Citrus Sinensis ID: 046711

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------21
Protein Sequence
ALGKERRFNGLKLQWGLDQFIPLEAFNDSTNGYLVKDTCVFGAEVFVKERSRVKGECLSMEKYAYSSKYVWKIDNFSKLGAGYKESQAFGAGNHKWKIELHPAGIDIGAADHLSMFLILENFTVENVQVYAEFTLRIWDQLGQSMNLFKVKCVSLHAINKFWFHTPKSSWGCPRFVSLSELNDPETGFLVNDVCVVEAEVTVLGISEPI
Secondary Structure (PSIPRED)
ccccEEEccccccccccccEEEccEEccccccEEEccEEEEccEEEEEEcccccccccEEEEEccccEEEEEEcccccccccEEEcccEEEccccEEEEEEcccccccccccEEEEEEEccccccccEEEEEEEEEEEEcccccccEEEEEEEEEEEccEEEEccccccccccccEEcccccccccccEEccEEEEEEEEEEEEEEccc
Secondary Structure Prediction (SSPRO)
cccEEEEEccccccccccccccHHHcccccccEEEccEEEEEEEEEEEccccccccEEEcccccccccEEEEEEcccHcccccccccEEEEcccEEEEEEEEcccccccccEEEEEEEEccccccccEEEEEEEEEEEEccccccEEEEccEEEEEccccEEEccccccccccccEEHHHcccccccEEEccEEEEEEEEEEEEEEccc
Coil and Loop (DISEMBL)
algkerrfnglklqwgldqfipleafndstngylvkdTCVFGAEVFVKersrvkgeclsmeKYAYSSKYVWKIDnfsklgagykesqafgagnhkwkielhpagidigaADHLSMFLILENFTVENVQVYAEFTLRIWDQLGQSMNLFKVKCVSLHAINKfwfhtpksswgcprfvslselndpetgfLVNDVCVVEAEVTVLGISEPI
Flexible Loop (DISEMBL)
algkerrfnglklqwgldqfIPLEAFNDSTNGYLVKDTCVFGAEVfvkersrvkgeclsmEKYAYSSKYVWKIDNFSKLGAGYKESQAFGAGNHKWKIELHPAGIDIGAADHLSMFLILENFTVENVQVYAEFTLRIWDQLGQSMNLFKVKCVSLHAINKFWFHTPKSSWGCPRFVSLSELNDPETGFLVNDVCVVEAEVTVLGISEPI
Low Complexity Region (SEG)
ALGKERRFNGLKLQWGLDQFIPLEAFNDSTNGYLVKDTCVFGAEVFVKERSRVKGECLSMEKYAYSSKYVWKIDNFSKLGAGYKESQAFGAGNHKWKIELHPAGIDIGAADHLSMFLILENFTVENVQVYAEFTLRIWDQLGQSMNLFKVKCVSLHAINKFWFHTPKSSWGCPRFVSLSELNDPETGFLVNDVCVVEAEVTVLGISEPI
Disordered region (IsUnstruct)
*******FNGLKLQWGLDQFIPLEAFNDSTNGYLVKDTCVFGAEVFVKERSRVKGECLSMEKYAYSSKYVWKIDNFSKLGAGYKESQAFGAGNHKWKIELHPAGIDIGAADHLSMFLILENFTVENVQVYAEFTLRIWDQLGQSMNLFKVKCVSLHAINKFWFHTPKSSWGCPRFVSLSELNDPETGFLVNDVCVVEAEVTVLGI****
Disordered Region (DISOPRED)
*****RRFNGLKLQWGLDQFIPLEAFNDSTNGYLVKDTCVFGAEV***************EKYAYSSKYVWKIDNFSKLGAGYKESQAFGAGNHKWKIELHPAGIDIGAADHLSMFLILENFTVENVQVYAEFTLRIWDQLGQ************HAINKFWFHTPKSSWGCPRFVSLSELNDPETGFLVNDVCVVEAEVTVLGISEP*
Disordered Region (DISEMBL)
ALGKERRFNGLKLQWGLDQFIPLEAFNDSTNGYLVKDTCVFGAEVFVKERSRVKGECLSMEKYAYSSKYVWKIDNFSKLGAGYKESQAFGAGNHKWKIELHPAGIDIGAADHLSMFLILENFTVENVQVYAEFTLRIWDQLGQSMNLFKVKCVSLHAINKFWFHTPKSSWGCPRFVSLSELNDPETGFLVNDVCVVEAEVTVLGISEPI
Disordered Region (DISPRO)
**GKERRFNGLKLQWGLDQFIPLEAFNDSTNGYLVKDTCVFGAEVFVKERSRVKGECLSMEKYAYSSKYVWKIDNFSKLGAGYKESQAFGAGNHKWKIELHPAGIDIGAADHLSMFLILENFTVENVQVYAEFTLRIWDQLGQSMNLFKVKCVSLHAINKFWFHTPKSSWGCPRFVSLSELNDPETGFLVNDVCVVEAEVTVLGISEPI
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
ALGKERRFNGLKLQWGLDQFIPLEAFNDSTNGYLVKDTCVFGAEVFVKERSRVKGECLSMEKYAYSSKYVWKIDNFSKLGAGYKESQAFGAGNHKWKIELHPAGIDIGAADHLSMFLILENFTVENVQVYAEFTLRIWDQLGQSMNLFKVKCVSLHAINKFWFHTPKSSWGCPRFVSLSELNDPETGFLVNDVCVVEAEVTVLGISEPI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	209	2.2.26 [Sep-21-2011]
Q9FPT1	1116	Ubiquitin carboxyl-termin	no	no	0.607	0.113	0.35	2e-14
Q84WU2	1115	Ubiquitin carboxyl-termin	no	no	0.607	0.113	0.326	1e-13
Q8T126	1304	Probable inactive serine/	no	no	0.760	0.121	0.251	7e-07
P34568	451	BTB and MATH domain-conta	yes	no	0.598	0.277	0.279	5e-05
Q8RY18	1055	MATH domain-containing pr	no	no	0.583	0.115	0.258	9e-05

>sp|Q9FPT1|UBP12_ARATH Ubiquitin carboxyl-terminal hydrolase 12 OS=Arabidopsis thaliana GN=UBP12 PE=1 SV=2

 Score = 79.0 bits (193), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 49/140 (35%), Positives = 73/140 (52%), Gaps = 13/140 (9%)

Query: 68  KYVWKIDNFSKLGAGYKESQAFGAGNHKWKIELHPAGIDIGAADHLSMFLILENFTVENV 127
           K+ W I NFS+       S  F  G +KW+I + P G ++   DHLSM+L + +      
Sbjct: 56  KFTWTIPNFSRQNTRKHYSDVFVVGGYKWRILIFPKGNNV---DHLSMYLDVSDAASLPY 112

Query: 128 --QVYAEFTLRIWDQLGQSMNLFKVKCVSLHAINKFWFHTPKSSWGCPRFVSLSELNDPE 185
               YA+F+L + +Q+      + V+  + H      F+  +S WG   F+ LSEL DP 
Sbjct: 113 GWSRYAQFSLAVVNQIHTR---YTVRKETQHQ-----FNARESDWGFTSFMPLSELYDPS 164

Query: 186 TGFLVNDVCVVEAEVTVLGI 205
            G+LVND  +VEAEV V  +
Sbjct: 165 RGYLVNDTVLVEAEVAVRKV 184

Recognizes and hydrolyzes the peptide bond at the C-terminal Gly of ubiquitin. Involved in the processing of poly-ubiquitin precursors as well as that of ubiquitinated proteins.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 4EC: .EC: 1EC: 9EC: .EC: 1EC: 2

>sp|Q84WU2|UBP13_ARATH Ubiquitin carboxyl-terminal hydrolase 13 OS=Arabidopsis thaliana GN=UBP13 PE=1 SV=1

 Score = 76.3 bits (186), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 47/144 (32%), Positives = 77/144 (53%), Gaps = 17/144 (11%)

Query: 66  SSKYVWKIDNFSKLGAGYKESQAFGAGNHKWKIELHPAGIDIGAADHLSMFLILENFTVE 125
           S K+ W I  F++L      S  F  G +KW+I + P G ++   DHLSM+L + +    
Sbjct: 53  SLKFTWTIPMFTRLNTRKHYSDVFVVGGYKWRILIFPKGNNV---DHLSMYLDVAD--AA 107

Query: 126 NVQV----YAEFTLRIWDQLGQSMNLFKVKCVSLHAINKFWFHTPKSSWGCPRFVSLSEL 181
           N+      Y++F+L + +Q+    N + ++  + H      F+  +S WG   F+ LSEL
Sbjct: 108 NLPYGWSRYSQFSLAVVNQVN---NRYSIRKETQHQ-----FNARESDWGFTSFMPLSEL 159

Query: 182 NDPETGFLVNDVCVVEAEVTVLGI 205
            +P  G+LVND  ++EAEV V  +
Sbjct: 160 YEPTRGYLVNDTVLIEAEVAVRKV 183

Recognizes and hydrolyzes the peptide bond at the C-terminal Gly of ubiquitin. Involved in the processing of poly-ubiquitin precursors as well as that of ubiquitinated proteins.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 1

EC: 2

>sp|Q8T126|FNKC_DICDI Probable inactive serine/threonine-protein kinase fnkC OS=Dictyostelium discoideum GN=fnkC PE=3 SV=1

 Score = 53.9 bits (128), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 50/199 (25%), Positives = 89/199 (44%), Gaps = 40/199 (20%)

Query: 16   GLDQFIPLEAFNDSTNGYLVKDTCVFGAEVFVKERSRVKGECLS-----MEKY--AYSSK 68
            G   FI L +  +  NG+LV +T           + R+     S      +KY    +  
Sbjct: 1125 GYGSFIGLFSLLNPNNGFLVNNTI----------KVRIDAAPTSPLVNTYDKYNIGLNQA 1174

Query: 69   YVWKIDNFSKLGAGYKESQAFGAGNHKWKIELHPAGIDIGAADHLSMFLILENFTVENVQ 128
            + + +   SK    +  S  F +   KW I+++P G    +++++S+FL   +   ENV 
Sbjct: 1175 FSYSVPMMSKKSEPFI-SPIFMSCGRKWIIKIYPMGQP--SSNYMSVFLEYRDEGEENVH 1231

Query: 129  VYAEFTLRIWDQLGQSMNLFKVKCVSLHAINKFW----FHTPKSSWGCPRFVSLSELNDP 184
                F+L +  QL    ++            K+W    F++  +S+G P+F+ +S L DP
Sbjct: 1232 ----FSLELISQLYPEQSI------------KYWVQYRFNSKSNSFGYPKFIGVSTLMDP 1275

Query: 185  ETGFLVNDVCVVEAEVTVL 203
            + GFLVND  ++   +  L
Sbjct: 1276 DMGFLVNDTIILNVSILQL 1294

Dictyostelium discoideum (taxid: 44689)

>sp|P34568|BAT43_CAEEL BTB and MATH domain-containing protein 43 OS=Caenorhabditis elegans GN=bath-43 PE=3 SV=2

 Score = 47.8 bits (112), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 40/143 (27%), Positives = 68/143 (47%), Gaps = 18/143 (12%)

Query: 69  YVWKIDNFS----KLGAGYKESQAFGAGNH---KWKIELHPAGIDIGAADHLSMFLILEN 121
           Y+W I+NFS    ++G   K S  F AG +   KW + ++P G+D  + D+LS++L+L  
Sbjct: 98  YMWTINNFSFCREEMGEVLK-SSTFSAGCNDKLKWCLRINPKGLDEESRDYLSLYLLL-- 154

Query: 122 FTVENVQVYAEFTLRIWDQLGQSMNLFKVKCVSLHAINKFWFHTPKSSWGCPRFVSLSEL 181
                 +V A+F   I       +N  + +  ++ +   + F   K  WG  +F+    L
Sbjct: 155 VQCNKSEVRAKFKFSI-------LNAKREETKAMESQRAYRFVQGK-DWGFKKFIRRDFL 206

Query: 182 NDPETGFLVNDVCVVEAEVTVLG 204
            D   G L  D   +  EV+V+ 
Sbjct: 207 LDEANGLLPGDRLSIFCEVSVVA 229

In complex with a cullin, may act in ubiquitination and proteasomal degradation processes.

Caenorhabditis elegans (taxid: 6239)

>sp|Q8RY18|Y5436_ARATH MATH domain-containing protein At5g43560 OS=Arabidopsis thaliana GN=At5g43560 PE=1 SV=1

 Score = 47.0 bits (110), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 36/139 (25%), Positives = 66/139 (47%), Gaps = 17/139 (12%)

Query: 68  KYVWKIDNFSKLGAGYKESQAFGAGNHKWKIELHPAGIDIGAADHLSMFLILENFT--VE 125
           K  W I+ FS +         F  G +KW I ++P G D+   +HLS+FL + +    + 
Sbjct: 70  KNTWTIEKFSDINKRELRGDVFEVGGYKWYILIYPQGCDV--CNHLSLFLCVAHHEKLLP 127

Query: 126 NVQVYAEFTLRIWDQLGQSMNLFKVKCVSLHAINKFWFHTPKSSWGCPRFVSLSELNDPE 185
               +A+FT+ +        N    K      +++FW    +  WG  +F+ L +L +  
Sbjct: 128 GWSHFAQFTIAV-------SNKDPKKSKHSDTLHRFWKK--EHDWGWKKFIELPKLKE-- 176

Query: 186 TGFLVNDVCV-VEAEVTVL 203
            GF+ +  C+ ++A+V V+
Sbjct: 177 -GFIDDSGCLTIKAQVQVI 194

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	209
21537273	309	unknown [Arabidopsis thaliana]	0.947	0.640	0.471	7e-45
18401489	309	TRAF-like family protein [Arabidopsis th	0.947	0.640	0.466	2e-44
11994555	304	unnamed protein product [Arabidopsis tha	0.947	0.651	0.466	2e-44
255556544	455	nucleic acid binding protein, putative [	0.947	0.435	0.466	3e-44
297830352	309	hypothetical protein ARALYDRAFT_479214 [	0.947	0.640	0.457	8e-44
224100507	249	predicted protein [Populus trichocarpa]	0.956	0.803	0.480	3e-42
449441502	316	PREDICTED: BTB/POZ and MATH domain-conta	0.928	0.613	0.468	8e-42
449522688	316	PREDICTED: BTB/POZ and MATH domain-conta	0.928	0.613	0.473	1e-41
356505546	233	PREDICTED: ubiquitin carboxyl-terminal h	0.913	0.819	0.432	2e-38
356519881	310	PREDICTED: uncharacterized protein LOC10	0.937	0.632	0.418	8e-37

>gi|21537273|gb|AAM61614.1| unknown [Arabidopsis thaliana]

 Score =  186 bits (471), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 99/210 (47%), Positives = 132/210 (62%), Gaps = 12/210 (5%)

Query: 3   GKERRFNGLKLQWGLDQFIPLEAFNDSTNGYLVKDTCVFGAEVFV-KERSRVKGECLSME 61
           G ERRF+ +K +WG D+FIP   F+DS+NGYL++DTC+FGA+VFV KER   +GECLSM 
Sbjct: 109 GNERRFHSVKREWGFDKFIPTGTFSDSSNGYLMEDTCMFGADVFVSKERRSGRGECLSMI 168

Query: 62  KYAYSSKYVWKIDNFSKLGAGYKESQAFGAGNHKWKIELHPAGIDIGAADHLSMFLILEN 121
           K A SSK+VWKI+NFSKL     +S AF AG+ KWKIE +P G   G   HLS++L L +
Sbjct: 169 KDATSSKHVWKIENFSKLDKESYDSNAFFAGDRKWKIEFYPTGTKQGTGTHLSIYLTLVD 228

Query: 122 FTV--ENVQVYAEFTLRIWDQLGQSMNLFKVKCVSLHAINKFWFHTPKSSWGCPRFVSLS 179
                +  +++ EFT+RI+DQL       KV           WF    S  G  ++VS+ 
Sbjct: 229 PETISDGTKIFVEFTIRIFDQLQGRHIAGKVTK---------WFSRSSSEHGWVKYVSMV 279

Query: 180 ELNDPETGFLVNDVCVVEAEVTVLGISEPI 209
               P +G L+ DVC+VEA+V V GI+  I
Sbjct: 280 YFTQPNSGLLLKDVCLVEADVCVHGITSAI 309

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18401489|ref|NP_566576.1| TRAF-like family protein [Arabidopsis thaliana] gi|332642426|gb|AEE75947.1| TRAF-like family protein [Arabidopsis thaliana]

 Score =  184 bits (467), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 98/210 (46%), Positives = 132/210 (62%), Gaps = 12/210 (5%)

Query: 3   GKERRFNGLKLQWGLDQFIPLEAFNDSTNGYLVKDTCVFGAEVFV-KERSRVKGECLSME 61
           G ERRF+ +K +WG D+FIP   F+D++NGYL++DTC+FGA+VFV KER   +GECLSM 
Sbjct: 109 GNERRFHSVKREWGFDKFIPTGTFSDASNGYLMEDTCMFGADVFVSKERRSGRGECLSMI 168

Query: 62  KYAYSSKYVWKIDNFSKLGAGYKESQAFGAGNHKWKIELHPAGIDIGAADHLSMFLILEN 121
           K A SSK+VWKI+NFSKL     +S AF AG+ KWKIE +P G   G   HLS++L L +
Sbjct: 169 KDATSSKHVWKIENFSKLDKESYDSNAFFAGDRKWKIEFYPTGTKQGTGTHLSIYLTLVD 228

Query: 122 FTV--ENVQVYAEFTLRIWDQLGQSMNLFKVKCVSLHAINKFWFHTPKSSWGCPRFVSLS 179
                +  +++ EFT+RI+DQL       KV           WF    S  G  ++VS+ 
Sbjct: 229 PETISDGTKIFVEFTIRIFDQLQGRHIAGKVTK---------WFSRSSSEHGWVKYVSMV 279

Query: 180 ELNDPETGFLVNDVCVVEAEVTVLGISEPI 209
               P +G L+ DVC+VEA+V V GI+  I
Sbjct: 280 YFTQPNSGLLLKDVCLVEADVCVHGITSAI 309

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|11994555|dbj|BAB02742.1| unnamed protein product [Arabidopsis thaliana]

 Score =  184 bits (466), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 98/210 (46%), Positives = 132/210 (62%), Gaps = 12/210 (5%)

Query: 3   GKERRFNGLKLQWGLDQFIPLEAFNDSTNGYLVKDTCVFGAEVFV-KERSRVKGECLSME 61
           G ERRF+ +K +WG D+FIP   F+D++NGYL++DTC+FGA+VFV KER   +GECLSM 
Sbjct: 104 GNERRFHSVKREWGFDKFIPTGTFSDASNGYLMEDTCMFGADVFVSKERRSGRGECLSMI 163

Query: 62  KYAYSSKYVWKIDNFSKLGAGYKESQAFGAGNHKWKIELHPAGIDIGAADHLSMFLILEN 121
           K A SSK+VWKI+NFSKL     +S AF AG+ KWKIE +P G   G   HLS++L L +
Sbjct: 164 KDATSSKHVWKIENFSKLDKESYDSNAFFAGDRKWKIEFYPTGTKQGTGTHLSIYLTLVD 223

Query: 122 FTV--ENVQVYAEFTLRIWDQLGQSMNLFKVKCVSLHAINKFWFHTPKSSWGCPRFVSLS 179
                +  +++ EFT+RI+DQL       KV           WF    S  G  ++VS+ 
Sbjct: 224 PETISDGTKIFVEFTIRIFDQLQGRHIAGKVTK---------WFSRSSSEHGWVKYVSMV 274

Query: 180 ELNDPETGFLVNDVCVVEAEVTVLGISEPI 209
               P +G L+ DVC+VEA+V V GI+  I
Sbjct: 275 YFTQPNSGLLLKDVCLVEADVCVHGITSAI 304

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255556544|ref|XP_002519306.1| nucleic acid binding protein, putative [Ricinus communis] gi|223541621|gb|EEF43170.1| nucleic acid binding protein, putative [Ricinus communis]

 Score =  183 bits (465), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 98/210 (46%), Positives = 130/210 (61%), Gaps = 12/210 (5%)

Query: 3   GKERRFNGLKLQWGLDQFIPLEAFNDSTNGYLVKDTCVFGAEVFV-KERSRVKGECLSME 61
           GKE RF+G +L+WG DQ IPL    D+ NGYLV+DTCVFGAEVFV KE    KGECLSM 
Sbjct: 255 GKECRFHGFRLEWGFDQLIPLATLKDTKNGYLVEDTCVFGAEVFVRKESCTGKGECLSMI 314

Query: 62  KYAYSSKYVWKIDNFSKLGAGYKESQAFGAGNHKWKIELHPAGIDIGAADHLSMFLILEN 121
           K + +SK +W+ +NFSKL A   +S+ F AG+ +WKI+L+P G  +G+  HLS+FL L +
Sbjct: 315 KSSSTSKNLWRFENFSKLDAECNDSKTFVAGDQRWKIQLYPKGKGLGSGTHLSLFLALAD 374

Query: 122 FT--VENVQVYAEFTLRIWDQLGQSMNLFKVKCVSLHAINKFWFHTPKSSWGCPRFVSLS 179
            T      ++ A+FTLRI DQ  +  +LF            FWF    S  G  RF  L 
Sbjct: 375 LTAITPGFKILADFTLRILDQ-SRGSHLF--------GKANFWFSASSSVCGWSRFYPLD 425

Query: 180 ELNDPETGFLVNDVCVVEAEVTVLGISEPI 209
           +L      +L  D C+ EAE+TVLGI++ +
Sbjct: 426 QLYASSNAYLFKDTCLGEAEITVLGITDEL 455

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297830352|ref|XP_002883058.1| hypothetical protein ARALYDRAFT_479214 [Arabidopsis lyrata subsp. lyrata] gi|297328898|gb|EFH59317.1| hypothetical protein ARALYDRAFT_479214 [Arabidopsis lyrata subsp. lyrata]

 Score =  182 bits (462), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 96/210 (45%), Positives = 131/210 (62%), Gaps = 12/210 (5%)

Query: 3   GKERRFNGLKLQWGLDQFIPLEAFNDSTNGYLVKDTCVFGAEVFV-KERSRVKGECLSME 61
           G ERRF+ +K +WG D+FIP   F+D++NGYL++DTC+FGA+VFV KER   +GECLSM 
Sbjct: 109 GNERRFHAVKREWGFDKFIPTGTFSDASNGYLMEDTCMFGADVFVSKERRSGRGECLSMI 168

Query: 62  KYAYSSKYVWKIDNFSKLGAGYKESQAFGAGNHKWKIELHPAGIDIGAADHLSMFLILEN 121
           K A SSK+VWKI+NFSKL     +S AF AG+ KWK+  +P G   G   HLS++L L +
Sbjct: 169 KDATSSKHVWKIENFSKLDKESYDSNAFFAGDRKWKVRFYPTGTKQGTGTHLSIYLTLVD 228

Query: 122 FTV--ENVQVYAEFTLRIWDQLGQSMNLFKVKCVSLHAINKFWFHTPKSSWGCPRFVSLS 179
                +  +++ EFT+RI+DQL       KV           WF    S  G  ++VS+ 
Sbjct: 229 PETISDGTKIFVEFTIRIFDQLQGRHIAGKVTK---------WFSRSSSEHGWVKYVSMV 279

Query: 180 ELNDPETGFLVNDVCVVEAEVTVLGISEPI 209
               P +G L+ DVC+VEA+V V GI+  I
Sbjct: 280 YFTQPNSGLLLKDVCLVEADVCVHGITSAI 309

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224100507|ref|XP_002311903.1| predicted protein [Populus trichocarpa] gi|222851723|gb|EEE89270.1| predicted protein [Populus trichocarpa]

 Score =  177 bits (448), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 101/210 (48%), Positives = 129/210 (61%), Gaps = 10/210 (4%)

Query: 1   ALGKERRFNGLKLQWGLDQFIPLEAFNDSTNGYLVKDTCVFGAEVFV-KERSRVKGECLS 59
           A GKERRF+GLKL+ G DQFI L  FND+  G++++DTCV GAEVFV  ERSR KGE LS
Sbjct: 47  AAGKERRFHGLKLECGFDQFIKLSTFNDARYGFVLEDTCVLGAEVFVCGERSRGKGEVLS 106

Query: 60  MEKYAYSSKYVWKIDNFSKLGAGYKESQAFGAGNHKWKIELHPAGIDIGAADHLSMFLIL 119
           M+K   +SKY WKI +FSKL    +ESQ F  G+H+WKI L+P G   G   HLS++L L
Sbjct: 107 MKKDPTASKYTWKIVDFSKLDEKRQESQIFSTGDHQWKIVLYPKGKGPGMGTHLSLYLAL 166

Query: 120 ENFTVE-NVQVYAEFTLRIWDQLGQSMNLFKVKCVSLHAINKFWFHTPKSSWGCPRFVSL 178
           +  T+    +VYAE+TLR+ DQL         +   ++   K WF    S  G  R+  L
Sbjct: 167 DLATLPAGCRVYAEYTLRLVDQLYD-------RKFDMYGKAKSWFGASSSENGWSRYGLL 219

Query: 179 SELNDPETGFLVNDVCVVEAEVTVLGISEP 208
           S L          D+C++EAEV VLGI  P
Sbjct: 220 S-LYQSNNYLFAKDICMIEAEVIVLGIGSP 248

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449441502|ref|XP_004138521.1| PREDICTED: BTB/POZ and MATH domain-containing protein 3-like [Cucumis sativus]

 Score =  175 bits (444), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 97/207 (46%), Positives = 125/207 (60%), Gaps = 13/207 (6%)

Query: 4   KERRFNGLKLQWGLDQFIPLEAFNDSTNGYLVKDTCVFGAEVFV-KERSRV-KGECLSME 61
           K RRF G+K QWG D++I L+ F +S+NGYLV D CVFGAEVFV KE  +  KGECLSM 
Sbjct: 115 KPRRFRGMKKQWGFDKYISLKEFKESSNGYLVDDVCVFGAEVFVCKENFKGGKGECLSMI 174

Query: 62  KYAYSSKYVWKIDNFSKLGAGYKESQAFGAGNHKWKIELHPAGIDIGAADHLSMFLILEN 121
           K   + K+VWKIDNFSKL A   ES+ F AG+ KWKI ++P G   G   HLS +L L +
Sbjct: 175 KSPVTYKHVWKIDNFSKLDAESYESKIFNAGDKKWKIRVYPKGHGSGEGSHLSPYLELAD 234

Query: 122 FTV--ENVQVYAEFTLRIWDQLGQSMNLFKVKCVSLHAINKFWFHTPKSSWGCPRFVSLS 179
                   ++YAE TLR+ DQ+    +  KV          +WF       G PRF+ L 
Sbjct: 235 PAALHPATKIYAEVTLRLQDQIYSKHHSGKV---------SYWFSASNPEVGGPRFILLD 285

Query: 180 ELNDPETGFLVNDVCVVEAEVTVLGIS 206
               P  GFLV D  +VEAEV+++G++
Sbjct: 286 NFKQPNIGFLVKDAFIVEAEVSIIGVA 312

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449522688|ref|XP_004168358.1| PREDICTED: BTB/POZ and MATH domain-containing protein 3-like [Cucumis sativus]

 Score =  175 bits (444), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 98/207 (47%), Positives = 124/207 (59%), Gaps = 13/207 (6%)

Query: 4   KERRFNGLKLQWGLDQFIPLEAFNDSTNGYLVKDTCVFGAEVFV-KERSRV-KGECLSME 61
           K RRF G+K QWG D++I L+ F +S+NGYLV D CVFGAEVFV KE  +  KGECLSM 
Sbjct: 115 KPRRFRGMKKQWGFDKYISLKEFKESSNGYLVDDVCVFGAEVFVCKENFKGGKGECLSMI 174

Query: 62  KYAYSSKYVWKIDNFSKLGAGYKESQAFGAGNHKWKIELHPAGIDIGAADHLSMFLILEN 121
           K   + K+VWKIDNFSKL A   ES+ F AG+ KWKI ++P G   G   HLS +L L +
Sbjct: 175 KSPVTYKHVWKIDNFSKLDAESYESKIFNAGDKKWKIRVYPKGHGSGEGSHLSPYLELAD 234

Query: 122 FTV--ENVQVYAEFTLRIWDQLGQSMNLFKVKCVSLHAINKFWFHTPKSSWGCPRFVSLS 179
                   ++YAE TLR+ DQ+    +  KV          +WF       G PRF+ L 
Sbjct: 235 PAALHPATKIYAEVTLRLQDQIYSKHHSGKV---------SYWFSASNPEVGGPRFILLD 285

Query: 180 ELNDPETGFLVNDVCVVEAEVTVLGIS 206
               P  GFLV D  +VEAEV V+G++
Sbjct: 286 NFKQPNIGFLVKDAFIVEAEVNVIGVA 312

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356505546|ref|XP_003521551.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 12-like [Glycine max]

 Score =  164 bits (414), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 89/206 (43%), Positives = 125/206 (60%), Gaps = 15/206 (7%)

Query: 6   RRFNGLKLQWGLDQFIPLEAFNDSTNGYLVKDTCVFGAEVFVKERSRVKGECLSMEKYAY 65
           RRF+ LK +WG+ +FI ++ FND +NGYL+ DTCVFGAEVFV  ++  KG+CLSM     
Sbjct: 37  RRFHVLKTEWGVAKFIDIDTFNDPSNGYLMDDTCVFGAEVFVV-KTTTKGDCLSMIHGPI 95

Query: 66  SSKYVWKIDNFSKLGAGYKESQAFGAGNHKWKIELHPAGIDIGAADHLSMFLILENFTV- 124
              + WK DNFS       ES++F  GN++WK+ L+P GI  G  + +S+FL LE  T+ 
Sbjct: 96  PLSHSWKFDNFSLAKLDKYESESFVGGNYRWKLILYPNGIVEGKGNSISLFLTLEVSTLP 155

Query: 125 ENVQVYAEFTLRIWDQLGQSMNLFKVKCVSLHAINKFW--FHTPKSSWGCPRFVSLSELN 182
            N ++  E TLR   Q+              HA   F   F +  S+WG  + V+L++L 
Sbjct: 156 PNTKLVVECTLRAKKQISGH-----------HAQTGFCRKFSSSNSTWGTRQLVALAKLT 204

Query: 183 DPETGFLVNDVCVVEAEVTVLGISEP 208
           DP +GFLVND C++EAE T+LG+  P
Sbjct: 205 DPNSGFLVNDTCILEAEFTILGLMTP 230

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356519881|ref|XP_003528597.1| PREDICTED: uncharacterized protein LOC100779090 [Glycine max]

 Score =  159 bits (401), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 87/208 (41%), Positives = 123/208 (59%), Gaps = 12/208 (5%)

Query: 5   ERRFNGLKLQWGLDQFIPLEAFNDSTNGYLVKDTCVFGAEVFV-KERSRVKGECLSMEKY 63
           ERRF+ +K +WG+DQFIPL  FN ++ GYLV DTC FGAEVFV KERS  KGECL M K 
Sbjct: 111 ERRFHKMKAEWGIDQFIPLRDFNLASKGYLVDDTCAFGAEVFVCKERSTGKGECLVMMKE 170

Query: 64  AYSSKYVWKIDNFSKLGAGYKESQAFGAGNHKWKIELHPAGIDIGAADHLSMFLILENFT 123
           A   K++++ DN SKL     +S+ F AGN KWKI+L+P G      ++LS++L L + +
Sbjct: 171 AILYKHLYEFDNLSKLDLECYDSKPFNAGNFKWKIKLYPKGKGAELGNYLSLYLALADPS 230

Query: 124 VEN--VQVYAEFTLRIWDQLGQSMNLFKVKCVSLHAINKFWFHTPKSSWGCPRFVSLSEL 181
             +   ++YA+ TLRI DQ     +  K           +WF       G   F+ ++  
Sbjct: 231 ALSPCSKIYAQITLRILDQKQAKHHFGKA---------NYWFSASSHENGAAIFMPINNF 281

Query: 182 NDPETGFLVNDVCVVEAEVTVLGISEPI 209
            +   G++V D C VEAEV +LG+ + +
Sbjct: 282 TNQNFGYVVKDSCFVEAEVIILGVVDAL 309

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	209
TAIR|locus:2089045	309	AT3G17380 "AT3G17380" [Arabido	0.947	0.640	0.471	1.9e-44
TAIR|locus:2092344	379	AT3G20370 "AT3G20370" [Arabido	0.894	0.493	0.305	1.5e-20
TAIR|locus:2092329	363	AT3G20360 "AT3G20360" [Arabido	0.875	0.504	0.321	3.6e-19
TAIR|locus:2016590	396	ZW9 "AT1G58270" [Arabidopsis t	0.894	0.472	0.290	3.6e-19
TAIR|locus:2179744	351	AT5G26260 "AT5G26260" [Arabido	0.933	0.555	0.281	1.3e-17
TAIR|locus:2179699	350	AT5G26280 "AT5G26280" [Arabido	0.928	0.554	0.285	6.1e-17
TAIR|locus:2056008	411	AT2G04190 "AT2G04190" [Arabido	0.933	0.474	0.281	2.6e-16
TAIR|locus:2055998	420	AT2G04170 "AT2G04170" [Arabido	0.923	0.459	0.278	2.8e-16
TAIR|locus:2053674	365	AT2G15710 "AT2G15710" [Arabido	0.746	0.427	0.316	6.1e-16
TAIR|locus:2075321	291	AT3G46190 "AT3G46190" [Arabido	0.722	0.518	0.295	7.7e-16

TAIR|locus:2089045 AT3G17380 "AT3G17380" [Arabidopsis thaliana (taxid:3702)]

 Score = 468 (169.8 bits), Expect = 1.9e-44, P = 1.9e-44
 Identities = 99/210 (47%), Positives = 137/210 (65%)

Query:     3 GKERRFNGLKLQWGLDQFIPLEAFNDSTNGYLVKDTCVFGAEVFV-KERSRVKGECLSME 61
             G ERRF+ +K +WG D+FIP   F+D++NGYL++DTC+FGA+VFV KER   +GECLSM 
Sbjct:   109 GNERRFHSVKREWGFDKFIPTGTFSDASNGYLMEDTCMFGADVFVSKERRSGRGECLSMI 168

Query:    62 KYAYSSKYVWKIDNFSKLGAGYKESQAFGAGNHKWKIELHPAGIDIGAADHLSMFLIL-E 120
             K A SSK+VWKI+NFSKL     +S AF AG+ KWKIE +P G   G   HLS++L L +
Sbjct:   169 KDATSSKHVWKIENFSKLDKESYDSNAFFAGDRKWKIEFYPTGTKQGTGTHLSIYLTLVD 228

Query:   121 NFTV-ENVQVYAEFTLRIWDQLGQSMNLFKVKCVSLHAINKFWFHTPKSSWGCPRFVSLS 179
               T+ +  +++ EFT+RI+DQL Q  ++          + K WF    S  G  ++VS+ 
Sbjct:   229 PETISDGTKIFVEFTIRIFDQL-QGRHI-------AGKVTK-WFSRSSSEHGWVKYVSMV 279

Query:   180 ELNDPETGFLVNDVCVVEAEVTVLGISEPI 209
                 P +G L+ DVC+VEA+V V GI+  I
Sbjct:   280 YFTQPNSGLLLKDVCLVEADVCVHGITSAI 309

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2092344 AT3G20370 "AT3G20370" [Arabidopsis thaliana (taxid:3702)]

 Score = 244 (91.0 bits), Expect = 1.5e-20, P = 1.5e-20
 Identities = 62/203 (30%), Positives = 97/203 (47%)

Query:     7 RFNGLKLQWGLDQFIPLEAFNDSTNGYLVK-DTCVFGAEVFVKERSRVKGECLSMEKYAY 65
             +F+  K  WG  Q +P++ F D T GYL   D C FG +V +      K E  S+ +   
Sbjct:   179 KFSVFKTMWGFSQVLPIDTFKDPTKGYLYDGDHCEFGVDVTMPSLYE-KSELFSVTENFL 237

Query:    66 SSKYVWKIDNFSKLGAGYKESQAFGAGNHKWKIELHPAGIDIGAADHLSMFLILE-NFTV 124
             + ++ W I  FS L      S+ F  G   W I+++P+G+  G    LSM+L L  N   
Sbjct:   238 NPRFTWTIRGFSTLLKNSYLSEVFSIGGRSWNIQINPSGLGTGEGKALSMYLGLNVNEIF 297

Query:   125 ENVQ-VYAEFTLRIWDQLGQSMNLFKVKCVSLHAINKFWFHTP---KSSWGCPRFVSLSE 180
                + +Y    LR  +QL    NL  ++      ++  W++ P   + SWG P F+    
Sbjct:   298 RPYEKIYVRAKLRALNQL----NLSNIE----RELD-IWYNGPGYGEYSWGFPEFIYFPY 348

Query:   181 LNDPETGFLVNDVCVVEAEVTVL 203
             L D   GF+ NDV +V+ E+  +
Sbjct:   349 LTDSSKGFVKNDVLMVQVEMEAI 371

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2092329 AT3G20360 "AT3G20360" [Arabidopsis thaliana (taxid:3702)]

 Score = 231 (86.4 bits), Expect = 3.6e-19, P = 3.6e-19
 Identities = 63/196 (32%), Positives = 91/196 (46%)

Query:     7 RFNGLKLQWGLDQFIPLEAFNDSTNGYLVK-DTCVFGAEVFVKERSRVKGECLSMEKYAY 65
             RF+ +K  WG  + +PL  FN+  NGYL   D C FG +V +      K E  S+ K   
Sbjct:   162 RFSAIKRMWGFSKVLPLITFNNLKNGYLYDVDHCEFGVDVIIPPFYE-KSEVFSVTKSFP 220

Query:    66 SSKYVWKIDNFSKLGAGYKESQAFGAGNHKWKIELHPAGIDIGAADHLSMFLIL---ENF 122
             S ++ W I  +S L   Y  S+ F  G   W + +   G       +LS++L L   E  
Sbjct:   221 SPRFTWYIQGYSTLPTDYL-SEEFIIGGKSWNLRIFKNGFGAFEGKNLSLYLNLGPQELL 279

Query:   123 TVENV-QVYAEFTLRIWDQLGQSMNLFKVKCVSLHAINKFWFHTPKSSWGCPRFVSLSEL 181
               +   +VY    LR+ +Q G   NL   + +     N  WF      WG   F+ LS+L
Sbjct:   280 KAKPYDKVYVRAKLRVPNQFGSQSNLVLERPLD----N--WFSPQTIGWGYADFMPLSDL 333

Query:   182 NDPETGFLVNDVCVVE 197
              +   GFLVND+ VV+
Sbjct:   334 RNSSKGFLVNDMLVVQ 349

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2016590 ZW9 "AT1G58270" [Arabidopsis thaliana (taxid:3702)]

 Score = 233 (87.1 bits), Expect = 3.6e-19, P = 3.6e-19
 Identities = 59/203 (29%), Positives = 104/203 (51%)

Query:     6 RRFNGLKLQWGLDQFIPLEAFNDSTNGYLVK-DTCVFGAEVFVKERSRVKGECLSMEKYA 64
             +RF+  K QWGL QF+P+  F +   GY  + ++ VFG ++ + +      E  S E+  
Sbjct:   191 QRFHLFKQQWGLLQFLPIYYFENPAYGYFFEGESVVFGVDINIVKPFE-NWEVFSNEQNI 249

Query:    65 YSSKYVWKIDNFSKLGAGYKESQAFGAGNHKWKIELHPAGIDIGAADHLSMFLILENFTV 124
                 + W++  FS        S +F +G   W ++++P G+     + LS++L+ +    
Sbjct:   250 RDPIFEWRLTKFSTRFLDSYTSDSFSSGGRNWALKVYPNGVGNATGNSLSLYLLSDQ--- 306

Query:   125 ENVQVYAEFTLRIWDQLGQSMNLFKVKCVSLHAINKFWFHTPKSSWGCPRFVSLSELNDP 184
              N + Y E  LR+ DQ+ QS N F+ K  +       W +  ++ WG  RF+S +++ + 
Sbjct:   307 SNDKGYVEAKLRVIDQI-QSNN-FEKKVAA-------WPNATENGWGFDRFLSFADIKNT 357

Query:   185 ETGFLVNDVCVVEAEVTVLGISE 207
               GFLVND   ++ EV +L  S+
Sbjct:   358 SKGFLVNDT--LKLEVQILSFSK 378

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2179744 AT5G26260 "AT5G26260" [Arabidopsis thaliana (taxid:3702)]

 Score = 217 (81.4 bits), Expect = 1.3e-17, P = 1.3e-17
 Identities = 58/206 (28%), Positives = 96/206 (46%)

Query:     3 GKERRFNGLKLQWGLDQFIPLEAFNDSTNGYLVKDTCVFGAEVFVKERSRVKGECLSMEK 62
             G  +R+N  K +WG  Q I L  F ++  GYLV+DT  FGAE+F+   +  K E ++   
Sbjct:   150 GTVKRYNDAKKEWGFTQLISLPTFYNANEGYLVQDTASFGAEIFIVNPTE-KQEKVTFIS 208

Query:    63 YAYSSKYVWKIDNFSKLGAGYKESQAFGAGNHKWKIELHPAGIDIGAADHLSMFLILENF 122
                 + + WKI  FS L   +  S  F  G+  W++  +P G   G    L +FL  +  
Sbjct:   209 NPPDNVFTWKILRFSTLEDKFYYSDDFLVGDRYWRLGFNPKGSGGGRPHALPIFLYAQGH 268

Query:   123 TVENV--QVYAEFTLRIWDQLGQSMNLFKVKCVSLHAINKFWFHTPKSSWGCPRFVSLSE 180
                 V    +    LR+ +Q  +S N  ++   + + I   +        G    + +SE
Sbjct:   269 KANAVVTNTWGAVNLRLKNQ--RSSNHKQLYSAAWYPIRSDY------GVGVNNIILMSE 320

Query:   181 LNDPETGFLVNDVCVVEAEVTVLGIS 206
             L D   G++VND  + EAE+  + ++
Sbjct:   321 LKDASKGYMVNDAIIFEAEMVKVSVT 346

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2179699 AT5G26280 "AT5G26280" [Arabidopsis thaliana (taxid:3702)]

 Score = 211 (79.3 bits), Expect = 6.1e-17, P = 6.1e-17
 Identities = 59/207 (28%), Positives = 100/207 (48%)

Query:     3 GKERRFNGLKLQWGLDQFIPLEAFNDSTNGYLVKDTCVFGAEVFVKERSRVKGECLSMEK 62
             G  +R+N  K +WG  Q IP   F ++  GYL +DT  FGAE+F+ + ++ + E ++   
Sbjct:   149 GLVKRYNNAKKEWGFGQLIPRSTFYNANEGYLDQDTGSFGAEIFIVKPAQQQ-EKVTFIS 207

Query:    63 YAYSSKYVWKIDNFSKLGAGYKESQAFGAGNHKWKIELHPAGIDIGAADH-LSMFLILEN 121
                ++ + WKI  FS L   +  S  F   +  W++  +P G D G   H L +FL  + 
Sbjct:   208 NPPNNVFTWKILRFSTLEDKFYYSDDFLVEDRYWRLGFNPKG-DGGGRPHALPIFLFAQG 266

Query:   122 FTVENV--QVYAEFTLRIWDQLGQSMNLFKVKCVSLHAINKFWFHTPKSSWGCPRFVSLS 179
                  V    +    LR+ +Q  +S N  ++   + + I   +        G    + L+
Sbjct:   267 HKANAVATNTWGAVNLRLKNQ--RSTNHRQIYSAAWYPIGSGY------GVGVNNIILLA 318

Query:   180 ELNDPETGFLVNDVCVVEAEVTVLGIS 206
             +LND   G+LVND  + EAE+  + I+
Sbjct:   319 DLNDASKGYLVNDAIIFEAEMVKVSIT 345

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0016020 "membrane" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0000041 "transition metal ion transport" evidence=RCA

TAIR|locus:2056008 AT2G04190 "AT2G04190" [Arabidopsis thaliana (taxid:3702)]

 Score = 208 (78.3 bits), Expect = 2.6e-16, P = 2.6e-16
 Identities = 58/206 (28%), Positives = 102/206 (49%)

Query:     3 GKERRFNGLKLQWGLDQFIPLEAFNDSTNGYLVKDTCVFGAEVFVKERSRVKGECLSMEK 62
             G ++R+N    +WG  + IPL  F D++ GYL +DT  FGAE+F+    +V+ E ++   
Sbjct:   210 GIQKRYNYKNKEWGYGKLIPLSTFLDTSQGYLEQDTASFGAEIFLCPPIQVQ-EKVTFIS 268

Query:    63 YAYSSKYVWKIDNFSKLGAGYKESQAFGAGNHKWKIELHPAGIDIGAADHLSMFLILENF 122
                ++ + WKI +FS L      S  F   +  W++ ++P G   G +  + +FL  +  
Sbjct:   269 NPPNNVFTWKILHFSTLEDIVYYSDDFLVEDRYWRLGVNPKGTGDGRSQAIKIFLYAQGH 328

Query:   123 TVENV--QVYAEFTLRIWDQLGQSMNLFKVKCVSLHAINKFWFHTPKSSWGCPRFVSLSE 180
                 V    +    LR+ +Q  +S N  ++   +L+ I   +        G    +SL+E
Sbjct:   329 KPNAVVSSTWGAVNLRVKNQ--RSSNHSQIYSAALYPIRNDY------GVGVNTVLSLAE 380

Query:   181 LNDPETGFLVNDVCVVEAEVTVLGIS 206
             LND    +LVND  + EAE+  + ++
Sbjct:   381 LNDAVKEYLVNDSIIFEAEMVKVSVT 406

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005739 "mitochondrion" evidence=IDA

TAIR|locus:2055998 AT2G04170 "AT2G04170" [Arabidopsis thaliana (taxid:3702)]

 Score = 208 (78.3 bits), Expect = 2.8e-16, P = 2.8e-16
 Identities = 58/208 (27%), Positives = 100/208 (48%)

Query:     3 GKERRFNGLKLQWGLDQFIPLEAFNDSTNGYLVKDTCVFGAEVFVKERSRVKGECLSMEK 62
             G  +R+N  K +WG  + IPL  F D+  GYL +D   FGAE+F     +V+ E ++   
Sbjct:   219 GIVKRYNDAKKEWGYGKLIPLTTFLDTNEGYLEQDIASFGAEIFSGTAVQVQ-EKVTFIS 277

Query:    63 YAYSSKYVWKIDNFSKLGAGYKESQAFGAGNHKWKIELHPAGIDIGAADHLSMFLILENF 122
                ++ + WKI +FS L   +  S  F   +  W++  +P G   G +  + +FL  +  
Sbjct:   278 NPPNNVFTWKILHFSNLEDKFYYSDDFLVEDRYWRLGFNPKGTGDGRSQAIPIFLYAQGH 337

Query:   123 TVENV--QVYAEFTLRIWDQLGQSMNLFKVKCVSLHAINKFWFHTPKSSWGCP--RFVSL 178
                 V    +    LR+ +Q  +S N  ++   +       W+ T +S +G      +SL
Sbjct:   338 KPNAVATNTWGAVNLRLKNQ--RSSNHAQIYSAA-------WYPT-RSDYGVGVNTIISL 387

Query:   179 SELNDPETGFLVNDVCVVEAEVTVLGIS 206
             +E ND   G+ VND  + EAE+  + ++
Sbjct:   388 AEFNDASKGYSVNDSIIFEAEMVKVSVT 415

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2053674 AT2G15710 "AT2G15710" [Arabidopsis thaliana (taxid:3702)]

 Score = 203 (76.5 bits), Expect = 6.1e-16, P = 6.1e-16
 Identities = 57/180 (31%), Positives = 82/180 (45%)

Query:     6 RRFNGLKLQWGLDQFIPLEAFNDSTNGYLVK-DTCVFGAEVFVKERSRVKGECLSMEKYA 64
             +RFN L+  WGL Q + LE FND  NGY  + + C FG +V V      K E +S ++  
Sbjct:   190 KRFNALRTVWGLSQVLSLETFNDLENGYTFEGEQCEFGVDVMVASPI-TKWEVVSFDEKL 248

Query:    65 YSSKYVWKIDNFSKLGAGYKESQAFGAGNHKWKIELHPAGIDIGAADHLSMFLIL---EN 121
                K+ W + +FS L   +  S+ F  G   W ++++P G        LS+FL L   E 
Sbjct:   249 DILKFSWSVKDFSVLKEEFYVSERFSMGGRLWDLQMYPKGDPRRDKKWLSIFLRLSGSET 308

Query:   122 FTVENVQVYAEFTLRIWDQLGQSMNLFKVKCVSLHAINKFWFHTPKSSWGCPRFVSLSEL 181
              TV+  ++Y    LR+ D LG                   WF      WG   F+S S+L
Sbjct:   309 LTVDE-KIYVIAHLRVLDPLGN------------------WFRDRNKGWGYLEFLSFSKL 349

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2075321 AT3G46190 "AT3G46190" [Arabidopsis thaliana (taxid:3702)]

 Score = 198 (74.8 bits), Expect = 7.7e-16, P = 7.7e-16
 Identities = 49/166 (29%), Positives = 86/166 (51%)

Query:    44 EVFVKERSRVKGECLSMEKYAYSSKYVWKIDNFSKLGAGYKESQAFGAGNHKWKIELHPA 103
             +VFV +R+  K E  S ++   +  + W + NFS L      S  F +G+  W ++++P 
Sbjct:   140 DVFVAQRN--KSEVFSYDENISNPVFTWSLPNFSTLTLDSYTSDPFSSGDRNWVLKVYPN 197

Query:   104 GIDIGAADHLSMFLILENFTVENVQVYAEFTLRIWDQLGQSMNLFKVKCVSLHAINKFWF 163
             G  +G  + LS++L+ E+    N + Y   TLR+ +Q+G S N+ K          + W 
Sbjct:   198 GDGVGKDNSLSLYLLSES----NEKNYVRATLRVLNQIG-SDNVEKPV--------EGWP 244

Query:   164 HTPKSSWGCPRFVSLSELNDPETGFLVNDVCVVEAEVTVLGISEPI 209
             +  ++ WG   F+ L++L D   GF+V+D+  VE E+  +    PI
Sbjct:   245 NAAENGWGYQEFIPLADLQDATKGFVVDDLLEVEVEIMAISKQTPI 290

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	AT3G17380	meprin and TRAF homology domain-containing protein / MATH domain-containing protein; meprin and TRAF homology domain-containing protein / MATH domain-containing protein; FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; EXPRESSED IN- 22 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- TRAF-like (InterPro-IPR008974), MATH (InterPro-IPR002083); BEST Arabidopsis thaliana protein match is- meprin and TRAF homology domain-containing protein / MATH domain-containing protein (TAIR-AT3G220 [...] (309 aa)
		(Arabidopsis thaliana)
Predicted Functional Partners:
	AT1G63310	unknown protein; FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unkn [...] (154 aa)				•					0.451

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	209
cd00121	126	cd00121, MATH, MATH (meprin and TRAF-C homology) d	8e-25
pfam00917	116	pfam00917, MATH, MATH domain	1e-08
cd03774	139	cd03774, MATH_SPOP, Speckle-type POZ protein (SPOP	2e-08
smart00061	95	smart00061, MATH, meprin and TRAF homology	3e-06
cd00270	149	cd00270, MATH_TRAF_C, Tumor Necrosis Factor Recept	4e-05
COG5077	1089	COG5077, COG5077, Ubiquitin carboxyl-terminal hydr	9e-05

>gnl|CDD|238068 cd00121, MATH, MATH (meprin and TRAF-C homology) domain; an independent folding unit with an eight-stranded beta-sandwich structure found in meprins, TRAFs and other proteins

 Score = 94.0 bits (234), Expect = 8e-25
 Identities = 48/136 (35%), Positives = 72/136 (52%), Gaps = 13/136 (9%)

Query: 68  KYVWKIDNFSKLGAGYKESQAFGAGNHKWKIELHPAGIDIGAADHLSMFLILEN--FTVE 125
           K+ WKI NFS+L      S  F  G +KW+I ++P G D  + D+LS++L L+     +E
Sbjct: 2   KHTWKIVNFSELEGESIYSPPFEVGGYKWRIRIYPNG-DGESGDYLSLYLELDKGESDLE 60

Query: 126 NVQVYAEFTLRIWDQLGQSMNLFKVKCVSLHAINKFWFHTPKSSWGCPRFVSLSELNDPE 185
              V AEFTL++ +Q G        K +S  +    +F    S WG P+F+S  +L D  
Sbjct: 61  KWSVRAEFTLKLVNQNGG-------KSLS-KSFTHVFFSEKGSGWGFPKFISWDDLEDS- 111

Query: 186 TGFLVNDVCVVEAEVT 201
             +LV+D   +E EV 
Sbjct: 112 -YYLVDDSLTIEVEVK 126

Meprins comprise a class of extracellular metalloproteases which are anchored to the membrane and are capable of cleaving growth factors, extracellular matrix proteins, and biologically active peptides. TRAF molecules serve as adapter proteins that link cell surface receptors of the Tumor Necrosis Factor and 1nterleukin-1/Toll-like families to downstream kinase cascades, which results in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses in the immune and inflammatory systems. Other members include the ubiquitin ligases, TRIM37 and SPOP, and the ubiquitin-specific proteases, HAUSP and Ubp21p. A large number of uncharacterized members mostly from lineage-specific expansions in C. elegans and rice contain MATH and BTB domains, similar to SPOP. The MATH domain has been shown to bind peptide/protein substrates in TRAFs and HAUSP. It is possible that the MATH domain in other members of this superfamily also interacts with various protein substrates. The TRAF domain may also be involved in the trimerization of TRAFs. Based on homology, it is postulated that the MATH domain in meprins may be involved in its tetramer assembly and that the MATH domain, in general, may take part in diverse modular arrangements defined by adjacent multimerization domains. Length = 126

>gnl|CDD|216189 pfam00917, MATH, MATH domain

 Score = 51.1 bits (123), Expect = 1e-08
 Identities = 34/135 (25%), Positives = 57/135 (42%), Gaps = 24/135 (17%)

Query: 73  IDNFSKL--GAGYKESQAFGAGNHKWKIELHPAGIDIGAADHLSMFLILENFTVE---NV 127
           I NFSK+  G  Y  S         W++ ++  G        L ++L  E    +     
Sbjct: 1   IKNFSKIKEGENYYTSPYEERFGIPWRLRIYRNG------GFLGLYLHCEKGEKDELLGW 54

Query: 128 QVYAEFTLRIWDQLGQSMNLFKVKCVSLHAINKFWFHTPKSSWGCPRFVSLSELNDPETG 187
            +  EFTL++    G+S          L   NK    T  + +G  +F+S  +L   E  
Sbjct: 55  SIETEFTLKLVSDNGKS----------LTKRNKSHVFTKPTGYGWGKFISWDDL---END 101

Query: 188 FLVNDVCVVEAEVTV 202
           ++V+D  ++EAEV +
Sbjct: 102 YVVDDTIIIEAEVKI 116

This motif has been called the Meprin And TRAF-Homology (MATH) domain. This domain is hugely expanded in the nematode C. elegans. Length = 116

>gnl|CDD|239743 cd03774, MATH_SPOP, Speckle-type POZ protein (SPOP) family, MATH domain; composed of proteins with similarity to human SPOP

 Score = 51.0 bits (122), Expect = 2e-08
 Identities = 36/143 (25%), Positives = 62/143 (43%), Gaps = 16/143 (11%)

Query: 68  KYVWKIDNFSKLGAGYKE---SQAFGAGNH---KWKIELHPAGIDIGAADHLSMFLILEN 121
            Y+W I NFS       E   S  F +G +   KW + ++P G+D  + D+LS++L+L  
Sbjct: 6   CYMWTISNFSFCREEMGEVIKSSTFSSGANDKLKWCLRVNPKGLDEESKDYLSLYLLL-- 63

Query: 122 FTVENVQVYAEFTLRIWDQLGQSMNLFKVKCVSLHAINKFWFHTPKSSWGCPRFVSLSEL 181
            +    +V A+F   I +  G+     +          + +       WG  +F+    L
Sbjct: 64  VSCPKSEVRAKFKFSILNAKGEETKAME--------SQRAYRFVQGKDWGFKKFIRRDFL 115

Query: 182 NDPETGFLVNDVCVVEAEVTVLG 204
            D   G L +D   +  EV+V+ 
Sbjct: 116 LDEANGLLPDDKLTLFCEVSVVQ 138

SPOP was isolated as a novel antigen recognized by serum from a scleroderma patient, whose overexpression in COS cells results in a discrete speckled pattern in the nuclei. It contains an N-terminal MATH domain and a C-terminal BTB (also called POZ) domain. Together with Cul3, SPOP constitutes an ubiquitin E3 ligase which is able to ubiquitinate the PcG protein BMI1, the variant histone macroH2A1 and the death domain-associated protein Daxx. Therefore, SPOP may be involved in the regulation of these proteins and may play a role in transcriptional regulation, apoptosis and X-chromosome inactivation. Cul3 binds to the BTB domain of SPOP whereas Daxx and the macroH2A1 nonhistone region have been shown to bind to the MATH domain. Both MATH and BTB domains are necessary for the nuclear speckled accumulation of SPOP. There are many proteins, mostly uncharacterized, containing both MATH and BTB domains from C. elegans and plants which are excluded from this family. Length = 139

>gnl|CDD|214496 smart00061, MATH, meprin and TRAF homology

 Score = 43.8 bits (104), Expect = 3e-06
 Identities = 28/110 (25%), Positives = 46/110 (41%), Gaps = 20/110 (18%)

Query: 70  VWKIDNFSKLGAG-YKESQAFGAGNHKWKIELHPAGIDIGAADHLSMFLILENFTVENV- 127
                N S+L  G    S +    N  W+++++           LS++L  E    ++  
Sbjct: 3   SHTFKNVSRLEEGESYFSPSEEHFNIPWRLKIYRKN------GFLSLYLHCEKEECDSRK 56

Query: 128 -QVYAEFTLRIWDQLGQSMNLFKVKCVSLHAINKFWFHTPKSSWGCPRFV 176
             + AEFTL++  Q G+S+   K K V         F  P S WG  +F+
Sbjct: 57  WSIEAEFTLKLVSQNGKSL-SKKDKHV---------FEKP-SGWGFSKFI 95

Length = 95

>gnl|CDD|238168 cd00270, MATH_TRAF_C, Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link cell surface TNFRs and receptors of the interleukin-1/Toll-like family to downstream kinase signaling cascades which results in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses in the immune and inflammatory systems

 Score = 41.8 bits (99), Expect = 4e-05
 Identities = 35/161 (21%), Positives = 56/161 (34%), Gaps = 40/161 (24%)

Query: 67  SKYVWKIDNFSKLGAGYKE-------SQAFGAGNHKWK--IELHPAGIDIGAADHLSMFL 117
              +WKI ++S+              S  F    + +K  + L+  G   G   HLS+F+
Sbjct: 1   GVLIWKIKDYSRKLQEAVAGSNTVLYSPPFYTSRYGYKLCLRLYLNGDGTGKGTHLSLFV 60

Query: 118 ---------ILE---NFTVENVQVYAEFTLRIWDQLGQSMNLFKVKCVSLHA-INKFWFH 164
                    +LE      +         TL   DQ   S    K    +     N   F 
Sbjct: 61  HVMKGEYDALLEWPFRGKI-------TLTLL--DQSDDS--KRKHITETFMPDPNSSAFQ 109

Query: 165 TPKSS-----WGCPRFVSLSELNDPETGFLVNDVCVVEAEV 200
            P +      +G P FV L +L     G++ +D   ++ EV
Sbjct: 110 RPPTGENNIGFGYPEFVPLEKLESR--GYVKDDTLFIKVEV 148

There are at least six mammalian and three Drosophila proteins containing TRAF domains. The mammalian TRAFs display varying expression profiles, indicating independent and cell type-specific regulation. They display distinct, as well as overlapping functions and interactions with receptors. Most TRAFs, except TRAF1, share N-terminal homology and contain a RING domain, multiple zinc finger domains, and a TRAF domain. TRAFs form homo- and heterotrimers through its TRAF domain. The TRAF domain can be divided into a more divergent N-terminal alpha helical region (TRAF-N), and a highly conserved C-terminal MATH subdomain (TRAF-C) with an eight-stranded beta-sandwich structure. TRAF-N mediates trimerization while TRAF-C interacts with receptors. Length = 149

>gnl|CDD|227409 COG5077, COG5077, Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]

 Score = 42.6 bits (100), Expect = 9e-05
 Identities = 40/141 (28%), Positives = 60/141 (42%), Gaps = 16/141 (11%)

Query: 69  YVWKIDNFSKLGAGYKESQAFGAGNHKWKIELHPAGIDIGAADHLSMFLILENFTVENVQ 128
           + WK+  +S+L     ES  F  G H WKI L P G +       S++L  E       Q
Sbjct: 41  FTWKVKRWSELAKKV-ESPPFSVGGHTWKIILFPQGNNQCNV---SVYLEYE------PQ 90

Query: 129 VYAEFTLRIWDQLGQ-SMNLFKVKCVSLHAINK--FWFHTPKSSWGCPRFVSLSELNDPE 185
              E   + +D   Q + ++   K  ++  INK    F    + WG   F+ L++L +P 
Sbjct: 91  ELEETGGKYYDCCAQFAFDISNPKYPTIEYINKSHHRFSMESTDWGFTNFIDLNKLIEPS 150

Query: 186 TG---FLVNDVCVVEAEVTVL 203
            G   FL     V+   V VL
Sbjct: 151 PGRPPFLEEGTLVITVYVRVL 171

Length = 1089

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	209
cd03772	137	MATH_HAUSP Herpesvirus-associated ubiquitin-specif	99.97
cd03775	134	MATH_Ubp21p Ubiquitin-specific protease 21 (Ubp21p	99.96
cd03774	139	MATH_SPOP Speckle-type POZ protein (SPOP) family,	99.96
cd03773	132	MATH_TRIM37 Tripartite motif containing protein 37	99.96
cd03780	148	MATH_TRAF5 Tumor Necrosis Factor Receptor (TNFR)-A	99.95
cd00270	149	MATH_TRAF_C Tumor Necrosis Factor Receptor (TNFR)-	99.94
cd03776	147	MATH_TRAF6 Tumor Necrosis Factor Receptor (TNFR)-A	99.94
cd03777	186	MATH_TRAF3 Tumor Necrosis Factor Receptor (TNFR)-A	99.94
cd03779	147	MATH_TRAF1 Tumor Necrosis Factor Receptor (TNFR) A	99.94
cd03778	164	MATH_TRAF2 Tumor Necrosis Factor Receptor (TNFR) A	99.93
cd03781	154	MATH_TRAF4 Tumor Necrosis Factor Receptor (TNFR)-A	99.93
cd03771	167	MATH_Meprin Meprin family, MATH domain; Meprins ar	99.93
cd00121	126	MATH MATH (meprin and TRAF-C homology) domain; an	99.92
PF00917	119	MATH: MATH domain; InterPro: IPR002083 Although ap	99.88
cd03782	167	MATH_Meprin_Beta Meprin family, Beta subunit, MATH	99.84
cd03783	167	MATH_Meprin_Alpha Meprin family, Alpha subunit, MA	99.83
smart00061	95	MATH meprin and TRAF homology.	99.79
COG5077	1089	Ubiquitin carboxyl-terminal hydrolase [Posttransla	99.56
KOG1987	297	consensus Speckle-type POZ protein SPOP and relate	98.87
cd03772	137	MATH_HAUSP Herpesvirus-associated ubiquitin-specif	98.64
KOG1863	1093	consensus Ubiquitin carboxyl-terminal hydrolase [P	98.43
cd03775	134	MATH_Ubp21p Ubiquitin-specific protease 21 (Ubp21p	98.41
cd03774	139	MATH_SPOP Speckle-type POZ protein (SPOP) family,	98.15
PF00917	119	MATH: MATH domain; InterPro: IPR002083 Although ap	97.86
KOG1987	297	consensus Speckle-type POZ protein SPOP and relate	97.79
KOG0297	391	consensus TNF receptor-associated factor [Signal t	97.46
cd03773	132	MATH_TRIM37 Tripartite motif containing protein 37	97.31
cd00121	126	MATH MATH (meprin and TRAF-C homology) domain; an	96.94
COG5077	1089	Ubiquitin carboxyl-terminal hydrolase [Posttransla	95.81
KOG1863	1093	consensus Ubiquitin carboxyl-terminal hydrolase [P	94.55

>cd03772 MATH_HAUSP Herpesvirus-associated ubiquitin-specific protease (HAUSP, also known as USP7) family, N-terminal MATH (TRAF-like) domain; composed of proteins similar to human HAUSP, an enzyme that specifically catalyzes the deubiquitylation of p53 and MDM2, hence playing an important role in the p53-MDM2 pathway

Probab=99.97  E-value=2e-30  Score=195.92  Aligned_cols=130  Identities=22%  Similarity=0.364  Sum_probs=111.9

Q ss_pred             CCEEEEEEcCccccCCCeeecccEEecCceEEEEEecCCCcC--CCCCeEEEEEEEccCC-CCCceEEEEEEEEEEcCCC
Q 046711           66 SSKYVWKIDNFSKLGAGYKESQAFGAGNHKWKIELHPAGIDI--GAADHLSMFLILENFT-VENVQVYAEFTLRIWDQLG  142 (209)
Q Consensus        66 ~~~~~w~I~nfS~l~~~~~~S~~F~~gg~~W~l~vyP~G~~~--~~~~~lSlyL~l~~~~-~~~~~~~~~f~l~ilnq~~  142 (209)
                      .++++|+|+|||.+ ++.+.|+.|.+||++|+|.+||+|...  +..++||+||.|.+.. ...|++.|+|+|+|+||++
T Consensus         2 ~~~~~~~I~~~S~l-~e~~~S~~f~vgG~~W~i~~~P~g~~~~~~~~~~lsvyL~~~~~~~~~~w~i~a~~~~~l~~~~~   80 (137)
T cd03772           2 EATFSFTVERFSRL-SESVLSPPCFVRNLPWKIMVMPRNYPDRNPHQKSVGFFLQCNAESDSTSWSCHAQAVLRIINYKD   80 (137)
T ss_pred             CcEEEEEECCcccC-CCcEECCCEEECCcceEEEEEeCCCCCCCCCCCeEEEEEeeCCcCCCCCCeEEEEEEEEEEcCCC
Confidence            47899999999998 678999999999999999999999654  2358999999998654 4589999999999999986


Q ss_pred             CCccEEEEeeeeccccceeEecCCCCCCcccceeeccccCCCCCCeeECCEEEEEEEEEEEe
Q 046711          143 QSMNLFKVKCVSLHAINKFWFHTPKSSWGCPRFVSLSELNDPETGFLVNDVCVVEAEVTVLG  204 (209)
Q Consensus       143 ~~~~~~k~~~~~~~~~~~~~F~~~~~~wG~~~Fi~~~~L~~~~~gyl~~D~l~i~~~v~v~~  204 (209)
                      +..+..+.        ..+.|.....+|||++||+|++|+++++|||+||+|+|||+|+|=.
T Consensus        81 ~~~~~~~~--------~~~~f~~~~~~~G~~~fi~~~~L~~~~sgyl~~D~l~Ie~~V~~~~  134 (137)
T cd03772          81 DEPSFSRR--------ISHLFFSKENDWGFSNFMTWSEVTDPEKGFIEDDTITLEVYVQADA  134 (137)
T ss_pred             CcccEEEe--------eeeEEcCCCCCccchheeEHHHhcCCCCCcEECCEEEEEEEEEeeC
Confidence            44555444        5578876678999999999999987779999999999999998754

It contains an N-terminal TRAF-like domain and a C-terminal catalytic protease (C19 family) domain. The tumor suppressor p53 protein is a transcription factor that responds to many cellular stress signals and is regulated primarily through ubiquitylation and subsequent degradation. MDM2 is a RING-finger E3 ubiquitin ligase that promotes p53 ubiquitinylation. p53 and MDM2 bind to the same site in the N-terminal TRAF-like domain of HAUSP in a mutually exclusive manner. HAUSP also interacts with the Epstein-Barr nuclear antigen 1 (EBNA1) protein of the Epstein-Barr virus (EBV), which efficiently immortalizes infected cells predisposing the host to a variety of cancers. EBNA1

>cd03775 MATH_Ubp21p Ubiquitin-specific protease 21 (Ubp21p) family, MATH domain; composed of fungal proteins with similarity to Ubp21p of fission yeast

Probab=99.96  E-value=4e-29  Score=188.18  Aligned_cols=123  Identities=28%  Similarity=0.483  Sum_probs=106.7

Q ss_pred             EEEEEEcCccccCCCeeecccEEecCceEEEEEecCCCcCCCCCeEEEEEEEccCC------CCCceEEEEEEEEEEcCC
Q 046711           68 KYVWKIDNFSKLGAGYKESQAFGAGNHKWKIELHPAGIDIGAADHLSMFLILENFT------VENVQVYAEFTLRIWDQL  141 (209)
Q Consensus        68 ~~~w~I~nfS~l~~~~~~S~~F~~gg~~W~l~vyP~G~~~~~~~~lSlyL~l~~~~------~~~~~~~~~f~l~ilnq~  141 (209)
                      +|+|+|+|||.+ ++.+.|++|.+|||+|+|.+||+|...  .+|+||||.+.+.+      +.+|.+.|+|+|+|+||.
T Consensus         2 ~f~w~I~~fS~~-~~~~~S~~F~vGG~~W~l~~yP~G~~~--~~~iSlyL~l~~~~~~~~~~~~~~~v~a~f~~~l~n~~   78 (134)
T cd03775           2 SFTWRIKNWSEL-EKKVHSPKFKCGGFEWRILLFPQGNSQ--TGGVSIYLEPHPEEEEKAPLDEDWSVCAQFALVISNPG   78 (134)
T ss_pred             cEEEEECCcccC-CcceeCCCEEECCeeEEEEEeCCCCCC--CCeEEEEEEecCcccccccCCCCCeEEEEEEEEEEcCC
Confidence            589999999996 578999999999999999999999865  78999999997643      257899999999999998


Q ss_pred             CCCccEEEEeeeeccccceeEecCCCCCCcccceeeccccCCC----CCCeeECCEEEEEEEEE
Q 046711          142 GQSMNLFKVKCVSLHAINKFWFHTPKSSWGCPRFVSLSELNDP----ETGFLVNDVCVVEAEVT  201 (209)
Q Consensus       142 ~~~~~~~k~~~~~~~~~~~~~F~~~~~~wG~~~Fi~~~~L~~~----~~gyl~~D~l~i~~~v~  201 (209)
                      ++..+..+.        ..++|+....+|||.+||++++|+++    ++|||+||+|+|+|.|.
T Consensus        79 ~~~~~~~~~--------~~~~F~~~~~~wG~~~fi~~~~L~~~~~~~~~g~l~nD~l~I~~~~~  134 (134)
T cd03775          79 DPSIQLSNV--------AHHRFNAEDKDWGFTRFIELRKLAHRTPDKPSPFLENGELNITVYVR  134 (134)
T ss_pred             CCccceEcc--------ceeEeCCCCCCCChhHcccHHHHcccccCCCCceeECCEEEEEEEEC
Confidence            755555544        67889877789999999999999954    57999999999999873

Ubp21p is a deubiquitinating enzyme that may be involved in the regulation of the protein kinase Prp4p, which controls the formation of active spliceosomes. Members of this family are similar to human HAUSP (Herpesvirus-associated ubiquitin-specific protease) in that they contain an N-terminal MATH domain and a C-terminal catalytic protease (C19 family) domain. HAUSP is also an ubiquitin-specific protease that specifically catalyzes the deubiquitylation of p53 and MDM2. The MATH domain of HAUSP contains the binding site for p53 and MDM2. Similarly, the MATH domain of members in this family may be involved in substrate binding.

>cd03774 MATH_SPOP Speckle-type POZ protein (SPOP) family, MATH domain; composed of proteins with similarity to human SPOP

Probab=99.96  E-value=3.2e-28  Score=184.23  Aligned_cols=130  Identities=28%  Similarity=0.518  Sum_probs=107.6

Q ss_pred             CCCEEEEEEcCccccC---CCeeecccEEecCc---eEEEEEecCCCcCCCCCeEEEEEEEccCCCCCceEEEEEEEEEE
Q 046711           65 YSSKYVWKIDNFSKLG---AGYKESQAFGAGNH---KWKIELHPAGIDIGAADHLSMFLILENFTVENVQVYAEFTLRIW  138 (209)
Q Consensus        65 ~~~~~~w~I~nfS~l~---~~~~~S~~F~~gg~---~W~l~vyP~G~~~~~~~~lSlyL~l~~~~~~~~~~~~~f~l~il  138 (209)
                      ...+|+|+|+|||.++   ++.+.|++|.+||+   +|+|++||+|...+..+|+||||++.+.  ..+++.|+|+|+|+
T Consensus         3 ~~~~~~w~I~~fS~~~~~~~~~i~S~~F~vgg~~~~~W~l~~yP~G~~~~~~~~iSlyL~l~~~--~~~~v~a~f~~~l~   80 (139)
T cd03774           3 VKFCYMWTISNFSFCREEMGEVIKSSTFSSGANDKLKWCLRVNPKGLDEESKDYLSLYLLLVSC--PKSEVRAKFKFSIL   80 (139)
T ss_pred             eEEEEEEEECCchhhhhcCCCEEECCCeecCCcCCceEEEEEeCCCCCCCCCCeEEEEEEEccC--CCCcEEEEEEEEEE
Confidence            3568999999999874   67899999999985   9999999999875567899999999763  34679999999999


Q ss_pred             cCCCCCccEEEEeeeeccccceeEecCCCCCCcccceeeccccCCCCCCeeECCEEEEEEEEEEEe
Q 046711          139 DQLGQSMNLFKVKCVSLHAINKFWFHTPKSSWGCPRFVSLSELNDPETGFLVNDVCVVEAEVTVLG  204 (209)
Q Consensus       139 nq~~~~~~~~k~~~~~~~~~~~~~F~~~~~~wG~~~Fi~~~~L~~~~~gyl~~D~l~i~~~v~v~~  204 (209)
                      ||+++.......       ...+.|.. ..+|||.+||++++|+++.+|||+||+|+|+|+|+|++
T Consensus        81 n~~~~~~~~~~~-------~~~~~f~~-~~~wG~~~fi~~~~L~~~~~g~l~dD~l~I~c~I~V~~  138 (139)
T cd03774          81 NAKGEETKAMES-------QRAYRFVQ-GKDWGFKKFIRRDFLLDEANGLLPDDKLTLFCEVSVVQ  138 (139)
T ss_pred             ecCCCeeeeecc-------cCcEeCCC-CCccCHHHeeeHHHhhhhhcccccCCEEEEEEEEEEEc
Confidence            999743221111       03466764 57999999999999987778999999999999999986

SPOP was isolated as a novel antigen recognized by serum from a scleroderma patient, whose overexpression in COS cells results in a discrete speckled pattern in the nuclei. It contains an N-terminal MATH domain and a C-terminal BTB (also called POZ) domain. Together with Cul3, SPOP constitutes an ubiquitin E3 ligase which is able to ubiquitinate the PcG protein BMI1, the variant histone macroH2A1 and the death domain-associated protein Daxx. Therefore, SPOP may be involved in the regulation of these proteins and may play a role in transcriptional regulation, apoptosis and X-chromosome inactivation. Cul3 binds to the BTB domain of SPOP whereas Daxx and the macroH2A1 nonhistone region have been shown to bind to the MATH domain. Both MATH and BTB domains are necessary for the nuclear speckled accumulation of SPOP. There are many proteins, mostly uncharacterized, conta

>cd03773 MATH_TRIM37 Tripartite motif containing protein 37 (TRIM37) family, MATH domain; TRIM37 is a peroxisomal protein and is a member of the tripartite motif (TRIM) protein subfamily, also known as the RING-B-box-coiled-coil (RBCC) subfamily of zinc-finger proteins

Probab=99.96  E-value=5.5e-28  Score=181.21  Aligned_cols=125  Identities=22%  Similarity=0.323  Sum_probs=106.5

Q ss_pred             CCCCEEEEEEcCccccC--CCeeecccEEecCceEEEEEecCCCcCCCCCeEEEEEEEccCCCCCceEEEEEEEEEEcCC
Q 046711           64 AYSSKYVWKIDNFSKLG--AGYKESQAFGAGNHKWKIELHPAGIDIGAADHLSMFLILENFTVENVQVYAEFTLRIWDQL  141 (209)
Q Consensus        64 ~~~~~~~w~I~nfS~l~--~~~~~S~~F~~gg~~W~l~vyP~G~~~~~~~~lSlyL~l~~~~~~~~~~~~~f~l~ilnq~  141 (209)
                      ++.++++|+|+|||.++  ++.+.|++|.+||++|+|.+||+|...+.++||||||++.++  ..+.+.++|+|+|+||.
T Consensus         2 ~~~~~~~~~I~~fS~~~~~~~~~~S~~F~vgG~~W~i~~yP~G~~~~~~~~lSl~L~l~~~--~~~~~~~~~~l~llnq~   79 (132)
T cd03773           2 PPYDSATFTLENFSTLRQSADPVYSDPLNVDGLCWRLKVYPDGNGEVRGNFLSVFLELCSG--LGEASKYEYRVEMVHQA   79 (132)
T ss_pred             CCCcccEEEECChhhhhcCCcceeCCCeEeCCccEEEEEECCCCCCCCCCEEEEEEEeecC--CCCceeEEEEEEEEcCC
Confidence            35678999999999985  678999999999999999999999886667899999999864  34678999999999996


Q ss_pred             CCCccEEEEeeeeccccceeEecCCCCCCcccceeeccccCCCCCCeeEC--CEEEEEEEEE
Q 046711          142 GQSMNLFKVKCVSLHAINKFWFHTPKSSWGCPRFVSLSELNDPETGFLVN--DVCVVEAEVT  201 (209)
Q Consensus       142 ~~~~~~~k~~~~~~~~~~~~~F~~~~~~wG~~~Fi~~~~L~~~~~gyl~~--D~l~i~~~v~  201 (209)
                      ++..+..+.        ..+.|.. ..+|||.+||++++|++  +|||+|  |+|+|+|.|+
T Consensus        80 ~~~~~~~~~--------~~~~f~~-~~~wG~~~Fi~~~~L~~--~gfl~~~~D~l~i~~~v~  130 (132)
T cd03773          80 NPTKNIKRE--------FASDFEV-GECWGYNRFFRLDLLIN--EGYLLPENDTLILRFSVR  130 (132)
T ss_pred             CCccceEEe--------ccccccC-CCCcCHHHhccHHHHhh--CCCcCCCCCEEEEEEEEe
Confidence            545555444        5667864 57899999999999986  799999  9999999985

Mutations in the human TRIM37 gene (also known as MUL) cause Mulibrey (muscle-liver-brain-eye) nanism, a rare growth disorder of prenatal onset characterized by dysmorphic features, pericardial constriction and hepatomegaly. TRIM37, similar to other TRIMs, contains a cysteine-rich, zinc-binding RING-finger domain followed by another cysteine-rich zinc-binding domain, the B-box, and a coiled-coil domain. TRIM37 is autoubiquitinated in a RING domain-dependent manner, indicating that it functions as an ubiquitin E3 ligase. In addition to the tripartite motif, TRIM37 also contains a MATH domain C-terminal to the coiled-coil domain. The MATH domain of TRIM37 has been shown to interact with the TRAF domain of six known TRAFs i

>cd03780 MATH_TRAF5 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF5 subfamily, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses

Probab=99.95  E-value=4.4e-27  Score=179.40  Aligned_cols=131  Identities=22%  Similarity=0.360  Sum_probs=107.2

Q ss_pred             CEEEEEEcCccccC-----CC--eeecccE--EecCceEEEEEecCCCcCCCCCeEEEEEEEccCC---CCCceEEEEEE
Q 046711           67 SKYVWKIDNFSKLG-----AG--YKESQAF--GAGNHKWKIELHPAGIDIGAADHLSMFLILENFT---VENVQVYAEFT  134 (209)
Q Consensus        67 ~~~~w~I~nfS~l~-----~~--~~~S~~F--~~gg~~W~l~vyP~G~~~~~~~~lSlyL~l~~~~---~~~~~~~~~f~  134 (209)
                      +.+.|+|++||.++     ++  .+.|++|  .++||+|+|++||+|.+.+.++|||+||+++.++   ...|++.++++
T Consensus         1 g~~vwkI~~ys~~~~~~~~g~~~~i~S~~Fyt~~~Gy~w~i~~ypnG~~~~~~~~iSv~l~l~~g~~D~~l~wp~~~~~t   80 (148)
T cd03780           1 GKLIWKVTDYKMKKKEAVDGHTVSIFSQPFYTSRCGYRLCARAYLNGDGSGKGTHLSLYFVVMRGEFDSLLQWPFRQRVT   80 (148)
T ss_pred             CEEEEEECCHHHHHHhhcCCCccEEECCCcccCCCCeeEEEEEEcCCCCCCCCCEEEEEEEEecCccccccCcceEEEEE
Confidence            57899999999985     44  7999999  8999999999999999987889999999999865   56899999999


Q ss_pred             EEEEcCCCCCccEEEEeeeeccccceeEecCC----CCCCcccceeeccccCCCCCCeeECCEEEEEEEE
Q 046711          135 LRIWDQLGQSMNLFKVKCVSLHAINKFWFHTP----KSSWGCPRFVSLSELNDPETGFLVNDVCVVEAEV  200 (209)
Q Consensus       135 l~ilnq~~~~~~~~k~~~~~~~~~~~~~F~~~----~~~wG~~~Fi~~~~L~~~~~gyl~~D~l~i~~~v  200 (209)
                      |.|+||.+...++...  . .+.+....|...    +..||+++||++++|+..+.+||.||+++|+|.|
T Consensus        81 fsLlDq~~~~~~~~~~--~-~~~~~~~~F~rp~~~~n~~~G~~~Fi~~~~Le~s~~~ylkdD~~~Ik~~v  147 (148)
T cd03780          81 LMLLDQSGKKNHIMET--F-KADPNSSSFKRPDGEMNIASGCPRFVAHSVLENAKNTYIKDDTLFLKVAV  147 (148)
T ss_pred             EEEECCCCCCCCccee--e-ecCCccccccCCCCCCCCCcChhheeEHHHhhcccCCcCcCCEEEEEEEE
Confidence            9999998755543211  1 110123557644    5579999999999998644699999999999987

TRAF5 was identified as an activator of nuclear factor-kappaB and a regulator of lymphotoxin-beta receptor and CD40 signaling. Its interaction with CD40 is indirect, involving hetero-oligomerization with TRAF3. In addition, TRAF5 has been shown to associate with other TNFRs including CD27, CD30, OX40 and GITR (glucocorticoid-induced TNFR). It plays a role in modulating Th2 immune responses (driven by OX40 costimulation) and T-cell activation (triggered by GITR). It is also involved in osteoclastogenesis. TRAF5 contains a RING finger domain, five zinc finger domains, and a TRAF domain. The TRAF domain can be divided into a more dive

>cd00270 MATH_TRAF_C Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link cell surface TNFRs and receptors of the interleukin-1/Toll-like family to downstream kinase signaling cascades which results in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses in the immune and inflammatory systems

Probab=99.94  E-value=6.7e-27  Score=178.83  Aligned_cols=130  Identities=23%  Similarity=0.349  Sum_probs=103.8

Q ss_pred             CEEEEEEcCccccC-------CCeeecccEEec--CceEEEEEecCCCcCCCCCeEEEEEEEccCC---CCCceEEEEEE
Q 046711           67 SKYVWKIDNFSKLG-------AGYKESQAFGAG--NHKWKIELHPAGIDIGAADHLSMFLILENFT---VENVQVYAEFT  134 (209)
Q Consensus        67 ~~~~w~I~nfS~l~-------~~~~~S~~F~~g--g~~W~l~vyP~G~~~~~~~~lSlyL~l~~~~---~~~~~~~~~f~  134 (209)
                      ++|+|+|++||.++       ++.+.|+.|.+|  ||+|+|++||+|...+.++||||||++.+++   ...|++.++|+
T Consensus         1 g~~~w~I~~fs~~~~~~~~~~~~~~~S~~F~vg~~G~~w~i~~yP~G~~~~~~~~lsl~L~l~~~~~d~~~~w~~~~~~~   80 (149)
T cd00270           1 GVLIWKIKDYSRKLQEAVAGSNTVLYSPPFYTSRYGYKLCLRLYLNGDGTGKGTHLSLFVHVMKGEYDALLEWPFRGKIT   80 (149)
T ss_pred             CEEEEEECCHHHHHHHHhcCCCceEECCCcccCCCCceEEEEEEeCCCCCCCCCEEEEEEEEeccCCCccccCCccceEE
Confidence            57999999999974       358999999999  9999999999998766678999999998764   46799999999


Q ss_pred             EEEEcCCCC--CccEEEEeeeeccccceeEec-----CCCCCCcccceeeccccCCCCCCeeECCEEEEEEEEE
Q 046711          135 LRIWDQLGQ--SMNLFKVKCVSLHAINKFWFH-----TPKSSWGCPRFVSLSELNDPETGFLVNDVCVVEAEVT  201 (209)
Q Consensus       135 l~ilnq~~~--~~~~~k~~~~~~~~~~~~~F~-----~~~~~wG~~~Fi~~~~L~~~~~gyl~~D~l~i~~~v~  201 (209)
                      |+|+||.++  ..+....  .. +....+.|.     ....+|||.+||++++|++  .|||+||+|+|+|+|.
T Consensus        81 ~~l~d~~~~~~~~~~~~~--~~-~~~~~~~f~~~~~~~~~~~~G~~~fi~~~~L~~--~gfl~dD~l~I~~~v~  149 (149)
T cd00270          81 LTLLDQSDDSKRKHITET--FM-PDPNSSAFQRPPTGENNIGFGYPEFVPLEKLES--RGYVKDDTLFIKVEVD  149 (149)
T ss_pred             EEEECCCCccccCceEEE--EE-cCCchHhhcCCCcccCCCCcCcceEeEHHHhcc--CCCEeCCEEEEEEEEC
Confidence            999999873  3333221  00 000123453     1457899999999999986  5999999999999983

There are at least six mammalian and three Drosophila proteins containing TRAF domains. The mammalian TRAFs display varying expression profiles, indicating independent and cell type-specific regulation. They display distinct, as well as overlapping functions and interactions with receptors. Most TRAFs, except TRAF1, share N-terminal homology and contain a RING domain, multiple zinc finger domains, and a TRAF domain. TRAFs form homo- and heterotrimers through its TRAF domain. The TRAF domain can be divided into a more divergent N-ter

>cd03776 MATH_TRAF6 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF6 subfamily, TRAF domain, C-terminal MATH subdomain; composed of proteins with similarity to human TRAF6, including the Drosophila protein DTRAF2

Probab=99.94  E-value=7.2e-27  Score=178.53  Aligned_cols=130  Identities=24%  Similarity=0.334  Sum_probs=103.2

Q ss_pred             CEEEEEEcCccccC-----CC--eeecccEEe--cCceEEEEEecCCCcCCCCCeEEEEEEEccCC---CCCceEEEEEE
Q 046711           67 SKYVWKIDNFSKLG-----AG--YKESQAFGA--GNHKWKIELHPAGIDIGAADHLSMFLILENFT---VENVQVYAEFT  134 (209)
Q Consensus        67 ~~~~w~I~nfS~l~-----~~--~~~S~~F~~--gg~~W~l~vyP~G~~~~~~~~lSlyL~l~~~~---~~~~~~~~~f~  134 (209)
                      +.|+|+|+|||.++     ++  .+.|++|.+  |||+|+|++||+|...+..+|||+||+|.+++   ...|++.++++
T Consensus         1 g~h~~~I~~yS~~~~~~~~g~~~~i~S~~F~~~~gGy~W~i~~yP~G~~~~~~~~lS~~L~l~~~~~d~~l~wpv~a~~~   80 (147)
T cd03776           1 GIYVWKIKNFSNLRRSMEAGSPVVIHSPGFYTSPPGYKLCARLNLSLPEARCPNYISLFVHLMQGENDSHLDWPFQGTIT   80 (147)
T ss_pred             CEEEEEECCHHHHHHHHhcCCCceEECCCcccCCCCceEEEEEEeCCCCCCCCCEEEEEEEEeccCCCcccCCcccceeE
Confidence            57999999999764     34  488999985  79999999999999877789999999998754   45799999999


Q ss_pred             EEEEcCCCCCccEEEEeeeeccccceeEecC-----CCCCCcccceeeccccCCCCCCeeECCEEEEEEEEE
Q 046711          135 LRIWDQLGQSMNLFKVKCVSLHAINKFWFHT-----PKSSWGCPRFVSLSELNDPETGFLVNDVCVVEAEVT  201 (209)
Q Consensus       135 l~ilnq~~~~~~~~k~~~~~~~~~~~~~F~~-----~~~~wG~~~Fi~~~~L~~~~~gyl~~D~l~i~~~v~  201 (209)
                      |+|+||.++..++...  .. +......|..     .+.+|||.+||++++|+.  .+||+||+|+|+|+|.
T Consensus        81 ~~lldq~~~~~~~~~~--~~-~~~~~~~F~~p~~~~~~~~~G~~~fi~~~~Le~--~~yl~dD~l~I~c~V~  147 (147)
T cd03776          81 LTLLDQSEPRQNIHET--MM-SKPELLAFQRPTTDRNPKGFGYVEFAHIEDLLQ--RGFVKNDTLLIKIEVN  147 (147)
T ss_pred             EEEECCCcccCccEEE--EE-cCCChHhhcCCCcCCCCCCeeEceeeEHHHhhh--CCCccCCEEEEEEEEC
Confidence            9999998754443221  00 0012345652     346899999999999986  6899999999999984

TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF6 is the most divergent in its TRAF domain among the mammalian TRAFs. In addition to mediating TNFR family signaling, it is also an essential signaling molecule of the interleukin-1/Toll-like receptor superfamily. Whereas other TRAF molecules display similar and overlapping TNFR-binding specificities, TRAF6 binds completely different sites on receptors such as CD40 and RANK. TRAF6 serves as a molecular bridge between innate and adaptive immunity and plays a central role in osteoimmunology. DTRAF2, as an activator of nuclear factor-kapp

>cd03777 MATH_TRAF3 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF3 subfamily, TRAF domain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses

Probab=99.94  E-value=5.6e-26  Score=179.24  Aligned_cols=133  Identities=23%  Similarity=0.332  Sum_probs=108.7

Q ss_pred             CCCCEEEEEEcCccccC-----CC--eeecccEEec--CceEEEEEecCCCcCCCCCeEEEEEEEccCC---CCCceEEE
Q 046711           64 AYSSKYVWKIDNFSKLG-----AG--YKESQAFGAG--NHKWKIELHPAGIDIGAADHLSMFLILENFT---VENVQVYA  131 (209)
Q Consensus        64 ~~~~~~~w~I~nfS~l~-----~~--~~~S~~F~~g--g~~W~l~vyP~G~~~~~~~~lSlyL~l~~~~---~~~~~~~~  131 (209)
                      ..++.|.|+|+|||.++     ++  .+.|++|.+|  ||+|+|++||+|.+.+.++|+|+||++.+++   ...|++.+
T Consensus        36 ~~~G~hvwkI~~yS~~~~~~~~g~~~~i~S~~Fyvg~~GY~w~i~~ypnG~g~~~~~~iSvyl~L~~ge~D~~L~WP~~~  115 (186)
T cd03777          36 SYNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFVIMRGEYDALLPWPFKQ  115 (186)
T ss_pred             ccceEEEEEECChhHHHHhhccCCCcEEECCCeEeCCCCeeEEEEEEcCCCCCCCCCEEEEEEEEecCCcccccCCceeE
Confidence            45799999999999874     34  7999999999  9999999999999987889999999999865   45899999


Q ss_pred             EEEEEEEcCCCCCccEEEEeeeeccccceeEecC-C---CCCCcccceeeccccCCCCCCeeECCEEEEEEEEE
Q 046711          132 EFTLRIWDQLGQSMNLFKVKCVSLHAINKFWFHT-P---KSSWGCPRFVSLSELNDPETGFLVNDVCVVEAEVT  201 (209)
Q Consensus       132 ~f~l~ilnq~~~~~~~~k~~~~~~~~~~~~~F~~-~---~~~wG~~~Fi~~~~L~~~~~gyl~~D~l~i~~~v~  201 (209)
                      +++|.|+||.+...++...  + .+.+....|.. .   +.+||+++||++++|+.  .+||+||+++|+|.|.
T Consensus       116 ~~tfsLlDQ~~~~~~~~~~--~-~p~p~~~~F~rp~~~~n~~~G~~~Fi~~~~Le~--~~ylkdD~l~Irv~v~  184 (186)
T cd03777         116 KVTLMLMDQGSSRRHLGDA--F-KPDPNSSSFKKPTGEMNIASGCPVFVAQTVLEN--GTYIKDDTIFIKVIVD  184 (186)
T ss_pred             EEEEEEEcCCCccccccce--e-ccCCccccccCCccCCCCCCCchheeEHHHhcc--CCcEeCCEEEEEEEEe
Confidence            9999999997644444222  1 11112345752 2   45799999999999986  7999999999999885

TRAF3 was first described as a molecule that binds the cytoplasmic tail of CD40. However, it is not required for CD40 signaling. More recently, TRAF3 has been identified as a key regulator of type I interferon (IFN) production and the mammalian innate antiviral immunity. It mediates IFN responses in Toll-like receptor (TLR)-dependent as well as TLR-independent viral recognition pathways. It is also a key element in immunological homeostasis through its regulation of the anti-inflammatory cytokine interleukin-10. TRAF3 contains a RING finger domain, five zinc finger domains, and a TRAF domain. The TRAF domain can be divided into a more divergent N-terminal al

>cd03779 MATH_TRAF1 Tumor Necrosis Factor Receptor (TNFR) Associated Factor (TRAF) family, TRAF1 subfamily, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses

Probab=99.94  E-value=8.7e-26  Score=171.71  Aligned_cols=130  Identities=21%  Similarity=0.333  Sum_probs=103.0

Q ss_pred             CEEEEEEcCccccC-----C--CeeecccEEec--CceEEEEEecCCCcCCCCCeEEEEEEEccCC---CCCceEEEEEE
Q 046711           67 SKYVWKIDNFSKLG-----A--GYKESQAFGAG--NHKWKIELHPAGIDIGAADHLSMFLILENFT---VENVQVYAEFT  134 (209)
Q Consensus        67 ~~~~w~I~nfS~l~-----~--~~~~S~~F~~g--g~~W~l~vyP~G~~~~~~~~lSlyL~l~~~~---~~~~~~~~~f~  134 (209)
                      +.+.|+|+||+++.     +  ..++||.|..+  ||+|+|++||+|.+.+.++|+|+||++.+++   ...|++.++++
T Consensus         1 g~~~W~i~~f~~~~~~a~~~~~~~~~S~~Fyt~~~Gy~w~i~~ypnG~~~~~~~~iSv~l~l~~g~~D~~l~wpv~~~~t   80 (147)
T cd03779           1 GTFLWKITDVSQKQRESSHGRDVSLCSPAFYTAKYGYKVCLRLYLNGDGAGKGTHISLFFVIMKGEYDALLPWPFRHKVT   80 (147)
T ss_pred             CeEEEEECcHHHHHHHHhcCCCceEECCCcccCCCCceEEEEEEcCCCCCCCCCEEEEEEEEecCCcccccCcceEEEEE
Confidence            57899999999753     2  37999999865  9999999999999987789999999999864   45899999999


Q ss_pred             EEEEcCCCCCccEEEEeeeeccccceeEec----CCCCCCcccceeeccccCCCCCCeeECCEEEEEEEE
Q 046711          135 LRIWDQLGQSMNLFKVKCVSLHAINKFWFH----TPKSSWGCPRFVSLSELNDPETGFLVNDVCVVEAEV  200 (209)
Q Consensus       135 l~ilnq~~~~~~~~k~~~~~~~~~~~~~F~----~~~~~wG~~~Fi~~~~L~~~~~gyl~~D~l~i~~~v  200 (209)
                      |+|+||.+. .+....  . .++...+.|.    ..+..||+++||++++|+....+||+||+++|+|+|
T Consensus        81 fsLlDq~~~-~~~~~~--~-~~~~~~~~F~rP~~~~n~~~G~~~Fi~~~~Le~s~~~ylkDD~~~Irc~V  146 (147)
T cd03779          81 FMLLDQNNR-EHVIDA--F-RPDLSSASFQRPVSDMNVASGCPLFFPLKKLQSPKHAYCKDDTIYIKCVV  146 (147)
T ss_pred             EEEECCCCC-CCCcEe--e-cCCcccccccCcccCCCCCcchhheeEHHHhcccCCCcEeCCEEEEEEEE
Confidence            999999863 332211  1 1111135686    345679999999999998632499999999999998

TRAF1 expression is the most restricted among the TRAFs. It is found exclusively in activated lymphocytes, dendritic cells and certain epithelia. TRAF1 associates, directly or indirectly through heterodimerization with TRAF2, with the TNFR family receptors TNFR-2, CD30, RANK, CD40 and LMP1, among others. It also binds the intracellular proteins TRADD, TANK, TRIP, RIP1, RIP2 and FLIP. TRAF1 is unique among the TRAFs in that it lacks a RING domain, which is critical for the activation of nuclear factor-kappaB and Jun NH2-terminal kinase. Studies on TRAF1-deficient mice suggest that TRAF1 has a negative regulatory role in TNFR-mediat

>cd03778 MATH_TRAF2 Tumor Necrosis Factor Receptor (TNFR) Associated Factor (TRAF) family, TRAF2 subfamily, TRAF domain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses

Probab=99.93  E-value=1.5e-25  Score=172.47  Aligned_cols=132  Identities=21%  Similarity=0.330  Sum_probs=108.8

Q ss_pred             CCCCEEEEEEcCccccC-------CCeeecccEEe--cCceEEEEEecCCCcCCCCCeEEEEEEEccCC---CCCceEEE
Q 046711           64 AYSSKYVWKIDNFSKLG-------AGYKESQAFGA--GNHKWKIELHPAGIDIGAADHLSMFLILENFT---VENVQVYA  131 (209)
Q Consensus        64 ~~~~~~~w~I~nfS~l~-------~~~~~S~~F~~--gg~~W~l~vyP~G~~~~~~~~lSlyL~l~~~~---~~~~~~~~  131 (209)
                      ...+.|+|+|+|||++.       ...++||.|..  +||+|+|++||+|++.+++.|||||+++++++   ...|++..
T Consensus        16 ~~~g~fiWkI~~fs~~~~~a~~~~~~~i~Sp~Fyt~~~GYk~~l~~ylnG~g~~~g~~LSly~~l~~Ge~D~~L~WPf~~   95 (164)
T cd03778          16 TYDGVFIWKISDFARKRQEAVAGRIPAIFSPAFYTSRYGYKMCLRIYLNGDGTGRGTHLSLFFVVMKGPNDALLRWPFNQ   95 (164)
T ss_pred             ccCCEEEEEECcHHHHHHHHhcCCCceEECCCcccCCCCeEEEEEEEeCCCCCCCCCEEEEEEEEecCCcCcccCCceee
Confidence            45799999999999975       23789999975  59999999999999988899999999999988   58999999


Q ss_pred             EEEEEEEcCCCCCccEEEEeeeeccccceeEec----CCCCCCcccceeeccccCCCCCCeeECCEEEEEEEE
Q 046711          132 EFTLRIWDQLGQSMNLFKVKCVSLHAINKFWFH----TPKSSWGCPRFVSLSELNDPETGFLVNDVCVVEAEV  200 (209)
Q Consensus       132 ~f~l~ilnq~~~~~~~~k~~~~~~~~~~~~~F~----~~~~~wG~~~Fi~~~~L~~~~~gyl~~D~l~i~~~v  200 (209)
                      +++|+|+||++ +.|+...   ..+++....|.    ..+.+|||++|+++++|..+ .+||+||+|.|+|.|
T Consensus        96 ~itl~llDQ~~-r~hi~~~---~~pd~~~~~f~RP~~~~n~~~G~~~Fv~l~~l~~~-~~Yv~dDtlfIk~~V  163 (164)
T cd03778          96 KVTLMLLDQNN-REHVIDA---FRPDVTSSSFQRPVNDMNIASGCPLFCPVSKXEAK-NSYVRDDAIFIKAIV  163 (164)
T ss_pred             EEEEEEECCCC-CCcceeE---EEcCcchHhcCCCCcccccCcCcceEEEhhHcccc-CCcccCCeEEEEEEE
Confidence            99999999986 6777644   11111222352    23567999999999999864 599999999999987

TRAF2 associates with the receptors TNFR-1, TNFR-2, RANK (which mediates differentiation and maturation of osteoclasts) and CD40 (which is important for the proliferation and activation of B cells), among others. It regulates distinct pathways that lead to the activation of nuclear factor-kappaB and Jun NH2-terminal kinases. TRAF2 also indirectly associates with death receptors through its interaction with TRADD (TNFR-associated death domain protein). It is involved in regulating oxidative stress or ROS-induced cell death and in the preconditioning of cells by sublethal stress for protection from subsequent injury. TRAF2 contains a RING finger domain, five z

>cd03781 MATH_TRAF4 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF4 subfamily, TRAF domain, C-terminal MATH subdomain; composed of proteins with similarity to human TRAF4, including the Drosophila protein DTRAF1

Probab=99.93  E-value=1.8e-25  Score=172.06  Aligned_cols=130  Identities=19%  Similarity=0.279  Sum_probs=103.5

Q ss_pred             CEEEEEEcCccccC-------CCeeecccEEec--CceEEEEEecCCCcCCCCCeEEEEEEEccCC---CCCceEEEEEE
Q 046711           67 SKYVWKIDNFSKLG-------AGYKESQAFGAG--NHKWKIELHPAGIDIGAADHLSMFLILENFT---VENVQVYAEFT  134 (209)
Q Consensus        67 ~~~~w~I~nfS~l~-------~~~~~S~~F~~g--g~~W~l~vyP~G~~~~~~~~lSlyL~l~~~~---~~~~~~~~~f~  134 (209)
                      +.|.|+|++||.++       +..+.|+.|.+|  ||+|+|++||+|...+..+|||+||+|.+++   ...|++.++++
T Consensus         1 g~~~~~I~gys~~~~~~~~~~~~~i~S~~F~vg~~Gy~w~i~~yPnG~~~~~~~~vs~~l~l~~ge~d~~l~wp~~a~~~   80 (154)
T cd03781           1 GTLLWKITDYSRKLQEAKGRDNLELFSPPFYTHRYGYKLQVSAFLNGNGSGEGSHLSVYIRVLPGEYDNLLEWPFSHRIT   80 (154)
T ss_pred             CEEEEEECCHHHHHHHhhcCCCceEECCCeecCCCCEEEEEEEECCCCCCCCCCEEEEEEEEecCCcccccCCceeeEEE
Confidence            57999999999875       358999999999  9999999999999877789999999999865   25899999999


Q ss_pred             EEEEcCCCC--C--ccEEEEeeeeccccceeEecC--------CCCCCcccceeeccccCCCCCCeeECCEEEEEEEEE
Q 046711          135 LRIWDQLGQ--S--MNLFKVKCVSLHAINKFWFHT--------PKSSWGCPRFVSLSELNDPETGFLVNDVCVVEAEVT  201 (209)
Q Consensus       135 l~ilnq~~~--~--~~~~k~~~~~~~~~~~~~F~~--------~~~~wG~~~Fi~~~~L~~~~~gyl~~D~l~i~~~v~  201 (209)
                      |+|+||.+.  .  .++...  ++. ......|..        .+.+||+.+||++++|+.  .+||+||+|+|+|+|.
T Consensus        81 ~~llDq~~~~~~~~~~~~~~--~~~-~~~~~~F~rp~~~~~~~~~~~~G~~~fi~~~~Le~--~~yl~dD~l~Irc~v~  154 (154)
T cd03781          81 FTLLDQSDPSLSKPQHITET--FTP-DPTWKNFQKPSASRLDESTLGFGYPKFISHEDLKK--RNYIKDDAIFLRASVE  154 (154)
T ss_pred             EEEECCCCCccccCcceEEE--EEc-CCchhhhcCCcccccCCCCCccchhHeeEHHHHhh--CCcccCCEEEEEEEeC
Confidence            999999863  1  122111  110 012334542        346799999999999986  7899999999999973

TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF4 is highly expressed during embryogenesis, especially in the central and peripheral nervous system. Studies using TRAF4-deficient mice show that TRAF4 is required for neurogenesis, as well as the development of the trachea and the axial skeleton. In addition, TRAF4 augments nuclear factor-kappaB activation triggered by GITR (glucocorticoid-induced TNFR), a receptor expressed in T-cells, B-cells and macrophages. It also participates in counteracting the signaling mediated by Toll-like receptors through its association with TRAF6 and TR

>cd03771 MATH_Meprin Meprin family, MATH domain; Meprins are multidomain, highly glycosylated extracellular metalloproteases, which are either anchored to the membrane or secreted into extracellular spaces

Probab=99.93  E-value=1.8e-25  Score=173.05  Aligned_cols=131  Identities=20%  Similarity=0.254  Sum_probs=101.6

Q ss_pred             CCEEEEEEcCccccC-----CCeeecccE-EecCceEEEEEecCCCcCCCCCeEEEEEEEccCC---CCCce-EEEEEEE
Q 046711           66 SSKYVWKIDNFSKLG-----AGYKESQAF-GAGNHKWKIELHPAGIDIGAADHLSMFLILENFT---VENVQ-VYAEFTL  135 (209)
Q Consensus        66 ~~~~~w~I~nfS~l~-----~~~~~S~~F-~~gg~~W~l~vyP~G~~~~~~~~lSlyL~l~~~~---~~~~~-~~~~f~l  135 (209)
                      +++|+|+|+|||.++     +..+.|++| .+|||+|+|++||+|... .++||||||++.+++   ...|+ +.++++|
T Consensus         1 cp~hvwkI~~yS~~~~~~~~g~~i~S~~FysvgGy~w~I~~YPnG~~~-~~~~lSlyL~L~~g~~d~~L~WP~v~a~~t~   79 (167)
T cd03771           1 CPEAVWRVRNFSQLLETTPKGTKIYSPRFYSPEGYAFQVGLYPNGTES-YPGYTGLYFHLCSGENDDVLEWPCPNRQATM   79 (167)
T ss_pred             CCeEEEEEcCchhhhhcCCCCCEEECCCCCccCCeEEEEEEEeCCCCC-CCCcceEEEEEecCCccccccCcceeEEEEE
Confidence            468999999999985     458999998 899999999999999987 789999999998765   56899 5899999


Q ss_pred             EEEcCCC---CCccEEEEeeeecccc----------------ceeEecC-------CCCCCcccceeeccccCCCCCCee
Q 046711          136 RIWDQLG---QSMNLFKVKCVSLHAI----------------NKFWFHT-------PKSSWGCPRFVSLSELNDPETGFL  189 (209)
Q Consensus       136 ~ilnq~~---~~~~~~k~~~~~~~~~----------------~~~~F~~-------~~~~wG~~~Fi~~~~L~~~~~gyl  189 (209)
                      +|+||..   ++.|...  +++..+.                ...+...       .+.+|||++||++++|+.  .+||
T Consensus        80 ~LlDQ~~~~~~r~~~~~--~~~~dp~~~~~~~~~~~~~rP~~~~~~~~~~~~~~~~~~~g~G~~~Fis~~~L~~--r~yl  155 (167)
T cd03771          80 TLLDQDPDIQQRMSNQR--SFTTDPSMTSSDNGEYFWDRPSKVGSYDTDTNGCTCYRGPGYGWSTFISHSRLRR--RDFL  155 (167)
T ss_pred             EEECCCCcccccCcceE--EEecCCcccccccccccccCCccccccccccccccccccCccccccceeHHHhcc--CCCC
Confidence            9999974   1223322  1111110                0011221       345899999999999997  6799


Q ss_pred             ECCEEEEEEEEE
Q 046711          190 VNDVCVVEAEVT  201 (209)
Q Consensus       190 ~~D~l~i~~~v~  201 (209)
                      +||+|.|+++++
T Consensus       156 k~dtl~i~~~~~  167 (167)
T cd03771         156 KGDDLIILLDFE  167 (167)
T ss_pred             cCCEEEEEEEeC
Confidence            999999999873

They are expressed in renal and intestinal brush border membranes, leukocytes, and cancer cells, and are capable of cleaving growth factors, cytokines, extracellular matrix proteins, and biologically active peptides. Meprin proteases are composed of two related subunits, alpha and beta, which form homo- or hetro-complexes where the basic unit is a disulfide-linked dimer. Despite their similarity, the two subunits differ in their ability to self-associate, in proteolytic processing during biosynthesis and in substrate specificity. Both subunits are synthesized as membrane spanning proteins, however, the alpha subunit is cleaved during biosynthesis and loses its transmembrane domain. Meprin beta forms homodimers or heterotetramers while meprin alpha oligomerizes into large complexes co

>cd00121 MATH MATH (meprin and TRAF-C homology) domain; an independent folding unit with an eight-stranded beta-sandwich structure found in meprins, TRAFs and other proteins

Probab=99.92  E-value=4.3e-24  Score=156.67  Aligned_cols=123  Identities=38%  Similarity=0.604  Sum_probs=103.4

Q ss_pred             CEEEEEEcCccccCCCeeecccEEecCceEEEEEecCCCcCCCCCeEEEEEEEccCC--CCCceEEEEEEEEEEcCCCCC
Q 046711           67 SKYVWKIDNFSKLGAGYKESQAFGAGNHKWKIELHPAGIDIGAADHLSMFLILENFT--VENVQVYAEFTLRIWDQLGQS  144 (209)
Q Consensus        67 ~~~~w~I~nfS~l~~~~~~S~~F~~gg~~W~l~vyP~G~~~~~~~~lSlyL~l~~~~--~~~~~~~~~f~l~ilnq~~~~  144 (209)
                      ++|+|+|.+|+...++.++|+.|.++|++|+|.+||+|... ..++||+||+|.+..  ...|++.++++|+|+||++ .
T Consensus         1 ~~~~~~i~~~~~~~~~~~~S~~f~~~g~~W~l~~~p~~~~~-~~~~lsv~L~~~~~~~~~~~~~~~~~~~~~l~~~~~-~   78 (126)
T cd00121           1 GKHTWKIVNFSELEGESIYSPPFEVGGYKWRIRIYPNGDGE-SGDYLSLYLELDKGESDLEKWSVRAEFTLKLVNQNG-G   78 (126)
T ss_pred             CEEEEEECCCCCCCCcEEECCCEEEcCEeEEEEEEcCCCCC-CCCEEEEEEEecCCCCCCCCCcEEEEEEEEEECCCC-C
Confidence            36899999999966889999999999999999999999765 568999999998764  3579999999999999984 4


Q ss_pred             ccEEEEeeeeccccceeEec-CCCCCCcccceeeccccCCCCCCeeECCEEEEEEEEE
Q 046711          145 MNLFKVKCVSLHAINKFWFH-TPKSSWGCPRFVSLSELNDPETGFLVNDVCVVEAEVT  201 (209)
Q Consensus       145 ~~~~k~~~~~~~~~~~~~F~-~~~~~wG~~~Fi~~~~L~~~~~gyl~~D~l~i~~~v~  201 (209)
                      ++..+.        ....|. ....+|||.+||++++|++  ..+++||+|+|+|+|.
T Consensus        79 ~~~~~~--------~~~~~~~~~~~~~G~~~fi~~~~l~~--~~~~~~d~l~i~~~v~  126 (126)
T cd00121          79 KSLSKS--------FTHVFFSEKGSGWGFPKFISWDDLED--SYYLVDDSLTIEVEVK  126 (126)
T ss_pred             ccceEe--------ccCCcCCCCCCCCChHHeeEHHHhcc--CCcEECCEEEEEEEEC
Confidence            455454        444553 4578999999999999997  3449999999999984

Meprins comprise a class of extracellular metalloproteases which are anchored to the membrane and are capable of cleaving growth factors, extracellular matrix proteins, and biologically active peptides. TRAF molecules serve as adapter proteins that link cell surface receptors of the Tumor Necrosis Factor and 1nterleukin-1/Toll-like families to downstream kinase cascades, which results in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses in the immune and inflammatory systems. Other members include the ubiquitin ligases, TRIM37 and SPOP, and the ubiquitin-specific proteases, HAUSP and Ubp21p. A large number of uncharacterized members mostly from lineage-specific expansions in C. elegans and rice contain MATH and BTB domains, similar to SPOP. The MATH doma

>PF00917 MATH: MATH domain; InterPro: IPR002083 Although apparently functionally unrelated, intracellular TRAFs and extracellular meprins share a conserved region of about 180 residues, the meprin and TRAF homology (MATH) domain []

Probab=99.88  E-value=9.4e-23  Score=149.09  Aligned_cols=113  Identities=35%  Similarity=0.590  Sum_probs=93.9

Q ss_pred             EcCccccC-C-CeeecccEEecCceEEEEEecCCCcCCCCCeEEEEEEEccCC--C-CCceEEEEEEEEEEcCCCCCccE
Q 046711           73 IDNFSKLG-A-GYKESQAFGAGNHKWKIELHPAGIDIGAADHLSMFLILENFT--V-ENVQVYAEFTLRIWDQLGQSMNL  147 (209)
Q Consensus        73 I~nfS~l~-~-~~~~S~~F~~gg~~W~l~vyP~G~~~~~~~~lSlyL~l~~~~--~-~~~~~~~~f~l~ilnq~~~~~~~  147 (209)
                      |+|||+++ + ..+.|+.|.++|++|+|.+||+|+    +++|++||+|..++  . ..|++.++++++|+++.++ . .
T Consensus         1 i~nfs~l~~~~~~~~s~~~~~~g~~W~l~~~~~~~----~~~l~~~L~~~~~~~~~~~~w~~~~~~~~~~~~~~~~-~-~   74 (119)
T PF00917_consen    1 IKNFSKLKEGEEYSSSFVFSHGGYPWRLKVYPKGN----GKYLSVYLHCDKGENDSDLEWSIEAEFRFRLLNQNGK-S-I   74 (119)
T ss_dssp             ETTGGGHHTSEEEEEEEESSTTSEEEEEEEETTES----TTEEEEEEEEECSTTGGGSSSSEEEEEEEEEE-TTSC-E-E
T ss_pred             CcccceEeCCCcEECCCeEEECCEEEEEEEEeCCC----cCcEEEEEEEeecccccccceeeeEEEEEEEecCCCC-c-c
Confidence            78999997 3 344558888999999999999986    58999999999876  2 5899999999999999984 3 2


Q ss_pred             EEEeeeeccccc-eeEecCCCCCCcccceeeccccCCCCCCeeECCEEEEEEEEEE
Q 046711          148 FKVKCVSLHAIN-KFWFHTPKSSWGCPRFVSLSELNDPETGFLVNDVCVVEAEVTV  202 (209)
Q Consensus       148 ~k~~~~~~~~~~-~~~F~~~~~~wG~~~Fi~~~~L~~~~~gyl~~D~l~i~~~v~v  202 (209)
                      .+.        . .+.|.. ..+|||.+||++++|.++  .|++||+|+|+|+|+|
T Consensus        75 ~~~--------~~~~~F~~-~~~~g~~~fi~~~~l~~~--~fl~dd~l~ie~~v~I  119 (119)
T PF00917_consen   75 SKR--------IKSHSFNN-PSSWGWSSFISWEDLEDP--YFLVDDSLTIEVEVKI  119 (119)
T ss_dssp             EEE--------EECEEECT-TSEEEEEEEEEHHHHTTC--TTSBTTEEEEEEEEEE
T ss_pred             eee--------eeeeEEee-ecccchhheeEHHHhCcc--CCeECCEEEEEEEEEC
Confidence            233        2 377874 589999999999999974  3899999999999987

Meprins are mammalian tissue-specific metalloendopeptidases of the astacin family implicated in developmental, normal and pathological processes by hydrolysing a variety of proteins. Various growth factors, cytokines, and extracellular matrix proteins are substrates for meprins. They are composed of five structural domains: an N-terminal endopeptidase domain, a MAM domain (see PDOC00604 from PROSITEDOC), a MATH domain, an EGF-like domain (see PDOC00021 from PROSITEDOC) and a C-terminal transmembrane region. Meprin A and B form membrane bound homotetramer whereas homooligomers of meprin A are secreted. A proteolitic site adjacent to the MATH domain, only present in meprin A, allows the release of the protein from the membrane []. TRAF proteins were first isolated by their ability to interact with TNF receptors []. They promote cell survival by the activation of downstream protein kinases and, finally, transcription factors of the NF-kB and AP-1 family. The TRAF proteins are composed of 3 structural domains: a RING finger (see PDOC00449 from PROSITEDOC) in the N-terminal part of the protein, one to seven TRAF zinc fingers (see PDOC50145 from PROSITEDOC) in the middle and the MATH domain in the C-terminal part []. The MATH domain is necessary and sufficient for self-association and receptor interaction. From the structural analysis two consensus sequence recognised by the TRAF domain have been defined: a major one, [PSAT]x[QE]E and a minor one, PxQxxD []. The structure of the TRAF2 protein reveals a trimeric self-association of the MATH domain []. The domain forms a new, light-stranded antiparallel beta sandwich structure. A coiled-coil region adjacent to the MATH domain is also important for the trimerisation. The oligomerisation is essential for establishing appropriate connections to form signalling complexes with TNF receptor-1. The ligand binding surface of TRAF proteins is located in beta-strands 6 and 7 [].; GO: 0005515 protein binding; PDB: 1D00_E 1CZY_A 1D01_F 1CA9_A 1D0J_D 1F3V_B 1CA4_C 1D0A_A 1QSC_C 1CZZ_C ....

>cd03782 MATH_Meprin_Beta Meprin family, Beta subunit, MATH domain; Meprins are multidomain extracellular metalloproteases capable of cleaving growth factors, cytokines, extracellular matrix proteins, and biologically active peptides

Probab=99.84  E-value=1.7e-20  Score=143.42  Aligned_cols=131  Identities=19%  Similarity=0.249  Sum_probs=103.2

Q ss_pred             CCEEEEEEcCccccC-----CCeeecccEEe-cCceEEEEEecCCCcCCCCCeEEEEEEEccCC---CCCceEE-EEEEE
Q 046711           66 SSKYVWKIDNFSKLG-----AGYKESQAFGA-GNHKWKIELHPAGIDIGAADHLSMFLILENFT---VENVQVY-AEFTL  135 (209)
Q Consensus        66 ~~~~~w~I~nfS~l~-----~~~~~S~~F~~-gg~~W~l~vyP~G~~~~~~~~lSlyL~l~~~~---~~~~~~~-~~f~l  135 (209)
                      ++.+.|+|+||+++.     +..++||+|.. .||+.+|++||+|.+.+ +.|||||+++..++   ...|++. .+++|
T Consensus         1 cp~~iWkI~~fs~~~~~~~~~~~i~Sp~FYt~~GYkl~l~~ylnG~g~~-~~~lsl~~~lm~Ge~D~~L~WPf~~~qit~   79 (167)
T cd03782           1 CPEHIWHIRNFTQLLATTPPNGKIYSPPFLSSTGYSFQVGLYLNGTDDY-PGNLAIYLHLTSGPNDDQLQWPCPWQQATM   79 (167)
T ss_pred             CCcEEEEeCcHHHHHHhcCCCceEECCCCcCccCceeEEEEEecCCCCC-CCEEEEEEEEeccCCCccccCCCcCCeEEE
Confidence            357899999999974     46799999964 69999999999999875 68999999999988   7799999 89999


Q ss_pred             EEEcCCC---CCccEEEEeee-eccccce---eEe--cC-----------------CCCCCcccceeeccccCCCCCCee
Q 046711          136 RIWDQLG---QSMNLFKVKCV-SLHAINK---FWF--HT-----------------PKSSWGCPRFVSLSELNDPETGFL  189 (209)
Q Consensus       136 ~ilnq~~---~~~~~~k~~~~-~~~~~~~---~~F--~~-----------------~~~~wG~~~Fi~~~~L~~~~~gyl  189 (209)
                      .|+||+.   .+.|+...  + +.|....   ..|  ..                 ++.++||+.||++++|+.  ..||
T Consensus        80 ~LlDQ~~d~~~r~~~~~~--~t~~P~~~s~~n~~f~w~rP~kvg~~~~~~~~~~~~r~~~~G~~~Fish~~L~~--r~yi  155 (167)
T cd03782          80 MLLDQHPDIRQRMSNQRS--VTTDPNMTSTDSDEYFWDDPRKVGSEVTDTDGSTFYRGPGYGTSAFITHLRLRS--RDFI  155 (167)
T ss_pred             EEEcCCCchhhccceeee--EEecCCcccccCccceecCCcccCcccccccccccccccccCccceeeHHHHhh--cCcc
Confidence            9999974   34454331  1 2221111   134  21                 168899999999999997  8999


Q ss_pred             ECCEEEEEEEEE
Q 046711          190 VNDVCVVEAEVT  201 (209)
Q Consensus       190 ~~D~l~i~~~v~  201 (209)
                      +||++.|-++++
T Consensus       156 kdD~ifi~~~~e  167 (167)
T cd03782         156 KGDDVIFLLTME  167 (167)
T ss_pred             cCCeEEEEEecC
Confidence            999999988763

They are composed of two related subunits, alpha and beta, which form homo- or hetro-complexes where the basic unit is a disulfide-linked dimer. The beta subunit is a type I membrane protein, which forms homodimers or heterotetramers (alpha2beta2 or alpha3beta). Meprin beta shows preference for acidic residues at the P1 and P1' sites of its substrate. Among its best substrates are growth factors and chemokines such as gastrin and osteopontin. Both alpha and beta subunits contain a catalytic astacin (M12 family) protease domain followed by the adhesion or interaction domains MAM, MATH and AM. The MATH and MAM domains provide symmetrical intersubunit disulfide bonds necessary for the dimerization of meprin subunits. The MATH domain may also be required for f

>cd03783 MATH_Meprin_Alpha Meprin family, Alpha subunit, MATH domain; Meprins are multidomain extracellular metalloproteases capable of cleaving growth factors, cytokines, extracellular matrix proteins, and biologically active peptides

Probab=99.83  E-value=3.2e-20  Score=142.53  Aligned_cols=132  Identities=17%  Similarity=0.252  Sum_probs=101.2

Q ss_pred             CCEEEEEEcCccccC-----CCeeecccEEe-cCceEEEEEecCCCcC-CCCCeEEEEEEEccCC---CCCceE-EEEEE
Q 046711           66 SSKYVWKIDNFSKLG-----AGYKESQAFGA-GNHKWKIELHPAGIDI-GAADHLSMFLILENFT---VENVQV-YAEFT  134 (209)
Q Consensus        66 ~~~~~w~I~nfS~l~-----~~~~~S~~F~~-gg~~W~l~vyP~G~~~-~~~~~lSlyL~l~~~~---~~~~~~-~~~f~  134 (209)
                      ++.+.|+|+||+++.     +..++||.|.. .||+.+|++||+|.+. +.+.|||||++++.++   ...|++ .-+++
T Consensus         1 cp~~iWkI~nfs~~~~~a~~~~~i~Sp~Fyt~~GYk~~l~~~lng~~~~~~g~~lSl~~~lm~Ge~D~~L~WP~~~~~it   80 (167)
T cd03783           1 CPNAVWRVRNFSQILENTTKGDVLQSPRFYSPEGYGYGVSLYPLSNESDYSGNYTGLYFHLCSGENDAVLEWPALNRQAI   80 (167)
T ss_pred             CCceeEEECcHHHHHHhCcCCCeEECCCCccCCCceEEEEEEecCCCCCCCCCEEEEEEEEecccCCCcccCCCcCCEEE
Confidence            356899999999864     46799999987 4999999999999874 5688999999999987   779995 57999


Q ss_pred             EEEEcCCC---CCccEEEEeeeecccc-ce------eEecC--------------CCCCCcccceeeccccCCCCCCeeE
Q 046711          135 LRIWDQLG---QSMNLFKVKCVSLHAI-NK------FWFHT--------------PKSSWGCPRFVSLSELNDPETGFLV  190 (209)
Q Consensus       135 l~ilnq~~---~~~~~~k~~~~~~~~~-~~------~~F~~--------------~~~~wG~~~Fi~~~~L~~~~~gyl~  190 (209)
                      |.|+||+.   ++.|+...  ++.... ..      ..|..              .+.++||++||++++|+.  .+||+
T Consensus        81 l~llDQ~~~~~~r~~~~~s--f~~d~~~~~~~~~~~~~f~rP~~~~~~~~~~~~~~~~gfG~~~Fish~~L~~--r~yik  156 (167)
T cd03783          81 ITVLDQDPDVRLRMSSSRS--FTTDKSQTSSAINGTLRWDRPSRVGTYDTSCDCFRGIDFGWSTFISHSQLRR--RSFLK  156 (167)
T ss_pred             EEEEcCCcchhhcccccee--eecCCCcccccccccccccCCcccccccccccccCCcccccccceeHHHHhh--CCccc
Confidence            99999974   23333211  111100 00      01322              356899999999999997  89999


Q ss_pred             CCEEEEEEEEE
Q 046711          191 NDVCVVEAEVT  201 (209)
Q Consensus       191 ~D~l~i~~~v~  201 (209)
                      ||+|.|.++++
T Consensus       157 dDtlfI~~~~~  167 (167)
T cd03783         157 NDDLIIFVDFE  167 (167)
T ss_pred             CCeEEEEEecC
Confidence            99999999863

They are composed of two related subunits, alpha and beta, which form homo- or hetro-complexes where the basic unit is a disulfide-linked dimer. The alpha subunit is synthesized as a membrane spanning protein, however, it is cleaved during biosynthesis and loses its transmembrane domain. It oligomerizes into large complexes, containing 10-100 subunits (dimers that associate noncovalently), which are secreted as latent proteases and can move through extracellular spaces in a nondestructive manner. This allows delivery of the concentrated protease to sites containing activating enzymes, such as sites of inflammation, infection or cancerous growth. Meprin alpha shows preference for small or hydrophobic residues at the P1 and P1' sites of its substrate. Both

>smart00061 MATH meprin and TRAF homology

Probab=99.79  E-value=1.9e-18  Score=121.18  Aligned_cols=91  Identities=26%  Similarity=0.369  Sum_probs=77.7

Q ss_pred             EEEEEcCccccC-CCeeecccEEecCceEEEEEecCCCcCCCCCeEEEEEEEccCC--CCCceEEEEEEEEEEcCCCCCc
Q 046711           69 YVWKIDNFSKLG-AGYKESQAFGAGNHKWKIELHPAGIDIGAADHLSMFLILENFT--VENVQVYAEFTLRIWDQLGQSM  145 (209)
Q Consensus        69 ~~w~I~nfS~l~-~~~~~S~~F~~gg~~W~l~vyP~G~~~~~~~~lSlyL~l~~~~--~~~~~~~~~f~l~ilnq~~~~~  145 (209)
                      ++|+|+||+.+. ++.+.|++|.++|++|+|.+||+      .+|||+||.|.+.+  +.+|++.|+++|+|+||+++ .
T Consensus         2 ~~~~~~~~~~~~~~~~~~S~~f~~~g~~W~i~~~p~------~~~lsl~L~~~~~~~~~~~w~v~a~~~~~l~~~~~~-~   74 (95)
T smart00061        2 LSHTFKNVSRLEEGESYFSPSEEHFNIPWRLKIYRK------NGFLSLYLHCEKEECDSRKWSIEAEFTLKLVSQNGK-S   74 (95)
T ss_pred             ceeEEEchhhcccCceEeCChhEEcCceeEEEEEEc------CCEEEEEEEeCCCcCCCCCeEEEEEEEEEEEeCCCC-E
Confidence            579999999985 78899999999999999999998      58999999998765  34799999999999999974 3


Q ss_pred             cEEEEeeeeccccceeEecCCCCCCccccee
Q 046711          146 NLFKVKCVSLHAINKFWFHTPKSSWGCPRFV  176 (209)
Q Consensus       146 ~~~k~~~~~~~~~~~~~F~~~~~~wG~~~Fi  176 (209)
                      + .+.        ..+.|.. ..+|||.+||
T Consensus        75 ~-~~~--------~~~~F~~-~~~~G~~~fi   95 (95)
T smart00061       75 L-SKK--------DKHVFEK-PSGWGFSKFI   95 (95)
T ss_pred             E-eee--------eeEEEcC-CCccceeeEC
Confidence            3 333        5677875 7889999886

>COG5077 Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]

Probab=99.56  E-value=5.7e-15  Score=133.74  Aligned_cols=131  Identities=27%  Similarity=0.487  Sum_probs=111.1

Q ss_pred             eCCCCEEEEEEcCccccCCCeeecccEEecCceEEEEEecCCCcCCCCCeEEEEEEEccCC----C-CCceEEEEEEEEE
Q 046711           63 YAYSSKYVWKIDNFSKLGAGYKESQAFGAGNHKWKIELHPAGIDIGAADHLSMFLILENFT----V-ENVQVYAEFTLRI  137 (209)
Q Consensus        63 ~~~~~~~~w~I~nfS~l~~~~~~S~~F~~gg~~W~l~vyP~G~~~~~~~~lSlyL~l~~~~----~-~~~~~~~~f~l~i  137 (209)
                      ......++|+|++||++.. .+.||.|.+||+.|+|.++|+|+..   ...|+||.....+    . ..|.+.|+|.|.|
T Consensus        35 e~~~~sftW~vk~wsel~~-k~~Sp~F~vg~~twki~lfPqG~nq---~~~sVyLe~~pqe~e~~~gk~~~ccaqFaf~I  110 (1089)
T COG5077          35 ELLEMSFTWKVKRWSELAK-KVESPPFSVGGHTWKIILFPQGNNQ---CNVSVYLEYEPQELEETGGKYYDCCAQFAFDI  110 (1089)
T ss_pred             HHhhcccceecCChhhhhh-hccCCcccccCeeEEEEEecccCCc---cccEEEEEeccchhhhhcCcchhhhhheeeec
Confidence            4456789999999999975 6889999999999999999999863   3399999998654    2 3499999999999


Q ss_pred             EcCCCCCccEEEEeeeeccccceeEecCCCCCCcccceeeccccCCCCCC---eeECCEEEEEEEEEEEee
Q 046711          138 WDQLGQSMNLFKVKCVSLHAINKFWFHTPKSSWGCPRFVSLSELNDPETG---FLVNDVCVVEAEVTVLGI  205 (209)
Q Consensus       138 lnq~~~~~~~~k~~~~~~~~~~~~~F~~~~~~wG~~~Fi~~~~L~~~~~g---yl~~D~l~i~~~v~v~~~  205 (209)
                      -|+..+......+        +.|+|+....+|||.+|+.+..|..|+.|   |+.+|++.|.|.|.|++.
T Consensus       111 s~p~~pti~~iN~--------sHhrFs~~~tDwGFt~f~dL~kl~~psp~~Ppfleeg~l~ItvyVRvlkd  173 (1089)
T COG5077         111 SNPKYPTIEYINK--------SHHRFSMESTDWGFTNFIDLNKLIEPSPGRPPFLEEGTLVITVYVRVLKD  173 (1089)
T ss_pred             CCCCCCchhhhhc--------ccccccccccccchhhhhhhhhhcCCCCCCCCcccCCeEEEEEEEEEEeC
Confidence            9988765544444        77899988999999999999999887654   678999999999999976

>KOG1987 consensus Speckle-type POZ protein SPOP and related proteins with TRAF, MATH and BTB/POZ domains [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=98.87  E-value=4.1e-08  Score=82.95  Aligned_cols=122  Identities=28%  Similarity=0.465  Sum_probs=97.5

Q ss_pred             EEEEEcCccccCCCeeecccEEecCceEEEEEecCCCcCCCCCeEEEEEEEccCCCCCceEEEEEEEEEEcCCCCCc-cE
Q 046711           69 YVWKIDNFSKLGAGYKESQAFGAGNHKWKIELHPAGIDIGAADHLSMFLILENFTVENVQVYAEFTLRIWDQLGQSM-NL  147 (209)
Q Consensus        69 ~~w~I~nfS~l~~~~~~S~~F~~gg~~W~l~vyP~G~~~~~~~~lSlyL~l~~~~~~~~~~~~~f~l~ilnq~~~~~-~~  147 (209)
                      +.|.+.+|+... ..++|..|..+|..|++.+||.|+      ++++|+.+...  ++|.+++++.|.+.||..... ..
T Consensus         6 ~~~~~~~~~~~~-l~~ys~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~--~~~~~~~~~~l~v~n~~~~~~~~~   76 (297)
T KOG1987|consen    6 FTWVISNFSSVG-LVIYSNGFVKGGCKWRLSAYPKGN------YLSLTLSVSDS--PGWERYAKLRLTVVNQKSEKYLST   76 (297)
T ss_pred             cceeeccCcchh-hhccccceeecCceEEEEEecCCC------EEEEEEEeccC--CCcceeEEEEEEEccCCCcceeee
Confidence            348899998876 678899999999999999999863      79999998874  279999999999999988422 22


Q ss_pred             EEEeeeeccccceeEecCC--CCCCcccceeeccccCCCCCCeeECCEEEEEEEEEEEeeec
Q 046711          148 FKVKCVSLHAINKFWFHTP--KSSWGCPRFVSLSELNDPETGFLVNDVCVVEAEVTVLGISE  207 (209)
Q Consensus       148 ~k~~~~~~~~~~~~~F~~~--~~~wG~~~Fi~~~~L~~~~~gyl~~D~l~i~~~v~v~~~t~  207 (209)
                      ..+        ...+|...  ...||+...++...+.+.+.||++++.+++-+++.|++..+
T Consensus        77 ~~~--------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~V~~~~~  130 (297)
T KOG1987|consen   77 VEE--------GFSWFRFNKVLKEWGFGKMLPLTLLIDCSNGFLVAHKLVLVARSEVFEAMG  130 (297)
T ss_pred             eee--------eEEeccccccccccCcccccChHHhhcccCcEEEcCceEEEeeecceeeec
Confidence            112        33444433  68999999999999999889999998888888877776543

>cd03772 MATH_HAUSP Herpesvirus-associated ubiquitin-specific protease (HAUSP, also known as USP7) family, N-terminal MATH (TRAF-like) domain; composed of proteins similar to human HAUSP, an enzyme that specifically catalyzes the deubiquitylation of p53 and MDM2, hence playing an important role in the p53-MDM2 pathway

Probab=98.64  E-value=3.1e-08  Score=74.48  Aligned_cols=43  Identities=21%  Similarity=0.451  Sum_probs=40.3

Q ss_pred             ceeecCCCcccccccceecccccCCCCCEEEcCeEEEeEEEEE
Q 046711            5 ERRFNGLKLQWGLDQFIPLEAFNDSTNGYLVKDTCVFGAEVFV   47 (209)
Q Consensus         5 ~~~f~~~~~~~G~~~fi~~~~l~~~~~gyl~~d~~~~~~~v~~   47 (209)
                      .|+|+.....|||.+||+|++|.++++|||+||+++|+++|.|
T Consensus        90 ~~~f~~~~~~~G~~~fi~~~~L~~~~sgyl~~D~l~Ie~~V~~  132 (137)
T cd03772          90 SHLFFSKENDWGFSNFMTWSEVTDPEKGFIEDDTITLEVYVQA  132 (137)
T ss_pred             eeEEcCCCCCccchheeEHHHhcCCCCCcEECCEEEEEEEEEe
Confidence            4689888889999999999999999999999999999999998

It contains an N-terminal TRAF-like domain and a C-terminal catalytic protease (C19 family) domain. The tumor suppressor p53 protein is a transcription factor that responds to many cellular stress signals and is regulated primarily through ubiquitylation and subsequent degradation. MDM2 is a RING-finger E3 ubiquitin ligase that promotes p53 ubiquitinylation. p53 and MDM2 bind to the same site in the N-terminal TRAF-like domain of HAUSP in a mutually exclusive manner. HAUSP also interacts with the Epstein-Barr nuclear antigen 1 (EBNA1) protein of the Epstein-Barr virus (EBV), which efficiently immortalizes infected cells predisposing the host to a variety of cancers. EBNA1

>KOG1863 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]

Probab=98.43  E-value=2e-07  Score=91.24  Aligned_cols=131  Identities=21%  Similarity=0.237  Sum_probs=107.0

Q ss_pred             CCEEEEEEcCccccCCCeeecccEEecCceEEEEEecCCCcCCCCCeEEEEEEEccCC-CCCceEEEEEEEEEEcCCCCC
Q 046711           66 SSKYVWKIDNFSKLGAGYKESQAFGAGNHKWKIELHPAGIDIGAADHLSMFLILENFT-VENVQVYAEFTLRIWDQLGQS  144 (209)
Q Consensus        66 ~~~~~w~I~nfS~l~~~~~~S~~F~~gg~~W~l~vyP~G~~~~~~~~lSlyL~l~~~~-~~~~~~~~~f~l~ilnq~~~~  144 (209)
                      ....+|...+...+.. ...|+.|..|+.+|++.+.|+++.   ...++.|+.+.... ...|.+.+++.+.+.|..++.
T Consensus        26 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~s~~~~~~~~v~~~~~~~  101 (1093)
T KOG1863|consen   26 NQSTTIDGIDDKSLLY-RALSSNFGAGATKWKILIAPKVNS---LQSTRKKLEVMPSQSLKSWSCGAQAVLRVKNTIDNL  101 (1093)
T ss_pred             cccccccCcCcchhhh-HhcCccccccccceeeeeccccCc---ccceeEEeeeccCCCCcceEecchhhhccccCCCCc
Confidence            3445566666555555 678999999999999999999983   67899999999764 334999999999999944433


Q ss_pred             ccEEEEeeeeccccceeEecCCCCCCcccceeeccccCCCCCCeeECCEEEEEEEEEEEeeecC
Q 046711          145 MNLFKVKCVSLHAINKFWFHTPKSSWGCPRFVSLSELNDPETGFLVNDVCVVEAEVTVLGISEP  208 (209)
Q Consensus       145 ~~~~k~~~~~~~~~~~~~F~~~~~~wG~~~Fi~~~~L~~~~~gyl~~D~l~i~~~v~v~~~t~~  208 (209)
                      .+..+.        ..|.|.....+||+.+|+.++++.++..||+.+|++.++++|.+...++.
T Consensus       102 ~~~~~~--------~~h~~~~~~~dwg~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~  157 (1093)
T KOG1863|consen  102 PDPEKA--------IHHVFTADERDWGFSCFSTSSDIRKPEDGYVRNGLEKLEKRVRVEQPTSL  157 (1093)
T ss_pred             hhhhhh--------hhhcccccccchhhccchhHhhccCcccccccccceeeeeeeeeecCCcc
Confidence            444444        77889888899999999999999999999999999999999999876653

>cd03775 MATH_Ubp21p Ubiquitin-specific protease 21 (Ubp21p) family, MATH domain; composed of fungal proteins with similarity to Ubp21p of fission yeast

Probab=98.41  E-value=2.3e-07  Score=69.52  Aligned_cols=42  Identities=24%  Similarity=0.463  Sum_probs=38.1

Q ss_pred             cceeecCCCcccccccceecccccCC----CCCEEEcCeEEEeEEE
Q 046711            4 KERRFNGLKLQWGLDQFIPLEAFNDS----TNGYLVKDTCVFGAEV   45 (209)
Q Consensus         4 ~~~~f~~~~~~~G~~~fi~~~~l~~~----~~gyl~~d~~~~~~~v   45 (209)
                      ..|+|+....+|||.+||++++|++|    .+|||+||+++|.|+|
T Consensus        88 ~~~~F~~~~~~wG~~~fi~~~~L~~~~~~~~~g~l~nD~l~I~~~~  133 (134)
T cd03775          88 AHHRFNAEDKDWGFTRFIELRKLAHRTPDKPSPFLENGELNITVYV  133 (134)
T ss_pred             ceeEeCCCCCCCChhHcccHHHHcccccCCCCceeECCEEEEEEEE
Confidence            46899988899999999999999966    6899999999999887

Ubp21p is a deubiquitinating enzyme that may be involved in the regulation of the protein kinase Prp4p, which controls the formation of active spliceosomes. Members of this family are similar to human HAUSP (Herpesvirus-associated ubiquitin-specific protease) in that they contain an N-terminal MATH domain and a C-terminal catalytic protease (C19 family) domain. HAUSP is also an ubiquitin-specific protease that specifically catalyzes the deubiquitylation of p53 and MDM2. The MATH domain of HAUSP contains the binding site for p53 and MDM2. Similarly, the MATH domain of members in this family may be involved in substrate binding.

>cd03774 MATH_SPOP Speckle-type POZ protein (SPOP) family, MATH domain; composed of proteins with similarity to human SPOP

Probab=98.15  E-value=1.2e-06  Score=65.86  Aligned_cols=43  Identities=33%  Similarity=0.512  Sum_probs=38.5

Q ss_pred             cceeecCCCcccccccceecccccCCCCCEEEcCeEEEeEEEEE
Q 046711            4 KERRFNGLKLQWGLDQFIPLEAFNDSTNGYLVKDTCVFGAEVFV   47 (209)
Q Consensus         4 ~~~~f~~~~~~~G~~~fi~~~~l~~~~~gyl~~d~~~~~~~v~~   47 (209)
                      ..++|+. ..+|||.+||++++|.++.+|||.||+++|+++|.|
T Consensus        94 ~~~~f~~-~~~wG~~~fi~~~~L~~~~~g~l~dD~l~I~c~I~V  136 (139)
T cd03774          94 RAYRFVQ-GKDWGFKKFIRRDFLLDEANGLLPDDKLTLFCEVSV  136 (139)
T ss_pred             CcEeCCC-CCccCHHHeeeHHHhhhhhcccccCCEEEEEEEEEE
Confidence            3577875 579999999999999998999999999999999987

SPOP was isolated as a novel antigen recognized by serum from a scleroderma patient, whose overexpression in COS cells results in a discrete speckled pattern in the nuclei. It contains an N-terminal MATH domain and a C-terminal BTB (also called POZ) domain. Together with Cul3, SPOP constitutes an ubiquitin E3 ligase which is able to ubiquitinate the PcG protein BMI1, the variant histone macroH2A1 and the death domain-associated protein Daxx. Therefore, SPOP may be involved in the regulation of these proteins and may play a role in transcriptional regulation, apoptosis and X-chromosome inactivation. Cul3 binds to the BTB domain of SPOP whereas Daxx and the macroH2A1 nonhistone region have been shown to bind to the MATH domain. Both MATH and BTB domains are necessary for the nuclear speckled accumulation of SPOP. There are many proteins, mostly uncharacterized, conta

>PF00917 MATH: MATH domain; InterPro: IPR002083 Although apparently functionally unrelated, intracellular TRAFs and extracellular meprins share a conserved region of about 180 residues, the meprin and TRAF homology (MATH) domain []

Probab=97.86  E-value=8.5e-06  Score=58.83  Aligned_cols=39  Identities=33%  Similarity=0.625  Sum_probs=34.7

Q ss_pred             eeecCCCcccccccceecccccCCCCCEEEcCeEEEeEEEEE
Q 046711            6 RRFNGLKLQWGLDQFIPLEAFNDSTNGYLVKDTCVFGAEVFV   47 (209)
Q Consensus         6 ~~f~~~~~~~G~~~fi~~~~l~~~~~gyl~~d~~~~~~~v~~   47 (209)
                      |+|+.. ..|||.+||+|++|.+|.  |+.||+++|+|+|.|
T Consensus        81 ~~F~~~-~~~g~~~fi~~~~l~~~~--fl~dd~l~ie~~v~I  119 (119)
T PF00917_consen   81 HSFNNP-SSWGWSSFISWEDLEDPY--FLVDDSLTIEVEVKI  119 (119)
T ss_dssp             EEECTT-SEEEEEEEEEHHHHTTCT--TSBTTEEEEEEEEEE
T ss_pred             eEEeee-cccchhheeEHHHhCccC--CeECCEEEEEEEEEC
Confidence            677665 789999999999999766  999999999999976

Meprins are mammalian tissue-specific metalloendopeptidases of the astacin family implicated in developmental, normal and pathological processes by hydrolysing a variety of proteins. Various growth factors, cytokines, and extracellular matrix proteins are substrates for meprins. They are composed of five structural domains: an N-terminal endopeptidase domain, a MAM domain (see PDOC00604 from PROSITEDOC), a MATH domain, an EGF-like domain (see PDOC00021 from PROSITEDOC) and a C-terminal transmembrane region. Meprin A and B form membrane bound homotetramer whereas homooligomers of meprin A are secreted. A proteolitic site adjacent to the MATH domain, only present in meprin A, allows the release of the protein from the membrane []. TRAF proteins were first isolated by their ability to interact with TNF receptors []. They promote cell survival by the activation of downstream protein kinases and, finally, transcription factors of the NF-kB and AP-1 family. The TRAF proteins are composed of 3 structural domains: a RING finger (see PDOC00449 from PROSITEDOC) in the N-terminal part of the protein, one to seven TRAF zinc fingers (see PDOC50145 from PROSITEDOC) in the middle and the MATH domain in the C-terminal part []. The MATH domain is necessary and sufficient for self-association and receptor interaction. From the structural analysis two consensus sequence recognised by the TRAF domain have been defined: a major one, [PSAT]x[QE]E and a minor one, PxQxxD []. The structure of the TRAF2 protein reveals a trimeric self-association of the MATH domain []. The domain forms a new, light-stranded antiparallel beta sandwich structure. A coiled-coil region adjacent to the MATH domain is also important for the trimerisation. The oligomerisation is essential for establishing appropriate connections to form signalling complexes with TNF receptor-1. The ligand binding surface of TRAF proteins is located in beta-strands 6 and 7 [].; GO: 0005515 protein binding; PDB: 1D00_E 1CZY_A 1D01_F 1CA9_A 1D0J_D 1F3V_B 1CA4_C 1D0A_A 1QSC_C 1CZZ_C ....

>KOG1987 consensus Speckle-type POZ protein SPOP and related proteins with TRAF, MATH and BTB/POZ domains [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.79  E-value=9.4e-07  Score=74.63  Aligned_cols=189  Identities=22%  Similarity=0.244  Sum_probs=121.4

Q ss_pred             eeecCCCcccccccceecccccCCCCCEEEcCeEEEeEEEEE-eceeCCccceEEe--------eEeCCC----CEEEEE
Q 046711            6 RRFNGLKLQWGLDQFIPLEAFNDSTNGYLVKDTCVFGAEVFV-KERSRVKGECLSM--------EKYAYS----SKYVWK   72 (209)
Q Consensus         6 ~~f~~~~~~~G~~~fi~~~~l~~~~~gyl~~d~~~~~~~v~~-~~~~~~~~e~~~~--------~~~~~~----~~~~w~   72 (209)
                      .+|+.....||+.+++|+..+.++..||+++..+++-++..| ++.  .+.+....        ..++..    ..|+|.
T Consensus        84 ~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~V~~~~--~~~d~~~~~~~~~~~~d~~~~~~~~~~~F~~~  161 (297)
T KOG1987|consen   84 FRFNKVLKEWGFGKMLPLTLLIDCSNGFLVAHKLVLVARSEVFEAM--GKSDVFKESSKLITLLEEKPEVLEALNGFQVL  161 (297)
T ss_pred             ccccccccccCcccccChHHhhcccCcEEEcCceEEEeeecceeee--cccccchhccccccccccchhhHhhhceEEEe
Confidence            345566899999999999999999999999944444444335 333  33333221        233445    899999


Q ss_pred             EcCccccCC----CeeecccEEecCceEEEEEecCCCcCCCCCeEEEEEEEccCC----CCCceEEEEEEEEEEcCCCC-
Q 046711           73 IDNFSKLGA----GYKESQAFGAGNHKWKIELHPAGIDIGAADHLSMFLILENFT----VENVQVYAEFTLRIWDQLGQ-  143 (209)
Q Consensus        73 I~nfS~l~~----~~~~S~~F~~gg~~W~l~vyP~G~~~~~~~~lSlyL~l~~~~----~~~~~~~~~f~l~ilnq~~~-  143 (209)
                      +.+++..+.    ..+.+..|..++..|++.++|.+.+.....+++.||+..+..    .....+++....+.+|+... 
T Consensus       162 ~s~~~~~~~~~~~~~~~a~~f~~~~~~lk~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ld~l~~~  241 (297)
T KOG1987|consen  162 PSQVSSVERIFEKHPDLAAAFKYKNRHLKLACMPVLLSLIETLNVSQSLQEASNYDLKEAKSALTYVIAAGFKLDWLEKK  241 (297)
T ss_pred             ccchHHHHHhhcCChhhhhccccccHHHHHHHHHHHHHHHHhhhhcccHHHhchhHHHHHHHHHHHHHhccchHhHHHHH
Confidence            999998872    266778999999999999999998765566788888876532    22233444555556676552 


Q ss_pred             CccE-EEEeeeeccccceeEecCCCCCCcccceeeccccCCCCCCeeECCEEEEEEEEEEEe
Q 046711          144 SMNL-FKVKCVSLHAINKFWFHTPKSSWGCPRFVSLSELNDPETGFLVNDVCVVEAEVTVLG  204 (209)
Q Consensus       144 ~~~~-~k~~~~~~~~~~~~~F~~~~~~wG~~~Fi~~~~L~~~~~gyl~~D~l~i~~~v~v~~  204 (209)
                      .++. .+.+       ...+.......+ ..++.++.++.....+++++|++.++++...+.
T Consensus       242 ~~~~~~k~~-------~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  295 (297)
T KOG1987|consen  242 LNEVKEKKK-------KDLWYEIRLQEL-EEELKSLKDKCSDLEGLLVKDKAEVEAESEPLS  295 (297)
T ss_pred             HHHHHHhhh-------HHHHHHHHHHHH-HHHHHhhhhhhhhHHHHHHhhhhhhhcccCCcC
Confidence            1221 1110       011111111222 456777776666566788888888887766553

>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]

Probab=97.46  E-value=9.5e-05  Score=65.07  Aligned_cols=78  Identities=22%  Similarity=0.279  Sum_probs=68.9

Q ss_pred             eCCCCEEEEEEcCccccC-------CCeeecccEEe--cCceEEEEEecCCCcCCCCCeEEEEEEEccCC---CCCceEE
Q 046711           63 YAYSSKYVWKIDNFSKLG-------AGYKESQAFGA--GNHKWKIELHPAGIDIGAADHLSMFLILENFT---VENVQVY  130 (209)
Q Consensus        63 ~~~~~~~~w~I~nfS~l~-------~~~~~S~~F~~--gg~~W~l~vyP~G~~~~~~~~lSlyL~l~~~~---~~~~~~~  130 (209)
                      ....+.+.|+|.+++..+       ...+.|+.|..  .||+.+..+|-+|++.+.+.++|+|+.+..++   ...|+++
T Consensus       276 ~~~~g~~iwki~~~~~~~~e~~~~~~~~~~S~~f~t~~~Gyk~~~~~~lng~g~~~~~~~s~~~~~~~ge~d~~l~wpf~  355 (391)
T KOG0297|consen  276 RSYDGTLIWKIPDYGRKKQEAVAGATLSLFSPAFYTSKYGYKLCARIYLNGDGTGKGTHLSLYFVVMRGEYDALLPWPFR  355 (391)
T ss_pred             hccCCEEEEEecchhhhhHHHHhccCccccccccccccccHHHHhHhhhcCCCCCCcceeeeeeeecccCcccccccCCC
Confidence            346899999999996654       45788998874  69999999999999998899999999999987   6789999


Q ss_pred             EEEEEEEEcC
Q 046711          131 AEFTLRIWDQ  140 (209)
Q Consensus       131 ~~f~l~ilnq  140 (209)
                      -++++.+++|
T Consensus       356 ~~v~~~l~dq  365 (391)
T KOG0297|consen  356 QKVTLMLLDQ  365 (391)
T ss_pred             CceEEEEecc
Confidence            9999999999

>cd03773 MATH_TRIM37 Tripartite motif containing protein 37 (TRIM37) family, MATH domain; TRIM37 is a peroxisomal protein and is a member of the tripartite motif (TRIM) protein subfamily, also known as the RING-B-box-coiled-coil (RBCC) subfamily of zinc-finger proteins

Probab=97.31  E-value=0.0001  Score=54.73  Aligned_cols=39  Identities=28%  Similarity=0.554  Sum_probs=32.5

Q ss_pred             ceeecCCCcccccccceecccccCCCCCEEEc--CeEEEeEEEE
Q 046711            5 ERRFNGLKLQWGLDQFIPLEAFNDSTNGYLVK--DTCVFGAEVF   46 (209)
Q Consensus         5 ~~~f~~~~~~~G~~~fi~~~~l~~~~~gyl~~--d~~~~~~~v~   46 (209)
                      .|+|.. ..+|||.+||++++|.+  +|||.|  |+++|+++|.
T Consensus        90 ~~~f~~-~~~wG~~~Fi~~~~L~~--~gfl~~~~D~l~i~~~v~  130 (132)
T cd03773          90 ASDFEV-GECWGYNRFFRLDLLIN--EGYLLPENDTLILRFSVR  130 (132)
T ss_pred             cccccC-CCCcCHHHhccHHHHhh--CCCcCCCCCEEEEEEEEe
Confidence            466765 46799999999999974  799999  9999888774

Mutations in the human TRIM37 gene (also known as MUL) cause Mulibrey (muscle-liver-brain-eye) nanism, a rare growth disorder of prenatal onset characterized by dysmorphic features, pericardial constriction and hepatomegaly. TRIM37, similar to other TRIMs, contains a cysteine-rich, zinc-binding RING-finger domain followed by another cysteine-rich zinc-binding domain, the B-box, and a coiled-coil domain. TRIM37 is autoubiquitinated in a RING domain-dependent manner, indicating that it functions as an ubiquitin E3 ligase. In addition to the tripartite motif, TRIM37 also contains a MATH domain C-terminal to the coiled-coil domain. The MATH domain of TRIM37 has been shown to interact with the TRAF domain of six known TRAFs i

>cd00121 MATH MATH (meprin and TRAF-C homology) domain; an independent folding unit with an eight-stranded beta-sandwich structure found in meprins, TRAFs and other proteins

Probab=96.94  E-value=0.00074  Score=48.54  Aligned_cols=35  Identities=34%  Similarity=0.590  Sum_probs=30.3

Q ss_pred             CCCcccccccceecccccCCCCCEEEcCeEEEeEEEE
Q 046711           10 GLKLQWGLDQFIPLEAFNDSTNGYLVKDTCVFGAEVF   46 (209)
Q Consensus        10 ~~~~~~G~~~fi~~~~l~~~~~gyl~~d~~~~~~~v~   46 (209)
                      ....+|||.+||++++|.++.  ++.||++.|+++|.
T Consensus        92 ~~~~~~G~~~fi~~~~l~~~~--~~~~d~l~i~~~v~  126 (126)
T cd00121          92 EKGSGWGFPKFISWDDLEDSY--YLVDDSLTIEVEVK  126 (126)
T ss_pred             CCCCCCChHHeeEHHHhccCC--cEECCEEEEEEEEC
Confidence            667899999999999999643  39999999999873

Meprins comprise a class of extracellular metalloproteases which are anchored to the membrane and are capable of cleaving growth factors, extracellular matrix proteins, and biologically active peptides. TRAF molecules serve as adapter proteins that link cell surface receptors of the Tumor Necrosis Factor and 1nterleukin-1/Toll-like families to downstream kinase cascades, which results in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses in the immune and inflammatory systems. Other members include the ubiquitin ligases, TRIM37 and SPOP, and the ubiquitin-specific proteases, HAUSP and Ubp21p. A large number of uncharacterized members mostly from lineage-specific expansions in C. elegans and rice contain MATH and BTB domains, similar to SPOP. The MATH doma

>COG5077 Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]

Probab=95.81  E-value=0.0057  Score=57.17  Aligned_cols=44  Identities=30%  Similarity=0.521  Sum_probs=40.1

Q ss_pred             cceeecCCCcccccccceecccccCCCCC---EEEcCeEEEeEEEEE
Q 046711            4 KERRFNGLKLQWGLDQFIPLEAFNDSTNG---YLVKDTCVFGAEVFV   47 (209)
Q Consensus         4 ~~~~f~~~~~~~G~~~fi~~~~l~~~~~g---yl~~d~~~~~~~v~~   47 (209)
                      ..|||+...++|||++|+.|..+..|+.|   |+.+++++|.|.|.|
T Consensus       124 sHhrFs~~~tDwGFt~f~dL~kl~~psp~~Ppfleeg~l~ItvyVRv  170 (1089)
T COG5077         124 SHHRFSMESTDWGFTNFIDLNKLIEPSPGRPPFLEEGTLVITVYVRV  170 (1089)
T ss_pred             ccccccccccccchhhhhhhhhhcCCCCCCCCcccCCeEEEEEEEEE
Confidence            46999999999999999999999987666   588899999999999

>KOG1863 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]

Probab=94.55  E-value=0.02  Score=56.78  Aligned_cols=47  Identities=17%  Similarity=0.312  Sum_probs=44.3

Q ss_pred             cceeecCCCcccccccceecccccCCCCCEEEcCeEEEeEEEEE-ece
Q 046711            4 KERRFNGLKLQWGLDQFIPLEAFNDSTNGYLVKDTCVFGAEVFV-KER   50 (209)
Q Consensus         4 ~~~~f~~~~~~~G~~~fi~~~~l~~~~~gyl~~d~~~~~~~v~~-~~~   50 (209)
                      ..|+|.....+||+.+|+.++++.+|..||+.+|++.+.++|.+ .++
T Consensus       108 ~~h~~~~~~~dwg~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~  155 (1093)
T KOG1863|consen  108 IHHVFTADERDWGFSCFSTSSDIRKPEDGYVRNGLEKLEKRVRVEQPT  155 (1093)
T ss_pred             hhhcccccccchhhccchhHhhccCcccccccccceeeeeeeeeecCC
Confidence            57999999999999999999999999999999999999999999 554

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	209
2foj_A	155	Ubiquitin carboxyl-terminal hydrolase 7; MATH doma	3e-30
2foj_A	155	Ubiquitin carboxyl-terminal hydrolase 7; MATH doma	7e-06
3ivv_A	145	Speckle-type POZ protein; protein binding, nucleus	1e-29
3ivv_A	145	Speckle-type POZ protein; protein binding, nucleus	6e-05
1ca9_A	192	TRAF2, protein (TNF receptor associated factor 2);	2e-22
1d00_A	168	Tumor necrosis factor receptor associated protein	5e-22
3hqi_A	312	Speckle-type POZ protein; SPOP, ubiquitin, puckere	2e-21
1flk_A	228	TNF receptor associated factor 3; TNF signaling, T	5e-21
2gkw_A	192	TNF receptor-associated factor 3; CD40, NF-KB sign	1e-20
1lb6_A	160	TNF receptor-associated factor 6; TRAF6-CD40 compl	7e-18
2f1z_A	522	Ubiquitin carboxyl-terminal hydrolase 7; hausp, US	7e-16

>2foj_A Ubiquitin carboxyl-terminal hydrolase 7; MATH domain, hydrolase; 1.60A {Homo sapiens} PDB: 1yze_A 1yy6_A 2foo_A 2fop_A 3mqr_A 3mqs_C 2f1w_A 2f1x_A 2f1y_A 2xxn_A Length = 155

 Score =  108 bits (270), Expect = 3e-30
 Identities = 28/144 (19%), Positives = 51/144 (35%), Gaps = 11/144 (7%)

Query: 61  EKYAYSSKYVWKIDNFSKLGAGYKESQAFGAGNHKWKIELHPAGIDIGA-ADHLSMFLIL 119
             +   + + + ++ FS+L      S      N  WKI + P           +  FL  
Sbjct: 13  TSWRSEATFQFTVERFSRLSESVL-SPPCFVRNLPWKIMVMPRFYPDRPHQKSVGFFLQC 71

Query: 120 E-NFTVENVQVYAEFTLRIWDQLGQSMNLFKVKCVSLHAINKFWFHTPKSSWGCPRFVSL 178
                  +   +A+  L+I +      +  +             F   ++ WG   F++ 
Sbjct: 72  NAESDSTSWSCHAQAVLKIINYRDDEKSFSRRIS--------HLFFHKENDWGFSNFMAW 123

Query: 179 SELNDPETGFLVNDVCVVEAEVTV 202
           SE+ DPE GF+ +D    E  V  
Sbjct: 124 SEVTDPEKGFIDDDKVTFEVFVQA 147

>2foj_A Ubiquitin carboxyl-terminal hydrolase 7; MATH domain, hydrolase; 1.60A {Homo sapiens} PDB: 1yze_A 1yy6_A 2foo_A 2fop_A 3mqr_A 3mqs_C 2f1w_A 2f1x_A 2f1y_A 2xxn_A Length = 155

 Score = 43.3 bits (102), Expect = 7e-06
 Identities = 9/43 (20%), Positives = 13/43 (30%)

Query: 7   RFNGLKLQWGLDQFIPLEAFNDSTNGYLVKDTCVFGAEVFVKE 49
            F   +  WG   F+      D   G++  D   F   V    
Sbjct: 107 LFFHKENDWGFSNFMAWSEVTDPEKGFIDDDKVTFEVFVQADA 149

>3ivv_A Speckle-type POZ protein; protein binding, nucleus, UBL conjugation pathway, ligase; 1.25A {Homo sapiens} PDB: 3ivq_A 3ivb_A 3hsv_A 3hqh_A 3hqm_A 3hql_A 2cr2_A Length = 145

 Score =  106 bits (265), Expect = 1e-29
 Identities = 36/146 (24%), Positives = 62/146 (42%), Gaps = 16/146 (10%)

Query: 64  AYSSKYVWKIDNFSKLGAGYKE---SQAFGAGNH---KWKIELHPAGIDIGAADHLSMFL 117
                Y+W I+NFS       E   S  F +G +   KW + ++P G+D  + D+LS++L
Sbjct: 8   VVKFSYMWTINNFSFCREEMGEVIKSSTFSSGANDKLKWCLRVNPKGLDEESKDYLSLYL 67

Query: 118 ILENFTVENVQVYAEFTLRIWDQLGQSMNLFKVKCVSLHAINKFWFHTPKSSWGCPRFVS 177
           +L +      +V A+F   I +  G+                + +       WG  +F+ 
Sbjct: 68  LLVSC--PKSEVRAKFKFSILNAKGEE--------TKAMESQRAYRFVQGKDWGFKKFIR 117

Query: 178 LSELNDPETGFLVNDVCVVEAEVTVL 203
              L D   G L +D   +  EV+V+
Sbjct: 118 RDFLLDEANGLLPDDKLTLFCEVSVV 143

>3ivv_A Speckle-type POZ protein; protein binding, nucleus, UBL conjugation pathway, ligase; 1.25A {Homo sapiens} PDB: 3ivq_A 3ivb_A 3hsv_A 3hqh_A 3hqm_A 3hql_A 2cr2_A Length = 145

 Score = 40.7 bits (95), Expect = 6e-05
 Identities = 12/42 (28%), Positives = 14/42 (33%)

Query: 6   RRFNGLKLQWGLDQFIPLEAFNDSTNGYLVKDTCVFGAEVFV 47
                    WG  +FI  +   D  NG L  D      EV V
Sbjct: 101 AYRFVQGKDWGFKKFIRRDFLLDEANGLLPDDKLTLFCEVSV 142

>1ca9_A TRAF2, protein (TNF receptor associated factor 2); TNF signaling, TRAF, adapter protein, cell surviVal; 2.30A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1qsc_A 1czz_A Length = 192

 Score = 88.9 bits (220), Expect = 2e-22
 Identities = 31/159 (19%), Positives = 65/159 (40%), Gaps = 13/159 (8%)

Query: 59  SMEKYAYSSKYVWKIDNFSKLGAGYKE-------SQAF--GAGNHKWKIELHPAGIDIGA 109
            ME   Y   ++WKI +F++              S AF      +K  + ++  G   G 
Sbjct: 35  EMEASTYDGVFIWKISDFARKRQEAVAGRIPAIFSPAFYTSRYGYKMCLRIYLNGDGTGR 94

Query: 110 ADHLSMFLIL---ENFTVENVQVYAEFTLRIWDQLGQSMNLFKVKCVSLHAINKFWFHTP 166
             HLS+F ++    N  +       + TL + DQ  +   +   +     +  +   +  
Sbjct: 95  GTHLSLFFVVMKGPNDALLRWPFNQKVTLMLLDQNNREHVIDAFRPDVTSSSFQRPVNDM 154

Query: 167 KSSWGCPRFVSLSELNDPETGFLVNDVCVVEAEVTVLGI 205
             + GCP F  +S++ + +  ++ +D   ++A V + G+
Sbjct: 155 NIASGCPLFCPVSKM-EAKNSYVRDDAIFIKAIVDLTGL 192

>1d00_A Tumor necrosis factor receptor associated protein 2; B-sandwich, protein-peptide complex, apoptosis; 2.00A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1ca4_A 1d0j_A 1f3v_B 1czy_A 1d01_A 1d0a_A Length = 168

 Score = 87.4 bits (216), Expect = 5e-22
 Identities = 31/159 (19%), Positives = 65/159 (40%), Gaps = 13/159 (8%)

Query: 59  SMEKYAYSSKYVWKIDNFSKLGAGYKE-------SQAFGAGN--HKWKIELHPAGIDIGA 109
            ME   Y   ++WKI +F++              S AF      +K  + ++  G   G 
Sbjct: 11  EMEASTYDGVFIWKISDFARKRQEAVAGRIPAIFSPAFYTSRYGYKMCLRIYLNGDGTGR 70

Query: 110 ADHLSMFLIL---ENFTVENVQVYAEFTLRIWDQLGQSMNLFKVKCVSLHAINKFWFHTP 166
             HLS+F ++    N  +       + TL + DQ  +   +   +     +  +   +  
Sbjct: 71  GTHLSLFFVVMKGPNDALLRWPFNQKVTLMLLDQNNREHVIDAFRPDVTSSSFQRPVNDM 130

Query: 167 KSSWGCPRFVSLSELNDPETGFLVNDVCVVEAEVTVLGI 205
             + GCP F  +S++ + +  ++ +D   ++A V + G+
Sbjct: 131 NIASGCPLFCPVSKM-EAKNSYVRDDAIFIKAIVDLTGL 168

>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A Length = 312

 Score = 88.8 bits (220), Expect = 2e-21
 Identities = 38/150 (25%), Positives = 66/150 (44%), Gaps = 16/150 (10%)

Query: 66  SSKYVWKIDNFS--KLGAG-YKESQAFGAGNH---KWKIELHPAGIDIGAADHLSMFLIL 119
              Y+W I+NFS  +   G   +S  F +G +   KW + ++P G+D  + D+LS++L+L
Sbjct: 6   KFSYMWTINNFSFCREEMGEVIKSSTFSSGANDKLKWCLRVNPKGLDEESKDYLSLYLLL 65

Query: 120 ENFTVENVQVYAEFTLRIWDQLGQSMNLFKVKCVSLHAINKFWFHTPKSSWGCPRFVSLS 179
            +      +V A+F   I +  G+                + +       WG  +F+   
Sbjct: 66  VS--CPKSEVRAKFKFSILNAKGEE--------TKAMESQRAYRFVQGKDWGFKKFIRRG 115

Query: 180 ELNDPETGFLVNDVCVVEAEVTVLGISEPI 209
            L D   G L +D   +  EV+V+  S  I
Sbjct: 116 FLLDEANGLLPDDKLTLFCEVSVVQDSVNI 145

>1flk_A TNF receptor associated factor 3; TNF signaling, TRAF3, CD40-binding protein, apoptosis; 2.80A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1fll_A Length = 228

 Score = 86.3 bits (213), Expect = 5e-21
 Identities = 31/164 (18%), Positives = 62/164 (37%), Gaps = 17/164 (10%)

Query: 59  SMEKYAYSSKYVWKIDNFSKLGAGYKE-------SQAF--GAGNHKWKIELHPAGIDIGA 109
            +E  +Y+   +WKI ++ +              SQ F  G   +K    ++  G  +G 
Sbjct: 68  VLETASYNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGK 127

Query: 110 ADHLSMFLILENFTVENVQ---VYAEFTLRIWDQLGQSMNLFKVKCVSLHAINKFW--FH 164
             HLS+F ++     + +       + TL + DQ     +L           + F     
Sbjct: 128 GTHLSLFFVIMRGEYDALLPWPFKQKVTLMLMDQGSSRRHLGDA-FKPDPNSSSFKKPTG 186

Query: 165 TPKSSWGCPRFVSLSELNDPETGFLVNDVCVVEAEVTVLGISEP 208
               + GCP FV+ + L +    ++ +D   ++  V    + +P
Sbjct: 187 EMNIASGCPVFVAQTVLENG--TYIKDDTIFIKVIVDTSDLPDP 228

>2gkw_A TNF receptor-associated factor 3; CD40, NF-KB signaling, BAFF receptor, TRAF3, apoptosis; 2.70A {Homo sapiens} PDB: 1kzz_A 1l0a_A 1zms_A 1rf3_A Length = 192

 Score = 84.7 bits (209), Expect = 1e-20
 Identities = 31/164 (18%), Positives = 62/164 (37%), Gaps = 17/164 (10%)

Query: 59  SMEKYAYSSKYVWKIDNFSKLGAGYKE-------SQAF--GAGNHKWKIELHPAGIDIGA 109
            +E  +Y+   +WKI ++ +              SQ F  G   +K    ++  G  +G 
Sbjct: 32  VLETASYNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGK 91

Query: 110 ADHLSMFLILENFTVENVQ---VYAEFTLRIWDQLGQSMNLFKVKCVSLHAINKFW--FH 164
             HLS+F ++     + +       + TL + DQ     +L           + F     
Sbjct: 92  GTHLSLFFVIMRGEYDALLPWPFKQKVTLMLMDQGSSRRHLGDA-FKPDPNSSSFKKPTG 150

Query: 165 TPKSSWGCPRFVSLSELNDPETGFLVNDVCVVEAEVTVLGISEP 208
               + GCP FV+ + L +    ++ +D   ++  V    + +P
Sbjct: 151 EMNIASGCPVFVAQTVLENG--TYIKDDTIFIKVIVDTSDLPDP 192

>1lb6_A TNF receptor-associated factor 6; TRAF6-CD40 complex, signaling protein; 1.80A {Homo sapiens} SCOP: b.8.1.1 PDB: 1lb5_A 1lb4_A Length = 160

 Score = 76.1 bits (187), Expect = 7e-18
 Identities = 30/154 (19%), Positives = 51/154 (33%), Gaps = 19/154 (12%)

Query: 66  SSKYVWKIDNFSKLGAGYKE-------SQAF--GAGNHKWKIELHPAGIDIG-AADHLSM 115
           +  Y+WKI NF       +E       S  F  G   +K  + LH         A+++S+
Sbjct: 4   NGIYIWKIGNFGMHLKCQEEEKPVVIHSPGFYTGKPGYKLCMRLHLQLPTAQRCANYISL 63

Query: 116 FLIL---ENFTVENVQVYAEFTLRIWDQLGQSMNLFKVKCVSLHAINKFW----FHTPKS 168
           F+     E  +           L I DQ    +     + +        +          
Sbjct: 64  FVHTMQGEYDSHLPWPFQGTIRLTILDQSEAPVRQNHEEIMDAKPELLAFQRPTIPRNPK 123

Query: 169 SWGCPRFVSLSELNDPETGFLVNDVCVVEAEVTV 202
            +G   F+ L  L      F+ +D  +V  EV+ 
Sbjct: 124 GFGYVTFMHLEALRQR--TFIKDDTLLVRCEVST 155

>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens} Length = 522

 Score = 74.2 bits (182), Expect = 7e-16
 Identities = 28/138 (20%), Positives = 50/138 (36%), Gaps = 11/138 (7%)

Query: 67  SKYVWKIDNFSKLGAGYKESQAFGAGNHKWKIELHPAGIDIG-AADHLSMFL-ILENFTV 124
           + + + ++ FS+L      S      N  WKI + P           +  FL        
Sbjct: 31  ATFQFTVERFSRLSESV-LSPPCFVRNLPWKIMVMPRFYPDRPHQKSVGFFLQCNAESDS 89

Query: 125 ENVQVYAEFTLRIWDQLGQSMNLFKVKCVSLHAINKFWFHTPKSSWGCPRFVSLSELNDP 184
            +   +A+  L+I +      +  +             F   ++ WG   F++ SE+ DP
Sbjct: 90  TSWSCHAQAVLKIINYRDDEKSFSR--------RISHLFFHKENDWGFSNFMAWSEVTDP 141

Query: 185 ETGFLVNDVCVVEAEVTV 202
           E GF+ +D    E  V  
Sbjct: 142 EKGFIDDDKVTFEVFVQA 159

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	209
2foj_A	155	Ubiquitin carboxyl-terminal hydrolase 7; MATH doma	100.0
3ivv_A	145	Speckle-type POZ protein; protein binding, nucleus	99.97
4gjh_A	178	TNF receptor-associated factor 5; TRAF domain, imm	99.97
4ghu_A	198	TNF receptor-associated factor 3; alpha/beta, inna	99.96
2gkw_A	192	TNF receptor-associated factor 3; CD40, NF-KB sign	99.96
1ca9_A	192	TRAF2, protein (TNF receptor associated factor 2);	99.96
1lb6_A	160	TNF receptor-associated factor 6; TRAF6-CD40 compl	99.96
1d00_A	168	Tumor necrosis factor receptor associated protein	99.95
1flk_A	228	TNF receptor associated factor 3; TNF signaling, T	99.95
3hqi_A	312	Speckle-type POZ protein; SPOP, ubiquitin, puckere	99.94
2f1z_A	522	Ubiquitin carboxyl-terminal hydrolase 7; hausp, US	99.94
4gwm_A	592	Meprin A subunit beta; mulidomain structure, hydro	99.52
2foj_A	155	Ubiquitin carboxyl-terminal hydrolase 7; MATH doma	98.75
3ivv_A	145	Speckle-type POZ protein; protein binding, nucleus	98.54
2f1z_A	522	Ubiquitin carboxyl-terminal hydrolase 7; hausp, US	97.97
3hqi_A	312	Speckle-type POZ protein; SPOP, ubiquitin, puckere	97.93
4gwm_A	592	Meprin A subunit beta; mulidomain structure, hydro	84.21

>2foj_A Ubiquitin carboxyl-terminal hydrolase 7; MATH domain, hydrolase; 1.60A {Homo sapiens} PDB: 1yze_A 1yy6_A 2foo_A 2fop_A 3mqr_A 3mqs_C 2f1w_A 2f1x_A 2f1y_A 2xxn_A

Probab=100.00  E-value=1.7e-33  Score=215.60  Aligned_cols=136  Identities=21%  Similarity=0.292  Sum_probs=116.7

Q ss_pred             CCCEEEEEEcCccccCCCeeecccEEecCceEEEEEecCCCcC-CCCCeEEEEEEEccCC-CCCceEEEEEEEEEEcCCC
Q 046711           65 YSSKYVWKIDNFSKLGAGYKESQAFGAGNHKWKIELHPAGIDI-GAADHLSMFLILENFT-VENVQVYAEFTLRIWDQLG  142 (209)
Q Consensus        65 ~~~~~~w~I~nfS~l~~~~~~S~~F~~gg~~W~l~vyP~G~~~-~~~~~lSlyL~l~~~~-~~~~~~~~~f~l~ilnq~~  142 (209)
                      ..++|+|+|+|||.++ +.++|++|.+||++|+|++||+|+.. +.++||||||+|.... +.+|++.|+|+|+|+||++
T Consensus        17 ~~~~~~w~I~nfS~~~-~~~~S~~f~~gg~~W~i~~yP~G~~~~~~~~~lSlyL~~~~~~~~~~w~v~a~~~l~l~~~~~   95 (155)
T 2foj_A           17 SEATFQFTVERFSRLS-ESVLSPPCFVRNLPWKIMVMPRFYPDRPHQKSVGFFLQCNAESDSTSWSCHAQAVLKIINYRD   95 (155)
T ss_dssp             SEEEEEEEESSGGGCC-SCEECCCEEETTEEEEEEEEEEC------CBEEEEEEEESTTCCCSSCEEEEEEEEEECCSSC
T ss_pred             CCcEEEEEECChhhcC-CceEcCCEEECCccEEEEEEECCCCCCCCCCEEEEEEEeCCCCCCCCCEEEEEEEEEEEcCCC
Confidence            4689999999999996 78999999999999999999999865 3578999999996543 4579999999999999998


Q ss_pred             CCccEEEEeeeeccccceeEecCCCCCCcccceeeccccCCCCCCeeECCEEEEEEEEEEEeeecCC
Q 046711          143 QSMNLFKVKCVSLHAINKFWFHTPKSSWGCPRFVSLSELNDPETGFLVNDVCVVEAEVTVLGISEPI  209 (209)
Q Consensus       143 ~~~~~~k~~~~~~~~~~~~~F~~~~~~wG~~~Fi~~~~L~~~~~gyl~~D~l~i~~~v~v~~~t~~~  209 (209)
                      +..+..+.        ..++|.....+|||++||++++|+++++|||+||+|+|+|+|+|.++||.+
T Consensus        96 ~~~~~~~~--------~~~~F~~~~~~wG~~~Fi~~~~L~~~~~~yl~dD~l~Ie~~V~V~~~tG~~  154 (155)
T 2foj_A           96 DEKSFSRR--------ISHLFFHKENDWGFSNFMAWSEVTDPEKGFIDDDKVTFEVFVQADAPHGVA  154 (155)
T ss_dssp             GGGCEEEE--------EEEEEETTBCEEEEEEEEEHHHHTCTTTSSCBTTBEEEEEEEEECCCBSSC
T ss_pred             CcceEEec--------cEEEeCCCCCCEeECCeEEHHHhcCcCCCceECCEEEEEEEEEEeCccccc
Confidence            55566555        678898767899999999999999888999999999999999999999853

>3ivv_A Speckle-type POZ protein; protein binding, nucleus, UBL conjugation pathway, ligase; 1.25A {Homo sapiens} SCOP: b.8.1.1 PDB: 3ivq_A 3ivb_A 3hsv_A 3hqh_A 3hqm_A 3hql_A 2cr2_A

Probab=99.97  E-value=5e-32  Score=205.27  Aligned_cols=133  Identities=27%  Similarity=0.480  Sum_probs=113.1

Q ss_pred             eCCCCEEEEEEcCccccC---CCeeecccEEecCc---eEEEEEecCCCcCCCCCeEEEEEEEccCCCCCceEEEEEEEE
Q 046711           63 YAYSSKYVWKIDNFSKLG---AGYKESQAFGAGNH---KWKIELHPAGIDIGAADHLSMFLILENFTVENVQVYAEFTLR  136 (209)
Q Consensus        63 ~~~~~~~~w~I~nfS~l~---~~~~~S~~F~~gg~---~W~l~vyP~G~~~~~~~~lSlyL~l~~~~~~~~~~~~~f~l~  136 (209)
                      +...++|+|+|+|||.++   ++.+.|++|.+||+   +|+|++||+|+..+..+||||||+|.+.  +.|+++|+|+|+
T Consensus         7 ~~~~~~~~w~I~~fs~~~~~~g~~~~S~~F~~gg~~g~~W~i~~yP~G~~~~~~~~lSlyL~l~~~--~~w~v~a~f~l~   84 (145)
T 3ivv_A            7 KVVKFSYMWTINNFSFCREEMGEVIKSSTFSSGANDKLKWCLRVNPKGLDEESKDYLSLYLLLVSC--PKSEVRAKFKFS   84 (145)
T ss_dssp             CCCEEEEEEEESSGGGCCCCTTCCEECCCEEESGGGCEEEEEEEETTCSSGGGTTEEEEEEEEEEC--SSSEEEEEEEEE
T ss_pred             cEEEEEEEEEEcCchHHhhcCCCEEECCCcCCCCcCCceEEEEEEcCCCCCCCCCeEEEEEEEcCC--CCCcEEEEEEEE
Confidence            456789999999999986   57899999999996   9999999999876667999999999874  579999999999


Q ss_pred             EEcCCCCCccEEEEeeeeccccceeEecCCCCCCcccceeeccccCCCCCCeeECCEEEEEEEEEEEee
Q 046711          137 IWDQLGQSMNLFKVKCVSLHAINKFWFHTPKSSWGCPRFVSLSELNDPETGFLVNDVCVVEAEVTVLGI  205 (209)
Q Consensus       137 ilnq~~~~~~~~k~~~~~~~~~~~~~F~~~~~~wG~~~Fi~~~~L~~~~~gyl~~D~l~i~~~v~v~~~  205 (209)
                      |+||+++ .+....      ....++|. ...+|||++||++++|++++++||+||+|+|+|+|+|+++
T Consensus        85 llnq~~~-~~~~~~------~~~~~~F~-~~~~wG~~~Fi~~~~L~~~~~~yl~dD~l~I~~~V~V~~d  145 (145)
T 3ivv_A           85 ILNAKGE-ETKAME------SQRAYRFV-QGKDWGFKKFIRRDFLLDEANGLLPDDKLTLFCEVSVVQD  145 (145)
T ss_dssp             EECTTSC-EEEEEE------CSSCEEEE-TTCEEEEEEEEEHHHHHCGGGCSSGGGCEEEEEEEEECC-
T ss_pred             EEecCCC-ceeeec------ccceEEec-CCCCcCHHHeEEhhhhccccCCcEeCCEEEEEEEEEEEeC
Confidence            9999984 332211      01467887 4689999999999999877789999999999999999863

>4gjh_A TNF receptor-associated factor 5; TRAF domain, immune system; 2.81A {Mus musculus}

Probab=99.97  E-value=1.8e-31  Score=208.97  Aligned_cols=139  Identities=22%  Similarity=0.336  Sum_probs=115.1

Q ss_pred             eCCCCEEEEEEcCccccCC-------CeeecccEEec--CceEEEEEecCCCcCCCCCeEEEEEEEccCC---CCCceEE
Q 046711           63 YAYSSKYVWKIDNFSKLGA-------GYKESQAFGAG--NHKWKIELHPAGIDIGAADHLSMFLILENFT---VENVQVY  130 (209)
Q Consensus        63 ~~~~~~~~w~I~nfS~l~~-------~~~~S~~F~~g--g~~W~l~vyP~G~~~~~~~~lSlyL~l~~~~---~~~~~~~  130 (209)
                      .+.++.|+|+|+|||.+++       ..+.|++|.+|  ||+|+|++||+|+..+.++||||||+|.+++   ...|++.
T Consensus        20 ~~~~g~~~w~I~~fS~~~~~~~~g~~~~i~S~~F~~g~~G~~W~i~~yP~G~~~~~~~~lSlyL~l~~~~~d~~l~W~v~   99 (178)
T 4gjh_A           20 ACYSGKLIWKVTDYRVKKREAVEGHTVSVFSQPFYTSRCGYRLCARAYLNGDGSGKGTHLSLYFVVMRGEFDSLLQWPFR   99 (178)
T ss_dssp             CCSSSEEEEEECCHHHHHHHHHTTSCCCEECCCEESSTTSCEEEEEEETTCCGGGTTTEEEEEEEEBCCTTGGGSCSSCC
T ss_pred             cccceEEEEEECCHHHHHhhhhcCCCcEEECCCeEeCCCCeEEEEEEEECCCCCCCCCEEEEEEEEecCCCCcccCCceE
Confidence            3578999999999999862       27999999999  9999999999998876679999999998764   3579999


Q ss_pred             EEEEEEEEcCCCCCccEEEEeeeeccccceeEecC----CCCCCcccceeeccccCCCCCCeeECCEEEEEEEEEEEe
Q 046711          131 AEFTLRIWDQLGQSMNLFKVKCVSLHAINKFWFHT----PKSSWGCPRFVSLSELNDPETGFLVNDVCVVEAEVTVLG  204 (209)
Q Consensus       131 ~~f~l~ilnq~~~~~~~~k~~~~~~~~~~~~~F~~----~~~~wG~~~Fi~~~~L~~~~~gyl~~D~l~i~~~v~v~~  204 (209)
                      |+|+|+|+||.++..++.+.  ++ +....+.|+.    ...+|||.+||++++|+++++|||+||+|+|+|+|.|.+
T Consensus       100 a~~~l~Lldq~~~~~~~~~~--~~-~~~~~~~F~~p~~~~~~~wG~~~Fi~~~~L~~~~~~yL~dD~l~I~~~V~i~~  174 (178)
T 4gjh_A          100 QRVTLMLLDQSGKKNHIVET--FK-ADPNSSSFKRPDGEMNIASGCPRFVSHSTLENSKNTYIKDDTLFLKVAVDLTD  174 (178)
T ss_dssp             CEEEEEECCTTSSCCCEEEE--EE-CCTTCGGGSCCSSSBCCCEEEEEEEEHHHHHCTTCCSSBTTBEEEEEEECCTT
T ss_pred             EEEEEEEEcCCCCcceeEEe--ec-cCCccccccCCcccccCCcChhheeEHHHhhccccCcCcCCEEEEEEEEEecC
Confidence            99999999999866665432  11 1113456763    357899999999999998889999999999999997754

>4ghu_A TNF receptor-associated factor 3; alpha/beta, innate immunity, IFN pathway, immune system; 2.20A {Mus musculus} PDB: 2gkw_A 1kzz_A 1l0a_A 1zms_A 1rf3_A

Probab=99.96  E-value=3.6e-30  Score=204.69  Aligned_cols=140  Identities=21%  Similarity=0.274  Sum_probs=113.5

Q ss_pred             CCCCEEEEEEcCccccCC-------CeeecccEEec--CceEEEEEecCCCcCCCCCeEEEEEEEccCC---CCCceEEE
Q 046711           64 AYSSKYVWKIDNFSKLGA-------GYKESQAFGAG--NHKWKIELHPAGIDIGAADHLSMFLILENFT---VENVQVYA  131 (209)
Q Consensus        64 ~~~~~~~w~I~nfS~l~~-------~~~~S~~F~~g--g~~W~l~vyP~G~~~~~~~~lSlyL~l~~~~---~~~~~~~~  131 (209)
                      ..++.|+|+|+|||.+++       +.+.|++|.+|  ||+|+|.+||+|++.+.++||||||++.+++   ...|++.+
T Consensus        37 ~~~g~~~w~I~nfS~~~~~~~~~~g~~i~S~~F~vg~~Gy~W~i~~yPnG~~~~~~~~lSlyL~l~~g~~D~~l~wp~~a  116 (198)
T 4ghu_A           37 SYNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFVIMRGEYDALLPWPFKQ  116 (198)
T ss_dssp             CSSSEEEEEECCHHHHHHHHHTTSSCCEECCCEESSTTSCEEEEEEETTCCGGGTTTEEEEEEEEECCTTGGGSCSSCCC
T ss_pred             ccccEEEEEECCHHHHHhhhccCCCcEEECCCeEECCCCcEEEEEEEeCCCCCCCCCeEEEEEEecCCccCCCCCceEEE
Confidence            568999999999999863       68999999999  9999999999999876789999999999765   45899999


Q ss_pred             EEEEEEEcCCCCCccEEEEeeeeccc---cceeEecCCCCCCcccceeeccccCCCCCCeeECCEEEEEEEEEEEeeec
Q 046711          132 EFTLRIWDQLGQSMNLFKVKCVSLHA---INKFWFHTPKSSWGCPRFVSLSELNDPETGFLVNDVCVVEAEVTVLGISE  207 (209)
Q Consensus       132 ~f~l~ilnq~~~~~~~~k~~~~~~~~---~~~~~F~~~~~~wG~~~Fi~~~~L~~~~~gyl~~D~l~i~~~v~v~~~t~  207 (209)
                      +|+|+|+||.++..++...  +...+   ...+.|+..+.+|||++||++++|++  +|||+||+|+|+|+|.|+...+
T Consensus       117 ~~~l~Lldq~~~~~~~~~~--~~~~~~~~~f~rp~~~~~~~wG~~~Fi~~~~L~~--~gyL~dD~l~I~~~V~v~~~~~  191 (198)
T 4ghu_A          117 KVTLMLMDQGSSRRHLGDA--FKPDPNSSSFKKPTGEMNIASGCPVFVAQTVLEN--GTYIKDDTIFIKVIVDTSDLPD  191 (198)
T ss_dssp             CEEEEECCCSTTCCCEEEE--ECCCTTSGGGSCCSSSBCCCEEEEEEEEHHHHHH--TTSCBTTBEEEEEEECCTTCC-
T ss_pred             EEEEEEEcCCCCccceEEE--eecCcccceecCCcccCcCCcCchhEeEHHHhhh--cCCeeCCEEEEEEEEEeccCCC
Confidence            9999999999766666443  11100   01122333467899999999999996  8999999999999999876543

>2gkw_A TNF receptor-associated factor 3; CD40, NF-KB signaling, BAFF receptor, TRAF3, apoptosis; 2.70A {Homo sapiens} PDB: 1kzz_A 1l0a_A 1zms_A 1rf3_A

Probab=99.96  E-value=1.5e-29  Score=200.26  Aligned_cols=135  Identities=23%  Similarity=0.343  Sum_probs=111.4

Q ss_pred             CCCEEEEEEcCccccC-----CC--eeecccEEec--CceEEEEEecCCCcCCCCCeEEEEEEEccCC---CCCceEEEE
Q 046711           65 YSSKYVWKIDNFSKLG-----AG--YKESQAFGAG--NHKWKIELHPAGIDIGAADHLSMFLILENFT---VENVQVYAE  132 (209)
Q Consensus        65 ~~~~~~w~I~nfS~l~-----~~--~~~S~~F~~g--g~~W~l~vyP~G~~~~~~~~lSlyL~l~~~~---~~~~~~~~~  132 (209)
                      ..++|+|+|+|||.++     ++  .++|++|.+|  ||+|+|++||+|++.+.++|||+||++.+++   ...|+++++
T Consensus        38 ~~g~~~w~I~~fS~~~~~~~~g~~~~i~S~~F~vg~~Gykw~i~~yPnG~~~~~~~~lSlyL~l~~~~~d~~l~wp~~a~  117 (192)
T 2gkw_A           38 YNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFVIMRGEYDALLPWPFKQK  117 (192)
T ss_dssp             CSSEEEEEEECHHHHHHHHHHTSCSCEECCCEESSTTSCEEEEEEETTCCGGGTTTEEEEEEEEECCTTGGGSCSSCCCC
T ss_pred             cCcEEEEEECCHHHHHHHhhcCCCceEEcccEEECCCCcEEEEEEEeCCCCCCCCCEEEEEEEEecCCCCccCCCcEEEE
Confidence            6899999999999986     34  5999999999  9999999999998876789999999998765   357999999


Q ss_pred             EEEEEEcCCCCCccEEEEeeeeccccceeEecCC----CCCCcccceeeccccCCCCCCeeECCEEEEEEEEEEEe
Q 046711          133 FTLRIWDQLGQSMNLFKVKCVSLHAINKFWFHTP----KSSWGCPRFVSLSELNDPETGFLVNDVCVVEAEVTVLG  204 (209)
Q Consensus       133 f~l~ilnq~~~~~~~~k~~~~~~~~~~~~~F~~~----~~~wG~~~Fi~~~~L~~~~~gyl~~D~l~i~~~v~v~~  204 (209)
                      |+|+|+||.++..++.+.  +. +....++|...    +.+|||++||++++|++  +|||+||+|+|+|+|.|.+
T Consensus       118 ~~l~lldq~~~~~~~~~~--~~-~~~~~~~F~~~~~~~~~~wG~~~Fi~~~~L~~--~gyl~dD~l~I~~~V~v~~  188 (192)
T 2gkw_A          118 VTLMLMDQGSSRRHLGDA--FK-PDPNSSSFKKPTGEMNIASGCPVFVAQTVLEN--GTYIKDDTIFIKVIVDTSD  188 (192)
T ss_dssp             EEEEECCCSTTCCCEEEE--EC-CCTTCTTSSCCSSSBCCCEEEEEEEEHHHHHH--TTSCBTTEEEEEEEECCTT
T ss_pred             EEEEEECCCCCccceEEE--Ee-cCCCcccccCCCCCCcCCCChHHEeEHHHhCc--CCCeeCCEEEEEEEEEcCC
Confidence            999999999866666432  11 11122557532    47899999999999997  6999999999999997754

>1ca9_A TRAF2, protein (TNF receptor associated factor 2); TNF signaling, TRAF, adapter protein, cell surviVal; 2.30A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1qsc_A 1czz_A

Probab=99.96  E-value=1.2e-29  Score=200.86  Aligned_cols=136  Identities=21%  Similarity=0.365  Sum_probs=109.9

Q ss_pred             CCCCEEEEEEcCccccCC-----C--eeecccEEe--cCceEEEEEecCCCcCCCCCeEEEEEEEccCC--C-CCceEEE
Q 046711           64 AYSSKYVWKIDNFSKLGA-----G--YKESQAFGA--GNHKWKIELHPAGIDIGAADHLSMFLILENFT--V-ENVQVYA  131 (209)
Q Consensus        64 ~~~~~~~w~I~nfS~l~~-----~--~~~S~~F~~--gg~~W~l~vyP~G~~~~~~~~lSlyL~l~~~~--~-~~~~~~~  131 (209)
                      ...+.|+|+|+|||.+++     +  .++||+|.+  |||+|+|.+||+|++.+.++||||||+|.+++  + ..|++.+
T Consensus        40 ~~~g~~~w~I~nfS~~~~~~~~g~~~~i~S~~F~v~~gG~~W~i~~yP~G~~~~~~~~lSlyL~l~~~~~~~~~~W~~~a  119 (192)
T 1ca9_A           40 TYDGVFIWKISDFARKRQEAVAGRIPAIFSPAFYTSRYGYKMCLRIYLNGDGTGRGTHLSLFFVVMKGPNDALLRWPFNQ  119 (192)
T ss_dssp             CSSSEEEEEEESHHHHHHHHHTTSSCCEECCCEESSTTSCEEEEEEETTCCGGGTTTEEEEEEEEECCTTGGGSCSSCCC
T ss_pred             ccCceEEEEECCHHHHHHHhhcCCCceEECceEEeCCCCeEEEEEEEeCCCCCCCCCEEEEEEEEccCCCCCcCCCceEE
Confidence            578999999999999862     2  599999999  99999999999998866679999999998875  2 6899999


Q ss_pred             EEEEEEEcCCCCCccEEEEeeeeccccceeEec----CCCCCCcccceeeccccCCCCCCeeECCEEEEEEEEEEEe
Q 046711          132 EFTLRIWDQLGQSMNLFKVKCVSLHAINKFWFH----TPKSSWGCPRFVSLSELNDPETGFLVNDVCVVEAEVTVLG  204 (209)
Q Consensus       132 ~f~l~ilnq~~~~~~~~k~~~~~~~~~~~~~F~----~~~~~wG~~~Fi~~~~L~~~~~gyl~~D~l~i~~~v~v~~  204 (209)
                      +|+|+|+||.++ .++...  +. +......|.    ..+.+|||++||++++|++ ++|||+||+|+|+|+|+|.+
T Consensus       120 ~~~l~lldq~~~-~~~~~~--~~-~~~~~~~f~rp~~~~~~~wG~~~Fi~~~~L~~-~~gyl~dD~l~I~~~V~V~~  191 (192)
T 1ca9_A          120 KVTLMLLDQNNR-EHVIDA--FR-PDVTSSSFQRPVNDMNIASGCPLFCPVSKMEA-KNSYVRDDAIFIKAIVDLTG  191 (192)
T ss_dssp             CEEEEECCTTSS-CCEEEE--EC-CCTTSGGGSCCSSSBCCCEEEEEEEETHHHHS-SCSSCBTTEEEEEEEECCTT
T ss_pred             EEEEEEECCCCC-ceeeEe--ec-cCCchhhhcCCccCCCCCcChhheeEHHHhhh-ccCCEeCCEEEEEEEEEecC
Confidence            999999999984 554332  11 000112343    2356899999999999995 47999999999999998854

>1lb6_A TNF receptor-associated factor 6; TRAF6-CD40 complex, signaling protein; 1.80A {Homo sapiens} SCOP: b.8.1.1 PDB: 1lb5_A 1lb4_A

Probab=99.96  E-value=5.8e-29  Score=191.36  Aligned_cols=136  Identities=22%  Similarity=0.246  Sum_probs=104.9

Q ss_pred             CCCEEEEEEcCccccC-----CC--eeecccEEec--CceEEEEEecCCCcCC-CCCeEEEEEEEccCC---CCCceEEE
Q 046711           65 YSSKYVWKIDNFSKLG-----AG--YKESQAFGAG--NHKWKIELHPAGIDIG-AADHLSMFLILENFT---VENVQVYA  131 (209)
Q Consensus        65 ~~~~~~w~I~nfS~l~-----~~--~~~S~~F~~g--g~~W~l~vyP~G~~~~-~~~~lSlyL~l~~~~---~~~~~~~~  131 (209)
                      ..+.|+|+|+|||.++     ++  .+.|++|.+|  ||+|+|++||+|+..+ .++||||||++.+++   ...|++.|
T Consensus         3 ~~g~~~w~I~~fS~~~~~~~~g~~~~i~S~~F~vg~~Gy~w~i~~yP~G~~~~~~~~~lSlyL~l~~~~~d~~l~wp~~a   82 (160)
T 1lb6_A            3 CNGIYIWKIGNFGMHLKCQEEEKPVVIHSPGFYTGKPGYKLCMRLHLQLPTAQRCANYISLFVHTMQGEYDSHLPWPFQG   82 (160)
T ss_dssp             CCEEEEEEECCHHHHHHHHHTTCCEEEECCCEESSSSCCEEEEEEEECCTTCTTTTTEEEEEEEEECCTTGGGSCSSCCS
T ss_pred             cCcEEEEEECCHHHHHHhhhcCCCeEEECcCeecCCCCeeEEEEEEecCCCCCCCCCEEEEEEEEeecCCCccCCCceee
Confidence            5689999999999985     34  8999999999  9999999999998754 378999999998765   45699999


Q ss_pred             EEEEEEEcCCCCC--ccEEEEeeeeccccceeEecC-----CCCCCcccceeeccccCCCCCCeeECCEEEEEEEEEEEe
Q 046711          132 EFTLRIWDQLGQS--MNLFKVKCVSLHAINKFWFHT-----PKSSWGCPRFVSLSELNDPETGFLVNDVCVVEAEVTVLG  204 (209)
Q Consensus       132 ~f~l~ilnq~~~~--~~~~k~~~~~~~~~~~~~F~~-----~~~~wG~~~Fi~~~~L~~~~~gyl~~D~l~i~~~v~v~~  204 (209)
                      +|+|+|+||.++.  .++...  +.. .+....|..     ...+|||++||++++|+.  +|||+||+|+|+|+|.|+.
T Consensus        83 ~~~l~lldq~~~~~~~~~~~~--~~~-~~~~~~f~~p~~~~~~~~~G~~~Fi~~~~L~~--~~yl~dD~l~I~~~V~v~~  157 (160)
T 1lb6_A           83 TIRLTILDQSEAPVRQNHEEI--MDA-KPELLAFQRPTIPRNPKGFGYVTFMHLEALRQ--RTFIKDDTLLVRCEVSTRF  157 (160)
T ss_dssp             EEEEEECCCSCTTSCCCEEEE--EEC-CTTSGGGSCCSSSBCSEEEEEEEEEEGGGGGT--SCCCBTTBEEEEEEEEC--
T ss_pred             eEEEEEEcCCCccccccceEE--eec-CCcchhccCCcccCCCCCcCEeeEeEHHHhhh--CCCccCCEEEEEEEEEEee
Confidence            9999999998742  222221  110 001123432     123799999999999995  8999999999999999976


Q ss_pred             e
Q 046711          205 I  205 (209)
Q Consensus       205 ~  205 (209)
                      +
T Consensus       158 ~  158 (160)
T 1lb6_A          158 D  158 (160)
T ss_dssp             -
T ss_pred             c
Confidence            4

>1d00_A Tumor necrosis factor receptor associated protein 2; B-sandwich, protein-peptide complex, apoptosis; 2.00A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1ca4_A 1d0j_A 1f3v_B 1czy_A 1d01_A 1d0a_A

Probab=99.95  E-value=2.5e-29  Score=194.72  Aligned_cols=136  Identities=21%  Similarity=0.355  Sum_probs=108.9

Q ss_pred             CCCCEEEEEEcCccccC-----CC--eeecccEE--ecCceEEEEEecCCCcCCCCCeEEEEEEEccCC--C-CCceEEE
Q 046711           64 AYSSKYVWKIDNFSKLG-----AG--YKESQAFG--AGNHKWKIELHPAGIDIGAADHLSMFLILENFT--V-ENVQVYA  131 (209)
Q Consensus        64 ~~~~~~~w~I~nfS~l~-----~~--~~~S~~F~--~gg~~W~l~vyP~G~~~~~~~~lSlyL~l~~~~--~-~~~~~~~  131 (209)
                      ...++|+|+|+|||.++     ++  .++||+|.  +|||+|+|++||+|+..+.++||||||+|.+++  . ..|++.+
T Consensus        16 ~~~g~~~w~I~nfS~~~~~~~~g~~~~i~S~~F~~~~gG~~W~i~~yP~G~~~~~~~~lSlyL~l~~~~~~~~~~w~~~~   95 (168)
T 1d00_A           16 TYDGVFIWKISDFARKRQEAVAGRIPAIFSPAFYTSRYGYKMCLRIYLNGDGTGRGTHLSLFFVVMKGPNDALLRWPFNQ   95 (168)
T ss_dssp             CSSSEEEEEEESHHHHHHHHHTTSSCCEECCCEESSTTSCEEEEEEETTCCGGGTTTEEEEEEEEECCTTGGGSCSSCCC
T ss_pred             ccCCEEEEEECCHHHHHHHhhcCCCeEEECCCeecCCCCEEEEEEEEeCCCCCCCCcEEEEEEEEecCCCCccCCCceEE
Confidence            46899999999999986     33  38999996  789999999999998766679999999998765  2 6899999


Q ss_pred             EEEEEEEcCCCCCccEEEEeeeeccccceeEecC----CCCCCcccceeeccccCCCCCCeeECCEEEEEEEEEEEe
Q 046711          132 EFTLRIWDQLGQSMNLFKVKCVSLHAINKFWFHT----PKSSWGCPRFVSLSELNDPETGFLVNDVCVVEAEVTVLG  204 (209)
Q Consensus       132 ~f~l~ilnq~~~~~~~~k~~~~~~~~~~~~~F~~----~~~~wG~~~Fi~~~~L~~~~~gyl~~D~l~i~~~v~v~~  204 (209)
                      +|+|+|+||.+ ..+....  .. ++...+.|..    .+.+|||++||++++|+++ +|||+||+|+|+|+|+|.+
T Consensus        96 ~~~l~ll~q~~-~~~~~~~--~~-~~~~~~~f~~p~~~~~~~~G~~~Fi~~~~L~~~-~gyl~dD~l~I~~~V~v~~  167 (168)
T 1d00_A           96 KVTLMLLDQNN-REHVIDA--FR-PDVTSSSFQRPVNDMNIASGCPLFCPVSKMEAK-NSYVRDDAIFIKAIVDLTG  167 (168)
T ss_dssp             CEEEEECCTTS-SCCEEEE--EC-CCTTSGGGSCCSSSBCCCEEEEEEEETTTTTSS-SSSSBTTEEEEEEEECCTT
T ss_pred             EEEEEEECCCC-Cccceec--cc-cCcchhhccCCCcCCCCCcCcceEeEHHHhccc-CCceeCCEEEEEEEEEecC
Confidence            99999999998 4555432  10 0001224542    3578999999999999973 3999999999999998753

>1flk_A TNF receptor associated factor 3; TNF signaling, TRAF3, CD40-binding protein, apoptosis; 2.80A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1fll_A

Probab=99.95  E-value=5.1e-29  Score=202.19  Aligned_cols=137  Identities=22%  Similarity=0.312  Sum_probs=112.4

Q ss_pred             CCCCEEEEEEcCccccC-----C--CeeecccEEec--CceEEEEEecCCCcCCCCCeEEEEEEEccCC---CCCceEEE
Q 046711           64 AYSSKYVWKIDNFSKLG-----A--GYKESQAFGAG--NHKWKIELHPAGIDIGAADHLSMFLILENFT---VENVQVYA  131 (209)
Q Consensus        64 ~~~~~~~w~I~nfS~l~-----~--~~~~S~~F~~g--g~~W~l~vyP~G~~~~~~~~lSlyL~l~~~~---~~~~~~~~  131 (209)
                      ...+.|+|+|+|||.++     +  ..++|++|.+|  ||+|+|++||+|++.+.++||||||++.+++   ...|++.+
T Consensus        73 ~~~g~~~wkI~nfS~~~~~~~~g~~~~i~S~~F~vg~~Gy~w~i~~yPnG~~~~~~~~lSlyL~l~~~~~d~~l~Wp~~a  152 (228)
T 1flk_A           73 SYNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFVIMRGEYDALLPWPFKQ  152 (228)
T ss_dssp             CSSSEEEEEEECHHHHHHHHHTTSCCCEECCCEESSTTSCEECEEEETTCCGGGTTTEEEEEECCBCCTTTTSSCSSCCC
T ss_pred             CcCcEEEEEECCHHHHHHHhhcCCCeeEECceEEeCCCCcEEEEEEEcCCCCCCCCCEEEEEEEEecCCccccCCCcEEE
Confidence            47899999999999986     2  37999999999  9999999999998876789999999998765   45799999


Q ss_pred             EEEEEEEcCCCCCccEEEEeeeeccccceeEecC----CCCCCcccceeeccccCCCCCCeeECCEEEEEEEEEEEee
Q 046711          132 EFTLRIWDQLGQSMNLFKVKCVSLHAINKFWFHT----PKSSWGCPRFVSLSELNDPETGFLVNDVCVVEAEVTVLGI  205 (209)
Q Consensus       132 ~f~l~ilnq~~~~~~~~k~~~~~~~~~~~~~F~~----~~~~wG~~~Fi~~~~L~~~~~gyl~~D~l~i~~~v~v~~~  205 (209)
                      +|+|+|+||.++..++.+.  ++. +...++|..    .+.+|||++||++++|++  +|||+||+|+|+|+|.|.+.
T Consensus       153 ~~~l~lldq~~~~~~~~~~--~~~-~~~~~~F~rp~~~~~~~wG~~~Fi~~~~L~~--~gyL~dD~l~I~~~V~v~~~  225 (228)
T 1flk_A          153 KVTLMLMDQGSSRRHLGDA--FKP-DPNSSSFKKPTGEMNIASGCPVFVAQTVLEN--GTYIKDDTIFIKVIVDTSDL  225 (228)
T ss_dssp             CEEEEECCCSSSCCCEEEE--ECC-CTTCTTSSSCSSSBCCCCSEEEEEEHHHHSS--STTCCSSEEEEEEECCCTTS
T ss_pred             EEEEEEEcCCCCccceeee--ecC-CCccccccCCccCCCCCcCHHHeeEHHHHcc--CCCccCCEEEEEEEEEcccc
Confidence            9999999999865565432  111 112234642    356899999999999997  79999999999999988654

>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A

Probab=99.94  E-value=3.6e-27  Score=199.00  Aligned_cols=131  Identities=27%  Similarity=0.498  Sum_probs=107.7

Q ss_pred             CCCEEEEEEcCccccC---CCeeecccEEecCc---eEEEEEecCCCcCCCCCeEEEEEEEccCCCCCceEEEEEEEEEE
Q 046711           65 YSSKYVWKIDNFSKLG---AGYKESQAFGAGNH---KWKIELHPAGIDIGAADHLSMFLILENFTVENVQVYAEFTLRIW  138 (209)
Q Consensus        65 ~~~~~~w~I~nfS~l~---~~~~~S~~F~~gg~---~W~l~vyP~G~~~~~~~~lSlyL~l~~~~~~~~~~~~~f~l~il  138 (209)
                      ..++|+|+|+|||.++   ++.+.|++|.+||+   +|+|.+||+|...+.++|||+||+|.++  .+|++.|+|+|+|+
T Consensus         5 ~~~~~~w~I~nfs~~~~~~~~~i~S~~F~~gg~~~~~W~i~~yP~G~~~~~~~~lslyL~~~~~--~~~~v~a~~~~~l~   82 (312)
T 3hqi_A            5 VKFSYMWTINNFSFCREEMGEVIKSSTFSSGANDKLKWCLRVNPKGLDEESKDYLSLYLLLVSC--PKSEVRAKFKFSIL   82 (312)
T ss_dssp             EEEEEEEEETTGGGCCCCTTCCEECCCBCC--CCCCEEEEEEETTCCC--CTTEEEEEEEEEEC--CC-CEEEEEEEEEE
T ss_pred             EEEEEEEEEcCcchhhhcCCCeEeeCCcccCCCCCceEEEEEECCCCCccCCCcEEEEEEEcCC--CCCcEEEEEEEEEE
Confidence            3578999999999997   78899999999985   9999999999876667999999999874  57999999999999


Q ss_pred             cCCCCCccEEEEeeeeccccceeEecCCCCCCcccceeeccccCCCCCCeeECCEEEEEEEEEEEee
Q 046711          139 DQLGQSMNLFKVKCVSLHAINKFWFHTPKSSWGCPRFVSLSELNDPETGFLVNDVCVVEAEVTVLGI  205 (209)
Q Consensus       139 nq~~~~~~~~k~~~~~~~~~~~~~F~~~~~~wG~~~Fi~~~~L~~~~~gyl~~D~l~i~~~v~v~~~  205 (209)
                      ||+++. +....      ....+.|.. ..+|||++||++++|+++++|||+||+++|+|+|+|++.
T Consensus        83 ~~~~~~-~~~~~------~~~~~~F~~-~~~wG~~~Fi~~~~L~~~~~~yl~dD~l~i~~~v~v~~~  141 (312)
T 3hqi_A           83 NAKGEE-TKAME------SQRAYRFVQ-GKDWGFKKFIRRGFLLDEANGLLPDDKLTLFCEVSVVQD  141 (312)
T ss_dssp             CTTSCE-EEEEE------CSSCEEECT-TCEEEEEEEEEHHHHTCGGGCCCGGGCEEEEEEEEEEEE
T ss_pred             eCCCCc-ccccc------cCCceeCCC-CCCcCHHHhccHHHhhccccCeecCCEEEEEEEEEEEec
Confidence            999843 32221      015678874 568999999999999987789999999999999999953

>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens}

Probab=99.94  E-value=4.9e-27  Score=211.11  Aligned_cols=135  Identities=21%  Similarity=0.303  Sum_probs=114.2

Q ss_pred             CCCCEEEEEEcCccccCCCeeecccEEecCceEEEEEecCCCcCC-CCCeEEEEEEEccCC-CCCceEEEEEEEEEEcCC
Q 046711           64 AYSSKYVWKIDNFSKLGAGYKESQAFGAGNHKWKIELHPAGIDIG-AADHLSMFLILENFT-VENVQVYAEFTLRIWDQL  141 (209)
Q Consensus        64 ~~~~~~~w~I~nfS~l~~~~~~S~~F~~gg~~W~l~vyP~G~~~~-~~~~lSlyL~l~~~~-~~~~~~~~~f~l~ilnq~  141 (209)
                      ...++|+|+|+|||.+++ .++|++|.+||++|+|.+||+|+..+ .++||||||.|.+.. +.+|.+.|+|+|+|+||.
T Consensus        28 ~~~~~~~w~I~nfS~~~~-~~~S~~F~vgg~~W~i~~yP~G~~~~~~~~~lSlyL~~~~~~~~~~w~v~a~f~l~l~n~~  106 (522)
T 2f1z_A           28 RSEATFQFTVERFSRLSE-SVLSPPCFVRNLPWKIMVMPRFYPDRPHQKSVGFFLQCNAESDSTSWSCHAQAVLKIINYR  106 (522)
T ss_dssp             CSEEEEEEEESSCTTCCS-CEECCCEEETTEEEEEEECBC--------CBBCEEEEESTTCCCSSCBEEEEEEEEECCTT
T ss_pred             cCCcEEEEEECChhhcCC-ceeCCCEEECCEeeEEEEEeCCCCCCCCCCeEEEEEEecCCCCCCCceEEEEEEEEEEcCC
Confidence            347899999999999986 88999999999999999999997543 578999999998755 668999999999999999


Q ss_pred             CCCccEEEEeeeeccccceeEecCCCCCCcccceeeccccCCCCCCeeECCEEEEEEEEEEEeeec
Q 046711          142 GQSMNLFKVKCVSLHAINKFWFHTPKSSWGCPRFVSLSELNDPETGFLVNDVCVVEAEVTVLGISE  207 (209)
Q Consensus       142 ~~~~~~~k~~~~~~~~~~~~~F~~~~~~wG~~~Fi~~~~L~~~~~gyl~~D~l~i~~~v~v~~~t~  207 (209)
                      ++..+..+.        ..++|.....+|||.+||++++|.++++|||+||+++|+|+|+|...+|
T Consensus       107 ~~~~~~~~~--------~~~~F~~~~~~wG~~~Fi~~~~L~~~~~g~L~nD~l~i~~~V~v~~p~g  164 (522)
T 2f1z_A          107 DDEKSFSRR--------ISHLFFHKENDWGFSNFMAWSEVTDPEKGFIDDDKVTFEVFVQADAPHG  164 (522)
T ss_dssp             CGGGCEEEE--------CCEEECGGGCEEEESSSSBHHHHSCGGGSSCBTTBEEEEEEEEECCCBS
T ss_pred             CCccceecc--------ceeEecCCCCCcchhheeEhhHhcCcccCcccCCcEEEEEEeecccccc
Confidence            866666666        7788986678899999999999988779999999999999999976554

>4gwm_A Meprin A subunit beta; mulidomain structure, hydrolase; HET: NAG BMA FUC MAN; 1.85A {Homo sapiens} PDB: 4gwn_A*

Probab=99.52  E-value=2.3e-14  Score=129.55  Aligned_cols=135  Identities=16%  Similarity=0.225  Sum_probs=103.6

Q ss_pred             eCCCCEEEEEEcCccccC---CCeeecccEEe-cCceEEEEEecCCCcCCCCCeEEEEEEEccCC---CCCceEE-EEEE
Q 046711           63 YAYSSKYVWKIDNFSKLG---AGYKESQAFGA-GNHKWKIELHPAGIDIGAADHLSMFLILENFT---VENVQVY-AEFT  134 (209)
Q Consensus        63 ~~~~~~~~w~I~nfS~l~---~~~~~S~~F~~-gg~~W~l~vyP~G~~~~~~~~lSlyL~l~~~~---~~~~~~~-~~f~  134 (209)
                      +..+..+.|+|+||+++.   +..++||+|.. .||+++|.+||++     ..++|||++|..++   .+.|++. -+++
T Consensus       402 ~G~CP~~vw~i~nfs~~l~~~~~~~~Sp~Fys~~GY~~~v~l~~~~-----~~~~~~~~~l~sG~~D~~L~WP~~~~q~t  476 (592)
T 4gwm_A          402 ETRCPHHIWHIRNFTQFIGSPNGTLYSPPFYSSKGYAFQIYLNLAH-----VTNAGIYFHLISGANDDQLQWPCPWQQAT  476 (592)
T ss_dssp             SSCCCSEEEEECSCGGGTTCTTCEEECCCEECTTSCEEEEEEECCS-----SSEEEEEEEEECCTTGGGSCSSCCSEEEE
T ss_pred             eCCCCCCceeecCHHHhhcCCCCceeCCCccCCCCeEEEEEEecCC-----CceEEEEEEEecCCCCCCccCCCCCCEEE
Confidence            577889999999999985   56899999974 6999999999975     57999999999987   7899994 7899


Q ss_pred             EEEEcCCCCCcc-EEEEeeeecccc-----------------ceeEecC-----CCCCCcccceeeccccCCCCCCeeEC
Q 046711          135 LRIWDQLGQSMN-LFKVKCVSLHAI-----------------NKFWFHT-----PKSSWGCPRFVSLSELNDPETGFLVN  191 (209)
Q Consensus       135 l~ilnq~~~~~~-~~k~~~~~~~~~-----------------~~~~F~~-----~~~~wG~~~Fi~~~~L~~~~~gyl~~  191 (209)
                      +.|+||+.+... +..+.+++..+.                 ....|..     .+.+|||+.||+++.|..  ..||+|
T Consensus       477 ~~llDQ~pd~~~rms~~~s~ttdp~~~~~~~~~~w~~P~~~g~~~~~~~~~~~~r~~~~G~~~fish~~l~~--r~fiK~  554 (592)
T 4gwm_A          477 MTLLDQNPDIRQRMSNQRSITTDPFMTTDNGNYFWDRPSKVGTVALFSNGTQFRRGGGYGTSAFITHERLKS--RDFIKG  554 (592)
T ss_dssp             EEECCCCSSGGGCCCEEEEEECCTTCBCTTSCBTTSCHHHHCEEEECTTCCEEEEEEEEEEEEEEEHHHHTS--TTSSBT
T ss_pred             EEEeCCCCChHhcCceeEEEEcCCcccCcccccccCCcccccccccccCCcceeecCCcCccccccHHHHhh--cCcccC
Confidence            999999864321 122222321110                 0011221     246789999999999986  689999


Q ss_pred             CEEEEEEEEEEEe
Q 046711          192 DVCVVEAEVTVLG  204 (209)
Q Consensus       192 D~l~i~~~v~v~~  204 (209)
                      |+|+|.++|+-+.
T Consensus       555 d~~~i~~~~eD~~  567 (592)
T 4gwm_A          555 DDVYILLTVEDIS  567 (592)
T ss_dssp             TBEEEEEEEEECG
T ss_pred             CeEEEEEEEEeCc
Confidence            9999999998764

>2foj_A Ubiquitin carboxyl-terminal hydrolase 7; MATH domain, hydrolase; 1.60A {Homo sapiens} PDB: 1yze_A 1yy6_A 2foo_A 2fop_A 3mqr_A 3mqs_C 2f1w_A 2f1x_A 2f1y_A 2xxn_A

Probab=98.75  E-value=3.3e-09  Score=80.14  Aligned_cols=46  Identities=20%  Similarity=0.419  Sum_probs=42.7

Q ss_pred             ceeecCCCcccccccceecccccCCCCCEEEcCeEEEeEEEEE-ece
Q 046711            5 ERRFNGLKLQWGLDQFIPLEAFNDSTNGYLVKDTCVFGAEVFV-KER   50 (209)
Q Consensus         5 ~~~f~~~~~~~G~~~fi~~~~l~~~~~gyl~~d~~~~~~~v~~-~~~   50 (209)
                      .|+|+....+|||.+||+|++|+||.+|||+||+++|+++|.| +|+
T Consensus       105 ~~~F~~~~~~wG~~~Fi~~~~L~~~~~~yl~dD~l~Ie~~V~V~~~t  151 (155)
T 2foj_A          105 SHLFFHKENDWGFSNFMAWSEVTDPEKGFIDDDKVTFEVFVQADAPH  151 (155)
T ss_dssp             EEEEETTBCEEEEEEEEEHHHHTCTTTSSCBTTBEEEEEEEEECCCB
T ss_pred             EEEeCCCCCCEeECCeEEHHHhcCcCCCceECCEEEEEEEEEEeCcc
Confidence            5789888889999999999999999999999999999999999 664

>3ivv_A Speckle-type POZ protein; protein binding, nucleus, UBL conjugation pathway, ligase; 1.25A {Homo sapiens} SCOP: b.8.1.1 PDB: 3ivq_A 3ivb_A 3hsv_A 3hqh_A 3hqm_A 3hql_A 2cr2_A

Probab=98.54  E-value=1.3e-08  Score=76.01  Aligned_cols=43  Identities=33%  Similarity=0.508  Sum_probs=39.2

Q ss_pred             cceeecCCCcccccccceecccccCCCCCEEEcCeEEEeEEEEE
Q 046711            4 KERRFNGLKLQWGLDQFIPLEAFNDSTNGYLVKDTCVFGAEVFV   47 (209)
Q Consensus         4 ~~~~f~~~~~~~G~~~fi~~~~l~~~~~gyl~~d~~~~~~~v~~   47 (209)
                      ..|+|+ ...+|||.+||++++|+|+++|||+||+++|+++|.|
T Consensus       100 ~~~~F~-~~~~wG~~~Fi~~~~L~~~~~~yl~dD~l~I~~~V~V  142 (145)
T 3ivv_A          100 RAYRFV-QGKDWGFKKFIRRDFLLDEANGLLPDDKLTLFCEVSV  142 (145)
T ss_dssp             SCEEEE-TTCEEEEEEEEEHHHHHCGGGCSSGGGCEEEEEEEEE
T ss_pred             ceEEec-CCCCcCHHHeEEhhhhccccCCcEeCCEEEEEEEEEE
Confidence            468897 4689999999999999999999999999999999987

>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens}

Probab=97.97  E-value=1.9e-06  Score=77.12  Aligned_cols=47  Identities=19%  Similarity=0.396  Sum_probs=42.9

Q ss_pred             cceeecCCCcccccccceecccccCCCCCEEEcCeEEEeEEEEE-ece
Q 046711            4 KERRFNGLKLQWGLDQFIPLEAFNDSTNGYLVKDTCVFGAEVFV-KER   50 (209)
Q Consensus         4 ~~~~f~~~~~~~G~~~fi~~~~l~~~~~gyl~~d~~~~~~~v~~-~~~   50 (209)
                      ..|+|+....+|||.+||++++|.|+.+|||+||++.|+++|.| .|+
T Consensus       116 ~~~~F~~~~~~wG~~~Fi~~~~L~~~~~g~L~nD~l~i~~~V~v~~p~  163 (522)
T 2f1z_A          116 ISHLFFHKENDWGFSNFMAWSEVTDPEKGFIDDDKVTFEVFVQADAPH  163 (522)
T ss_dssp             CCEEECGGGCEEEESSSSBHHHHSCGGGSSCBTTBEEEEEEEEECCCB
T ss_pred             ceeEecCCCCCcchhheeEhhHhcCcccCcccCCcEEEEEEeeccccc
Confidence            35889888899999999999999999999999999999999999 654

>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A

Probab=97.93  E-value=2.3e-06  Score=71.39  Aligned_cols=43  Identities=33%  Similarity=0.460  Sum_probs=39.1

Q ss_pred             cceeecCCCcccccccceecccccCCCCCEEEcCeEEEeEEEEE
Q 046711            4 KERRFNGLKLQWGLDQFIPLEAFNDSTNGYLVKDTCVFGAEVFV   47 (209)
Q Consensus         4 ~~~~f~~~~~~~G~~~fi~~~~l~~~~~gyl~~d~~~~~~~v~~   47 (209)
                      ..|+|+.. .+|||.+||+|++|+++.+|||+||+++|+++|.|
T Consensus        96 ~~~~F~~~-~~wG~~~Fi~~~~L~~~~~~yl~dD~l~i~~~v~v  138 (312)
T 3hqi_A           96 RAYRFVQG-KDWGFKKFIRRGFLLDEANGLLPDDKLTLFCEVSV  138 (312)
T ss_dssp             SCEEECTT-CEEEEEEEEEHHHHTCGGGCCCGGGCEEEEEEEEE
T ss_pred             CceeCCCC-CCcCHHHhccHHHhhccccCeecCCEEEEEEEEEE
Confidence            46788854 58999999999999999999999999999999999

>4gwm_A Meprin A subunit beta; mulidomain structure, hydrolase; HET: NAG BMA FUC MAN; 1.85A {Homo sapiens} PDB: 4gwn_A*

Probab=84.21  E-value=0.29  Score=44.22  Aligned_cols=34  Identities=18%  Similarity=0.205  Sum_probs=29.8

Q ss_pred             CcccccccceecccccCCCCCEEEcCeEEEeEEEEE
Q 046711           12 KLQWGLDQFIPLEAFNDSTNGYLVKDTCVFGAEVFV   47 (209)
Q Consensus        12 ~~~~G~~~fi~~~~l~~~~~gyl~~d~~~~~~~v~~   47 (209)
                      ...|||..||+++.|.  +..||+||++.|-++|.-
T Consensus       532 ~~~~G~~~fish~~l~--~r~fiK~d~~~i~~~~eD  565 (592)
T 4gwm_A          532 GGGYGTSAFITHERLK--SRDFIKGDDVYILLTVED  565 (592)
T ss_dssp             EEEEEEEEEEEHHHHT--STTSSBTTBEEEEEEEEE
T ss_pred             cCCcCccccccHHHHh--hcCcccCCeEEEEEEEEe
Confidence            3468999999999998  567999999999999876

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	209
d1czya1	152	b.8.1.1 (A:350-501) TNF receptor associated factor	2e-25
d1l0aa1	155	b.8.1.1 (A:350-504) TNF receptor associated factor	7e-24
d2cr2a1	146	b.8.1.1 (A:8-153) Speckle-type poz protein SPOP {H	2e-23
d2cr2a1	146	b.8.1.1 (A:8-153) Speckle-type poz protein SPOP {H	3e-05
d1lb6a_	155	b.8.1.1 (A:) TNF receptor associated factor 6 (TRA	3e-19

>d1czya1 b.8.1.1 (A:350-501) TNF receptor associated factor 2 (TRAF2) {Human (Homo sapiens) [TaxId: 9606]} Length = 152

class: All beta proteins
fold: TRAF domain-like
superfamily: TRAF domain-like
family: MATH domain
domain: TNF receptor associated factor 2 (TRAF2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 94.4 bits (234), Expect = 2e-25
 Identities = 28/153 (18%), Positives = 62/153 (40%), Gaps = 13/153 (8%)

Query: 65  YSSKYVWKIDNFSKL-------GAGYKESQAFGAGN--HKWKIELHPAGIDIGAADHLSM 115
           Y   ++WKI +F +              S AF      +K  + ++  G   G   HLS+
Sbjct: 1   YDGVFIWKISDFPRKRQEAVAGRIPAIFSPAFYTSRYGYKMCLRIYLNGDGTGRGTHLSL 60

Query: 116 FLILENFTVENVQ---VYAEFTLRIWDQLGQSMNLFKVKCVSLHAINKFWFHTPKSSWGC 172
           F ++     + +       + TL + DQ  +   +   +     +  +   +    + GC
Sbjct: 61  FFVVMKGPNDALLRWPFNQKVTLMLLDQNNREHVIDAFRPDVTSSSFQRPVNDMNIASGC 120

Query: 173 PRFVSLSELNDPETGFLVNDVCVVEAEVTVLGI 205
           P F  +S++ + +  ++ +D   ++A V + G+
Sbjct: 121 PLFCPVSKM-EAKNSYVRDDAIFIKAIVDLTGL 152

>d1l0aa1 b.8.1.1 (A:350-504) TNF receptor associated factor 3 (TRAF3) {Human (Homo sapiens) [TaxId: 9606]} Length = 155

class: All beta proteins
fold: TRAF domain-like
superfamily: TRAF domain-like
family: MATH domain
domain: TNF receptor associated factor 3 (TRAF3)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 90.7 bits (224), Expect = 7e-24
 Identities = 32/157 (20%), Positives = 60/157 (38%), Gaps = 15/157 (9%)

Query: 65  YSSKYVWKIDNFSKLGAGYKE-------SQAFGAGN--HKWKIELHPAGIDIGAADHLSM 115
           Y+   +WKI ++ +              SQ F  G   +K    ++  G  +G   HLS+
Sbjct: 1   YNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSL 60

Query: 116 FLIL---ENFTVENVQVYAEFTLRIWDQLGQSMNLFKV-KCVSLHAINKFWFHTPKSSWG 171
           F ++   E   +       + TL + DQ     +L    K     +  K        + G
Sbjct: 61  FFVIMRGEYDALLPWPFKQKVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASG 120

Query: 172 CPRFVSLSELNDPETGFLVNDVCVVEAEVTVLGISEP 208
           CP FV+ + L +    ++ +D   ++  V    + +P
Sbjct: 121 CPVFVAQTVLENG--TYIKDDTIFIKVIVDTSDLPDP 155

>d2cr2a1 b.8.1.1 (A:8-153) Speckle-type poz protein SPOP {Human (Homo sapiens) [TaxId: 9606]} Length = 146

class: All beta proteins
fold: TRAF domain-like
superfamily: TRAF domain-like
family: MATH domain
domain: Speckle-type poz protein SPOP
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 89.5 bits (221), Expect = 2e-23
 Identities = 36/143 (25%), Positives = 61/143 (42%), Gaps = 16/143 (11%)

Query: 68  KYVWKIDNFSKLGAGYKE---SQAFGAGNH---KWKIELHPAGIDIGAADHLSMFLILEN 121
            Y+W I+NFS       E   S  F +G +   KW + ++P G+D  + D+LS++L+L +
Sbjct: 6   SYMWTINNFSFCREEMGEVIKSSTFSSGANDKLKWCLRVNPKGLDEESKDYLSLYLLLVS 65

Query: 122 FTVENVQVYAEFTLRIWDQLGQSMNLFKVKCVSLHAINKFWFHTPKSSWGCPRFVSLSEL 181
                V   A+F   I +  G        +        + +       WG  +F+    L
Sbjct: 66  CPKSEV--RAKFKFSILNAKG--------EETKAMESQRAYRFVQGKDWGFKKFIRRDFL 115

Query: 182 NDPETGFLVNDVCVVEAEVTVLG 204
            D   G L +D   +  EV+V+ 
Sbjct: 116 LDEANGLLPDDKLTLFCEVSVVQ 138

>d2cr2a1 b.8.1.1 (A:8-153) Speckle-type poz protein SPOP {Human (Homo sapiens) [TaxId: 9606]} Length = 146

class: All beta proteins
fold: TRAF domain-like
superfamily: TRAF domain-like
family: MATH domain
domain: Speckle-type poz protein SPOP
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.5 bits (94), Expect = 3e-05
 Identities = 13/46 (28%), Positives = 16/46 (34%)

Query: 6   RRFNGLKLQWGLDQFIPLEAFNDSTNGYLVKDTCVFGAEVFVKERS 51
                    WG  +FI  +   D  NG L  D      EV V + S
Sbjct: 95  AYRFVQGKDWGFKKFIRRDFLLDEANGLLPDDKLTLFCEVSVVQDS 140

>d1lb6a_ b.8.1.1 (A:) TNF receptor associated factor 6 (TRAF6) {Human (Homo sapiens) [TaxId: 9606]} Length = 155

class: All beta proteins
fold: TRAF domain-like
superfamily: TRAF domain-like
family: MATH domain
domain: TNF receptor associated factor 6 (TRAF6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 78.3 bits (192), Expect = 3e-19
 Identities = 32/151 (21%), Positives = 51/151 (33%), Gaps = 19/151 (12%)

Query: 68  KYVWKIDNFSKLGAGYKE-------SQAFGAGN--HKWKIELHPAGIDIG-AADHLSMFL 117
            Y+WKI NF       +E       S  F  G   +K  + LH         A+++S+F+
Sbjct: 6   IYIWKIGNFGMHLKCQEEEKPVVIHSPGFYTGKPGYKLCMRLHLQLPTAQRCANYISLFV 65

Query: 118 IL---ENFTVENVQVYAEFTLRIWDQLGQSMNLFKVK----CVSLHAINKFWFHTPKSSW 170
                E  +           L I DQ    +     +       L A  +         +
Sbjct: 66  HTMQGEYDSHLPWPFQGTIRLTILDQSEAPVRQNHEEIMDAKPELLAFQRPTIPRNPKGF 125

Query: 171 GCPRFVSLSELNDPETGFLVNDVCVVEAEVT 201
           G   F+ L  L      F+ +D  +V  EV+
Sbjct: 126 GYVTFMHLEALRQR--TFIKDDTLLVRCEVS 154

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	209
d2cr2a1	146	Speckle-type poz protein SPOP {Human (Homo sapiens	99.96
d1czya1	152	TNF receptor associated factor 2 (TRAF2) {Human (H	99.96
d1l0aa1	155	TNF receptor associated factor 3 (TRAF3) {Human (H	99.96
d1lb6a_	155	TNF receptor associated factor 6 (TRAF6) {Human (H	99.95
d2cr2a1	146	Speckle-type poz protein SPOP {Human (Homo sapiens	98.41

>d2cr2a1 b.8.1.1 (A:8-153) Speckle-type poz protein SPOP {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: TRAF domain-like
superfamily: TRAF domain-like
family: MATH domain
domain: Speckle-type poz protein SPOP
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=2e-30  Score=194.65  Aligned_cols=131  Identities=27%  Similarity=0.512  Sum_probs=111.3

Q ss_pred             CCEEEEEEcCccccC---CCeeecccEEecCc---eEEEEEecCCCcCCCCCeEEEEEEEccCCCCCceEEEEEEEEEEc
Q 046711           66 SSKYVWKIDNFSKLG---AGYKESQAFGAGNH---KWKIELHPAGIDIGAADHLSMFLILENFTVENVQVYAEFTLRIWD  139 (209)
Q Consensus        66 ~~~~~w~I~nfS~l~---~~~~~S~~F~~gg~---~W~l~vyP~G~~~~~~~~lSlyL~l~~~~~~~~~~~~~f~l~iln  139 (209)
                      ..+|+|+|+|||.++   +++++||.|.+||+   +|+|.+||+|...+..+||||||.+.++  ..|++.++|+|+|+|
T Consensus         4 ~~~~~W~I~nfs~~~~~~~~~~~Sp~F~~~~~~~~~W~l~lyp~G~~~~~~~~lSv~L~~~~~--~~~~v~~~~~~~l~n   81 (146)
T d2cr2a1           4 KFSYMWTINNFSFCREEMGEVIKSSTFSSGANDKLKWCLRVNPKGLDEESKDYLSLYLLLVSC--PKSEVRAKFKFSILN   81 (146)
T ss_dssp             EEEEEEEEETGGGCCCCSSCCEECCCBCSSSCCSCCBEEEECTTCSSSSSSSBCCEEEECCCC--SSSEEEEECEEEEEC
T ss_pred             EEEEEEEECCchHHhhcCCCEEECCCEEeCCcCCeEEEEEEEECCCCCCCCCEEEEEEEeccC--CCceEEEEEEEEEEc
Confidence            357999999999986   47899999998874   8999999999988778899999999885  579999999999999


Q ss_pred             CCCCCccEEEEeeeeccccceeEecCCCCCCcccceeeccccCCCCCCeeECCEEEEEEEEEEEeee
Q 046711          140 QLGQSMNLFKVKCVSLHAINKFWFHTPKSSWGCPRFVSLSELNDPETGFLVNDVCVVEAEVTVLGIS  206 (209)
Q Consensus       140 q~~~~~~~~k~~~~~~~~~~~~~F~~~~~~wG~~~Fi~~~~L~~~~~gyl~~D~l~i~~~v~v~~~t  206 (209)
                      |+++..+..+.        ....+...+.+|||++||++++|.++.+|||+||+|+|+|+|+|++.+
T Consensus        82 ~~~~~~~~~~~--------~~~~~~~~~~~~G~~~fi~~~~l~~~~~g~l~~d~l~I~~~I~v~~e~  140 (146)
T d2cr2a1          82 AKGEETKAMES--------QRAYRFVQGKDWGFKKFIRRDFLLDEANGLLPDDKLTLFCEVSVVQDS  140 (146)
T ss_dssp             TTSCEEEEEEC--------SCCEEEETTCEEEESCCSBHHHHSCTTTTSCTTSEEEEEEEEEEECCS
T ss_pred             CCCCcccceEe--------cceEeCCCCCeeeccEEEEHHHhcCcccCceeCCEEEEEEEEEEEeCC
Confidence            98854433332        333344467899999999999999998999999999999999999754

>d1czya1 b.8.1.1 (A:350-501) TNF receptor associated factor 2 (TRAF2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: TRAF domain-like
superfamily: TRAF domain-like
family: MATH domain
domain: TNF receptor associated factor 2 (TRAF2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1.7e-30  Score=196.38  Aligned_cols=134  Identities=19%  Similarity=0.304  Sum_probs=106.8

Q ss_pred             CCEEEEEEcCccccC-------CCeeecccEEec--CceEEEEEecCCCcCCCCCeEEEEEEEccCC---CCCceEEEEE
Q 046711           66 SSKYVWKIDNFSKLG-------AGYKESQAFGAG--NHKWKIELHPAGIDIGAADHLSMFLILENFT---VENVQVYAEF  133 (209)
Q Consensus        66 ~~~~~w~I~nfS~l~-------~~~~~S~~F~~g--g~~W~l~vyP~G~~~~~~~~lSlyL~l~~~~---~~~~~~~~~f  133 (209)
                      .++|+|+|+|||.++       +..++||+|.+|  ||+|+|.+||+|...+..+|+||||++.+++   ...|++.++|
T Consensus         2 ~g~f~W~I~nFs~l~~~~~~~~~~~~~Sp~F~~g~~Gy~w~l~~yP~G~~~~~~~~lSlyL~l~~~~~d~~~~~~~~~~~   81 (152)
T d1czya1           2 DGVFIWKISDFPRKRQEAVAGRIPAIFSPAFYTSRYGYKMCLRIYLNGDGTGRGTHLSLFFVVMKGPNDALLRWPFNQKV   81 (152)
T ss_dssp             SSEEEEEECSHHHHHHHHHTTSCCCEECCCEESSTTSCEEEEEEETTCCGGGTTTEEEEEEEEECCTTGGGSCSSCCCCE
T ss_pred             CCEEEEEECCcHHHHHhhhcCCCceEECcCEEcCCCCeEEEEEEEeCCCCCCCCCEEEEEEEEccCCcCcccccceeeEE
Confidence            589999999999884       356899999998  9999999999999877789999999998765   5689999999


Q ss_pred             EEEEEcCCCCCccEEEEeeeeccc---cceeEecCCCCCCcccceeeccccCCCCCCeeECCEEEEEEEEEEE
Q 046711          134 TLRIWDQLGQSMNLFKVKCVSLHA---INKFWFHTPKSSWGCPRFVSLSELNDPETGFLVNDVCVVEAEVTVL  203 (209)
Q Consensus       134 ~l~ilnq~~~~~~~~k~~~~~~~~---~~~~~F~~~~~~wG~~~Fi~~~~L~~~~~gyl~~D~l~i~~~v~v~  203 (209)
                      +|+|+||.++ .+....  .....   ...+.+.....+|||.+||++++|+ +++|||+||+|+|+|+|.|+
T Consensus        82 ~~~l~d~~~~-~~~~~~--~~~~~~~~~~~r~~~~~~~~~G~~~fi~~~~L~-~~~gfl~dD~l~I~~~V~v~  150 (152)
T d1czya1          82 TLMLLDQNNR-EHVIDA--FRPDVTSSSFQRPVNDMNIASGCPLFCPVSKME-AKNSYVRDDAIFIKAIVDLT  150 (152)
T ss_dssp             EEEECCTTSS-CCEEEE--ECCCTTSGGGSCCSSSBCCCEEEEEEEETCCCC-CSTTTSCSSCEEEEEEECCT
T ss_pred             EEEEEcCCCC-ccceee--eccccccccccCCCcccccccchhhEEEHHHhc-ccCCcEeCCEEEEEEEEEec
Confidence            9999999884 443322  01000   0112233346789999999999995 45799999999999999764

>d1l0aa1 b.8.1.1 (A:350-504) TNF receptor associated factor 3 (TRAF3) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: TRAF domain-like
superfamily: TRAF domain-like
family: MATH domain
domain: TNF receptor associated factor 3 (TRAF3)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=7.5e-30  Score=193.16  Aligned_cols=137  Identities=20%  Similarity=0.238  Sum_probs=110.4

Q ss_pred             CCEEEEEEcCccccC-------CCeeecccEEec--CceEEEEEecCCCcCCCCCeEEEEEEEccCC---CCCceEEEEE
Q 046711           66 SSKYVWKIDNFSKLG-------AGYKESQAFGAG--NHKWKIELHPAGIDIGAADHLSMFLILENFT---VENVQVYAEF  133 (209)
Q Consensus        66 ~~~~~w~I~nfS~l~-------~~~~~S~~F~~g--g~~W~l~vyP~G~~~~~~~~lSlyL~l~~~~---~~~~~~~~~f  133 (209)
                      +|+|+|+|+|||.++       +..++||+|.+|  ||+|+|.+||+|+..+..+||||||++.+++   ...|++.++|
T Consensus         2 ~g~f~W~I~nfs~~~~~~~~~~~~~~~S~~F~~~~~Gy~w~l~~yp~G~~~~~~~~lSlyL~l~~~~~d~~~~~~~~~~~   81 (155)
T d1l0aa1           2 NGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFVIMRGEYDALLPWPFKQKV   81 (155)
T ss_dssp             SSEEEEEEECHHHHHHHHHTTSCSEEECCCEESSTTSCEEEEEEETTCCGGGTTTEEEEEEEEECCTTTTTSCSSCCCCE
T ss_pred             CCEEEEEECCcHHHHHhhhcCCCcEEECcCEEeCCCCcEEEEEEEeCCCCCCCCCEEEEEEEEccCCcCcccCCcEEEEE
Confidence            689999999999874       457999999998  9999999999999877789999999998865   5679999999


Q ss_pred             EEEEEcCCCCCccEEEEeeeeccc--cceeEecCCCCCCcccceeeccccCCCCCCeeECCEEEEEEEEEEEee
Q 046711          134 TLRIWDQLGQSMNLFKVKCVSLHA--INKFWFHTPKSSWGCPRFVSLSELNDPETGFLVNDVCVVEAEVTVLGI  205 (209)
Q Consensus       134 ~l~ilnq~~~~~~~~k~~~~~~~~--~~~~~F~~~~~~wG~~~Fi~~~~L~~~~~gyl~~D~l~i~~~v~v~~~  205 (209)
                      +|+|+||.++..+.... ....+.  ...+.+...+.+|||++||++++|++  +|||+||+|+|+|+|.+...
T Consensus        82 ~~~l~~q~~~~~~~~~~-~~~~~~~~~f~~~~~~~~~~~G~~~fi~~~~L~~--~gfl~dD~l~I~~~V~~~~~  152 (155)
T d1l0aa1          82 TLMLMDQGSSRRHLGDA-FKPDPNSSSFKKPTGEMNIASGCPVFVAQTVLEN--GTYIKDDTIFIKVIVDTSDL  152 (155)
T ss_dssp             EEEECCCSSSCCCEEEE-ECCCTTSTTSSCCSSSBCCCEEEEEEEEHHHHHT--TTTCBTTEEEEEEEECCSSS
T ss_pred             EEEEecCCCCccceeEE-EeeccccccccccccccccCcChhheeEHHHhhh--CCCEECCEEEEEEEEEeCCC
Confidence            99999999866665443 101110  01223334567899999999999985  89999999999999976443

>d1lb6a_ b.8.1.1 (A:) TNF receptor associated factor 6 (TRAF6) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: TRAF domain-like
superfamily: TRAF domain-like
family: MATH domain
domain: TNF receptor associated factor 6 (TRAF6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=3.3e-28  Score=183.80  Aligned_cols=135  Identities=21%  Similarity=0.235  Sum_probs=106.5

Q ss_pred             CCCEEEEEEcCccccC-------CCeeecccEEec--CceEEEEEecCCCcCCC-CCeEEEEEEEccCC---CCCceEEE
Q 046711           65 YSSKYVWKIDNFSKLG-------AGYKESQAFGAG--NHKWKIELHPAGIDIGA-ADHLSMFLILENFT---VENVQVYA  131 (209)
Q Consensus        65 ~~~~~~w~I~nfS~l~-------~~~~~S~~F~~g--g~~W~l~vyP~G~~~~~-~~~lSlyL~l~~~~---~~~~~~~~  131 (209)
                      ..|+|+|+|+|||.++       +..++||.|.+|  ||+|+|.+||+|...+. .+|||+||++.+++   ..+|++.+
T Consensus         3 ~~G~f~W~I~nfs~~~~~~~~~~~~~i~Sp~F~~g~~Gy~wrl~~yp~g~~~~~~~~~lsvyL~l~~~~~d~~~~~~~~~   82 (155)
T d1lb6a_           3 CNGIYIWKIGNFGMHLKCQEEEKPVVIHSPGFYTGKPGYKLCMRLHLQLPTAQRCANYISLFVHTMQGEYDSHLPWPFQG   82 (155)
T ss_dssp             CCEEEEEEECCHHHHHHHHHTTCCEEEECCCEESSSSCCEEEEEEEECCTTCTTTTTEEEEEEEEECCTTGGGSCSSCCS
T ss_pred             cccEEEEEECChHHHHHhhhcCCCcEEECcCEEeCCCCcEEEEEEEeCCCCCCCCCCEEEEEEEEecCcccccCCCcEEE
Confidence            5689999999999984       457999999998  99999999999987653 68999999999875   56899999


Q ss_pred             EEEEEEEcCCCCCccEEEEeeeecccc----ceeEecCCCCCCcccceeeccccCCCCCCeeECCEEEEEEEEE
Q 046711          132 EFTLRIWDQLGQSMNLFKVKCVSLHAI----NKFWFHTPKSSWGCPRFVSLSELNDPETGFLVNDVCVVEAEVT  201 (209)
Q Consensus       132 ~f~l~ilnq~~~~~~~~k~~~~~~~~~----~~~~F~~~~~~wG~~~Fi~~~~L~~~~~gyl~~D~l~i~~~v~  201 (209)
                      +++|.|+||++...+............    ..+.+.....+|||++||++++|++  +|||+||+|+|+|+|+
T Consensus        83 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~fi~~~~L~~--~gyl~dD~l~I~~~V~  154 (155)
T d1lb6a_          83 TIRLTILDQSEAPVRQNHEEIMDAKPELLAFQRPTIPRNPKGFGYVTFMHLEALRQ--RTFIKDDTLLVRCEVS  154 (155)
T ss_dssp             EEEEEECCCSCTTSCCCEEEEEECCTTSGGGSCCSSSBCSEEEEEEEEEEGGGGGT--SCCCBTTBEEEEEEEE
T ss_pred             EEEEEEECCCCCccceeeEEeeecCCccccccCCcccCCcCCcChHHeeEHHHhcc--CCCEECCEEEEEEEEE
Confidence            999999999886544322211111100    1122333457899999999999985  7999999999999986

>d2cr2a1 b.8.1.1 (A:8-153) Speckle-type poz protein SPOP {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: TRAF domain-like
superfamily: TRAF domain-like
family: MATH domain
domain: Speckle-type poz protein SPOP
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.41  E-value=4.6e-08  Score=71.19  Aligned_cols=46  Identities=26%  Similarity=0.345  Sum_probs=40.6

Q ss_pred             ceeecCCCcccccccceecccccCCCCCEEEcCeEEEeEEEEE-ece
Q 046711            5 ERRFNGLKLQWGLDQFIPLEAFNDSTNGYLVKDTCVFGAEVFV-KER   50 (209)
Q Consensus         5 ~~~f~~~~~~~G~~~fi~~~~l~~~~~gyl~~d~~~~~~~v~~-~~~   50 (209)
                      .+.+.....+|||.+||++++|++|.+|||+||+++|+++|.| ++.
T Consensus        94 ~~~~~~~~~~~G~~~fi~~~~l~~~~~g~l~~d~l~I~~~I~v~~e~  140 (146)
T d2cr2a1          94 RAYRFVQGKDWGFKKFIRRDFLLDEANGLLPDDKLTLFCEVSVVQDS  140 (146)
T ss_dssp             CCEEEETTCEEEESCCSBHHHHSCTTTTSCTTSEEEEEEEEEEECCS
T ss_pred             ceEeCCCCCeeeccEEEEHHHhcCcccCceeCCEEEEEEEEEEEeCC
Confidence            3456667789999999999999999999999999999999999 544