (319)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCccCCccc-----chhhHHHHHHHHHHHHHHH
Confidence            355566777777777777775555555443333333333331100000 0000000     0011111111233444555


Q ss_pred             HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhh----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 046695          427 YEEKACLVEQLREWESRGRSLEDELRIIKTQKT----------------ELEERIVGEIEQLKASIAERDKHIENLNRSL  490 (604)
Q Consensus       427 qEk~~sLe~eL~ele~~i~sLe~eIkql~~E~~----------------e~e~~le~eIs~lk~el~e~~~~Le~L~~ek  490 (604)
                      ...+..|++++.+++..+..|..++........                .++ .+..++.+|.-++....++.+++..++
T Consensus        85 ~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~~~~~~~~~~~~ere~lV~qLE-k~~~q~~qLe~d~qs~lDEkeEl~~ER  163 (319)
T PF09789_consen   85 KEEVEELRQKLNEAQGDIKLLREKLARQRVGDEGIGARHFPHEREDLVEQLE-KLREQIEQLERDLQSLLDEKEELVTER  163 (319)
T ss_pred             HHHHHHHHHHHHHHhchHHHHHHHHHhhhhhhccccccccchHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            566666666666666666666655555443332                122 444455555555555555555555555


Q ss_pred             HHHHHHHHHHHHHH
Q 046695          491 DSLKAERDRLESDV  504 (604)
Q Consensus       491 ~~Le~el~~Leqe~  504 (604)
                      +....++..|-.++
T Consensus       164 D~yk~K~~RLN~EL  177 (319)
T PF09789_consen  164 DAYKCKAHRLNHEL  177 (319)
T ss_pred             HHHHHHHHHHHHHH
Confidence            55555555554443

>PF13851 GAS: Growth-arrest specific micro-tubule binding

Probab=96.24  E-value=1.5  Score=44.01  Aligned_cols=147  Identities=19%  Similarity=0.272  Sum_probs=71.1

Q ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH---
Q 046695          419 IKAEILGLYEEKACLVEQLREWESRGRSLEDELRIIKTQKTELEERIVGEIEQLKASIAERDKHIENLNRSLDSLKA---  495 (604)
Q Consensus       419 l~~ei~~LqEk~~sLe~eL~ele~~i~sLe~eIkql~~E~~e~e~~le~eIs~lk~el~e~~~~Le~L~~ek~~Le~---  495 (604)
                      ++.-.....+-+.+|+.++..+.......+..+..+..+.   . .+..-+..+..+..++...|....+.+..+..   
T Consensus        18 YndIT~~NL~lIksLKeei~emkk~e~~~~k~m~ei~~eN---~-~L~epL~~a~~e~~eL~k~L~~y~kdK~~L~~~k~   93 (201)
T PF13851_consen   18 YNDITLNNLELIKSLKEEIAEMKKKEERNEKLMAEISQEN---K-RLSEPLKKAEEEVEELRKQLKNYEKDKQSLQNLKA   93 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H-HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5555556666677777777766666666666666666665   3 45555556666666666666655554443332   


Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHH
Q 046695          496 ERDRLESDVISRDDRMDQMEKHLQQLHMEHTELIKGAEDAHRMVGELRLKAKELEEEIEKQRVVILEGAEEKREAIRQ  573 (604)
Q Consensus       496 el~~Leqe~~s~r~~I~emE~~L~qLr~E~e~le~~l~elk~kl~ELK~rv~eLeEeve~qk~~i~~~aEeKreAIrQ  573 (604)
                      .+..++.++...+-+-..++..+..+..++..+...+..   .+.++. +..++..-+=.+|+..+..+=|+|+|-.+
T Consensus        94 rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~---~i~evq-Qk~~~kn~lLEkKl~~l~~~lE~keaqL~  167 (201)
T PF13851_consen   94 RLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFES---AIQEVQ-QKTGLKNLLLEKKLQALSEQLEKKEAQLN  167 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            222333333333333333333333333333333322221   111111 11223333333455555566666666443

>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure

Probab=96.16  E-value=3.3  Score=47.10  Aligned_cols=23  Identities=30%  Similarity=0.499  Sum_probs=13.7

Q ss_pred             HHHHHHhhhHHHHHHHHhhhhhh
Q 046695          190 GLQRKVNELETELREAKEKLHSQ  212 (604)
Q Consensus       190 ~l~~~~~~le~e~~~~~~k~~~~  212 (604)
                      .++-++.++..|+...+..+..+
T Consensus       113 ~lk~~l~e~~~El~~l~~~l~~l  135 (511)
T PF09787_consen  113 VLKIRLQELDQELRRLRRQLEEL  135 (511)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            55555556666666566655555

They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].

>smart00787 Spc7 Spc7 kinetochore protein

Probab=96.13  E-value=0.21  Score=53.32  Aligned_cols=112  Identities=19%  Similarity=0.282  Sum_probs=53.6

Q ss_pred             hhhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH----HHHHHHHHHHHHHHHHhhhHH
Q 046695          298 GINGLETPSLDLDNKVKALMEELRITKEKLMLSEAEIASLKQEVESNRSEKIQTL----QNQLQLAQKDIATWKSKLNSE  373 (604)
Q Consensus       298 ~I~eLE~el~el~~kl~~L~eEL~~~~eeL~~se~eI~~Lk~EL~sl~~~kieqL----q~eLe~~q~eie~i~~kLE~e  373 (604)
                      -+..|..++..+..+...|...+..++.-+-.+......|+.++..+ ......+    ++++..+++.+......+...
T Consensus       145 Lk~~L~~~~~~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L-~~~~~e~~~~d~~eL~~lk~~l~~~~~ei~~~  223 (312)
T smart00787      145 LKEGLDENLEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQL-KQLEDELEDCDPTELDRAKEKLKKLLQEIMIK  223 (312)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHhCCHHHHHHHHHHHHHHHHHHHHH
Confidence            33445555555555555555555555544445555555555544433 2222222    224444444444444444444


Q ss_pred             HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHh
Q 046695          374 RKEVSKLQERIKSLKTSLSDRDHEVRDLKMAVSDAEQ  410 (604)
Q Consensus       374 ~~ei~~LqeeI~eLk~qlq~leeeI~eLk~~l~d~ee  410 (604)
                      +..+..++.++..++..++....++.++..++..++.
T Consensus       224 ~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~  260 (312)
T smart00787      224 VKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEK  260 (312)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4445555555555555555555555555555554443

This domain is found in cell division proteins which are required for kinetochore-spindle association.

>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function

Probab=96.10  E-value=2.6  Score=45.31  Aligned_cols=94  Identities=20%  Similarity=0.292  Sum_probs=50.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH--------------HHHHHHHHhhhHHHHHHH
Q 046695          313 VKALMEELRITKEKLMLSEAEIASLKQEVESNRSEKIQTLQNQLQLAQ--------------KDIATWKSKLNSERKEVS  378 (604)
Q Consensus       313 l~~L~eEL~~~~eeL~~se~eI~~Lk~EL~sl~~~kieqLq~eLe~~q--------------~eie~i~~kLE~e~~ei~  378 (604)
                      +.+-.+.+.++..+|..+..+-...+..++.+ ..+...++.......              +.-..+..-+...+.+..
T Consensus         4 L~SK~eAL~IL~~eLe~cq~ErDqyKlMAEqL-qer~q~LKkk~~el~~~~~~~~d~~~~~~~~~~~La~lL~~sre~Nk   82 (319)
T PF09789_consen    4 LQSKSEALLILSQELEKCQSERDQYKLMAEQL-QERYQALKKKYRELIQEAAGFGDPSIPPEKENKNLAQLLSESREQNK   82 (319)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhhhhcccCCccCCcccchhhHHHHHHHHHHHHH
Confidence            44556677777788888888887777765555 333333333332221              011122222344445555


Q ss_pred             HHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Q 046695          379 KLQERIKSLKTSLSDRDHEVRDLKMAVSD  407 (604)
Q Consensus       379 ~LqeeI~eLk~qlq~leeeI~eLk~~l~d  407 (604)
                      .|..++..|...+.+++..+.=|.+.+..
T Consensus        83 ~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~  111 (319)
T PF09789_consen   83 KLKEEVEELRQKLNEAQGDIKLLREKLAR  111 (319)
T ss_pred             HHHHHHHHHHHHHHHHhchHHHHHHHHHh
Confidence            55566666666555555555555555554

>PF15254 CCDC14: Coiled-coil domain-containing protein 14

Probab=96.02  E-value=1.6  Score=51.24  Aligned_cols=179  Identities=25%  Similarity=0.203  Sum_probs=111.2

Q ss_pred             HHHHHHHHHHHhhhccccchhhhhhccCChhhhhhhhchHHHHhhhhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 046695          254 NEEILRLKIELQKYNSSETNNYLQADFGSPAEINVNMWDAELQEGINGLETPSLDLDNKVKALMEELRITKEKLMLSEAE  333 (604)
Q Consensus       254 e~ei~~lk~ele~~~~~~~~~~~~~~~~~~~e~~~~~~~~~Lq~~I~eLE~el~el~~kl~~L~eEL~~~~eeL~~se~e  333 (604)
                      +-||.+|=.|||.+-+- +-.. ..--+...||-..|                +-+..+-..|.-.|+++...|++-++-
T Consensus       355 DsE~qRLitEvE~cisl-LPav-~g~tniq~EIALA~----------------QplrsENaqLrRrLrilnqqlreqe~~  416 (861)
T PF15254_consen  355 DSEVQRLITEVEACISL-LPAV-SGSTNIQVEIALAM----------------QPLRSENAQLRRRLRILNQQLREQEKA  416 (861)
T ss_pred             hHHHHHHHHHHHHHHHh-hhhh-hccccchhhhHhhh----------------hhhhhhhHHHHHHHHHHHHHHHHHHhh
Confidence            55788888888887332 1111 11122233333222                223334445556666666666654433


Q ss_pred             H-----HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Q 046695          334 I-----ASLKQEVESNRSEKIQTLQNQLQLAQKDIATWKSKLNSERKEVSKLQERIKSLKTSLSDRDHEVRDLKMAVSDA  408 (604)
Q Consensus       334 I-----~~Lk~EL~sl~~~kieqLq~eLe~~q~eie~i~~kLE~e~~ei~~LqeeI~eLk~qlq~leeeI~eLk~~l~d~  408 (604)
                      -     .....||.+| +.---.||.+|....+-++.++.+.++..+-+..+.++-+.+..-+.+.+.++.+.+      
T Consensus       417 ~k~~~~~~~n~El~sL-qSlN~~Lq~ql~es~k~~e~lq~kneellk~~e~q~~Enk~~~~~~~ekd~~l~~~k------  489 (861)
T PF15254_consen  417 EKTSGSQDCNLELFSL-QSLNMSLQNQLQESLKSQELLQSKNEELLKVIENQKEENKRLRKMFQEKDQELLENK------  489 (861)
T ss_pred             cccCCCcccchhhHHH-HHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH------
Confidence            3     2335577777 555566777777777777777777777766666665666666555555555555544      


Q ss_pred             HhhhchHHHhHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh
Q 046695          409 EQKIFPEKAQIKAEILGLYEEKACLVEQLREWESRGRSLEDELRIIKTQK  458 (604)
Q Consensus       409 eekls~eKa~l~~ei~~LqEk~~sLe~eL~ele~~i~sLe~eIkql~~E~  458 (604)
                       ++|..+.+.+++++....-.+.+++-+|...+.+...|.-.+++..+|+
T Consensus       490 -q~~d~e~~rik~ev~eal~~~k~~q~kLe~sekEN~iL~itlrQrDaEi  538 (861)
T PF15254_consen  490 -QQFDIETTRIKIEVEEALVNVKSLQFKLEASEKENQILGITLRQRDAEI  538 (861)
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhhHhhhHHHHHHHHH
Confidence             4455555667778888888888888888888888888888888888887

>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain

Probab=96.01  E-value=2.7  Score=44.83  Aligned_cols=29  Identities=17%  Similarity=0.292  Sum_probs=12.9

Q ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHHHHhh
Q 046695          430 KACLVEQLREWESRGRSLEDELRIIKTQK  458 (604)
Q Consensus       430 ~~sLe~eL~ele~~i~sLe~eIkql~~E~  458 (604)
                      ++.|...+..+..........+.++..++
T Consensus       137 V~kL~k~i~~Le~e~~~~q~~le~Lr~EK  165 (310)
T PF09755_consen  137 VNKLQKKIERLEKEKSAKQEELERLRREK  165 (310)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence            34444444444444434444444444444

>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]

Probab=96.00  E-value=4.5  Score=47.22  Aligned_cols=77  Identities=9%  Similarity=0.166  Sum_probs=45.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 046695          464 RIVGEIEQLKASIAERDKHIENLNRSLDSLKAERDRLESDVISRDDRMDQMEKHLQQLHMEHTELIKGAEDAHRMVG  540 (604)
Q Consensus       464 ~le~eIs~lk~el~e~~~~Le~L~~ek~~Le~el~~Leqe~~s~r~~I~emE~~L~qLr~E~e~le~~l~elk~kl~  540 (604)
                      .+...+...++....+...+..+.++++.+++-|..+............++...+.......+.++..+..+...+.
T Consensus       409 Dl~~~~~~~~~~~krl~~~l~~~tk~reqlk~lV~~~~k~~~e~e~s~~~~~~~i~~~k~~~e~le~~~kdL~s~L~  485 (716)
T KOG4593|consen  409 DLNRAILGSKDDEKRLAEELPQVTKEREQLKGLVQKVDKHSLEMEASMEELYREITGQKKRLEKLEHELKDLQSQLS  485 (716)
T ss_pred             HHHHHHhhccchHHHHHHHhHHHHHHHHHHHHHHHHHHHhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46666677777777777777777777777777666665555555555555555554444444444444433333333

>TIGR01005 eps_transp_fam exopolysaccharide transport protein family

Probab=95.96  E-value=1.4  Score=52.21  Aligned_cols=34  Identities=9%  Similarity=-0.017  Sum_probs=23.2

Q ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 046695          513 QMEKHLQQLHMEHTELIKGAEDAHRMVGELRLKA  546 (604)
Q Consensus       513 emE~~L~qLr~E~e~le~~l~elk~kl~ELK~rv  546 (604)
                      ..+.++.+|+++.+-..+....+-.+..+.+...
T Consensus       373 ~~~~e~~~L~Re~~~~~~~Y~~ll~r~~e~~~~~  406 (754)
T TIGR01005       373 EQQVDLDALQRDAAAKRQLYESYLTNYRQAASRQ  406 (754)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            4466677778877777777776666666666544

The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.

>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=95.96  E-value=0.29  Score=50.14  Aligned_cols=89  Identities=18%  Similarity=0.248  Sum_probs=70.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 046695          464 RIVGEIEQLKASIAERDKHIENLNRSLDSLKAERDRLESDVISRDDRMDQMEKHLQQLHMEHTELIKGAEDAHRMVGELR  543 (604)
Q Consensus       464 ~le~eIs~lk~el~e~~~~Le~L~~ek~~Le~el~~Leqe~~s~r~~I~emE~~L~qLr~E~e~le~~l~elk~kl~ELK  543 (604)
                      .+..+|...-..++.-...|.++.++++.|..+...+..++......|+.||+-|++.+.++......+..+...+..|+
T Consensus        15 k~k~~i~~e~~~~e~ee~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk   94 (230)
T PF10146_consen   15 KLKNEILQEVESLENEEKCLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLK   94 (230)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44445555555556666677788888888888888888888888888888999999999999888888888888888888


Q ss_pred             HHHHHHHHH
Q 046695          544 LKAKELEEE  552 (604)
Q Consensus       544 ~rv~eLeEe  552 (604)
                      ..++.++.+
T Consensus        95 ~~in~~R~e  103 (230)
T PF10146_consen   95 DEINELRKE  103 (230)
T ss_pred             HHHHHHHHH
Confidence            888888777

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.

>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family

Probab=95.94  E-value=2  Score=46.45  Aligned_cols=12  Identities=8%  Similarity=0.030  Sum_probs=5.0

Q ss_pred             HHHHHHHHHHHH
Q 046695          311 NKVKALMEELRI  322 (604)
Q Consensus       311 ~kl~~L~eEL~~  322 (604)
                      .++..+..++..
T Consensus        81 ~~l~~l~~~~~~   92 (423)
T TIGR01843        81 ADAAELESQVLR   92 (423)
T ss_pred             hHHHHHHHHHHH
Confidence            344444444443

Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.

>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants

Probab=95.93  E-value=3.7  Score=49.05  Aligned_cols=80  Identities=24%  Similarity=0.285  Sum_probs=43.2

Q ss_pred             HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhch---HHHhHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 046695          379 KLQERIKSLKTSLSDRDHEVRDLKMAVSDAEQKIFP---EKAQIKAEILGLYEEKACLVEQLREWESRGRSLEDELRIIK  455 (604)
Q Consensus       379 ~LqeeI~eLk~qlq~leeeI~eLk~~l~d~eekls~---eKa~l~~ei~~LqEk~~sLe~eL~ele~~i~sLe~eIkql~  455 (604)
                      .|+.+|.+++.++.....+...|..++...+.-+..   .+++..++|..+..++.+++++...+.-++..+..++.-..
T Consensus        89 ~le~~l~e~~~~l~~~~~e~~~l~~~l~~~~~~i~~l~~~~~~~e~~~~~l~~~l~~~eken~~Lkye~~~~~keleir~  168 (769)
T PF05911_consen   89 ELEAKLAELSKRLAESAAENSALSKALQEKEKLIAELSEEKSQAEAEIEDLMARLESTEKENSSLKYELHVLSKELEIRN  168 (769)
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            556666666666666666655555555443333322   22234455555555666666665555555555555555544


Q ss_pred             Hhh
Q 046695          456 TQK  458 (604)
Q Consensus       456 ~E~  458 (604)
                      .+.
T Consensus       169 ~E~  171 (769)
T PF05911_consen  169 EER  171 (769)
T ss_pred             HHH
Confidence            444

The function of this family is unknown.

>TIGR01005 eps_transp_fam exopolysaccharide transport protein family

Probab=95.91  E-value=0.37  Score=57.00  Aligned_cols=26  Identities=19%  Similarity=0.240  Sum_probs=12.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhHH
Q 046695          348 KIQTLQNQLQLAQKDIATWKSKLNSE  373 (604)
Q Consensus       348 kieqLq~eLe~~q~eie~i~~kLE~e  373 (604)
                      ++..+..++..++.++...+.++...
T Consensus       238 ~L~~l~~ql~~a~~~~~~a~a~~~~l  263 (754)
T TIGR01005       238 QLAELNTELSRARANRAAAEGTADSV  263 (754)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44455555555544444444443333

The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.

>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.90  E-value=4.3  Score=46.16  Aligned_cols=66  Identities=18%  Similarity=0.226  Sum_probs=30.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhch
Q 046695          349 IQTLQNQLQLAQKDIATWKSKLNSERKEVSKLQERIKSLKTSLSDRDHEVRDLKMAVSDAEQKIFP  414 (604)
Q Consensus       349 ieqLq~eLe~~q~eie~i~~kLE~e~~ei~~LqeeI~eLk~qlq~leeeI~eLk~~l~d~eekls~  414 (604)
                      +..+|..+.....-+-.++.-......-+.+++.+++.+..-+....+++.+++..+..+.+....
T Consensus       347 v~~lq~~l~eke~sl~dlkehassLas~glk~ds~Lk~leIalEqkkEec~kme~qLkkAh~~~dd  412 (654)
T KOG4809|consen  347 VNALQAELTEKESSLIDLKEHASSLASAGLKRDSKLKSLEIALEQKKEECSKMEAQLKKAHNIEDD  412 (654)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHh
Confidence            333333333333333333333333334444445555555555555555555555555555444433

>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily

Probab=95.84  E-value=1.8  Score=48.47  Aligned_cols=62  Identities=21%  Similarity=0.319  Sum_probs=25.3

Q ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH---hHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 046695          473 KASIAERDKHIENLNRSLDSLKAERDRLESDVI---SRDDRMDQMEKHLQQLHMEHTELIKGAED  534 (604)
Q Consensus       473 k~el~e~~~~Le~L~~ek~~Le~el~~Leqe~~---s~r~~I~emE~~L~qLr~E~e~le~~l~e  534 (604)
                      ...+......+..+..+...+...+..++.++.   ....++..+..+....+.-...+...+.+
T Consensus       316 ~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~el~~L~Re~~~~~~~Y~~l~~r~ee  380 (498)
T TIGR03007       316 QIELAEAEAEIASLEARVAELTARIERLESLLRTIPEVEAELTQLNRDYEVNKSNYEQLLTRRES  380 (498)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333444444444444443333333333   22334444444444444444444444433

Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.

>PF13870 DUF4201: Domain of unknown function (DUF4201)

Probab=95.78  E-value=2.1  Score=41.71  Aligned_cols=126  Identities=17%  Similarity=0.207  Sum_probs=62.1

Q ss_pred             HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhchHHHhHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhh
Q 046695          380 LQERIKSLKTSLSDRDHEVRDLKMAVSDAEQKIFPEKAQIKAEILGLYEEKACLVEQLREWESRGRSLEDELRIIKTQKT  459 (604)
Q Consensus       380 LqeeI~eLk~qlq~leeeI~eLk~~l~d~eekls~eKa~l~~ei~~LqEk~~sLe~eL~ele~~i~sLe~eIkql~~E~~  459 (604)
                      |+-+...+..++++...++..|+..+...-+.                  +++++.++.++...+..+..+|......+ 
T Consensus        47 Lkien~~l~~kIeERn~eL~~Lk~~~~~~v~~------------------L~h~keKl~~~~~~~~~l~~~l~~~~~~~-  107 (177)
T PF13870_consen   47 LKIENQQLNEKIEERNKELLKLKKKIGKTVQI------------------LTHVKEKLHFLSEELERLKQELKDREEEL-  107 (177)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence            34445555666666666666665554433332                  34445555554444445555555544444 


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 046695          460 ELEERIVGEIEQLKASIAERDKHIENLNRSLDSLKAERDRLESDVISRDDRMDQMEKHLQQLHMEHTELI  529 (604)
Q Consensus       460 e~e~~le~eIs~lk~el~e~~~~Le~L~~ek~~Le~el~~Leqe~~s~r~~I~emE~~L~qLr~E~e~le  529 (604)
                        . .+..++...+.+...+...+..|..+-..+  ..-.|..||......+..+...+..+++.+..++
T Consensus       108 --~-~~r~~l~~~k~~r~k~~~~~~~l~~~~~~~--~~P~ll~Dy~~~~~~~~~l~~~i~~l~rk~~~l~  172 (177)
T PF13870_consen  108 --A-KLREELYRVKKERDKLRKQNKKLRQQGGLL--GVPALLRDYDKTKEEVEELRKEIKELERKVEILE  172 (177)
T ss_pred             --H-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              3 344444444444444444444433332222  1234445555555666666666555555554443

>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=95.77  E-value=6.8  Score=47.51  Aligned_cols=37  Identities=16%  Similarity=0.100  Sum_probs=25.0

Q ss_pred             HHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh
Q 046695          422 EILGLYEEKACLVEQLREWESRGRSLEDELRIIKTQK  458 (604)
Q Consensus       422 ei~~LqEk~~sLe~eL~ele~~i~sLe~eIkql~~E~  458 (604)
                      --..++.++..++..+.+++.....++..++....+.
T Consensus       760 ~~iea~~~i~~~e~~i~~~~~~~~~lk~a~~~~k~~a  796 (1072)
T KOG0979|consen  760 NNIEAERKIEKLEDNISFLEAREDLLKTALEDKKKEA  796 (1072)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344556666777777777777777777777776666

>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules

Probab=95.77  E-value=2.6  Score=42.68  Aligned_cols=71  Identities=20%  Similarity=0.230  Sum_probs=50.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhchHHHh
Q 046695          348 KIQTLQNQLQLAQKDIATWKSKLNSERKEVSKLQERIKSLKTSLSDRDHEVRDLKMAVSDAEQKIFPEKAQ  418 (604)
Q Consensus       348 kieqLq~eLe~~q~eie~i~~kLE~e~~ei~~LqeeI~eLk~qlq~leeeI~eLk~~l~d~eekls~eKa~  418 (604)
                      .+..+..+.+.+..++.++...+.....+-..+..-|..++..-..+...+.++...|....+.|...++.
T Consensus        70 ~i~~~~~erdq~~~dL~s~E~sfsdl~~ryek~K~vi~~~k~NEE~Lkk~~~ey~~~l~~~eqry~aLK~h  140 (207)
T PF05010_consen   70 EIQKLLKERDQAYADLNSLEKSFSDLHKRYEKQKEVIEGYKKNEETLKKCIEEYEERLKKEEQRYQALKAH  140 (207)
T ss_pred             HHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45566666666777777777777777777777777777777777777777777777777777777666655

The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].

>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT)

Probab=95.64  E-value=1.5  Score=40.86  Aligned_cols=8  Identities=38%  Similarity=0.426  Sum_probs=3.0

Q ss_pred             HHHHHHHH
Q 046695          431 ACLVEQLR  438 (604)
Q Consensus       431 ~sLe~eL~  438 (604)
                      ..++.++.
T Consensus        62 ~~lr~e~~   69 (132)
T PF07926_consen   62 QQLREELQ   69 (132)
T ss_pred             HHHHHHHH
Confidence            33333333

These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore

>PRK10246 exonuclease subunit SbcC; Provisional

Probab=95.63  E-value=8.6  Score=47.63  Aligned_cols=16  Identities=13%  Similarity=0.065  Sum_probs=10.7

Q ss_pred             HHHHHHHHh-cCCCccc
Q 046695          585 YISLRKAVI-GHKGVAV  600 (604)
Q Consensus       585 y~~L~~~~~-gh~~~~~  600 (604)
                      -..||.-|. |.-|||-
T Consensus       493 ~~~Lr~~L~~GePCPVC  509 (1047)
T PRK10246        493 LEAQRAQLQAGQPCPLC  509 (1047)
T ss_pred             HHHHHHhCCCCCCcCCC
Confidence            444777777 7777763

>PRK11281 hypothetical protein; Provisional

Probab=95.57  E-value=9.2  Score=47.62  Aligned_cols=40  Identities=23%  Similarity=0.136  Sum_probs=21.5

Q ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh
Q 046695          419 IKAEILGLYEEKACLVEQLREWESRGRSLEDELRIIKTQK  458 (604)
Q Consensus       419 l~~ei~~LqEk~~sLe~eL~ele~~i~sLe~eIkql~~E~  458 (604)
                      +...+.++..+++.+.++.....+.+..+....+.+++++
T Consensus       290 Ls~~L~~~t~~~~~l~~~~~~~~~~l~~~~q~~~~i~eqi  329 (1113)
T PRK11281        290 LSQRLLKATEKLNTLTQQNLRVKNWLDRLTQSERNIKEQI  329 (1113)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5555555555666666555555555555554444444444

>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []

Probab=95.46  E-value=0.58  Score=43.39  Aligned_cols=71  Identities=23%  Similarity=0.332  Sum_probs=41.4

Q ss_pred             HHhhHHHHHHHHHHHHHHH---HhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046695          486 LNRSLDSLKAERDRLESDV---ISRDDRMDQMEKHLQQLHMEHTELIKGAEDAHRMVGELRLKAKELEEEIEKQ  556 (604)
Q Consensus       486 L~~ek~~Le~el~~Leqe~---~s~r~~I~emE~~L~qLr~E~e~le~~l~elk~kl~ELK~rv~eLeEeve~q  556 (604)
                      |..+++.+.+++..|....   ......+..++.++.+|+..+..+=..+++-...+.||+..|..+++-+..|
T Consensus        42 l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t~LellGEK~E~veEL~~Dv~DlK~myr~Q  115 (120)
T PF12325_consen   42 LEAERDELREEIVKLMEENEELRALKKEVEELEQELEELQQRYQTLLELLGEKSEEVEELRADVQDLKEMYREQ  115 (120)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHH
Confidence            3334444444444444333   2233445566666666666666666667777777777777777777777433

The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].

>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]

Probab=95.39  E-value=11  Score=47.24  Aligned_cols=64  Identities=22%  Similarity=0.330  Sum_probs=35.7

Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 046695          496 ERDRLESDVISRDDRMDQMEKHLQQLHMEHTELIKGAEDAHRMVGELRLKAKELEEEIEKQRVVILEGA  564 (604)
Q Consensus       496 el~~Leqe~~s~r~~I~emE~~L~qLr~E~e~le~~l~elk~kl~ELK~rv~eLeEeve~qk~~i~~~a  564 (604)
                      .+..+...+..+++.++.+-+.|+-.+.....+.+.+     .+..+..++.+++.++......|+..-
T Consensus       972 ~l~~~~e~l~~~~~~~~~~~~~l~~~~~~er~l~dnl-----~~~~l~~q~~e~~re~~~ld~Qi~~~~ 1035 (1294)
T KOG0962|consen  972 QLSESEEHLEERDNEVNEIKQKIRNQYQRERNLKDNL-----TLRNLERKLKELERELSELDKQILEAD 1035 (1294)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence            3344555555555555555555554444433333332     455666777777777777776666554

>KOG4677 consensus Golgi integral membrane protein [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]

Probab=95.32  E-value=6.1  Score=44.02  Aligned_cols=83  Identities=18%  Similarity=0.201  Sum_probs=47.6

Q ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhchHHHhHHHHHHhHHHHHHHHHHHHHH
Q 046695          360 QKDIATWKSKLNSERKEVSKLQERIKSLKTSLSDRDHEVRDLKMAVSDAEQKIFPEKAQIKAEILGLYEEKACLVEQLRE  439 (604)
Q Consensus       360 q~eie~i~~kLE~e~~ei~~LqeeI~eLk~qlq~leeeI~eLk~~l~d~eekls~eKa~l~~ei~~LqEk~~sLe~eL~e  439 (604)
                      +.+.+++...+.=...+++.++.++--|..++++++.++..|..+..+.-..+-+.++...+-+.-+..++.++..+.++
T Consensus       308 ~~E~ee~rve~~~s~ed~~~~q~q~~~Lrs~~~d~EAq~r~l~s~~~~q~~~~h~~ka~~~~~~~~l~~~~ec~~~e~e~  387 (554)
T KOG4677|consen  308 RKEFEETRVELPFSAEDSAHIQDQYTLLRSQIIDIEAQDRHLESAGQTQIFRKHPRKASILNMPLVLTLFYECFYHETEA  387 (554)
T ss_pred             HHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHHhhhHhhhhhhchHHHHHHHHHHHHHHHH
Confidence            34444445445555566666667777777777777777777766666544444444444444445555555555555554


Q ss_pred             HHH
Q 046695          440 WES  442 (604)
Q Consensus       440 le~  442 (604)
                      ...
T Consensus       388 ~~~  390 (554)
T KOG4677|consen  388 EGT  390 (554)
T ss_pred             hhh
Confidence            433

>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed

Probab=95.25  E-value=5.2  Score=42.80  Aligned_cols=48  Identities=23%  Similarity=0.260  Sum_probs=22.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhhhHHH
Q 046695          349 IQTLQNQLQLAQKDIATWKSKLNSERKEVSKLQERIKSLKTSLSDRDH  396 (604)
Q Consensus       349 ieqLq~eLe~~q~eie~i~~kLE~e~~ei~~LqeeI~eLk~qlq~lee  396 (604)
                      ...++.-|..++..++.....-.....+...|.+.++.+-.+..-.+.
T Consensus       109 ~~kFq~~L~dIq~~~ee~~~~~~k~~~eN~~L~eKlK~l~eQye~rE~  156 (309)
T PF09728_consen  109 SEKFQATLKDIQAQMEEQSERNIKLREENEELREKLKSLIEQYELREE  156 (309)
T ss_pred             HHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444444444444444444433333444444555555555555544433

It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].

>smart00787 Spc7 Spc7 kinetochore protein

Probab=95.25  E-value=5.3  Score=42.86  Aligned_cols=128  Identities=24%  Similarity=0.281  Sum_probs=69.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHH----HHHHHHHHHHHHHHhHHHHHHHHHHH
Q 046695          467 GEIEQLKASIAERDKHIENLNRSLDSLKAERDRLESDVISRDDRMDQMEK----HLQQLHMEHTELIKGAEDAHRMVGEL  542 (604)
Q Consensus       467 ~eIs~lk~el~e~~~~Le~L~~ek~~Le~el~~Leqe~~s~r~~I~emE~----~L~qLr~E~e~le~~l~elk~kl~EL  542 (604)
                      ..+..++.+...+...++.++.-...+....+.|..++...+....++++    .+..++.++..+...+.....++.++
T Consensus       151 ~~~~~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~~e~~~~d~~eL~~lk~~l~~~~~ei~~~~~~l~e~  230 (312)
T smart00787      151 ENLEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQLEDELEDCDPTELDRAKEKLKKLLQEIMIKVKKLEEL  230 (312)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444444455555555555555555555555555555555555544    45555555555555555555556666


Q ss_pred             HHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHH--hh-----hHHHHHhhHHHHHHHHhcC
Q 046695          543 RLKAKELEEEIEKQRVVILEGAEEKREAIRQL--CF-----SLEHYRSGYISLRKAVIGH  595 (604)
Q Consensus       543 K~rv~eLeEeve~qk~~i~~~aEeKreAIrQl--cf-----slehyR~~y~~L~~~~~gh  595 (604)
                      +.++.++...|+.-...+.+.-++-++|=+.+  |-     =+.-++.-|+-| +.++|=
T Consensus       231 ~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~~~~r~~t~~Ei~~Lk~~~~~L-e~l~g~  289 (312)
T smart00787      231 EEELQELESKIEDLTNKKSELNTEIAEAEKKLEQCRGFTFKEIEKLKEQLKLL-QSLTGW  289 (312)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH-HHHhCC
Confidence            66666666666555555555555544443332  32     134456666666 666664

This domain is found in cell division proteins which are required for kinetochore-spindle association.

>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules

Probab=95.25  E-value=3.9  Score=41.38  Aligned_cols=133  Identities=19%  Similarity=0.243  Sum_probs=69.8

Q ss_pred             HHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhchHHHhHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHH
Q 046695          382 ERIKSLKTSLSDRDHEVRDLKMAVSDAEQKIFPEKAQIKAEILGLYEEKACLVEQLREWESRGRSLEDELRIIKTQKTEL  461 (604)
Q Consensus       382 eeI~eLk~qlq~leeeI~eLk~~l~d~eekls~eKa~l~~ei~~LqEk~~sLe~eL~ele~~i~sLe~eIkql~~E~~e~  461 (604)
                      ..|..+-+....+-..+..++.+|+++-..|.-    .+..+..+..--..|+..+.       ....++.+...+...+
T Consensus        69 ~~i~~~~~erdq~~~dL~s~E~sfsdl~~ryek----~K~vi~~~k~NEE~Lkk~~~-------ey~~~l~~~eqry~aL  137 (207)
T PF05010_consen   69 AEIQKLLKERDQAYADLNSLEKSFSDLHKRYEK----QKEVIEGYKKNEETLKKCIE-------EYEERLKKEEQRYQAL  137 (207)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHH----HHHHHHHHHHhHHHHHHHHH-------HHHHHHHHHHHHHHHH
Confidence            344444444444445555555555554444422    12222222222223333333       3333333333333333


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 046695          462 EERIVGEIEQLKASIAERDKHIENLNRSLDSLKAERDRLESDVISRDDRMDQMEKHLQQLHMEHTELIKGAEDA  535 (604)
Q Consensus       462 e~~le~eIs~lk~el~e~~~~Le~L~~ek~~Le~el~~Leqe~~s~r~~I~emE~~L~qLr~E~e~le~~l~el  535 (604)
                      ....+..+...+.+|+.+...          ...++..|...+....-.+.+++..|.+...+.++|...-+++
T Consensus       138 K~hAeekL~~ANeei~~v~~~----------~~~e~~aLqa~lkk~e~~~~SLe~~LeQK~kEn~ELtkICDeL  201 (207)
T PF05010_consen  138 KAHAEEKLEKANEEIAQVRSK----------HQAELLALQASLKKEEMKVQSLEESLEQKTKENEELTKICDEL  201 (207)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH----------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            322344555555555553333          5556667777777777888888888888888888888766554

The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].

>PRK10246 exonuclease subunit SbcC; Provisional

Probab=95.19  E-value=12  Score=46.50  Aligned_cols=10  Identities=10%  Similarity=0.235  Sum_probs=5.1

Q ss_pred             hhc-ccCCCCh
Q 046695          220 SMK-GAKNENP  229 (604)
Q Consensus       220 ~~~-~~~~~~~  229 (604)
                      .|| |-+-+||
T Consensus       505 PCPVCGS~~HP  515 (1047)
T PRK10246        505 PCPLCGSTSHP  515 (1047)
T ss_pred             CcCCCCcccCc
Confidence            467 3444554

>PRK10929 putative mechanosensitive channel protein; Provisional

Probab=95.15  E-value=12  Score=46.51  Aligned_cols=47  Identities=17%  Similarity=0.207  Sum_probs=21.2

Q ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 046695          500 LESDVISRDDRMDQMEKHLQQLHMEHTELIKGAEDAHRMVGELRLKAKELEEEI  553 (604)
Q Consensus       500 Leqe~~s~r~~I~emE~~L~qLr~E~e~le~~l~elk~kl~ELK~rv~eLeEev  553 (604)
                      |..-+..+++-++++...++.+=.+.-       +++..-.++...+.++...+
T Consensus       381 l~~ll~~rr~LL~~L~~~~~~~l~~l~-------~L~~~q~QL~~~~~~l~~~L  427 (1109)
T PRK10929        381 LDAQLRTQRELLNSLLSGGDTLILELT-------KLKVANSQLEDALKEVNEAT  427 (1109)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
Confidence            444444555555555555444433333       33333444444444444333

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=95.08  E-value=2.3  Score=50.51  Aligned_cols=67  Identities=16%  Similarity=0.206  Sum_probs=42.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhh
Q 046695          346 SEKIQTLQNQLQLAQKDIATWKSKLNSERKEVSKLQERIKSLKTSLSDRDHEVRDLKMAVSDAEQKI  412 (604)
Q Consensus       346 ~~kieqLq~eLe~~q~eie~i~~kLE~e~~ei~~LqeeI~eLk~qlq~leeeI~eLk~~l~d~eekl  412 (604)
                      +.+...|+.+.+.-..++..++...+..+.....|.++++......+.+..++..+-..+......+
T Consensus       564 ~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~vl~~l~~~~P~L  630 (717)
T PF10168_consen  564 QRRVKLLKQQKEQQLKELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRVDRVLQLLNSQLPVL  630 (717)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC
Confidence            3345555555555555555556556666666677777788888877777777777766665433333

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>TIGR00634 recN DNA repair protein RecN

Probab=95.03  E-value=4.8  Score=46.31  Aligned_cols=6  Identities=17%  Similarity=0.523  Sum_probs=2.2

Q ss_pred             cccccC
Q 046695          140 FDFFLG  145 (604)
Q Consensus       140 ~~~~~~  145 (604)
                      |-++.|
T Consensus        24 ~~vitG   29 (563)
T TIGR00634        24 LTVLTG   29 (563)
T ss_pred             eEEEEC
Confidence            333333

All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.

>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]

Probab=94.95  E-value=3.2  Score=47.87  Aligned_cols=141  Identities=13%  Similarity=0.155  Sum_probs=71.0

Q ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 046695          419 IKAEILGLYEEKACLVEQLREWESRGRSLEDELRIIKTQKTELEERIVGEIEQLKASIAERDKHIENLNRSLDSLKAERD  498 (604)
Q Consensus       419 l~~ei~~LqEk~~sLe~eL~ele~~i~sLe~eIkql~~E~~e~e~~le~eIs~lk~el~e~~~~Le~L~~ek~~Le~el~  498 (604)
                      +.++++.|.=+.+.++++..+.+.+++-.+..|.++..-                        ....+..++...+.++.
T Consensus       179 LmaevSeLKLkltalEkeq~e~E~K~R~se~l~qevn~~------------------------kv~e~~~erlqye~klk  234 (861)
T KOG1899|consen  179 LMAEVSELKLKLTALEKEQNETEKKLRLSENLMQEVNQS------------------------KVGEVVQERLQYETKLK  234 (861)
T ss_pred             HHHHHHHhHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHH------------------------HHHHHHHHHHHHHhhcc
Confidence            555555555566666666655555555444444443311                        12233344555555555


Q ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhhh
Q 046695          499 RLESDVISRDDRMDQMEKHLQQLHMEHTELIK-GAEDAHRMVGELRLKAKELEEEIEKQRVVILEGAEEKREAIRQLCFS  577 (604)
Q Consensus       499 ~Leqe~~s~r~~I~emE~~L~qLr~E~e~le~-~l~elk~kl~ELK~rv~eLeEeve~qk~~i~~~aEeKreAIrQlcfs  577 (604)
                      ....++..+++++.+.++++..+.......-. .-...-...+       -|..-+    ...+-..|+|.--|--|---
T Consensus       235 stk~e~a~L~Eq~~eK~~e~~rl~~~lv~~~~~d~e~~~~rd~-------~lk~a~----eslm~ane~kdr~ie~lr~~  303 (861)
T KOG1899|consen  235 STKGEMAPLREQRSEKNDEEMRLLRTLVQRLMADGEHKSLRDN-------TLKNAL----ESLMRANEQKDRFIESLRNY  303 (861)
T ss_pred             cccchhhhHHHHHhhhhhHHHHHHHHHHHHHhhcccchhhHHH-------HHHHHH----HHHHhhchhhhhHHHHHHHH
Confidence            55556666666666666665555444322111 1100111111       222222    13345677777777766666


Q ss_pred             HHHHHhhHHHHHHHHhcC
Q 046695          578 LEHYRSGYISLRKAVIGH  595 (604)
Q Consensus       578 lehyR~~y~~L~~~~~gh  595 (604)
                      |..|+- .++.+-+++|-
T Consensus       304 ln~y~k-~~~iv~i~qg~  320 (861)
T KOG1899|consen  304 LNNYDK-NAQIVRILQGE  320 (861)
T ss_pred             hhhhhh-hhhhhhhhcCC
Confidence            777765 35566777775

>TIGR03017 EpsF chain length determinant protein EpsF

Probab=94.84  E-value=2.2  Score=47.00  Aligned_cols=11  Identities=18%  Similarity=-0.109  Sum_probs=5.2

Q ss_pred             HHHHHhhHHHH
Q 046695          578 LEHYRSGYISL  588 (604)
Q Consensus       578 lehyR~~y~~L  588 (604)
                      +|-..+.++..
T Consensus       418 ~e~ld~~i~s~  428 (444)
T TIGR03017       418 AELMDRRVRSA  428 (444)
T ss_pred             HHHHhccCCCH
Confidence            45555544433

Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.

>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=94.84  E-value=13  Score=45.23  Aligned_cols=34  Identities=18%  Similarity=0.256  Sum_probs=14.4

Q ss_pred             chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046695          306 SLDLDNKVKALMEELRITKEKLMLSEAEIASLKQ  339 (604)
Q Consensus       306 l~el~~kl~~L~eEL~~~~eeL~~se~eI~~Lk~  339 (604)
                      +...+.++..+.+..+.+...+......|+.|+.
T Consensus       176 ll~~h~eL~~lr~~e~~Le~~~~~~~~~l~~L~~  209 (1072)
T KOG0979|consen  176 LLQYHIELMDLREDEKSLEDKLTTKTEKLNRLED  209 (1072)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence            3333444444444444444444444444444433

>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]

Probab=94.74  E-value=9.9  Score=43.36  Aligned_cols=231  Identities=14%  Similarity=0.223  Sum_probs=120.1

Q ss_pred             cCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH---HHHHHHHHHHHhhhHHHHHHH
Q 046695          302 LETPSLDLDNKVKALMEELRITKEKLMLSEAEIASLKQEVESNRSEKIQTLQNQLQ---LAQKDIATWKSKLNSERKEVS  378 (604)
Q Consensus       302 LE~el~el~~kl~~L~eEL~~~~eeL~~se~eI~~Lk~EL~sl~~~kieqLq~eLe---~~q~eie~i~~kLE~e~~ei~  378 (604)
                      +..++..+.+++......+..  -.|...+.++..++..+.++    -..+..+++   .+.+....+...+.+.+....
T Consensus       253 id~~~~~L~~~l~~~~~~l~~--Leld~aeeel~~I~e~ie~l----Yd~lE~EveA~~~V~~~~~~l~~~l~k~ke~n~  326 (570)
T COG4477         253 IDSRLERLKEQLVENSELLTQ--LELDEAEEELGLIQEKIESL----YDLLEREVEAKNVVEENLPILPDYLEKAKENNE  326 (570)
T ss_pred             HHHHHHHHHHHHHHHHhHHHH--hhhhhHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHH
Confidence            555556666666666666655  56777777777777665554    122222222   122222234444555555555


Q ss_pred             HHHHHHHHHHhhh----------hhHHHHHHHHHHHHHHHHhhhchHHHhHHHHHHhHHHHHHHHHHHHHHHHHhhhhHH
Q 046695          379 KLQERIKSLKTSL----------SDRDHEVRDLKMAVSDAEQKIFPEKAQIKAEILGLYEEKACLVEQLREWESRGRSLE  448 (604)
Q Consensus       379 ~LqeeI~eLk~ql----------q~leeeI~eLk~~l~d~eekls~eKa~l~~ei~~LqEk~~sLe~eL~ele~~i~sLe  448 (604)
                      -|.++|..++...          ...+.++.++...+.....++..    -...++-+++.++.+..-+.       ..+
T Consensus       327 ~L~~Eie~V~~sY~l~e~e~~~vr~~e~eL~el~~~~~~i~~~~~~----~~~~yS~lq~~l~~~~~~l~-------~i~  395 (570)
T COG4477         327 HLKEEIERVKESYRLAETELGSVRKFEKELKELESVLDEILENIEA----QEVAYSELQDNLEEIEKALT-------DIE  395 (570)
T ss_pred             HHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHHHHHhhc----ccccHHHHHHHHHHHHHHHH-------HHh
Confidence            5555555554422          22244444444444444443321    22334444444444444444       444


Q ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH--HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 046695          449 DELRIIKTQKTELEERIVGEIEQLKASIAERDKHIENLNRSL--DSLKAERDRLESDVISRDDRMDQMEKHLQQLHMEHT  526 (604)
Q Consensus       449 ~eIkql~~E~~e~e~~le~eIs~lk~el~e~~~~Le~L~~ek--~~Le~el~~Leqe~~s~r~~I~emE~~L~qLr~E~e  526 (604)
                      ....+....+   . .++++-.+.++.+......|..+.+-.  ..+=+-=.....-+.+....|..+.++|.+.....+
T Consensus       396 ~~q~~~~e~L---~-~LrkdEl~Are~l~~~~~~l~eikR~mek~nLPGlPe~~l~l~~~~~~~i~~l~~eLse~pinm~  471 (570)
T COG4477         396 DEQEKVQEHL---T-SLRKDELEARENLERLKSKLHEIKRYMEKSNLPGLPETFLSLFFTAGHEIQDLMKELSEVPINME  471 (570)
T ss_pred             hhHHHHHHHH---H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHhhhhHHHHHHHHHhhcCCcHH
Confidence            4444444444   2 344444444445555444444443311  111111123344567777888888888888888888


Q ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 046695          527 ELIKGAEDAHRMVGELRLKAKELEEEI  553 (604)
Q Consensus       527 ~le~~l~elk~kl~ELK~rv~eLeEev  553 (604)
                      .+.+....+...++.+.....++-+.+
T Consensus       472 ~v~~~v~~a~~~m~~l~~~t~e~ve~a  498 (570)
T COG4477         472 AVSALVDIATEDMNTLEDETEEVVENA  498 (570)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            888888877777777777666665554

>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]

Probab=94.69  E-value=12  Score=44.16  Aligned_cols=120  Identities=18%  Similarity=0.217  Sum_probs=68.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHH--------------HHHHHHHHHHHH
Q 046695          464 RIVGEIEQLKASIAERDKHIENLNRSLDSLKAERDRLESDVISRDDRMDQMEKH--------------LQQLHMEHTELI  529 (604)
Q Consensus       464 ~le~eIs~lk~el~e~~~~Le~L~~ek~~Le~el~~Leqe~~s~r~~I~emE~~--------------L~qLr~E~e~le  529 (604)
                      .++.+|.++-+++++.+..--.|..+++........|..++..++..|.++...              ++-+......++
T Consensus       465 d~Qeqn~kL~~el~ekdd~nfklm~e~~~~~q~~k~L~~ek~~l~~~i~~l~~~~~~~~~~i~~leeq~~~lt~~~~~l~  544 (698)
T KOG0978|consen  465 DMQEQNQKLLQELREKDDKNFKLMSERIKANQKHKLLREEKSKLEEQILTLKASVDKLELKIGKLEEQERGLTSNESKLI  544 (698)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhH
Confidence            567777777777777777776777777766666666666666666665555544              444444444455


Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHh----hhHHHHHhh
Q 046695          530 KGAEDAHRMVGELRLKAKELEEEIEKQRVVILEGAEEKREAIRQLC----FSLEHYRSG  584 (604)
Q Consensus       530 ~~l~elk~kl~ELK~rv~eLeEeve~qk~~i~~~aEeKreAIrQlc----fslehyR~~  584 (604)
                      +.+......+..++..+.++...++.++... +-.+.+-+=|...|    -+|+|.+--
T Consensus       545 ~el~~~~~~le~~kk~~~e~~~~~~~Lq~~~-ek~~~~le~i~~~~~e~~~ele~~~~k  602 (698)
T KOG0978|consen  545 KELTTLTQSLEMLKKKAQEAKQSLEDLQIEL-EKSEAKLEQIQEQYAELELELEIEKFK  602 (698)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5555555555555555555555555554432 23334444444433    244554433

>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking

Probab=94.60  E-value=5.8  Score=40.88  Aligned_cols=14  Identities=29%  Similarity=0.337  Sum_probs=7.6

Q ss_pred             hhhhHHHHHHHHhh
Q 046695          563 GAEEKREAIRQLCF  576 (604)
Q Consensus       563 ~aEeKreAIrQlcf  576 (604)
                      ++.-++.-|++||.
T Consensus       142 l~~~r~~l~~~l~~  155 (302)
T PF10186_consen  142 LARRRRQLIQELSE  155 (302)
T ss_pred             HHHHHHHHHHHHHH
Confidence            34445555666664

In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy

>PF12795 MscS_porin: Mechanosensitive ion channel porin domain

Probab=94.53  E-value=6.3  Score=40.26  Aligned_cols=55  Identities=18%  Similarity=0.293  Sum_probs=23.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 046695          469 IEQLKASIAERDKHIENLNRSLDSLKAERDRLESDVISRDDRMDQMEKHLQQLHM  523 (604)
Q Consensus       469 Is~lk~el~e~~~~Le~L~~ek~~Le~el~~Leqe~~s~r~~I~emE~~L~qLr~  523 (604)
                      ..-+...+..+...+.......+.+....+.+...+......+..+.+.|+.++.
T Consensus       159 ~~~l~~~~~~le~el~s~~~rq~L~~~qrdl~~~~~~~l~~~l~~Lq~~ln~~R~  213 (240)
T PF12795_consen  159 LAALEAQIEMLEQELLSNNNRQELLQLQRDLLKARIQRLQQQLQALQNLLNQKRR  213 (240)
T ss_pred             HHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333333333333333334444444444444444444444444444444

>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein

Probab=94.48  E-value=8.9  Score=42.83  Aligned_cols=13  Identities=23%  Similarity=0.383  Sum_probs=5.3

Q ss_pred             HHHHHHHHHHHHh
Q 046695          330 SEAEIASLKQEVE  342 (604)
Q Consensus       330 se~eI~~Lk~EL~  342 (604)
                      ...++..++..+.
T Consensus        95 ~~~~~~~~~~~~~  107 (457)
T TIGR01000        95 EENQKQLLEQQLD  107 (457)
T ss_pred             HHHHHHHHHHHHH
Confidence            3444444444333

This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.

>TIGR00634 recN DNA repair protein RecN

Probab=94.47  E-value=11  Score=43.31  Aligned_cols=19  Identities=5%  Similarity=0.115  Sum_probs=7.3

Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q 046695          316 LMEELRITKEKLMLSEAEI  334 (604)
Q Consensus       316 L~eEL~~~~eeL~~se~eI  334 (604)
                      +..+.+.+...++....++
T Consensus       159 ~~~~~~~~~~~~~~~~~~L  177 (563)
T TIGR00634       159 KVKAYRELYQAWLKARQQL  177 (563)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            3333333333333333333

All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.

>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional

Probab=94.46  E-value=8.5  Score=45.55  Aligned_cols=17  Identities=12%  Similarity=0.352  Sum_probs=11.3

Q ss_pred             HhHHHHHHHHHHHHHHH
Q 046695           33 ENLEEMDQSVKRMLKLI   49 (604)
Q Consensus        33 ~~l~~~~~~~~~~l~~i   49 (604)
                      .-+.+++.++..+-.+-
T Consensus       101 kpi~ele~ki~el~~~~  117 (762)
T PLN03229        101 KPLVDLEKKIVDVRKMA  117 (762)
T ss_pred             hHHHHHHHHHHHHHhhh
Confidence            55777888877655543

>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells

Probab=94.40  E-value=7.3  Score=40.37  Aligned_cols=69  Identities=14%  Similarity=0.297  Sum_probs=34.2

Q ss_pred             HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Q 046695          331 EAEIASLKQEVESNRSEKIQTLQNQLQLAQKDIATWKSKLNSERKEVSKLQERIKSLKTSLSDRDHEVRD  400 (604)
Q Consensus       331 e~eI~~Lk~EL~sl~~~kieqLq~eLe~~q~eie~i~~kLE~e~~ei~~LqeeI~eLk~qlq~leeeI~e  400 (604)
                      ...+..+..++.++ ...++.|+.+...+......+....+....+...|...|..+...+..+-..+..
T Consensus        44 ~~~~~~~e~~l~~L-~~d~~~L~~k~~~~~~~~~~l~~~t~~t~~~a~~L~~~i~~l~~~i~~l~~~~~~  112 (264)
T PF06008_consen   44 KQQLDPLEKELESL-EQDVENLQEKATKVSRKAQQLNNNTERTLQRAQDLEQFIQNLQDNIQELIEQVES  112 (264)
T ss_pred             HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333343333333 4455566666666655555555555555555555555555554444444444333

Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex

>PF15397 DUF4618: Domain of unknown function (DUF4618)

Probab=94.39  E-value=7.6  Score=40.61  Aligned_cols=157  Identities=22%  Similarity=0.349  Sum_probs=79.5

Q ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhchHHHhHHHHHHhHHHHHHHH
Q 046695          354 NQLQLAQKDIATWKSKLNSERKEVSKLQERIKSLKTSLSDRDHEVRDLKMAVSDAEQKIFPEKAQIKAEILGLYEEKACL  433 (604)
Q Consensus       354 ~eLe~~q~eie~i~~kLE~e~~ei~~LqeeI~eLk~qlq~leeeI~eLk~~l~d~eekls~eKa~l~~ei~~LqEk~~sL  433 (604)
                      ..+..++.++++|+.+   ....+..|+.++..+++++....++|..|.+=..   ..| +.   ....|.+|...+..+
T Consensus        63 ~~l~~ak~eLqe~eek---~e~~l~~Lq~ql~~l~akI~k~~~el~~L~TYkD---~EY-Pv---K~vqIa~L~rqlq~l  132 (258)
T PF15397_consen   63 KQLQQAKAELQEWEEK---EESKLSKLQQQLEQLDAKIQKTQEELNFLSTYKD---HEY-PV---KAVQIANLVRQLQQL  132 (258)
T ss_pred             HHHHHHHHHHHHHHHH---HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---hhh-hH---HHHHHHHHHHHHHHH
Confidence            4466666666666643   3456677778888888888777777777754111   112 11   223455544444444


Q ss_pred             HHHHH----HHHHhhh----hHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 046695          434 VEQLR----EWESRGR----SLEDELRIIKTQKTELEERIVGEIEQLKASIAERDKHIENLNRSLDSLKAERDRLESDVI  505 (604)
Q Consensus       434 e~eL~----ele~~i~----sLe~eIkql~~E~~e~e~~le~eIs~lk~el~e~~~~Le~L~~ek~~Le~el~~Leqe~~  505 (604)
                      +....    .+..-++    ++..++.....++              ...+.  ...+..+..-.-..--.-..+..++.
T Consensus       133 k~~qqdEldel~e~~~~el~~l~~~~q~k~~~i--------------l~~~~--~k~~~~~~~~l~~~~~~N~~m~kei~  196 (258)
T PF15397_consen  133 KDSQQDELDELNEMRQMELASLSRKIQEKKEEI--------------LSSAA--EKTQSPMQPALLQRTLENQVMQKEIV  196 (258)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHH--HHHHhhchHHHHHHHHHHHHHHHHHH
Confidence            43322    2221111    1111111111111              00000  00001111100001112235667888


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 046695          506 SRDDRMDQMEKHLQQLHMEHTELIKGAEDAH  536 (604)
Q Consensus       506 s~r~~I~emE~~L~qLr~E~e~le~~l~elk  536 (604)
                      ..++.|++++..|..|+.+.+.+.....+.+
T Consensus       197 ~~re~i~el~e~I~~L~~eV~~L~~~~~~~R  227 (258)
T PF15397_consen  197 QFREEIDELEEEIPQLRAEVEQLQAQAQDPR  227 (258)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhcchH
Confidence            8899999999999999999998888765444

>PF13870 DUF4201: Domain of unknown function (DUF4201)

Probab=94.39  E-value=5.4  Score=38.86  Aligned_cols=118  Identities=21%  Similarity=0.268  Sum_probs=62.0

Q ss_pred             HHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 046695          421 AEILGLYEEKACLVEQLREWESRGRSLEDELRIIKTQKTELEERIVGEIEQLKASIAERDKHIENLNRSLDSLKAERDRL  500 (604)
Q Consensus       421 ~ei~~LqEk~~sLe~eL~ele~~i~sLe~eIkql~~E~~e~e~~le~eIs~lk~el~e~~~~Le~L~~ek~~Le~el~~L  500 (604)
                      +.|.+++-.+..+..++.+....+..+.                  ..+......+.+..+.+..+..+...+..++...
T Consensus        42 iDFeqLkien~~l~~kIeERn~eL~~Lk------------------~~~~~~v~~L~h~keKl~~~~~~~~~l~~~l~~~  103 (177)
T PF13870_consen   42 IDFEQLKIENQQLNEKIEERNKELLKLK------------------KKIGKTVQILTHVKEKLHFLSEELERLKQELKDR  103 (177)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5667777777777666665554444333                  3334444444455555555555555555555555


Q ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHHHHH------------hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046695          501 ESDVISRDDRMDQMEKHLQQLHMEHTELIK------------GAEDAHRMVGELRLKAKELEEEIEKQ  556 (604)
Q Consensus       501 eqe~~s~r~~I~emE~~L~qLr~E~e~le~------------~l~elk~kl~ELK~rv~eLeEeve~q  556 (604)
                      ...+...+..+..+..+...++.....+..            ++......+.+++..|..++..++..
T Consensus       104 ~~~~~~~r~~l~~~k~~r~k~~~~~~~l~~~~~~~~~P~ll~Dy~~~~~~~~~l~~~i~~l~rk~~~l  171 (177)
T PF13870_consen  104 EEELAKLREELYRVKKERDKLRKQNKKLRQQGGLLGVPALLRDYDKTKEEVEELRKEIKELERKVEIL  171 (177)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            555555555555555554444444444332            33444455555666666666655443

>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []

Probab=94.39  E-value=1.9  Score=39.99  Aligned_cols=89  Identities=22%  Similarity=0.334  Sum_probs=48.1

Q ss_pred             HHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHH
Q 046695          433 LVEQLREWESRGRSLEDELRIIKTQKTELEERIVGEIEQLKASI---AERDKHIENLNRSLDSLKAERDRLESDVISRDD  509 (604)
Q Consensus       433 Le~eL~ele~~i~sLe~eIkql~~E~~e~e~~le~eIs~lk~el---~e~~~~Le~L~~ek~~Le~el~~Leqe~~s~r~  509 (604)
                      |...++.++.++..+..++..+..+.   . .+..+|..+-...   ......+..|..+...++.+.+.+.+-+.++.+
T Consensus        21 L~s~lr~~E~E~~~l~~el~~l~~~r---~-~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t~LellGEK~E   96 (120)
T PF12325_consen   21 LQSQLRRLEGELASLQEELARLEAER---D-ELREEIVKLMEENEELRALKKEVEELEQELEELQQRYQTLLELLGEKSE   96 (120)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH---H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHH
Confidence            33333444444444444444444444   2 2333333333333   333444555566666677777777777777777


Q ss_pred             HHHHHHHHHHHHHHHH
Q 046695          510 RMDQMEKHLQQLHMEH  525 (604)
Q Consensus       510 ~I~emE~~L~qLr~E~  525 (604)
                      .++++..++.+++.=.
T Consensus        97 ~veEL~~Dv~DlK~my  112 (120)
T PF12325_consen   97 EVEELRADVQDLKEMY  112 (120)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            7777777776666543

The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].

>TIGR03017 EpsF chain length determinant protein EpsF

Probab=94.23  E-value=11  Score=41.64  Aligned_cols=29  Identities=10%  Similarity=0.139  Sum_probs=15.3

Q ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 046695          515 EKHLQQLHMEHTELIKGAEDAHRMVGELR  543 (604)
Q Consensus       515 E~~L~qLr~E~e~le~~l~elk~kl~ELK  543 (604)
                      ..++..|+++.+-.......+-.+..+.+
T Consensus       341 ~~~~~~L~r~~~~~~~~y~~ll~r~~e~~  369 (444)
T TIGR03017       341 RDEMSVLQRDVENAQRAYDAAMQRYTQTR  369 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455566665555555555555554444

Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.

>KOG1937 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.23  E-value=11  Score=42.00  Aligned_cols=24  Identities=25%  Similarity=0.265  Sum_probs=18.5

Q ss_pred             HHHHhhhHHHHHhhHHHHHHHHhc
Q 046695          571 IRQLCFSLEHYRSGYISLRKAVIG  594 (604)
Q Consensus       571 IrQlcfslehyR~~y~~L~~~~~g  594 (604)
                      |-|---|||..+-+|+.+|+.-.|
T Consensus       490 ~k~~l~slEkl~~Dyqairqen~~  513 (521)
T KOG1937|consen  490 QKQYLKSLEKLHQDYQAIRQENDQ  513 (521)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHH
Confidence            445567899999999999887554

>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein

Probab=94.21  E-value=12  Score=41.94  Aligned_cols=28  Identities=11%  Similarity=0.035  Sum_probs=18.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 046695          315 ALMEELRITKEKLMLSEAEIASLKQEVE  342 (604)
Q Consensus       315 ~L~eEL~~~~eeL~~se~eI~~Lk~EL~  342 (604)
                      .+..++..+...+..+..++.+|..++.
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~rL~a~~~  121 (457)
T TIGR01000        94 NEENQKQLLEQQLDNLKDQKKSLDTLKQ  121 (457)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5666666666777777777777766543

This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.

>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein

Probab=94.20  E-value=7  Score=39.44  Aligned_cols=60  Identities=25%  Similarity=0.236  Sum_probs=30.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhh----hhhhhHHHHHH---HHhhhHHHHHhhHHHHHHHH
Q 046695          533 EDAHRMVGELRLKAKELEEEIEKQRVVIL----EGAEEKREAIR---QLCFSLEHYRSGYISLRKAV  592 (604)
Q Consensus       533 ~elk~kl~ELK~rv~eLeEeve~qk~~i~----~~aEeKreAIr---QlcfslehyR~~y~~L~~~~  592 (604)
                      ..+...+..|+..+.....+.+.|....-    --.+||--.||   ||..+-=|+=..++.|.+.|
T Consensus       134 ~~l~~e~erL~aeL~~er~~~e~q~~~Fe~ER~~W~eEKekVi~YQkQLQ~nYvqMy~rn~~LE~~l  200 (202)
T PF06818_consen  134 GSLRREVERLRAELQRERQRREEQRSSFEQERRTWQEEKEKVIRYQKQLQQNYVQMYQRNQALEREL  200 (202)
T ss_pred             hhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            33444445555555544444444433221    24789999996   67765444433444444433

Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane

>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins

Probab=94.03  E-value=16  Score=42.95  Aligned_cols=44  Identities=23%  Similarity=0.385  Sum_probs=31.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 046695          507 RDDRMDQMEKHLQQLHMEHTELIKGAEDAHRMVGELRLKAKELE  550 (604)
Q Consensus       507 ~r~~I~emE~~L~qLr~E~e~le~~l~elk~kl~ELK~rv~eLe  550 (604)
                      .+..+.+|+..|++-++||.+.-.-+..+..+...=|.+-.++.
T Consensus       587 l~E~L~~~E~rLNeARREHtKaVVsLRQ~qrqa~reKer~~E~~  630 (739)
T PF07111_consen  587 LREQLSEMEKRLNEARREHTKAVVSLRQIQRQAAREKERNQELR  630 (739)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHH
Confidence            45677888888888888888877777776666665554444443

The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm

>PRK10869 recombination and repair protein; Provisional

Probab=93.95  E-value=15  Score=42.35  Aligned_cols=10  Identities=30%  Similarity=0.734  Sum_probs=4.1

Q ss_pred             ccccccCCCC
Q 046695          139 GFDFFLGSAG  148 (604)
Q Consensus       139 ~~~~~~~~~~  148 (604)
                      ||-++.|--|
T Consensus        23 glnvitGetG   32 (553)
T PRK10869         23 GMTVITGETG   32 (553)
T ss_pred             CcEEEECCCC
Confidence            3444444333

>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]

Probab=93.95  E-value=14  Score=42.10  Aligned_cols=79  Identities=13%  Similarity=0.265  Sum_probs=33.1

Q ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 046695          475 SIAERDKHIENLNRSLDSLKAERDRLESDVISRDDRMDQMEKHLQQLHMEHTELIKGAEDAHRMVGELRLKAKELEEEI  553 (604)
Q Consensus       475 el~e~~~~Le~L~~ek~~Le~el~~Leqe~~s~r~~I~emE~~L~qLr~E~e~le~~l~elk~kl~ELK~rv~eLeEev  553 (604)
                      +|.+++..+..+..+.+.=....+.|...+.++...+...++.....+....++.+.--+++..+..++.++..+...+
T Consensus       355 eL~el~~~~~~i~~~~~~~~~~yS~lq~~l~~~~~~l~~i~~~q~~~~e~L~~LrkdEl~Are~l~~~~~~l~eikR~m  433 (570)
T COG4477         355 ELKELESVLDEILENIEAQEVAYSELQDNLEEIEKALTDIEDEQEKVQEHLTSLRKDELEARENLERLKSKLHEIKRYM  433 (570)
T ss_pred             HHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333333333332223334444444444444444444444444444444444444444444444444444444

>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]

Probab=93.92  E-value=14  Score=42.00  Aligned_cols=70  Identities=19%  Similarity=0.203  Sum_probs=37.7

Q ss_pred             hhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046695          488 RSLDSLKAERDRLESDVISRDDRMDQMEKHLQQLHMEHTELIKGAEDAHRMVGELRLKAKELEEEIEKQR  557 (604)
Q Consensus       488 ~ek~~Le~el~~Leqe~~s~r~~I~emE~~L~qLr~E~e~le~~l~elk~kl~ELK~rv~eLeEeve~qk  557 (604)
                      .+...|...+..+.+.+.-.+-+.++|..+|......+..+++.+++++++-+|.-..+.+-++++..++
T Consensus       233 Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~da~~ql~aE~~EleDkyAE~m~~~~EaeeELk~lr  302 (596)
T KOG4360|consen  233 EENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAYKDAQRQLTAELEELEDKYAECMQMLHEAEEELKCLR  302 (596)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            3333333333333334444444445555556555666666666666666666666666666666664444

>KOG0243 consensus Kinesin-like protein [Cytoskeleton]

Probab=93.91  E-value=21  Score=43.86  Aligned_cols=18  Identities=39%  Similarity=0.333  Sum_probs=13.0

Q ss_pred             hhhcHHHHHHHHHHHhhh
Q 046695          250 IHISNEEILRLKIELQKY  267 (604)
Q Consensus       250 ~~~~e~ei~~lk~ele~~  267 (604)
                      +...=.||.+||..|---
T Consensus       406 lKd~~~EIerLK~dl~Aa  423 (1041)
T KOG0243|consen  406 LKDLYEEIERLKRDLAAA  423 (1041)
T ss_pred             HHHHHHHHHHHHHHHHHh
Confidence            555667889998887553

>PF12795 MscS_porin: Mechanosensitive ion channel porin domain

Probab=93.82  E-value=8.8  Score=39.22  Aligned_cols=24  Identities=13%  Similarity=0.201  Sum_probs=10.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhh
Q 046695          538 MVGELRLKAKELEEEIEKQRVVIL  561 (604)
Q Consensus       538 kl~ELK~rv~eLeEeve~qk~~i~  561 (604)
                      ++..+...+..|...+-.+|..-+
T Consensus       193 ~~~~l~~~l~~Lq~~ln~~R~~ea  216 (240)
T PF12795_consen  193 RIQRLQQQLQALQNLLNQKRRQEA  216 (240)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444444444444444444333

>PF15066 CAGE1: Cancer-associated gene protein 1 family

Probab=93.62  E-value=15  Score=41.25  Aligned_cols=12  Identities=8%  Similarity=0.027  Sum_probs=5.5

Q ss_pred             cccccCCCCCCC
Q 046695          140 FDFFLGSAGSSA  151 (604)
Q Consensus       140 ~~~~~~~~~~~~  151 (604)
                      .|+.|+.|-..+
T Consensus       194 ~esaLn~~QpqS  205 (527)
T PF15066_consen  194 KESALNPSQPQS  205 (527)
T ss_pred             hhhccCCCCCcc
Confidence            344555444443

>KOG0243 consensus Kinesin-like protein [Cytoskeleton]

Probab=93.57  E-value=24  Score=43.39  Aligned_cols=18  Identities=33%  Similarity=0.495  Sum_probs=10.7

Q ss_pred             HHHHHHhhHHHHHHHHHh
Q 046695          232 LFARIVGYEKKLRLANEK  249 (604)
Q Consensus       232 l~~~~~~~~~el~~~n~~  249 (604)
                      |-.+|..+..+|..|.+|
T Consensus       409 ~~~EIerLK~dl~AaReK  426 (1041)
T KOG0243|consen  409 LYEEIERLKRDLAAAREK  426 (1041)
T ss_pred             HHHHHHHHHHHHHHhHhh
Confidence            335666666666655555

>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=93.36  E-value=2.6  Score=43.36  Aligned_cols=29  Identities=17%  Similarity=0.425  Sum_probs=10.5

Q ss_pred             HHHHHhhHHHHHHHHHHHHHHHHhHHHHH
Q 046695          483 IENLNRSLDSLKAERDRLESDVISRDDRM  511 (604)
Q Consensus       483 Le~L~~ek~~Le~el~~Leqe~~s~r~~I  511 (604)
                      |..+...+..|+..+..++.+...+...|
T Consensus        55 LrqI~~DIn~lE~iIkqa~~er~~~~~~i   83 (230)
T PF10146_consen   55 LRQINQDINTLENIIKQAESERNKRQEKI   83 (230)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333333333333333333333

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.

>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch

Probab=93.28  E-value=6.4  Score=37.28  Aligned_cols=24  Identities=21%  Similarity=0.231  Sum_probs=10.8

Q ss_pred             HHHHHHHHHHHHHHHHhhhhHHHH
Q 046695          427 YEEKACLVEQLREWESRGRSLEDE  450 (604)
Q Consensus       427 qEk~~sLe~eL~ele~~i~sLe~e  450 (604)
                      +...+.+..+++..+.++..|.++
T Consensus       125 ~~~~tq~~~e~rkke~E~~kLk~r  148 (151)
T PF11559_consen  125 QQRKTQYEHELRKKEREIEKLKER  148 (151)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333444444455444444444443

pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.

>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=93.27  E-value=1.1  Score=44.38  Aligned_cols=19  Identities=26%  Similarity=0.427  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHhhhhh
Q 046695           74 VEEFYRMYRSLAERYDHVT   92 (604)
Q Consensus        74 v~~~~~~y~~laeryd~~~   92 (604)
                      ..++|.+|.-|++|-+.+.
T Consensus        19 ~~~li~ay~~L~d~~~~l~   37 (194)
T PF08614_consen   19 FAELIDAYNRLADRTSLLK   37 (194)
T ss_dssp             -------------------
T ss_pred             ccccccccccccccccccc
Confidence            3468889999999887775

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.

>PF13514 AAA_27: AAA domain

Probab=93.19  E-value=29  Score=43.28  Aligned_cols=30  Identities=20%  Similarity=0.217  Sum_probs=13.3

Q ss_pred             hhHHHHHHHHHhhhhcHHHHHHHHHHHhhh
Q 046695          238 GYEKKLRLANEKIHISNEEILRLKIELQKY  267 (604)
Q Consensus       238 ~~~~el~~~n~~~~~~e~ei~~lk~ele~~  267 (604)
                      .+......+..+...++.++..+..+++..
T Consensus       663 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  692 (1111)
T PF13514_consen  663 ALLEEWEQAAARREQLEEELQQLEQELEEA  692 (1111)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333444333334444445555555544443

>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells

Probab=93.15  E-value=12  Score=38.74  Aligned_cols=42  Identities=19%  Similarity=0.291  Sum_probs=18.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHh
Q 046695          348 KIQTLQNQLQLAQKDIATWKSKLNSERKEVSKLQERIKSLKT  389 (604)
Q Consensus       348 kieqLq~eLe~~q~eie~i~~kLE~e~~ei~~LqeeI~eLk~  389 (604)
                      +...+........++-..+...+......|..+-..+..++.
T Consensus        74 ~~~~l~~~t~~t~~~a~~L~~~i~~l~~~i~~l~~~~~~l~~  115 (264)
T PF06008_consen   74 KAQQLNNNTERTLQRAQDLEQFIQNLQDNIQELIEQVESLNE  115 (264)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence            344444444444444444444444444444444444444444

Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex

>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif

Probab=93.05  E-value=20  Score=40.96  Aligned_cols=29  Identities=10%  Similarity=0.288  Sum_probs=14.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 046695          506 SRDDRMDQMEKHLQQLHMEHTELIKGAED  534 (604)
Q Consensus       506 s~r~~I~emE~~L~qLr~E~e~le~~l~e  534 (604)
                      +...+|.-|-+||..|+..+.+....++.
T Consensus       484 NYE~QLs~MSEHLasmNeqL~~Q~eeI~~  512 (518)
T PF10212_consen  484 NYEEQLSMMSEHLASMNEQLAKQREEIQT  512 (518)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33445555555555555555444444433

It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.

>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional

Probab=92.89  E-value=24  Score=41.92  Aligned_cols=15  Identities=27%  Similarity=0.290  Sum_probs=12.2

Q ss_pred             cHHHHHHHHHHHhhh
Q 046695          253 SNEEILRLKIELQKY  267 (604)
Q Consensus       253 ~e~ei~~lk~ele~~  267 (604)
                      ++.++.+||+++-+-
T Consensus       434 Le~elekLk~eilKA  448 (762)
T PLN03229        434 LEGEVEKLKEQILKA  448 (762)
T ss_pred             HHHHHHHHHHHHHhc
Confidence            677888888888877

>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=92.88  E-value=2.1  Score=45.88  Aligned_cols=41  Identities=27%  Similarity=0.409  Sum_probs=17.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHH
Q 046695          468 EIEQLKASIAERDKHIENLNRSLDSLKAERDRLESDVISRD  508 (604)
Q Consensus       468 eIs~lk~el~e~~~~Le~L~~ek~~Le~el~~Leqe~~s~r  508 (604)
                      ++..++.+...+...|..|..+...+..++..++.+.....
T Consensus        51 el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~   91 (314)
T PF04111_consen   51 ELEKLEQEEEELLQELEELEKEREELDQELEELEEELEELD   91 (314)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33334444444444444444444444444444444333333

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.

>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]

Probab=92.85  E-value=13  Score=43.69  Aligned_cols=15  Identities=27%  Similarity=0.317  Sum_probs=5.6

Q ss_pred             HHHHHHHHHHHHHHH
Q 046695          395 DHEVRDLKMAVSDAE  409 (604)
Q Consensus       395 eeeI~eLk~~l~d~e  409 (604)
                      .+.+.-|...++.++
T Consensus       111 eekn~slqerLelaE  125 (916)
T KOG0249|consen  111 EEKNRSLQERLELAE  125 (916)
T ss_pred             HHhhhhhhHHHHHhh
Confidence            333333333333333

>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold)

Probab=92.83  E-value=7.4  Score=35.47  Aligned_cols=57  Identities=9%  Similarity=0.092  Sum_probs=25.8

Q ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 046695          477 AERDKHIENLNRSLDSLKAERDRLESDVISRDDRMDQMEKHLQQLHMEHTELIKGAE  533 (604)
Q Consensus       477 ~e~~~~Le~L~~ek~~Le~el~~Leqe~~s~r~~I~emE~~L~qLr~E~e~le~~l~  533 (604)
                      +.+...+..|..+..+....+.+|...|.+.+..+..+.-+--+|+..+.+.+....
T Consensus        40 d~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le~eK~ak~~l~~r~~k~~~dka   96 (107)
T PF09304_consen   40 DQLRNALQSLQAQNASRNQRIAELQAKIDEARRNLEDEKQAKLELESRLLKAQKDKA   96 (107)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            334444444444555555555555555555554444433222244444444444333

The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.

>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold)

Probab=92.64  E-value=4.9  Score=36.62  Aligned_cols=67  Identities=21%  Similarity=0.369  Sum_probs=43.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhchHH
Q 046695          350 QTLQNQLQLAQKDIATWKSKLNSERKEVSKLQERIKSLKTSLSDRDHEVRDLKMAVSDAEQKIFPEK  416 (604)
Q Consensus       350 eqLq~eLe~~q~eie~i~~kLE~e~~ei~~LqeeI~eLk~qlq~leeeI~eLk~~l~d~eekls~eK  416 (604)
                      ..++..+..++..++.++........+...|...+..|.++...+...+.+|+..|.++...+..+|
T Consensus        12 ~el~n~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le~eK   78 (107)
T PF09304_consen   12 NELQNRLASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRNLEDEK   78 (107)
T ss_dssp             --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444555555555555555666667777788888888888888888888888777775555

The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.

>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein

Probab=92.50  E-value=13  Score=37.54  Aligned_cols=44  Identities=14%  Similarity=0.297  Sum_probs=20.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhh
Q 046695          348 KIQTLQNQLQLAQKDIATWKSKLNSERKEVSKLQERIKSLKTSL  391 (604)
Q Consensus       348 kieqLq~eLe~~q~eie~i~~kLE~e~~ei~~LqeeI~eLk~ql  391 (604)
                      .++.....+......+..+...+..-..++...+.++...+...
T Consensus        39 ql~e~~~~l~~~~~~~~~l~~~~~~K~~ELE~ce~ELqr~~~Ea   82 (202)
T PF06818_consen   39 QLRELRAELRNKESQIQELQDSLRTKQLELEVCENELQRKKNEA   82 (202)
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHhHHHHHHHhCHH
Confidence            34444445555555555444444444444444444444444333

Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=92.42  E-value=13  Score=44.18  Aligned_cols=22  Identities=32%  Similarity=0.480  Sum_probs=8.8

Q ss_pred             HHHHHHHHhhhhhHHHHHHHHH
Q 046695          381 QERIKSLKTSLSDRDHEVRDLK  402 (604)
Q Consensus       381 qeeI~eLk~qlq~leeeI~eLk  402 (604)
                      +.++..++.+.+..-.++.+++
T Consensus       564 ~~rv~~Lk~~~e~Ql~~L~~l~  585 (717)
T PF10168_consen  564 QRRVKLLKQQKEQQLKELQELQ  585 (717)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444444443333333333

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]

Probab=92.42  E-value=21  Score=41.57  Aligned_cols=140  Identities=20%  Similarity=0.238  Sum_probs=81.9

Q ss_pred             HHHhhhhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 046695          294 ELQEGINGLETPSLDLDNKVKALMEELRITKEKLMLSEAEIASLKQEVESNRSEKIQTLQNQLQLAQKDIATWKSKLNSE  373 (604)
Q Consensus       294 ~Lq~~I~eLE~el~el~~kl~~L~eEL~~~~eeL~~se~eI~~Lk~EL~sl~~~kieqLq~eLe~~q~eie~i~~kLE~e  373 (604)
                      ..|+.+.+|+...+.+..++.-|.++..+-.++|+.++-=|....+.|.+    .-+.||+++=..           ...
T Consensus       108 ~yQerLaRLe~dkesL~LQvsvLteqVeaQgEKIrDLE~cie~kr~kLna----tEEmLQqellsr-----------tsL  172 (861)
T KOG1899|consen  108 EYQERLARLEMDKESLQLQVSVLTEQVEAQGEKIRDLETCIEEKRNKLNA----TEEMLQQELLSR-----------TSL  172 (861)
T ss_pred             HHHHHHHHHhcchhhheehHHHHHHHHHHhhhhHHHHHHHHHHHHhhhch----HHHHHHHHHHhh-----------hhH
Confidence            56888889999999999999999988888778888888877766665553    345555554332           111


Q ss_pred             HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhchHHHhHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 046695          374 RKEVSKLQERIKSLKTSLSDRDHEVRDLKMAVSDAEQKIFPEKAQIKAEILGLYEEKACLVEQLREWESRGRSLEDELRI  453 (604)
Q Consensus       374 ~~ei~~LqeeI~eLk~qlq~leeeI~eLk~~l~d~eekls~eKa~l~~ei~~LqEk~~sLe~eL~ele~~i~sLe~eIkq  453 (604)
                      ..+-.+|-.++.+||-.+-.++.+-.+.+..+...+..+....          +.++.-+.++.-..+..+.+...++..
T Consensus       173 ETqKlDLmaevSeLKLkltalEkeq~e~E~K~R~se~l~qevn----------~~kv~e~~~erlqye~klkstk~e~a~  242 (861)
T KOG1899|consen  173 ETQKLDLMAEVSELKLKLTALEKEQNETEKKLRLSENLMQEVN----------QSKVGEVVQERLQYETKLKSTKGEMAP  242 (861)
T ss_pred             HHHHhHHHHHHHHhHHHHHHHHHHhhhHHHHHHhHHHHHHHHH----------HHHHHHHHHHHHHHHhhcccccchhhh
Confidence            1222344455666666666666555555555554443332211          333444444444444444455555555


Q ss_pred             HHHhh
Q 046695          454 IKTQK  458 (604)
Q Consensus       454 l~~E~  458 (604)
                      +.++.
T Consensus       243 L~Eq~  247 (861)
T KOG1899|consen  243 LREQR  247 (861)
T ss_pred             HHHHH
Confidence            44444

>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []

Probab=92.40  E-value=15  Score=38.76  Aligned_cols=104  Identities=25%  Similarity=0.342  Sum_probs=56.1

Q ss_pred             HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhchHHHh---HHHHHHhHHHHHHHHH-------HHHHHHHHhhhh
Q 046695          377 VSKLQERIKSLKTSLSDRDHEVRDLKMAVSDAEQKIFPEKAQ---IKAEILGLYEEKACLV-------EQLREWESRGRS  446 (604)
Q Consensus       377 i~~LqeeI~eLk~qlq~leeeI~eLk~~l~d~eekls~eKa~---l~~ei~~LqEk~~sLe-------~eL~ele~~i~s  446 (604)
                      |.+|..++..|+.+.+-.+=.|.-|+.++....+++..++..   ++-+.+.+.+...+++       .++.-++.++..
T Consensus        20 IqelE~QldkLkKE~qQrQfQleSlEAaLqKQKqK~e~ek~e~s~LkREnq~l~e~c~~lek~rqKlshdlq~Ke~qv~~   99 (307)
T PF10481_consen   20 IQELEQQLDKLKKERQQRQFQLESLEAALQKQKQKVEEEKNEYSALKRENQSLMESCENLEKTRQKLSHDLQVKESQVNF   99 (307)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHhhHHHhhhHHHHHH
Confidence            444445555555555555555555555555555555444444   4444444444444444       445555555556


Q ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046695          447 LEDELRIIKTQKTELEERIVGEIEQLKASIAERDKHIE  484 (604)
Q Consensus       447 Le~eIkql~~E~~e~e~~le~eIs~lk~el~e~~~~Le  484 (604)
                      ++.++...+..+   + .++.+|..++.+++.......
T Consensus       100 lEgQl~s~Kkqi---e-~Leqelkr~KsELErsQ~~~~  133 (307)
T PF10481_consen  100 LEGQLNSCKKQI---E-KLEQELKRCKSELERSQQAAS  133 (307)
T ss_pred             HHHHHHHHHHHH---H-HHHHHHHHHHHHHHHHHHhhc
Confidence            666666666665   4 566666666666665554443

Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].

>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=92.38  E-value=1.9  Score=42.71  Aligned_cols=61  Identities=21%  Similarity=0.221  Sum_probs=26.0

Q ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 046695          493 LKAERDRLESDVISRDDRMDQMEKHLQQLHMEHTELIKGAEDAHRMVGELRLKAKELEEEI  553 (604)
Q Consensus       493 Le~el~~Leqe~~s~r~~I~emE~~L~qLr~E~e~le~~l~elk~kl~ELK~rv~eLeEev  553 (604)
                      +..++..|...+..+...|.+++..+..++.|+..+.-.++.+..++..|+..=..|-+|.
T Consensus       121 l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~Rw  181 (194)
T PF08614_consen  121 LEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELVERW  181 (194)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333334444444444444444444444444444444444444444444444443

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.

>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]

Probab=92.37  E-value=16  Score=38.15  Aligned_cols=8  Identities=38%  Similarity=0.405  Sum_probs=2.9

Q ss_pred             HHHHHHHh
Q 046695          382 ERIKSLKT  389 (604)
Q Consensus       382 eeI~eLk~  389 (604)
                      .+.+.+++
T Consensus        66 t~nqrl~~   73 (333)
T KOG1853|consen   66 TRNQRLTT   73 (333)
T ss_pred             HHHHHHHH
Confidence            33333333

>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]

Probab=92.01  E-value=2.9  Score=46.45  Aligned_cols=21  Identities=33%  Similarity=0.454  Sum_probs=9.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q 046695          346 SEKIQTLQNQLQLAQKDIATW  366 (604)
Q Consensus       346 ~~kieqLq~eLe~~q~eie~i  366 (604)
                      ..++.+++..++..++++...
T Consensus       381 e~k~~q~q~k~~k~~kel~~~  401 (493)
T KOG0804|consen  381 ERKLQQLQTKLKKCQKELKEE  401 (493)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            334444444444444444433

>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]

Probab=91.96  E-value=27  Score=41.29  Aligned_cols=41  Identities=20%  Similarity=0.272  Sum_probs=23.4

Q ss_pred             hHHHHhhhhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHH
Q 046695          292 DAELQEGINGLETPSLDLDNKVKALMEELRITKEKLMLSEA  332 (604)
Q Consensus       292 ~~~Lq~~I~eLE~el~el~~kl~~L~eEL~~~~eeL~~se~  332 (604)
                      +++++..+.+-...+--..++.-.++..|..+..+|.++-.
T Consensus        93 ndklE~~Lankda~lrq~eekn~slqerLelaE~~l~qs~r  133 (916)
T KOG0249|consen   93 NDKLENELANKDADLRQNEEKNRSLQERLELAEPKLQQSLR  133 (916)
T ss_pred             hHHHHHHHhCcchhhchhHHhhhhhhHHHHHhhHhhHhHHh
Confidence            45666666666665555555666666666555555554443

>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans

Probab=91.79  E-value=21  Score=39.63  Aligned_cols=23  Identities=30%  Similarity=0.380  Sum_probs=18.3

Q ss_pred             HHHHhhhhcHHHHHHHHHHHhhh
Q 046695          245 LANEKIHISNEEILRLKIELQKY  267 (604)
Q Consensus       245 ~~n~~~~~~e~ei~~lk~ele~~  267 (604)
                      .+|.-++...+||.+||++|...
T Consensus       266 qlNd~~elHq~Ei~~LKqeLa~~  288 (395)
T PF10267_consen  266 QLNDLTELHQNEIYNLKQELASM  288 (395)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhH
Confidence            45666778889999999999655

Its function is unknown.

>PF15450 DUF4631: Domain of unknown function (DUF4631)

Probab=91.53  E-value=30  Score=39.53  Aligned_cols=105  Identities=15%  Similarity=0.223  Sum_probs=54.0

Q ss_pred             HHHHHhhhhhHHHHHHHHHHHHHHHHhhhchHHHhHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHH
Q 046695          384 IKSLKTSLSDRDHEVRDLKMAVSDAEQKIFPEKAQIKAEILGLYEEKACLVEQLREWESRGRSLEDELRIIKTQKTELEE  463 (604)
Q Consensus       384 I~eLk~qlq~leeeI~eLk~~l~d~eekls~eKa~l~~ei~~LqEk~~sLe~eL~ele~~i~sLe~eIkql~~E~~e~e~  463 (604)
                      +.-+...-+-++..+..+...|.|++..|...+..+......|-.++..+..+   |...++..-+.|.++..+.     
T Consensus       339 ld~LqEksqile~sv~~l~~~lkDLd~~~~aLs~rld~qEqtL~~rL~e~~~e---~~~~~r~~lekl~~~q~e~-----  410 (531)
T PF15450_consen  339 LDLLQEKSQILEDSVAELMRQLKDLDDHILALSWRLDLQEQTLNLRLSEAKNE---WESDERKSLEKLDQWQNEM-----  410 (531)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH-----
Confidence            33344444445555666666666666666555555555555555555555543   3333333444555555544     


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 046695          464 RIVGEIEQLKASIAERDKHIENLNRSLDSLKAERD  498 (604)
Q Consensus       464 ~le~eIs~lk~el~e~~~~Le~L~~ek~~Le~el~  498 (604)
                        ...+..+...++.+-.+|++++..-+.++..++
T Consensus       411 --~~~l~~v~eKVd~LpqqI~~vs~Kc~~~Ksd~d  443 (531)
T PF15450_consen  411 --EKHLKEVQEKVDSLPQQIEEVSDKCDLHKSDSD  443 (531)
T ss_pred             --HHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhh
Confidence              233344444444555555555555555555443

>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif

Probab=91.48  E-value=30  Score=39.53  Aligned_cols=97  Identities=15%  Similarity=0.184  Sum_probs=59.9

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhchHHHhHHHHHHhHHHHH
Q 046695          351 TLQNQLQLAQKDIATWKSKLNSERKEVSKLQERIKSLKTSLSDRDHEVRDLKMAVSDAEQKIFPEKAQIKAEILGLYEEK  430 (604)
Q Consensus       351 qLq~eLe~~q~eie~i~~kLE~e~~ei~~LqeeI~eLk~qlq~leeeI~eLk~~l~d~eekls~eKa~l~~ei~~LqEk~  430 (604)
                      -+..++..+...+..+.+|...-..+-..|..++......++.+.+++..+...+..+++.+.--+..+..++.-+.+-+
T Consensus       417 ~Y~~RI~eLt~qlQ~adSKa~~f~~Ec~aL~~rL~~aE~ek~~l~eeL~~a~~~i~~LqDEL~TTr~NYE~QLs~MSEHL  496 (518)
T PF10212_consen  417 YYMSRIEELTSQLQHADSKAVHFYAECRALQKRLESAEKEKESLEEELKEANQNISRLQDELETTRRNYEEQLSMMSEHL  496 (518)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            34556666666666666666666666666677777776666667777777666666666666554444556666666666


Q ss_pred             HHHHHHHHHHHHhhhhH
Q 046695          431 ACLVEQLREWESRGRSL  447 (604)
Q Consensus       431 ~sLe~eL~ele~~i~sL  447 (604)
                      .++..+|..-..+|+.|
T Consensus       497 asmNeqL~~Q~eeI~~L  513 (518)
T PF10212_consen  497 ASMNEQLAKQREEIQTL  513 (518)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            66666665444444433

It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.

>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]

Probab=91.46  E-value=10  Score=42.95  Aligned_cols=99  Identities=22%  Similarity=0.297  Sum_probs=41.4

Q ss_pred             HHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHH
Q 046695          434 VEQLREWESRGRSLEDELRIIKTQKTELEERIVGEIEQLKASIAERDKHIENLNRSLDSLKAERDRLESDVISRDDRMDQ  513 (604)
Q Consensus       434 e~eL~ele~~i~sLe~eIkql~~E~~e~e~~le~eIs~lk~el~e~~~~Le~L~~ek~~Le~el~~Leqe~~s~r~~I~e  513 (604)
                      .+++++...+..++...|.+...++   . ....+++.|...|.++.+.+..+--+++.+..-+....       ..=.+
T Consensus       204 ~KelrdtN~q~~s~~eel~~kt~el---~-~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~-------da~~q  272 (596)
T KOG4360|consen  204 VKELRDTNTQARSGQEELQSKTKEL---S-RQQEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAYK-------DAQRQ  272 (596)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH---H-HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH-------hhHHH
Confidence            3444444444444444444444443   2 33344455555555544444444444333333222221       12223


Q ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 046695          514 MEKHLQQLHMEHTELIKGAEDAHRMVGELR  543 (604)
Q Consensus       514 mE~~L~qLr~E~e~le~~l~elk~kl~ELK  543 (604)
                      +..++++++....++.+.+++++..+..|+
T Consensus       273 l~aE~~EleDkyAE~m~~~~EaeeELk~lr  302 (596)
T KOG4360|consen  273 LTAELEELEDKYAECMQMLHEAEEELKCLR  302 (596)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            333444444444444444444444444444

>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]

Probab=91.35  E-value=27  Score=38.79  Aligned_cols=24  Identities=21%  Similarity=0.290  Sum_probs=14.8

Q ss_pred             hHHHHHHhhhHHHHHHHHhhhhhh
Q 046695          189 QGLQRKVNELETELREAKEKLHSQ  212 (604)
Q Consensus       189 ~~l~~~~~~le~e~~~~~~k~~~~  212 (604)
                      ..|..||.-|..+..-.+..|+.+
T Consensus        46 e~l~~rv~slsq~Nkvlk~elet~   69 (552)
T KOG2129|consen   46 ESLGARVSSLSQRNKVLKGELETL   69 (552)
T ss_pred             HHHHHHHHHHHhhhhhhhhhHHhh
Confidence            367777777776665555555444

>PF13166 AAA_13: AAA domain

Probab=91.35  E-value=35  Score=40.02  Aligned_cols=19  Identities=21%  Similarity=0.601  Sum_probs=9.3

Q ss_pred             HHHHHHhhhHHHHHHHHhh
Q 046695          190 GLQRKVNELETELREAKEK  208 (604)
Q Consensus       190 ~l~~~~~~le~e~~~~~~k  208 (604)
                      .+..+|.+++.++.....+
T Consensus        93 ~~~~~I~~l~~~l~~~~~~  111 (712)
T PF13166_consen   93 EIEKEIEELKEELKKLEKE  111 (712)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            3445555555555444333

>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins

Probab=91.32  E-value=36  Score=40.15  Aligned_cols=23  Identities=17%  Similarity=0.189  Sum_probs=14.9

Q ss_pred             HHHHHhhhHHHHHhhHHHHHHHH
Q 046695          570 AIRQLCFSLEHYRSGYISLRKAV  592 (604)
Q Consensus       570 AIrQlcfslehyR~~y~~L~~~~  592 (604)
                      |+||+.-..---....++++.+-
T Consensus       611 sLRQ~qrqa~reKer~~E~~~lq  633 (739)
T PF07111_consen  611 SLRQIQRQAAREKERNQELRRLQ  633 (739)
T ss_pred             HHHHHHHHHHHhhchhHHHHHHH
Confidence            57777766666666666666543

The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm

>COG2433 Uncharacterized conserved protein [Function unknown]

Probab=90.92  E-value=4.1  Score=46.91  Aligned_cols=28  Identities=18%  Similarity=0.255  Sum_probs=12.0

Q ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHHhh
Q 046695          431 ACLVEQLREWESRGRSLEDELRIIKTQK  458 (604)
Q Consensus       431 ~sLe~eL~ele~~i~sLe~eIkql~~E~  458 (604)
                      ..+..++..+..+++.++.+++.++..+
T Consensus       418 ~~~~~~i~~~~~~ve~l~~e~~~L~~~~  445 (652)
T COG2433         418 TVYEKRIKKLEETVERLEEENSELKREL  445 (652)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444444444444444444444444

>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]

Probab=90.89  E-value=2.3  Score=43.42  Aligned_cols=73  Identities=22%  Similarity=0.291  Sum_probs=47.1

Q ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 046695          471 QLKASIAERDKHIENLNRSLDSLKAERDRLESDVISRDDRMDQMEKHLQQLHMEHTELIKGAEDAHRMVGELR  543 (604)
Q Consensus       471 ~lk~el~e~~~~Le~L~~ek~~Le~el~~Leqe~~s~r~~I~emE~~L~qLr~E~e~le~~l~elk~kl~ELK  543 (604)
                      .++....+.+..|+.+.+++..+-.++..++.++...+..+++++....+|......+......++++..+|.
T Consensus       132 d~ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe  204 (290)
T COG4026         132 DLKEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELE  204 (290)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhc
Confidence            4455555666667777777777777777777777777777777777777766666655554444444444443

>PF15066 CAGE1: Cancer-associated gene protein 1 family

Probab=90.84  E-value=32  Score=38.73  Aligned_cols=27  Identities=15%  Similarity=0.201  Sum_probs=16.1

Q ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHhH
Q 046695          481 KHIENLNRSLDSLKAERDRLESDVISR  507 (604)
Q Consensus       481 ~~Le~L~~ek~~Le~el~~Leqe~~s~  507 (604)
                      ..|..|.+++...+.++-.|..++..+
T Consensus       478 SALdlLkrEKe~~EqefLslqeEfQk~  504 (527)
T PF15066_consen  478 SALDLLKREKETREQEFLSLQEEFQKH  504 (527)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455666666666666666665555443

>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer

Probab=90.73  E-value=0.45  Score=51.00  Aligned_cols=94  Identities=17%  Similarity=0.297  Sum_probs=31.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 046695          464 RIVGEIEQLKASIAERDKHIENLNRSLDSLKAERDRLESDVISRDDRMDQMEKHLQQLHMEHTELIKGAEDAHRMVGELR  543 (604)
Q Consensus       464 ~le~eIs~lk~el~e~~~~Le~L~~ek~~Le~el~~Leqe~~s~r~~I~emE~~L~qLr~E~e~le~~l~elk~kl~ELK  543 (604)
                      .+..+|..+...+.+....|..|......++..+..+...+..+-..+......|..|+.....+...+.+++-.|+-..
T Consensus        60 dLss~L~~l~~sl~~~~s~L~sLsstV~~lq~Sl~~lsssVs~lS~~ls~h~ssIS~Lqs~v~~lsTdvsNLksdVSt~a  139 (326)
T PF04582_consen   60 DLSSDLQDLASSLADMTSELNSLSSTVTSLQSSLSSLSSSVSSLSSTLSDHSSSISDLQSSVSALSTDVSNLKSDVSTQA  139 (326)
T ss_dssp             ----------------------------------------------------------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhhhhhhhhhhhHHHHHHhhhhhhhhhhhhhhhhhhhc
Confidence            44555566666666677777777777777888888888888888888888889999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHH
Q 046695          544 LKAKELEEEIEKQR  557 (604)
Q Consensus       544 ~rv~eLeEeve~qk  557 (604)
                      ..+.+|+.||..+-
T Consensus       140 L~ItdLe~RV~~LE  153 (326)
T PF04582_consen  140 LNITDLESRVKALE  153 (326)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             chHhhHHHHHHHHh
Confidence            99999999885543

It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.

>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]

Probab=90.62  E-value=24  Score=36.85  Aligned_cols=74  Identities=15%  Similarity=0.245  Sum_probs=39.6

Q ss_pred             HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhchHHHhHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh
Q 046695          378 SKLQERIKSLKTSLSDRDHEVRDLKMAVSDAEQKIFPEKAQIKAEILGLYEEKACLVEQLREWESRGRSLEDELRIIKTQ  457 (604)
Q Consensus       378 ~~LqeeI~eLk~qlq~leeeI~eLk~~l~d~eekls~eKa~l~~ei~~LqEk~~sLe~eL~ele~~i~sLe~eIkql~~E  457 (604)
                      +.|..++..++++..+++.+..-|+..+....+++..       ...+.-..+..|+.++......+..+...|+.+++.
T Consensus        48 aelesqL~q~etrnrdl~t~nqrl~~E~e~~Kek~e~-------q~~q~y~q~s~Leddlsqt~aikeql~kyiReLEQa  120 (333)
T KOG1853|consen   48 AELESQLDQLETRNRDLETRNQRLTTEQERNKEKQED-------QRVQFYQQESQLEDDLSQTHAIKEQLRKYIRELEQA  120 (333)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3455666666666666666666666665555444432       222222234455555555555555555555555555


Q ss_pred             h
Q 046695          458 K  458 (604)
Q Consensus       458 ~  458 (604)
                      .
T Consensus       121 N  121 (333)
T KOG1853|consen  121 N  121 (333)
T ss_pred             c
Confidence            4

>COG2433 Uncharacterized conserved protein [Function unknown]

Probab=90.52  E-value=3.4  Score=47.54  Aligned_cols=73  Identities=22%  Similarity=0.269  Sum_probs=43.5

Q ss_pred             HHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhchHHHhHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 046695          382 ERIKSLKTSLSDRDHEVRDLKMAVSDAEQKIFPEKAQIKAEILGLYEEKACLVEQLREWESRGRSLEDELRIIK  455 (604)
Q Consensus       382 eeI~eLk~qlq~leeeI~eLk~~l~d~eekls~eKa~l~~ei~~LqEk~~sLe~eL~ele~~i~sLe~eIkql~  455 (604)
                      .++..|+..+..++.+|..|+..+..+..... .+...+-++..+.+++..|+.+|.+....+..|+.++.++.
T Consensus       436 ~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~-~~~~~~rei~~~~~~I~~L~~~L~e~~~~ve~L~~~l~~l~  508 (652)
T COG2433         436 EENSELKRELEELKREIEKLESELERFRREVR-DKVRKDREIRARDRRIERLEKELEEKKKRVEELERKLAELR  508 (652)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333333444444444444333332 12235667777888888888888888888888887777766

>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription

Probab=90.37  E-value=21  Score=35.77  Aligned_cols=41  Identities=15%  Similarity=0.301  Sum_probs=18.0

Q ss_pred             HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 046695          328 MLSEAEIASLKQEVESNRSEKIQTLQNQLQLAQKDIATWKSK  369 (604)
Q Consensus       328 ~~se~eI~~Lk~EL~sl~~~kieqLq~eLe~~q~eie~i~~k  369 (604)
                      +..+..+..++..+... -.....++.++..+...+..|..+
T Consensus        33 rd~e~~l~~a~~~~a~~-~a~~~~le~~~~~~~~~~~~~~~~   73 (221)
T PF04012_consen   33 RDMEEQLRKARQALARV-MANQKRLERKLDEAEEEAEKWEKQ   73 (221)
T ss_pred             HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333333333 333444555555555555555433

The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].

>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA

Probab=90.15  E-value=5.9  Score=42.37  Aligned_cols=85  Identities=28%  Similarity=0.352  Sum_probs=47.4

Q ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 046695          473 KASIAERDKHIENLNRSLDSLKAERDRLESDVISRDDRMDQMEKHLQQLHMEHTELIKGAEDAHRMVGELRLKAKELEEE  552 (604)
Q Consensus       473 k~el~e~~~~Le~L~~ek~~Le~el~~Leqe~~s~r~~I~emE~~L~qLr~E~e~le~~l~elk~kl~ELK~rv~eLeEe  552 (604)
                      +..+.++++.+....-.-..|.++...|.-++..+...+.+++..+.++++++.+-...+...+.....|+..+..|.+.
T Consensus        83 k~~l~evEekyrkAMv~naQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~Lre~  162 (302)
T PF09738_consen   83 KDSLAEVEEKYRKAMVSNAQLDNEKSALMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELDELREQ  162 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333333333334455555555566666666666666666666666555555666666666666666666666


Q ss_pred             HHHHH
Q 046695          553 IEKQR  557 (604)
Q Consensus       553 ve~qk  557 (604)
                      |....
T Consensus       163 L~~rd  167 (302)
T PF09738_consen  163 LKQRD  167 (302)
T ss_pred             HHHHH
Confidence            64433

They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.

>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins

Probab=90.08  E-value=20  Score=35.00  Aligned_cols=137  Identities=18%  Similarity=0.173  Sum_probs=82.3

Q ss_pred             hhhchHHHhHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 046695          410 QKIFPEKAQIKAEILGLYEEKACLVEQLREWESRGRSLEDELRIIKTQKTELEERIVGEIEQLKASIAERDKHIENLNRS  489 (604)
Q Consensus       410 ekls~eKa~l~~ei~~LqEk~~sLe~eL~ele~~i~sLe~eIkql~~E~~e~e~~le~eIs~lk~el~e~~~~Le~L~~e  489 (604)
                      ++++..-...+.+...+..++.-++.++...=.....|+..-+....++++.+          +..-.-.+.++...|.+
T Consensus        16 ~qIf~I~E~~R~E~~~l~~EL~evk~~v~~~I~evD~Le~~er~aR~rL~eVS----------~~f~~ysE~dik~AYe~   85 (159)
T PF05384_consen   16 EQIFEIAEQARQEYERLRKELEEVKEEVSEVIEEVDKLEKRERQARQRLAEVS----------RNFDRYSEEDIKEAYEE   85 (159)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------hhhcccCHHHHHHHHHH
Confidence            33444343444444444444444444444444444444444444444442222          11111224456666777


Q ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046695          490 LDSLKAERDRLESDVISRDDRMDQMEKHLQQLHMEHTELIKGAEDAHRMVGELRLKAKELEEEIEKQ  556 (604)
Q Consensus       490 k~~Le~el~~Leqe~~s~r~~I~emE~~L~qLr~E~e~le~~l~elk~kl~ELK~rv~eLeEeve~q  556 (604)
                      ...+.-.+..+.++-..++..-.+++..|..+..=.+..+.....+...++=|...+..+...++..
T Consensus        86 A~~lQ~~L~~~re~E~qLr~rRD~LErrl~~l~~tierAE~l~sqi~vvl~yL~~dl~~v~~~~e~~  152 (159)
T PF05384_consen   86 AHELQVRLAMLREREKQLRERRDELERRLRNLEETIERAENLVSQIGVVLNYLSGDLQQVSEQIEDA  152 (159)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            7777777777777777777788888888888888777777777777777777777777777766543

The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction

>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []

Probab=90.05  E-value=21  Score=37.01  Aligned_cols=18  Identities=28%  Similarity=0.377  Sum_probs=11.0

Q ss_pred             HHHHhhHHHHHHHHhcCC
Q 046695          579 EHYRSGYISLRKAVIGHK  596 (604)
Q Consensus       579 ehyR~~y~~L~~~~~gh~  596 (604)
                      -+=|+-|+.||++=+|.+
T Consensus       219 ~~g~~ky~tl~~i~~g~t  236 (246)
T PF00769_consen  219 RAGRDKYKTLRQIRQGNT  236 (246)
T ss_dssp             HTT--HHHHHHHHT-S-H
T ss_pred             HhchhHHHHHHHHhcCCH
Confidence            345777999999999973

Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.

>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89

Probab=89.56  E-value=4.5  Score=34.00  Aligned_cols=66  Identities=23%  Similarity=0.219  Sum_probs=53.0

Q ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046695          492 SLKAERDRLESDVISRDDRMDQMEKHLQQLHMEHTELIKGAEDAHRMVGELRLKAKELEEEIEKQR  557 (604)
Q Consensus       492 ~Le~el~~Leqe~~s~r~~I~emE~~L~qLr~E~e~le~~l~elk~kl~ELK~rv~eLeEeve~qk  557 (604)
                      .|+..+..|...+.....++...+..++.|+.++......++.+.....+|+..+..|.++++..+
T Consensus         2 ~Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~~r   67 (69)
T PF14197_consen    2 KLEAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEELR   67 (69)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            356666677777777777777788888888999999999999999999999999999988865543

>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions []

Probab=89.16  E-value=11  Score=33.55  Aligned_cols=84  Identities=17%  Similarity=0.236  Sum_probs=52.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 046695          468 EIEQLKASIAERDKHIENLNRSLDSLKAERDRLESDVISRDDRMDQMEKHLQQLHMEHTELIKGAEDAHRMVGELRLKAK  547 (604)
Q Consensus       468 eIs~lk~el~e~~~~Le~L~~ek~~Le~el~~Leqe~~s~r~~I~emE~~L~qLr~E~e~le~~l~elk~kl~ELK~rv~  547 (604)
                      ....+...+......+..+...+..+..++....+.|......+..+..+++-|+....+-...+..+...-..+..++.
T Consensus        11 a~~~~~~~~~~k~~~~~~lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e~k~L~~~~~Ks~~~i~~L~~~E~~~~~~l~   90 (96)
T PF08647_consen   11 AFKELSEQADKKVKELTILEQKKLRLEAEKAKADQKYFAAMRSKDALDNEMKKLNTQLSKSSELIEQLKETEKEFVRKLK   90 (96)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence            33333444444444555555566666667777777777777777777777777777666666555555555555666666


Q ss_pred             HHHH
Q 046695          548 ELEE  551 (604)
Q Consensus       548 eLeE  551 (604)
                      +++.
T Consensus        91 ~~Ek   94 (96)
T PF08647_consen   91 NLEK   94 (96)
T ss_pred             Hhhc
Confidence            5554

>PRK10869 recombination and repair protein; Provisional

Probab=89.08  E-value=49  Score=38.21  Aligned_cols=32  Identities=13%  Similarity=0.122  Sum_probs=12.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 046695          467 GEIEQLKASIAERDKHIENLNRSLDSLKAERD  498 (604)
Q Consensus       467 ~eIs~lk~el~e~~~~Le~L~~ek~~Le~el~  498 (604)
                      .++..+..=.+..+.-++++...++.+..++.
T Consensus       303 ~Rl~~l~~L~rKyg~~~~~~~~~~~~l~~eL~  334 (553)
T PRK10869        303 QRLSKQISLARKHHVSPEELPQHHQQLLEEQQ  334 (553)
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence            33333333333333344444444444444443

>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms

Probab=89.03  E-value=16  Score=40.10  Aligned_cols=18  Identities=17%  Similarity=0.224  Sum_probs=9.1

Q ss_pred             cHHHHHHHHHHHhhhccc
Q 046695          253 SNEEILRLKIELQKYNSS  270 (604)
Q Consensus       253 ~e~ei~~lk~ele~~~~~  270 (604)
                      +....+--|.|+|.|.|.
T Consensus       189 s~vd~~eWklEvERV~Pq  206 (359)
T PF10498_consen  189 SKVDPAEWKLEVERVLPQ  206 (359)
T ss_pred             ccCCHHHHHHHHHHHhhh
Confidence            333445556666666433

Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.

>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]

Probab=88.91  E-value=50  Score=38.02  Aligned_cols=32  Identities=19%  Similarity=0.131  Sum_probs=20.1

Q ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHH
Q 046695          419 IKAEILGLYEEKACLVEQLREWESRGRSLEDE  450 (604)
Q Consensus       419 l~~ei~~LqEk~~sLe~eL~ele~~i~sLe~e  450 (604)
                      ..++.-++.+-....+++......++-+++..
T Consensus       440 aqaevdrlLeilkeveneKnDkdkkiaeler~  471 (654)
T KOG4809|consen  440 AQAEVDRLLEILKEVENEKNDKDKKIAELERH  471 (654)
T ss_pred             HHHHHHHHHHHHHHHHhhhccccchhhhcCch
Confidence            45566666666666666666666666666633

>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]

Probab=88.86  E-value=30  Score=35.49  Aligned_cols=47  Identities=19%  Similarity=0.267  Sum_probs=28.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 046695          322 ITKEKLMLSEAEIASLKQEVESNRSEKIQTLQNQLQLAQKDIATWKSK  369 (604)
Q Consensus       322 ~~~eeL~~se~eI~~Lk~EL~sl~~~kieqLq~eLe~~q~eie~i~~k  369 (604)
                      .+..-|+..+..+..+...+..+ -...+.++.++..++.+.+.|..+
T Consensus        28 ~l~Q~ird~~~~l~~ar~~~A~~-~a~~k~~e~~~~~~~~~~~k~e~~   74 (225)
T COG1842          28 MLEQAIRDMESELAKARQALAQA-IARQKQLERKLEEAQARAEKLEEK   74 (225)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444555555555555555555 456777777777777777777644

>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]

Probab=88.70  E-value=45  Score=37.29  Aligned_cols=24  Identities=29%  Similarity=0.131  Sum_probs=13.2

Q ss_pred             HHHHHhhhHHHHHh--hHHHHHHHHh
Q 046695          570 AIRQLCFSLEHYRS--GYISLRKAVI  593 (604)
Q Consensus       570 AIrQlcfslehyR~--~y~~L~~~~~  593 (604)
                      |.--+-|||-|==+  --.+|-|||+
T Consensus       446 a~~~~~~Slaaeid~~sqdeLmqafq  471 (502)
T KOG0982|consen  446 ATFSLFFSLAAEIDEMSQDELMQAFQ  471 (502)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence            33445566666444  3445666665

>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms

Probab=88.60  E-value=15  Score=40.28  Aligned_cols=22  Identities=14%  Similarity=0.380  Sum_probs=13.6

Q ss_pred             ChhhhhhhhchHHHHhhhhccC
Q 046695          282 SPAEINVNMWDAELQEGINGLE  303 (604)
Q Consensus       282 ~~~e~~~~~~~~~Lq~~I~eLE  303 (604)
                      ++..|+.+-|-++++-+.-.|+
T Consensus       187 ~es~vd~~eWklEvERV~PqLK  208 (359)
T PF10498_consen  187 IESKVDPAEWKLEVERVLPQLK  208 (359)
T ss_pred             ccccCCHHHHHHHHHHHhhhhe
Confidence            4455566667777776665554

Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.

>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch

Probab=88.55  E-value=22  Score=33.58  Aligned_cols=8  Identities=13%  Similarity=0.173  Sum_probs=3.4

Q ss_pred             HHHHHHhh
Q 046695          259 RLKIELQK  266 (604)
Q Consensus       259 ~lk~ele~  266 (604)
                      -+..+|..
T Consensus         6 yiN~~L~s   13 (151)
T PF11559_consen    6 YINQQLLS   13 (151)
T ss_pred             HHHHHHHH
Confidence            34444443

pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.

>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]

Probab=88.24  E-value=3.8  Score=41.87  Aligned_cols=47  Identities=23%  Similarity=0.353  Sum_probs=18.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHH
Q 046695          467 GEIEQLKASIAERDKHIENLNRSLDSLKAERDRLESDVISRDDRMDQ  513 (604)
Q Consensus       467 ~eIs~lk~el~e~~~~Le~L~~ek~~Le~el~~Leqe~~s~r~~I~e  513 (604)
                      .+...+..++.+..+.|+.|..+...+++.+..+..+++.++....+
T Consensus       156 ~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~E  202 (290)
T COG4026         156 KELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDE  202 (290)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHH
Confidence            33333333333333333333333333333333333333333333333

>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition

Probab=87.25  E-value=0.93  Score=49.55  Aligned_cols=61  Identities=20%  Similarity=0.348  Sum_probs=42.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 046695          506 SRDDRMDQMEKHLQQLHMEHTELIKGAEDAHRMVGELRLKAKELEEEIEKQRVVILEGAEE  566 (604)
Q Consensus       506 s~r~~I~emE~~L~qLr~E~e~le~~l~elk~kl~ELK~rv~eLeEeve~qk~~i~~~aEe  566 (604)
                      ++...|.+++..|..+......+.+.+......+..+..++..|+.+..+.++.|.+.-|+
T Consensus       141 ~l~~Ri~e~Eeris~lEd~~~~i~~~~~~~~k~i~~l~~kl~DlEnrsRRnNiRIiGiPEg  201 (370)
T PF02994_consen  141 SLNSRIDELEERISELEDRIEEIEQAIKELEKRIKKLEDKLDDLENRSRRNNIRIIGIPEG  201 (370)
T ss_dssp             ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTEEEEES----
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhccCCceeEEecCCC
Confidence            3455666666666666666666666666677777888889999999999999999988776

Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.

>PF13166 AAA_13: AAA domain

Probab=87.04  E-value=70  Score=37.57  Aligned_cols=27  Identities=33%  Similarity=0.390  Sum_probs=18.2

Q ss_pred             hHHHHHHhhhHHHHHHHHhhhhhhhhh
Q 046695          189 QGLQRKVNELETELREAKEKLHSQEER  215 (604)
Q Consensus       189 ~~l~~~~~~le~e~~~~~~k~~~~~e~  215 (604)
                      +.|...-++++.++.+++.++......
T Consensus        85 ~~Lge~~~~~~~~I~~l~~~l~~~~~~  111 (712)
T PF13166_consen   85 FTLGEENIEIEKEIEELKEELKKLEKE  111 (712)
T ss_pred             eehhhhhHHHHHHHHHHHHHHHHHHHH
Confidence            356666677777777777777766443

>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]

Probab=87.02  E-value=74  Score=37.83  Aligned_cols=58  Identities=14%  Similarity=0.250  Sum_probs=30.4

Q ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 046695          478 ERDKHIENLNRSLDSLKAERDRLESDVISRDDRMDQMEKHLQQLHMEHTELIKGAEDA  535 (604)
Q Consensus       478 e~~~~Le~L~~ek~~Le~el~~Leqe~~s~r~~I~emE~~L~qLr~E~e~le~~l~el  535 (604)
                      .....+..+.........++..|...+..++.....++.....+..+.+.+-......
T Consensus       224 ~~~~~~~~l~~~~~~~~~~i~~l~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~  281 (670)
T KOG0239|consen  224 DLRRNIKPLEGLESTIKKKIQALQQELEELKAELKELNDQVSLLTREVQEALKESNTL  281 (670)
T ss_pred             hHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444555555555555555555555555555555555555555555444444333

>PF15397 DUF4618: Domain of unknown function (DUF4618)

Probab=86.48  E-value=46  Score=34.95  Aligned_cols=19  Identities=16%  Similarity=0.136  Sum_probs=10.4

Q ss_pred             HHHhhhhHHHHHHHHHHhh
Q 046695          440 WESRGRSLEDELRIIKTQK  458 (604)
Q Consensus       440 le~~i~sLe~eIkql~~E~  458 (604)
                      +..+|..|..+|.++....
T Consensus       118 K~vqIa~L~rqlq~lk~~q  136 (258)
T PF15397_consen  118 KAVQIANLVRQLQQLKDSQ  136 (258)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            3345556666666655544

>PRK09343 prefoldin subunit beta; Provisional

Probab=86.23  E-value=13  Score=34.46  Aligned_cols=29  Identities=21%  Similarity=0.184  Sum_probs=11.2

Q ss_pred             hHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 046695          425 GLYEEKACLVEQLREWESRGRSLEDELRI  453 (604)
Q Consensus       425 ~LqEk~~sLe~eL~ele~~i~sLe~eIkq  453 (604)
                      .+......+..++.-+..+++.++.++..
T Consensus        11 ~~~~~~q~lq~~l~~~~~q~~~le~q~~e   39 (121)
T PRK09343         11 AQLAQLQQLQQQLERLLQQKSQIDLELRE   39 (121)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333334444444333333333333333

>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]

Probab=86.15  E-value=44  Score=34.36  Aligned_cols=56  Identities=13%  Similarity=0.256  Sum_probs=25.9

Q ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhchHH
Q 046695          361 KDIATWKSKLNSERKEVSKLQERIKSLKTSLSDRDHEVRDLKMAVSDAEQKIFPEK  416 (604)
Q Consensus       361 ~eie~i~~kLE~e~~ei~~LqeeI~eLk~qlq~leeeI~eLk~~l~d~eekls~eK  416 (604)
                      .++..+..........+..+.+.+..++.++..++..|.++++....+.......+
T Consensus        92 ~~~~~le~~~~~~~~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~~~~~l~ar~~~ak  147 (225)
T COG1842          92 EEKQSLEDLAKALEAELQQAEEQVEKLKKQLAALEQKIAELRAKKEALKARKAAAK  147 (225)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444444444444444455555555555555555555444444433333333

>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []

Probab=86.12  E-value=36  Score=35.97  Aligned_cols=56  Identities=16%  Similarity=0.299  Sum_probs=27.8

Q ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 046695          475 SIAERDKHIENLNRSLDSLKAERDRLESDVISRDDRMDQMEKHLQQLHMEHTELIK  530 (604)
Q Consensus       475 el~e~~~~Le~L~~ek~~Le~el~~Leqe~~s~r~~I~emE~~L~qLr~E~e~le~  530 (604)
                      ++..+......|....+.++...+.|..++..+...+.-++.+|+.-+..++.+++
T Consensus        61 e~s~LkREnq~l~e~c~~lek~rqKlshdlq~Ke~qv~~lEgQl~s~Kkqie~Leq  116 (307)
T PF10481_consen   61 EYSALKRENQSLMESCENLEKTRQKLSHDLQVKESQVNFLEGQLNSCKKQIEKLEQ  116 (307)
T ss_pred             hhhhhhhhhhhHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333444444444444455555555555555555555555555555554444443

Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].

>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences

Probab=86.06  E-value=9.7  Score=36.81  Aligned_cols=52  Identities=25%  Similarity=0.264  Sum_probs=30.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hhhhhHHHHHHHHhhhHHHHHhh
Q 046695          533 EDAHRMVGELRLKAKELEEEIEKQRVVIL-EGAEEKREAIRQLCFSLEHYRSG  584 (604)
Q Consensus       533 ~elk~kl~ELK~rv~eLeEeve~qk~~i~-~~aEeKreAIrQlcfslehyR~~  584 (604)
                      .++...+.+|+..+..|+.+++..+.... -.++++-.+.+..=++..+||.+
T Consensus       112 ~el~~~i~~l~~e~~~l~~kL~~l~~~~~~vs~ee~~~~~~~~~~~~k~w~kR  164 (169)
T PF07106_consen  112 EELREEIEELEEEIEELEEKLEKLRSGSKPVSPEEKEKLEKEYKKWRKEWKKR  164 (169)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            44556666777777777777766554222 23566666666666655555543

TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].

>TIGR02977 phageshock_pspA phage shock protein A

Probab=86.04  E-value=41  Score=33.99  Aligned_cols=40  Identities=13%  Similarity=0.307  Sum_probs=21.9

Q ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 046695          329 LSEAEIASLKQEVESNRSEKIQTLQNQLQLAQKDIATWKSK  369 (604)
Q Consensus       329 ~se~eI~~Lk~EL~sl~~~kieqLq~eLe~~q~eie~i~~k  369 (604)
                      ..+..+...+..+..+ -...+.+..++......++.|..+
T Consensus        35 em~~~l~~ar~~lA~~-~a~~k~~e~~~~~~~~~~~~~~~~   74 (219)
T TIGR02977        35 EMEDTLVEVRTTSART-IADKKELERRVSRLEAQVADWQEK   74 (219)
T ss_pred             HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333444555544444 345566666666666666666544

Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.

>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins

Probab=85.69  E-value=37  Score=33.12  Aligned_cols=37  Identities=27%  Similarity=0.323  Sum_probs=23.1

Q ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 046695          419 IKAEILGLYEEKACLVEQLREWESRGRSLEDELRIIK  455 (604)
Q Consensus       419 l~~ei~~LqEk~~sLe~eL~ele~~i~sLe~eIkql~  455 (604)
                      +...+.-++++-..|+..-..++.++..+..-|....
T Consensus        89 lQ~~L~~~re~E~qLr~rRD~LErrl~~l~~tierAE  125 (159)
T PF05384_consen   89 LQVRLAMLREREKQLRERRDELERRLRNLEETIERAE  125 (159)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5566666666666777777666666666655555433

The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction

>PRK10884 SH3 domain-containing protein; Provisional

Probab=85.62  E-value=11  Score=38.14  Aligned_cols=21  Identities=19%  Similarity=0.297  Sum_probs=8.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q 046695          311 NKVKALMEELRITKEKLMLSE  331 (604)
Q Consensus       311 ~kl~~L~eEL~~~~eeL~~se  331 (604)
                      ..+..++.++..+..+|.+..
T Consensus        93 ~rlp~le~el~~l~~~l~~~~  113 (206)
T PRK10884         93 TRVPDLENQVKTLTDKLNNID  113 (206)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            334444444444333333333

>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]

Probab=85.54  E-value=67  Score=35.98  Aligned_cols=6  Identities=50%  Similarity=0.761  Sum_probs=2.8

Q ss_pred             cccCCC
Q 046695          103 LQSQGS  108 (604)
Q Consensus       103 ~~~~~~  108 (604)
                      ++.|||
T Consensus        18 ~rLqGs   23 (502)
T KOG0982|consen   18 MRLQGS   23 (502)
T ss_pred             cccCCC
Confidence            334455

>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=85.53  E-value=47  Score=34.16  Aligned_cols=55  Identities=22%  Similarity=0.420  Sum_probs=21.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 046695          468 EIEQLKASIAERDKHIENLNRSLDSLKAERDRLESDVISRDDRMDQMEKHLQQLH  522 (604)
Q Consensus       468 eIs~lk~el~e~~~~Le~L~~ek~~Le~el~~Leqe~~s~r~~I~emE~~L~qLr  522 (604)
                      .|.++.++...+...+..+.++.+.++.....+...+.+....+.+++.++.++.
T Consensus        43 ~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~   97 (251)
T PF11932_consen   43 RIDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIE   97 (251)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333333333333333334444444444444444444444444433333

However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.

>KOG2991 consensus Splicing regulator [RNA processing and modification]

Probab=85.08  E-value=54  Score=34.46  Aligned_cols=186  Identities=14%  Similarity=0.184  Sum_probs=96.3

Q ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhchHHHhHHH-----HHHhHHHHHHHHHH
Q 046695          361 KDIATWKSKLNSERKEVSKLQERIKSLKTSLSDRDHEVRDLKMAVSDAEQKIFPEKAQIKA-----EILGLYEEKACLVE  435 (604)
Q Consensus       361 ~eie~i~~kLE~e~~ei~~LqeeI~eLk~qlq~leeeI~eLk~~l~d~eekls~eKa~l~~-----ei~~LqEk~~sLe~  435 (604)
                      ..|..++..-............+-+.+--++...+.++.++..++.++..+..+...+++.     .|+-++.+   |+.
T Consensus       108 d~i~nLk~se~~lkqQ~~~a~RrE~ilv~rlA~kEQEmqe~~sqi~~lK~qq~Ps~~qlR~~llDPAinl~F~r---lK~  184 (330)
T KOG2991|consen  108 DDITNLKESEEKLKQQQQEAARRENILVMRLATKEQEMQECTSQIQYLKQQQQPSVAQLRSTLLDPAINLFFLR---LKG  184 (330)
T ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHhhChHHHHHHHH---HHH
Confidence            3444444444444444444445555566666667777777777777777777665555333     33334333   444


Q ss_pred             HHHHHHHhhhhHHHHHHHHHHhhhHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhH
Q 046695          436 QLREWESRGRSLEDELRIIKTQKTELEE--------RIVGEIEQLKASIAERDKHIENLNRSLDSLKAERDRLESDVISR  507 (604)
Q Consensus       436 eL~ele~~i~sLe~eIkql~~E~~e~e~--------~le~eIs~lk~el~e~~~~Le~L~~ek~~Le~el~~Leqe~~s~  507 (604)
                      ++.       ....+|++.+.+++.-.|        .+=..|-.|.++-.+++...  -+..+..|.-++..-+..-.+.
T Consensus       185 ele-------~tk~Klee~QnelsAwkFTPdS~tGK~LMAKCR~L~qENeElG~q~--s~Gria~Le~eLAmQKs~seEl  255 (330)
T KOG2991|consen  185 ELE-------QTKDKLEEAQNELSAWKFTPDSKTGKMLMAKCRTLQQENEELGHQA--SEGRIAELEIELAMQKSQSEEL  255 (330)
T ss_pred             HHH-------HHHHHHHHHHhhhheeeecCCCcchHHHHHHHHHHHHHHHHHHhhh--hcccHHHHHHHHHHHHhhHHHH
Confidence            444       344445555554432222        34455666666655555442  2234444444554444444555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046695          508 DDRMDQMEKHLQQLHMEHTELIKGAEDAHRMVGELRLKAKELEEEIEKQRV  558 (604)
Q Consensus       508 r~~I~emE~~L~qLr~E~e~le~~l~elk~kl~ELK~rv~eLeEeve~qk~  558 (604)
                      +..-.++.+.|.+|-...+.+..-+=-+..++.+.+-++.-|++.++-+..
T Consensus       256 kssq~eL~dfm~eLdedVEgmqsTiliLQq~Lketr~~Iq~l~k~~~q~sq  306 (330)
T KOG2991|consen  256 KSSQEELYDFMEELDEDVEGMQSTILILQQKLKETRKEIQRLKKGLEQVSQ  306 (330)
T ss_pred             HHhHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            555555555555555555555554444445555555555444444444333

>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]

Probab=84.24  E-value=81  Score=35.83  Aligned_cols=31  Identities=16%  Similarity=0.134  Sum_probs=18.4

Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 046695          496 ERDRLESDVISRDDRMDQMEKHLQQLHMEHT  526 (604)
Q Consensus       496 el~~Leqe~~s~r~~I~emE~~L~qLr~E~e  526 (604)
                      .+..+++.+.+.+-.+.++-..+...+.++-
T Consensus       552 s~l~~eq~vqs~~i~ld~~~~~~n~~r~~i~  582 (622)
T COG5185         552 SILDAEQLVQSTEIKLDELKVDLNRKRYKIH  582 (622)
T ss_pred             hHhhHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence            4445666666666666666666655555443

>PF14915 CCDC144C: CCDC144C protein coiled-coil region

Probab=84.09  E-value=64  Score=34.53  Aligned_cols=99  Identities=20%  Similarity=0.198  Sum_probs=50.7

Q ss_pred             HHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 046695          422 EILGLYEEKACLVEQLREWESRGRSLEDELRIIKTQKTELEERIVGEIEQLKASIAERDKHIENLNRSLDSLKAERDRLE  501 (604)
Q Consensus       422 ei~~LqEk~~sLe~eL~ele~~i~sLe~eIkql~~E~~e~e~~le~eIs~lk~el~e~~~~Le~L~~ek~~Le~el~~Le  501 (604)
                      .+..|..+.-..+..|++..--+.++...+.+.+.++.+++-....+-.+...    ....=+.+......++.+--.|.
T Consensus       159 K~nsLe~elh~trdaLrEKtL~lE~~QrdL~Qtq~q~KE~e~m~qne~~kv~k----~~~Kqes~eERL~QlqsEN~LLr  234 (305)
T PF14915_consen  159 KFNSLEIELHHTRDALREKTLALESVQRDLSQTQCQIKEIEHMYQNEQDKVNK----YIGKQESLEERLSQLQSENMLLR  234 (305)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444455555555555556677777777777775555222222222222    22223344445555555555566


Q ss_pred             HHHHhHHHHHHHHHHHHHHHHHH
Q 046695          502 SDVISRDDRMDQMEKHLQQLHME  524 (604)
Q Consensus       502 qe~~s~r~~I~emE~~L~qLr~E  524 (604)
                      +++....+.....++-+...+..
T Consensus       235 QQLddA~~K~~~kek~ViniQ~~  257 (305)
T PF14915_consen  235 QQLDDAHNKADNKEKTVINIQDQ  257 (305)
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHH
Confidence            66666655555555544444433

>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]

Probab=83.84  E-value=1e+02  Score=36.59  Aligned_cols=102  Identities=13%  Similarity=0.192  Sum_probs=55.4

Q ss_pred             hhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH-HHHhHHHHHHHHHHHHH--HHHHHHHHHHHHHHhhhhhh
Q 046695          488 RSLDSLKAERDRLESDVISRDDRMDQMEKHLQQLHMEHTE-LIKGAEDAHRMVGELRL--KAKELEEEIEKQRVVILEGA  564 (604)
Q Consensus       488 ~ek~~Le~el~~Leqe~~s~r~~I~emE~~L~qLr~E~e~-le~~l~elk~kl~ELK~--rv~eLeEeve~qk~~i~~~a  564 (604)
                      .+.+.+...+..|..++..+.+.+.++...|..+...+.- ...-+..++..+...-.  ...-..+.+.++..+|-.++
T Consensus       160 ~kLeelr~~L~~L~~ek~~Rlekv~~~~~~I~~l~~~Lg~~~~~~vt~~~~sL~~~~~~~~~~is~etl~~L~~~v~~l~  239 (660)
T KOG4302|consen  160 EKLEELREHLNELQKEKSDRLEKVLELKEEIKSLCSVLGLDFSMTVTDVEPSLVDHDGEQSRSISDETLDRLDKMVKKLK  239 (660)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccchhhhhhhhhhccCcccccCCHHHHHHHHHHHHHHH
Confidence            5667777777888888888888887777777776665410 00000111111111110  01122344455555555555


Q ss_pred             hhHHHHHHHHhhhHHHHHhhHHHHHHHHh
Q 046695          565 EEKREAIRQLCFSLEHYRSGYISLRKAVI  593 (604)
Q Consensus       565 EeKreAIrQlcfslehyR~~y~~L~~~~~  593 (604)
                      ++|-.=+    -.|.+||.-...||..+.
T Consensus       240 ~~k~qr~----~kl~~l~~~~~~LWn~l~  264 (660)
T KOG4302|consen  240 EEKKQRL----QKLQDLRTKLLELWNLLD  264 (660)
T ss_pred             HHHHHHH----HHHHHHHHHHHHHHHhcc
Confidence            5553222    238888888888887663

>TIGR00618 sbcc exonuclease SbcC

Probab=83.82  E-value=1.2e+02  Score=37.60  Aligned_cols=23  Identities=13%  Similarity=-0.010  Sum_probs=12.8

Q ss_pred             HHHHhhhhcHHHHHHHHHHHhhh
Q 046695          245 LANEKIHISNEEILRLKIELQKY  267 (604)
Q Consensus       245 ~~n~~~~~~e~ei~~lk~ele~~  267 (604)
                      .+.++......++..|..++..+
T Consensus       184 ~~~~~~~~~~~~~~~l~~~~~~~  206 (1042)
T TIGR00618       184 MEFAKKKSLHGKAELLTLRSQLL  206 (1042)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhcc
Confidence            44444455566666666666443

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []

Probab=83.58  E-value=76  Score=34.97  Aligned_cols=23  Identities=22%  Similarity=0.205  Sum_probs=17.3

Q ss_pred             HHHHhhhhcHHHHHHHHHHHhhh
Q 046695          245 LANEKIHISNEEILRLKIELQKY  267 (604)
Q Consensus       245 ~~n~~~~~~e~ei~~lk~ele~~  267 (604)
                      ..|.+|..+=.+|...|.+|+..
T Consensus        43 ~~~~~L~~Ri~di~~wk~eL~~~   65 (384)
T PF03148_consen   43 DSNKRLRQRIRDIRFWKNELERE   65 (384)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            56666777777888888888776

The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule

>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer

Probab=83.47  E-value=2.2  Score=45.79  Aligned_cols=88  Identities=18%  Similarity=0.328  Sum_probs=19.3

Q ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHH
Q 046695          430 KACLVEQLREWESRGRSLEDELRIIKTQKTELEERIVGEIEQLKASIAERDKHIENLNRSLDSLKAERDRLESDVISRDD  509 (604)
Q Consensus       430 ~~sLe~eL~ele~~i~sLe~eIkql~~E~~e~e~~le~eIs~lk~el~e~~~~Le~L~~ek~~Le~el~~Leqe~~s~r~  509 (604)
                      +..+...+......+..+...|..++..+   . .+...|..+...+......|-.|......+.-.+..|+.++-...-
T Consensus        65 L~~l~~sl~~~~s~L~sLsstV~~lq~Sl---~-~lsssVs~lS~~ls~h~ssIS~Lqs~v~~lsTdvsNLksdVSt~aL  140 (326)
T PF04582_consen   65 LQDLASSLADMTSELNSLSSTVTSLQSSL---S-SLSSSVSSLSSTLSDHSSSISDLQSSVSALSTDVSNLKSDVSTQAL  140 (326)
T ss_dssp             ---------------------------------------------------------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H-HHhhhHHhhhhhhhhhhhhHHHHHHhhhhhhhhhhhhhhhhhhhcc
Confidence            34444444444444444555555555444   3 3445555555555555555555555555555555555555555555


Q ss_pred             HHHHHHHHHHHH
Q 046695          510 RMDQMEKHLQQL  521 (604)
Q Consensus       510 ~I~emE~~L~qL  521 (604)
                      .|..++..++.|
T Consensus       141 ~ItdLe~RV~~L  152 (326)
T PF04582_consen  141 NITDLESRVKAL  152 (326)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             hHhhHHHHHHHH
Confidence            555555554443

It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.

>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=82.86  E-value=60  Score=33.40  Aligned_cols=58  Identities=21%  Similarity=0.284  Sum_probs=25.1

Q ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHH
Q 046695          447 LEDELRIIKTQKTELEERIVGEIEQLKASIAERDKHIENLNRSLDSLKAERDRLESDVISRD  508 (604)
Q Consensus       447 Le~eIkql~~E~~e~e~~le~eIs~lk~el~e~~~~Le~L~~ek~~Le~el~~Leqe~~s~r  508 (604)
                      ...++.++..+.   . .+..+|..+..+++.+......+.+.....+.++..|.+++.+..
T Consensus        40 sQ~~id~~~~e~---~-~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~   97 (251)
T PF11932_consen   40 SQKRIDQWDDEK---Q-ELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIE   97 (251)
T ss_pred             HHHHHHHHHHHH---H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444444444   2 344444444444444444444444444444444444444333333

However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.

>PRK10884 SH3 domain-containing protein; Provisional

Probab=82.80  E-value=14  Score=37.42  Aligned_cols=19  Identities=16%  Similarity=0.366  Sum_probs=8.3

Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q 046695          348 KIQTLQNQLQLAQKDIATW  366 (604)
Q Consensus       348 kieqLq~eLe~~q~eie~i  366 (604)
                      ++..++.++..++.+++.+
T Consensus        94 rlp~le~el~~l~~~l~~~  112 (206)
T PRK10884         94 RVPDLENQVKTLTDKLNNI  112 (206)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            3444444444444443333

>PLN02939 transferase, transferring glycosyl groups

Probab=82.51  E-value=1.4e+02  Score=37.13  Aligned_cols=37  Identities=30%  Similarity=0.374  Sum_probs=21.0

Q ss_pred             HHHHHHHHhhHHHHHHHHHh----------hhhcHHHHHHHHHHHhh
Q 046695          230 EALFARIVGYEKKLRLANEK----------IHISNEEILRLKIELQK  266 (604)
Q Consensus       230 ~~l~~~~~~~~~el~~~n~~----------~~~~e~ei~~lk~ele~  266 (604)
                      ++|+.+|+-++-.|..+..+          .+..++++.+|..+|-.
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  212 (977)
T PLN02939        166 EALQGKINILEMRLSETDARIKLAAQEKIHVEILEEQLEKLRNELLI  212 (977)
T ss_pred             HHHHhhHHHHHHHhhhhhhhhhhhhhccccchhhHHHHHHHhhhhhc
Confidence            56677777777666654333          34445555555555544

>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences

Probab=82.42  E-value=22  Score=34.33  Aligned_cols=64  Identities=31%  Similarity=0.395  Sum_probs=34.6

Q ss_pred             HHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 046695          423 ILGLYEEKACLVEQLREWESRGRSLEDELRIIKTQKTELEERIVGEIEQLKASIAERDKHIENLNR  488 (604)
Q Consensus       423 i~~LqEk~~sLe~eL~ele~~i~sLe~eIkql~~E~~e~e~~le~eIs~lk~el~e~~~~Le~L~~  488 (604)
                      +..+...+..|+.++..+...+..+..++..+.......  ++...|.++..++..+...|..|..
T Consensus        74 l~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~--el~~~i~~l~~e~~~l~~kL~~l~~  137 (169)
T PF07106_consen   74 LAELDAEIKELREELAELKKEVKSLEAELASLSSEPTNE--ELREEIEELEEEIEELEEKLEKLRS  137 (169)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH--HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            333333444444444444444445555555555555222  3566666777776666666666654

TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].

>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]

Probab=82.38  E-value=35  Score=38.33  Aligned_cols=25  Identities=20%  Similarity=0.157  Sum_probs=10.1

Q ss_pred             HHHHHHHHHHhhhhHHHHHHHHHHh
Q 046695          433 LVEQLREWESRGRSLEDELRIIKTQ  457 (604)
Q Consensus       433 Le~eL~ele~~i~sLe~eIkql~~E  457 (604)
                      +...+..++..|+.|+++++.+-.-
T Consensus       426 ~~~~~~s~d~~I~dLqEQlrDlmf~  450 (493)
T KOG0804|consen  426 EKEALGSKDEKITDLQEQLRDLMFF  450 (493)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHhee
Confidence            3333333344444444444444333

>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans

Probab=82.11  E-value=45  Score=37.06  Aligned_cols=48  Identities=23%  Similarity=0.368  Sum_probs=29.3

Q ss_pred             HHHHHHHhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhh
Q 046695          362 DIATWKSKLNSERKEVSKLQERIKSLKTSLSDRDHEVRDLKMAVSDAEQKI  412 (604)
Q Consensus       362 eie~i~~kLE~e~~ei~~LqeeI~eLk~qlq~leeeI~eLk~~l~d~eekl  412 (604)
                      ++.-+...|++++-+...|+++++++..-.   ++||..|++.+.+.++++
T Consensus       245 e~~~~~~~LqEEr~R~erLEeqlNd~~elH---q~Ei~~LKqeLa~~EEK~  292 (395)
T PF10267_consen  245 EYQFILEALQEERYRYERLEEQLNDLTELH---QNEIYNLKQELASMEEKM  292 (395)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhHHHHH
Confidence            344555666667666666666666555432   556777777777666554

Its function is unknown.

>KOG1937 consensus Uncharacterized conserved protein [Function unknown]

Probab=82.04  E-value=96  Score=35.06  Aligned_cols=64  Identities=14%  Similarity=0.339  Sum_probs=33.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhhh----HHHHHhh
Q 046695          509 DRMDQMEKHLQQLHMEHTELIKGAEDAHRMVGELRLKAKELEEEIEKQRVVILEGAEEKREAIRQLCFS----LEHYRSG  584 (604)
Q Consensus       509 ~~I~emE~~L~qLr~E~e~le~~l~elk~kl~ELK~rv~eLeEeve~qk~~i~~~aEeKreAIrQlcfs----lehyR~~  584 (604)
                      ..|.++...++..+..+.++.....++       +.+.+.+-+.+-++=.+           +-+|-|-    =+|||-.
T Consensus       389 qrikEi~gniRKq~~DI~Kil~etreL-------qkq~ns~se~L~Rsfav-----------tdellf~sakhddhvR~a  450 (521)
T KOG1937|consen  389 QRIKEIDGNIRKQEQDIVKILEETREL-------QKQENSESEALNRSFAV-----------TDELLFMSAKHDDHVRLA  450 (521)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHhhhHHH-----------HHHHHHHHhccCHHHHHH
Confidence            345555555555555555555554433       33333444444333333           3345443    3788988


Q ss_pred             HHHHHH
Q 046695          585 YISLRK  590 (604)
Q Consensus       585 y~~L~~  590 (604)
                      |+.|-+
T Consensus       451 ykllt~  456 (521)
T KOG1937|consen  451 YKLLTR  456 (521)
T ss_pred             HHHHHH
Confidence            888744

>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]

Probab=81.95  E-value=57  Score=32.36  Aligned_cols=68  Identities=21%  Similarity=0.307  Sum_probs=47.7

Q ss_pred             HHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 046695          421 AEILGLYEEKACLVEQLREWESRGRSLEDELRIIKTQKTELEERIVGEIEQLKASIAERDKHIENLNRSL  490 (604)
Q Consensus       421 ~ei~~LqEk~~sLe~eL~ele~~i~sLe~eIkql~~E~~e~e~~le~eIs~lk~el~e~~~~Le~L~~ek  490 (604)
                      .+.+.+-.++..|..++..+...++.++.+|+.+..-+. .+ ++++.|..|+.+.+...+.|..+.+-.
T Consensus        79 eel~~ld~~i~~l~ek~q~l~~t~s~veaEik~L~s~Lt-~e-emQe~i~~L~kev~~~~erl~~~k~g~  146 (201)
T KOG4603|consen   79 EELQVLDGKIVALTEKVQSLQQTCSYVEAEIKELSSALT-TE-EMQEEIQELKKEVAGYRERLKNIKAGT  146 (201)
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-hH-HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            355566666666666667677777778888887777772 22 477888888888888888877766533

>PF05276 SH3BP5: SH3 domain-binding protein 5 (SH3BP5); InterPro: IPR007940 The SH3 domain-binding protein inhibits the auto and transphophorylation of BTK and acts as a negative regulator of BTK-related signalling in B cells

Probab=81.68  E-value=70  Score=33.23  Aligned_cols=86  Identities=22%  Similarity=0.233  Sum_probs=52.5

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHH----------HHHHHHHHHHHHHHhhhhhH
Q 046695          325 EKLMLSEAEIASLKQEVESNRSEKIQTLQNQLQLAQKDIATWKSKLNSER----------KEVSKLQERIKSLKTSLSDR  394 (604)
Q Consensus       325 eeL~~se~eI~~Lk~EL~sl~~~kieqLq~eLe~~q~eie~i~~kLE~e~----------~ei~~LqeeI~eLk~qlq~l  394 (604)
                      +.|..+-.+||.|..+|...    ...+..-+......|..+..+|..-.          .....++.++.......+.+
T Consensus        14 e~LN~atd~IN~lE~~L~~a----r~~fr~~l~e~~~kL~~~~kkLg~~I~karPYyea~~~a~~aq~e~q~Aa~~yerA   89 (239)
T PF05276_consen   14 EKLNQATDEINRLENELDEA----RATFRRLLSESTKKLNELAKKLGSCIEKARPYYEARRKAKEAQQEAQKAALQYERA   89 (239)
T ss_pred             HHHHHhHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56777888888888887654    34555556666666666666666433          23344455555555555555


Q ss_pred             HHHHHHHHHHHHHHHhhhch
Q 046695          395 DHEVRDLKMAVSDAEQKIFP  414 (604)
Q Consensus       395 eeeI~eLk~~l~d~eekls~  414 (604)
                      ..-....++.|..+++.+..
T Consensus        90 ~~~h~aAKe~v~laEq~l~~  109 (239)
T PF05276_consen   90 NSMHAAAKEMVALAEQSLMS  109 (239)
T ss_pred             HHHHHHHHHHHHHHHHHHhc
Confidence            55555566666666655543

>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional

Probab=81.41  E-value=35  Score=40.64  Aligned_cols=60  Identities=18%  Similarity=0.187  Sum_probs=33.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhHHHHHhhHHHHHHHH
Q 046695          532 AEDAHRMVGELRLKAKELEEEIEKQRVVILEGAEEKREAIRQLCFSLEHYRSGYISLRKAV  592 (604)
Q Consensus       532 l~elk~kl~ELK~rv~eLeEeve~qk~~i~~~aEeKreAIrQlcfslehyR~~y~~L~~~~  592 (604)
                      +..-+=.+..++.++..|..++...+..+.....- --.+++|---.+-.|.-|..|.+-+
T Consensus       334 ~~~~hP~v~~l~~~~~~L~~~~~~l~~~~~~~p~~-e~~~~~L~R~~~~~~~lY~~lL~r~  393 (726)
T PRK09841        334 YKKDHPTYRALLEKRQTLEQERKRLNKRVSAMPST-QQEVLRLSRDVEAGRAVYLQLLNRQ  393 (726)
T ss_pred             hcccCchHHHHHHHHHHHHHHHHHHHHHHHhccHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333344444444555555555555555554433 3356667777788888887766544

>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []

Probab=81.11  E-value=92  Score=34.23  Aligned_cols=27  Identities=26%  Similarity=0.484  Sum_probs=21.1

Q ss_pred             CCchHHHHHHhhhHHHHHHHHhhhhhh
Q 046695          186 GDDQGLQRKVNELETELREAKEKLHSQ  212 (604)
Q Consensus       186 ~~~~~l~~~~~~le~e~~~~~~k~~~~  212 (604)
                      |..+.+-+|..-|..|+.|+++.+...
T Consensus        87 ~e~Es~~~kl~RL~~Ev~EL~eEl~~~  113 (388)
T PF04912_consen   87 SEKESPEQKLQRLRREVEELKEELEKR  113 (388)
T ss_pred             CCcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            556778888888888888888877655

It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex

>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures

Probab=80.87  E-value=20  Score=30.41  Aligned_cols=54  Identities=24%  Similarity=0.397  Sum_probs=23.1

Q ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 046695          477 AERDKHIENLNRSLDSLKAERDRLESDVISRDDRMDQMEKHLQQLHMEHTELIK  530 (604)
Q Consensus       477 ~e~~~~Le~L~~ek~~Le~el~~Leqe~~s~r~~I~emE~~L~qLr~E~e~le~  530 (604)
                      ++.+..|..|..+=..|......+..-+..+|..+.+.+..+..+...+.....
T Consensus         8 ~EKDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~   61 (74)
T PF12329_consen    8 AEKDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEK   61 (74)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333334444443333444444444444444444444444444444444433333

The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.

>KOG2196 consensus Nuclear porin [Nuclear structure]

Probab=80.83  E-value=62  Score=33.68  Aligned_cols=13  Identities=15%  Similarity=0.384  Sum_probs=7.4

Q ss_pred             HHHHHhhhhhHHH
Q 046695          384 IKSLKTSLSDRDH  396 (604)
Q Consensus       384 I~eLk~qlq~lee  396 (604)
                      |+.+..++.+.++
T Consensus        80 iNkWs~el~~Qe~   92 (254)
T KOG2196|consen   80 INKWSLELEEQER   92 (254)
T ss_pred             HHHHHHHHHHHHH
Confidence            4666666655443

>PF15450 DUF4631: Domain of unknown function (DUF4631)

Probab=80.80  E-value=1.1e+02  Score=35.06  Aligned_cols=56  Identities=27%  Similarity=0.439  Sum_probs=50.9

Q ss_pred             hhhchHHHHhhhhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 046695          288 VNMWDAELQEGINGLETPSLDLDNKVKALMEELRITKEKLMLSEAEIASLKQEVES  343 (604)
Q Consensus       288 ~~~~~~~Lq~~I~eLE~el~el~~kl~~L~eEL~~~~eeL~~se~eI~~Lk~EL~s  343 (604)
                      .+-|++.|+..+..+.+....+....-.|..+|..+...++....++..|.+++..
T Consensus        18 l~~~~~~lqaev~~lr~~~~~~e~~~~~l~~el~qvr~~~~~Q~seL~~l~~ev~~   73 (531)
T PF15450_consen   18 LEQWVAELQAEVACLRGHKERCERATLSLLRELLQVRARVQLQDSELMQLRQEVKQ   73 (531)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            45699999999999999999999999999999999999999999999999998753

>COG3096 MukB Uncharacterized protein involved in chromosome partitioning [Cell division and chromosome partitioning]

Probab=80.58  E-value=1.4e+02  Score=35.97  Aligned_cols=70  Identities=20%  Similarity=0.219  Sum_probs=39.3

Q ss_pred             HHHhhhhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHHHHHHHH
Q 046695          294 ELQEGINGLETPSLDLDNKVKALMEELRITKEKLMLSEAEIASLKQEV-ESNRSEKIQTLQNQLQLAQKDIA  364 (604)
Q Consensus       294 ~Lq~~I~eLE~el~el~~kl~~L~eEL~~~~eeL~~se~eI~~Lk~EL-~sl~~~kieqLq~eLe~~q~eie  364 (604)
                      .+...-++++..+......-..+..++..+++.+.-+.+-|..+.--. +++ ..+++.+..+|..++....
T Consensus       840 ~~~~~Rnei~R~l~~~~~~~QQ~R~Q~d~aKe~~~~LnkLiPql~ll~dE~L-~dRveE~~E~L~~a~e~~~  910 (1480)
T COG3096         840 QLNSRRNELERALSNHENDNQQQRIQFDQAKEGVTALNRLIPQLNLLADESL-ADRVEEIRERLDEAQEAAR  910 (1480)
T ss_pred             HHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhhhhhccccchhH-HHHHHHHHHHHHHHHHHHH
Confidence            444444455555555544444555566666666666666666554322 233 4567777777777664433

>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []

Probab=80.41  E-value=77  Score=32.87  Aligned_cols=36  Identities=22%  Similarity=0.283  Sum_probs=11.8

Q ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046695          522 HMEHTELIKGAEDAHRMVGELRLKAKELEEEIEKQR  557 (604)
Q Consensus       522 r~E~e~le~~l~elk~kl~ELK~rv~eLeEeve~qk  557 (604)
                      ..++..|...+..+...+..|...+..-+.+....+
T Consensus        74 ~eEk~~Le~e~~e~~~~i~~l~ee~~~ke~Ea~~lq  109 (246)
T PF00769_consen   74 EEEKEQLEQELREAEAEIARLEEESERKEEEAEELQ  109 (246)
T ss_dssp             -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333444444444444444444444444443333

Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	604
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-20
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-06
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	2e-18
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	1e-16
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	2e-14
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	5e-13
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	2e-08
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	3e-12
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	2e-07
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	2e-05
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	1e-04
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	6e-06
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	2e-04
2xs1_A	704	Programmed cell death 6-interacting protein; prote	2e-05
1sjj_A	863	Actinin; 3-helix bundle, calponin homology domain,	4e-05
1g8x_A	1010	Myosin II heavy chain fused to alpha-actinin 3; mo	6e-05
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	8e-05
2ycu_A	995	Non muscle myosin 2C, alpha-actinin; motor protein	6e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 94.9 bits (235), Expect = 2e-20
 Identities = 101/639 (15%), Positives = 176/639 (27%), Gaps = 204/639 (31%)

Query: 37  EMDQSVKRMLKLIEEDGDSFAKKAEMYYQKRPELISHVEEFYRMYRSLAERYDHVTGELR 96
           E     K +L + E+    F    +            V++  +   S  E  DH+     
Sbjct: 13  EHQYQYKDILSVFEDA---FVDNFDCK---------DVQDMPKSILSKEE-IDHIIMS-- 57

Query: 97  KNIPSDLQSQGSGISDISSELPSMCPSPDQRPSRRKSGPRAAGFDFFLGSAGSSAEFYPK 156
                                           + R        F   L       + + +
Sbjct: 58  -------------------------KDAVSG-TLRL-------FWTLLSKQEEMVQKFVE 84

Query: 157 EGDES------SSISDSESESDSSSVNNYSAFAGN--GDDQGL-QRKVN--ELETELREA 205
           E          S I   E    S     Y         D+Q   +  V+  +   +LR+A
Sbjct: 85  EVLRINYKFLMSPIKT-EQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQA 143

Query: 206 KEKLHSQEERIADESMKGA-KNENPEALFARIVGYEKKLRLANEKIH---ISNEEILRLK 261
             +L    + +  + + G+ K      +   +    K     + KI    + N       
Sbjct: 144 LLEL-RPAKNVLIDGVLGSGKT----WVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETV 198

Query: 262 IE-LQKYNSSETNNYLQ-ADFGSPAEINVNMWDAELQEGI------NGLETPSLDLDN-- 311
           +E LQK       N+   +D  S  ++ ++   AEL+  +      N L    L L N  
Sbjct: 199 LEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCL----LVLLNVQ 254

Query: 312 ----------KVKALM----------------EELRITKEKLMLSEAEIASL-----KQE 340
                       K L+                  + +    + L+  E+ SL        
Sbjct: 255 NAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCR 314

Query: 341 VESNRSEKIQTLQNQLQLA------QKDIATWKSKLNSERKEVSKLQERIKSLKTSLSDR 394
            +    E + T  N  +L+      +  +ATW    N +     KL   I+S   SL+  
Sbjct: 315 PQDLPREVLTT--NPRRLSIIAESIRDGLATWD---NWKHVNCDKLTTIIES---SLNVL 366

Query: 395 D-HEVRDLKMAVSDAEQKIFPEKAQIKAEILGLYEEKACLVEQLREWESRGRSLEDELRI 453
           +  E R +   +S     +FP  A I   +L L             W             
Sbjct: 367 EPAEYRKMFDRLS-----VFPPSAHIPTILLSLI------------WFD----------- 398

Query: 454 IKTQKTELEERIVGEIEQLKASIAERDK-----HIENLNRSLDSLKAERDRLESDVISRD 508
                      +V ++   K S+ E+        I ++   L         L   ++   
Sbjct: 399 ---VIKSDVMVVVNKLH--KYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHY 453

Query: 509 DRMDQMEKHLQQLHMEHTELIKGAEDA--------HRMVGELRLKAKELEEEIEKQRVVI 560
           +     +           +LI    D         H       LK  E  E +   R+V 
Sbjct: 454 NIPKTFDSD---------DLIPPYLDQYFYSHIGHH-------LKNIEHPERMTLFRMVF 497

Query: 561 LE------------GAEEKREAIRQLCFSLEHYRSGYIS 587
           L+             A     +I      L+ Y+  YI 
Sbjct: 498 LDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKP-YIC 535

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 60.3 bits (145), Expect = 1e-09
 Identities = 33/199 (16%), Positives = 65/199 (32%), Gaps = 62/199 (31%)

Query: 354 NQLQLAQKDIATWKSKLNSERKEVSKLQERIKSLKTSLSDRDHEVRDLKMAVSDAEQKIF 413
            + Q   KDI             +S  ++            + + +D    V D  + I 
Sbjct: 12  GEHQYQYKDI-------------LSVFEDAFV--------DNFDCKD----VQDMPKSIL 46

Query: 414 PEKAQIKAEILGLYEEKACLVEQLREWESRGRSLEDELRIIKTQKTELEERIVGEIEQ-- 471
             K +I   I+   +             S    L      + +++ E+ ++ V E+ +  
Sbjct: 47  -SKEEID-HIIMSKDA-----------VSGTLRL---FWTLLSKQEEMVQKFVEEVLRIN 90

Query: 472 ---LKASIAERDKHIENLNRSLDSLKAERDRLESDV-------ISRDDRMDQMEKHLQQL 521
              L + I    +    + R       +RDRL +D        +SR     ++ + L +L
Sbjct: 91  YKFLMSPIKTEQRQPSMMTRMYIE---QRDRLYNDNQVFAKYNVSRLQPYLKLRQALLEL 147

Query: 522 HMEHTELIKGAEDAHRMVG 540
                 LI G      ++G
Sbjct: 148 RPAKNVLIDG------VLG 160

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 54.9 bits (131), Expect = 6e-08
 Identities = 67/452 (14%), Positives = 132/452 (29%), Gaps = 146/452 (32%)

Query: 245 LANEKI-HISN-----EEILRLKIELQKYNSSETNNY----LQADFGSPAEINVNMWDAE 294
           L+ E+I HI          LRL   L          +    L+ ++          +   
Sbjct: 46  LSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYK---------FLMS 96

Query: 295 LQEGINGLETPSLDLDNKVKALMEELRITKEKLMLSEAEIASLKQEVESNRSEKIQTLQN 354
                       +  + +  ++M  + I +   + ++ ++ + K  V  +R +    L+ 
Sbjct: 97  -----------PIKTEQRQPSMMTRMYIEQRDRLYNDNQVFA-KYNV--SRLQPYLKLRQ 142

Query: 355 QLQLAQKDIATW----------KSKLNSE----RKEVSKLQERIKSLKTSLSDRDHEVRD 400
            L   +   A            K+ +  +     K   K+  +I  L     +    V  
Sbjct: 143 ALLELRP--AKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETV-- 198

Query: 401 LKM-------------AVSDAEQKIFPEKAQIKAEILGLYEEKA---CL-----VEQLRE 439
           L+M             + SD    I      I+AE+  L + K    CL     V+  + 
Sbjct: 199 LEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKA 258

Query: 440 WE-----------SRGRSLEDELRIIKTQKTELEERIVG----EIEQLKAS--------- 475
           W            +R + + D L    T    L+   +     E++ L            
Sbjct: 259 WNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDL 318

Query: 476 --------------IAER----------------DKHIENLNRSLDSLKAE--RDRLESD 503
                         IAE                 DK    +  SL+ L+    R   +  
Sbjct: 319 PREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRL 378

Query: 504 VISRDDRMDQMEKHLQQLHMEHTELIKGAEDAHRMVGELRLKAKELEEEIEKQRVVILEG 563
            +            L  +  +  +      D   +V +L   +  L   +EKQ       
Sbjct: 379 SVFPPS-AHIPTILLSLIWFDVIK-----SDVMVVVNKLHKYS--L---VEKQP------ 421

Query: 564 AEEKREAIRQLCFSLEHYRSGYISLRKAVIGH 595
            +E   +I  +   L+       +L ++++ H
Sbjct: 422 -KESTISIPSIYLELKVKLENEYALHRSIVDH 452

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 50.2 bits (119), Expect = 2e-06
 Identities = 42/221 (19%), Positives = 70/221 (31%), Gaps = 56/221 (25%)

Query: 20  DSHISPK--NSKWLAENLEEMDQSVKRMLK--LIEEDGDSFAKKAEMYYQKRPELISHVE 75
            +HI     +  W      ++   V ++ K  L+E+            Y    EL   +E
Sbjct: 384 SAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYL---ELKVKLE 440

Query: 76  EFYRMYRSLAERYDHVTGELRKNIPSDLQSQGSGISDISSELPSMCPSPDQ--------- 126
             Y ++RS+ + Y         NIP    S      D+        P  DQ         
Sbjct: 441 NEYALHRSIVDHY---------NIPKTFDS-----DDLIP------PYLDQYFYSHIGHH 480

Query: 127 ----RPSRRKSGPRAAGFDF-FLGSAGSSAEFYPK-EGDESSSISDSESESDSSSVNNYS 180
                   R +  R    DF FL           K   D ++  +     +    +  Y 
Sbjct: 481 LKNIEHPERMTLFRMVFLDFRFLEQ---------KIRHDSTAWNASGSILNTLQQLKFYK 531

Query: 181 AFAGNGDDQGLQRKVNELETELREAKEKLHSQEE----RIA 217
            +  + D +  +R VN +   L + +E L   +     RIA
Sbjct: 532 PYICDNDPK-YERLVNAILDFLPKIEENLICSKYTDLLRIA 571

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 88.7 bits (220), Expect = 2e-18
 Identities = 56/330 (16%), Positives = 140/330 (42%), Gaps = 12/330 (3%)

Query: 230  EALFARIVGYEKKLRLANEKIHISNEEILRLKIELQKYNSSETNNYLQADFGSPAEINVN 289
            +    R    ++K     +++   + ++   K  LQ+   +ET  Y +A+          
Sbjct: 863  DEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLA--- 919

Query: 290  MWDAELQEGINGLETPSLDLDNKVKALMEELRITKEKLMLSEAEIASLKQEVESNRSEKI 349
                EL+E ++ +E    + + + + L  E +  +++++  E ++   +   +  + EK 
Sbjct: 920  AKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEK- 978

Query: 350  QTLQNQLQLAQKDIATWKSKLNSERKEVSKLQERIKSLKTSLSDRDHEVRDLKMAVSDAE 409
             T   +++  + DI   + + N   KE   L+ER+  L T+L++ + + ++L    +  E
Sbjct: 979  VTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHE 1038

Query: 410  QKIFPEKAQIKAEILGLYEEKACLVEQLREWESRGRSLEDELRIIKTQKTELEERI---V 466
              I    ++++  +    + +  L +  R+ E     L +++  ++ Q  EL+ ++    
Sbjct: 1039 SMI----SELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKE 1094

Query: 467  GEIEQLKASIAERDKHIENLNRSLDSLKAERDRLESDVISRDDRMDQMEKHLQQLHMEHT 526
             E++   A + +      N  + +  L++    L+ D+ S     ++ EK  + L  E  
Sbjct: 1095 EELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQKRDLSEELE 1154

Query: 527  ELIKGAEDAHRMVGEL-RLKAKELEEEIEK 555
             L    ED          L+  + +++ +K
Sbjct: 1155 ALKTELEDTLDTTATQQELRGSDYKDDDDK 1184

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 83.0 bits (205), Expect = 1e-16
 Identities = 52/273 (19%), Positives = 119/273 (43%), Gaps = 7/273 (2%)

Query: 308  DLDNKVKALMEELRITKEKLMLSEAEIASLKQEVESNRSEKIQTLQNQLQLAQKDIATWK 367
            +L+ K   L EE  + +EKL  +E E+ +  +E+    + K Q L+  L   +  I   +
Sbjct: 882  ELEQKHTQLCEEKNLLQEKLQ-AETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEE 940

Query: 368  SKLNSERKEVSKLQERIKSLKTSLSDRDHEVRDLKMAVSDAEQKIFPEKAQIKA---EIL 424
             +    + E  K+Q+++  L+  L + +   + L++    A+ KI   +  I     +  
Sbjct: 941  ERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNN 1000

Query: 425  GLYEEKACLVEQLREWESRGRSLEDELRIIKTQKTELEERIV---GEIEQLKASIAERDK 481
             L +E+  L E++ +  +     E++ + +   K + E  I      +++ + S  E +K
Sbjct: 1001 KLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEK 1060

Query: 482  HIENLNRSLDSLKAERDRLESDVISRDDRMDQMEKHLQQLHMEHTELIKGAEDAHRMVGE 541
                L      L  +   L++ +     ++ + E+ LQ       +      +A + + E
Sbjct: 1061 IKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRE 1120

Query: 542  LRLKAKELEEEIEKQRVVILEGAEEKREAIRQL 574
            L     +L+E++E ++    +  ++KR+   +L
Sbjct: 1121 LESHISDLQEDLESEKAARNKAEKQKRDLSEEL 1153

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 76.0 bits (187), Expect = 2e-14
 Identities = 59/338 (17%), Positives = 128/338 (37%), Gaps = 41/338 (12%)

Query: 189  QGLQRKVNELETELREAKEKLHSQEERIADESMKGAKNENPEALFARIVGYEKKLRLANE 248
            + L++K  +L  E    +EKL ++ E  A+        E    L A+    E+ L     
Sbjct: 881  KELEQKHTQLCEEKNLLQEKLQAETELYAE------AEEMRVRLAAKKQELEEILHEMEA 934

Query: 249  KIHISNEEILRLKIELQKYNSSETNNYLQADFGSPAEINVNMWDAELQEGINGLETPSLD 308
            +I    E   +L+ E +K         +Q                +L+E +   E     
Sbjct: 935  RIEEEEERSQQLQAEKKK---------MQQQM------------LDLEEQLEEEEAARQK 973

Query: 309  LDNKVKALMEELRITKEKLMLSEAEIASLKQEVESNRSEKIQTLQNQLQLAQKDIATWKS 368
            L  +      +++  ++ +++ E +   L +E +         L+ ++     ++A  + 
Sbjct: 974  LQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKL--------LEERVSDLTTNLAEEEE 1025

Query: 369  KLNSERKEVSKLQERIKSLKTSLSDRDHEVRDLKMAVSDAEQKI---FPEKAQIKAEILG 425
            K  +  K  +K +  I  L+  L   +   ++L+      E +      + A+++A+I  
Sbjct: 1026 KAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAE 1085

Query: 426  LYEEKACLVEQLREWESRGRSLEDELRIIKTQKTELEERIVG---EIEQLKASIAERDKH 482
            L  + A   E+L+   +R      +      +  ELE  I     ++E  KA+  + +K 
Sbjct: 1086 LKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQ 1145

Query: 483  IENLNRSLDSLKAERDRLESDVISRDDRMDQMEKHLQQ 520
              +L+  L++LK E +       ++ +      K    
Sbjct: 1146 KRDLSEELEALKTELEDTLDTTATQQELRGSDYKDDDD 1183

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 71.4 bits (175), Expect = 5e-13
 Identities = 39/234 (16%), Positives = 96/234 (41%), Gaps = 7/234 (2%)

Query: 344  NRSEKIQTLQNQLQLAQKDIATWKSKLNSERKEVSKLQERIKSLKTSLSDRDHEVRDLKM 403
             + E++Q  + + Q A+ ++   + K     +E + LQE++++     ++ +     L  
Sbjct: 861  AKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAA 920

Query: 404  AVSDAEQKIFPEKAQIKAEILGLYEEKACLVEQLREWESRGRSLEDELRIIKTQKTELEE 463
               + E+ +   +A+I+ E     E    L  + ++ + +   LE++L   +  + +L+ 
Sbjct: 921  KKQELEEILHEMEARIEEEE----ERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQL 976

Query: 464  ---RIVGEIEQLKASIAERDKHIENLNRSLDSLKAERDRLESDVISRDDRMDQMEKHLQQ 520
                  G+I++++  I   +     L +    L+     L +++   +++   + K   +
Sbjct: 977  EKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNK 1036

Query: 521  LHMEHTELIKGAEDAHRMVGELRLKAKELEEEIEKQRVVILEGAEEKREAIRQL 574
                 +EL    +   +   EL    ++LE E       I E   +  E   QL
Sbjct: 1037 HESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQL 1090

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 56.8 bits (137), Expect = 2e-08
 Identities = 45/243 (18%), Positives = 95/243 (39%), Gaps = 28/243 (11%)

Query: 348  KIQTLQNQLQLAQKDIATWKSKLNSER----KEVSKLQERIKSLKTSLSDRDHEVRDLKM 403
            K Q     +   Q ++ ++ +  +         +  L +  +  +  +  +D E++  K 
Sbjct: 813  KRQQQLESIFCIQYNVRSFMNVXHWPWMXLFFXIXPLLKVTRQEE-EMQAKDEELQRTKE 871

Query: 404  AVSDAEQKIFPEKAQIKAEILGLYEEKACLVEQLREWESRGRSLEDELRIIKTQKTELEE 463
                AE ++     +++ +   L EEK  L E+L+         E+    +  +K ELEE
Sbjct: 872  RQQKAEAEL----KELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQELEE 927

Query: 464  RIVGEIEQLKASIAERDKHIENLNRSLDSLKAERDRLESDVISRDDRMDQMEKHLQQLHM 523
             +     ++           E        L+AE+ +++  ++  ++++++ E   Q+L +
Sbjct: 928  ILHEMEARI-----------EEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQL 976

Query: 524  EHTEL---IKGAED----AHRMVGELRLKAKELEEEIEKQRVVILEGAEEKREAIRQLCF 576
            E       IK  ED          +L  + K LEE +       L   EEK + + +L  
Sbjct: 977  EKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTN-LAEEEEKAKNLTKLKN 1035

Query: 577  SLE 579
              E
Sbjct: 1036 KHE 1038

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 68.6 bits (168), Expect = 3e-12
 Identities = 39/248 (15%), Positives = 99/248 (39%), Gaps = 26/248 (10%)

Query: 312  KVKALMEELRITKEKLMLSEAEIASLKQEVESNRSEKIQTLQNQL--QLAQKDIATWKSK 369
             V+   + +    + +++ +     L +       + I  LQ      +A++++     K
Sbjct: 853  LVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAIVYLQCCYRRMMAKRELK----K 908

Query: 370  LNSERKEVSKLQERIKSLKTSLSDRDHEVRDLKMAVSDAEQKIFPEKAQIKAEILGLYEE 429
            L  E + V + ++    L+        ++  L+  + +  +    E   +  ++  L   
Sbjct: 909  LKIEARSVERYKKLHIGLEN-------KIMQLQRKIDEQNK----EYKSLLEKMNNLEIT 957

Query: 430  KACLVEQLREWESRGRSLEDELRIIKTQKTELEERIVGEIEQLKASIAERDKHIENLNRS 489
             +   E+LR    R R  E+E +    +   L+E    EI +L+  + +     + +   
Sbjct: 958  YSTETEKLRSDVERLRMSEEEAKNATNRVLSLQE----EIAKLRKELHQTQTEKKTIEEW 1013

Query: 490  LDSLKAERDRLESDVISRDDRMDQMEKHLQQLHMEHTELIKGAEDAHRMVGELRLKAKEL 549
             D  K E ++L S++    ++   ++   ++L+    +  K   +   M  +L  + K+L
Sbjct: 1014 ADKYKHETEQLVSEL---KEQNTLLKTEKEELNRRIHDQAKEITET--MEKKLVEETKQL 1068

Query: 550  EEEIEKQR 557
            E ++  +R
Sbjct: 1069 ELDLNDER 1076

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 53.6 bits (129), Expect = 2e-07
 Identities = 32/204 (15%), Positives = 72/204 (35%), Gaps = 3/204 (1%)

Query: 374  RKEVSKLQERIKSLKTSLSDRDHEVRDLKMAVSDAEQKIFPEKAQIKAEILGLYEEKACL 433
            RK    +++   +L+  L       +   M        I        A +      KA +
Sbjct: 832  RKRYQCMRDATIALQALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAIV 891

Query: 434  VEQLREWESRGRSLEDELRIIKTQKTELEERIVG---EIEQLKASIAERDKHIENLNRSL 490
              Q        +    +L+I        ++  +G   +I QL+  I E++K  ++L   +
Sbjct: 892  YLQCCYRRMMAKRELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKM 951

Query: 491  DSLKAERDRLESDVISRDDRMDQMEKHLQQLHMEHTELIKGAEDAHRMVGELRLKAKELE 550
            ++L+         + S  +R+   E+  +        L +      + + + + + K +E
Sbjct: 952  NNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIE 1011

Query: 551  EEIEKQRVVILEGAEEKREAIRQL 574
            E  +K +    +   E +E    L
Sbjct: 1012 EWADKYKHETEQLVSELKEQNTLL 1035

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 47.0 bits (112), Expect = 2e-05
 Identities = 33/241 (13%), Positives = 83/241 (34%), Gaps = 28/241 (11%)

Query: 347  EKIQTLQNQLQLAQKDIATWKSKLNSERKEVSKLQERIKSLKTSLSDRDHEVRDLKMAVS 406
            ++ Q +++     Q  +  +  +   +          I+        R H  R LK  V 
Sbjct: 833  KRYQCMRDATIALQALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAIV- 891

Query: 407  DAEQKIFPEKAQIKAEILGLYEEKACLVEQLREWESRGRSLEDELRIIKTQKTELEERI- 465
               Q  +      +              ++L+         +     ++ +  +L+ +I 
Sbjct: 892  -YLQCCYRRMMAKREL------------KKLKIEARSVERYKKLHIGLENKIMQLQRKID 938

Query: 466  ---------VGEIEQLKASIAERDKHIENLNRSLDSLKAERDRLESDVISRDDRMDQMEK 516
                     + ++  L+ + +   + + +    L   + E     + V+S  + + ++ K
Sbjct: 939  EQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRK 998

Query: 517  HLQQLHMEHTELIKGAEDAHR----MVGELRLKAKELEEEIEKQRVVILEGAEEKREAIR 572
             L Q   E   + + A+        +V EL+ +   L+ E E+    I + A+E  E + 
Sbjct: 999  ELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQAKEITETME 1058

Query: 573  Q 573
            +
Sbjct: 1059 K 1059

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 43.9 bits (104), Expect = 1e-04
 Identities = 24/197 (12%), Positives = 67/197 (34%), Gaps = 39/197 (19%)

Query: 191  LQRKVNELETELREAKEKLHSQEERIADESMKGAKNEN-PEALFARIVGYEKKLRLANEK 249
             ++    LE ++ + + K+  Q +       K    E        ++    ++LR++ E+
Sbjct: 919  YKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEE 978

Query: 250  IHISNEEILRLKIELQKYNSSETNNYLQADFGSPAEINVNMWDAELQEGINGLETPSLDL 309
               +   +L L+ E+                            A+L++ ++         
Sbjct: 979  AKNATNRVLSLQEEI----------------------------AKLRKELH-------QT 1003

Query: 310  DNKVKALMEELRITKEKLMLSEAEIASLKQEVESNRSEKIQTLQNQLQLAQKDIATWKSK 369
              + K + E     K +     +E+      +++ + E  + + +Q +   + +   + K
Sbjct: 1004 QTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQAKEITETM---EKK 1060

Query: 370  LNSERKEVSKLQERIKS 386
            L  E K++       + 
Sbjct: 1061 LVEETKQLELDLNDERL 1077

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C* Length = 3245

 Score = 48.7 bits (116), Expect = 6e-06
 Identities = 44/299 (14%), Positives = 95/299 (31%), Gaps = 36/299 (12%)

Query: 164  ISDSESESDSSSVNNYSAFAGNGDDQGLQRKVNELETELREAKEKLHSQEERIADESMKG 223
              + + E+                   L          +  +   +H          +K 
Sbjct: 1826 TRNLDLENPQYIAPPVFIQEAEIMGNNLMAIPPSHRDAVVSSLVYIHQTIGEANIRLLKR 1885

Query: 224  AKNEN---PEALFARIVGYEKKLRLANEKIHISNEEILRLKIELQKYNSSETNNYLQADF 280
               +N   P      I        L NEK     EE L L I L+K              
Sbjct: 1886 QGRQNYVTPRHYLDFINQVVL---LINEKRDQLEEEQLHLNIGLKKLRD----------- 1931

Query: 281  GSPAEINVNMWDAELQEGINGLETPSLDLDNKVKALMEELRIT----------KEKLMLS 330
                E  V      L +    L+  +   + K+K ++++ +            + +L + 
Sbjct: 1932 ---TEAQVKDLQVSLAQKNRELDVKNEQANQKLKQMVQDQQAAEIKQKDARELQVQLDVR 1988

Query: 331  EAEIASLKQEVESN--RSEKIQTLQNQLQLAQKDIATWKSKLNSERKEVSKLQERIKSLK 388
              EIA  K +  ++  ++E    L+ +++  +      K K +     ++ L++ I + K
Sbjct: 1989 NKEIAVQKVKAYADLEKAEPTGPLREEVEQLENAANELKLKQDEIVATITALEKSIATYK 2048

Query: 389  TSLSDRDHEVRDLKMAVSDAEQKIFPEKAQIKAEILGLYEEKACLVEQLREWESRGRSL 447
               +    E   +K   S  + K+     +  A +  L  E+    +Q   + ++  ++
Sbjct: 2049 EEYATLIRETEQIKTESSKVKNKV----DRSIALLDNLNSERGRWEQQSENFNTQMSTV 2103

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C* Length = 3245

 Score = 43.7 bits (103), Expect = 2e-04
 Identities = 30/192 (15%), Positives = 59/192 (30%), Gaps = 30/192 (15%)

Query: 353  QNQLQLAQKDIATWKSKLNSERKEVSKLQERIKSLKTSLSDRDHEVRDL----------- 401
            ++QL+  Q  +     KL     +V  LQ  +      L  ++ +               
Sbjct: 1912 RDQLEEEQLHLNIGLKKLRDTEAQVKDLQVSLAQKNRELDVKNEQANQKLKQMVQDQQAA 1971

Query: 402  --KMAVSDAEQKIFPEKAQIKAEILGLYEEKACLVEQLREWESRGRSLEDELRIIKTQKT 459
              K   +   Q     + +  A             E           LE+    +K ++ 
Sbjct: 1972 EIKQKDARELQVQLDVRNKEIAVQKVKAYADLEKAEPTGPLREEVEQLENAANELKLKQD 2031

Query: 460  ELEERI-----------------VGEIEQLKASIAERDKHIENLNRSLDSLKAERDRLES 502
            E+   I                 + E EQ+K   ++    ++     LD+L +ER R E 
Sbjct: 2032 EIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALLDNLNSERGRWEQ 2091

Query: 503  DVISRDDRMDQM 514
               + + +M  +
Sbjct: 2092 QSENFNTQMSTV 2103

>2xs1_A Programmed cell death 6-interacting protein; protein transport-viral protein complex, cell cycle; 2.30A {Homo sapiens} PDB: 2xs8_A 2oev_A 2r05_A 2r02_A 2r03_A 2oex_A 2ojq_A Length = 704

 Score = 46.9 bits (110), Expect = 2e-05
 Identities = 61/403 (15%), Positives = 137/403 (33%), Gaps = 12/403 (2%)

Query: 199 ETELREAKEKLHSQEERIADESMKGAKNENPEALFARIVGYEKKLRLANEKIHISNEEIL 258
           +    E   +L    E I   + +  +  N +    +I       +  N+ I+      L
Sbjct: 273 QYYFGEEIARLQHAAELIKTVASRYDEYVNVKDFSDKINRALAAAKKDNDFIYHDRVPDL 332

Query: 259 RLKIELQKYNSSETNNYLQADFGSPAEINVNMWDAELQEGINGLETPSLDLDNKVKALME 318
           +    + K    ++            ++   M    +Q+ +        DL N+  A M 
Sbjct: 333 KDLDPIGKATLVKSTPVNVPISQKFTDLFEKMVPVSVQQSLAAYNQRKADLVNRSIAQMR 392

Query: 319 ELRITKEKLMLSEAEIASLKQEVESNRSEKIQTLQNQLQLAQKDIATWKSKLNSERKEVS 378
           E       ++ S    A+++        + I T    +   Q  I T    +    + + 
Sbjct: 393 EATTLANGVLASLNLPAAIEDVSGDTVPQSILTKSRSVI-EQGGIQTVDQLIKELPELLQ 451

Query: 379 KLQERIKSLKTSLSDRDHEVRDLKMAVSDAEQKIFPEK--AQIKAEILGLYEEKACLVEQ 436
           + +E +      L + +    DL+    +  Q+    +    ++AE           V+ 
Sbjct: 452 RNREILDESLRLLDEEEATDNDLRAKFKERWQRTPSNELYKPLRAEGTNFRTVLDKAVQA 511

Query: 437 LREWESRGRSLEDELRIIKTQKTELEERIVGEIEQLKASIAERDKHIENLNRSLDSLKAE 496
             + +   +S  D + ++   + EL   I           +E    +++L  +LD +K E
Sbjct: 512 DGQVKECYQSHRDTIVLLCKPEPELNAAIPSANPAKTMQGSEVVNVLKSLLSNLDEVKKE 571

Query: 497 RDRLESDVISRDDRMDQ-------MEKHLQQLHMEHTELIKGAEDAHRMVGELRLKAKEL 549
           R+ LE+D+ S +  M          +  + +  +  TEL +        V E   K + L
Sbjct: 572 REGLENDLKSVNFDMTSKFLTALAQDGVINEEALSVTELDRVYGGLTTKVQESLKKQEGL 631

Query: 550 EEEIEK--QRVVILEGAEEKREAIRQLCFSLEHYRSGYISLRK 590
            + I+   Q    ++ +  +     ++  +L      ++ L  
Sbjct: 632 LKNIQVSHQEFSKMKQSNNEANLREEVLKNLATAYDNFVELVA 674

>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1 Length = 863

 Score = 45.7 bits (107), Expect = 4e-05
 Identities = 39/369 (10%), Positives = 105/369 (28%), Gaps = 25/369 (6%)

Query: 191 LQRKVNELETELREAKEKLHSQEERIADESMKGAKNENPEALFARIVGYEKKLRLANEKI 250
            ++K +  E+     +  L  ++   A  S   A  +  EA  + +  ++ ++       
Sbjct: 375 FRQKASIHESWTDGKEAMLQQKDYETATLSEIKALLKKHEAFESDLAAHQDRVEQIAAIA 434

Query: 251 HISNEEILRLKIELQKYNSSETNNYLQADFGSPAEINVNMWDAELQEGINGLETPSLDLD 310
              NE                  +Y  +   +     +      L              +
Sbjct: 435 QELNEL-----------------DYYDSPSVNARCQKICDQWDNLGALTQKRREALERTE 477

Query: 311 NKVKALMEELRITKEKLMLSEAEIASLKQEVESNRSEKIQTLQNQLQLAQKDIATWKSKL 370
             ++ + +      ++       +    ++++             L  A +         
Sbjct: 478 KLLETIDQLYLEYAKRAAPFNNWMEGAMEDLQDTFIVHTIEEIQGLTTAHEQFKATLPDA 537

Query: 371 NSERKEVSKLQERIKSLKTSLSDRDHEVRDLKMAVSDAEQKIFPEKAQIKAEILGLY-EE 429
           + ER+ +  +   +  +  +                      +    Q+         EE
Sbjct: 538 DKERQAILGIHNEVSKIVQTYHVNMAGTNPYTTITPQEINGKWEHVRQLVPRRDQALMEE 597

Query: 430 KACLVEQLREWESRGRSLEDELRIIKTQKTELEERIV---GEIEQLKASIAERDKHIENL 486
            A   +  R  +  G         I+T+  E+    +   G +E     + + +K I N 
Sbjct: 598 HARQQQNERLRKQFGAQANVIGPWIQTKMEEIGRISIEMHGTLEDQLNHLRQYEKSIVNY 657

Query: 487 NRSLDSLKAERDRLESDVISRDD----RMDQMEKHLQQLHMEHTELIKGAEDAHRMVGEL 542
              +D L+ +  +++  +I  +      M+ +    +QL       I   E+        
Sbjct: 658 KPKIDQLEGDHQQIQEALIFDNKHTNYTMEHIRVGWEQLLTTIARTINEVENQILTRDAK 717

Query: 543 RLKAKELEE 551
            +  +++ E
Sbjct: 718 GISQEQMNE 726

>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010

 Score = 45.0 bits (107), Expect = 6e-05
 Identities = 18/221 (8%), Positives = 72/221 (32%), Gaps = 13/221 (5%)

Query: 348  KIQTLQNQLQLAQKDIATWKSKLNSERKEVSKLQERIKSLKTSLSDRDHEVR--DLKMAV 405
            + +   + ++  Q  +   K    +E+    +    ++++  SL  +   ++        
Sbjct: 790  ESRDFGDSIESVQSFMNAHKEYKKTEKPPKGQEVSELEAIYNSLQTKLRLIKREPFVAPA 849

Query: 406  SDAEQKIFPEKAQIKAEILGLYEEKACLVEQLREWESRGRSLEDELRIIKTQKTELEERI 465
                 +I    + ++       E     +++ ++     +     L+ ++   T     +
Sbjct: 850  GLTPNEIDSTWSALEKAEQEHAEALRIELKRQKKIAVLLQKYNRILKKLENWATTKSVYL 909

Query: 466  VGEIEQLKASIAERDKHIENLNRSLDSLKAERDRLESDVISRDDRM-----DQMEKHLQQ 520
                 +   SI      ++NL       ++   +  SD++S   ++     + + +  ++
Sbjct: 910  --GSNETGDSITAVQAKLKNLEAFDGECQSLEGQSNSDLLSILAQLTELNYNGVPELTER 967

Query: 521  LHMEHTELIKGAEDAHRM----VGELRLKAKELEEEIEKQR 557
                  +   G + +       +     + +++E+      
Sbjct: 968  KDTFFAQQWTGVKSSAETYKNTLLAELERLQKIEDLHHHHH 1008

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori} Length = 256

 Score = 43.6 bits (102), Expect = 8e-05
 Identities = 24/173 (13%), Positives = 73/173 (42%), Gaps = 13/173 (7%)

Query: 347 EKIQTLQNQLQLAQKDIATWKSKLNSERKEVSKLQERIKSLKTSLSDRDHEVRDLKMAVS 406
             ++ L  ++    K+I + +  +  +RK++ K     ++   ++ + + E   LK+ VS
Sbjct: 5   THLKQLI-EISHLDKEIDSLEPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVS 63

Query: 407 DAEQKIFPEKAQIKA------------EILGLYEEKACLVEQLREWESRGRSLEDELRII 454
             EQ +    A+I +            E+  L  E+    E+  +      +L++E++  
Sbjct: 64  KNEQTLQDTNAKIASIQKKMSEIKSERELRSLNIEEDIAKERSNQANREIENLQNEIKRK 123

Query: 455 KTQKTELEERIVGEIEQLKASIAERDKHIENLNRSLDSLKAERDRLESDVISR 507
             ++ +L++ ++   +      +  +  ++N+  +   +  +++ L      +
Sbjct: 124 SEKQEDLKKEMLELEKLALELESLVENEVKNIKETQQIIFKKKEDLVEKTEPK 176

>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A* Length = 995

 Score = 42.0 bits (99), Expect = 6e-04
 Identities = 19/165 (11%), Positives = 55/165 (33%), Gaps = 10/165 (6%)

Query: 293 AELQEGINGLETPSLDLDNKVKALMEELRITKEKL---MLSEAEIASLKQEVESNRSEKI 349
            + +  +        ++D+   AL +  +   E L   +  + +IA L Q+      +K+
Sbjct: 832 IKREPFVAPAGLTPNEIDSTWSALEKAEQEHAEALRIELKRQKKIAVLLQKYN-RILKKL 890

Query: 350 QTLQNQLQLAQKDIATWKSKLNSERKEVSKLQERIKSLKTSLSDRDHEVRDLKMAVSDAE 409
           +       +      T    + + + ++  L+      ++     + ++  +   +++  
Sbjct: 891 ENWATTKSVYLGSNETGD-SITAVQAKLKNLEAFDGECQSLEGQSNSDLLSILAQLTELN 949

Query: 410 QKIFPEKAQ-----IKAEILGLYEEKACLVEQLREWESRGRSLED 449
               PE  +        +  G+          L     R + +ED
Sbjct: 950 YNGVPELTERKDTFFAQQWTGVKSSAETYKNTLLAELERLQKIED 994

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	604
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	99.5
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	99.41
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	99.07
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	99.04
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	97.95
2v71_A	189	Nuclear distribution protein NUDE-like 1; developm	97.44
2v71_A	189	Nuclear distribution protein NUDE-like 1; developm	97.38
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	96.93
2efr_A	155	General control protein GCN4 and tropomyosin 1 Al;	96.85
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	96.77
3o0z_A	168	RHO-associated protein kinase 1; coiled-coil, tran	96.64
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	96.56
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	96.51
3o0z_A	168	RHO-associated protein kinase 1; coiled-coil, tran	96.39
2fxo_A	129	Myosin heavy chain, cardiac muscle beta isoform; c	96.35
2ocy_A	154	RAB guanine nucleotide exchange factor SEC2; RAB,	96.01
2efr_A	155	General control protein GCN4 and tropomyosin 1 Al;	95.89
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	95.79
2fxo_A	129	Myosin heavy chain, cardiac muscle beta isoform; c	95.6
2ocy_A	154	RAB guanine nucleotide exchange factor SEC2; RAB,	95.35
2b9c_A	147	Striated-muscle alpha tropomyosin; alpha-helix, co	94.79
2v66_B	111	Nuclear distribution protein NUDE-like 1; structur	94.75
3u1c_A	101	Tropomyosin alpha-1 chain; anti-parallel coiled co	94.26
3u1c_A	101	Tropomyosin alpha-1 chain; anti-parallel coiled co	93.76
3u59_A	101	Tropomyosin beta chain; muscle contraction, actin,	93.47
3ol1_A	119	Vimentin; structural genomics, PSI-2, protein stru	93.24
2v66_B	111	Nuclear distribution protein NUDE-like 1; structur	92.06
4gkw_A	167	Spindle assembly abnormal protein 6; double helix,	91.95
2v4h_A	110	NF-kappa-B essential modulator; transcription, met	91.89
3s84_A	273	Apolipoprotein A-IV; four helix bundle, transport	91.81
2eqb_B	97	RAB guanine nucleotide exchange factor SEC2; coile	91.73
1ic2_A	81	Tropomyosin alpha chain, skeletal muscle; alpha-he	91.49
3tnu_B	129	Keratin, type II cytoskeletal 5; coiled-coil, stru	91.13
3ol1_A	119	Vimentin; structural genomics, PSI-2, protein stru	91.11
3mq7_A	121	Bone marrow stromal antigen 2; HIV, antiviral prot	90.34
2b9c_A	147	Striated-muscle alpha tropomyosin; alpha-helix, co	90.09
3swk_A	86	Vimentin; cytoskeleton, intermediate filament, alp	90.08
3swk_A	86	Vimentin; cytoskeleton, intermediate filament, alp	90.0
3hnw_A	138	Uncharacterized protein; coiled-coil, structural g	89.99
3u59_A	101	Tropomyosin beta chain; muscle contraction, actin,	89.47
3s4r_A	93	Vimentin; alpha-helix, cytoskeleton, intermediate	89.4
3tnu_A	131	Keratin, type I cytoskeletal 14; coiled-coil, stru	89.26
3q8t_A	96	Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90	87.56
3jsv_C	94	NF-kappa-B essential modulator; ubiquitin, coiled-	87.49
2eqb_B	97	RAB guanine nucleotide exchange factor SEC2; coile	86.39
1ic2_A	81	Tropomyosin alpha chain, skeletal muscle; alpha-he	85.58
3ghg_A	562	Fibrinogen alpha chain; triple-stranded coiled coi	84.09
3bas_A	89	Myosin heavy chain, striated muscle/general contro	83.89
1deq_A	390	Fibrinogen (alpha chain); coiled-coil, blood clott	83.29
3bas_A	89	Myosin heavy chain, striated muscle/general contro	83.24
3mq7_A	121	Bone marrow stromal antigen 2; HIV, antiviral prot	83.12
2e7s_A	135	RAB guanine nucleotide exchange factor SEC2; coile	83.1
3ghg_A	562	Fibrinogen alpha chain; triple-stranded coiled coi	82.1
1x79_B	112	RAB GTPase binding effector protein 1; rabaptin5,	81.68
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	81.66
3q8t_A	96	Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90	80.12

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A

Probab=99.50  E-value=1e-09  Score=106.85  Aligned_cols=87  Identities=11%  Similarity=0.160  Sum_probs=52.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 046695          467 GEIEQLKASIAERDKHIENLNRSLDSLKAERDRLESDVISRDDRMDQMEKHLQQLHMEHTELIKGAEDAHRMVGELRLKA  546 (604)
Q Consensus       467 ~eIs~lk~el~e~~~~Le~L~~ek~~Le~el~~Leqe~~s~r~~I~emE~~L~qLr~E~e~le~~l~elk~kl~ELK~rv  546 (604)
                      ..+..+...+..+...+..+......+...+..+...+......+..++..+..+...+..+...+..+...++.++.++
T Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (284)
T 1c1g_A          195 EEIKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEEL  274 (284)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33334444444445555555555556666666666666666666666666666666666666666666666666666666


Q ss_pred             HHHHHHH
Q 046695          547 KELEEEI  553 (604)
Q Consensus       547 ~eLeEev  553 (604)
                      .++...+
T Consensus       275 ~~~~~~L  281 (284)
T 1c1g_A          275 DHALNDM  281 (284)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            6665554

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A

Probab=99.41  E-value=6.9e-09  Score=101.01  Aligned_cols=36  Identities=6%  Similarity=-0.037  Sum_probs=17.1

Q ss_pred             HHHHHHHhhHHHHHHHHHhhhhcHHHHHHHHHHHhh
Q 046695          231 ALFARIVGYEKKLRLANEKIHISNEEILRLKIELQK  266 (604)
Q Consensus       231 ~l~~~~~~~~~el~~~n~~~~~~e~ei~~lk~ele~  266 (604)
                      .++.++.++..++..+...+..++.++..++..+..
T Consensus         3 ~~~~~~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~   38 (284)
T 1c1g_A            3 AIKKKMQMLKLDKENALDRADEAEADKKAAEDRSKQ   38 (284)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344555555555554444444444444444444433

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A

Probab=99.07  E-value=1e-10  Score=140.73  Aligned_cols=65  Identities=17%  Similarity=0.293  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046695          492 SLKAERDRLESDVISRDDRMDQMEKHLQQLHMEHTELIKGAEDAHRMVGELRLKAKELEEEIEKQ  556 (604)
Q Consensus       492 ~Le~el~~Leqe~~s~r~~I~emE~~L~qLr~E~e~le~~l~elk~kl~ELK~rv~eLeEeve~q  556 (604)
                      .++..+..+..++......+..++..+.+++.++..+...+..+...+.+++.++.++.++++..
T Consensus      1071 ~l~~el~el~~el~~le~~l~~le~el~~l~~~le~l~~~~~~le~~l~~Le~eie~L~eeLee~ 1135 (1184)
T 1i84_S         1071 DLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESE 1135 (1184)
T ss_dssp             -----------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333444444444444444444444444444444444444444555555555555554443

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A

Probab=99.04  E-value=1.3e-10  Score=139.97  Aligned_cols=64  Identities=19%  Similarity=0.266  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 046695          492 SLKAERDRLESDVISRDDRMDQMEKHLQQLHMEHTELIKGAEDAHRMVGELRLKAKELEEEIEK  555 (604)
Q Consensus       492 ~Le~el~~Leqe~~s~r~~I~emE~~L~qLr~E~e~le~~l~elk~kl~ELK~rv~eLeEeve~  555 (604)
                      .++.++..+..++......+..++..+..+..+...+...+..+...+.++..++..++.+++.
T Consensus      1064 ~le~el~~l~~el~el~~el~~le~~l~~le~el~~l~~~le~l~~~~~~le~~l~~Le~eie~ 1127 (1184)
T 1i84_S         1064 KLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISD 1127 (1184)
T ss_dssp             ----------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333333333334444444444444444444433333333333444444444444433

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}

Probab=97.95  E-value=0.0011  Score=66.69  Aligned_cols=15  Identities=27%  Similarity=0.284  Sum_probs=8.1

Q ss_pred             HHHHHHHHHHHHHHH
Q 046695          325 EKLMLSEAEIASLKQ  339 (604)
Q Consensus       325 eeL~~se~eI~~Lk~  339 (604)
                      -.|+..+.+|..+..
T Consensus        11 ~~LQ~lD~~i~~l~~   25 (256)
T 3na7_A           11 IEISHLDKEIDSLEP   25 (256)
T ss_dssp             HHHHHHHHHHHHTHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            445555555555544

>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}

Probab=97.44  E-value=0.029  Score=54.30  Aligned_cols=45  Identities=13%  Similarity=0.117  Sum_probs=12.2

Q ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 046695          477 AERDKHIENLNRSLDSLKAERDRLESDVISRDDRMDQMEKHLQQLHMEH  525 (604)
Q Consensus       477 ~e~~~~Le~L~~ek~~Le~el~~Leqe~~s~r~~I~emE~~L~qLr~E~  525 (604)
                      .+....+..+.....-|+.++.+    ...++..++.+.+.++.|+.+.
T Consensus       133 eD~e~kln~aiEr~alLE~El~E----Ke~l~~~~QRLkdE~rDLk~El  177 (189)
T 2v71_A          133 EDFEQRLNQAIERNAFLESELDE----KESLLVSVQRLKDEARDLRQEL  177 (189)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH----HHHHHCCC--------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333344444444432    2233444445555555555443

>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}

Probab=97.38  E-value=0.038  Score=53.52  Aligned_cols=82  Identities=18%  Similarity=0.163  Sum_probs=34.5

Q ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 046695          419 IKAEILGLYEEKACLVEQLREWESRGRSLEDELRIIKTQKTELEERIVGEIEQLKASIAERDKHIENLNRSLDSLKAERD  498 (604)
Q Consensus       419 l~~ei~~LqEk~~sLe~eL~ele~~i~sLe~eIkql~~E~~e~e~~le~eIs~lk~el~e~~~~Le~L~~ek~~Le~el~  498 (604)
                      +..++..+...+..+...++.++.....++...+....-+   + .++...+.....++-+...|.    +++.+...++
T Consensus        93 Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R~~~~Sl---e-D~e~kln~aiEr~alLE~El~----EKe~l~~~~Q  164 (189)
T 2v71_A           93 LEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIMSL---E-DFEQRLNQAIERNAFLESELD----EKESLLVSVQ  164 (189)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H-HHHHHHHHHHHHHHHHHHHHH----HHHHHHCCC-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhH---H-HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHH
Confidence            4445555555555555555555555555555555544444   3 344444444444444444443    2444444444


Q ss_pred             HHHHHHHhHH
Q 046695          499 RLESDVISRD  508 (604)
Q Consensus       499 ~Leqe~~s~r  508 (604)
                      .|+.++..++
T Consensus       165 RLkdE~rDLk  174 (189)
T 2v71_A          165 RLKDEARDLR  174 (189)
T ss_dssp             ----------
T ss_pred             HHHHHHHHHH
Confidence            4443333333

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=96.93  E-value=0.23  Score=65.30  Aligned_cols=18  Identities=17%  Similarity=0.152  Sum_probs=12.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHH
Q 046695           68 PELISHVEEFYRMYRSLAER   87 (604)
Q Consensus        68 p~l~~~v~~~~~~y~~laer   87 (604)
                      ..|+.+.  .|-++|-.++|
T Consensus      1536 ~~lvrLW--~HE~~RVF~DR 1553 (3245)
T 3vkg_A         1536 EGLVRLW--AHEALRLFQDR 1553 (3245)
T ss_dssp             THHHHHH--HHHHHHHHTTT
T ss_pred             HHHHHHH--HHHHHHHHHHH
Confidence            4566666  66777777776

>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A

Probab=96.85  E-value=0.32  Score=45.71  Aligned_cols=22  Identities=5%  Similarity=0.107  Sum_probs=8.0

Q ss_pred             HHHHHhhhhhHHHHHHHHHHHH
Q 046695          384 IKSLKTSLSDRDHEVRDLKMAV  405 (604)
Q Consensus       384 I~eLk~qlq~leeeI~eLk~~l  405 (604)
                      +..-..+....+..+.+|+..+
T Consensus        30 LEraEERae~aE~k~~eLEeeL   51 (155)
T 2efr_A           30 LERAEERAELSEGKSAELEEEL   51 (155)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333333333333333

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=96.77  E-value=0.12  Score=68.04  Aligned_cols=75  Identities=9%  Similarity=0.173  Sum_probs=37.3

Q ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHH
Q 046695          494 KAERDRLESDVISRDDRMDQMEKHLQQLHMEHTELIKGAEDAHRMVGELRLKAKELEEEIEKQRVVILEGAEEKR  568 (604)
Q Consensus       494 e~el~~Leqe~~s~r~~I~emE~~L~qLr~E~e~le~~l~elk~kl~ELK~rv~eLeEeve~qk~~i~~~aEeKr  568 (604)
                      ++++..++.++......+......|.++....+.+...+..+-.+...|+.++...+.++++-...|.+++.||-
T Consensus      2013 r~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL~~Ek~ 2087 (3245)
T 3vkg_A         2013 REEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALLDNLNSERG 2087 (3245)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccc
Confidence            333344444444444444444444444444444444444444444555555666666666666666666666663

>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}

Probab=96.64  E-value=0.29  Score=46.42  Aligned_cols=82  Identities=21%  Similarity=0.244  Sum_probs=47.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhchHHHhHHHHHHhH
Q 046695          347 EKIQTLQNQLQLAQKDIATWKSKLNSERKEVSKLQERIKSLKTSLSDRDHEVRDLKMAVSDAEQKIFPEKAQIKAEILGL  426 (604)
Q Consensus       347 ~kieqLq~eLe~~q~eie~i~~kLE~e~~ei~~LqeeI~eLk~qlq~leeeI~eLk~~l~d~eekls~eKa~l~~ei~~L  426 (604)
                      .+...|+.....++.++..++..|+.++.....-.+.+.++..++..+..++..++..+..+.           .+..++
T Consensus        55 ~~~~~L~~~k~~Leke~~~LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~~~k~~-----------~e~r~L  123 (168)
T 3o0z_A           55 ERNRILENSKSQTDKDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEKVE-----------GERKEA  123 (168)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHH
Confidence            345556666666666666666666666666666666666666666666666655555444322           334455


Q ss_pred             HHHHHHHHHHHHH
Q 046695          427 YEEKACLVEQLRE  439 (604)
Q Consensus       427 qEk~~sLe~eL~e  439 (604)
                      +++++.++++...
T Consensus       124 ~Ekl~~lEKe~a~  136 (168)
T 3o0z_A          124 QDMLNHSEKEKNN  136 (168)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHh
Confidence            5555555555443

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=96.56  E-value=0.048  Score=65.37  Aligned_cols=133  Identities=13%  Similarity=0.153  Sum_probs=45.9

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 046695          426 LYEEKACLVEQLREWESRGRSLEDELRIIKTQKTELEERIVGEIEQLKASIAERDKHIENLNRSLDSLKAERDRLESDVI  505 (604)
Q Consensus       426 LqEk~~sLe~eL~ele~~i~sLe~eIkql~~E~~e~e~~le~eIs~lk~el~e~~~~Le~L~~ek~~Le~el~~Leqe~~  505 (604)
                      +......|+.++.+++.++...+.+...+.+++..++..+..++..|+.++++++.    +..++..+++.+..|+.++.
T Consensus       919 l~~~~~~LE~kl~eLq~rL~~~e~~n~~L~~~~~~~~~~~~~e~~~L~~~l~~le~----~~~e~~~~~~~v~~L~~e~~  994 (1080)
T 2dfs_A          919 YKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRM----SEEEAKNATNRVLSLQEEIA  994 (1080)
T ss_dssp             --------------------------------CHHHHHHHHHHHHHHHHTHHHHHH----HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
Confidence            33445566666666666666666666666655543443455666666555555333    33444444555555555555


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 046695          506 SRDDRMDQMEKHLQQLHMEHTELIKGAEDAHRMVGELRLKAKELEEEIEKQRVVILEGAE  565 (604)
Q Consensus       506 s~r~~I~emE~~L~qLr~E~e~le~~l~elk~kl~ELK~rv~eLeEeve~qk~~i~~~aE  565 (604)
                      ..+..+....++...+...++++..   ++..+++.|+.....|+..++.....|.+.++
T Consensus       995 ~l~~~~~~~~ke~~~lee~~~~~~~---~L~~kv~~L~~e~~~L~qq~~~l~~~~~~~~~ 1051 (1080)
T 2dfs_A          995 KLRKELHQTQTEKKTIEEWADKYKH---ETEQLVSELKEQNTLLKTEKEELNRRIHDQAK 1051 (1080)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5555555555444444444333332   22333444444433344333333333333333

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=96.51  E-value=0.073  Score=63.78  Aligned_cols=37  Identities=14%  Similarity=0.234  Sum_probs=22.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 046695          465 IVGEIEQLKASIAERDKHIENLNRSLDSLKAERDRLE  501 (604)
Q Consensus       465 le~eIs~lk~el~e~~~~Le~L~~ek~~Le~el~~Le  501 (604)
                      ++..+..+..+++.++..+..+.+++..+++....+.
T Consensus       982 ~~~~v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~ 1018 (1080)
T 2dfs_A          982 ATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYK 1018 (1080)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4445555666666666666666666666666655554

>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}

Probab=96.39  E-value=0.7  Score=43.84  Aligned_cols=43  Identities=9%  Similarity=0.156  Sum_probs=21.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhH
Q 046695          465 IVGEIEQLKASIAERDKHIENLNRSLDSLKAERDRLESDVISR  507 (604)
Q Consensus       465 le~eIs~lk~el~e~~~~Le~L~~ek~~Le~el~~Leqe~~s~  507 (604)
                      +++.|..|..++......+..+..++-.+.+.+..|+.+..++
T Consensus        95 lq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe~a~~  137 (168)
T 3o0z_A           95 LQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKEKNNL  137 (168)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            4445555555555555555555555555555555554444433

>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A

Probab=96.35  E-value=0.31  Score=44.10  Aligned_cols=64  Identities=13%  Similarity=0.272  Sum_probs=42.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhh
Q 046695          348 KIQTLQNQLQLAQKDIATWKSKLNSERKEVSKLQERIKSLKTSLSDRDHEVRDLKMAVSDAEQK  411 (604)
Q Consensus       348 kieqLq~eLe~~q~eie~i~~kLE~e~~ei~~LqeeI~eLk~qlq~leeeI~eLk~~l~d~eek  411 (604)
                      ....|......+..+++.+..+|+.+........+....|......++..|.++...+.+.++.
T Consensus        35 ~r~ele~~~~~l~~Ek~~L~~qL~~E~~~l~e~EE~~~~L~~~k~eLe~~l~el~~rleeeee~   98 (129)
T 2fxo_A           35 RRKELEEKMVSLLQEKNDLQLQVQAEQDNLADAEERCDQLIKNKIQLEAKVKEMNKRLEDEEEM   98 (129)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444455555555566666666777777777777777777777777777777777777665543

>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=96.01  E-value=1  Score=42.19  Aligned_cols=93  Identities=15%  Similarity=0.203  Sum_probs=51.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 046695          468 EIEQLKASIAERDKHIENLNRSLDSLKAERDRLESDVISRDDRMDQMEKHLQQLHMEHTELIKGAEDAHRMVGELRLKAK  547 (604)
Q Consensus       468 eIs~lk~el~e~~~~Le~L~~ek~~Le~el~~Leqe~~s~r~~I~emE~~L~qLr~E~e~le~~l~elk~kl~ELK~rv~  547 (604)
                      ++..|...+.+-...-......+..+..++..|..-+++-=+.+      ...=+++...++.....++..+.+....+.
T Consensus        59 e~~~L~~~l~~E~~~R~~aE~~~~~ie~ElEeLTasLFeEAN~M------Va~ar~~~~~~e~r~~~L~~ql~e~~~~l~  132 (154)
T 2ocy_A           59 EVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNM------VADARKEKYAIEILNKRLTEQLREKDTLLD  132 (154)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333333333444555555555655555544432222      233355666666666667777777777777


Q ss_pred             HHHHHHHHHHHhhhhhhhh
Q 046695          548 ELEEEIEKQRVVILEGAEE  566 (604)
Q Consensus       548 eLeEeve~qk~~i~~~aEe  566 (604)
                      .+...+-.+|.++-.+..+
T Consensus       133 ~lq~ql~~LK~v~~~m~~e  151 (154)
T 2ocy_A          133 TLTLQLKNLKKVMHSLDNE  151 (154)
T ss_dssp             HHHHHHHHHHHTTSCCC--
T ss_pred             HHHHHHHHHHHHHHHhhhc
Confidence            8888887777777665443

>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A

Probab=95.89  E-value=1.2  Score=41.87  Aligned_cols=78  Identities=23%  Similarity=0.326  Sum_probs=34.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 046695          465 IVGEIEQLKASIAERDKHIENLNRSLDSLKAERDRLESDVISRDDRMDQMEKHLQQLHMEHTELIKGAEDAHRMVGELRL  544 (604)
Q Consensus       465 le~eIs~lk~el~e~~~~Le~L~~ek~~Le~el~~Leqe~~s~r~~I~emE~~L~qLr~E~e~le~~l~elk~kl~ELK~  544 (604)
                      ++.+|..|...+.+....-+...+....|+..++.|+.++...+.....+...|.              ..-..++.+..
T Consensus        75 yEeqIk~L~~kLKEAE~RAE~AERsv~kLEk~id~lEd~L~~~Kek~~~i~~eLd--------------~tl~el~~~~~  140 (155)
T 2efr_A           75 YEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEEMK--------------QLEDKVEELLS  140 (155)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHhccc
Confidence            4444444444444444444444444444444444444444444444444433333              33333444445


Q ss_pred             HHHHHHHHHHHH
Q 046695          545 KAKELEEEIEKQ  556 (604)
Q Consensus       545 rv~eLeEeve~q  556 (604)
                      ....|..+|-++
T Consensus       141 ~~~~~~~~~~~~  152 (155)
T 2efr_A          141 KNYHLENEVARL  152 (155)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             chHHHHHHHHHh
Confidence            555555555444

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=95.79  E-value=0.093  Score=57.85  Aligned_cols=24  Identities=8%  Similarity=0.286  Sum_probs=9.1

Q ss_pred             HHHHHHHhhhhhHHHHHHHHHHHH
Q 046695          382 ERIKSLKTSLSDRDHEVRDLKMAV  405 (604)
Q Consensus       382 eeI~eLk~qlq~leeeI~eLk~~l  405 (604)
                      ..+..++.++...+..+..+.+.+
T Consensus       463 ~~i~~l~~~~~~~~~~l~~~~~~i  486 (597)
T 3oja_B          463 AEVQQLTNEQIQQEQLLQGLHAEI  486 (597)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHh
Confidence            333333333333333333333333

>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A

Probab=95.60  E-value=1.2  Score=40.18  Aligned_cols=110  Identities=19%  Similarity=0.321  Sum_probs=52.5

Q ss_pred             HHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 046695          422 EILGLYEEKACLVEQLREWESRGRSLEDELRIIKTQKTELEERIVGEIEQLKASIAERDKHIENLNRSLDSLKAERDRLE  501 (604)
Q Consensus       422 ei~~LqEk~~sLe~eL~ele~~i~sLe~eIkql~~E~~e~e~~le~eIs~lk~el~e~~~~Le~L~~ek~~Le~el~~Le  501 (604)
                      ++....+.+..++..+.........++.....+..++   . .+..++..-...+.+....+..|.+.+..+...+..+ 
T Consensus        14 E~~~~~eel~~lke~l~k~e~~r~ele~~~~~l~~Ek---~-~L~~qL~~E~~~l~e~EE~~~~L~~~k~eLe~~l~el-   88 (129)
T 2fxo_A           14 EMASMKEEFTRLKEALEKSEARRKELEEKMVSLLQEK---N-DLQLQVQAEQDNLADAEERCDQLIKNKIQLEAKVKEM-   88 (129)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H-HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH-
Confidence            3334444444444444444444444444444444444   1 2222333333444444455555555555555544444 


Q ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 046695          502 SDVISRDDRMDQMEKHLQQLHMEHTELIKGAEDAHRMVGEL  542 (604)
Q Consensus       502 qe~~s~r~~I~emE~~L~qLr~E~e~le~~l~elk~kl~EL  542 (604)
                            ...+.+.++....|...+.+++.....++..+.++
T Consensus        89 ------~~rleeeee~~~~L~~~kkkle~e~~~Lk~~led~  123 (129)
T 2fxo_A           89 ------NKRLEDEEEMNAELTAKKRKLEDECSELKRDIDDL  123 (129)
T ss_dssp             ------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                  44555555666666666666665554444444443

>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=95.35  E-value=1.9  Score=40.45  Aligned_cols=39  Identities=26%  Similarity=0.204  Sum_probs=26.2

Q ss_pred             HHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh
Q 046695          420 KAEILGLYEEKACLVEQLREWESRGRSLEDELRIIKTQK  458 (604)
Q Consensus       420 ~~ei~~LqEk~~sLe~eL~ele~~i~sLe~eIkql~~E~  458 (604)
                      +.+-+.+..++..|+..+.+.+..+.+++.++..++.=+
T Consensus       107 r~~~~~~e~r~~~L~~ql~e~~~~l~~lq~ql~~LK~v~  145 (154)
T 2ocy_A          107 RKEKYAIEILNKRLTEQLREKDTLLDTLTLQLKNLKKVM  145 (154)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445566667777777777777777777777766665433

>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1

Probab=94.79  E-value=0.45  Score=44.22  Aligned_cols=113  Identities=10%  Similarity=0.130  Sum_probs=82.2

Q ss_pred             ccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 046695          301 GLETPSLDLDNKVKALMEELRITKEKLMLSEAEIASLKQEVESNRSEKIQTLQNQLQLAQKDIATWKSKLNSERKEVSKL  380 (604)
Q Consensus       301 eLE~el~el~~kl~~L~eEL~~~~eeL~~se~eI~~Lk~EL~sl~~~kieqLq~eLe~~q~eie~i~~kLE~e~~ei~~L  380 (604)
                      -++.++......+......|..+...-..++.-...|.+.-..- ..++..|..+|..+...-+....+.......+.-+
T Consensus         7 llEeeLer~eerl~~a~~kLeeaek~adE~eR~~k~lE~r~~~d-eEr~~~lE~qLkeak~~aeeadrKyeE~~RKl~~~   85 (147)
T 2b9c_A            7 LVEEELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKD-EEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVII   85 (147)
T ss_dssp             ----CCGGGGTTTTHHHHHHHHHHHHHHHHTHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc-HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence            34445555554455555555555556666666666776655554 67899999999999988889999999988888888


Q ss_pred             HHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhch
Q 046695          381 QERIKSLKTSLSDRDHEVRDLKMAVSDAEQKIFP  414 (604)
Q Consensus       381 qeeI~eLk~qlq~leeeI~eLk~~l~d~eekls~  414 (604)
                      ...+..........+..+.+|+..+....+++..
T Consensus        86 E~dLeraeeRae~aE~k~~eLEeeL~~~~~nlKs  119 (147)
T 2b9c_A           86 ESDLERAEERAELSEGKCAELEEELKTVTNNLKS  119 (147)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            8888888888888888888888888877766643

>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}

Probab=94.75  E-value=1.1  Score=39.73  Aligned_cols=92  Identities=22%  Similarity=0.244  Sum_probs=57.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhHHHH----HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhchHHHh---HH
Q 046695          348 KIQTLQNQLQLAQKDIATWKSKLNSERK----EVSKLQERIKSLKTSLSDRDHEVRDLKMAVSDAEQKIFPEKAQ---IK  420 (604)
Q Consensus       348 kieqLq~eLe~~q~eie~i~~kLE~e~~----ei~~LqeeI~eLk~qlq~leeeI~eLk~~l~d~eekls~eKa~---l~  420 (604)
                      +...|+.....+..+++.|+.|+.....    .+..|+.+|..+......+...|.+|+++-.+++..-+...+.   +-
T Consensus         4 ~~rdL~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t~~SLeD~E   83 (111)
T 2v66_B            4 RNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIVSLEDFE   83 (111)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHhhHHHHH
Confidence            4555666666666666777777666654    3666777777777777777777777777777666555443333   33


Q ss_pred             HHHHhHHHHHHHHHHHHHH
Q 046695          421 AEILGLYEEKACLVEQLRE  439 (604)
Q Consensus       421 ~ei~~LqEk~~sLe~eL~e  439 (604)
                      ..+...-++.+-|+.+|.+
T Consensus        84 ~k~n~aiErnalLE~El~E  102 (111)
T 2v66_B           84 QRLNQAIERNAFLESELDE  102 (111)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            3444444555555555553

>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A

Probab=94.26  E-value=1.9  Score=37.49  Aligned_cols=89  Identities=15%  Similarity=0.146  Sum_probs=42.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 046695          465 IVGEIEQLKASIAERDKHIENLNRSLDSLKAERDRLESDVISRDDRMDQMEKHLQQLHMEHTELIKGAEDAHRMVGELRL  544 (604)
Q Consensus       465 le~eIs~lk~el~e~~~~Le~L~~ek~~Le~el~~Leqe~~s~r~~I~emE~~L~qLr~E~e~le~~l~elk~kl~ELK~  544 (604)
                      +...|..++.+.+......+.+....-..+.....++.++.++...|..+++++.............+.........-..
T Consensus         7 IKkKm~~lk~e~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek~~~~aE~   86 (101)
T 3u1c_A            7 IKKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEENAAKAES   86 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444444444444444444444444444445555555555555555555554444444444444444444444444


Q ss_pred             HHHHHHHHH
Q 046695          545 KAKELEEEI  553 (604)
Q Consensus       545 rv~eLeEev  553 (604)
                      .|.+|..+|
T Consensus        87 ev~~L~Rri   95 (101)
T 3u1c_A           87 EVASLNRRI   95 (101)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            455554444

>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A

Probab=93.76  E-value=0.68  Score=40.26  Aligned_cols=68  Identities=9%  Similarity=0.143  Sum_probs=37.3

Q ss_pred             HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhhhH
Q 046695          326 KLMLSEAEIASLKQEVESNRSEKIQTLQNQLQLAQKDIATWKSKLNSERKEVSKLQERIKSLKTSLSDR  394 (604)
Q Consensus       326 eL~~se~eI~~Lk~EL~sl~~~kieqLq~eLe~~q~eie~i~~kLE~e~~ei~~LqeeI~eLk~qlq~l  394 (604)
                      .+...+.....+..++.++ ..++..++.+++.++..+.....+++............+..|+-+++-+
T Consensus        31 ~~k~~e~~~~~~E~Ei~sL-~kk~~~lE~eld~~ee~L~ea~~kLee~ek~~~~aE~ev~~L~Rriqll   98 (101)
T 3u1c_A           31 DKKAAEERSKQLEDDIVQL-EKQLRVTEDSRDQVLEELHKSEDSLLFAEENAAKAESEVASLNRRIQLV   98 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333444444444444444 5566666777776666666666666666655555555555555444433

>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}

Probab=93.47  E-value=3.2  Score=35.88  Aligned_cols=87  Identities=13%  Similarity=0.163  Sum_probs=36.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 046695          467 GEIEQLKASIAERDKHIENLNRSLDSLKAERDRLESDVISRDDRMDQMEKHLQQLHMEHTELIKGAEDAHRMVGELRLKA  546 (604)
Q Consensus       467 ~eIs~lk~el~e~~~~Le~L~~ek~~Le~el~~Leqe~~s~r~~I~emE~~L~qLr~E~e~le~~l~elk~kl~ELK~rv  546 (604)
                      ..|..++.+.+......+.+..+.-..+.....++.++.+....|..+++++.............+........+-...|
T Consensus         9 kKm~~lk~e~e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ek~~~~AE~ev   88 (101)
T 3u59_A            9 KKMQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAEKKATDAEAEV   88 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444444444444444444444444444444444444444444444444444444433333334444444444444


Q ss_pred             HHHHHHH
Q 046695          547 KELEEEI  553 (604)
Q Consensus       547 ~eLeEev  553 (604)
                      .+|..+|
T Consensus        89 asLnRri   95 (101)
T 3u59_A           89 ASLNRRI   95 (101)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            4444443

>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}

Probab=92.06  E-value=5.5  Score=35.33  Aligned_cols=25  Identities=20%  Similarity=0.190  Sum_probs=12.3

Q ss_pred             HHHHHhhhhhHHHHHHHHHHHHHHH
Q 046695          384 IKSLKTSLSDRDHEVRDLKMAVSDA  408 (604)
Q Consensus       384 I~eLk~qlq~leeeI~eLk~~l~d~  408 (604)
                      ...|+.....+..++..++..+...
T Consensus         5 ~rdL~~~~~~L~~E~e~~k~K~~~~   29 (111)
T 2v66_B            5 NRDLQADNQRLKYEVEALKEKLEHQ   29 (111)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444444555555555555543

>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}

Probab=91.95  E-value=7.1  Score=35.52  Aligned_cols=57  Identities=18%  Similarity=0.274  Sum_probs=32.3

Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 046695          496 ERDRLESDVISRDDRMDQMEKHLQQLHMEHTELIKGAEDAHRMVGELRLKAKELEEE  552 (604)
Q Consensus       496 el~~Leqe~~s~r~~I~emE~~L~qLr~E~e~le~~l~elk~kl~ELK~rv~eLeEe  552 (604)
                      ++.+|+.++.+++..+..+-.-|.-|+++.+.---...+.-+.+..|+..-.++.++
T Consensus        99 KLrELEADLKEKDsMVe~LT~TiG~LrKELEdEklK~~E~MdSFE~LkvENE~vker  155 (167)
T 4gkw_A           99 KLGELEADLKEKDSMVESLTETIGILRKELENEKLKAAENMDSFEKLSMENENLKEK  155 (167)
T ss_dssp             HTHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHH
Confidence            455677777777777777777776666665544433334444444444444444443

>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}

Probab=91.89  E-value=1.6  Score=38.54  Aligned_cols=85  Identities=22%  Similarity=0.377  Sum_probs=59.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhh
Q 046695          312 KVKALMEELRITKEKLMLSEAEIASLKQEVESNRSEKIQTLQNQLQLAQKDIATWKSKLNSERKEVSKLQERIKSLKTSL  391 (604)
Q Consensus       312 kl~~L~eEL~~~~eeL~~se~eI~~Lk~EL~sl~~~kieqLq~eLe~~q~eie~i~~kLE~e~~ei~~LqeeI~eLk~ql  391 (604)
                      +|..|+..|..+.+.|..-..+|..++.++...     ....+.+..+...++-|...+..++.....++.++..|..++
T Consensus        25 ei~~L~~~L~~AEeaL~~Kq~~idelk~ei~q~-----~~~lE~I~vLkaQv~IY~~DF~aERadREkl~~eKe~L~~ql   99 (110)
T 2v4h_A           25 QLEDLRQQLQQAEEALVAKQELIDKLKEEAEQH-----KIVMETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQL   99 (110)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHccchhhHHHHHhHHHHHHHHH
Confidence            444556666666566666666666666654432     222245667777778889999999999999999999999998


Q ss_pred             hhHHHHHHHH
Q 046695          392 SDRDHEVRDL  401 (604)
Q Consensus       392 q~leeeI~eL  401 (604)
                      ..++.++..|
T Consensus       100 ~~Lq~q~~~l  109 (110)
T 2v4h_A          100 EQLQREFNKL  109 (110)
T ss_dssp             HHHHHHHTTC
T ss_pred             HHHHHHHHhc
Confidence            8887776544

>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}

Probab=91.81  E-value=12  Score=37.86  Aligned_cols=17  Identities=24%  Similarity=0.395  Sum_probs=10.0

Q ss_pred             HHHHHHHHhhhhhhhhh
Q 046695          199 ETELREAKEKLHSQEER  215 (604)
Q Consensus       199 e~e~~~~~~k~~~~~e~  215 (604)
                      ..++.+++.+|.+..+.
T Consensus        21 ~~~~eel~~~L~P~~~~   37 (273)
T 3s84_A           21 GKELEELRARLLPHANE   37 (273)
T ss_dssp             HHHHHHHHHHHGGGHHH
T ss_pred             HHHHHHHHHhcCCcHHH
Confidence            34556666777666444

>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=91.73  E-value=3.3  Score=35.85  Aligned_cols=70  Identities=20%  Similarity=0.243  Sum_probs=41.0

Q ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 046695          493 LKAERDRLESDVISRDDRMDQMEKHLQQLHMEHTELIK-GAEDAHRMVGELRLKAKELEEEIEKQRVVILE  562 (604)
Q Consensus       493 Le~el~~Leqe~~s~r~~I~emE~~L~qLr~E~e~le~-~l~elk~kl~ELK~rv~eLeEeve~qk~~i~~  562 (604)
                      +..++..|..++..-+..-...+....++..+++.|++ .+.++-.-|+.=+..-..++.+++.++.+|-|
T Consensus        24 ~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTasLFeEAN~MVa~ar~e~~~~e~kn~~L~~qL~d   94 (97)
T 2eqb_B           24 RDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNMVADARKEKYAIEILNKRLTEQLRE   94 (97)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            44444445555555555555555666666666666655 44556666666666666666666666666544

>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1

Probab=91.49  E-value=1.6  Score=36.32  Aligned_cols=68  Identities=16%  Similarity=0.266  Sum_probs=46.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhc
Q 046695          346 SEKIQTLQNQLQLAQKDIATWKSKLNSERKEVSKLQERIKSLKTSLSDRDHEVRDLKMAVSDAEQKIF  413 (604)
Q Consensus       346 ~~kieqLq~eLe~~q~eie~i~~kLE~e~~ei~~LqeeI~eLk~qlq~leeeI~eLk~~l~d~eekls  413 (604)
                      ..++..|+.+.+.+..+.+....++.....+...+...|..|+.+++.++.++..++..+..+..++.
T Consensus         5 kkKm~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLe   72 (81)
T 1ic2_A            5 KKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQEKLE   72 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34666677777777777777777777777777777777777777777777777777666666665553

>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}

Probab=91.13  E-value=3.9  Score=36.73  Aligned_cols=31  Identities=23%  Similarity=0.482  Sum_probs=12.1

Q ss_pred             HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 046695          379 KLQERIKSLKTSLSDRDHEVRDLKMAVSDAE  409 (604)
Q Consensus       379 ~LqeeI~eLk~qlq~leeeI~eLk~~l~d~e  409 (604)
                      .+...|..|..+++.+......|+..+.+++
T Consensus        40 elrr~iq~L~~el~~l~~~~~~LE~~l~e~e   70 (129)
T 3tnu_B           40 EMNRMIQRLRAEIDNVKKQCANLQNAIADAE   70 (129)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            3333333333333333333333444444433

>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A

Probab=90.34  E-value=3.6  Score=36.70  Aligned_cols=78  Identities=23%  Similarity=0.250  Sum_probs=51.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhhh
Q 046695          314 KALMEELRITKEKLMLSEAEIASLKQEVESNRSEKIQTLQNQLQLAQKDIATWKSKLNSERKEVSKLQERIKSLKTSLSD  393 (604)
Q Consensus       314 ~~L~eEL~~~~eeL~~se~eI~~Lk~EL~sl~~~kieqLq~eLe~~q~eie~i~~kLE~e~~ei~~LqeeI~eLk~qlq~  393 (604)
                      --|+.+|..+.+.|...+.+-+.-+..+..| ...++......                 .+.+.+|+.+|+.|+.++++
T Consensus        28 ~lLq~qLTqAQe~l~~~eaQAaTCNqTV~tL-~~SL~~ekaq~-----------------q~~vqeLqgEI~~Lnq~Lq~   89 (121)
T 3mq7_A           28 HLLQQELTEAQKGFQDVEAQAATANHTVMAL-MASLDAEKAQG-----------------QKKVEELEGEITTLNHKLQD   89 (121)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHH
Confidence            3467788888888888888888888776666 22222211111                 23467777778888887777


Q ss_pred             HHHHHHHHHHHHHHHH
Q 046695          394 RDHEVRDLKMAVSDAE  409 (604)
Q Consensus       394 leeeI~eLk~~l~d~e  409 (604)
                      ...+|..|......+.
T Consensus        90 a~ae~erlr~~~~~~~  105 (121)
T 3mq7_A           90 ASAEVERLRRENQVLS  105 (121)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhchhhh
Confidence            7777777766555443

>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1

Probab=90.09  E-value=4  Score=37.84  Aligned_cols=49  Identities=18%  Similarity=0.340  Sum_probs=18.4

Q ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 046695          471 QLKASIAERDKHIENLNRSLDSLKAERDRLESDVISRDDRMDQMEKHLQ  519 (604)
Q Consensus       471 ~lk~el~e~~~~Le~L~~ek~~Le~el~~Leqe~~s~r~~I~emE~~L~  519 (604)
                      ..+.-..+....+..+......++..+...+.........+.+++..|+
T Consensus        63 eak~~aeeadrKyeE~~RKl~~~E~dLeraeeRae~aE~k~~eLEeeL~  111 (147)
T 2b9c_A           63 EAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEELK  111 (147)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333333333333333333333333333333333333333333

>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}

Probab=90.08  E-value=2.9  Score=35.26  Aligned_cols=58  Identities=16%  Similarity=0.220  Sum_probs=40.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Q 046695          348 KIQTLQNQLQLAQKDIATWKSKLNSERKEVSKLQERIKSLKTSLSDRDHEVRDLKMAV  405 (604)
Q Consensus       348 kieqLq~eLe~~q~eie~i~~kLE~e~~ei~~LqeeI~eLk~qlq~leeeI~eLk~~l  405 (604)
                      .--.+.-++.+++..++.++.+++.+......++..+..++..+.++-=.-.+|+..+
T Consensus        15 e~~~l~~e~dn~~~~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD~a~l~r~dLE~kv   72 (86)
T 3swk_A           15 DKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKV   72 (86)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            3445666778888888888999998888888888888888887765543333333333

>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}

Probab=90.00  E-value=4.8  Score=33.95  Aligned_cols=17  Identities=35%  Similarity=0.382  Sum_probs=9.1

Q ss_pred             HHHHHHHHHHHHHHHHH
Q 046695          538 MVGELRLKAKELEEEIE  554 (604)
Q Consensus       538 kl~ELK~rv~eLeEeve  554 (604)
                      .-.+|..++.+|.+++.
T Consensus        64 ~r~dLE~kvesL~eEl~   80 (86)
T 3swk_A           64 ARLDLERKVESLQEEIA   80 (86)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            34455555555555554

>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}

Probab=89.99  E-value=5.5  Score=36.46  Aligned_cols=16  Identities=6%  Similarity=0.113  Sum_probs=7.0

Q ss_pred             HhhhhccCCc--chhhhH
Q 046695          296 QEGINGLETP--SLDLDN  311 (604)
Q Consensus       296 q~~I~eLE~e--l~el~~  311 (604)
                      ...+.++...  ...+..
T Consensus        38 d~km~ei~~~~~~~~l~~   55 (138)
T 3hnw_A           38 NNKITEFNKEESYRRMSA   55 (138)
T ss_dssp             HHHHHHHTTCHHHHTSCH
T ss_pred             HHHHHHHHhccCCCCCCH
Confidence            4444445533  444443

>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}

Probab=89.47  E-value=9.6  Score=32.80  Aligned_cols=31  Identities=10%  Similarity=0.025  Sum_probs=14.5

Q ss_pred             HHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh
Q 046695          428 EEKACLVEQLREWESRGRSLEDELRIIKTQK  458 (604)
Q Consensus       428 Ek~~sLe~eL~ele~~i~sLe~eIkql~~E~  458 (604)
                      .++.+|+.+...+..+...++.+++......
T Consensus         9 kKm~~lk~e~e~a~d~ae~~e~~~k~~e~~~   39 (101)
T 3u59_A            9 KKMQMLKLDKENAIDRAEQAEADKKQAEDRC   39 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444555555544444444444444444433

>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A

Probab=89.40  E-value=5.1  Score=34.29  Aligned_cols=77  Identities=19%  Similarity=0.285  Sum_probs=34.6

Q ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 046695          419 IKAEILGLYEEKACLVEQLREWESRGRSLEDELRIIKTQKTELEERIVGEIEQLKASIAERDKHIENLNRSLDSLKAERD  498 (604)
Q Consensus       419 l~~ei~~LqEk~~sLe~eL~ele~~i~sLe~eIkql~~E~~e~e~~le~eIs~lk~el~e~~~~Le~L~~ek~~Le~el~  498 (604)
                      ||..|+.+-++|-.|+++-.       .|+.+|..+....   . .  .--.-....|..+...|..+..++..+.-+++
T Consensus        14 LNdRlAsyIdKVR~LEqqN~-------~Le~~i~~l~~~~---~-~--~~~~~ye~~i~~Lr~~i~~~~~ek~~l~~e~d   80 (93)
T 3s4r_A           14 LNDRFANLIDKVRFLEQQNK-------ILLAELEQLKGQG---K-S--RLGDLYEEEMRELRRQVDQLTNDKARVEVERD   80 (93)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH---H-H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHhhcc---C-C--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44555555555555554444       4455554444322   1 0  00111234444445555555555555555555


Q ss_pred             HHHHHHHhHH
Q 046695          499 RLESDVISRD  508 (604)
Q Consensus       499 ~Leqe~~s~r  508 (604)
                      .+..++...+
T Consensus        81 nl~~~~~~~k   90 (93)
T 3s4r_A           81 NLAEDIMRLR   90 (93)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            5444444433

>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}

Probab=89.26  E-value=5  Score=36.14  Aligned_cols=17  Identities=24%  Similarity=0.258  Sum_probs=7.5

Q ss_pred             HHHhHHHHHHHHHHHHH
Q 046695          422 EILGLYEEKACLVEQLR  438 (604)
Q Consensus       422 ei~~LqEk~~sLe~eL~  438 (604)
                      ++..++..+..++.+|.
T Consensus        78 ~l~~~q~~i~~lE~eL~   94 (131)
T 3tnu_A           78 QLAQIQEMIGSVEEQLA   94 (131)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            33344444444444444

>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}

Probab=87.56  E-value=13  Score=32.00  Aligned_cols=77  Identities=14%  Similarity=0.152  Sum_probs=38.6

Q ss_pred             hhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH---HhhhchHHHhHHHHHHhHHHHHHHHHHHHHHHHHhhh
Q 046695          369 KLNSERKEVSKLQERIKSLKTSLSDRDHEVRDLKMAVSDA---EQKIFPEKAQIKAEILGLYEEKACLVEQLREWESRGR  445 (604)
Q Consensus       369 kLE~e~~ei~~LqeeI~eLk~qlq~leeeI~eLk~~l~d~---eekls~eKa~l~~ei~~LqEk~~sLe~eL~ele~~i~  445 (604)
                      .|.....+-+.|..+|..+......+..+|..++.....+   +.+|=-....+..+...+++...+++.++.+-..++.
T Consensus        12 eL~~l~~eE~~L~~eL~~lEke~~~l~~el~~le~E~~~L~~eE~~~w~eyn~~~~ql~e~~dE~~Sl~~q~~~~~~qLd   91 (96)
T 3q8t_A           12 ELKELALEEERLIQELEDVEKNRKVVAENLEKVQAEAERLDQEEAQYQREYSEFKRQQLELDDELKSVENQMRYAQMQLD   91 (96)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333344445555556666666666666666655443322   2222222233445555555666666666655554444

>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B

Probab=87.49  E-value=3.4  Score=35.57  Aligned_cols=86  Identities=23%  Similarity=0.378  Sum_probs=58.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhh
Q 046695          313 VKALMEELRITKEKLMLSEAEIASLKQEVESNRSEKIQTLQNQLQLAQKDIATWKSKLNSERKEVSKLQERIKSLKTSLS  392 (604)
Q Consensus       313 l~~L~eEL~~~~eeL~~se~eI~~Lk~EL~sl~~~kieqLq~eLe~~q~eie~i~~kLE~e~~ei~~LqeeI~eLk~qlq  392 (604)
                      +..|...|..+.+.|..-...|..|+.+..     ..+.....+..+...+.-|...+..+++....+..+...|..++.
T Consensus         4 ~~~L~~~L~~aEeaL~~kq~~id~lke~~~-----q~~~~~E~i~vLk~Qv~IY~~DF~aERadREkl~~eKe~L~~ql~   78 (94)
T 3jsv_C            4 LEDLRQQLQQAEEALVAKQELIDKLKEEAE-----QHKIVMETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLE   78 (94)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence            344555555555566666666666666533     233344667777777888999999999999999988888888888


Q ss_pred             hHHHHHHHHHH
Q 046695          393 DRDHEVRDLKM  403 (604)
Q Consensus       393 ~leeeI~eLk~  403 (604)
                      .+..++..|+.
T Consensus        79 ~lq~q~~~L~~   89 (94)
T 3jsv_C           79 QLQREFNKLKV   89 (94)
T ss_dssp             HHHHTTC----
T ss_pred             HHHHHHHHHHH
Confidence            88777776654

>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=86.39  E-value=11  Score=32.62  Aligned_cols=32  Identities=16%  Similarity=0.283  Sum_probs=14.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 046695          348 KIQTLQNQLQLAQKDIATWKSKLNSERKEVSK  379 (604)
Q Consensus       348 kieqLq~eLe~~q~eie~i~~kLE~e~~ei~~  379 (604)
                      .+.+++.++.....++..+...+..++.....
T Consensus        13 ~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~   44 (97)
T 2eqb_B           13 DYNTLKRELSDRDDEVKRLREDIAKENELRTK   44 (97)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence            34444444444444444444444444443333

>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1

Probab=85.58  E-value=9.7  Score=31.46  Aligned_cols=42  Identities=17%  Similarity=0.233  Sum_probs=15.9

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 046695          498 DRLESDVISRDDRMDQMEKHLQQLHMEHTELIKGAEDAHRMV  539 (604)
Q Consensus       498 ~~Leqe~~s~r~~I~emE~~L~qLr~E~e~le~~l~elk~kl  539 (604)
                      ..+...+..........+..+..|++.+..++..++.+...+
T Consensus        23 ~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l   64 (81)
T 1ic2_A           23 EQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESL   64 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333333333333334444444333333333333333

>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*

Probab=84.09  E-value=17  Score=40.10  Aligned_cols=12  Identities=25%  Similarity=0.321  Sum_probs=0.0

Q ss_pred             HHHHHhhhHHHH
Q 046695          570 AIRQLCFSLEHY  581 (604)
Q Consensus       570 AIrQlcfslehy  581 (604)
                      -|+|+-|.||.-
T Consensus       234 ei~Qm~mvLE~~  245 (562)
T 3ghg_A          234 DMPQMRMELERP  245 (562)
T ss_dssp             ------------
T ss_pred             hhhcEEEEEEec
Confidence            478888888864

>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A

Probab=83.89  E-value=13  Score=31.34  Aligned_cols=28  Identities=21%  Similarity=0.241  Sum_probs=12.9

Q ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 046695          476 IAERDKHIENLNRSLDSLKAERDRLESD  503 (604)
Q Consensus       476 l~e~~~~Le~L~~ek~~Le~el~~Leqe  503 (604)
                      +++.......|.+.+..++..+..+...
T Consensus        58 l~eaEe~~~~L~~~K~eLE~~l~el~~r   85 (89)
T 3bas_A           58 MKQLEDKVEELLSKNYHLENEVARLKKL   85 (89)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444444444444444444444444433

>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A

Probab=83.24  E-value=16  Score=30.81  Aligned_cols=16  Identities=25%  Similarity=0.447  Sum_probs=6.6

Q ss_pred             HHHHHHHHHHHHHHHH
Q 046695          511 MDQMEKHLQQLHMEHT  526 (604)
Q Consensus       511 I~emE~~L~qLr~E~e  526 (604)
                      +.+.+.....|...+.
T Consensus        58 l~eaEe~~~~L~~~K~   73 (89)
T 3bas_A           58 MKQLEDKVEELLSKNY   73 (89)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHhHHHHHHHHHHHHH
Confidence            4444444444444333

>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A

Probab=83.12  E-value=12  Score=33.35  Aligned_cols=62  Identities=21%  Similarity=0.308  Sum_probs=34.5

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhh----hhhHHHHHHHHHHHHHHHHhhh
Q 046695          351 TLQNQLQLAQKDIATWKSKLNSERKEVSKLQERIKSLKTS----LSDRDHEVRDLKMAVSDAEQKI  412 (604)
Q Consensus       351 qLq~eLe~~q~eie~i~~kLE~e~~ei~~LqeeI~eLk~q----lq~leeeI~eLk~~l~d~eekl  412 (604)
                      -|+.+|..++.-+...+.+-..=..-+..|...|...+++    +++++.+|..|++.+.++..++
T Consensus        29 lLq~qLTqAQe~l~~~eaQAaTCNqTV~tL~~SL~~ekaq~q~~vqeLqgEI~~Lnq~Lq~a~ae~   94 (121)
T 3mq7_A           29 LLQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQGQKKVEELEGEITTLNHKLQDASAEV   94 (121)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3555556665555555555455555566666666666655    5555555555555555544443

>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=83.10  E-value=4.6  Score=36.95  Aligned_cols=36  Identities=28%  Similarity=0.194  Sum_probs=16.8

Q ss_pred             HHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 046695          421 AEILGLYEEKACLVEQLREWESRGRSLEDELRIIKT  456 (604)
Q Consensus       421 ~ei~~LqEk~~sLe~eL~ele~~i~sLe~eIkql~~  456 (604)
                      .+-+.+..++..|+..+.+.+..+.+++.++..++.
T Consensus        96 ~~~~~~e~r~~~L~~ql~e~e~ll~~lq~QL~~LK~  131 (135)
T 2e7s_A           96 MEKYAIEILNKRLTEQLREKDMLLDTLTLQLKNLKK  131 (135)
T ss_dssp             HHHHHHHHHHHHHHHTTTHHHHCC------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455666677777777777777777777766666543

>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*

Probab=82.10  E-value=16  Score=40.15  Aligned_cols=13  Identities=23%  Similarity=0.181  Sum_probs=5.9

Q ss_pred             HHHHHHHHHHHHh
Q 046695          330 SEAEIASLKQEVE  342 (604)
Q Consensus       330 se~eI~~Lk~EL~  342 (604)
                      +...|+.|++.|+
T Consensus        62 ltkrINELKnqLE   74 (562)
T 3ghg_A           62 FTNRINKLKNSLF   74 (562)
T ss_dssp             HHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHH
Confidence            4444444444443

>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2

Probab=81.68  E-value=19  Score=31.96  Aligned_cols=52  Identities=12%  Similarity=0.173  Sum_probs=19.0

Q ss_pred             hhHHHHHHHHHHHHHHHHhhhchHHHhHHHHHHhHHHHHHHHHHHHHHHHHh
Q 046695          392 SDRDHEVRDLKMAVSDAEQKIFPEKAQIKAEILGLYEEKACLVEQLREWESR  443 (604)
Q Consensus       392 q~leeeI~eLk~~l~d~eekls~eKa~l~~ei~~LqEk~~sLe~eL~ele~~  443 (604)
                      +.+...+..-+..+.++.+.|+..+...+.++.+|..-...+..+|..+...
T Consensus        48 ~~L~~~~q~sE~~L~~Lqq~fsq~q~~vq~qL~~Lt~~Re~V~~eL~rLQ~e   99 (112)
T 1x79_B           48 SALVLRAQASEILLEELQQGLSQAKRDVQEQMAVLMQSREQVSEELVRLQKD   99 (112)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            3333333333333333344444444444445555544444444444433333

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=81.66  E-value=26  Score=37.39  Aligned_cols=8  Identities=0%  Similarity=-0.143  Sum_probs=2.9

Q ss_pred             HHHhHHHH
Q 046695          422 EILGLYEE  429 (604)
Q Consensus       422 ei~~LqEk  429 (604)
                      ++...+.+
T Consensus       354 ~~~~~~~~  361 (487)
T 3oja_A          354 QVTLRKQA  361 (487)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            33333333

>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}

Probab=80.12  E-value=27  Score=29.84  Aligned_cols=42  Identities=10%  Similarity=0.249  Sum_probs=18.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHH
Q 046695          468 EIEQLKASIAERDKHIENLNRSLDSLKAERDRLESDVISRDD  509 (604)
Q Consensus       468 eIs~lk~el~e~~~~Le~L~~ek~~Le~el~~Leqe~~s~r~  509 (604)
                      ++..++.+=+.+-..|..|.+++..+..++..++.+....+.
T Consensus        12 eL~~l~~eE~~L~~eL~~lEke~~~l~~el~~le~E~~~L~~   53 (96)
T 3q8t_A           12 ELKELALEEERLIQELEDVEKNRKVVAENLEKVQAEAERLDQ   53 (96)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhh
Confidence            333333444444444444444444444444444444443333

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	604
d2ap3a1	185	Hypothetical protein MW0975 (SA0943) {Staphylococc	93.67
d1fxka_	107	Prefoldin beta subunit {Archaeon Methanobacterium	80.61

>d2ap3a1 a.24.27.1 (A:12-196) Hypothetical protein MW0975 (SA0943) {Staphylococcus aureus [TaxId: 1280]}

class: All alpha proteins
fold: Four-helical up-and-down bundle
superfamily: MW0975(SA0943)-like
family: MW0975(SA0943)-like
domain: Hypothetical protein MW0975 (SA0943)
species: Staphylococcus aureus [TaxId: 1280]

Probab=93.67  E-value=1.6  Score=36.18  Aligned_cols=41  Identities=5%  Similarity=0.090  Sum_probs=15.6

Q ss_pred             HHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 046695          484 ENLNRSLDSLKAERDRLESDVISRDDRMDQMEKHLQQLHME  524 (604)
Q Consensus       484 e~L~~ek~~Le~el~~Leqe~~s~r~~I~emE~~L~qLr~E  524 (604)
                      ..+......+......+...+......+..+...+..+...
T Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~  159 (185)
T d2ap3a1         119 SDYAKAYKKAVNSEKTLFKYLNQNDATQQGVNEKSKAIEQN  159 (185)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTSTTCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHhhHhHHHHHHHHHHHHHHH
Confidence            33333333333333333333333333444443333333333

>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Prefoldin
family: Prefoldin
domain: Prefoldin beta subunit
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=80.61  E-value=3.1  Score=34.00  Aligned_cols=28  Identities=11%  Similarity=0.170  Sum_probs=11.3

Q ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 046695          499 RLESDVISRDDRMDQMEKHLQQLHMEHT  526 (604)
Q Consensus       499 ~Leqe~~s~r~~I~emE~~L~qLr~E~e  526 (604)
                      .|...+..+...|..+++++..+..+..
T Consensus        69 ~l~~~~e~l~~~i~~l~~q~~~l~~~l~   96 (107)
T d1fxka_          69 ELQEKLETLQLREKTIERQEERVMKKLQ   96 (107)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333444444444444444444333333