Citrus Sinensis ID: 046712

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560------
Protein Sequence
MKSQLQDPLGVTSSWNNSINLCQWTGVTCGHRRQRVTGLDLRHQSVGGVLSPFVGNLNFLRSINLPNNSFRGKIPHEVGNLFRLQNLTLTNNYFLGKILTDLSHCSNLMKFEASNNKLEGEIPVKISNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVAYNQFSGMIPPIYNISSLQYIFIHTNRFHGSVPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINRNLFSGKVSINFSRLQNLSRLNLGENNLGTGTTNDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQISDTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSIQILFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSNGNCQNLILLTTRKNKLSGIVPRQLLRIITLSVLLDLSDNLLSGHFPTKVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTISIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLLFLNMSYNHFEGKVPIEC
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccEEEEEccccccEEEEEccccccEEEccccccccccccEEEcccccccccccccccccccccEEEcccccccccccccccccccccEEEcccccccccccccccccccccEEEEEccccEEcccHHcccccccccEEcccccccccccHHHHcccccccEEcccccccccccccccccccccccccccccEEccccccccccccccEEEEccccccccccHHHHHHccccEEEcccccccccccccccccccccEEEcccccccccccccccccccccccccccEEEcccccccccccHHHHccccccccEEEcccEEEEccccccccccccccccccccEEEEcccccccccccccEEEccccccEEEccHHcccccccccccccccEEEccccccccccccccEEEcccccccccccHHHHcccccccEEEcccccccccccHHHHcccccccEEcccccccccccccccccccccEEEcccccccccccHHHHccccccEEEcccccccccccHHHHccccccEEccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHcccccccccccccccccccccccEEcccccccEEEEEcccccccccccHHHcccccccEEEcccccccccccHHHcccccccEEEcccccccccccHHHccccccEEEEEccccccccccHHHccccccEEEEEccccccccccHcHcccccccEEEcccccccccccHHHcccccccEEEEccccccccccccccccccEEEEEccccccccccHHHHccccccEEEEEccccccccccHcHccccccEEEEcccccccccccHHHcccccccEEEEccccccccccccccccHHHccccccEEEEEccccccccccHHHHccccccEEEEcccccccccccHcHcccccccEEEcccccEEccccHHHHHcccccEEEEEEEccEEEccHHHHHcccccEEEccccEEEccccHHHHHcccccEEEccccccEEEccHHHHcccccccEEEccccEEEEEccHHHHHcccccEEEcccccccccccccHcccccccEEEcccccccccccHHHHccccccEEEcccccccccccHHHcccccccEEEcccccccccccccc
Coil and Loop (DISEMBL)
mksqlqdplgvtsswnnsinlcqwtgvtcghrrqrvtgldlrhqsvggvlspfvgnlnflrsinlpnnsfrgkiphevgnlfrlqnltltnnYFLGKILTDLShcsnlmkfeasnnklegeipVKISNLLMLQILNIAENhlkgqlpasignlsaLQEIDVrgnrlggripstISHVRNLISFNVAynqfsgmippiynissLQYIFIHtnrfhgsvpldngvnlpnlryfsisgnnltgslQDSLSnatnlqgleinrnlfsgkvsinfsrlqnlsrlnlgennlgtgttndLDFITLLTNctklevldlhsnrfggvlpfslaNLSTTMTEIAigsnqisdtIPDVIANLVNLnalgvesnqlagtiPLAIGELKSIQILFLNenflrgtipsslgnlTLLTQLILEVNnlqgkippsngncqnlILLTTrknklsgivprQLLRIITLSVLLDLsdnllsghfptkvgnlknlvsldissnmfsgeipttlggctsleylgmqdnsftisipstlsslkSITEldlsrnnlsghipQYLENLSFLLFLNMSYnhfegkvpiec
Flexible Loop (DISEMBL)
mksqlqdplgvtsswnnsINLCQWTGVTCGHRRQRVTGLDLRHQSVGGVLSPFVGNLNFLRSINLPNNSFRGKIPHEVGNLFRLQNLTLTNNYFLGKILTDLSHCSNLMKFEASNNKLEGEIPVKISNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVAYNQFSGMIPPIYNISSLQYIFIHTNRFHGSVPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINRNLFSGKVSINFSRLQNLSRLNLGENNLGTGTTNDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQISDTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSIQILFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSNGNCQNLILLTTRKNKLSGIVPRQLLRIITLSVLLDLSDNLLSGHFPTKVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTISIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLLFLNMSYNHFegkvpiec
Low Complexity Region (SEG)
MKSQLQDPLGVTSSWNNSINLCQWTGVTCGHRRQRVTGLDLRHQSVGGVLSPFVGNLNFLRSINLPNNSFRGKIPHEVGNLFRLQNLTLTNNYFLGKILTDLSHCSNLMKFEASNNKLEGEIPVKISNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVAYNQFSGMIPPIYNISSLQYIFIHTNRFHGSVPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINRNLFSGKVSINFSRLQNLSRLNLGENNLGTGTTNDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQISDTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSIQILFLNENFLRGTIPSSlgnltlltqlilEVNNLQGKIPPSNGNCQNLILLTTRKNKLSGIVPRQLLRIITlsvlldlsdnllsGHFPTKVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTISIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLLFLNMSYNHFEGKVPIEC
Disordered region (IsUnstruct)
**********VTSSWNNSINLCQWTGVTCGHRRQRVTGLDLRHQSVGGVLSPFVGNLNFLRSINLPNNSFRGKIPHEVGNLFRLQNLTLTNNYFLGKILTDLSHCSNLMKFEASNNKLEGEIPVKISNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVAYNQFSGMIPPIYNISSLQYIFIHTNRFHGSVPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINRNLFSGKVSINFSRLQNLSRLNLGENNLGTGTTNDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQISDTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSIQILFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSNGNCQNLILLTTRKNKLSGIVPRQLLRIITLSVLLDLSDNLLSGHFPTKVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTISIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLLFLNMSYNHFEG******
Disordered Region (DISOPRED)
MKSQLQDPLGVTSSWNNSINLCQWTGVTCGHRRQRVTGLDLRHQSVGGVLSPFVGNLNFLRSINLPNNSFRGKIPHEVGNLFRLQNLTLTNNYFLGKILTDLSHCSNLMKFEASNNKLEGEIPVKISNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVAYNQFSGMIPPIYNISSLQYIFIHTNRFHGSVPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINRNLFSGKVSINFSRLQNLSRLNLGENNLGTGTTNDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQISDTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSIQILFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSNGNCQNLILLTTRKNKLSGIVPRQLLRIITLSVLLDLSDNLLSGHFPTKVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTISIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLLFLNMSYNHFEGKVPIE*
Disordered Region (DISEMBL)
**********VTSSWNNSINLCQWTGVTCGHRRQRVTGLDLRHQSVGGVLSPFVGNLNFLRSINLPNNSFRGKIPHEVGNLFRLQNLTLTNNYFLGKILTDLSHCSNLMKFEASNNKLEGEIPVKISNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVAYNQFSGMIPPIYNISSLQYIFIHTNRFHGSVPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINRNLFSGKVSINFSRLQNLSRLNLGENNLGTGTTNDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQISDTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSIQILFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSNGNCQNLILLTTRKNKLSGIVPRQLLRIITLSVLLDLSDNLLSGHFPTKVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTISIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLLFLNMSYNHFEGKVPIEC
Disordered Region (DISPRO)
*********GVTSSWNNSINLCQWTGVTCGHRRQRVTGLDLRHQSVGGVLSPFVGNLNFLRSINLPNNSFRGKIPHEVGNLFRLQNLTLTNNYFLGKILTDLSHCSNLMKFEASNNKLEGEIPVKISNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVAYNQFSGMIPPIYNISSLQYIFIHTNRFHGSVPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINRNLFSGKVSINFSRLQNLSRLNLGENNLGTGTTNDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQISDTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSIQILFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSNGNCQNLILLTTRKNKLSGIVPRQLLRIITLSVLLDLSDNLLSGHFPTKVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTISIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLLFLNMSYNHFEGKV****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MKSQLQDPLGVTSSWNNSINLCQWTGVTCGHRRQRVTGLDLRHQSVGGVLSPFVGNLNFLRSINLPNNSFRGKIPHEVGNLFRLQNLTLTNNYFLGKILTDLSHCSNLMKFEASNNKLEGEIPVKISNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVAYNQFSGMIPPIYNISSLQYIFIHTNRFHGSVPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINRNLFSGKVSINFSRLQNLSRLNLGENNLGTGTTNDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQISDTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSIQILFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSNGNCQNLILLTTRKNKLSGIVPRQLLRIITLSVLLDLSDNLLSGHFPTKVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTISIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLLFLNMSYNHFEGKVPIEC
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	566	2.2.26 [Sep-21-2011]
C0LGT6	1031	LRR receptor-like serine/	yes	no	0.973	0.534	0.447	1e-122
Q9SD62	1025	Putative receptor-like pr	no	no	0.994	0.549	0.463	1e-116
C0LGP4	1010	Probable LRR receptor-lik	no	no	0.992	0.556	0.425	1e-116
Q9FL28	1173	LRR receptor-like serine/	no	no	0.959	0.462	0.351	3e-77
O49545	1003	Leucine-rich repeat recep	no	no	0.957	0.540	0.330	1e-70
Q9M2Z1	1002	Leucine-rich repeat recep	no	no	0.957	0.540	0.336	8e-70
Q9FIZ3	1252	LRR receptor-like serine/	no	no	0.862	0.389	0.337	1e-67
O49318	1124	Probable leucine-rich rep	no	no	0.985	0.496	0.324	1e-66
C0LGQ5	1249	LRR receptor-like serine/	no	no	0.982	0.445	0.316	2e-66
Q9SHI2	1101	Leucine-rich repeat recep	no	no	0.980	0.504	0.329	2e-66

>sp|C0LGT6|EFR_ARATH LRR receptor-like serine/threonine-protein kinase EFR OS=Arabidopsis thaliana GN=EFR PE=1 SV=1

 Score =  437 bits (1124), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 248/554 (44%), Positives = 368/554 (66%), Gaps = 3/554 (0%)

Query: 11  VTSSWNNSINLCQWTGVTCGHRRQRVTGLDLRHQSVGGVLSPFVGNLNFLRSINLPNNSF 70
           V +SWN+S   C W GVTCG RR+RV  L+L    + GV+SP +GNL+FLR +NL +NSF
Sbjct: 50  VLASWNHSSPFCNWIGVTCGRRRERVISLNLGGFKLTGVISPSIGNLSFLRLLNLADNSF 109

Query: 71  RGKIPHEVGNLFRLQNLTLTNNYFLGKILTDLSHCSNLMKFEASNNKLEGEIPVKISNLL 130
              IP +VG LFRLQ L ++ N   G+I + LS+CS L   + S+N L   +P ++ +L 
Sbjct: 110 GSTIPQKVGRLFRLQYLNMSYNLLEGRIPSSLSNCSRLSTVDLSSNHLGHGVPSELGSLS 169

Query: 131 MLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVAYNQF 190
            L IL++++N+L G  PAS+GNL++LQ++D   N++ G IP  ++ +  ++ F +A N F
Sbjct: 170 KLAILDLSKNNLTGNFPASLGNLTSLQKLDFAYNQMRGEIPDEVARLTQMVFFQIALNSF 229

Query: 191 SGMIPP-IYNISSLQYIFIHTNRFHGSVPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNA 249
           SG  PP +YNISSL+ + +  N F G++  D G  LPNLR   +  N  TG++  +L+N 
Sbjct: 230 SGGFPPALYNISSLESLSLADNSFSGNLRADFGYLLPNLRRLLLGTNQFTGAIPKTLANI 289

Query: 250 TNLQGLEINRNLFSGKVSINFSRLQNLSRLNLGENNLGTGTTNDLDFITLLTNCTKLEVL 309
           ++L+  +I+ N  SG + ++F +L+NL  L +  N+LG  +++ L+FI  + NCT+LE L
Sbjct: 290 SSLERFDISSNYLSGSIPLSFGKLRNLWWLGIRNNSLGNNSSSGLEFIGAVANCTQLEYL 349

Query: 310 DLHSNRFGGVLPFSLANLSTTMTEIAIGSNQISDTIPDVIANLVNLNALGVESNQLAGTI 369
           D+  NR GG LP S+ANLSTT+T + +G N IS TIP  I NLV+L  L +E+N L+G +
Sbjct: 350 DVGYNRLGGELPASIANLSTTLTSLFLGQNLISGTIPHDIGNLVSLQELSLETNMLSGEL 409

Query: 370 PLAIGELKSIQILFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSNGNCQNLIL 429
           P++ G+L ++Q++ L  N + G IPS  GN+T L +L L  N+  G+IP S G C+ L+ 
Sbjct: 410 PVSFGKLLNLQVVDLYSNAISGEIPSYFGNMTRLQKLHLNSNSFHGRIPQSLGRCRYLLD 469

Query: 430 LTTRKNKLSGIVPRQLLRIITLSVLLDLSDNLLSGHFPTKVGNLKNLVSLDISSNMFSGE 489
           L    N+L+G +P+++L+I +L+  +DLS+N L+GHFP +VG L+ LV L  S N  SG+
Sbjct: 470 LWMDTNRLNGTIPQEILQIPSLAY-IDLSNNFLTGHFPEEVGKLELLVGLGASYNKLSGK 528

Query: 490 IPTTLGGCTSLEYLGMQDNSFTISIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLL 549
           +P  +GGC S+E+L MQ NSF  +IP  +S L S+  +D S NNLSG IP+YL +L  L 
Sbjct: 529 MPQAIGGCLSMEFLFMQGNSFDGAIPD-ISRLVSLKNVDFSNNNLSGRIPRYLASLPSLR 587

Query: 550 FLNMSYNHFEGKVP 563
            LN+S N FEG+VP
Sbjct: 588 NLNLSMNKFEGRVP 601

Constitutes the pattern-recognition receptor (PPR) that determines the specific perception of elongation factor Tu (EF-Tu), a potent elicitor of the defense response to pathogen-associated molecular patterns (PAMPs). Reduces transformation by Rhizobium radiobacter probably by inducing plant defense during the interaction. Binding to the effector AvrPto1 from P.syringae blocks the downstream plant immune response.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1

>sp|Q9SD62|Y3471_ARATH Putative receptor-like protein kinase At3g47110 OS=Arabidopsis thaliana GN=At3g47110 PE=3 SV=1

 Score =  418 bits (1075), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 263/567 (46%), Positives = 378/567 (66%), Gaps = 4/567 (0%)

Query: 1   MKSQLQDPLGVT-SSWNNSINLCQWTGVTCGHRRQRVTGLDLRHQSVGGVLSPFVGNLNF 59
            KSQ+ +   V   SWN+S+ LC WTGV CG + +RVTG+DL    + GV+SPFVGNL+F
Sbjct: 47  FKSQVSETSRVVLGSWNDSLPLCSWTGVKCGLKHRRVTGVDLGGLKLTGVVSPFVGNLSF 106

Query: 60  LRSINLPNNSFRGKIPHEVGNLFRLQNLTLTNNYFLGKILTDLSHCSNLMKFEASNNKLE 119
           LRS+NL +N F G IP EVGNLFRLQ L ++NN F G I   LS+CS+L   + S+N LE
Sbjct: 107 LRSLNLADNFFHGAIPSEVGNLFRLQYLNMSNNLFGGVIPVVLSNCSSLSTLDLSSNHLE 166

Query: 120 GEIPVKISNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRN 179
             +P++  +L  L +L++  N+L G+ PAS+GNL++LQ +D   N++ G IP  I+ ++ 
Sbjct: 167 QGVPLEFGSLSKLVLLSLGRNNLTGKFPASLGNLTSLQMLDFIYNQIEGEIPGDIARLKQ 226

Query: 180 LISFNVAYNQFSGMIPP-IYNISSLQYIFIHTNRFHGSVPLDNGVNLPNLRYFSISGNNL 238
           +I F +A N+F+G+ PP IYN+SSL ++ I  N F G++  D G  LPNL+   +  N+ 
Sbjct: 227 MIFFRIALNKFNGVFPPPIYNLSSLIFLSITGNSFSGTLRPDFGSLLPNLQILYMGINSF 286

Query: 239 TGSLQDSLSNATNLQGLEINRNLFSGKVSINFSRLQNLSRLNLGENNLGTGTTNDLDFIT 298
           TG++ ++LSN ++L+ L+I  N  +GK+ ++F RLQNL  L L  N+LG  ++ DLDF+ 
Sbjct: 287 TGTIPETLSNISSLRQLDIPSNHLTGKIPLSFGRLQNLLLLGLNNNSLGNYSSGDLDFLG 346

Query: 299 LLTNCTKLEVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQISDTIPDVIANLVNLNAL 358
            LTNC++L+ L++  N+ GG LP  +ANLST +TE+++G N IS +IP  I NLV+L  L
Sbjct: 347 ALTNCSQLQYLNVGFNKLGGQLPVFIANLSTQLTELSLGGNLISGSIPHGIGNLVSLQTL 406

Query: 359 GVESNQLAGTIPLAIGELKSIQILFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIP 418
            +  N L G +P ++GEL  ++ + L  N L G IPSSLGN++ LT L L  N+ +G IP
Sbjct: 407 DLGENLLTGKLPPSLGELSELRKVLLYSNGLSGEIPSSLGNISGLTYLYLLNNSFEGSIP 466

Query: 419 PSNGNCQNLILLTTRKNKLSGIVPRQLLRIITLSVLLDLSDNLLSGHFPTKVGNLKNLVS 478
            S G+C  L+ L    NKL+G +P +L+ + +L V+L++S NLL G     +G LK L++
Sbjct: 467 SSLGSCSYLLDLNLGTNKLNGSIPHELMELPSL-VVLNVSFNLLVGPLRQDIGKLKFLLA 525

Query: 479 LDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTISIPSTLSSLKSITELDLSRNNLSGHI 538
           LD+S N  SG+IP TL  C SLE+L +Q NSF   IP  +  L  +  LDLS+NNLSG I
Sbjct: 526 LDVSYNKLSGQIPQTLANCLSLEFLLLQGNSFVGPIPD-IRGLTGLRFLDLSKNNLSGTI 584

Query: 539 PQYLENLSFLLFLNMSYNHFEGKVPIE 565
           P+Y+ N S L  LN+S N+F+G VP E
Sbjct: 585 PEYMANFSKLQNLNLSLNNFDGAVPTE 611

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGP4|Y3475_ARATH Probable LRR receptor-like serine/threonine-protein kinase At3g47570 OS=Arabidopsis thaliana GN=At3g47570 PE=1 SV=1

 Score =  417 bits (1073), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 241/567 (42%), Positives = 357/567 (62%), Gaps = 5/567 (0%)

Query: 1   MKSQL-QDPLGVTSSWNNSINLCQWTGVTCGHRRQRVTGLDLRHQSVGGVLSPFVGNLNF 59
            KSQ+ +D   V SSWN+S  LC W GVTCG + +RVT L+L    +GGV+SP +GNL+F
Sbjct: 32  FKSQVSEDKRVVLSSWNHSFPLCNWKGVTCGRKNKRVTHLELGRLQLGGVISPSIGNLSF 91

Query: 60  LRSINLPNNSFRGKIPHEVGNLFRLQNLTLTNNYFLGKILTDLSHCSNLMKFEASNNKLE 119
           L S++L  N F G IP EVG L RL+ L +  NY  G I   L +CS L+     +N+L 
Sbjct: 92  LVSLDLYENFFGGTIPQEVGQLSRLEYLDMGINYLRGPIPLGLYNCSRLLNLRLDSNRLG 151

Query: 120 GEIPVKISNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRN 179
           G +P ++ +L  L  LN+  N+++G+LP S+GNL+ L+++ +  N L G IPS ++ +  
Sbjct: 152 GSVPSELGSLTNLVQLNLYGNNMRGKLPTSLGNLTLLEQLALSHNNLEGEIPSDVAQLTQ 211

Query: 180 LISFNVAYNQFSGMIPP-IYNISSLQYIFIHTNRFHGSVPLDNGVNLPNLRYFSISGNNL 238
           + S  +  N FSG+ PP +YN+SSL+ + I  N F G +  D G+ LPNL  F++ GN  
Sbjct: 212 IWSLQLVANNFSGVFPPALYNLSSLKLLGIGYNHFSGRLRPDLGILLPNLLSFNMGGNYF 271

Query: 239 TGSLQDSLSNATNLQGLEINRNLFSGKVSINFSRLQNLSRLNLGENNLGTGTTNDLDFIT 298
           TGS+  +LSN + L+ L +N N  +G +   F  + NL  L L  N+LG+ ++ DL+F+T
Sbjct: 272 TGSIPTTLSNISTLERLGMNENNLTGSIP-TFGNVPNLKLLFLHTNSLGSDSSRDLEFLT 330

Query: 299 LLTNCTKLEVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQISDTIPDVIANLVNLNAL 358
            LTNCT+LE L +  NR GG LP S+ANLS  +  + +G   IS +IP  I NL+NL  L
Sbjct: 331 SLTNCTQLETLGIGRNRLGGDLPISIANLSAKLVTLDLGGTLISGSIPYDIGNLINLQKL 390

Query: 359 GVESNQLAGTIPLAIGELKSIQILFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIP 418
            ++ N L+G +P ++G+L +++ L L  N L G IP+ +GN+T+L  L L  N  +G +P
Sbjct: 391 ILDQNMLSGPLPTSLGKLLNLRYLSLFSNRLSGGIPAFIGNMTMLETLDLSNNGFEGIVP 450

Query: 419 PSNGNCQNLILLTTRKNKLSGIVPRQLLRIITLSVLLDLSDNLLSGHFPTKVGNLKNLVS 478
            S GNC +L+ L    NKL+G +P ++++I  L + LD+S N L G  P  +G L+NL +
Sbjct: 451 TSLGNCSHLLELWIGDNKLNGTIPLEIMKIQQL-LRLDMSGNSLIGSLPQDIGALQNLGT 509

Query: 479 LDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTISIPSTLSSLKSITELDLSRNNLSGHI 538
           L +  N  SG++P TLG C ++E L ++ N F   IP  L  L  + E+DLS N+LSG I
Sbjct: 510 LSLGDNKLSGKLPQTLGNCLTMESLFLEGNLFYGDIPD-LKGLVGVKEVDLSNNDLSGSI 568

Query: 539 PQYLENLSFLLFLNMSYNHFEGKVPIE 565
           P+Y  + S L +LN+S+N+ EGKVP++
Sbjct: 569 PEYFASFSKLEYLNLSFNNLEGKVPVK 595

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FL28|FLS2_ARATH LRR receptor-like serine/threonine-protein kinase FLS2 OS=Arabidopsis thaliana GN=FLS2 PE=1 SV=1

 Score =  290 bits (741), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 198/563 (35%), Positives = 291/563 (51%), Gaps = 20/563 (3%)

Query: 7   DPLGVTSSWN--NSINLCQWTGVTC---GHRRQRVTGLDLRHQSVGGVLSPFVGNLNFLR 61
           DPLGV S W    S+  C WTG+TC   GH    V  + L  + + GVLSP + NL +L+
Sbjct: 44  DPLGVLSDWTIIGSLRHCNWTGITCDSTGH----VVSVSLLEKQLEGVLSPAIANLTYLQ 99

Query: 62  SINLPNNSFRGKIPHEVGNLFRLQNLTLTNNYFLGKILTDLSHCSNLMKFEASNNKLEGE 121
            ++L +NSF GKIP E+G L  L  L L  NYF G I + +    N+   +  NN L G+
Sbjct: 100 VLDLTSNSFTGKIPAEIGKLTELNQLILYLNYFSGSIPSGIWELKNIFYLDLRNNLLSGD 159

Query: 122 IPVKISNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLI 181
           +P +I     L ++    N+L G++P  +G+L  LQ     GN L G IP +I  + NL 
Sbjct: 160 VPEEICKTSSLVLIGFDYNNLTGKIPECLGDLVHLQMFVAAGNHLTGSIPVSIGTLANLT 219

Query: 182 SFNVAYNQFSGMIPPIY-NISSLQYIFIHTNRFHGSVPLDNGVNLPNLRYFSISGNNLTG 240
             +++ NQ +G IP  + N+ +LQ + +  N   G +P + G N  +L    +  N LTG
Sbjct: 220 DLDLSGNQLTGKIPRDFGNLLNLQSLVLTENLLEGDIPAEIG-NCSSLVQLELYDNQLTG 278

Query: 241 SLQDSLSNATNLQGLEINRNLFSGKVSINFSRLQNLSRLNLGENNLGTGTTNDLDFITLL 300
            +   L N   LQ L I +N  +  +  +  RL  L+ L L EN+L    + ++ F+   
Sbjct: 279 KIPAELGNLVQLQALRIYKNKLTSSIPSSLFRLTQLTHLGLSENHLVGPISEEIGFL--- 335

Query: 301 TNCTKLEVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQISDTIPDVIANLVNLNALGV 360
                LEVL LHSN F G  P S+ NL   +T + +G N IS  +P  +  L NL  L  
Sbjct: 336 ---ESLEVLTLHSNNFTGEFPQSITNLR-NLTVLTVGFNNISGELPADLGLLTNLRNLSA 391

Query: 361 ESNQLAGTIPLAIGELKSIQILFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPS 420
             N L G IP +I     +++L L+ N + G IP   G +  LT + +  N+  G+IP  
Sbjct: 392 HDNLLTGPIPSSISNCTGLKLLDLSHNQMTGEIPRGFGRMN-LTFISIGRNHFTGEIPDD 450

Query: 421 NGNCQNLILLTTRKNKLSGIVPRQLLRIITLSVLLDLSDNLLSGHFPTKVGNLKNLVSLD 480
             NC NL  L+   N L+G +   + ++  L + L +S N L+G  P ++GNLK+L  L 
Sbjct: 451 IFNCSNLETLSVADNNLTGTLKPLIGKLQKLRI-LQVSYNSLTGPIPREIGNLKDLNILY 509

Query: 481 ISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTISIPSTLSSLKSITELDLSRNNLSGHIPQ 540
           + SN F+G IP  +   T L+ L M  N     IP  +  +K ++ LDLS N  SG IP 
Sbjct: 510 LHSNGFTGRIPREMSNLTLLQGLRMYSNDLEGPIPEEMFDMKLLSVLDLSNNKFSGQIPA 569

Query: 541 YLENLSFLLFLNMSYNHFEGKVP 563
               L  L +L++  N F G +P
Sbjct: 570 LFSKLESLTYLSLQGNKFNGSIP 592

Constitutes the pattern-recognition receptor (PPR) that determines the specific perception of flagellin (flg22), a potent elicitor of the defense response to pathogen-associated molecular patterns (PAMPs). Flagellin-binding to the receptor is the first step to initiate the innate immune MAP kinase signaling cascade (MEKK1, MKK4/MKK5 and MPK3/MPK6), resulting in enhanced resistance against pathogens. Binding to the effector AvrPto1 from Pseudomonas syringae blocks the downstream plant immune response.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|O49545|BAME1_ARATH Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 OS=Arabidopsis thaliana GN=BAM1 PE=1 SV=1

 Score =  268 bits (684), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 183/554 (33%), Positives = 297/554 (53%), Gaps = 12/554 (2%)

Query: 13  SSWNNSINLCQWTGVTCGHRRQRVTGLDLRHQSVGGVLSPFVGNLNFLRSINLPNNSFRG 72
           SSW  S + C W GVTC   R+ VT LDL   ++ G LSP V +L  L++++L  N   G
Sbjct: 48  SSWKVSTSFCTWIGVTCDVSRRHVTSLDLSGLNLSGTLSPDVSHLRLLQNLSLAENLISG 107

Query: 73  KIPHEVGNLFRLQNLTLTNNYFLGKILTDLSH-CSNLMKFEASNNKLEGEIPVKISNLLM 131
            IP E+ +L  L++L L+NN F G    ++S    NL   +  NN L G++PV ++NL  
Sbjct: 108 PIPPEISSLSGLRHLNLSNNVFNGSFPDEISSGLVNLRVLDVYNNNLTGDLPVSVTNLTQ 167

Query: 132 LQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVAY-NQF 190
           L+ L++  N+  G++P S G+   ++ + V GN L G+IP  I ++  L    + Y N F
Sbjct: 168 LRHLHLGGNYFAGKIPPSYGSWPVIEYLAVSGNELVGKIPPEIGNLTTLRELYIGYYNAF 227

Query: 191 SGMIPP-IYNISSLQYIFIHTNRFHGSVPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNA 249
              +PP I N+S L           G +P + G  L  L    +  N  +G L   L   
Sbjct: 228 EDGLPPEIGNLSELVRFDGANCGLTGEIPPEIG-KLQKLDTLFLQVNVFSGPLTWELGTL 286

Query: 250 TNLQGLEINRNLFSGKVSINFSRLQNLSRLNLGENNLGTGTTNDLDFITLLTNCTKLEVL 309
           ++L+ ++++ N+F+G++  +F+ L+NL+ LNL  N L        +    + +  +LEVL
Sbjct: 287 SSLKSMDLSNNMFTGEIPASFAELKNLTLLNLFRNKLHG------EIPEFIGDLPELEVL 340

Query: 310 DLHSNRFGGVLPFSLANLSTTMTEIAIGSNQISDTIPDVIANLVNLNALGVESNQLAGTI 369
            L  N F G +P  L   +  +  + + SN+++ T+P  + +   L  L    N L G+I
Sbjct: 341 QLWENNFTGSIPQKLGE-NGKLNLVDLSSNKLTGTLPPNMCSGNKLETLITLGNFLFGSI 399

Query: 370 PLAIGELKSIQILFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSNGNCQNLIL 429
           P ++G+ +S+  + + ENFL G+IP  L  L  LTQ+ L+ N L G++P + G   NL  
Sbjct: 400 PDSLGKCESLTRIRMGENFLNGSIPKGLFGLPKLTQVELQDNYLSGELPVAGGVSVNLGQ 459

Query: 430 LTTRKNKLSGIVPRQLLRIITLSVLLDLSDNLLSGHFPTKVGNLKNLVSLDISSNMFSGE 489
           ++   N+LSG +P  +     +  LL L  N   G  P++VG L+ L  +D S N+FSG 
Sbjct: 460 ISLSNNQLSGPLPPAIGNFTGVQKLL-LDGNKFQGPIPSEVGKLQQLSKIDFSHNLFSGR 518

Query: 490 IPTTLGGCTSLEYLGMQDNSFTISIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLL 549
           I   +  C  L ++ +  N  +  IP+ ++++K +  L+LSRN+L G IP  + ++  L 
Sbjct: 519 IAPEISRCKLLTFVDLSRNELSGEIPNEITAMKILNYLNLSRNHLVGSIPGSISSMQSLT 578

Query: 550 FLNMSYNHFEGKVP 563
            L+ SYN+  G VP
Sbjct: 579 SLDFSYNNLSGLVP 592

Necessary for male gametophyte development, as well as ovule specification and function. Involved in cell-cell communication process required during early anther development, and regulating cell division and differentiation to organize cell layers. Required for the development of high-ordered vascular strands within the leaf and a correlated control of leaf shape, size and symmetry. May regulate the CLV1-dependent CLV3-mediated signaling in meristems maintenance.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9M2Z1|BAME2_ARATH Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM2 OS=Arabidopsis thaliana GN=BAM2 PE=1 SV=1

 Score =  265 bits (677), Expect = 8e-70,   Method: Compositional matrix adjust.
 Identities = 187/555 (33%), Positives = 300/555 (54%), Gaps = 13/555 (2%)

Query: 13  SSWNNSINLCQWTGVTCGHRRQRVTGLDLRHQSVGGVLSPFVGNLNFLRSINLPNNSFRG 72
           +SWN S   C WTGVTC    + VT LDL   ++ G LS  V +L  L++++L  N   G
Sbjct: 48  TSWNLSTTFCSWTGVTCDVSLRHVTSLDLSGLNLSGTLSSDVAHLPLLQNLSLAANQISG 107

Query: 73  KIPHEVGNLFRLQNLTLTNNYFLGKILTDLSH-CSNLMKFEASNNKLEGEIPVKISNLLM 131
            IP ++ NL+ L++L L+NN F G    +LS    NL   +  NN L G++PV ++NL  
Sbjct: 108 PIPPQISNLYELRHLNLSNNVFNGSFPDELSSGLVNLRVLDLYNNNLTGDLPVSLTNLTQ 167

Query: 132 LQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVA-YNQF 190
           L+ L++  N+  G++PA+ G    L+ + V GN L G+IP  I ++  L    +  YN F
Sbjct: 168 LRHLHLGGNYFSGKIPATYGTWPVLEYLAVSGNELTGKIPPEIGNLTTLRELYIGYYNAF 227

Query: 191 SGMIPP-IYNISSLQYIFIHTNRFHGSVPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNA 249
              +PP I N+S L           G +P + G  L  L    +  N  TG++   L   
Sbjct: 228 ENGLPPEIGNLSELVRFDAANCGLTGEIPPEIG-KLQKLDTLFLQVNAFTGTITQELGLI 286

Query: 250 TNLQGLEINRNLFSGKVSINFSRLQNLSRLNLGENNLGTGTTNDLDFITLLTNCTKLEVL 309
           ++L+ ++++ N+F+G++  +FS+L+NL+ LNL  N L        +FI  +    +LEVL
Sbjct: 287 SSLKSMDLSNNMFTGEIPTSFSQLKNLTLLNLFRNKLYGAIP---EFIGEM---PELEVL 340

Query: 310 DLHSNRFGGVLPFSLANLSTTMTEIAIGSNQISDTIPDVIANLVNLNALGVESNQLAGTI 369
            L  N F G +P  L   +  +  + + SN+++ T+P  + +   L  L    N L G+I
Sbjct: 341 QLWENNFTGSIPQKLGE-NGRLVILDLSSNKLTGTLPPNMCSGNRLMTLITLGNFLFGSI 399

Query: 370 PLAIGELKSIQILFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSNGNCQ-NLI 428
           P ++G+ +S+  + + ENFL G+IP  L  L  L+Q+ L+ N L G++P S G    +L 
Sbjct: 400 PDSLGKCESLTRIRMGENFLNGSIPKELFGLPKLSQVELQDNYLTGELPISGGGVSGDLG 459

Query: 429 LLTTRKNKLSGIVPRQLLRIITLSVLLDLSDNLLSGHFPTKVGNLKNLVSLDISSNMFSG 488
            ++   N+LSG +P  +  +  +  LL L  N  SG  P ++G L+ L  LD S N+FSG
Sbjct: 460 QISLSNNQLSGSLPAAIGNLSGVQKLL-LDGNKFSGSIPPEIGRLQQLSKLDFSHNLFSG 518

Query: 489 EIPTTLGGCTSLEYLGMQDNSFTISIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFL 548
            I   +  C  L ++ +  N  +  IP+ L+ +K +  L+LSRN+L G IP  + ++  L
Sbjct: 519 RIAPEISRCKLLTFVDLSRNELSGDIPNELTGMKILNYLNLSRNHLVGSIPVTIASMQSL 578

Query: 549 LFLNMSYNHFEGKVP 563
             ++ SYN+  G VP
Sbjct: 579 TSVDFSYNNLSGLVP 593

Necessary for male gametophyte development, as well as ovule specification and function. Involved in cell-cell communication process required during early anther development, and regulating cell division and differentiation to organize cell layers. Required for the development of high-ordered vascular strands within the leaf and a correlated control of leaf shape, size and symmetry. May regulate the CLV1-dependent CLV3-mediated signaling in meristems maintenance.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FIZ3|GSO2_ARATH LRR receptor-like serine/threonine-protein kinase GSO2 OS=Arabidopsis thaliana GN=GSO2 PE=2 SV=2

 Score =  257 bits (657), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 177/524 (33%), Positives = 272/524 (51%), Gaps = 36/524 (6%)

Query: 41  LRHQSVGGVLSPFVGNLNFLRSINLPNNSFRGKIPHEVGNLFRLQNLTLTNNYFLGKILT 100
           L    + G +   + N   L+ ++L NN+  G+IP  +  L  L NL L NN   G + +
Sbjct: 344 LSETQLSGEIPAEISNCQSLKLLDLSNNTLTGQIPDSLFQLVELTNLYLNNNSLEGTLSS 403

Query: 101 DLSHCSNLMKFEASNNKLEGEIPVKISNLLMLQILNIAENHLKGQLPASIGNLSALQEID 160
            +S+ +NL +F   +N LEG++P +I  L  L+I+ + EN   G++P  IGN + LQEID
Sbjct: 404 SISNLTNLQEFTLYHNNLEGKVPKEIGFLGKLEIMYLYENRFSGEMPVEIGNCTRLQEID 463

Query: 161 VRGNRLGGRIPSTISHVRNLISFNVAYNQFSGMIPP-IYNISSLQYIFIHTNRFHGSVPL 219
             GNRL G IPS+I  +++L   ++  N+  G IP  + N   +  I +  N+  GS+P 
Sbjct: 464 WYGNRLSGEIPSSIGRLKDLTRLHLRENELVGNIPASLGNCHQMTVIDLADNQLSGSIPS 523

Query: 220 DNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINRNLFSGKVSINFSRLQNLSRL 279
             G  L  L  F I  N+L G+L DSL N  NL  +  + N F+G +S            
Sbjct: 524 SFGF-LTALELFMIYNNSLQGNLPDSLINLKNLTRINFSSNKFNGSISPL---------- 572

Query: 280 NLGENNLGTGTTNDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSN 339
                    G+++ L F             D+  N F G +P  L   ST +  + +G N
Sbjct: 573 --------CGSSSYLSF-------------DVTENGFEGDIPLELGK-STNLDRLRLGKN 610

Query: 340 QISDTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSIQILFLNENFLRGTIPSSLGN 399
           Q +  IP     +  L+ L +  N L+G IP+ +G  K +  + LN N+L G IP+ LG 
Sbjct: 611 QFTGRIPRTFGKISELSLLDISRNSLSGIIPVELGLCKKLTHIDLNNNYLSGVIPTWLGK 670

Query: 400 LTLLTQLILEVNNLQGKIPPSNGNCQNLILLTTRKNKLSGIVPRQLLRIITLSVLLDLSD 459
           L LL +L L  N   G +P    +  N++ L    N L+G +P+++  +  L+ L +L +
Sbjct: 671 LPLLGELKLSSNKFVGSLPTEIFSLTNILTLFLDGNSLNGSIPQEIGNLQALNAL-NLEE 729

Query: 460 NLLSGHFPTKVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLE-YLGMQDNSFTISIPSTL 518
           N LSG  P+ +G L  L  L +S N  +GEIP  +G    L+  L +  N+FT  IPST+
Sbjct: 730 NQLSGPLPSTIGKLSKLFELRLSRNALTGEIPVEIGQLQDLQSALDLSYNNFTGRIPSTI 789

Query: 519 SSLKSITELDLSRNNLSGHIPQYLENLSFLLFLNMSYNHFEGKV 562
           S+L  +  LDLS N L G +P  + ++  L +LN+SYN+ EGK+
Sbjct: 790 STLPKLESLDLSHNQLVGEVPGQIGDMKSLGYLNLSYNNLEGKL 833

Together with GSO1, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons. Involved in the nuclear division phase of megagametogenesis.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|O49318|Y2317_ARATH Probable leucine-rich repeat receptor-like protein kinase At2g33170 OS=Arabidopsis thaliana GN=At2g33170 PE=2 SV=1

 Score =  254 bits (650), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 199/613 (32%), Positives = 292/613 (47%), Gaps = 55/613 (8%)

Query: 5   LQDPLGVTSSWNN-SINLCQWTGVTCGHRRQR-------VTGLDLRHQSVGGVLSPFVGN 56
            QD L    +WN      C W GV C  +          VT LDL   ++ G++SP +G 
Sbjct: 48  FQDSLNRLHNWNGIDETPCNWIGVNCSSQGSSSSSNSLVVTSLDLSSMNLSGIVSPSIGG 107

Query: 57  LNFLRSINLPNNSFRGKIPHEVGNLFRLQNLTLTNNYFLGKILTDLSHCSNLMKFEASNN 116
           L  L  +NL  N+  G IP E+GN  +L+ + L NN F G I  +++  S L  F   NN
Sbjct: 108 LVNLVYLNLAYNALTGDIPREIGNCSKLEVMFLNNNQFGGSIPVEINKLSQLRSFNICNN 167

Query: 117 KLEGEIPVKISNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISH 176
           KL G +P +I +L  L+ L    N+L G LP S+GNL+ L       N   G IP+ I  
Sbjct: 168 KLSGPLPEEIGDLYNLEELVAYTNNLTGPLPRSLGNLNKLTTFRAGQNDFSGNIPTEIGK 227

Query: 177 VRNLISFNVAYNQFSGMIPP-IYNISSLQYIFIHTNRFHGSVPLDNGVNLPNLRYFSISG 235
             NL    +A N  SG +P  I  +  LQ + +  N+F G +P D G NL +L   ++ G
Sbjct: 228 CLNLKLLGLAQNFISGELPKEIGMLVKLQEVILWQNKFSGFIPKDIG-NLTSLETLALYG 286

Query: 236 NNLTGSLQDSLSNATNLQGL------------------------EINRNLFSGKVSINFS 271
           N+L G +   + N  +L+ L                        + + NL SG++ +  S
Sbjct: 287 NSLVGPIPSEIGNMKSLKKLYLYQNQLNGTIPKELGKLSKVMEIDFSENLLSGEIPVELS 346

Query: 272 RLQNLSRLNLGENNLGTGTTNDLDFITLLT------------------NCTKLEVLDLHS 313
           ++  L  L L +N L     N+L  +  L                   N T +  L L  
Sbjct: 347 KISELRLLYLFQNKLTGIIPNELSKLRNLAKLDLSINSLTGPIPPGFQNLTSMRQLQLFH 406

Query: 314 NRFGGVLPFSLANLSTTMTEIAIGSNQISDTIPDVIANLVNLNALGVESNQLAGTIPLAI 373
           N   GV+P  L  L + +  +    NQ+S  IP  I    NL  L + SN++ G IP  +
Sbjct: 407 NSLSGVIPQGLG-LYSPLWVVDFSENQLSGKIPPFICQQSNLILLNLGSNRIFGNIPPGV 465

Query: 374 GELKSIQILFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSNGNCQNLILLTTR 433
              KS+  L +  N L G  P+ L  L  L+ + L+ N   G +PP  G CQ L  L   
Sbjct: 466 LRCKSLLQLRVVGNRLTGQFPTELCKLVNLSAIELDQNRFSGPLPPEIGTCQKLQRLHLA 525

Query: 434 KNKLSGIVPRQLLRIITLSVLLDLSDNLLSGHFPTKVGNLKNLVSLDISSNMFSGEIPTT 493
            N+ S  +P ++ ++  L V  ++S N L+G  P+++ N K L  LD+S N F G +P  
Sbjct: 526 ANQFSSNLPNEISKLSNL-VTFNVSSNSLTGPIPSEIANCKMLQRLDLSRNSFIGSLPPE 584

Query: 494 LGGCTSLEYLGMQDNSFTISIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFL-LFLN 552
           LG    LE L + +N F+ +IP T+ +L  +TEL +  N  SG IP  L  LS L + +N
Sbjct: 585 LGSLHQLEILRLSENRFSGNIPFTIGNLTHLTELQMGGNLFSGSIPPQLGLLSSLQIAMN 644

Query: 553 MSYNHFEGKVPIE 565
           +SYN F G++P E
Sbjct: 645 LSYNDFSGEIPPE 657

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGQ5|GSO1_ARATH LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana GN=GSO1 PE=2 SV=1

 Score =  254 bits (648), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 192/607 (31%), Positives = 302/607 (49%), Gaps = 51/607 (8%)

Query: 4   QLQDPLGVTSSWN-NSINLCQWTGVTCGHRRQ-RVTGLDLRHQSVGGVLSPFVGNLNFLR 61
           Q  DPL     WN ++IN C WTGVTC +    RV  L+L    + G +SP+ G  + L 
Sbjct: 42  QEDDPL---RQWNSDNINYCSWTGVTCDNTGLFRVIALNLTGLGLTGSISPWFGRFDNLI 98

Query: 62  SINLPNNSFRGKIPHEVGNLFRLQNLTLTNNYFLGKILTDLSHCSNLMKFEASNNKLEGE 121
            ++L +N+  G IP  + NL  L++L L +N   G+I + L    N+      +N+L G+
Sbjct: 99  HLDLSSNNLVGPIPTALSNLTSLESLFLFSNQLTGEIPSQLGSLVNIRSLRIGDNELVGD 158

Query: 122 IPVKISNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLI 181
           IP  + NL+ LQ+L +A   L G +P+ +G L  +Q + ++ N L G IP+ + +  +L 
Sbjct: 159 IPETLGNLVNLQMLALASCRLTGPIPSQLGRLVRVQSLILQDNYLEGPIPAELGNCSDLT 218

Query: 182 SFNVAYNQFSGMIPP-IYNISSLQYIFIHTNRFHGSVPLDNGVNLPNLRYFSISGNNLTG 240
            F  A N  +G IP  +  + +L+ + +  N   G +P   G  +  L+Y S+  N L G
Sbjct: 219 VFTAAENMLNGTIPAELGRLENLEILNLANNSLTGEIPSQLG-EMSQLQYLSLMANQLQG 277

Query: 241 SLQDSLSNATNLQGLEINRNLFSGKVSINFSRLQNLSRLNLGENNLG------------- 287
            +  SL++  NLQ L+++ N  +G++   F  +  L  L L  N+L              
Sbjct: 278 LIPKSLADLGNLQTLDLSANNLTGEIPEEFWNMSQLLDLVLANNHLSGSLPKSICSNNTN 337

Query: 288 ------TGTTNDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQI 341
                 +GT    +    L+ C  L+ LDL +N   G +P +L  L   +T++ + +N +
Sbjct: 338 LEQLVLSGTQLSGEIPVELSKCQSLKQLDLSNNSLAGSIPEALFEL-VELTDLYLHNNTL 396

Query: 342 SDTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSIQILFLNENFLRGTIPSSLGNLT 401
             T+   I+NL NL  L +  N L G +P  I  L+ +++LFL EN   G IP  +GN T
Sbjct: 397 EGTLSPSISNLTNLQWLVLYHNNLEGKLPKEISALRKLEVLFLYENRFSGEIPQEIGNCT 456

Query: 402 LLTQLILEVNNLQGKIPPSNGNCQNLILLTTRKNKLSGIVPRQLLRIITLSVLLDLSDNL 461
            L  + +  N+ +G+IPPS G  + L LL  R+N+L G +P  L     L++ LDL+DN 
Sbjct: 457 SLKMIDMFGNHFEGEIPPSIGRLKELNLLHLRQNELVGGLPASLGNCHQLNI-LDLADNQ 515

Query: 462 LSGHFPTKVGNLKNLVSLDISSNMFSGEIPTTLGG---------------------CTSL 500
           LSG  P+  G LK L  L + +N   G +P +L                       C S 
Sbjct: 516 LSGSIPSSFGFLKGLEQLMLYNNSLQGNLPDSLISLRNLTRINLSHNRLNGTIHPLCGSS 575

Query: 501 EYLGMQ--DNSFTISIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLLFLNMSYNHF 558
            YL     +N F   IP  L + +++  L L +N L+G IP  L  +  L  L+MS N  
Sbjct: 576 SYLSFDVTNNGFEDEIPLELGNSQNLDRLRLGKNQLTGKIPWTLGKIRELSLLDMSSNAL 635

Query: 559 EGKVPIE 565
            G +P++
Sbjct: 636 TGTIPLQ 642

Together with GSO2, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9SHI2|Y1723_ARATH Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 OS=Arabidopsis thaliana GN=At1g17230 PE=2 SV=2

 Score =  254 bits (648), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 195/591 (32%), Positives = 282/591 (47%), Gaps = 36/591 (6%)

Query: 1   MKSQLQDPLGVTSSWNN-SINLCQWTGVTCGHRRQRVTGLDLRHQSVGGVLSPFVGNLNF 59
            K+ L D  G  +SWN    N C WTG+ C H R  VT +DL   ++ G LSP +  L+ 
Sbjct: 34  FKAFLNDSNGYLASWNQLDSNPCNWTGIACTHLRT-VTSVDLNGMNLSGTLSPLICKLHG 92

Query: 60  LRSINLPNNSFRGKIPHEVGNLFRLQNLTLTNNYFLGKILTDLSHCSNLMKFEASNNKLE 119
           LR +N+  N   G IP ++     L+ L L  N F G I   L+    L K     N L 
Sbjct: 93  LRKLNVSTNFISGPIPQDLSLCRSLEVLDLCTNRFHGVIPIQLTMIITLKKLYLCENYLF 152

Query: 120 GEIPVKISNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTIS---- 175
           G IP +I NL  LQ L I  N+L G +P S+  L  L+ I    N   G IPS IS    
Sbjct: 153 GSIPRQIGNLSSLQELVIYSNNLTGVIPPSMAKLRQLRIIRAGRNGFSGVIPSEISGCES 212

Query: 176 --------------------HVRNLISFNVAYNQFSGMIPP-IYNISSLQYIFIHTNRFH 214
                                ++NL    +  N+ SG IPP + NIS L+ + +H N F 
Sbjct: 213 LKVLGLAENLLEGSLPKQLEKLQNLTDLILWQNRLSGEIPPSVGNISRLEVLALHENYFT 272

Query: 215 GSVPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINRNLFSGKVSINFSRLQ 274
           GS+P + G  L  ++   +  N LTG +   + N  +   ++ + N  +G +   F  + 
Sbjct: 273 GSIPREIG-KLTKMKRLYLYTNQLTGEIPREIGNLIDAAEIDFSENQLTGFIPKEFGHIL 331

Query: 275 NLSRLNLGENNLGTGTTNDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSTTMTEI 334
           NL  L+L EN L      +L  +TLL      E LDL  NR  G +P  L  L   + ++
Sbjct: 332 NLKLLHLFENILLGPIPRELGELTLL------EKLDLSINRLNGTIPQELQFLPY-LVDL 384

Query: 335 AIGSNQISDTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSIQILFLNENFLRGTIP 394
            +  NQ+   IP +I    N + L + +N L+G IP      +++ +L L  N L G IP
Sbjct: 385 QLFDNQLEGKIPPLIGFYSNFSVLDMSANSLSGPIPAHFCRFQTLILLSLGSNKLSGNIP 444

Query: 395 SSLGNLTLLTQLILEVNNLQGKIPPSNGNCQNLILLTTRKNKLSGIVPRQLLRIITLSVL 454
             L     LT+L+L  N L G +P    N QNL  L   +N LSG +   L ++  L  L
Sbjct: 445 RDLKTCKSLTKLMLGDNQLTGSLPIELFNLQNLTALELHQNWLSGNISADLGKLKNLERL 504

Query: 455 LDLSDNLLSGHFPTKVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTISI 514
             L++N  +G  P ++GNL  +V  +ISSN  +G IP  LG C +++ L +  N F+  I
Sbjct: 505 -RLANNNFTGEIPPEIGNLTKIVGFNISSNQLTGHIPKELGSCVTIQRLDLSGNKFSGYI 563

Query: 515 PSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLLFLNMSYNHFEGKVPIE 565
              L  L  +  L LS N L+G IP    +L+ L+ L +  N     +P+E
Sbjct: 564 AQELGQLVYLEILRLSDNRLTGEIPHSFGDLTRLMELQLGGNLLSENIPVE 614

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	566
255577438	1028	receptor-kinase, putative [Ricinus commu	0.987	0.543	0.456	1e-135
224116466	1008	predicted protein [Populus trichocarpa]	0.994	0.558	0.473	1e-134
224115346	1017	predicted protein [Populus trichocarpa]	0.989	0.550	0.489	1e-133
255581223	1015	receptor-kinase, putative [Ricinus commu	0.985	0.549	0.483	1e-131
224127492	1022	predicted protein [Populus trichocarpa]	0.996	0.551	0.470	1e-130
224097752	1025	predicted protein [Populus trichocarpa]	0.996	0.550	0.455	1e-130
224135241	985	predicted protein [Populus trichocarpa]	0.973	0.559	0.458	1e-129
449441592	1023	PREDICTED: probable LRR receptor-like se	0.994	0.550	0.460	1e-128
224097750	1023	predicted protein [Populus trichocarpa]	0.996	0.551	0.452	1e-127
255585471	963	serine-threonine protein kinase, plant-t	0.977	0.574	0.473	1e-127

>gi|255577438|ref|XP_002529598.1| receptor-kinase, putative [Ricinus communis] gi|223530931|gb|EEF32790.1| receptor-kinase, putative [Ricinus communis]

 Score =  487 bits (1253), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 256/561 (45%), Positives = 372/561 (66%), Gaps = 2/561 (0%)

Query: 6   QDPLGVTSSWNNSINLCQWTGVTCGHRRQRVTGLDLRHQSVGGVLSPFVGNLNFLRSINL 65
            DPL + SSWN S++ C+W+G+TCG R QRV  +DL    + G L+ F+GNL+FLR +NL
Sbjct: 48  DDPLHILSSWNESLHFCKWSGITCGSRHQRVIEIDLESSRLSGSLTAFIGNLSFLRVLNL 107

Query: 66  PNNSFRGKIPHEVGNLFRLQNLTLTNNYFLGKILTDLSHCSNLMKFEASNNKLEGEIPVK 125
            NNS    IP E+G LFRL+ L L  N F G+I  ++S+CSNL+      N L G++P +
Sbjct: 108 QNNSLSHYIPQEIGRLFRLRTLILRRNSFSGEIPVNISYCSNLLTLRLGRNNLTGKLPAE 167

Query: 126 ISNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNV 185
           + +L  LQ+     N+L G++  S  NLS+L+ I    N   G IP++I  +++L +F++
Sbjct: 168 LKSLSKLQMFEFEINYLTGEISPSFSNLSSLEIIYGTRNNFHGEIPNSIGQLKSLQTFSL 227

Query: 186 AYNQFSGMIPP-IYNISSLQYIFIHTNRFHGSVPLDNGVNLPNLRYFSISGNNLTGSLQD 244
             + FSG+IPP I+N+SSL  + +  N+ HG++P D G +LP L    +  N  +GS+  
Sbjct: 228 GGSNFSGVIPPSIFNLSSLTILSVPINQLHGNLPPDLGQSLPKLEVLRLYANKFSGSIPP 287

Query: 245 SLSNATNLQGLEINRNLFSGKVSINFSRLQNLSRLNLGENNLGTGTTNDLDFITLLTNCT 304
           ++SNA+NL  L++++N F+GKV  + +RL NLS + + +NNLG G  +DL F+  L N T
Sbjct: 288 TISNASNLVALDVSQNNFTGKVP-SLARLHNLSYIGIHKNNLGNGEDDDLSFLYTLANNT 346

Query: 305 KLEVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQISDTIPDVIANLVNLNALGVESNQ 364
            LE+L +  N  GGVLP  L+N ST +  +A G N+I   IP  I NL+ L ALG E N+
Sbjct: 347 NLEILAITENNLGGVLPEMLSNFSTKLVHMAFGRNKIRGRIPSEIDNLIRLEALGFERNE 406

Query: 365 LAGTIPLAIGELKSIQILFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSNGNC 424
           L G+IP ++G+LK++  L+LN+N + G+IPSSLGN+T L+ + L+VNNL+G IP S GNC
Sbjct: 407 LTGSIPSSLGKLKNLIKLYLNDNNISGSIPSSLGNITSLSTISLKVNNLEGSIPSSLGNC 466

Query: 425 QNLILLTTRKNKLSGIVPRQLLRIITLSVLLDLSDNLLSGHFPTKVGNLKNLVSLDISSN 484
           Q ++L+   +N LSG +P++L+ I +LS+ LDLS+N  +G  P +VG L NL  LD+S N
Sbjct: 467 QQMLLMDLSRNNLSGTIPKELISIPSLSISLDLSENQFTGSLPMEVGGLVNLGYLDVSKN 526

Query: 485 MFSGEIPTTLGGCTSLEYLGMQDNSFTISIPSTLSSLKSITELDLSRNNLSGHIPQYLEN 544
             SGEIP +LG CT LE L +Q N+F  +IP +LSSL+ I +L+LS NNL+G IP +   
Sbjct: 527 KLSGEIPKSLGSCTRLETLYLQGNAFQGTIPVSLSSLRGINDLNLSHNNLTGQIPNFFAE 586

Query: 545 LSFLLFLNMSYNHFEGKVPIE 565
              L  L++SYN FEG+VP E
Sbjct: 587 FKSLEKLDLSYNDFEGEVPAE 607

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224116466|ref|XP_002331904.1| predicted protein [Populus trichocarpa] gi|222874576|gb|EEF11707.1| predicted protein [Populus trichocarpa]

 Score =  486 bits (1251), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 268/566 (47%), Positives = 376/566 (66%), Gaps = 3/566 (0%)

Query: 1   MKSQLQDPLGVTSSWNNSINLCQWTGVTCGHRRQRVTGLDLRHQSVGGVLSPFVGNLNFL 60
            K+Q+ DP    SSWN S++ CQW+GV CG + QRV  LDL    + G LSP +GNL+FL
Sbjct: 36  FKAQISDPTTKLSSWNESLHFCQWSGVKCGRQHQRVIELDLHSSQLVGSLSPSIGNLSFL 95

Query: 61  RSINLPNNSFRGKIPHEVGNLFRLQNLTLTNNYFLGKILTDLSHCSNLMKFEASNNKLEG 120
           R ++L NNSF   IP E+G L RLQ L L NN F G+I +++SHCSNL+K     N L G
Sbjct: 96  RLLSLENNSFTNAIPQEIGRLVRLQTLILGNNSFSGEIPSNISHCSNLLKLNLEGNNLTG 155

Query: 121 EIPVKISNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNL 180
            +P  + +L  LQ+ +  +N+L G++P S  NLS++ EID   N + G IPS+I  ++ L
Sbjct: 156 NLPAGLGSLSKLQVFSFRKNNLDGKIPLSFENLSSIIEIDGTLNNIQGGIPSSIGKLKTL 215

Query: 181 ISFNVAYNQFSGMIPP-IYNISSLQYIFIHTNRFHGSVPLDNGVNLPNLRYFSISGNNLT 239
             F++  N  SG IP  +YNISSL +  +  N+FHG++P + G+ LPNL+Y  I  N L+
Sbjct: 216 NFFSLGSNNLSGTIPASLYNISSLIHFSLPYNQFHGTLPPNIGLTLPNLQYLGIHDNRLS 275

Query: 240 GSLQDSLSNATNLQGLEINRNLFSGKVSINFSRLQNLSRLNLGENNLGTGTTNDLDFITL 299
           G L  +L NAT    + ++ N F+GKV    + + NL  L++ EN LG G  +DL F+  
Sbjct: 276 GQLPATLINATKFTEIYLSYNKFTGKVP-TLAIMPNLRILSMEENGLGKGEDDDLSFLYT 334

Query: 300 LTNCTKLEVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQISDTIPDVIANLVNLNALG 359
           L+N +KLE L + +N FGGVLP  ++N ST + ++A GSNQI  TIPD I NLV+L+ LG
Sbjct: 335 LSNSSKLEDLYIDNNNFGGVLPDIISNFSTKLKQMAFGSNQIRGTIPDGIGNLVSLDTLG 394

Query: 360 VESNQLAGTIPLAIGELKSIQILFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPP 419
           +E+N L G+IP +IG+L+++   FLNEN L G+IPSSLGN+T L Q+  + NNLQG IPP
Sbjct: 395 LEANHLTGSIPSSIGKLQNLADFFLNENKLSGSIPSSLGNITSLMQINFDQNNLQGSIPP 454

Query: 420 SNGNCQNLILLTTRKNKLSGIVPRQLLRIITLSVLLDLSDNLLSGHFPTKVGNLKNLVSL 479
           S GNCQNL++L   +N LSG +P+++L I +LS+ L LS+N L+G  P +VG L  L  +
Sbjct: 455 SLGNCQNLLVLALSQNNLSGPIPKEVLSISSLSMYLVLSENQLTGSLPFEVGKLVTLGYM 514

Query: 480 DISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTISIPSTLSSLKSITELDLSRNNLSGHIP 539
           DIS N  SGEIP +LG C SLE+L +  N     I  +L SL+++ +L+LS NNLSG IP
Sbjct: 515 DISKNRLSGEIPASLGSCESLEHLYLDGNFLQGPISESLRSLRALQDLNLSHNNLSGQIP 574

Query: 540 QYLENLSFLLFLNMSYNHFEGKVPIE 565
           ++L +L  L  L++S+N  EG+VP+ 
Sbjct: 575 KFLGDLK-LQSLDLSFNDLEGEVPMH 599

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224115346|ref|XP_002317009.1| predicted protein [Populus trichocarpa] gi|222860074|gb|EEE97621.1| predicted protein [Populus trichocarpa]

 Score =  483 bits (1242), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 275/562 (48%), Positives = 376/562 (66%), Gaps = 2/562 (0%)

Query: 5   LQDPLGVTSSWNNSINLCQWTGVTCGHRRQRVTGLDLRHQSVGGVLSPFVGNLNFLRSIN 64
           + DP  +  SWN+S++ CQW GV CG R +RVT L L    + G +SP +GNL+FL  ++
Sbjct: 51  IHDPQNIFGSWNDSLHFCQWQGVRCGRRHERVTVLKLESSGLVGSISPALGNLSFLWGLD 110

Query: 65  LPNNSFRGKIPHEVGNLFRLQNLTLTNNYFLGKILTDLSHCSNLMKFEASNNKLEGEIPV 124
           L NN+ +GKIP  +G LFRLQ L L NN F+G+I  +LSHCS L     ++N L G+IP 
Sbjct: 111 LSNNTLQGKIPDGLGRLFRLQILVLNNNSFVGEIPGNLSHCSKLDYLGLASNNLVGKIPA 170

Query: 125 KISNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFN 184
           ++ +L  L+ L I +N+L G +P  IGNL++L  I    N   GRIP T+  ++NL S  
Sbjct: 171 ELVSLSKLEKLVIHKNNLSGAIPPFIGNLTSLNSISAAANNFQGRIPDTLGQLKNLESLG 230

Query: 185 VAYNQFSGMIP-PIYNISSLQYIFIHTNRFHGSVPLDNGVNLPNLRYFSISGNNLTGSLQ 243
           +  N  SG IP PIYN+S+L  + +  N+  G +P D GV+LPNL+Y  I  N  +GS+ 
Sbjct: 231 LGTNFLSGTIPLPIYNLSTLSILSLSENQLQGYLPSDIGVSLPNLQYIQIRANQFSGSIP 290

Query: 244 DSLSNATNLQGLEINRNLFSGKVSINFSRLQNLSRLNLGENNLGTGTTNDLDFITLLTNC 303
            S+SN++NLQ LE   N FSGK+S+NF  L++L+ ++L  N +G+G   +L F+  L NC
Sbjct: 291 LSISNSSNLQVLEAGDNSFSGKLSVNFGGLKHLAVVSLSFNKMGSGEPGELSFLDSLINC 350

Query: 304 TKLEVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQISDTIPDVIANLVNLNALGVESN 363
           T L  +D+  N F G+LP SL NLST +T + +G NQ+   I   I NL+NLN LG+E N
Sbjct: 351 TSLYAIDIVGNHFEGMLPNSLGNLSTGLTFLGLGQNQLFGGIHSGIGNLINLNTLGLEFN 410

Query: 364 QLAGTIPLAIGELKSIQILFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSNGN 423
           QL+G IPL IG+L+ +Q   L+ N L G IPSS+GNLTLL +  L+ N LQG IP S GN
Sbjct: 411 QLSGPIPLDIGKLRMLQRFSLSYNRLSGHIPSSIGNLTLLLEFDLQGNQLQGTIPSSIGN 470

Query: 424 CQNLILLTTRKNKLSGIVPRQLLRIITLSVLLDLSDNLLSGHFPTKVGNLKNLVSLDISS 483
           CQ L+LL   +N LSG  P++L  I +LSV LDLS N  +G  P+++G+LK+L  L++S 
Sbjct: 471 CQKLLLLHLSRNNLSGNAPKELFAISSLSVSLDLSQNYFNGSLPSEIGSLKSLAKLNVSY 530

Query: 484 NMFSGEIPTTLGGCTSLEYLGMQDNSFTISIPSTLSSLKSITELDLSRNNLSGHIPQYLE 543
           N FSGEIP+TL  CTSLEYL MQ N F  SIPS+ S+L+ I +LDLS NNLSG IP++L+
Sbjct: 531 NEFSGEIPSTLASCTSLEYLYMQHNFFQGSIPSSFSTLRGIQKLDLSHNNLSGQIPKFLD 590

Query: 544 NLSFLLFLNMSYNHFEGKVPIE 565
             + LL LN+S+N FEG+VP +
Sbjct: 591 TFA-LLTLNLSFNDFEGEVPTK 611

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255581223|ref|XP_002531424.1| receptor-kinase, putative [Ricinus communis] gi|223528974|gb|EEF30966.1| receptor-kinase, putative [Ricinus communis]

 Score =  474 bits (1219), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 271/561 (48%), Positives = 365/561 (65%), Gaps = 3/561 (0%)

Query: 6   QDPLGVTSSWNNSINLCQWTGVTCGHRRQRVTGLDLRHQSVGGVLSPFVGNLNFLRSINL 65
            DPLG    WN+S + CQW GVTC  R QRV  L+LR   + G +SP +GNL+FLR + L
Sbjct: 47  DDPLGFMPLWNDSTHFCQWYGVTCSRRHQRVAILNLRSLQLAGSISPHIGNLSFLRDLYL 106

Query: 66  PNNSFRGKIPHEVGNLFRLQNLTLTNNYFLGKILTDLSHCSNLMKFEASNNKLEGEIPVK 125
            NNSF   IP EVG L RLQ L L+NN   G I +++S CS L +   + N+LEGEIP +
Sbjct: 107 QNNSFSHGIPPEVGRLRRLQRLRLSNNSLTGNIPSNISACSKLSEIYFAYNQLEGEIPEE 166

Query: 126 ISNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNV 185
           +S L  LQ+++I +N+  G +P SIGNLS+LQ +    N L G IP  I  + NLI  ++
Sbjct: 167 LSLLAKLQVISIQKNYFSGSIPPSIGNLSSLQVLSAPENYLSGNIPDAIGQLNNLIFISL 226

Query: 186 AYNQFSGMIPP-IYNISSLQYIFIHTNRFHGSVPLDNGVNLPNLRYFSISGNNLTGSLQD 244
           + N  SG IPP IYN+SS+  + I  N+  G +P + G+ LPNL+ F+I+ N+  GS+  
Sbjct: 227 SVNNLSGTIPPSIYNLSSINTLNIVYNQIQGRLPSNLGITLPNLQVFAIARNDFIGSIPS 286

Query: 245 SLSNATNLQGLEINRNLFSGKVSINFSRLQNLSRLNLGENNLGTGTTNDLDFITLLTNCT 304
           S SNA+NL  L ++ N  +G+V  +  +L NL  L LG N LG    NDLDF++ L NCT
Sbjct: 287 SFSNASNLVWLIMSENKLTGRVP-SLEQLHNLQILGLGYNYLGL-EANDLDFVSSLVNCT 344

Query: 305 KLEVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQISDTIPDVIANLVNLNALGVESNQ 364
            L  L++H+N+F GVLP S++N STT +++ I  N I+  IP  I+NLVNL  L + +NQ
Sbjct: 345 NLWRLEIHNNKFHGVLPESISNFSTTFSQLVIAENNIAGRIPSSISNLVNLERLEMANNQ 404

Query: 365 LAGTIPLAIGELKSIQILFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSNGNC 424
           L+G IP   G L  +++L L  N L GTIPSSLGNLT+L  L    NNLQG+IP S   C
Sbjct: 405 LSGNIPSNFGNLNMLKVLHLFGNKLSGTIPSSLGNLTMLLTLSFYDNNLQGRIPSSLAEC 464

Query: 425 QNLILLTTRKNKLSGIVPRQLLRIITLSVLLDLSDNLLSGHFPTKVGNLKNLVSLDISSN 484
           +NL++L   KN LSG +P Q+  + +LS+ LDLS N  +G  P +VGNLK+L  L IS N
Sbjct: 465 ENLMVLDLAKNNLSGSIPLQVFGLSSLSIALDLSANHFTGVIPMEVGNLKDLEQLGISDN 524

Query: 485 MFSGEIPTTLGGCTSLEYLGMQDNSFTISIPSTLSSLKSITELDLSRNNLSGHIPQYLEN 544
           M SG IP +LG C  LE L +Q N F   +PS+LSSL+ +  LD S NNLSG IP++L++
Sbjct: 525 MLSGRIPDSLGSCIKLEVLALQGNFFDGLVPSSLSSLRGLRVLDFSSNNLSGEIPEFLQS 584

Query: 545 LSFLLFLNMSYNHFEGKVPIE 565
              L  LN+SYN+FEG+VP+E
Sbjct: 585 FDLLESLNLSYNNFEGRVPVE 605

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127492|ref|XP_002329291.1| predicted protein [Populus trichocarpa] gi|222870745|gb|EEF07876.1| predicted protein [Populus trichocarpa]

 Score =  473 bits (1216), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 267/568 (47%), Positives = 364/568 (64%), Gaps = 4/568 (0%)

Query: 1   MKSQLQ-DPLGVTSSWNNSINLCQWTGVTCGHRRQRVTGLDLRHQSVGGVLSPFVGNLNF 59
            K+Q+  DPLG  SSWN S   CQW+GVTCG R QRV  LDL    + G LSP +GNL+F
Sbjct: 42  FKAQITGDPLGKLSSWNESSQFCQWSGVTCGRRHQRVVELDLHSYQLVGSLSPHIGNLSF 101

Query: 60  LRSINLPNNSFRGKIPHEVGNLFRLQNLTLTNNYFLGKILTDLSHCSNLMKFEASNNKLE 119
           LR +NL NNS    IP E+G LFRL+ L L NN F G I  ++S C+NL   + S   L 
Sbjct: 102 LRILNLANNSLSLYIPQELGRLFRLEELVLRNNTFDGGIPANISRCANLRILDFSRGNLT 161

Query: 120 GEIPVKISNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRN 179
           G++P ++  L  LQ+L I  N+  G++P S GNLSA+  I    N L G IP+    ++ 
Sbjct: 162 GKLPAELGLLSKLQVLTIELNNFVGEIPYSFGNLSAINAIYGSINNLEGSIPNVFGQLKR 221

Query: 180 LISFNVAYNQFSGMIPP-IYNISSLQYIFIHTNRFHGSVPLDNGVNLPNLRYFSISGNNL 238
           L   ++  N  SGMIPP I+N+SSL  +    N+ +GS+P   G+ LPNL+ F+I  N  
Sbjct: 222 LKILSLGANNLSGMIPPSIFNLSSLTLLSFPVNQLYGSLPHTLGLTLPNLQVFNIHTNQF 281

Query: 239 TGSLQDSLSNATNLQGLEINRNLFSGKVSINFSRLQNLSRLNLGENNLGTGTTNDLDFI- 297
            G +  + SNA+NL   +I  N F+GKV    S   +L  L +G+NNLG G  NDL+F+ 
Sbjct: 282 GGLIPATFSNASNLLSFQIGSNNFNGKVP-PLSSSHDLQVLGVGDNNLGKGENNDLNFVY 340

Query: 298 TLLTNCTKLEVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQISDTIPDVIANLVNLNA 357
            L  N T LE LD   N FGGVLP  ++N ST + ++    NQI  +IP  I NL+NL A
Sbjct: 341 PLANNMTSLEALDTSDNNFGGVLPEIVSNFSTKLMKMTFARNQIRGSIPTQIGNLINLEA 400

Query: 358 LGVESNQLAGTIPLAIGELKSIQILFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKI 417
           LG+E+NQL G IP ++G+L+ +  LFLN N + G IPSS+GN+T L ++ + +NNL+G I
Sbjct: 401 LGLETNQLTGMIPSSMGKLQKLSDLFLNGNKISGMIPSSMGNMTSLGRVNMRLNNLEGSI 460

Query: 418 PPSNGNCQNLILLTTRKNKLSGIVPRQLLRIITLSVLLDLSDNLLSGHFPTKVGNLKNLV 477
           PPS GN Q L+ L   +N LSG +P++L+ I +LS+ L LS+N L+G  P ++  L NL 
Sbjct: 461 PPSLGNWQKLLSLALSQNNLSGPIPKELVSIPSLSMYLVLSENELTGSLPIEMEKLVNLG 520

Query: 478 SLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTISIPSTLSSLKSITELDLSRNNLSGH 537
            LD+S N FSGEIP +LG C SLE L +++N     IP TLSSL++I EL+LS NNL+G 
Sbjct: 521 YLDVSKNRFSGEIPKSLGSCVSLESLHLEENFLQGPIPITLSSLRAIQELNLSYNNLTGQ 580

Query: 538 IPQYLENLSFLLFLNMSYNHFEGKVPIE 565
           IP++LE+   L  LN+S+N FEG+VP++
Sbjct: 581 IPEFLEDFKLLESLNLSFNDFEGEVPVQ 608

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224097752|ref|XP_002311067.1| predicted protein [Populus trichocarpa] gi|222850887|gb|EEE88434.1| predicted protein [Populus trichocarpa]

 Score =  470 bits (1210), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 258/567 (45%), Positives = 371/567 (65%), Gaps = 3/567 (0%)

Query: 1   MKSQLQ-DPLGVTSSWNNSINLCQWTGVTCGHRRQRVTGLDLRHQSVGGVLSPFVGNLNF 59
           +KSQ+  DP G+ SSWN S++ C W+GV CG R +RV  +DL    + G LSP +GNL+F
Sbjct: 42  LKSQITNDPFGMLSSWNESLHFCDWSGVICGKRHRRVVEIDLHSAQLVGSLSPHIGNLSF 101

Query: 60  LRSINLPNNSFRGKIPHEVGNLFRLQNLTLTNNYFLGKILTDLSHCSNLMKFEASNNKLE 119
           LR + L NN F   IP E+G+LFRL+ L+L NN F GKI  ++SHCSNL+    S N L 
Sbjct: 102 LRILKLENNRFSHNIPQELGHLFRLRMLSLENNTFDGKIPVNISHCSNLLILSLSGNNLT 161

Query: 120 GEIPVKISNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRN 179
           G++P+++ +L  LQ+     N+L G +P+S GNLSA+ +I   GN L G IP++I  +++
Sbjct: 162 GKLPIELGSLSKLQVFFFQFNYLVGGIPSSFGNLSAIIQIFGAGNYLQGGIPNSIGQLKS 221

Query: 180 LISFNVAYNQFSGMIPP-IYNISSLQYIFIHTNRFHGSVPLDNGVNLPNLRYFSISGNNL 238
           L SF+   N  +GMIPP IYN+SSL    +  N+ HG++P D G+ LPNL    +S N  
Sbjct: 222 LKSFSFGRNNMTGMIPPSIYNLSSLMRFAVPVNQLHGNLPPDLGLTLPNLEILLMSFNRF 281

Query: 239 TGSLQDSLSNATNLQGLEINRNLFSGKVSINFSRLQNLSRLNLGENNLGTGTTNDLDFIT 298
           +GS+  + SNA+ +  +E++ N  +G+V  + S L  L  L +  N LG G  +DL F+ 
Sbjct: 282 SGSIPPTFSNASTIAVIELSNNNLTGRVP-DLSSLSKLRWLIVDVNYLGNGNDDDLSFLP 340

Query: 299 LLTNCTKLEVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQISDTIPDVIANLVNLNAL 358
            L N T LE L ++ N FGG+LP  ++N S  +  +  G NQI  +IP  I NL+ L+ L
Sbjct: 341 PLANKTSLEELSINDNNFGGLLPKIISNFSENLKRMTFGRNQIRGSIPSGIGNLIGLDTL 400

Query: 359 GVESNQLAGTIPLAIGELKSIQILFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIP 418
           G+E NQL G IP +IG+L+++ +L L  N + G IPSS+GN+T L ++ L  NNLQG+IP
Sbjct: 401 GLEMNQLTGVIPNSIGKLQNLGVLALGGNKISGNIPSSMGNITSLLEVYLSANNLQGRIP 460

Query: 419 PSNGNCQNLILLTTRKNKLSGIVPRQLLRIITLSVLLDLSDNLLSGHFPTKVGNLKNLVS 478
            S GNCQNL++L   +N LSG +P++++ I + S +L LS+N L+G  P +VG L NL  
Sbjct: 461 SSLGNCQNLLILHLDQNNLSGSIPKEVISIPSSSRILVLSENQLTGSLPLEVGKLANLGY 520

Query: 479 LDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTISIPSTLSSLKSITELDLSRNNLSGHI 538
            ++S N  SGEIP TLG C SLE+L M+ N F   IP +LSSL+++  L+LS NNLSG I
Sbjct: 521 FNLSHNRLSGEIPRTLGSCVSLEFLYMEGNLFQGPIPESLSSLRALQILNLSHNNLSGEI 580

Query: 539 PQYLENLSFLLFLNMSYNHFEGKVPIE 565
           P++L  L  L  L++S+N+ EG+VP++
Sbjct: 581 PKFLAELKLLTSLDLSFNNLEGEVPVQ 607

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224135241|ref|XP_002327600.1| predicted protein [Populus trichocarpa] gi|222836154|gb|EEE74575.1| predicted protein [Populus trichocarpa]

 Score =  468 bits (1205), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 259/565 (45%), Positives = 364/565 (64%), Gaps = 14/565 (2%)

Query: 1   MKSQLQDPLGVTSSWNNSINLCQWTGVTCGHRRQRVTGLDLRHQSVGGVLSPFVGNLNFL 60
            K+Q+ DP    SSWN S+  CQW+GVTCG R QRV  LDL    + G LSP +GNL+FL
Sbjct: 14  FKAQISDPPEKLSSWNESLPFCQWSGVTCGRRHQRVIELDLHSSQLVGSLSPHIGNLSFL 73

Query: 61  RSINLPNNSFRGKIPHEVGNLFRLQNLTLTNNYFLGKILTDLSHCSNLMKFEASNNKLEG 120
           R + L NNSF   IP E+  L RLQ L L NN F G+I  ++SHCSNL+      N L G
Sbjct: 74  RLLRLENNSFTNTIPQEIDRLVRLQTLILGNNSFTGEIPANISHCSNLLSLNLEGNNLTG 133

Query: 121 EIPVKISNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNL 180
            +P  + +L  LQ+ +  +N+L G++P S  NLS++ EID   N L G IPS+I  ++ L
Sbjct: 134 NLPAGLGSLSKLQVFSFRKNNLGGKIPPSFENLSSIIEIDGTLNNLQGGIPSSIGKLKTL 193

Query: 181 ISFNVAYNQFSGMIP-PIYNISSLQYIFIHTNRFHGSVPLDNGVNLPNLRYFSISGNNLT 239
             F++  N  SG IP  +YNISSL ++ +  N+FHG++P + G+ LPNL+Y  I  N L+
Sbjct: 194 SFFSLGSNNLSGTIPLSLYNISSLLHLSLAHNQFHGTLPPNMGLTLPNLQYLGIHDNRLS 253

Query: 240 GSLQDSLSNATNLQGLEINRNLFSGKVSINFSRLQNLSRLNLGENNLGTGTTNDLDFITL 299
           G +  +L NAT   G+ ++ N F+GKV    + + NL  L++    LG G  +DL F+  
Sbjct: 254 GLIPATLINATKFTGIYLSYNEFTGKVP-TLASMPNLRVLSMQAIGLGNGEDDDLSFLYT 312

Query: 300 LTNCTKLEVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQISDTIPDVIANLVNLNALG 359
           L+N +KLE L ++ N FGGVLP  ++N ST + ++  GSNQI  +IPD I NLV+L+ LG
Sbjct: 313 LSNSSKLEALAINENNFGGVLPDIISNFSTKLKQMTFGSNQIRGSIPDGIGNLVSLDTLG 372

Query: 360 VESNQLAGTIPLAIGELKSIQILFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPP 419
           +E+N L G+IP +IG+L+++   FLNEN L G IPSSLGN+T L Q+  + NNLQG IPP
Sbjct: 373 LEANHLTGSIPSSIGKLQNLADFFLNENKLSGRIPSSLGNITSLMQINFDQNNLQGSIPP 432

Query: 420 SNGNCQNLILLTTRKNKLSGIVPRQLLRIITLSVLLDLSDNLLSGHFPTKVGNLKNLVSL 479
           S GNCQNL++L   +N LSG +P+++L I +LS+ L LS+N L+            L  +
Sbjct: 433 SLGNCQNLLVLALSQNNLSGPIPKEVLSISSLSMYLVLSENQLT------------LGYM 480

Query: 480 DISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTISIPSTLSSLKSITELDLSRNNLSGHIP 539
           DIS N  SGEIP +LG C SLE+L +  N F   I  +L SL+++ +L+LS NNL+G IP
Sbjct: 481 DISKNRLSGEIPASLGSCESLEHLSLDGNFFQGPISESLRSLRALQDLNLSHNNLTGQIP 540

Query: 540 QYLENLSFLLFLNMSYNHFEGKVPI 564
           ++L +   L  L++S+N  EG+VP+
Sbjct: 541 KFLGDFKLLQSLDLSFNDLEGEVPM 565

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449441592|ref|XP_004138566.1| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570-like [Cucumis sativus]

 Score =  464 bits (1194), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 261/567 (46%), Positives = 357/567 (62%), Gaps = 4/567 (0%)

Query: 1   MKSQLQ-DPLGVTSSWNNSINLCQWTGVTCGHRRQRVTGLDLRHQSVGGVLSPFVGNLNF 59
            KS++  DPLG+  SWN S++ C W GV C  +R RVT L+L      G LSP +GNL+F
Sbjct: 47  FKSEITVDPLGLFISWNESVHFCNWAGVICNPQR-RVTELNLPSYQFNGKLSPSIGNLSF 105

Query: 60  LRSINLPNNSFRGKIPHEVGNLFRLQNLTLTNNYFLGKILTDLSHCSNLMKFEASNNKLE 119
           L ++NLPNNSF G+IP E+G+L RLQ L   NNYF+G+I   +S+CS L      NN L 
Sbjct: 106 LTTLNLPNNSFGGEIPQEIGSLSRLQELDFRNNYFVGEIPITISNCSQLQYIGLLNNNLT 165

Query: 120 GEIPVKISNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRN 179
           G +P+++  L  L++   + N L G++P + GNLS+L+      N   G IPS+   +RN
Sbjct: 166 GVLPMELGLLTKLEVFQCSSNELFGEIPETFGNLSSLRGFWGTLNNFHGNIPSSFGQLRN 225

Query: 180 LISFNVAYNQFSGMIPP-IYNISSLQYIFIHTNRFHGSVPLDNGVNLPNLRYFSISGNNL 238
           L +  +  N+ SG IP  IYNISS++   +  N+  G +P + G   PNL+   I  N  
Sbjct: 226 LTALVIGANKLSGTIPSSIYNISSMRIFSLPVNQLEGGLPTNLGFIFPNLQILKIHTNQF 285

Query: 239 TGSLQDSLSNATNLQGLEINRNLFSGKVSINFSRLQNLSRLNLGENNLGTGTTNDLDFIT 298
           +G +  +LSNA+ L+   I+ N+FSGKV  + +  ++L    +  NNLG G  +DL+F+ 
Sbjct: 286 SGPIPFTLSNASKLEEFVISNNMFSGKVP-SLASTRHLEVFGIDRNNLGYGNVDDLNFLF 344

Query: 299 LLTNCTKLEVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQISDTIPDVIANLVNLNAL 358
            L NCT L  + +  N FGG LP  ++N ST +  I  G NQI  TIP  I NL  L AL
Sbjct: 345 PLVNCTNLSSVVISDNNFGGALPEYISNFSTKLRIIGFGRNQIHGTIPTEIGNLFQLEAL 404

Query: 359 GVESNQLAGTIPLAIGELKSIQILFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIP 418
           G+E+NQL G+IP + G+L  +  LFLN N L GTIP SLGNL+ L +  L +NNL G IP
Sbjct: 405 GLETNQLTGSIPSSFGKLYKLNDLFLNMNKLSGTIPKSLGNLSALGRCNLRLNNLTGAIP 464

Query: 419 PSNGNCQNLILLTTRKNKLSGIVPRQLLRIITLSVLLDLSDNLLSGHFPTKVGNLKNLVS 478
           PS G  Q+L++L   +N+LSG +P++LL I +LS+ LDLS+N L+G  P +VG L NL  
Sbjct: 465 PSLGESQSLLMLALSQNQLSGAIPKELLSISSLSIALDLSENYLTGSIPLEVGKLVNLGY 524

Query: 479 LDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTISIPSTLSSLKSITELDLSRNNLSGHI 538
           L IS NM +G IP+TL  CTSLE L +  N     IP +LSSL+ I ELDLSRNNLSG I
Sbjct: 525 LHISDNMLTGVIPSTLSACTSLEDLYLDGNFLEGPIPESLSSLRGIEELDLSRNNLSGKI 584

Query: 539 PQYLENLSFLLFLNMSYNHFEGKVPIE 565
           P YL+    L +LN+S+N+ EG+VP +
Sbjct: 585 PTYLQEFEVLSYLNLSFNNLEGEVPTQ 611

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224097750|ref|XP_002311066.1| predicted protein [Populus trichocarpa] gi|222850886|gb|EEE88433.1| predicted protein [Populus trichocarpa]

 Score =  463 bits (1191), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 256/566 (45%), Positives = 360/566 (63%), Gaps = 2/566 (0%)

Query: 1   MKSQLQDPLGVTSSWNNSINLCQWTGVTCGHRRQRVTGLDLRHQSVGGVLSPFVGNLNFL 60
            K+Q+ DPLG  SSWN S++ C+W+GV CG + +RV  LDL    + G LSP +GNL+FL
Sbjct: 41  FKTQISDPLGKLSSWNESLHFCEWSGVICGRKHRRVVELDLHSSQLAGSLSPHIGNLSFL 100

Query: 61  RSINLPNNSFRGKIPHEVGNLFRLQNLTLTNNYFLGKILTDLSHCSNLMKFEASNNKLEG 120
           R +NL  NSF   IP E+G LFR+Q L+L NN F G+I  ++S C+NL+    ++N L G
Sbjct: 101 RILNLEKNSFSYLIPQELGRLFRIQELSLGNNTFSGEIPVNISRCTNLLSIGLASNNLTG 160

Query: 121 EIPVKISNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNL 180
           ++P +  +L  LQ+LN   NHL G++P S GNLS LQ I    N L G IP +I  ++ L
Sbjct: 161 KLPAEFGSLSKLQVLNFQRNHLFGEIPPSYGNLSELQIIRGVRNNLQGGIPDSIGQLKRL 220

Query: 181 ISFNVAYNQFSGMIPP-IYNISSLQYIFIHTNRFHGSVPLDNGVNLPNLRYFSISGNNLT 239
             F    N  SG IP  IYN+SSL       N+ +G +P + G+ LPNL  F+I  N   
Sbjct: 221 ADFTFGVNSLSGTIPSSIYNMSSLVRFSAPLNQLYGILPPELGLTLPNLDTFNILSNQFR 280

Query: 240 GSLQDSLSNATNLQGLEINRNLFSGKVSINFSRLQNLSRLNLGENNLGTGTTNDLDFITL 299
           G +  +LSNA+ +  L++  N F+GKV  + + L NL RL L  NNLG    +DL F+  
Sbjct: 281 GLIPSTLSNASKISDLQLRNNSFTGKVP-SLAGLHNLQRLVLNFNNLGNNEDDDLGFLYP 339

Query: 300 LTNCTKLEVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQISDTIPDVIANLVNLNALG 359
           L N T LE+L ++ N FGGVLP  + N ST +  + IG N +  +IP  I  L+ L+ LG
Sbjct: 340 LANTTSLEILAINHNNFGGVLPEIVCNFSTKLRIMIIGENNLRGSIPTEIGKLIGLDTLG 399

Query: 360 VESNQLAGTIPLAIGELKSIQILFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPP 419
           +E NQL G IP +IG+L+ + +  +N N + G IPSSLGN+T L ++    NNLQG+IP 
Sbjct: 400 LELNQLTGIIPSSIGKLQRLGVFNINGNKISGNIPSSLGNITSLLEVYFFANNLQGRIPS 459

Query: 420 SNGNCQNLILLTTRKNKLSGIVPRQLLRIITLSVLLDLSDNLLSGHFPTKVGNLKNLVSL 479
           S GNCQNL++L   +N LSG +P+++L I +LS+ LDL++N L G  P++VG L +L  L
Sbjct: 460 SLGNCQNLLMLRLDQNNLSGSIPKEVLGISSLSMYLDLAENQLIGPLPSEVGKLVHLGGL 519

Query: 480 DISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTISIPSTLSSLKSITELDLSRNNLSGHIP 539
           ++  N  SGEIP  L  C SLE+L +  N F  SIP +LSSL+++  L+LS NNLSG IP
Sbjct: 520 NVYKNRLSGEIPGILSSCVSLEHLNLGPNFFQGSIPESLSSLRALQILNLSHNNLSGKIP 579

Query: 540 QYLENLSFLLFLNMSYNHFEGKVPIE 565
           ++L     L  L++S+N+ EG+VP++
Sbjct: 580 KFLAEFKLLTSLDLSFNNLEGEVPVQ 605

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255585471|ref|XP_002533428.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis] gi|223526716|gb|EEF28948.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis]

 Score =  462 bits (1190), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 266/562 (47%), Positives = 371/562 (66%), Gaps = 9/562 (1%)

Query: 1   MKSQL-QDPLGVTSSWNNSINLCQWTGVTCGHRRQRVTGLDLRHQSVGGVLSPFVGNLNF 59
            KS++  DP  V  SWN +I+ CQW GVTCG   +RVT LDL    + G +SP++GNL+F
Sbjct: 47  FKSKITHDPFQVLRSWNETIHFCQWQGVTCGLLHRRVTVLDLHSLKISGSISPYIGNLSF 106

Query: 60  LRSINLPNNSFRGKIPHEVGNLFRLQNLTLTNNYFLGKILTDLSHCSNLMKFEASNNKLE 119
           LR++N+ NNSF  +IP ++G L RL+ L L NN   GKI T++S CSNL+      NKLE
Sbjct: 107 LRALNIQNNSFGHEIPQQIGYLRRLEELRLNNNSVGGKIPTNISRCSNLVFISLGKNKLE 166

Query: 120 GEIPVKISNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRN 179
           G +P ++  L  LQ+L+I  N L G +P S+GNLS LQ + +  NR+ G +P+++  +RN
Sbjct: 167 GNVPEELGVLSNLQVLSIFGNKLTGSIPHSLGNLSQLQRLSLAENRMVGEVPNSLGWLRN 226

Query: 180 LISFNVAYNQFSGMIPP-IYNISSLQYIFIHTNRFHGSVPLDNGVNLPNLRYFSISGNNL 238
           L   ++  N+ SG IP  ++N+SS++ + I  N FHG++P D G  LPN+R+F+IS N  
Sbjct: 227 LTFLSLRSNRLSGTIPSSLFNLSSIRNLDIGENNFHGNLPSDIGFLLPNIRWFAISSNEF 286

Query: 239 TGSLQDSLSNATNLQGLEINRNLFSGKVSINFSRLQNLSRLNLGENNLGTGTTNDLDFIT 298
           TG +  SLSNATNL+ L + +N  +G+V  + ++L  L   +L  NNLGTG  +DL F+ 
Sbjct: 287 TGKIPVSLSNATNLESLLLLQNNLTGEVP-SLAKLDRLRVFSLTSNNLGTGKADDLSFLH 345

Query: 299 LLTNCTKLEVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQISDTIPDVIANLVNLNAL 358
            LTN T LE L ++ N FGG+LP S+ANLSTT+  + + +N+I  +IP  I NLV+L   
Sbjct: 346 SLTNTTALEELGVNGNNFGGMLPDSIANLSTTLRILLLDNNRIIGSIPSGIENLVSLEDF 405

Query: 359 GVESNQLAGTIPLAIGELKSIQILFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIP 418
            V +NQL+G IP +IG+L+++ +L LN N L G IPSSLGNLT L QL++E NNL G+IP
Sbjct: 406 EVWNNQLSGFIPDSIGKLQNLVVLALNSNMLSGHIPSSLGNLTNLIQLLVEDNNLSGRIP 465

Query: 419 PSNGNCQNLILLTTRKNKLSGIVPRQLLRIITLSVLLDLSDNLLSGHFPTKVGNLKNLVS 478
              G CQN++ L+  +N  SG +P +++ I +LS+ LDLS N L+G  P +VGNLK+L  
Sbjct: 466 SDLGRCQNMLGLSLSQNNFSGSIPPEVISISSLSIYLDLSQNNLTGTLPMEVGNLKSLSE 525

Query: 479 LDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTISIPSTLSSLKSITELDLSRNNLSGHI 538
            D+S N  SGEIP TLG C SLE L M  N+F   IPS+LSSL+++  LDLS N+LSG +
Sbjct: 526 FDVSGNKLSGEIPRTLGSCISLEILNMAGNNFQGLIPSSLSSLRALQILDLSNNHLSGMV 585

Query: 539 PQYLENLSFLLFLNMSYNHFEG 560
           P      S  +F N S    EG
Sbjct: 586 P------SKGIFKNASATSVEG 601

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	566
TAIR|locus:2075661	1025	AT3G47110 [Arabidopsis thalian	0.992	0.548	0.439	2e-120
TAIR|locus:2149922	1031	EFR "EF-TU receptor" [Arabidop	0.989	0.543	0.423	5.4e-118
TAIR|locus:2079157	1011	AT3G47580 [Arabidopsis thalian	0.989	0.553	0.393	5.3e-111
TAIR|locus:2079142	1010	AT3G47570 [Arabidopsis thalian	0.991	0.555	0.404	1.4e-110
TAIR|locus:2075631	1009	AT3G47090 [Arabidopsis thalian	0.994	0.557	0.395	7.2e-107
UNIPROTKB|Q40640	1025	Xa21 "Receptor kinase-like pro	0.973	0.537	0.398	3.8e-101
UNIPROTKB|O24435	813	O24435 "Receptor kinase-like p	0.885	0.616	0.366	1.2e-83
TAIR|locus:2170483	1173	FLS2 "FLAGELLIN-SENSITIVE 2" [	0.964	0.465	0.337	2e-78
TAIR|locus:2097310	1002	BAM2 "BARELY ANY MERISTEM 2" [	0.957	0.540	0.320	8.6e-72
TAIR|locus:2169965	1003	BAM1 "BARELY ANY MERISTEM 1" [	0.955	0.539	0.324	3.7e-71

TAIR|locus:2075661 AT3G47110 [Arabidopsis thaliana (taxid:3702)]

 Score = 1185 (422.2 bits), Expect = 2.0e-120, P = 2.0e-120
 Identities = 249/566 (43%), Positives = 358/566 (63%)

Query:     2 KSQLQDPLGVT-SSWNNSINLCQWTGVTCGHRRQRVTGLDLRHQSVGGVLSPFVGNLNFL 60
             KSQ+ +   V   SWN+S+ LC WTGV CG + +RVTG+DL    + GV+SPFVGNL+FL
Sbjct:    48 KSQVSETSRVVLGSWNDSLPLCSWTGVKCGLKHRRVTGVDLGGLKLTGVVSPFVGNLSFL 107

Query:    61 RSINLPNNSFRGKIPHEVGNLFRLQNLTLTNNYFLGKILTDLSHCSNLMKFEASNNKLEG 120
             RS+NL +N F G IP EVGNLFRLQ L ++NN F G I   LS+CS+L   + S+N LE 
Sbjct:   108 RSLNLADNFFHGAIPSEVGNLFRLQYLNMSNNLFGGVIPVVLSNCSSLSTLDLSSNHLEQ 167

Query:   121 EIPVKISNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNL 180
              +P++  +L  L +L++  N+L G+ PAS+GNL++LQ +D   N++ G IP  I+ ++ +
Sbjct:   168 GVPLEFGSLSKLVLLSLGRNNLTGKFPASLGNLTSLQMLDFIYNQIEGEIPGDIARLKQM 227

Query:   181 ISFNVAYNQFSGMIPP-IYNISSLQYIFIHTNRFHGSVPLDNGVNLPNLRYFSISGNNLT 239
             I F +A N+F+G+ PP IYN+SSL ++ I  N F G++  D G  LPNL+   +  N+ T
Sbjct:   228 IFFRIALNKFNGVFPPPIYNLSSLIFLSITGNSFSGTLRPDFGSLLPNLQILYMGINSFT 287

Query:   240 GSLQDSLSNATNLQGLEINRNLFSGKVSINFSRLQNLSRLNLGENNLGTGTTNDLDFITL 299
             G++ ++LSN ++L+ L+I  N  +GK+ ++F RLQNL  L L  N+LG  ++ DLDF+  
Sbjct:   288 GTIPETLSNISSLRQLDIPSNHLTGKIPLSFGRLQNLLLLGLNNNSLGNYSSGDLDFLGA 347

Query:   300 LTNCTKLEVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQISDTIPDVIANLVNLNALG 359
             LTNC++L+ L++  N+ GG LP  +ANLST +TE+++G N IS +IP  I NLV+L  L 
Sbjct:   348 LTNCSQLQYLNVGFNKLGGQLPVFIANLSTQLTELSLGGNLISGSIPHGIGNLVSLQTLD 407

Query:   360 VESNQLAGTIPLAIGELKSIQILFLNENFLRGTIPSSXXXXXXXXXXXXEVNNLQGKIPP 419
             +  N L G +P ++GEL  ++ + L  N L G IPSS              N+ +G IP 
Sbjct:   408 LGENLLTGKLPPSLGELSELRKVLLYSNGLSGEIPSSLGNISGLTYLYLLNNSFEGSIPS 467

Query:   420 SNGNCQNLILLTTRKNKLSGIVPRQLLRIITXXXXXXXXXXXXXGHFPTKVGNLKNLVSL 479
             S G+C  L+ L    NKL+G +P +L+ +               G     +G LK L++L
Sbjct:   468 SLGSCSYLLDLNLGTNKLNGSIPHELMEL-PSLVVLNVSFNLLVGPLRQDIGKLKFLLAL 526

Query:   480 DISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTISIPSTLSSLKSITELDLSRNNLSGHIP 539
             D+S N  SG+IP TL  C SLE+L +Q NSF   IP  +  L  +  LDLS+NNLSG IP
Sbjct:   527 DVSYNKLSGQIPQTLANCLSLEFLLLQGNSFVGPIPD-IRGLTGLRFLDLSKNNLSGTIP 585

Query:   540 QYLENLSFLLFLNMSYNHFEGKVPIE 565
             +Y+ N S L  LN+S N+F+G VP E
Sbjct:   586 EYMANFSKLQNLNLSLNNFDGAVPTE 611

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2149922 EFR "EF-TU receptor" [Arabidopsis thaliana (taxid:3702)]

 Score = 1162 (414.1 bits), Expect = 5.4e-118, P = 5.4e-118
 Identities = 239/565 (42%), Positives = 354/565 (62%)

Query:     2 KSQLQD--PLGVTSSWNNSINLCQWTGVTCGHRRQRVTGLDLRHQSVGGVLSPFVGNLNF 59
             KSQ+ +     V +SWN+S   C W GVTCG RR+RV  L+L    + GV+SP +GNL+F
Sbjct:    39 KSQVSENNKREVLASWNHSSPFCNWIGVTCGRRRERVISLNLGGFKLTGVISPSIGNLSF 98

Query:    60 LRSINLPNNSFRGKIPHEVGNLFRLQNLTLTNNYFLGKILTDLSHCSNLMKFEASNNKLE 119
             LR +NL +NSF   IP +VG LFRLQ L ++ N   G+I + LS+CS L   + S+N L 
Sbjct:    99 LRLLNLADNSFGSTIPQKVGRLFRLQYLNMSYNLLEGRIPSSLSNCSRLSTVDLSSNHLG 158

Query:   120 GEIPVKISNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRN 179
               +P ++ +L  L IL++++N+L G  PAS+GNL++LQ++D   N++ G IP  ++ +  
Sbjct:   159 HGVPSELGSLSKLAILDLSKNNLTGNFPASLGNLTSLQKLDFAYNQMRGEIPDEVARLTQ 218

Query:   180 LISFNVAYNQFSGMIPP-IYNISSLQYIFIHTNRFHGSVPLDNGVNLPNLRYFSISGNNL 238
             ++ F +A N FSG  PP +YNISSL+ + +  N F G++  D G  LPNLR   +  N  
Sbjct:   219 MVFFQIALNSFSGGFPPALYNISSLESLSLADNSFSGNLRADFGYLLPNLRRLLLGTNQF 278

Query:   239 TGSLQDSLSNATNLQGLEINRNLFSGKVSINFSRLQNLSRLNLGENNLGTGTTNDLDFIT 298
             TG++  +L+N ++L+  +I+ N  SG + ++F +L+NL  L +  N+LG  +++ L+FI 
Sbjct:   279 TGAIPKTLANISSLERFDISSNYLSGSIPLSFGKLRNLWWLGIRNNSLGNNSSSGLEFIG 338

Query:   299 LLTNCTKLEVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQISDTIPDVIANLVNLNAL 358
              + NCT+LE LD+  NR GG LP S+ANLSTT+T + +G N IS TIP  I NLV+L  L
Sbjct:   339 AVANCTQLEYLDVGYNRLGGELPASIANLSTTLTSLFLGQNLISGTIPHDIGNLVSLQEL 398

Query:   359 GVESNQLAGTIPLAIGELKSIQILFLNENFLRGTIPSSXXXXXXXXXXXXEVNNLQGKIP 418
              +E+N L+G +P++ G+L ++Q++ L  N + G IPS               N+  G+IP
Sbjct:   399 SLETNMLSGELPVSFGKLLNLQVVDLYSNAISGEIPSYFGNMTRLQKLHLNSNSFHGRIP 458

Query:   419 PSNGNCQNLILLTTRKNKLSGIVPRQLLRIITXXXXXXXXXXXXXGHFPTKVGNLKNLVS 478
              S G C+ L+ L    N+L+G +P+++L+I               GHFP +VG L+ LV 
Sbjct:   459 QSLGRCRYLLDLWMDTNRLNGTIPQEILQI-PSLAYIDLSNNFLTGHFPEEVGKLELLVG 517

Query:   479 LDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTISIPSTLSSLKSITELDLSRNNLSGHI 538
             L  S N  SG++P  +GGC S+E+L MQ NSF  +IP  +S L S+  +D S NNLSG I
Sbjct:   518 LGASYNKLSGKMPQAIGGCLSMEFLFMQGNSFDGAIPD-ISRLVSLKNVDFSNNNLSGRI 576

Query:   539 PQYLENLSFLLFLNMSYNHFEGKVP 563
             P+YL +L  L  LN+S N FEG+VP
Sbjct:   577 PRYLASLPSLRNLNLSMNKFEGRVP 601

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0010204 "defense response signaling pathway, resistance gene-independent" evidence=IMP

GO:0016045 "detection of bacterium" evidence=RCA;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0002764 "immune response-regulating signaling pathway" evidence=IMP

GO:0009626 "plant-type hypersensitive response" evidence=IMP

GO:0019199 "transmembrane receptor protein kinase activity" evidence=TAS

GO:0010359 "regulation of anion channel activity" evidence=IMP

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009581 "detection of external stimulus" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031347 "regulation of defense response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0043900 "regulation of multi-organism process" evidence=RCA

GO:0050776 "regulation of immune response" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

TAIR|locus:2079157 AT3G47580 [Arabidopsis thaliana (taxid:3702)]

 Score = 1096 (390.9 bits), Expect = 5.3e-111, P = 5.3e-111
 Identities = 222/564 (39%), Positives = 343/564 (60%)

Query:     2 KSQLQD-PLGVTSSWNNSINLCQWTGVTCGHRRQRVTGLDLRHQSVGGVLSPFVGNLNFL 60
             KSQ+ +    V SSWNNS  LC W  VTCG + +RVT L+L    +GG++SP +GN++FL
Sbjct:    33 KSQVSEGKRDVLSSWNNSFPLCNWKWVTCGRKHKRVTHLNLGGLQLGGIVSPSIGNVSFL 92

Query:    61 RSINLPNNSFRGKIPHEVGNLFRLQNLTLTNNYFLGKILTDLSHCSNLMKFEASNNKLEG 120
              S++L +N+F G IP EVGNLFRL++L +  N   G I   LS+CS L+  +  +N L  
Sbjct:    93 ISLDLSDNAFGGIIPREVGNLFRLEHLYMAFNSLEGGIPATLSNCSRLLNLDLYSNPLRQ 152

Query:   121 EIPVKISNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNL 180
              +P ++ +L  L IL++  N+LKG+LP S+GNL++L+ +    N + G +P  ++ +  +
Sbjct:   153 GVPSELGSLTKLVILDLGRNNLKGKLPRSLGNLTSLKSLGFTDNNIEGEVPDELARLSQM 212

Query:   181 ISFNVAYNQFSGMIPP-IYNISSLQYIFIHTNRFHGSVPLDNGVNLPNLRYFSISGNNLT 239
             +   ++ N+F G+ PP IYN+S+L+ +F+  + F GS+  D G  LPN+R  ++  N+L 
Sbjct:   213 VGLGLSMNKFFGVFPPAIYNLSALEDLFLFGSGFSGSLKPDFGNLLPNIRELNLGENDLV 272

Query:   240 GSLQDSLSNATNLQGLEINRNLFSGKVSINFSRLQNLSRLNLGENNLGTGTTNDLDFITL 299
             G++  +LSN + LQ   IN+N+ +G +  NF ++ +L  L+L EN LG+ T  DL+FI  
Sbjct:   273 GAIPTTLSNISTLQKFGINKNMMTGGIYPNFGKVPSLQYLDLSENPLGSYTFGDLEFIDS 332

Query:   300 LTNCTKLEVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQISDTIPDVIANLVNLNALG 359
             LTNCT L++L +   R GG LP S+AN+ST +  + +  N    +IP  I NL+ L  L 
Sbjct:   333 LTNCTHLQLLSVGYTRLGGALPTSIANMSTELISLNLIGNHFFGSIPQDIGNLIGLQRLQ 392

Query:   360 VESNQLAGTIPLAIGELKSIQILFLNENFLRGTIPSSXXXXXXXXXXXXEVNNLQGKIPP 419
             +  N L G +P ++G+L  + +L L  N + G IPS               N+ +G +PP
Sbjct:   393 LGKNMLTGPLPTSLGKLLRLGLLSLYSNRMSGEIPSFIGNLTQLEILYLSNNSFEGIVPP 452

Query:   420 SNGNCQNLILLTTRKNKLSGIVPRQLLRIITXXXXXXXXXXXXXGHFPTKVGNLKNLVSL 479
             S G C +++ L    NKL+G +P+++++I T             G  P  +G+L+NLV L
Sbjct:   453 SLGKCSHMLDLRIGYNKLNGTIPKEIMQIPTLVNLSMEGNSLS-GSLPNDIGSLQNLVKL 511

Query:   480 DISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTISIPSTLSSLKSITELDLSRNNLSGHIP 539
              + +N FSG +P TLG C ++E L +Q NSF  +IP+ +  L  +  +DLS N+LSG IP
Sbjct:   512 SLENNKFSGHLPQTLGNCLAMEQLFLQGNSFDGAIPN-IRGLMGVRRVDLSNNDLSGSIP 570

Query:   540 QYLENLSFLLFLNMSYNHFEGKVP 563
             +Y  N S L +LN+S N+F GKVP
Sbjct:   571 EYFANFSKLEYLNLSINNFTGKVP 594

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2079142 AT3G47570 [Arabidopsis thaliana (taxid:3702)]

 Score = 1092 (389.5 bits), Expect = 1.4e-110, P = 1.4e-110
 Identities = 229/566 (40%), Positives = 340/566 (60%)

Query:     2 KSQL-QDPLGVTSSWNNSINLCQWTGVTCGHRRQRVTGLDLRHQSVGGVLSPFVGNLNFL 60
             KSQ+ +D   V SSWN+S  LC W GVTCG + +RVT L+L    +GGV+SP +GNL+FL
Sbjct:    33 KSQVSEDKRVVLSSWNHSFPLCNWKGVTCGRKNKRVTHLELGRLQLGGVISPSIGNLSFL 92

Query:    61 RSINLPNNSFRGKIPHEVGNLFRLQNLTLTNNYFLGKILTDLSHCSNLMKFEASNNKLEG 120
              S++L  N F G IP EVG L RL+ L +  NY  G I   L +CS L+     +N+L G
Sbjct:    93 VSLDLYENFFGGTIPQEVGQLSRLEYLDMGINYLRGPIPLGLYNCSRLLNLRLDSNRLGG 152

Query:   121 EIPVKISNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNL 180
              +P ++ +L  L  LN+  N+++G+LP S+GNL+ L+++ +  N L G IPS ++ +  +
Sbjct:   153 SVPSELGSLTNLVQLNLYGNNMRGKLPTSLGNLTLLEQLALSHNNLEGEIPSDVAQLTQI 212

Query:   181 ISFNVAYNQFSGMIPP-IYNISSLQYIFIHTNRFHGSVPLDNGVNLPNLRYFSISGNNLT 239
              S  +  N FSG+ PP +YN+SSL+ + I  N F G +  D G+ LPNL  F++ GN  T
Sbjct:   213 WSLQLVANNFSGVFPPALYNLSSLKLLGIGYNHFSGRLRPDLGILLPNLLSFNMGGNYFT 272

Query:   240 GSLQDSLSNATNLQGLEINRNLFSGKVSINFSRLQNLSRLNLGENNLGTGTTNDLDFITL 299
             GS+  +LSN + L+ L +N N  +G +   F  + NL  L L  N+LG+ ++ DL+F+T 
Sbjct:   273 GSIPTTLSNISTLERLGMNENNLTGSIP-TFGNVPNLKLLFLHTNSLGSDSSRDLEFLTS 331

Query:   300 LTNCTKLEVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQISDTIPDVIANLVNLNALG 359
             LTNCT+LE L +  NR GG LP S+ANLS  +  + +G   IS +IP  I NL+NL  L 
Sbjct:   332 LTNCTQLETLGIGRNRLGGDLPISIANLSAKLVTLDLGGTLISGSIPYDIGNLINLQKLI 391

Query:   360 VESNQLAGTIPLAIGELKSIQILFLNENFLRGTIPSSXXXXXXXXXXXXEVNNLQGKIPP 419
             ++ N L+G +P ++G+L +++ L L  N L G IP+               N  +G +P 
Sbjct:   392 LDQNMLSGPLPTSLGKLLNLRYLSLFSNRLSGGIPAFIGNMTMLETLDLSNNGFEGIVPT 451

Query:   420 SNGNCQNLILLTTRKNKLSGIVPRQLLRIITXXXXXXXXXXXXXGHFPTKVGNLKNLVSL 479
             S GNC +L+ L    NKL+G +P ++++I               G  P  +G L+NL +L
Sbjct:   452 SLGNCSHLLELWIGDNKLNGTIPLEIMKI-QQLLRLDMSGNSLIGSLPQDIGALQNLGTL 510

Query:   480 DISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTISIPSTLSSLKSITELDLSRNNLSGHIP 539
              +  N  SG++P TLG C ++E L ++ N F   IP  L  L  + E+DLS N+LSG IP
Sbjct:   511 SLGDNKLSGKLPQTLGNCLTMESLFLEGNLFYGDIPD-LKGLVGVKEVDLSNNDLSGSIP 569

Query:   540 QYLENLSFLLFLNMSYNHFEGKVPIE 565
             +Y  + S L +LN+S+N+ EGKVP++
Sbjct:   570 EYFASFSKLEYLNLSFNNLEGKVPVK 595

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2075631 AT3G47090 [Arabidopsis thaliana (taxid:3702)]

 Score = 1057 (377.1 bits), Expect = 7.2e-107, P = 7.2e-107
 Identities = 224/567 (39%), Positives = 332/567 (58%)

Query:     1 MKSQLQDPL-GVTSSWNNSINLCQWTGVTCGHRRQRVTGLDLRHQSVGGVLSPFVGNLNF 59
             +KSQ+ +      S+WNNS  LC W  V CG + +RVT LDL    +GGV+SP +GNL+F
Sbjct:    32 IKSQVSESKRDALSAWNNSFPLCSWKWVRCGRKHKRVTRLDLGGLQLGGVISPSIGNLSF 91

Query:    60 LRSINLPNNSFRGKIPHEVGNLFRLQNLTLTNNYFLGKILTDLSHCSNLMKFEASNNKLE 119
             L  ++L NNSF G IP E+GNLFRL+ L +  NY  G+I   LS+CS L+  +  +N L 
Sbjct:    92 LIYLDLSNNSFGGTIPQEMGNLFRLKYLAVGFNYLEGEIPASLSNCSRLLYLDLFSNNLG 151

Query:   120 GEIPVKISNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRN 179
               +P ++ +L  L  L +  N LKG+ P  I NL++L  +++  N L G IP  I+ +  
Sbjct:   152 DGVPSELGSLRKLLYLYLGLNDLKGKFPVFIRNLTSLIVLNLGYNHLEGEIPDDIAMLSQ 211

Query:   180 LISFNVAYNQFSGMIPP-IYNISSLQYIFIHTNRFHGSVPLDNGVNLPNLRYFSISGNNL 238
             ++S  +  N FSG+ PP  YN+SSL+ +++  N F G++  D G  LPN+   S+ GN L
Sbjct:   212 MVSLTLTMNNFSGVFPPAFYNLSSLENLYLLGNGFSGNLKPDFGNLLPNIHELSLHGNFL 271

Query:   239 TGSLQDSLSNATNLQGLEINRNLFSGKVSINFSRLQNLSRLNLGENNLGTGTTNDLDFIT 298
             TG++  +L+N + L+   I +N  +G +S NF +L+NL  L L  N+LG+ +  DL F+ 
Sbjct:   272 TGAIPTTLANISTLEMFGIGKNRMTGSISPNFGKLENLHYLELANNSLGSYSFGDLAFLD 331

Query:   299 LLTNCTKLEVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQISDTIPDVIANLVNLNAL 358
              LTNC+ L  L +  NR GG LP S+ N+ST +T + +  N I  +IP  I NL+ L +L
Sbjct:   332 ALTNCSHLHGLSVSYNRLGGALPTSIVNMSTELTVLNLKGNLIYGSIPHDIGNLIGLQSL 391

Query:   359 GVESNQLAGTIPLAIGELKSIQILFLNENFLRGTIPSSXXXXXXXXXXXXEVNNLQGKIP 418
              +  N L G +P ++G L  +  L L  N   G IPS               N+ +G +P
Sbjct:   392 LLADNLLTGPLPTSLGNLVGLGELILFSNRFSGEIPSFIGNLTQLVKLYLSNNSFEGIVP 451

Query:   419 PSNGNCQNLILLTTRKNKLSGIVPRQLLRIITXXXXXXXXXXXXXGHFPTKVGNLKNLVS 478
             PS G+C +++ L    NKL+G +P+++++I T             G  P  +G L+NLV 
Sbjct:   452 PSLGDCSHMLDLQIGYNKLNGTIPKEIMQIPTLVHLNMESNSLS-GSLPNDIGRLQNLVE 510

Query:   479 LDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTISIPSTLSSLKSITELDLSRNNLSGHI 538
             L + +N  SG +P TLG C S+E + +Q+N F  +IP  +  L  +  +DLS NNLSG I
Sbjct:   511 LLLGNNNLSGHLPQTLGKCLSMEVIYLQENHFDGTIPD-IKGLMGVKNVDLSNNNLSGSI 569

Query:   539 PQYLENLSFLLFLNMSYNHFEGKVPIE 565
              +Y EN S L +LN+S N+FEG+VP E
Sbjct:   570 SEYFENFSKLEYLNLSDNNFEGRVPTE 596

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0009507 "chloroplast" evidence=IDA

UNIPROTKB|Q40640 Xa21 "Receptor kinase-like protein" [Oryza sativa (taxid:4530)]

 Score = 1003 (358.1 bits), Expect = 3.8e-101, P = 3.8e-101
 Identities = 223/559 (39%), Positives = 326/559 (58%)

Query:    13 SSWNNSIN--LCQWTGVTCGHRRQR----VTGLDLRHQSVGGVLSPFVGNLNFLRSINLP 66
             +SWN S +   C W GV CG RR+R    V  L LR  ++ G++SP +GNL+FLR ++L 
Sbjct:    52 ASWNTSGHGQHCTWVGVVCGRRRRRHPHRVVKLLLRSSNLSGIISPSLGNLSFLRELDLG 111

Query:    67 NNSFRGKIPHEVGNLFRLQNLTLTNNYFLGKILTDLSHCSNLMKFEASNNKLEGEIPVKI 126
             +N   G+IP E+  L RLQ L L++N   G I   +  C+ L   + S+N+L G IP +I
Sbjct:   112 DNYLSGEIPPELSRLSRLQLLELSDNSIQGSIPAAIGACTKLTSLDLSHNQLRGMIPREI 171

Query:   127 -SNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNV 185
              ++L  L  L + +N L G++P+++GNL++LQE D+  NRL G IPS++  + +L++ N+
Sbjct:   172 GASLKHLSNLYLYKNGLSGEIPSALGNLTSLQEFDLSFNRLSGAIPSSLGQLSSLLTMNL 231

Query:   186 AYNQFSGMIP-PIYNISSLQYIFIHTNRFHGSVPLDNGVNLPNLRYFSISGNNLTGSLQD 244
               N  SGMIP  I+N+SSL+   +  N+  G +P +    L  L    +  N   G +  
Sbjct:   232 GQNNLSGMIPNSIWNLSSLRAFSVRENKLGGMIPTNAFKTLHLLEVIDMGTNRFHGKIPA 291

Query:   245 SLSNATNLQGLEINRNLFSGKVSINFSRLQNLSRLNLGENNLGTGTTNDLDFITLLTNCT 304
             S++NA++L  ++I  NLFSG ++  F RL+NL+ L L  N   T   +D  FI+ LTNC+
Sbjct:   292 SVANASHLTVIQIYGNLFSGIITSGFGRLRNLTELYLWRNLFQTREQDDWGFISDLTNCS 351

Query:   305 KLEVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQISDTIPDVIANLVNLNALGVESNQ 364
             KL+ L+L  N  GGVLP S +NLST+++ +A+  N+I+ +IP  I NL+ L  L + +N 
Sbjct:   352 KLQTLNLGENNLGGVLPNSFSNLSTSLSFLALELNKITGSIPKDIGNLIGLQHLYLCNNN 411

Query:   365 LAGTIPLAIGELKSIQILFLNENFLRGTIPSSXXXXXXXXXXXXEVNNLQGKIPPSNGNC 424
               G++P ++G LK++ IL   EN L G+IP +              N   G IP +  N 
Sbjct:   412 FRGSLPSSLGRLKNLGILLAYENNLSGSIPLAIGNLTELNILLLGTNKFSGWIPYTLSNL 471

Query:   425 QNLILLTTRKNKLSGIVPRQLLRIITXXXXXXXXXXXXXGHFPTKVGNLKNLVSLDISSN 484
              NL+ L    N LSG +P +L  I T             G  P ++G+LKNLV     SN
Sbjct:   472 TNLLSLGLSTNNLSGPIPSELFNIQTLSIMINVSKNNLEGSIPQEIGHLKNLVEFHAESN 531

Query:   485 MFSGEIPTTLGGCTSLEYLGMQDNSFTISIPSTLSSLKSITELDLSRNNLSGHIPQYLEN 544
               SG+IP TLG C  L YL +Q+N  + SIPS L  LK +  LDLS NNLSG IP  L +
Sbjct:   532 RLSGKIPNTLGDCQLLRYLYLQNNLLSGSIPSALGQLKGLETLDLSSNNLSGQIPTSLAD 591

Query:   545 LSFLLFLNMSYNHFEGKVP 563
             ++ L  LN+S+N F G+VP
Sbjct:   592 ITMLHSLNLSFNSFVGEVP 610

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|O24435 O24435 "Receptor kinase-like protein" [Oryza sativa (taxid:4530)]

 Score = 838 (300.0 bits), Expect = 1.2e-83, P = 1.2e-83
 Identities = 184/502 (36%), Positives = 279/502 (55%)

Query:    63 INLPNNSFRGKIPHEVGNLFRLQNLTLTNNYFLGKILTDLSHCSNLMKFEASNNKLEGEI 122
             + L +++  G I   +GNL  L+ L L++N+  GKI  +LS  S L +   + N L GEI
Sbjct:    83 LRLRSSNLAGIISPSLGNLSFLRTLQLSDNHLSGKIPQELSRLSRLQQLVLNFNSLSGEI 142

Query:   123 PVKISNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLIS 182
             P  + NL  L +L +  N L G +P+S+G L+ L ++ +  N L G IPS+   +R L  
Sbjct:   143 PAALGNLTSLSVLELTNNTLSGAIPSSLGKLTGLTDLALAENTLSGSIPSSFGQLRRLSF 202

Query:   183 FNVAYNQFSGMIP-PIYNISSLQYIFIHTNRFHGSVPLDNGVNLPNLRYFSISGNNLTGS 241
              ++A+N  SG IP PI+NISSL    + +N+  G++P +   NLP+L+   +  N   G 
Sbjct:   203 LSLAFNNLSGAIPDPIWNISSLTIFEVISNKLSGTLPTNAFSNLPSLQEVYMYYNQFHGR 262

Query:   242 LQDSLSNATNLQGLEINRNLFSGKVSINFSRLQNLSRLNLGENNLGTGTTNDLDFITLLT 301
             +  S+ NA+N+    I  N FSG V     R++NL RL L E       TND  F+T LT
Sbjct:   263 IPASIGNASNISIFTIGLNSFSGVVPPEIGRMRNLQRLELPETLSEAEETNDWKFMTALT 322

Query:   302 NCTKLEVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQISDTIPDVIANLVNLNALGVE 361
             NC+ L+ ++L   +FGGVLP S++NLS+++  ++I  N+IS ++P  I NLVNL  L + 
Sbjct:   323 NCSNLQEVELGGCKFGGVLPDSVSNLSSSLVSLSIRDNKISGSLPRDIGNLVNLQYLSLA 382

Query:   362 SNQLAGTIPLAIGELKSIQILFLNENFLRGTIPSSXXXXXXXXXXXXEVNNLQGKIPPSN 421
             +N L G++P +  +LK+++ L ++ N L G++P +            + N   G IP + 
Sbjct:   383 NNSLTGSLPSSFSKLKNLRRLTVDNNKLIGSLPLTIGNLTQLTNMEVQFNAFGGTIPSTL 442

Query:   422 GNCQNLILLTTRKNKLSGIVPRQLLRIITXXXXXXXXXXXXXGHFPTKVGNLKNLVSLDI 481
             GN   L  +    N   G +P ++  I               G  P ++G LKN+V    
Sbjct:   443 GNLTKLFQINLGHNNFIGQIPIEIFSIPALSEILDVSHNNLEGSIPKEIGKLKNIVEFHA 502

Query:   482 SSNMFSGEIPTTLGGCTSLEYLGMQDNSFTISIPSTLSSLKSITELDLSRNNLSGHIPQY 541
              SN  SGE P+T+G C  L++L +Q+N    SIP  L+ LK +  LDLS NNLSG IP  
Sbjct:   503 DSNKLSGENPSTIGECQLLQHLFLQNNFLNGSIPIALTQLKGLDTLDLSGNNLSGQIPMS 562

Query:   542 LENLSFLLFLNMSYNHFEGKVP 563
             L ++  L  LN+S+N F G+VP
Sbjct:   563 LGDMPLLHSLNLSFNSFHGEVP 584

GO:0004672 "protein kinase activity" evidence=IDA

GO:0006468 "protein phosphorylation" evidence=IDA

GO:0016567 "protein ubiquitination" evidence=IDA

GO:0042742 "defense response to bacterium" evidence=IMP

TAIR|locus:2170483 FLS2 "FLAGELLIN-SENSITIVE 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 793 (284.2 bits), Expect = 2.0e-78, P = 2.0e-78
 Identities = 189/560 (33%), Positives = 276/560 (49%)

Query:     7 DPLGVTSSWN--NSINLCQWTGVTCGHRRQRVTGLDLRHQSVGGVLSPFVGNLNFLRSIN 64
             DPLGV S W    S+  C WTG+TC      V  + L  + + GVLSP + NL +L+ ++
Sbjct:    44 DPLGVLSDWTIIGSLRHCNWTGITCDSTGH-VVSVSLLEKQLEGVLSPAIANLTYLQVLD 102

Query:    65 LPNNSFRGKIPHEVGNLFRLQNLTLTNNYFLGKILTDLSHCSNLMKFEASNNKLEGEIPV 124
             L +NSF GKIP E+G L  L  L L  NYF G I + +    N+   +  NN L G++P 
Sbjct:   103 LTSNSFTGKIPAEIGKLTELNQLILYLNYFSGSIPSGIWELKNIFYLDLRNNLLSGDVPE 162

Query:   125 KISNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFN 184
             +I     L ++    N+L G++P  +G+L  LQ     GN L G IP +I  + NL   +
Sbjct:   163 EICKTSSLVLIGFDYNNLTGKIPECLGDLVHLQMFVAAGNHLTGSIPVSIGTLANLTDLD 222

Query:   185 VAYNQFSGMIPPIY-NISSLQYIFIHTNRFHGSVPLDNGVNLPNLRYFSISGNNLTGSLQ 243
             ++ NQ +G IP  + N+ +LQ + +  N   G +P + G N  +L    +  N LTG + 
Sbjct:   223 LSGNQLTGKIPRDFGNLLNLQSLVLTENLLEGDIPAEIG-NCSSLVQLELYDNQLTGKIP 281

Query:   244 DSLSNATNLQGLEINRNLFSGKVSINFSRLQNLSRLNLGENNLGTGTTNDLDFITLLTNC 303
               L N   LQ L I +N  +  +  +  RL  L+ L L EN+L    + ++ F+      
Sbjct:   282 AELGNLVQLQALRIYKNKLTSSIPSSLFRLTQLTHLGLSENHLVGPISEEIGFLE----- 336

Query:   304 TKLEVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQISDTIPDVIANLVNLNALGVESN 363
               LEVL LHSN F G  P S+ NL   +T + +G N IS  +P  +  L NL  L    N
Sbjct:   337 -SLEVLTLHSNNFTGEFPQSITNLRN-LTVLTVGFNNISGELPADLGLLTNLRNLSAHDN 394

Query:   364 QLAGTIPLAIGELKSIQILFLNENFLRGTIPSSXXXXXXXXXXXXEVNNLQGKIPPSNGN 423
              L G IP +I     +++L L+ N + G IP                N+  G+IP    N
Sbjct:   395 LLTGPIPSSISNCTGLKLLDLSHNQMTGEIPRGFGRMNLTFISIGR-NHFTGEIPDDIFN 453

Query:   424 CQNLILLTTRKNKLSGIVPRQLLRIITXXXXXXXXXXXXXGHFPTKVGNLKNLVSLDISS 483
             C NL  L+   N L+G + + L+  +              G  P ++GNLK+L  L + S
Sbjct:   454 CSNLETLSVADNNLTGTL-KPLIGKLQKLRILQVSYNSLTGPIPREIGNLKDLNILYLHS 512

Query:   484 NMFSGEIPTTLGGCTSLEYLGMQDNSFTISIPSTLSSLKSITELDLSRNNLSGHIPQYLE 543
             N F+G IP  +   T L+ L M  N     IP  +  +K ++ LDLS N  SG IP    
Sbjct:   513 NGFTGRIPREMSNLTLLQGLRMYSNDLEGPIPEEMFDMKLLSVLDLSNNKFSGQIPALFS 572

Query:   544 NLSFLLFLNMSYNHFEGKVP 563
              L  L +L++  N F G +P
Sbjct:   573 KLESLTYLSLQGNKFNGSIP 592

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0006468 "protein phosphorylation" evidence=ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0004675 "transmembrane receptor protein serine/threonine kinase activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS;IDA

GO:0016045 "detection of bacterium" evidence=IMP

GO:0005886 "plasma membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0042742 "defense response to bacterium" evidence=RCA;IMP

GO:0052544 "defense response by callose deposition in cell wall" evidence=IMP

GO:0010359 "regulation of anion channel activity" evidence=IMP

GO:0016310 "phosphorylation" evidence=RCA

GO:0005768 "endosome" evidence=IDA

GO:0006898 "receptor-mediated endocytosis" evidence=IDA

TAIR|locus:2097310 BAM2 "BARELY ANY MERISTEM 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 726 (260.6 bits), Expect = 8.6e-72, P = 8.6e-72
 Identities = 178/555 (32%), Positives = 289/555 (52%)

Query:    13 SSWNNSINLCQWTGVTCGHRRQRVTGLDLRHQSVGGVLSPFVGNLNFLRSINLPNNSFRG 72
             +SWN S   C WTGVTC    + VT LDL   ++ G LS  V +L  L++++L  N   G
Sbjct:    48 TSWNLSTTFCSWTGVTCDVSLRHVTSLDLSGLNLSGTLSSDVAHLPLLQNLSLAANQISG 107

Query:    73 KIPHEVGNLFRLQNLTLTNNYFLGKILTDLSH-CSNLMKFEASNNKLEGEIPVKISNLLM 131
              IP ++ NL+ L++L L+NN F G    +LS    NL   +  NN L G++PV ++NL  
Sbjct:   108 PIPPQISNLYELRHLNLSNNVFNGSFPDELSSGLVNLRVLDLYNNNLTGDLPVSLTNLTQ 167

Query:   132 LQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVAY-NQF 190
             L+ L++  N+  G++PA+ G    L+ + V GN L G+IP  I ++  L    + Y N F
Sbjct:   168 LRHLHLGGNYFSGKIPATYGTWPVLEYLAVSGNELTGKIPPEIGNLTTLRELYIGYYNAF 227

Query:   191 SGMIPP-IYNISSLQYIFIHTNRFHGSVPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNA 249
                +PP I N+S L           G +P + G  L  L    +  N  TG++   L   
Sbjct:   228 ENGLPPEIGNLSELVRFDAANCGLTGEIPPEIG-KLQKLDTLFLQVNAFTGTITQELGLI 286

Query:   250 TNLQGLEINRNLFSGKVSINFSRLQNLSRLNLGENNLGTGTTNDLDFITLLTNCTKLEVL 309
             ++L+ ++++ N+F+G++  +FS+L+NL+ LNL  N L  G   +  FI  +    +LEVL
Sbjct:   287 SSLKSMDLSNNMFTGEIPTSFSQLKNLTLLNLFRNKL-YGAIPE--FIGEMP---ELEVL 340

Query:   310 DLHSNRFGGVLPFSLANLSTTMTEIAIGSNQISDTIPDVIANLVNLNALGVESNQLAGTI 369
              L  N F G +P  L   +  +  + + SN+++ T+P  + +   L  L    N L G+I
Sbjct:   341 QLWENNFTGSIPQKLGE-NGRLVILDLSSNKLTGTLPPNMCSGNRLMTLITLGNFLFGSI 399

Query:   370 PLAIGELKSIQILFLNENFLRGTIPSSXXXXXXXXXXXXEVNNLQGKIPPSNGNCQ-NLI 428
             P ++G+ +S+  + + ENFL G+IP              + N L G++P S G    +L 
Sbjct:   400 PDSLGKCESLTRIRMGENFLNGSIPKELFGLPKLSQVELQDNYLTGELPISGGGVSGDLG 459

Query:   429 LLTTRKNKLSGIVPRQLLRIITXXXXXXXXXXXXXGHFPTKVGNLKNLVSLDISSNMFSG 488
              ++   N+LSG +P  +  + +             G  P ++G L+ L  LD S N+FSG
Sbjct:   460 QISLSNNQLSGSLPAAIGNL-SGVQKLLLDGNKFSGSIPPEIGRLQQLSKLDFSHNLFSG 518

Query:   489 EIPTTLGGCTSLEYLGMQDNSFTISIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFL 548
              I   +  C  L ++ +  N  +  IP+ L+ +K +  L+LSRN+L G IP  + ++  L
Sbjct:   519 RIAPEISRCKLLTFVDLSRNELSGDIPNELTGMKILNYLNLSRNHLVGSIPVTIASMQSL 578

Query:   549 LFLNMSYNHFEGKVP 563
               ++ SYN+  G VP
Sbjct:   579 TSVDFSYNNLSGLVP 593

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0010075 "regulation of meristem growth" evidence=IGI;RCA

GO:0048229 "gametophyte development" evidence=IGI

GO:0048437 "floral organ development" evidence=IGI

GO:0010480 "microsporocyte differentiation" evidence=IGI

GO:0048653 "anther development" evidence=IGI;RCA

GO:0009934 "regulation of meristem structural organization" evidence=IGI

GO:0005515 "protein binding" evidence=IPI

GO:0033612 "receptor serine/threonine kinase binding" evidence=IPI

GO:0000271 "polysaccharide biosynthetic process" evidence=RCA

GO:0007389 "pattern specification process" evidence=RCA

GO:0008361 "regulation of cell size" evidence=RCA

GO:0009664 "plant-type cell wall organization" evidence=RCA

GO:0009740 "gibberellic acid mediated signaling pathway" evidence=RCA

GO:0009825 "multidimensional cell growth" evidence=RCA

GO:0009832 "plant-type cell wall biogenesis" evidence=RCA

GO:0009926 "auxin polar transport" evidence=RCA

GO:0009932 "cell tip growth" evidence=RCA

GO:0010015 "root morphogenesis" evidence=RCA

GO:0010162 "seed dormancy process" evidence=RCA

GO:0010817 "regulation of hormone levels" evidence=RCA

GO:0040007 "growth" evidence=RCA

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

GO:0071555 "cell wall organization" evidence=RCA

TAIR|locus:2169965 BAM1 "BARELY ANY MERISTEM 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 720 (258.5 bits), Expect = 3.7e-71, P = 3.7e-71
 Identities = 180/555 (32%), Positives = 290/555 (52%)

Query:    13 SSWNNSINLCQWTGVTCGHRRQRVTGLDLRHQSVGGVLSPFVGNLNFLRSINLPNNSFRG 72
             SSW  S + C W GVTC   R+ VT LDL   ++ G LSP V +L  L++++L  N   G
Sbjct:    48 SSWKVSTSFCTWIGVTCDVSRRHVTSLDLSGLNLSGTLSPDVSHLRLLQNLSLAENLISG 107

Query:    73 KIPHEVGNLFRLQNLTLTNNYFLGKILTDLSH-CSNLMKFEASNNKLEGEIPVKISNLLM 131
              IP E+ +L  L++L L+NN F G    ++S    NL   +  NN L G++PV ++NL  
Sbjct:   108 PIPPEISSLSGLRHLNLSNNVFNGSFPDEISSGLVNLRVLDVYNNNLTGDLPVSVTNLTQ 167

Query:   132 LQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVAY-NQF 190
             L+ L++  N+  G++P S G+   ++ + V GN L G+IP  I ++  L    + Y N F
Sbjct:   168 LRHLHLGGNYFAGKIPPSYGSWPVIEYLAVSGNELVGKIPPEIGNLTTLRELYIGYYNAF 227

Query:   191 SGMIPP-IYNISSLQYIFIHTN-RFHGSVPLDNGVNLPNLRYFSISGNNLTGSLQDSLSN 248
                +PP I N+S L   F   N    G +P + G  L  L    +  N  +G L   L  
Sbjct:   228 EDGLPPEIGNLSELVR-FDGANCGLTGEIPPEIG-KLQKLDTLFLQVNVFSGPLTWELGT 285

Query:   249 ATNLQGLEINRNLFSGKVSINFSRLQNLSRLNLGENNLGTGTTNDLDFITLLTNCTKLEV 308
              ++L+ ++++ N+F+G++  +F+ L+NL+ LNL  N L  G   +  FI  L    +LEV
Sbjct:   286 LSSLKSMDLSNNMFTGEIPASFAELKNLTLLNLFRNKLH-GEIPE--FIGDLP---ELEV 339

Query:   309 LDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQISDTIPDVIANLVNLNALGVESNQLAGT 368
             L L  N F G +P  L   +  +  + + SN+++ T+P  + +   L  L    N L G+
Sbjct:   340 LQLWENNFTGSIPQKLGE-NGKLNLVDLSSNKLTGTLPPNMCSGNKLETLITLGNFLFGS 398

Query:   369 IPLAIGELKSIQILFLNENFLRGTIPSSXXXXXXXXXXXXEVNNLQGKIPPSNGNCQNLI 428
             IP ++G+ +S+  + + ENFL G+IP              + N L G++P + G   NL 
Sbjct:   399 IPDSLGKCESLTRIRMGENFLNGSIPKGLFGLPKLTQVELQDNYLSGELPVAGGVSVNLG 458

Query:   429 LLTTRKNKLSGIVPRQLLRIITXXXXXXXXXXXXXGHFPTKVGNLKNLVSLDISSNMFSG 488
              ++   N+LSG +P  +    T             G  P++VG L+ L  +D S N+FSG
Sbjct:   459 QISLSNNQLSGPLPPAIGNF-TGVQKLLLDGNKFQGPIPSEVGKLQQLSKIDFSHNLFSG 517

Query:   489 EIPTTLGGCTSLEYLGMQDNSFTISIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFL 548
              I   +  C  L ++ +  N  +  IP+ ++++K +  L+LSRN+L G IP  + ++  L
Sbjct:   518 RIAPEISRCKLLTFVDLSRNELSGEIPNEITAMKILNYLNLSRNHLVGSIPGSISSMQSL 577

Query:   549 LFLNMSYNHFEGKVP 563
               L+ SYN+  G VP
Sbjct:   578 TSLDFSYNNLSGLVP 592

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0010075 "regulation of meristem growth" evidence=IGI;RCA

GO:0048229 "gametophyte development" evidence=IGI

GO:0048437 "floral organ development" evidence=IGI

GO:0010480 "microsporocyte differentiation" evidence=IGI

GO:0048653 "anther development" evidence=IGI;RCA

GO:0009934 "regulation of meristem structural organization" evidence=IGI

GO:0005515 "protein binding" evidence=IPI

GO:0033612 "receptor serine/threonine kinase binding" evidence=IPI

GO:0043621 "protein self-association" evidence=IDA

GO:0000271 "polysaccharide biosynthetic process" evidence=RCA

GO:0007020 "microtubule nucleation" evidence=RCA

GO:0009825 "multidimensional cell growth" evidence=RCA

GO:0009932 "cell tip growth" evidence=RCA

GO:0010817 "regulation of hormone levels" evidence=RCA

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

GO:0071555 "cell wall organization" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.01840019 hypothetical protein (1008 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	566
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-78
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-49
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-43
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	6e-34
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-30
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-13
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-12
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-11
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-11
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-11
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	6e-11
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	7e-11
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	5e-09
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	5e-09
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	6e-09
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	9e-09
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-05
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-05
pfam08263	42	pfam08263, LRRNT_2, Leucine rich repeat N-terminal	4e-05
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	7e-05
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	1e-04
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	0.001
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.002

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  265 bits (680), Expect = 2e-78
 Identities = 176/563 (31%), Positives = 288/563 (51%), Gaps = 61/563 (10%)

Query: 2   KSQLQDPLGVTSSWNNSINLCQWTGVTCGHRRQRVTGLDLRHQSVGGVLSPFVGNLNFLR 61
           KS + DPL   S+WN+S ++C W G+TC +   RV  +DL  +++ G +S  +  L +++
Sbjct: 38  KSSINDPLKYLSNWNSSADVCLWQGITCNNS-SRVVSIDLSGKNISGKISSAIFRLPYIQ 96

Query: 62  SINLPNNSFRGKIPHEVGNLFRLQNLTLTNNYFLGKILTDLSHCSNLMKFEASNNKLEGE 121
           +INL NN   G IP ++                           S+L     SNN   G 
Sbjct: 97  TINLSNNQLSGPIPDDIFTT-----------------------SSSLRYLNLSNNNFTGS 133

Query: 122 IPVKISNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLI 181
           IP    ++  L+ L+++ N L G++P  IG+ S+L+ +D+ GN L G+IP++++++ +L 
Sbjct: 134 IPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLE 191

Query: 182 SFNVAYNQFSGMIP-PIYNISSLQYIFIHTNRFHGSVPLDNGVNLPNLRYFSISGNNLTG 240
              +A NQ  G IP  +  + SL++I++  N   G +P + G  L +L +  +  NNLTG
Sbjct: 192 FLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIG-GLTSLNHLDLVYNNLTG 250

Query: 241 SLQDSLSNATNLQGLEINRNLFSGKVSINFSRLQNLSRLNLGENNLGTGTTNDLDFITLL 300
            +  SL N  NLQ L + +N  SG +  +   LQ L  L+L +N+L        +   L+
Sbjct: 251 PIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSG------EIPELV 304

Query: 301 TNCTKLEVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQISDTIPDVIANLVNLNALGV 360
                LE+L L SN F G                          IP  + +L  L  L +
Sbjct: 305 IQLQNLEILHLFSNNFTG-------------------------KIPVALTSLPRLQVLQL 339

Query: 361 ESNQLAGTIPLAIGELKSIQILFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPS 420
            SN+ +G IP  +G+  ++ +L L+ N L G IP  L +   L +LIL  N+L+G+IP S
Sbjct: 340 WSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKS 399

Query: 421 NGNCQNLILLTTRKNKLSGIVPRQLLRIITLSVLLDLSDNLLSGHFPTKVGNLKNLVSLD 480
            G C++L  +  + N  SG +P +  + + L   LD+S+N L G   ++  ++ +L  L 
Sbjct: 400 LGACRSLRRVRLQDNSFSGELPSEFTK-LPLVYFLDISNNNLQGRINSRKWDMPSLQMLS 458

Query: 481 ISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTISIPSTLSSLKSITELDLSRNNLSGHIPQ 540
           ++ N F G +P + G    LE L +  N F+ ++P  L SL  + +L LS N LSG IP 
Sbjct: 459 LARNKFFGGLPDSFGS-KRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPD 517

Query: 541 YLENLSFLLFLNMSYNHFEGKVP 563
            L +   L+ L++S+N   G++P
Sbjct: 518 ELSSCKKLVSLDLSHNQLSGQIP 540

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  183 bits (467), Expect = 2e-49
 Identities = 135/456 (29%), Positives = 223/456 (48%), Gaps = 35/456 (7%)

Query: 39  LDLRHQSVGGVLSPFVGNLNFLRSINLPNNSFRGKIPHEVGNLFRLQNLTLTNNYFLGKI 98
           LDL    + G +   + NL  L  + L +N   G+IP E+G +  L+ + L  N   G+I
Sbjct: 169 LDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEI 228

Query: 99  LTDLSHCSNLMKFEASNNKLEGEIPVKISNLLMLQILNIAENHLKGQLPASIGNLSALQE 158
             ++   ++L   +   N L G IP  + NL  LQ L + +N L G +P SI +L  L  
Sbjct: 229 PYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLIS 288

Query: 159 IDVRGNRLGGRIPSTISHVRNLISFNVAYNQFSGMIP-PIYNISSLQYIFIHTNRFHGSV 217
           +D+  N L G IP  +  ++NL   ++  N F+G IP  + ++  LQ + + +N+F G +
Sbjct: 289 LDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEI 348

Query: 218 PLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINRNLFSGKVSINFSRLQNLS 277
           P + G +  NL    +S NNLTG + + L ++ NL  L +  N   G++  +    ++L 
Sbjct: 349 PKNLGKH-NNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLR 407

Query: 278 RLNLGENNLGTGTTNDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSTTMTEIAIG 337
           R+ L +N+      ++          TKL ++                        + I 
Sbjct: 408 RVRLQDNSFSGELPSEF---------TKLPLVYF----------------------LDIS 436

Query: 338 SNQISDTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSIQILFLNENFLRGTIPSSL 397
           +N +   I     ++ +L  L +  N+  G +P + G  K ++ L L+ N   G +P  L
Sbjct: 437 NNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGS-KRLENLDLSRNQFSGAVPRKL 495

Query: 398 GNLTLLTQLILEVNNLQGKIPPSNGNCQNLILLTTRKNKLSGIVPRQLLRIITLSVLLDL 457
           G+L+ L QL L  N L G+IP    +C+ L+ L    N+LSG +P     +  LS  LDL
Sbjct: 496 GSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLS-QLDL 554

Query: 458 SDNLLSGHFPTKVGNLKNLVSLDISSNMFSGEIPTT 493
           S N LSG  P  +GN+++LV ++IS N   G +P+T
Sbjct: 555 SQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPST 590

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  165 bits (420), Expect = 2e-43
 Identities = 135/414 (32%), Positives = 198/414 (47%), Gaps = 57/414 (13%)

Query: 152 NLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVAYNQFSGMIPPIYNISSLQYIFIHTN 211
           N S +  ID+ G  + G+I S I  +  + + N++ NQ SG IP   +I +         
Sbjct: 67  NSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIP--DDIFTTSS------ 118

Query: 212 RFHGSVPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINRNLFSGKVSINFS 271
                          +LRY ++S NN TGS+     +  NL+ L+++ N+ SG++     
Sbjct: 119 ---------------SLRYLNLSNNNFTGSI--PRGSIPNLETLDLSNNMLSGEIP---- 157

Query: 272 RLQNLSRLNLGENNLGTGTTNDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSTTM 331
                               ND+   +       L+VLDL  N   G +P SL NL T++
Sbjct: 158 --------------------NDIGSFS------SLKVLDLGGNVLVGKIPNSLTNL-TSL 190

Query: 332 TEIAIGSNQISDTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSIQILFLNENFLRG 391
             + + SNQ+   IP  +  + +L  + +  N L+G IP  IG L S+  L L  N L G
Sbjct: 191 EFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTG 250

Query: 392 TIPSSLGNLTLLTQLILEVNNLQGKIPPSNGNCQNLILLTTRKNKLSGIVPRQLLRIITL 451
            IPSSLGNL  L  L L  N L G IPPS  + Q LI L    N LSG +P  ++++  L
Sbjct: 251 PIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNL 310

Query: 452 SVLLDLSDNLLSGHFPTKVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFT 511
            +L   S+N  +G  P  + +L  L  L + SN FSGEIP  LG   +L  L +  N+ T
Sbjct: 311 EILHLFSNNF-TGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLT 369

Query: 512 ISIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLLFLNMSYNHFEGKVPIE 565
             IP  L S  ++ +L L  N+L G IP+ L     L  + +  N F G++P E
Sbjct: 370 GEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSE 423

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  137 bits (346), Expect = 6e-34
 Identities = 93/265 (35%), Positives = 147/265 (55%), Gaps = 5/265 (1%)

Query: 301 TNCTKLEVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQISDTIPDVIANLV-NLNALG 359
            N +++  +DL      G +  ++  L    T I + +NQ+S  IPD I     +L  L 
Sbjct: 66  NNSSRVVSIDLSGKNISGKISSAIFRLPYIQT-INLSNNQLSGPIPDDIFTTSSSLRYLN 124

Query: 360 VESNQLAGTIPLAIGELKSIQILFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPP 419
           + +N   G+IP   G + +++ L L+ N L G IP+ +G+ + L  L L  N L GKIP 
Sbjct: 125 LSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPN 182

Query: 420 SNGNCQNLILLTTRKNKLSGIVPRQLLRIITLSVLLDLSDNLLSGHFPTKVGNLKNLVSL 479
           S  N  +L  LT   N+L G +PR+L ++ +L   + L  N LSG  P ++G L +L  L
Sbjct: 183 SLTNLTSLEFLTLASNQLVGQIPRELGQMKSLK-WIYLGYNNLSGEIPYEIGGLTSLNHL 241

Query: 480 DISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTISIPSTLSSLKSITELDLSRNNLSGHIP 539
           D+  N  +G IP++LG   +L+YL +  N  +  IP ++ SL+ +  LDLS N+LSG IP
Sbjct: 242 DLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIP 301

Query: 540 QYLENLSFLLFLNMSYNHFEGKVPI 564
           + +  L  L  L++  N+F GK+P+
Sbjct: 302 ELVIQLQNLEILHLFSNNFTGKIPV 326

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  127 bits (320), Expect = 1e-30
 Identities = 108/387 (27%), Positives = 172/387 (44%), Gaps = 80/387 (20%)

Query: 34  QRVTGLDLRHQSVGGVLSPFVGNLNFLRSINLPNNSFRGKIPHEVGNLFRLQNLTLTNNY 93
           Q++  LDL   S+ G +   V  L  L  ++L +N+F GKIP  + +L RLQ L L +N 
Sbjct: 284 QKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNK 343

Query: 94  FLGKILTDLSHCSNLMKFEASNNKLEGEIPVKISNLLMLQILNIAENHLKGQLPASIGNL 153
           F G+I  +L   +NL   + S N L GEIP  + +   L  L +  N L+G++P S+G  
Sbjct: 344 FSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGAC 403

Query: 154 SALQEIDVRGNRLGGRIPSTISHVRNLISFNVAYNQFSGMIPPIYNISSLQYIFIHTNRF 213
            +L+ + ++ N   G +PS  +                                      
Sbjct: 404 RSLRRVRLQDNSFSGELPSEFT-------------------------------------- 425

Query: 214 HGSVPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINRNLFSGKVSINFSRL 273
                      LP + +  IS NNL G +     +  +LQ L + RN F G +  +F   
Sbjct: 426 ----------KLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF--- 472

Query: 274 QNLSRLNLGENNLGTGTTNDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSTTMTE 333
                                          +LE LDL  N+F G +P  L +LS  M +
Sbjct: 473 ----------------------------GSKRLENLDLSRNQFSGAVPRKLGSLSELM-Q 503

Query: 334 IAIGSNQISDTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSIQILFLNENFLRGTI 393
           + +  N++S  IPD +++   L +L +  NQL+G IP +  E+  +  L L++N L G I
Sbjct: 504 LKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEI 563

Query: 394 PSSLGNLTLLTQLILEVNNLQGKIPPS 420
           P +LGN+  L Q+ +  N+L G +P +
Sbjct: 564 PKNLGNVESLVQVNISHNHLHGSLPST 590

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 71.8 bits (176), Expect = 3e-13
 Identities = 49/158 (31%), Positives = 71/158 (44%), Gaps = 33/158 (20%)

Query: 1   MKSQLQDPLGVTSSWNNSINLCQ---WTGVTCGHRRQR----VTGLDLRHQSVGGVLSPF 53
           +KS L  PL     WN    + Q   W+G  C     +    + GL L +Q + G +   
Sbjct: 380 LKSSLGLPLRF--GWNGDPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQGLRGFIPND 437

Query: 54  VGNLNFLRSINLPNNSFRGKIPHEVGNLFRLQNLTLTNNYFLGKILTDLSHCSNLMKFEA 113
           +  L  L+SINL  NS RG IP  +G++  L+ L             DLS+         
Sbjct: 438 ISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVL-------------DLSY--------- 475

Query: 114 SNNKLEGEIPVKISNLLMLQILNIAENHLKGQLPASIG 151
             N   G IP  +  L  L+ILN+  N L G++PA++G
Sbjct: 476 --NSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 70.2 bits (172), Expect = 1e-12
 Identities = 31/116 (26%), Positives = 58/116 (50%), Gaps = 24/116 (20%)

Query: 59  FLRSINLPNNSFRGKIPHEVGNLFRLQNLTLTNNYFLGKILTDLSHCSNLMKFEASNNKL 118
           F+  + L N   RG IP+++  L  LQ++ L                        S N +
Sbjct: 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINL------------------------SGNSI 454

Query: 119 EGEIPVKISNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTI 174
            G IP  + ++  L++L+++ N   G +P S+G L++L+ +++ GN L GR+P+ +
Sbjct: 455 RGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAAL 510

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 67.1 bits (164), Expect = 1e-11
 Identities = 36/85 (42%), Positives = 51/85 (60%)

Query: 455 LDLSDNLLSGHFPTKVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTISI 514
           L L +  L G  P  +  L++L S+++S N   G IP +LG  TSLE L +  NSF  SI
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 515 PSTLSSLKSITELDLSRNNLSGHIP 539
           P +L  L S+  L+L+ N+LSG +P
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVP 507

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 66.8 bits (163), Expect = 2e-11
 Identities = 30/78 (38%), Positives = 49/78 (62%)

Query: 345 IPDVIANLVNLNALGVESNQLAGTIPLAIGELKSIQILFLNENFLRGTIPSSLGNLTLLT 404
           IP+ I+ L +L ++ +  N + G IP ++G + S+++L L+ N   G+IP SLG LT L 
Sbjct: 434 IPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLR 493

Query: 405 QLILEVNNLQGKIPPSNG 422
            L L  N+L G++P + G
Sbjct: 494 ILNLNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 66.0 bits (161), Expect = 2e-11
 Identities = 37/91 (40%), Positives = 53/91 (58%)

Query: 355 LNALGVESNQLAGTIPLAIGELKSIQILFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQ 414
           ++ LG+++  L G IP  I +L+ +Q + L+ N +RG IP SLG++T L  L L  N+  
Sbjct: 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFN 479

Query: 415 GKIPPSNGNCQNLILLTTRKNKLSGIVPRQL 445
           G IP S G   +L +L    N LSG VP  L
Sbjct: 480 GSIPESLGQLTSLRILNLNGNSLSGRVPAAL 510

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 64.8 bits (158), Expect = 6e-11
 Identities = 28/81 (34%), Positives = 48/81 (59%)

Query: 115 NNKLEGEIPVKISNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTI 174
           N  L G IP  IS L  LQ +N++ N ++G +P S+G++++L+ +D+  N   G IP ++
Sbjct: 427 NQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESL 486

Query: 175 SHVRNLISFNVAYNQFSGMIP 195
             + +L   N+  N  SG +P
Sbjct: 487 GQLTSLRILNLNGNSLSGRVP 507

Length = 623

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 64.9 bits (158), Expect = 7e-11
 Identities = 45/133 (33%), Positives = 68/133 (51%), Gaps = 1/133 (0%)

Query: 32  RRQRVTGLDLRHQSVGGVLSPFVGNLNFLRSINLPNNSFRGKIPHEVGNLFRLQNLTLTN 91
             +R+  LDL      G +   +G+L+ L  + L  N   G+IP E+ +  +L +L L++
Sbjct: 473 GSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSH 532

Query: 92  NYFLGKILTDLSHCSNLMKFEASNNKLEGEIPVKISNLLMLQILNIAENHLKGQLPASIG 151
           N   G+I    S    L + + S N+L GEIP  + N+  L  +NI+ NHL G LP S G
Sbjct: 533 NQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLP-STG 591

Query: 152 NLSALQEIDVRGN 164
              A+    V GN
Sbjct: 592 AFLAINASAVAGN 604

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 58.7 bits (142), Expect = 5e-09
 Identities = 30/94 (31%), Positives = 50/94 (53%), Gaps = 1/94 (1%)

Query: 309 LDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQISDTIPDVIANLVNLNALGVESNQLAGT 368
           L L +    G +P  ++ L   +  I +  N I   IP  + ++ +L  L +  N   G+
Sbjct: 423 LGLDNQGLRGFIPNDISKLRH-LQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS 481

Query: 369 IPLAIGELKSIQILFLNENFLRGTIPSSLGNLTL 402
           IP ++G+L S++IL LN N L G +P++LG   L
Sbjct: 482 IPESLGQLTSLRILNLNGNSLSGRVPAALGGRLL 515

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 58.7 bits (142), Expect = 5e-09
 Identities = 33/93 (35%), Positives = 51/93 (54%), Gaps = 1/93 (1%)

Query: 379 IQILFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSNGNCQNLILLTTRKNKLS 438
           I  L L+   LRG IP+ +  L  L  + L  N+++G IPPS G+  +L +L    N  +
Sbjct: 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFN 479

Query: 439 GIVPRQLLRIITLSVLLDLSDNLLSGHFPTKVG 471
           G +P  L ++ +L +L  L+ N LSG  P  +G
Sbjct: 480 GSIPESLGQLTSLRILN-LNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 58.3 bits (141), Expect = 6e-09
 Identities = 27/85 (31%), Positives = 48/85 (56%), Gaps = 1/85 (1%)

Query: 135 LNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVAYNQFSGMI 194
           L +    L+G +P  I  L  LQ I++ GN + G IP ++  + +L   +++YN F+G I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 195 P-PIYNISSLQYIFIHTNRFHGSVP 218
           P  +  ++SL+ + ++ N   G VP
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVP 507

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 57.9 bits (140), Expect = 9e-09
 Identities = 25/64 (39%), Positives = 40/64 (62%)

Query: 455 LDLSDNLLSGHFPTKVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTISI 514
           ++LS N + G+ P  +G++ +L  LD+S N F+G IP +LG  TSL  L +  NS +  +
Sbjct: 447 INLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRV 506

Query: 515 PSTL 518
           P+ L
Sbjct: 507 PAAL 510

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 46.7 bits (111), Expect = 2e-05
 Identities = 34/102 (33%), Positives = 51/102 (50%), Gaps = 26/102 (25%)

Query: 166 LGGRIPSTISHVRNLISFNVAYNQFSGMIPP-IYNISSLQYIFIHTNRFHGSVPLDNGVN 224
           L G IP+ IS +R+L S N++ N   G IPP + +I+SL+              LD    
Sbjct: 430 LRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEV-------------LD---- 472

Query: 225 LPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINRNLFSGKV 266
                   +S N+  GS+ +SL   T+L+ L +N N  SG+V
Sbjct: 473 --------LSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRV 506

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 46.7 bits (111), Expect = 3e-05
 Identities = 19/50 (38%), Positives = 34/50 (68%)

Query: 514 IPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLLFLNMSYNHFEGKVP 563
           IP+ +S L+ +  ++LS N++ G+IP  L +++ L  L++SYN F G +P
Sbjct: 434 IPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIP 483

Length = 623

>gnl|CDD|219766 pfam08263, LRRNT_2, Leucine rich repeat N-terminal domain

 Score = 40.4 bits (95), Expect = 4e-05
 Identities = 18/31 (58%), Positives = 20/31 (64%), Gaps = 2/31 (6%)

Query: 1  MKSQLQ-DPLGVTSSWN-NSINLCQWTGVTC 29
           KS L  DP G  SSWN +S + C WTGVTC
Sbjct: 11 FKSSLNGDPSGALSSWNPSSSDPCSWTGVTC 41

Leucine Rich Repeats pfam00560 are short sequence motifs present in a number of proteins with diverse functions and cellular locations. Leucine Rich Repeats are often flanked by cysteine rich domains. This domain is often found at the N-terminus of tandem leucine rich repeats. Length = 42

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 45.0 bits (106), Expect = 7e-05
 Identities = 67/265 (25%), Positives = 110/265 (41%), Gaps = 9/265 (3%)

Query: 50  LSPFVGNLNFLRSINLPNNSFRGKIPHEVGNLFRLQNLTLTNNYFLGKILTDLSHCSNLM 109
            S  + NL  L S++L  N  R  I   +  L  L +L L NN             SNL 
Sbjct: 85  GSENLLNLLPLPSLDLNLNRLRSNISELL-ELTNLTSLDLDNNNITDIPPLIGLLKSNLK 143

Query: 110 KFEASNNKLEGEIPVKISNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGR 169
           + + S+NK+E  +P  + NL  L+ L+++ N L   LP  + NLS L  +D+ GN++   
Sbjct: 144 ELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKIS-D 200

Query: 170 IPSTISHVRNLISFNVAYNQFSGMIPPIYNISSLQYIFIHTNRFHGSVPLDNGVNLPNLR 229
           +P  I  +  L   +++ N    ++  + N+ +L  + +  N+           NL NL 
Sbjct: 201 LPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIG--NLSNLE 258

Query: 230 YFSISGNNLTGSLQDSLSNATNLQGLEINRNLFSGKVSINFSRLQNLSRLNLGENNLGTG 289
              +S N ++     SL + TNL+ L+++ N  S       + L  L  L L        
Sbjct: 259 TLDLSNNQISSI--SSLGSLTNLRELDLSGNSLS-NALPLIALLLLLLELLLNLLLTLKA 315

Query: 290 TTNDLDFITLLTNCTKLEVLDLHSN 314
               L+ I L  N            
Sbjct: 316 LELKLNSILLNNNILSNGETSSPEA 340

Length = 394

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 44.6 bits (105), Expect = 1e-04
 Identities = 87/324 (26%), Positives = 141/324 (43%), Gaps = 21/324 (6%)

Query: 221 NGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINRNLFSGKVSINFSRLQNLSRLN 280
           N +NL  L    ++ N L  ++   L   TNL  L+++ N  +    +      NL  L+
Sbjct: 88  NLLNLLPLPSLDLNLNRLRSNI-SELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELD 146

Query: 281 LGENNLGTGTTNDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQ 340
           L +N +           + L N   L+ LDL  N     LP  L+NLS     + +  N+
Sbjct: 147 LSDNKI-------ESLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNL-NNLDLSGNK 197

Query: 341 ISDTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSIQILFLNENFLRGTIPSSLGNL 400
           ISD +P  I  L  L  L + +N +   +  ++  LK++  L L+ N L   +P S+GNL
Sbjct: 198 ISD-LPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGNL 254

Query: 401 TLLTQLILEVNNLQGKIPPSNGNCQNLILLTTRKNKLSGIVPRQLLRIITLSVLLDLSDN 460
           + L  L  +++N Q     S G+  NL  L    N LS  +P   L ++ L +LL+L   
Sbjct: 255 SNLETL--DLSNNQISSISSLGSLTNLRELDLSGNSLSNALPLIALLLLLLELLLNLLLT 312

Query: 461 LLSGHFPTKVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTISIPSTLSS 520
           L       ++     L++ +I SN      P  L    SL  L   DN+   S  +    
Sbjct: 313 LK----ALELKLNSILLNNNILSNGE-TSSPEALSILESLNNLWTLDNALDESNLNRY-I 366

Query: 521 LKSITELDLSRNNLSGHIPQYLEN 544
           +K+   +    + +  H+ Q LE 
Sbjct: 367 VKNPNAIGSLLDLVKKHVNQLLEK 390

Length = 394

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 41.7 bits (98), Expect = 0.001
 Identities = 21/62 (33%), Positives = 41/62 (66%)

Query: 225 LPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINRNLFSGKVSINFSRLQNLSRLNLGEN 284
           L +L+  ++SGN++ G++  SL + T+L+ L+++ N F+G +  +  +L +L  LNL  N
Sbjct: 441 LRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGN 500

Query: 285 NL 286
           +L
Sbjct: 501 SL 502

Length = 623

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 36.4 bits (85), Expect = 0.002
 Identities = 23/60 (38%), Positives = 31/60 (51%)

Query: 475 NLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTISIPSTLSSLKSITELDLSRNNL 534
           NL SLD+S+N  +        G  +L+ L +  N+ T   P   S L S+  LDLS NNL
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	566
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG0472	565	consensus Leucine-rich repeat protein [Function un	100.0
KOG0472	565	consensus Leucine-rich repeat protein [Function un	100.0
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.98
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.97
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.97
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.96
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.91
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.9
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.89
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.87
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.81
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.79
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.73
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.72
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.7
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.69
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.65
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.61
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.32
PLN03150	623	hypothetical protein; Provisional	99.32
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.29
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.26
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.21
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.18
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.08
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.07
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	99.05
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.04
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	99.02
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.01
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.0
PLN03150	623	hypothetical protein; Provisional	98.96
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.95
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.92
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.92
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.89
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.73
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.64
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.62
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.57
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.55
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.39
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.36
KOG4341	483	consensus F-box protein containing LRR [General fu	98.32
KOG4341	483	consensus F-box protein containing LRR [General fu	98.32
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.26
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.25
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.15
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	98.08
PRK15386	426	type III secretion protein GogB; Provisional	98.04
PRK15386	426	type III secretion protein GogB; Provisional	98.02
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.93
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.91
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.85
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.85
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.82
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.79
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.74
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.74
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.58
PF08263	43	LRRNT_2: Leucine rich repeat N-terminal domain; In	97.37
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.03
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.02
KOG1947	482	consensus Leucine rich repeat proteins, some prote	96.94
KOG1947	482	consensus Leucine rich repeat proteins, some prote	96.69
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.59
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.19
KOG4308	478	consensus LRR-containing protein [Function unknown	95.4
KOG3864	221	consensus Uncharacterized conserved protein [Funct	95.11
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.1
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	94.95
KOG3864	221	consensus Uncharacterized conserved protein [Funct	93.7
KOG4308	478	consensus LRR-containing protein [Function unknown	93.27
KOG0473	326	consensus Leucine-rich repeat protein [Function un	92.47
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	92.1
KOG0473	326	consensus Leucine-rich repeat protein [Function un	91.68
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	87.87
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	87.13
smart00370	26	LRR Leucine-rich repeats, outliers.	87.13
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	85.74
smart00370	26	LRR Leucine-rich repeats, outliers.	85.74

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=8.7e-64  Score=553.40  Aligned_cols=552  Identities=35%  Similarity=0.582  Sum_probs=508.7

Q ss_pred             CcccCCCCCCCCCCCcCCCCCCcccccccCCCCCcEEEEEcCCCccccccCccCcCCCCCCEEecCCCcccccCCccc-C
Q 046712            1 MKSQLQDPLGVTSSWNNSINLCQWTGVTCGHRRQRVTGLDLRHQSVGGVLSPFVGNLNFLRSINLPNNSFRGKIPHEV-G   79 (566)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~i~~~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~-~   79 (566)
                      |++++.||.+++++|+..++||.|.|+.|... .+|+.|+++++.+.+..+..|..+++|++|++++|.+.+.+|..+ .
T Consensus        37 ~~~~~~~~~~~~~~w~~~~~~c~w~gv~c~~~-~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~  115 (968)
T PLN00113         37 FKSSINDPLKYLSNWNSSADVCLWQGITCNNS-SRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFT  115 (968)
T ss_pred             HHHhCCCCcccCCCCCCCCCCCcCcceecCCC-CcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhc
Confidence            56778899999999999999999999999865 799999999999999999999999999999999999987788765 4


Q ss_pred             CCCCCCEEeCCCCcCCCcCccccccCCCCcEEEcCCCcCCCCcchhccCCCCCCEEecccccCCCCCCccccCCCCCCEE
Q 046712           80 NLFRLQNLTLTNNYFLGKILTDLSHCSNLMKFEASNNKLEGEIPVKISNLLMLQILNIAENHLKGQLPASIGNLSALQEI  159 (566)
Q Consensus        80 ~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L  159 (566)
                      .+++|++|++++|.+++..+.  ..+++|++|++++|.+.+..|..++.+++|++|++++|.+.+.+|..+.++++|++|
T Consensus       116 ~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L  193 (968)
T PLN00113        116 TSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFL  193 (968)
T ss_pred             cCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCee
Confidence            999999999999998876654  468999999999999988899999999999999999999988999999999999999


Q ss_pred             EccCCcCcccCCcccccCCcccEeecccccceecCC-cccCcccCceEecccccccccCCCCCCCCCCCCcEEEcccccc
Q 046712          160 DVRGNRLGGRIPSTISHVRNLISFNVAYNQFSGMIP-PIYNISSLQYIFIHTNRFHGSVPLDNGVNLPNLRYFSISGNNL  238 (566)
Q Consensus       160 ~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  238 (566)
                      ++++|.+.+..|..++.+++|+.|++++|.+.+..+ .+..+++|++|++++|.+.+.+|.... .+++|+.|++++|.+
T Consensus       194 ~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~L~~n~l  272 (968)
T PLN00113        194 TLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLG-NLKNLQYLFLYQNKL  272 (968)
T ss_pred             eccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHh-CCCCCCEEECcCCee
Confidence            999999998899999999999999999999887665 788999999999999999887777665 899999999999999


Q ss_pred             cccCcccccccCCCCeeecccccccccccccccCCCCCcEEECCCCccCCcCCCChhhhhhccCCCCCCEEEccCCeeee
Q 046712          239 TGSLQDSLSNATNLQGLEINRNLFSGKVSINFSRLQNLSRLNLGENNLGTGTTNDLDFITLLTNCTKLEVLDLHSNRFGG  318 (566)
Q Consensus       239 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~  318 (566)
                      .+..+..+..+++|+.|++++|.+....+..+..+++|+.|++++|.+....+      ..+..+++|+.|++++|.+.+
T Consensus       273 ~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~------~~~~~l~~L~~L~L~~n~l~~  346 (968)
T PLN00113        273 SGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIP------VALTSLPRLQVLQLWSNKFSG  346 (968)
T ss_pred             eccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCC------hhHhcCCCCCEEECcCCCCcC
Confidence            88888889999999999999999988888888999999999999998876555      457789999999999999998


Q ss_pred             ecchhHhhhccCCcEEEccCCCCCCCcchhhhccCCCCeecccCCcccccccccccCCCCCCEEEccCCcccccCCcccc
Q 046712          319 VLPFSLANLSTTMTEIAIGSNQISDTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSIQILFLNENFLRGTIPSSLG  398 (566)
Q Consensus       319 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~  398 (566)
                      ..|..+... ++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+++..|..+.
T Consensus       347 ~~p~~l~~~-~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~  425 (968)
T PLN00113        347 EIPKNLGKH-NNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFT  425 (968)
T ss_pred             cCChHHhCC-CCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHh
Confidence            888877665 8999999999999988999999999999999999999988999999999999999999999988999999


Q ss_pred             CCCCCCeEeccCccccccCCCCCcCCCCCcEEEccCCcceeccchhhhhhcccceEEEccCCcccccCCcCccCCCCCCE
Q 046712          399 NLTLLTQLILEVNNLQGKIPPSNGNCQNLILLTTRKNKLSGIVPRQLLRIITLSVLLDLSDNLLSGHFPTKVGNLKNLVS  478 (566)
Q Consensus       399 ~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~  478 (566)
                      .++.|+.|++++|.+.+..+..+..+++|+.|++++|++.+..|..+. . ..++.|++++|++.+..+..+..+++|+.
T Consensus       426 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~-~-~~L~~L~ls~n~l~~~~~~~~~~l~~L~~  503 (968)
T PLN00113        426 KLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFG-S-KRLENLDLSRNQFSGAVPRKLGSLSELMQ  503 (968)
T ss_pred             cCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccc-c-ccceEEECcCCccCCccChhhhhhhccCE
Confidence            999999999999999998888888999999999999999887776543 2 44599999999999999999999999999


Q ss_pred             EeCccccccccCCccccCCCCCcEEeCCCCcccccCCcCCcCCCCCCEEeCCCCccccccCccccccccCceeecccCcC
Q 046712          479 LDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTISIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLLFLNMSYNHF  558 (566)
Q Consensus       479 L~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~  558 (566)
                      |++++|.+.+.+|..+..+++|++|+|++|.+++.+|+.+..+++|+.|++++|++.+.+|..+..+++|+.|++++|++
T Consensus       504 L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l  583 (968)
T PLN00113        504 LKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHL  583 (968)
T ss_pred             EECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcc
Confidence            99999999989999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccCCCC
Q 046712          559 EGKVPIE  565 (566)
Q Consensus       559 ~~~~p~~  565 (566)
                      +|.+|..
T Consensus       584 ~~~~p~~  590 (968)
T PLN00113        584 HGSLPST  590 (968)
T ss_pred             eeeCCCc
Confidence            9999963

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=9.1e-54  Score=473.59  Aligned_cols=511  Identities=30%  Similarity=0.496  Sum_probs=464.2

Q ss_pred             CcEEEEEcCCCccccccCccC-cCCCCCCEEecCCCcccccCCcccCCCCCCCEEeCCCCcCCCcCccccccCCCCcEEE
Q 046712           34 QRVTGLDLRHQSVGGVLSPFV-GNLNFLRSINLPNNSFRGKIPHEVGNLFRLQNLTLTNNYFLGKILTDLSHCSNLMKFE  112 (566)
Q Consensus        34 ~~~~~l~l~~~~i~~~~~~~~-~~l~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~  112 (566)
                      +.+++|++++|.+.+.+|..+ ..+++|++|++++|.+.+.+|.  ..+++|++|++++|.+.+..+..+.++++|++|+
T Consensus        93 ~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~  170 (968)
T PLN00113         93 PYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLD  170 (968)
T ss_pred             CCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCChHHhcCCCCCEEE
Confidence            789999999999987777654 5999999999999999877774  5689999999999999888899999999999999


Q ss_pred             cCCCcCCCCcchhccCCCCCCEEecccccCCCCCCccccCCCCCCEEEccCCcCcccCCcccccCCcccEeeccccccee
Q 046712          113 ASNNKLEGEIPVKISNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVAYNQFSG  192 (566)
Q Consensus       113 l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~  192 (566)
                      +++|.+.+.+|..+.++++|++|++++|.+.+.+|..++.+++|++|++++|.+.+.+|..++.+++|++|++++|.+.+
T Consensus       171 L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~  250 (968)
T PLN00113        171 LGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTG  250 (968)
T ss_pred             CccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceecc
Confidence            99999988899999999999999999999998999999999999999999999998999999999999999999999886


Q ss_pred             cCC-cccCcccCceEecccccccccCCCCCCCCCCCCcEEEcccccccccCcccccccCCCCeeeccccccccccccccc
Q 046712          193 MIP-PIYNISSLQYIFIHTNRFHGSVPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINRNLFSGKVSINFS  271 (566)
Q Consensus       193 ~~~-~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~  271 (566)
                      ..+ .+..+++|+.|++++|.+.+.+|.... .+++|++|++++|.+.+..+..+.++++|+.|++++|.+.+..+..+.
T Consensus       251 ~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~  329 (968)
T PLN00113        251 PIPSSLGNLKNLQYLFLYQNKLSGPIPPSIF-SLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALT  329 (968)
T ss_pred             ccChhHhCCCCCCEEECcCCeeeccCchhHh-hccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHh
Confidence            666 788999999999999999887777665 889999999999999888888899999999999999999888888899


Q ss_pred             CCCCCcEEECCCCccCCcCCCChhhhhhccCCCCCCEEEccCCeeeeecchhHhhhccCCcEEEccCCCCCCCcchhhhc
Q 046712          272 RLQNLSRLNLGENNLGTGTTNDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQISDTIPDVIAN  351 (566)
Q Consensus       272 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~  351 (566)
                      .+++|+.|++++|.+....+      ..+..+++|+.|++++|.+.+..|..+... +.++.|++.+|.+.+..|..+..
T Consensus       330 ~l~~L~~L~L~~n~l~~~~p------~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~-~~L~~L~l~~n~l~~~~p~~~~~  402 (968)
T PLN00113        330 SLPRLQVLQLWSNKFSGEIP------KNLGKHNNLTVLDLSTNNLTGEIPEGLCSS-GNLFKLILFSNSLEGEIPKSLGA  402 (968)
T ss_pred             cCCCCCEEECcCCCCcCcCC------hHHhCCCCCcEEECCCCeeEeeCChhHhCc-CCCCEEECcCCEecccCCHHHhC
Confidence            99999999999999876544      456788999999999999998888877664 78999999999999999999999


Q ss_pred             cCCCCeecccCCcccccccccccCCCCCCEEEccCCcccccCCccccCCCCCCeEeccCccccccCCCCCcCCCCCcEEE
Q 046712          352 LVNLNALGVESNQLAGTIPLAIGELKSIQILFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSNGNCQNLILLT  431 (566)
Q Consensus       352 l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~  431 (566)
                      +++|+.|++++|.+++..|..+..+++|+.|++++|.+++.++..+..+++|+.|++++|.+.+..|..+ ..++|+.|+
T Consensus       403 ~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~  481 (968)
T PLN00113        403 CRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF-GSKRLENLD  481 (968)
T ss_pred             CCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCccc-ccccceEEE
Confidence            9999999999999998889999999999999999999998888888899999999999999988777655 468999999


Q ss_pred             ccCCcceeccchhhhhhcccceEEEccCCcccccCCcCccCCCCCCEEeCccccccccCCccccCCCCCcEEeCCCCccc
Q 046712          432 TRKNKLSGIVPRQLLRIITLSVLLDLSDNLLSGHFPTKVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFT  511 (566)
Q Consensus       432 l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~~~  511 (566)
                      +++|++.+..|..+..+..+ +.|++++|.+.+..|..+..+++|++|+|++|.+++.+|..+..+++|++|+|++|.+.
T Consensus       482 ls~n~l~~~~~~~~~~l~~L-~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~  560 (968)
T PLN00113        482 LSRNQFSGAVPRKLGSLSEL-MQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLS  560 (968)
T ss_pred             CcCCccCCccChhhhhhhcc-CEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCccc
Confidence            99999999888888877666 99999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCcCCcCCCCCCEEeCCCCccccccCccccccccCceeecccCc
Q 046712          512 ISIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLLFLNMSYNH  557 (566)
Q Consensus       512 ~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~  557 (566)
                      +.+|..+..+++|+.|++++|++.+.+|.. .....+....+.+|+
T Consensus       561 ~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~-~~~~~~~~~~~~~n~  605 (968)
T PLN00113        561 GEIPKNLGNVESLVQVNISHNHLHGSLPST-GAFLAINASAVAGNI  605 (968)
T ss_pred             ccCChhHhcCcccCEEeccCCcceeeCCCc-chhcccChhhhcCCc
Confidence            999999999999999999999999888864 333344455556664

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=4.9e-38  Score=296.09  Aligned_cols=363  Identities=22%  Similarity=0.221  Sum_probs=208.1

Q ss_pred             EEEcCCCcCCCCcchhccCCCCCCEEecccccCCCCCCccccCCCCCCEEEccCCcCcccCCcccccCCcccEeeccccc
Q 046712          110 KFEASNNKLEGEIPVKISNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVAYNQ  189 (566)
Q Consensus       110 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~  189 (566)
                      +|++++|++..+.+..|.++++|+.+++..|.++ .+|.......+|+.|++.+|.|...-.+.++.++.|++|+|+.|.
T Consensus        82 ~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~  160 (873)
T KOG4194|consen   82 TLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNL  160 (873)
T ss_pred             eeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhch
Confidence            4555555555555555555555555555555555 455555555556666666666655555556666666666666665


Q ss_pred             ceecCC-cccCcccCceEecccccccccCCCCCCCCCCCCcEEEcccccccccCcccccccCCCCeeecccccccccccc
Q 046712          190 FSGMIP-PIYNISSLQYIFIHTNRFHGSVPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINRNLFSGKVSI  268 (566)
Q Consensus       190 ~~~~~~-~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~  268 (566)
                      ++.+.. .+-.-.++++|++++|.++ .+....+..+.+|..|.++.|.++.....+|.++++|+.|++..|++......
T Consensus       161 is~i~~~sfp~~~ni~~L~La~N~It-~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~l  239 (873)
T KOG4194|consen  161 ISEIPKPSFPAKVNIKKLNLASNRIT-TLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGL  239 (873)
T ss_pred             hhcccCCCCCCCCCceEEeecccccc-ccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhh
Confidence            554433 2222234444444444443 33333344556666667777766666666666667777777766666544445


Q ss_pred             cccCCCCCcEEECCCCccCCcCCCChhhhhhccCCCCCCEEEccCCeeeeecchhHhhhccCCcEEEccCCCCCCCcchh
Q 046712          269 NFSRLQNLSRLNLGENNLGTGTTNDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQISDTIPDV  348 (566)
Q Consensus       269 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~  348 (566)
                      .|+++++|+.|.+..|.+.....      +.|..+.++++|+++.|++.                         ..-..+
T Consensus       240 tFqgL~Sl~nlklqrN~I~kL~D------G~Fy~l~kme~l~L~~N~l~-------------------------~vn~g~  288 (873)
T KOG4194|consen  240 TFQGLPSLQNLKLQRNDISKLDD------GAFYGLEKMEHLNLETNRLQ-------------------------AVNEGW  288 (873)
T ss_pred             hhcCchhhhhhhhhhcCcccccC------cceeeecccceeecccchhh-------------------------hhhccc
Confidence            56666666666666666665544      44556666666666666554                         333445


Q ss_pred             hhccCCCCeecccCCcccccccccccCCCCCCEEEccCCcccccCCccccCCCCCCeEeccCccccccCCCCCcCCCCCc
Q 046712          349 IANLVNLNALGVESNQLAGTIPLAIGELKSIQILFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSNGNCQNLI  428 (566)
Q Consensus       349 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~  428 (566)
                      +.++.+|+.|++++|.|..+-++++..+++|++|+++.|.+++..+..|..+..|++|+++.|.++..-...|..+.+|+
T Consensus       289 lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~  368 (873)
T KOG4194|consen  289 LFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLH  368 (873)
T ss_pred             ccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhh
Confidence            56666777777777776666666666777777777777777666666666677777777777776655555666667777


Q ss_pred             EEEccCCcceeccchh--hhhhcccceEEEccCCcccccCCcCccCCCCCCEEeCccccccccCCccccCCCCCcEEeCC
Q 046712          429 LLTTRKNKLSGIVPRQ--LLRIITLSVLLDLSDNLLSGHFPTKVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQ  506 (566)
Q Consensus       429 ~L~l~~~~~~~~~~~~--~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~l~~~~~~~~~~~~~L~~L~L~  506 (566)
                      .|+++.|.+...+.+.  .++-.+.++.|++.+|++....-.+|.+++.|++||+.+|.+..+-+.+|..+ .|++|.+.
T Consensus       369 ~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~n  447 (873)
T KOG4194|consen  369 KLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMN  447 (873)
T ss_pred             hhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhc
Confidence            7777776665432211  11111222333444444443444455555555555555555554555555544 55555443

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=1.1e-37  Score=293.85  Aligned_cols=368  Identities=20%  Similarity=0.240  Sum_probs=299.1

Q ss_pred             CcEEEEEcCCCccccccCccCcCCCCCCEEecCCCcccccCCcccCCCCCCCEEeCCCCcCCCcCccccccCCCCcEEEc
Q 046712           34 QRVTGLDLRHQSVGGVLSPFVGNLNFLRSINLPNNSFRGKIPHEVGNLFRLQNLTLTNNYFLGKILTDLSHCSNLMKFEA  113 (566)
Q Consensus        34 ~~~~~l~l~~~~i~~~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l  113 (566)
                      ..++.|++++|.+...-+.+|.++++|+.+.+..|.++ .+|.......+|+.|+|.+|.|+......++.++.|++||+
T Consensus        78 ~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDL  156 (873)
T KOG4194|consen   78 SQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDL  156 (873)
T ss_pred             cceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhh
Confidence            56788999999999888888999999999999999887 78876666777999999999988888888888999999999


Q ss_pred             CCCcCCCCcchhccCCCCCCEEecccccCCCCCCccccCCCCCCEEEccCCcCcccCCcccccCCcccEeecccccceec
Q 046712          114 SNNKLEGEIPVKISNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVAYNQFSGM  193 (566)
Q Consensus       114 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~  193 (566)
                      +.|.++.+.-..+.+-.++++|+|++|.|+..-...|..+.+|..|.++.|+++..-+..|+++++|+.|+|..|.+.-.
T Consensus       157 SrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~iriv  236 (873)
T KOG4194|consen  157 SRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIV  236 (873)
T ss_pred             hhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeee
Confidence            99988866556677778899999999999877778888888999999999999866666788899999999999988765


Q ss_pred             CC-cccCcccCceEecccccccccCCCCCCCCCCCCcEEEcccccccccCcccccccCCCCeeecccccccccccccccC
Q 046712          194 IP-PIYNISSLQYIFIHTNRFHGSVPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINRNLFSGKVSINFSR  272 (566)
Q Consensus       194 ~~-~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~  272 (566)
                      .. .+..+++|+.|.+..|.+. .+..+.++.+.++++|++..|+++..-..++-++.+|+.|+++.|.+..+-...+..
T Consensus       237 e~ltFqgL~Sl~nlklqrN~I~-kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Wsf  315 (873)
T KOG4194|consen  237 EGLTFQGLPSLQNLKLQRNDIS-KLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSF  315 (873)
T ss_pred             hhhhhcCchhhhhhhhhhcCcc-cccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhh
Confidence            33 7778888888888888876 666777778888999999988888777778888888999999988888877888888


Q ss_pred             CCCCcEEECCCCccCCcCCCChhhhhhccCCCCCCEEEccCCeeeeecchhHhhhccCCcEEEccCCCCCCCc---chhh
Q 046712          273 LQNLSRLNLGENNLGTGTTNDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQISDTI---PDVI  349 (566)
Q Consensus       273 ~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~---~~~~  349 (566)
                      +++|+.|++++|.++..+.      ..+..+..|+.|++++|.+...-..++.. ..+|++|+|+.|.++..+   ...|
T Consensus       316 tqkL~~LdLs~N~i~~l~~------~sf~~L~~Le~LnLs~Nsi~~l~e~af~~-lssL~~LdLr~N~ls~~IEDaa~~f  388 (873)
T KOG4194|consen  316 TQKLKELDLSSNRITRLDE------GSFRVLSQLEELNLSHNSIDHLAEGAFVG-LSSLHKLDLRSNELSWCIEDAAVAF  388 (873)
T ss_pred             cccceeEeccccccccCCh------hHHHHHHHhhhhcccccchHHHHhhHHHH-hhhhhhhcCcCCeEEEEEecchhhh
Confidence            8899999999888888777      55667788888888888877444444433 378888888888776433   3356


Q ss_pred             hccCCCCeecccCCcccccccccccCCCCCCEEEccCCcccccCCccccCCCCCCeEeccCc
Q 046712          350 ANLVNLNALGVESNQLAGTIPLAIGELKSIQILFLNENFLRGTIPSSLGNLTLLTQLILEVN  411 (566)
Q Consensus       350 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~  411 (566)
                      ..+++|++|++.+|++..+.-.+|.++++|+.|++.+|.+..+.+.+|..+ .|++|.++.-
T Consensus       389 ~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSs  449 (873)
T KOG4194|consen  389 NGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNSS  449 (873)
T ss_pred             ccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhccc
Confidence            678888888888888876666678888888888888888877777888877 7888877543

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=100.00  E-value=3.7e-39  Score=290.55  Aligned_cols=479  Identities=26%  Similarity=0.408  Sum_probs=308.9

Q ss_pred             CCCCEEecCCCcccccCCcccCCCCCCCEEeCCCCcCCCcCccccccCCCCcEEEcCCCcCCCCcchhccCCCCCCEEec
Q 046712           58 NFLRSINLPNNSFRGKIPHEVGNLFRLQNLTLTNNYFLGKILTDLSHCSNLMKFEASNNKLEGEIPVKISNLLMLQILNI  137 (566)
Q Consensus        58 ~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l  137 (566)
                      ..++.+.+++|.+. .+.+.+.++..|.+|++.+|++. ..|.+++.+..+..++.+.|++. .+|.++.....|+.++.
T Consensus        45 v~l~~lils~N~l~-~l~~dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~  121 (565)
T KOG0472|consen   45 VDLQKLILSHNDLE-VLREDLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDC  121 (565)
T ss_pred             cchhhhhhccCchh-hccHhhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhc
Confidence            35666777777766 44445667777777777777765 45556667777777777777776 66777777777777777


Q ss_pred             ccccCCCCCCccccCCCCCCEEEccCCcCcccCCcccccCCcccEeecccccceecCCcccCcccCceEecccccccccC
Q 046712          138 AENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVAYNQFSGMIPPIYNISSLQYIFIHTNRFHGSV  217 (566)
Q Consensus       138 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~  217 (566)
                      +.|.+. ++++.++.+..++.++..+|.++ ..|+++..+.++..+++.+|.+....+....++.|++++...|.+. .+
T Consensus       122 s~n~~~-el~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~-tl  198 (565)
T KOG0472|consen  122 SSNELK-ELPDSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLE-TL  198 (565)
T ss_pred             ccccee-ecCchHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhh-cC
Confidence            777766 66777777777777777777776 6677777777777777777777666665545677777776666665 56


Q ss_pred             CCCCCCCCCCCcEEEcccccccccCcccccccCCCCeeecccccccccccccccCCCCCcEEECCCCccCCcCCCChhhh
Q 046712          218 PLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINRNLFSGKVSINFSRLQNLSRLNLGENNLGTGTTNDLDFI  297 (566)
Q Consensus       218 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~  297 (566)
                      |...+ .+.+|+-|++..|++. ..+ .|.+|..|+++++..|.+.-........++++..||+..|++.+.+.+     
T Consensus       199 P~~lg-~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~Pde-----  270 (565)
T KOG0472|consen  199 PPELG-GLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDE-----  270 (565)
T ss_pred             Chhhc-chhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccCchH-----
Confidence            66555 6666777777777665 333 466666677777766666544444455666666677776666665442     


Q ss_pred             hhccCCCCCCEEEccCCeeeeecchhHhhhccCCcEEEccCCCCCCCcch--------hhhccCC-CCeecccCCc---c
Q 046712          298 TLLTNCTKLEVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQISDTIPD--------VIANLVN-LNALGVESNQ---L  365 (566)
Q Consensus       298 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~--------~~~~l~~-L~~L~l~~~~---~  365 (566)
                        +..+.+|+.||+++|.++ ..|..++.+  .|+.|.+.+|.+...--+        .+..+.+ .+.=.++...   .
T Consensus       271 --~clLrsL~rLDlSNN~is-~Lp~sLgnl--hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e  345 (565)
T KOG0472|consen  271 --ICLLRSLERLDLSNNDIS-SLPYSLGNL--HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTE  345 (565)
T ss_pred             --HHHhhhhhhhcccCCccc-cCCcccccc--eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCccccc
Confidence              334456666666666666 444444443  566666666654311000        0110000 0000001000   0


Q ss_pred             cc-c-ccc---cccCCCCCCEEEccCCcccccCCccccCCC---CCCeEeccCccccccCCCCCcCCCCCcE-EEccCCc
Q 046712          366 AG-T-IPL---AIGELKSIQILFLNENFLRGTIPSSLGNLT---LLTQLILEVNNLQGKIPPSNGNCQNLIL-LTTRKNK  436 (566)
Q Consensus       366 ~~-~-~~~---~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~---~L~~L~l~~~~l~~~~~~~~~~~~~L~~-L~l~~~~  436 (566)
                      ++ . .+.   ......+.+.|++++-+++ .+|.......   -...++++.|++. ++|..+..+..+.+ +.++.|.
T Consensus       346 ~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt-~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~  423 (565)
T KOG0472|consen  346 TAMTLPSESFPDIYAIITTKILDVSDKQLT-LVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNK  423 (565)
T ss_pred             ccCCCCCCcccchhhhhhhhhhcccccccc-cCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCc
Confidence            00 0 000   1123456777888877777 4443322222   3677788888877 66666665555544 3344444


Q ss_pred             ceeccchhhhhhcccceEEEccCCcccccCCcCccCCCCCCEEeCccccccccCCccccCCCCCcEEeCCCCcccccCCc
Q 046712          437 LSGIVPRQLLRIITLSVLLDLSDNLLSGHFPTKVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTISIPS  516 (566)
Q Consensus       437 ~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~  516 (566)
                      + +.+|..+..++.+ ..|++++|.+. ..|..++.+..|+.|||+.|++. ..|..+.....++.+-.++|++....++
T Consensus       424 i-sfv~~~l~~l~kL-t~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~  499 (565)
T KOG0472|consen  424 I-SFVPLELSQLQKL-TFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPS  499 (565)
T ss_pred             c-ccchHHHHhhhcc-eeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChH
Confidence            3 3445555555544 88888888877 56666777888999999999887 7888777777788888888888866677


Q ss_pred             CCcCCCCCCEEeCCCCccccccCccccccccCceeecccCcCcccCCC
Q 046712          517 TLSSLKSITELDLSRNNLSGHIPQYLENLSFLLFLNMSYNHFEGKVPI  564 (566)
Q Consensus       517 ~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~  564 (566)
                      ++.++.+|.+||+.+|.++ .+|..+.++++|++|+++||++.  .|+
T Consensus       500 ~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr--~Pr  544 (565)
T KOG0472|consen  500 GLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR--QPR  544 (565)
T ss_pred             HhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC--CCH
Confidence            7999999999999999998 78888999999999999999987  564

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=100.00  E-value=1.7e-38  Score=286.33  Aligned_cols=499  Identities=22%  Similarity=0.315  Sum_probs=394.3

Q ss_pred             CcEEEEEcCCCccccccCccCcCCCCCCEEecCCCcccccCCcccCCCCCCCEEeCCCCcCCCcCccccccCCCCcEEEc
Q 046712           34 QRVTGLDLRHQSVGGVLSPFVGNLNFLRSINLPNNSFRGKIPHEVGNLFRLQNLTLTNNYFLGKILTDLSHCSNLMKFEA  113 (566)
Q Consensus        34 ~~~~~l~l~~~~i~~~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l  113 (566)
                      ...+.+.+++|.+... .+.+.++.-+.+|++.+|++. ..|.+++.+..++.++.++|++. ..|..+..+++|+.++.
T Consensus        45 v~l~~lils~N~l~~l-~~dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~  121 (565)
T KOG0472|consen   45 VDLQKLILSHNDLEVL-REDLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDC  121 (565)
T ss_pred             cchhhhhhccCchhhc-cHhhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhc
Confidence            5678899999998854 456889999999999999998 78889999999999999999976 67888999999999999


Q ss_pred             CCCcCCCCcchhccCCCCCCEEecccccCCCCCCccccCCCCCCEEEccCCcCcccCCcccccCCcccEeecccccceec
Q 046712          114 SNNKLEGEIPVKISNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVAYNQFSGM  193 (566)
Q Consensus       114 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~  193 (566)
                      ++|.+. .++..++.+-.|..++..+|.+. .+|..+.++.++..+++.+|.+. ..|+..-+++.|+.++...|.+.+.
T Consensus       122 s~n~~~-el~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~-~l~~~~i~m~~L~~ld~~~N~L~tl  198 (565)
T KOG0472|consen  122 SSNELK-ELPDSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLK-ALPENHIAMKRLKHLDCNSNLLETL  198 (565)
T ss_pred             ccccee-ecCchHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchh-hCCHHHHHHHHHHhcccchhhhhcC
Confidence            999988 77888999999999999999998 79999999999999999999998 5666655699999999999999999


Q ss_pred             CCcccCcccCceEecccccccccCCCCCCCCCCCCcEEEcccccccccCcccccccCCCCeeecccccccccccccccCC
Q 046712          194 IPPIYNISSLQYIFIHTNRFHGSVPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINRNLFSGKVSINFSRL  273 (566)
Q Consensus       194 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~  273 (566)
                      ++.++.+.+|..|++..|++. .+|+ +. ++..|++++++.|++.-.......+++++..|++.+|++.+ +|..+.-+
T Consensus       199 P~~lg~l~~L~~LyL~~Nki~-~lPe-f~-gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke-~Pde~clL  274 (565)
T KOG0472|consen  199 PPELGGLESLELLYLRRNKIR-FLPE-FP-GCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKE-VPDEICLL  274 (565)
T ss_pred             ChhhcchhhhHHHHhhhcccc-cCCC-CC-ccHHHHHHHhcccHHHhhHHHHhcccccceeeecccccccc-CchHHHHh
Confidence            999999999999999999887 5663 22 78999999999999886666667789999999999999974 55567778


Q ss_pred             CCCcEEECCCCccCCcCCCChhhhhhccCCCCCCEEEccCCeeeeecchhHhhh-ccCCcEEE-------ccCCCCCC--
Q 046712          274 QNLSRLNLGENNLGTGTTNDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANL-STTMTEIA-------IGSNQISD--  343 (566)
Q Consensus       274 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~-~~~L~~L~-------l~~~~~~~--  343 (566)
                      .+|.+||+++|.++..++       .+.++ .|+.|.+.||.+..+....+... ..-|++|.       ++...-..  
T Consensus       275 rsL~rLDlSNN~is~Lp~-------sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~  346 (565)
T KOG0472|consen  275 RSLERLDLSNNDISSLPY-------SLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTET  346 (565)
T ss_pred             hhhhhhcccCCccccCCc-------ccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccc
Confidence            999999999999988766       36777 89999999998763322221110 01122221       11111000  


Q ss_pred             --C-cc---hhhhccCCCCeecccCCcccccccccccCC--CCCCEEEccCCcccccCCccccCCCCCCeEeccCccccc
Q 046712          344 --T-IP---DVIANLVNLNALGVESNQLAGTIPLAIGEL--KSIQILFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQG  415 (566)
Q Consensus       344 --~-~~---~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~--~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~  415 (566)
                        . .+   ......-+.+.|++++-+++....+.|..-  .-.+.+++++|++. ++|..+..+..+.+.-+.+++..+
T Consensus       347 ~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~is  425 (565)
T KOG0472|consen  347 AMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKIS  425 (565)
T ss_pred             cCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCccc
Confidence              0 01   123345678889999988886555555432  23788999999998 788887777766665555555444


Q ss_pred             cCCCCCcCCCCCcEEEccCCcceeccchhhhhhcccceEEEccCCcccccCCcCccCCCCCCEEeCccccccccCCcccc
Q 046712          416 KIPPSNGNCQNLILLTTRKNKLSGIVPRQLLRIITLSVLLDLSDNLLSGHFPTKVGNLKNLVSLDISSNMFSGEIPTTLG  495 (566)
Q Consensus       416 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~l~~~~~~~~~  495 (566)
                      -.|..+..+++|..|++++|.+. ..|..++.+..+ +.+++++|++. ..|..+.....++.+-.++|.+....+..+.
T Consensus       426 fv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~L-q~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~  502 (565)
T KOG0472|consen  426 FVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRL-QTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLK  502 (565)
T ss_pred             cchHHHHhhhcceeeecccchhh-hcchhhhhhhhh-heecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhh
Confidence            77788889999999999988876 678888888775 99999999887 6777777777788888888999866666699


Q ss_pred             CCCCCcEEeCCCCcccccCCcCCcCCCCCCEEeCCCCccccccCccccccccCceeecccC
Q 046712          496 GCTSLEYLGMQDNSFTISIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLLFLNMSYN  556 (566)
Q Consensus       496 ~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n  556 (566)
                      ++.+|.+||+.+|.+. .+|..+++|++|++|++.||++. ..++.+-.......|..-++
T Consensus       503 nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr-~Pr~~iLmkgT~aiL~ylrd  561 (565)
T KOG0472|consen  503 NMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR-QPRHQILMKGTAAILSYLRD  561 (565)
T ss_pred             hhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC-CCHHHHhccChHHHHHHhcc
Confidence            9999999999999998 78999999999999999999998 55555444444444444443

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.98  E-value=3.5e-35  Score=291.44  Aligned_cols=470  Identities=28%  Similarity=0.336  Sum_probs=214.8

Q ss_pred             cCccCcCCCCCCEEecCCCcccccCCcccCCCCCCCEEeCCCCcCCCcCccccccCCCCcEEEcCCCcCCCCcchhccCC
Q 046712           50 LSPFVGNLNFLRSINLPNNSFRGKIPHEVGNLFRLQNLTLTNNYFLGKILTDLSHCSNLMKFEASNNKLEGEIPVKISNL  129 (566)
Q Consensus        50 ~~~~~~~l~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l  129 (566)
                      +|..+....+++.|+++.|-+.....+.+.+..+|+.|++++|.+. ..|..+..+++|+.|+++.|.+. ..|....++
T Consensus        13 ip~~i~~~~~~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i~-~vp~s~~~~   90 (1081)
T KOG0618|consen   13 IPEQILNNEALQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYIR-SVPSSCSNM   90 (1081)
T ss_pred             cchhhccHHHHHhhhccccccccCchHHhhheeeeEEeeccccccc-cCCchhhhHHHHhhcccchhhHh-hCchhhhhh
Confidence            3333444444555555555443222223333444555555555543 34444555555555555555555 444555555


Q ss_pred             CCCCEEecccccCCCCCCccccCCCCCCEEEccCCcCcccCCcccccCCcccEeecccccceecCCcccCcccCceEecc
Q 046712          130 LMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVAYNQFSGMIPPIYNISSLQYIFIH  209 (566)
Q Consensus       130 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~  209 (566)
                      .+|+++.|..|... .+|..+..+.+|++|+++.|.+. ..|..+..+..+..+..++|.........    .++++++.
T Consensus        91 ~~l~~lnL~~n~l~-~lP~~~~~lknl~~LdlS~N~f~-~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~----~ik~~~l~  164 (1081)
T KOG0618|consen   91 RNLQYLNLKNNRLQ-SLPASISELKNLQYLDLSFNHFG-PIPLVIEVLTAEEELAASNNEKIQRLGQT----SIKKLDLR  164 (1081)
T ss_pred             hcchhheeccchhh-cCchhHHhhhcccccccchhccC-CCchhHHhhhHHHHHhhhcchhhhhhccc----cchhhhhh
Confidence            56666666555555 45555555666666666665554 45555555555555555555111111111    14444444


Q ss_pred             cccccccCCCCCCCCCCCCcE-EEcccccccccCcccccccCCCCeeecccccccccccccccCCCCCcEEECCCCccCC
Q 046712          210 TNRFHGSVPLDNGVNLPNLRY-FSISGNNLTGSLQDSLSNATNLQGLEINRNLFSGKVSINFSRLQNLSRLNLGENNLGT  288 (566)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~L~~-L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  288 (566)
                      .+.+.+.++...    ..+++ |++++|.+..   ..+..+++|+.++...|.+....    ..-++++.|+.+.|.+..
T Consensus       165 ~n~l~~~~~~~i----~~l~~~ldLr~N~~~~---~dls~~~~l~~l~c~rn~ls~l~----~~g~~l~~L~a~~n~l~~  233 (1081)
T KOG0618|consen  165 LNVLGGSFLIDI----YNLTHQLDLRYNEMEV---LDLSNLANLEVLHCERNQLSELE----ISGPSLTALYADHNPLTT  233 (1081)
T ss_pred             hhhcccchhcch----hhhheeeecccchhhh---hhhhhccchhhhhhhhcccceEE----ecCcchheeeeccCccee
Confidence            444443333322    22222 5555555441   12334455555555554443211    122455555555555442


Q ss_pred             cCCCChhhhhhccCCCCCCEEEccCCeeeeecchhHhhhccCCcEEEccCCCCCCCcchhhhccCCCCeecccCCccccc
Q 046712          289 GTTNDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQISDTIPDVIANLVNLNALGVESNQLAGT  368 (566)
Q Consensus       289 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~  368 (566)
                      ....        ....+|+.++++.+++. ..|.++... .+++.+....|.++ .+|..+....+|+.|....|++. -
T Consensus       234 ~~~~--------p~p~nl~~~dis~n~l~-~lp~wi~~~-~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-y  301 (1081)
T KOG0618|consen  234 LDVH--------PVPLNLQYLDISHNNLS-NLPEWIGAC-ANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-Y  301 (1081)
T ss_pred             eccc--------cccccceeeecchhhhh-cchHHHHhc-ccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-h
Confidence            2111        11234555555555555 223333332 55555555555553 33444444555555555555554 2


Q ss_pred             ccccccCCCCCCEEEccCCcccccCCcc-ccCCC-CCCeEeccCccccccCCCCCcCCCCCcEEEccCCcceeccchhhh
Q 046712          369 IPLAIGELKSIQILFLNENFLRGTIPSS-LGNLT-LLTQLILEVNNLQGKIPPSNGNCQNLILLTTRKNKLSGIVPRQLL  446 (566)
Q Consensus       369 ~~~~~~~~~~L~~L~l~~n~~~~~~~~~-~~~~~-~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~  446 (566)
                      .|...++.++|+.|++..|.+. ..|.. +.-.. +|+.|+.+.+++.....-.=...+.|..|++.+|.+++.....+.
T Consensus       302 ip~~le~~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~  380 (1081)
T KOG0618|consen  302 IPPFLEGLKSLRTLDLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLV  380 (1081)
T ss_pred             CCCcccccceeeeeeehhcccc-ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhc
Confidence            3333444555555555555554 22221 11111 134444444443311111111234444555555554443333333


Q ss_pred             hhcccceEEEccCCcccccCCcCccCCCCCCEEeCccccccccCCccccCCCCCcEEeCCCCcccccCCcCCcCCCCCCE
Q 046712          447 RIITLSVLLDLSDNLLSGHFPTKVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTISIPSTLSSLKSITE  526 (566)
Q Consensus       447 ~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~  526 (566)
                      ....+ +.|+|++|++.......+.+++.|++|++|||.++ .+|..+..+..|++|..-+|.+. ..| .+..+++|+.
T Consensus       381 ~~~hL-KVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~  456 (1081)
T KOG0618|consen  381 NFKHL-KVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKV  456 (1081)
T ss_pred             cccce-eeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceE
Confidence            33333 55555555554333344445555555555555554 44444555555555555555544 333 4444555555


Q ss_pred             EeCCCCccccc-cCccccccccCceeecccC
Q 046712          527 LDLSRNNLSGH-IPQYLENLSFLLFLNMSYN  556 (566)
Q Consensus       527 L~l~~n~~~~~-~~~~l~~l~~L~~L~l~~n  556 (566)
                      +|++.|.++.. +|+.... +.|++||++||
T Consensus       457 lDlS~N~L~~~~l~~~~p~-p~LkyLdlSGN  486 (1081)
T KOG0618|consen  457 LDLSCNNLSEVTLPEALPS-PNLKYLDLSGN  486 (1081)
T ss_pred             EecccchhhhhhhhhhCCC-cccceeeccCC
Confidence            55555555432 2222221 45555555555

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.97  E-value=1.1e-34  Score=287.76  Aligned_cols=464  Identities=26%  Similarity=0.336  Sum_probs=376.1

Q ss_pred             EEecCCCcccccCCcccCCCCCCCEEeCCCCcCCCcCccccccCCCCcEEEcCCCcCCCCcchhccCCCCCCEEeccccc
Q 046712           62 SINLPNNSFRGKIPHEVGNLFRLQNLTLTNNYFLGKILTDLSHCSNLMKFEASNNKLEGEIPVKISNLLMLQILNIAENH  141 (566)
Q Consensus        62 ~L~ls~~~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~  141 (566)
                      .+|.+.+.+. .+|..+..-..++.|+++.|.+...+.+.+...-+|++|++++|++. ..|..+..+.+|+.|+++.|.
T Consensus         2 ~vd~s~~~l~-~ip~~i~~~~~~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~   79 (1081)
T KOG0618|consen    2 HVDASDEQLE-LIPEQILNNEALQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNY   79 (1081)
T ss_pred             CcccccccCc-ccchhhccHHHHHhhhccccccccCchHHhhheeeeEEeeccccccc-cCCchhhhHHHHhhcccchhh
Confidence            3567777776 67777766666999999999776655666667777999999999988 778889999999999999999


Q ss_pred             CCCCCCccccCCCCCCEEEccCCcCcccCCcccccCCcccEeecccccceecCCcccCcccCceEecccccccccCCCCC
Q 046712          142 LKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVAYNQFSGMIPPIYNISSLQYIFIHTNRFHGSVPLDN  221 (566)
Q Consensus       142 ~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~  221 (566)
                      +. ..|.+...+.+|+++.|.+|... .+|..+..+++|++|++++|.+...+..+..+..+..+..++|.....++.  
T Consensus        80 i~-~vp~s~~~~~~l~~lnL~~n~l~-~lP~~~~~lknl~~LdlS~N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~--  155 (1081)
T KOG0618|consen   80 IR-SVPSSCSNMRNLQYLNLKNNRLQ-SLPASISELKNLQYLDLSFNHFGPIPLVIEVLTAEEELAASNNEKIQRLGQ--  155 (1081)
T ss_pred             Hh-hCchhhhhhhcchhheeccchhh-cCchhHHhhhcccccccchhccCCCchhHHhhhHHHHHhhhcchhhhhhcc--
Confidence            98 78999999999999999999987 899999999999999999999998888888888899999988833322221  


Q ss_pred             CCCCCCCcEEEcccccccccCcccccccCCCCeeecccccccccccccccCCCCCcEEECCCCccCCcCCCChhhhhhcc
Q 046712          222 GVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINRNLFSGKVSINFSRLQNLSRLNLGENNLGTGTTNDLDFITLLT  301 (566)
Q Consensus       222 ~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~  301 (566)
                          ..++.+++..+.+...+......+..  .+++..|.+.   ...+..+.+|+.+....|.+.....          
T Consensus       156 ----~~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~---~~dls~~~~l~~l~c~rn~ls~l~~----------  216 (1081)
T KOG0618|consen  156 ----TSIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME---VLDLSNLANLEVLHCERNQLSELEI----------  216 (1081)
T ss_pred             ----ccchhhhhhhhhcccchhcchhhhhe--eeecccchhh---hhhhhhccchhhhhhhhcccceEEe----------
Confidence                22777888888776655555554444  5999988876   3346778889988888887765432          


Q ss_pred             CCCCCCEEEccCCeeeeecchhHhhhccCCcEEEccCCCCCCCcchhhhccCCCCeecccCCcccccccccccCCCCCCE
Q 046712          302 NCTKLEVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQISDTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSIQI  381 (566)
Q Consensus       302 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~  381 (566)
                      .-++|+.|+..+|.++....   ...+.++++++++.+.+++ +|.|+..+.+|+.++...|.++ ..|..+....+|+.
T Consensus       217 ~g~~l~~L~a~~n~l~~~~~---~p~p~nl~~~dis~n~l~~-lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~  291 (1081)
T KOG0618|consen  217 SGPSLTALYADHNPLTTLDV---HPVPLNLQYLDISHNNLSN-LPEWIGACANLEALNANHNRLV-ALPLRISRITSLVS  291 (1081)
T ss_pred             cCcchheeeeccCcceeecc---ccccccceeeecchhhhhc-chHHHHhcccceEecccchhHH-hhHHHHhhhhhHHH
Confidence            44789999999999883332   2234799999999999985 5699999999999999999997 66777778899999


Q ss_pred             EEccCCcccccCCccccCCCCCCeEeccCccccccCCCCCcCCC-CCcEEEccCCcceeccchhhhhhcccceEEEccCC
Q 046712          382 LFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSNGNCQ-NLILLTTRKNKLSGIVPRQLLRIITLSVLLDLSDN  460 (566)
Q Consensus       382 L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~  460 (566)
                      +.+..|.+. -+|.....+.+|++|++..|++....+..+.... +++.+..+.+++.. .|..-.+....++.|++.+|
T Consensus       292 l~~~~nel~-yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~-lp~~~e~~~~~Lq~LylanN  369 (1081)
T KOG0618|consen  292 LSAAYNELE-YIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLST-LPSYEENNHAALQELYLANN  369 (1081)
T ss_pred             HHhhhhhhh-hCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccc-cccccchhhHHHHHHHHhcC
Confidence            999999998 6676777799999999999998843333333333 36777777777663 33333334444588999999


Q ss_pred             cccccCCcCccCCCCCCEEeCccccccccCCccccCCCCCcEEeCCCCcccccCCcCCcCCCCCCEEeCCCCccccccCc
Q 046712          461 LLSGHFPTKVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTISIPSTLSSLKSITELDLSRNNLSGHIPQ  540 (566)
Q Consensus       461 ~~~~~~~~~~~~~~~L~~L~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~  540 (566)
                      .+++.....+.++.+|+.|++++|++.......+.+++.|+.|+|++|+++ .+|+...+++.|++|...+|.+. ..| 
T Consensus       370 ~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-  446 (1081)
T KOG0618|consen  370 HLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-  446 (1081)
T ss_pred             cccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-
Confidence            999999899999999999999999998555567889999999999999999 68899999999999999999998 566 


Q ss_pred             cccccccCceeecccCcCcc
Q 046712          541 YLENLSFLLFLNMSYNHFEG  560 (566)
Q Consensus       541 ~l~~l~~L~~L~l~~n~~~~  560 (566)
                      .+.+++.|+.+|++.|.++-
T Consensus       447 e~~~l~qL~~lDlS~N~L~~  466 (1081)
T KOG0618|consen  447 ELAQLPQLKVLDLSCNNLSE  466 (1081)
T ss_pred             hhhhcCcceEEecccchhhh
Confidence            77899999999999998763

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.97  E-value=6.5e-33  Score=263.82  Aligned_cols=365  Identities=24%  Similarity=0.363  Sum_probs=314.4

Q ss_pred             CCcEEEEEcCCCccc-cccCccCcCCCCCCEEecCCCcccccCCcccCCCCCCCEEeCCCCcCCCcCccccccCCCCcEE
Q 046712           33 RQRVTGLDLRHQSVG-GVLSPFVGNLNFLRSINLPNNSFRGKIPHEVGNLFRLQNLTLTNNYFLGKILTDLSHCSNLMKF  111 (566)
Q Consensus        33 ~~~~~~l~l~~~~i~-~~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L  111 (566)
                      .+-|+.+|+++|.++ +.+|.....++.+++|.+...++. .+|+.++.+.+|++|.+++|++. .....+..++.|+.+
T Consensus         6 LpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~Lp~LRsv   83 (1255)
T KOG0444|consen    6 LPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHGELSDLPRLRSV   83 (1255)
T ss_pred             cceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhhhhccchhhHHH
Confidence            377899999999998 678889999999999999999997 89999999999999999999986 355568889999999


Q ss_pred             EcCCCcCCC-CcchhccCCCCCCEEecccccCCCCCCccccCCCCCCEEEccCCcCcccCCcc-cccCCcccEeeccccc
Q 046712          112 EASNNKLEG-EIPVKISNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPST-ISHVRNLISFNVAYNQ  189 (566)
Q Consensus       112 ~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~-l~~l~~L~~L~l~~~~  189 (566)
                      ++..|++.. -+|..+.++..|.+||+|+|++. +.|..+...+++-+|++++|.|. .+|.. +-++.-|-.|++++|.
T Consensus        84 ~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~Nr  161 (1255)
T KOG0444|consen   84 IVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNR  161 (1255)
T ss_pred             hhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhccccch
Confidence            999998753 57888999999999999999999 89999999999999999999998 45554 6788999999999999


Q ss_pred             ceecCCcccCcccCceEecccccccccCCCCCCCCCCCCcEEEccccccc-ccCcccccccCCCCeeecccccccccccc
Q 046712          190 FSGMIPPIYNISSLQYIFIHTNRFHGSVPLDNGVNLPNLRYFSISGNNLT-GSLQDSLSNATNLQGLEINRNLFSGKVSI  268 (566)
Q Consensus       190 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~l~~~~~L~~L~l~~~~~~~~~~~  268 (566)
                      +...++.+..+..|++|.+++|.+......... .+.+|++|.+++++-+ ..++.++..+.+|..++++.|.+. .++.
T Consensus       162 Le~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLP-smtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPe  239 (1255)
T KOG0444|consen  162 LEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLP-SMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPE  239 (1255)
T ss_pred             hhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCc-cchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchH
Confidence            999999999999999999999977532222222 6788999999988544 457778889999999999999986 6778


Q ss_pred             cccCCCCCcEEECCCCccCCcCCCChhhhhhccCCCCCCEEEccCCeeeeecchhHhhhccCCcEEEccCCCCCCC-cch
Q 046712          269 NFSRLQNLSRLNLGENNLGTGTTNDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQISDT-IPD  347 (566)
Q Consensus       269 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~  347 (566)
                      ++..+++|++|++++|.++.....       ...-.+|+.|+++.|+++ ..|.++..+ +.|+.|.+.+|.++.. +|.
T Consensus       240 cly~l~~LrrLNLS~N~iteL~~~-------~~~W~~lEtLNlSrNQLt-~LP~avcKL-~kL~kLy~n~NkL~FeGiPS  310 (1255)
T KOG0444|consen  240 CLYKLRNLRRLNLSGNKITELNMT-------EGEWENLETLNLSRNQLT-VLPDAVCKL-TKLTKLYANNNKLTFEGIPS  310 (1255)
T ss_pred             HHhhhhhhheeccCcCceeeeecc-------HHHHhhhhhhccccchhc-cchHHHhhh-HHHHHHHhccCcccccCCcc
Confidence            889999999999999999876542       223367999999999998 788888876 8999999999987633 778


Q ss_pred             hhhccCCCCeecccCCcccccccccccCCCCCCEEEccCCcccccCCccccCCCCCCeEeccCcccc
Q 046712          348 VIANLVNLNALGVESNQLAGTIPLAIGELKSIQILFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQ  414 (566)
Q Consensus       348 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~  414 (566)
                      .++++.+|+.+...+|.+. ..|+.++.|..|+.|.+++|.+. .+|.++.-++.|+.||+..|+-.
T Consensus       311 GIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnL  375 (1255)
T KOG0444|consen  311 GIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNL  375 (1255)
T ss_pred             chhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCcCc
Confidence            8899999999999999887 88999999999999999999987 78999999999999999988643

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.96  E-value=8.1e-32  Score=256.39  Aligned_cols=321  Identities=26%  Similarity=0.454  Sum_probs=195.8

Q ss_pred             cCCCCCCEEecCCCcccc-cCCcccCCCCCCCEEeCCCCcCCCcCccccccCCCCcEEEcCCCcCCCCcchhccCCCCCC
Q 046712           55 GNLNFLRSINLPNNSFRG-KIPHEVGNLFRLQNLTLTNNYFLGKILTDLSHCSNLMKFEASNNKLEGEIPVKISNLLMLQ  133 (566)
Q Consensus        55 ~~l~~L~~L~ls~~~l~~-~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~  133 (566)
                      +-++.++-+|+++|.+++ .+|..+..+++++.|.+....+. ..|..++.+.+|++|.+.+|++. .+...++.++.|+
T Consensus         4 gVLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~Lp~LR   81 (1255)
T KOG0444|consen    4 GVLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHGELSDLPRLR   81 (1255)
T ss_pred             cccceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhhhhccchhhH
Confidence            456677778888887773 47777778888888888777765 56777777888888888887776 4555677777788


Q ss_pred             EEecccccCC-CCCCccccCCCCCCEEEccCCcCcccCCcccccCCcccEeecccccceecCCcccCcccCceEeccccc
Q 046712          134 ILNIAENHLK-GQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVAYNQFSGMIPPIYNISSLQYIFIHTNR  212 (566)
Q Consensus       134 ~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~  212 (566)
                      .+.+.+|.+. +-+|..+..+..|..||+++|++. ..|..+...+++..|++++|.+.+++.                 
T Consensus        82 sv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn-----------------  143 (1255)
T KOG0444|consen   82 SVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPN-----------------  143 (1255)
T ss_pred             HHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCc-----------------
Confidence            8877777764 346777777777777777777776 667777777777777777776654433                 


Q ss_pred             ccccCCCCCCCCCCCCcEEEcccccccccCcccccccCCCCeeecccccccccccccccCCCCCcEEECCCCccCCcCCC
Q 046712          213 FHGSVPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINRNLFSGKVSINFSRLQNLSRLNLGENNLGTGTTN  292 (566)
Q Consensus       213 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~  292 (566)
                             ..+.++..|-.|++++|.+. .++.....+..|++|.+++|.+.-.-   +                      
T Consensus       144 -------~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQ---L----------------------  190 (1255)
T KOG0444|consen  144 -------SLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQ---L----------------------  190 (1255)
T ss_pred             -------hHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHH---H----------------------
Confidence                   33334445555555555554 23333455555666666655543111   1                      


Q ss_pred             ChhhhhhccCCCCCCEEEccCCeee-eecchhHhhhccCCcEEEccCCCCCCCcchhhhccCCCCeecccCCcccccccc
Q 046712          293 DLDFITLLTNCTKLEVLDLHSNRFG-GVLPFSLANLSTTMTEIAIGSNQISDTIPDVIANLVNLNALGVESNQLAGTIPL  371 (566)
Q Consensus       293 ~~~~~~~l~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~  371 (566)
                           ..+..+.+|++|.+++.+.+ .-+|..+..+ .+|..++++.|.+. .+|+.+..+++|+.|++++|+++ .+..
T Consensus       191 -----rQLPsmtsL~vLhms~TqRTl~N~Ptsld~l-~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~it-eL~~  262 (1255)
T KOG0444|consen  191 -----RQLPSMTSLSVLHMSNTQRTLDNIPTSLDDL-HNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKIT-ELNM  262 (1255)
T ss_pred             -----hcCccchhhhhhhcccccchhhcCCCchhhh-hhhhhccccccCCC-cchHHHhhhhhhheeccCcCcee-eeec
Confidence                 11223334444444444332 1122222222 34445555555444 45666666777777777777776 3344


Q ss_pred             cccCCCCCCEEEccCCcccccCCccccCCCCCCeEeccCcccc-ccCCCCCcCCCCCcEEEccCCcc
Q 046712          372 AIGELKSIQILFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQ-GKIPPSNGNCQNLILLTTRKNKL  437 (566)
Q Consensus       372 ~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~-~~~~~~~~~~~~L~~L~l~~~~~  437 (566)
                      ..+...+|++|+++.|+++ .+|..+..++.|+.|.+.+|++. ..+|..++.+..|+.+..++|.+
T Consensus       263 ~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~L  328 (1255)
T KOG0444|consen  263 TEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKL  328 (1255)
T ss_pred             cHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhcccc
Confidence            4556667777777777776 66777777777777777777665 23444444444444444444433

>PLN03210 Resistant to P

Probab=99.91  E-value=9.1e-23  Score=226.51  Aligned_cols=381  Identities=15%  Similarity=0.171  Sum_probs=249.3

Q ss_pred             CCCCCCCCCcCCCCCCcccccccCCCCCcEEEEEcCCCcccc--ccCccCcCCCCCCEEecCCCcc------cccCCccc
Q 046712            7 DPLGVTSSWNNSINLCQWTGVTCGHRRQRVTGLDLRHQSVGG--VLSPFVGNLNFLRSINLPNNSF------RGKIPHEV   78 (566)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~i~~--~~~~~~~~l~~L~~L~ls~~~l------~~~~~~~~   78 (566)
                      +|.+....|.+.+-|-.....   ..+.+++.+.+....+..  ..+.+|.++++|+.|.+..+..      ...+|..+
T Consensus       508 ~~~~r~~l~~~~di~~vl~~~---~g~~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~  584 (1153)
T PLN03210        508 EPGEREFLVDAKDICDVLEDN---TGTKKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGF  584 (1153)
T ss_pred             CCCcceeEeCHHHHHHHHHhC---cccceeeEEEeccCccceeeecHHHHhcCccccEEEEecccccccccceeecCcch
Confidence            555555566654432222221   122566766665544432  3456789999999999976532      22466677


Q ss_pred             CCCC-CCCEEeCCCCcCCCcCccccccCCCCcEEEcCCCcCCCCcchhccCCCCCCEEecccccCCCCCCccccCCCCCC
Q 046712           79 GNLF-RLQNLTLTNNYFLGKILTDLSHCSNLMKFEASNNKLEGEIPVKISNLLMLQILNIAENHLKGQLPASIGNLSALQ  157 (566)
Q Consensus        79 ~~l~-~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~  157 (566)
                      ..++ +|+.|++.++.+. ..|..| ...+|+.|++.++++. .++..+..+++|++|+++++.....+|. ++.+++|+
T Consensus       585 ~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le  660 (1153)
T PLN03210        585 DYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLE  660 (1153)
T ss_pred             hhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCCc-cccCCccc
Confidence            6664 6999999998875 445555 5689999999999988 6777888999999999998765546664 78899999


Q ss_pred             EEEccCCcCcccCCcccccCCcccEeecccccceecCCcccCcccCceEecccccccccCCCCCCCCCCCCcEEEccccc
Q 046712          158 EIDVRGNRLGGRIPSTISHVRNLISFNVAYNQFSGMIPPIYNISSLQYIFIHTNRFHGSVPLDNGVNLPNLRYFSISGNN  237 (566)
Q Consensus       158 ~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~  237 (566)
                      +|++++|.....+|..+..+++|+.|++++|......+....+++|+.|++++|.....+|.    ...+|+.|+++++.
T Consensus       661 ~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i~l~sL~~L~Lsgc~~L~~~p~----~~~nL~~L~L~~n~  736 (1153)
T PLN03210        661 TLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGINLKSLYRLNLSGCSRLKSFPD----ISTNISWLDLDETA  736 (1153)
T ss_pred             EEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcCCCCCCCEEeCCCCCCcccccc----ccCCcCeeecCCCc
Confidence            99999987766889999999999999999986555555333788899999998865544442    24678888888887


Q ss_pred             ccccCcccccccCCCCeeeccccccccc-------ccccccCCCCCcEEECCCCccCCcCCCChhhhhhccCCCCCCEEE
Q 046712          238 LTGSLQDSLSNATNLQGLEINRNLFSGK-------VSINFSRLQNLSRLNLGENNLGTGTTNDLDFITLLTNCTKLEVLD  310 (566)
Q Consensus       238 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~-------~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~  310 (566)
                      +.. .+..+ .+++|+.|.+.++.....       .+......++|+.|++++|......+      ..+..+++|+.|+
T Consensus       737 i~~-lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP------~si~~L~~L~~L~  808 (1153)
T PLN03210        737 IEE-FPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELP------SSIQNLHKLEHLE  808 (1153)
T ss_pred             ccc-ccccc-cccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccC------hhhhCCCCCCEEE
Confidence            763 33322 466777777765432111       11112234567777777665433222      3455667777777


Q ss_pred             ccCCeeeeecchhHhhhccCCcEEEccCCCCCCCcchhhhccCCCCeecccCCcccccccccccCCCCCCEEEccCCccc
Q 046712          311 LHSNRFGGVLPFSLANLSTTMTEIAIGSNQISDTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSIQILFLNENFLR  390 (566)
Q Consensus       311 l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~  390 (566)
                      +++|......|...  ..++|+.|++++|.....+|..   .++|+.|++++|.++ ..|..+..+++|+.|++++|.-.
T Consensus       809 Ls~C~~L~~LP~~~--~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L  882 (1153)
T PLN03210        809 IENCINLETLPTGI--NLESLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNL  882 (1153)
T ss_pred             CCCCCCcCeeCCCC--CccccCEEECCCCCcccccccc---ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCc
Confidence            77764433444333  2356777777766544333332   256667777777666 44556666677777777765544


Q ss_pred             ccCCccccCCCCCCeEeccCcc
Q 046712          391 GTIPSSLGNLTLLTQLILEVNN  412 (566)
Q Consensus       391 ~~~~~~~~~~~~L~~L~l~~~~  412 (566)
                      ..++..+..+++|+.+++++|.
T Consensus       883 ~~l~~~~~~L~~L~~L~l~~C~  904 (1153)
T PLN03210        883 QRVSLNISKLKHLETVDFSDCG  904 (1153)
T ss_pred             CccCcccccccCCCeeecCCCc
Confidence            3455555666666666666664

syringae 6; Provisional

>PLN03210 Resistant to P

Probab=99.90  E-value=1.3e-21  Score=217.28  Aligned_cols=17  Identities=29%  Similarity=0.432  Sum_probs=9.3

Q ss_pred             CccCCCCCCEEeCcccc
Q 046712          469 KVGNLKNLVSLDISSNM  485 (566)
Q Consensus       469 ~~~~~~~L~~L~ls~~~  485 (566)
                      .+..+++|+.+++++|.
T Consensus       888 ~~~~L~~L~~L~l~~C~  904 (1153)
T PLN03210        888 NISKLKHLETVDFSDCG  904 (1153)
T ss_pred             ccccccCCCeeecCCCc
Confidence            34455556666666553

syringae 6; Provisional

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.89  E-value=8.9e-26  Score=204.11  Aligned_cols=286  Identities=21%  Similarity=0.245  Sum_probs=180.9

Q ss_pred             cccccCCCC---------CcEEEEEcCCCccccccCccCcCCCCCCEEecCCCcccccCCcccCCCCCCCEEeCCC-CcC
Q 046712           25 TGVTCGHRR---------QRVTGLDLRHQSVGGVLSPFVGNLNFLRSINLPNNSFRGKIPHEVGNLFRLQNLTLTN-NYF   94 (566)
Q Consensus        25 ~~~~~~~~~---------~~~~~l~l~~~~i~~~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~l~~-~~l   94 (566)
                      ..|+|+.+.         +....+.|..|.|+.+++.+|+.+++||+||+|+|.|+.+.|++|.++..|.+|.+-+ |+|
T Consensus        49 ~~VdCr~~GL~eVP~~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI  128 (498)
T KOG4237|consen   49 GIVDCRGKGLTEVPANLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKI  128 (498)
T ss_pred             ceEEccCCCcccCcccCCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCch
Confidence            347777655         6778888888888888888888888888888888888877888888888877765544 888


Q ss_pred             CCcCccccccCCCCcEEEcCCCcCCCCcchhccCCCCCCEEecccccCCCCCCccccCCCCCCEEEccCCcCc-------
Q 046712           95 LGKILTDLSHCSNLMKFEASNNKLEGEIPVKISNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLG-------  167 (566)
Q Consensus        95 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~-------  167 (566)
                      +......|+++..|+.|.+.-|++.-.....+..+++|..|.+.+|.+...-...+..+..++.+.+..|.+.       
T Consensus       129 ~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~w  208 (498)
T KOG4237|consen  129 TDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPW  208 (498)
T ss_pred             hhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccch
Confidence            8777778888888888888888877666777888888888888888887333336777788888877766631       


Q ss_pred             -----ccCCcccccCCcccEeecccccceecCCc-cc-CcccCceEecccccccccCCCCCCCCCCCCcEEEcccccccc
Q 046712          168 -----GRIPSTISHVRNLISFNVAYNQFSGMIPP-IY-NISSLQYIFIHTNRFHGSVPLDNGVNLPNLRYFSISGNNLTG  240 (566)
Q Consensus       168 -----~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-l~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  240 (566)
                           ...|..++...-.....+.+.++....+. +. ....+..=-.+.+...+..|...+..+++|++|++++|+++.
T Consensus       209 la~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~  288 (498)
T KOG4237|consen  209 LADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITR  288 (498)
T ss_pred             hhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccch
Confidence                 11112222222222222222222222210 00 101111101111222223344444566677777777777666


Q ss_pred             cCcccccccCCCCeeecccccccccccccccCCCCCcEEECCCCccCCcCCCChhhhhhccCCCCCCEEEccCCee
Q 046712          241 SLQDSLSNATNLQGLEINRNLFSGKVSINFSRLQNLSRLNLGENNLGTGTTNDLDFITLLTNCTKLEVLDLHSNRF  316 (566)
Q Consensus       241 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~  316 (566)
                      .-..+|.....+++|.+.+|++...-...|.++..|+.|++.+|+++...+      .+|.....|..|.+-.|.+
T Consensus       289 i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~------~aF~~~~~l~~l~l~~Np~  358 (498)
T KOG4237|consen  289 IEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAP------GAFQTLFSLSTLNLLSNPF  358 (498)
T ss_pred             hhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEec------ccccccceeeeeehccCcc
Confidence            666666666677777777766665555556666677777777776666555      3455556666666655544

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.87  E-value=2.7e-24  Score=194.62  Aligned_cols=399  Identities=19%  Similarity=0.211  Sum_probs=218.9

Q ss_pred             cEEEcCCCcCCCCcchhccCCCCCCEEecccccCCCCCCccccCCCCCCEEEccC-CcCcccCCcccccCCcccEeeccc
Q 046712          109 MKFEASNNKLEGEIPVKISNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRG-NRLGGRIPSTISHVRNLISFNVAY  187 (566)
Q Consensus       109 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~-~~i~~~~~~~l~~l~~L~~L~l~~  187 (566)
                      ..+++..|+|+.+.+.+|+.+++||.|||++|.|+...|++|..++.+..|-+.+ |+|+..-..+|+++..++.|.+.-
T Consensus        70 veirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNa  149 (498)
T KOG4237|consen   70 VEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNA  149 (498)
T ss_pred             eEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcCh
Confidence            4455555555555555555555555555555555545555555555554444443 455433333344455444444433


Q ss_pred             ccceecCCcccCcccCceEecccccccccCCCCCCCCCCCCcEEEcccccccccCcccccccCCCCeeeccccccccccc
Q 046712          188 NQFSGMIPPIYNISSLQYIFIHTNRFHGSVPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINRNLFSGKVS  267 (566)
Q Consensus       188 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~  267 (566)
                      |                       ++. -++...+..++++..|.+..|.+.......+..+..++.+++..|.+..   
T Consensus       150 n-----------------------~i~-Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~ic---  202 (498)
T KOG4237|consen  150 N-----------------------HIN-CIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFIC---  202 (498)
T ss_pred             h-----------------------hhc-chhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCcccc---
Confidence            3                       322 2333333466777777777777765555567777777777776655321   


Q ss_pred             ccccCCCCCcEEECCCCccCCcCCCChhhhhhccCCCCCCEEEccCCeeeeecchhHhhhccCCcEEEccCCCCCCCcc-
Q 046712          268 INFSRLQNLSRLNLGENNLGTGTTNDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQISDTIP-  346 (566)
Q Consensus       268 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-  346 (566)
                        ..+++.+... +..+.+            .+..+.......+.+.++..+-+..+......+..-..+.|......| 
T Consensus       203 --dCnL~wla~~-~a~~~i------------etsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~  267 (498)
T KOG4237|consen  203 --DCNLPWLADD-LAMNPI------------ETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPA  267 (498)
T ss_pred             --ccccchhhhH-Hhhchh------------hcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChH
Confidence              1111111110 000111            122222333333333333322222222211122111222333322333 


Q ss_pred             hhhhccCCCCeecccCCcccccccccccCCCCCCEEEccCCcccccCCccccCCCCCCeEeccCccccccCCCCCcCCCC
Q 046712          347 DVIANLVNLNALGVESNQLAGTIPLAIGELKSIQILFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSNGNCQN  426 (566)
Q Consensus       347 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~  426 (566)
                      ..|..+++|++|++++|.++++.+.+|++...+++|.+..|++...-..+|.++..|+.|++++|+|+...|.+|....+
T Consensus       268 ~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~  347 (498)
T KOG4237|consen  268 KCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFS  347 (498)
T ss_pred             HHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccce
Confidence            35788899999999999998888888889999999999999887666668888899999999999998888888888888


Q ss_pred             CcEEEccCCcceec-cchhhhhh--------------cccceEEEccCCcccc---cCCcCcc---------CCCCCCEE
Q 046712          427 LILLTTRKNKLSGI-VPRQLLRI--------------ITLSVLLDLSDNLLSG---HFPTKVG---------NLKNLVSL  479 (566)
Q Consensus       427 L~~L~l~~~~~~~~-~~~~~~~~--------------~~~l~~L~l~~~~~~~---~~~~~~~---------~~~~L~~L  479 (566)
                      |.+|.+-.|++.-. -...+...              +..++.+.+++..+.+   ..++...         .++-+.+.
T Consensus       348 l~~l~l~~Np~~CnC~l~wl~~Wlr~~~~~~~~~Cq~p~~~~~~~~~dv~~~~~~c~~~ee~~~~~s~~cP~~c~c~~tV  427 (498)
T KOG4237|consen  348 LSTLNLLSNPFNCNCRLAWLGEWLRKKSVVGNPRCQSPGFVRQIPISDVAFGDFRCGGPEELGCLTSSPCPPPCTCLDTV  427 (498)
T ss_pred             eeeeehccCcccCccchHHHHHHHhhCCCCCCCCCCCCchhccccchhccccccccCCccccCCCCCCCCCCCcchhhhh
Confidence            88888877664311 11111111              1112223333222211   0111100         11112111


Q ss_pred             -eCccccccccCCccccCCCCCcEEeCCCCcccccCCcCCcCCCCCCEEeCCCCccccccCccccccccCceeecccC
Q 046712          480 -DISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTISIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLLFLNMSYN  556 (566)
Q Consensus       480 -~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n  556 (566)
                       -.|+..+. .+|..+.  ..-.+|++.+|.++ .+|..  .+.+| .+|+++|++...--..|.++++|.+|-|++|
T Consensus       428 vRcSnk~lk-~lp~~iP--~d~telyl~gn~~~-~vp~~--~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tlilsyn  498 (498)
T KOG4237|consen  428 VRCSNKLLK-LLPRGIP--VDVTELYLDGNAIT-SVPDE--LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLILSYN  498 (498)
T ss_pred             Hhhcccchh-hcCCCCC--chhHHHhcccchhc-ccCHH--HHhhh-hcccccCceehhhcccccchhhhheeEEecC
Confidence             11222222 3333332  34577888888888 56655  56778 8999999988666678888888988888876

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.81  E-value=4.8e-19  Score=182.66  Aligned_cols=264  Identities=27%  Similarity=0.315  Sum_probs=147.9

Q ss_pred             CCcEEEcccccccccCcccccccCCCCeeecccccccccccccccCCCCCcEEECCCCccCCcCCCChhhhhhccCCCCC
Q 046712          227 NLRYFSISGNNLTGSLQDSLSNATNLQGLEINRNLFSGKVSINFSRLQNLSRLNLGENNLGTGTTNDLDFITLLTNCTKL  306 (566)
Q Consensus       227 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L  306 (566)
                      .-..|+++.+.++. +|..+.  ++|+.|.+.+|.++....    ..++|++|++++|.++..+.          ..++|
T Consensus       202 ~~~~LdLs~~~Lts-LP~~l~--~~L~~L~L~~N~Lt~LP~----lp~~Lk~LdLs~N~LtsLP~----------lp~sL  264 (788)
T PRK15387        202 GNAVLNVGESGLTT-LPDCLP--AHITTLVIPDNNLTSLPA----LPPELRTLEVSGNQLTSLPV----------LPPGL  264 (788)
T ss_pred             CCcEEEcCCCCCCc-CCcchh--cCCCEEEccCCcCCCCCC----CCCCCcEEEecCCccCcccC----------ccccc
Confidence            35567777776663 343332  367777777777664321    24677777777777665432          13567


Q ss_pred             CEEEccCCeeeeecchhHhhhccCCcEEEccCCCCCCCcchhhhccCCCCeecccCCcccccccccccCCCCCCEEEccC
Q 046712          307 EVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQISDTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSIQILFLNE  386 (566)
Q Consensus       307 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~  386 (566)
                      +.|++++|.+.. +|.    .++.|+.|++.+|.++. +|.   ..++|+.|++++|.+++. |..   ..+|+.|++++
T Consensus       265 ~~L~Ls~N~L~~-Lp~----lp~~L~~L~Ls~N~Lt~-LP~---~p~~L~~LdLS~N~L~~L-p~l---p~~L~~L~Ls~  331 (788)
T PRK15387        265 LELSIFSNPLTH-LPA----LPSGLCKLWIFGNQLTS-LPV---LPPGLQELSVSDNQLASL-PAL---PSELCKLWAYN  331 (788)
T ss_pred             ceeeccCCchhh-hhh----chhhcCEEECcCCcccc-ccc---cccccceeECCCCccccC-CCC---ccccccccccc
Confidence            777777776652 221    23566777777776663 332   235677777777776632 221   23566667777


Q ss_pred             CcccccCCccccCCCCCCeEeccCccccccCCCCCcCCCCCcEEEccCCcceeccchhhhhhcccceEEEccCCcccccC
Q 046712          387 NFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSNGNCQNLILLTTRKNKLSGIVPRQLLRIITLSVLLDLSDNLLSGHF  466 (566)
Q Consensus       387 n~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~  466 (566)
                      |.++ .+|. +  ..+|+.|++++|++. .+|..   .++|+.|++++|.+.. +|.    .+..++.|++++|.+.+ .
T Consensus       332 N~L~-~LP~-l--p~~Lq~LdLS~N~Ls-~LP~l---p~~L~~L~Ls~N~L~~-LP~----l~~~L~~LdLs~N~Lt~-L  397 (788)
T PRK15387        332 NQLT-SLPT-L--PSGLQELSVSDNQLA-SLPTL---PSELYKLWAYNNRLTS-LPA----LPSGLKELIVSGNRLTS-L  397 (788)
T ss_pred             Cccc-cccc-c--ccccceEecCCCccC-CCCCC---Ccccceehhhcccccc-Ccc----cccccceEEecCCcccC-C
Confidence            7665 3332 1  136677777777666 33322   2456666666666653 332    12234566666666653 2


Q ss_pred             CcCccCCCCCCEEeCccccccccCCccccCCCCCcEEeCCCCcccccCCcCCcCCCCCCEEeCCCCccccccCccc
Q 046712          467 PTKVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTISIPSTLSSLKSITELDLSRNNLSGHIPQYL  542 (566)
Q Consensus       467 ~~~~~~~~~L~~L~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l  542 (566)
                      +..   .++|+.|++++|.+. .+|..   ..+|+.|++++|.++ .+|+.+..+++|+.|++++|++++..+..+
T Consensus       398 P~l---~s~L~~LdLS~N~Ls-sIP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L  465 (788)
T PRK15387        398 PVL---PSELKELMVSGNRLT-SLPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQAL  465 (788)
T ss_pred             CCc---ccCCCEEEccCCcCC-CCCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHH
Confidence            221   245666666666665 34432   234566666666665 456666666666666666666665555444

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.79  E-value=1.9e-18  Score=178.26  Aligned_cols=262  Identities=22%  Similarity=0.271  Sum_probs=133.9

Q ss_pred             CceEecccccccccCCCCCCCCCCCCcEEEcccccccccCcccccccCCCCeeecccccccccccccccCCCCCcEEECC
Q 046712          203 LQYIFIHTNRFHGSVPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINRNLFSGKVSINFSRLQNLSRLNLG  282 (566)
Q Consensus       203 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  282 (566)
                      -..|+++.+.++ .+|....   ++|+.|++.+|+++.. +.   ..++|+.|++++|.++....    ..++|+.|++.
T Consensus       203 ~~~LdLs~~~Lt-sLP~~l~---~~L~~L~L~~N~Lt~L-P~---lp~~Lk~LdLs~N~LtsLP~----lp~sL~~L~Ls  270 (788)
T PRK15387        203 NAVLNVGESGLT-TLPDCLP---AHITTLVIPDNNLTSL-PA---LPPELRTLEVSGNQLTSLPV----LPPGLLELSIF  270 (788)
T ss_pred             CcEEEcCCCCCC-cCCcchh---cCCCEEEccCCcCCCC-CC---CCCCCcEEEecCCccCcccC----cccccceeecc
Confidence            445566666555 4454332   3566666666655532 21   13566666666666553321    13456666666


Q ss_pred             CCccCCcCCCChhhhhhccCCCCCCEEEccCCeeeeecchhHhhhccCCcEEEccCCCCCCCcchhhhccCCCCeecccC
Q 046712          283 ENNLGTGTTNDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQISDTIPDVIANLVNLNALGVES  362 (566)
Q Consensus       283 ~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~  362 (566)
                      +|.+...+.          .+++|+.|++++|++.. +|.    .+++|+.|++++|.+.+ +|..   ...|+.|++++
T Consensus       271 ~N~L~~Lp~----------lp~~L~~L~Ls~N~Lt~-LP~----~p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~  331 (788)
T PRK15387        271 SNPLTHLPA----------LPSGLCKLWIFGNQLTS-LPV----LPPGLQELSVSDNQLAS-LPAL---PSELCKLWAYN  331 (788)
T ss_pred             CCchhhhhh----------chhhcCEEECcCCcccc-ccc----cccccceeECCCCcccc-CCCC---ccccccccccc
Confidence            665543221          12455666666666552 221    12556666666666553 2321   23455666666


Q ss_pred             CcccccccccccCCCCCCEEEccCCcccccCCccccCCCCCCeEeccCccccccCCCCCcCCCCCcEEEccCCcceeccc
Q 046712          363 NQLAGTIPLAIGELKSIQILFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSNGNCQNLILLTTRKNKLSGIVP  442 (566)
Q Consensus       363 ~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~  442 (566)
                      |.+++ +|. +  ..+|++|++++|.++ .+|..   .++|+.|++++|.+. .+|..   ..+|+.|++++|.+.+ +|
T Consensus       332 N~L~~-LP~-l--p~~Lq~LdLS~N~Ls-~LP~l---p~~L~~L~Ls~N~L~-~LP~l---~~~L~~LdLs~N~Lt~-LP  398 (788)
T PRK15387        332 NQLTS-LPT-L--PSGLQELSVSDNQLA-SLPTL---PSELYKLWAYNNRLT-SLPAL---PSGLKELIVSGNRLTS-LP  398 (788)
T ss_pred             Ccccc-ccc-c--ccccceEecCCCccC-CCCCC---Ccccceehhhccccc-cCccc---ccccceEEecCCcccC-CC
Confidence            66653 222 1  135666666666665 33321   235556666666655 23322   2356666666666553 22


Q ss_pred             hhhhhhcccceEEEccCCcccccCCcCccCCCCCCEEeCccccccccCCccccCCCCCcEEeCCCCcccccCCcC
Q 046712          443 RQLLRIITLSVLLDLSDNLLSGHFPTKVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTISIPST  517 (566)
Q Consensus       443 ~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~  517 (566)
                      .    .+..++.|++++|.+.+ .|..   ..+|+.|++++|.+. .+|..+..+++|+.|+|++|++++..+..
T Consensus       399 ~----l~s~L~~LdLS~N~Lss-IP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~  464 (788)
T PRK15387        399 V----LPSELKELMVSGNRLTS-LPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQA  464 (788)
T ss_pred             C----cccCCCEEEccCCcCCC-CCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHH
Confidence            2    12234566666666653 2221   234566666666665 45555666666666666666665544433

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.73  E-value=2.2e-19  Score=173.96  Aligned_cols=90  Identities=24%  Similarity=0.279  Sum_probs=62.7

Q ss_pred             CccCCCCCCEEeCccccccccCCcccc-----CCCCCcEEeCCCCcccc----cCCcCCcCCCCCCEEeCCCCccccc--
Q 046712          469 KVGNLKNLVSLDISSNMFSGEIPTTLG-----GCTSLEYLGMQDNSFTI----SIPSTLSSLKSITELDLSRNNLSGH--  537 (566)
Q Consensus       469 ~~~~~~~L~~L~ls~~~l~~~~~~~~~-----~~~~L~~L~L~~n~~~~----~~~~~l~~l~~L~~L~l~~n~~~~~--  537 (566)
                      .+..+++|+.|++++|.+.+.....+.     ..+.|++|++++|.+++    .+.+.+..+++|+.+++++|.+...  
T Consensus       216 ~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~  295 (319)
T cd00116         216 TLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGA  295 (319)
T ss_pred             HhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHH
Confidence            345678888999988887743222222     24789999999998762    2344566678899999999988854  


Q ss_pred             --cCcccccc-ccCceeecccCcC
Q 046712          538 --IPQYLENL-SFLLFLNMSYNHF  558 (566)
Q Consensus       538 --~~~~l~~l-~~L~~L~l~~n~~  558 (566)
                        ..+.+... +.|+++++.+|++
T Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~~  319 (319)
T cd00116         296 QLLAESLLEPGNELESLWVKDDSF  319 (319)
T ss_pred             HHHHHHHhhcCCchhhcccCCCCC
Confidence              44444444 6888999988864

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.72  E-value=3.5e-17  Score=170.16  Aligned_cols=246  Identities=23%  Similarity=0.369  Sum_probs=153.8

Q ss_pred             CCCeeecccccccccccccccCCCCCcEEECCCCccCCcCCCChhhhhhccCCCCCCEEEccCCeeeeecchhHhhhccC
Q 046712          251 NLQGLEINRNLFSGKVSINFSRLQNLSRLNLGENNLGTGTTNDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSTT  330 (566)
Q Consensus       251 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~  330 (566)
                      +...|+++++.++..+ ..+  .+.|+.|++++|.++..+..         .+++|+.|++++|.+. .+|..+   ++.
T Consensus       179 ~~~~L~L~~~~LtsLP-~~I--p~~L~~L~Ls~N~LtsLP~~---------l~~nL~~L~Ls~N~Lt-sLP~~l---~~~  242 (754)
T PRK15370        179 NKTELRLKILGLTTIP-ACI--PEQITTLILDNNELKSLPEN---------LQGNIKTLYANSNQLT-SIPATL---PDT  242 (754)
T ss_pred             CceEEEeCCCCcCcCC-ccc--ccCCcEEEecCCCCCcCChh---------hccCCCEEECCCCccc-cCChhh---hcc
Confidence            4567777777766433 222  25688888888887765431         1247888888888776 344332   357


Q ss_pred             CcEEEccCCCCCCCcchhhhccCCCCeecccCCcccccccccccCCCCCCEEEccCCcccccCCccccCCCCCCeEeccC
Q 046712          331 MTEIAIGSNQISDTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSIQILFLNENFLRGTIPSSLGNLTLLTQLILEV  410 (566)
Q Consensus       331 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~  410 (566)
                      |+.|++++|.+. .+|..+.  .+|+.|++++|++. .+|..+.  ++|+.|++++|.++ .+|..+.  ++|+.|++++
T Consensus       243 L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt-~LP~~lp--~sL~~L~Ls~  313 (754)
T PRK15370        243 IQEMELSINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIR-TLPAHLP--SGITHLNVQS  313 (754)
T ss_pred             ccEEECcCCccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCccc-cCcccch--hhHHHHHhcC
Confidence            888888888776 3455443  46888888888777 3454443  47888888888776 3444332  4677788888


Q ss_pred             ccccccCCCCCcCCCCCcEEEccCCcceeccchhhhhhcccceEEEccCCcccccCCcCccCCCCCCEEeCccccccccC
Q 046712          411 NNLQGKIPPSNGNCQNLILLTTRKNKLSGIVPRQLLRIITLSVLLDLSDNLLSGHFPTKVGNLKNLVSLDISSNMFSGEI  490 (566)
Q Consensus       411 ~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~l~~~~  490 (566)
                      |.+.. +|..+  .++|+.|++++|.+.+ +|..+   ++.++.|++++|++. ..|..+  .++|+.|+|++|++. .+
T Consensus       314 N~Lt~-LP~~l--~~sL~~L~Ls~N~Lt~-LP~~l---~~sL~~L~Ls~N~L~-~LP~~l--p~~L~~LdLs~N~Lt-~L  382 (754)
T PRK15370        314 NSLTA-LPETL--PPGLKTLEAGENALTS-LPASL---PPELQVLDVSKNQIT-VLPETL--PPTITTLDVSRNALT-NL  382 (754)
T ss_pred             Ccccc-CCccc--cccceeccccCCcccc-CChhh---cCcccEEECCCCCCC-cCChhh--cCCcCEEECCCCcCC-CC
Confidence            77763 34332  2577777777777664 34332   244577777777666 333333  256777777777776 45


Q ss_pred             CccccCCCCCcEEeCCCCcccccCCcCCc----CCCCCCEEeCCCCccc
Q 046712          491 PTTLGGCTSLEYLGMQDNSFTISIPSTLS----SLKSITELDLSRNNLS  535 (566)
Q Consensus       491 ~~~~~~~~~L~~L~L~~n~~~~~~~~~l~----~l~~L~~L~l~~n~~~  535 (566)
                      |..+.  .+|+.|++++|.+. .+|+.+.    .++.+..|++.+|++.
T Consensus       383 P~~l~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls  428 (754)
T PRK15370        383 PENLP--AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS  428 (754)
T ss_pred             CHhHH--HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence            54443  35777777777766 4454433    3466677777777765

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.70  E-value=4.7e-18  Score=164.74  Aligned_cols=266  Identities=21%  Similarity=0.251  Sum_probs=128.5

Q ss_pred             ccCCCCeeeccccccccc----ccccccCCCCCcEEECCCCccCCcCCCChhhhhhccCCCCCCEEEccCCeeeeecchh
Q 046712          248 NATNLQGLEINRNLFSGK----VSINFSRLQNLSRLNLGENNLGTGTTNDLDFITLLTNCTKLEVLDLHSNRFGGVLPFS  323 (566)
Q Consensus       248 ~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~  323 (566)
                      .+..|+.+++.++.++..    .+..+...+.+++++++++.+.............+..+++|+.|++++|.+.+..+..
T Consensus        21 ~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~  100 (319)
T cd00116          21 KLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGV  100 (319)
T ss_pred             HHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHH
Confidence            334455555555444221    1112334444555555554443211111111223444556666666666555433333


Q ss_pred             Hhhhc--cCCcEEEccCCCCCCC----cchhhhcc-CCCCeecccCCccccc----ccccccCCCCCCEEEccCCccccc
Q 046712          324 LANLS--TTMTEIAIGSNQISDT----IPDVIANL-VNLNALGVESNQLAGT----IPLAIGELKSIQILFLNENFLRGT  392 (566)
Q Consensus       324 ~~~~~--~~L~~L~l~~~~~~~~----~~~~~~~l-~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~n~~~~~  392 (566)
                      +....  +.|++|++++|.+++.    +...+..+ ++|++|++++|.+++.    ....+..+++|++|++++|.+++.
T Consensus       101 ~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~  180 (319)
T cd00116         101 LESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDA  180 (319)
T ss_pred             HHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchH
Confidence            33321  1266666666655421    12233444 6677777777766522    223445556677777777766531


Q ss_pred             ----CCccccCCCCCCeEeccCcccccc----CCCCCcCCCCCcEEEccCCcceeccchhhhhhcccceEEEccCCcccc
Q 046712          393 ----IPSSLGNLTLLTQLILEVNNLQGK----IPPSNGNCQNLILLTTRKNKLSGIVPRQLLRIITLSVLLDLSDNLLSG  464 (566)
Q Consensus       393 ----~~~~~~~~~~L~~L~l~~~~l~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~  464 (566)
                          ++..+..+++|+.|++++|.+.+.    +...+..+++|++|++++|.+.+.....+....               
T Consensus       181 ~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~---------------  245 (319)
T cd00116         181 GIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASAL---------------  245 (319)
T ss_pred             HHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHH---------------
Confidence                222334455777777777765422    223344566677777776665542222222110               


Q ss_pred             cCCcCccCCCCCCEEeCccccccc----cCCccccCCCCCcEEeCCCCccccc----CCcCCcCC-CCCCEEeCCCCc
Q 046712          465 HFPTKVGNLKNLVSLDISSNMFSG----EIPTTLGGCTSLEYLGMQDNSFTIS----IPSTLSSL-KSITELDLSRNN  533 (566)
Q Consensus       465 ~~~~~~~~~~~L~~L~ls~~~l~~----~~~~~~~~~~~L~~L~L~~n~~~~~----~~~~l~~l-~~L~~L~l~~n~  533 (566)
                           ....+.|++|++++|.+++    .+...+..+++|+++++++|.+...    ....+... +.|+.+++.+++
T Consensus       246 -----~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (319)
T cd00116         246 -----LSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDS  318 (319)
T ss_pred             -----hccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCC
Confidence                 0023456666666665541    1122344445666666666666533    22233333 566666666554

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.69  E-value=7.6e-17  Score=167.70  Aligned_cols=292  Identities=21%  Similarity=0.301  Sum_probs=187.8

Q ss_pred             CCCcEEEcccccccccCcccccccCCCCeeecccccccccccccccCCCCCcEEECCCCccCCcCCCChhhhhhccCCCC
Q 046712          226 PNLRYFSISGNNLTGSLQDSLSNATNLQGLEINRNLFSGKVSINFSRLQNLSRLNLGENNLGTGTTNDLDFITLLTNCTK  305 (566)
Q Consensus       226 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~  305 (566)
                      .+...|+++++.++. ++..+  .+.++.|++++|.++.... .+  .++|+.|++++|.+...+..       +  .++
T Consensus       178 ~~~~~L~L~~~~Lts-LP~~I--p~~L~~L~Ls~N~LtsLP~-~l--~~nL~~L~Ls~N~LtsLP~~-------l--~~~  242 (754)
T PRK15370        178 NNKTELRLKILGLTT-IPACI--PEQITTLILDNNELKSLPE-NL--QGNIKTLYANSNQLTSIPAT-------L--PDT  242 (754)
T ss_pred             cCceEEEeCCCCcCc-CCccc--ccCCcEEEecCCCCCcCCh-hh--ccCCCEEECCCCccccCChh-------h--hcc
Confidence            456778888877764 33323  2478888888888875433 22  25788888888887754431       1  247


Q ss_pred             CCEEEccCCeeeeecchhHhhhccCCcEEEccCCCCCCCcchhhhccCCCCeecccCCcccccccccccCCCCCCEEEcc
Q 046712          306 LEVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQISDTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSIQILFLN  385 (566)
Q Consensus       306 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  385 (566)
                      |+.|++++|.+. .+|..+   +..|+.|++++|.+.. +|..+.  ++|+.|++++|+++. +|..+.  ++|+.|+++
T Consensus       243 L~~L~Ls~N~L~-~LP~~l---~s~L~~L~Ls~N~L~~-LP~~l~--~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls  312 (754)
T PRK15370        243 IQEMELSINRIT-ELPERL---PSALQSLDLFHNKISC-LPENLP--EELRYLSVYDNSIRT-LPAHLP--SGITHLNVQ  312 (754)
T ss_pred             ccEEECcCCccC-cCChhH---hCCCCEEECcCCccCc-cccccC--CCCcEEECCCCcccc-Ccccch--hhHHHHHhc
Confidence            888888888887 445443   3578888888888874 555442  578888888888874 343332  478888888


Q ss_pred             CCcccccCCccccCCCCCCeEeccCccccccCCCCCcCCCCCcEEEccCCcceeccchhhhhhcccceEEEccCCccccc
Q 046712          386 ENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSNGNCQNLILLTTRKNKLSGIVPRQLLRIITLSVLLDLSDNLLSGH  465 (566)
Q Consensus       386 ~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~  465 (566)
                      +|.++ .+|..+  .++|+.|++++|.+++ +|..+  +++|+.|++++|++. .+|..+   ++.++.|++++|.+.. 
T Consensus       313 ~N~Lt-~LP~~l--~~sL~~L~Ls~N~Lt~-LP~~l--~~sL~~L~Ls~N~L~-~LP~~l---p~~L~~LdLs~N~Lt~-  381 (754)
T PRK15370        313 SNSLT-ALPETL--PPGLKTLEAGENALTS-LPASL--PPELQVLDVSKNQIT-VLPETL---PPTITTLDVSRNALTN-  381 (754)
T ss_pred             CCccc-cCCccc--cccceeccccCCcccc-CChhh--cCcccEEECCCCCCC-cCChhh---cCCcCEEECCCCcCCC-
Confidence            88887 345433  3678888888888773 55544  368888888888876 345433   3456888888888873 


Q ss_pred             CCcCccCCCCCCEEeCccccccccCCccc----cCCCCCcEEeCCCCcccccCCcCCcCCCCCCEEeCCCCccc-cccCc
Q 046712          466 FPTKVGNLKNLVSLDISSNMFSGEIPTTL----GGCTSLEYLGMQDNSFTISIPSTLSSLKSITELDLSRNNLS-GHIPQ  540 (566)
Q Consensus       466 ~~~~~~~~~~L~~L~ls~~~l~~~~~~~~----~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~-~~~~~  540 (566)
                      .|..+.  .+|+.|++++|++. .+|..+    ..++.+..|++.+|++..      ..+++|+.| ++.+... ..++.
T Consensus       382 LP~~l~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls~------~tl~~L~~L-l~s~~~~gp~i~~  451 (754)
T PRK15370        382 LPENLP--AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFSE------RTIQNMQRL-MSSVGYQGPRVLF  451 (754)
T ss_pred             CCHhHH--HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCccH------HHHHHHHHh-hhcccccCCcccc
Confidence            444333  36888888888887 555443    335778888888888763      233444444 2333322 12333


Q ss_pred             cccccccCceeecccCcCcccCC
Q 046712          541 YLENLSFLLFLNMSYNHFEGKVP  563 (566)
Q Consensus       541 ~l~~l~~L~~L~l~~n~~~~~~p  563 (566)
                      .....+.++....-.+.+++++|
T Consensus       452 ~~~~~~~l~~~~~l~~a~~~Wl~  474 (754)
T PRK15370        452 AMGDFSIVRVTRPLHQAVQGWLT  474 (754)
T ss_pred             cccccccccccchHHHHHhccCC
Confidence            33344445544434445555555

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.65  E-value=1.6e-18  Score=139.18  Aligned_cols=167  Identities=29%  Similarity=0.494  Sum_probs=138.8

Q ss_pred             hhccCCCCeecccCCcccccccccccCCCCCCEEEccCCcccccCCccccCCCCCCeEeccCccccccCCCCCcCCCCCc
Q 046712          349 IANLVNLNALGVESNQLAGTIPLAIGELKSIQILFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSNGNCQNLI  428 (566)
Q Consensus       349 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~  428 (566)
                      +..+.+++.|.+++|+++ ..|..+..+.+|+.|++++|++. .+|..++.++.|+.|+++-|.+. ..|..|+.+|.|+
T Consensus        29 Lf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~le  105 (264)
T KOG0617|consen   29 LFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALE  105 (264)
T ss_pred             ccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhh
Confidence            445678888999999998 55667888899999999999998 78888899999999999988877 7788888889888


Q ss_pred             EEEccCCcceeccchhhhhhcccceEEEccCCcccccCCcCccCCCCCCEEeCccccccccCCccccCCCCCcEEeCCCC
Q 046712          429 LLTTRKNKLSGIVPRQLLRIITLSVLLDLSDNLLSGHFPTKVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDN  508 (566)
Q Consensus       429 ~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~l~~~~~~~~~~~~~L~~L~L~~n  508 (566)
                      .|++.+|++...                        ..|+.|..+..|+.|++++|.+. .+|..++++++|+.|.+++|
T Consensus       106 vldltynnl~e~------------------------~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdn  160 (264)
T KOG0617|consen  106 VLDLTYNNLNEN------------------------SLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDN  160 (264)
T ss_pred             hhhccccccccc------------------------cCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccC
Confidence            888888776521                        45566677788899999999988 88889999999999999999


Q ss_pred             cccccCCcCCcCCCCCCEEeCCCCccccccCcccccc
Q 046712          509 SFTISIPSTLSSLKSITELDLSRNNLSGHIPQYLENL  545 (566)
Q Consensus       509 ~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l  545 (566)
                      .+. ++|..++.++.|++|++.+|+++ ++|..+.++
T Consensus       161 dll-~lpkeig~lt~lrelhiqgnrl~-vlppel~~l  195 (264)
T KOG0617|consen  161 DLL-SLPKEIGDLTRLRELHIQGNRLT-VLPPELANL  195 (264)
T ss_pred             chh-hCcHHHHHHHHHHHHhcccceee-ecChhhhhh
Confidence            988 78899999999999999999998 555544443

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.61  E-value=1.1e-17  Score=134.40  Aligned_cols=155  Identities=21%  Similarity=0.389  Sum_probs=79.2

Q ss_pred             CCCCCCEEecCCCcccccCCcccCCCCCCCEEeCCCCcCCCcCccccccCCCCcEEEcCCCcCCCCcchhccCCCCCCEE
Q 046712           56 NLNFLRSINLPNNSFRGKIPHEVGNLFRLQNLTLTNNYFLGKILTDLSHCSNLMKFEASNNKLEGEIPVKISNLLMLQIL  135 (566)
Q Consensus        56 ~l~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L  135 (566)
                      ++.+++.|.+|+|+++ .+|.-+..+.+|+.|++++|+++ ..|..++.+++|+.|++.-|++. ..|..|+.++.|+.|
T Consensus        31 ~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levl  107 (264)
T KOG0617|consen   31 NMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVL  107 (264)
T ss_pred             chhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhh
Confidence            3344455555555554 33334455555555555555544 33444555555555555555444 445555555555555


Q ss_pred             ecccccCC-CCCCccccCCCCCCEEEccCCcCcccCCcccccCCcccEeecccccceecCCcccCcccCceEeccccccc
Q 046712          136 NIAENHLK-GQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVAYNQFSGMIPPIYNISSLQYIFIHTNRFH  214 (566)
Q Consensus       136 ~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~  214 (566)
                      |+..|.+. ..+|..|..+..|+.|++++|.+. .+|..++++++|+.|.+..|.+.+.+..++.++.|++|++.+|+++
T Consensus       108 dltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhiqgnrl~  186 (264)
T KOG0617|consen  108 DLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQGNRLT  186 (264)
T ss_pred             hccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhcccceee
Confidence            55544443 234555555555555555555544 4555555555555555555555544445555555555555555554

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.32  E-value=3.2e-13  Score=125.16  Aligned_cols=206  Identities=25%  Similarity=0.249  Sum_probs=112.1

Q ss_pred             cCCcEEEccCCCCCCCcc-hhhhccCCCCeecccCCccccc--ccccccCCCCCCEEEccCCcccccCC-ccccCCCCCC
Q 046712          329 TTMTEIAIGSNQISDTIP-DVIANLVNLNALGVESNQLAGT--IPLAIGELKSIQILFLNENFLRGTIP-SSLGNLTLLT  404 (566)
Q Consensus       329 ~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~n~~~~~~~-~~~~~~~~L~  404 (566)
                      .+|+++.+.++.+..... .....|++++.|+++.|-+...  .......+++|+.|+++.|.+..-.. ..-..++.|+
T Consensus       121 kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK  200 (505)
T KOG3207|consen  121 KKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLK  200 (505)
T ss_pred             HhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhh
Confidence            467777777776653211 3556678888888888776543  22344567788888888877642111 1112356777


Q ss_pred             eEeccCcccccc-CCCCCcCCCCCcEEEccCCcceeccchhhhhhcccceEEEccCCcccccC-CcCccCCCCCCEEeCc
Q 046712          405 QLILEVNNLQGK-IPPSNGNCQNLILLTTRKNKLSGIVPRQLLRIITLSVLLDLSDNLLSGHF-PTKVGNLKNLVSLDIS  482 (566)
Q Consensus       405 ~L~l~~~~l~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~-~~~~~~~~~L~~L~ls  482 (566)
                      .|.++.|.++-. +......+|+|+.|++..|......... .+.+..++.|+|++|++.+.. ......++.|+.|+++
T Consensus       201 ~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~-~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls  279 (505)
T KOG3207|consen  201 QLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATS-TKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLS  279 (505)
T ss_pred             eEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecch-hhhhhHHhhccccCCcccccccccccccccchhhhhcc
Confidence            777777776521 1223346777777777777422111111 122223366666666554321 1233456666666666


Q ss_pred             cccccccC-Ccc-----ccCCCCCcEEeCCCCccccc-CCcCCcCCCCCCEEeCCCCccc
Q 046712          483 SNMFSGEI-PTT-----LGGCTSLEYLGMQDNSFTIS-IPSTLSSLKSITELDLSRNNLS  535 (566)
Q Consensus       483 ~~~l~~~~-~~~-----~~~~~~L~~L~L~~n~~~~~-~~~~l~~l~~L~~L~l~~n~~~  535 (566)
                      .|.+.+.- |..     -..+++|++|++..|++.+. ....+..+++|+.|.+.+|.+.
T Consensus       280 ~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln  339 (505)
T KOG3207|consen  280 STGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN  339 (505)
T ss_pred             ccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccc
Confidence            66655221 111     23456666666666666421 1123444566666666666554

>PLN03150 hypothetical protein; Provisional

Probab=99.32  E-value=6.1e-12  Score=130.91  Aligned_cols=137  Identities=32%  Similarity=0.539  Sum_probs=101.1

Q ss_pred             cccCCCCCCCCCCCcCCCCCC----cccccccCCCC----CcEEEEEcCCCccccccCccCcCCCCCCEEecCCCccccc
Q 046712            2 KSQLQDPLGVTSSWNNSINLC----QWTGVTCGHRR----QRVTGLDLRHQSVGGVLSPFVGNLNFLRSINLPNNSFRGK   73 (566)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~----~~~~~l~l~~~~i~~~~~~~~~~l~~L~~L~ls~~~l~~~   73 (566)
                      |.++.+|.+  .+|.. +.|+    .|.|+.|....    ..++.|+|+++.+.+.+|..++++++|+.|++++|.+.+.
T Consensus       381 k~~~~~~~~--~~W~g-~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~  457 (623)
T PLN03150        381 KSSLGLPLR--FGWNG-DPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGN  457 (623)
T ss_pred             HHhcCCccc--CCCCC-CCCCCcccccccceeeccCCCCceEEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCc
Confidence            445665543  47964 4543    79999996321    2588888888888888888888888888888888888877


Q ss_pred             CCcccCCCCCCCEEeCCCCcCCCcCccccccCCCCcEEEcCCCcCCCCcchhccCC-CCCCEEeccccc
Q 046712           74 IPHEVGNLFRLQNLTLTNNYFLGKILTDLSHCSNLMKFEASNNKLEGEIPVKISNL-LMLQILNIAENH  141 (566)
Q Consensus        74 ~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l-~~L~~L~l~~~~  141 (566)
                      +|..+..+++|+.|++++|.+.+..|..+.++++|++|++++|.+++.+|..+... .++..+++.+|.
T Consensus       458 iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~  526 (623)
T PLN03150        458 IPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNA  526 (623)
T ss_pred             CChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceEEecCCc
Confidence            88888888888888888888877777777788888888888887777777666542 345556665554

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.29  E-value=2.6e-13  Score=122.26  Aligned_cols=139  Identities=17%  Similarity=0.279  Sum_probs=69.4

Q ss_pred             CCCCCCEEEccCCcccc----cCCccccCCCCCCeEeccCccccccC----CCCCcCCCCCcEEEccCCcceeccchhhh
Q 046712          375 ELKSIQILFLNENFLRG----TIPSSLGNLTLLTQLILEVNNLQGKI----PPSNGNCQNLILLTTRKNKLSGIVPRQLL  446 (566)
Q Consensus       375 ~~~~L~~L~l~~n~~~~----~~~~~~~~~~~L~~L~l~~~~l~~~~----~~~~~~~~~L~~L~l~~~~~~~~~~~~~~  446 (566)
                      .-+.|+.+...+|++-+    .+...|...+.|+.+.+..|.+....    ...+..|++|+.|++++|-++......+.
T Consensus       155 ~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~La  234 (382)
T KOG1909|consen  155 SKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALA  234 (382)
T ss_pred             CCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHH
Confidence            34456666666655532    12234445556666666666554221    12344566666666666655433222222


Q ss_pred             hhcccceEEEccCCcccccCCcCccCCCCCCEEeCccccccccCCccc-----cCCCCCcEEeCCCCccccc----CCcC
Q 046712          447 RIITLSVLLDLSDNLLSGHFPTKVGNLKNLVSLDISSNMFSGEIPTTL-----GGCTSLEYLGMQDNSFTIS----IPST  517 (566)
Q Consensus       447 ~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~l~~~~~~~~-----~~~~~L~~L~L~~n~~~~~----~~~~  517 (566)
                                           ..+..+++|++|++++|.+.......|     ...++|++|.+.+|.++..    +..+
T Consensus       235 ---------------------kaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~  293 (382)
T KOG1909|consen  235 ---------------------KALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAAC  293 (382)
T ss_pred             ---------------------HHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHH
Confidence                                 223345566666666666554333222     1245666666666655532    2223


Q ss_pred             CcCCCCCCEEeCCCCcc
Q 046712          518 LSSLKSITELDLSRNNL  534 (566)
Q Consensus       518 l~~l~~L~~L~l~~n~~  534 (566)
                      +...|.|+.|+|++|++
T Consensus       294 ~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  294 MAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             HhcchhhHHhcCCcccc
Confidence            33456666666666666

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.26  E-value=1e-12  Score=118.58  Aligned_cols=137  Identities=18%  Similarity=0.200  Sum_probs=101.3

Q ss_pred             cCCCCCcEEEccCCcceeccchh---hhhhcccceEEEccCCccccc----CCcCccCCCCCCEEeCcccccccc----C
Q 046712          422 GNCQNLILLTTRKNKLSGIVPRQ---LLRIITLSVLLDLSDNLLSGH----FPTKVGNLKNLVSLDISSNMFSGE----I  490 (566)
Q Consensus       422 ~~~~~L~~L~l~~~~~~~~~~~~---~~~~~~~l~~L~l~~~~~~~~----~~~~~~~~~~L~~L~ls~~~l~~~----~  490 (566)
                      +.-+.|++++..+|++.+.....   .++..+.++.+.++.|.+...    ...+|..+++|+.||+.+|-++..    .
T Consensus       154 ~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~L  233 (382)
T KOG1909|consen  154 ASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVAL  233 (382)
T ss_pred             CCCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHH
Confidence            45577888888888876443222   223334558888888877543    335678999999999999988733    3


Q ss_pred             CccccCCCCCcEEeCCCCcccccCCcCC-----cCCCCCCEEeCCCCccccc----cCccccccccCceeecccCcC
Q 046712          491 PTTLGGCTSLEYLGMQDNSFTISIPSTL-----SSLKSITELDLSRNNLSGH----IPQYLENLSFLLFLNMSYNHF  558 (566)
Q Consensus       491 ~~~~~~~~~L~~L~L~~n~~~~~~~~~l-----~~l~~L~~L~l~~n~~~~~----~~~~l~~l~~L~~L~l~~n~~  558 (566)
                      ...++.+++|++|++++|.+.......+     ...|.|+.|.+.+|.++..    +...+...|.|+.|+|++|.+
T Consensus       234 akaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  234 AKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             HHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence            4567778999999999998876544333     2369999999999999853    444566789999999999988

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.21  E-value=2.7e-13  Score=129.63  Aligned_cols=170  Identities=27%  Similarity=0.423  Sum_probs=80.2

Q ss_pred             CeecccCCcccccccccccCCCCCCEEEccCCcccccCCccccCCCCCCeEeccCccccccCCCCCcCCCCCcEEEccCC
Q 046712          356 NALGVESNQLAGTIPLAIGELKSIQILFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSNGNCQNLILLTTRKN  435 (566)
Q Consensus       356 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~  435 (566)
                      ...+++.|++. ++|..++.+..|+.+.++.|.+. .++..+.++..|+.++++.|+++ ..|..+..+| |+.|.+++|
T Consensus        78 ~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNN  153 (722)
T KOG0532|consen   78 VFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSNN  153 (722)
T ss_pred             hhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEecC
Confidence            44555666665 44555555566666666666665 55666666666666666666665 3444444444 444444444


Q ss_pred             cceeccchhhhhhcccceEEEccCCcccccCCcCccCCCCCCEEeCccccccccCCccccCCCCCcEEeCCCCcccccCC
Q 046712          436 KLSGIVPRQLLRIITLSVLLDLSDNLLSGHFPTKVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTISIP  515 (566)
Q Consensus       436 ~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~  515 (566)
                      +++ ..|+.+.-... +..++.+.|.+. ..+..+.++.+|+.|++..|++. ..|+.+. .-.|.+||++.|++. .+|
T Consensus       154 kl~-~lp~~ig~~~t-l~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~-~LpLi~lDfScNkis-~iP  227 (722)
T KOG0532|consen  154 KLT-SLPEEIGLLPT-LAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELC-SLPLIRLDFSCNKIS-YLP  227 (722)
T ss_pred             ccc-cCCcccccchh-HHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHh-CCceeeeecccCcee-ecc
Confidence            433 22222221111 123333333333 22223344444444444444444 3333333 233444455544444 344


Q ss_pred             cCCcCCCCCCEEeCCCCccc
Q 046712          516 STLSSLKSITELDLSRNNLS  535 (566)
Q Consensus       516 ~~l~~l~~L~~L~l~~n~~~  535 (566)
                      -+|.+|+.|++|-|.+|+++
T Consensus       228 v~fr~m~~Lq~l~LenNPLq  247 (722)
T KOG0532|consen  228 VDFRKMRHLQVLQLENNPLQ  247 (722)
T ss_pred             hhhhhhhhheeeeeccCCCC
Confidence            44444455555555444444

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.18  E-value=6.8e-12  Score=110.70  Aligned_cols=208  Identities=21%  Similarity=0.177  Sum_probs=132.8

Q ss_pred             cchhhhccCCCCeecccCCcccccccccccCCCCCCEEEccCCcccccCCccccCCCCCCeEeccCc-cccccCCCCCcC
Q 046712          345 IPDVIANLVNLNALGVESNQLAGTIPLAIGELKSIQILFLNENFLRGTIPSSLGNLTLLTQLILEVN-NLQGKIPPSNGN  423 (566)
Q Consensus       345 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~-~l~~~~~~~~~~  423 (566)
                      .|..+.-+.+|..+.++.|.-..+. .....-|.|+.+.+....+..  ...+-....+.-.--..- -..|.....+..
T Consensus       206 l~f~l~~f~~l~~~~~s~~~~~~i~-~~~~~kptl~t~~v~~s~~~~--~~~l~pe~~~~D~~~~E~~t~~G~~~~~~dT  282 (490)
T KOG1259|consen  206 LSFNLNAFRNLKTLKFSALSTENIV-DIELLKPTLQTICVHNTTIQD--VPSLLPETILADPSGSEPSTSNGSALVSADT  282 (490)
T ss_pred             cccchHHhhhhheeeeeccchhhee-ceeecCchhheeeeecccccc--cccccchhhhcCccCCCCCccCCceEEecch
Confidence            3334445566777777776543221 112233566666655544431  111111111111111100 011112223334


Q ss_pred             CCCCcEEEccCCcceeccchhhhhhcccceEEEccCCcccccCCcCccCCCCCCEEeCccccccccCCccccCCCCCcEE
Q 046712          424 CQNLILLTTRKNKLSGIVPRQLLRIITLSVLLDLSDNLLSGHFPTKVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYL  503 (566)
Q Consensus       424 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~l~~~~~~~~~~~~~L~~L  503 (566)
                      ...|+.+++++|.+.. +.+. .++.+-++.|++++|.+....  .++.+++|+.||+|+|.+. ....+-.++.++++|
T Consensus       283 Wq~LtelDLS~N~I~~-iDES-vKL~Pkir~L~lS~N~i~~v~--nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL  357 (490)
T KOG1259|consen  283 WQELTELDLSGNLITQ-IDES-VKLAPKLRRLILSQNRIRTVQ--NLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTL  357 (490)
T ss_pred             Hhhhhhccccccchhh-hhhh-hhhccceeEEeccccceeeeh--hhhhcccceEeecccchhH-hhhhhHhhhcCEeee
Confidence            5677888888887762 2333 344455588899999887433  3788999999999999998 555555578899999


Q ss_pred             eCCCCcccccCCcCCcCCCCCCEEeCCCCccccccC-ccccccccCceeecccCcCcccC
Q 046712          504 GMQDNSFTISIPSTLSSLKSITELDLSRNNLSGHIP-QYLENLSFLLFLNMSYNHFEGKV  562 (566)
Q Consensus       504 ~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~-~~l~~l~~L~~L~l~~n~~~~~~  562 (566)
                      .|++|.+.  ...++..+-+|..||+++|++..... ..++++|.|+.+.+.+|++.+..
T Consensus       358 ~La~N~iE--~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~v  415 (490)
T KOG1259|consen  358 KLAQNKIE--TLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSV  415 (490)
T ss_pred             ehhhhhHh--hhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccc
Confidence            99999886  34678889999999999999986533 47899999999999999998754

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.08  E-value=1.5e-10  Score=115.45  Aligned_cols=196  Identities=33%  Similarity=0.527  Sum_probs=110.1

Q ss_pred             EEEccCCCCCCCcchhhhccCCCCeecccCCcccccccccccCCC-CCCEEEccCCcccccCCccccCCCCCCeEeccCc
Q 046712          333 EIAIGSNQISDTIPDVIANLVNLNALGVESNQLAGTIPLAIGELK-SIQILFLNENFLRGTIPSSLGNLTLLTQLILEVN  411 (566)
Q Consensus       333 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~  411 (566)
                      .+....+.+..... .+...+.++.+++.++.++.. +......+ +|+.|++++|.+. .++..+..++.|+.|++++|
T Consensus        97 ~l~~~~~~~~~~~~-~~~~~~~l~~L~l~~n~i~~i-~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N  173 (394)
T COG4886          97 SLDLNLNRLRSNIS-ELLELTNLTSLDLDNNNITDI-PPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFN  173 (394)
T ss_pred             eeeccccccccCch-hhhcccceeEEecCCcccccC-ccccccchhhcccccccccchh-hhhhhhhccccccccccCCc
Confidence            46666666532222 234456788888888887743 33344443 7888888888876 44456677788888888888


Q ss_pred             cccccCCCCCcCCCCCcEEEccCCcceeccchhhhhhcccceEEEccCCcccccCCcCccCCCCCCEEeCccccccccCC
Q 046712          412 NLQGKIPPSNGNCQNLILLTTRKNKLSGIVPRQLLRIITLSVLLDLSDNLLSGHFPTKVGNLKNLVSLDISSNMFSGEIP  491 (566)
Q Consensus       412 ~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~l~~~~~  491 (566)
                      ++. .++......+.|+.|++++|.+... |... ..+..++.+.+++|... ..+..+..+.++..+.+.+|.+. ..+
T Consensus       174 ~l~-~l~~~~~~~~~L~~L~ls~N~i~~l-~~~~-~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~  248 (394)
T COG4886         174 DLS-DLPKLLSNLSNLNNLDLSGNKISDL-PPEI-ELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLP  248 (394)
T ss_pred             hhh-hhhhhhhhhhhhhheeccCCccccC-chhh-hhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-ecc
Confidence            777 4444444667777777777776632 2221 12222255555555322 22333444555555555555554 224


Q ss_pred             ccccCCCCCcEEeCCCCcccccCCcCCcCCCCCCEEeCCCCcccccc
Q 046712          492 TTLGGCTSLEYLGMQDNSFTISIPSTLSSLKSITELDLSRNNLSGHI  538 (566)
Q Consensus       492 ~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~  538 (566)
                      ..+..++++++|++++|.++.. +. +..+.+++.|+++++.+....
T Consensus       249 ~~~~~l~~l~~L~~s~n~i~~i-~~-~~~~~~l~~L~~s~n~~~~~~  293 (394)
T COG4886         249 ESIGNLSNLETLDLSNNQISSI-SS-LGSLTNLRELDLSGNSLSNAL  293 (394)
T ss_pred             chhccccccceecccccccccc-cc-ccccCccCEEeccCccccccc
Confidence            4455555555555555555532 22 555555555555555555333

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.07  E-value=5.7e-12  Score=120.74  Aligned_cols=170  Identities=31%  Similarity=0.497  Sum_probs=82.1

Q ss_pred             CEEEccCCeeeeecchhHhhhccCCcEEEccCCCCCCCcchhhhccCCCCeecccCCcccccccccccCCCCCCEEEccC
Q 046712          307 EVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQISDTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSIQILFLNE  386 (566)
Q Consensus       307 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~  386 (566)
                      ...+++.|++. .+|..+... ..|+.+.+..|.+. .+|..+.++..|+.++|+.|+++ .+|..++.++ |+.|-+++
T Consensus        78 ~~aDlsrNR~~-elp~~~~~f-~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sN  152 (722)
T KOG0532|consen   78 VFADLSRNRFS-ELPEEACAF-VSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSN  152 (722)
T ss_pred             hhhhccccccc-cCchHHHHH-HHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEec
Confidence            44455555554 333332221 34444444444443 24444555555555555555554 3444444442 55555555


Q ss_pred             CcccccCCccccCCCCCCeEeccCccccccCCCCCcCCCCCcEEEccCCcceeccchhhhhhcccceEEEccCCcccccC
Q 046712          387 NFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSNGNCQNLILLTTRKNKLSGIVPRQLLRIITLSVLLDLSDNLLSGHF  466 (566)
Q Consensus       387 n~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~  466 (566)
                      |+++ .+|..++..+.|..|+.+.|.+. .+|..++.+.+|+.|.++.|++. .+|..                      
T Consensus       153 Nkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~E----------------------  207 (722)
T KOG0532|consen  153 NKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEE----------------------  207 (722)
T ss_pred             Cccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHH----------------------
Confidence            5554 44444445555555555555554 34444455555555555555544 23333                      


Q ss_pred             CcCccCCCCCCEEeCccccccccCCccccCCCCCcEEeCCCCccc
Q 046712          467 PTKVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFT  511 (566)
Q Consensus       467 ~~~~~~~~~L~~L~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~~~  511 (566)
                         +..++ |..||+|+|++. .+|..|.++..|++|-|.+|.+.
T Consensus       208 ---l~~Lp-Li~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq  247 (722)
T KOG0532|consen  208 ---LCSLP-LIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ  247 (722)
T ss_pred             ---HhCCc-eeeeecccCcee-ecchhhhhhhhheeeeeccCCCC
Confidence               33333 555555555554 45555555555555555555544

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=99.05  E-value=9.2e-11  Score=124.73  Aligned_cols=105  Identities=21%  Similarity=0.321  Sum_probs=51.5

Q ss_pred             CCCEEeCCCCc--CCCcCccccccCCCCcEEEcCCCcCCCCcchhccCCCCCCEEecccccCCCCCCccccCCCCCCEEE
Q 046712           83 RLQNLTLTNNY--FLGKILTDLSHCSNLMKFEASNNKLEGEIPVKISNLLMLQILNIAENHLKGQLPASIGNLSALQEID  160 (566)
Q Consensus        83 ~L~~L~l~~~~--l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~  160 (566)
                      .|++|-+.+|.  +.......|..++.|++||+++|.--+.+|..++.+-+||+|+++++.+. .+|..+.++..|.+|+
T Consensus       546 ~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Ln  624 (889)
T KOG4658|consen  546 KLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLN  624 (889)
T ss_pred             ccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheec
Confidence            45555555543  33333333445555555555554433345555555555555555555555 4555555555555555


Q ss_pred             ccCCcCcccCCcccccCCcccEeecccc
Q 046712          161 VRGNRLGGRIPSTISHVRNLISFNVAYN  188 (566)
Q Consensus       161 l~~~~i~~~~~~~l~~l~~L~~L~l~~~  188 (566)
                      +..+......|.....+++|++|.+...
T Consensus       625 l~~~~~l~~~~~i~~~L~~Lr~L~l~~s  652 (889)
T KOG4658|consen  625 LEVTGRLESIPGILLELQSLRVLRLPRS  652 (889)
T ss_pred             cccccccccccchhhhcccccEEEeecc
Confidence            5544433233333444555555555443

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.04  E-value=3.1e-11  Score=112.21  Aligned_cols=137  Identities=20%  Similarity=0.220  Sum_probs=71.3

Q ss_pred             cCCcccEeecccccceecCC---cccCcccCceEecccccccccCCCCCCCCCCCCcEEEccccccccc-CcccccccCC
Q 046712          176 HVRNLISFNVAYNQFSGMIP---PIYNISSLQYIFIHTNRFHGSVPLDNGVNLPNLRYFSISGNNLTGS-LQDSLSNATN  251 (566)
Q Consensus       176 ~l~~L~~L~l~~~~~~~~~~---~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~l~~~~~  251 (566)
                      .+++++.|++++|-+....+   -+..+++|+.|+++.|.+...........++.|+.|.++.|+++.. ....+..+|+
T Consensus       144 ~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPs  223 (505)
T KOG3207|consen  144 ILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPS  223 (505)
T ss_pred             hCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCc
Confidence            34444444444443333222   1224444444444444433222222222466777777777776632 2223456777


Q ss_pred             CCeeecccccccccccccccCCCCCcEEECCCCccCCcCCCChhhhhhccCCCCCCEEEccCCeee
Q 046712          252 LQGLEINRNLFSGKVSINFSRLQNLSRLNLGENNLGTGTTNDLDFITLLTNCTKLEVLDLHSNRFG  317 (566)
Q Consensus       252 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~  317 (566)
                      |+.|.+..|...........-++.|+.|++++|++.+....     .....++.|..|+++.+.+.
T Consensus       224 l~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~-----~~~~~l~~L~~Lnls~tgi~  284 (505)
T KOG3207|consen  224 LEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQG-----YKVGTLPGLNQLNLSSTGIA  284 (505)
T ss_pred             HHHhhhhcccccceecchhhhhhHHhhccccCCcccccccc-----cccccccchhhhhccccCcc
Confidence            77777777752222222334456677777777776554321     33556677777777766654

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=99.02  E-value=3.1e-10  Score=120.80  Aligned_cols=149  Identities=18%  Similarity=0.243  Sum_probs=103.4

Q ss_pred             CcEEEEEcCCCccccccCccCcCCCCCCEEecCCCc--ccccCCcccCCCCCCCEEeCCCCcCCCcCccccccCCCCcEE
Q 046712           34 QRVTGLDLRHQSVGGVLSPFVGNLNFLRSINLPNNS--FRGKIPHEVGNLFRLQNLTLTNNYFLGKILTDLSHCSNLMKF  111 (566)
Q Consensus        34 ~~~~~l~l~~~~i~~~~~~~~~~l~~L~~L~ls~~~--l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L  111 (566)
                      ..+++.++-++.+....-  =..++.|+.|-+.+|.  +.....+.|..++.|++||+++|.--+.+|..++.+-+|++|
T Consensus       523 ~~~rr~s~~~~~~~~~~~--~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL  600 (889)
T KOG4658|consen  523 NSVRRMSLMNNKIEHIAG--SSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYL  600 (889)
T ss_pred             hheeEEEEeccchhhccC--CCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcc
Confidence            456777777766543221  1344578888888875  443344447778889999998886666788888888899999


Q ss_pred             EcCCCcCCCCcchhccCCCCCCEEecccccCCCCCCccccCCCCCCEEEccCCcCc--ccCCcccccCCcccEeec
Q 046712          112 EASNNKLEGEIPVKISNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLG--GRIPSTISHVRNLISFNV  185 (566)
Q Consensus       112 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~--~~~~~~l~~l~~L~~L~l  185 (566)
                      +++++.+. .+|..+++++.|.+|++..+......+.....+.+|++|.+......  ...-..+..+.+|+.+..
T Consensus       601 ~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~  675 (889)
T KOG4658|consen  601 DLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSI  675 (889)
T ss_pred             cccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhhee
Confidence            99988888 88888889999999998887765455666677889999888665422  112223344455555544

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.01  E-value=4.2e-10  Score=95.52  Aligned_cols=104  Identities=27%  Similarity=0.376  Sum_probs=22.0

Q ss_pred             CCCEEecCCCcccccCCcccC-CCCCCCEEeCCCCcCCCcCccccccCCCCcEEEcCCCcCCCCcchhc-cCCCCCCEEe
Q 046712           59 FLRSINLPNNSFRGKIPHEVG-NLFRLQNLTLTNNYFLGKILTDLSHCSNLMKFEASNNKLEGEIPVKI-SNLLMLQILN  136 (566)
Q Consensus        59 ~L~~L~ls~~~l~~~~~~~~~-~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l-~~l~~L~~L~  136 (566)
                      .+++|++++|.|+. +. .++ .+.+|+.|++++|.++..  ..+..+++|++|++++|+++.. ...+ ..+++|+.|+
T Consensus        20 ~~~~L~L~~n~I~~-Ie-~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~i-~~~l~~~lp~L~~L~   94 (175)
T PF14580_consen   20 KLRELNLRGNQIST-IE-NLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISSI-SEGLDKNLPNLQELY   94 (175)
T ss_dssp             ------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S--CHHHHHH-TT--EEE
T ss_pred             cccccccccccccc-cc-chhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCcc-ccchHHhCCcCCEEE
Confidence            34555555554442 11 222 344455555555544321  2344445555555555554422 1122 2344555555


Q ss_pred             cccccCCC-CCCccccCCCCCCEEEccCCcCc
Q 046712          137 IAENHLKG-QLPASIGNLSALQEIDVRGNRLG  167 (566)
Q Consensus       137 l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~i~  167 (566)
                      +++|++.+ .-...+..+++|++|++.+|.++
T Consensus        95 L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~  126 (175)
T PF14580_consen   95 LSNNKISDLNELEPLSSLPKLRVLSLEGNPVC  126 (175)
T ss_dssp             -TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred             CcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence            55544431 11123344445555555555443

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.00  E-value=2.9e-10  Score=96.43  Aligned_cols=126  Identities=21%  Similarity=0.306  Sum_probs=47.0

Q ss_pred             cCCCCCCCEEeCCCCcCCCcCccccc-cCCCCcEEEcCCCcCCCCcchhccCCCCCCEEecccccCCCCCCccc-cCCCC
Q 046712           78 VGNLFRLQNLTLTNNYFLGKILTDLS-HCSNLMKFEASNNKLEGEIPVKISNLLMLQILNIAENHLKGQLPASI-GNLSA  155 (566)
Q Consensus        78 ~~~l~~L~~L~l~~~~l~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~-~~l~~  155 (566)
                      +.+..++++|++.+|.|+..  +.+. .+.+|++|++++|.++. + ..+..++.|++|++++|.+. .+...+ ..+++
T Consensus        15 ~~n~~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~-l-~~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~   89 (175)
T PF14580_consen   15 YNNPVKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITK-L-EGLPGLPRLKTLDLSNNRIS-SISEGLDKNLPN   89 (175)
T ss_dssp             -----------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS----S-CHHHHHH-TT
T ss_pred             cccccccccccccccccccc--cchhhhhcCCCEEECCCCCCcc-c-cCccChhhhhhcccCCCCCC-ccccchHHhCCc
Confidence            55666789999999988643  3455 57889999999998884 3 35778899999999999988 454444 46889


Q ss_pred             CCEEEccCCcCccc-CCcccccCCcccEeecccccceecCC----cccCcccCceEec
Q 046712          156 LQEIDVRGNRLGGR-IPSTISHVRNLISFNVAYNQFSGMIP----PIYNISSLQYIFI  208 (566)
Q Consensus       156 L~~L~l~~~~i~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~----~l~~~~~L~~L~l  208 (566)
                      |++|++++|+|... ....++.+++|+.|++.+|++.....    .+..+|+|+.|+-
T Consensus        90 L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~  147 (175)
T PF14580_consen   90 LQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG  147 (175)
T ss_dssp             --EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred             CCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence            99999999988632 22456778888888888888865433    3445566666543

>PLN03150 hypothetical protein; Provisional

Probab=98.96  E-value=1.3e-09  Score=113.55  Aligned_cols=112  Identities=36%  Similarity=0.501  Sum_probs=90.3

Q ss_pred             ceEEEccCCcccccCCcCccCCCCCCEEeCccccccccCCccccCCCCCcEEeCCCCcccccCCcCCcCCCCCCEEeCCC
Q 046712          452 SVLLDLSDNLLSGHFPTKVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTISIPSTLSSLKSITELDLSR  531 (566)
Q Consensus       452 l~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~  531 (566)
                      ++.|+|++|.+.+..+..+..+++|+.|++++|.+.+.+|..+..+++|+.|+|++|.+.+.+|+.+..+++|+.|+|++
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~  499 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG  499 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence            36778888888888888888888888888888888878888888888888888888888888888888888888888888


Q ss_pred             CccccccCcccccc-ccCceeecccCcCcccCC
Q 046712          532 NNLSGHIPQYLENL-SFLLFLNMSYNHFEGKVP  563 (566)
Q Consensus       532 n~~~~~~~~~l~~l-~~L~~L~l~~n~~~~~~p  563 (566)
                      |.+.+.+|..+... .++..+++.+|+.....|
T Consensus       500 N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p  532 (623)
T PLN03150        500 NSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP  532 (623)
T ss_pred             CcccccCChHHhhccccCceEEecCCccccCCC
Confidence            88888888877653 466778888876554444

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.95  E-value=1.2e-09  Score=109.00  Aligned_cols=197  Identities=29%  Similarity=0.444  Sum_probs=110.0

Q ss_pred             EEeCCCCcCCCcCccccccCCCCcEEEcCCCcCCCCcchhccCCC-CCCEEecccccCCCCCCccccCCCCCCEEEccCC
Q 046712           86 NLTLTNNYFLGKILTDLSHCSNLMKFEASNNKLEGEIPVKISNLL-MLQILNIAENHLKGQLPASIGNLSALQEIDVRGN  164 (566)
Q Consensus        86 ~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~  164 (566)
                      .++...+.+. .....+..++.++.+++.++.++ .++......+ +|+.|++++|.+. .++..++.+++|+.|++++|
T Consensus        97 ~l~~~~~~~~-~~~~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N  173 (394)
T COG4886          97 SLDLNLNRLR-SNISELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFN  173 (394)
T ss_pred             eeeccccccc-cCchhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCc
Confidence            4555555442 12223334455666666666665 4444444553 6666666666665 44455666666666666666


Q ss_pred             cCcccCCcccccCCcccEeecccccceecCCcccCcccCceEecccccccccCCCCCCCCCCCCcEEEcccccccccCcc
Q 046712          165 RLGGRIPSTISHVRNLISFNVAYNQFSGMIPPIYNISSLQYIFIHTNRFHGSVPLDNGVNLPNLRYFSISGNNLTGSLQD  244 (566)
Q Consensus       165 ~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~  244 (566)
                      .+. .+|......++|+.|++++|.+......+.....|+++.++++... ..+.... .+.++..+.+..+++.. ...
T Consensus       174 ~l~-~l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~-~~~~l~~l~l~~n~~~~-~~~  249 (394)
T COG4886         174 DLS-DLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSII-ELLSSLS-NLKNLSGLELSNNKLED-LPE  249 (394)
T ss_pred             hhh-hhhhhhhhhhhhhheeccCCccccCchhhhhhhhhhhhhhcCCcce-ecchhhh-hcccccccccCCceeee-ccc
Confidence            665 4444444556666666666666555544444455666666666322 1122121 45556666666665542 234


Q ss_pred             cccccCCCCeeecccccccccccccccCCCCCcEEECCCCccCCcCC
Q 046712          245 SLSNATNLQGLEINRNLFSGKVSINFSRLQNLSRLNLGENNLGTGTT  291 (566)
Q Consensus       245 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~  291 (566)
                      .+..++.++.+++++|.+.....  +....+++.++++++.+....+
T Consensus       250 ~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~~~  294 (394)
T COG4886         250 SIGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNALP  294 (394)
T ss_pred             hhccccccceecccccccccccc--ccccCccCEEeccCccccccch
Confidence            45566667777777777665444  5666777777777776654433

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.92  E-value=2.5e-10  Score=100.97  Aligned_cols=129  Identities=24%  Similarity=0.227  Sum_probs=67.2

Q ss_pred             CCCCEEEccCCcccccCCccccCCCCCCeEeccCccccccCCCCCcCCCCCcEEEccCCcceeccchhhhhhcccceEEE
Q 046712          377 KSIQILFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSNGNCQNLILLTTRKNKLSGIVPRQLLRIITLSVLLD  456 (566)
Q Consensus       377 ~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~  456 (566)
                      +.|+++++++|.|+ .+..+..-.|.++.|+++.|.+....  .+..+++|..|++++|.+...  ..+......++.|.
T Consensus       284 q~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v~--nLa~L~~L~~LDLS~N~Ls~~--~Gwh~KLGNIKtL~  358 (490)
T KOG1259|consen  284 QELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTVQ--NLAELPQLQLLDLSGNLLAEC--VGWHLKLGNIKTLK  358 (490)
T ss_pred             hhhhhccccccchh-hhhhhhhhccceeEEeccccceeeeh--hhhhcccceEeecccchhHhh--hhhHhhhcCEeeee
Confidence            34555555555554 34444444555555555555544221  144455555555555554422  11111222235556


Q ss_pred             ccCCcccccCCcCccCCCCCCEEeCccccccccC-CccccCCCCCcEEeCCCCcccc
Q 046712          457 LSDNLLSGHFPTKVGNLKNLVSLDISSNMFSGEI-PTTLGGCTSLEYLGMQDNSFTI  512 (566)
Q Consensus       457 l~~~~~~~~~~~~~~~~~~L~~L~ls~~~l~~~~-~~~~~~~~~L~~L~L~~n~~~~  512 (566)
                      ++.|.+.+.  .++.++-+|..||+++|++.... ...++++|-|+.+.|.+|++..
T Consensus       359 La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~  413 (490)
T KOG1259|consen  359 LAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG  413 (490)
T ss_pred             hhhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccc
Confidence            666555322  24556667777777777765221 2356777777777777777663

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.92  E-value=8.6e-10  Score=76.77  Aligned_cols=59  Identities=37%  Similarity=0.554  Sum_probs=33.3

Q ss_pred             CCcEEeCCCCcccccCCcCCcCCCCCCEEeCCCCccccccCccccccccCceeecccCc
Q 046712          499 SLEYLGMQDNSFTISIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLLFLNMSYNH  557 (566)
Q Consensus       499 ~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~  557 (566)
                      +|++|++++|.++...++.|..+++|++|++++|.+....|..|..+++|+.|++++|+
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence            45555555555554444555555555555555555555555555555555555555554

...

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.89  E-value=1.3e-09  Score=75.87  Aligned_cols=61  Identities=38%  Similarity=0.526  Sum_probs=50.4

Q ss_pred             CCCCEEeCccccccccCCccccCCCCCcEEeCCCCcccccCCcCCcCCCCCCEEeCCCCcc
Q 046712          474 KNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTISIPSTLSSLKSITELDLSRNNL  534 (566)
Q Consensus       474 ~~L~~L~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~  534 (566)
                      |+|++|++++|++....+..|.++++|++|++++|.++...+++|.++++|++|++++|++
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            5688888888888866667888888888888888888877778888888888888888875

...

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.73  E-value=1.8e-09  Score=107.70  Aligned_cols=202  Identities=26%  Similarity=0.270  Sum_probs=120.4

Q ss_pred             hhccCCCCeecccCCcccccccccccCCCCCCEEEccCCcccccCCccccCCCCCCeEeccCccccccCC-CCCcCCCCC
Q 046712          349 IANLVNLNALGVESNQLAGTIPLAIGELKSIQILFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIP-PSNGNCQNL  427 (566)
Q Consensus       349 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~~L  427 (566)
                      +..+++|++|++++|.|+...  .+..++.|+.|++++|.+..  ...+..++.|+.+++++|.+....+ . ...+.++
T Consensus       114 l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~l~~N~i~~--~~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l  188 (414)
T KOG0531|consen  114 LSSLVNLQVLDLSFNKITKLE--GLSTLTLLKELNLSGNLISD--ISGLESLKSLKLLDLSYNRIVDIENDE-LSELISL  188 (414)
T ss_pred             hhhhhcchheecccccccccc--chhhccchhhheeccCcchh--ccCCccchhhhcccCCcchhhhhhhhh-hhhccch
Confidence            445666777777777666432  24455557777777777652  2344446667777777776653322 1 3566667


Q ss_pred             cEEEccCCcceeccchhhhhhcccceEEEccCCcccccCCcCccCCC--CCCEEeCccccccccCCccccCCCCCcEEeC
Q 046712          428 ILLTTRKNKLSGIVPRQLLRIITLSVLLDLSDNLLSGHFPTKVGNLK--NLVSLDISSNMFSGEIPTTLGGCTSLEYLGM  505 (566)
Q Consensus       428 ~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~--~L~~L~ls~~~l~~~~~~~~~~~~~L~~L~L  505 (566)
                      +.+++.+|.+............   ..+++..+.+.....  +....  +|+.+++++|++. ..+..+..+..++.|++
T Consensus       189 ~~l~l~~n~i~~i~~~~~~~~l---~~~~l~~n~i~~~~~--l~~~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~  262 (414)
T KOG0531|consen  189 EELDLGGNSIREIEGLDLLKKL---VLLSLLDNKISKLEG--LNELVMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDL  262 (414)
T ss_pred             HHHhccCCchhcccchHHHHHH---HHhhcccccceeccC--cccchhHHHHHHhcccCccc-cccccccccccccccch
Confidence            7777777766533222221111   222555555542221  12222  3788888888887 44456777788888888


Q ss_pred             CCCcccccCCcCCcCCCCCCEEeCCCCcccc---ccCcc-ccccccCceeecccCcCcccCC
Q 046712          506 QDNSFTISIPSTLSSLKSITELDLSRNNLSG---HIPQY-LENLSFLLFLNMSYNHFEGKVP  563 (566)
Q Consensus       506 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~---~~~~~-l~~l~~L~~L~l~~n~~~~~~p  563 (566)
                      .+|.+..  .+.+...+.+..+....+.+..   ..... ....+.++.+.+.+|++....+
T Consensus       263 ~~n~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (414)
T KOG0531|consen  263 SSNRISN--LEGLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIRKISS  322 (414)
T ss_pred             hhccccc--cccccccchHHHhccCcchhcchhhhhccccccccccccccccccCccccccc
Confidence            8887763  2456666777777777777652   22222 4566778888888887776554

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.64  E-value=2.8e-09  Score=106.35  Aligned_cols=240  Identities=28%  Similarity=0.306  Sum_probs=146.6

Q ss_pred             CCCCEEEccCCeeeeecchhHhhhccCCcEEEccCCCCCCCcchhhhccCCCCeecccCCcccccccccccCCCCCCEEE
Q 046712          304 TKLEVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQISDTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSIQILF  383 (566)
Q Consensus       304 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~  383 (566)
                      +.++.++............ . .....++.+.+..+.+.. ....+..+.+|..+++.+|.+..... .+..+++|+.|+
T Consensus        49 ~~~~~~~~~~~~~~~~~~~-~-~~l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i~~-~l~~~~~L~~L~  124 (414)
T KOG0531|consen   49 SDLEEIDLIFNLDGSDEDL-V-ESLTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKIEN-LLSSLVNLQVLD  124 (414)
T ss_pred             chhhhhcchhccccchhhh-H-HHhHhHHhhccchhhhhh-hhcccccccceeeeeccccchhhccc-chhhhhcchhee
Confidence            4556666655533322111 0 222566666677776653 22235667888888888888874432 266788888888


Q ss_pred             ccCCcccccCCccccCCCCCCeEeccCccccccCCCCCcCCCCCcEEEccCCcceeccchhhhhhcccceEEEccCCccc
Q 046712          384 LNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSNGNCQNLILLTTRKNKLSGIVPRQLLRIITLSVLLDLSDNLLS  463 (566)
Q Consensus       384 l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~  463 (566)
                      +++|.|++.  ..+..++.|+.|++.+|.+...  ..+..++.|+.+++++|++....+.....+..+ +.+++.+|.+.
T Consensus       125 ls~N~I~~i--~~l~~l~~L~~L~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l-~~l~l~~n~i~  199 (414)
T KOG0531|consen  125 LSFNKITKL--EGLSTLTLLKELNLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDELSELISL-EELDLGGNSIR  199 (414)
T ss_pred             ccccccccc--cchhhccchhhheeccCcchhc--cCCccchhhhcccCCcchhhhhhhhhhhhccch-HHHhccCCchh
Confidence            888888743  3455667788888888887632  234457888888888888775444102222222 55677777665


Q ss_pred             ccCCcCccCCCCCCEEeCccccccccCCccccCCCC--CcEEeCCCCcccccCCcCCcCCCCCCEEeCCCCccccccCcc
Q 046712          464 GHFPTKVGNLKNLVSLDISSNMFSGEIPTTLGGCTS--LEYLGMQDNSFTISIPSTLSSLKSITELDLSRNNLSGHIPQY  541 (566)
Q Consensus       464 ~~~~~~~~~~~~L~~L~ls~~~l~~~~~~~~~~~~~--L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~  541 (566)
                      ..  ..+..+..+..+++..|.+....+  +..+..  |+.+++++|.+. ..++++..++.+..|++..+++...  +.
T Consensus       200 ~i--~~~~~~~~l~~~~l~~n~i~~~~~--l~~~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~~--~~  272 (414)
T KOG0531|consen  200 EI--EGLDLLKKLVLLSLLDNKISKLEG--LNELVMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISNL--EG  272 (414)
T ss_pred             cc--cchHHHHHHHHhhcccccceeccC--cccchhHHHHHHhcccCccc-cccccccccccccccchhhcccccc--cc
Confidence            32  223334445555777776653221  222333  788888888877 3446777788888888888877633  33


Q ss_pred             ccccccCceeecccCcCc
Q 046712          542 LENLSFLLFLNMSYNHFE  559 (566)
Q Consensus       542 l~~l~~L~~L~l~~n~~~  559 (566)
                      +...+.+..+...++++.
T Consensus       273 ~~~~~~~~~~~~~~~~~~  290 (414)
T KOG0531|consen  273 LERLPKLSELWLNDNKLA  290 (414)
T ss_pred             ccccchHHHhccCcchhc
Confidence            455556666666666554

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.62  E-value=1.7e-09  Score=95.79  Aligned_cols=158  Identities=19%  Similarity=0.280  Sum_probs=93.9

Q ss_pred             CCcEEEcccccccc-cCcccccccCCCCeeecccccccccccccccCCCCCcEEECCCCc-cCCcCCCChhhhhhccCCC
Q 046712          227 NLRYFSISGNNLTG-SLQDSLSNATNLQGLEINRNLFSGKVSINFSRLQNLSRLNLGENN-LGTGTTNDLDFITLLTNCT  304 (566)
Q Consensus       227 ~L~~L~l~~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~l~~~~  304 (566)
                      .|+.++++...++. .....+++|.+|+.+.+.++++.+.+...+..-.+|++++++.+. ++..     .....+.+|+
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n-----~~~ll~~scs  260 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTEN-----ALQLLLSSCS  260 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchh-----HHHHHHHhhh
Confidence            47777777776653 233456778888888888888877777777777888888888763 2221     1224467788


Q ss_pred             CCCEEEccCCeee-eecchhHhhhccCCcEEEccCCCCC---CCcchhhhccCCCCeecccCCcc-cccccccccCCCCC
Q 046712          305 KLEVLDLHSNRFG-GVLPFSLANLSTTMTEIAIGSNQIS---DTIPDVIANLVNLNALGVESNQL-AGTIPLAIGELKSI  379 (566)
Q Consensus       305 ~L~~L~l~~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~---~~~~~~~~~l~~L~~L~l~~~~~-~~~~~~~~~~~~~L  379 (566)
                      .|..|+++.|... ........+..++++.|+++++.-.   ..+....+.+|+|.+||+++|.. +......|..++.|
T Consensus       261 ~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L  340 (419)
T KOG2120|consen  261 RLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYL  340 (419)
T ss_pred             hHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchh
Confidence            8888888887554 2233344455566777777665321   11222234566666666666533 21112233455555


Q ss_pred             CEEEccCCcc
Q 046712          380 QILFLNENFL  389 (566)
Q Consensus       380 ~~L~l~~n~~  389 (566)
                      +++.++.|..
T Consensus       341 ~~lSlsRCY~  350 (419)
T KOG2120|consen  341 QHLSLSRCYD  350 (419)
T ss_pred             eeeehhhhcC
Confidence            6666655553

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.57  E-value=9.5e-10  Score=97.32  Aligned_cols=183  Identities=20%  Similarity=0.184  Sum_probs=98.5

Q ss_pred             cCCcEEEccCCCCCCC-cchhhhccCCCCeecccCCcccccccccccCCCCCCEEEccCCc-ccc-cCCccccCCCCCCe
Q 046712          329 TTMTEIAIGSNQISDT-IPDVIANLVNLNALGVESNQLAGTIPLAIGELKSIQILFLNENF-LRG-TIPSSLGNLTLLTQ  405 (566)
Q Consensus       329 ~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~-~~~-~~~~~~~~~~~L~~  405 (566)
                      +.++.+++++..++.. ....+..|.+|+.|.+.++++.+.....+++..+|+.++++.|. ++. .....+.+++.|.+
T Consensus       185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~  264 (419)
T KOG2120|consen  185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE  264 (419)
T ss_pred             hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence            3567777777666521 33345667777777777777766555566666777777777654 221 11224556667777


Q ss_pred             EeccCccccccCCCCCc--CCCCCcEEEccCCcceeccchhhhhhcccceEEEccCCcccccCCcCccCCCCCCEEeCcc
Q 046712          406 LILEVNNLQGKIPPSNG--NCQNLILLTTRKNKLSGIVPRQLLRIITLSVLLDLSDNLLSGHFPTKVGNLKNLVSLDISS  483 (566)
Q Consensus       406 L~l~~~~l~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~  483 (566)
                      |+++-|.+.........  --+.|+.|+++++.-.                  +..+.+.    .--..+|+|.+||+|+
T Consensus       265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrn------------------l~~sh~~----tL~~rcp~l~~LDLSD  322 (419)
T KOG2120|consen  265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRN------------------LQKSHLS----TLVRRCPNLVHLDLSD  322 (419)
T ss_pred             cCchHhhccchhhhHHHhhhchhhhhhhhhhhHhh------------------hhhhHHH----HHHHhCCceeeecccc
Confidence            77766665432211110  1234455555444311                  0000110    1113667777777777


Q ss_pred             ccc-cccCCccccCCCCCcEEeCCCCcccccCCcC---CcCCCCCCEEeCCCCccc
Q 046712          484 NMF-SGEIPTTLGGCTSLEYLGMQDNSFTISIPST---LSSLKSITELDLSRNNLS  535 (566)
Q Consensus       484 ~~l-~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~---l~~l~~L~~L~l~~n~~~  535 (566)
                      |.. +......|-+++.|++|.++.|...  +|+.   +...|+|.+|++-||--.
T Consensus       323 ~v~l~~~~~~~~~kf~~L~~lSlsRCY~i--~p~~~~~l~s~psl~yLdv~g~vsd  376 (419)
T KOG2120|consen  323 SVMLKNDCFQEFFKFNYLQHLSLSRCYDI--IPETLLELNSKPSLVYLDVFGCVSD  376 (419)
T ss_pred             ccccCchHHHHHHhcchheeeehhhhcCC--ChHHeeeeccCcceEEEEeccccCc
Confidence            643 2222234556677777777777532  4443   344577777777776443

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.55  E-value=1.2e-09  Score=108.13  Aligned_cols=126  Identities=30%  Similarity=0.402  Sum_probs=96.4

Q ss_pred             CCCcEEEccCCcceeccchhhhhhcccceEEEccCCcccccCCcCccCCCCCCEEeCccccccccCCc-cccCCCCCcEE
Q 046712          425 QNLILLTTRKNKLSGIVPRQLLRIITLSVLLDLSDNLLSGHFPTKVGNLKNLVSLDISSNMFSGEIPT-TLGGCTSLEYL  503 (566)
Q Consensus       425 ~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~l~~~~~~-~~~~~~~L~~L  503 (566)
                      -.|...+++.|.+. .+...+ ++.+.++.|+|++|++....  .+..++.|++|||++|.+. .+|. ...+|. |+.|
T Consensus       164 n~L~~a~fsyN~L~-~mD~SL-qll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~-L~~L  237 (1096)
T KOG1859|consen  164 NKLATASFSYNRLV-LMDESL-QLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLR-HVPQLSMVGCK-LQLL  237 (1096)
T ss_pred             hhHhhhhcchhhHH-hHHHHH-HHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhc-cccccchhhhh-heee
Confidence            35667777888876 233333 34444599999999998554  6788999999999999998 4443 344566 9999


Q ss_pred             eCCCCcccccCCcCCcCCCCCCEEeCCCCccccc-cCccccccccCceeecccCcC
Q 046712          504 GMQDNSFTISIPSTLSSLKSITELDLSRNNLSGH-IPQYLENLSFLLFLNMSYNHF  558 (566)
Q Consensus       504 ~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~-~~~~l~~l~~L~~L~l~~n~~  558 (566)
                      .|++|.++.  ..++.++.+|+.||+++|-+.+. -.+-+..+.+|.+|.|.||++
T Consensus       238 ~lrnN~l~t--L~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl  291 (1096)
T KOG1859|consen  238 NLRNNALTT--LRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL  291 (1096)
T ss_pred             eecccHHHh--hhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence            999999883  36789999999999999987642 224467788999999999954

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.39  E-value=6.3e-08  Score=86.03  Aligned_cols=228  Identities=16%  Similarity=0.144  Sum_probs=116.6

Q ss_pred             CCCEEeCCCCcCCCcCcc-ccc-cCCCCcEEEcCCCcCCC--CcchhccCCCCCCEEecccccCCCCCCccccCCCCCCE
Q 046712           83 RLQNLTLTNNYFLGKILT-DLS-HCSNLMKFEASNNKLEG--EIPVKISNLLMLQILNIAENHLKGQLPASIGNLSALQE  158 (566)
Q Consensus        83 ~L~~L~l~~~~l~~~~~~-~~~-~l~~L~~L~l~~~~~~~--~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~  158 (566)
                      -++.|.+.++.+...... .|+ .++.++.+|+.+|++++  .+...+.++|.|++|+++.|.+...+...-....+|+.
T Consensus        46 a~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~  125 (418)
T KOG2982|consen   46 ALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRV  125 (418)
T ss_pred             chhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEE
Confidence            444566666655432221 132 36777778888877764  33444567788888888877766332222235567777


Q ss_pred             EEccCCcCccc-CCcccccCCcccEeecccccceec---CCccc-CcccCceEecccccccccC-CCCCCCCCCCCcEEE
Q 046712          159 IDVRGNRLGGR-IPSTISHVRNLISFNVAYNQFSGM---IPPIY-NISSLQYIFIHTNRFHGSV-PLDNGVNLPNLRYFS  232 (566)
Q Consensus       159 L~l~~~~i~~~-~~~~l~~l~~L~~L~l~~~~~~~~---~~~l~-~~~~L~~L~l~~~~~~~~~-~~~~~~~~~~L~~L~  232 (566)
                      |-+.+..+... ....+..+|.++.|.++.|.+...   ..... .-+.+.+++.-+|....-. .-....-+|++..+-
T Consensus       126 lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~  205 (418)
T KOG2982|consen  126 LVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVF  205 (418)
T ss_pred             EEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchhee
Confidence            77777666422 223345667777777776633211   11111 1123344444333221000 000111356677666


Q ss_pred             ccccccccc-CcccccccCCCCeeeccccccccccc-ccccCCCCCcEEECCCCccCCcCCCChhhhhhccCCCCCCEEE
Q 046712          233 ISGNNLTGS-LQDSLSNATNLQGLEINRNLFSGKVS-INFSRLQNLSRLNLGENNLGTGTTNDLDFITLLTNCTKLEVLD  310 (566)
Q Consensus       233 l~~~~~~~~-~~~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~  310 (566)
                      +..|.++.. ........|.+..|++..+.+..... .++.+++.|..|.+..+++.+.......-.-.++.+++++.|+
T Consensus       206 v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLN  285 (418)
T KOG2982|consen  206 VCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLN  285 (418)
T ss_pred             eecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEec
Confidence            666655532 22334455666667776666654432 3466677777777777766543222111112234455555543

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.36  E-value=6.2e-08  Score=86.04  Aligned_cols=83  Identities=16%  Similarity=0.263  Sum_probs=40.0

Q ss_pred             CCCCCCEEecccccCCC--CCCccccCCCCCCEEEccCCcCcccCCccc-ccCCcccEeecccccceecC--CcccCccc
Q 046712          128 NLLMLQILNIAENHLKG--QLPASIGNLSALQEIDVRGNRLGGRIPSTI-SHVRNLISFNVAYNQFSGMI--PPIYNISS  202 (566)
Q Consensus       128 ~l~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l-~~l~~L~~L~l~~~~~~~~~--~~l~~~~~  202 (566)
                      .+..++.+|+..|.+++  ++...+.++|.|+.|+++.|.+...+ ..+ ....+|+.|-+.+..+....  +.+..++.
T Consensus        69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I-~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~  147 (418)
T KOG2982|consen   69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDI-KSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPK  147 (418)
T ss_pred             HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCcc-ccCcccccceEEEEEcCCCCChhhhhhhhhcchh
Confidence            45566666666666652  22233446666666666666654221 111 23345566655555443211  13334444


Q ss_pred             CceEecccc
Q 046712          203 LQYIFIHTN  211 (566)
Q Consensus       203 L~~L~l~~~  211 (566)
                      +++|+++.|
T Consensus       148 vtelHmS~N  156 (418)
T KOG2982|consen  148 VTELHMSDN  156 (418)
T ss_pred             hhhhhhccc
Confidence            555544444

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=98.32  E-value=1.1e-08  Score=94.95  Aligned_cols=235  Identities=19%  Similarity=0.147  Sum_probs=125.6

Q ss_pred             CcccCceEecccc-cccccCCCCCCCCCCCCcEEEcccc-cccccCccc-ccccCCCCeeecccccccccc--cccccCC
Q 046712          199 NISSLQYIFIHTN-RFHGSVPLDNGVNLPNLRYFSISGN-NLTGSLQDS-LSNATNLQGLEINRNLFSGKV--SINFSRL  273 (566)
Q Consensus       199 ~~~~L~~L~l~~~-~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~-l~~~~~L~~L~l~~~~~~~~~--~~~~~~~  273 (566)
                      .|+.++++++..| .++..........+++|++|++++| ++++..... ..++..++.+...+|.-.+..  ...-..+
T Consensus       188 ~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~  267 (483)
T KOG4341|consen  188 YCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYC  267 (483)
T ss_pred             hcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccC
Confidence            4445555555443 2222222223336777777777777 333322222 234455555555554322111  1111344


Q ss_pred             CCCcEEECCCCccCCcCCCChhhhhhccCCCCCCEEEccCCee-eeecchhHhhhccCCcEEEccCCC-CCCCcch-hhh
Q 046712          274 QNLSRLNLGENNLGTGTTNDLDFITLLTNCTKLEVLDLHSNRF-GGVLPFSLANLSTTMTEIAIGSNQ-ISDTIPD-VIA  350 (566)
Q Consensus       274 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~-~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~-~~~  350 (566)
                      ..+.++++..|...+    +.+....-..+..|++++.+++.. .+....++.....+|+.+.+..|+ ++..--. .=+
T Consensus       268 ~~i~~lnl~~c~~lT----D~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~r  343 (483)
T KOG4341|consen  268 LEILKLNLQHCNQLT----DEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGR  343 (483)
T ss_pred             hHhhccchhhhcccc----chHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhc
Confidence            556666655553221    112223445677788888877643 333334455555678888888776 3322111 123


Q ss_pred             ccCCCCeecccCCccc--ccccccccCCCCCCEEEccCCccc-cc----CCccccCCCCCCeEeccCcccc-ccCCCCCc
Q 046712          351 NLVNLNALGVESNQLA--GTIPLAIGELKSIQILFLNENFLR-GT----IPSSLGNLTLLTQLILEVNNLQ-GKIPPSNG  422 (566)
Q Consensus       351 ~l~~L~~L~l~~~~~~--~~~~~~~~~~~~L~~L~l~~n~~~-~~----~~~~~~~~~~L~~L~l~~~~l~-~~~~~~~~  422 (566)
                      +++.|+.+++.++...  +.+...-.+|+.|+.+.+++|... +.    ....-..+..|+.+.+++++.. ...-..+.
T Consensus       344 n~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~  423 (483)
T KOG4341|consen  344 NCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLS  423 (483)
T ss_pred             CChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHh
Confidence            5678888888877542  123333457788888888888743 21    1122344567888888888754 23334556


Q ss_pred             CCCCCcEEEccCCcc
Q 046712          423 NCQNLILLTTRKNKL  437 (566)
Q Consensus       423 ~~~~L~~L~l~~~~~  437 (566)
                      .|++|+.+++.++.-
T Consensus       424 ~c~~Leri~l~~~q~  438 (483)
T KOG4341|consen  424 ICRNLERIELIDCQD  438 (483)
T ss_pred             hCcccceeeeechhh
Confidence            777888877777653

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=98.32  E-value=2.1e-08  Score=93.29  Aligned_cols=281  Identities=18%  Similarity=0.096  Sum_probs=151.0

Q ss_pred             CCCCeeeccccccccc--ccccccCCCCCcEEECCCCccCCcCCCChhhhhhccCCCCCCEEEccCC-eeeeecchhHhh
Q 046712          250 TNLQGLEINRNLFSGK--VSINFSRLQNLSRLNLGENNLGTGTTNDLDFITLLTNCTKLEVLDLHSN-RFGGVLPFSLAN  326 (566)
Q Consensus       250 ~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~~~~~~~~~  326 (566)
                      ..|+.+.+.++.-...  .......++++++|.+.++...+    +......-..|++|+++++..| .+++.....+..
T Consensus       138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iT----d~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~  213 (483)
T KOG4341|consen  138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKIT----DSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAE  213 (483)
T ss_pred             cccccccccccccCCcchhhHHhhhCCchhhhhhhcceecc----HHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHH
Confidence            3577888877653221  12223577888888887776222    2223344567888888888885 444444445556


Q ss_pred             hccCCcEEEccCCC-CCCC-cchhhhccCCCCeecccCCccccc--ccccccCCCCCCEEEccCCcc-cccCC-ccccCC
Q 046712          327 LSTTMTEIAIGSNQ-ISDT-IPDVIANLVNLNALGVESNQLAGT--IPLAIGELKSIQILFLNENFL-RGTIP-SSLGNL  400 (566)
Q Consensus       327 ~~~~L~~L~l~~~~-~~~~-~~~~~~~l~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~n~~-~~~~~-~~~~~~  400 (566)
                      ..++|+++.+++|. +.+. +....+.+..++++...+|.-.+.  +...-+.+.-+..+++.+|.. ++... ..-..+
T Consensus       214 gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c  293 (483)
T KOG4341|consen  214 GCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGC  293 (483)
T ss_pred             hhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhh
Confidence            66788888888875 3332 223445666677777777643211  111223445566666656542 22211 122346


Q ss_pred             CCCCeEeccCcccc-ccCCCC-CcCCCCCcEEEccCCc-ceeccchhhhhhcccceEEEccCCccccc--CCcCccCCCC
Q 046712          401 TLLTQLILEVNNLQ-GKIPPS-NGNCQNLILLTTRKNK-LSGIVPRQLLRIITLSVLLDLSDNLLSGH--FPTKVGNLKN  475 (566)
Q Consensus       401 ~~L~~L~l~~~~l~-~~~~~~-~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~l~~L~l~~~~~~~~--~~~~~~~~~~  475 (566)
                      ..|+.|..+++.-. ...-.. -.++++|+.+.+..|+ +++.-...+....+.++.+++..|.....  ....-.+++.
T Consensus       294 ~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~  373 (483)
T KOG4341|consen  294 HALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPR  373 (483)
T ss_pred             hHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCch
Confidence            77788887776432 111111 2356777777777775 23222333444444456666666533211  1222235666


Q ss_pred             CCEEeCccccccccC-----CccccCCCCCcEEeCCCCccc-ccCCcCCcCCCCCCEEeCCCCcc
Q 046712          476 LVSLDISSNMFSGEI-----PTTLGGCTSLEYLGMQDNSFT-ISIPSTLSSLKSITELDLSRNNL  534 (566)
Q Consensus       476 L~~L~ls~~~l~~~~-----~~~~~~~~~L~~L~L~~n~~~-~~~~~~l~~l~~L~~L~l~~n~~  534 (566)
                      |+.|.++.|......     ...-..+..|+.+.+++|+.+ +...+-+..+++|+.+++.+|+-
T Consensus       374 lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~  438 (483)
T KOG4341|consen  374 LRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQD  438 (483)
T ss_pred             hccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhh
Confidence            777777666443111     112234556666777666533 23444555666676666666644

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.26  E-value=1.1e-07  Score=83.51  Aligned_cols=146  Identities=21%  Similarity=0.246  Sum_probs=73.3

Q ss_pred             cccCcccCceEecccccccccCCCCCC---CCCCCCcEEEcccccccccCcc-------------cccccCCCCeeeccc
Q 046712          196 PIYNISSLQYIFIHTNRFHGSVPLDNG---VNLPNLRYFSISGNNLTGSLQD-------------SLSNATNLQGLEINR  259 (566)
Q Consensus       196 ~l~~~~~L~~L~l~~~~~~~~~~~~~~---~~~~~L~~L~l~~~~~~~~~~~-------------~l~~~~~L~~L~l~~  259 (566)
                      .+..|++++..+++.|.+....|....   ..-..|++|.+++|.+.-....             ..+.-|.|+.+...+
T Consensus        87 aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgr  166 (388)
T COG5238          87 ALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGR  166 (388)
T ss_pred             HHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEecc
Confidence            344566666666666655443333211   2345666676666654321111             122346677777777


Q ss_pred             cccccccccc----ccCCCCCcEEECCCCccCCcCCCChhhhhhccCCCCCCEEEccCCeeeeecchhHhhhc---cCCc
Q 046712          260 NLFSGKVSIN----FSRLQNLSRLNLGENNLGTGTTNDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLS---TTMT  332 (566)
Q Consensus       260 ~~~~~~~~~~----~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~---~~L~  332 (566)
                      |++.......    +..-..|+.+.+..|.+...+...+.+. .+..+.+|+.|++.+|-++......++...   +.|+
T Consensus       167 NRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~-gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lr  245 (388)
T COG5238         167 NRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFL-GLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLR  245 (388)
T ss_pred             chhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHH-HHHHhCcceeeeccccchhhhhHHHHHHHhcccchhh
Confidence            7664332211    2233567777777777665444333332 234556777777777766543333322211   2345


Q ss_pred             EEEccCCCCC
Q 046712          333 EIAIGSNQIS  342 (566)
Q Consensus       333 ~L~l~~~~~~  342 (566)
                      +|.+.+|-++
T Consensus       246 EL~lnDClls  255 (388)
T COG5238         246 ELRLNDCLLS  255 (388)
T ss_pred             hccccchhhc
Confidence            5555555444

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.25  E-value=3.7e-07  Score=80.18  Aligned_cols=137  Identities=17%  Similarity=0.148  Sum_probs=79.5

Q ss_pred             CCCCCcEEEccCCcceeccch---hhhhhcccceEEEccCCcccccCC-----cCccCCCCCCEEeCcccccccc----C
Q 046712          423 NCQNLILLTTRKNKLSGIVPR---QLLRIITLSVLLDLSDNLLSGHFP-----TKVGNLKNLVSLDISSNMFSGE----I  490 (566)
Q Consensus       423 ~~~~L~~L~l~~~~~~~~~~~---~~~~~~~~l~~L~l~~~~~~~~~~-----~~~~~~~~L~~L~ls~~~l~~~----~  490 (566)
                      .-|.|+++.+..|++..-...   ...+....++.+.+..|.+.....     ..+..+.+|+.|||.+|-++..    .
T Consensus       155 ~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~L  234 (388)
T COG5238         155 DKPKLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYL  234 (388)
T ss_pred             cCCCceEEEeccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHH
Confidence            456677777777776532211   112222345677777776653322     2234677888888888876632    2


Q ss_pred             CccccCCCCCcEEeCCCCcccccCCcC----Cc--CCCCCCEEeCCCCccccc-cC-----cc-ccccccCceeecccCc
Q 046712          491 PTTLGGCTSLEYLGMQDNSFTISIPST----LS--SLKSITELDLSRNNLSGH-IP-----QY-LENLSFLLFLNMSYNH  557 (566)
Q Consensus       491 ~~~~~~~~~L~~L~L~~n~~~~~~~~~----l~--~l~~L~~L~l~~n~~~~~-~~-----~~-l~~l~~L~~L~l~~n~  557 (566)
                      ...+...+.|+.|.+.+|-+.......    |.  ..|+|..|...+|.+.+. +.     +. =.++|-|..|.+.||.
T Consensus       235 a~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr  314 (388)
T COG5238         235 ADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNR  314 (388)
T ss_pred             HHHhcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCc
Confidence            234455566888888888666433222    21  247888888888866532 11     11 1356777777788877


Q ss_pred             Cc
Q 046712          558 FE  559 (566)
Q Consensus       558 ~~  559 (566)
                      +.
T Consensus       315 ~~  316 (388)
T COG5238         315 IK  316 (388)
T ss_pred             ch
Confidence            64

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.15  E-value=3e-08  Score=98.45  Aligned_cols=180  Identities=21%  Similarity=0.263  Sum_probs=91.0

Q ss_pred             CccCcCCCCCCEEecCCCcccccCCcccCCC-CCCCEEeCCCCc--CCCcCc---ccccc---CCCCcEEEcCCCcCCCC
Q 046712           51 SPFVGNLNFLRSINLPNNSFRGKIPHEVGNL-FRLQNLTLTNNY--FLGKIL---TDLSH---CSNLMKFEASNNKLEGE  121 (566)
Q Consensus        51 ~~~~~~l~~L~~L~ls~~~l~~~~~~~~~~l-~~L~~L~l~~~~--l~~~~~---~~~~~---l~~L~~L~l~~~~~~~~  121 (566)
                      |-.+..++.|++|.+.+|.+...  ..+..+ .+|++|.-.+.-  +.....   .+|.+   -..|.+.+.++|.+. .
T Consensus       102 pi~ifpF~sLr~LElrg~~L~~~--~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~-~  178 (1096)
T KOG1859|consen  102 PISIFPFRSLRVLELRGCDLSTA--KGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYNRLV-L  178 (1096)
T ss_pred             CceeccccceeeEEecCcchhhh--hhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccchhhhhHhhhhcchhhHH-h
Confidence            44567788888888888877531  111111 123333322210  000000   01111   124555556666555 4


Q ss_pred             cchhccCCCCCCEEecccccCCCCCCccccCCCCCCEEEccCCcCcccCCc-ccccCCcccEeecccccceecCCcccCc
Q 046712          122 IPVKISNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPS-TISHVRNLISFNVAYNQFSGMIPPIYNI  200 (566)
Q Consensus       122 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~l~~~  200 (566)
                      +-..+.-++.|+.|+|++|++.. . +.+..+++|++||++.|.+. .+|. ....++ |+.|++++|.+.+ ...+.++
T Consensus       179 mD~SLqll~ale~LnLshNk~~~-v-~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~-L~~L~lrnN~l~t-L~gie~L  253 (1096)
T KOG1859|consen  179 MDESLQLLPALESLNLSHNKFTK-V-DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGCK-LQLLNLRNNALTT-LRGIENL  253 (1096)
T ss_pred             HHHHHHHHHHhhhhccchhhhhh-h-HHHHhcccccccccccchhc-cccccchhhhh-heeeeecccHHHh-hhhHHhh
Confidence            44455556666666666666652 2 25666666666666666665 2222 222333 6666666665542 2245556


Q ss_pred             ccCceEecccccccccCCCCCCCCCCCCcEEEcccccc
Q 046712          201 SSLQYIFIHTNRFHGSVPLDNGVNLPNLRYFSISGNNL  238 (566)
Q Consensus       201 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  238 (566)
                      .+|+.|++++|-+.+.-.......+..|++|++.+|.+
T Consensus       254 ksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl  291 (1096)
T KOG1859|consen  254 KSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL  291 (1096)
T ss_pred             hhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence            66666666666554333222233445566666666644

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=98.08  E-value=6.9e-06  Score=69.25  Aligned_cols=101  Identities=23%  Similarity=0.138  Sum_probs=75.7

Q ss_pred             eEEEccCCcccccCCcCccCCCCCCEEeCccccccccCCccccCCCCCcEEeCCCCccccc-CCcCCcCCCCCCEEeCCC
Q 046712          453 VLLDLSDNLLSGHFPTKVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTIS-IPSTLSSLKSITELDLSR  531 (566)
Q Consensus       453 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~~~~~-~~~~l~~l~~L~~L~l~~  531 (566)
                      ..+|+++|.+..  ...|..++.|.+|.+++|+++.+.|..-..+++|++|.+.+|.+... ..+.+..||.|+.|.+-+
T Consensus        45 d~iDLtdNdl~~--l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~  122 (233)
T KOG1644|consen   45 DAIDLTDNDLRK--LDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLG  122 (233)
T ss_pred             ceecccccchhh--cccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecC
Confidence            567777777752  24577888999999999999855554444678899999999987742 235678889999999999


Q ss_pred             Ccccccc---CccccccccCceeeccc
Q 046712          532 NNLSGHI---PQYLENLSFLLFLNMSY  555 (566)
Q Consensus       532 n~~~~~~---~~~l~~l~~L~~L~l~~  555 (566)
                      |++...-   .-.+..+|+|+.||..+
T Consensus       123 Npv~~k~~YR~yvl~klp~l~~LDF~k  149 (233)
T KOG1644|consen  123 NPVEHKKNYRLYVLYKLPSLRTLDFQK  149 (233)
T ss_pred             CchhcccCceeEEEEecCcceEeehhh
Confidence            9887432   23667889999988764

>PRK15386 type III secretion protein GogB; Provisional

Probab=98.04  E-value=1.9e-05  Score=75.85  Aligned_cols=137  Identities=12%  Similarity=0.162  Sum_probs=81.4

Q ss_pred             hhccCCCCeecccCCcccccccccccCCCCCCEEEccCCcccccCCccccCCCCCCeEeccCcc-ccccCCCCCcCCCCC
Q 046712          349 IANLVNLNALGVESNQLAGTIPLAIGELKSIQILFLNENFLRGTIPSSLGNLTLLTQLILEVNN-LQGKIPPSNGNCQNL  427 (566)
Q Consensus       349 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~-l~~~~~~~~~~~~~L  427 (566)
                      +..+.++++|++++|.++ .+|. +  ..+|++|.+++|.....+|..+  .++|+.|++++|. +. .+|      ++|
T Consensus        48 ~~~~~~l~~L~Is~c~L~-sLP~-L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~-sLP------~sL  114 (426)
T PRK15386         48 IEEARASGRLYIKDCDIE-SLPV-L--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEIS-GLP------ESV  114 (426)
T ss_pred             HHHhcCCCEEEeCCCCCc-ccCC-C--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccc-ccc------ccc
Confidence            555788999999999777 3442 2  2469999998876544555544  2588888888883 43 333      457


Q ss_pred             cEEEccCCcceeccchhhhhhcccceEEEccCCc-ccc-cCCcCccCCCCCCEEeCccccccccCCccccCCCCCcEEeC
Q 046712          428 ILLTTRKNKLSGIVPRQLLRIITLSVLLDLSDNL-LSG-HFPTKVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGM  505 (566)
Q Consensus       428 ~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~-~~~-~~~~~~~~~~~L~~L~ls~~~l~~~~~~~~~~~~~L~~L~L  505 (566)
                      +.|++..+...     .+..+++.++.|.+.+++ ... ..+..+  -++|+.|++++|... ..|..+.  .+|+.|++
T Consensus       115 e~L~L~~n~~~-----~L~~LPssLk~L~I~~~n~~~~~~lp~~L--PsSLk~L~Is~c~~i-~LP~~LP--~SLk~L~l  184 (426)
T PRK15386        115 RSLEIKGSATD-----SIKNVPNGLTSLSINSYNPENQARIDNLI--SPSLKTLSLTGCSNI-ILPEKLP--ESLQSITL  184 (426)
T ss_pred             ceEEeCCCCCc-----ccccCcchHhheecccccccccccccccc--CCcccEEEecCCCcc-cCccccc--ccCcEEEe
Confidence            77777655432     123344445666664322 110 111111  156778888777755 4444443  57777777


Q ss_pred             CCC
Q 046712          506 QDN  508 (566)
Q Consensus       506 ~~n  508 (566)
                      +.+
T Consensus       185 s~n  187 (426)
T PRK15386        185 HIE  187 (426)
T ss_pred             ccc
Confidence            665

>PRK15386 type III secretion protein GogB; Provisional

Probab=98.02  E-value=2.3e-05  Score=75.25  Aligned_cols=136  Identities=16%  Similarity=0.121  Sum_probs=80.2

Q ss_pred             cCCcEEEccCCCCCCCcchhhhccCCCCeecccCCcccccccccccCCCCCCEEEccCCcccccCCccccCCCCCCeEec
Q 046712          329 TTMTEIAIGSNQISDTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSIQILFLNENFLRGTIPSSLGNLTLLTQLIL  408 (566)
Q Consensus       329 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l  408 (566)
                      ..++.|++++|.+.. +|.   -.++|++|.+++|.-....|..++  ++|++|++++|.....+|      ++|+.|++
T Consensus        52 ~~l~~L~Is~c~L~s-LP~---LP~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP------~sLe~L~L  119 (426)
T PRK15386         52 RASGRLYIKDCDIES-LPV---LPNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLP------ESVRSLEI  119 (426)
T ss_pred             cCCCEEEeCCCCCcc-cCC---CCCCCcEEEccCCCCcccCCchhh--hhhhheEccCcccccccc------cccceEEe
Confidence            678888888887763 342   234688888888654335555443  578888888884222333      45777777


Q ss_pred             cCccccccCCCCCcCC-CCCcEEEccCCcceeccchhhhhhcccceEEEccCCcccccCCcCccCCCCCCEEeCcccc
Q 046712          409 EVNNLQGKIPPSNGNC-QNLILLTTRKNKLSGIVPRQLLRIITLSVLLDLSDNLLSGHFPTKVGNLKNLVSLDISSNM  485 (566)
Q Consensus       409 ~~~~l~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~  485 (566)
                      ..+....     +..+ ++|+.|.+.+++.... ...-..+|+.++.|++++|... ..|..+.  .+|+.|+++.+.
T Consensus       120 ~~n~~~~-----L~~LPssLk~L~I~~~n~~~~-~~lp~~LPsSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~n~  188 (426)
T PRK15386        120 KGSATDS-----IKNVPNGLTSLSINSYNPENQ-ARIDNLISPSLKTLSLTGCSNI-ILPEKLP--ESLQSITLHIEQ  188 (426)
T ss_pred             CCCCCcc-----cccCcchHhheeccccccccc-cccccccCCcccEEEecCCCcc-cCccccc--ccCcEEEecccc
Confidence            6554321     1122 3677777754331100 0000135566788888888765 3444444  578888887763

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.93  E-value=2.7e-06  Score=88.76  Aligned_cols=87  Identities=28%  Similarity=0.285  Sum_probs=40.7

Q ss_pred             cCCCCCCEEeCccccccccCCccccCCCCCcEEeCCCCcccc-cCCcCCcCCCCCCEEeCCCCcccccc------Ccccc
Q 046712          471 GNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTI-SIPSTLSSLKSITELDLSRNNLSGHI------PQYLE  543 (566)
Q Consensus       471 ~~~~~L~~L~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~~~~-~~~~~l~~l~~L~~L~l~~n~~~~~~------~~~l~  543 (566)
                      ..+|+|..||||++++...  ..++.+++|++|.+++=.+.. .....+.+|++|+.||+|.-+.....      -++-.
T Consensus       170 ~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~  247 (699)
T KOG3665|consen  170 ASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGM  247 (699)
T ss_pred             hccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcc
Confidence            3455555555555555421  345555555555555544432 12223444555555555544332110      01222


Q ss_pred             ccccCceeecccCcCc
Q 046712          544 NLSFLLFLNMSYNHFE  559 (566)
Q Consensus       544 ~l~~L~~L~l~~n~~~  559 (566)
                      .+|.|+.||.|++.++
T Consensus       248 ~LpeLrfLDcSgTdi~  263 (699)
T KOG3665|consen  248 VLPELRFLDCSGTDIN  263 (699)
T ss_pred             cCccccEEecCCcchh
Confidence            3455555555555444

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.91  E-value=7.9e-06  Score=51.71  Aligned_cols=36  Identities=39%  Similarity=0.634  Sum_probs=19.1

Q ss_pred             CCcEEeCCCCcccccCCcCCcCCCCCCEEeCCCCccc
Q 046712          499 SLEYLGMQDNSFTISIPSTLSSLKSITELDLSRNNLS  535 (566)
Q Consensus       499 ~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~  535 (566)
                      +|++|++++|+++ .+|..++++++|+.|++++|+++
T Consensus         2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            4556666666655 33444555666666666666555

...

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.85  E-value=8.8e-06  Score=51.50  Aligned_cols=36  Identities=33%  Similarity=0.606  Sum_probs=19.4

Q ss_pred             CCCEEeCccccccccCCccccCCCCCcEEeCCCCccc
Q 046712          475 NLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFT  511 (566)
Q Consensus       475 ~L~~L~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~~~  511 (566)
                      +|++|++++|+++ .++..+.++++|++|++++|+++
T Consensus         2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            4556666666655 34444555666666666666555

...

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.85  E-value=7.4e-07  Score=69.93  Aligned_cols=105  Identities=20%  Similarity=0.278  Sum_probs=55.3

Q ss_pred             CCEEecCCCcccccCCcc---cCCCCCCCEEeCCCCcCCCcCccccccCCCCcEEEcCCCcCCCCcchhccCCCCCCEEe
Q 046712           60 LRSINLPNNSFRGKIPHE---VGNLFRLQNLTLTNNYFLGKILTDLSHCSNLMKFEASNNKLEGEIPVKISNLLMLQILN  136 (566)
Q Consensus        60 L~~L~ls~~~l~~~~~~~---~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~  136 (566)
                      +..+++++|++. .++++   +...+.|+..++++|.+....+..-...+..+.|++++|.++ .+|..+..++.|+.|+
T Consensus        29 ~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lN  106 (177)
T KOG4579|consen   29 LHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLN  106 (177)
T ss_pred             hhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcc
Confidence            344555555554 23332   233344555566666554333333334455566666666665 4455566666666666


Q ss_pred             cccccCCCCCCccccCCCCCCEEEccCCcCc
Q 046712          137 IAENHLKGQLPASIGNLSALQEIDVRGNRLG  167 (566)
Q Consensus       137 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~  167 (566)
                      ++.|.+. ..|..+..+.++..|+..+|.+.
T Consensus       107 l~~N~l~-~~p~vi~~L~~l~~Lds~~na~~  136 (177)
T KOG4579|consen  107 LRFNPLN-AEPRVIAPLIKLDMLDSPENARA  136 (177)
T ss_pred             cccCccc-cchHHHHHHHhHHHhcCCCCccc
Confidence            6666655 44555555556666666555544

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.82  E-value=5.7e-05  Score=61.94  Aligned_cols=126  Identities=21%  Similarity=0.227  Sum_probs=63.4

Q ss_pred             cCccCcCCCCCCEEecCCCcccccCCcccCCCCCCCEEeCCCCcCCCcCccccccCCCCcEEEcCCCcCCCCcchhccCC
Q 046712           50 LSPFVGNLNFLRSINLPNNSFRGKIPHEVGNLFRLQNLTLTNNYFLGKILTDLSHCSNLMKFEASNNKLEGEIPVKISNL  129 (566)
Q Consensus        50 ~~~~~~~l~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l  129 (566)
                      ...+|..+++|+.+.+.. .+......+|.++++|+.+.+.++ +.......|.++++++.+.+.+ .+.......+..+
T Consensus         4 ~~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~   80 (129)
T PF13306_consen    4 GNNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNC   80 (129)
T ss_dssp             -TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-
T ss_pred             CHHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccc
Confidence            345678888888888875 455455667888888888888775 5556666778887888888865 3332344556677


Q ss_pred             CCCCEEecccccCCCCCCccccCCCCCCEEEccCCcCcccCCcccccCCccc
Q 046712          130 LMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLI  181 (566)
Q Consensus       130 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~  181 (566)
                      ++|+.+++..+ +...-...+.++ +|+.+.+..+ +.......|.++++|+
T Consensus        81 ~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~~-~~~i~~~~F~~~~~l~  129 (129)
T PF13306_consen   81 TNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPSN-ITKIEENAFKNCTKLK  129 (129)
T ss_dssp             TTECEEEETTT--BEEHTTTTTT--T--EEE-TTB--SS----GGG------
T ss_pred             ccccccccCcc-ccEEchhhhcCC-CceEEEECCC-ccEECCccccccccCC
Confidence            88888888654 432344556666 7777777653 2324445566665553

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.79  E-value=3.6e-05  Score=64.99  Aligned_cols=59  Identities=17%  Similarity=0.300  Sum_probs=26.6

Q ss_pred             CCCEEecccccCCCCCCccccCCCCCCEEEccCCcCcccCCcccccCCcccEeecccccce
Q 046712          131 MLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVAYNQFS  191 (566)
Q Consensus       131 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~  191 (566)
                      ....+|+++|.+.  -...+..++.|..|.+.+|+|+.+.|.--..+++|+.|.+.+|.+.
T Consensus        43 ~~d~iDLtdNdl~--~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~  101 (233)
T KOG1644|consen   43 QFDAIDLTDNDLR--KLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQ  101 (233)
T ss_pred             ccceecccccchh--hcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchh
Confidence            3444444444443  1233444445555555555554333322233455555555555443

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.74  E-value=2e-06  Score=67.62  Aligned_cols=58  Identities=22%  Similarity=0.405  Sum_probs=22.5

Q ss_pred             CCCEEeCccccccccCCccccCCCCCcEEeCCCCcccccCCcCCcCCCCCCEEeCCCCcc
Q 046712          475 NLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTISIPSTLSSLKSITELDLSRNNL  534 (566)
Q Consensus       475 ~L~~L~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~  534 (566)
                      .++.|++++|.+. .+|+.+..++.|+.|+++.|.+. ..|+-+..+.+|-.|+..+|.+
T Consensus        78 t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~  135 (177)
T KOG4579|consen   78 TATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENAR  135 (177)
T ss_pred             hhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCcc
Confidence            3444444444443 33333444444444444444433 2233333333444444443333

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.74  E-value=6.9e-06  Score=85.80  Aligned_cols=136  Identities=22%  Similarity=0.273  Sum_probs=72.3

Q ss_pred             CcccCceEecccccccccCCCCCCCCCCCCcEEEcccccccccCcccccccCCCCeeecccccccc-cccccccCCCCCc
Q 046712          199 NISSLQYIFIHTNRFHGSVPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINRNLFSG-KVSINFSRLQNLS  277 (566)
Q Consensus       199 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~  277 (566)
                      .+|.|++|.+.+-.+...-......++|+|..||+++++++..  ..++++++|+.|.+.+-.+.. ..-..+..+++|+
T Consensus       146 ~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~  223 (699)
T KOG3665|consen  146 MLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLR  223 (699)
T ss_pred             hCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhHHHHhcccCCC
Confidence            3455555555554433221223333667777777777766643  446666777777766655543 1122355677777


Q ss_pred             EEECCCCccCCcCCCChhhhhhccCCCCCCEEEccCCeeeeecchhHhhhccCCcEEEc
Q 046712          278 RLNLGENNLGTGTTNDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSTTMTEIAI  336 (566)
Q Consensus       278 ~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l  336 (566)
                      .||++.............+.+.-..+|+|+.||.++..+.+.....+...-++|+.+..
T Consensus       224 vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~i~~  282 (699)
T KOG3665|consen  224 VLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQIAA  282 (699)
T ss_pred             eeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhhhhh
Confidence            77777655443331111222334456777777777776664444333333344444443

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.58  E-value=0.00028  Score=57.80  Aligned_cols=37  Identities=24%  Similarity=0.442  Sum_probs=13.2

Q ss_pred             CccCCCCCCEEeCccccccccCCccccCCCCCcEEeCCC
Q 046712          469 KVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQD  507 (566)
Q Consensus       469 ~~~~~~~L~~L~ls~~~l~~~~~~~~~~~~~L~~L~L~~  507 (566)
                      .|..+++|+.+++..+ +.......|.++ .|+.+.+.+
T Consensus        76 ~F~~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~  112 (129)
T PF13306_consen   76 AFSNCTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS  112 (129)
T ss_dssp             TTTT-TTECEEEETTT--BEEHTTTTTT--T--EEE-TT
T ss_pred             cccccccccccccCcc-ccEEchhhhcCC-CceEEEECC
Confidence            3344445555555433 222333334444 555555443

>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=97.37  E-value=6.8e-05  Score=47.33  Aligned_cols=30  Identities=57%  Similarity=1.132  Sum_probs=22.7

Q ss_pred             CcccCC-CCCCCCCCCcCC--CCCCcccccccC
Q 046712            1 MKSQLQ-DPLGVTSSWNNS--INLCQWTGVTCG   30 (566)
Q Consensus         1 ~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~   30 (566)
                      ||+++. ||...+.+|+..  .+||.|.||+|.
T Consensus        11 ~k~~l~~~~~~~l~~W~~~~~~~~C~W~GV~Cd   43 (43)
T PF08263_consen   11 FKKSLNNDPSGVLSSWNPSSDSDPCSWSGVTCD   43 (43)
T ss_dssp             HHHCTT-SC-CCCTT--TT--S-CCCSTTEEE-
T ss_pred             HHHhcccccCcccccCCCcCCCCCeeeccEEeC
Confidence            678888 788999999998  799999999994

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.03  E-value=0.00037  Score=61.72  Aligned_cols=99  Identities=23%  Similarity=0.257  Sum_probs=64.8

Q ss_pred             eEEEccCCcccccCCcCccCCCCCCEEeCccc--cccccCCccccCCCCCcEEeCCCCcccc-cCCcCCcCCCCCCEEeC
Q 046712          453 VLLDLSDNLLSGHFPTKVGNLKNLVSLDISSN--MFSGEIPTTLGGCTSLEYLGMQDNSFTI-SIPSTLSSLKSITELDL  529 (566)
Q Consensus       453 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~--~l~~~~~~~~~~~~~L~~L~L~~n~~~~-~~~~~l~~l~~L~~L~l  529 (566)
                      +.+.+.++.++..  ..|..+++|+.|.++.|  ++....+.....+++|++|++++|++.. .....+..+++|..|++
T Consensus        46 e~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl  123 (260)
T KOG2739|consen   46 ELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDL  123 (260)
T ss_pred             hhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhc
Confidence            5555666666532  34667888888999888  5444444444566889999999888773 22345566778888888


Q ss_pred             CCCccccccC---ccccccccCceeec
Q 046712          530 SRNNLSGHIP---QYLENLSFLLFLNM  553 (566)
Q Consensus       530 ~~n~~~~~~~---~~l~~l~~L~~L~l  553 (566)
                      .+|..+..--   ..|.-+++|..|+-
T Consensus       124 ~n~~~~~l~dyre~vf~ll~~L~~LD~  150 (260)
T KOG2739|consen  124 FNCSVTNLDDYREKVFLLLPSLKYLDG  150 (260)
T ss_pred             ccCCccccccHHHHHHHHhhhhccccc
Confidence            8887775211   24555677766654

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.02  E-value=0.0003  Score=62.32  Aligned_cols=111  Identities=23%  Similarity=0.206  Sum_probs=55.3

Q ss_pred             CCcCCCCCcEEEccCCcceeccchhhhhhcccceEEEccCC--cccccCCcCccCCCCCCEEeCcccccccc-CCccccC
Q 046712          420 SNGNCQNLILLTTRKNKLSGIVPRQLLRIITLSVLLDLSDN--LLSGHFPTKVGNLKNLVSLDISSNMFSGE-IPTTLGG  496 (566)
Q Consensus       420 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~--~~~~~~~~~~~~~~~L~~L~ls~~~l~~~-~~~~~~~  496 (566)
                      ....+..|..+++.++.++..  ..+..++.+ +.|.++.|  ++.+....-...+|+|++|++++|++... ....+..
T Consensus        38 l~d~~~~le~ls~~n~gltt~--~~~P~Lp~L-kkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~  114 (260)
T KOG2739|consen   38 LTDEFVELELLSVINVGLTTL--TNFPKLPKL-KKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKE  114 (260)
T ss_pred             ccccccchhhhhhhccceeec--ccCCCcchh-hhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhh
Confidence            334445555555555555421  223333333 66677766  44433333333457777777777766520 1122444


Q ss_pred             CCCCcEEeCCCCcccccC---CcCCcCCCCCCEEeCCCCc
Q 046712          497 CTSLEYLGMQDNSFTISI---PSTLSSLKSITELDLSRNN  533 (566)
Q Consensus       497 ~~~L~~L~L~~n~~~~~~---~~~l~~l~~L~~L~l~~n~  533 (566)
                      +.+|..|++.+|..+..-   ...|.-+++|..||-....
T Consensus       115 l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv~  154 (260)
T KOG2739|consen  115 LENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDVD  154 (260)
T ss_pred             hcchhhhhcccCCccccccHHHHHHHHhhhhccccccccC
Confidence            556666777766555311   1123445666666654443

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=96.94  E-value=0.00015  Score=74.82  Aligned_cols=36  Identities=19%  Similarity=0.265  Sum_probs=20.2

Q ss_pred             CCEEeCccccccc-cCCccccC-CCCCcEEeCCCCccc
Q 046712          476 LVSLDISSNMFSG-EIPTTLGG-CTSLEYLGMQDNSFT  511 (566)
Q Consensus       476 L~~L~ls~~~l~~-~~~~~~~~-~~~L~~L~L~~n~~~  511 (566)
                      ++.|+++.+.... ........ +..++.+++.++...
T Consensus       403 l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~  440 (482)
T KOG1947|consen  403 LRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVI  440 (482)
T ss_pred             cceEecccCccccccchHHHhhhhhccccCCccCcccc
Confidence            7777777775431 11112222 667777777777543

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=96.69  E-value=0.00012  Score=75.45  Aligned_cols=221  Identities=17%  Similarity=0.083  Sum_probs=111.0

Q ss_pred             ccCCcEEEccCCCCCCC--cchhhhccCCCCeecccCC-ccccc----ccccccCCCCCCEEEccCCc-ccccCCcccc-
Q 046712          328 STTMTEIAIGSNQISDT--IPDVIANLVNLNALGVESN-QLAGT----IPLAIGELKSIQILFLNENF-LRGTIPSSLG-  398 (566)
Q Consensus       328 ~~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~-~~~~~----~~~~~~~~~~L~~L~l~~n~-~~~~~~~~~~-  398 (566)
                      .+.++.+.+.++.-...  .......++.|+.|+++++ .....    .......+++|+.++++.+. +++..-..+. 
T Consensus       187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~  266 (482)
T KOG1947|consen  187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS  266 (482)
T ss_pred             CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence            46777777777743322  2344556778888888763 11101    11233456777777777777 4433333332 


Q ss_pred             CCCCCCeEeccCcc-ccccCC-CCCcCCCCCcEEEccCCcceec-cchhhhhhcccceEEEccCCcccccCCcCccCCCC
Q 046712          399 NLTLLTQLILEVNN-LQGKIP-PSNGNCQNLILLTTRKNKLSGI-VPRQLLRIITLSVLLDLSDNLLSGHFPTKVGNLKN  475 (566)
Q Consensus       399 ~~~~L~~L~l~~~~-l~~~~~-~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~  475 (566)
                      .+++|+.|.+.+|. ++...- .....++.|++|++++|..... .........+.++.+.+..          ...++.
T Consensus       267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~----------~~~c~~  336 (482)
T KOG1947|consen  267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLS----------LNGCPS  336 (482)
T ss_pred             hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhh----------cCCCcc
Confidence            26777777776666 342222 2223567777777777654311 1111111111112221111          112444


Q ss_pred             CCEEeCcccccc---ccCCccccCCCCCcEEeCCCCcccccC-CcCCcCCCCC--------------CEEeCCCCccccc
Q 046712          476 LVSLDISSNMFS---GEIPTTLGGCTSLEYLGMQDNSFTISI-PSTLSSLKSI--------------TELDLSRNNLSGH  537 (566)
Q Consensus       476 L~~L~ls~~~l~---~~~~~~~~~~~~L~~L~L~~n~~~~~~-~~~l~~l~~L--------------~~L~l~~n~~~~~  537 (566)
                      ++.+.+.++...   ......+..++.++.+.+..+...... ...+.+++.|              +.|+++.|.....
T Consensus       337 l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l~~~l~~~~~~~~~l~~L~l~~~~~~t~  416 (482)
T KOG1947|consen  337 LTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGISDLGLELSLRGCPNLTESLELRLCRSDSLRVLNLSDCRLVTD  416 (482)
T ss_pred             HHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhhccCcchHHHhcCCcccchHHHHHhccCCccceEecccCccccc
Confidence            555555544331   122234557788888888877644322 1334444444              6666666655422


Q ss_pred             -cCccccc-cccCceeecccCcC
Q 046712          538 -IPQYLEN-LSFLLFLNMSYNHF  558 (566)
Q Consensus       538 -~~~~l~~-l~~L~~L~l~~n~~  558 (566)
                       .-..... +..++.+++.+++.
T Consensus       417 ~~l~~~~~~~~~~~~l~~~~~~~  439 (482)
T KOG1947|consen  417 KGLRCLADSCSNLKDLDLSGCRV  439 (482)
T ss_pred             cchHHHhhhhhccccCCccCccc
Confidence             2222222 55566677766643

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.59  E-value=0.00014  Score=64.67  Aligned_cols=81  Identities=25%  Similarity=0.272  Sum_probs=38.2

Q ss_pred             CCCcEEEcccccccccCcccccccCCCCeeecccccccccccccccCCCCCcEEECCCCccCCcCCCChhhhhhccCCCC
Q 046712          226 PNLRYFSISGNNLTGSLQDSLSNATNLQGLEINRNLFSGKVSINFSRLQNLSRLNLGENNLGTGTTNDLDFITLLTNCTK  305 (566)
Q Consensus       226 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~  305 (566)
                      .+.++|+.++|.++++  .....++.|+.|.++-|+++...+  +..|+.|+.|++..|.+.+     ++.+..+.++|+
T Consensus        19 ~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~s-----ldEL~YLknlps   89 (388)
T KOG2123|consen   19 ENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIES-----LDELEYLKNLPS   89 (388)
T ss_pred             HHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhccccc-----HHHHHHHhcCch
Confidence            3444555555554432  123445555555555555543332  4455555555555554432     223344555555


Q ss_pred             CCEEEccCCe
Q 046712          306 LEVLDLHSNR  315 (566)
Q Consensus       306 L~~L~l~~~~  315 (566)
                      |+.|-+..|.
T Consensus        90 Lr~LWL~ENP   99 (388)
T KOG2123|consen   90 LRTLWLDENP   99 (388)
T ss_pred             hhhHhhccCC
Confidence            5555554443

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.19  E-value=0.00024  Score=63.21  Aligned_cols=84  Identities=24%  Similarity=0.281  Sum_probs=54.7

Q ss_pred             CCCCCcEEEcccccccccCcccccccCCCCeeeccccccccccc-ccccCCCCCcEEECCCCccCCcCCCChhhhhhccC
Q 046712          224 NLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINRNLFSGKVS-INFSRLQNLSRLNLGENNLGTGTTNDLDFITLLTN  302 (566)
Q Consensus       224 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~  302 (566)
                      .++.|++|.|+-|.|+..  ..+..|.+|++|.+..|.+..... ..+.++|+|+.|-+..|+.......... ...+.-
T Consensus        39 kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR-~~VLR~  115 (388)
T KOG2123|consen   39 KMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCCGEAGQNYR-RKVLRV  115 (388)
T ss_pred             hcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCcccccchhHH-HHHHHH
Confidence            577778888887777643  336778888888888877765433 2357778888888877776554443222 134556


Q ss_pred             CCCCCEEE
Q 046712          303 CTKLEVLD  310 (566)
Q Consensus       303 ~~~L~~L~  310 (566)
                      +|+|++||
T Consensus       116 LPnLkKLD  123 (388)
T KOG2123|consen  116 LPNLKKLD  123 (388)
T ss_pred             cccchhcc
Confidence            67777664

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=95.40  E-value=6e-05  Score=75.39  Aligned_cols=64  Identities=30%  Similarity=0.340  Sum_probs=33.4

Q ss_pred             CCCC-CCEEeCccccccccC----CccccCC-CCCcEEeCCCCccccc----CCcCCcCCCCCCEEeCCCCccc
Q 046712          472 NLKN-LVSLDISSNMFSGEI----PTTLGGC-TSLEYLGMQDNSFTIS----IPSTLSSLKSITELDLSRNNLS  535 (566)
Q Consensus       472 ~~~~-L~~L~ls~~~l~~~~----~~~~~~~-~~L~~L~L~~n~~~~~----~~~~l~~l~~L~~L~l~~n~~~  535 (566)
                      ..++ +.+|++.+|.+.+..    ...+..+ ..+++++++.|.++..    +.+.+..++.++.+.+..|.+.
T Consensus       230 ~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~  303 (478)
T KOG4308|consen  230 SGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLT  303 (478)
T ss_pred             ccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence            3344 555666666655331    2233333 4556666666665542    2233445556666666666554

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.11  E-value=0.002  Score=54.81  Aligned_cols=80  Identities=21%  Similarity=0.199  Sum_probs=48.0

Q ss_pred             eEEEccCCcccccCCcCccCCCCCCEEeCcccccccc-CCcccc-CCCCCcEEeCCCC-cccccCCcCCcCCCCCCEEeC
Q 046712          453 VLLDLSDNLLSGHFPTKVGNLKNLVSLDISSNMFSGE-IPTTLG-GCTSLEYLGMQDN-SFTISIPSTLSSLKSITELDL  529 (566)
Q Consensus       453 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~l~~~-~~~~~~-~~~~L~~L~L~~n-~~~~~~~~~l~~l~~L~~L~l  529 (566)
                      +.++-+++.+..+..+.+.+++.++.|.+.+|.-.+. --+.+. -.++|++|+|++| .|++....++..+++|+.|.+
T Consensus       104 eaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l  183 (221)
T KOG3864|consen  104 EAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHL  183 (221)
T ss_pred             EEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHHh
Confidence            5566677777666666666777777777776643211 001111 2467777777776 366555666666777777776


Q ss_pred             CCC
Q 046712          530 SRN  532 (566)
Q Consensus       530 ~~n  532 (566)
                      .+=
T Consensus       184 ~~l  186 (221)
T KOG3864|consen  184 YDL  186 (221)
T ss_pred             cCc
Confidence            554

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.10  E-value=0.0086  Score=31.26  Aligned_cols=6  Identities=33%  Similarity=0.612  Sum_probs=2.1

Q ss_pred             EeCCCC
Q 046712          503 LGMQDN  508 (566)
Q Consensus       503 L~L~~n  508 (566)
                      |+|++|
T Consensus         5 Ldls~n   10 (22)
T PF00560_consen    5 LDLSGN   10 (22)
T ss_dssp             EEETSS
T ss_pred             EECCCC
Confidence            333333

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=94.95  E-value=0.01  Score=30.99  Aligned_cols=21  Identities=48%  Similarity=0.692  Sum_probs=13.2

Q ss_pred             CCCEEeCCCCccccccCccccc
Q 046712          523 SITELDLSRNNLSGHIPQYLEN  544 (566)
Q Consensus       523 ~L~~L~l~~n~~~~~~~~~l~~  544 (566)
                      +|++||+++|+++ .+|..|.+
T Consensus         1 ~L~~Ldls~n~l~-~ip~~~~~   21 (22)
T PF00560_consen    1 NLEYLDLSGNNLT-SIPSSFSN   21 (22)
T ss_dssp             TESEEEETSSEES-EEGTTTTT
T ss_pred             CccEEECCCCcCE-eCChhhcC
Confidence            4677777777776 55555543

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.70  E-value=0.0064  Score=51.88  Aligned_cols=80  Identities=15%  Similarity=0.186  Sum_probs=39.7

Q ss_pred             CCEEecCCCcccccCCcccCCCCCCCEEeCCCCcC-CCcCcccccc-CCCCcEEEcCCC-cCCCCcchhccCCCCCCEEe
Q 046712           60 LRSINLPNNSFRGKIPHEVGNLFRLQNLTLTNNYF-LGKILTDLSH-CSNLMKFEASNN-KLEGEIPVKISNLLMLQILN  136 (566)
Q Consensus        60 L~~L~ls~~~l~~~~~~~~~~l~~L~~L~l~~~~l-~~~~~~~~~~-l~~L~~L~l~~~-~~~~~~~~~l~~l~~L~~L~  136 (566)
                      ++.+|-+++.|..+.-+.+.+++.++.|.+.+|.- .+...+.+++ .++|+.|++++| +|++.....+.++++|+.|.
T Consensus       103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~  182 (221)
T KOG3864|consen  103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLH  182 (221)
T ss_pred             EEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHH
Confidence            45555555555544444555555666666655532 1111122222 355666666654 34444444455555555555


Q ss_pred             ccc
Q 046712          137 IAE  139 (566)
Q Consensus       137 l~~  139 (566)
                      +++
T Consensus       183 l~~  185 (221)
T KOG3864|consen  183 LYD  185 (221)
T ss_pred             hcC
Confidence            544

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=93.27  E-value=0.00051  Score=68.86  Aligned_cols=261  Identities=21%  Similarity=0.185  Sum_probs=143.0

Q ss_pred             hhccCCCCCCEEEccCCeeeeecchhHhhh----ccCCcEEEccCCCCCCC----cchhhhccCCCCeecccCCccccc-
Q 046712          298 TLLTNCTKLEVLDLHSNRFGGVLPFSLANL----STTMTEIAIGSNQISDT----IPDVIANLVNLNALGVESNQLAGT-  368 (566)
Q Consensus       298 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~----~~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~~~~-  368 (566)
                      ..+...+.|+.|++++|.+.+.....+...    ...++.|.+..|.+++.    +...+...+.++.++++.|.+... 
T Consensus       109 ~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g  188 (478)
T KOG4308|consen  109 QALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELG  188 (478)
T ss_pred             HHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchhh
Confidence            344555566666666665553322222221    13455566666766543    344566688899999999987421 


Q ss_pred             ---cccccc----CCCCCCEEEccCCccccc----CCccccCCCC-CCeEeccCcccccc----CCCCCcCC-CCCcEEE
Q 046712          369 ---IPLAIG----ELKSIQILFLNENFLRGT----IPSSLGNLTL-LTQLILEVNNLQGK----IPPSNGNC-QNLILLT  431 (566)
Q Consensus       369 ---~~~~~~----~~~~L~~L~l~~n~~~~~----~~~~~~~~~~-L~~L~l~~~~l~~~----~~~~~~~~-~~L~~L~  431 (566)
                         .+..+.    ...++++|.+++|.++..    ....+...++ +.++++..|.+...    ....+..+ +.++.++
T Consensus       189 ~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~  268 (478)
T KOG4308|consen  189 LLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLD  268 (478)
T ss_pred             hHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhh
Confidence               222333    366888899999887632    2234444555 77788888887633    22334445 6778888


Q ss_pred             ccCCcceeccchhhhhhc---ccceEEEccCCcccccCC----cCccCCCCCCEEeCccccccccCCc------------
Q 046712          432 TRKNKLSGIVPRQLLRII---TLSVLLDLSDNLLSGHFP----TKVGNLKNLVSLDISSNMFSGEIPT------------  492 (566)
Q Consensus       432 l~~~~~~~~~~~~~~~~~---~~l~~L~l~~~~~~~~~~----~~~~~~~~L~~L~ls~~~l~~~~~~------------  492 (566)
                      +..|.+.+.....+.+..   +.++.+.++++.+.....    +.......+..+-+.++......+.            
T Consensus       269 l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  348 (478)
T KOG4308|consen  269 LSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTDYGVELLLEALERKTPLLHLVLGGTGKGTRGGTSVLAEADAQRQL  348 (478)
T ss_pred             hhcCCccccchHHHHHHHhhhHHHHHhhcccCccccHHHHHHHHHhhhcccchhhhccccCccchhHHHHHHHHHHHhhh
Confidence            888888765544443322   234677777777764322    2223344556666665543322110            


Q ss_pred             ---------------------cccCC-CCCcEEeCCCCcccc----cCCcCCcCCCCCCEEeCCCCccccccCc-----c
Q 046712          493 ---------------------TLGGC-TSLEYLGMQDNSFTI----SIPSTLSSLKSITELDLSRNNLSGHIPQ-----Y  541 (566)
Q Consensus       493 ---------------------~~~~~-~~L~~L~L~~n~~~~----~~~~~l~~l~~L~~L~l~~n~~~~~~~~-----~  541 (566)
                                           ..... +.+..+++..+.+.+    .+...+...+.++.++++.|......+.     .
T Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~l~~~~l~~n~~~~~~~~~l~~~~  428 (478)
T KOG4308|consen  349 LSELGISGNRVGEEGLALLVLAKSNPKSELLRLSLNSQVIEGRGALRLAAQLASNEKLEILDLSLNSLHDEGAEVLTEQL  428 (478)
T ss_pred             hHHHHhhhccchHHHHHHHhhhhcccCcccchhhhhccccccHHHHHhhhhhhhcchhhhhhhhcCccchhhHHHHHHhh
Confidence                                 00000 224444444443332    2334445567777777777755433222     1


Q ss_pred             ccccccCceeecccCcCc
Q 046712          542 LENLSFLLFLNMSYNHFE  559 (566)
Q Consensus       542 l~~l~~L~~L~l~~n~~~  559 (566)
                      -.+. .++.+.++.|+++
T Consensus       429 ~~~~-~~~~~~l~~~~~~  445 (478)
T KOG4308|consen  429 SRNG-SLKALRLSRNPIT  445 (478)
T ss_pred             hhcc-cchhhhhccChhh
Confidence            2233 6777777777655

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=92.47  E-value=0.0011  Score=57.42  Aligned_cols=87  Identities=15%  Similarity=0.188  Sum_probs=51.0

Q ss_pred             cCCCCCCCEEeCCCCcCCCcCccccccCCCCcEEEcCCCcCCCCcchhccCCCCCCEEecccccCCCCCCccccCCCCCC
Q 046712           78 VGNLFRLQNLTLTNNYFLGKILTDLSHCSNLMKFEASNNKLEGEIPVKISNLLMLQILNIAENHLKGQLPASIGNLSALQ  157 (566)
Q Consensus        78 ~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~  157 (566)
                      +..+...+.||++.|++.. .-..|.-++.|..++++.|++. ..|..++....++.+++..|... ..|.++...++++
T Consensus        38 i~~~kr~tvld~~s~r~vn-~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k  114 (326)
T KOG0473|consen   38 IASFKRVTVLDLSSNRLVN-LGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPK  114 (326)
T ss_pred             hhccceeeeehhhhhHHHh-hccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcc
Confidence            3444455555555555432 2233444555666666666655 55666666666666666666665 5666666777777


Q ss_pred             EEEccCCcCc
Q 046712          158 EIDVRGNRLG  167 (566)
Q Consensus       158 ~L~l~~~~i~  167 (566)
                      ++++.++.+.
T Consensus       115 ~~e~k~~~~~  124 (326)
T KOG0473|consen  115 KNEQKKTEFF  124 (326)
T ss_pred             hhhhccCcch
Confidence            7776666543

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=92.10  E-value=0.092  Score=25.31  Aligned_cols=12  Identities=50%  Similarity=0.722  Sum_probs=4.1

Q ss_pred             CCCEEeCccccc
Q 046712          475 NLVSLDISSNMF  486 (566)
Q Consensus       475 ~L~~L~ls~~~l  486 (566)
                      +|+.|++++|++
T Consensus         2 ~L~~L~l~~n~L   13 (17)
T PF13504_consen    2 NLRTLDLSNNRL   13 (17)
T ss_dssp             T-SEEEETSS--
T ss_pred             ccCEEECCCCCC
Confidence            344444444443

...

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=91.68  E-value=0.0035  Score=54.49  Aligned_cols=89  Identities=18%  Similarity=0.212  Sum_probs=66.2

Q ss_pred             cCccCCCCCCEEeCccccccccCCccccCCCCCcEEeCCCCcccccCCcCCcCCCCCCEEeCCCCccccccCcccccccc
Q 046712          468 TKVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTISIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSF  547 (566)
Q Consensus       468 ~~~~~~~~L~~L~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~  547 (566)
                      ..+..+...+.||++.|++- -.-..|+-++.|..|+++.|.+. ..|+.+.....++.+++..|... ..|.++...++
T Consensus        36 ~ei~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~  112 (326)
T KOG0473|consen   36 REIASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPH  112 (326)
T ss_pred             hhhhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCC
Confidence            34556777788888888765 44455666777888888888777 57777877788888888777776 66777888888


Q ss_pred             CceeecccCcCc
Q 046712          548 LLFLNMSYNHFE  559 (566)
Q Consensus       548 L~~L~l~~n~~~  559 (566)
                      ++.+++.+|++.
T Consensus       113 ~k~~e~k~~~~~  124 (326)
T KOG0473|consen  113 PKKNEQKKTEFF  124 (326)
T ss_pred             cchhhhccCcch
Confidence            888888877654

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=87.87  E-value=0.13  Score=27.33  Aligned_cols=13  Identities=38%  Similarity=0.705  Sum_probs=4.5

Q ss_pred             CCCEEeCCCCccc
Q 046712          523 SITELDLSRNNLS  535 (566)
Q Consensus       523 ~L~~L~l~~n~~~  535 (566)
                      +|++|+|++|++.
T Consensus         3 ~L~~L~l~~n~i~   15 (24)
T PF13516_consen    3 NLETLDLSNNQIT   15 (24)
T ss_dssp             T-SEEE-TSSBEH
T ss_pred             CCCEEEccCCcCC
Confidence            3444444444433

...

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=87.13  E-value=0.49  Score=25.68  Aligned_cols=14  Identities=57%  Similarity=0.771  Sum_probs=7.6

Q ss_pred             CCCCEEeCCCCccc
Q 046712          522 KSITELDLSRNNLS  535 (566)
Q Consensus       522 ~~L~~L~l~~n~~~  535 (566)
                      ++|+.|+|++|++.
T Consensus         2 ~~L~~L~L~~N~l~   15 (26)
T smart00369        2 PNLRELDLSNNQLS   15 (26)
T ss_pred             CCCCEEECCCCcCC
Confidence            44555555555555

>smart00370 LRR Leucine-rich repeats, outliers

Probab=87.13  E-value=0.49  Score=25.68  Aligned_cols=14  Identities=57%  Similarity=0.771  Sum_probs=7.6

Q ss_pred             CCCCEEeCCCCccc
Q 046712          522 KSITELDLSRNNLS  535 (566)
Q Consensus       522 ~~L~~L~l~~n~~~  535 (566)
                      ++|+.|+|++|++.
T Consensus         2 ~~L~~L~L~~N~l~   15 (26)
T smart00370        2 PNLRELDLSNNQLS   15 (26)
T ss_pred             CCCCEEECCCCcCC
Confidence            44555555555555

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=85.74  E-value=0.69  Score=25.07  Aligned_cols=14  Identities=36%  Similarity=0.570  Sum_probs=8.0

Q ss_pred             CCCCEEecCCCccc
Q 046712           58 NFLRSINLPNNSFR   71 (566)
Q Consensus        58 ~~L~~L~ls~~~l~   71 (566)
                      ++|++|++++|.+.
T Consensus         2 ~~L~~L~L~~N~l~   15 (26)
T smart00369        2 PNLRELDLSNNQLS   15 (26)
T ss_pred             CCCCEEECCCCcCC
Confidence            45555666655555

>smart00370 LRR Leucine-rich repeats, outliers

Probab=85.74  E-value=0.69  Score=25.07  Aligned_cols=14  Identities=36%  Similarity=0.570  Sum_probs=8.0

Q ss_pred             CCCCEEecCCCccc
Q 046712           58 NFLRSINLPNNSFR   71 (566)
Q Consensus        58 ~~L~~L~ls~~~l~   71 (566)
                      ++|++|++++|.+.
T Consensus         2 ~~L~~L~L~~N~l~   15 (26)
T smart00370        2 PNLRELDLSNNQLS   15 (26)
T ss_pred             CCCCEEECCCCcCC
Confidence            45555666655555

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	566
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		8e-45
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		1e-44
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		2e-17
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		3e-17
2omv_A	461	Crystal Structure Of Inla S192n Y369s/hec1 Complex		3e-10
2omv_A	461	Crystal Structure Of Inla S192n Y369s/hec1 Complex		1e-06
2omy_A	461	Crystal Structure Of Inla S192n/hec1 Complex Length		3e-10
2omy_A	461	Crystal Structure Of Inla S192n/hec1 Complex Length		1e-06
2omx_A	462	Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX		3e-10
2omu_A	462	Crystal Structure Of Inla G194s+s Y369s/hec1 Comple		3e-10
2omt_A	462	Crystal Structure Of Inla G194s+sHEC1 COMPLEX Lengt		5e-10
2omz_A	466	Crystal Structure Of Inla Y369a/hec1 Complex Length		9e-10
2omz_A	466	Crystal Structure Of Inla Y369a/hec1 Complex Length		7e-07
1o6s_A	466	Internalin (Listeria Monocytogenes) E-Cadherin (Hum		9e-10
1o6s_A	466	Internalin (Listeria Monocytogenes) E-Cadherin (Hum		8e-07
4fmz_A	347	Crystal Structure Of An Internalin (Inlf) From List		1e-07
3rfs_A	272	Design Of A Binding Scaffold Based On Variable Lymp		1e-07
4g8a_A	635	Crystal Structure Of Human Tlr4 Polymorphic Variant		2e-05
3fxi_A	605	Crystal Structure Of The Human Tlr4-Human Md-2-E.Co		3e-05
2z66_A	306	Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 A		4e-05
3j0a_A	844	Homology Model Of Human Toll-Like Receptor 5 Fitted		7e-05
2o6s_A	208	Structural Diversity Of The Hagfish Variable Lympho		3e-04
2z63_A	570	Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 A		4e-04
2z63_A	570	Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 A		5e-04

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score =  178 bits (451), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 164/598 (27%), Positives = 281/598 (46%), Gaps = 73/598 (12%)
Query: 25  TGVTCGHRRQRVTGLDLRHQSVGGVLSPF--VGNLNFLRSINLPNNS--FRGKIPHEVGN 80
           +G  C      +T LDL   S+ G ++    +G+ + L+ +N+ +N+  F GK+   +  
Sbjct: 94  SGFKC---SASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGL-K 149
Query: 81  LFRLQNLTLTNNYF-----LGKILTDLSHCSNLMKFEASNNKLEGEIPVKISNLLMLQIL 135
           L  L+ L L+ N       +G +L+D   C  L     S NK+ G+  V +S  + L+ L
Sbjct: 150 LNSLEVLDLSANSISGANVVGWVLSD--GCGELKHLAISGNKISGD--VDVSRCVNLEFL 205
Query: 136 NIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVAYNQFSGMIP 195
           +++ N+    +P  +G+ SALQ +D+ GN+L G     IS    L   N++ NQF G IP
Sbjct: 206 DVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIP 264
Query: 196 PIYNISSLQYIFIHTNRFHGSVPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGL 255
           P+  + SLQY+ +  N+F G +P         L    +SGN+  G++     + + L+ L
Sbjct: 265 PL-PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESL 323
Query: 256 EINRNLFSGKVSIN-FSRLQNLSRLNLGENNLGTGTTNDLDFITLLTNCTKLEVLDLHSN 314
            ++ N FSG++ ++   +++ L  L+L  N         L  ++       L  LDL SN
Sbjct: 324 ALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLS-----ASLLTLDLSSN 378
Query: 315 RFGG-VLPFSLANLSTTMTEIAIGSNQISDTIPDVIANLVNLNALGVESNQLAGTIPLAI 373
            F G +LP    N   T+ E+ + +N  +  IP  ++N   L +L +  N L+GTIP ++
Sbjct: 379 NFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSL 438
Query: 374 GELKSIQILFLNENFLRGTIPSSXXXXXXXXXXXXEVNNLQGKIPPSNGNCQNLILLTTR 433
           G L  ++ L L  N L G IP              + N+L G+IP    NC NL  ++  
Sbjct: 439 GSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLS 498
Query: 434 KNKLSGIVPRQLLRIITXXXXXXXXXXXXXGHFPTKVGNLKNLVSLDISSNMFSGEIPTT 493
            N+L+G +P+ + R+               G+ P ++G+ ++L+ LD+++N+F+G IP  
Sbjct: 499 NNRLTGEIPKWIGRL-ENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAA 557
Query: 494 L------------------------------GGCTSLEYLGM---QDNSFTISIPSTLSS 520
           +                              G    LE+ G+   Q N  +   P  ++S
Sbjct: 558 MFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITS 617
Query: 521 L-------------KSITELDLSRNNLSGHIPQYLENLSFLLFLNMSYNHFEGKVPIE 565
                          S+  LD+S N LSG+IP+ + ++ +L  LN+ +N   G +P E
Sbjct: 618 RVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDE 675

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score =  177 bits (450), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 164/598 (27%), Positives = 281/598 (46%), Gaps = 73/598 (12%)
Query: 25  TGVTCGHRRQRVTGLDLRHQSVGGVLSPF--VGNLNFLRSINLPNNS--FRGKIPHEVGN 80
           +G  C      +T LDL   S+ G ++    +G+ + L+ +N+ +N+  F GK+   +  
Sbjct: 91  SGFKC---SASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGL-K 146
Query: 81  LFRLQNLTLTNNYF-----LGKILTDLSHCSNLMKFEASNNKLEGEIPVKISNLLMLQIL 135
           L  L+ L L+ N       +G +L+D   C  L     S NK+ G+  V +S  + L+ L
Sbjct: 147 LNSLEVLDLSANSISGANVVGWVLSD--GCGELKHLAISGNKISGD--VDVSRCVNLEFL 202
Query: 136 NIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVAYNQFSGMIP 195
           +++ N+    +P  +G+ SALQ +D+ GN+L G     IS    L   N++ NQF G IP
Sbjct: 203 DVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIP 261
Query: 196 PIYNISSLQYIFIHTNRFHGSVPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGL 255
           P+  + SLQY+ +  N+F G +P         L    +SGN+  G++     + + L+ L
Sbjct: 262 PL-PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESL 320
Query: 256 EINRNLFSGKVSIN-FSRLQNLSRLNLGENNLGTGTTNDLDFITLLTNCTKLEVLDLHSN 314
            ++ N FSG++ ++   +++ L  L+L  N         L  ++       L  LDL SN
Sbjct: 321 ALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLS-----ASLLTLDLSSN 375
Query: 315 RFGG-VLPFSLANLSTTMTEIAIGSNQISDTIPDVIANLVNLNALGVESNQLAGTIPLAI 373
            F G +LP    N   T+ E+ + +N  +  IP  ++N   L +L +  N L+GTIP ++
Sbjct: 376 NFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSL 435
Query: 374 GELKSIQILFLNENFLRGTIPSSXXXXXXXXXXXXEVNNLQGKIPPSNGNCQNLILLTTR 433
           G L  ++ L L  N L G IP              + N+L G+IP    NC NL  ++  
Sbjct: 436 GSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLS 495
Query: 434 KNKLSGIVPRQLLRIITXXXXXXXXXXXXXGHFPTKVGNLKNLVSLDISSNMFSGEIPTT 493
            N+L+G +P+ + R+               G+ P ++G+ ++L+ LD+++N+F+G IP  
Sbjct: 496 NNRLTGEIPKWIGRL-ENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAA 554
Query: 494 L------------------------------GGCTSLEYLGM---QDNSFTISIPSTLSS 520
           +                              G    LE+ G+   Q N  +   P  ++S
Sbjct: 555 MFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITS 614
Query: 521 L-------------KSITELDLSRNNLSGHIPQYLENLSFLLFLNMSYNHFEGKVPIE 565
                          S+  LD+S N LSG+IP+ + ++ +L  LN+ +N   G +P E
Sbjct: 615 RVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDE 672

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 87.8 bits (216), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 66/208 (31%), Positives = 106/208 (50%), Gaps = 10/208 (4%)
Query: 122 IPVKISNLLMLQILNIAE-NHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNL 180
           IP  ++NL  L  L I   N+L G +P +I  L+ L  + +    + G IP  +S ++ L
Sbjct: 68  IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127
Query: 181 ISFNVAYNQFSGMIPP-IYNISSLQYIFIHTNRFHGSVPLDNGVNLPNLRYFSISGNNLT 239
           ++ + +YN  SG +PP I ++ +L  I    NR  G++P   G         +IS N LT
Sbjct: 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT 187
Query: 240 GSLQDSLSNATNLQGLEINRNLFSGKVSINFSRLQNLSRLNLGENNLGTGTTNDLDFITL 299
           G +  + +N  NL  ++++RN+  G  S+ F   +N  +++L +N+L      DL  + L
Sbjct: 188 GKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAF----DLGKVGL 242
Query: 300 LTNCTKLEVLDLHSNRFGGVLPFSLANL 327
             N   L  LDL +NR  G LP  L  L
Sbjct: 243 SKN---LNGLDLRNNRIYGTLPQGLTQL 267

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 86.7 bits (213), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 65/220 (29%), Positives = 97/220 (44%), Gaps = 3/220 (1%)
Query: 345 IPDVIANLVNLNALGVES-NQLAGTIPLAIGELKSIQILFLNENFLRGTIPSSXXXXXXX 403
           IP  +ANL  LN L +   N L G IP AI +L  +  L++    + G IP         
Sbjct: 68  IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127
Query: 404 XXXXXEVNNLQGKIPPSNGNCQNLILLTTRKNKLSGIVPRQLLRIITXXXXXXXXXXXXX 463
                  N L G +PPS  +  NL+ +T   N++SG +P                     
Sbjct: 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT 187
Query: 464 GHFPTKVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTISIPSTLSSLKS 523
           G  P    NL NL  +D+S NM  G+     G   + + + +  NS    +   +   K+
Sbjct: 188 GKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDL-GKVGLSKN 245
Query: 524 ITELDLSRNNLSGHIPQYLENLSFLLFLNMSYNHFEGKVP 563
           +  LDL  N + G +PQ L  L FL  LN+S+N+  G++P
Sbjct: 246 LNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285

>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex Length = 461

Iteration: 1
 Score = 63.5 bits (153), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 72/223 (32%), Positives = 106/223 (47%), Gaps = 27/223 (12%)
Query: 157 QEIDVRGNRLGGRIPSTISHVRNLISFNVAYNQFSGMIPPIYNISSLQYIFIHTNRFHGS 216
           Q   ++ +RLG +    + ++ NL   N + NQ +  I P+ N++ L  I ++ N+    
Sbjct: 42  QVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTD-ITPLKNLTKLVDILMNNNQIADI 100
Query: 217 VPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINRNLFSGKVSINFSRLQNL 276
            PL N  NL  L  F    N +T    D L N TNL  LE++ N  S   ++  S L +L
Sbjct: 101 TPLANLTNLTGLTLF---NNQITDI--DPLKNLTNLNRLELSSNTISDISAL--SGLTSL 153
Query: 277 SRLNLGENNLGTGTTNDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSTTMTEIAI 336
            +LN G         N +  +  L N T LE LD+ SN+   +    LA L+   + IA 
Sbjct: 154 QQLNFG---------NQVTDLKPLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIAT 202
Query: 337 GSNQISDTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSI 379
            +NQISD  P  +  L NL+ L +  NQL       IG L S+
Sbjct: 203 -NNQISDITP--LGILTNLDELSLNGNQLKD-----IGTLASL 237

>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex Length = 461

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 114/468 (24%), Positives = 190/468 (40%), Gaps = 112/468 (23%)
Query: 102 LSHCSNLMKFEASNNKLEGEIPVKISNLLMLQILNIAENHLKGQLPASIGNLSALQEIDV 161
           + + +NL +   SNN+L    P+K                          NL+ L +I +
Sbjct: 59  VEYLNNLTQINFSNNQLTDITPLK--------------------------NLTKLVDILM 92
Query: 162 RGNRLGGRIPSTISHVRNLISFNVAYNQFSGMIPPIYNISSLQYIFIHTNRFHGSVPLDN 221
             N++    P  ++++ NL    +  NQ +  I P+ N+++L  + + +N       L  
Sbjct: 93  NNNQIADITP--LANLTNLTGLTLFNNQITD-IDPLKNLTNLNRLELSSNTISDISALSG 149
Query: 222 GVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINRNLFSGKVSINFSRLQNLSRLNL 281
             +L  L +    GN +T      L+N T L+ L+I+ N  S  +S+  ++L NL  L  
Sbjct: 150 LTSLQQLNF----GNQVTD--LKPLANLTTLERLDISSNKVS-DISV-LAKLTNLESL-- 199
Query: 282 GENNLGTGTTNDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQI 341
                   T N +  IT L   T L+ L L+ N+   +   +LA+L T +T++ + +NQI
Sbjct: 200 ------IATNNQISDITPLGILTNLDELSLNGNQLKDI--GTLASL-TNLTDLDLANNQI 250
Query: 342 SDTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSIQILFLNENFLRGTIPSSXXXXX 401
           S+  P  ++ L  L  L + +NQ++   PLA   L ++  L LNEN L    P S     
Sbjct: 251 SNLAP--LSGLTKLTELKLGANQISNISPLA--GLTALTNLELNENQLEDISPIS----- 301
Query: 402 XXXXXXXEVNNLQGKIPPSNGNCQNLILLTTRKNKLSGIVPRQLLRIITXXXXXXXXXXX 461
                                N +NL  LT   N +S I P   L  +            
Sbjct: 302 ---------------------NLKNLTYLTLYFNNISDISPVSSLTKLQRLFFSNNKVSD 340
Query: 462 XXGHFPTKVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFT---------I 512
                 + + NL N+  L    N  S   P  L   T +  LG+ D ++T         +
Sbjct: 341 V-----SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVNYKANV 393
Query: 513 SIPSTLSSLK-------------SITELDLSRNNLSGHIPQYLENLSF 547
           SIP+T+ ++              S TE D++ N     +P Y   +S+
Sbjct: 394 SIPNTVKNVTGALIAPATISDGGSYTEPDITWN-----LPSYTNEVSY 436

>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex Length = 461

Iteration: 1
 Score = 63.5 bits (153), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 72/223 (32%), Positives = 107/223 (47%), Gaps = 27/223 (12%)
Query: 157 QEIDVRGNRLGGRIPSTISHVRNLISFNVAYNQFSGMIPPIYNISSLQYIFIHTNRFHGS 216
           Q   ++ +RLG +    + ++ NL   N + NQ +  I P+ N++ L  I ++ N+    
Sbjct: 42  QVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTD-ITPLKNLTKLVDILMNNNQIADI 100
Query: 217 VPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINRNLFSGKVSINFSRLQNL 276
            PL N  NL  L  F+   N +T    D L N TNL  LE++ N  S   ++  S L +L
Sbjct: 101 TPLANLTNLTGLTLFN---NQITDI--DPLKNLTNLNRLELSSNTISDISAL--SGLTSL 153
Query: 277 SRLNLGENNLGTGTTNDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSTTMTEIAI 336
            +LN G         N +  +  L N T LE LD+ SN+   +    LA L+   + IA 
Sbjct: 154 QQLNFG---------NQVTDLKPLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIAT 202
Query: 337 GSNQISDTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSI 379
            +NQISD  P  +  L NL+ L +  NQL       IG L S+
Sbjct: 203 -NNQISDITP--LGILTNLDELSLNGNQLKD-----IGTLASL 237

>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex Length = 461

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 114/468 (24%), Positives = 190/468 (40%), Gaps = 112/468 (23%)
Query: 102 LSHCSNLMKFEASNNKLEGEIPVKISNLLMLQILNIAENHLKGQLPASIGNLSALQEIDV 161
           + + +NL +   SNN+L    P+K                          NL+ L +I +
Sbjct: 59  VEYLNNLTQINFSNNQLTDITPLK--------------------------NLTKLVDILM 92
Query: 162 RGNRLGGRIPSTISHVRNLISFNVAYNQFSGMIPPIYNISSLQYIFIHTNRFHGSVPLDN 221
             N++    P  ++++ NL    +  NQ +  I P+ N+++L  + + +N       L  
Sbjct: 93  NNNQIADITP--LANLTNLTGLTLFNNQITD-IDPLKNLTNLNRLELSSNTISDISALSG 149
Query: 222 GVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINRNLFSGKVSINFSRLQNLSRLNL 281
             +L  L +    GN +T      L+N T L+ L+I+ N  S  +S+  ++L NL  L  
Sbjct: 150 LTSLQQLNF----GNQVTD--LKPLANLTTLERLDISSNKVS-DISV-LAKLTNLESL-- 199
Query: 282 GENNLGTGTTNDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQI 341
                   T N +  IT L   T L+ L L+ N+   +   +LA+L T +T++ + +NQI
Sbjct: 200 ------IATNNQISDITPLGILTNLDELSLNGNQLKDI--GTLASL-TNLTDLDLANNQI 250
Query: 342 SDTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSIQILFLNENFLRGTIPSSXXXXX 401
           S+  P  ++ L  L  L + +NQ++   PLA   L ++  L LNEN L    P S     
Sbjct: 251 SNLAP--LSGLTKLTELKLGANQISNISPLA--GLTALTNLELNENQLEDISPIS----- 301
Query: 402 XXXXXXXEVNNLQGKIPPSNGNCQNLILLTTRKNKLSGIVPRQLLRIITXXXXXXXXXXX 461
                                N +NL  LT   N +S I P   L  +            
Sbjct: 302 ---------------------NLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSD 340
Query: 462 XXGHFPTKVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFT---------I 512
                 + + NL N+  L    N  S   P  L   T +  LG+ D ++T         +
Sbjct: 341 V-----SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVNYKANV 393
Query: 513 SIPSTLSSLK-------------SITELDLSRNNLSGHIPQYLENLSF 547
           SIP+T+ ++              S TE D++ N     +P Y   +S+
Sbjct: 394 SIPNTVKNVTGALIAPATISDGGSYTEPDITWN-----LPSYTNEVSY 436

>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX Length = 462

Iteration: 1
 Score = 63.5 bits (153), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 107/385 (27%), Positives = 161/385 (41%), Gaps = 62/385 (16%)
Query: 157 QEIDVRGNRLGGRIPSTISHVRNLISFNVAYNQFSGMIPPIYNISSLQYIFIHTNRFHGS 216
           Q   ++ +RLG +    + ++ NL   N + NQ +  I P+ N++ L  I ++ N+    
Sbjct: 42  QVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTD-ITPLKNLTKLVDILMNNNQIADI 100
Query: 217 VPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINRNLFSGKVSINFSRLQNL 276
            PL N  NL  L  F    N +T    D L N TNL  LE++ N  S             
Sbjct: 101 TPLANLTNLTGLTLF---NNQITDI--DPLKNLTNLNRLELSSNTISD------------ 143
Query: 277 SRLNLGENNLGTGTTNDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSTTMTEIAI 336
                               I+ L+  T L+ L+  SN+   + P  LANL TT+  + I
Sbjct: 144 --------------------ISALSGLTSLQQLNFSSNQVTDLKP--LANL-TTLERLDI 180
Query: 337 GSNQISDTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSIQILFLNENFLR--GTIP 394
            SN++SD    V+A L NL +L   +NQ++   PL I  L ++  L LN N L+  GT+ 
Sbjct: 181 SSNKVSDI--SVLAKLTNLESLIATNNQISDITPLGI--LTNLDELSLNGNQLKDIGTLA 236
Query: 395 SSXXXXXXXXXXXXEVNNLQGKIPPSNGNCQNLILLTTRKNKLSGIVPRQLLRIITXXXX 454
           S               NN    + P +G    L  L    N++S I P   L  +T    
Sbjct: 237 S-----LTNLTDLDLANNQISNLAPLSG-LTKLTELKLGANQISNISPLAGLTALTNLEL 290
Query: 455 XXXXXXXXXGHFPTKVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTISI 514
                        + + NLKNL  L +  N  S   P  +   T L+ L   +N   +S 
Sbjct: 291 NENQLEDI-----SPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNK--VSD 341
Query: 515 PSTLSSLKSITELDLSRNNLSGHIP 539
            S+L++L +I  L    N +S   P
Sbjct: 342 VSSLANLTNINWLSAGHNQISDLTP 366

>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex Length = 462

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 115/468 (24%), Positives = 191/468 (40%), Gaps = 111/468 (23%)
Query: 102 LSHCSNLMKFEASNNKLEGEIPVKISNLLMLQILNIAENHLKGQLPASIGNLSALQEIDV 161
           + + +NL +   SNN+L    P+K                          NL+ L +I +
Sbjct: 59  VEYLNNLTQINFSNNQLTDITPLK--------------------------NLTKLVDILM 92
Query: 162 RGNRLGGRIPSTISHVRNLISFNVAYNQFSGMIPPIYNISSLQYIFIHTNRFHGSVPLDN 221
             N++    P  ++++ NL    +  NQ +  I P+ N+++L  + + +N       L  
Sbjct: 93  NNNQIADITP--LANLTNLTGLTLFNNQITD-IDPLKNLTNLNRLELSSNTISDISALS- 148
Query: 222 GVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINRNLFSGKVSINFSRLQNLSRLNL 281
              L +L+  S S N +T      L+N T L+ L+I+ N  S  +S+  ++L NL  L  
Sbjct: 149 --GLTSLQQLSFSSNQVTD--LKPLANLTTLERLDISSNKVS-DISV-LAKLTNLESL-- 200
Query: 282 GENNLGTGTTNDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQI 341
                   T N +  IT L   T L+ L L+ N+   +   +LA+L T +T++ + +NQI
Sbjct: 201 ------IATNNQISDITPLGILTNLDELSLNGNQLKDI--GTLASL-TNLTDLDLANNQI 251
Query: 342 SDTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSIQILFLNENFLRGTIPSSXXXXX 401
           S+  P  ++ L  L  L + +NQ++   PLA   L ++  L LNEN L    P S     
Sbjct: 252 SNLAP--LSGLTKLTELKLGANQISNISPLA--GLTALTNLELNENQLEDISPIS----- 302
Query: 402 XXXXXXXEVNNLQGKIPPSNGNCQNLILLTTRKNKLSGIVPRQLLRIITXXXXXXXXXXX 461
                                N +NL  LT   N +S I P   L  +            
Sbjct: 303 ---------------------NLKNLTYLTLYFNNISDISPVSSLTKLQRLFFSNNKVSD 341
Query: 462 XXGHFPTKVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFT---------I 512
                 + + NL N+  L    N  S   P  L   T +  LG+ D ++T         +
Sbjct: 342 V-----SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVNYKANV 394
Query: 513 SIPSTLSSLK-------------SITELDLSRNNLSGHIPQYLENLSF 547
           SIP+T+ ++              S TE D++ N     +P Y   +S+
Sbjct: 395 SIPNTVKNVTGALIAPATISDGGSYTEPDITWN-----LPSYTNEVSY 437

>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX Length = 462

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 115/468 (24%), Positives = 191/468 (40%), Gaps = 111/468 (23%)
Query: 102 LSHCSNLMKFEASNNKLEGEIPVKISNLLMLQILNIAENHLKGQLPASIGNLSALQEIDV 161
           + + +NL +   SNN+L    P+K                          NL+ L +I +
Sbjct: 59  VEYLNNLTQINFSNNQLTDITPLK--------------------------NLTKLVDILM 92
Query: 162 RGNRLGGRIPSTISHVRNLISFNVAYNQFSGMIPPIYNISSLQYIFIHTNRFHGSVPLDN 221
             N++    P  ++++ NL    +  NQ +  I P+ N+++L  + + +N       L  
Sbjct: 93  NNNQIADITP--LANLTNLTGLTLFNNQITD-IDPLKNLTNLNRLELSSNTISDISALS- 148
Query: 222 GVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINRNLFSGKVSINFSRLQNLSRLNL 281
              L +L+  S S N +T      L+N T L+ L+I+ N  S  +S+  ++L NL  L  
Sbjct: 149 --GLTSLQQLSFSSNQVTD--LKPLANLTTLERLDISSNKVS-DISV-LAKLTNLESL-- 200
Query: 282 GENNLGTGTTNDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQI 341
                   T N +  IT L   T L+ L L+ N+   +   +LA+L T +T++ + +NQI
Sbjct: 201 ------IATNNQISDITPLGILTNLDELSLNGNQLKDI--GTLASL-TNLTDLDLANNQI 251
Query: 342 SDTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSIQILFLNENFLRGTIPSSXXXXX 401
           S+  P  ++ L  L  L + +NQ++   PLA   L ++  L LNEN L    P S     
Sbjct: 252 SNLAP--LSGLTKLTELKLGANQISNISPLA--GLTALTNLELNENQLEDISPIS----- 302
Query: 402 XXXXXXXEVNNLQGKIPPSNGNCQNLILLTTRKNKLSGIVPRQLLRIITXXXXXXXXXXX 461
                                N +NL  LT   N +S I P   L  +            
Sbjct: 303 ---------------------NLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSD 341
Query: 462 XXGHFPTKVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFT---------I 512
                 + + NL N+  L    N  S   P  L   T +  LG+ D ++T         +
Sbjct: 342 V-----SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVNYKANV 394
Query: 513 SIPSTLSSLK-------------SITELDLSRNNLSGHIPQYLENLSF 547
           SIP+T+ ++              S TE D++ N     +P Y   +S+
Sbjct: 395 SIPNTVKNVTGALIAPATISDGGSYTEPDITWN-----LPSYTNEVSY 437

>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex Length = 466

Iteration: 1
 Score = 62.0 bits (149), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 71/223 (31%), Positives = 107/223 (47%), Gaps = 27/223 (12%)
Query: 157 QEIDVRGNRLGGRIPSTISHVRNLISFNVAYNQFSGMIPPIYNISSLQYIFIHTNRFHGS 216
           Q   ++ +RLG +    + ++ NL   N + NQ +  I P+ N++ L  I ++ N+    
Sbjct: 46  QVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTD-ITPLKNLTKLVDILMNNNQIADI 104
Query: 217 VPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINRNLFSGKVSINFSRLQNL 276
            PL N  NL  L  F+   N +T    D L N TNL  LE++ N  S   ++  S L +L
Sbjct: 105 TPLANLTNLTGLTLFN---NQITDI--DPLKNLTNLNRLELSSNTISDISAL--SGLTSL 157
Query: 277 SRLNLGENNLGTGTTNDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSTTMTEIAI 336
            +L+ G         N +  +  L N T LE LD+ SN+   +    LA L+   + IA 
Sbjct: 158 QQLSFG---------NQVTDLKPLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIAT 206
Query: 337 GSNQISDTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSI 379
            +NQISD  P  +  L NL+ L +  NQL       IG L S+
Sbjct: 207 -NNQISDITP--LGILTNLDELSLNGNQLKD-----IGTLASL 241

>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex Length = 466

Iteration: 1
 Score = 52.4 bits (124), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 115/473 (24%), Positives = 192/473 (40%), Gaps = 112/473 (23%)
Query: 97  KILTDLSHCSNLMKFEASNNKLEGEIPVKISNLLMLQILNIAENHLKGQLPASIGNLSAL 156
           K +  + + +NL +   SNN+L    P+K                          NL+ L
Sbjct: 58  KSIDGVEYLNNLTQINFSNNQLTDITPLK--------------------------NLTKL 91
Query: 157 QEIDVRGNRLGGRIPSTISHVRNLISFNVAYNQFSGMIPPIYNISSLQYIFIHTNRFHGS 216
            +I +  N++    P  ++++ NL    +  NQ +  I P+ N+++L  + + +N     
Sbjct: 92  VDILMNNNQIADITP--LANLTNLTGLTLFNNQITD-IDPLKNLTNLNRLELSSNTISDI 148
Query: 217 VPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINRNLFSGKVSINFSRLQNL 276
             L    +L  L +    GN +T      L+N T L+ L+I+ N  S  +S+  ++L NL
Sbjct: 149 SALSGLTSLQQLSF----GNQVTD--LKPLANLTTLERLDISSNKVS-DISV-LAKLTNL 200
Query: 277 SRLNLGENNLGTGTTNDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSTTMTEIAI 336
             L          T N +  IT L   T L+ L L+ N+   +   +LA+L T +T++ +
Sbjct: 201 ESL--------IATNNQISDITPLGILTNLDELSLNGNQLKDI--GTLASL-TNLTDLDL 249
Query: 337 GSNQISDTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSIQILFLNENFLRGTIPSS 396
            +NQIS+  P  ++ L  L  L + +NQ++   PLA   L ++  L LNEN L    P S
Sbjct: 250 ANNQISNLAP--LSGLTKLTELKLGANQISNISPLA--GLTALTNLELNENQLEDISPIS 305
Query: 397 XXXXXXXXXXXXEVNNLQGKIPPSNGNCQNLILLTTRKNKLSGIVPRQLLRIITXXXXXX 456
                                     N +NL  LT   N +S I P   L  +       
Sbjct: 306 --------------------------NLKNLTYLTLYFNNISDISPVSSLTKLQRLFFAN 339
Query: 457 XXXXXXXGHFPTKVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFT----- 511
                      + + NL N+  L    N  S   P  L   T +  LG+ D ++T     
Sbjct: 340 NKVSDV-----SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVN 392
Query: 512 ----ISIPSTLSSLK-------------SITELDLSRNNLSGHIPQYLENLSF 547
               +SIP+T+ ++              S TE D++ N     +P Y   +S+
Sbjct: 393 YKANVSIPNTVKNVTGALIAPATISDGGSYTEPDITWN-----LPSYTNEVSY 440

>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human) Recognition Complex Length = 466

Iteration: 1
 Score = 62.0 bits (149), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 71/223 (31%), Positives = 107/223 (47%), Gaps = 27/223 (12%)
Query: 157 QEIDVRGNRLGGRIPSTISHVRNLISFNVAYNQFSGMIPPIYNISSLQYIFIHTNRFHGS 216
           Q   ++ +RLG +    + ++ NL   N + NQ +  I P+ N++ L  I ++ N+    
Sbjct: 47  QVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTD-ITPLKNLTKLVDILMNNNQIADI 105
Query: 217 VPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINRNLFSGKVSINFSRLQNL 276
            PL N  NL  L  F+   N +T    D L N TNL  LE++ N  S   ++  S L +L
Sbjct: 106 TPLANLTNLTGLTLFN---NQITDI--DPLKNLTNLNRLELSSNTISDISAL--SGLTSL 158
Query: 277 SRLNLGENNLGTGTTNDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSTTMTEIAI 336
            +L+ G         N +  +  L N T LE LD+ SN+   +    LA L+   + IA 
Sbjct: 159 QQLSFG---------NQVTDLKPLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIAT 207
Query: 337 GSNQISDTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSI 379
            +NQISD  P  +  L NL+ L +  NQL       IG L S+
Sbjct: 208 -NNQISDITP--LGILTNLDELSLNGNQLKD-----IGTLASL 242

>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human) Recognition Complex Length = 466

Iteration: 1
 Score = 52.0 bits (123), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 114/468 (24%), Positives = 190/468 (40%), Gaps = 112/468 (23%)
Query: 102 LSHCSNLMKFEASNNKLEGEIPVKISNLLMLQILNIAENHLKGQLPASIGNLSALQEIDV 161
           + + +NL +   SNN+L    P+K                          NL+ L +I +
Sbjct: 64  VEYLNNLTQINFSNNQLTDITPLK--------------------------NLTKLVDILM 97
Query: 162 RGNRLGGRIPSTISHVRNLISFNVAYNQFSGMIPPIYNISSLQYIFIHTNRFHGSVPLDN 221
             N++    P  ++++ NL    +  NQ +  I P+ N+++L  + + +N       L  
Sbjct: 98  NNNQIADITP--LANLTNLTGLTLFNNQITD-IDPLKNLTNLNRLELSSNTISDISALSG 154
Query: 222 GVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINRNLFSGKVSINFSRLQNLSRLNL 281
             +L  L +    GN +T      L+N T L+ L+I+ N  S  +S+  ++L NL  L  
Sbjct: 155 LTSLQQLSF----GNQVTD--LKPLANLTTLERLDISSNKVS-DISV-LAKLTNLESL-- 204
Query: 282 GENNLGTGTTNDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQI 341
                   T N +  IT L   T L+ L L+ N+   +   +LA+L T +T++ + +NQI
Sbjct: 205 ------IATNNQISDITPLGILTNLDELSLNGNQLKDI--GTLASL-TNLTDLDLANNQI 255
Query: 342 SDTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSIQILFLNENFLRGTIPSSXXXXX 401
           S+  P  ++ L  L  L + +NQ++   PLA   L ++  L LNEN L    P S     
Sbjct: 256 SNLAP--LSGLTKLTELKLGANQISNISPLA--GLTALTNLELNENQLEDISPIS----- 306
Query: 402 XXXXXXXEVNNLQGKIPPSNGNCQNLILLTTRKNKLSGIVPRQLLRIITXXXXXXXXXXX 461
                                N +NL  LT   N +S I P   L  +            
Sbjct: 307 ---------------------NLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSD 345
Query: 462 XXGHFPTKVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFT---------I 512
                 + + NL N+  L    N  S   P  L   T +  LG+ D ++T         +
Sbjct: 346 V-----SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVNYKANV 398
Query: 513 SIPSTLSSLK-------------SITELDLSRNNLSGHIPQYLENLSF 547
           SIP+T+ ++              S TE D++ N     +P Y   +S+
Sbjct: 399 SIPNTVKNVTGALIAPATISDGGSYTEPDITWN-----LPSYTNEVSY 441

>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria Monocytogenes Str. 4b F2365 At 1.91 A Resolution Length = 347

Iteration: 1
 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 90/371 (24%), Positives = 155/371 (41%), Gaps = 78/371 (21%)
Query: 25  TGVTCGHRRQRVTGLDLRHQSVGGVLS-PFVGNLNFLRSINLPNNSFRGKIPHEVGNLFR 83
           T V      + +T L +  + V  +    ++ NL +L   NL  N      P  + NL +
Sbjct: 35  TDVVTQEELESITKLVVAGEKVASIQGIEYLTNLEYL---NLNGNQITDISP--LSNLVK 89
Query: 84  LQNLTLTNNYFLGKILTDLSHCSNLMKFEASNNKLEGEIPVKISNLLMLQILNIAENHLK 143
           L NL +  N      ++ L + +NL +   + + +    P  ++NL     LN+  NH  
Sbjct: 90  LTNLYIGTNKITD--ISALQNLTNLRELYLNEDNISDISP--LANLTKXYSLNLGANHNL 145
Query: 144 GQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVAYNQFSGMIPPIYNISSL 203
             L + + N + L  + V  +++    P  I+++ +L S ++ YNQ    I P+ +++SL
Sbjct: 146 SDL-SPLSNXTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIED-ISPLASLTSL 201
Query: 204 QYIFIHTNRFHGSVPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINRNLFS 263
            Y   + N+     P+                           +N T L  L+I  N  +
Sbjct: 202 HYFTAYVNQITDITPV---------------------------ANXTRLNSLKIGNNKIT 234
Query: 264 GKVSINFSRLQNLSRLNLGENNLGTGTTNDLDFITLLTNCTKLEVLDLHSNRFGGVLPFS 323
                + S L NLS+L   E  +GT   +D++ +    + TKL+ L+             
Sbjct: 235 -----DLSPLANLSQLTWLE--IGTNQISDINAVK---DLTKLKXLN------------- 271
Query: 324 LANLSTTMTEIAIGSNQISDTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSIQILF 383
                       +GSNQISD    V+ NL  LN+L + +NQL       IG L ++  LF
Sbjct: 272 ------------VGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDXEVIGGLTNLTTLF 317
Query: 384 LNENFLRGTIP 394
           L++N +    P
Sbjct: 318 LSQNHITDIRP 328

>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte Receptors Of Jawless Vertebrates By Module Engineering Length = 272

Iteration: 1
 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 56/200 (28%), Positives = 81/200 (40%), Gaps = 9/200 (4%)
Query: 225 LPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINRNLFSGKVSINFSRLQNLSRLNLGEN 284
           LPN+RY ++ GN L      +L   TNL  L +  N      +  F +L NL  L L EN
Sbjct: 62  LPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVEN 119
Query: 285 NLGTGTTNDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQISDT 344
            L +      D +T LT       L+L  N+    LP  + +  T +TE+ +  NQ+   
Sbjct: 120 QLQSLPDGVFDKLTNLT------YLNLAHNQLQS-LPKGVFDKLTNLTELDLSYNQLQSL 172
Query: 345 IPDVIANLVNLNALGVESNQLAGTIPLAIGELKSIQILFLNENFLRGTIPSSXXXXXXXX 404
              V   L  L  L +  NQL          L S+Q ++L++N    T P          
Sbjct: 173 PEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGIRYLSEWIN 232
Query: 405 XXXXEVNNLQGKIPPSNGNC 424
                V N  G + P +  C
Sbjct: 233 KHSGVVRNSAGSVAPDSAKC 252

>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g And T399i In Complex With Md-2 And Lps Length = 635

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/98 (36%), Positives = 51/98 (52%), Gaps = 3/98 (3%)
Query: 472 NLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTIS-IPSTLSSLKSITELDLS 530
           +L+NL+ LDIS             G +SLE L M  NSF  + +P   + L+++T LDLS
Sbjct: 443 SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS 502
Query: 531 RNNLSGHIPQYLENLSFLLFLNMSYNHFEG--KVPIEC 566
           +  L    P    +LS L  LNMS+N+F      P +C
Sbjct: 503 QCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKC 540

>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps Ra Complex Length = 605

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 36/98 (36%), Positives = 51/98 (52%), Gaps = 3/98 (3%)
Query: 472 NLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTIS-IPSTLSSLKSITELDLS 530
           +L+NL+ LDIS             G +SLE L M  NSF  + +P   + L+++T LDLS
Sbjct: 419 SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS 478
Query: 531 RNNLSGHIPQYLENLSFLLFLNMSYNHFEG--KVPIEC 566
           +  L    P    +LS L  LNMS+N+F      P +C
Sbjct: 479 QCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKC 516

>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And Hagfish Vlrb.61 Length = 306

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 36/98 (36%), Positives = 51/98 (52%), Gaps = 3/98 (3%)
Query: 472 NLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTIS-IPSTLSSLKSITELDLS 530
           +L+NL+ LDIS             G +SLE L M  NSF  + +P   + L+++T LDLS
Sbjct: 124 SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS 183
Query: 531 RNNLSGHIPQYLENLSFLLFLNMSYNHFEG--KVPIEC 566
           +  L    P    +LS L  LNMS+N+F      P +C
Sbjct: 184 QCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKC 221

>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into An Electron Microscopy Single Particle Reconstruction Length = 844

Iteration: 1
 Score = 45.4 bits (106), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 87/399 (21%), Positives = 158/399 (39%), Gaps = 52/399 (13%)
Query: 34  QRVTGLDLRHQSVGGV-LSPFVGNLNFLRSINLPNNSFRGKIPHEVGNL--FRLQNLTLT 90
           + +T LDL    +  + L P  G LN L+SI+  +N       HE+  L    L   +L 
Sbjct: 123 KALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLA 182
Query: 91  NNYFLGKILTDLSHCSNLMK------FEASNNKLEGEIPVKISNLL-MLQILN-IAENHL 142
            N    ++  D   C N  +       + S N    +I    SN +   Q  + I  +H+
Sbjct: 183 ANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHI 242
Query: 143 KGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHV------------------RNLISFN 184
            G   A  G    +++ D   N   G   S++ H+                  ++L   N
Sbjct: 243 MG---AGFG-FHNIKDPD--QNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLN 296
Query: 185 VAYNQFSGMI-PPIYNISSLQYIFIHTNRFHGSVPLDNGVNLPNLRYFSISGNNLTGSLQ 243
           +AYN+ + +     Y + +LQ + +  N   G +   N   LP + Y  +  N++     
Sbjct: 297 LAYNKINKIADEAFYGLDNLQVLNLSYNLL-GELYSSNFYGLPKVAYIDLQKNHIAIIQD 355
Query: 244 DSLSNATNLQGLEINRNLFSG--------KVSINFSRLQNLSRLNLGEN--NLGTGTTND 293
            +      LQ L++  N  +          + ++ ++L  L ++NL  N  +L      +
Sbjct: 356 QTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLEN 415
Query: 294 LDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQI-----SDTIPDV 348
           LD +  L     L++L L+ NRF         + + ++ ++ +G N +     ++   DV
Sbjct: 416 LDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDV 475
Query: 349 IANLVNLNALGVESNQLAGTIPLAIGELKSIQILFLNEN 387
              L +L  L +  N L    P     L +++ L LN N
Sbjct: 476 FEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSN 514

>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors B59 Length = 208

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 68/159 (42%), Gaps = 15/159 (9%)
Query: 270 FSRLQNLSRLNLGENNLGT---GTTNDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLAN 326
           F  L +L++L LG N L +   G  N L         T L  L+L +N+    LP  + +
Sbjct: 48  FDELTSLTQLYLGGNKLQSLPNGVFNKL---------TSLTYLNLSTNQLQS-LPNGVFD 97
Query: 327 LSTTMTEIAIGSNQISDTIPD-VIANLVNLNALGVESNQLAGTIPLAIGELKSIQILFLN 385
             T + E+A+ +NQ+  ++PD V   L  L  L +  NQL          L S+Q ++L+
Sbjct: 98  KLTQLKELALNTNQL-QSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLH 156
Query: 386 ENFLRGTIPSSXXXXXXXXXXXXEVNNLQGKIPPSNGNC 424
           +N    T P               V N  G + P +  C
Sbjct: 157 DNPWDCTCPGIRYLSEWINKHSGVVRNSAGSVAPDSAKC 195

>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And Hagfish Vlrb.61 Length = 570

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 52/215 (24%), Positives = 96/215 (44%), Gaps = 24/215 (11%)
Query: 184 NVAYNQFSGMIPPIYNISSLQYIFIHTNRFHGSVPLDNGVNLPNLRYFSISGNNLT--GS 241
           N  + QF     P   + SL+ +   +N+   +    + V+LP+L +  +S N L+  G 
Sbjct: 313 NCKFGQF-----PTLKLKSLKRLTFTSNKGGNAF---SEVDLPSLEFLDLSRNGLSFKGC 364
Query: 242 LQDSLSNATNLQGLEINRNLFSGKVSI--NFSRLQNLSRLNLGENNLGTGTTNDLDFITL 299
              S    T+L+ L+++   F+G +++  NF  L+ L  L+   +NL     ++      
Sbjct: 365 CSQSDFGTTSLKYLDLS---FNGVITMSSNFLGLEQLEHLDFQHSNLKQ--MSEFSVFLS 419
Query: 300 LTNCTKLEVLDLHSN-RFGGVLPFSLANLSTTMTEIAIGSNQISDT-IPDVIANLVNLNA 357
           L N   L++   H+   F G+      N  +++  + +  N   +  +PD+   L NL  
Sbjct: 420 LRNLIYLDISHTHTRVAFNGIF-----NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTF 474
Query: 358 LGVESNQLAGTIPLAIGELKSIQILFLNENFLRGT 392
           L +   QL    P A   L S+Q+L +  N L+  
Sbjct: 475 LDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSV 509

>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And Hagfish Vlrb.61 Length = 570

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 34/93 (36%), Positives = 48/93 (51%), Gaps = 2/93 (2%)
Query: 472 NLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTIS-IPSTLSSLKSITELDLS 530
           +L+NL+ LDIS             G +SLE L M  NSF  + +P   + L+++T LDLS
Sbjct: 419 SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS 478
Query: 531 RNNLSGHIPQYLENLSFLLFLNMSYNHFEGKVP 563
           +  L    P    +LS L  LNM+ N  +  VP
Sbjct: 479 QCQLEQLSPTAFNSLSSLQVLNMASNQLKS-VP 510

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	566
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-130
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-120
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-92
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	7e-60
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	8e-71
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-60
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-52
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-50
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	7e-49
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	4e-39
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	7e-33
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-69
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-65
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-48
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-47
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-47
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	6e-42
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	9e-20
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-06
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-04
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-69
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	9e-64
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-42
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-38
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-66
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-65
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-63
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-53
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-30
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-28
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-25
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-06
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-62
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-46
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-41
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-37
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-58
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	7e-55
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-30
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-56
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-14
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-43
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-40
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-36
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	7e-40
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	7e-30
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-29
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-16
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	6e-37
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-36
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-35
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-32
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	9e-12
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	8e-08
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-36
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	6e-35
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-28
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	7e-33
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-32
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-26
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	9e-19
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-32
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	5e-31
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	8e-30
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-22
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-22
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-11
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-07
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-28
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	5e-25
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-24
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-22
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-05
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-28
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-25
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	9e-22
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-20
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	5e-14
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-12
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	9e-28
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-24
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-18
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-15
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-12
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-05
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-27
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-25
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-24
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-19
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-25
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-24
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-23
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-20
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-19
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-19
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-25
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	8e-24
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-22
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-24
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	5e-22
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-18
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-17
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	6e-15
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	9e-15
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-12
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-23
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-22
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	5e-20
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-15
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-08
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	4e-22
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-16
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	7e-15
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-09
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-20
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-20
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-18
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-16
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-20
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	4e-16
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-13
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	9e-13
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-07
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	5e-20
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-17
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-17
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	4e-11
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-19
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	6e-17
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	6e-13
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-18
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	4e-18
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-17
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-17
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-16
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-15
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	7e-15
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-18
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-16
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-15
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	5e-11
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	4e-05
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	6e-18
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	6e-18
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-17
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-16
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	4e-13
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	7e-18
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-15
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	9e-15
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-14
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	5e-17
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	5e-16
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-07
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	6e-16
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-15
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-14
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-11
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	4e-15
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-14
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	4e-13
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	4e-13
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-10
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	5e-15
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	7e-14
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-11
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-08
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	4e-14
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	6e-14
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-13
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	5e-13
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-12
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-07
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-13
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-13
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-12
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	6e-12
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	5e-11
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-09
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	4e-07
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	7e-13
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	3e-12
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	5e-10
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	4e-07
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	3e-12
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	3e-11
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	3e-11
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	4e-11
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	3e-10
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-08
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	3e-05
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	4e-12
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	4e-10
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	5e-07
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	5e-12
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	6e-12
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-11
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-08
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-11
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-08
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	3e-07
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-06
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	6e-11
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	9e-11
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	4e-08
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-06
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	3e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-11
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-10
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	3e-10
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	9e-10
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	5e-06
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	3e-10
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-09
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-05
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	5e-09
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	4e-08
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	1e-06
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-06
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	1e-05
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	1e-04
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	7e-09
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	9e-08
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-07
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-07
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-08
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	4e-08
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	8e-07
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-06
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	9e-04
3m19_A	251	Variable lymphocyte receptor A diversity region; a	1e-08
3m19_A	251	Variable lymphocyte receptor A diversity region; a	1e-06
3m19_A	251	Variable lymphocyte receptor A diversity region; a	3e-05
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-07
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-07
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-06
3e6j_A	229	Variable lymphocyte receptor diversity region; var	3e-07
3e6j_A	229	Variable lymphocyte receptor diversity region; var	1e-05
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	7e-07
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	4e-04
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	8e-07
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	9e-06
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	8e-05
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	5e-04
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	8e-04
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	8e-07
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	9e-07
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-06
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	7e-05
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-04
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	3e-04
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	1e-06
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	2e-06
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	4e-06
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	3e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-05
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	3e-05
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	3e-05
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	4e-05
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	7e-04
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	1e-04
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	1e-04
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	4e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-04
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	4e-04
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	5e-04
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	6e-04
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	6e-04
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	7e-04

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  398 bits (1025), Expect = e-130
 Identities = 149/532 (28%), Positives = 247/532 (46%), Gaps = 22/532 (4%)

Query: 39  LDLRHQSVGGVLSPFVGNLNFLRSINLPNNSFRGKIPHEVGNLFRLQNLTLTNNYFLGKI 98
           LD+   +    + PF+G+ + L+ +++  N   G     +     L+ L +++N F+G I
Sbjct: 205 LDVSSNNFSTGI-PFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPI 263

Query: 99  LTDLSHCSNLMKFEASNNKLEGEIPVKIS-NLLMLQILNIAENHLKGQLPASIGNLSALQ 157
                   +L     + NK  GEIP  +S     L  L+++ NH  G +P   G+ S L+
Sbjct: 264 --PPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLE 321

Query: 158 EIDVRGNRLGGRIP-STISHVRNLISFNVAYNQFSGMIPP-IYNIS-SLQYIFIHTNRFH 214
            + +  N   G +P  T+  +R L   ++++N+FSG +P  + N+S SL  + + +N F 
Sbjct: 322 SLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFS 381

Query: 215 GSVPLDNGVN-LPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINRNLFSGKVSINFSRL 273
           G +  +   N    L+   +  N  TG +  +LSN + L  L ++ N  SG +  +   L
Sbjct: 382 GPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSL 441

Query: 274 QNLSRLNLGENNLGTGTTNDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSTTMTE 333
             L  L L  N L  G          L     LE L L  N   G +P  L+N  T +  
Sbjct: 442 SKLRDLKLWLNML-EGE-----IPQELMYVKTLETLILDFNDLTGEIPSGLSNC-TNLNW 494

Query: 334 IAIGSNQISDTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSIQILFLNENFLRGTI 393
           I++ +N+++  IP  I  L NL  L + +N  +G IP  +G+ +S+  L LN N   GTI
Sbjct: 495 ISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTI 554

Query: 394 PSSLGNLTLLTQLILEVNNLQGKIPPSNGNCQNL--ILLTTRKNKLSGIVPRQLLRIITL 451
           P+++   +      +  N + GK      N              +  GI   QL R+ T 
Sbjct: 555 PAAMFKQSGK----IAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTR 610

Query: 452 SVLLDLSDNLLSGHFPTKVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFT 511
           +   +++  +  GH      N  +++ LD+S NM SG IP  +G    L  L +  N  +
Sbjct: 611 NPC-NITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDIS 669

Query: 512 ISIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLLFLNMSYNHFEGKVP 563
            SIP  +  L+ +  LDLS N L G IPQ +  L+ L  +++S N+  G +P
Sbjct: 670 GSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP 721

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  371 bits (954), Expect = e-120
 Identities = 160/578 (27%), Positives = 256/578 (44%), Gaps = 53/578 (9%)

Query: 2   KSQLQDPLGVTSSWNNSINLCQWTGVTCGHRRQRVTGLDLRH---QSVGGVLSPFVGNLN 58
           K  L D   +   W+++ N C + GVTC  R  +VT +DL           +S  + +L 
Sbjct: 21  KDVLPDK-NLLPDWSSNKNPCTFDGVTC--RDDKVTSIDLSSKPLNVGFSAVSSSLLSLT 77

Query: 59  FLRSINLPNNSFRGKIPHEVGNLFRLQNLTLTNNYFLGKI--LTDLSHCSNLMKFEASNN 116
            L S+ L N+   G +         L +L L+ N   G +  LT L  CS L     S+N
Sbjct: 78  GLESLFLSNSHINGSVS-GFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSN 136

Query: 117 KLEGEIPV-KISNLLMLQILNIAENHLKGQLPASI---GNLSALQEIDVRGNRLGGRIPS 172
            L+    V     L  L++L+++ N + G              L+ + + GN++ G +  
Sbjct: 137 TLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD- 195

Query: 173 TISHVRNLISFNVAYNQFSGMIPPIYNISSLQYIFIHTNRFHGSVPLDNGVNLPNLRYFS 232
            +S   NL   +V+ N FS  IP + + S+LQ++ I  N+  G            L+  +
Sbjct: 196 -VSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAIS-TCTELKLLN 253

Query: 233 ISGNNLTGSLQDSLSNATNLQGLEINRNLFSGKVSINFSRLQNLSRLNLGENNLGTGTTN 292
           IS N   G +        +LQ L +  N F+G++                          
Sbjct: 254 ISSNQFVGPI--PPLPLKSLQYLSLAENKFTGEIPDF----------------------- 288

Query: 293 DLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQISDTIP-DVIAN 351
                 L   C  L  LDL  N F G +P    + S  +  +A+ SN  S  +P D +  
Sbjct: 289 ------LSGACDTLTGLDLSGNHFYGAVPPFFGSCSL-LESLALSSNNFSGELPMDTLLK 341

Query: 352 LVNLNALGVESNQLAGTIPLAIGELK-SIQILFLNENFLRGTIPSSLGNLTL--LTQLIL 408
           +  L  L +  N+ +G +P ++  L  S+  L L+ N   G I  +L       L +L L
Sbjct: 342 MRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYL 401

Query: 409 EVNNLQGKIPPSNGNCQNLILLTTRKNKLSGIVPRQLLRIITLSVLLDLSDNLLSGHFPT 468
           + N   GKIPP+  NC  L+ L    N LSG +P  L  +  L  L  L  N+L G  P 
Sbjct: 402 QNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDL-KLWLNMLEGEIPQ 460

Query: 469 KVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTISIPSTLSSLKSITELD 528
           ++  +K L +L +  N  +GEIP+ L  CT+L ++ + +N  T  IP  +  L+++  L 
Sbjct: 461 ELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILK 520

Query: 529 LSRNNLSGHIPQYLENLSFLLFLNMSYNHFEGKVPIEC 566
           LS N+ SG+IP  L +   L++L+++ N F G +P   
Sbjct: 521 LSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAM 558

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  299 bits (768), Expect = 1e-92
 Identities = 136/510 (26%), Positives = 219/510 (42%), Gaps = 47/510 (9%)

Query: 39  LDLRHQSVGGVLSPFVGNLNFLRSINLPNNSFRGKIPHEV-GNLFRLQNLTLTNNYFLGK 97
           L++      G + P    L  L+ ++L  N F G+IP  + G    L  L L+ N+F G 
Sbjct: 252 LNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGA 309

Query: 98  ILTDLSHCSNLMKFEASNNKLEGEIPVK-ISNLLMLQILNIAENHLKGQLPASIGNLSA- 155
           +      CS L     S+N   GE+P+  +  +  L++L+++ N   G+LP S+ NLSA 
Sbjct: 310 VPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSAS 369

Query: 156 LQEIDVRGNRLGGRIPSTISHV--RNLISFNVAYNQFSGMIPP-IYNISSLQYIFIHTNR 212
           L  +D+  N   G I   +       L    +  N F+G IPP + N S L  + +  N 
Sbjct: 370 LLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNY 429

Query: 213 FHGSVPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINRNLFSGKVSINFSR 272
             G++P   G +L  LR   +  N L G +   L     L+ L ++ N  +G++    S 
Sbjct: 430 LSGTIPSSLG-SLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSN 488

Query: 273 LQNLSRLNLGENNLGTGTTNDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSTTMT 332
             NL+ ++L  N L TG          +     L +L L +N F G +P  L +  + + 
Sbjct: 489 CTNLNWISLSNNRL-TGE-----IPKWIGRLENLAILKLSNNSFSGNIPAELGDCRS-LI 541

Query: 333 EIAIGSNQISDTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSIQILFLNENFLR-- 390
            + + +N  + TIP  +          + +N +AG   + I      +      N L   
Sbjct: 542 WLDLNTNLFNGTIPAAMFKQSGK----IAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQ 597

Query: 391 GTIPSSLGNLTLLTQLILEVNNLQGKIPPSNGNCQNLILLTTRKNKLSGIVPRQLLRIIT 450
           G     L  L+      +      G   P+  N  +++ L    N LSG +P+++  +  
Sbjct: 598 GIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPY 657

Query: 451 LSVLLDLSDNLLSGHFPTKVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSF 510
           L  +L+L  N +SG  P +VG+L+ L  LD+SSN   G IP  +   T L          
Sbjct: 658 L-FILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTE-------- 708

Query: 511 TISIPSTLSSLKSITELDLSRNNLSGHIPQ 540
                           +DLS NNLSG IP+
Sbjct: 709 ----------------IDLSNNNLSGPIPE 722

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  211 bits (539), Expect = 7e-60
 Identities = 95/383 (24%), Positives = 156/383 (40%), Gaps = 57/383 (14%)

Query: 39  LDLRHQSVGGVLSPFVGNLNFLRSINLPNNSFRGKIPHEVGNLFRLQNLTLTNNYFLGKI 98
           L L++    G + P + N + L S++L  N   G IP  +G+L +L++L L  N   G+I
Sbjct: 399 LYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEI 458

Query: 99  LTDLSHCSNLMKFEASNNKLEGEIPVKISNLLMLQILNIAENHLKGQLPASIGNLSALQE 158
             +L +   L       N L GEIP  +SN   L  ++++ N L G++P  IG L  L  
Sbjct: 459 PQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAI 518

Query: 159 IDVRGNRLGGRIPSTISHVRNLISFNVAYNQFSGMIPPIYNISSLQYIFIHTNRFHGSVP 218
           + +  N   G IP+ +   R+LI  ++  N F+G IP                       
Sbjct: 519 LKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMF------------------- 559

Query: 219 LDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINRNLFSGKVSINFSRLQNLSR 278
                         I+ N + G     + N    +      NL   +   +         
Sbjct: 560 -----KQSGK----IAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQ------- 603

Query: 279 LNLGENNLGTGTTNDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSTTMTEIAIGS 338
                                L   +     ++ S  +GG    +  N   +M  + +  
Sbjct: 604 ---------------------LNRLSTRNPCNITSRVYGGHTSPTFDNNG-SMMFLDMSY 641

Query: 339 NQISDTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSIQILFLNENFLRGTIPSSLG 398
           N +S  IP  I ++  L  L +  N ++G+IP  +G+L+ + IL L+ N L G IP ++ 
Sbjct: 642 NMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMS 701

Query: 399 NLTLLTQLILEVNNLQGKIPPSN 421
            LT+LT++ L  NNL G IP   
Sbjct: 702 ALTMLTEIDLSNNNLSGPIPEMG 724

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  228 bits (585), Expect = 8e-71
 Identities = 81/277 (29%), Positives = 125/277 (45%), Gaps = 10/277 (3%)

Query: 294 LDFITLLTNCTKL----EVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQIS--DTIPD 347
           L     L N T L       D  +  + GVL  +    +  +  + +    +     IP 
Sbjct: 12  LQIKKDLGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQ-TYRVNNLDLSGLNLPKPYPIPS 70

Query: 348 VIANLVNLNALGVES-NQLAGTIPLAIGELKSIQILFLNENFLRGTIPSSLGNLTLLTQL 406
            +ANL  LN L +   N L G IP AI +L  +  L++    + G IP  L  +  L  L
Sbjct: 71  SLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL 130

Query: 407 ILEVNNLQGKIPPSNGNCQNLILLTTRKNKLSGIVPRQLLRIITLSVLLDLSDNLLSGHF 466
               N L G +PPS  +  NL+ +T   N++SG +P        L   + +S N L+G  
Sbjct: 131 DFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKI 190

Query: 467 PTKVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTISIPSTLSSLKSITE 526
           P    NL NL  +D+S NM  G+     G   + + + +  NS    +   +   K++  
Sbjct: 191 PPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNG 248

Query: 527 LDLSRNNLSGHIPQYLENLSFLLFLNMSYNHFEGKVP 563
           LDL  N + G +PQ L  L FL  LN+S+N+  G++P
Sbjct: 249 LDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  201 bits (514), Expect = 3e-60
 Identities = 76/293 (25%), Positives = 120/293 (40%), Gaps = 14/293 (4%)

Query: 2   KSQLQDPLGVTSSWNNSINLCQ--WTGVTCGHRRQ--RVTGLDLRHQSVGGV--LSPFVG 55
           K  L +P    SSW  + + C   W GV C    Q  RV  LDL   ++     +   + 
Sbjct: 15  KKDLGNP-TTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLA 73

Query: 56  NLNFLRSINLPN-NSFRGKIPHEVGNLFRLQNLTLTNNYFLGKILTDLSHCSNLMKFEAS 114
           NL +L  + +   N+  G IP  +  L +L  L +T+    G I   LS    L+  + S
Sbjct: 74  NLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFS 133

Query: 115 NNKLEGEIPVKISNLLMLQILNIAENHLKGQLPASIGNLSAL-QEIDVRGNRLGGRIPST 173
            N L G +P  IS+L  L  +    N + G +P S G+ S L   + +  NRL G+IP T
Sbjct: 134 YNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPT 193

Query: 174 ISHVRNLISFNVAYNQFSGMIPP-IYNISSLQYIFIHTNRFHGSVPLDNGVNLPNLRYFS 232
            +++ NL   +++ N   G       +  + Q I +  N     +         NL    
Sbjct: 194 FANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG--KVGLSKNLNGLD 250

Query: 233 ISGNNLTGSLQDSLSNATNLQGLEINRNLFSGKVSINFSRLQNLSRLNLGENN 285
           +  N + G+L   L+    L  L ++ N   G++      LQ         N 
Sbjct: 251 LRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYANNK 302

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  181 bits (461), Expect = 1e-52
 Identities = 75/301 (24%), Positives = 121/301 (40%), Gaps = 15/301 (4%)

Query: 245 SLSNATNLQ----GLEINRNLFSGKVSINFSRLQNLSRLNLGENNLGTGTTNDLDFITLL 300
            L N T L       +     + G +    ++   ++ L+L   NL          +   
Sbjct: 17  DLGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNL-PKPYPIPSSLA-- 73

Query: 301 TNCTKLEVLDLHS-NRFGGVLPFSLANLSTTMTEIAIGSNQISDTIPDVIANLVNLNALG 359
            N   L  L +   N   G +P ++A L+  +  + I    +S  IPD ++ +  L  L 
Sbjct: 74  -NLPYLNFLYIGGINNLVGPIPPAIAKLTQ-LHYLYITHTNVSGAIPDFLSQIKTLVTLD 131

Query: 360 VESNQLAGTIPLAIGELKSIQILFLNENFLRGTIPSSLGNLT-LLTQLILEVNNLQGKIP 418
              N L+GT+P +I  L ++  +  + N + G IP S G+ + L T + +  N L GKIP
Sbjct: 132 FSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIP 191

Query: 419 PSNGNCQNLILLTTRKNKLSGIVPRQLLRIITLSVLLDLSDNLLSGHFPTKVGNLKNLVS 478
           P+  N  NL  +   +N L G              +  L+ N L+     KVG  KNL  
Sbjct: 192 PTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKI-HLAKNSLAFDLG-KVGLSKNLNG 248

Query: 479 LDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTISIPSTLSSLKSITELDLSRNNLSGHI 538
           LD+ +N   G +P  L     L  L +  N+    IP    +L+       + N      
Sbjct: 249 LDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYANNKCLCGS 307

Query: 539 P 539
           P
Sbjct: 308 P 308

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  175 bits (445), Expect = 2e-50
 Identities = 71/293 (24%), Positives = 122/293 (41%), Gaps = 22/293 (7%)

Query: 145 QLPASIGNLSALQ----EIDVRGNRLGGRIPSTISHVRNLISFNVAYNQFSG--MIPP-I 197
           Q+   +GN + L       D       G +  T +    + + +++         IP  +
Sbjct: 13  QIKKDLGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSL 72

Query: 198 YNISSLQYIFIH-TNRFHGSVPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLE 256
            N+  L +++I   N   G +P      L  L Y  I+  N++G++ D LS    L  L+
Sbjct: 73  ANLPYLNFLYIGGINNLVGPIPPAIA-KLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLD 131

Query: 257 INRNLFSGKVSINFSRLQNLSRLNLGENNLGTGTTNDLDFI-TLLTNCTKL-EVLDLHSN 314
            + N  SG +  + S L NL  +    N + +G       I     + +KL   + +  N
Sbjct: 132 FSYNALSGTLPPSISSLPNLVGITFDGNRI-SGA------IPDSYGSFSKLFTSMTISRN 184

Query: 315 RFGGVLPFSLANLSTTMTEIAIGSNQISDTIPDVIANLVNLNALGVESNQLAGTIPLAIG 374
           R  G +P + ANL+  +  + +  N +      +  +  N   + +  N LA  +   +G
Sbjct: 185 RLTGKIPPTFANLN--LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVG 241

Query: 375 ELKSIQILFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSNGNCQNL 427
             K++  L L  N + GT+P  L  L  L  L +  NNL G+IP   GN Q  
Sbjct: 242 LSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRF 293

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  171 bits (435), Expect = 7e-49
 Identities = 73/321 (22%), Positives = 122/321 (38%), Gaps = 41/321 (12%)

Query: 182 SFNVAYNQFSGMIP-PIYNISSLQYIFIHTNRFHGSVPLDNGV-NLPNLRYFSISG-NNL 238
           + +     + G++         +  + +         P+ + + NLP L +  I G NNL
Sbjct: 30  TTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNL 89

Query: 239 TGSLQDSLSNATNLQGLEINRNLFSGKVSINFSRLQNLSRLNLGENNLGTGTTNDLDFI- 297
            G +  +++  T L  L I     SG +    S+++ L  L+   N L +GT      + 
Sbjct: 90  VGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNAL-SGT------LP 142

Query: 298 TLLTNCTKLEVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQISDTIPDVIANLVNLNA 357
             +++   L  +    NR  G +P S  + S   T + I  N+++  IP   ANL NL  
Sbjct: 143 PSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAF 201

Query: 358 LGVESNQLAGTIPLAIGELKSIQILFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKI 417
           + +  N L G   +  G  K+ Q + L +N L   +   +G    L  L L  N + G +
Sbjct: 202 VDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTL 260

Query: 418 PPSNGNCQNLILLTTRKNKLSGIVPRQLLRIITLSVLLDLSDNLLSGHFPTKVGNLKNLV 477
           P      + L  L                         ++S N L G  P   GNL+   
Sbjct: 261 PQGLTQLKFLHSL-------------------------NVSFNNLCGEIPQG-GNLQRFD 294

Query: 478 SLDISSNMFSGEIPTTLGGCT 498
               ++N      P  L  CT
Sbjct: 295 VSAYANNKCLCGSP--LPACT 313

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  144 bits (366), Expect = 4e-39
 Identities = 56/207 (27%), Positives = 85/207 (41%), Gaps = 30/207 (14%)

Query: 363 NQLAGTIPLAIGELKSIQILFLNENFLRGT--IPSSLGNLTLLTQLIL-EVNNLQGKIPP 419
               G +     +   +  L L+   L     IPSSL NL  L  L +  +NNL G IPP
Sbjct: 36  RTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPP 95

Query: 420 SNGNCQNLILLTTRKNKLSGIVPRQLLRIITLSVLLDLSDNLLSGHFPTKVGNLKNLVSL 479
           +      L  L                          ++   +SG  P  +  +K LV+L
Sbjct: 96  AIAKLTQLHYL-------------------------YITHTNVSGAIPDFLSQIKTLVTL 130

Query: 480 DISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTISIPSTLSSLKS-ITELDLSRNNLSGHI 538
           D S N  SG +P ++    +L  +    N  + +IP +  S     T + +SRN L+G I
Sbjct: 131 DFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKI 190

Query: 539 PQYLENLSFLLFLNMSYNHFEGKVPIE 565
           P    NL+ L F+++S N  EG   + 
Sbjct: 191 PPTFANLN-LAFVDLSRNMLEGDASVL 216

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  127 bits (321), Expect = 7e-33
 Identities = 52/184 (28%), Positives = 85/184 (46%), Gaps = 3/184 (1%)

Query: 37  TGLDLRHQSVGGVLSPFVGNLNFLRSINLPNNSFRGKIPHEVGNLFRL-QNLTLTNNYFL 95
             LD  + ++ G L P + +L  L  I    N   G IP   G+  +L  ++T++ N   
Sbjct: 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT 187

Query: 96  GKILTDLSHCSNLMKFEASNNKLEGEIPVKISNLLMLQILNIAENHLKGQLPASIGNLSA 155
           GKI    ++  NL   + S N LEG+  V   +    Q +++A+N L   L   +G    
Sbjct: 188 GKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKN 245

Query: 156 LQEIDVRGNRLGGRIPSTISHVRNLISFNVAYNQFSGMIPPIYNISSLQYIFIHTNRFHG 215
           L  +D+R NR+ G +P  ++ ++ L S NV++N   G IP   N+          N+   
Sbjct: 246 LNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLC 305

Query: 216 SVPL 219
             PL
Sbjct: 306 GSPL 309

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  234 bits (599), Expect = 2e-69
 Identities = 83/543 (15%), Positives = 175/543 (32%), Gaps = 56/543 (10%)

Query: 55  GNLNFLRSINLPNNSFRGKIPHEVGNLFRLQNLTLTNNYFLG----KILTDLSHCSNLMK 110
            +   +  ++L      G++P  +G L  L+ L L ++             +S   +  +
Sbjct: 78  NSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ 137

Query: 111 FEASNNKLEGEIPVKIS--NLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGG 168
            +      +          +   L    I  +  +  +  S        +I    N +  
Sbjct: 138 KQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF 197

Query: 169 RIPSTISHVRNLISFNVAYNQFSGMIPP-IYNISSLQYIFIHTNRFHGSVPLDNGVNLPN 227
            +   +  +  L  F +  + F        +   + +Y      + + +  L    NL +
Sbjct: 198 -VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEY-----AQQYKTEDLKWD-NLKD 250

Query: 228 LRYFSISGNNLTGSLQDSLSNATNLQGLEINRNLFSGKVSI--------NFSRLQNLSRL 279
           L    +        L   L     +Q + +  N       +        +    + +  +
Sbjct: 251 LTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQII 310

Query: 280 NLGENNLGTGTTNDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSN 339
            +G NNL T         T L    KL +L+   N+  G LP +  +    +  + +  N
Sbjct: 311 YIGYNNLKTFPVE-----TSLQKMKKLGMLECLYNQLEGKLP-AFGSE-IKLASLNLAYN 363

Query: 340 QISDTIPDVIANLVNLNALGVESNQLAGTIP--LAIGELKSIQILFLNENFLRG------ 391
           QI++   +       +  L    N+L   IP       +  +  +  + N +        
Sbjct: 364 QITEIPANFCGFTEQVENLSFAHNKL-KYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNF 422

Query: 392 -TIPSSLGNLTLLTQLILEVNNLQGKIPPSNGNCQNLILLTTRKNKLSGIVPRQLLRIIT 450
             +  +      ++ + L  N +             L  +    N L+ I    L     
Sbjct: 423 DPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENE 482

Query: 451 ----LSVL--LDLSDNLLSGHFPT-KVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYL 503
                 +L  +DL  N L+      +   L  LV +D+S N FS   PT     ++L+  
Sbjct: 483 NFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGF 541

Query: 504 GMQD------NSFTISIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLLFLNMSYNH 557
           G+++      N      P  ++   S+T+L +  N++     +   N+S    L++  N 
Sbjct: 542 GIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKITPNIS---VLDIKDNP 598

Query: 558 FEG 560
              
Sbjct: 599 NIS 601

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  223 bits (571), Expect = 2e-65
 Identities = 91/622 (14%), Positives = 171/622 (27%), Gaps = 132/622 (21%)

Query: 12  TSSWNNSINLCQWT---GVTCGHRRQRVTGLDLRHQSVGGVLSPFVGNLNFLRSINLPNN 68
            ++WN +  L  W    GV+      RVTGL L      G +   +G L  L  + L ++
Sbjct: 57  GANWNFNKELDMWGAQPGVSLN-SNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSH 115

Query: 69  SFRG----KIPHEVGNLF--------------------------RLQNLTLTNNYFLGKI 98
             +       P  +                               L    + ++     I
Sbjct: 116 GEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSI 175

Query: 99  LTDLSHCSNLMKFEASNNKLEGEIPVKISNLLMLQILNIAENHLKGQ------------- 145
                      +    +N +   +   +  L  L+   +  +    +             
Sbjct: 176 KKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEY 234

Query: 146 ------LPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVAYNQFSGM------ 193
                       NL  L +++V       ++P+ +  +  +   NVA N+          
Sbjct: 235 AQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDD 294

Query: 194 ---IPPIYNISSLQYIFIHTNRFHGSVPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNAT 250
              +        +Q I+I  N         +   +  L       N L G L  +  +  
Sbjct: 295 WQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKL-PAFGSEI 353

Query: 251 NLQGLEINRNLFSGKVSINFSRLQNLSRLNLGENNLGTGTTNDLDFITLLTNCTKLEVLD 310
            L  L +  N  +   +      + +  L+   N L       +  I    + + +  +D
Sbjct: 354 KLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKY-----IPNIFDAKSVSVMSAID 408

Query: 311 LHSNRFGGVLPFSLANLSTTMTEIAIGSNQISDTIPDVIANLVNLNALGVESNQLAGTIP 370
              N  G V   +                     +       +N++++ + +NQ++    
Sbjct: 409 FSYNEIGSVDGKNFDP------------------LDPTPFKGINVSSINLSNNQISKFPK 450

Query: 371 LAIGELKSIQILFLNENFLRG-------TIPSSLGNLTLLTQLILEVNNLQGKIPPS--N 421
                   +  + L  N L             +  N  LLT + L  N L   +      
Sbjct: 451 ELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTK-LSDDFRA 509

Query: 422 GNCQNLILLTTRKNKLSGIVPRQLLRIITLSVLLDLSDNLLSGHFPTKVGNLKNLVSLDI 481
                L+                          +DLS N  S  FPT+  N   L    I
Sbjct: 510 TTLPYLV-------------------------GIDLSYNSFSK-FPTQPLNSSTLKGFGI 543

Query: 482 ------SSNMFSGEIPTTLGGCTSLEYLGMQDNSFTISIPSTLSSLKSITELDLSRNNLS 535
                   N    E P  +  C SL  L +  N     +   +    +I+ LD+  N   
Sbjct: 544 RNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIR-KVNEKI--TPNISVLDIKDNPNI 600

Query: 536 GHIPQYLENLSFLLFLNMSYNH 557
                Y+          + Y+ 
Sbjct: 601 SIDLSYVCPYIEAGMYMLFYDK 622

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  177 bits (450), Expect = 2e-48
 Identities = 66/406 (16%), Positives = 133/406 (32%), Gaps = 41/406 (10%)

Query: 39  LDLRHQSVGGVLSPFVGNLNFLRSINLPNNSFRGKIPHEVGNLFRLQNLTLTNNYFL--- 95
            +  +            NL  L  + + N     K+P  +  L  +Q + +  N  +   
Sbjct: 230 ENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGE 289

Query: 96  -----GKILTDLSHCSNLMKFEASNNKL-EGEIPVKISNLLMLQILNIAENHLKGQLPAS 149
                 + L D      +       N L    +   +  +  L +L    N L+G    +
Sbjct: 290 QLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEG-KLPA 348

Query: 150 IGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVAYNQFSGMIPP---IYNISSLQYI 206
            G+   L  +++  N++     +       + + + A+N+    IP      ++S +  I
Sbjct: 349 FGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKY-IPNIFDAKSVSVMSAI 407

Query: 207 FIHTNRFHGSVPLDNG------VNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINRN 260
               N        +            N+   ++S N ++   ++  S  + L  + +  N
Sbjct: 408 DFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGN 467

Query: 261 LFSG-------KVSINFSRLQNLSRLNLGENNLGTGTTNDLDFITLLTNCTKLEVLDLHS 313
           + +          + NF     L+ ++L  N L T  ++D       T    L  +DL  
Sbjct: 468 MLTEIPKNSLKDENENFKNTYLLTSIDLRFNKL-TKLSDDFRA----TTLPYLVGIDLSY 522

Query: 314 NRFGGVLPFSLANLST-----TMTEIAIGSNQISDTIPDVIANLVNLNALGVESNQLAGT 368
           N F    P    N ST        +     N+     P+ I    +L  L + SN +   
Sbjct: 523 NSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RK 580

Query: 369 IPLAIGELKSIQILFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQ 414
           +   I    +I +L + +N       S +         +L  +  Q
Sbjct: 581 VNEKI--TPNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQ 624

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  174 bits (444), Expect = 2e-47
 Identities = 71/411 (17%), Positives = 131/411 (31%), Gaps = 31/411 (7%)

Query: 55  GNLNFLRSINLPNNSFRGKIPHEVGNLFRLQNLTLTNNYFLGKILTDLSHCSNLMKFEAS 114
                  + N            +  NL  L ++ + N   L K+ T L     +     +
Sbjct: 222 NICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVA 281

Query: 115 NNKL--------EGEIPVKISNLLMLQILNIAENHLK-GQLPASIGNLSALQEIDVRGNR 165
            N+         + +          +QI+ I  N+LK   +  S+  +  L  ++   N+
Sbjct: 282 CNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQ 341

Query: 166 LGGRIPSTISHVRNLISFNVAYNQFSGMIPPI-YNISSLQYIFIHTNRFHGSVPLDNGVN 224
           L G++P+       L S N+AYNQ + +          ++ +    N+      + +  +
Sbjct: 342 LEGKLPA-FGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKS 400

Query: 225 LPNLRYFSISGNNLTG-------SLQDSLSNATNLQGLEINRNLFSGKVSINFSRLQNLS 277
           +  +     S N +          L  +     N+  + ++ N  S      FS    LS
Sbjct: 401 VSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLS 460

Query: 278 RLNLGENNLGTGTTNDLDFITL-LTNCTKLEVLDLHSNRFGGVLP-FSLANLSTTMTEIA 335
            +NL  N L     N L        N   L  +DL  N+   +   F    L   +  I 
Sbjct: 461 SINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTL-PYLVGID 519

Query: 336 IGSNQISDTIPDVIANLVNL------NALGVESNQLAGTIPLAIGELKSIQILFLNENFL 389
           +  N  S   P    N   L      N    + N+     P  I    S+  L +  N +
Sbjct: 520 LSYNSFS-KFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI 578

Query: 390 RGTIPSSLGNLTLLTQLILEVNNLQGKIPPSNGNCQNLILLTTRKNKLSGI 440
           R  +   +     ++ L ++ N                 +     +K   I
Sbjct: 579 R-KVNEKI--TPNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQDI 626

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  174 bits (442), Expect = 3e-47
 Identities = 67/464 (14%), Positives = 138/464 (29%), Gaps = 68/464 (14%)

Query: 111 FEASNNKLEGEIPVKISNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGG-- 168
           F    +    +  V +++   +  L++      G++P +IG L+ L+ + +  +      
Sbjct: 62  FNKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNE 121

Query: 169 --RIPSTISHVRNLISFNVAYNQFSGMIPPIYNISSLQYIFIHTNRFHGSVPLDNGVNLP 226
               P  IS   +          +                             D   +  
Sbjct: 122 RLFGPKGISANMSDEQKQKMRMHYQKTFVD----------------------YDPREDFS 159

Query: 227 NLRYFSISGNNLTGSLQDSLSNATNLQGLEINRNLFSGKVSINFSRLQNLSRLNLGENNL 286
           +L    I+ +    S++ S         +    N  +  VS    RL  L +  +G +  
Sbjct: 160 DLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPF 218

Query: 287 GTGTTNDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQISDTIP 346
                           C   E  +    +          NL   +T++ + +      +P
Sbjct: 219 -----------VAENICEAWENENSEYAQQYKTEDLKWDNL-KDLTDVEVYNCPNLTKLP 266

Query: 347 DVIANLVNLNALGVESNQL--------AGTIPLAIGELKSIQILFLNENFLR-GTIPSSL 397
             +  L  +  + V  N+                    + IQI+++  N L+   + +SL
Sbjct: 267 TFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSL 326

Query: 398 GNLTLLTQLILEVNNLQGKIPPSNGNCQNLILLTTRKNKLSGIVPRQLLRIITLSVLLDL 457
             +  L  L    N L+G   P+ G+   L  L    N+++ I P            L  
Sbjct: 327 QKMKKLGMLECLYNQLEG-KLPAFGSEIKLASLNLAYNQITEI-PANFCGFTEQVENLSF 384

Query: 458 SDNLLSG-HFPTKVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTISIPS 516
           + N L          ++  + ++D S N                             +  
Sbjct: 385 AHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDP-----------------LDP 427

Query: 517 TLSSLKSITELDLSRNNLSGHIPQYLENLSFLLFLNMSYNHFEG 560
           T     +++ ++LS N +S    +     S L  +N+  N    
Sbjct: 428 TPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTE 471

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  158 bits (402), Expect = 6e-42
 Identities = 56/447 (12%), Positives = 118/447 (26%), Gaps = 78/447 (17%)

Query: 136 NIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVAYNQFSGMIP 195
           N   +    Q   S+ +   +  + + G    GR+P  I  +  L    +  +       
Sbjct: 63  NKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKV-NE 121

Query: 196 PIYNISSLQYIFIHTNRFHGSVPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNA--TNLQ 253
            ++    +                       +         +   +  D       ++L 
Sbjct: 122 RLFGPKGIS-------------------ANMSDEQKQKMRMHYQKTFVDYDPREDFSDLI 162

Query: 254 GLEINRNLFSGKVSINFSRLQNLSRLNLGENNLGTGTTNDLDFITLLTNCTKLEVLDLHS 313
              IN +     +  +       +++    NN+             +   TKL    + +
Sbjct: 163 KDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-------VSKAVMRLTKLRQFYMGN 215

Query: 314 NRFGGVLPFSLANLSTTMTEIAIGSNQISDTIPDVIANLVNLNALGVESNQLAGTIPLAI 373
           + F                       Q   T      NL +L  + V +      +P  +
Sbjct: 216 SPFVAENICEAWENEN------SEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFL 269

Query: 374 GELKSIQILFLNENFLR--------GTIPSSLGNLTLLTQLILEVNNLQ-GKIPPSNGNC 424
             L  +Q++ +  N               +       +  + +  NNL+   +  S    
Sbjct: 270 KALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKM 329

Query: 425 QNLILLTTRKNKLSGIVPRQLLRIITLSVLLDLSDNLLSGHFPTKVGNLKNLVSLDISSN 484
           + L                          +L+   N L G  P   G+   L SL+++ N
Sbjct: 330 KKL-------------------------GMLECLYNQLEGKLPA-FGSEIKLASLNLAYN 363

Query: 485 MFSGEIPTTLGGCTSLEYLGMQDNSFT-ISIPSTLSSLKSITELDLSRNNLSG------- 536
             +       G    +E L    N    I       S+  ++ +D S N +         
Sbjct: 364 QITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFD 423

Query: 537 HIPQYLENLSFLLFLNMSYNHFEGKVP 563
            +         +  +N+S N       
Sbjct: 424 PLDPTPFKGINVSSINLSNNQISKFPK 450

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 92.0 bits (229), Expect = 9e-20
 Identities = 23/198 (11%), Positives = 48/198 (24%), Gaps = 11/198 (5%)

Query: 373 IGELKSIQILFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQG----KIPPSNGNCQNLI 428
           +     +  L L      G +P ++G LT L  L L  +  +       P       +  
Sbjct: 77  LNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDE 136

Query: 429 LLTTRKNKLSGIVPRQLLRIITLSVL-LDLSDNLLSGHFPTKVGNLKNLVSLDISSNMFS 487
                +            R     ++   ++ +                  +   SN  +
Sbjct: 137 QKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNIT 196

Query: 488 GEIPTTLGGCTSLEYLGMQDNSFTISIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSF 547
             +   +   T L    M ++ F                 +              +NL  
Sbjct: 197 F-VSKAVMRLTKLRQFYMGNSPFVAENICEAWEN-----ENSEYAQQYKTEDLKWDNLKD 250

Query: 548 LLFLNMSYNHFEGKVPIE 565
           L  + +       K+P  
Sbjct: 251 LTDVEVYNCPNLTKLPTF 268

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 48.9 bits (117), Expect = 3e-06
 Identities = 9/90 (10%), Positives = 27/90 (30%), Gaps = 4/90 (4%)

Query: 478 SLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTISIPSTLSSLKSITELDLSRNNLSG- 536
           + +   +M+  +   +L     +  L ++    +  +P  +  L  +  L L  +     
Sbjct: 61  NFNKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVN 120

Query: 537 ---HIPQYLENLSFLLFLNMSYNHFEGKVP 563
                P+ +              H++    
Sbjct: 121 ERLFGPKGISANMSDEQKQKMRMHYQKTFV 150

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 42.3 bits (100), Expect = 4e-04
 Identities = 11/58 (18%), Positives = 23/58 (39%)

Query: 508 NSFTISIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLLFLNMSYNHFEGKVPIE 565
           + +      +L+S   +T L L     SG +P  +  L+ L  L +  +  +    + 
Sbjct: 67  DMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLF 124

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  233 bits (597), Expect = 2e-69
 Identities = 112/544 (20%), Positives = 197/544 (36%), Gaps = 35/544 (6%)

Query: 36  VTGLDLRHQSVGGVLSPFVGNLNFLRSINLPNNSFRGKIPHEVGNLFRLQNLTLTNNYFL 95
              LDL    +  + S    +   L+ ++L     +        +L  L  L LT N   
Sbjct: 30  TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 89

Query: 96  GKILTDLSHCSNLMKFEASNNKLEGEIPVKISNLLMLQILNIAENHLKG-QLPASIGNLS 154
              L   S  S+L K  A    L       I +L  L+ LN+A N ++  +LP    NL+
Sbjct: 90  SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLT 149

Query: 155 ALQEIDVRGNRLGGRIPSTISHVRNL----ISFNVAYNQFSGMIPPIYNISSLQYIFIHT 210
            L+ +D+  N++     + +  +  +    +S +++ N  + + P  +    L  + +  
Sbjct: 150 NLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRN 209

Query: 211 NRFHGSVPLDNGVNLPNLRYFSISGNNLTGSLQ------DSLSNATNLQGLEINRN---L 261
           N    +V       L  L    +                 +L    NL   E        
Sbjct: 210 NFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDY 269

Query: 262 FSGKVSINFSRLQNLSRLNLGENNLGTGTTNDLDFITLLTNCTKLEVLDLHSNRFGGVLP 321
           +   +   F+ L N+S  +L    +          +   +     + L+L + +FG    
Sbjct: 270 YLDDIIDLFNCLTNVSSFSLVSVTIER--------VKDFSYNFGWQHLELVNCKFGQFPT 321

Query: 322 FSLANLSTTMTEIAIGSNQISDTIPDVIANLVNLNALGVESNQLA--GTIPLAIGELKSI 379
             L +L        +              +L +L  L +  N L+  G    +     S+
Sbjct: 322 LKLKSLKR------LTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSL 375

Query: 380 QILFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSN-GNCQNLILLTTRKNKLS 438
           + L L+ N +  T+ S+   L  L  L  + +NL+     S   + +NLI L        
Sbjct: 376 KYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR 434

Query: 439 GIVPRQLLRIITLSVLLDLSDNLLSGHFPTKV-GNLKNLVSLDISSNMFSGEIPTTLGGC 497
                    + +L VL  ++ N    +F   +   L+NL  LD+S        PT     
Sbjct: 435 VAFNGIFNGLSSLEVL-KMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSL 493

Query: 498 TSLEYLGMQDNSFTISIPSTLSSLKSITELDLSRNNLSGHIPQYLENL-SFLLFLNMSYN 556
           +SL+ L M  N+F          L S+  LD S N++     Q L++  S L FLN++ N
Sbjct: 494 SSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN 553

Query: 557 HFEG 560
            F  
Sbjct: 554 DFAC 557

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  218 bits (558), Expect = 9e-64
 Identities = 92/515 (17%), Positives = 173/515 (33%), Gaps = 44/515 (8%)

Query: 84  LQNLTLTNNYFLGKILTDLSHCSNLMKFEASNNKLEGEIPVKISNLLMLQILNIAENHLK 143
            +NL L+ N               L   + S  +++        +L  L  L +  N ++
Sbjct: 30  TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 89

Query: 144 GQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVAYNQFSGMIPP--IYNIS 201
                +   LS+LQ++      L       I H++ L   NVA+N       P    N++
Sbjct: 90  SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLT 149

Query: 202 SLQYIFIHTNRFHGSVP--LDNGVNLP------------------------NLRYFSISG 235
           +L+++ + +N+        L     +P                         L   ++  
Sbjct: 150 NLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRN 209

Query: 236 NNLTGSL-QDSLSNATNLQGLEINRNLFSGKVSI---NFSRLQNLSRLNLGENNLGTGTT 291
           N  + ++ +  +     L+   +    F  + ++   + S L+ L  L + E  L     
Sbjct: 210 NFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDY 269

Query: 292 NDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQISDTIPDVIAN 351
              D I L    T +    L S     V  FS    +     + + + +        + +
Sbjct: 270 YLDDIIDLFNCLTNVSSFSLVSVTIERVKDFS---YNFGWQHLELVNCKFGQFPTLKLKS 326

Query: 352 LVNLNALGVESNQLAGTIPLAIGELKSIQILFLNENFL--RGTIPSSLGNLTLLTQLILE 409
           L  L           G    +  +L S++ L L+ N L  +G    S    T L  L L 
Sbjct: 327 LKRLT-----FTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLS 381

Query: 410 VNNLQGKIPPSNGNCQNLILLTTRKNKLSGIVPRQLLRIITLSVLLDLSDNLLSGHFPTK 469
            N +   +  +    + L  L  + + L  +    +   +   + LD+S       F   
Sbjct: 382 FNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGI 440

Query: 470 VGNLKNLVSLDISSNMFSGEI-PTTLGGCTSLEYLGMQDNSFTISIPSTLSSLKSITELD 528
              L +L  L ++ N F     P       +L +L +         P+  +SL S+  L+
Sbjct: 441 FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN 500

Query: 529 LSRNNLSGHIPQYLENLSFLLFLNMSYNHFEGKVP 563
           +S NN         + L+ L  L+ S NH      
Sbjct: 501 MSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKK 535

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  160 bits (407), Expect = 1e-42
 Identities = 85/527 (16%), Positives = 172/527 (32%), Gaps = 42/527 (7%)

Query: 39  LDLRHQSVGGVLSPFVGNLNFLRSINLPNNSFRGKIPHEVGNLFRLQNLTLTNNYFLG-K 97
           L L    +  +       L+ L+ +     +        +G+L  L+ L + +N     K
Sbjct: 81  LILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFK 140

Query: 98  ILTDLSHCSNLMKFEASNNKLEGEIPVKISNLLMLQI----LNIAENHLKGQLPASIGNL 153
           +    S+ +NL   + S+NK++      +  L  + +    L+++ N +    P +   +
Sbjct: 141 LPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI 200

Query: 154 SALQEIDVRGNRLGGRIPST-ISHVRNLISFNVAYNQFSGM-------IPPIYNISSLQY 205
             L ++ +R N     +  T I  +  L    +   +F             +  + +L  
Sbjct: 201 R-LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTI 259

Query: 206 IFIHTNRFHGSVPLDNGV--NLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINRNLFS 263
                      +     +   L N+  FS+    +        S     Q LE+    F 
Sbjct: 260 EEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERV--KDFSYNFGWQHLELVNCKFG 317

Query: 264 GKVSINFSRLQNLSRLNLGENNLGTGTT-----------NDLDFITL----LTNCTKLEV 308
              ++    L+ L+  +    N  +              N L F           T L+ 
Sbjct: 318 QFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKY 377

Query: 309 LDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQISDTIP-DVIANLVNLNALGVESNQLAG 367
           LDL  N     +  +   L   +  +    + +       V  +L NL  L +       
Sbjct: 378 LDLSFNGVIT-MSSNFLGL-EQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRV 435

Query: 368 TIPLAIGELKSIQILFLNENFLRGTI-PSSLGNLTLLTQLILEVNNLQGKIPPSNGNCQN 426
                   L S+++L +  N  +    P     L  LT L L    L+   P +  +  +
Sbjct: 436 AFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSS 495

Query: 427 LILLTTRKNKLSGIVPRQLLRIITLSVLLDLSDNLLSGHFPTKVGNL-KNLVSLDISSNM 485
           L +L    N    +       + +L VL D S N +      ++ +   +L  L+++ N 
Sbjct: 496 LQVLNMSHNNFFSLDTFPYKCLNSLQVL-DYSLNHIMTSKKQELQHFPSSLAFLNLTQND 554

Query: 486 FSGEIPTT--LGGCTSLEYLGMQDNSFTISIPSTLSSLKSITELDLS 530
           F+        L        L ++      + PS       +  L+++
Sbjct: 555 FACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQG-MPVLSLNIT 600

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  147 bits (373), Expect = 4e-38
 Identities = 67/413 (16%), Positives = 132/413 (31%), Gaps = 34/413 (8%)

Query: 170 IPSTISHVRNLISFNVAYNQFSGMIPP-IYNISSLQYIFIHTNRFHGSVPLDNGVNLPNL 228
           IP  +    +  + ++++N    +     ++   LQ + +               +L +L
Sbjct: 22  IPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQ-SLSHL 78

Query: 229 RYFSISGNNLTGSLQDSLSNATNLQGLEINRNLFSGKVSINFSRLQNLSRLNLGENNLGT 288
               ++GN +      + S  ++LQ L       +   +     L+ L  LN+  N +  
Sbjct: 79  STLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLI-- 136

Query: 289 GTTNDLDFITLLTNCTKLEVLDLHSNRFGGVLPFS---LANLSTTMTEIAIGSNQISDTI 345
                       +N T LE LDL SN+   +       L  +      + +  N ++   
Sbjct: 137 ---QSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQ 193

Query: 346 PDVIANLVNLNALGVESNQLAGTIP-LAIGELKSIQIL------FLNENFLRGTIPSSLG 398
           P     +  L+ L + +N  +  +    I  L  +++       F NE  L     S+L 
Sbjct: 194 PGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALE 252

Query: 399 NLTLLTQLILEVNNL---QGKIPPSNGNCQNLILLTTRKNKLSGIVPRQLLRIITLSVLL 455
            L  LT     +  L      I        N+   +     +  +              L
Sbjct: 253 GLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQH---L 309

Query: 456 DLSDNLLSGHFPTKVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTIS-- 513
           +L +         K+ +LK L                +     SLE+L +  N  +    
Sbjct: 310 ELVNCKFGQFPTLKLKSLKRLTFTSNKGG-----NAFSEVDLPSLEFLDLSRNGLSFKGC 364

Query: 514 IPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLLFLNMSYNHFEGKVPIEC 566
              +     S+  LDLS N +   +      L  L  L+  +++ +       
Sbjct: 365 CSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSV 416

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  228 bits (583), Expect = 1e-66
 Identities = 107/543 (19%), Positives = 199/543 (36%), Gaps = 42/543 (7%)

Query: 39  LDLRHQSVGGVLSPFVGNLNFLRSINLPNNSFRGKIPHEVGNLFRLQNLTLTNNYFLGKI 98
           L L   S+  + +        L +++L +N            L  LQ L L+NN      
Sbjct: 102 LHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALK 161

Query: 99  LTDLS--HCSNLMKFEASNNKLEGEIPVKISNLLMLQILNIAENHLKGQLPASIG---NL 153
             +L     S+L K E S+N+++   P     +  L  L +    L   L   +      
Sbjct: 162 SEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELAN 221

Query: 154 SALQEIDVRGNRLGGRIPSTISHVR--NLISFNVAYNQFSGMIPP-IYNISSLQYIFIHT 210
           ++++ + +  ++L     +T   ++  NL   +++YN  + +       +  L+Y F+  
Sbjct: 222 TSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEY 281

Query: 211 NRFHGSVPLDNGVNLPNLRY---------FSISGNNLTGSLQDSLSNATNLQGLEINRNL 261
           N             L N+RY          SIS  +L      S      L+ L +  N 
Sbjct: 282 NNIQHLFSHSLH-GLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDND 340

Query: 262 FSGKVSINFSRLQNLSRLNLGENNLGTGTTNDLDFITLLTNCTKLEVLDLHSNRFGGVLP 321
             G  S  F+ L NL  L+L  +     T  +  F++L    + L +L+L  N+   +  
Sbjct: 341 IPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSL--AHSPLHILNLTKNKISKIES 398

Query: 322 FSLANLSTTMTEIAIGSNQISDTIP-DVIANLVNLNALGVESNQLAGTIPLAIGELKSIQ 380
            + + L   +  + +G N+I   +       L N+  + +  N+       +   + S+Q
Sbjct: 399 DAFSWL-GHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQ 457

Query: 381 ILFLNENFLRG--TIPSSLGNLTLLTQLILEVNNLQGKIPPSNGNCQNLILLTTRKNKLS 438
            L L    L+   + PS    L  LT L L  NN+           + L +L  + N L+
Sbjct: 458 RLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLA 517

Query: 439 GIVPRQLLRIITLSVLLDLSDNLLSGHFPTKVGNLKNLVSLDISSNMFSGEIPTTLGGCT 498
                             L  +   G     +  L +L  L++ SN F            
Sbjct: 518 -----------------RLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLF 560

Query: 499 SLEYLGMQDNSFTISIPSTLSSLKSITELDLSRNNLSGHIPQYLE-NLSFLLFLNMSYNH 557
            L+ + +  N+      S  ++  S+  L+L +N ++    +        L  L+M +N 
Sbjct: 561 ELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNP 620

Query: 558 FEG 560
           F+ 
Sbjct: 621 FDC 623

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  225 bits (576), Expect = 1e-65
 Identities = 102/547 (18%), Positives = 188/547 (34%), Gaps = 27/547 (4%)

Query: 39  LDLRHQSVGGVLSPFVGNLNFLRSINLPNNSFRGKIPHEVGNLFRLQNLTLTNNYFLGKI 98
           LD+   ++  +       L  L+ +NL +N               L  L L +N      
Sbjct: 54  LDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIK 113

Query: 99  LTDLSHCSNLMKFEASNNKLEGEIPVKISNLLMLQILNIAENHLKGQLPA--SIGNLSAL 156
                   NL+  + S+N L          L  LQ L ++ N ++        I   S+L
Sbjct: 114 NNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSL 173

Query: 157 QEIDVRGNRLGGRIPSTISHVRNLISFNVAYNQFSGMIPPI----YNISSLQYIFIHTNR 212
           +++++  N++    P     +  L    +   Q    +          +S++ + +  ++
Sbjct: 174 KKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQ 233

Query: 213 FHGSVPLD-NGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINRNLFSGKVSINFS 271
              +      G+   NL    +S NNL     DS +    L+   +  N      S +  
Sbjct: 234 LSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLH 293

Query: 272 RLQNLSRLNLGENNL-GTGTTNDLDFIT--LLTNCTKLEVLDLHSNRFGGVLPFSLANLS 328
            L N+  LNL  +    + +   L  I          LE L++  N   G+       L 
Sbjct: 294 GLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGL- 352

Query: 329 TTMTEIAIGSNQISDT--IPDVIANLVN--LNALGVESNQLAGTIPLAIGELKSIQILFL 384
             +  +++ ++  S      +   +L +  L+ L +  N+++     A   L  +++L L
Sbjct: 353 INLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDL 412

Query: 385 NENFLRGTIP-SSLGNLTLLTQLILEVNNLQGKIPPSNGNCQNLILLTTRKNKLSGIVPR 443
             N +   +       L  + ++ L  N        S     +L  L  R+  L  +   
Sbjct: 413 GLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNV-DS 471

Query: 444 QLLRIITLSVL--LDLSDNLLSGHFPTKVGNLKNLVSLDISSNMFS--------GEIPTT 493
                  L  L  LDLS+N ++      +  L+ L  LD+  N  +        G     
Sbjct: 472 SPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYF 531

Query: 494 LGGCTSLEYLGMQDNSFTISIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLLFLNM 553
           L G + L  L ++ N F          L  +  +DL  NNL+        N   L  LN+
Sbjct: 532 LKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNL 591

Query: 554 SYNHFEG 560
             N    
Sbjct: 592 QKNLITS 598

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  219 bits (561), Expect = 1e-63
 Identities = 95/522 (18%), Positives = 169/522 (32%), Gaps = 47/522 (9%)

Query: 57  LNFLRSINLPNNSFRGKIPHEVGNLFRLQNLTLTNNYFLGKILTDLSHCSNLMKFEASNN 116
              +  +NL +N  R           +L +L +  N               L      +N
Sbjct: 24  PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN 83

Query: 117 KLEGEIPVKISNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISH 176
           +L        +    L  L++  N ++            L  +D+  N L      T   
Sbjct: 84  ELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQ 143

Query: 177 VRNLISFNVAYNQFSGMIPPIYNISSLQYIFIHTNRFHGSVPLDNGVNLPNLRYFSISGN 236
           + NL    ++ N+   +                           +     +L+   +S N
Sbjct: 144 LENLQELLLSNNKIQALKS----------------------EELDIFANSSLKKLELSSN 181

Query: 237 NLTGSLQDSLSNATNLQGLEINRNLFSGKVSINFS---RLQNLSRLNLGENNLGTGTTND 293
            +             L GL +N       ++          ++  L+L  + L   +T  
Sbjct: 182 QIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQL---STTS 238

Query: 294 LDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQISDTIPDVIANLV 353
                 L   T L +LDL  N    V   S A L   +    +  N I       +  L 
Sbjct: 239 NTTFLGL-KWTNLTMLDLSYNNLNVVGNDSFAWL-PQLEYFFLEYNNIQHLFSHSLHGLF 296

Query: 354 NLNAL---------GVESNQLAGTIPLAIGELKSIQILFLNENFLRGTIPSSLGNLTLLT 404
           N+  L          +    L      +   LK ++ L + +N + G   +    L  L 
Sbjct: 297 NVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLK 356

Query: 405 QLILEVNNLQGKIPPS----NGNCQNLILLTTRKNKLSGIVPRQLLRIITLSVLLDLSDN 460
            L L  +    +   +    +     L +L   KNK+S I       +  L V LDL  N
Sbjct: 357 YLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEV-LDLGLN 415

Query: 461 LLSGHFPTKV-GNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFT--ISIPST 517
            +      +    L+N+  + +S N +      +     SL+ L ++  +     S PS 
Sbjct: 416 EIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSP 475

Query: 518 LSSLKSITELDLSRNNLSGHIPQYLENLSFLLFLNMSYNHFE 559
              L+++T LDLS NN++      LE L  L  L++ +N+  
Sbjct: 476 FQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLA 517

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  191 bits (487), Expect = 3e-53
 Identities = 83/459 (18%), Positives = 163/459 (35%), Gaps = 57/459 (12%)

Query: 114 SNNKLEGEIPVKISNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPST 173
           S+ KL  ++P  +   +   +LN+  N L+    A+    S L  +DV  N +    P  
Sbjct: 12  SHLKLT-QVPDDLPTNI--TVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPEL 68

Query: 174 ISHVRNLISFNVAYNQFSGMIPPIYNISSLQYIFIHTNRFHGSVPLDNGVNLPNLRYFSI 233
              +  L   N+ +N+ S +    +                            NL    +
Sbjct: 69  CQKLPMLKVLNLQHNELSQLSDKTFA------------------------FCTNLTELHL 104

Query: 234 SGNNLTGSLQDSLSNATNLQGLEINRNLFSGKVSINFSRLQNLSRLNLGENNLGTGTTND 293
             N++     +      NL  L+++ N  S        +L+NL  L L  N +    + +
Sbjct: 105 MSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEE 164

Query: 294 LDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQISDTIPDVIA--- 350
           LD        + L+ L+L SN+     P     +   +  + + + Q+  ++ + +    
Sbjct: 165 LDIF----ANSSLKKLELSSNQIKEFSPGCFHAI-GRLFGLFLNNVQLGPSLTEKLCLEL 219

Query: 351 NLVNLNALGVESNQLAGTIPLAIGELK--SIQILFLNENFLRGTIPSSLGNLTLLTQLIL 408
              ++  L + ++QL+ T       LK  ++ +L L+ N L      S   L  L    L
Sbjct: 220 ANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFL 279

Query: 409 EVNNLQGKIPPSNGNCQNLILLTTRKNKLSGIVPRQLLRIITLSVLLDLSDNLLSGHFPT 468
           E NN+Q     S     N+  L  +++                     +S   L      
Sbjct: 280 EYNNIQHLFSHSLHGLFNVRYLNLKRSFTK----------------QSISLASLPKIDDF 323

Query: 469 KVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTISIPSTLS----SLKSI 524
               LK L  L++  N   G       G  +L+YL + ++  ++   +  +    +   +
Sbjct: 324 SFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPL 383

Query: 525 TELDLSRNNLSGHIPQYLENLSFLLFLNMSYNHFEGKVP 563
             L+L++N +S         L  L  L++  N    ++ 
Sbjct: 384 HILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELT 422

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  125 bits (315), Expect = 2e-30
 Identities = 61/262 (23%), Positives = 97/262 (37%), Gaps = 12/262 (4%)

Query: 306 LEVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQISDTIPDVIANLVNLNALGVESNQL 365
            EV D    +   V      +L T +T + +  NQ+             L +L V  N +
Sbjct: 6   HEVADCSHLKLTQVPD----DLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTI 61

Query: 366 AGTIPLAIGELKSIQILFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSNGNCQ 425
           +   P    +L  +++L L  N L      +    T LT+L L  N++Q          +
Sbjct: 62  SKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQK 121

Query: 426 NLILLTTRKNKLSGIVPRQLLRIITLSVLLDLSDNLLSG--HFPTKVGNLKNLVSLDISS 483
           NLI L    N LS       +++  L   L LS+N +         +    +L  L++SS
Sbjct: 122 NLITLDLSHNGLSSTKLGTQVQLENLQE-LLLSNNKIQALKSEELDIFANSSLKKLELSS 180

Query: 484 NMFSGEIPTTLGGCTSLEYLGMQDNSFTISIPSTLS---SLKSITELDLSRNNLSGHIPQ 540
           N      P        L  L + +     S+   L    +  SI  L LS + LS     
Sbjct: 181 NQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNT 240

Query: 541 YLENLSF--LLFLNMSYNHFEG 560
               L +  L  L++SYN+   
Sbjct: 241 TFLGLKWTNLTMLDLSYNNLNV 262

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  117 bits (296), Expect = 6e-28
 Identities = 62/326 (19%), Positives = 111/326 (34%), Gaps = 23/326 (7%)

Query: 39  LDLRHQSVGGVLSPFVGNLNFLRSINLPNNSFRGKIPHEVGNLFRLQNLTLTNNYFLGKI 98
             +   S+  +       L  L  +N+ +N   G   +    L  L+ L+L+N++   + 
Sbjct: 310 QSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRT 369

Query: 99  LTDLS----HCSNLMKFEASNNKLEGEIPVKISNLLMLQILNIAENHLKGQLPAS-IGNL 153
           LT+ +      S L     + NK+        S L  L++L++  N +  +L       L
Sbjct: 370 LTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGL 429

Query: 154 SALQEIDVRGNRLGGRIPSTISHVRNLISFNVAYNQFSGMI---PPIYNISSLQYIFIHT 210
             + EI +  N+      ++ + V +L    +       +     P   + +L  + +  
Sbjct: 430 ENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSN 489

Query: 211 NRFHGSVPLDNGVNLPNLRYFSISGNNLT--------GSLQDSLSNATNLQGLEINRNLF 262
           N        D    L  L    +  NNL         G     L   ++L  L +  N F
Sbjct: 490 NNIANIND-DMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGF 548

Query: 263 SGKVSINFSRLQNLSRLNLGENNLGTGTTNDLDFITLLTNCTKLEVLDLHSNRFGGVLPF 322
                  F  L  L  ++LG NNL       +       N   L+ L+L  N    V   
Sbjct: 549 DEIPVEVFKDLFELKIIDLGLNNL-NTLPASV-----FNNQVSLKSLNLQKNLITSVEKK 602

Query: 323 SLANLSTTMTEIAIGSNQISDTIPDV 348
                   +TE+ +  N    T   +
Sbjct: 603 VFGPAFRNLTELDMRFNPFDCTCESI 628

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  108 bits (273), Expect = 3e-25
 Identities = 44/216 (20%), Positives = 78/216 (36%), Gaps = 6/216 (2%)

Query: 353 VNLNALGVESNQLAGTIPLAIGELKSIQILFLNENFLRGTIPSSLGNLTLLTQLILEVNN 412
           V+         +L   +P  +    +I +L L  N LR    ++    + LT L +  N 
Sbjct: 4   VSHEVADCSHLKLT-QVPDDL--PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNT 60

Query: 413 LQGKIPPSNGNCQNLILLTTRKNKLSGIVPRQLLRIITLSVLLDLSDNLLSGHFPTKVGN 472
           +    P        L +L  + N+LS +  +       L+ L  L  N +          
Sbjct: 61  ISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTEL-HLMSNSIQKIKNNPFVK 119

Query: 473 LKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTISIPSTLSSLK--SITELDLS 530
            KNL++LD+S N  S     T     +L+ L + +N         L      S+ +L+LS
Sbjct: 120 QKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELS 179

Query: 531 RNNLSGHIPQYLENLSFLLFLNMSYNHFEGKVPIEC 566
            N +    P     +  L  L ++       +  + 
Sbjct: 180 SNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKL 215

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 49.6 bits (119), Expect = 2e-06
 Identities = 21/132 (15%), Positives = 40/132 (30%), Gaps = 1/132 (0%)

Query: 40  DLRHQSVGGVLSPFVGNLNFLRSINLPNNSFRGKIPHEVGNLFRLQNLTLTNNYFLGKIL 99
            L   +  G    F+  L+ L  +NL +N F         +LF L+ + L  N       
Sbjct: 518 RLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPA 577

Query: 100 TDLSHCSNLMKFEASNNKLEGEIPVKISNLL-MLQILNIAENHLKGQLPASIGNLSALQE 158
           +  ++  +L       N +              L  L++  N       +    ++ + E
Sbjct: 578 SVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWINE 637

Query: 159 IDVRGNRLGGRI 170
                  L    
Sbjct: 638 THTNIPELSSHY 649

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  218 bits (557), Expect = 5e-62
 Identities = 100/598 (16%), Positives = 192/598 (32%), Gaps = 72/598 (12%)

Query: 2   KSQLQDPLGVTSSWNNSINLCQW---TGVTCGHRRQRVTGLDLRHQSVGGVLSPFVGNLN 58
            S   +    + +WN +  L  W    GV   +   RVTGL L      G +   +G L 
Sbjct: 289 YSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNN-GRVTGLSLAGFGAKGRVPDAIGQLT 347

Query: 59  FLRSINLPNNSFRGKIPHEVGNLF-------RLQNLTLTNNYFLGKILTDLSHCSNLMKF 111
            L+ ++   +S                    R   + +            L+    L   
Sbjct: 348 ELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDA 407

Query: 112 EASNNKLEGEIPVKISNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIP 171
              N +++        +L   QI N+  N +   +  +I  L+ LQ I    +       
Sbjct: 408 INRNPEMKPIKKDSRISLKDTQIGNL-TNRITF-ISKAIQRLTKLQIIYFANSPFTYDNI 465

Query: 172 STISHVRNLISFNVAYNQFSGMIPP-IYNISSLQYIFIHTNRFHGSVPLDNGVNLPNLRY 230
           +      N       Y +          N+  L  + ++       +P     +LP L+ 
Sbjct: 466 AVDWEDANS-----DYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLY-DLPELQS 519

Query: 231 FSISGNNLTG---------SLQDSLSNATNLQGLEINRNLFSG-KVSINFSRLQNLSRLN 280
            +I+ N              L D       +Q   +  N       S +  ++  L  L+
Sbjct: 520 LNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLD 579

Query: 281 LGENNLGTGTTNDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQ 340
              N +          +       KL  L L  N+    +P      +  +  +    N+
Sbjct: 580 CVHNKVRH--------LEAFGTNVKLTDLKLDYNQIEE-IPEDFCAFTDQVEGLGFSHNK 630

Query: 341 ISDTIPDV--IANLVNLNALGVESNQLAG-----TIPLAIGELKSIQILFLNENFLRGTI 393
           +   IP++    ++  + ++    N++       +  +   +  +   + L+ N ++   
Sbjct: 631 LK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFP 689

Query: 394 PSSLGNLTLLTQLILEVNNLQ-------GKIPPSNGNCQNLILLTTRKNKLSGIVPRQLL 446
                  + ++ +IL  N +             +  N   L  +  R NKL+ +      
Sbjct: 690 TELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDD--F 747

Query: 447 RIITLSVL--LDLSDNLLSGHFPTKVGNLKNLVSLDI------SSNMFSGEIPTTLGGCT 498
           R  TL  L  +D+S N  S  FPT+  N   L +  I        N    + PT +  C 
Sbjct: 748 RATTLPYLSNMDVSYNCFS-SFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCP 806

Query: 499 SLEYLGMQDNSFTISIPSTLSSLKSITELDLSRNNLS----GHIPQYLENLSFLLFLN 552
           SL  L +  N     +   L     +  LD++ N         +  Y+E   ++L  +
Sbjct: 807 SLIQLQIGSNDIR-KVDEKL--TPQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYD 861

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  173 bits (439), Expect = 4e-46
 Identities = 78/507 (15%), Positives = 159/507 (31%), Gaps = 49/507 (9%)

Query: 85  QNLTLTNNYFLGKILTDLSHCSNLMKFEASNNKLEGEIPVKISNLLMLQILNIAENHLKG 144
           + L   N  +    + +  H  N   F    +    +  V + N   +  L++A    KG
Sbjct: 279 EALDGKNWRYYSGTINNTIHSLN-WNFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKG 337

Query: 145 QLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVAYNQFSGMIPPIY------ 198
           ++P +IG L+ L+ +    +                       ++       ++      
Sbjct: 338 RVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQR 397

Query: 199 -NISSLQYIFIHTNRFHGSVPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEI 257
            N+S L    I+ N     +  D+ ++L +        N +T  +  ++   T LQ +  
Sbjct: 398 LNLSDLLQDAINRNPEMKPIKKDSRISLKDT-QIGNLTNRIT-FISKAIQRLTKLQIIYF 455

Query: 258 NRNLFSGKVSINFSRLQNLSRLNLGENNLGTGTTNDLDFITLLTNCTKLEVLDLHSNRFG 317
             + F+           N       EN   +            +N   L  ++L++    
Sbjct: 456 ANSPFTYDNIAVDWEDANSDYAKQYENEELS-----------WSNLKDLTDVELYNCPNM 504

Query: 318 GVLPFSLANLSTTMTEIAIGSNQISD---------TIPDVIANLVNLNALGVESNQLAG- 367
             LP  L +L   +  + I  N+             + D       +    +  N L   
Sbjct: 505 TQLPDFLYDL-PELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEF 563

Query: 368 TIPLAIGELKSIQILFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSNG-NCQN 426
               ++ ++  + +L    N +      + G    LT L L+ N ++  IP         
Sbjct: 564 PASASLQKMVKLGLLDCVHNKV--RHLEAFGTNVKLTDLKLDYNQIEE-IPEDFCAFTDQ 620

Query: 427 LILLTTRKNKLSGIVPRQLLRIITLSVLLDLSDNLLSGH-----FPTKVGNLKNLVSLDI 481
           +  L    NKL  I      + + +   +D S N +                 N  ++ +
Sbjct: 621 VEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTL 680

Query: 482 SSNMFSGEIPTTLGGCTSLEYLGMQDNSFT-------ISIPSTLSSLKSITELDLSRNNL 534
           S N             + +  + + +N  T               +   +T +DL  N L
Sbjct: 681 SYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKL 740

Query: 535 SGHIPQ-YLENLSFLLFLNMSYNHFEG 560
           +          L +L  +++SYN F  
Sbjct: 741 TSLSDDFRATTLPYLSNMDVSYNCFSS 767

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  158 bits (401), Expect = 3e-41
 Identities = 63/405 (15%), Positives = 118/405 (29%), Gaps = 29/405 (7%)

Query: 59  FLRSINLPNNSFRGKIPHEVGNLFRLQNLTLTNNYFLGKILTDLSHCSNLMKFEASNNKL 118
                N               NL  L ++ L N   + ++   L     L     + N+ 
Sbjct: 468 DWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRG 527

Query: 119 EG---------EIPVKISNLLMLQILNIAENHLKG-QLPASIGNLSALQEIDVRGNRLGG 168
                       +         +QI  +  N+L+     AS+  +  L  +D   N++  
Sbjct: 528 ISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKV-- 585

Query: 169 RIPSTISHVRNLISFNVAYNQFSGMIPPI-YNISSLQYIFIHTNRFHGSVPLDNGVNLPN 227
           R          L    + YNQ   +          ++ +    N+      + N  ++  
Sbjct: 586 RHLEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYV 645

Query: 228 LRYFSISGNNLTG-----SLQDSLSNATNLQGLEINRNLFSGKVSINFSRLQNLSRLNLG 282
           +     S N +       S         N   + ++ N      +  F+    +S + L 
Sbjct: 646 MGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILS 705

Query: 283 ENNLGTGTTNDLDFITL-LTNCTKLEVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQI 341
            N + +   N L        N   L  +DL  N+   +     A     ++ + +  N  
Sbjct: 706 NNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCF 765

Query: 342 SDTIPDVIANLVNLNALGVE------SNQLAGTIPLAIGELKSIQILFLNENFLRGTIPS 395
           S + P    N   L A G+        N++    P  I    S+  L +  N +R  +  
Sbjct: 766 S-SFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIR-KVDE 823

Query: 396 SLGNLTLLTQLILEVNNLQGKIPPSNGNCQNLILLTTRKNKLSGI 440
            L     L  L +  N        S        +     +K   I
Sbjct: 824 KL--TPQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQDI 866

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  148 bits (374), Expect = 1e-37
 Identities = 63/407 (15%), Positives = 131/407 (32%), Gaps = 45/407 (11%)

Query: 39  LDLRHQSVGGVLSPFVGNLNFLRSINLPNNSFRGKIPHEVGNLFRLQNLTLTNNYF---- 94
            +  +            NL  L  + L N     ++P  + +L  LQ+L +  N      
Sbjct: 472 ANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAA 531

Query: 95  -----LGKILTDLSHCSNLMKFEASNNKLEG-EIPVKISNLLMLQILNIAENHLKGQLPA 148
                  ++  D      +  F    N LE       +  ++ L +L+   N ++  L  
Sbjct: 532 QLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR-HLE- 589

Query: 149 SIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVAYNQFSGMIPPIYNISS---LQY 205
           + G    L ++ +  N++        +    +     ++N+    IP I+N  S   +  
Sbjct: 590 AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKY-IPNIFNAKSVYVMGS 648

Query: 206 IFIHTNRFHGSVP----LDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINRNL 261
           +    N+            +     N    ++S N +     +  +  + +  + ++ NL
Sbjct: 649 VDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNL 708

Query: 262 FS-------GKVSINFSRLQNLSRLNLGENNLGTGTTNDLDFITLLTNCTKLEVLDLHSN 314
            +            N+     L+ ++L  N L       L      T    L  +D+  N
Sbjct: 709 MTSIPENSLKPKDGNYKNTYLLTTIDLRFNKL-----TSLSDDFRATTLPYLSNMDVSYN 763

Query: 315 RFGGVLPFSLANLSTTMTEIAI------GSNQISDTIPDVIANLVNLNALGVESNQLAGT 368
            F    P    N  + +    I        N+I    P  I    +L  L + SN +   
Sbjct: 764 CFSS-FPTQPLNS-SQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RK 820

Query: 369 IPLAIGELKSIQILFLNEN-FLRGTIPSSLGNLTLLTQLILEVNNLQ 414
           +   +     + IL + +N  +   + S    +      +L  +  Q
Sbjct: 821 VDEKL--TPQLYILDIADNPNISIDVTSVCPYIEAGM-YVLLYDKTQ 864

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  204 bits (520), Expect = 2e-58
 Identities = 97/537 (18%), Positives = 180/537 (33%), Gaps = 22/537 (4%)

Query: 36  VTGLDLRHQSVGGVLSPFVGNLNFLRSINLPNNSFRGKIPHEVGNLFRLQNLTLTNNYFL 95
              L+     +  + +     L  L  ++L              +  RL  L LT N  +
Sbjct: 35  TECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLI 94

Query: 96  GKILTDLSHCSNLMKFEASNNKLEGEIPVKISNLLMLQILNIAENHLKGQLPASIGNLSA 155
               T LS    L         +     + + N   L+ L +  NH+             
Sbjct: 95  FMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEK 154

Query: 156 LQEIDVRGNRLGGRIPSTISHVRNL--ISFNVAYNQFSGMIPPIYNISSLQYIFIHTNRF 213
           L+ +D + N +       +S ++    +S N+  N  +G+ P  ++ +  Q +     + 
Sbjct: 155 LKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQN 214

Query: 214 HGSVPLDN-GVNLPNLRYFSISGNNLTGSLQDSLSN--ATNLQGLEINRNLFSGKVSINF 270
              +        + +L   +    +               +++ + + ++ F    S  F
Sbjct: 215 LLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTF 274

Query: 271 SRLQNLSRLNLGENNLGTGTTNDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSTT 330
                L  L+L   +L           + L   + L+ L L +N+F  +   S +N   +
Sbjct: 275 HCFSGLQELDLTATHLSE-------LPSGLVGLSTLKKLVLSANKFENLCQISASNF-PS 326

Query: 331 MTEIAIGSNQISDTI-PDVIANLVNLNALGVESNQLA--GTIPLAIGELKSIQILFLNEN 387
           +T ++I  N     +    + NL NL  L +  + +       L +  L  +Q L L+ N
Sbjct: 327 LTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYN 386

Query: 388 FLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSN-GNCQNLILLTTRKNKLSGIVPRQLL 446
                   +      L  L L    L+ K   S   N   L +L    + L     +   
Sbjct: 387 EPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFD 446

Query: 447 RIITLSVLLDLSDNLLSGHFPTKVG---NLKNLVSLDISSNMFSGEIPTTLGGCTSLEYL 503
            +  L  L +L  N        K      L  L  L +S    S            + ++
Sbjct: 447 GLPALQHL-NLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHV 505

Query: 504 GMQDNSFTISIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLLFLNMSYNHFEG 560
            +  N  T S    LS LK I  L+L+ N++S  +P  L  LS    +N+  N  + 
Sbjct: 506 DLSHNRLTSSSIEALSHLKGIY-LNLASNHISIILPSLLPILSQQRTINLRQNPLDC 561

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  194 bits (495), Expect = 7e-55
 Identities = 90/518 (17%), Positives = 170/518 (32%), Gaps = 20/518 (3%)

Query: 57  LNFLRSINLPNNSFRGKIPHEVGNLFRLQNLTLTNNYFLGKILTDLSHCSNLMKFEASNN 116
            N    +    N            L  L  L LT                 L     + N
Sbjct: 32  PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTAN 91

Query: 117 KLEGEIPVKISNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISH 176
            L       +S    L+ L   +  +       + N   L+ + +  N +          
Sbjct: 92  PLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFP 151

Query: 177 VRNLISFNVAYNQFSGMIPP-IYNISSLQYIFIHTNRFHGSVPLDNGVNLPNLRYFSISG 235
              L   +   N    +    + ++     + ++ N    +       +    +  +  G
Sbjct: 152 TEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGG 211

Query: 236 NNLTGSLQDSLSNAT--NLQGLEINRNLFSGKVSINFSRLQNLS--RLNLGENNLGTGTT 291
                 +   L N+T  +L                 F  L  +S   +NL ++     ++
Sbjct: 212 TQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISS 271

Query: 292 NDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQISDTIPDVIAN 351
           N           + L+ LDL +      LP  L  LST + ++ + +N+  +      +N
Sbjct: 272 N------TFHCFSGLQELDLTATHLSE-LPSGLVGLST-LKKLVLSANKFENLCQISASN 323

Query: 352 LVNLNALGVESNQLAGTI-PLAIGELKSIQILFLNENFLR--GTIPSSLGNLTLLTQLIL 408
             +L  L ++ N     +    +  L++++ L L+ + +         L NL+ L  L L
Sbjct: 324 FPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNL 383

Query: 409 EVNNLQGKIPPSNGNCQNLILLTTRKNKLSGIVPRQLLRIITLSVLLDLSDNLLSGHFPT 468
             N        +   C  L LL     +L     +   + + L  +L+LS +LL      
Sbjct: 384 SYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQ 443

Query: 469 KVGNLKNLVSLDISSNMFSGEI---PTTLGGCTSLEYLGMQDNSFTISIPSTLSSLKSIT 525
               L  L  L++  N F         +L     LE L +     +       +SLK + 
Sbjct: 444 LFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMN 503

Query: 526 ELDLSRNNLSGHIPQYLENLSFLLFLNMSYNHFEGKVP 563
            +DLS N L+    + L +L   ++LN++ NH    +P
Sbjct: 504 HVDLSHNRLTSSSIEALSHLK-GIYLNLASNHISIILP 540

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  125 bits (316), Expect = 1e-30
 Identities = 74/366 (20%), Positives = 128/366 (34%), Gaps = 18/366 (4%)

Query: 16  NNSINLCQWTGVTCGHRRQRVTGLDLRHQSVGGVLSPFVGNLNF--LRSINLPNNSFRGK 73
             + NL            Q +            +       L    + SINL  + F   
Sbjct: 210 GGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNI 269

Query: 74  IPHEVGNLFRLQNLTLTNNYFLGKILTDLSHCSNLMKFEASNNKLEGEIPVKISNLLMLQ 133
             +       LQ L LT  + L ++ + L   S L K   S NK E    +  SN   L 
Sbjct: 270 SSNTFHCFSGLQELDLTATH-LSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLT 328

Query: 134 ILNIAENHLKGQL-PASIGNLSALQEIDVRGNRLG--GRIPSTISHVRNLISFNVAYNQF 190
            L+I  N  + +L    + NL  L+E+D+  + +         + ++ +L S N++YN+ 
Sbjct: 329 HLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEP 388

Query: 191 SGMIPPI-YNISSLQYIFIHTNRFHGSVPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNA 249
             +          L+ + +   R           NL  L+  ++S + L  S +      
Sbjct: 389 LSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGL 448

Query: 250 TNLQGLEINRNLFSGKVSI---NFSRLQNLSRLNLGENNLGTGTTNDLDFITLLTNCTKL 306
             LQ L +  N F         +   L  L  L L   +L +   +        T+   +
Sbjct: 449 PALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQH------AFTSLKMM 502

Query: 307 EVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQISDTIPDVIANLVNLNALGVESNQLA 366
             +DL  NR       +L++L      + + SN IS  +P ++  L     + +  N L 
Sbjct: 503 NHVDLSHNRLTSSSIEALSHLKGIY--LNLASNHISIILPSLLPILSQQRTINLRQNPLD 560

Query: 367 GTIPLA 372
            T    
Sbjct: 561 CTCSNI 566

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  198 bits (505), Expect = 3e-56
 Identities = 98/540 (18%), Positives = 184/540 (34%), Gaps = 33/540 (6%)

Query: 36  VTGLDLRHQSVGGVLSPFVGNLNFLRSINLPNNSFRGKIPHEVGNLFRLQNLTLTNNYFL 95
              +DL    +  + S    N + L+ ++L               L  L NL LT N   
Sbjct: 34  TKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQ 93

Query: 96  GKILTDLSHCSNLMKFEASNNKLEGEIPVKISNLLMLQILNIAENHLKG-QLPASIGNLS 154
                  S  ++L    A   KL       I  L+ L+ LN+A N +   +LPA   NL+
Sbjct: 94  SFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLT 153

Query: 155 ALQEIDVRGNRLGGRIPSTISHVRNL----ISFNVAYNQFSGMIPPIYNISSLQYIFIHT 210
            L  +D+  N +     + +  +R      +S +++ N    +    +    L  + +  
Sbjct: 154 NLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRG 213

Query: 211 NRFHGSVPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLE--------INRNLF 262
           N    ++      NL  L    +            +   + ++GL         +     
Sbjct: 214 NFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTND 273

Query: 263 SGKVSINFSRLQNLSRLNLGENNLGTGTTNDLDFITLLTNCTKLEVLDLHSNRFGGVLPF 322
                + F  L N+S ++L   ++          +  +    K + L +   +       
Sbjct: 274 FSDDIVKFHCLANVSAMSLAGVSIKY--------LEDVPKHFKWQSLSIIRCQLKQFPTL 325

Query: 323 SLANLSTTMTEIAIGSNQISDTIPDVIANLVNLNALGVESNQLAGTIPLAIGELK--SIQ 380
            L  L      + +  N+ S  I      L +L+ L +  N L+ +   +  +L   S++
Sbjct: 326 DLPFL----KSLTLTMNKGS--ISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLR 379

Query: 381 ILFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSN-GNCQNLILLTTRKNKLSG 439
            L L+ N     + ++   L  L  L  + + L+     S   + + L+ L         
Sbjct: 380 HLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKI 438

Query: 440 IVPRQLLRIITLSVLLDLSDNLLSGHFPTKV-GNLKNLVSLDISSNMFSGEIPTTLGGCT 498
                 L + +L+ L  ++ N    +  + V  N  NL  LD+S                
Sbjct: 439 DFDGIFLGLTSLNTL-KMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLH 497

Query: 499 SLEYLGMQDNSFTISIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLLFLNMSYNHF 558
            L+ L M  N+      S  + L S++ LD S N +             L F N++ N  
Sbjct: 498 RLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSV 557

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 74.3 bits (183), Expect = 3e-14
 Identities = 32/146 (21%), Positives = 46/146 (31%), Gaps = 5/146 (3%)

Query: 415 GKIPPSNGNCQNLILLTTRKNKLSGIVPRQLLRIITLSVLLDLSDNLLSGHFPTKVGNLK 474
           G + P      N+        KLS + P  +         +DLS N L         N  
Sbjct: 2   GSLNPCIEVVPNITYQCMD-QKLSKV-PDDIPSSTKN---IDLSFNPLKILKSYSFSNFS 56

Query: 475 NLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTISIPSTLSSLKSITELDLSRNNL 534
            L  LD+S             G   L  L +  N      P + S L S+  L      L
Sbjct: 57  ELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKL 116

Query: 535 SGHIPQYLENLSFLLFLNMSYNHFEG 560
           +      +  L  L  LN+++N    
Sbjct: 117 ASLESFPIGQLITLKKLNVAHNFIHS 142

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  160 bits (406), Expect = 2e-43
 Identities = 114/508 (22%), Positives = 189/508 (37%), Gaps = 68/508 (13%)

Query: 56  NLNFLRSINLPNNSFRGKIPHEVGNLFRLQNLTLTNNYFLGKILTDLSHCSNLMKFEASN 115
            L       L   +    +     +L ++  L         K +  + + +NL +   SN
Sbjct: 22  ALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGI--KSIDGVEYLNNLTQINFSN 77

Query: 116 NKLEGEIPVKISNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTIS 175
           N+L    P  + NL  L  + +  N +       + NL+ L  + +  N++       + 
Sbjct: 78  NQLTDITP--LKNLTKLVDILMNNNQIAD--ITPLANLTNLTGLTLFNNQI--TDIDPLK 131

Query: 176 HVRNLISFNVAYNQFSGMIPPIYNISSLQYIFIHTNRFHGSVPLDNGVNLPNLRYFSISG 235
           ++ NL    ++ N  S  I  +  ++SLQ +    N+     PL N   L  L    IS 
Sbjct: 132 NLTNLNRLELSSNTISD-ISALSGLTSLQQLSFG-NQVTDLKPLAN---LTTLERLDISS 186

Query: 236 NNLTGSLQDSLSNATNLQGLEINRNLFSGKVSINFSRLQNLSRLNLGENNLGTGTTNDLD 295
           N ++      L+  TNL+ L    N  S         L NL  L+L  N L         
Sbjct: 187 NKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQLKD------- 235

Query: 296 FITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQISDTIPDVIANLVNL 355
            I  L + T L  LDL +N+   + P S   L T +TE+ +G+NQIS+  P  +A L  L
Sbjct: 236 -IGTLASLTNLTDLDLANNQISNLAPLS--GL-TKLTELKLGANQISNISP--LAGLTAL 289

Query: 356 NALGVESNQLAGTIPLAIGELKSIQILFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQG 415
             L +  NQL    P  I  LK++  L L  N +    P  + +LT L +L    N +  
Sbjct: 290 TNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSD 345

Query: 416 KIPPSNGNCQNLILLTTRKNKLSGIVPRQLLRIITLSVLLDLSDNLLSGHFPTKVGNLKN 475
               S  N  N+  L+   N++S + P                           + NL  
Sbjct: 346 --VSSLANLTNINWLSAGHNQISDLTP---------------------------LANLTR 376

Query: 476 LVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTISIPSTLSSLKSITELDLSRNNLS 535
           +  L ++   ++          +    +        +  P+T+S   S TE D++ N  S
Sbjct: 377 ITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTG--ALIAPATISDGGSYTEPDITWNLPS 434

Query: 536 GHIPQYLENLSFLLFLNMSYNHFEGKVP 563
               +     S  + +      F G V 
Sbjct: 435 Y-TNEVSYTFSQPVTIGKGTTTFSGTVT 461

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  151 bits (384), Expect = 2e-40
 Identities = 110/467 (23%), Positives = 185/467 (39%), Gaps = 68/467 (14%)

Query: 83  RLQNLTLTNNYFLGKILTDLSHCSNLMKFEASNNKLEGEIPVKISNLLMLQILNIAENHL 142
            L + T+T +  + +I    +  +  MK       +   +    ++L  +  L      +
Sbjct: 2   PLGSATITQDTPINQI-FTDTALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGI 58

Query: 143 KGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVAYNQFSGMIPPIYNISS 202
           K      +  L+ L +I+   N+L    P  + ++  L+   +  NQ +  I P+ N+++
Sbjct: 59  KS--IDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIAD-ITPLANLTN 113

Query: 203 LQYIFIHTNRFHGSVPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINRNLF 262
           L  + +  N+     PL N   L NL    +S N ++     +LS  T+LQ L     + 
Sbjct: 114 LTGLTLFNNQITDIDPLKN---LTNLNRLELSSNTISDI--SALSGLTSLQQLSFGNQVT 168

Query: 263 SGKVSINFSRLQNLSRLNLGENNLGTGTTNDLDFITLLTNCTKLEVLDLHSNRFGGVLPF 322
                   + L  L RL++  N +          I++L   T LE L   +N+   + P 
Sbjct: 169 D---LKPLANLTTLERLDISSNKVSD--------ISVLAKLTNLESLIATNNQISDITPL 217

Query: 323 S-LANLSTTMTEIAIGSNQISDTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSIQI 381
             L NL     E+++  NQ+ D     +A+L NL  L + +NQ++   PL    L  +  
Sbjct: 218 GILTNL----DELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAPL--SGLTKLTE 269

Query: 382 LFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSNGNCQNLILLTTRKNKLSGIV 441
           L L  N +    P  L  LT LT L L  N L+        N +NL  LT   N +S I 
Sbjct: 270 LKLGANQISNISP--LAGLTALTNLELNENQLED--ISPISNLKNLTYLTLYFNNISDIS 325

Query: 442 PRQLLRIITLSVLLDLSDNLLSGHFPTKVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLE 501
           P                           V +L  L  L   +N  S    ++L   T++ 
Sbjct: 326 P---------------------------VSSLTKLQRLFFYNNKVSD--VSSLANLTNIN 356

Query: 502 YLGMQDNSFTISIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFL 548
           +L    N   IS  + L++L  IT+L L+    +     Y  N+S  
Sbjct: 357 WLSAGHNQ--ISDLTPLANLTRITQLGLNDQAWTNAPVNYKANVSIP 401

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  140 bits (356), Expect = 1e-36
 Identities = 108/457 (23%), Positives = 185/457 (40%), Gaps = 44/457 (9%)

Query: 36  VTGLDLRHQSVGGVLSPFVGNLNFLRSINLPNNSFRGKIPHEVGNLFRLQNLTLTNNYFL 95
           VT L      +  +    V  LN L  IN  NN      P  + NL +L ++ + NN   
Sbjct: 48  VTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQI- 102

Query: 96  GKILTDLSHCSNLMKFEASNNKLEGEIPVKISNLLMLQILNIAENHLKGQLPASIGNLSA 155
              +T L++ +NL      NN++    P  + NL  L  L ++ N +     +++  L++
Sbjct: 103 -ADITPLANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISD--ISALSGLTS 157

Query: 156 LQEIDVRGNRLGGRIPSTISHVRNLISFNVAYNQFSGMIPPIYNISSLQYIFIHTNRFHG 215
           LQ++              ++++  L   +++ N+ S  I  +  +++L+ +    N+   
Sbjct: 158 LQQLSFGNQVTD---LKPLANLTTLERLDISSNKVSD-ISVLAKLTNLESLIATNNQISD 213

Query: 216 SVPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINRNLFSGKVSINFSRLQN 275
             PL     L NL   S++GN L      +L++ TNL  L++  N  S       S L  
Sbjct: 214 ITPLG---ILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISN--LAPLSGLTK 266

Query: 276 LSRLNLGENNLGTGTTNDLDFITLLTNCTKLEVLDLHSNRFGGVLPFS-LANLSTTMTEI 334
           L+ L LG N +          I+ L   T L  L+L+ N+   + P S L NL    T +
Sbjct: 267 LTELKLGANQISN--------ISPLAGLTALTNLELNENQLEDISPISNLKNL----TYL 314

Query: 335 AIGSNQISDTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSIQILFLNENFLRGTIP 394
            +  N ISD  P  +++L  L  L   +N++  +   ++  L +I  L    N +    P
Sbjct: 315 TLYFNNISDISP--VSSLTKLQRLFFYNNKV--SDVSSLANLTNINWLSAGHNQISDLTP 370

Query: 395 SSLGNLTLLTQLILEVNNLQGKIPPSNGNCQNLILLTTRKNKLSGIVPRQLLRIITLSVL 454
             L NLT +TQL L              N      +      L  I P  +    + +  
Sbjct: 371 --LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGAL--IAPATISDGGSYTE- 425

Query: 455 LDLSDNLLSGHFPTKVGNLKNLVSLDISSNMFSGEIP 491
            D++ NL S             V++   +  FSG + 
Sbjct: 426 PDITWNLPSY-TNEVSYTFSQPVTIGKGTTTFSGTVT 461

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  152 bits (385), Expect = 7e-40
 Identities = 105/518 (20%), Positives = 190/518 (36%), Gaps = 34/518 (6%)

Query: 36  VTGLDLRHQSVGGVLSPFVGNLNFLRSINLPNNSFRGKIPHEVGNLFRLQNLTLTNNYFL 95
              LDL    +  + S    +   L+ ++L     +        +L  L  L LT N   
Sbjct: 30  TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 89

Query: 96  GKILTDLSHCSNLMKFEASNNKLEGEIPVKISNLLMLQILNIAENHLK-GQLPASIGNLS 154
              L   S  S+L K  A    L       I +L  L+ LN+A N ++  +LP    NL+
Sbjct: 90  SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLT 149

Query: 155 ALQEIDVRGNRLGGRIPSTISHVRNL----ISFNVAYNQFSGMIPPIYNISSLQYIFIHT 210
            L+ +D+  N++     + +  +  +    +S +++ N  + + P  +    L  + +  
Sbjct: 150 NLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRN 209

Query: 211 NRFHGSVPLDNGVNLPNLRYFSI------SGNNLTGSLQDSLSNATNLQGLEINRN---L 261
           N    +V       L  L    +      +  NL    + +L    NL   E        
Sbjct: 210 NFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDY 269

Query: 262 FSGKVSINFSRLQNLSRLNLGENNLGTGTTNDLDFITLLTNCTKLEVLDLHSNRFGGVLP 321
           +   +   F+ L N+S  +L    +       +   +       LE+++    +F  +  
Sbjct: 270 YLDDIIDLFNCLTNVSSFSLVSVTI-----ERVKDFSYNFGWQHLELVNCKFGQFPTLKL 324

Query: 322 FSLANLSTTMTEIAIGSNQISDTIPDVIANLVNLNALGVESNQLA--GTIPLAIGELKSI 379
            SL  L+         SN+  +   +V  +L +L  L +  N L+  G    +     S+
Sbjct: 325 KSLKRLT-------FTSNKGGNAFSEV--DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSL 375

Query: 380 QILFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSN-GNCQNLILLTTRKNKLS 438
           + L L+ N +  T+ S+   L  L  L  + +NL+     S   + +NLI L        
Sbjct: 376 KYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR 434

Query: 439 GIVPRQLLRIITLSVLLDLSDNLLSGHFPTKV-GNLKNLVSLDISSNMFSGEIPTTLGGC 497
                    + +L VL  ++ N    +F   +   L+NL  LD+S        PT     
Sbjct: 435 VAFNGIFNGLSSLEVL-KMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSL 493

Query: 498 TSLEYLGMQDNSFTISIPSTLSSLKSITELDLSRNNLS 535
           +SL+ L M  N            L S+ ++ L  N   
Sbjct: 494 SSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWD 531

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  122 bits (309), Expect = 7e-30
 Identities = 86/469 (18%), Positives = 149/469 (31%), Gaps = 40/469 (8%)

Query: 114 SNNKLEGEIPVKISNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPST 173
                  +IP  +      + L+++ N L+     S  +   LQ +D+    +       
Sbjct: 15  MELNFY-KIPDNLPFST--KNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGA 71

Query: 174 ISHVRNLISFNVAYNQFSGMIPPI-YNISSLQYIFIHTNRFHGSVPLDNGVNLPNLRYFS 232
              + +L +  +  N    +       +SSLQ +         S+      +L  L+  +
Sbjct: 72  YQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELN 130

Query: 233 ISGNNLT-GSLQDSLSNATNLQGLEINRNLFSGKVSINFSRLQNLS----RLNLGENNLG 287
           ++ N +    L +  SN TNL+ L+++ N        +   L  +      L+L  N + 
Sbjct: 131 VAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN 190

Query: 288 TGTTNDLDFITLLTNCTKLEVLDLHSNRFGGVLP----FSLANLSTTMTEIAI--GSNQI 341
                    I       +L  L L +N     +       LA L      +        +
Sbjct: 191 FIQPGAFKEI-------RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNL 243

Query: 342 SDTIPDVIANLVNLNALGVESNQL---AGTIPLAIGELKSIQILFLNENFLRGTIPSS-L 397
                  +  L NL         L      I      L ++    L    +      S  
Sbjct: 244 EKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYN 303

Query: 398 GNLTLLTQLILEVNNLQGKIPPSNGNCQNLILLTTRKNKLSGIVPRQLLRIITLSVLLDL 457
                L  +  +               ++L  LT   NK         L  +     LDL
Sbjct: 304 FGWQHLELVNCKFGQFP------TLKLKSLKRLTFTSNKGGNAFSEVDLPSLEF---LDL 354

Query: 458 SDNLLS--GHFPTKVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFT-ISI 514
           S N LS  G          +L  LD+S N     + +   G   LE+L  Q ++   +S 
Sbjct: 355 SRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSE 413

Query: 515 PSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLLFLNMSYNHFEGKVP 563
            S   SL+++  LD+S  +           LS L  L M+ N F+    
Sbjct: 414 FSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFL 462

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  121 bits (306), Expect = 2e-29
 Identities = 82/487 (16%), Positives = 154/487 (31%), Gaps = 44/487 (9%)

Query: 84  LQNLTLTNNYFLGKILTDLSHCSNLMKFEASNNKLEGEIPVKISNLLMLQILNIAENHLK 143
            +NL L+ N               L   + S  +++        +L  L  L +  N ++
Sbjct: 30  TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 89

Query: 144 GQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVAYNQFSGMIPP--IYNIS 201
                +   LS+LQ++      L       I H++ L   NVA+N       P    N++
Sbjct: 90  SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLT 149

Query: 202 SLQYIFIHTNRFHGSVPLDNGVNLPNLRYFSI----SGNNLTGSLQDSLSNATNLQGLEI 257
           +L+++ + +N+   S+   +   L  +   ++    S N +   +Q        L  L +
Sbjct: 150 NLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLHKLTL 207

Query: 258 NRNLFSGKVSIN-FSRLQNLSRLNLGENNLGTGTTNDLDFITLLTNCTKLEVLDLHSNRF 316
             N  S  V       L  L    L           +    + L     L + +      
Sbjct: 208 RNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYL 267

Query: 317 GGVLPFSLANLSTTMTEIAIGSNQISDTIPDVIANLVNLNALGVESNQLAGTIPLAI-GE 375
                                 +   D I D+   L N+++  + S  +      +    
Sbjct: 268 ----------------------DYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFG 305

Query: 376 LKSIQILFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSNGNCQNLILLTTRKN 435
            + ++++             SL  LT          + +G    S  +  +L  L   +N
Sbjct: 306 WQHLELVNCKFGQFPTLKLKSLKRLTF--------TSNKGGNAFSEVDLPSLEFLDLSRN 357

Query: 436 KLSGI-VPRQLLRIITLSVLLDLSDNLLSGHFPTKVGNLKNLVSLDISSNMFSGEIPT-T 493
            LS      Q     T    LDLS N +     +    L+ L  LD   +          
Sbjct: 358 GLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSV 416

Query: 494 LGGCTSLEYLGMQDNSFTISIPSTLSSLKSITELDLSRNNLSGHIPQY-LENLSFLLFLN 552
                +L YL +      ++     + L S+  L ++ N+   +        L  L FL+
Sbjct: 417 FLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLD 476

Query: 553 MSYNHFE 559
           +S    E
Sbjct: 477 LSQCQLE 483

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 80.9 bits (200), Expect = 3e-16
 Identities = 50/318 (15%), Positives = 104/318 (32%), Gaps = 39/318 (12%)

Query: 56  NLNFLRSINLPNNSFRGKIPHEVGNLFRLQNLTLTNNYFLGKILTDLSHCSNLMKFEASN 115
           NL          + +   I      L  + + +L +     + + D S+       E  N
Sbjct: 256 NLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTI--ERVKDFSYNFGWQHLELVN 313

Query: 116 NKLEGEIPVKISNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLG--GRIPST 173
            K      +K+ +L   + L    N           +L +L+ +D+  N L   G    +
Sbjct: 314 CKFGQFPTLKLKSL---KRLTFTSNKGGNAFSEV--DLPSLEFLDLSRNGLSFKGCCSQS 368

Query: 174 ISHVRNLISFNVAYNQFSGMIPPIYNISSLQYIFIHTNRFHGSVPLDNGVNLPNLRYFSI 233
                +L   ++++N    M      +  L+++    +           ++L NL Y  I
Sbjct: 369 DFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDI 428

Query: 234 SGNNLTGSLQDSLSNATNLQGLEINRNLFSGKVSINFSRLQNLSRLNLGENNLGTGTTND 293
           S  +   +                            F+ L +L  L +  N+       D
Sbjct: 429 SHTHTRVAFNGI------------------------FNGLSSLEVLKMAGNSFQENFLPD 464

Query: 294 LDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQISDTIPDVIANLV 353
           +      T    L  LDL   +   + P +  +L +++  + + SNQ+      +   L 
Sbjct: 465 I-----FTELRNLTFLDLSQCQLEQLSPTAFNSL-SSLQVLNMASNQLKSVPDGIFDRLT 518

Query: 354 NLNALGVESNQLAGTIPL 371
           +L  + + +N    + P 
Sbjct: 519 SLQKIWLHTNPWDCSCPR 536

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  139 bits (353), Expect = 6e-37
 Identities = 87/405 (21%), Positives = 155/405 (38%), Gaps = 61/405 (15%)

Query: 132 LQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVAYNQFS 191
              L      +    P    +L+      ++   +      T   + ++    VA  + +
Sbjct: 2   AATLATLPAPINQIFP--DADLAEGIRAVLQKASVTD--VVTQEELESITKLVVAGEKVA 57

Query: 192 GMIPPIYNISSLQYIFIHTNRFHGSVPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATN 251
             I  I  +++L+Y+ ++ N+     PL N   L  L    I  N +T     +L N TN
Sbjct: 58  S-IQGIEYLTNLEYLNLNGNQITDISPLSN---LVKLTNLYIGTNKITDI--SALQNLTN 111

Query: 252 LQGLEINRNLFSGKVSINFSRLQNLSRLNLGENNLGTGTTNDLDFITLLTNCTKLEVLDL 311
           L+ L +N +  S       + L  +  LNLG N+  +        ++ L+N T L  L +
Sbjct: 112 LRELYLNEDNISD--ISPLANLTKMYSLNLGANHNLS-------DLSPLSNMTGLNYLTV 162

Query: 312 HSNRFGGVLPFS-LANLSTTMTEIAIGSNQISDTIPDVIANLVNLNALGVESNQLAGTIP 370
             ++   V P + L +L      +++  NQI D  P  +A+L +L+      NQ+    P
Sbjct: 163 TESKVKDVTPIANLTDL----YSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP 216

Query: 371 LAIGELKSIQILFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSNGNCQNLILL 430
           +    +  +  L +  N +    P  L NL+ LT L +  N +      +  +   L +L
Sbjct: 217 V--ANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISD--INAVKDLTKLKML 270

Query: 431 TTRKNKLSGIVPRQLLRIITLSVLLDLSDNLLSGHFPTKVGNLKNLVSLDISSNMFSGEI 490
               N++S I                             + NL  L SL +++N    E 
Sbjct: 271 NVGSNQISDISV---------------------------LNNLSQLNSLFLNNNQLGNED 303

Query: 491 PTTLGGCTSLEYLGMQDNSFTISIPSTLSSLKSITELDLSRNNLS 535
              +GG T+L  L +  N  T   P  L+SL  +   D +   + 
Sbjct: 304 MEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  136 bits (346), Expect = 5e-36
 Identities = 81/367 (22%), Positives = 143/367 (38%), Gaps = 40/367 (10%)

Query: 194 IPPIYNISSLQYIFIHTNRFHGSVPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQ 253
           I P  +++      +        V  +    L ++    ++G  +       +   TNL+
Sbjct: 15  IFPDADLAEGIRAVLQKASVTDVVTQEE---LESITKLVVAGEKVAS--IQGIEYLTNLE 69

Query: 254 GLEINRNLFSGKVSINFSRLQNLSRLNLGENNLGTGTTNDLDFITLLTNCTKLEVLDLHS 313
            L +N N  +       S L  L+ L +G N +          I+ L N T L  L L+ 
Sbjct: 70  YLNLNGNQITD--ISPLSNLVKLTNLYIGTNKITD--------ISALQNLTNLRELYLNE 119

Query: 314 NRFGGVLPFS-LANLSTTMTEIAIGSNQISDTIPDVIANLVNLNALGVESNQLAGTIPLA 372
           +    + P + L  +      + +G+N    +    ++N+  LN L V  +++    P  
Sbjct: 120 DNISDISPLANLTKM----YSLNLGANHNL-SDLSPLSNMTGLNYLTVTESKVKDVTP-- 172

Query: 373 IGELKSIQILFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSNGNCQNLILLTT 432
           I  L  +  L LN N +    P  L +LT L      VN +    P    N   L  L  
Sbjct: 173 IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITPV--ANMTRLNSLKI 228

Query: 433 RKNKLSGIVPRQLLRIITLSVL--LDLSDNLLSGHFPTKVGNLKNLVSLDISSNMFSGEI 490
             NK++ + P     +  LS L  L++  N +S      V +L  L  L++ SN  S   
Sbjct: 229 GNNKITDLSP-----LANLSQLTWLEIGTNQISD--INAVKDLTKLKMLNVGSNQISD-- 279

Query: 491 PTTLGGCTSLEYLGMQDNSFTISIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLLF 550
            + L   + L  L + +N         +  L ++T L LS+N+++   P  L +LS +  
Sbjct: 280 ISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDS 337

Query: 551 LNMSYNH 557
            + +   
Sbjct: 338 ADFANQV 344

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  135 bits (342), Expect = 2e-35
 Identities = 75/360 (20%), Positives = 151/360 (41%), Gaps = 34/360 (9%)

Query: 56  NLNFLRSINLPNNSFRGKIPHEVGNLFRLQNLTLTNNYFLGKILTDLSHCSNLMKFEASN 115
           +L       L   S    +      L  +  L +         +  + + +NL     + 
Sbjct: 20  DLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKV--ASIQGIEYLTNLEYLNLNG 75

Query: 116 NKLEGEIPVKISNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTIS 175
           N++    P  +SNL+ L  L I  N +     +++ NL+ L+E+ +  + +     S ++
Sbjct: 76  NQITDISP--LSNLVKLTNLYIGTNKITD--ISALQNLTNLRELYLNEDNISD--ISPLA 129

Query: 176 HVRNLISFNVAYNQFSGMIPPIYNISSLQYIFIHTNRFHGSVPLDNGVNLPNLRYFSISG 235
           ++  + S N+  N     + P+ N++ L Y+ +  ++     P+    NL +L   S++ 
Sbjct: 130 NLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTPIA---NLTDLYSLSLNY 186

Query: 236 NNLTGSLQDSLSNATNLQGLEINRNLFSGKVSINFSRLQNLSRLNLGENNLGTGTTNDLD 295
           N +       L++ T+L       N  +       + +  L+ L +G N +         
Sbjct: 187 NQIEDI--SPLASLTSLHYFTAYVNQITD--ITPVANMTRLNSLKIGNNKITD------- 235

Query: 296 FITLLTNCTKLEVLDLHSNRFGGVLPFS-LANLSTTMTEIAIGSNQISDTIPDVIANLVN 354
            ++ L N ++L  L++ +N+   +     L  L      + +GSNQISD    V+ NL  
Sbjct: 236 -LSPLANLSQLTWLEIGTNQISDINAVKDLTKL----KMLNVGSNQISD--ISVLNNLSQ 288

Query: 355 LNALGVESNQLAGTIPLAIGELKSIQILFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQ 414
           LN+L + +NQL       IG L ++  LFL++N +    P  L +L+ +         ++
Sbjct: 289 LNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  127 bits (321), Expect = 1e-32
 Identities = 79/345 (22%), Positives = 143/345 (41%), Gaps = 37/345 (10%)

Query: 224 NLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINRNLFSGKVSI-NFSRLQNLSRLNLG 282
           +L       +   ++T  +  +     ++  L +     +   SI     L NL  LNL 
Sbjct: 20  DLAEGIRAVLQKASVTDVV--TQEELESITKLVVAGEKVA---SIQGIEYLTNLEYLNLN 74

Query: 283 ENNLGTGTTNDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQIS 342
            N +          I+ L+N  KL  L + +N+   +      NL T + E+ +  + IS
Sbjct: 75  GNQITD--------ISPLSNLVKLTNLYIGTNKITDISALQ--NL-TNLRELYLNEDNIS 123

Query: 343 DTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSIQILFLNENFLRGTIPSSLGNLTL 402
           D  P  +ANL  + +L + +N     +   +  +  +  L + E+ ++   P  + NLT 
Sbjct: 124 DISP--LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IANLTD 178

Query: 403 LTQLILEVNNLQGKIPPSNGNCQNLILLTTRKNKLSGIVPRQLLRIITLSVL--LDLSDN 460
           L  L L  N ++   P    +  +L   T   N+++ I P     +  ++ L  L + +N
Sbjct: 179 LYSLSLNYNQIEDISPL--ASLTSLHYFTAYVNQITDITP-----VANMTRLNSLKIGNN 231

Query: 461 LLSGHFPTKVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTISIPSTLSS 520
            ++   P  + NL  L  L+I +N  S      +   T L+ L +  N   IS  S L++
Sbjct: 232 KITDLSP--LANLSQLTWLEIGTNQISD--INAVKDLTKLKMLNVGSNQ--ISDISVLNN 285

Query: 521 LKSITELDLSRNNLSGHIPQYLENLSFLLFLNMSYNHFEGKVPIE 565
           L  +  L L+ N L     + +  L+ L  L +S NH     P+ 
Sbjct: 286 LSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRPLA 330

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 65.6 bits (161), Expect = 9e-12
 Identities = 36/161 (22%), Positives = 66/161 (40%), Gaps = 9/161 (5%)

Query: 52  PFVGNLNFLRSINLPNNSFRGKIPHEVGNLFRLQNLTLTNNYFLGKILTDLSHCSNLMKF 111
             + +L  L       N      P  V N+ RL +L + NN      L+ L++ S L   
Sbjct: 193 SPLASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKI--TDLSPLANLSQLTWL 248

Query: 112 EASNNKLEGEIPVKISNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIP 171
           E   N++       + +L  L++LN+  N +     + + NLS L  + +  N+LG    
Sbjct: 249 EIGTNQISDINA--VKDLTKLKMLNVGSNQISD--ISVLNNLSQLNSLFLNNNQLGNEDM 304

Query: 172 STISHVRNLISFNVAYNQFSGMIPPIYNISSLQYIFIHTNR 212
             I  + NL +  ++ N  +  I P+ ++S +         
Sbjct: 305 EVIGGLTNLTTLFLSQNHITD-IRPLASLSKMDSADFANQV 344

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 53.3 bits (129), Expect = 8e-08
 Identities = 26/115 (22%), Positives = 50/115 (43%), Gaps = 6/115 (5%)

Query: 52  PFVGNLNFLRSINLPNNSFRGKIPHEVGNLFRLQNLTLTNNYFLGKILTDLSHCSNLMKF 111
             + NL+ L  + +  N       + V +L +L+ L + +N      ++ L++ S L   
Sbjct: 237 SPLANLSQLTWLEIGTNQISD--INAVKDLTKLKMLNVGSNQI--SDISVLNNLSQLNSL 292

Query: 112 EASNNKLEGEIPVKISNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRL 166
             +NN+L  E    I  L  L  L +++NH+    P  + +LS +   D     +
Sbjct: 293 FLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVI 345

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  143 bits (361), Expect = 4e-36
 Identities = 95/542 (17%), Positives = 181/542 (33%), Gaps = 57/542 (10%)

Query: 64  NLPNNSFRG--KIPHEVGNLFRLQNLTLTNNYFLGKILTDLSHCSNLMKFEASNNKLEGE 121
            +    F    ++P     L   + L L+ NY      +       L   E  +      
Sbjct: 7   RIAFYRFCNLTQVPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLT 63

Query: 122 IPVKI-SNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRI--PSTISHVR 178
           I  +   NL  L+IL++  + +    P +   L  L E+ +    L   +       +++
Sbjct: 64  IDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLK 123

Query: 179 NLISFNVAYNQFSGMIPP--IYNISSLQYIFIHTNRFHGSVPLD-NGVNLPNLRYFSISG 235
            L   +++ NQ   +        ++SL+ I   +N+       +   +    L +FS++ 
Sbjct: 124 ALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAA 183

Query: 236 NNLTGSLQDSLSNATN------LQGLEINRNLFSGKVSINFSR------------LQNLS 277
           N+L   +        N      L+ L+++ N ++  ++ NFS               ++ 
Sbjct: 184 NSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIM 243

Query: 278 RLNLGENNLGTGTTNDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSTTMTEIAIG 337
               G +N+      D +    L   + +  LDL       +       L   +  + + 
Sbjct: 244 GAGFGFHNI---KDPDQNTFAGLAR-SSVRHLDLSHGFVFSLNSRVFETL-KDLKVLNLA 298

Query: 338 SNQISDTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSIQILFLNENFLRGTIPSSL 397
            N+I+    +    L NL  L +  N L          L  +  + L +N +      + 
Sbjct: 299 YNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTF 358

Query: 398 GNLTLLTQLILEVNNLQ-----GKIPPSNGNCQNLILLTT----------RKNKLSGIVP 442
             L  L  L L  N L        IP    +   L+ L             +N+L  +  
Sbjct: 359 KFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDI 418

Query: 443 RQLLRIITLSVLLDLSDNLLSGHFPTKV-GNLKNLVSLDISSNMFSGEIPT-----TLGG 496
              L  +    +L L+ N  S     +      +L  L +  NM      T        G
Sbjct: 419 LYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEG 478

Query: 497 CTSLEYLGMQDNSFTISIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLLFLNMSYN 556
            + L+ L +  N      P   S L ++  L L+ N L+  +       + L  L++S N
Sbjct: 479 LSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLT-VLSHND-LPANLEILDISRN 536

Query: 557 HF 558
             
Sbjct: 537 QL 538

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  139 bits (352), Expect = 6e-35
 Identities = 107/556 (19%), Positives = 200/556 (35%), Gaps = 55/556 (9%)

Query: 36  VTGLDLRHQSVGGVLSPFVGNLNFLRSINLPNNSFRGKIPHEV-GNLFRLQNLTLTNNYF 94
              L L    +  V +     L  L+ + L +      I  E   NL  L+ L L ++  
Sbjct: 26  TERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKI 85

Query: 95  LGKILTDLSHCSNLMKFEASNNKLEGEI--PVKISNLLMLQILNIAENHLKG-QLPASIG 151
                       +L +       L   +       NL  L  L++++N ++   L  S G
Sbjct: 86  YFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFG 145

Query: 152 NLSALQEIDVRGNRLGGRIPSTIS--HVRNLISFNVAYNQFSGMIPPI-------YNISS 202
            L++L+ ID   N++       +     + L  F++A N     +          +    
Sbjct: 146 KLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMV 205

Query: 203 LQYIFIHTNRFH-----------GSVPLDNGVNLPNLRYFSISGNNLTGSLQDSLSN--A 249
           L+ + +  N +                  + +   ++       +N+    Q++ +    
Sbjct: 206 LEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLAR 265

Query: 250 TNLQGLEINRNLFSGKVSINFSRLQNLSRLNLGENNLGTGTTNDLDFITLLTNCTKLEVL 309
           ++++ L+++        S  F  L++L  LNL  N +     N +           L+VL
Sbjct: 266 SSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKI-----NKIA-DEAFYGLDNLQVL 319

Query: 310 DLHSNRFGGVLPFSLANLSTTMTEIAIGSNQISDTIPDVIANLVNLNALGVESNQLAGTI 369
           +L  N  G +   +   L   +  I +  N I+         L  L  L +  N L    
Sbjct: 320 NLSYNLLGELYSSNFYGL-PKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT--- 375

Query: 370 PLAIGELKSIQILFLNENFLRGTIPSSLGNLTL-LTQLILEVNNLQG-KIPPSNGNCQNL 427
              I  + SI  +FL+ N L      +L  + L    + L  N L+   I        +L
Sbjct: 376 --TIHFIPSIPDIFLSGNKL-----VTLPKINLTANLIHLSENRLENLDILYFLLRVPHL 428

Query: 428 ILLTTRKNKLSGIVPRQLLRIITLSVLLDLSDNLLSGHFPTKV-----GNLKNLVSLDIS 482
            +L   +N+ S     Q          L L +N+L   + T++       L +L  L ++
Sbjct: 429 QILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLN 488

Query: 483 SNMFSGEIPTTLGGCTSLEYLGMQDNSFTISIPSTLSSLKSITELDLSRNNLSGHIPQYL 542
            N  +   P      T+L  L +  N  T+   + L +  ++  LD+SRN L    P   
Sbjct: 489 HNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLPA--NLEILDISRNQLLAPNPDVF 546

Query: 543 ENLSFLLFLNMSYNHF 558
            +LS    L++++N F
Sbjct: 547 VSLS---VLDITHNKF 559

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  119 bits (300), Expect = 2e-28
 Identities = 65/397 (16%), Positives = 134/397 (33%), Gaps = 45/397 (11%)

Query: 169 RIPSTISHVRNLISFNVAYNQFSGMIPP--IYNISSLQYIFIHTNRFHGSVPLDNGVNLP 226
           ++P  ++    L    +++N     +       +  LQ + + +     ++  +   NLP
Sbjct: 18  QVPQVLNTTERL---LLSFNYIR-TVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLP 73

Query: 227 NLRYFSISGNNLTGSLQDSLSNATNLQGLEINRNLFSGKVSIN--FSRLQNLSRLNLGEN 284
           NLR   +  + +     D+     +L  L +     S  V  +  F  L+ L+RL+L +N
Sbjct: 74  NLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKN 133

Query: 285 NLGTGTTNDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLS-TTMTEIAIGSNQISD 343
            + +     L           L+ +D  SN+   V    L  L   T++  ++ +N +  
Sbjct: 134 QIRS-----LYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYS 188

Query: 344 TIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSIQILFLNENFLRGTIPSSLGNLTLL 403
            +       +N                        ++IL ++ N     I  +       
Sbjct: 189 RVSVDWGKCMNPF------------------RNMVLEILDVSGNGWTVDITGNF------ 224

Query: 404 TQLILEVNNLQGKIPPSNGNCQNLILLTTRKNKLSGIVPRQLLRIITLSVL-LDLSDNLL 462
                  N +      S     +++      + +          +   SV  LDLS   +
Sbjct: 225 ------SNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFV 278

Query: 463 SGHFPTKVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTISIPSTLSSLK 522
                     LK+L  L+++ N  +        G  +L+ L +  N       S    L 
Sbjct: 279 FSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLP 338

Query: 523 SITELDLSRNNLSGHIPQYLENLSFLLFLNMSYNHFE 559
            +  +DL +N+++    Q  + L  L  L++  N   
Sbjct: 339 KVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT 375

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  127 bits (321), Expect = 7e-33
 Identities = 52/327 (15%), Positives = 108/327 (33%), Gaps = 27/327 (8%)

Query: 240 GSLQDSLSNATNLQGLEINRNLFSGKVSINFSRLQNLSRLNLGENNLGTGTTNDLDFITL 299
           GS      +++  + L    +          S+ Q     +           N       
Sbjct: 2   GSSHHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADR----------NRWHSAWR 51

Query: 300 LTNCTKLEVLDLHSNRFGGVLPFSLANL-STTMTEIAIGSNQISDTIPDVIANLVNLNAL 358
             N    ++               L +        + + S  +    PD    L +L  +
Sbjct: 52  QANSNNPQIETRTGRALK-ATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHM 109

Query: 359 GVESNQLAGTIPLAIGELKSIQILFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIP 418
            +++  L   +P  + +   ++ L L  N LR  +P+S+ +L  L +L +       ++P
Sbjct: 110 TIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELP 167

Query: 419 PSNGNC---------QNLILLTTRKNKLSGIVPRQLLRIITLSVLLDLSDNLLSGHFPTK 469
               +           NL  L      +  + P  +  +  L  L  + ++ LS      
Sbjct: 168 EPLASTDASGEHQGLVNLQSLRLEWTGIRSL-PASIANLQNLKSL-KIRNSPLS-ALGPA 224

Query: 470 VGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTISIPSTLSSLKSITELDL 529
           + +L  L  LD+         P   GG   L+ L ++D S  +++P  +  L  + +LDL
Sbjct: 225 IHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDL 284

Query: 530 SRNNLSGHIPQYLENLSFLLFLNMSYN 556
                   +P  +  L     + +  +
Sbjct: 285 RGCVNLSRLPSLIAQLPANCIILVPPH 311

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  126 bits (318), Expect = 2e-32
 Identities = 60/328 (18%), Positives = 106/328 (32%), Gaps = 26/328 (7%)

Query: 224 NLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINRNLFSGKVSINFSRLQNLSRLNLGE 283
           +          G+       D LS        + NR   + +     +   N        
Sbjct: 10  HSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWR----QANSNNPQIETRTG 65

Query: 284 NNLGTGTTNDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQISD 343
             L        D +   T       L+L S       P     L + +  + I +  +  
Sbjct: 66  RAL----KATADLLEDATQ-PGRVALELRSVPLP-QFPDQAFRL-SHLQHMTIDAAGLM- 117

Query: 344 TIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSIQILFLNENFLRGTIPSSLGNLTL- 402
            +PD +     L  L +  N L   +P +I  L  ++ L +        +P  L +    
Sbjct: 118 ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDAS 176

Query: 403 --------LTQLILEVNNLQGKIPPSNGNCQNLILLTTRKNKLSGIVPRQLLRIITLSVL 454
                   L  L LE   ++  +P S  N QNL  L  R + LS +    +  +  L  L
Sbjct: 177 GEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSAL-GPAIHHLPKLEEL 234

Query: 455 LDLSDNLLSGHFPTKVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTISI 514
            DL       ++P   G    L  L +        +P  +   T LE L ++       +
Sbjct: 235 -DLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRL 293

Query: 515 PSTLSSLKSITELDLSRNNLSGHIPQYL 542
           PS ++ L +   + +   +L   + Q+ 
Sbjct: 294 PSLIAQLPANCIILVP-PHLQAQLDQHR 320

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  108 bits (272), Expect = 4e-26
 Identities = 55/377 (14%), Positives = 111/377 (29%), Gaps = 65/377 (17%)

Query: 48  GVLSPFVGNLNFLRSINLPNNSFRGKIPHEVGNLFRLQNLTLTNNYFLGKILTDLSHCSN 107
           G       + +   ++    ++        +    R  N     +          ++ +N
Sbjct: 2   GSSHHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNA----DRNRWHSAWRQANSNN 57

Query: 108 LMKFEASNNKLEGEIPVKISNLLM--LQILNIAENHLKGQLPASIGNLSALQEIDVRGNR 165
                 +   L+      + +        L +    L  Q P     LS LQ + +    
Sbjct: 58  PQIETRTGRALK-ATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAG 115

Query: 166 LGGRIPSTISHVRNLISFNVAYNQFSGMIPPIYNISSLQYIFIHTNRFHGSVPLDNGVNL 225
           L   +P T+     L +  +A N     +P   +I+                      +L
Sbjct: 116 L-MELPDTMQQFAGLETLTLARNPLRA-LPA--SIA----------------------SL 149

Query: 226 PNLRYFSISGNNLTGSLQDSLSNATNLQGLEINRNLFSGKVSINFSRLQNLSRLNLGENN 285
             LR  SI        L + L++                        L NL  L L    
Sbjct: 150 NRLRELSIRACPELTELPEPLASTDASGEH---------------QGLVNLQSLRLEWTG 194

Query: 286 LGTGTTNDLDFITL---LTNCTKLEVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQIS 342
           +           +L   + N   L+ L + ++     L  ++ +L   + E+ +      
Sbjct: 195 I----------RSLPASIANLQNLKSLKIRNSPLSA-LGPAIHHL-PKLEELDLRGCTAL 242

Query: 343 DTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSIQILFLNENFLRGTIPSSLGNLTL 402
              P +      L  L ++      T+PL I  L  ++ L L        +PS +  L  
Sbjct: 243 RNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPA 302

Query: 403 LTQLILEVNNLQGKIPP 419
              +++   +LQ ++  
Sbjct: 303 NCIILVP-PHLQAQLDQ 318

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 86.5 bits (215), Expect = 9e-19
 Identities = 42/238 (17%), Positives = 83/238 (34%), Gaps = 22/238 (9%)

Query: 39  LDLRHQSVGGVLSPFVGNLNFLRSINLPNNSFRGKIPHEVGNLFRLQNLTLTNNYF---- 94
           L+LR   +          L+ L+ + +       ++P  +     L+ LTL  N      
Sbjct: 86  LELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLRALP 143

Query: 95  --LGKILT-----DLSHCSNLMKFEASNNKLEGEIPVKISNLLMLQILNIAENHLKGQLP 147
             +   L       +  C  L +          +   +   L+ LQ L +    ++  LP
Sbjct: 144 ASIAS-LNRLRELSIRACPELTELPEPLAST--DASGEHQGLVNLQSLRLEWTGIR-SLP 199

Query: 148 ASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVAYNQFSGMIPP-IYNISSLQYI 206
           ASI NL  L+ + +R + L   +   I H+  L   ++         PP     + L+ +
Sbjct: 200 ASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRL 258

Query: 207 FI-HTNRFHGSVPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINRNLFS 263
            +   +    ++PLD    L  L    + G      L   ++       + +  +L +
Sbjct: 259 ILKDCSNLL-TLPLDIH-RLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  129 bits (326), Expect = 4e-32
 Identities = 75/460 (16%), Positives = 162/460 (35%), Gaps = 27/460 (5%)

Query: 106 SNLMKFEASNNKLEGEIPVKISNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNR 165
           + +   + S NK+       +     LQ+L +  + +      +  +L +L+ +D+  N 
Sbjct: 26  AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNH 85

Query: 166 LGGRIPSTISHVRNLISFNVAYNQFSGMIPP--IYNISSLQYIFIHTNRFHGSVPLDNGV 223
           L     S    + +L   N+  N +  +       N+++LQ + I        +   +  
Sbjct: 86  LSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFA 145

Query: 224 NLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINRNLFSGKVSINFSRLQNLSRLNLGE 283
            L +L    I   +L      SL +  ++  L ++ +  +  + I    L ++  L L +
Sbjct: 146 GLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRD 205

Query: 284 NNLGTGTTNDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQISD 343
            NL          + +    + ++ L    +               +  E+      I +
Sbjct: 206 TNL---ARFQFSPLPVDEVSSPMKKLAFRGSVL----------TDESFNELLKLLRYILE 252

Query: 344 TIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSIQILFLNENFLRGTIPSSLGNLTLL 403
                  +           ++      L   E  +I+ L + + +L   + +    L  +
Sbjct: 253 LSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKV 312

Query: 404 TQLILEVNNLQGKIPPSNGNCQNLILLTTRKNKLSGIVPRQLLRIITLSVL--LDLSDNL 461
            ++ +E + +       + + ++L  L   +N +     +          L  L LS N 
Sbjct: 313 KRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNH 372

Query: 462 LS--GHFPTKVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTISIPSTLS 519
           L         +  LKNL SLDIS N F   +P +      + +L +        + + + 
Sbjct: 373 LRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR-VVKTCI- 429

Query: 520 SLKSITELDLSRNNLSGHIPQYLENLSFLLFLNMSYNHFE 559
             +++  LD+S NNL      +L  L     L +S N  +
Sbjct: 430 -PQTLEVLDVSNNNLD-SFSLFLPRLQ---ELYISRNKLK 464

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  125 bits (317), Expect = 5e-31
 Identities = 86/495 (17%), Positives = 183/495 (36%), Gaps = 33/495 (6%)

Query: 84  LQNLTLTNNYFLGKILTDLSHCSNLMKFEASNNKLEGEIPVKISNLLMLQILNIAENHLK 143
           +++L L+ N        DL  C+NL      ++++         +L  L+ L++++NHL 
Sbjct: 28  MKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLS 87

Query: 144 GQLPASIGNLSALQEIDVRGNRLGG-RIPSTISHVRNLISFNVAYNQFSGMIPPIY--NI 200
               +  G LS+L+ +++ GN      + S   ++ NL +  +   +    I  I    +
Sbjct: 88  SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGL 147

Query: 201 SSLQYIFIHTNRFHGSVPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINRN 260
           +SL  + I       +    +  ++ ++ + ++  +     L+      ++++ LE+   
Sbjct: 148 TSLNELEIKALSLR-NYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDT 206

Query: 261 LFSGKVSINFSRLQNLSRLNLGENNLGTGTTNDLDFITLLTNC----TKLEVLDLHSNRF 316
             +          +  S +          T    + +  L       +++E  D   N  
Sbjct: 207 NLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGL 266

Query: 317 GGVLPFSLANLS-------TTMTEIAIGSNQISDTIPDVIANLVNLNALGVESNQLAGTI 369
           G   P     +S        T+  + I    +   +  V + L  +  + VE++++    
Sbjct: 267 GDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVP 326

Query: 370 PLAIGELKSIQILFLNENFLRGTI---PSSLGNLTLLTQLILEVNNLQGKIPPSNGNCQN 426
                 LKS++ L L+EN +        +  G    L  L+L  N+L+  +  +      
Sbjct: 327 CSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLR-SMQKTGEILLT 385

Query: 427 LILLTT---RKNKLSGIVPRQLLRIITLSVLLDLSDNLLSGHFPTKVGNLKNLVSLDISS 483
           L  LT+    +N    + P        +  L +LS   +     T     + L  LD+S+
Sbjct: 386 LKNLTSLDISRNTFHPM-PDSCQWPEKMRFL-NLSSTGIR-VVKT--CIPQTLEVLDVSN 440

Query: 484 NMFSGEIPTTLGGCTSLEYLGMQDNSFTISIPSTLSSLKSITELDLSRNNLSGHIPQYLE 543
           N         L     L+ L +  N    ++P   S    +  + +SRN L        +
Sbjct: 441 NNLD-SFSLFL---PRLQELYISRNKLK-TLPDA-SLFPVLLVMKISRNQLKSVPDGIFD 494

Query: 544 NLSFLLFLNMSYNHF 558
            L+ L  + +  N +
Sbjct: 495 RLTSLQKIWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  122 bits (308), Expect = 8e-30
 Identities = 85/495 (17%), Positives = 162/495 (32%), Gaps = 33/495 (6%)

Query: 60  LRSINLPNNSFRGKIPHEVGNLFRLQNLTLTNNYFLGKILTDLSHCSNLMKFEASNNKLE 119
           ++S++L  N        ++     LQ L L ++              +L   + S+N L 
Sbjct: 28  MKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLS 87

Query: 120 GEIPVKISNLLMLQILNIAENHLKG-QLPASIGNLSALQEIDVRGNRLGGRIP-STISHV 177
                    L  L+ LN+  N  +   + +   NL+ LQ + +        I     + +
Sbjct: 88  SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGL 147

Query: 178 RNLISFNVAYNQFSGMIP-PIYNISSLQYIFIHTNRFHGSVPLDNGVNLPNLRYFSISGN 236
            +L    +            + +I  + ++ +H +     +       L ++RY  +   
Sbjct: 148 TSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDT 206

Query: 237 NLTGSLQDSLSNATNLQGLEINRNLFSGKVSINFSRLQNLSR----------LNLGENNL 286
           NL       L        ++      S     +F+ L  L R           +   N L
Sbjct: 207 NLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGL 266

Query: 287 GTGTTNDLDFITLLTN--CTKLEVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQISDT 344
           G    ++ D ++ L       +  L +        L    + L   +  I + ++++   
Sbjct: 267 GDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLL-EKVKRITVENSKVFLV 325

Query: 345 IPDVIANLVNLNALGVESNQLAGTI---PLAIGELKSIQILFLNENFLR--GTIPSSLGN 399
                 +L +L  L +  N +           G   S+Q L L++N LR        L  
Sbjct: 326 PCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLT 385

Query: 400 LTLLTQLILEVNNLQGKIPPSNGNCQNLILLTTRKNKLSGIVPRQLLRIITLSVLLDLSD 459
           L  LT L +  N     +P S    + +  L      +  +V   + + + +   LD+S+
Sbjct: 386 LKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR-VVKTCIPQTLEV---LDVSN 440

Query: 460 NLLSGHFPTKVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTISIPSTLS 519
           N L   F      L  L  L IS N        +L     L  + +  N           
Sbjct: 441 NNLD-SFSL---FLPRLQELYISRNKLKTLPDASL--FPVLLVMKISRNQLKSVPDGIFD 494

Query: 520 SLKSITELDLSRNNL 534
            L S+ ++ L  N  
Sbjct: 495 RLTSLQKIWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  100 bits (250), Expect = 2e-22
 Identities = 51/343 (14%), Positives = 116/343 (33%), Gaps = 14/343 (4%)

Query: 225 LPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINRNLFSGKVSINFSRLQNLSRLNLGEN 284
              ++   +S N +T      L    NLQ L +  +  +      F  L +L  L+L +N
Sbjct: 25  TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDN 84

Query: 285 NLGTGTTNDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQISDT 344
           +L + +++           + L+ L+L  N +  +   SL    T +  + IG+ +    
Sbjct: 85  HLSSLSSS------WFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSE 138

Query: 345 IP-DVIANLVNLNALGVESNQLAGTIPLAIGELKSIQILFLNENFLRGTIPSSLGNLTLL 403
           I     A L +LN L +++  L      ++  ++ I  L L+ +     +      L+ +
Sbjct: 139 IRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSV 198

Query: 404 TQLILEVNNLQGKIPPSNGNCQNLILLTTRKNKLSGIVPRQLLRIITLSVLLDLSDNLLS 463
             L L   NL           +    +     + S +       ++ L          + 
Sbjct: 199 RYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLL-------RYIL 251

Query: 464 GHFPTKVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTISIPSTLSSLKS 523
                +  +       D + +              ++  L +        + +  S L+ 
Sbjct: 252 ELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEK 311

Query: 524 ITELDLSRNNLSGHIPQYLENLSFLLFLNMSYNHFEGKVPIEC 566
           +  + +  + +      + ++L  L FL++S N    +     
Sbjct: 312 VKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNS 354

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 99.8 bits (249), Expect = 2e-22
 Identities = 57/438 (13%), Positives = 133/438 (30%), Gaps = 44/438 (10%)

Query: 50  LSPFVGNLNFLRSINLPNNSFRGKIPHEV-GNLFRLQNLTLTNNYFLGKILTDLSHCSNL 108
           ++    NL  L+++ + N     +I       L  L  L +            L    ++
Sbjct: 115 VTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDI 174

Query: 109 MKFEASNNKLEGEIPVKISNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGG 168
                  ++    + +    L  ++ L + + +L     + +        +     R   
Sbjct: 175 HHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSV 234

Query: 169 RIPSTISHVRNLISFNVAYNQFSGMIPPIYNISSLQYIFIHTNRFHGSVPLDNGVNLPNL 228
               + + +  L+ + +  ++         + +       + +       L   V    +
Sbjct: 235 LTDESFNELLKLLRYILELSEVE-----FDDCTLNGLGDFNPSESDVVSELGK-VETVTI 288

Query: 229 RYFSISGNNLTGSLQDSLSNATNLQGLEINRNLFSGKVSINFSRLQNLSRLNLGENNLGT 288
           R   I    L   L    S    ++ + +  +            L++L  L+L EN +  
Sbjct: 289 RRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVE 348

Query: 289 GTTNDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQISDTIPDV 348
               +        +   L+ L L  N    +                           ++
Sbjct: 349 EYLKNSACKGAWPS---LQTLVLSQNHLRSM-----------------------QKTGEI 382

Query: 349 IANLVNLNALGVESNQLAGTIPLAIGELKSIQILFLNENFLRGTIPSSLGNLTLLTQLIL 408
           +  L NL +L +  N     +P +    + ++ L L+   +R  + +       L  L +
Sbjct: 383 LLTLKNLTSLDISRNTF-HPMPDSCQWPEKMRFLNLSSTGIR-VVKT--CIPQTLEVLDV 438

Query: 409 EVNNLQGKIPPSNGNCQNLILLTTRKNKLSGIVPRQLLRIITLSVLLDLSDNLLSGHFPT 468
             NNL           Q L +    +NKL  +    L  ++    ++ +S N L      
Sbjct: 439 SNNNLD-SFSLFLPRLQELYI---SRNKLKTLPDASLFPVLL---VMKISRNQLKSVPDG 491

Query: 469 KVGNLKNLVSLDISSNMF 486
               L +L  + + +N +
Sbjct: 492 IFDRLTSLQKIWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 65.1 bits (159), Expect = 3e-11
 Identities = 42/232 (18%), Positives = 81/232 (34%), Gaps = 15/232 (6%)

Query: 36  VTGLDLRHQSVGGVLSPFVGNLNFLRSINLPNNSFRGKIPHEVGNLFRLQNLTLTNNYFL 95
           +  L +    +   LS     L  ++ I + N+           +L  L+ L L+ N  +
Sbjct: 288 IRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMV 347

Query: 96  GKILTD---LSHCSNLMKFEASNNKLE--GEIPVKISNLLMLQILNIAENHLKGQLPASI 150
            + L +        +L     S N L    +    +  L  L  L+I+ N     +P S 
Sbjct: 348 EEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSC 406

Query: 151 GNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVAYNQFSGMIPPIYNISSLQYIFIHT 210
                ++ +++    +   + + I     L   +V+ N           +  LQ ++I  
Sbjct: 407 QWPEKMRFLNLSSTGI-RVVKTCIPQ--TLEVLDVSNNNLD-SFSL--FLPRLQELYISR 460

Query: 211 NRFHGSVPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINRNLF 262
           N+      L +    P L    IS N L           T+LQ + ++ N +
Sbjct: 461 NKLKT---LPDASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 52.0 bits (125), Expect = 4e-07
 Identities = 28/104 (26%), Positives = 44/104 (42%), Gaps = 3/104 (2%)

Query: 455 LDLSDNLLSGHFPTKVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTISI 514
            D      +   P+  G    + SLD+S N  +      L  C +L+ L ++ +      
Sbjct: 10  CDGRSRSFT-SIPS--GLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIE 66

Query: 515 PSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLLFLNMSYNHF 558
                SL S+  LDLS N+LS     +   LS L +LN+  N +
Sbjct: 67  GDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPY 110

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  118 bits (297), Expect = 1e-28
 Identities = 58/438 (13%), Positives = 138/438 (31%), Gaps = 27/438 (6%)

Query: 126 ISNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNV 185
             N    +I  + ++ LK  L +   +   ++E+D+ GN L     + ++    L   N+
Sbjct: 6   KQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNL 65

Query: 186 AYNQFSGMIPPIYNISSLQYIFIHTNRFHGSVPLDNGVNLPNLRYFSISGNNLTGSLQDS 245
           + N        + ++S+L+ + ++ N     +        P++     + NN++     S
Sbjct: 66  SSNVLYE-TLDLESLSTLRTLDLNNNYVQ-ELL-----VGPSIETLHAANNNISRV---S 115

Query: 246 LSNATNLQGLEINRNLFSGKVSINFSRLQNLSRLNLGENNLGTGTTNDLDFITLLTNCTK 305
            S     + + +  N  +    ++      +  L+L  N + T     ++F  L  +   
Sbjct: 116 CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDT-----VNFAELAASSDT 170

Query: 306 LEVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQISDTIPDVIANLVNLNALGVESNQL 365
           LE L+L  N    V    +      +  + + SN+++  +     +   +  + + +N+L
Sbjct: 171 LEHLNLQYNFIYDVKGQVVF---AKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKL 226

Query: 366 AGTIPLAIGELKSIQILFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSNGNCQ 425
              I  A+   ++++   L  N                    +    ++     +   C 
Sbjct: 227 V-LIEKALRFSQNLEHFDLRGNGFHCGTLRDF-FSKNQRVQTVAKQTVKKLTGQNEEECT 284

Query: 426 NLILLTTRKNKLSGIVPRQLLRIITLSV----LLDLSDNLLSGHFPTKVGNLKNLVSLDI 481
              L          +      R+I L      LL    +        +  N      +D 
Sbjct: 285 VPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETER-LECERENQARQREIDA 343

Query: 482 SSNMFSGEIPTTLGGCTSLEYLGMQDNSFTISIPSTLSSLKSITELDLSRNNLSGHIPQY 541
               +   I        +   L  +  +    + +   +   +             +   
Sbjct: 344 LKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQ-IELQHA 402

Query: 542 LENLSFLLFLNMSYNHFE 559
            E  S L  L      +E
Sbjct: 403 TEEQSPLQLLRAIVKRYE 420

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  107 bits (268), Expect = 5e-25
 Identities = 63/488 (12%), Positives = 142/488 (29%), Gaps = 50/488 (10%)

Query: 74  IPHEVGNLFRLQNLTLTNNYFLGKILTDLSHCSNLMKFEASNNKLEGEIPVKISNLLMLQ 133
           I     N  R +   +T++     + +      N+ + + S N L       ++    L+
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 134 ILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVAYNQFSGM 193
           +LN++ N L       + +LS L+ +D+  N +       +    ++ + + A N  S  
Sbjct: 62  LLNLSSNVLYE--TLDLESLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNIS-- 112

Query: 194 IPPIYNISSLQYIFIHTNRFHGSVPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQ 253
                                  V    G    N+    ++ N +T          + +Q
Sbjct: 113 ----------------------RVSCSRGQGKKNIY---LANNKITMLRDLDEGCRSRVQ 147

Query: 254 GLEINRNLFSG-KVSINFSRLQNLSRLNLGENNLGTGTTNDLDFITLLTNCTKLEVLDLH 312
            L++  N       +   +    L  LNL  N +          +       KL+ LDL 
Sbjct: 148 YLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD--------VKGQVVFAKLKTLDLS 199

Query: 313 SNRFGGVLPFSLANLSTTMTEIAIGSNQISDTIPDVIANLVNLNALGVESNQLAGTIPLA 372
           SN+    +     +    +T I++ +N++   I   +    NL    +  N       L 
Sbjct: 200 SNKL-AFMGPEFQSA-AGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFH-CGTLR 255

Query: 373 IGELKSIQILFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSNGNCQNLILLTT 432
               K+ ++  + +  ++     +    T+ T         +    P       L     
Sbjct: 256 DFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEH 315

Query: 433 RKNKLSGIVPRQL-LRIITLSVL--LDLSDNLLSGHFPTKVGNLKNLVSLDISSNMFSGE 489
                 G    +L       +    +D                 +  ++L+        +
Sbjct: 316 ALLSGQGSETERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQ 375

Query: 490 IPTTLGGCTSLEYLGMQDNSFTISIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLL 549
           +         L+    Q         +T           + +     ++ Q     + + 
Sbjct: 376 VSNGRRAHAELDGTLQQAVGQIELQHATEEQSPLQLLRAIVKRYEEMYVEQQSVQNNAIR 435

Query: 550 FLNMSYNH 557
             +M  + 
Sbjct: 436 DWDMYQHK 443

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  104 bits (262), Expect = 3e-24
 Identities = 55/457 (12%), Positives = 133/457 (29%), Gaps = 30/457 (6%)

Query: 34  QRVTGLDLRHQSVGGVLSPFVGNLNFLRSINLPNNSFRGKIPHEVGNLFRLQNLTLTNNY 93
            R     +   S+   L+    +   ++ ++L  N        ++    +L+ L L++N 
Sbjct: 10  NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV 69

Query: 94  FLGKILTDLSHCSNLMKFEASNNKLEGEIPVKISNLLMLQILNIAENHLKGQLPASIGNL 153
                  DL   S L   + +NN ++     ++     ++ L+ A N++  ++  S    
Sbjct: 70  LYE--TLDLESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNIS-RVSCSR--G 119

Query: 154 SALQEIDVRGNRLGGRIPSTISHVRNLISFNVAYNQFSGMIPP--IYNISSLQYIFIHTN 211
              + I +  N++             +   ++  N+   +       +  +L+++ +  N
Sbjct: 120 QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN 179

Query: 212 RFHGSVPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINRNLFSGKVSINFS 271
             +    +   V    L+   +S N L   +     +A  +  + +  N     +     
Sbjct: 180 FIYD---VKGQVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALR 234

Query: 272 RLQNLSRLNLGENNLGTGTTNDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSTTM 331
             QNL   +L  N    GT  D       +   +++ +   + +    L        T  
Sbjct: 235 FSQNLEHFDLRGNGFHCGTLRD-----FFSKNQRVQTVAKQTVKK---LTGQNEEECTVP 286

Query: 332 TEIAIGSNQISDTIPDVIANLVNLNALGVESNQLAG----TIPLAIGELKSIQILFLNEN 387
           T    G+    D        L+ L           G     +          + +   + 
Sbjct: 287 TLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKE 346

Query: 388 FLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSNGNCQNLILLTTRKNKLSGIVPRQLLR 447
             R  I            L  +   L  ++         L     +      +       
Sbjct: 347 QYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIEL-QHATEE 405

Query: 448 IITLSVLLDLSDNLLSGHFPTKVGNLKNLVSLDISSN 484
              L +L  +       +   +      +   D+  +
Sbjct: 406 QSPLQLLRAIVKRYEEMYVEQQSVQNNAIRDWDMYQH 442

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =   99 bits (249), Expect = 2e-22
 Identities = 46/323 (14%), Positives = 111/323 (34%), Gaps = 30/323 (9%)

Query: 241 SLQDSLSNATNLQGLEINRNLFSGKVSINFSRLQNLSRLNLGENNLGTGTTNDLDFITLL 300
           ++ +   N    +  ++  +     ++       N+  L+L  N L   +         L
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAA------DL 54

Query: 301 TNCTKLEVLDLHSNRFGGVLPFS-LANLSTTMTEIAIGSNQISDTIPDVIANLVNLNALG 359
              TKLE+L+L SN     L    L+ L      + + +N + +     +    ++  L 
Sbjct: 55  APFTKLELLNLSSNVLYETLDLESLSTL----RTLDLNNNYVQE-----LLVGPSIETLH 105

Query: 360 VESNQLAGTIPLAIGELKSIQILFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPP 419
             +N ++  +  +    +  + ++L  N +        G  + +  L L++N +   +  
Sbjct: 106 AANNNIS-RVSCSR--GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEID-TVNF 161

Query: 420 SN--GNCQNLILLTTRKNKLSGIVPRQLLRIITLSVLLDLSDNLLSGHFPTKVGNLKNLV 477
           +    +   L  L  + N +  +  + +   +     LDLS N L+     +  +   + 
Sbjct: 162 AELAASSDTLEHLNLQYNFIYDVKGQVVFAKLK---TLDLSSNKLA-FMGPEFQSAAGVT 217

Query: 478 SLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSF-TISIPSTLSSLKSITELDLSRNNLSG 536
            + + +N     I   L    +LE+  ++ N F   ++    S  + +  +         
Sbjct: 218 WISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLT 276

Query: 537 HIPQYLENLSFLLFLNMSYNHFE 559
                 E  +     +      E
Sbjct: 277 GQN--EEECTVPTLGHYGAYCCE 297

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 45.6 bits (108), Expect = 3e-05
 Identities = 19/71 (26%), Positives = 28/71 (39%)

Query: 490 IPTTLGGCTSLEYLGMQDNSFTISIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLL 549
           I          +   + D+S   ++ S   S  ++ ELDLS N LS      L   + L 
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 550 FLNMSYNHFEG 560
            LN+S N    
Sbjct: 62  LLNLSSNVLYE 72

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  118 bits (297), Expect = 1e-28
 Identities = 64/333 (19%), Positives = 113/333 (33%), Gaps = 32/333 (9%)

Query: 226 PNLRYFSISGNNLTGSLQDSLSNATNLQGLEINRNLFSGKVSINFSRLQNLSRLNLGENN 285
              R   +  N +    QD  ++  +L+ LE+N N+ S      F+ L NL  L L  N 
Sbjct: 32  TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR 91

Query: 286 LGTGTTNDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQISDTI 345
           L            + T  + L  LD+  N+   +L +   +L   +  + +G N +    
Sbjct: 92  LKLIPLG------VFTGLSNLTKLDISENKIVILLDYMFQDL-YNLKSLEVGDNDLVYIS 144

Query: 346 PDVIANLVNLNALGVESNQLAGTIPLAIGELKSIQILFLNENFLRGTIPSSLGNLTLLTQ 405
               + L +L  L +E   L      A+  L  + +L L    +      S   L  L  
Sbjct: 145 HRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKV 204

Query: 406 LILEVNNLQGKIPPSNGNCQNLILLTTRKNKLSGIVPRQLLRIITLSVLLDLSDNLLSGH 465
           L +        + P+     NL  L+     L+ + P   +R                  
Sbjct: 205 LEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAV-PYLAVR------------------ 245

Query: 466 FPTKVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTISIPSTLSSLKSIT 525
                 +L  L  L++S N  S    + L     L+ + +      +  P     L  + 
Sbjct: 246 ------HLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLR 299

Query: 526 ELDLSRNNLSGHIPQYLENLSFLLFLNMSYNHF 558
            L++S N L+        ++  L  L +  N  
Sbjct: 300 VLNVSGNQLTTLEESVFHSVGNLETLILDSNPL 332

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  108 bits (272), Expect = 2e-25
 Identities = 61/335 (18%), Positives = 117/335 (34%), Gaps = 33/335 (9%)

Query: 201 SSLQYIFIHTNRFHGSVPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINRN 260
           +  + + +  NR   ++  D   + P+L    ++ N ++     + +N  NL+ L +  N
Sbjct: 32  TETRLLDLGKNRIK-TLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN 90

Query: 261 LFSGKVSINFSRLQNLSRLNLGENNLGTGTTNDLDFITLLTNCTKLEVLDLHSNRFGGVL 320
                          L  + LG                + T  + L  LD+  N+   +L
Sbjct: 91  --------------RLKLIPLG----------------VFTGLSNLTKLDISENKIVILL 120

Query: 321 PFSLANLSTTMTEIAIGSNQISDTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSIQ 380
            +   +L   +  + +G N +        + L +L  L +E   L      A+  L  + 
Sbjct: 121 DYMFQDL-YNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLI 179

Query: 381 ILFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSNGNCQNLILLTTRKNKLSGI 440
           +L L    +      S   L  L  L +        + P+     NL  L+     L+ +
Sbjct: 180 VLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAV 239

Query: 441 VPRQLLRIITLSVLLDLSDNLLSGHFPTKVGNLKNLVSLDISSNMFSGEIPTTLGGCTSL 500
               +  ++ L   L+LS N +S    + +  L  L  + +     +   P    G   L
Sbjct: 240 PYLAVRHLVYLRF-LNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYL 298

Query: 501 EYLGMQDNSFTISIPSTLSSLKSITELDLSRNNLS 535
             L +  N  T    S   S+ ++  L L  N L+
Sbjct: 299 RVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 97.5 bits (243), Expect = 9e-22
 Identities = 68/333 (20%), Positives = 124/333 (37%), Gaps = 35/333 (10%)

Query: 60  LRSINLPNNSFRGKIPHEVGNLFRLQNLTLTNNYFLGKILTD-LSHCSNLMKFEASNNKL 118
            R ++L  N  +     E  +   L+ L L  N  +  +     ++  NL      +N+L
Sbjct: 34  TRLLDLGKNRIKTLNQDEFASFPHLEELELNENI-VSAVEPGAFNNLFNLRTLGLRSNRL 92

Query: 119 EGEIPVKI-SNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHV 177
           +  IP+ + + L  L  L+I+EN +   L     +L  L+ ++V  N L           
Sbjct: 93  K-LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLV---------- 141

Query: 178 RNLISFNVAYNQFSGMIPPIYNISSLQYIFIHTNRFHGSVPLDNGVNLPNLRYFSISGNN 237
                  +++  FSG+       +SL+ + +       S+P +   +L  L    +   N
Sbjct: 142 ------YISHRAFSGL-------NSLEQLTLEKCNLT-SIPTEALSHLHGLIVLRLRHLN 187

Query: 238 LTGSLQDSLSNATNLQGLEINRNLFSGKVSINFSRLQNLSRLNLGENNLGTGTTNDLDFI 297
           +      S      L+ LEI+   +   ++ N     NL+ L++   NL           
Sbjct: 188 INAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYL----- 242

Query: 298 TLLTNCTKLEVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQISDTIPDVIANLVNLNA 357
             + +   L  L+L  N    +    L  L   + EI +   Q++   P     L  L  
Sbjct: 243 -AVRHLVYLRFLNLSYNPISTIEGSMLHEL-LRLQEIQLVGGQLAVVEPYAFRGLNYLRV 300

Query: 358 LGVESNQLAGTIPLAIGELKSIQILFLNENFLR 390
           L V  NQL          + +++ L L+ N L 
Sbjct: 301 LNVSGNQLTTLEESVFHSVGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 93.2 bits (232), Expect = 2e-20
 Identities = 52/238 (21%), Positives = 95/238 (39%), Gaps = 7/238 (2%)

Query: 325 ANLSTTMTEIAIGSNQISDTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSIQILFL 384
             + T    + +G N+I     D  A+  +L  L +  N ++   P A   L +++ L L
Sbjct: 28  EGIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGL 87

Query: 385 NENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSN-GNCQNLILLTTRKNKLSGIVPR 443
             N L+         L+ LT+L +  N +   +      +  NL  L    N L  I  R
Sbjct: 88  RSNRLKLIPLGVFTGLSNLTKLDISENKIV-ILLDYMFQDLYNLKSLEVGDNDLVYISHR 146

Query: 444 QLLRIITLSVLLDLSDNLLSGHFPTKV-GNLKNLVSLDISSNMFSGEIPTTLGGCTSLEY 502
               + +L   L L    L+   PT+   +L  L+ L +     +     +      L+ 
Sbjct: 147 AFSGLNSLEQ-LTLEKCNLT-SIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKV 204

Query: 503 LGMQDNSFTISIPSTLSSLKSITELDLSRNNLSGHIPQY-LENLSFLLFLNMSYNHFE 559
           L +    +  ++        ++T L ++  NL+  +P   + +L +L FLN+SYN   
Sbjct: 205 LEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT-AVPYLAVRHLVYLRFLNLSYNPIS 261

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 73.6 bits (181), Expect = 5e-14
 Identities = 41/235 (17%), Positives = 90/235 (38%), Gaps = 8/235 (3%)

Query: 56  NLNFLRSINLPNNSFRGKIPHEVGNLFRLQNLTLTNNYFLGKILTD-LSHCSNLMKFEAS 114
            L+ L  +++  N     + +   +L+ L++L + +N  L  I     S  ++L +    
Sbjct: 102 GLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDN-DLVYISHRAFSGLNSLEQLTLE 160

Query: 115 NNKLEGEIPVKI-SNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPST 173
              L   IP +  S+L  L +L +   ++      S   L  L+ +++        +   
Sbjct: 161 KCNLT-SIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPN 219

Query: 174 ISHVRNLISFNVAYNQFSGMIPP--IYNISSLQYIFIHTNRFHGSVPLDNGVNLPNLRYF 231
             +  NL S ++ +   +  +P   + ++  L+++ +  N    ++       L  L+  
Sbjct: 220 CLYGLNLTSLSITHCNLT-AVPYLAVRHLVYLRFLNLSYNPIS-TIEGSMLHELLRLQEI 277

Query: 232 SISGNNLTGSLQDSLSNATNLQGLEINRNLFSGKVSINFSRLQNLSRLNLGENNL 286
            + G  L      +      L+ L ++ N  +      F  + NL  L L  N L
Sbjct: 278 QLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPL 332

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 68.2 bits (167), Expect = 3e-12
 Identities = 46/194 (23%), Positives = 69/194 (35%), Gaps = 31/194 (15%)

Query: 368 TIPLAIGELKSIQILFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSNGNCQNL 427
            +P  I      ++L L +N ++        +   L +L L  N +   + P  G   NL
Sbjct: 25  AVPEGI--PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVS-AVEP--GAFNNL 79

Query: 428 ILLTTRKNKLSGIVPRQLLRIITLSVLLDLSDNLLSGHFPTKV-GNLKNLVSLDISSNMF 486
             L T                      L L  N L    P  V   L NL  LDIS N  
Sbjct: 80  FNLRT----------------------LGLRSNRLK-LIPLGVFTGLSNLTKLDISENKI 116

Query: 487 SGEIPTTLGGCTSLEYLGMQDNSFTISIPSTLSSLKSITELDLSRNNLSGHIPQY-LENL 545
              +        +L+ L + DN          S L S+ +L L + NL+  IP   L +L
Sbjct: 117 VILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLT-SIPTEALSHL 175

Query: 546 SFLLFLNMSYNHFE 559
             L+ L + + +  
Sbjct: 176 HGLIVLRLRHLNIN 189

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  115 bits (289), Expect = 9e-28
 Identities = 86/508 (16%), Positives = 163/508 (32%), Gaps = 82/508 (16%)

Query: 50  LSPFVGNLNFLRSINLPNNSFRGKIPHEVGNLFRLQNLTLTNNYFLGKILTDLSHCSNLM 109
           +     N+          + +    P   G    +    L +                  
Sbjct: 26  MPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDC-----------LDRQAH 74

Query: 110 KFEASNNKLEGEIPVKISNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGR 169
           + E +N  L   +P    +L   + L  + N L  +LP    +L +L   +     L   
Sbjct: 75  ELELNNLGLS-SLPELPPHL---ESLVASCNSLT-ELPELPQSLKSLLVDNNNLKALSDL 129

Query: 170 IPSTISHVRNLISFNVAYNQFSGMIPPIYNISSLQYIFIHTNRFHGSVPLDNGVNLPNLR 229
            P        L    V+ NQ    +P + N S L+ I +  N     +P       P+L 
Sbjct: 130 PP-------LLEYLGVSNNQLEK-LPELQNSSFLKIIDVDNNSLK-KLP----DLPPSLE 176

Query: 230 YFSISGNNLTGSLQDSLSNATNLQGLEINRNLFSGKVSINFSRLQNLSRLNLGENNLGTG 289
           + +   N L   L   L N   L  +  + N     +        +L  +  G N L   
Sbjct: 177 FIAAGNNQLE-EL-PELQNLPFLTAIYADNN----SLKKLPDLPLSLESIVAGNNILEE- 229

Query: 290 TTNDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQISDTIPDVI 349
                  +  L N   L  +   +N     LP    +L      + +  N ++  +P++ 
Sbjct: 230 -------LPELQNLPFLTTIYADNNLLK-TLPDLPPSL----EALNVRDNYLT-DLPELP 276

Query: 350 ANLVNLNALGVESNQLAGTIPLAIGELKSIQILFLNENFLRGTIPSSLGNLTLLTQLILE 409
            +L  L+      + L+   P       ++  L  + N +R ++     +L    +L + 
Sbjct: 277 QSLTFLDVSENIFSGLSELPP-------NLYYLNASSNEIR-SLCDLPPSLE---ELNVS 325

Query: 410 VNNLQGKIPPSNGNCQNLILLTTRKNKLSGIVPRQLLRIITLSVLLDLSDNLLSGHFPTK 469
            N L  ++P      + LI      N L+ + P     +  L     +  N L   FP  
Sbjct: 326 NNKLI-ELPALPPRLERLIA---SFNHLAEV-PELPQNLKQL----HVEYNPLR-EFPDI 375

Query: 470 VGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTISIPSTLSSLKSITELDL 529
             ++++L       N    E+P       +L+ L ++ N      P    S+    +L +
Sbjct: 376 PESVEDL-----RMNSHLAEVPELPQ---NLKQLHVETNPLR-EFPDIPESV---EDLRM 423

Query: 530 SRNNLSGHIPQYLENLSFLLFLNMSYNH 557
           +   +        E    L      ++H
Sbjct: 424 NSERVVDPYEFAHETTDKLEDDVFEHHH 451

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  105 bits (265), Expect = 1e-24
 Identities = 85/469 (18%), Positives = 150/469 (31%), Gaps = 92/469 (19%)

Query: 114 SNNKLEGEIPVKISNLLMLQILNIAENHLKGQLPASIGNLSA-------------LQEID 160
            ++ L  E+PV+  N+        A +  +   P   G                   E++
Sbjct: 19  HSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELE 77

Query: 161 VRGNRLGGRIPSTISHVRNLISFNVAYNQFSGMIPPIYNISSLQYIFIHTNRFHGSVPLD 220
           +    L   +P    H+ +L     + N  + +     ++ SL     +           
Sbjct: 78  LNNLGL-SSLPELPPHLESL---VASCNSLTELPELPQSLKSLLVDNNNLKALSD----- 128

Query: 221 NGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINRNLFSGKVSINFSRLQNLSRLN 280
                P L Y  +S N L       L N++ L+ ++++ N     +        +L  + 
Sbjct: 129 ---LPPLLEYLGVSNNQLEKL--PELQNSSFLKIIDVDNN----SLKKLPDLPPSLEFIA 179

Query: 281 LGENNLGTGTTNDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQ 340
            G N L          +  L N   L  +   +N     LP    +L      I  G+N 
Sbjct: 180 AGNNQLEE--------LPELQNLPFLTAIYADNNSL-KKLPDLPLSL----ESIVAGNNI 226

Query: 341 ISDTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSIQILFLNENFLRGTIPSSLGNL 400
           +       + NL  L  +  ++N L  T+P     L++   L + +N+L   +P    +L
Sbjct: 227 L--EELPELQNLPFLTTIYADNNLLK-TLPDLPPSLEA---LNVRDNYLT-DLPELPQSL 279

Query: 401 TLLTQLILEVNNLQGKIPPSNGNCQNLILLTTRKNKLSGIVPRQLLRIITLSVLLDLSDN 460
           T L       + L    P       NL  L    N++  +       +      L++S+N
Sbjct: 280 TFLDVSENIFSGLSELPP-------NLYYLNASSNEIRSL-CDLPPSLEE----LNVSNN 327

Query: 461 LLSGHFPTKVGNLK-----------------NLVSLDISSNMFSGEIPTTLGGCTSLEYL 503
            L    P     L+                 NL  L +  N    E P        L   
Sbjct: 328 KLI-ELPALPPRLERLIASFNHLAEVPELPQNLKQLHVEYNPLR-EFPDIPESVEDLRM- 384

Query: 504 GMQDNSFTISIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLLFLN 552
               NS    +P    +LK   +L +  N L    P   E++  L   +
Sbjct: 385 ----NSHLAEVPELPQNLK---QLHVETNPLR-EFPDIPESVEDLRMNS 425

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 86.6 bits (215), Expect = 3e-18
 Identities = 70/362 (19%), Positives = 131/362 (36%), Gaps = 56/362 (15%)

Query: 52  PFVGNLNFLRSINLPNNSFRGKIPHEVGNLFRLQNLTLTNNYFLGKILTDLSHCSNLMKF 111
           P + N +FL+ I++ NNS + K+P    +L   + +   NN    + L +L +   L   
Sbjct: 147 PELQNSSFLKIIDVDNNSLK-KLPDLPPSL---EFIAAGNNQL--EELPELQNLPFLTAI 200

Query: 112 EASNNKLEGEIPVKISNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIP 171
            A NN L+ ++P    +L   + +    N L+      + NL  L  I    N L   +P
Sbjct: 201 YADNNSLK-KLPDLPLSL---ESIVAGNNILE--ELPELQNLPFLTTIYADNNLLK-TLP 253

Query: 172 STISHVRNLISFNVAYNQFSGMIPPIYNISSLQYIFIHTNRFHGSVPLDNGVNLPNLRYF 231
                  +L + NV  N  + +     +++ L       +              PNL Y 
Sbjct: 254 DLPP---SLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSEL--------PPNLYYL 302

Query: 232 SISGNNLTGSLQDSLSNATNLQGLEINRNLFSGKVSINFSRLQNLSRLNLGENNLGTGTT 291
           + S N +  SL D      +L+ L ++ N       +  +    L RL    N+L     
Sbjct: 303 NASSNEIR-SLCDLP---PSLEELNVSNNKLI---EL-PALPPRLERLIASFNHLAE--- 351

Query: 292 NDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQISDTIPDVIAN 351
                  +      L+ L +  N      P    ++          ++ ++  +P++  N
Sbjct: 352 -------VPELPQNLKQLHVEYNPLR-EFPDIPESVEDLRM-----NSHLA-EVPELPQN 397

Query: 352 LVNLNALGVESNQLAGTIPLAIGELKSIQILFLNENFLRGTIPSSLGNLTLLTQLILEVN 411
           L  L+   VE+N L    P     ++    L +N   +      +      L   + E +
Sbjct: 398 LKQLH---VETNPLR-EFPDIPESVED---LRMNSERVVDPYEFAHETTDKLEDDVFEHH 450

Query: 412 NL 413
           + 
Sbjct: 451 HH 452

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 78.5 bits (194), Expect = 1e-15
 Identities = 45/243 (18%), Positives = 90/243 (37%), Gaps = 37/243 (15%)

Query: 329 TTMTEIAIGSNQISDTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSIQILFLNENF 388
           T + E    S+ ++  +P    N+ +        ++     P   GE + + +  L +  
Sbjct: 11  TFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCL 69

Query: 389 LRG------------TIPSSLGNLTLLTQLILEVNNLQGKIPPSNGNCQNLILLTTRKNK 436
            R             ++P    +   L  L+   N+L  ++P    + ++L++       
Sbjct: 70  DRQAHELELNNLGLSSLPELPPH---LESLVASCNSLT-ELPELPQSLKSLLVDNNNLKA 125

Query: 437 LSGIVPRQLLRIITLSVLLDLSDNLLSGHFPTKVGNLKNLVSLDISSNMFSGEIPTTLGG 496
           LS + P  L         L +S+N L    P  + N   L  +D+ +N    ++P     
Sbjct: 126 LSDL-PPLL-------EYLGVSNNQLE-KLPE-LQNSSFLKIIDVDNNSLK-KLPDLPP- 173

Query: 497 CTSLEYLGMQDNSFTISIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLLFLNMSYN 556
             SLE++   +N     +P  L +L  +T +    N+L   +P    +L     +    N
Sbjct: 174 --SLEFIAAGNNQLE-ELPE-LQNLPFLTAIYADNNSLK-KLPDLPLSLE---SIVAGNN 225

Query: 557 HFE 559
             E
Sbjct: 226 ILE 228

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 67.3 bits (165), Expect = 4e-12
 Identities = 39/191 (20%), Positives = 71/191 (37%), Gaps = 27/191 (14%)

Query: 369 IPLAIGELKSIQILFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSNGNCQNLI 428
           I         +Q    + + L   +P    N+   T+     +  +   PP NG  + + 
Sbjct: 3   INPRNVSNTFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMA 61

Query: 429 LLTTRKNKLSGIVPRQLLRIITLSVLLDLSDNLLSGHFPTKVGNLKNLVSLDISSNMFSG 488
           +     ++L   + RQ          L+L++  LS   P    +L+   SL  S N  + 
Sbjct: 62  V-----SRLRDCLDRQAHE-------LELNNLGLS-SLPELPPHLE---SLVASCNSLT- 104

Query: 489 EIPTTLGGCTSLEYLGMQDNSFTISIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFL 548
           E+P       SL        + +   P        +  L +S N L   +P+ L+N SFL
Sbjct: 105 ELPELPQSLKSLLVDNNNLKALSDLPP-------LLEYLGVSNNQLE-KLPE-LQNSSFL 155

Query: 549 LFLNMSYNHFE 559
             +++  N  +
Sbjct: 156 KIIDVDNNSLK 166

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 45.4 bits (108), Expect = 4e-05
 Identities = 37/214 (17%), Positives = 71/214 (33%), Gaps = 32/214 (14%)

Query: 50  LSPFVGNLNFLRSINLPNNSFRGKIPHEVGNLFRLQNLTLTNNYFLGKILTDLSHCSNLM 109
           L     +L FL       +      P+       L  L  ++N    +I +      +L 
Sbjct: 272 LPELPQSLTFLDVSENIFSGLSELPPN-------LYYLNASSN----EIRSLCDLPPSLE 320

Query: 110 KFEASNNKLEGEIPVKISNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGR 169
           +   SNNKL  E+P     L   + L  + NHL  ++P    NL   +++ V  N L   
Sbjct: 321 ELNVSNNKLI-ELPALPPRL---ERLIASFNHLA-EVPELPQNL---KQLHVEYNPLR-E 371

Query: 170 IPSTISHVRNLISFNVAYNQFSGMIPPIYNISSLQYIFIHTNRFHGSVPLDNGVNLPNLR 229
            P     V +L   +         +P +    +L+ + + TN      P        ++ 
Sbjct: 372 FPDIPESVEDLRMNS-----HLAEVPEL--PQNLKQLHVETNPLR-EFP----DIPESVE 419

Query: 230 YFSISGNNLTGSLQDSLSNATNLQGLEINRNLFS 263
              ++   +    + +      L+      +   
Sbjct: 420 DLRMNSERVVDPYEFAHETTDKLEDDVFEHHHHH 453

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  112 bits (283), Expect = 3e-27
 Identities = 56/338 (16%), Positives = 117/338 (34%), Gaps = 28/338 (8%)

Query: 223 VNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINRNLFSGKVSINFSRLQNLSRLNLG 282
           + L N +  +   + +       L +   ++ L +N        +  F+    + +L +G
Sbjct: 42  ITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMG 101

Query: 283 ENNLGTGTTNDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQIS 342
            N +     +      +  N   L VL L  N    +      N    +T +++ +N + 
Sbjct: 102 FNAIRYLPPH------VFQNVPLLTVLVLERNDLSSLPRGIFHNT-PKLTTLSMSNNNLE 154

Query: 343 DTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSIQILFLNENFLRGTIPSSLGNLTL 402
               D      +L  L + SN+L     + +  + S+    ++ N L     S+L     
Sbjct: 155 RIEDDTFQATTSLQNLQLSSNRLTH---VDLSLIPSLFHANVSYNLL-----STLAIPIA 206

Query: 403 LTQLILEVNNLQGKIPPSNGNCQNLILLTTRKNKLSGI-VPRQLLRIITLSVLLDLSDNL 461
           + +L    N++   +         L +L  + N L+          ++     +DLS N 
Sbjct: 207 VEELDASHNSIN-VVRG--PVNVELTILKLQHNNLTDTAWLLNYPGLVE----VDLSYNE 259

Query: 462 LSGHFPTKVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTISIPSTLSSL 521
           L          ++ L  L IS+N     +        +L+ L +  N     +       
Sbjct: 260 LEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQF 317

Query: 522 KSITELDLSRNNLSGHIPQYLENLSFLLFLNMSYNHFE 559
             +  L L  N++   +   L     L  L +S+N ++
Sbjct: 318 DRLENLYLDHNSIV-TLK--LSTHHTLKNLTLSHNDWD 352

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  106 bits (266), Expect = 4e-25
 Identities = 63/399 (15%), Positives = 131/399 (32%), Gaps = 52/399 (13%)

Query: 66  PNNSFRGKIPHEVGNLFRLQNLTLTNNYFLGKILTDLSHCSNLMKFEASNNKLEGEIPVK 125
           P       I   +       ++ +           +    +N       N+ +  ++P  
Sbjct: 5   PRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAA 63

Query: 126 I-SNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFN 184
           +  +   +++LN+ +  ++     +      +Q++ +  N +    P    +V  L    
Sbjct: 64  LLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 123

Query: 185 VAYNQFSGMIPPIYNISSLQYIFIHTNRFHGSVPLDNGVNLPNLRYFSISGNNLTGSLQD 244
           +  N  S                        S+P     N P L   S+S NNL     D
Sbjct: 124 LERNDLS------------------------SLPRGIFHNTPKLTTLSMSNNNLERIEDD 159

Query: 245 SLSNATNLQGLEINRNLFSGKVSINFSRLQNLSRLNLGENNLGTGTTNDLDFITLLTNCT 304
           +    T+LQ L+++ N  +    ++ S + +L   N+  N            ++ L    
Sbjct: 160 TFQATTSLQNLQLSSNRLT---HVDLSLIPSLFHANVSYNL-----------LSTLAIPI 205

Query: 305 KLEVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQISDTIPDVIANLVNLNALGVESNQ 364
            +E LD   N    V       L    T + +  N ++D     + N   L  + +  N+
Sbjct: 206 AVEELDASHNSINVVRGPVNVEL----TILKLQHNNLTD--TAWLLNYPGLVEVDLSYNE 259

Query: 365 LAGTIPLAIGELKSIQILFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSNGNC 424
           L   +     +++ ++ L+++ N L   +      +  L  L L  N+L   +  +    
Sbjct: 260 LEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQF 317

Query: 425 QNLILLTTRKNKLSGIVPRQLLRIITLSVLLDLSDNLLS 463
             L  L    N +  +       +      L LS N   
Sbjct: 318 DRLENLYLDHNSIVTLKLSTHHTLKN----LTLSHNDWD 352

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  105 bits (264), Expect = 1e-24
 Identities = 61/362 (16%), Positives = 126/362 (34%), Gaps = 31/362 (8%)

Query: 56  NLNFLRSINLPNNSFRGKIPHEVGNLFRLQNLTLTNNYFLGKILTDLSHCSNLMKFEASN 115
                  +++   +       E   L   + +T  N+         L     +     ++
Sbjct: 19  YDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLND 78

Query: 116 NKLEGEIPVKI-SNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTI 174
            ++E EI     +    +Q L +  N ++   P    N+  L  + +  N L        
Sbjct: 79  LQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIF 137

Query: 175 SHVRNLISFNVAYNQFSGMIPP--IYNISSLQYIFIHTNRFHGSVPLDNGVNLPNLRYFS 232
            +   L + +++ N     I        +SLQ + + +NR    V L     +P+L + +
Sbjct: 138 HNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLT-HVDLS---LIPSLFHAN 192

Query: 233 ISGNNLTGSLQDSLSNATNLQGLEINRNLFSGKVSINFSRLQNLSRLNLGENNLGTGTTN 292
           +S N L+     +L+    ++ L+ + N  +    +       L+ L L  NNL      
Sbjct: 193 VSYNLLS-----TLAIPIAVEELDASHNSIN---VVRGPVNVELTILKLQHNNLTD---- 240

Query: 293 DLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQISDTIPDVIANL 352
                  L N   L  +DL  N    ++      +   +  + I +N++   +      +
Sbjct: 241 ----TAWLLNYPGLVEVDLSYNELEKIMYHPFVKM-QRLERLYISNNRLVA-LNLYGQPI 294

Query: 353 VNLNALGVESNQLAGTIPLAIGELKSIQILFLNENFLRGTIPSSLGNLTLLTQLILEVNN 412
             L  L +  N L   +     +   ++ L+L+ N +  T+   L     L  L L  N+
Sbjct: 295 PTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV-TLK--LSTHHTLKNLTLSHND 350

Query: 413 LQ 414
             
Sbjct: 351 WD 352

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 89.3 bits (222), Expect = 2e-19
 Identities = 49/293 (16%), Positives = 100/293 (34%), Gaps = 19/293 (6%)

Query: 267 SINFSRLQNLSRLNLGENNLGTGTTNDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLAN 326
            I+ +   +    ++  +          + ITL       +++   ++    +    L +
Sbjct: 12  CIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITL----NNQKIVTFKNSTMRKLPAALLDS 67

Query: 327 LSTTMTEIAIGSNQISDTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSIQILFLNE 386
               +  + +   QI +      A    +  L +  N +    P     +  + +L L  
Sbjct: 68  F-RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLER 126

Query: 387 NFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSNGNCQNLILLTTRKNKLSGIVPRQLL 446
           N L         N   LT L +  NNL+     +     +L  L    N+L+ +    + 
Sbjct: 127 NDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIP 186

Query: 447 RIITLSVLLDLSDNLLSGHFPTKVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQ 506
            +       ++S NLL     + +     +  LD S N  +  +         L  L +Q
Sbjct: 187 SLFHA----NVSYNLL-----STLAIPIAVEELDASHNSIN-VVRG--PVNVELTILKLQ 234

Query: 507 DNSFTISIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLLFLNMSYNHFE 559
            N+  ++  + L +   + E+DLS N L   +      +  L  L +S N   
Sbjct: 235 HNN--LTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV 285

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  106 bits (267), Expect = 1e-25
 Identities = 45/315 (14%), Positives = 108/315 (34%), Gaps = 26/315 (8%)

Query: 241 SLQDSLSNATNLQGLEINRNLFSGKVSINFSRLQNLSRLNLGENNLGTGTTNDLDFITLL 300
           ++ +   N    +  ++  +     ++       N+  L+L  N L   +         L
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAA------DL 54

Query: 301 TNCTKLEVLDLHSNRFGGVLPFS-LANLSTTMTEIAIGSNQISDTIPDVIANLVNLNALG 359
              TKLE+L+L SN     L    L+ L      + + +N + +     +    ++  L 
Sbjct: 55  APFTKLELLNLSSNVLYETLDLESLSTL----RTLDLNNNYVQE-----LLVGPSIETLH 105

Query: 360 VESNQLAGTIPLAIGELKSIQILFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQG-KIP 418
             +N ++  +  +    +  + ++L  N +        G  + +  L L++N +      
Sbjct: 106 AANNNIS-RVSCSR--GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFA 162

Query: 419 PSNGNCQNLILLTTRKNKLSGIVPRQLLRIITLSVLLDLSDNLLSGHFPTKVGNLKNLVS 478
               +   L  L  + N +  +  + +   +     LDLS N L+     +  +   +  
Sbjct: 163 ELAASSDTLEHLNLQYNFIYDVKGQVVFAKLK---TLDLSSNKLA-FMGPEFQSAAGVTW 218

Query: 479 LDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFT-ISIPSTLSSLKSITELDLSRNNLSGH 537
           + + +N     I   L    +LE+  ++ N F   ++    S  + +  +          
Sbjct: 219 ISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTG 277

Query: 538 IPQYLENLSFLLFLN 552
             +    +  L    
Sbjct: 278 QNEEECTVPTLGHYG 292

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  103 bits (258), Expect = 2e-24
 Identities = 46/327 (14%), Positives = 113/327 (34%), Gaps = 21/327 (6%)

Query: 126 ISNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNV 185
             N    +I  + ++ LK  L +   +   ++E+D+ GN L     + ++    L   N+
Sbjct: 6   KQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNL 65

Query: 186 AYNQFSGMIPPIYNISSLQYIFIHTNRFHGSVPLDNGVNLPNLRYFSISGNNLTGSLQDS 245
           + N        + ++S+L+ + ++ N     +        P++     + NN++     S
Sbjct: 66  SSNVLY-ETLDLESLSTLRTLDLNNNYVQ-ELL-----VGPSIETLHAANNNISRV---S 115

Query: 246 LSNATNLQGLEINRNLFSGKVSINFSRLQNLSRLNLGENNLGTGTTNDLDFITLLTNCTK 305
            S     + + +  N  +    ++      +  L+L  N +     + ++F  L  +   
Sbjct: 116 CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEI-----DTVNFAELAASSDT 170

Query: 306 LEVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQISDTIPDVIANLVNLNALGVESNQL 365
           LE L+L  N    V           +  + + SN+++  +     +   +  + + +N+L
Sbjct: 171 LEHLNLQYNFIYDVKG--QVVF-AKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKL 226

Query: 366 AGTIPLAIGELKSIQILFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSNGNCQ 425
              I  A+   ++++   L  N                    +    ++     +   C 
Sbjct: 227 V-LIEKALRFSQNLEHFDLRGNGFH-CGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECT 284

Query: 426 NLILLTTRKNKLSGIVPRQLLRIITLS 452
              L          +      R+I L 
Sbjct: 285 VPTLGHYGAYCCEDLPAPFADRLIALG 311

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  100 bits (251), Expect = 1e-23
 Identities = 47/262 (17%), Positives = 91/262 (34%), Gaps = 17/262 (6%)

Query: 299 LLTNCTKLEVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQISDTIPDVIANLVNLNAL 358
           +  N  + ++  +  +     L     +    + E+ +  N +S      +A    L  L
Sbjct: 5   IKQNGNRYKIEKVTDSSLKQALASLRQSA-WNVKELDLSGNPLSQISAADLAPFTKLELL 63

Query: 359 GVESNQLAGTIPLAIGELKSIQILFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIP 418
            + SN L     L +  L +++ L LN N++       L     +  L    NN+  ++ 
Sbjct: 64  NLSSNVL--YETLDLESLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNIS-RVS 115

Query: 419 PSNGNCQNLILLTTRKNKLSGIVPRQLLRIITLSVLLDLSDNLLSG-HFPTKVGNLKNLV 477
            S G  Q    +    NK++ +          +  L DL  N +   +F     +   L 
Sbjct: 116 CSRG--QGKKNIYLANNKITMLRDLDEGCRSRVQYL-DLKLNEIDTVNFAELAASSDTLE 172

Query: 478 SLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTISIPSTLSSLKSITELDLSRNNLSGH 537
            L++  N    ++   +     L+ L +  N     +     S   +T + L  N L   
Sbjct: 173 HLNLQYNFIY-DVKGQVV-FAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-L 228

Query: 538 IPQYLENLSFLLFLNMSYNHFE 559
           I + L     L   ++  N F 
Sbjct: 229 IEKALRFSQNLEHFDLRGNGFH 250

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 92.4 bits (230), Expect = 1e-20
 Identities = 53/349 (15%), Positives = 116/349 (33%), Gaps = 49/349 (14%)

Query: 74  IPHEVGNLFRLQNLTLTNNYFLGKILTDLSHCSNLMKFEASNNKLEGEIPVKISNLLMLQ 133
           I     N  R +   +T++     + +      N+ + + S N L       ++    L+
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 134 ILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVAYNQFSGM 193
           +LN++ N L       + +LS L+ +D+  N +       +    ++ + + A N  S  
Sbjct: 62  LLNLSSNVLYE--TLDLESLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNIS-- 112

Query: 194 IPPIYNISSLQYIFIHTNRFHGSVPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQ 253
                                  V    G    N+    ++ N +T          + +Q
Sbjct: 113 ----------------------RVSCSRGQGKKNI---YLANNKITMLRDLDEGCRSRVQ 147

Query: 254 GLEINRN-LFSGKVSINFSRLQNLSRLNLGENNLGTGTTNDLDFITLLTNCTKLEVLDLH 312
            L++  N + +   +   +    L  LNL  N +          +       KL+ LDL 
Sbjct: 148 YLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD--------VKGQVVFAKLKTLDLS 199

Query: 313 SNRFGGVLPFSLANLSTTMTEIAIGSNQISDTIPDVIANLVNLNALGVESNQLAGTIPLA 372
           SN+    +     +    +T I++ +N++   I   +    NL    +  N       L 
Sbjct: 200 SNKL-AFMGPEFQSA-AGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFH-CGTLR 255

Query: 373 IGELKSIQILFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSN 421
               K+ ++  + +  ++     +    T+ T           +  P+ 
Sbjct: 256 DFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTL--GHYGAYCCEDLPAP 302

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 88.9 bits (221), Expect = 1e-19
 Identities = 36/231 (15%), Positives = 74/231 (32%), Gaps = 21/231 (9%)

Query: 345 IPDVIANLVNLNALGVESNQLAGTIPLAIGELKSIQILFLNENFLRGTIPSSLGNLTLLT 404
           I ++  N        V  + L   +        +++ L L+ N L     + L   T L 
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 405 QLILEVNNLQGKIPPSNGNCQNLILLTTRKNKLSGIVPRQLLRIITLS------------ 452
            L L  N L         +   L  L    N +  ++    +  +  +            
Sbjct: 62  LLNLSSNVLYE--TLDLESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSRG 119

Query: 453 ---VLLDLSDNLLSGHFPTKVGNLKNLVSLDISSNMFSG-EIPTTLGGCTSLEYLGMQDN 508
                + L++N ++       G    +  LD+  N               +LE+L +Q N
Sbjct: 120 QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN 179

Query: 509 SFTISIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLLFLNMSYNHFE 559
                +         +  LDLS N L+  +    ++ + + ++++  N   
Sbjct: 180 FIY-DVKG-QVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV 227

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 87.4 bits (217), Expect = 4e-19
 Identities = 39/296 (13%), Positives = 100/296 (33%), Gaps = 22/296 (7%)

Query: 34  QRVTGLDLRHQSVGGVLSPFVGNLNFLRSINLPNNSFRGKIPHEVGNLFRLQNLTLTNNY 93
            R     +   S+   L+    +   ++ ++L  N        ++    +L+ L L++N 
Sbjct: 10  NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV 69

Query: 94  FLGKILTDLSHCSNLMKFEASNNKLEGEIPVKISNLLMLQILNIAENHLKGQLPASIGNL 153
                  DL   S L   + +NN ++     ++     ++ L+ A N++  ++  S    
Sbjct: 70  L--YETLDLESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNIS-RVSCSR--G 119

Query: 154 SALQEIDVRGNRLGGRIPSTISHVRNLISFNVAYNQFSGMIPP--IYNISSLQYIFIHTN 211
              + I +  N++             +   ++  N+   +       +  +L+++ +  N
Sbjct: 120 QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN 179

Query: 212 RFHGSVPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINRNLFSGKVSINFS 271
             +    +   V    L+   +S N L   +     +A  +  + +  N     +     
Sbjct: 180 FIYD---VKGQVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALR 234

Query: 272 RLQNLSRLNLGENNLGTGTTNDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANL 327
             QNL   +L  N    GT  D       +   +++ +   + +           +
Sbjct: 235 FSQNLEHFDLRGNGFHCGTLRD-----FFSKNQRVQTVAKQTVKKLTGQNEEECTV 285

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  108 bits (271), Expect = 4e-25
 Identities = 56/337 (16%), Positives = 116/337 (34%), Gaps = 26/337 (7%)

Query: 223 VNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINRNLFSGKVSINFSRLQNLSRLNLG 282
           + L N +  +   + +       L +   ++ L +N        +  F+    + +L +G
Sbjct: 48  ITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMG 107

Query: 283 ENNLGTGTTNDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQIS 342
            N +     +      +  N   L VL L  N    +      N    +T +++ +N + 
Sbjct: 108 FNAIRYLPPH------VFQNVPLLTVLVLERNDLSSLPRGIFHNT-PKLTTLSMSNNNLE 160

Query: 343 DTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSIQILFLNENFLRGTIPSSLGNLTL 402
               D      +L  L + SN+L     + +  + S+    ++ N L     S+L     
Sbjct: 161 RIEDDTFQATTSLQNLQLSSNRLTH---VDLSLIPSLFHANVSYNLL-----STLAIPIA 212

Query: 403 LTQLILEVNNLQGKIPPSNGNCQNLILLTTRKNKLSGIVPRQLLRIITLSVLLDLSDNLL 462
           + +L    N++   +         L +L  + N L+          +     +DLS N L
Sbjct: 213 VEELDASHNSIN-VVRG--PVNVELTILKLQHNNLTDTAWLLNYPGLV---EVDLSYNEL 266

Query: 463 SGHFPTKVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTISIPSTLSSLK 522
                     ++ L  L IS+N     +        +L+ L +  N     +        
Sbjct: 267 EKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFD 324

Query: 523 SITELDLSRNNLSGHIPQYLENLSFLLFLNMSYNHFE 559
            +  L L  N++   +   L     L  L +S+N ++
Sbjct: 325 RLENLYLDHNSIV-TLK--LSTHHTLKNLTLSHNDWD 358

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  104 bits (261), Expect = 8e-24
 Identities = 73/502 (14%), Positives = 157/502 (31%), Gaps = 70/502 (13%)

Query: 65  LPNNSFRGKIPHEVGNLFRLQNLTLTNNYFLGKILTDLSHCSNLMKFEASNNKLEGEIPV 124
            P       I   +       ++ +           +    +N       N+ +  ++P 
Sbjct: 10  KPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPA 68

Query: 125 KI-SNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISF 183
            +  +   +++LN+ +  ++     +      +Q++ +  N +    P    +V  L   
Sbjct: 69  ALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 128

Query: 184 NVAYNQFSGMIPPIYNISSLQYIFIHTNRFHGSVPLDNGVNLPNLRYFSISGNNLTGSLQ 243
            +  N  S                        S+P     N P L   S+S NNL     
Sbjct: 129 VLERNDLS------------------------SLPRGIFHNTPKLTTLSMSNNNLERIED 164

Query: 244 DSLSNATNLQGLEINRNLFSGKVSINFSRLQNLSRLNLGENNLGTGTTNDLDFITLLTNC 303
           D+    T+LQ L+++ N  +    ++ S + +L   N+  N L           + L   
Sbjct: 165 DTFQATTSLQNLQLSSNRLT---HVDLSLIPSLFHANVSYNLL-----------STLAIP 210

Query: 304 TKLEVLDLHSNRFGGVLPFSLANLS------------------TTMTEIAIGSNQISDTI 345
             +E LD   N    V       L+                    + E+ +  N++   +
Sbjct: 211 IAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIM 270

Query: 346 PDVIANLVNLNALGVESNQLAGTIPLAIGELKSIQILFLNENFLRGTIPSSLGNLTLLTQ 405
                 +  L  L + +N+L   + L    + ++++L L+ N L   +  +      L  
Sbjct: 271 YHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLEN 328

Query: 406 LILEVNNLQGKIPPSNGNCQNLILLTTRKNKLSGIVPRQLLRIITLSVLLDLSDNLLSGH 465
           L L+ N++   +         L  LT   N       R L R +    + D   +    +
Sbjct: 329 LYLDHNSIV-TLKL--STHHTLKNLTLSHNDWDCNSLRALFRNVARPAVDDADQHCKIDY 385

Query: 466 FPTK-------VGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTISIPSTL 518
                           + +   I+      ++    G C++ + +    +          
Sbjct: 386 QLEHGLCCKESDKPYLDRLLQYIALTSVVEKVQRAQGRCSATDTINSVQSLSHYITQQGG 445

Query: 519 SSLKSITELDLSRNNLSGHIPQ 540
             L+   +L+   N L   + Q
Sbjct: 446 VPLQGNEQLEAEVNELRAEVQQ 467

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  101 bits (252), Expect = 1e-22
 Identities = 57/333 (17%), Positives = 107/333 (32%), Gaps = 22/333 (6%)

Query: 227 NLRYFSISGNNLTGSLQDSLSNATNLQGLEINRNLFSGKVSINFSRLQNLSRLNLGENNL 286
             RY           +  +L        + I+              L N   +    + +
Sbjct: 4   QQRYNVKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTM 63

Query: 287 GTGTTNDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQISDTIP 346
                       LL +  ++E+L+L+  +   +  ++ A    T+ ++ +G N I    P
Sbjct: 64  RKLPAA------LLDSFRQVELLNLNDLQIEEIDTYAFAYA-HTIQKLYMGFNAIRYLPP 116

Query: 347 DVIANLVNLNALGVESNQLAGTIPLAIGELKSIQILFLNENFLRGTIPSSLGNLTLLTQL 406
            V  N+  L  L +E N L+            +  L ++ N L      +    T L  L
Sbjct: 117 HVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNL 176

Query: 407 ILEVNNLQGKIPPSNGNCQNLILLTTRKNKLSGIVPRQLLRIITLSVLLDLSDNLLSGHF 466
            L  N L   +        +L       N LS +     +        LD S N ++   
Sbjct: 177 QLSSNRLT-HVDL--SLIPSLFHANVSYNLLSTLAIPIAVEE------LDASHNSINVVR 227

Query: 467 PTKVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTISIPSTLSSLKSITE 526
                    L  L +  N  + +    L     L  + +  N     +      ++ +  
Sbjct: 228 G---PVNVELTILKLQHNNLT-DTAW-LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLER 282

Query: 527 LDLSRNNLSGHIPQYLENLSFLLFLNMSYNHFE 559
           L +S N L   +  Y + +  L  L++S+NH  
Sbjct: 283 LYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL 314

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  103 bits (259), Expect = 1e-23
 Identities = 87/449 (19%), Positives = 153/449 (34%), Gaps = 57/449 (12%)

Query: 105 CSNLMKFEASNNKLEGEIPVKISNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGN 164
            +         + L   +P  +   +    L I +N+L   LPA    L   + ++V GN
Sbjct: 39  NNGNAVLNVGESGLT-TLPDCLPAHI--TTLVIPDNNLT-SLPALPPEL---RTLEVSGN 91

Query: 165 RLGGRIPSTISHVRNLISFNVAYNQFSGMIPPIYNISSLQYIFIHTNRFHGSVPLDNGVN 224
           +L   +P     +  L  F+        +       S L  ++I  N+   S+P    V 
Sbjct: 92  QLT-SLPVLPPGLLELSIFSNPLTHLPALP------SGLCKLWIFGNQLT-SLP----VL 139

Query: 225 LPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINRNLFSGKVSINFSRLQNLSRLNLGEN 284
            P L+  S+S N L  SL    S    L  L    N  +   S+       L  L++ +N
Sbjct: 140 PPGLQELSVSDNQLA-SLPALPSE---LCKLWAYNNQLT---SLPML-PSGLQELSVSDN 191

Query: 285 NLGTGTTNDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQISDT 344
            L           +L T  ++L  L  ++NR    LP   + L     E+ +  N+++ +
Sbjct: 192 QL----------ASLPTLPSELYKLWAYNNRLT-SLPALPSGL----KELIVSGNRLT-S 235

Query: 345 IPDVIANLVNLNALGVESNQLAGTIPLAIGELKSIQILFLNENFLRGTIPSSLGNLTLLT 404
           +P + + L  L    V  N+L  ++P+    L S   L +  N L   +P SL +L+  T
Sbjct: 236 LPVLPSELKELM---VSGNRLT-SLPMLPSGLLS---LSVYRNQLT-RLPESLIHLSSET 287

Query: 405 QLILEVNNLQGKIPPSNGNCQNLILLTTRKNKLSGIVPRQLLRIITLSVLLDLSDNLLSG 464
            + LE N L      +    + +         +                L   + + L  
Sbjct: 288 TVNLEGNPLS---ERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALHLAAADWLVP 344

Query: 465 HFPTKVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTISIPSTLSSLKSI 524
               +              N  +      L   +  E   ++D  F   I S L+ L   
Sbjct: 345 AREGEPAPADRWHMFGQEDN--ADAFSLFLDRLSETENF-IKDAGFKAQISSWLAQLAED 401

Query: 525 TELDLSRNNLSGHIPQYLENLSFLLFLNM 553
             L  +   ++       E+        M
Sbjct: 402 EALRANTFAMATEATSSCEDRVTFFLHQM 430

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 99.6 bits (248), Expect = 3e-22
 Identities = 71/335 (21%), Positives = 119/335 (35%), Gaps = 73/335 (21%)

Query: 225 LPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINRNLFSGKVSINFSRLQNLSRLNLGEN 284
             ++    I  NNLT SL         L+ LE++ N  +  + +    L  LS  +    
Sbjct: 60  PAHITTLVIPDNNLT-SLPALP---PELRTLEVSGNQLT-SLPVLPPGLLELSIFSNPLT 114

Query: 285 NLGTGTTNDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQISDT 344
           +L            L +    L  L +  N+    LP     L     E+++  NQ++ +
Sbjct: 115 HL----------PALPSG---LCKLWIFGNQLT-SLPVLPPGL----QELSVSDNQLA-S 155

Query: 345 IPDVIANLVNLNALGVESNQLAGTIPLAIGELKSIQILFLNENFLRGTIPSSLGNLTLLT 404
           +P + + L  L A     NQL  ++P+    L+    L +++N L  ++P+    L  L 
Sbjct: 156 LPALPSELCKLWAYN---NQLT-SLPMLPSGLQE---LSVSDNQLA-SLPTLPSELYKLW 207

Query: 405 QLILEVNNLQGKIPPSNGNCQNLILLTTRKNKLSGIVPRQLLRIITLSVLLDLSDNLLSG 464
                 NN    +P      + L                             +S N L+ 
Sbjct: 208 AY----NNRLTSLPALPSGLKEL----------------------------IVSGNRLT- 234

Query: 465 HFPTKVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTISIPSTLSSLKSI 524
             P     LK L    +S N  +  +P    G  SL    +  N  T  +P +L  L S 
Sbjct: 235 SLPVLPSELKEL---MVSGNRLT-SLPMLPSGLLSLS---VYRNQLT-RLPESLIHLSSE 286

Query: 525 TELDLSRNNLSGHIPQYLENLSFLLFLNMSYNHFE 559
           T ++L  N LS    Q L  ++     +     F+
Sbjct: 287 TTVNLEGNPLSERTLQALREITSAPGYSGPIIRFD 321

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 92.6 bits (230), Expect = 5e-20
 Identities = 61/310 (19%), Positives = 103/310 (33%), Gaps = 62/310 (20%)

Query: 267 SINFSRLQNLSRLNLGENNLGTGTTNDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLAN 326
            +        + LN+GE+ L T                 +  L +  N     LP     
Sbjct: 33  KMRACLNNGNAVLNVGESGLTTLPDCLP---------AHITTLVIPDNNL-TSLPALPPE 82

Query: 327 LSTTMTEIAIGSNQISDTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSIQILFLNE 386
           L      + +  NQ++ ++P +   L+ L+        L             +  L++  
Sbjct: 83  L----RTLEVSGNQLT-SLPVLPPGLLELSIFSNPLTHLP-------ALPSGLCKLWIFG 130

Query: 387 NFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSNGNCQNLILLTTRKNKLSGIVPRQLL 446
           N L  ++P        L +L +  N L   +P        L       N+L+ + P    
Sbjct: 131 NQLT-SLPVLPPG---LQELSVSDNQLA-SLPALPSELCKLWAY---NNQLTSL-PMLPS 181

Query: 447 RIITLSVLLDLSDNLLSGHFPTKVGNLK-----------------NLVSLDISSNMFSGE 489
            +      L +SDN L+   PT    L                   L  L +S N  +  
Sbjct: 182 GLQE----LSVSDNQLA-SLPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLT-S 235

Query: 490 IPTTLGGCTSLEYLGMQDNSFTISIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLL 549
           +P        L+ L +  N  T S+P   S L     L + RN L+  +P+ L +LS   
Sbjct: 236 LPVLPS---ELKELMVSGNRLT-SLPMLPSGL---LSLSVYRNQLT-RLPESLIHLSSET 287

Query: 550 FLNMSYNHFE 559
            +N+  N   
Sbjct: 288 TVNLEGNPLS 297

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 78.8 bits (194), Expect = 2e-15
 Identities = 73/380 (19%), Positives = 124/380 (32%), Gaps = 76/380 (20%)

Query: 34  QRVTGLDLRHQSVGGVLSPFVGNLNFLRSINLPNNSFRGKIPHEVGNLFRLQNLTLTNNY 93
             +T L +   +    L+        LR++ +  N     +P     L  L   +    +
Sbjct: 61  AHITTLVIPDNN----LTSLPALPPELRTLEVSGNQLT-SLPVLPPGLLELSIFSNPLTH 115

Query: 94  FLGKILTDLSHCSNLMKFEASNNKLEGEIPVKISNLLMLQILNIAENHLKGQLPASIGNL 153
                L  L   S L K     N+L   +PV       LQ L++++N L   LPA    L
Sbjct: 116 -----LPAL--PSGLCKLWIFGNQLT-SLPVLPPG---LQELSVSDNQLA-SLPALPSEL 163

Query: 154 SALQEIDVRGNRLGGRIPSTISHVRNLISFNVAYNQFSGMIPPIYNISSLQYIFIHTNRF 213
             L       N+L   +P   S ++ L   +V+ NQ +  +P     S L  ++ + NR 
Sbjct: 164 CKL---WAYNNQL-TSLPMLPSGLQEL---SVSDNQLA-SLPT--LPSELYKLWAYNNRL 213

Query: 214 HGSVPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINRNLFSGKVSINFSRL 273
             S+P         L+   +SGN LT SL    S                          
Sbjct: 214 T-SLP----ALPSGLKELIVSGNRLT-SLPVLPS-------------------------- 241

Query: 274 QNLSRLNLGENNLGTGTTNDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSTTMTE 333
             L  L +  N L           +L    + L  L ++ N+    LP SL +L ++ T 
Sbjct: 242 -ELKELMVSGNRL----------TSLPMLPSGLLSLSVYRNQL-TRLPESLIHL-SSETT 288

Query: 334 IAIGSNQISDTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSIQIL-FLNENFLRGT 392
           + +  N +S+     +  + +       S  +           +  + L     ++L   
Sbjct: 289 VNLEGNPLSERTLQALREITSAP---GYSGPIIRFDMAGASAPRETRALHLAAADWLVPA 345

Query: 393 IPSSLGNLTLLTQLILEVNN 412
                           E N 
Sbjct: 346 REGEPAPADRWHMFGQEDNA 365

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 55.3 bits (133), Expect = 4e-08
 Identities = 38/190 (20%), Positives = 70/190 (36%), Gaps = 22/190 (11%)

Query: 60  LRSINLPNNSFRGKIPHEVGNLFRLQNLTLTNNYFLGKILTDL-SHCSNLMKFEASNNKL 118
           L  +   NN     +P     L   + L ++ N      LT L    S L +   S N+L
Sbjct: 203 LYKLWAYNNRLT-SLPALPSGL---KELIVSGNR-----LTSLPVLPSELKELMVSGNRL 253

Query: 119 EGEIPVKISNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRL-------GGRIP 171
              +P+  S L     L++  N L  +LP S+ +LS+   +++ GN L          I 
Sbjct: 254 T-SLPMLPSGL---LSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREIT 308

Query: 172 STISHVRNLISFNVAYNQFSGMIPPIYNISSLQYIFIHTNRFHGSVPLDNGVNLPNLRYF 231
           S   +   +I F++A          ++  ++   +         +          N   F
Sbjct: 309 SAPGYSGPIIRFDMAGASAPRETRALHLAAADWLVPAREGEPAPADRWHMFGQEDNADAF 368

Query: 232 SISGNNLTGS 241
           S+  + L+ +
Sbjct: 369 SLFLDRLSET 378

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 98.8 bits (246), Expect = 4e-22
 Identities = 92/509 (18%), Positives = 175/509 (34%), Gaps = 61/509 (11%)

Query: 60  LRSINLPNNSFRGKIPHEVGNLFRLQNLTLTNNYFLGKILTDLSHCSNLMKFEASNNKLE 119
              +N+  N        ++ +L +L+ L +++N      ++       L   + S+NKL 
Sbjct: 23  TTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV 82

Query: 120 GEIPVKISNLLMLQILNIAENHLKG-QLPASIGNLSALQEIDVRGNRLGGRIPSTISHVR 178
               +     + L+ L+++ N      +    GN+S L+ + +    L       I+H+ 
Sbjct: 83  K---ISCHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLN 139

Query: 179 NLISFNVAYNQFSGMIPP----IYNISSLQYIFIHTNRFHGSVPLDNGVNLPNLRYFSIS 234
                 V    +     P     +N  SL  +F     FH  +   +   + NL   +I 
Sbjct: 140 ISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFH-FILDVSVKTVANLELSNIK 198

Query: 235 GNNLTGSLQDSLSNATNLQGLEINRNLFSGKVSINFSRLQNLSRLNLGENNLGTGTTNDL 294
                      LS    LQ      NL    +   +                     N  
Sbjct: 199 CVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTW---------------------NSF 237

Query: 295 DFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSTT----MTEIAIGSNQISDTIPDVIA 350
             I  L   T +    + + +  G L F   + S T    ++   + S+        +  
Sbjct: 238 IRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYE 297

Query: 351 NLVNLNALGVESNQLAGTIPLAIGELKSIQILFLNENFLRGTIPSSLGNLTLLTQLILEV 410
              N+N      +       L   ++     L  + N L  T+  + G+LT L  LIL++
Sbjct: 298 IFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQM 357

Query: 411 NNLQGKIPPSNGNCQNLILLTTRKNKLSGIVPRQLLRIITLSVLLDLSDNLLSGHFPTKV 470
           N L+ ++         +  L                        LD+S N +S       
Sbjct: 358 NQLK-ELSKIAEMTTQMKSLQQ----------------------LDISQNSVSYDEKKGD 394

Query: 471 -GNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTISIPSTLSSLKSITELDL 529
               K+L+SL++SSN+ +  I   L     ++ L +  N    SIP  +  L+++ EL++
Sbjct: 395 CSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNV 451

Query: 530 SRNNLSGHIPQYLENLSFLLFLNMSYNHF 558
           + N L        + L+ L  + +  N +
Sbjct: 452 ASNQLKSVPDGIFDRLTSLQKIWLHTNPW 480

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 81.8 bits (202), Expect = 1e-16
 Identities = 55/352 (15%), Positives = 112/352 (31%), Gaps = 29/352 (8%)

Query: 226 PNLRYFSISGNNLTGSLQDSLSNATNLQGLEINRNLFSGKVSINFSRLQNLSRLNLGENN 285
                 +IS N ++      + + + L+ L I+ N         F   Q L  L+L  N 
Sbjct: 21  QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNK 80

Query: 286 LGTGTTNDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQISDTI 345
           L       +           L+ LDL  N F  +         + +  + + +  +  + 
Sbjct: 81  LVK-----ISCHPT----VNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSS 131

Query: 346 PDVIANLVNLNALGVESNQLAGTIPLAIGELKSIQILFLNENFLRGTIPSSLGNLTLLTQ 405
              IA+L     L V               L+      L+  F        + ++++ T 
Sbjct: 132 VLPIAHLNISKVLLVLGETYGEKEDP--EGLQDFNTESLHIVFPTNKEFHFILDVSVKTV 189

Query: 406 LILEVNNLQG-----------KIPPSNGNCQNLILLTTRKNKLSGIVPRQLLRIITLSVL 454
             LE++N++             I         L  LT    + +     ++L+++  + +
Sbjct: 190 ANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTV 249

Query: 455 LDLS-------DNLLSGHFPTKVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQD 507
              S         L    F     +LK L    + S++F           +++       
Sbjct: 250 WYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTV 309

Query: 508 NSFTISIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLLFLNMSYNHFE 559
           +   +      S +     LD S N L+  + +   +L+ L  L +  N  +
Sbjct: 310 SGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLK 361

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 76.4 bits (188), Expect = 7e-15
 Identities = 62/402 (15%), Positives = 132/402 (32%), Gaps = 49/402 (12%)

Query: 55  GNLNFLRSINLPNNSFRG-KIPHEVGNLFRLQNLTLTNNYFLGKILTDLSHCSNLMKFEA 113
                L+ ++L  N+F    I  E GN+ +L+ L L+  +     +  ++H +       
Sbjct: 87  HPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLV 146

Query: 114 SNNKLEGEIPV---KISNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRI 170
                  +      +  N   L I+          L  S+  ++ L+  +++      + 
Sbjct: 147 LGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKC 206

Query: 171 PSTISHVRNLISFNVAYN----------QFSGMIPPIYNISSLQYIFIHTNRFHGSVPLD 220
              +S +  L +     N               I  +   +++ Y  I   +  G +   
Sbjct: 207 SYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFR 266

Query: 221 --------------------------NGV--NLPNLRYFSISGNNLTGSLQDSLSNATNL 252
                                     + +     N+   + + +          S  +  
Sbjct: 267 DFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPF 326

Query: 253 QGLEINRNLFSGKVSINFSRLQNLSRLNLGENNLGTGTTNDLDFITLLTNCTKLEVLDLH 312
             L+ + NL +  V  N   L  L  L L  N L   +        +      L+ LD+ 
Sbjct: 327 LHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQM----KSLQQLDIS 382

Query: 313 SNRFGGVLPFSLANLSTTMTEIAIGSNQISDTIPDVIANLVNLNALGVESNQLAGTIPLA 372
            N           + + ++  + + SN ++DTI   +     +  L + SN++  +IP  
Sbjct: 383 QNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL--PPRIKVLDLHSNKIK-SIPKQ 439

Query: 373 IGELKSIQILFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQ 414
           + +L+++Q L +  N L+         LT L ++ L  N   
Sbjct: 440 VVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWD 481

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 58.3 bits (141), Expect = 3e-09
 Identities = 49/267 (18%), Positives = 96/267 (35%), Gaps = 21/267 (7%)

Query: 308 VLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQISDTIPDVIANLVNLNALGVESNQLAG 367
           ++D   N    V P    +LS   T + I  N IS+     I +L  L  L +  N++  
Sbjct: 4   LVDRSKNGLIHV-P---KDLSQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQY 59

Query: 368 TIPLAIGELKSIQILFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSN--GNCQ 425
                    + ++ L L+ N L   I         L  L L  N     +P     GN  
Sbjct: 60  LDISVFKFNQELEYLDLSHNKLV-KISC--HPTVNLKHLDLSFNAFD-ALPICKEFGNMS 115

Query: 426 NLILLTTRKNKLSGIVPRQLLRIITLSVLLDLSDNLLSGHFPTKVGNL--KNLVSLDISS 483
            L  L      L       +  +    VLL L +       P  + +   ++L  +  ++
Sbjct: 116 QLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTN 175

Query: 484 NMFSGEIPTTLGGCTSLEYLGMQDN------SFTISIPSTLSSLKSITELDLSRNNLSGH 537
             F   +  ++    +LE   ++        S+ +SI + L +   ++ L L+    + +
Sbjct: 176 KEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWN 235

Query: 538 IPQYLENL---SFLLFLNMSYNHFEGK 561
               +  L   + + + ++S    +G+
Sbjct: 236 SFIRILQLVWHTTVWYFSISNVKLQGQ 262

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 94.0 bits (234), Expect = 1e-20
 Identities = 72/417 (17%), Positives = 127/417 (30%), Gaps = 55/417 (13%)

Query: 132 LQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPS-TISHVRNLISFNVAYNQF 190
           +  ++++ N +      S   L  LQ + V     G  I + T   + +LI   + YNQF
Sbjct: 32  VNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQF 91

Query: 191 SGMIPP--IYNISSLQYIFIHTNRFHGSVPLDNGV--NLPNLRYFSISGNNLTG-SLQDS 245
              +       +++L+ + +          L       L +L    +  NN+        
Sbjct: 92  L-QLETGAFNGLANLEVLTLTQCNLD-GAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASF 149

Query: 246 LSNATNLQGLEINRNLFSGKVSINFSRLQ--NLSRLNLGENNLGTGTTNDLDFIT--LLT 301
             N      L++  N        +    Q  + + L L    L       L +       
Sbjct: 150 FLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPF 209

Query: 302 NCTKLEVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQISDTIPDVIANLVNLNALGVE 361
             T +  LDL  N F   +     +                  I  +I +          
Sbjct: 210 KNTSITTLDLSGNGFKESMAKRFFDAIAGTK------------IQSLILSNSYNMGSSFG 257

Query: 362 SNQLAGTIPLAIGELK--SIQILFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPP 419
                         L+   ++   L+++ +   + S   + T L QL L  N +  KI  
Sbjct: 258 HTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEIN-KIDD 316

Query: 420 SNGNCQNLILLTTRKNKLSGIVPRQLLRIITLSVLLDLSDNLLSGHFPTKV-GNLKNLVS 478
                  L  L                        L+LS N L     +++  NL  L  
Sbjct: 317 --NAFWGLTHLLK----------------------LNLSQNFLG-SIDSRMFENLDKLEV 351

Query: 479 LDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTISIPS-TLSSLKSITELDLSRNNL 534
           LD+S N        +  G  +L+ L +  N    S+P      L S+ ++ L  N  
Sbjct: 352 LDLSYNHIRALGDQSFLGLPNLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPW 407

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 92.9 bits (231), Expect = 3e-20
 Identities = 66/394 (16%), Positives = 127/394 (32%), Gaps = 42/394 (10%)

Query: 169 RIPSTISHVRNLISFNVAYNQFSGMIPP--IYNISSLQYIFIHTNRFHGSVPLDNGVNLP 226
           ++P   +HV  +   +++ N  +  +       +  LQ++ +        +  +    L 
Sbjct: 24  QVPELPAHVNYV---DLSLNSIA-ELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLS 79

Query: 227 NLRYFSISGNNLTGSLQDSLSNATNLQGLEINRN-LFSGKVSIN-FSRLQNLSRLNLGEN 284
           +L    +  N        + +   NL+ L + +  L    +S N F  L +L  L L +N
Sbjct: 80  SLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDN 139

Query: 285 NLGTGTTNDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQISDT 344
           N+       +   +   N  +  VLDL  N+   +    L N                  
Sbjct: 140 NIKK-----IQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFT----------- 183

Query: 345 IPDVIANLVNLNALGVESNQLAGTIPLAIGELKSIQILFLNENFLRGTIPSSLGNLTLLT 404
               +  L ++    +    L         +  SI  L L+ N  + ++     +    T
Sbjct: 184 ----LLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGT 239

Query: 405 QLI-LEVNNLQGKIPPSNGNCQNLILLTTRKNKLSGIVPRQLLRIITLSVLLDLSDNLLS 463
           ++  L ++N                          G+    +          DLS + + 
Sbjct: 240 KIQSLILSNSYNMGSSFGHTN----FKDPDNFTFKGLEASGVKT-------CDLSKSKIF 288

Query: 464 GHFPTKVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTISIPS-TLSSLK 522
               +   +  +L  L ++ N  +        G T L  L +  N    SI S    +L 
Sbjct: 289 ALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLG-SIDSRMFENLD 347

Query: 523 SITELDLSRNNLSGHIPQYLENLSFLLFLNMSYN 556
            +  LDLS N++     Q    L  L  L +  N
Sbjct: 348 KLEVLDLSYNHIRALGDQSFLGLPNLKELALDTN 381

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 86.3 bits (214), Expect = 3e-18
 Identities = 54/355 (15%), Positives = 117/355 (32%), Gaps = 26/355 (7%)

Query: 84  LQNLTLTNNYFLGKILTDLSHCSNLMKFEASNNKLEGEIPVKI-SNLLMLQILNIAENHL 142
           +  + L+ N       T  S   +L   +         I       L  L IL +  N  
Sbjct: 32  VNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQF 91

Query: 143 KGQLPASI-GNLSALQEIDVRGNRL-GGRIPSTI-SHVRNLISFNVAYNQFSGMIPPIY- 198
             QL       L+ L+ + +    L G  +       + +L    +  N    + P  + 
Sbjct: 92  L-QLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFF 150

Query: 199 -NISSLQYIFIHTNRF---------HGSVPLDNGVNLPNLRYFSISGNNLTGSLQDSLSN 248
            N+     + +  N+          +        + L ++    ++   L      +   
Sbjct: 151 LNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFK 210

Query: 249 ATNLQGLEINRNLFSGKVSINFSRLQNLSRLNLGENNLGTGTTNDLDFITL--LTNCT-- 304
            T++  L+++ N F   ++  F      +++     +      +           N T  
Sbjct: 211 NTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFK 270

Query: 305 -----KLEVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQISDTIPDVIANLVNLNALG 359
                 ++  DL  ++   +L    ++  T + ++ +  N+I+    +    L +L  L 
Sbjct: 271 GLEASGVKTCDLSKSKIFALLKSVFSHF-TDLEQLTLAQNEINKIDDNAFWGLTHLLKLN 329

Query: 360 VESNQLAGTIPLAIGELKSIQILFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQ 414
           +  N L          L  +++L L+ N +R     S   L  L +L L+ N L+
Sbjct: 330 LSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLK 384

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 80.2 bits (198), Expect = 3e-16
 Identities = 72/419 (17%), Positives = 138/419 (32%), Gaps = 46/419 (10%)

Query: 22  CQWTGVTCGHRR--------QRVTGLDLRHQSVGGVLSPFVGNLNFLRSINLPNNSFRGK 73
                  C +R           V  +DL   S+  +       L  L+ + +   +    
Sbjct: 10  VIGYNAICINRGLHQVPELPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLV 69

Query: 74  IPHEV-GNLFRLQNLTLTNNYFLGKILTDLS-----HCSNLMKFEASNNKL-EGEIPVKI 126
           I +     L  L  L L  N         L        +NL     +   L    +    
Sbjct: 70  IRNNTFRGLSSLIILKLDYN-----QFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNF 124

Query: 127 -SNLLMLQILNIAENHLKGQLPASI-GNLSALQEIDVRGNRLGGRIPSTISHVRNLISFN 184
              L  L++L + +N++K   PAS   N+     +D+  N+        +  +      N
Sbjct: 125 FKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNK--------VKSICEEDLLN 176

Query: 185 VAYNQFSGMIPPIYNISSLQYIFIHTNRFHGSVPLDNGVNLPNLRYFSISGNNLTGSLQD 244
                F+ +      +SS+    ++     G     N     ++    +SGN    S+  
Sbjct: 177 FQGKHFTLL-----RLSSITLQDMNEYWL-GWEKCGNPFKNTSITTLDLSGNGFKESMAK 230

Query: 245 SLSNATNLQ-----GLEINRNLFSGKVSINFSRLQNLSRLNLGENNLGT--GTTNDLDFI 297
              +A          L  + N+ S     NF    N +   L  + + T   + + +  +
Sbjct: 231 RFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFAL 290

Query: 298 --TLLTNCTKLEVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQISDTIPDVIANLVNL 355
             ++ ++ T LE L L  N    +   +   L T + ++ +  N +      +  NL  L
Sbjct: 291 LKSVFSHFTDLEQLTLAQNEINKIDDNAFWGL-THLLKLNLSQNFLGSIDSRMFENLDKL 349

Query: 356 NALGVESNQLAGTIPLAIGELKSIQILFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQ 414
             L +  N +      +   L +++ L L+ N L+         LT L ++ L  N   
Sbjct: 350 EVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 408

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 93.8 bits (233), Expect = 2e-20
 Identities = 72/466 (15%), Positives = 160/466 (34%), Gaps = 27/466 (5%)

Query: 84  LQNLTLTNNYFLGKILTDLSHCSNLMKFEASNNKLEGEIPVKI-SNLLMLQILNIAENHL 142
            + L+L+ N      + D+S  S L     S+N++   +   +      L+ L+++ N L
Sbjct: 54  TKALSLSQNSISELRMPDISFLSELRVLRLSHNRIR-SLDFHVFLFNQDLEYLDVSHNRL 112

Query: 143 KGQLPASIGNLSALQEIDVRGNRLGG-RIPSTISHVRNLISFNVAYNQFSGMIPPIYNIS 201
           +  +      +++L+ +D+  N      +     ++  L    ++  +F  +        
Sbjct: 113 QN-ISC--CPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHL 169

Query: 202 SLQYIFIHTNRFHGSVPLDNGVNLPNLRYFSISGNN---LTGSLQDSLSNATNLQ--GLE 256
            L  I +    +H        + +PN     +  +     +  +  S++   +LQ   ++
Sbjct: 170 HLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIK 229

Query: 257 INRNLFSGKVSINFSRLQNLSRLNLGENNLGTGTTNDLDFITLLTNCTKLEVLDLHSNRF 316
           +N       ++      +  + LN+   ++ T T      +        +E L++++   
Sbjct: 230 LNDENCQRLMTFLSELTRGPTLLNVTLQHIET-TWKCSVKLFQFFWPRPVEYLNIYNLTI 288

Query: 317 GGVLPFSLANLSTTMTEIA----IGSNQISDTIPDVIANLVNLNALGVESNQLAGTIPLA 372
              +       S T  +      + +     +   + +    +N   +  +       + 
Sbjct: 289 TERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVC 348

Query: 373 IGELKSIQILFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSNG---NCQNLIL 429
                S   L   +N    ++      L  L  LIL+ N L+           N  +L  
Sbjct: 349 PPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLK-NFFKVALMTKNMSSLET 407

Query: 430 LTTRKNKLSGIVPRQLLRIITLSVLLDLSDN-LLSGHFPTKVGNLKNLVSLDISSNMFSG 488
           L    N L+     +        ++L+LS N L    F      +K    LD+ +N    
Sbjct: 408 LDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKV---LDLHNNRIM- 463

Query: 489 EIPTTLGGCTSLEYLGMQDNSFTISIP-STLSSLKSITELDLSRNN 533
            IP  +    +L+ L +  N    S+P      L S+  + L  N 
Sbjct: 464 SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNP 508

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 80.3 bits (198), Expect = 4e-16
 Identities = 72/441 (16%), Positives = 150/441 (34%), Gaps = 27/441 (6%)

Query: 132 LQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVAYNQFS 191
            + L++++N +       I  LS L+ + +  NR+           ++L   +V++N+  
Sbjct: 54  TKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ 113

Query: 192 GMIPPIYNISSLQYIFIHTNRFHGSVPLDNGV-NLPNLRYFSISGNNLTGSLQDSLSN-- 248
            +      ++SL+++ +  N F   +P+     NL  L +  +S           +++  
Sbjct: 114 NI--SCCPMASLRHLDLSFNDFD-VLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLH 170

Query: 249 ----ATNLQGLEINRNLFSGKVSINFSRLQNLSRLNLGENNLGTGTTNDLDFITLLTNCT 304
                 +L    I           N + L  +   N   +     + N L  + L    +
Sbjct: 171 LSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQL----S 226

Query: 305 KLEVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQISDTIPDV-IANLVNLNALGVESN 363
            +++ D +  R    L       +     +         ++          +  L + + 
Sbjct: 227 NIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNL 286

Query: 364 QLAGTIPLAIG-----ELKSIQILFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIP 418
            +   I           LKS+ I  +       +  +       +   +L +++      
Sbjct: 287 TITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHM 346

Query: 419 PSNGNCQNLILLTTRKNKLSGIVPRQLLRIITLSVLLDLSDNLLSGHFPT--KVGNLKNL 476
               +  +   L   +N  +  V +    +  L   L L  N L   F       N+ +L
Sbjct: 347 VCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQ-TLILQRNGLKNFFKVALMTKNMSSL 405

Query: 477 VSLDISSNMF-SGEIPTTLGGCTSLEYLGMQDNSFTISIPSTLSSLKSITELDLSRNNLS 535
            +LD+S N   S     T     S+  L +  N  T S+   L     +  LDL  N + 
Sbjct: 406 ETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPP--KVKVLDLHNNRIM 463

Query: 536 GHIPQYLENLSFLLFLNMSYN 556
             IP+ + +L  L  LN++ N
Sbjct: 464 -SIPKDVTHLQALQELNVASN 483

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 72.6 bits (178), Expect = 1e-13
 Identities = 50/337 (14%), Positives = 108/337 (32%), Gaps = 21/337 (6%)

Query: 224 NLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINRNLFSGKVSINFSRLQNLSRLNLGE 283
            L  LR   +S N +            +L+ L+++ N      +I+   + +L  L+L  
Sbjct: 74  FLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ---NISCCPMASLRHLDLSF 130

Query: 284 NNLGTGTTNDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQISD 343
           N+      + L       N TKL  L L + +F  +    +A+L  +   + + S  I  
Sbjct: 131 NDF-----DVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKG 185

Query: 344 TIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSIQILFLNENFLRGTIPSSLGNLTLL 403
              + +    N   L +  +  +         + ++  L L+   L       L      
Sbjct: 186 GETESLQIP-NTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSE 244

Query: 404 TQLILEVNNLQGKIPPSNGNCQNLILLTTRKNKLSGIVPRQLLRIITLSVL-LDLSDNLL 462
                 + N+  +   +   C   +                   +  L++  L +++ + 
Sbjct: 245 LTRGPTLLNVTLQHIETTWKCSVKLFQFF-----------WPRPVEYLNIYNLTITERID 293

Query: 463 SGHFPTKVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTISIPSTLSSLK 522
              F      LK+L+   + + +F             +    +  +           S  
Sbjct: 294 REEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPS 353

Query: 523 SITELDLSRNNLSGHIPQYLENLSFLLFLNMSYNHFE 559
           S T L+ ++N  +  + Q    L  L  L +  N  +
Sbjct: 354 SFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLK 390

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 69.9 bits (171), Expect = 9e-13
 Identities = 66/471 (14%), Positives = 143/471 (30%), Gaps = 75/471 (15%)

Query: 56  NLNFLRSINLPNNSFRGKIPHEVGNLFRLQNLTLTNNYFLG-KILTDLSHCSNLMKFEAS 114
               L  +++ +N  +  I      +  L++L L+ N F    +  +  + + L     S
Sbjct: 98  FNQDLEYLDVSHNRLQ-NIS--CCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLS 154

Query: 115 NNKLEGEIPVKISNL-LMLQILNIAENHLKGQLPASIG-------NLSALQEIDVRGNRL 166
             K      + +++L L   +L++   H+KG    S+        +L             
Sbjct: 155 AAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVN 214

Query: 167 GGRIPSTISHVRNLISFNVAYNQFSGMIPPIYNISSLQYIFIHTNRF--HGSVPLDNGVN 224
                     + N+   +    +    +  +    +L  + +         SV L     
Sbjct: 215 MSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFW 274

Query: 225 LPNLRYFSISGNNLTGSLQDSLSNATN-----LQGLEINRNLFSGKVSINFSRLQNLSRL 279
              + Y +I    +T  +       +      L    +   +F       +S    ++  
Sbjct: 275 PRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIK 334

Query: 280 NLGENNLGTGTTNDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSN 339
            L  ++           +    + +    L+                            N
Sbjct: 335 MLSISDTPFI------HMVCPPSPSSFTFLNFT-------------------------QN 363

Query: 340 QISDTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSIQILFLNENFLRGTIPSSLGN 399
             +D++    + L  L  L ++ N L           K++  L   +  L      +   
Sbjct: 364 VFTDSVFQGCSTLKRLQTLILQRNGLK-NFFKVALMTKNMSSLETLDVSLNSLNSHAYDR 422

Query: 400 LTLLTQLILEVNNLQGKIPPSNGNCQNLILLTTRKNKLSGIVPRQLLRIITLSVLLDLSD 459
                                    +++++L    N L+G V R L   +    +LDL +
Sbjct: 423 TCAWA--------------------ESILVLNLSSNMLTGSVFRCLPPKVK---VLDLHN 459

Query: 460 NLLSGHFPTKVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSF 510
           N +    P  V +L+ L  L+++SN             TSL+Y+ + DN +
Sbjct: 460 NRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPW 509

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 53.7 bits (129), Expect = 1e-07
 Identities = 42/259 (16%), Positives = 81/259 (31%), Gaps = 11/259 (4%)

Query: 303 CTKLEVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQISDTIPDVIANLVNLNALGVES 362
                ++D  +     V      +L      +++  N IS+     I+ L  L  L +  
Sbjct: 30  NELESMVDYSNRNLTHVP----KDLPPRTKALSLSQNSISELRMPDISFLSELRVLRLSH 85

Query: 363 NQLAGTIPLAIGELKSIQILFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSN- 421
           N++           + ++ L ++ N L+  I      +  L  L L  N+    +P    
Sbjct: 86  NRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISC--CPMASLRHLDLSFNDFD-VLPVCKE 141

Query: 422 -GNCQNLILLTTRKNKLSGIVPRQLLRIITLSVLLDLSDNLLSGHFPTKVGNLKNLVSLD 480
            GN   L  L     K   +    +  +    +LLDL    +     T+   + N   L 
Sbjct: 142 FGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIK-GGETESLQIPNTTVLH 200

Query: 481 ISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTISIPSTLSSLKSITELDLSRNNLSGHIPQ 540
           +  +  S           +L +L + +          L +  S      +  N++    +
Sbjct: 201 LVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIE 260

Query: 541 YLENLSFLLFLNMSYNHFE 559
                S  LF        E
Sbjct: 261 TTWKCSVKLFQFFWPRPVE 279

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 92.1 bits (229), Expect = 5e-20
 Identities = 58/264 (21%), Positives = 101/264 (38%), Gaps = 16/264 (6%)

Query: 305 KLEVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQISDTIPDVIANLVNLNALGVESNQ 364
           +   +         V P     + +    + +  N I     D   +L +L  L +  N 
Sbjct: 55  QFSKVVCTRRGLSEV-P---QGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNS 110

Query: 365 LAGTIPLAIGELKSIQILFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSN-GN 423
           +      A   L S+  L L +N+L      +   L+ L +L L  N ++  IP      
Sbjct: 111 IRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIE-SIPSYAFNR 169

Query: 424 CQNLILLT-TRKNKLSGIVPRQLLRIITLSVLLDLSDNLLSGHFPTKVGNLKNLVSLDIS 482
             +L+ L      KL  I       +  L  L +L    +    P  +  L  L  L++S
Sbjct: 170 VPSLMRLDLGELKKLEYISEGAFEGLFNLKYL-NLGMCNIK-DMPN-LTPLVGLEELEMS 226

Query: 483 SNMFSGEIPTTLGGCTSLEYLGMQDNSFTISIPSTLSSLKSITELDLSRNNLSGHIPQYL 542
            N F    P +  G +SL+ L + ++  ++   +    L S+ EL+L+ NNLS       
Sbjct: 227 GNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLF 286

Query: 543 ENLSFLLFLNMSYNHFEGKVPIEC 566
             L +L+ L++ +N      P  C
Sbjct: 287 TPLRYLVELHLHHN------PWNC 304

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 84.0 bits (208), Expect = 2e-17
 Identities = 48/258 (18%), Positives = 98/258 (37%), Gaps = 36/258 (13%)

Query: 132 LQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVAYNQFS 191
            + LN+ EN+++     +  +L  L+ + +  N +        + + +L +  +  N  +
Sbjct: 77  TRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLT 136

Query: 192 GMIPP--IYNISSLQYIFIHTNRFHGSVPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNA 249
            +IP      +S L+ +++  N    S+P      +P+L    +        + +     
Sbjct: 137 -VIPSGAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYISEGA--- 191

Query: 250 TNLQGLEINRNLFSGKVSINFSRLQNLSRLNLGENNLGTGTTNDLDFITLLTNCTKLEVL 309
                               F  L NL  LNLG  N+          +  LT    LE L
Sbjct: 192 --------------------FEGLFNLKYLNLGMCNIKD--------MPNLTPLVGLEEL 223

Query: 310 DLHSNRFGGVLPFSLANLSTTMTEIAIGSNQISDTIPDVIANLVNLNALGVESNQLAGTI 369
           ++  N F  + P S   L +++ ++ + ++Q+S    +    L +L  L +  N L+   
Sbjct: 224 EMSGNHFPEIRPGSFHGL-SSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLP 282

Query: 370 PLAIGELKSIQILFLNEN 387
                 L+ +  L L+ N
Sbjct: 283 HDLFTPLRYLVELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 83.3 bits (206), Expect = 3e-17
 Identities = 52/262 (19%), Positives = 88/262 (33%), Gaps = 38/262 (14%)

Query: 156 LQEIDVRGNRLGGRIPSTISHVRNLISFNVAYNQFSGMIPPIYNISSLQYIFIHTNRFHG 215
            + +++  N +      T  H+ +L    +  N                   I    F+G
Sbjct: 77  TRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIR---------------QIEVGAFNG 121

Query: 216 SVPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINRNLFSGKVSINFSRLQN 275
                    L +L    +  N LT     +    + L+ L +  N      S  F+R+ +
Sbjct: 122 ---------LASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPS 172

Query: 276 LSRLNLGENNLGTGTTNDLDFIT--LLTNCTKLEVLDLHSNRFGGVLPFS-LANLSTTMT 332
           L RL+LGE          L++I+         L+ L+L       +   + L  L     
Sbjct: 173 LMRLDLGEL-------KKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGL----E 221

Query: 333 EIAIGSNQISDTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSIQILFLNENFLRGT 392
           E+ +  N   +  P     L +L  L V ++Q++     A   L S+  L L  N L   
Sbjct: 222 ELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSL 281

Query: 393 IPSSLGNLTLLTQLILEVNNLQ 414
                  L  L +L L  N   
Sbjct: 282 PHDLFTPLRYLVELHLHHNPWN 303

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 64.4 bits (157), Expect = 4e-11
 Identities = 47/279 (16%), Positives = 91/279 (32%), Gaps = 42/279 (15%)

Query: 22  CQWTG--VTCGHRR---------QRVTGLDLRHQSVGGVLSPFVGNLNFLRSINLPNNSF 70
           C      V C  R               L+L   ++  + +    +L+ L  + L  NS 
Sbjct: 52  CSNQFSKVVCTRRGLSEVPQGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSI 111

Query: 71  RGKIPHEV-GNLFRLQNLTLTNNYFLGKILTDLSHCSNLMKFEASNNKLEGEIPVKI-SN 128
           R +I       L  L  L L                         +N L   IP      
Sbjct: 112 R-QIEVGAFNGLASLNTLEL------------------------FDNWLT-VIPSGAFEY 145

Query: 129 LLMLQILNIAENHLKGQLPASIGNLSALQEIDV-RGNRLGGRIPSTISHVRNLISFNVAY 187
           L  L+ L +  N ++     +   + +L  +D+    +L          + NL   N+  
Sbjct: 146 LSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGM 205

Query: 188 NQFSGMIPPIYNISSLQYIFIHTNRFHGSVPLDNGVNLPNLRYFSISGNNLTGSLQDSLS 247
                 +P +  +  L+ + +  N F   +   +   L +L+   +  + ++   +++  
Sbjct: 206 CNIK-DMPNLTPLVGLEELEMSGNHFP-EIRPGSFHGLSSLKKLWVMNSQVSLIERNAFD 263

Query: 248 NATNLQGLEINRNLFSGKVSINFSRLQNLSRLNLGENNL 286
              +L  L +  N  S      F+ L+ L  L+L  N  
Sbjct: 264 GLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPW 302

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 89.8 bits (223), Expect = 2e-19
 Identities = 56/244 (22%), Positives = 95/244 (38%), Gaps = 12/244 (4%)

Query: 325 ANLSTTMTEIAIGSNQISDTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSIQILFL 384
             +ST    + +  NQI     +   +L +L  L +  N +      A   L ++  L L
Sbjct: 60  DGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLEL 119

Query: 385 NENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSN-GNCQNLILLT-TRKNKLSGIVP 442
            +N L      +   L+ L +L L  N ++  IP        +L  L      +LS I  
Sbjct: 120 FDNRLTTIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGELKRLSYISE 178

Query: 443 RQLLRIITLSVLLDLSDNLLSGHFPTKVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEY 502
                +  L  L +L+   L    P  +  L  L  LD+S N  S   P +  G   L+ 
Sbjct: 179 GAFEGLSNLRYL-NLAMCNLR-EIPN-LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQK 235

Query: 503 LGMQDNSFTISIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLLFLNMSYNHFEGKV 562
           L M  +   +   +   +L+S+ E++L+ NNL+         L  L  +++ +N      
Sbjct: 236 LWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHN------ 289

Query: 563 PIEC 566
           P  C
Sbjct: 290 PWNC 293

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 82.5 bits (204), Expect = 6e-17
 Identities = 52/262 (19%), Positives = 94/262 (35%), Gaps = 38/262 (14%)

Query: 156 LQEIDVRGNRLGGRIPSTISHVRNLISFNVAYNQFSGMIPPIYNISSLQYIFIHTNRFHG 215
            + +++  N++     ++  H+R+L    ++ N           I +     I    F+G
Sbjct: 66  TRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNH----------IRT-----IEIGAFNG 110

Query: 216 SVPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINRNLFSGKVSINFSRLQN 275
                    L NL    +  N LT     +    + L+ L +  N      S  F+R+ +
Sbjct: 111 ---------LANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPS 161

Query: 276 LSRLNLGENNLGTGTTNDLDFIT--LLTNCTKLEVLDLHSNRFGGVLPFS-LANLSTTMT 332
           L RL+LGE          L +I+       + L  L+L       +   + L  L     
Sbjct: 162 LRRLDLGELKR-------LSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKL----D 210

Query: 333 EIAIGSNQISDTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSIQILFLNENFLRGT 392
           E+ +  N +S   P     L++L  L +  +Q+      A   L+S+  + L  N L   
Sbjct: 211 ELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLL 270

Query: 393 IPSSLGNLTLLTQLILEVNNLQ 414
                  L  L ++ L  N   
Sbjct: 271 PHDLFTPLHHLERIHLHHNPWN 292

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 69.8 bits (171), Expect = 6e-13
 Identities = 55/237 (23%), Positives = 92/237 (38%), Gaps = 17/237 (7%)

Query: 83  RLQNLTLTNNYFLGKILTDLSHCSNLMKFEASNNKLEGEIPVKI-SNLLMLQILNIAENH 141
             + L L  N      +    H  +L   + S N +   I +   + L  L  L + +N 
Sbjct: 65  NTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR-TIEIGAFNGLANLNTLELFDNR 123

Query: 142 LKGQLPASIGNLSALQEIDVRGNRLGGRIPS-TISHVRNLISFNVA-YNQFSGMIPP--I 197
           L      +   LS L+E+ +R N +   IPS   + + +L   ++    + S  I     
Sbjct: 124 LTTIPNGAFVYLSKLKELWLRNNPI-ESIPSYAFNRIPSLRRLDLGELKRLS-YISEGAF 181

Query: 198 YNISSLQYIFIHTNRFHGSVPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEI 257
             +S+L+Y+ +          + N   L  L    +SGN+L+     S     +LQ L +
Sbjct: 182 EGLSNLRYLNLAMCNLRE---IPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWM 238

Query: 258 NRNLFSGKVSINFSRLQNLSRLNLGENNLGTGTTNDLDFITLLTNCTKLEVLDLHSN 314
            ++         F  LQ+L  +NL  NNL     +      L T    LE + LH N
Sbjct: 239 IQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHD------LFTPLHHLERIHLHHN 289

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 87.4 bits (217), Expect = 2e-18
 Identities = 69/426 (16%), Positives = 138/426 (32%), Gaps = 52/426 (12%)

Query: 127 SNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVA 186
            N                    S   L+ L  +D   + +     + I  +  L      
Sbjct: 18  DNFASEVAAAFEMQATD---TISEEQLATLTSLDCHNSSITD--MTGIEKLTGLTKLICT 72

Query: 187 YNQFSGMIPPIYNISSLQYIFIHTNRFHGSVPLDNGVNLPNLRYFSISGNNLTGSLQDSL 246
            N  + +   +   ++L Y+   +N+   ++ +     L  L Y +   N LT   +  +
Sbjct: 73  SNNITTL--DLSQNTNLTYLACDSNKLT-NLDVTP---LTKLTYLNCDTNKLT---KLDV 123

Query: 247 SNATNLQGLEINRNLFSGKVSINFSRLQNLSRLNLGENNLGTGTTNDLDFITLLTNCTKL 306
           S    L  L   RN  +    I+ S    L+ L+   N   T           +T  T+L
Sbjct: 124 SQNPLLTYLNCARNTLT---EIDVSHNTQLTELDCHLNKKIT--------KLDVTPQTQL 172

Query: 307 EVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQISDTIPDVIANLVNLNALGVESNQLA 366
             LD   N+   +       L      +   +N I+  +   +   + L  L   SN+L 
Sbjct: 173 TTLDCSFNKITELDVSQNKLL----NRLNCDTNNITK-LD--LNQNIQLTFLDCSSNKLT 225

Query: 367 GTIPLAIGELKSIQILFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSNGNCQN 426
             I   +  L  +     + N L   +  S   L+ LT L     +L  +I  ++ N Q 
Sbjct: 226 -EID--VTPLTQLTYFDCSVNPLT-ELDVS--TLSKLTTLHCIQTDLL-EIDLTH-NTQL 277

Query: 427 LILLTTRKNKLSGIVPRQLLRIITLSVLLDLSDNLLSGHFPTKVGNLKNLVSLDISSNMF 486
           +        K+  +      ++  L    D     ++      +     LV L +++   
Sbjct: 278 IYFQAEGCRKIKELDVTHNTQLYLL----DCQAAGIT---ELDLSQNPKLVYLYLNNTEL 330

Query: 487 SGEIPTTLGGCTSLEYLGMQDNSFTISIPSTLSSLKSITELDLSRNNLSGHIPQYLENLS 546
           + E+   +   T L+ L   +        S +  + ++     +         + L N S
Sbjct: 331 T-ELD--VSHNTKLKSLSCVNAHIQ-DFSS-VGKIPALNNNFEAEGQTITMPKETLTNNS 385

Query: 547 FLLFLN 552
             + ++
Sbjct: 386 LTIAVS 391

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 85.9 bits (213), Expect = 4e-18
 Identities = 61/335 (18%), Positives = 109/335 (32%), Gaps = 44/335 (13%)

Query: 224 NLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINRNLFSGKVSINFSRLQNLSRLNLGE 283
            L  L       +++T      +   T L  L    N  +   +++ S+  NL+ L    
Sbjct: 40  QLATLTSLDCHNSSITDM--TGIEKLTGLTKLICTSNNIT---TLDLSQNTNLTYLACDS 94

Query: 284 NNLGTGTTNDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQISD 343
           N L      +LD     T  TKL  L+  +N+   +       L    T +    N +++
Sbjct: 95  NKL-----TNLDV----TPLTKLTYLNCDTNKLTKLDVSQNPLL----TYLNCARNTLTE 141

Query: 344 TIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSIQILFLNENFLRGTIPSSLGNLTLL 403
                +++   L  L    N+      L +     +  L  + N +       +    LL
Sbjct: 142 I---DVSHNTQLTELDCHLNKK--ITKLDVTPQTQLTTLDCSFNKITE---LDVSQNKLL 193

Query: 404 TQLILEVNNLQGKIPPSNGNCQNLILLTTRKNKLSGIVPRQLLRIITLSVLLDLSDNLLS 463
            +L  + NN+             L  L    NKL+ I    L ++       D S N L+
Sbjct: 194 NRLNCDTNNITK---LDLNQNIQLTFLDCSSNKLTEIDVTPLTQLTYF----DCSVNPLT 246

Query: 464 GHFPTKVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTISIPSTLSSLKS 523
                 V  L  L +L         EI   L   T L Y   +       +   ++    
Sbjct: 247 ---ELDVSTLSKLTTLHCIQTDLL-EID--LTHNTQLIYFQAEGCRKIKELD--VTHNTQ 298

Query: 524 ITELDLSRNNLSGHIPQYLENLSFLLFLNMSYNHF 558
           +  LD     ++  +   L     L++L ++    
Sbjct: 299 LYLLDCQAAGIT-ELD--LSQNPKLVYLYLNNTEL 330

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 84.4 bits (209), Expect = 1e-17
 Identities = 65/438 (14%), Positives = 138/438 (31%), Gaps = 60/438 (13%)

Query: 84  LQNLTLTNNYFLGKILTDLSHCSNLMKFEASNNKLEGEIPVKISNLLMLQILNIAENHLK 143
             +                   + L   +  N+ +  ++   I  L  L  L    N++ 
Sbjct: 20  FASEVAAAFEMQATDTISEEQLATLTSLDCHNSSIT-DMT-GIEKLTGLTKLICTSNNIT 77

Query: 144 GQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVAYNQFSGMIPPIYNISSL 203
                 +   + L  +    N+L   +   ++ +  L   N   N+ + +   +     L
Sbjct: 78  TL---DLSQNTNLTYLACDSNKL-TNLD--VTPLTKLTYLNCDTNKLTKL--DVSQNPLL 129

Query: 204 QYIFIHTNRFHGSVPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINRNLFS 263
            Y+    N     + +    +   L       N     L   ++  T L  L+ + N  +
Sbjct: 130 TYLNCARNTLT-EIDVS---HNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKIT 183

Query: 264 GKVSINFSRLQNLSRLNLGENNLGTGTTNDLDFITLLTNCTKLEVLDLHSNRFGGVLPFS 323
               ++ S+ + L+RLN   NN+       LD         +L  LD  SN+   +    
Sbjct: 184 ---ELDVSQNKLLNRLNCDTNNI-----TKLDL----NQNIQLTFLDCSSNKLTEIDVTP 231

Query: 324 LANLSTTMTEIAIGSNQISDTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSIQILF 383
           L  L    T      N ++  +   ++ L  L  L      L   I L      + Q+++
Sbjct: 232 LTQL----TYFDCSVNPLT-ELD--VSTLSKLTTLHCIQTDLL-EIDL----THNTQLIY 279

Query: 384 LNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSNGNCQNLILLTTRKNKLSGIVPR 443
                 R      + + T L  L  +   +  ++  S      L+ L     +L+ +   
Sbjct: 280 FQAEGCRKIKELDVTHNTQLYLLDCQAAGIT-ELDLS--QNPKLVYLYLNNTELTELDVS 336

Query: 444 QLLRIITLSVLLDLSDNLLSGHFPTKVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYL 503
              ++ +    L   +  +     + VG +  L +   +                ++   
Sbjct: 337 HNTKLKS----LSCVNAHIQD--FSSVGKIPALNNNFEAEGQT-----------ITMPKE 379

Query: 504 GMQDNSFTISIPSTLSSL 521
            + +NS TI++   L   
Sbjct: 380 TLTNNSLTIAVSPDLLDQ 397

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 83.6 bits (207), Expect = 2e-17
 Identities = 73/414 (17%), Positives = 133/414 (32%), Gaps = 52/414 (12%)

Query: 54  VGNLNFLRSINLPNNSFRGKIPHEVGNLFRLQNLTLTNNYFLGKILTDLSHCSNLMKFEA 113
              L  L S++  N+S    +   +  L  L  L  T+N  +  +  DLS  +NL     
Sbjct: 38  EEQLATLTSLDCHNSSIT-DMT-GIEKLTGLTKLICTSNN-ITTL--DLSQNTNLTYLAC 92

Query: 114 SNNKLEGEIPVKISNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPST 173
            +NKL     + ++ L  L  LN   N L       +     L  ++   N L       
Sbjct: 93  DSNKLTN---LDVTPLTKLTYLNCDTNKLT---KLDVSQNPLLTYLNCARNTL---TEID 143

Query: 174 ISHVRNLISFNVAYNQFSGMIPPIYNISSLQYIFIHTNRFHGSVPLDNGVNLPNLRYFSI 233
           +SH   L   +   N+       +   + L  +    N+    + +        L   + 
Sbjct: 144 VSHNTQLTELDCHLNKKIT-KLDVTPQTQLTTLDCSFNKIT-ELDVS---QNKLLNRLNC 198

Query: 234 SGNNLTGSLQDSLSNATNLQGLEINRNLFSGKVSINFSRLQNLSRLNLGENNLGTGTTND 293
             NN+T  L   L+    L  L+ + N  +    I+ + L  L+  +   N L      +
Sbjct: 199 DTNNIT-KL--DLNQNIQLTFLDCSSNKLT---EIDVTPLTQLTYFDCSVNPL-----TE 247

Query: 294 LDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQISDTIPDVIANLV 353
           LD     +  +KL  L         +       L          +          + +  
Sbjct: 248 LDV----STLSKLTTLHCIQTDLLEIDLTHNTQLIY------FQAEGCRKIKELDVTHNT 297

Query: 354 NLNALGVESNQLAGTIPLAIGELKSIQILFLNENFLRGTIPSSLGNLTLLTQLILEVNNL 413
            L  L  ++  +     L + +   +  L+LN   L   +   + + T L  L     ++
Sbjct: 298 QLYLLDCQAAGIT---ELDLSQNPKLVYLYLNNTELT-ELD--VSHNTKLKSLSCVNAHI 351

Query: 414 QGKIPPSNGNCQNLILLTTRKNKLSGI----VPRQLLRIITLSVLLDLSDNLLS 463
           Q     S G    L      + +   +    +    L I     LLD   N ++
Sbjct: 352 QD--FSSVGKIPALNNNFEAEGQTITMPKETLTNNSLTIAVSPDLLDQFGNPMN 403

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 80.5 bits (199), Expect = 3e-16
 Identities = 63/364 (17%), Positives = 115/364 (31%), Gaps = 48/364 (13%)

Query: 196 PIYNISSLQYIFIHTNRFHGSVPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGL 255
               +++L  +  H +       +     L  L     + NN+T      LS  TNL  L
Sbjct: 37  SEEQLATLTSLDCHNSSITD---MTGIEKLTGLTKLICTSNNIT---TLDLSQNTNLTYL 90

Query: 256 EINRNLFSGKVSINFSRLQNLSRLNLGENNLGTGTTNDLDFITLLTNCTKLEVLDLHSNR 315
             + N  +   +++ + L  L+ LN   N L             ++    L  L+   N 
Sbjct: 91  ACDSNKLT---NLDVTPLTKLTYLNCDTNKLTKLD---------VSQNPLLTYLNCARNT 138

Query: 316 FGGVLPFSLANLSTTMTEIAIGSNQISDTIPDVIANLVNLNALGVESNQLAGTIPLAIGE 375
              +       L    TE+    N+    +   +     L  L    N++     L + +
Sbjct: 139 LTEIDVSHNTQL----TELDCHLNKKITKLD--VTPQTQLTTLDCSFNKITE---LDVSQ 189

Query: 376 LKSIQILFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSNGNCQNLILLTTRKN 435
            K +  L  + N +   +   L     LT L    N L  +I  +      L       N
Sbjct: 190 NKLLNRLNCDTNNIT-KLD--LNQNIQLTFLDCSSNKLT-EIDVTP--LTQLTYFDCSVN 243

Query: 436 KLSGIVPRQLLRIITLSVLLDLSDNLLSGHFPTKVGNLKNLVSLDISSNMFSGEIPTTLG 495
            L+ +    L ++ TL          L       + +   L+           E+   + 
Sbjct: 244 PLTELDVSTLSKLTTL----HCIQTDLLE---IDLTHNTQLIYFQAEGCRKIKELD--VT 294

Query: 496 GCTSLEYLGMQDNSFTISIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLLFLNMSY 555
             T L  L  Q    T  +   LS    +  L L+   L+  +   + + + L  L+   
Sbjct: 295 HNTQLYLLDCQAAGIT-ELD--LSQNPKLVYLYLNNTELT-ELD--VSHNTKLKSLSCVN 348

Query: 556 NHFE 559
            H +
Sbjct: 349 AHIQ 352

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 77.4 bits (191), Expect = 3e-15
 Identities = 61/421 (14%), Positives = 143/421 (33%), Gaps = 52/421 (12%)

Query: 34  QRVTGLDLRHQSVGGVLSPFVGNLNFLRSINLPNNSFRGKIPHEVGNLFRLQNLTLTNNY 93
             +T LD  + S+  +    +  L  L  +   +N+       ++     L  L   +N 
Sbjct: 42  ATLTSLDCHNSSITDM--TGIEKLTGLTKLICTSNNITTL---DLSQNTNLTYLACDSNK 96

Query: 94  FLGKILTDLSHCSNLMKFEASNNKLEGEIPVKISNLLMLQILNIAENHLKGQLPASIGNL 153
                  D++  + L       NKL     + +S   +L  LN A N L       + + 
Sbjct: 97  LTN---LDVTPLTKLTYLNCDTNKLT---KLDVSQNPLLTYLNCARNTLT---EIDVSHN 147

Query: 154 SALQEIDVRGNRLGGRIPSTISHVRNLISFNVAYNQFSGMIPPIYNISSLQYIFIHTNRF 213
           + L E+D   N+        ++    L + + ++N+ + +   +     L  +   TN  
Sbjct: 148 TQLTELDCHLNKKIT--KLDVTPQTQLTTLDCSFNKITEL--DVSQNKLLNRLNCDTNNI 203

Query: 214 HGSVPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINRNLFSGKVSINFSRL 273
              + L+       L +   S N LT      ++  T L   + + N  +    ++ S L
Sbjct: 204 T-KLDLNQ---NIQLTFLDCSSNKLTEI---DVTPLTQLTYFDCSVNPLT---ELDVSTL 253

Query: 274 QNLSRLNLGENNLGT--------------GTTNDLDFITLLTNCTKLEVLDLHSNRFGGV 319
             L+ L+  + +L                     +  + + T+ T+L +LD  +     +
Sbjct: 254 SKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDV-THNTQLYLLDCQAAGITEL 312

Query: 320 LPFSLANLSTTMTEIAIGSNQISDTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSI 379
                  L      + + + +++  +   +++   L +L   +  +      ++G++ ++
Sbjct: 313 DLSQNPKL----VYLYLNNTELT-ELD--VSHNTKLKSLSCVNAHIQ-DFS-SVGKIPAL 363

Query: 380 QILFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSNGNCQNLILLTTRKNKLSG 439
              F  E         +L N +L   +  ++ +  G           +    T       
Sbjct: 364 NNNFEAEGQTITMPKETLTNNSLTIAVSPDLLDQFGNPMNIEPGDGGVYDQATNTITWEN 423

Query: 440 I 440
           +
Sbjct: 424 L 424

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 75.9 bits (187), Expect = 7e-15
 Identities = 54/331 (16%), Positives = 102/331 (30%), Gaps = 41/331 (12%)

Query: 226 PNLRYFSISGNNLTGSLQDSLSNATNLQGLEINRNLFSGKVSINFSRLQNLSRLNLGENN 285
            N      +   +  +   S      L  L+ + +  +        +L  L++L    NN
Sbjct: 18  DNFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITD--MTGIEKLTGLTKLICTSNN 75

Query: 286 LGTGTTNDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQISDTI 345
           +       LD     +  T L  L   SN+   +    L  L    T +   +N+++   
Sbjct: 76  I-----TTLDL----SQNTNLTYLACDSNKLTNLDVTPLTKL----TYLNCDTNKLTK-- 120

Query: 346 PDVIANLVNLNALGVESNQLAGTIPLAIGELKSIQILFLNENFLRGTIPSSLGNLTLLTQ 405
              ++    L  L    N L     + +     +  L  + N         +   T LT 
Sbjct: 121 -LDVSQNPLLTYLNCARNTLT---EIDVSHNTQLTELDCHLNKK--ITKLDVTPQTQLTT 174

Query: 406 LILEVNNLQGKIPPSNGNCQNLILLTTRKNKLSGIVPRQLLRIITLSVLLDLSDNLLSGH 465
           L    N +  ++  S    + L  L    N ++ +   Q +++      LD S N L+  
Sbjct: 175 LDCSFNKIT-ELDVS--QNKLLNRLNCDTNNITKLDLNQNIQLTF----LDCSSNKLT-E 226

Query: 466 FPTKVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTISIPSTLSSLKSIT 525
               V  L  L   D S N  + E+   +   + L  L          I   L+    + 
Sbjct: 227 ID--VTPLTQLTYFDCSVNPLT-ELD--VSTLSKLTTLHCIQTDLL-EID--LTHNTQLI 278

Query: 526 ELDLSRNNLSGHIPQYLENLSFLLFLNMSYN 556
                       +   + + + L  L+    
Sbjct: 279 YFQAEGCRKIKELD--VTHNTQLYLLDCQAA 307

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 85.1 bits (211), Expect = 2e-18
 Identities = 60/240 (25%), Positives = 102/240 (42%), Gaps = 9/240 (3%)

Query: 325 ANLSTTMTEIAIGSNQISDTIPDVIANLVNLNALGVESNQLA--GTIPLAIGELKSIQIL 382
             + ++ T + + SN++      V   L  L  L + SN L+  G    +     S++ L
Sbjct: 24  TGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYL 83

Query: 383 FLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSN--GNCQNLILLTTRKNKLSGI 440
            L+ N +  T+ S+   L  L  L  + +NL+ ++   +   + +NLI L          
Sbjct: 84  DLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLK-QMSEFSVFLSLRNLIYLDISHTHTRVA 141

Query: 441 VPRQLLRIITLSVLLDLSDNLLSGHFPTKV-GNLKNLVSLDISSNMFSGEIPTTLGGCTS 499
                  + +L VL  ++ N    +F   +   L+NL  LD+S        PT     +S
Sbjct: 142 FNGIFNGLSSLEVL-KMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSS 200

Query: 500 LEYLGMQDNSFTISIPSTLSSLKSITELDLSRNNLSGHIPQYLENL-SFLLFLNMSYNHF 558
           L+ L M  N+F          L S+  LD S N++     Q L++  S L FLN++ N F
Sbjct: 201 LQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 260

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 79.3 bits (196), Expect = 2e-16
 Identities = 41/234 (17%), Positives = 84/234 (35%), Gaps = 13/234 (5%)

Query: 114 SNNKLEGEIPVKISNLLMLQILNIAENHLKGQ--LPASIGNLSALQEIDVRGNRLGGRIP 171
            +NKL+         L  L  L+++ N L  +     S    ++L+ +D+  N +   + 
Sbjct: 36  ESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMS 94

Query: 172 STISHVRNLISFNVAYNQFSGMIPP--IYNISSLQYIFIHTNRFHGSVPLDNGVNLPNLR 229
           S    +  L   +  ++    M       ++ +L Y+ I                L +L 
Sbjct: 95  SNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR-VAFNGIFNGLSSLE 153

Query: 230 YFSISGNNLTGSLQ-DSLSNATNLQGLEINRNLFSGKVSINFSRLQNLSRLNLGENNLGT 288
              ++GN+   +   D  +   NL  L++++          F+ L +L  LN+  NN  +
Sbjct: 154 VLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFS 213

Query: 289 GTTNDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQIS 342
             T              L+VLD   N         L +  +++  + +  N  +
Sbjct: 214 LDTF------PYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 76.2 bits (188), Expect = 2e-15
 Identities = 41/260 (15%), Positives = 81/260 (31%), Gaps = 35/260 (13%)

Query: 132 LQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGR--IPSTISHVRNLISFNVAYNQ 189
              L +  N L+         L+ L ++ +  N L  +     +     +L   ++++N 
Sbjct: 30  ATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG 89

Query: 190 FSGMIPPIYNISSLQYIFIHTNRFHGSVPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNA 249
              M      +  L+++    +           ++L NL Y  IS  +            
Sbjct: 90  VITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR---------- 139

Query: 250 TNLQGLEINRNLFSGKVSINFSRLQNLSRLNLGENNLGTGTTNDLDFITLLTNCTKLEVL 309
                      +F+G        L +L  L +  N+       D     + T    L  L
Sbjct: 140 ------VAFNGIFNG--------LSSLEVLKMAGNSFQENFLPD-----IFTELRNLTFL 180

Query: 310 DLHSNRFGGVLPFSLANLSTTMTEIAIGSNQISDTIPDVIANLVNLNALGVESNQLAGTI 369
           DL   +   + P +  +L +++  + +  N            L +L  L    N +  T 
Sbjct: 181 DLSQCQLEQLSPTAFNSL-SSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM-TS 238

Query: 370 PLAI--GELKSIQILFLNEN 387
                     S+  L L +N
Sbjct: 239 KKQELQHFPSSLAFLNLTQN 258

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 62.7 bits (153), Expect = 5e-11
 Identities = 38/195 (19%), Positives = 63/195 (32%), Gaps = 30/195 (15%)

Query: 368 TIPLAIGELKSIQILFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSNGNCQNL 427
           ++P  I    S   L L  N L+         LT LT+L L  N L       + +    
Sbjct: 21  SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLS-FKGCCSQSDFGT 77

Query: 428 ILLTTRKNKLSGIVPRQLLRIITLSVLLDLSDNLLSGHFPTKVGNLKNLVSLDISSNMFS 487
             L                        LDLS N +     +    L+ L  LD   +   
Sbjct: 78  TSLKY----------------------LDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLK 114

Query: 488 GEIP--TTLGGCTSLEYLGMQDNSFTISIPSTLSSLKSITELDLSRNNLSGHIPQY-LEN 544
            ++   +      +L YL +      ++     + L S+  L ++ N+   +        
Sbjct: 115 -QMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTE 173

Query: 545 LSFLLFLNMSYNHFE 559
           L  L FL++S    E
Sbjct: 174 LRNLTFLDLSQCQLE 188

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 45.0 bits (107), Expect = 4e-05
 Identities = 31/140 (22%), Positives = 59/140 (42%), Gaps = 6/140 (4%)

Query: 56  NLNFLRSINLPNNSFRGKIPHEV-GNLFRLQNLTLTNNYFLGKILTD-LSHCSNLMKFEA 113
           +L  L  +++ +   R    + +   L  L+ L +  N F    L D  +   NL   + 
Sbjct: 124 SLRNLIYLDISHTHTR-VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDL 182

Query: 114 SNNKLEGEIPVKI-SNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPS 172
           S  +LE ++     ++L  LQ+LN++ N+           L++LQ +D   N +      
Sbjct: 183 SQCQLE-QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQ 241

Query: 173 TISHV-RNLISFNVAYNQFS 191
            + H   +L   N+  N F+
Sbjct: 242 ELQHFPSSLAFLNLTQNDFA 261

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 84.3 bits (209), Expect = 6e-18
 Identities = 52/308 (16%), Positives = 105/308 (34%), Gaps = 27/308 (8%)

Query: 114 SNNKLEGEIPVKISNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPST 173
           S+  LE ++P  +       +L++  N +         NL  L  + +  N++    P  
Sbjct: 39  SDLGLE-KVPKDLPPDT--ALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGA 95

Query: 174 ISHVRNLISFNVAYNQFSGMIPPIYNISSLQYIFIHTNRFHGSVPLDNGVNLPNLRYFSI 233
            + +  L    ++ NQ   +   +    +LQ + +H N     V       L  +    +
Sbjct: 96  FAPLVKLERLYLSKNQLKELPEKMP--KTLQELRVHENEIT-KVRKSVFNGLNQMIVVEL 152

Query: 234 SGNNLTGSL--QDSLSNATNLQGLEINRNLFSGKVSINFSRLQNLSRLNLGENNLGTGTT 291
             N L  S     +      L  + I     +   +I      +L+ L+L  N +     
Sbjct: 153 GTNPLKSSGIENGAFQGMKKLSYIRIADTNIT---TIPQGLPPSLTELHLDGNKITKVDA 209

Query: 292 NDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQISDTIPDVIAN 351
             L           L  L L  N    V   SLAN    + E+ + +N++   +P  +A+
Sbjct: 210 ASLK------GLNNLAKLGLSFNSISAVDNGSLANT-PHLRELHLNNNKLV-KVPGGLAD 261

Query: 352 LVNLNALGVESNQL------AGTIPLAIGELKSIQILFLNENFLRGTI--PSSLGNLTLL 403
              +  + + +N +          P    +  S   + L  N ++     PS+   + + 
Sbjct: 262 HKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVR 321

Query: 404 TQLILEVN 411
             + L   
Sbjct: 322 AAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 84.3 bits (209), Expect = 6e-18
 Identities = 54/317 (17%), Positives = 107/317 (33%), Gaps = 49/317 (15%)

Query: 250 TNLQGLEINRNLFSGKVSINFSRLQNLSRLNLGENNLGTGTTNDLDFITLLTNCTKLEVL 309
            +   L++  N  +     +F  L+NL  L L  N +   +              KLE L
Sbjct: 52  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPG------AFAPLVKLERL 105

Query: 310 DLHSNRFGGVLPFSLANLSTTMTEIAIGSNQISDTIPDVIANLVNLNALGVESNQLAGTI 369
            L  N+   +       L     E+ +  N+I+     V   L  +  + + +N L  + 
Sbjct: 106 YLSKNQLKELPEKMPKTL----QELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSG 161

Query: 370 --PLAIGELKSIQILFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSNGNCQNL 427
               A   +K +  + + +  +  TIP  L     LT+L L+ N +  K+     + + L
Sbjct: 162 IENGAFQGMKKLSYIRIADTNIT-TIPQGL--PPSLTELHLDGNKIT-KVDA--ASLKGL 215

Query: 428 ILLTTRKNKLSGIVPRQLLRIITLSVLLDLSDNLLSGHFPTKVGNLKNLVSLDISSNMFS 487
             L                        L LS N +S      + N  +L  L +++N   
Sbjct: 216 NNLAK----------------------LGLSFNSISAVDNGSLANTPHLRELHLNNNKLV 253

Query: 488 GEIPTTLGGCTSLEYLGMQDNSFT------ISIPSTLSSLKSITELDLSRNNLSGH-IPQ 540
            ++P  L     ++ + + +N+ +         P   +   S + + L  N +    I  
Sbjct: 254 -KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQP 312

Query: 541 YL-ENLSFLLFLNMSYN 556
                +     + +   
Sbjct: 313 STFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 83.1 bits (206), Expect = 1e-17
 Identities = 55/256 (21%), Positives = 101/256 (39%), Gaps = 35/256 (13%)

Query: 306 LEVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQISDTIPDVIANLVNLNALGVESNQL 365
             +LDL +N+   +      NL   +  + + +N+IS   P   A LV L  L +  NQL
Sbjct: 54  TALLDLQNNKITEIKDGDFKNL-KNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQL 112

Query: 366 AGTIPLAIGELKSIQILFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQ-GKIPPSNGNC 424
                L     K++Q L ++EN +     S    L  +  + L  N L+   I    G  
Sbjct: 113 KE---LPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIEN--GAF 167

Query: 425 QNLILLTTRKNKLSGIVPRQLLRIITLSVLLDLSDNLLSGHFPTKVGNLKNLVSLDISSN 484
           Q +  L+                       + ++D  ++   P   G   +L  L +  N
Sbjct: 168 QGMKKLSY----------------------IRIADTNIT-TIPQ--GLPPSLTELHLDGN 202

Query: 485 MFSGEIPT-TLGGCTSLEYLGMQDNSFTISIPSTLSSLKSITELDLSRNNLSGHIPQYLE 543
             + ++   +L G  +L  LG+  NS +     +L++   + EL L+ N L   +P  L 
Sbjct: 203 KIT-KVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLA 260

Query: 544 NLSFLLFLNMSYNHFE 559
           +  ++  + +  N+  
Sbjct: 261 DHKYIQVVYLHNNNIS 276

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 78.9 bits (195), Expect = 3e-16
 Identities = 57/259 (22%), Positives = 99/259 (38%), Gaps = 11/259 (4%)

Query: 60  LRSINLPNNSFRGKIPHEVGNLFRLQNLTLTNNYFLGKILTD-LSHCSNLMKFEASNNKL 118
              ++L NN        +  NL  L  L L NN  + KI     +    L +   S N+L
Sbjct: 54  TALLDLQNNKITEIKDGDFKNLKNLHTLILINNK-ISKISPGAFAPLVKLERLYLSKNQL 112

Query: 119 EGEIPVKISNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRI--PSTISH 176
           + E+P K+     LQ L + EN +     +    L+ +  +++  N L            
Sbjct: 113 K-ELPEKM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQG 169

Query: 177 VRNLISFNVAYNQFSGMIPPIYNISSLQYIFIHTNRFHGSVPLDNGVNLPNLRYFSISGN 236
           ++ L    +A    + +  P     SL  + +  N+    V   +   L NL    +S N
Sbjct: 170 MKKLSYIRIADTNITTI--PQGLPPSLTELHLDGNKIT-KVDAASLKGLNNLAKLGLSFN 226

Query: 237 NLTGSLQDSLSNATNLQGLEINRNLFSGKVSINFSRLQNLSRLNLGENNLGTGTTNDLDF 296
           +++     SL+N  +L+ L +N N    KV    +  + +  + L  NN+    +ND   
Sbjct: 227 SISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCP 285

Query: 297 ITLLTNCTKLEVLDLHSNR 315
               T       + L SN 
Sbjct: 286 PGYNTKKASYSGVSLFSNP 304

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 69.6 bits (171), Expect = 4e-13
 Identities = 49/234 (20%), Positives = 92/234 (39%), Gaps = 33/234 (14%)

Query: 325 ANLSTTMTEIAIGSNQISDTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSIQILFL 384
            +L      + + +N+I++       NL NL+ L + +N+++   P A   L  ++ L+L
Sbjct: 48  KDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL 107

Query: 385 NENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSNGNCQNLILLTTRKNKLSGIVPRQ 444
           ++N L+  +P  +     L +L +  N +  K+         L  +              
Sbjct: 108 SKNQLK-ELPEKM--PKTLQELRVHENEIT-KVRK--SVFNGLNQMIV------------ 149

Query: 445 LLRIITLSVLLDLSDNLL-SGHFPTKV-GNLKNLVSLDISSNMFSGEIPTTLGGCTSLEY 502
                     ++L  N L S          +K L  + I+    +  IP  L    SL  
Sbjct: 150 ----------VELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGL--PPSLTE 196

Query: 503 LGMQDNSFTISIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLLFLNMSYN 556
           L +  N  T    ++L  L ++ +L LS N++S      L N   L  L+++ N
Sbjct: 197 LHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNN 250

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 83.9 bits (208), Expect = 7e-18
 Identities = 56/238 (23%), Positives = 102/238 (42%), Gaps = 13/238 (5%)

Query: 325 ANLSTTMTEIAIGSNQISDTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSIQILFL 384
             +S   T + + +N IS+   D    L +L AL + +N+++     A   L+ +Q L++
Sbjct: 50  KEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI 109

Query: 385 NENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSN-GNCQNLILLTTRKNKL-SGIVP 442
           ++N L   IP +L   + L +L +  N ++ K+P       +N+  +    N L +    
Sbjct: 110 SKNHLV-EIPPNL--PSSLVELRIHDNRIR-KVPKGVFSGLRNMNCIEMGGNPLENSGFE 165

Query: 443 RQLLRIITLSVLLDLSDNLLSGHFPTKVGNLKNLVSLDISSNMFSGEIPT-TLGGCTSLE 501
                 + L+ L  +S+  L+   P      + L  L +  N     I    L   + L 
Sbjct: 166 PGAFDGLKLNYL-RISEAKLT-GIPK--DLPETLNELHLDHNKIQ-AIELEDLLRYSKLY 220

Query: 502 YLGMQDNSFTISIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLLFLNMSYNHFE 559
            LG+  N   +    +LS L ++ EL L  N LS  +P  L +L  L  + +  N+  
Sbjct: 221 RLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNIT 277

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 76.6 bits (189), Expect = 2e-15
 Identities = 61/341 (17%), Positives = 108/341 (31%), Gaps = 55/341 (16%)

Query: 227 NLRYFSISGNNLTGSLQDSLSNATNLQGLEINRNLFSGKVSINFSRLQNLSRLNLGENNL 286
           +LR    S   L  ++   +S   +   L++  N  S     +F  LQ+L  L L  N +
Sbjct: 34  HLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKI 90

Query: 287 GTGTTNDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQISDTIP 346
                         +   KL+ L +  N    + P   ++L     E+ I  N+I     
Sbjct: 91  SKIHEK------AFSPLRKLQKLYISKNHLVEIPPNLPSSL----VELRIHDNRIRKVPK 140

Query: 347 DVIANLVNLNALGVESNQLAGT-IPLAIGELKSIQILFLNENFLRGTIPSSLGNLTLLTQ 405
            V + L N+N + +  N L  +       +   +  L ++E  L   IP  L     L +
Sbjct: 141 GVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLT-GIPKDL--PETLNE 197

Query: 406 LILEVNNLQGKIPPSN-GNCQNLILLTTRKNKLSGIVPRQLLRIITLSVLLDLSDNLLSG 464
           L L+ N +Q  I   +      L  L    N++  I    L                   
Sbjct: 198 LHLDHNKIQ-AIELEDLLRYSKLYRLGLGHNQIRMIENGSLS------------------ 238

Query: 465 HFPTKVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTISIPST------- 517
                   L  L  L + +N  S  +P  L     L+ + +  N+ T  +          
Sbjct: 239 -------FLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNIT-KVGVNDFCPVGF 289

Query: 518 LSSLKSITELDLSRNNLS-GHIPQYL-ENLSFLLFLNMSYN 556
                    + L  N +    +       ++  L +     
Sbjct: 290 GVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 74.7 bits (184), Expect = 9e-15
 Identities = 56/259 (21%), Positives = 92/259 (35%), Gaps = 12/259 (4%)

Query: 60  LRSINLPNNSFRGKIPHEVGNLFRLQNLTLTNNYFLGKILTD-LSHCSNLMKFEASNNKL 118
              ++L NN        +   L  L  L L NN  + KI     S    L K   S N L
Sbjct: 56  TTLLDLQNNDISELRKDDFKGLQHLYALVLVNNK-ISKIHEKAFSPLRKLQKLYISKNHL 114

Query: 119 EGEIPVKISNLLM-LQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLG-GRIPSTISH 176
             EIP    NL   L  L I +N ++         L  +  I++ GN L           
Sbjct: 115 V-EIP---PNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFD 170

Query: 177 VRNLISFNVAYNQFSGMIPPIYNISSLQYIFIHTNRFHGSVPLDNGVNLPNLRYFSISGN 236
              L    ++  + +G+  P     +L  + +  N+   ++ L++ +    L    +  N
Sbjct: 171 GLKLNYLRISEAKLTGI--PKDLPETLNELHLDHNKIQ-AIELEDLLRYSKLYRLGLGHN 227

Query: 237 NLTGSLQDSLSNATNLQGLEINRNLFSGKVSINFSRLQNLSRLNLGENNLGTGTTNDLDF 296
            +      SLS    L+ L ++ N  S +V      L+ L  + L  NN+     ND   
Sbjct: 228 QIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCP 286

Query: 297 ITLLTNCTKLEVLDLHSNR 315
           +           + L +N 
Sbjct: 287 VGFGVKRAYYNGISLFNNP 305

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 73.9 bits (182), Expect = 1e-14
 Identities = 50/300 (16%), Positives = 110/300 (36%), Gaps = 31/300 (10%)

Query: 132 LQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVAYNQFS 191
           L+++  ++  LK  +P  I        +D++ N +          +++L +  +  N+ S
Sbjct: 35  LRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKIS 91

Query: 192 GMIPP--IYNISSLQYIFIHTNRFHGSVPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNA 249
             I       +  LQ ++I  N       +   +   +L    I  N +    +   S  
Sbjct: 92  -KIHEKAFSPLRKLQKLYISKNHLVE---IPPNL-PSSLVELRIHDNRIRKVPKGVFSGL 146

Query: 250 TNLQGLEINRN-LFSGKVSINFSRLQNLSRLNLGENNLGTGTTNDLDFITLLTNCTKLEV 308
            N+  +E+  N L +            L+ L + E  L     +             L  
Sbjct: 147 RNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLP---------ETLNE 197

Query: 309 LDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQISDTIPDVIANLVNLNALGVESNQLAGT 368
           L L  N+   +    L    + +  + +G NQI       ++ L  L  L +++N+L+  
Sbjct: 198 LHLDHNKIQAIELEDLLRY-SKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-R 255

Query: 369 IPLAIGELKSIQILFLNENFLRGTIPSS-------LGNLTLLTQLILEVNNLQ-GKIPPS 420
           +P  + +LK +Q+++L+ N +   +  +                + L  N +   ++ P+
Sbjct: 256 VPAGLPDLKLLQVVYLHTNNIT-KVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPA 314

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 83.5 bits (206), Expect = 5e-17
 Identities = 65/344 (18%), Positives = 118/344 (34%), Gaps = 84/344 (24%)

Query: 218 PLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINRNLFSGKVS-INFSRLQNL 276
           P++N  +L    ++    N ++G+  D  S     +   +     +  VS +    +   
Sbjct: 6   PINNNFSLSQNSFY----NTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQF 61

Query: 277 SRLNLGENNLGTGTTNDL-DFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSTTMTEIA 335
           S L L   NL +     L D +       ++ VL++  N     LP   A+L      + 
Sbjct: 62  SELQLNRLNLSS-----LPDNL-----PPQITVLEITQNALI-SLPELPASL----EYLD 106

Query: 336 IGSNQISDTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSIQILFLNENFLRGTIPS 395
              N++S T+P++ A+L +L+   V++NQL   +P     L+    +  + N L   +P 
Sbjct: 107 ACDNRLS-TLPELPASLKHLD---VDNNQLT-MLPELPALLEY---INADNNQLT-MLPE 157

Query: 396 SLGNLTLLTQLILEVNNLQGKIPPSNGNCQNLILLTTRKNKLSGIVPRQLLRIITLSVLL 455
              +L     L +  N L   +P    + + L                            
Sbjct: 158 LPTSLE---VLSVRNNQLT-FLPELPESLEAL---------------------------- 185

Query: 456 DLSDNLLSGHFPTKVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTISIP 515
           D+S NLL    P       +    +I                    +   ++N  T  IP
Sbjct: 186 DVSTNLLE-SLPAVPVRNHHSEETEI--------------------FFRCRENRIT-HIP 223

Query: 516 STLSSLKSITELDLSRNNLSGHIPQYLENLSFLLFLNMSYNHFE 559
             + SL     + L  N LS  I + L   +     +    +F 
Sbjct: 224 ENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFS 267

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 80.0 bits (197), Expect = 5e-16
 Identities = 61/435 (14%), Positives = 122/435 (28%), Gaps = 72/435 (16%)

Query: 106 SNLMKFEASNN--KLEGEIPVKISNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRG 163
            +L +    N       +            +     N     L   +  ++   E+ +  
Sbjct: 11  FSLSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECL--INQFSELQLNR 68

Query: 164 NRLGGRIPSTISHVRNLISFNVAYNQFSGMIPPIYNISSLQYIFIHTNRFHGSVPLDNGV 223
             L   +P  +     +    +  N     +P                            
Sbjct: 69  LNLS-SLPDNLP--PQITVLEITQNALI-SLPE--------------------------- 97

Query: 224 NLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINRNLFSGKVSINFSRLQNLSRLNLGE 283
              +L Y     N L+ +L +  ++   L+ L+++ N  +    +       L  +N   
Sbjct: 98  LPASLEYLDACDNRLS-TLPELPAS---LKHLDVDNNQLT---MLP-ELPALLEYINADN 149

Query: 284 NNLGTGTTNDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQISD 343
           N L            L    T LEVL + +N+    LP    +L      + + +N +  
Sbjct: 150 NQLTM----------LPELPTSLEVLSVRNNQLT-FLPELPESL----EALDVSTNLLE- 193

Query: 344 TIPDVIANLVNL----NALGVESNQLAGTIPLAIGELKSIQILFLNENFLRGTIPSSLGN 399
           ++P V     +            N++   IP  I  L     + L +N L   I  SL  
Sbjct: 194 SLPAVPVRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQ 252

Query: 400 LTLLTQLILEVNNLQGKIPPSNGNCQNLILLTTRKNKLSGIVPRQLLRIITLSVLLDLSD 459
            T           +   +     N  +  L               + +I           
Sbjct: 253 QTAQPDYHG--PRIYFSMSDGQQNTLHRPLADAVTAWFPENKQSDVSQI-----WHAFEH 305

Query: 460 NLLSGHFPTKVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTISIPSTLS 519
              +  F   +  L + VS   +S  F  ++   L   ++   L  Q  +       +  
Sbjct: 306 EEHANTFSAFLDRLSDTVSARNTSG-FREQVAAWLEKLSASAELRQQSFAVAADATESCE 364

Query: 520 SLKSITELDLSRNNL 534
              ++T  +L +  L
Sbjct: 365 DRVALTWNNLRKTLL 379

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 53.1 bits (127), Expect = 2e-07
 Identities = 32/157 (20%), Positives = 52/157 (33%), Gaps = 16/157 (10%)

Query: 60  LRSINLPNNSFRGKIPHEVGNLFRLQNLTLTNNYFLGKILTDLSHC-SNLMKFEASNNKL 118
           L  IN  NN     +P    +L   + L++ NN      LT L     +L   + S N L
Sbjct: 142 LEYINADNNQLT-MLPELPTSL---EVLSVRNNQ-----LTFLPELPESLEALDVSTNLL 192

Query: 119 EGEIPVKISNLLMLQ----ILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTI 174
           E  +P         +         EN +   +P +I +L     I +  N L  RI  ++
Sbjct: 193 E-SLPAVPVRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESL 250

Query: 175 SHVRNLISFNVAYNQFSGMIPPIYNISSLQYIFIHTN 211
           S       ++     FS        +       +   
Sbjct: 251 SQQTAQPDYHGPRIYFSMSDGQQNTLHRPLADAVTAW 287

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 80.2 bits (197), Expect = 6e-16
 Identities = 48/310 (15%), Positives = 98/310 (31%), Gaps = 52/310 (16%)

Query: 246 LSNATNLQGLEINRNLFSGKVSINFSRLQNLSRLNLGENNLGTGTTNDLDFITLLTNCTK 305
                      + +   +   ++  + L ++ ++    +++ +        +  +     
Sbjct: 17  DDAFAETIKDNLKKKSVTD--AVTQNELNSIDQIIANNSDIKS--------VQGIQYLPN 66

Query: 306 LEVLDLHSNRFGGVLPFS-LANLSTTMTEIAIGSNQISDTIPDVIANLVNLNALGVESNQ 364
           +  L L+ N+   + P + L NL      + +  N+I D     + +L  L +L +E N 
Sbjct: 67  VTKLFLNGNKLTDIKPLTNLKNL----GWLFLDENKIKDLSS--LKDLKKLKSLSLEHNG 120

Query: 365 LAGTIPLAIGELKSIQILFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSNGNC 424
           ++    L    L  ++ L+L  N +  T  + L  LT L  L LE N +   I P     
Sbjct: 121 ISDINGLV--HLPQLESLYLGNNKI--TDITVLSRLTKLDTLSLEDNQIS-DIVP----L 171

Query: 425 QNLILLTTRKNKLSGIVPRQLLRIITLSVLLDLSDNLLSGHFPTKVGNLKNLVSLDISSN 484
             L  L                        L LS N +S      +  LKNL  L++ S 
Sbjct: 172 AGLTKLQN----------------------LYLSKNHISDLRA--LAGLKNLDVLELFSQ 207

Query: 485 MFSGEIPTTLGGCTSLEYLGMQDNSFTISIPSTLSSLKSITELDLSRNNLSGHIPQYLEN 544
               +             +   D   ++  P  +S      + ++  +            
Sbjct: 208 ECLNKPINHQSNLVVPNTVKNTDG--SLVTPEIISDDGDYEKPNVKWHLPEFTNEVSFIF 265

Query: 545 LSFLLFLNMS 554
              +      
Sbjct: 266 YQPVTIGKAK 275

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 78.6 bits (193), Expect = 1e-15
 Identities = 56/233 (24%), Positives = 89/233 (38%), Gaps = 19/233 (8%)

Query: 331 MTEIAIGSNQISDTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSIQILFLNENFLR 390
           M E    S  I    PD            ++   +   +     EL SI  +  N + + 
Sbjct: 1   MGETITVSTPIKQIFPD--DAFAETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDI- 55

Query: 391 GTIPSSLGNLTLLTQLILEVNNLQGKIPPSNGNCQNLILLTTRKNKLSGIVPRQLLRIIT 450
                 +  L  +T+L L  N L   I P   N +NL  L   +NK+  +   + L+ + 
Sbjct: 56  -KSVQGIQYLPNVTKLFLNGNKLT-DIKPL-TNLKNLGWLFLDENKIKDLSSLKDLKKLK 112

Query: 451 LSVLLDLSDNLLSGHFPTKVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSF 510
               L L  N +S      + +L  L SL + +N  +    T L   T L+ L ++DN  
Sbjct: 113 S---LSLEHNGISD--INGLVHLPQLESLYLGNNKIT--DITVLSRLTKLDTLSLEDNQ- 164

Query: 511 TISIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLLFLNMSYNHFEGKVP 563
            IS    L+ L  +  L LS+N++S    + L  L  L  L +       K  
Sbjct: 165 -ISDIVPLAGLTKLQNLYLSKNHIS--DLRALAGLKNLDVLELFSQECLNKPI 214

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 75.5 bits (185), Expect = 1e-14
 Identities = 44/254 (17%), Positives = 95/254 (37%), Gaps = 25/254 (9%)

Query: 224 NLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINRNLFSGKVSI-NFSRLQNLSRLNLG 282
                   ++   ++T +   + +   ++  +  N +      S+     L N+++L L 
Sbjct: 19  AFAETIKDNLKKKSVTDA--VTQNELNSIDQIIANNSDIK---SVQGIQYLPNVTKLFLN 73

Query: 283 ENNLGTGTTNDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQIS 342
            N L          I  LTN   L  L L  N+   +    L +L   +  +++  N IS
Sbjct: 74  GNKLTD--------IKPLTNLKNLGWLFLDENKIKDLSS--LKDL-KKLKSLSLEHNGIS 122

Query: 343 DTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSIQILFLNENFLRGTIPSSLGNLTL 402
           D     + +L  L +L + +N++     L+   L  +  L L +N +  +    L  LT 
Sbjct: 123 DING--LVHLPQLESLYLGNNKITDITVLS--RLTKLDTLSLEDNQI--SDIVPLAGLTK 176

Query: 403 LTQLILEVNNLQGKIPPSNGNCQNLILLTTRKNKLSGIVPRQLLRIITLSVLLDLSDNLL 462
           L  L L  N++   +       +NL +L     +           ++  + + +   +L+
Sbjct: 177 LQNLYLSKNHIS-DLRA-LAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLV 234

Query: 463 SGHFPTKVGNLKNL 476
           +    +  G+ +  
Sbjct: 235 TPEIISDDGDYEKP 248

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 66.7 bits (162), Expect = 1e-11
 Identities = 45/270 (16%), Positives = 97/270 (35%), Gaps = 22/270 (8%)

Query: 36  VTGLDLRHQSVGGVLSPFVGNLNFLRSINLPNNSFRGKIPHEVGNLFRLQNLTLTNNYFL 95
               +L+ +SV          LN +  I   N+  +  +   +  L  +  L L  N   
Sbjct: 23  TIKDNLKKKSVTDA--VTQNELNSIDQIIANNSDIK-SVQ-GIQYLPNVTKLFLNGN--- 75

Query: 96  GKI--LTDLSHCSNLMKFEASNNKLEGEIPVKISNLLMLQILNIAENHLKGQLPASIGNL 153
            K+  +  L++  NL       NK++ ++   + +L  L+ L++  N +   +   + +L
Sbjct: 76  -KLTDIKPLTNLKNLGWLFLDENKIK-DLSS-LKDLKKLKSLSLEHNGIS-DING-LVHL 130

Query: 154 SALQEIDVRGNRLGGRIPSTISHVRNLISFNVAYNQFSGMIPPIYNISSLQYIFIHTNRF 213
             L+ + +  N++     + +S +  L + ++  NQ S  I P+  ++ LQ +++  N  
Sbjct: 131 PQLESLYLGNNKI--TDITVLSRLTKLDTLSLEDNQISD-IVPLAGLTKLQNLYLSKNHI 187

Query: 214 HGSVPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINRNLFSGKVSINFSRL 273
                L     L NL    +          +  SN      ++           I  S  
Sbjct: 188 SDLRALAG---LKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEII--SDD 242

Query: 274 QNLSRLNLGENNLGTGTTNDLDFITLLTNC 303
            +  + N+  +           F   +T  
Sbjct: 243 GDYEKPNVKWHLPEFTNEVSFIFYQPVTIG 272

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 75.9 bits (187), Expect = 4e-15
 Identities = 52/287 (18%), Positives = 102/287 (35%), Gaps = 29/287 (10%)

Query: 275 NLSRLNLGENNLGTGTTNDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSTTMTEI 334
            +  L+L  N +   + +DL        C  L+ L L SN    +   S ++L  ++  +
Sbjct: 53  AVKSLDLSNNRITYISNSDLQ------RCVNLQALVLTSNGINTIEEDSFSSL-GSLEHL 105

Query: 335 AIGSNQISDTIPDVIANLVNLNALGVESNQLAGTIPLAI-GELKSIQILFLNENFLRGTI 393
            +  N +S+        L +L  L +  N        ++   L  +QIL +        I
Sbjct: 106 DLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKI 165

Query: 394 PS-SLGNLTLLTQLILEVNNLQGKIPPSN-GNCQNLILLTTRKNKLSGIVPRQLLRIITL 451
                  LT L +L ++ ++LQ    P +  + QN+  L     +   +     + + + 
Sbjct: 166 QRKDFAGLTFLEELEIDASDLQ-SYEPKSLKSIQNVSHLILHMKQHILL-LEIFVDVTSS 223

Query: 452 SVLLDLSDNLLSGHFPTKVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFT 511
              L+L D  L                     +  S     +L    +   + + D S  
Sbjct: 224 VECLELRDTDLDT----------------FHFSELSTGETNSLIKKFTFRNVKITDESLF 267

Query: 512 ISIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLLFLNMSYNHF 558
             +   L+ +  + EL+ SRN L        + L+ L  + +  N +
Sbjct: 268 -QVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPW 313

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 73.6 bits (181), Expect = 2e-14
 Identities = 43/254 (16%), Positives = 91/254 (35%), Gaps = 6/254 (2%)

Query: 114 SNNKLEGEIPVKISNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPST 173
           SNN++       +   + LQ L +  N +      S  +L +L+ +D+  N L     S 
Sbjct: 60  SNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSW 119

Query: 174 ISHVRNLISFNVAYNQFSGMIPPI--YNISSLQYIFIHTNRFHGSVPLDNGVNLPNLRYF 231
              + +L   N+  N +  +       +++ LQ + +        +   +   L  L   
Sbjct: 120 FKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEEL 179

Query: 232 SISGNNLTGSLQDSLSNATNLQGLEINRNLFSGKVSINFSRLQNLSRLNLGENNLGTGTT 291
            I  ++L      SL +  N+  L ++       + I      ++  L L + +L T   
Sbjct: 180 EIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHF 239

Query: 292 NDLDFIT--LLTNCTKLEVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQISDTIPDVI 349
           ++L       L        + +       V+   L N  + + E+    NQ+      + 
Sbjct: 240 SELSTGETNSLIKKFTFRNVKITDESLFQVMK--LLNQISGLLELEFSRNQLKSVPDGIF 297

Query: 350 ANLVNLNALGVESN 363
             L +L  + + +N
Sbjct: 298 DRLTSLQKIWLHTN 311

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 70.1 bits (172), Expect = 4e-13
 Identities = 41/286 (14%), Positives = 96/286 (33%), Gaps = 28/286 (9%)

Query: 132 LQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVAYNQFS 191
           ++ L+++ N +     + +     LQ + +  N +      + S + +L   +++YN  S
Sbjct: 54  VKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS 113

Query: 192 GMIPP--IYNISSLQYIFIHTNRFHGSVPLDNGVNLPNLRYFSISGNNLTGSLQD-SLSN 248
             +       +SSL ++ +  N +          +L  L+   +   +    +Q    + 
Sbjct: 114 -NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAG 172

Query: 249 ATNLQGLEINRNLFSGKVSINFSRLQNLSRLNLGENNLGTGTTNDLDFITLLTNCTKLEV 308
            T L+ LEI+ +        +   +QN+S L L            +D        + +E 
Sbjct: 173 LTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVD------VTSSVEC 226

Query: 309 LDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQISDTIPDVIANLVNLNALGVESNQLAGT 368
           L+L                           +++S    + +        + +    L   
Sbjct: 227 LELRDTDLDT-----------------FHFSELSTGETNSLIKKFTFRNVKITDESLF-Q 268

Query: 369 IPLAIGELKSIQILFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQ 414
           +   + ++  +  L  + N L+         LT L ++ L  N   
Sbjct: 269 VMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWD 314

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 70.1 bits (172), Expect = 4e-13
 Identities = 42/256 (16%), Positives = 82/256 (32%), Gaps = 29/256 (11%)

Query: 303 CTKLEVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQISDTIPDVIANLVNLNALGVES 362
           C +  +    S     + P   + L+  +  + + +N+I+      +   VNL AL + S
Sbjct: 30  CDRNGICKGSSGSLNSI-P---SGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTS 85

Query: 363 NQLAGTIPLAIGELKSIQILFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSNG 422
           N +      +   L S++ L L+ N+L     S    L+ LT L L              
Sbjct: 86  NGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNL-------------- 131

Query: 423 NCQNLILLTTRKNKLSGIVPRQLLRIITLSVLLDLSDNLLSGHFPTKV-GNLKNLVSLDI 481
                       N    +    L   +T   +L + +         K    L  L  L+I
Sbjct: 132 ----------LGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEI 181

Query: 482 SSNMFSGEIPTTLGGCTSLEYLGMQDNSFTISIPSTLSSLKSITELDLSRNNLSGHIPQY 541
            ++      P +L    ++ +L +      + +   +    S+  L+L   +L       
Sbjct: 182 DASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSE 241

Query: 542 LENLSFLLFLNMSYNH 557
           L        +      
Sbjct: 242 LSTGETNSLIKKFTFR 257

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 60.9 bits (148), Expect = 3e-10
 Identities = 47/248 (18%), Positives = 97/248 (39%), Gaps = 25/248 (10%)

Query: 56  NLNFLRSINLPNNSFRGKIPHEV-GNLFRLQNLTLTNNYFLGKILTDLS-----HCSNLM 109
               L+++ L +N     I  +   +L  L++L L+ NY     L++LS       S+L 
Sbjct: 74  RCVNLQALVLTSNGIN-TIEEDSFSSLGSLEHLDLSYNY-----LSNLSSSWFKPLSSLT 127

Query: 110 KFEASNNKLEGEIPVKI-SNLLMLQILNIAENHLKGQLPASI-GNLSALQEIDVRGNRLG 167
                 N  +      + S+L  LQIL +       ++       L+ L+E+++  + L 
Sbjct: 128 FLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQ 187

Query: 168 GRIPSTISHVRNLISFNVAYNQFSGMIPPIY--NISSLQYIFIHTNRFHG-------SVP 218
              P ++  ++N+    +   Q   ++  I+    SS++ + +              +  
Sbjct: 188 SYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGE 246

Query: 219 LDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINRNLFSGKVSINFSRLQNLSR 278
            ++ +     R   I+  +L   +   L+  + L  LE +RN         F RL +L +
Sbjct: 247 TNSLIKKFTFRNVKITDESLF-QVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQK 305

Query: 279 LNLGENNL 286
           + L  N  
Sbjct: 306 IWLHTNPW 313

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 74.6 bits (184), Expect = 5e-15
 Identities = 49/206 (23%), Positives = 76/206 (36%), Gaps = 4/206 (1%)

Query: 353 VNLNALGVESNQLAGTIPLAIGELKSIQILFLNENFLRGTIPSSLGNLTLLTQLILEVNN 412
                + +  N+++     +    +++ IL+L+ N L     ++   L LL QL L  N 
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91

Query: 413 LQGKIPPSN-GNCQNLILLTTRKNKLSGIVPRQLLRIITLSVLLDLSDNLLSGHFPTKV- 470
               + P+       L  L   +  L  + P     +  L  L  L DN L    P    
Sbjct: 92  QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYL-YLQDNALQ-ALPDDTF 149

Query: 471 GNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTISIPSTLSSLKSITELDLS 530
            +L NL  L +  N  S        G  SL+ L +  N      P     L  +  L L 
Sbjct: 150 RDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLF 209

Query: 531 RNNLSGHIPQYLENLSFLLFLNMSYN 556
            NNLS    + L  L  L +L ++ N
Sbjct: 210 ANNLSALPTEALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 71.2 bits (175), Expect = 7e-14
 Identities = 45/225 (20%), Positives = 81/225 (36%), Gaps = 20/225 (8%)

Query: 169 RIPSTISHVRNLISFNVAYNQFSGMIPP--IYNISSLQYIFIHTNRFHGSVPLDNGVNLP 226
            +P  I          +  N+ S  +P        +L  +++H+N     +       L 
Sbjct: 25  AVPVGIP--AASQRIFLHGNRIS-HVPAASFRACRNLTILWLHSNVL-ARIDAAAFTGLA 80

Query: 227 NLRYFSISGNNLTGSLQ-DSLSNATNLQGLEINRNLFSGKVSIN---FSRLQNLSRLNLG 282
            L    +S N    S+   +      L  L ++R        +    F  L  L  L L 
Sbjct: 81  LLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ---ELGPGLFRGLAALQYLYLQ 137

Query: 283 ENNLGTGTTNDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQIS 342
           +N L     +         +   L  L LH NR   V   +   L  ++  + +  N+++
Sbjct: 138 DNALQALPDD------TFRDLGNLTHLFLHGNRISSVPERAFRGL-HSLDRLLLHQNRVA 190

Query: 343 DTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSIQILFLNEN 387
              P    +L  L  L + +N L+     A+  L+++Q L LN+N
Sbjct: 191 HVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 63.9 bits (156), Expect = 2e-11
 Identities = 42/204 (20%), Positives = 79/204 (38%), Gaps = 11/204 (5%)

Query: 114 SNNKLEGEIPVKISNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPS- 172
             N++             L IL +  N L     A+   L+ L+++D+  N     +   
Sbjct: 40  HGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPA 99

Query: 173 TISHVRNLISFNVAYNQFSGMIPP--IYNISSLQYIFIHTNRFHGSVPLDNGVNLPNLRY 230
           T   +  L + ++        + P     +++LQY+++  N    ++P D   +L NL +
Sbjct: 100 TFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQ-ALPDDTFRDLGNLTH 157

Query: 231 FSISGNNLTGSLQDSLSNATNLQGLEINRNLFSGKVSINFSRLQNLSRLNLGENNLGTGT 290
             + GN ++   + +     +L  L +++N  +      F  L  L  L L  NNL    
Sbjct: 158 LFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALP 217

Query: 291 TNDLDFITLLTNCTKLEVLDLHSN 314
           T        L     L+ L L+ N
Sbjct: 218 TE------ALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 55.8 bits (135), Expect = 1e-08
 Identities = 33/187 (17%), Positives = 67/187 (35%), Gaps = 7/187 (3%)

Query: 56  NLNFLRSINLPNNSFRGKIPHEVGNLFRLQNLTLTNNYFLGKILTD-LSHCSNLMKFEAS 114
               L  + L +N            L  L+ L L++N  L  +          L      
Sbjct: 54  ACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLD 113

Query: 115 NNKLEGEIPVKI-SNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPST 173
              L+ E+   +   L  LQ L + +N L+     +  +L  L  + + GNR+       
Sbjct: 114 RCGLQ-ELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERA 172

Query: 174 ISHVRNLISFNVAYNQFSGMIPP--IYNISSLQYIFIHTNRFHGSVPLDNGVNLPNLRYF 231
              + +L    +  N+ +  + P    ++  L  +++  N    ++P +    L  L+Y 
Sbjct: 173 FRGLHSLDRLLLHQNRVA-HVHPHAFRDLGRLMTLYLFANNLS-ALPTEALAPLRALQYL 230

Query: 232 SISGNNL 238
            ++ N  
Sbjct: 231 RLNDNPW 237

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 72.4 bits (178), Expect = 4e-14
 Identities = 58/291 (19%), Positives = 110/291 (37%), Gaps = 30/291 (10%)

Query: 246 LSNATNLQGLEINRNLFSGKVSINFSRLQNLSRLNLGENNLGTGTTNDLDFITLLTNCTK 305
                N   +   ++  +   ++  + L  ++ L+     + T        I  +     
Sbjct: 15  DPALANAIKIAAGKSNVTD--TVTQADLDGITTLSAFGTGVTT--------IEGVQYLNN 64

Query: 306 LEVLDLHSNRFGGVLPFS-LANLSTTMTEIAIGSNQISDTIPDVIANLVNLNALGVESNQ 364
           L  L+L  N+   + P   L  +    TE+ +  N + +     IA L ++  L + S Q
Sbjct: 65  LIGLELKDNQITDLAPLKNLTKI----TELELSGNPLKNVSA--IAGLQSIKTLDLTSTQ 118

Query: 365 LAGTIPLAIGELKSIQILFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSNGNC 424
           +    PLA   L ++Q+L+L+ N +     S L  LT L  L +    +   + P   N 
Sbjct: 119 ITDVTPLA--GLSNLQVLYLDLNQITNI--SPLAGLTNLQYLSIGNAQVS-DLTP-LANL 172

Query: 425 QNLILLTTRKNKLSGIVPRQLLRIITLSVLLDLSDNLLSGHFPTKVGNLKNLVSLDISSN 484
             L  L    NK+S I P   L  +     + L +N +S   P  + N  NL  + +++ 
Sbjct: 173 SKLTTLKADDNKISDISPLASLPNLIE---VHLKNNQISDVSP--LANTSNLFIVTLTNQ 227

Query: 485 MFSGEIPTTLGGCTSLEYLGMQDNSFTISIPSTLSSLKSITELDLSRNNLS 535
             + +             +  +  S     P+T+S   +    +L+ N  S
Sbjct: 228 TITNQPVFYNNNLVVPNVV--KGPSGAPIAPATISDNGTYASPNLTWNLTS 276

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 71.6 bits (176), Expect = 6e-14
 Identities = 62/314 (19%), Positives = 116/314 (36%), Gaps = 37/314 (11%)

Query: 179 NLISFNVAYNQFSGMIPPIYNISSLQYIFIHTNRFHGSVPLDNGVNLPNLRYFSISGNNL 238
           N I      +  +       ++  +  +            +     L NL    +  N +
Sbjct: 20  NAIKIAAGKSNVTD-TVTQADLDGITTLSAFGTGVTTIEGVQY---LNNLIGLELKDNQI 75

Query: 239 TGSLQDSLSNATNLQGLEINRNLFSGKVSINFSRLQNLSRLNLGENNLGTGTTNDLDFIT 298
           T      L N T +  LE++ N          + LQ++  L+L    +          +T
Sbjct: 76  TD--LAPLKNLTKITELELSGNPLKNV--SAIAGLQSIKTLDLTSTQITD--------VT 123

Query: 299 LLTNCTKLEVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQISDTIPDVIANLVNLNAL 358
            L   + L+VL L  N+   + P  LA L T +  ++IG+ Q+SD  P  +ANL  L  L
Sbjct: 124 PLAGLSNLQVLYLDLNQITNISP--LAGL-TNLQYLSIGNAQVSDLTP--LANLSKLTTL 178

Query: 359 GVESNQLAGTIPLAIGELKSIQILFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIP 418
             + N+++   PLA   L ++  + L  N +  +  S L N + L  + L    +  +  
Sbjct: 179 KADDNKISDISPLA--SLPNLIEVHLKNNQI--SDVSPLANTSNLFIVTLTNQTITNQPV 234

Query: 419 PSNGNCQNLILLTTRKNKLSGIVPRQLLRIITLSVLLDLSDNLLSGHFPTKVGNL----K 474
             N N     ++               +   T+S     +   L+ +  + + N+     
Sbjct: 235 FYNNNLVVPNVVKGPSG--------APIAPATISDNGTYASPNLTWNLTSFINNVSYTFN 286

Query: 475 NLVSLDISSNMFSG 488
             V+   ++  FSG
Sbjct: 287 QSVTFKNTTVPFSG 300

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 70.9 bits (174), Expect = 1e-13
 Identities = 51/256 (19%), Positives = 93/256 (36%), Gaps = 20/256 (7%)

Query: 297 ITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQISDTIPDVIANLVNLN 356
           I           +    +     +    A+L   +T ++     ++      +  L NL 
Sbjct: 12  IFPDPALANAIKIAAGKSNVTDTVT--QADL-DGITTLSAFGTGVTTIEG--VQYLNNLI 66

Query: 357 ALGVESNQLAGTIPLAIGELKSIQILFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGK 416
            L ++ NQ+    PL    L  I  L L+ N L     S++  L  +  L L    +   
Sbjct: 67  GLELKDNQITDLAPLK--NLTKITELELSGNPL--KNVSAIAGLQSIKTLDLTSTQITDV 122

Query: 417 IPPSNGNCQNLILLTTRKNKLSGIVPRQLLRIITLSVLLDLSDNLLSGHFPTKVGNLKNL 476
            P       NL +L    N+++ I P   L  +     L + +  +S   P  + NL  L
Sbjct: 123 TP--LAGLSNLQVLYLDLNQITNISPLAGLTNLQY---LSIGNAQVSDLTP--LANLSKL 175

Query: 477 VSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTISIPSTLSSLKSITELDLSRNNLSG 536
            +L    N  S   P  L    +L  + +++N   IS  S L++  ++  + L+   ++ 
Sbjct: 176 TTLKADDNKISDISP--LASLPNLIEVHLKNNQ--ISDVSPLANTSNLFIVTLTNQTITN 231

Query: 537 HIPQYLENLSFLLFLN 552
               Y  NL     + 
Sbjct: 232 QPVFYNNNLVVPNVVK 247

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 68.9 bits (169), Expect = 5e-13
 Identities = 50/289 (17%), Positives = 107/289 (37%), Gaps = 27/289 (9%)

Query: 80  NLFRLQNLTLTNNYFLGKILTDLSHCSNLMKFEASNNKLEGEIPVKISNLLMLQILNIAE 139
            L     +    +          +    +    A    +       +  L  L  L + +
Sbjct: 17  ALANAIKIAAGKSNVTD--TVTQADLDGITTLSAFGTGVTTIEG--VQYLNNLIGLELKD 72

Query: 140 NHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVAYNQFSGMIPPIYN 199
           N +    P  + NL+ + E+++ GN L  +  S I+ ++++ + ++   Q +  + P+  
Sbjct: 73  NQITDLAP--LKNLTKITELELSGNPL--KNVSAIAGLQSIKTLDLTSTQITD-VTPLAG 127

Query: 200 ISSLQYIFIHTNRFHGSVPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINR 259
           +S+LQ +++  N+     PL     L NL+Y SI    ++      L+N + L  L+ + 
Sbjct: 128 LSNLQVLYLDLNQITNISPLAG---LTNLQYLSIGNAQVSDL--TPLANLSKLTTLKADD 182

Query: 260 NLFSGKVSINFSRLQNLSRLNLGENNLGTGTTNDLDFITLLTNCTKLEVLDLHSNRFGGV 319
           N  S       + L NL  ++L  N +          ++ L N + L ++ L +      
Sbjct: 183 NKISD--ISPLASLPNLIEVHLKNNQISD--------VSPLANTSNLFIVTLTNQTITNQ 232

Query: 320 LPFSLANLSTTMTEIAIGSNQISDTIPDVIANLVNLNALGVESNQLAGT 368
             F   NL        +     +   P  I++     +  +  N  +  
Sbjct: 233 PVFYNNNLVVPNV---VKGPSGAPIAPATISDNGTYASPNLTWNLTSFI 278

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 67.4 bits (165), Expect = 2e-12
 Identities = 52/228 (22%), Positives = 88/228 (38%), Gaps = 19/228 (8%)

Query: 338 SNQISDTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSIQILFLNENFLRGTIPSSL 397
              I+   PD    L N   +    + +  T+  A  +L  I  L      +  T    +
Sbjct: 6   PTAINVIFPD--PALANAIKIAAGKSNVTDTVTQA--DLDGITTLSAFGTGV--TTIEGV 59

Query: 398 GNLTLLTQLILEVNNLQGKIPPSNGNCQNLILLTTRKNKLSGIVPRQLLRIITLSVLLDL 457
             L  L  L L+ N +   + P   N   +  L    N L  +     L+ I     LDL
Sbjct: 60  QYLNNLIGLELKDNQIT-DLAPL-KNLTKITELELSGNPLKNVSAIAGLQSIKT---LDL 114

Query: 458 SDNLLSGHFPTKVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTISIPST 517
           +   ++    T +  L NL  L +  N  +   P  L G T+L+YL + +    +S  + 
Sbjct: 115 TSTQITD--VTPLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQ--VSDLTP 168

Query: 518 LSSLKSITELDLSRNNLSGHIPQYLENLSFLLFLNMSYNHFEGKVPIE 565
           L++L  +T L    N +S   P  L +L  L+ +++  N      P+ 
Sbjct: 169 LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSPLA 214

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 51.6 bits (124), Expect = 3e-07
 Identities = 47/228 (20%), Positives = 85/228 (37%), Gaps = 16/228 (7%)

Query: 52  PFVGNLNFLRSINLPNNSFRGKIPHEVGNLFRLQNLTLTNNYFLGKILTDLSHCSNLMKF 111
             + NL  +  + L  N    K    +  L  ++ L LT+       +T L+  SNL   
Sbjct: 79  APLKNLTKITELELSGN--PLKNVSAIAGLQSIKTLDLTSTQITD--VTPLAGLSNLQVL 134

Query: 112 EASNNKLEGEIPVKISNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIP 171
               N++    P  ++ L  LQ L+I    +    P  + NLS L  +    N++     
Sbjct: 135 YLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKI--SDI 188

Query: 172 STISHVRNLISFNVAYNQFSGMIPPIYNISSLQYIFIHTNRFHGSVPLDNGVNLPNLRYF 231
           S ++ + NLI  ++  NQ S  + P+ N S+L  + +            N   +      
Sbjct: 189 SPLASLPNLIEVHLKNNQIS-DVSPLANTSNLFIVTLTNQTITNQPVFYNNNLVVPN--- 244

Query: 232 SISGNNLTGSLQDSLSNATNLQGLEINRNL--FSGKVSINFSRLQNLS 277
            + G +       ++S+        +  NL  F   VS  F++     
Sbjct: 245 VVKGPSGAPIAPATISDNGTYASPNLTWNLTSFINNVSYTFNQSVTFK 292

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 68.1 bits (167), Expect = 2e-13
 Identities = 28/171 (16%), Positives = 63/171 (36%), Gaps = 14/171 (8%)

Query: 173 TISHVRNLISFNVAYNQFSGMIPPIYNISSLQYIFIHTNRFHGSVPLDNGVNLPNLRYFS 232
           T + + +L    +A    +  +  I    +++ + I+        P+     L NL    
Sbjct: 39  TEAQMNSLTYITLANINVTD-LTGIEYAHNIKDLTINNIHATNYNPISG---LSNLERLR 94

Query: 233 ISGNNLTGSLQDSLSNATNLQGLEINRNLFSGKVSINFSRLQNLSRLNLGENNLGTGTTN 292
           I G ++T     +LS  T+L  L+I+ +     +    + L  ++ ++L  N   T    
Sbjct: 95  IMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITD--- 151

Query: 293 DLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQISD 343
               I  L    +L+ L++  +         + +    + ++   S  I  
Sbjct: 152 ----IMPLKTLPELKSLNIQFDGVHDYRG--IEDF-PKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 67.7 bits (166), Expect = 3e-13
 Identities = 31/162 (19%), Positives = 62/162 (38%), Gaps = 7/162 (4%)

Query: 79  GNLFRLQNLTLTNNYFLGKILTDLSHCSNLMKFEASNNKLEGEIPVKISNLLMLQILNIA 138
             +  L  +TL N       LT + +  N+     +N       P  IS L  L+ L I 
Sbjct: 41  AQMNSLTYITLANINV--TDLTGIEYAHNIKDLTINNIHATNYNP--ISGLSNLERLRIM 96

Query: 139 ENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVAYNQFSGMIPPIY 198
              +      ++  L++L  +D+  +     I + I+ +  + S +++YN     I P+ 
Sbjct: 97  GKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLK 156

Query: 199 NISSLQYIFIHTNRFHGSVPLDNGVNLPNLRYFSISGNNLTG 240
            +  L+ + I  +  H    ++   + P L         + G
Sbjct: 157 TLPELKSLNIQFDGVHDYRGIE---DFPKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 65.0 bits (159), Expect = 3e-12
 Identities = 36/201 (17%), Positives = 71/201 (35%), Gaps = 17/201 (8%)

Query: 359 GVESNQLAGTIPLAIGELKSIQILFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIP 418
           G++++Q    IP +    K+     L ++    T   +   +  LT + L   N+   + 
Sbjct: 7   GLKASQDNVNIPDS--TFKAYLNGLLGQS---STANITEAQMNSLTYITLANINVT-DLT 60

Query: 419 PSNGNCQNLILLTTRKNKLSGIVPRQLLRIITLSVL--LDLSDNLLSGHFPTKVGNLKNL 476
                  N+  LT      +   P     I  LS L  L +    ++      +  L +L
Sbjct: 61  G-IEYAHNIKDLTINNIHATNYNP-----ISGLSNLERLRIMGKDVTSDKIPNLSGLTSL 114

Query: 477 VSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTISIPSTLSSLKSITELDLSRNNLSG 536
             LDIS +     I T +     +  + +  N   I+    L +L  +  L++  + +  
Sbjct: 115 TLLDISHSAHDDSILTKINTLPKVNSIDLSYNGA-ITDIMPLKTLPELKSLNIQFDGVHD 173

Query: 537 HIPQYLENLSFLLFLNMSYNH 557
           +    +E+   L  L      
Sbjct: 174 YRG--IEDFPKLNQLYAFSQT 192

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 63.8 bits (156), Expect = 6e-12
 Identities = 29/192 (15%), Positives = 65/192 (33%), Gaps = 16/192 (8%)

Query: 250 TNLQGLEINRNLFSGKVSINFSRLQNLSRLNLGENNLGTGTTNDLDFITLLTNCTKLEVL 309
           +  +         S   +I  +++ +L+ + L   N+          +T +     ++ L
Sbjct: 20  STFKAYLNGLLGQSSTANITEAQMNSLTYITLANINVTD--------LTGIEYAHNIKDL 71

Query: 310 DLHSNRFGGVLPFS-LANLSTTMTEIAIGSNQISDTIPDVIANLVNLNALGVESNQLAGT 368
            +++       P S L+NL      + I    ++      ++ L +L  L +  +    +
Sbjct: 72  TINNIHATNYNPISGLSNL----ERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDS 127

Query: 369 IPLAIGELKSIQILFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSNGNCQNLI 428
           I   I  L  +  + L+ N     I   L  L  L  L ++ + +         +   L 
Sbjct: 128 ILTKINTLPKVNSIDLSYNGAITDI-MPLKTLPELKSLNIQFDGVH-DYRGIE-DFPKLN 184

Query: 429 LLTTRKNKLSGI 440
            L      + G 
Sbjct: 185 QLYAFSQTIGGK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 61.1 bits (149), Expect = 5e-11
 Identities = 31/224 (13%), Positives = 66/224 (29%), Gaps = 42/224 (18%)

Query: 266 VSINFSRLQNLSRLNLGENNLGTGTTNDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLA 325
           V+I  S  +      LG+++    T   +           L  + L +     +     A
Sbjct: 15  VNIPDSTFKAYLNGLLGQSSTANITEAQM---------NSLTYITLANINVTDLTGIEYA 65

Query: 326 NLSTTMTEIAIGSNQISDTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSIQILFLN 385
                + ++ I +   ++  P  I+ L NL  L +    +       +  L S+ +L ++
Sbjct: 66  ---HNIKDLTINNIHATNYNP--ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDIS 120

Query: 386 ENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSNGNCQNLILLTTRKNKLSGIVPRQL 445
            +    +I + +  L  +  + L  N     I P       L  L  + + +        
Sbjct: 121 HSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP-LKTLPELKSLNIQFDGVHDYRG--- 176

Query: 446 LRIITLSVLLDLSDNLLSGHFPTKVGNLKNLVSLDISSNMFSGE 489
                                   + +   L  L   S    G+
Sbjct: 177 ------------------------IEDFPKLNQLYAFSQTIGGK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 56.5 bits (137), Expect = 2e-09
 Identities = 27/214 (12%), Positives = 61/214 (28%), Gaps = 37/214 (17%)

Query: 106 SNLMKFEASNNKLEGEIPVKISNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNR 165
           S    +            +  + +  L  + +A  ++       +  +            
Sbjct: 20  STFKAYLNGLLGQSSTANITEAQMNSLTYITLANINVT-----DLTGIEYAH-------- 66

Query: 166 LGGRIPSTISHVRNLISFNVAYNQFSGMIPPIYNISSLQYIFIHTNRFHGSVPLDNGVNL 225
                        N+    +     +    PI  +S+L+ + I       S  + N   L
Sbjct: 67  -------------NIKDLTINNIHATN-YNPISGLSNLERLRIMGKDV-TSDKIPNLSGL 111

Query: 226 PNLRYFSISGNNLTGSLQDSLSNATNLQGLEINRNLFSGKVSINFSRLQNLSRLNLGENN 285
            +L    IS +    S+   ++    +  ++++ N     +      L  L  LN+  + 
Sbjct: 112 TSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDG 170

Query: 286 LGTGTTNDLDFITLLTNCTKLEVLDLHSNRFGGV 319
           +             + +  KL  L   S   GG 
Sbjct: 171 VHD--------YRGIEDFPKLNQLYAFSQTIGGK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 50.0 bits (120), Expect = 4e-07
 Identities = 19/137 (13%), Positives = 50/137 (36%), Gaps = 5/137 (3%)

Query: 56  NLNFLRSINLPNNSFRGKIPHEVGNLFRLQNLTLTNNYFLGKILTDLSHCSNLMKFEASN 115
             + ++ + + N       P  +  L  L+ L +         + +LS  ++L   + S+
Sbjct: 64  YAHNIKDLTINNIHATNYNP--ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISH 121

Query: 116 NKLEGEIPVKISNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTIS 175
           +  +  I  KI+ L  +  ++++ N     +   +  L  L+ ++++ + +       I 
Sbjct: 122 SAHDDSILTKINTLPKVNSIDLSYNGAITDIMP-LKTLPELKSLNIQFDGVHDYRG--IE 178

Query: 176 HVRNLISFNVAYNQFSG 192
               L           G
Sbjct: 179 DFPKLNQLYAFSQTIGG 195

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 68.6 bits (168), Expect = 7e-13
 Identities = 43/233 (18%), Positives = 75/233 (32%), Gaps = 35/233 (15%)

Query: 301 TNCTKLEVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQISDTIPDVIANLVNLNALGV 360
           +       ++        + P    +L    T + +  N +       +     L  L +
Sbjct: 7   SKVASHLEVNCDKRNLTAL-P---PDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNL 62

Query: 361 ESNQLAGTIPLAIGELKSIQILFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPS 420
           +  +L   +    G L  +  L L+ N L+ ++P     L  LT L +  N L   +P  
Sbjct: 63  DRAELT-KLQ-VDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPL- 117

Query: 421 NGNCQNLILLTTRKNKLSGIVPRQLLRIITLSVLLDLSDNLLSGHFPTKV-GNLKNLVSL 479
            G  + L  L                        L L  N L    P  +      L  L
Sbjct: 118 -GALRGLGELQE----------------------LYLKGNELK-TLPPGLLTPTPKLEKL 153

Query: 480 DISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTISIPSTLSSLKSITELDLSRN 532
            +++N  +      L G  +L+ L +Q+NS   +IP        +    L  N
Sbjct: 154 SLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 66.7 bits (163), Expect = 3e-12
 Identities = 36/166 (21%), Positives = 61/166 (36%), Gaps = 12/166 (7%)

Query: 250 TNLQGLEINRNLFSGKVSINFSRLQNLSRLNLGENNLGTGTTNDLDFITLLTNCTKLEVL 309
            +   L ++ NL              L++LNL    L          + +      L  L
Sbjct: 31  KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK--------LQVDGTLPVLGTL 82

Query: 310 DLHSNRFGGVLPFSLANLSTTMTEIAIGSNQISDTIPDVIANLVNLNALGVESNQLAGTI 369
           DL  N+    LP     L   +T + +  N+++      +  L  L  L ++ N+L  T+
Sbjct: 83  DLSHNQL-QSLPLLGQTL-PALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-TL 139

Query: 370 PLAI-GELKSIQILFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQ 414
           P  +      ++ L L  N L       L  L  L  L+L+ N+L 
Sbjct: 140 PPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY 185

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 59.7 bits (145), Expect = 5e-10
 Identities = 46/191 (24%), Positives = 73/191 (38%), Gaps = 16/191 (8%)

Query: 224 NLP-NLRYFSISGNNLTGSLQDSLSNATNLQGLEINRNLFSGKVSIN-FSRLQNLSRLNL 281
           +LP +     +S N L      +L   T L  L ++R   +    +     L  L  L+L
Sbjct: 28  DLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT---KLQVDGTLPVLGTLDL 84

Query: 282 GENNLGTGTTNDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQI 341
             N L +          L      L VLD+  NR   +   +L  L   + E+ +  N++
Sbjct: 85  SHNQLQS-------LPLLGQTLPALTVLDVSFNRLTSLPLGALRGL-GELQELYLKGNEL 136

Query: 342 SDTIPDVIANLVNLNALGVESNQLAGTIPLAI-GELKSIQILFLNENFLRGTIPSSLGNL 400
               P ++     L  L + +N L   +P  +   L+++  L L EN L  TIP      
Sbjct: 137 KTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGS 194

Query: 401 TLLTQLILEVN 411
            LL    L  N
Sbjct: 195 HLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 50.9 bits (122), Expect = 4e-07
 Identities = 40/184 (21%), Positives = 73/184 (39%), Gaps = 12/184 (6%)

Query: 132 LQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVAYNQFS 191
             IL+++EN L     A++   + L ++++    L          +  L + ++++NQ  
Sbjct: 33  TTILHLSENLLYTFSLATLMPYTRLTQLNLDRAEL--TKLQVDGTLPVLGTLDLSHNQLQ 90

Query: 192 GMIPPIYNISSLQYIFIHTNRFHGSVPLDNGVNLPNLRYFSISGNNLTGSLQDSL-SNAT 250
            +      + +L  + +  NR   S+PL     L  L+   + GN L  +L   L +   
Sbjct: 91  SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELK-TLPPGLLTPTP 148

Query: 251 NLQGLEINRNLFSGKVSINFSRLQNLSRLNLGENNLGTGTTNDLDFITLLTNCTKLEVLD 310
            L+ L +  N  +   +   + L+NL  L L EN+L T                 L    
Sbjct: 149 KLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGS-------HLLPFAF 201

Query: 311 LHSN 314
           LH N
Sbjct: 202 LHGN 205

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 66.8 bits (163), Expect = 3e-12
 Identities = 37/279 (13%), Positives = 79/279 (28%), Gaps = 28/279 (10%)

Query: 55  GNLNFLRSINLPNNSFRGKIPHEVGNLFRLQNLTLTNNYFLGKILTDLSH---CSNLMKF 111
           G  +    +   +         ++     L+ LT+       +IL         S L + 
Sbjct: 41  GGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQEL 100

Query: 112 EASNNKLEGEIPVKISNLLMLQILNIAENHLKGQ-LPASIGNLS-----ALQEIDVRGNR 165
              N ++ G  P  +       +  +   ++      A +  L       L+ + +    
Sbjct: 101 TLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAH 160

Query: 166 LGGRIPSTISHVRNLISFNVAYNQFSGMIPPI-----YNISSLQYIFIHTNRFHGSVPLD 220
                   +     L + +++ N   G    I         +LQ + +          + 
Sbjct: 161 SLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVC 220

Query: 221 NGV--NLPNLRYFSISGNNLTGSLQDSL-SNATNLQGLEINRNLFSGKVSINFSRLQNLS 277
           + +      L+   +S N+L  +         + L  L ++         +       LS
Sbjct: 221 SALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK---QVPKGLPAKLS 277

Query: 278 RLNLGENNLGTGTTNDLDFITLLTNCTKLEVLDLHSNRF 316
            L+L  N         LD         ++  L L  N F
Sbjct: 278 VLDLSYNR--------LDRNPSPDELPQVGNLSLKGNPF 308

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 63.8 bits (155), Expect = 3e-11
 Identities = 33/178 (18%), Positives = 60/178 (33%), Gaps = 13/178 (7%)

Query: 395 SSLGNLTLLTQLILEVNNLQGKIPPSNGNCQNLILLTTRKNKLSGIVPRQLLRIITLSVL 454
             +  ++ L +L LE   + G  PP         L       +S       L  +   + 
Sbjct: 89  LRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLK 148

Query: 455 -----LDLSDNLLSGHFPTKVGNLKNLVSLDISSNMFSGEIPTTLGGC----TSLEYLGM 505
                L ++          +V     L +LD+S N   GE       C     +L+ L +
Sbjct: 149 PGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLAL 208

Query: 506 QDNSFT---ISIPSTLSSLKSITELDLSRNNLSGHIP-QYLENLSFLLFLNMSYNHFE 559
           ++           +  ++   +  LDLS N+L         +  S L  LN+S+   +
Sbjct: 209 RNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK 266

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 63.8 bits (155), Expect = 3e-11
 Identities = 54/315 (17%), Positives = 91/315 (28%), Gaps = 37/315 (11%)

Query: 231 FSISGNNLTGSLQDSLSNATNLQGLEINRNLFSGKVSI-NFSRLQNLSRLNLGENNLGTG 289
           +S + N L  +  +      +L+ L    +  +      +  +  +L RL +    +   
Sbjct: 24  WSSAFNCLGAADVELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARI--- 80

Query: 290 TTNDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQISDTIPDVI 349
            +  L     +   + L+ L L +    G  P  L   +     I    N    T    +
Sbjct: 81  PSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWL 140

Query: 350 ANLVNLNALGVESNQLAGTIPLAIGELKSIQILFLNENFLRGTIPSSLGNLTLLTQLILE 409
           A L                          +++L + +          +     L+ L L 
Sbjct: 141 AELQQW-------------------LKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLS 181

Query: 410 VNNLQGKIPPSNGNC-------QNLILLTTRKNKLSGIVPRQLLRIITLSVLLDLSDNLL 462
            N   G+    +  C       Q L L        SG+        + L  L DLS N L
Sbjct: 182 DNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGL-DLSHNSL 240

Query: 463 SGHFPTKV-GNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTISIPSTLSSL 521
                         L SL++S      ++P  L     L  L +  N      PS    L
Sbjct: 241 RDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLD-RNPSPDE-L 295

Query: 522 KSITELDLSRNNLSG 536
             +  L L  N    
Sbjct: 296 PQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 63.4 bits (154), Expect = 4e-11
 Identities = 43/284 (15%), Positives = 86/284 (30%), Gaps = 21/284 (7%)

Query: 121 EIPVKISNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRN- 179
           ++ +      +  +L   +          I    +L+ + VR  R+  RI      V   
Sbjct: 35  DVELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGI 94

Query: 180 --LISFNVAYNQFSGMIPP---IYNISSLQYIFIHTNRFHGSVPLDNGVN---LPNLRYF 231
             L    +   + +G  PP         L  + +    +         +     P L+  
Sbjct: 95  SGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVL 154

Query: 232 SISGNNLTGSLQDSLSNATNLQGLEINRNLFSGKVSINFS----RLQNLSRLNLGENNLG 287
           SI+  +      + +     L  L+++ N   G+  +  +    +   L  L L    + 
Sbjct: 155 SIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGM- 213

Query: 288 TGTTNDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQISDTIPD 347
              T       L     +L+ LDL  N           +  + +  + +    +      
Sbjct: 214 --ETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKG 271

Query: 348 VIANLVNLNALGVESNQLAGTIPLAIGELKSIQILFLNENFLRG 391
           + A L  L+   +  N+L    P    EL  +  L L  N    
Sbjct: 272 LPAKLSVLD---LSYNRLD-RNPS-PDELPQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 60.7 bits (147), Expect = 3e-10
 Identities = 46/274 (16%), Positives = 80/274 (29%), Gaps = 25/274 (9%)

Query: 300 LTNCTKLEVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQISDTIPDVIANLVNLNALG 359
             NC     ++L+             +    + +       +S         L  L    
Sbjct: 27  AFNCLGAADVELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLS---------LKRLTVRA 77

Query: 360 VESNQLAGTIPLAIGELKSIQILFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQ-GKIP 418
                      L +  +  +Q L L    + GT P  L   T     IL + N+      
Sbjct: 78  ARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRD 137

Query: 419 PSNGNCQNLILLTTRKNKLSG----IVPRQLLRIITLSVLLDLSDNLLSGHFP----TKV 470
                 Q  +    +   ++         + +R+      LDLSDN   G          
Sbjct: 138 AWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCP 197

Query: 471 GNLKNLVSLDISSNMF---SGEIPTTLGGCTSLEYLGMQDNSFTISIPSTLSS-LKSITE 526
                L  L + +      SG           L+ L +  NS   +  +        +  
Sbjct: 198 LKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNS 257

Query: 527 LDLSRNNLSGHIPQYLENLSFLLFLNMSYNHFEG 560
           L+LS   L   +P+ L   + L  L++SYN  + 
Sbjct: 258 LNLSFTGLK-QVPKGL--PAKLSVLDLSYNRLDR 288

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 55.3 bits (133), Expect = 2e-08
 Identities = 33/183 (18%), Positives = 59/183 (32%), Gaps = 23/183 (12%)

Query: 60  LRSINLPNNSFRGKIPHEVGNLFRLQNLTLTNNYFLGKILTDLSHCSNLMKFEASNNKLE 119
           L+ +++           +V     L  L L++N  LG+     + C              
Sbjct: 151 LKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALC-------------- 196

Query: 120 GEIPVKISNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTI-SHVR 178
              P+K   L +L + N       G   A       LQ +D+  N L     +       
Sbjct: 197 ---PLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPS 253

Query: 179 NLISFNVAYNQFSGMIPPIYNISSLQYIFIHTNRFHGSVPLDNGVNLPNLRYFSISGNNL 238
            L S N+++     +   +   + L  + +  NR        +   LP +   S+ GN  
Sbjct: 254 QLNSLNLSFTGLKQVPKGLP--AKLSVLDLSYNRLDR---NPSPDELPQVGNLSLKGNPF 308

Query: 239 TGS 241
             S
Sbjct: 309 LDS 311

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 45.3 bits (107), Expect = 3e-05
 Identities = 34/185 (18%), Positives = 59/185 (31%), Gaps = 13/185 (7%)

Query: 16  NNSINLCQWTGVTCGHRRQRVTGLDLRHQSVGGVLSPFVGNLNFLRSINLPNNSFRGKIP 75
            +      W        +  +  L +            V     L +++L +N   G+  
Sbjct: 131 VSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERG 190

Query: 76  HE----VGNLFRLQNLTLTNNYF---LGKILTDLSHCSNLMKFEASNNKLEGEIPVKISN 128
                       LQ L L N       G      +    L   + S+N L         +
Sbjct: 191 LISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCD 250

Query: 129 LL-MLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVAY 187
               L  LN++   LK Q+P  +   + L  +D+  NRL  R PS    +  + + ++  
Sbjct: 251 WPSQLNSLNLSFTGLK-QVPKGL--PAKLSVLDLSYNRL-DRNPS-PDELPQVGNLSLKG 305

Query: 188 NQFSG 192
           N F  
Sbjct: 306 NPFLD 310

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 67.7 bits (166), Expect = 4e-12
 Identities = 74/360 (20%), Positives = 124/360 (34%), Gaps = 50/360 (13%)

Query: 224 NLPNLRYFSISGNNLTGS----LQDSL-SNATNLQGLEINRNLFSGK----VSINFSRLQ 274
             P L   ++  N L       +   L + +  +Q L +     +G     +S     L 
Sbjct: 54  VNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLP 113

Query: 275 NLSRLNLGENNLGTGTTNDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANL---STTM 331
            L  L+L +N LG      L    LL    +LE L L            LA++       
Sbjct: 114 TLQELHLSDNLLGDAGLQLL-CEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDF 172

Query: 332 TEIAIGSNQISDTIPDVIA-----NLVNLNALGVESNQL----AGTIPLAIGELKSIQIL 382
            E+ + +N I++    V+      +   L AL +ES  +       +   +    S++ L
Sbjct: 173 KELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLREL 232

Query: 383 FLNENFLRGT-----IPSSLGNLTLLTQLILEVNNLQGK----IPPSNGNCQNLILLTTR 433
            L  N L         P  L   + L  L +    +  K    +       ++L  L+  
Sbjct: 233 ALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLA 292

Query: 434 KNKLSGIVPRQLLRII-----TLSVLLDLSDNLLSG----HFPTKVGNLKNLVSLDISSN 484
            N+L     R L   +      L  L  +     +     HF + +   + L+ L IS+N
Sbjct: 293 GNELGDEGARLLCETLLEPGCQLESL-WVKSCSFTAACCSHFSSVLAQNRFLLELQISNN 351

Query: 485 MFSGEIPTTLG-----GCTSLEYLGMQDNSFT----ISIPSTLSSLKSITELDLSRNNLS 535
                    L        + L  L + D   +     S+ +TL +  S+ ELDLS N L 
Sbjct: 352 RLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLG 411

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 61.1 bits (149), Expect = 4e-10
 Identities = 62/347 (17%), Positives = 105/347 (30%), Gaps = 62/347 (17%)

Query: 250 TNLQGLEINRNLFSGK-VSINFSRLQNLSRLNLGENNLGTGTTNDLDFITLLTNCTKLEV 308
            ++Q L+I     S    +     LQ    + L +  L      D+     L     L  
Sbjct: 3   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISS--ALRVNPALAE 60

Query: 309 LDLHSNRFGG----VLPFSLANLSTTMTEIAIGSNQISDT----IPDVIANLVNLNALGV 360
           L+L SN  G      +   L   S  + ++++ +  ++      +   +  L  L  L +
Sbjct: 61  LNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHL 120

Query: 361 ESNQL--AGTIPLAIGELK---SIQILFLNENFLRGT----IPSSLGNLTLLTQLILEVN 411
             N L  AG   L  G L     ++ L L    L       + S L       +L +  N
Sbjct: 121 SDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNN 180

Query: 412 NL--QGKIPPSNGNCQNLILLTTRKNKLSGIVPRQLLRIITLSVLLDLSDNLLS----GH 465
           ++   G      G   +   L                        L L    ++      
Sbjct: 181 DINEAGVRVLCQGLKDSPCQLEA----------------------LKLESCGVTSDNCRD 218

Query: 466 FPTKVGNLKNLVSLDISSNMFSGE-----IPTTLGGCTSLEYLGMQDNSFT----ISIPS 516
               V +  +L  L + SN           P  L   + L  L + +   T      +  
Sbjct: 219 LCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCR 278

Query: 517 TLSSLKSITELDLSRNNLSGHIPQYL-----ENLSFLLFLNMSYNHF 558
            L + +S+ EL L+ N L     + L     E    L  L +    F
Sbjct: 279 VLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSF 325

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 51.1 bits (123), Expect = 5e-07
 Identities = 54/359 (15%), Positives = 108/359 (30%), Gaps = 51/359 (14%)

Query: 34  QRVTGLDLRHQSVG----GVLSPFVGNLNFLRSINLPNNSFRGKIPHEVGNLFRLQNLTL 89
           Q+   + L    +       +S  +     L  +NL +N       H V    +  +  +
Sbjct: 28  QQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKI 87

Query: 90  TNNYFLGKILTD---------LSHCSNLMKFEASNNKLEGEIPVKISNLLM-----LQIL 135
                    LT          L     L +   S+N L       +   L+     L+ L
Sbjct: 88  QKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKL 147

Query: 136 NIAENHLKGQ----LPASIGNLSALQEIDVRGNRLGGRIPSTISHV-----RNLISFNVA 186
            +    L       L + +      +E+ V  N +       +          L +  + 
Sbjct: 148 QLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLE 207

Query: 187 YNQFS-----GMIPPIYNISSLQYIFIHTNRFH--GSVPLDNGVNLPN--LRYFSISGNN 237
               +      +   + + +SL+ + + +N+    G   L  G+  P+  LR   I    
Sbjct: 208 SCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECG 267

Query: 238 LT----GSLQDSLSNATNLQGLEINRNLFSGKVSINFSRL-----QNLSRLNLGENNLGT 288
           +T    G L   L    +L+ L +  N    + +             L  L +   +   
Sbjct: 268 ITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTA 327

Query: 289 GTTNDLDFITLLTNCTKLEVLDLHSNRFG--GVLPFS--LANLSTTMTEIAIGSNQISD 343
              +     ++L     L  L + +NR    GV      L    + +  + +    +SD
Sbjct: 328 ACCSHF--SSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSD 384

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 65.8 bits (161), Expect = 5e-12
 Identities = 51/269 (18%), Positives = 99/269 (36%), Gaps = 28/269 (10%)

Query: 268 INFSRLQNLSRLNLGENNLGTGTTNDLDFITLLTNCTKLEVLDLHSNRFGGVLPFS-LAN 326
            +        + NL + ++                   ++ +  +++    V     L N
Sbjct: 18  FSDDAFAETIKDNLKKKSVTD--------AVTQNELNSIDQIIANNSDIKSVQGIQYLPN 69

Query: 327 LSTTMTEIAIGSNQISDTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSIQILFLNE 386
           +    T++ +  N+++D  P  +ANL NL  L ++ N++     L   +LK ++ L L  
Sbjct: 70  V----TKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDLSSLK--DLKKLKSLSLEH 121

Query: 387 NFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSNGNCQNLILLTTRKNKLSGIVPRQLL 446
           N +  +  + L +L  L  L L  N +   I         L  L+   N++S IVP   L
Sbjct: 122 NGI--SDINGLVHLPQLESLYLGNNKIT-DITV-LSRLTKLDTLSLEDNQISDIVPLAGL 177

Query: 447 RIITLSVLLDLSDNLLSGHFPTKVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQ 506
             +     L LS N +S      +  LKNL  L++ S     +             +   
Sbjct: 178 TKLQN---LYLSKNHISDLRA--LAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNT 232

Query: 507 DNSFTISIPSTLSSLKSITELDLSRNNLS 535
           D   ++  P  +S      + ++  +   
Sbjct: 233 DG--SLVTPEIISDDGDYEKPNVKWHLPE 259

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 65.5 bits (160), Expect = 6e-12
 Identities = 43/262 (16%), Positives = 97/262 (37%), Gaps = 28/262 (10%)

Query: 224 NLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINRNLFSGKVSI-NFSRLQNLSRLNLG 282
                   ++   ++T +   + +   ++  +  N +      S+     L N+++L L 
Sbjct: 22  AFAETIKDNLKKKSVTDA--VTQNELNSIDQIIANNSDIK---SVQGIQYLPNVTKLFLN 76

Query: 283 ENNLGTGTTNDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQIS 342
            N L          I  L N   L  L L  N+   +    L +L   +  +++  N IS
Sbjct: 77  GNKLTD--------IKPLANLKNLGWLFLDENKVKDLSS--LKDL-KKLKSLSLEHNGIS 125

Query: 343 DTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSIQILFLNENFLRGTIPSSLGNLTL 402
           D     + +L  L +L + +N++     L+   L  +  L L +N +  +    L  LT 
Sbjct: 126 DING--LVHLPQLESLYLGNNKITDITVLS--RLTKLDTLSLEDNQI--SDIVPLAGLTK 179

Query: 403 LTQLILEVNNLQGKIPPSNGNCQNLILLTTRKNKLSGIVPRQLLRIITLSVLLDLSDNLL 462
           L  L L  N++   +       +NL +L     +           ++  + + +   +L+
Sbjct: 180 LQNLYLSKNHIS-DLRA-LAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLV 237

Query: 463 SGHFPTKVGNLKNLVSLDISSN 484
           +   P  + +  +    ++  +
Sbjct: 238 T---PEIISDDGDYEKPNVKWH 256

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 63.9 bits (156), Expect = 2e-11
 Identities = 57/266 (21%), Positives = 92/266 (34%), Gaps = 44/266 (16%)

Query: 292 NDLDFITLLTNCTKLEVLDLHSNRFGGVLPFS-LANLSTTMTEIAIGSNQISDTIPDVIA 350
             +  I       +    +L        +  + L ++     +I   ++ I       I 
Sbjct: 12  TPIKQIFSDDAFAETIKDNLKKKSVTDAVTQNELNSI----DQIIANNSDIKSVQG--IQ 65

Query: 351 NLVNLNALGVESNQLAGTIPLAIGELKSIQILFLNENFLRGTIPSSLGNLTLLTQLILEV 410
            L N+  L +  N+L    PLA   LK++  LFL+EN +     SSL +L  L  L LE 
Sbjct: 66  YLPNVTKLFLNGNKLTDIKPLA--NLKNLGWLFLDENKV--KDLSSLKDLKKLKSLSLEH 121

Query: 411 NNLQGKIPPSNGNCQNLILLTTRKNKLSGIVPRQLLRIITLSVLLDLSDNLLSGHFPTKV 470
           N +   I     +   L  L    NK++ I                             +
Sbjct: 122 NGIS-DINGLV-HLPQLESLYLGNNKITDITV---------------------------L 152

Query: 471 GNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTISIPSTLSSLKSITELDLS 530
             L  L +L +  N  S  +P  L G T L+ L +  N   IS    L+ LK++  L+L 
Sbjct: 153 SRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNH--ISDLRALAGLKNLDVLELF 208

Query: 531 RNNLSGHIPQYLENLSFLLFLNMSYN 556
                     +  NL     +  +  
Sbjct: 209 SQECLNKPINHQSNLVVPNTVKNTDG 234

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 55.1 bits (133), Expect = 2e-08
 Identities = 43/249 (17%), Positives = 95/249 (38%), Gaps = 20/249 (8%)

Query: 39  LDLRHQSVGGVLSPFVGNLNFLRSINLPNNSFRGKIPHEVGNLFRLQNLTLTNNYFLGKI 98
            +L+ +SV          LN +  I   N+  +  +   +  L  +  L L  N      
Sbjct: 29  DNLKKKSVTDA--VTQNELNSIDQIIANNSDIK-SVQ-GIQYLPNVTKLFLNGNKL--TD 82

Query: 99  LTDLSHCSNLMKFEASNNKLEGEIPVKISNLLMLQILNIAENHLKGQLPASIGNLSALQE 158
           +  L++  NL       NK++ ++   + +L  L+ L++  N +       + +L  L+ 
Sbjct: 83  IKPLANLKNLGWLFLDENKVK-DLSS-LKDLKKLKSLSLEHNGIS--DINGLVHLPQLES 138

Query: 159 IDVRGNRLGGRIPSTISHVRNLISFNVAYNQFSGMIPPIYNISSLQYIFIHTNRFHGSVP 218
           + +  N++     + +S +  L + ++  NQ S  I P+  ++ LQ +++  N       
Sbjct: 139 LYLGNNKI--TDITVLSRLTKLDTLSLEDNQIS-DIVPLAGLTKLQNLYLSKNHISDLRA 195

Query: 219 LDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINRNLFSGKVSINF-SRLQNLS 277
           L     L NL    +            +++ +NL      +N     V+    S   +  
Sbjct: 196 LAG---LKNLDVLELFSQECL---NKPINHQSNLVVPNTVKNTDGSLVTPEIISDDGDYE 249

Query: 278 RLNLGENNL 286
           + N+  +  
Sbjct: 250 KPNVKWHLP 258

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 65.5 bits (159), Expect = 2e-11
 Identities = 48/345 (13%), Positives = 100/345 (28%), Gaps = 21/345 (6%)

Query: 211 NRFHGSVPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINRNLFSGKVSINF 270
                 +      ++    + S     L+      L+  + +  L +  +     V    
Sbjct: 230 FYHRWLLGRAEPHDVLCCVHVSREEACLSVCFSRPLTVGSRMGTLLLMVDEAPLSVEWRT 289

Query: 271 SRLQNLSRLNLGENNLGTGTTNDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSTT 330
              +N        +       + L   T     T  +              +   + +  
Sbjct: 290 PDGRNRPSHVWLCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSATDE 349

Query: 331 MTEIAIGSNQISDTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSIQILFLNENFLR 390
                  S + S  +   + +   L  L  E+     TI   I  ++++  L   +  L 
Sbjct: 350 QLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTI---ILLMRALDPLLYEKETL- 405

Query: 391 GTIPSSLGNLTLLTQLILEV-----NNLQGKIPPSNGNCQNLILLTTRKNKLSGIVPRQL 445
                    L  +  +         +    +         ++ +L      L+ +   + 
Sbjct: 406 ----QYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCHLEQ 461

Query: 446 LRIITLSVLLDLSDNLLSGHFPTKVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGM 505
           L ++T    LDLS N L    P  +  L+ L  L  S N     +   +     L+ L +
Sbjct: 462 LLLVTH---LDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVDG-VANLPRLQELLL 515

Query: 506 QDNSFT-ISIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLL 549
            +N     +    L S   +  L+L  N+L        E L+ +L
Sbjct: 516 CNNRLQQSAAIQPLVSCPRLVLLNLQGNSLC-QEEGIQERLAEML 559

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 56.3 bits (135), Expect = 1e-08
 Identities = 25/129 (19%), Positives = 54/129 (41%), Gaps = 8/129 (6%)

Query: 15  WNNSINLCQWTGVTCGHRRQRVTGLDLRHQSVGGVLSPFVGNLNFLRSINLPNNSFRGKI 74
              S  L + + +   +   RV  L L H+ +  +    +  L  +  ++L +N  R  +
Sbjct: 424 DLRSKFLLENSVLKMEYADVRV--LHLAHKDLTVL--CHLEQLLLVTHLDLSHNRLR-AL 478

Query: 75  PHEVGNLFRLQNLTLTNNYFLGKILTDLSHCSNLMKFEASNNKLEG-EIPVKISNLLMLQ 133
           P  +  L  L+ L  ++N    + +  +++   L +    NN+L+       + +   L 
Sbjct: 479 PPALAALRCLEVLQASDNAL--ENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLV 536

Query: 134 ILNIAENHL 142
           +LN+  N L
Sbjct: 537 LLNLQGNSL 545

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 52.5 bits (125), Expect = 3e-07
 Identities = 29/200 (14%), Positives = 59/200 (29%), Gaps = 10/200 (5%)

Query: 360 VESNQLAGTIPLAIGELKSIQILFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPP 419
           V                + +    L+       + S L +   L +L  E       I  
Sbjct: 332 VLLKDRPECWCRDSATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIIL 390

Query: 420 SNGNCQNLILLTTRKNKLSGIVPRQLLRIITLSVLLDLSDNLLSGHFPTKVGNLKNLVSL 479
                  L+         S +     +R   L    D   +              ++  L
Sbjct: 391 LMRALDPLLYEKETLQYFSTLKAVDPMRAAYL----DDLRSKFLLENSVLKMEYADVRVL 446

Query: 480 DISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTISIPSTLSSLKSITELDLSRNNLSGHIP 539
            ++    +  +   L     + +L +  N    ++P  L++L+ +  L  S N L  ++ 
Sbjct: 447 HLAHKDLT-VLCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVD 502

Query: 540 QYLENLSFLLFLNMSYNHFE 559
             + NL  L  L +  N  +
Sbjct: 503 G-VANLPRLQELLLCNNRLQ 521

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 49.8 bits (118), Expect = 2e-06
 Identities = 40/303 (13%), Positives = 84/303 (27%), Gaps = 55/303 (18%)

Query: 60  LRSINLPNNSFRGKIPHEVGNLFRLQNLTLTNNYFLGKILTDLSHCSNLMKFEASNNKLE 119
           L + +L +   +             +   L  +        D +    L + E S  K  
Sbjct: 304 LPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCR-DSATDEQLFRCELSVEKST 362

Query: 120 GEIPVKISNLLMLQILNIAENHLKGQL---PASIGNLSALQEIDVRGNRLGGRIPSTISH 176
             +  ++ +   LQ L          +     ++  L   +E     + L    P   ++
Sbjct: 363 -VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAY 421

Query: 177 VRNLISFNVAYNQFSGMIPPIYNISSLQYIFIHTNRFHGSVPLDNGVNLPNLRYFSISGN 236
           + +L S  +  N    M      +  L +  +          L +   L  + +  +S N
Sbjct: 422 LDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTV--------LCHLEQLLLVTHLDLSHN 473

Query: 237 NLTGSLQDSLSNATNLQGLEINRNLFSGKVSINFSRLQNLSRLNLGENNLGTGTTNDLDF 296
            L                           +    + L+ L  L   +N L          
Sbjct: 474 RLR-------------------------ALPPALAALRCLEVLQASDNALEN-------- 500

Query: 297 ITLLTNCTKLEVLDLHSNR---FGGVLPFS-LANLSTTMTEIAIGSNQISDTIPDVIANL 352
           +  + N  +L+ L L +NR      + P      L      + +  N +      +   L
Sbjct: 501 VDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRL----VLLNLQGNSLCQ-EEGIQERL 555

Query: 353 VNL 355
             +
Sbjct: 556 AEM 558

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 62.0 bits (151), Expect = 6e-11
 Identities = 47/270 (17%), Positives = 95/270 (35%), Gaps = 36/270 (13%)

Query: 224 NLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINRNLFSGKVSI-NFSRLQNLSRLNLG 282
            L N    ++   ++T     S    + +Q    + +      S+       NL  L+L 
Sbjct: 17  GLANAVKQNLGKQSVTD--LVSQKELSGVQNFNGDNSNIQ---SLAGMQFFTNLKELHLS 71

Query: 283 ENNLGTGTTNDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQIS 342
            N +          ++ L + TKLE L ++ NR   +     A L    + + + +N++ 
Sbjct: 72  HNQISD--------LSPLKDLTKLEELSVNRNRLKNLNGIPSACL----SRLFLDNNELR 119

Query: 343 DTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSIQILFLNENFLRGTIPSSLGNLTL 402
           DT    + +L NL  L + +N+L   + L    L  +++L L+ N +  T    L  L  
Sbjct: 120 DTDS--LIHLKNLEILSIRNNKLKSIVMLG--FLSKLEVLDLHGNEI--TNTGGLTRLKK 173

Query: 403 LTQLILEVNNLQGKIPPSNGNCQNLILLTTRKNKLSGIVPRQLLRIITLSVLLDLSDNLL 462
           +  + L        +         L +  T K+     +         +S      D  +
Sbjct: 174 VNWIDLTGQKC---VNEPVKYQPELYITNTVKDPDGRWIS-----PYYISNGGSYVDGCV 225

Query: 463 SGHFPTKVGNL----KNLVSLDISSNMFSG 488
               P     +       +++  +  +F G
Sbjct: 226 LWELPVYTDEVSYKFSEYINVGETEAIFDG 255

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 61.6 bits (150), Expect = 9e-11
 Identities = 43/211 (20%), Positives = 75/211 (35%), Gaps = 18/211 (8%)

Query: 338 SNQISDTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSIQILFLNENFLRGTIPSSL 397
              I+   PD    L N     +    +   +     EL  +Q    + + +     + +
Sbjct: 6   PTPINQVFPD--PGLANAVKQNLGKQSVTDLVSQK--ELSGVQNFNGDNSNI--QSLAGM 59

Query: 398 GNLTLLTQLILEVNNLQGKIPPSNGNCQNLILLTTRKNKLSGIVPRQLLRIITLSVLLDL 457
              T L +L L  N +   + P   +   L  L+  +N+L  +       +  L     L
Sbjct: 60  QFFTNLKELHLSHNQIS-DLSPLK-DLTKLEELSVNRNRLKNLNGIPSACLSRL----FL 113

Query: 458 SDNLLSGHFPTKVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTISIPST 517
            +N L       + +LKNL  L I +N     +   LG  + LE L +  N   I+    
Sbjct: 114 DNNELRD--TDSLIHLKNLEILSIRNNKLKSIVM--LGFLSKLEVLDLHGNE--ITNTGG 167

Query: 518 LSSLKSITELDLSRNNLSGHIPQYLENLSFL 548
           L+ LK +  +DL+         +Y   L   
Sbjct: 168 LTRLKKVNWIDLTGQKCVNEPVKYQPELYIT 198

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 53.5 bits (129), Expect = 4e-08
 Identities = 48/280 (17%), Positives = 88/280 (31%), Gaps = 56/280 (20%)

Query: 269 NFSRLQNLSRLNLGENNLGTGTTNDLDFITLLTNCTKLEVLDLHSNRFGGVLPFS-LANL 327
               L N  + NLG+ ++          +      + ++  +  ++    +       NL
Sbjct: 14  PDPGLANAVKQNLGKQSVTD--------LVSQKELSGVQNFNGDNSNIQSLAGMQFFTNL 65

Query: 328 STTMTEIAIGSNQISDTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSIQILFLNEN 387
                E+ +  NQISD  P  + +L  L  L V  N+L     +       +  LFL+ N
Sbjct: 66  ----KELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKNLNGI---PSACLSRLFLDNN 116

Query: 388 FLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSNGNCQNLILLTTRKNKLSGIVPRQLLR 447
            L      SL +L  L  L +  N L+  I    G    L +L    N+++         
Sbjct: 117 EL--RDTDSLIHLKNLEILSIRNNKLK-SIVM-LGFLSKLEVLDLHGNEITNTGG----- 167

Query: 448 IITLSVLLDLSDNLLSGHFPTKVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQD 507
                                 +  LK +  +D++      E             +   D
Sbjct: 168 ----------------------LTRLKKVNWIDLTGQKCVNEPVKYQPELYITNTVKDPD 205

Query: 508 NSFTISIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSF 547
                  P  +S+  S  +  +         P Y + +S+
Sbjct: 206 G--RWISPYYISNGGSYVDGCVLWEL-----PVYTDEVSY 238

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 48.5 bits (116), Expect = 2e-06
 Identities = 35/212 (16%), Positives = 81/212 (38%), Gaps = 18/212 (8%)

Query: 99  LTDLSHCSNLMKFEASNNKLEGEIPVKISNLLMLQILNIAENHLKGQLPASIGNLSALQE 158
           +      +N +K       +   +      L  +Q  N   ++++    A +   + L+E
Sbjct: 12  VFPDPGLANAVKQNLGKQSVTDLVS--QKELSGVQNFNGDNSNIQS--LAGMQFFTNLKE 67

Query: 159 IDVRGNRLGGRIPSTISHVRNLISFNVAYNQFSGMIPPIYNISSLQYIFIHTNRFHGSVP 218
           + +  N++     S +  +  L   +V  N+    +  I + + L  +F+  N    +  
Sbjct: 68  LHLSHNQI--SDLSPLKDLTKLEELSVNRNRLKN-LNGIPS-ACLSRLFLDNNELRDTDS 123

Query: 219 LDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINRNLFSGKVSINFSRLQNLSR 278
           L    +L NL   SI  N L  S+   L   + L+ L+++ N  +    +  +RL+ ++ 
Sbjct: 124 LI---HLKNLEILSIRNNKLK-SI-VMLGFLSKLEVLDLHGNEITNTGGL--TRLKKVNW 176

Query: 279 LNLGENNLGTGTTNDLDFITLLTNCTKLEVLD 310
           ++L            + +   L     ++  D
Sbjct: 177 IDLTGQKC---VNEPVKYQPELYITNTVKDPD 205

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 48.1 bits (115), Expect = 3e-06
 Identities = 32/211 (15%), Positives = 71/211 (33%), Gaps = 22/211 (10%)

Query: 80  NLFRLQNLTLTNNYFLGKILTDLSHCSNLMKFEASNNKLEGEIPVKISNLLMLQILNIAE 139
            L       L         L      S +  F   N+ ++      +     L+ L+++ 
Sbjct: 17  GLANAVKQNLGKQSV--TDLVSQKELSGVQNFNGDNSNIQSLAG--MQFFTNLKELHLSH 72

Query: 140 NHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVR--NLISFNVAYNQFSGMIPPI 197
           N +     + + +L+ L+E+ V  NRL       ++ +    L    +  N+       +
Sbjct: 73  NQISD--LSPLKDLTKLEELSVNRNRL-----KNLNGIPSACLSRLFLDNNELRD-TDSL 124

Query: 198 YNISSLQYIFIHTNRFHGSVPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEI 257
            ++ +L+ + I  N+    V L     L  L    + GN +T +    L+    +  +++
Sbjct: 125 IHLKNLEILSIRNNKLKSIVMLGF---LSKLEVLDLHGNEITNT--GGLTRLKKVNWIDL 179

Query: 258 NRNLFSGKVSINFSRLQNLSRLNLGENNLGT 288
                    +        L   N  ++  G 
Sbjct: 180 TGQKCV---NEPVKYQPELYITNTVKDPDGR 207

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 64.1 bits (155), Expect = 8e-11
 Identities = 69/430 (16%), Positives = 136/430 (31%), Gaps = 129/430 (30%)

Query: 171 PSTISHVRNLISF-----NVAYNQFSGMIPPIYNISSLQ--YIFIHTNRFHGSVPLDNGV 223
              +S    L             +F            L+  Y F+  +            
Sbjct: 58  KDAVSGTLRLFWTLLSKQEEMVQKFVE--------EVLRINYKFL-MSPIKTE---QRQP 105

Query: 224 NLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINRNLFSGKVSIN----FSRLQN-LSR 278
           ++    Y     + L    Q                 +F+ K +++    + +L+  L  
Sbjct: 106 SMMTRMYIE-QRDRLYNDNQ-----------------VFA-KYNVSRLQPYLKLRQALLE 146

Query: 279 LNLGEN-----NLGTGTTNDLDFITLLTNCTKLEVL---DLHSNRFGGVLPFSLANLSTT 330
           L   +N      LG+G T        +     L+V     +       +   +L N ++ 
Sbjct: 147 LRPAKNVLIDGVLGSGKT-------WVA----LDVCLSYKVQCKMDFKIFWLNLKNCNSP 195

Query: 331 MTEIAIGSNQISDTIPDVIANLVNLNALGVESNQLAG-----TIPLAIGELKS-IQILFL 384
                            V+  L  L    ++ N  +       I L I  +++ ++ L  
Sbjct: 196 E---------------TVLEMLQKLLYQ-IDPNWTSRSDHSSNIKLRIHSIQAELRRLLK 239

Query: 385 NENFLRGTIPSSLGNLTLLTQLIL-EVNNLQGKIPPSNGNCQNLILLTTRK----NKLSG 439
           ++ +      + L        L+L  V N +      N +C+  ILLTTR     + LS 
Sbjct: 240 SKPY-----ENCL--------LVLLNVQNAK-AWNAFNLSCK--ILLTTRFKQVTDFLSA 283

Query: 440 IVPRQL-LRIITLSVLLDLSDNLLSGHFPTKVGNLKNLVS----LDISSNMFSGEIPTTL 494
                + L   ++++  D   +LL  +   +  +L   V       +S  + +  I    
Sbjct: 284 ATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLS--IIAESIRD-- 339

Query: 495 GGCTSLEYLGMQDNSFTISIPSTLSSLKSITEL-----DLS--RNNLSGHIP-QYLENLS 546
           G  T   +  +  +  T  I S+L+ L+   E       LS    +   HIP   L    
Sbjct: 340 GLATWDNWKHVNCDKLTTIIESSLNVLEP-AEYRKMFDRLSVFPPSA--HIPTILLS--- 393

Query: 547 FLLFLNMSYN 556
            L++ ++  +
Sbjct: 394 -LIWFDVIKS 402

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 61.1 bits (149), Expect = 2e-10
 Identities = 39/214 (18%), Positives = 71/214 (33%), Gaps = 9/214 (4%)

Query: 325 ANLSTTMTEIAIGSNQISDTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSIQILFL 384
            NL  +   + +  N +         +   L  L +   ++      A   L  +  L L
Sbjct: 24  DNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLIL 83

Query: 385 NENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSN-GNCQNLILLTTRKNKLSGIVPR 443
             N ++     +   L+ L +L+    NL   +     G+ + L  L    N +      
Sbjct: 84  TGNPIQSLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLP 142

Query: 444 QLLRIITLSVLLDLSDNLLS----GHFPTKVGNLKNL-VSLDISSNMFSGEIPTTLGGCT 498
           +    +T    LDLS N +           +  +  L +SLD+S N  +  I        
Sbjct: 143 EYFSNLTNLEHLDLSSNKIQSIYCTDL-RVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEI 200

Query: 499 SLEYLGMQDNSFTISIPSTLSSLKSITELDLSRN 532
            L+ L +  N            L S+ ++ L  N
Sbjct: 201 RLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 60.4 bits (147), Expect = 3e-10
 Identities = 42/186 (22%), Positives = 65/186 (34%), Gaps = 32/186 (17%)

Query: 378 SIQILFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSNGNCQNLILLTTRKNKL 437
           S + L L+ N LR     S  +   L  L L    +Q  I    G  Q+L  L+T     
Sbjct: 29  STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIED--GAYQSLSHLST----- 80

Query: 438 SGIVPRQLLRIITLSVLLDLSDNLLSGHFPTKVGNLKNLVSLDISSNMFSGEIPTTLGGC 497
                            L L+ N +          L +L  L       +      +G  
Sbjct: 81  -----------------LILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHL 123

Query: 498 TSLEYLGMQDNSFT-ISIPSTLSSLKSITELDLSRNNLSGHIP----QYLENLSFL-LFL 551
            +L+ L +  N      +P   S+L ++  LDLS N +   I     + L  +  L L L
Sbjct: 124 KTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLSL 182

Query: 552 NMSYNH 557
           ++S N 
Sbjct: 183 DLSLNP 188

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 58.8 bits (143), Expect = 9e-10
 Identities = 43/212 (20%), Positives = 83/212 (39%), Gaps = 11/212 (5%)

Query: 156 LQEIDVRGNRLGGRIPSTISHVRNLISFNVAYNQFSGMIPP--IYNISSLQYIFIHTNRF 213
            + +D+  N L      +      L   +++  +    I      ++S L  + +  N  
Sbjct: 30  TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPI 88

Query: 214 HGSVPLDNGVNLPNLRYFSISGNNLTGSLQDSL-SNATNLQGLEINRN-LFSGKVSINFS 271
             S+ L     L +L+       NL  SL++    +   L+ L +  N + S K+   FS
Sbjct: 89  Q-SLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFS 146

Query: 272 RLQNLSRLNLGENNLGTGTTNDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSTTM 331
            L NL  L+L  N + +    DL  +  +        LDL  N    + P +   +   +
Sbjct: 147 NLTNLEHLDLSSNKIQSIYCTDLRVLHQMP--LLNLSLDLSLNPMNFIQPGAFKEIR--L 202

Query: 332 TEIAIGSNQISDTIPDVIANLVNLNALGVESN 363
            E+A+ +NQ+      +   L +L  + + +N
Sbjct: 203 KELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 47.3 bits (113), Expect = 5e-06
 Identities = 42/236 (17%), Positives = 86/236 (36%), Gaps = 42/236 (17%)

Query: 60  LRSINLPNNSFRGKIPHEV-GNLFRLQNLTLTNNYFLGKILTDL-----SHCSNLMKFEA 113
            ++++L  N  R  +      +   LQ L L+        +  +        S+L     
Sbjct: 30  TKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRC-----EIQTIEDGAYQSLSHLSTLIL 83

Query: 114 SNNKLEGEIPVKI-SNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPS 172
           + N ++  + +   S L  LQ L   E +L       IG+L  L+E++V  N +      
Sbjct: 84  TGNPIQ-SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLI------ 136

Query: 173 TISHVRNLISFNVAYNQFSGMIPPIYNISSLQYIFIHTNRFHGSVPLDNGVNLPNLRYF- 231
                ++          FS +       ++L+++ + +N+   S+   +   L  +    
Sbjct: 137 -----QSFKLPEY----FSNL-------TNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLN 179

Query: 232 ---SISGNNLTGSLQDSLSNATNLQGLEINRNLFSGKVSINFSRLQNLSRLNLGEN 284
               +S N +   +Q        L+ L ++ N         F RL +L ++ L  N
Sbjct: 180 LSLDLSLNPMN-FIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 61.0 bits (148), Expect = 3e-10
 Identities = 41/218 (18%), Positives = 70/218 (32%), Gaps = 9/218 (4%)

Query: 344 TIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSIQILFLNENFLRGTIPSS-LGNLTL 402
            IP  +    N   L     +L      A      ++ + +++N +   I +    NL  
Sbjct: 23  EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPK 80

Query: 403 LTQLILEVNNLQGKIPPSN-GNCQNLILLTTRKNKLSGIVPRQLLRIITLSVLLDLSDNL 461
           L ++ +E  N    I P    N  NL  L      +  +     +  +   +L D+ DN+
Sbjct: 81  LHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLL-DIQDNI 139

Query: 462 LSGHFPTKV--GNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTISIPSTLS 519
                      G     V L ++ N       +   G    E     +N+          
Sbjct: 140 NIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFH 199

Query: 520 SLKSITELDLSRNNLSGHIPQY-LENLSFLLFLNMSYN 556
                  LD+SR  +   +P Y LENL  L   +    
Sbjct: 200 GASGPVILDISRTRIH-SLPSYGLENLKKLRARSTYNL 236

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 59.1 bits (143), Expect = 1e-09
 Identities = 40/238 (16%), Positives = 73/238 (30%), Gaps = 17/238 (7%)

Query: 156 LQEIDVRGNRLGGRIPSTISHVRNLISFNVAYNQFSGMIPP--IYNISSLQYIFI-HTNR 212
             E+     +L        S   +L    ++ N    +I      N+  L  I I   N 
Sbjct: 32  AIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANN 91

Query: 213 FHGSVPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINRNLFSGKVSIN-FS 271
               +  +   NLPNL+Y  IS   +         ++     L+I  N+    +  N F 
Sbjct: 92  LL-YINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFV 150

Query: 272 RLQNLSR-LNLGENNLGTGTTNDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSTT 330
            L   S  L L +N +     +              E+    +N    +         + 
Sbjct: 151 GLSFESVILWLNKNGIQEIHNS------AFNGTQLDELNLSDNNNLEELPNDVFHGA-SG 203

Query: 331 MTEIAIGSNQISDTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSIQILFLNENF 388
              + I   +I       + NL  L A    + +    +P  + +L ++    L    
Sbjct: 204 PVILDISRTRIHSLPSYGLENLKKLRARSTYNLK---KLP-TLEKLVALMEASLTYPS 257

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 46.4 bits (110), Expect = 1e-05
 Identities = 34/226 (15%), Positives = 60/226 (26%), Gaps = 8/226 (3%)

Query: 60  LRSINLPNNSFRGKIPHEVGNLFRLQNLTLTNNYFLGKILTD-LSHCSNLMKFEASNNKL 118
              +       R            L+ + ++ N  L  I  D  S+   L +        
Sbjct: 32  AIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANN 91

Query: 119 EGEIPVKI-SNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTI--S 175
              I  +   NL  LQ L I+   +K        +      +D++ N     I       
Sbjct: 92  LLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVG 151

Query: 176 HVRNLISFNVAYNQFSGMIPPIYNISSLQYIFIHTNRFHGSVPLDNGVNLPNLRYFSISG 235
                +   +  N    +    +N + L  + +  N     +P D            IS 
Sbjct: 152 LSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISR 211

Query: 236 NNLTGSLQDSLSNATNLQGLEINRNLFSGKVSINFSRLQNLSRLNL 281
             +       L N   L+           K      +L  L   +L
Sbjct: 212 TRIHSLPSYGLENLKKLRARSTYNL----KKLPTLEKLVALMEASL 253

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 57.4 bits (139), Expect = 5e-09
 Identities = 51/317 (16%), Positives = 92/317 (29%), Gaps = 60/317 (18%)

Query: 269 NFSRLQNLSRLNLGENNLGTGTTNDLDFITLLTNCTKLEVLDLHSNRFGG----VLPFSL 324
            FS    +   +L  + + T     +    +L     ++ + L  N  G      L  ++
Sbjct: 3   RFS----IEGKSLKLDAITTEDEKSV--FAVLLEDDSVKEIVLSGNTIGTEAARWLSENI 56

Query: 325 ANLSTTMTEIAIGSNQISDTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSIQILFL 384
           A+    +               ++   L  L                A+ +   +  + L
Sbjct: 57  AS-KKDLEIAEFSDIFTGRVKDEIPEALRLLLQ--------------ALLKCPKLHTVRL 101

Query: 385 NENFLRGT----IPSSLGNLTLLTQLILEVNNLQGKIPPSNGNCQNLILLTTRKNKLSGI 440
           ++N    T    +   L   T L  L L  N L             +             
Sbjct: 102 SDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGL------GPQAGAKIARALQELAVNKKA 155

Query: 441 VPRQLLRIITLSVLLDLSDNLLSG----HFPTKVGNLKNLVSLDISSNMFSGE-----IP 491
                LR       +    N L       +     + + L ++ +  N    E     + 
Sbjct: 156 KNAPPLRS------IICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLL 209

Query: 492 TTLGGCTSLEYLGMQDNSFT----ISIPSTLSSLKSITELDLSRNNLSG----HIPQYLE 543
             L  C  L+ L +QDN+FT     ++   L S  ++ EL L+   LS      +     
Sbjct: 210 EGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFS 269

Query: 544 NLSF--LLFLNMSYNHF 558
            L    L  L + YN  
Sbjct: 270 KLENIGLQTLRLQYNEI 286

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 54.7 bits (132), Expect = 4e-08
 Identities = 46/313 (14%), Positives = 91/313 (29%), Gaps = 54/313 (17%)

Query: 84  LQNLTLTNNYF----LGKILTDLSHCSNLMKFEASNNKLE-------GEIPVKISNLLML 132
           ++  +L  +         +   L    ++ +   S N +         E      +L + 
Sbjct: 6   IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIA 65

Query: 133 QILNIAENHLKGQLPASIGNLSA-------LQEIDVRGNRLGGR----IPSTISHVRNLI 181
           +  +I    +K ++P ++  L         L  + +  N  G      +   +S    L 
Sbjct: 66  EFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLE 125

Query: 182 SFNVAYNQFS--------------GMIPPIYNISSLQYIFIHTNRFH--GSVPLDNGV-N 224
              +  N                  +     N   L+ I    NR              +
Sbjct: 126 HLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQS 185

Query: 225 LPNLRYFSISGNNLT-----GSLQDSLSNATNLQGLEINRNLFSGKVSINFSR----LQN 275
              L    +  N +        L + L+    L+ L++  N F+   S   +       N
Sbjct: 186 HRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPN 245

Query: 276 LSRLNLGENNLGT-GTTNDLDFITLLTNCTKLEVLDLHSNRFGG----VLPFSLANLSTT 330
           L  L L +  L   G    +D  + L N   L+ L L  N         L   +      
Sbjct: 246 LRELGLNDCLLSARGAAAVVDAFSKLENIG-LQTLRLQYNEIELDAVRTLKTVIDEKMPD 304

Query: 331 MTEIAIGSNQISD 343
           +  + +  N+ S+
Sbjct: 305 LLFLELNGNRFSE 317

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 49.7 bits (119), Expect = 1e-06
 Identities = 49/338 (14%), Positives = 109/338 (32%), Gaps = 65/338 (19%)

Query: 232 SISGNNLTG----SLQDSLSNATNLQGLEINRNLFSGK----VSINFSRLQNLSRLNLGE 283
           S+  + +T     S+   L    +++ + ++ N    +    +S N +  ++L      +
Sbjct: 10  SLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSD 69

Query: 284 NNLGTGTTNDLD----FITLLTNCTKLEVLDLHSNRFG--GVLPFSLA-NLSTTMTEIAI 336
              G       +     +  L  C KL  + L  N FG     P     +  T +  + +
Sbjct: 70  IFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYL 129

Query: 337 GSNQISDTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSIQILFLNENFLRG----T 392
            +N +       IA  +   A+  ++                ++ +    N L       
Sbjct: 130 HNNGLGPQAGAKIARALQELAVNKKAKNA-----------PPLRSIICGRNRLENGSMKE 178

Query: 393 IPSSLGNLTLLTQLILEVNNLQGKIPPSNGNCQNLILLTTRKNKLSGIVPRQLLRIITLS 452
              +  +  LL  + +  N ++ +        ++L+L      +              L 
Sbjct: 179 WAKTFQSHRLLHTVKMVQNGIRPE------GIEHLLLEGLAYCQ-------------ELK 219

Query: 453 VLLDLSDNLLSG----HFPTKVGNLKNLVSLDISSNMFSGE----IPTTLGGC--TSLEY 502
           VL DL DN  +          + +  NL  L ++  + S      +           L+ 
Sbjct: 220 VL-DLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQT 278

Query: 503 LGMQDNSFT----ISIPSTL-SSLKSITELDLSRNNLS 535
           L +Q N        ++ + +   +  +  L+L+ N  S
Sbjct: 279 LRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS 316

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 48.9 bits (117), Expect = 2e-06
 Identities = 46/308 (14%), Positives = 98/308 (31%), Gaps = 65/308 (21%)

Query: 224 NLPNLRYFSISGNNLTG----SLQDSLSNATNLQGLEINRNLFSGKVSIN---------- 269
              +++   +SGN +       L +++++  +L+  E +                     
Sbjct: 30  EDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQA 89

Query: 270 FSRLQNLSRLNLGENNLGTGTTNDLDFITLLTNCTKLEVLDLHSNRFG------------ 317
             +   L  + L +N  G      L  I  L+  T LE L LH+N  G            
Sbjct: 90  LLKCPKLHTVRLSDNAFGPTAQEPL--IDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQ 147

Query: 318 GVLPFSLANLSTTMTEIAIGSNQISD----TIPDVIANLVNLNALGVESNQL-----AGT 368
            +     A  +  +  I  G N++ +           +   L+ + +  N +        
Sbjct: 148 ELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHL 207

Query: 369 IPLAIGELKSIQILFLNENFLRGT----IPSSLGNLTLLTQLILEVNNLQGKIPPSNGNC 424
           +   +   + +++L L +N         +  +L +   L +L L    L  +     G  
Sbjct: 208 LLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSAR-----GAA 262

Query: 425 QNLILLTTRKNKLSGIVPRQLLRIITLSVLLDLSDNLLSGHFPTKVG-----NLKNLVSL 479
             +   +  +N               L  L  L  N +       +       + +L+ L
Sbjct: 263 AVVDAFSKLENI-------------GLQTL-RLQYNEIELDAVRTLKTVIDEKMPDLLFL 308

Query: 480 DISSNMFS 487
           +++ N FS
Sbjct: 309 ELNGNRFS 316

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 46.6 bits (111), Expect = 1e-05
 Identities = 51/316 (16%), Positives = 96/316 (30%), Gaps = 77/316 (24%)

Query: 150 IGNLSALQEIDVRGNRLGGR----IPSTISHVRNLISFNVAYNQF--------SGMIPPI 197
           +   S ++   ++ + +       + + +    ++    ++ N          S  I   
Sbjct: 1   MARFS-IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASK 59

Query: 198 YNISSLQYIFIHTNRFHGSVPLDNGV------NLPNLRYFSISGNNLTG----SLQDSLS 247
            ++   ++  I T R    +P    +        P L    +S N         L D LS
Sbjct: 60  KDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLS 119

Query: 248 NATNLQGLEINRN-------------LFSGKVSINFSRLQNLSRLNLGENNLGTGTTNDL 294
             T L+ L ++ N             L    V+        L  +  G N L  G+  + 
Sbjct: 120 KHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEW 179

Query: 295 -----DFITL----------------------LTNCTKLEVLDLHSNRFGGVLPFSLANL 327
                    L                      L  C +L+VLDL  N F  +   +LA  
Sbjct: 180 AKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIA 239

Query: 328 ---STTMTEIAIGSNQISDT----IPDVIANLVN--LNALGVESNQLAGTIPLAIGE--- 375
                 + E+ +    +S      + D  + L N  L  L ++ N++       +     
Sbjct: 240 LKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVID 299

Query: 376 --LKSIQILFLNENFL 389
             +  +  L LN N  
Sbjct: 300 EKMPDLLFLELNGNRF 315

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 43.9 bits (104), Expect = 1e-04
 Identities = 52/333 (15%), Positives = 95/333 (28%), Gaps = 73/333 (21%)

Query: 36  VTGLDLRHQSVGGV----LSPFVGNLNFLRSINLPNNSFRGKIPHEVGNLFR----LQNL 87
           + G  L+  ++       +   +   + ++ I L  N+   +    +         L+  
Sbjct: 6   IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIA 65

Query: 88  TLTNNYF----------LGKILTDLSHCSNLMKFEASNNKLEGEIPVKISNLLM----LQ 133
             ++ +           L  +L  L  C  L     S+N         + + L     L+
Sbjct: 66  EFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLE 125

Query: 134 ILNIAENHL-------------KGQLPASIGNLSALQEIDVRGNRLGGR----IPSTISH 176
            L +  N L             +  +     N   L+ I    NRL          T   
Sbjct: 126 HLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQS 185

Query: 177 VRNLISFNVAYNQFS--GMIPPIYNISSLQYIFIHTNRFHGSVPLDNGVNLPNLRYFSIS 234
            R L +  +  N     G+   +  +  L                        L+   + 
Sbjct: 186 HRLLHTVKMVQNGIRPEGIEHLL--LEGLA-------------------YCQELKVLDLQ 224

Query: 235 GNNLTG----SLQDSLSNATNLQGLEINRNLFSGKVSINFSRL------QNLSRLNLGEN 284
            N  T     +L  +L +  NL+ L +N  L S + +              L  L L  N
Sbjct: 225 DNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYN 284

Query: 285 NLGTGTTNDLDFITLLTNCTKLEVLDLHSNRFG 317
            +       L    +      L  L+L+ NRF 
Sbjct: 285 EIELDAVRTLKT-VIDEKMPDLLFLELNGNRFS 316

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 55.4 bits (134), Expect = 7e-09
 Identities = 47/260 (18%), Positives = 88/260 (33%), Gaps = 39/260 (15%)

Query: 104 HCSNLMKFEASNNKLEGEIPVKISNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRG 163
            C     F  +   ++  IP    +    Q L + E HL+     +  NL  +  I V  
Sbjct: 9   ECHQEEDFRVTCKDIQ-RIPSLPPST---QTLKLIETHLRTIPSHAFSNLPNISRIYVSI 64

Query: 164 NRLGGRIPSTISHVRNLISFNVAYNQFSGMIPPIYNISSLQYIFIHTNRFHGSVPLDNGV 223
           +    ++ S               + F  +       S + +I I   R    +  D   
Sbjct: 65  DVTLQQLES---------------HSFYNL-------SKVTHIEIRNTRNLTYIDPDALK 102

Query: 224 NLPNLRYFSISGNNLTGSLQD--SLSNATNLQGLEINRNLFSGKVSIN-FSRLQNLSR-L 279
            LP L++  I    L     D   + +      LEI  N +   + +N F  L N +  L
Sbjct: 103 ELPLLKFLGIFNTGLK-MFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTL 161

Query: 280 NLGENNLGTGTTNDLDFITLLTNCTKLEVLDLHSNRFGGVLP-FSLANLSTTMTEIAIGS 338
            L  N   +             N TKL+ + L+ N++  V+   +   + +  + + +  
Sbjct: 162 KLYNNGFTSVQGYAF-------NGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQ 214

Query: 339 NQISDTIPDVIANLVNLNAL 358
             ++      + +L  L A 
Sbjct: 215 TSVTALPSKGLEHLKELIAR 234

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 52.3 bits (126), Expect = 9e-08
 Identities = 30/218 (13%), Positives = 74/218 (33%), Gaps = 18/218 (8%)

Query: 225 LPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINRNLFSGKVSIN-FSRLQNLSRLNLGE 283
            P+ +   +   +L      + SN  N+  + ++ ++   ++  + F  L  ++ + +  
Sbjct: 30  PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRN 89

Query: 284 NNLGTGTTNDLDFI--TLLTNCTKLEVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQI 341
                    +L +I    L     L+ L + +         +    +     + I  N  
Sbjct: 90  TR-------NLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPY 142

Query: 342 SDTIP-DVIANLVN-LNALGVESNQLAGTIPLAIGELKSIQILFLNENFLRGTIPSSL-- 397
             +IP +    L N    L + +N    ++         +  ++LN+N     I      
Sbjct: 143 MTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFG 201

Query: 398 GNLTLLTQLILEVNNLQGKIPPSNGNCQNLILLTTRKN 435
           G  +  + L +   ++   +P      ++L  L  R  
Sbjct: 202 GVYSGPSLLDVSQTSVT-ALPS--KGLEHLKELIARNT 236

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 51.9 bits (125), Expect = 1e-07
 Identities = 38/257 (14%), Positives = 84/257 (32%), Gaps = 38/257 (14%)

Query: 303 CTKLEVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQISDTIPDVIANLVNLNALGVES 362
           C + E   +            + +L  +   + +    +        +NL N+       
Sbjct: 10  CHQEEDFRVTCKDIQ-----RIPSLPPSTQTLKLIETHLRTIPSHAFSNLPNI------- 57

Query: 363 NQLAGTIPLAIGELKSIQILFLNENFLRGTIPS-SLGNLTLLTQLILEVNNLQGKIPPSN 421
                              ++++ +     + S S  NL+ +T + +        I P  
Sbjct: 58  -----------------SRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDA 100

Query: 422 -GNCQNLILLTTRKNKLSGIVPRQLLRIITLSVLLDLSDNLLSGHFPTKV--GNLKNLVS 478
                 L  L      L        +    +  +L+++DN      P     G     ++
Sbjct: 101 LKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLT 160

Query: 479 LDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTISIPS-TLSSLKS-ITELDLSRNNLSG 536
           L + +N F+  +       T L+ + +  N +   I       + S  + LD+S+ +++ 
Sbjct: 161 LKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT- 218

Query: 537 HIPQY-LENLSFLLFLN 552
            +P   LE+L  L+  N
Sbjct: 219 ALPSKGLEHLKELIARN 235

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 51.5 bits (124), Expect = 2e-07
 Identities = 38/186 (20%), Positives = 73/186 (39%), Gaps = 9/186 (4%)

Query: 378 SIQILFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSN-GNCQNLILLTTRKNK 436
           S Q L L E  LR     +  NL  ++++ + ++    ++   +  N   +  +  R  +
Sbjct: 32  STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTR 91

Query: 437 LSGIVPRQLLRIITLSVLLDLSDNLLSGHFP--TKVGNLKNLVSLDISSNMFSGEIPTTL 494
               +    L+ + L   L + +  L   FP  TKV +      L+I+ N +   IP   
Sbjct: 92  NLTYIDPDALKELPLLKFLGIFNTGLK-MFPDLTKVYSTDIFFILEITDNPYMTSIPVNA 150

Query: 495 --GGCTSLEYLGMQDNSFTISIPSTLSSLKSITELDLSRNNLSGHIPQY-LENL-SFLLF 550
             G C     L + +N FT S+     +   +  + L++N     I +     + S    
Sbjct: 151 FQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSL 209

Query: 551 LNMSYN 556
           L++S  
Sbjct: 210 LDVSQT 215

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 56.0 bits (135), Expect = 1e-08
 Identities = 40/191 (20%), Positives = 72/191 (37%), Gaps = 35/191 (18%)

Query: 226 PNLRYFSISGNNLTG-SLQDSLSNATNLQGLEINRNLFSGKVSIN---FSRLQNLSRLNL 281
                  +S NNL+    + + +  TNL  L ++ N  +    I+   F  + NL  L+L
Sbjct: 39  SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN---FISSEAFVPVPNLRYLDL 95

Query: 282 GENNLGTGTTNDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQI 341
             N+L T             +   LEVL L++N    V   +  ++   + ++ +  NQI
Sbjct: 96  SSNHLHTLDEFLFS------DLQALEVLLLYNNHIVVVDRNAFEDM-AQLQKLYLSQNQI 148

Query: 342 SDTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSIQILFLNENFLRGTIPSSLGNLT 401
           S    ++I +   L  L                      +L L+ N L+    + L  L 
Sbjct: 149 SRFPVELIKDGNKLPKL---------------------MLLDLSSNKLKKLPLTDLQKLP 187

Query: 402 LLTQLILEVNN 412
              +  L ++N
Sbjct: 188 AWVKNGLYLHN 198

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 54.5 bits (131), Expect = 4e-08
 Identities = 34/162 (20%), Positives = 61/162 (37%), Gaps = 5/162 (3%)

Query: 325 ANLSTTMTEIAIGSNQISDTIPDVI-ANLVNLNALGVESNQLAGTIPLAIGELKSIQILF 383
            +L +    + +  N +S    +     L NL++L +  N L      A   + +++ L 
Sbjct: 35  QSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLD 94

Query: 384 LNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSN-GNCQNLILLTTRKNKLSGIVP 442
           L+ N L         +L  L  L+L  N++   +  +   +   L  L   +N++S    
Sbjct: 95  LSSNHLHTLDEFLFSDLQALEVLLLYNNHIV-VVDRNAFEDMAQLQKLYLSQNQISRFPV 153

Query: 443 RQLLRIITLSVL--LDLSDNLLSGHFPTKVGNLKNLVSLDIS 482
             +     L  L  LDLS N L     T +  L   V   + 
Sbjct: 154 ELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLY 195

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 50.6 bits (121), Expect = 8e-07
 Identities = 39/173 (22%), Positives = 61/173 (35%), Gaps = 13/173 (7%)

Query: 392 TIPSSLGNLTLLTQLILEVNNLQGKIPPSN--GNCQNLILLTTRKNKLSGIVPRQLLRII 449
            +P SL + T    L L  NNL  ++          NL  L    N L+ I     + + 
Sbjct: 32  NVPQSLPSYT--ALLDLSHNNLS-RLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVP 88

Query: 450 TLSVLLDLSDNLLSGHFPTKV-GNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDN 508
            L  L DLS N L       +  +L+ L  L + +N               L+ L +  N
Sbjct: 89  NLRYL-DLSSNHLH-TLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQN 146

Query: 509 SFTISIP----STLSSLKSITELDLSRNNLSGHIPQYLENLSFLLFLNMSYNH 557
             +   P       + L  +  LDLS N L       L+ L   +   +  ++
Sbjct: 147 QIS-RFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHN 198

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 48.7 bits (116), Expect = 2e-06
 Identities = 33/168 (19%), Positives = 70/168 (41%), Gaps = 14/168 (8%)

Query: 156 LQEIDVRGNRLGGRIPSTI--SHVRNLISFNVAYNQFSGMIPP--IYNISSLQYIFIHTN 211
              +D+  N L  R+ +    + + NL S  +++N  +  I       + +L+Y+ + +N
Sbjct: 41  TALLDLSHNNLS-RLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLSSN 98

Query: 212 RFHGSVPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINRNL---FSGKVSI 268
             H ++      +L  L    +  N++    +++  +   LQ L +++N    F  ++  
Sbjct: 99  HLH-TLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIK 157

Query: 269 NFSRLQNLSRLNLGENNLGTGTTNDLDFITLLTNCTKLEVLDLHSNRF 316
           + ++L  L  L+L  N L      DL  +           L LH+N  
Sbjct: 158 DGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWV----KNGLYLHNNPL 201

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 40.6 bits (95), Expect = 9e-04
 Identities = 32/182 (17%), Positives = 68/182 (37%), Gaps = 34/182 (18%)

Query: 58  NFLRSINLPNNSFRGKIPHEVGNLFRLQNLTLTNNYFLGKILTD-LSHCSNLMKFEASNN 116
           N L  +     +           L  L +L L++N+ L  I ++      NL   + S+N
Sbjct: 49  NNLSRLR-AEWTPTR--------LTNLHSLLLSHNH-LNFISSEAFVPVPNLRYLDLSSN 98

Query: 117 KLEGEIPVKI-SNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTIS 175
            L   +   + S+L  L++L +  NH+      +  +++ LQ++ +  N++     S   
Sbjct: 99  HLH-TLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQI-----SRFP 152

Query: 176 HVRNLISFNVAYNQFSGMIPPIYNISSLQYIFIHTNRFHGSVPLDNGVNLPNLRYFSISG 235
                            +I     +  L  + + +N+    +PL +   LP      +  
Sbjct: 153 V---------------ELIKDGNKLPKLMLLDLSSNKLK-KLPLTDLQKLPAWVKNGLYL 196

Query: 236 NN 237
           +N
Sbjct: 197 HN 198

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 55.1 bits (133), Expect = 1e-08
 Identities = 44/166 (26%), Positives = 71/166 (42%), Gaps = 15/166 (9%)

Query: 250 TNLQGLEINRNLFSGKVSINFSRLQNLSRLNLGENNLGT---GTTNDLDFITLLTNCTKL 306
            + + L++     +      F  L  L+ LNL  N L T   G  +DL         T+L
Sbjct: 35  ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDL---------TEL 85

Query: 307 EVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQISDTIPDVIANLVNLNALGVESNQLA 366
             L L +N+    LP  + +  T + ++ +G NQ+      V   L  L  L + +NQL 
Sbjct: 86  GTLGLANNQL-ASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQ 144

Query: 367 GTIPL-AIGELKSIQILFLNENFLRGTIPSSLGNLTLLTQLILEVN 411
            +IP  A  +L ++Q L L+ N L+     +   L  L  + L  N
Sbjct: 145 -SIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 49.3 bits (118), Expect = 1e-06
 Identities = 32/108 (29%), Positives = 45/108 (41%), Gaps = 1/108 (0%)

Query: 307 EVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQISDTIPDVIANLVNLNALGVESNQLA 366
           E LDL S     +   +   L T +T + +  NQ+      V  +L  L  LG+ +NQLA
Sbjct: 38  EKLDLQSTGLATLSDATFRGL-TKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLA 96

Query: 367 GTIPLAIGELKSIQILFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQ 414
                    L  +  L+L  N L+         LT L +L L  N LQ
Sbjct: 97  SLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQ 144

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 44.7 bits (106), Expect = 3e-05
 Identities = 44/187 (23%), Positives = 67/187 (35%), Gaps = 14/187 (7%)

Query: 302 NCTKLEVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQISDTIPDVIANLVNLNALGVE 361
           N  K EV D        V P   + +     ++ + S  ++         L  L  L ++
Sbjct: 13  NEGKKEV-DCQGKSLDSV-P---SGIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLD 67

Query: 362 SNQLAGTIPLAIGELKSIQILFLNENFLRGTIPSSL-GNLTLLTQLILEVNNLQGKIPPS 420
            NQL         +L  +  L L  N L  ++P  +  +LT L +L L  N L+  +P  
Sbjct: 68  YNQLQTLSAGVFDDLTELGTLGLANNQLA-SLPLGVFDHLTQLDKLYLGGNQLK-SLPS- 124

Query: 421 NGNCQNLILLTT---RKNKLSGIVPRQLLRIITLSVLLDLSDNLLSGHFPTKVGNLKNLV 477
            G    L  L       N+L  I P      +T    L LS N L          L  L 
Sbjct: 125 -GVFDRLTKLKELRLNTNQLQSI-PAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQ 182

Query: 478 SLDISSN 484
           ++ +  N
Sbjct: 183 TITLFGN 189

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 51.9 bits (125), Expect = 2e-07
 Identities = 55/257 (21%), Positives = 90/257 (35%), Gaps = 58/257 (22%)

Query: 302 NCTKLEVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQISDTIPDVIANLVNLNALGVE 361
           N  K  V D  S +   + P   +N+     ++ + SN++S         L  L  L + 
Sbjct: 15  NNNKNSV-DCSSKKLTAI-P---SNIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLN 69

Query: 362 SNQLAGTIPLAI-GELKSIQILFLNENFLRGTIPSSL-GNLTLLTQLILEVNNLQGKIPP 419
            N+L  T+P  I  ELK+++ L++ +N L+  +P  +   L  L +L L+ N L+  +PP
Sbjct: 70  DNKLQ-TLPAGIFKELKNLETLWVTDNKLQ-ALPIGVFDQLVNLAELRLDRNQLK-SLPP 126

Query: 420 SNGNCQNLILLTTRKNKLSGIVPRQLLRIITLSVLLDLSDNLLSGHFPTKVGNLKNLVSL 479
                 +L  LT                       L L  N L                 
Sbjct: 127 --RVFDSLTKLTY----------------------LSLGYNELQ---------------- 146

Query: 480 DISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTISIPSTLSSLKSITELDLSRNNLSGHIP 539
            +   +F           TSL+ L + +N            L  +  L L  N L     
Sbjct: 147 SLPKGVFDK--------LTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPE 198

Query: 540 QYLENLSFLLFLNMSYN 556
              ++L  L  L +  N
Sbjct: 199 GAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 51.5 bits (124), Expect = 2e-07
 Identities = 42/168 (25%), Positives = 65/168 (38%), Gaps = 15/168 (8%)

Query: 224 NLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINRNLFSGKVSIN-FSRLQNLSRLNLG 282
            L  LR   ++ N L            NL+ L +  N     + I  F +L NL+ L L 
Sbjct: 59  RLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQ-ALPIGVFDQLVNLAELRLD 117

Query: 283 ENNLGT---GTTNDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSN 339
            N L +      + L         TKL  L L  N    +       L T++ E+ + +N
Sbjct: 118 RNQLKSLPPRVFDSL---------TKLTYLSLGYNELQSLPKGVFDKL-TSLKELRLYNN 167

Query: 340 QISDTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSIQILFLNEN 387
           Q+          L  L  L +++NQL      A   L+ +++L L EN
Sbjct: 168 QLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 49.6 bits (119), Expect = 1e-06
 Identities = 45/190 (23%), Positives = 76/190 (40%), Gaps = 20/190 (10%)

Query: 132 LQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTI-SHVRNLISFNVAYNQF 190
            + L++  N L      +   L+ L+ + +  N+L   +P+ I   ++NL +  V  N+ 
Sbjct: 39  TKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQT-LPAGIFKELKNLETLWVTDNKL 97

Query: 191 SGMIPP--IYNISSLQYIFIHTNRFHGSVPLDNGVNLPNLRYFSISGNNLTGSLQ----D 244
              +P      + +L  + +  N+   S+P     +L  L Y S+  N L  SL     D
Sbjct: 98  Q-ALPIGVFDQLVNLAELRLDRNQLK-SLPPRVFDSLTKLTYLSLGYNELQ-SLPKGVFD 154

Query: 245 SLSNATNLQGLEINRNLFSGKVSINFSRLQNLSRLNLGENNLGTGTTNDLDFITLLTNCT 304
            L   T+L+ L +  N         F +L  L  L L  N L        D      +  
Sbjct: 155 KL---TSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFD------SLE 205

Query: 305 KLEVLDLHSN 314
           KL++L L  N
Sbjct: 206 KLKMLQLQEN 215

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 50.5 bits (121), Expect = 3e-07
 Identities = 45/145 (31%), Positives = 64/145 (44%), Gaps = 22/145 (15%)

Query: 250 TNLQGLEINRNLFSGKVSINFSRLQNLSRLNLGENNLGT---GTTNDLDFITLLTNCTKL 306
           TN Q L ++ N  +      F  L NL  L LG N LG    G  + L         T+L
Sbjct: 40  TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSL---------TQL 90

Query: 307 EVLDLHSNRFGGVLP---F-SLANLSTTMTEIAIGSNQISDTIPDVIANLVNLNALGVES 362
            VLDL +N+   VLP   F  L +L     E+ +  N+++  +P  I  L +L  L ++ 
Sbjct: 91  TVLDLGTNQLT-VLPSAVFDRLVHL----KELFMCCNKLT-ELPRGIERLTHLTHLALDQ 144

Query: 363 NQLAGTIPLAIGELKSIQILFLNEN 387
           NQL      A   L S+   +L  N
Sbjct: 145 NQLKSIPHGAFDRLSSLTHAYLFGN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 45.8 bits (109), Expect = 1e-05
 Identities = 39/139 (28%), Positives = 60/139 (43%), Gaps = 8/139 (5%)

Query: 303 CTKLEVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQISDTIPDVIANLVNLNALGVES 362
           C+   V D  S R   V P   A + T    + +  NQI+   P V  +L+NL  L + S
Sbjct: 19  CSGTTV-DCRSKRHASV-P---AGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGS 73

Query: 363 NQLAGTIPLAI-GELKSIQILFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSN 421
           NQL   +P+ +   L  + +L L  N L     +    L  L +L +  N L  ++P   
Sbjct: 74  NQLG-ALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGI 131

Query: 422 GNCQNLILLTTRKNKLSGI 440
               +L  L   +N+L  I
Sbjct: 132 ERLTHLTHLALDQNQLKSI 150

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 51.1 bits (122), Expect = 7e-07
 Identities = 58/346 (16%), Positives = 118/346 (34%), Gaps = 26/346 (7%)

Query: 224 NLPNLRYFSISG--NNLT-GSLQDSLSNATNLQGLEINRNLFSGKVSINFSRLQNLSRLN 280
              +L   +IS   + ++  +L+  ++   NL+ L++NR +   K++    R   L  L 
Sbjct: 182 TYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELG 241

Query: 281 LGENNLGTGTTNDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQ 340
            G                 L+ C +L  L    +     LP ++ ++ + +T + +    
Sbjct: 242 TGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLP-AVYSVCSRLTTLNLSYAT 300

Query: 341 ISDT-IPDVIANLVNLNALGVESN-QLAGTIPLAIGELKSIQILFLNENFLRGTIPSSLG 398
           +    +  ++     L  L V    + AG   LA    K ++ L +        +     
Sbjct: 301 VQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLAST-CKDLRELRV--FPSEPFVMEPNV 357

Query: 399 NLTL--LTQLILEVNNLQGKIPPSNGNCQN-----LILLTTRKNKLSGIVPRQLLRIITL 451
            LT   L  + +    L+  +      C+      LI +   +  ++       L II  
Sbjct: 358 ALTEQGLVSVSMGCPKLE-SV---LYFCRQMTNAALITIARNRPNMTRFR----LCIIEP 409

Query: 452 SVLLDLSDNLLSGHFPTKVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFT 511
                L+   L   F   V + K+L  L +S  +              +E L +     +
Sbjct: 410 KAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAFAGDS 469

Query: 512 -ISIPSTLSSLKSITELDLSRNNLSG-HIPQYLENLSFLLFLNMSY 555
            + +   LS   S+ +L++         +      L  +  L MS 
Sbjct: 470 DLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSS 515

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 42.2 bits (99), Expect = 4e-04
 Identities = 50/356 (14%), Positives = 106/356 (29%), Gaps = 45/356 (12%)

Query: 50  LSPFVGNLNFLRSINLPNNSFRGKIPHEVGNLFRLQNLTL------TNNYFLGKILTDLS 103
           L   V     L+S+ L       K+   +    +L+ L                +   LS
Sbjct: 203 LERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALS 262

Query: 104 HCSNLMKFEASNNKLEGEIPVKISNLLMLQILNIAENHLKGQ-LPASIGNLSALQEIDVR 162
            C  L       + +   +P   S    L  LN++   ++   L   +     LQ + V 
Sbjct: 263 GCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVL 322

Query: 163 GNRLGGRIPSTISHVRNLISFNVAYNQF-----------SGMIPPIYNISSLQYIFIHTN 211
                  +    S  ++L    V  ++             G++        L+ +     
Sbjct: 323 DYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCR 382

Query: 212 RFHGSVPLDNGV-----NLPNLRYFSISGNNLTGSLQDS-----------LSNATNLQGL 255
           +       +  +     N PN+  F +           +           + +  +L+ L
Sbjct: 383 QMT-----NAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRL 437

Query: 256 EINRNLFSGKVSINFSRLQNLSRLNLGENNLGTGTTNDLDFITLLTNCTKLEVLDLHSNR 315
            ++  L         +  + +  L++           DL    +L+ C  L  L++    
Sbjct: 438 SLSGLLTDKVFEYIGTYAKKMEMLSVAFAGDS-----DLGMHHVLSGCDSLRKLEIRDCP 492

Query: 316 FGGVLPFSLANLSTTMTEIAIGSNQISDT-IPDVIANLVNLNALGVESNQLAGTIP 370
           FG     + A+   TM  + + S  +S      +   +  LN   ++      + P
Sbjct: 493 FGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDERGAPDSRP 548

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 49.3 bits (118), Expect = 8e-07
 Identities = 23/114 (20%), Positives = 46/114 (40%), Gaps = 3/114 (2%)

Query: 307 EVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQISDTIPDVIANLVNLNALGVESNQLA 366
             L L++N F  +    +      + +I   +N+I+D           +N + + SN+L 
Sbjct: 35  AELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLE 94

Query: 367 GTIPLAI-GELKSIQILFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPP 419
             +   +   L+S++ L L  N +      S   L+ +  L L  N +   + P
Sbjct: 95  -NVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQIT-TVAP 146

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 46.2 bits (110), Expect = 9e-06
 Identities = 27/138 (19%), Positives = 56/138 (40%), Gaps = 6/138 (4%)

Query: 274 QNLSRLNLGENNLGTGTTNDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSTTMTE 333
           Q  + L L  N         L+   +     +L  ++  +N+   +   +     + + E
Sbjct: 32  QYTAELRLNNNEFTV-----LEATGIFKKLPQLRKINFSNNKITDIEEGAFEGA-SGVNE 85

Query: 334 IAIGSNQISDTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSIQILFLNENFLRGTI 393
           I + SN++ +    +   L +L  L + SN++      +   L S+++L L +N +    
Sbjct: 86  ILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVA 145

Query: 394 PSSLGNLTLLTQLILEVN 411
           P +   L  L+ L L  N
Sbjct: 146 PGAFDTLHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 43.1 bits (102), Expect = 8e-05
 Identities = 25/142 (17%), Positives = 52/142 (36%), Gaps = 13/142 (9%)

Query: 201 SSLQYIFIHTNRFHGSVPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINRN 260
                + ++ N F           LP LR  + S N +T   + +   A+ +  + +  N
Sbjct: 32  QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91

Query: 261 LFSGKVSINFSRLQNLSRLNLGENNLGT---GTTNDLDFITLLTNCTKLEVLDLHSNRFG 317
                    F  L++L  L L  N +      +   L         + + +L L+ N+  
Sbjct: 92  RLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGL---------SSVRLLSLYDNQIT 142

Query: 318 GVLPFSLANLSTTMTEIAIGSN 339
            V P +   L  +++ + + +N
Sbjct: 143 TVAPGAFDTL-HSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 40.8 bits (96), Expect = 5e-04
 Identities = 27/133 (20%), Positives = 53/133 (39%), Gaps = 8/133 (6%)

Query: 404 TQLILEVNNLQGKIPPSNG--NCQNLILLTTRKNKLSGIVPRQLLRIITLSVLLDLSDNL 461
            +L L  N     +  +        L  +    NK++ I          ++ +  L+ N 
Sbjct: 35  AELRLNNNEFT-VLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEI-LLTSNR 92

Query: 462 LSGHFPTKV-GNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTISIP-STLS 519
           L      K+   L++L +L + SN  +     +  G +S+  L + DN  T ++      
Sbjct: 93  LEN-VQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQIT-TVAPGAFD 150

Query: 520 SLKSITELDLSRN 532
           +L S++ L+L  N
Sbjct: 151 TLHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 40.4 bits (95), Expect = 8e-04
 Identities = 24/137 (17%), Positives = 50/137 (36%), Gaps = 13/137 (9%)

Query: 417 IPPSNGNCQNLILLTTRKNKLSGIVPRQLLRIITLSVLLDLSDNLLSGHFPTKVGNLKNL 476
           IP        L L     N+ + +    + + +     ++ S+N ++            +
Sbjct: 30  IPQ---YTAELRL---NNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGV 83

Query: 477 VSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTISIPS-TLSSLKSITELDLSRNNLS 535
             + ++SN           G  SL+ L ++ N  T  + + +   L S+  L L  N ++
Sbjct: 84  NEILLTSNRLENVQHKMFKGLESLKTLMLRSNRIT-CVGNDSFIGLSSVRLLSLYDNQIT 142

Query: 536 GHIP----QYLENLSFL 548
             +       L +LS L
Sbjct: 143 -TVAPGAFDTLHSLSTL 158

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 49.6 bits (119), Expect = 8e-07
 Identities = 40/147 (27%), Positives = 59/147 (40%), Gaps = 13/147 (8%)

Query: 270 FSRLQNLSRLNLGENNLGT-GTTNDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLS 328
              L N+  L LG N L       +L         T L  L L  N+    LP  + +  
Sbjct: 59  IQYLPNVRYLALGGNKLHDISALKEL---------TNLTYLILTGNQLQS-LPNGVFDKL 108

Query: 329 TTMTEIAIGSNQISDTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSIQILFLNENF 388
           T + E+ +  NQ+      V   L NL  L +  NQL         +L ++  L L+ N 
Sbjct: 109 TNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQ 168

Query: 389 LRGTIPSSL-GNLTLLTQLILEVNNLQ 414
           L+ ++P  +   LT L  L L  N L+
Sbjct: 169 LQ-SLPEGVFDKLTQLKDLRLYQNQLK 194

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 48.9 bits (117), Expect = 9e-07
 Identities = 35/137 (25%), Positives = 55/137 (40%), Gaps = 3/137 (2%)

Query: 325 ANLSTTMTEIAIGSNQISDTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSIQILFL 384
            NL  T+TEI +  N I    P   +    L  + + +NQ++   P A   L+S+  L L
Sbjct: 28  TNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVL 87

Query: 385 NENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSN-GNCQNLILLTTRKNKLSGIVPR 443
             N +     S    L  L  L+L  N +   +      +  NL LL+   NKL  I   
Sbjct: 88  YGNKITELPKSLFEGLFSLQLLLLNANKIN-CLRVDAFQDLHNLNLLSLYDNKLQTIAKG 146

Query: 444 QLLRIITLSVLLDLSDN 460
               +  +   + L+ N
Sbjct: 147 TFSPLRAIQT-MHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 48.5 bits (116), Expect = 1e-06
 Identities = 28/141 (19%), Positives = 53/141 (37%), Gaps = 13/141 (9%)

Query: 250 TNLQGLEINRNLFSGKVSINFSRLQNLSRLNLGENNLGT---GTTNDLDFITLLTNCTKL 306
             +  + + +N         FS  + L R++L  N +          L           L
Sbjct: 32  ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGL---------RSL 82

Query: 307 EVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQISDTIPDVIANLVNLNALGVESNQLA 366
             L L+ N+   +       L  ++  + + +N+I+    D   +L NLN L +  N+L 
Sbjct: 83  NSLVLYGNKITELPKSLFEGL-FSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQ 141

Query: 367 GTIPLAIGELKSIQILFLNEN 387
                    L++IQ + L +N
Sbjct: 142 TIAKGTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 43.5 bits (103), Expect = 7e-05
 Identities = 27/132 (20%), Positives = 53/132 (40%), Gaps = 8/132 (6%)

Query: 157 QEIDVRGNRLGGRIPSTISHVRNLISFNVAYNQFSGMIPP--IYNISSLQYIFIHTNRFH 214
            EI +  N +    P   S  + L   +++ NQ S  + P     + SL  + ++ N+  
Sbjct: 35  TEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISE-LAPDAFQGLRSLNSLVLYGNKIT 93

Query: 215 GSVPLDNGV--NLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINRNLFSGKVSINFSR 272
               L   +   L +L+   ++ N +     D+  +  NL  L +  N         FS 
Sbjct: 94  E---LPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSP 150

Query: 273 LQNLSRLNLGEN 284
           L+ +  ++L +N
Sbjct: 151 LRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 42.3 bits (100), Expect = 2e-04
 Identities = 28/132 (21%), Positives = 59/132 (44%), Gaps = 4/132 (3%)

Query: 133 QILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVAYNQFSG 192
             + + +N +K   P +      L+ ID+  N++    P     +R+L S  +  N+ + 
Sbjct: 35  TEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITE 94

Query: 193 MIPP--IYNISSLQYIFIHTNRFHGSVPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNAT 250
            +P      + SLQ + ++ N+ +  + +D   +L NL   S+  N L    + + S   
Sbjct: 95  -LPKSLFEGLFSLQLLLLNANKIN-CLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLR 152

Query: 251 NLQGLEINRNLF 262
            +Q + + +N F
Sbjct: 153 AIQTMHLAQNPF 164

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 41.6 bits (98), Expect = 3e-04
 Identities = 29/156 (18%), Positives = 56/156 (35%), Gaps = 27/156 (17%)

Query: 378 SIQILFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSNGNCQNLILLTTRKNKL 437
           +I  + L +N ++   P +      L ++ L  N +  ++ P     Q L  L +     
Sbjct: 33  TITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS-ELAP--DAFQGLRSLNS----- 84

Query: 438 SGIVPRQLLRIITLSVLLDLSDNLLSGHFPTKV-GNLKNLVSLDISSNMFSGEIPTTLGG 496
                            L L  N ++   P  +   L +L  L +++N  +         
Sbjct: 85  -----------------LVLYGNKIT-ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQD 126

Query: 497 CTSLEYLGMQDNSFTISIPSTLSSLKSITELDLSRN 532
             +L  L + DN        T S L++I  + L++N
Sbjct: 127 LHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 49.3 bits (118), Expect = 1e-06
 Identities = 56/357 (15%), Positives = 112/357 (31%), Gaps = 62/357 (17%)

Query: 224 NLPNLRYFSISGNNLTGS----LQDSL-SNATNLQGLEINRNLFSGKVSINFSRL----- 273
               +    +S NNL       L  +  +   ++  L ++ N    K S    ++     
Sbjct: 20  IPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIP 79

Query: 274 QNLSRLNLGENNLGTGTTNDLDFITLLTNCTKLEVLDLHSNRFG--GVLPFS--LANLST 329
            N++ LNL  N L   ++++L   TL      + VLDL  N F       F    +NL  
Sbjct: 80  ANVTSLNLSGNFLSYKSSDEL-VKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPA 138

Query: 330 TMTEIAIGSNQISDTIPDVIANL-----VNLNALGVESNQL--AGTIPLA---IGELKSI 379
           ++T + +  N +     D +  +      N+N+L +  N L       LA        S+
Sbjct: 139 SITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASV 198

Query: 380 QILFLNENFLRGTIPSSLG-----NLTLLTQLILEVNNLQGK----IPPSNGNCQNLILL 430
             L L+ N L     + L          +  L L +N L G     +     + ++L  +
Sbjct: 199 TSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTV 258

Query: 431 TTRKNKLSGIVPRQLLRIITLSVLLDLSDNLLSGHFPTKVGNLKNLVSLDISSNMFSGEI 490
               + +  +   Q   +                       N++ ++ +D +        
Sbjct: 259 YLDYDIVKNMSKEQCKALGAA------------------FPNIQKIILVDKNGKEIHPSH 300

Query: 491 PTTLGG-----CTSLEYLGMQDNSFT-----ISIPSTLSSLKSITELDLSRNNLSGH 537
              +           +   + +          +    L+    + E   +   L  H
Sbjct: 301 SIPISNLIRELSGKADVPSLLNQCLIFAQKHQTNIEDLNIPDELRESIQTCKPLLEH 357

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 47.3 bits (113), Expect = 2e-06
 Identities = 29/106 (27%), Positives = 52/106 (49%), Gaps = 4/106 (3%)

Query: 307 EVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQISDTIPDVIANLVNLNALGVESNQLA 366
             L L  N+F  ++P  L+N    +T I + +N+IS       +N+  L  L +  N+L 
Sbjct: 34  TELYLDGNQFT-LVPKELSNY-KHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLR 91

Query: 367 GTIPLAIGELKSIQILFLNENFLRGTIP-SSLGNLTLLTQLILEVN 411
              P     LKS+++L L+ N +   +P  +  +L+ L+ L +  N
Sbjct: 92  CIPPRTFDGLKSLRLLSLHGNDIS-VVPEGAFNDLSALSHLAIGAN 136

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 46.2 bits (110), Expect = 4e-06
 Identities = 22/121 (18%), Positives = 36/121 (29%), Gaps = 9/121 (7%)

Query: 194 IPPIYNISSLQYIFIHTNRFHGSVPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQ 253
                N    + + +   +      L  G  L        S N +   L         L+
Sbjct: 12  AAQYTNAVRDRELDLRGYKIPVIENL--GATLDQFDAIDFSDNEIR-KLDG-FPLLRRLK 67

Query: 254 GLEINRNLFSGKVSINFSRLQNLSRLNLGENNLGTGTTNDLDFITLLTNCTKLEVLDLHS 313
            L +N N            L +L+ L L  N+L      +L  +  L +   L  L +  
Sbjct: 68  TLLVNNNRICRIGEGLDQALPDLTELILTNNSL-----VELGDLDPLASLKSLTYLCILR 122

Query: 314 N 314
           N
Sbjct: 123 N 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 41.2 bits (97), Expect = 3e-04
 Identities = 16/105 (15%), Positives = 31/105 (29%), Gaps = 5/105 (4%)

Query: 455 LDLSDNLLSGHFPTKVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTISI 514
           + L+  L+      +  N      LD+        I          + +   DN   I  
Sbjct: 2   VKLTAELIEQ--AAQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNE--IRK 56

Query: 515 PSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLLFLNMSYNHFE 559
                 L+ +  L ++ N +        + L  L  L ++ N   
Sbjct: 57  LDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV 101

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 45.9 bits (108), Expect = 2e-05
 Identities = 20/93 (21%), Positives = 33/93 (35%), Gaps = 2/93 (2%)

Query: 467 PTKVGNLKNLVSLDISSNMFSGEIPT-TLGGCTSLEYLGMQDNSFTISIPSTLSSLKSIT 525
              +   +NL  L I +      +    L G   L  L +  +      P        ++
Sbjct: 24  LHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLS 83

Query: 526 ELDLSRNNLSGHIPQYLENLSFLLFLNMSYNHF 558
            L+LS N L     + ++ LS L  L +S N  
Sbjct: 84  RLNLSFNALESLSWKTVQGLS-LQELVLSGNPL 115

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 44.2 bits (105), Expect = 3e-05
 Identities = 23/106 (21%), Positives = 44/106 (41%), Gaps = 2/106 (1%)

Query: 307 EVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQISDTIPDVIANLVNLNALGVESNQLA 366
             L L+ N  G +    L      + ++ +  NQ++   P+      ++  L +  N++ 
Sbjct: 32  TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIK 91

Query: 367 GTIPLAI-GELKSIQILFLNENFLRGTIPSSLGNLTLLTQLILEVN 411
             I   +   L  ++ L L +N +   +P S  +L  LT L L  N
Sbjct: 92  -EISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 44.3 bits (105), Expect = 3e-05
 Identities = 41/146 (28%), Positives = 63/146 (43%), Gaps = 23/146 (15%)

Query: 250 TNLQGLEINRNLFSGKVSINFSRLQNLSRLNLGENNLGT---GTTNDLDFITLLTNCTKL 306
                L++  N      +  F  L +L++L LG N L +   G  N L         T L
Sbjct: 28  AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKL---------TSL 78

Query: 307 EVLDLHSNRFGGVLP---F-SLANLSTTMTEIAIGSNQISDTIPD-VIANLVNLNALGVE 361
             L+L +N+    LP   F  L  L     E+A+ +NQ+  ++PD V   L  L  L + 
Sbjct: 79  TYLNLSTNQL-QSLPNGVFDKLTQL----KELALNTNQLQ-SLPDGVFDKLTQLKDLRLY 132

Query: 362 SNQLAGTIPLAIGELKSIQILFLNEN 387
            NQL          L S+Q ++L++N
Sbjct: 133 QNQLKSVPDGVFDRLTSLQYIWLHDN 158

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 43.9 bits (104), Expect = 4e-05
 Identities = 32/113 (28%), Positives = 57/113 (50%), Gaps = 5/113 (4%)

Query: 304 TKLEVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQISDTIPDVIANLVNLNALGVESN 363
            +   LDL +N     LP  + +  T++T++ +G N++      V   L +L  L + +N
Sbjct: 28  AQTTYLDLETNSLKS-LPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN 86

Query: 364 QLAGTIPLAI-GELKSIQILFLNENFLRGTIPSSL-GNLTLLTQLILEVNNLQ 414
           QL  ++P  +  +L  ++ L LN N L+ ++P  +   LT L  L L  N L+
Sbjct: 87  QLQ-SLPNGVFDKLTQLKELALNTNQLQ-SLPDGVFDKLTQLKDLRLYQNQLK 137

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 40.0 bits (94), Expect = 7e-04
 Identities = 23/91 (25%), Positives = 39/91 (42%), Gaps = 2/91 (2%)

Query: 325 ANLSTTMTEIAIGSNQISDTIPDVIANLVNLNALGVESNQLAGTIPLAI-GELKSIQILF 383
             +    T + + +N +      V   L +L  L +  N+L  ++P  +  +L S+  L 
Sbjct: 24  TGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLN 82

Query: 384 LNENFLRGTIPSSLGNLTLLTQLILEVNNLQ 414
           L+ N L+         LT L +L L  N LQ
Sbjct: 83  LSTNQLQSLPNGVFDKLTQLKELALNTNQLQ 113

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 42.3 bits (100), Expect = 1e-04
 Identities = 30/114 (26%), Positives = 57/114 (50%), Gaps = 9/114 (7%)

Query: 303 CTKLEVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQISDTIPDVIANLVNLNALGVES 362
           C+  E+   +S     V P     + ++ T + + SN++      V   L  L  L +  
Sbjct: 7   CSGTEI-RCNSKGLTSV-P---TGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQ 61

Query: 363 NQLAGTIPLAI-GELKSIQILFLNENFLRGTIPSSL-GNLTLLTQLILEVNNLQ 414
           NQ+  ++P  +  +L  + IL+L+EN L+ ++P+ +   LT L +L L+ N L+
Sbjct: 62  NQIQ-SLPDGVFDKLTKLTILYLHENKLQ-SLPNGVFDKLTQLKELALDTNQLK 113

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 42.4 bits (100), Expect = 1e-04
 Identities = 31/124 (25%), Positives = 51/124 (41%), Gaps = 13/124 (10%)

Query: 265 KVSINFSRLQNLSRLNLGENNLGTGTTNDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSL 324
           K+    S L+    L L  NN+          I+ L+    L +L L  N    +    L
Sbjct: 39  KMDATLSTLKACKHLALSTNNIEK--------ISSLSGMENLRILSLGRNLIKKIEN--L 88

Query: 325 ANLSTTMTEIAIGSNQISDTIPDVIANLVNLNALGVESNQLAGTIPLA-IGELKSIQILF 383
             ++ T+ E+ I  NQI+      I  LVNL  L + +N++     +  +  L  ++ L 
Sbjct: 89  DAVADTLEELWISYNQIASL--SGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLL 146

Query: 384 LNEN 387
           L  N
Sbjct: 147 LAGN 150

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 40.8 bits (96), Expect = 4e-04
 Identities = 27/107 (25%), Positives = 45/107 (42%), Gaps = 14/107 (13%)

Query: 455 LDLSDNLLSGHFPTKV---GNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFT 511
           L LS N +      K+     ++NL  L +  N+   +I        +LE L +  N   
Sbjct: 53  LALSTNNI-----EKISSLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQ-- 104

Query: 512 ISIPSTLSSLKSITELDLSRNNLS--GHIPQYLENLSFLLFLNMSYN 556
           I+  S +  L ++  L +S N ++  G I   L  L  L  L ++ N
Sbjct: 105 IASLSGIEKLVNLRVLYMSNNKITNWGEI-DKLAALDKLEDLLLAGN 150

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 40.4 bits (95), Expect = 3e-04
 Identities = 19/89 (21%), Positives = 39/89 (43%), Gaps = 3/89 (3%)

Query: 472 NLKNLVSLDISSNMFS-GEIPTTLGGCTSLEYLGMQDNSFTISIPSTLSSLKSITELDLS 530
              ++  L + ++  + G++         LE+L   +    ++  + L  L  + +L+LS
Sbjct: 15  TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVG--LTSIANLPKLNKLKKLELS 72

Query: 531 RNNLSGHIPQYLENLSFLLFLNMSYNHFE 559
            N +SG +    E    L  LN+S N  +
Sbjct: 73  DNRVSGGLEVLAEKCPNLTHLNLSGNKIK 101

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 40.4 bits (95), Expect = 3e-04
 Identities = 23/111 (20%), Positives = 45/111 (40%), Gaps = 4/111 (3%)

Query: 56  NLNFLRSINLPNNSF-RGKIPHEVGNLFRLQNLTLTNNYFLGKILTDLSHCSNLMKFEAS 114
             + ++ + L N+    GK+         L+ L+  N       + +L   + L K E S
Sbjct: 15  TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGL--TSIANLPKLNKLKKLELS 72

Query: 115 NNKLEGEIPVKISNLLMLQILNIAENHLKG-QLPASIGNLSALQEIDVRGN 164
           +N++ G + V       L  LN++ N +K       +  L  L+ +D+   
Sbjct: 73  DNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 42.2 bits (99), Expect = 4e-04
 Identities = 41/338 (12%), Positives = 94/338 (27%), Gaps = 39/338 (11%)

Query: 224 NLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINRNLFSGKVSINFSRLQNLSRLNLGE 283
           N  +L    +    +   L      A NL+            +   +  L    +L    
Sbjct: 218 NCRSLVSVKVGDFEIL-ELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCR-- 274

Query: 284 NNLGTGTTNDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQISD 343
             LG       +   L     ++  LDL           +L      +  +    N I D
Sbjct: 275 --LGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLET-RNVIGD 331

Query: 344 T-IPDVIANLVNLNALGVESNQLAGTIPLAIGELKSIQILFLNENFLRGTIPSSLGNLTL 402
             +  +      L  L +E       +    G +    ++ L +                
Sbjct: 332 RGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQG------------CQE 379

Query: 403 LTQLILEVNNLQGKIPPSNGNCQNLILLTTRKNKLSGIVPRQLLRIITLSVLLDLSDNLL 462
           L  + + V+++  +         +L  + T    L         R++ L     ++D  L
Sbjct: 380 LEYMAVYVSDITNE---------SLESIGTYLKNLCD------FRLVLLDREERITDLPL 424

Query: 463 SGHFPTKVGNLKNLVSLDISSN--MFSGEIPTTLG-GCTSLEYLGMQDNSFT-ISIPSTL 518
                + +   K L            +    + +G    ++ ++ +     +   +    
Sbjct: 425 DNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFS 484

Query: 519 SSLKSITELDLSRNNLSGH-IPQYLENLSFLLFLNMSY 555
               ++ +L++     S   I   +  L  L +L +  
Sbjct: 485 RGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQG 522

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 41.9 bits (98), Expect = 5e-04
 Identities = 45/363 (12%), Positives = 95/363 (26%), Gaps = 46/363 (12%)

Query: 47  GGVLSPFVGNLNFLRSINLPNNSFRG----KIPHEVGNLFRLQNLTLTNNYF--LGKILT 100
           G  L     +   L  +N     F       +     N   L ++ + +     L     
Sbjct: 181 GKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFK 240

Query: 101 DLSHCSNLMKFEASNNKLEGEIPVKISNLLMLQILNIAENHLKGQLPASIGNLSALQEID 160
             ++         + +    E  + +     L  L ++       +P      + ++++D
Sbjct: 241 AAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNE-MPILFPFAAQIRKLD 299

Query: 161 VRGNRL-GGRIPSTISHVRNLISFNVAYNQ-FSGMIPPIYNISSLQYIFIHTNRFHGSVP 218
           +    L      + I    NL            G+         L+ + I        + 
Sbjct: 300 LLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGME 359

Query: 219 L------DNGV-----NLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINRNLFSGKVS 267
                    G+         L Y ++  +++T               LE         + 
Sbjct: 360 DEEGLVSQRGLIALAQGCQELEYMAVYVSDITNE------------SLE--------SIG 399

Query: 268 INFSRLQNLSRLNLGENNLGTGTTNDLDFITLLTNCTKLEVLDLHSN--RFGGVLPFSLA 325
                L +   + L      T    D    +LL  C KL     +        +    + 
Sbjct: 400 TYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIG 459

Query: 326 NLSTTMTEIAIGSNQISDT-IPDVIANLVNLNALGVESNQL--AGTIPLAIGELKSIQIL 382
             S  +  + +G    SD  + +      NL  L +                 L S++ L
Sbjct: 460 QYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTK-LPSLRYL 518

Query: 383 FLN 385
           ++ 
Sbjct: 519 WVQ 521

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 41.9 bits (98), Expect = 6e-04
 Identities = 49/326 (15%), Positives = 100/326 (30%), Gaps = 34/326 (10%)

Query: 18  SINLCQW-TGVTCGHRRQRVTGLDLRHQSVGGVLSPFVGNLNFLRSINLPNNSFRGK--I 74
            +   +    V        +        +    +     NL F R +     S+ G   +
Sbjct: 226 KVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEM 285

Query: 75  PHEVGNLFRLQNLTLTNNYFLG-KILTDLSHCSNLMKFEASNNKLEGEIPVKISNLLMLQ 133
           P       +++ L L           T +  C NL   E  N   +  + V       L+
Sbjct: 286 PILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLK 345

Query: 134 ILNIAENHLKGQLPASIGNLS------------ALQEIDVRGNRLGGRIPSTISHV-RNL 180
            L I     +  +    G +S             L+ + V  + +      +I    +NL
Sbjct: 346 RLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNL 405

Query: 181 ISFNVAYNQFSGMIPPIYNISSLQYIFI------HTNRFHGSVPL-DNGV-----NLPNL 228
             F +        I  +   + ++ + I          +     L D G+       PN+
Sbjct: 406 CDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNV 465

Query: 229 RYFSISGNNLT-GSLQDSLSNATNLQGLEINRNLFSGK-VSINFSRLQNLSRLNLGENNL 286
           R+  +     +   L +      NLQ LE+    FS + ++   ++L +L  L +     
Sbjct: 466 RWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRA 525

Query: 287 GTGTTNDLDFITLLTNCTKLEVLDLH 312
              +    D + +      +E++   
Sbjct: 526 ---SMTGQDLMQMARPYWNIELIPSR 548

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 41.5 bits (97), Expect = 6e-04
 Identities = 41/315 (13%), Positives = 89/315 (28%), Gaps = 29/315 (9%)

Query: 50  LSPFVGNLNFLRSINLPNNSFRGKIPHEVGNLFRLQNLTLTNNYFLGK--ILTDLSHCSN 107
           L  F      L      + +    +P +  NL   + L      ++G   +       + 
Sbjct: 235 LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQ 294

Query: 108 LMKFEASNNKLEGEIPVK-ISNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRL 166
           + K +     LE E     I     L++L          L         L+ + +     
Sbjct: 295 IRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGAD 354

Query: 167 GGRIPSTISHVRNLISFNVAYNQFSGMIPPIYNISSLQYIFIHTNRF--HGSVPL-DNGV 223
              +      V              G+I        L+Y+ ++ +         +     
Sbjct: 355 EQGMEDEEGLVSQ-----------RGLIALAQGCQELEYMAVYVSDITNESLESIGTYLK 403

Query: 224 NLPNLRYFSISG-NNLTGSLQDS-----LSNATNLQGLEINRNLFSGKVSINFSRLQNLS 277
           NL + R   +     +T    D+     L     L+        +  +  +    L  + 
Sbjct: 404 NLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRF----AFYLRQGGLTDLGLSYIG 459

Query: 278 RL--NLGENNLGTGTTNDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSTTMTEIA 335
           +   N+    LG    +D   +     C  L+ L++    F      +      ++  + 
Sbjct: 460 QYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLW 519

Query: 336 IGSNQISDTIPDVIA 350
           +   + S T  D++ 
Sbjct: 520 VQGYRASMTGQDLMQ 534

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 40.9 bits (96), Expect = 7e-04
 Identities = 42/291 (14%), Positives = 86/291 (29%), Gaps = 39/291 (13%)

Query: 273 LQNLSRLNLGENNLGTGTTNDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSTTMT 332
           L +L +LNL    +       +  + L +    L+ ++L S +       +L  +     
Sbjct: 71  LSSLRQLNLAGVRMTPVKCTVVAAV-LGSGRHALDEVNLASCQLDPAGLRTLLPVFLRAR 129

Query: 333 EIAIGSNQISDTIPDVIA-----NLVNLNALGVESNQL--AGTIPLA--IGELKSIQILF 383
           ++ +  N +       +      +   +  L + +N L  AG   L   +    S+  L 
Sbjct: 130 KLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLS 189

Query: 384 LNENFLRGT----IPSSLGNLTLLTQLILEVNNLQGK----IPPSNGNCQNLILLTTRKN 435
           L    L       + + L     L +L +  N         +  +     +L LL    N
Sbjct: 190 LLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFN 249

Query: 436 KLSGIVPRQLLRII-TLSVLLDLSDNLLSGHFPTKVG------NLKNLVSLDISSNMFSG 488
           +LS    + L  +         +  +L  G   ++          +NL S D +      
Sbjct: 250 ELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVSEYWSVILSEVQRNLNSWDRARVQ--- 306

Query: 489 EIPTTLGGCTSLEYLGMQDNSFT----ISIPSTLSSLKSITELDLSRNNLS 535
                      L    ++D+             L     +  L     +  
Sbjct: 307 -------RHLELLLRDLEDSRGATLNPWRKAQLLRVEGEVRALLEQLGSSG 350

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	566
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	100.0
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	100.0
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.97
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.97
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.97
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.97
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.97
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.97
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.96
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.96
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.96
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.96
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.95
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.95
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.95
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.94
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.94
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.94
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.94
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.94
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.94
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.94
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.94
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.93
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.93
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.93
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.93
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.93
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.92
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.92
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.92
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.92
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.92
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.91
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.91
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.91
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.9
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.9
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.89
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.88
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.88
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.87
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.87
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.87
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.87
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.87
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.86
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.86
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.86
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.86
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.85
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.85
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.85
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.84
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.83
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.82
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.82
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.81
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.8
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.79
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.79
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.78
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.78
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.77
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.76
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.76
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.75
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.75
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.75
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.74
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.74
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.73
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.72
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.72
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.71
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.7
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.69
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.68
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.68
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.66
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.65
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.65
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.64
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.63
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.62
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.62
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.62
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.62
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.61
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.6
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.6
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.6
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.59
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.56
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.55
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.54
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.54
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.53
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.52
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.5
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.49
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.46
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.41
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.4
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.38
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.35
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.35
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.34
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.33
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.29
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	99.27
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	99.21
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.13
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.09
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.9
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.8
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.62
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.59
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.53
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.33
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.28
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.16
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.48
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.19
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.0
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.5
2lz0_A	100	Uncharacterized protein; hypothetical leucine rich	80.38

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=1.3e-68  Score=576.14  Aligned_cols=558  Identities=31%  Similarity=0.483  Sum_probs=457.7

Q ss_pred             CcccCCCCCCCCCCCcCCCCCCcccccccCCCCCcEEEEEcCCCccccc---cC-----------------------ccC
Q 046712            1 MKSQLQDPLGVTSSWNNSINLCQWTGVTCGHRRQRVTGLDLRHQSVGGV---LS-----------------------PFV   54 (566)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~i~~~---~~-----------------------~~~   54 (566)
                      ||+++.||. ++++|..+++||.|.||.|.  ..+|++|+|+++.+.+.   ++                       ..|
T Consensus        20 ~k~~~~~~~-~l~~W~~~~~~C~w~gv~C~--~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l~~~~~~~~~l~~~~   96 (768)
T 3rgz_A           20 FKDVLPDKN-LLPDWSSNKNPCTFDGVTCR--DDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGF   96 (768)
T ss_dssp             HHTTCSCTT-SSTTCCTTSCGGGSTTEEEE--TTEEEEEECTTSCCCEEHHHHHHHTTTCTTCCEEECTTSCEEECCCCC
T ss_pred             HHhhCCCcc-cccCCCCCCCCcCCcceEEC--CCcEEEEECCCCCcCCccCccChhHhccCcccccCCcCCCcCCCchhh
Confidence            788999999 99999999999999999998  48999999999988765   32                       578


Q ss_pred             cCCCCCCEEecCCCcccccCCc--ccCCCCCCCEEeCCCCcCCCcCcccc-ccCCCCcEEEcCCCcCCCCcchh---c--
Q 046712           55 GNLNFLRSINLPNNSFRGKIPH--EVGNLFRLQNLTLTNNYFLGKILTDL-SHCSNLMKFEASNNKLEGEIPVK---I--  126 (566)
Q Consensus        55 ~~l~~L~~L~ls~~~l~~~~~~--~~~~l~~L~~L~l~~~~l~~~~~~~~-~~l~~L~~L~l~~~~~~~~~~~~---l--  126 (566)
                      +++++|++|++++|.+.+.+|.  .+.++++|++|++++|.+.+..+..+ .++++|++|++++|.+++..+..   +  
T Consensus        97 ~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~  176 (768)
T 3rgz_A           97 KCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDG  176 (768)
T ss_dssp             CCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTC
T ss_pred             ccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhcc
Confidence            8889999999999988877777  78888889999998888776655554 56777777777777766444433   3  


Q ss_pred             --------------------cCCCCCCEEecccccCCCCCCccccCCCCCCEEEccCCcCcccCCcccccCCcccEeecc
Q 046712          127 --------------------SNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVA  186 (566)
Q Consensus       127 --------------------~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~  186 (566)
                                          ..+++|++|++++|.+.+..|. ++.+++|++|++++|.+++..|.++..+++|++|+++
T Consensus       177 l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls  255 (768)
T 3rgz_A          177 CGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNIS  255 (768)
T ss_dssp             CTTCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECC
T ss_pred             CCCCCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECC
Confidence                                4556666666777776655555 7788888888888888877777888888888888888


Q ss_pred             cccceecCCcccCcccCceEecccccccccCCCCCCCCCCCCcEEEcccccccccCcccccccCCCCeeecccccccccc
Q 046712          187 YNQFSGMIPPIYNISSLQYIFIHTNRFHGSVPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINRNLFSGKV  266 (566)
Q Consensus       187 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~  266 (566)
                      +|.+.+..+.. .+++|++|++++|.+.+.+|......+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..
T Consensus       256 ~n~l~~~~~~~-~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~i  334 (768)
T 3rgz_A          256 SNQFVGPIPPL-PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGEL  334 (768)
T ss_dssp             SSCCEESCCCC-CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEEC
T ss_pred             CCcccCccCcc-ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcC
Confidence            88887666644 77888888888888888888877755689999999999988888888899999999999999887555


Q ss_pred             ccc-ccCCCCCcEEECCCCccCCcCCCChhhhh-------------------hccC--CCCCCEEEccCCeeeeecchhH
Q 046712          267 SIN-FSRLQNLSRLNLGENNLGTGTTNDLDFIT-------------------LLTN--CTKLEVLDLHSNRFGGVLPFSL  324 (566)
Q Consensus       267 ~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-------------------~l~~--~~~L~~L~l~~~~~~~~~~~~~  324 (566)
                      +.. +..+++|++|++++|.+....+..+....                   .+..  +++|+.|++++|.+.+..|..+
T Consensus       335 p~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l  414 (768)
T 3rgz_A          335 PMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTL  414 (768)
T ss_dssp             CHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGG
T ss_pred             CHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHH
Confidence            544 78888899999888887643333221110                   1111  5678888888888877777776


Q ss_pred             hhhccCCcEEEccCCCCCCCcchhhhccCCCCeecccCCcccccccccccCCCCCCEEEccCCcccccCCccccCCCCCC
Q 046712          325 ANLSTTMTEIAIGSNQISDTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSIQILFLNENFLRGTIPSSLGNLTLLT  404 (566)
Q Consensus       325 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~  404 (566)
                      ... +.|++|++++|.+++..|..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+++.+|..+..+++|+
T Consensus       415 ~~l-~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~  493 (768)
T 3rgz_A          415 SNC-SELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLN  493 (768)
T ss_dssp             GGC-TTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCC
T ss_pred             hcC-CCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCC
Confidence            654 7888888888888878888888888888888888888888888888888888888888888888888888888899


Q ss_pred             eEeccCccccccCCCCCcCCCCCcEEEccCCcceeccchhhhhhcccceEEEccCCcccccCCc----------------
Q 046712          405 QLILEVNNLQGKIPPSNGNCQNLILLTTRKNKLSGIVPRQLLRIITLSVLLDLSDNLLSGHFPT----------------  468 (566)
Q Consensus       405 ~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~----------------  468 (566)
                      +|++++|++.+.+|..+..+++|++|++++|++.+..|..+..+..+ +.|++++|++.+..|.                
T Consensus       494 ~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L-~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~  572 (768)
T 3rgz_A          494 WISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSL-IWLDLNTNLFNGTIPAAMFKQSGKIAANFIAG  572 (768)
T ss_dssp             EEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTC-CEEECCSSEEESBCCGGGGTTTTCBCCSTTCS
T ss_pred             EEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCC-CEEECCCCccCCcCChHHhcccchhhhhcccc
Confidence            99999988888888888888899999999998888888888777666 8888888887755443                


Q ss_pred             ------------------------------------------------------CccCCCCCCEEeCccccccccCCccc
Q 046712          469 ------------------------------------------------------KVGNLKNLVSLDISSNMFSGEIPTTL  494 (566)
Q Consensus       469 ------------------------------------------------------~~~~~~~L~~L~ls~~~l~~~~~~~~  494 (566)
                                                                            .+..+++|+.||+++|++++.+|..|
T Consensus       573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l  652 (768)
T 3rgz_A          573 KRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEI  652 (768)
T ss_dssp             CEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGG
T ss_pred             ccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHH
Confidence                                                                  23446789999999999999999999


Q ss_pred             cCCCCCcEEeCCCCcccccCCcCCcCCCCCCEEeCCCCccccccCccccccccCceeecccCcCcccCCCC
Q 046712          495 GGCTSLEYLGMQDNSFTISIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLLFLNMSYNHFEGKVPIE  565 (566)
Q Consensus       495 ~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~  565 (566)
                      +.+++|++|+|++|.+++.+|+.++.+++|+.|||++|++++.+|+.+..+++|++|++++|+++|.||.+
T Consensus       653 ~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~  723 (768)
T 3rgz_A          653 GSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM  723 (768)
T ss_dssp             GGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSS
T ss_pred             hccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999974

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=2.2e-58  Score=496.59  Aligned_cols=513  Identities=30%  Similarity=0.475  Sum_probs=396.1

Q ss_pred             CcEEEEEcCCCccccccCccC-cCCCCCCEEecCCCcccccCCcc---cC----------------------CCCCCCEE
Q 046712           34 QRVTGLDLRHQSVGGVLSPFV-GNLNFLRSINLPNNSFRGKIPHE---VG----------------------NLFRLQNL   87 (566)
Q Consensus        34 ~~~~~l~l~~~~i~~~~~~~~-~~l~~L~~L~ls~~~l~~~~~~~---~~----------------------~l~~L~~L   87 (566)
                      +++++|++++|.+.+..+..+ .++++|++|++++|.+++..|..   +.                      ++++|++|
T Consensus       126 ~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L  205 (768)
T 3rgz_A          126 SGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFL  205 (768)
T ss_dssp             TTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBCTTCTTCCEE
T ss_pred             CCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCCcccCCcCCEE
Confidence            566777777776665555544 56666666666666665444433   44                      44555555


Q ss_pred             eCCCCcCCCcCccccccCCCCcEEEcCCCcCCCCcchhccCCCCCCEEecccccCCCCCCccccCCCCCCEEEccCCcCc
Q 046712           88 TLTNNYFLGKILTDLSHCSNLMKFEASNNKLEGEIPVKISNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLG  167 (566)
Q Consensus        88 ~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~  167 (566)
                      ++++|.+.+..+. +.++++|++|++++|.+++..|..+..+++|++|++++|.+.+..|..  .+++|++|++++|.++
T Consensus       206 ~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~  282 (768)
T 3rgz_A          206 DVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFT  282 (768)
T ss_dssp             ECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEE
T ss_pred             ECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc--ccCCCCEEECcCCccC
Confidence            5555555444443 555555556666555555555555555666666666665555444433  5556666666666665


Q ss_pred             ccCCcccccC-CcccEeecccccceecCC-cccCcccCceEecccccccccCCCCCCCCCCCCcEEEcccccccccCccc
Q 046712          168 GRIPSTISHV-RNLISFNVAYNQFSGMIP-PIYNISSLQYIFIHTNRFHGSVPLDNGVNLPNLRYFSISGNNLTGSLQDS  245 (566)
Q Consensus       168 ~~~~~~l~~l-~~L~~L~l~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~  245 (566)
                      +.+|..+... ++|++|++++|.+.+..+ .+..+++|++|++++|.+.+.+|......+++|++|++++|.+.+..+..
T Consensus       283 ~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~  362 (768)
T 3rgz_A          283 GEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPES  362 (768)
T ss_dssp             ESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTT
T ss_pred             CccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHH
Confidence            5566665553 677777777777665554 56667777777777777766666553446777777777777776666666


Q ss_pred             ccccC-CCCeeecccccccccccccccC--CCCCcEEECCCCccCCcCCCChhhhhhccCCCCCCEEEccCCeeeeecch
Q 046712          246 LSNAT-NLQGLEINRNLFSGKVSINFSR--LQNLSRLNLGENNLGTGTTNDLDFITLLTNCTKLEVLDLHSNRFGGVLPF  322 (566)
Q Consensus       246 l~~~~-~L~~L~l~~~~~~~~~~~~~~~--~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~  322 (566)
                      +..++ +|+.|++++|.+.+..+..+..  +++|++|++++|.+....+      ..+..+++|+.|++++|.+.+..|.
T Consensus       363 l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p------~~l~~l~~L~~L~Ls~N~l~~~~p~  436 (768)
T 3rgz_A          363 LTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIP------PTLSNCSELVSLHLSFNYLSGTIPS  436 (768)
T ss_dssp             HHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECC------GGGGGCTTCCEEECCSSEEESCCCG
T ss_pred             HHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccC------HHHhcCCCCCEEECcCCcccCcccH
Confidence            66665 7777777777776655555544  6778888888887765544      5577899999999999999988888


Q ss_pred             hHhhhccCCcEEEccCCCCCCCcchhhhccCCCCeecccCCcccccccccccCCCCCCEEEccCCcccccCCccccCCCC
Q 046712          323 SLANLSTTMTEIAIGSNQISDTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSIQILFLNENFLRGTIPSSLGNLTL  402 (566)
Q Consensus       323 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~  402 (566)
                      .+... ++|+.|++++|.+.+.+|..+..+++|++|++++|.+++..|..+..+++|++|++++|.+++.+|..+..+++
T Consensus       437 ~l~~l-~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~  515 (768)
T 3rgz_A          437 SLGSL-SKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLEN  515 (768)
T ss_dssp             GGGGC-TTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTT
T ss_pred             HHhcC-CCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCC
Confidence            87765 89999999999999999999999999999999999999889999999999999999999999999999999999


Q ss_pred             CCeEeccCccccccCCCCCcCCCCCcEEEccCCcceeccchhhhhh----------------------------------
Q 046712          403 LTQLILEVNNLQGKIPPSNGNCQNLILLTTRKNKLSGIVPRQLLRI----------------------------------  448 (566)
Q Consensus       403 L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~----------------------------------  448 (566)
                      |++|++++|++.+.+|..+..+++|+.|++++|++.+.+|..++..                                  
T Consensus       516 L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  595 (768)
T 3rgz_A          516 LAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLE  595 (768)
T ss_dssp             CCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEE
T ss_pred             CCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccc
Confidence            9999999999999999999999999999999999998877766442                                  


Q ss_pred             -----------------------------------cccceEEEccCCcccccCCcCccCCCCCCEEeCccccccccCCcc
Q 046712          449 -----------------------------------ITLSVLLDLSDNLLSGHFPTKVGNLKNLVSLDISSNMFSGEIPTT  493 (566)
Q Consensus       449 -----------------------------------~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~l~~~~~~~  493 (566)
                                                         ...++.|++++|.+.+..|..+..+++|+.|++++|.+++.+|..
T Consensus       596 ~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~  675 (768)
T 3rgz_A          596 FQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDE  675 (768)
T ss_dssp             CTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGG
T ss_pred             cccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChH
Confidence                                               123578999999999999999999999999999999999999999


Q ss_pred             ccCCCCCcEEeCCCCcccccCCcCCcCCCCCCEEeCCCCccccccCccccccccCceeecccCc
Q 046712          494 LGGCTSLEYLGMQDNSFTISIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLLFLNMSYNH  557 (566)
Q Consensus       494 ~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~  557 (566)
                      |..+++|++|+|++|.+++.+|+.+..++.|++|++++|++++.+|+. ..+..+....+.||+
T Consensus       676 l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~-~~~~~~~~~~~~gN~  738 (768)
T 3rgz_A          676 VGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM-GQFETFPPAKFLNNP  738 (768)
T ss_dssp             GGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSS-SSGGGSCGGGGCSCT
T ss_pred             HhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCc-hhhccCCHHHhcCCc
Confidence            999999999999999999999999999999999999999999999975 445566677777885

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=5.5e-55  Score=466.58  Aligned_cols=520  Identities=20%  Similarity=0.226  Sum_probs=368.7

Q ss_pred             CcEEEEEcCCCccccccCccCcCCCCCCEEecCCCcccccCCcccCCCCCCCEEeCCCCcCCCcCccccccCCCCcEEEc
Q 046712           34 QRVTGLDLRHQSVGGVLSPFVGNLNFLRSINLPNNSFRGKIPHEVGNLFRLQNLTLTNNYFLGKILTDLSHCSNLMKFEA  113 (566)
Q Consensus        34 ~~~~~l~l~~~~i~~~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l  113 (566)
                      +++++|++++|.+++..+..|+++++|++|++++|.+++..|.+|.++++|++|++++|.++...+..|+++++|++|++
T Consensus        25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L  104 (680)
T 1ziw_A           25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHL  104 (680)
T ss_dssp             TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred             CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEEC
Confidence            68999999999999888888999999999999999999888889999999999999999998777778999999999999


Q ss_pred             CCCcCCCCcchhccCCCCCCEEecccccCCCCCCccccCCCCCCEEEccCCcCcccCCcccc--cCCcccEeecccccce
Q 046712          114 SNNKLEGEIPVKISNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTIS--HVRNLISFNVAYNQFS  191 (566)
Q Consensus       114 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~--~l~~L~~L~l~~~~~~  191 (566)
                      ++|.+.+..+..+.++++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+.  .+++|+.|++++|.+.
T Consensus       105 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~  184 (680)
T 1ziw_A          105 MSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIK  184 (680)
T ss_dssp             CSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCC
T ss_pred             CCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCccc
Confidence            99999877778899999999999999999887888889999999999999998866555554  4578888888888776


Q ss_pred             ecCC-cccCc---------------------------ccCceEecccccccccCCCCCCCCC--CCCcEEEccccccccc
Q 046712          192 GMIP-PIYNI---------------------------SSLQYIFIHTNRFHGSVPLDNGVNL--PNLRYFSISGNNLTGS  241 (566)
Q Consensus       192 ~~~~-~l~~~---------------------------~~L~~L~l~~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~~  241 (566)
                      +..+ .+..+                           ++|++|+++++.+.+..+.... .+  ++|++|++++|.+...
T Consensus       185 ~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~-~l~~~~L~~L~Ls~n~l~~~  263 (680)
T 1ziw_A          185 EFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFL-GLKWTNLTMLDLSYNNLNVV  263 (680)
T ss_dssp             CBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTG-GGGGSCCCEEECTTSCCCEE
T ss_pred             ccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhh-ccCcCCCCEEECCCCCcCcc
Confidence            5544 22222                           3455555555555443333222 23  2366666666666655


Q ss_pred             CcccccccCCCCeeecccccccccccccccCCCCCcEEECC---------------------------------CCccCC
Q 046712          242 LQDSLSNATNLQGLEINRNLFSGKVSINFSRLQNLSRLNLG---------------------------------ENNLGT  288 (566)
Q Consensus       242 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~---------------------------------~~~~~~  288 (566)
                      .+..+..+++|+.|++++|.+.+..+..+..+++|+.|+++                                 +|.+..
T Consensus       264 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~  343 (680)
T 1ziw_A          264 GNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPG  343 (680)
T ss_dssp             CTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCC
T ss_pred             CcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCC
Confidence            55556666666666666666555544445555555555554                                 444433


Q ss_pred             cCCCChhhhhhccCCCCCCEEEccCCeee--eecchhHhhh-ccCCcEEEccCCCCCCCcchhhhccCCCCeecccCCcc
Q 046712          289 GTTNDLDFITLLTNCTKLEVLDLHSNRFG--GVLPFSLANL-STTMTEIAIGSNQISDTIPDVIANLVNLNALGVESNQL  365 (566)
Q Consensus       289 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~--~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~  365 (566)
                      ..+      ..+..+++|+.|++++|.+.  ......+... .+.|+.|++++|.+++..+..+..+++|+.|++++|.+
T Consensus       344 ~~~------~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l  417 (680)
T 1ziw_A          344 IKS------NMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEI  417 (680)
T ss_dssp             CCT------TTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred             CCh------hHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcC
Confidence            322      23444555555555555422  1111111111 13566666666666666666777777777777777777


Q ss_pred             ccccc-ccccCCCCCCEEEccCCcccccCCccccCCCCCCeEeccCcccc--ccCCCCCcCCCCCcEEEccCCcceeccc
Q 046712          366 AGTIP-LAIGELKSIQILFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQ--GKIPPSNGNCQNLILLTTRKNKLSGIVP  442 (566)
Q Consensus       366 ~~~~~-~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~--~~~~~~~~~~~~L~~L~l~~~~~~~~~~  442 (566)
                      .+..+ ..+.++++|++|++++|.+.+..+..+..+++|+.|++++|.+.  +..|..+..+++|++|++++|.+.+..+
T Consensus       418 ~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~  497 (680)
T 1ziw_A          418 GQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANIND  497 (680)
T ss_dssp             EEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCT
T ss_pred             ccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCCh
Confidence            65433 56777777777777777777666667777777888888777765  4566777788888888888888776555


Q ss_pred             hhhhhhcccceEEEccCCcccccCC--------cCccCCCCCCEEeCccccccccCCccccCCCCCcEEeCCCCcccccC
Q 046712          443 RQLLRIITLSVLLDLSDNLLSGHFP--------TKVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTISI  514 (566)
Q Consensus       443 ~~~~~~~~~l~~L~l~~~~~~~~~~--------~~~~~~~~L~~L~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~  514 (566)
                      ..+..+..+ +.|++++|.+.+...        ..+..+++|+.|++++|++....+..|.++++|++|++++|.++...
T Consensus       498 ~~~~~l~~L-~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~  576 (680)
T 1ziw_A          498 DMLEGLEKL-EILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLP  576 (680)
T ss_dssp             TTTTTCTTC-CEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred             hhhcccccc-CEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCC
Confidence            555555554 888888887775422        23667788888888888887444446778888888888888888655


Q ss_pred             CcCCcCCCCCCEEeCCCCccccccCcccc-ccccCceeecccCcCccc
Q 046712          515 PSTLSSLKSITELDLSRNNLSGHIPQYLE-NLSFLLFLNMSYNHFEGK  561 (566)
Q Consensus       515 ~~~l~~l~~L~~L~l~~n~~~~~~~~~l~-~l~~L~~L~l~~n~~~~~  561 (566)
                      +..|..+++|+.|++++|+++...+..+. .+++|+.|++++|++...
T Consensus       577 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~  624 (680)
T 1ziw_A          577 ASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCT  624 (680)
T ss_dssp             TTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBC
T ss_pred             HhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccC
Confidence            66677888888888888888876666666 678888888888876554

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=4.3e-55  Score=461.26  Aligned_cols=515  Identities=19%  Similarity=0.165  Sum_probs=431.2

Q ss_pred             CcEEEEEcCCCccccccCccCcCCCCCCEEecCCCcccccCCcccCCCCCCCEEeCCCCcCCCcCccccccCCCCcEEEc
Q 046712           34 QRVTGLDLRHQSVGGVLSPFVGNLNFLRSINLPNNSFRGKIPHEVGNLFRLQNLTLTNNYFLGKILTDLSHCSNLMKFEA  113 (566)
Q Consensus        34 ~~~~~l~l~~~~i~~~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l  113 (566)
                      ..+++|++++|.+++..+..|+++++|++|++++|.+.+..|.+|.++++|++|++++|.+.+..+..|+++++|++|++
T Consensus        33 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  112 (606)
T 3t6q_A           33 NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFF  112 (606)
T ss_dssp             TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEEC
T ss_pred             CcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeec
Confidence            68999999999999998999999999999999999999888999999999999999999999888889999999999999


Q ss_pred             CCCcCCCCcchhccCCCCCCEEecccccCCCCCCccccCCCCCCEEEccCCcCcccCCcccccCCccc--Eeecccccce
Q 046712          114 SNNKLEGEIPVKISNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLI--SFNVAYNQFS  191 (566)
Q Consensus       114 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~--~L~l~~~~~~  191 (566)
                      ++|.+++..+..+.++++|++|++++|.+.+.....+..+++|++|++++|.+++..+..+..+++|+  .|++++|.+.
T Consensus       113 ~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~  192 (606)
T 3t6q_A          113 IQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIA  192 (606)
T ss_dssp             TTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCC
T ss_pred             cccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccC
Confidence            99999976678899999999999999999864434555699999999999999877788899999999  8999999999


Q ss_pred             ecCCcccCcccCceEecccccccccCCCCCCCCCCCCc--EEEcccc---cccccCcccccccC--CCCeeecccccccc
Q 046712          192 GMIPPIYNISSLQYIFIHTNRFHGSVPLDNGVNLPNLR--YFSISGN---NLTGSLQDSLSNAT--NLQGLEINRNLFSG  264 (566)
Q Consensus       192 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~--~L~l~~~---~~~~~~~~~l~~~~--~L~~L~l~~~~~~~  264 (566)
                      +..+.......|+.++++++........    .+.++.  .+.+...   .........+..+.  +|+.+++++|.+..
T Consensus       193 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~----~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~  268 (606)
T 3t6q_A          193 GIEPGAFDSAVFQSLNFGGTQNLLVIFK----GLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFN  268 (606)
T ss_dssp             EECTTTTTTCEEEEEECTTCSCHHHHHH----HTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSS
T ss_pred             ccChhHhhhccccccccCCchhHHHHhh----hccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCc
Confidence            8888777778899999988752211111    222222  2322221   11112222333332  68899999999988


Q ss_pred             cccccccCCCCCcEEECCCCccCCcCCCChhhhhhccCCCCCCEEEccCCeeeeecchhHhhhccCCcEEEccCCCCCCC
Q 046712          265 KVSINFSRLQNLSRLNLGENNLGTGTTNDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQISDT  344 (566)
Q Consensus       265 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  344 (566)
                      ..+..|..+++|++|++++|.+...+.       .+..+++|++|++++|.+.+..+..+... +.|++|++++|.+.+.
T Consensus       269 ~~~~~~~~l~~L~~L~l~~n~l~~lp~-------~l~~l~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~l~~n~~~~~  340 (606)
T 3t6q_A          269 ISSNTFHCFSGLQELDLTATHLSELPS-------GLVGLSTLKKLVLSANKFENLCQISASNF-PSLTHLSIKGNTKRLE  340 (606)
T ss_dssp             CCTTTTTTCTTCSEEECTTSCCSCCCS-------SCCSCTTCCEEECTTCCCSBGGGGCGGGC-TTCSEEECCSCSSCCB
T ss_pred             cCHHHhccccCCCEEeccCCccCCCCh-------hhcccccCCEEECccCCcCcCchhhhhcc-CcCCEEECCCCCcccc
Confidence            777778899999999999998876543       36788999999999999887766666554 8999999999988755


Q ss_pred             cc-hhhhccCCCCeecccCCcccccc--cccccCCCCCCEEEccCCcccccCCccccCCCCCCeEeccCccccccCCC-C
Q 046712          345 IP-DVIANLVNLNALGVESNQLAGTI--PLAIGELKSIQILFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPP-S  420 (566)
Q Consensus       345 ~~-~~~~~l~~L~~L~l~~~~~~~~~--~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~-~  420 (566)
                      ++ ..+..+++|++|++++|.+.+..  +..+..+++|++|++++|.+.+..+..+..+++|++|++++|++.+..+. .
T Consensus       341 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~  420 (606)
T 3t6q_A          341 LGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSP  420 (606)
T ss_dssp             CCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCT
T ss_pred             cchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchh
Confidence            54 45888999999999999998665  66788999999999999999877788899999999999999998876654 4


Q ss_pred             CcCCCCCcEEEccCCcceeccchhhhhhcccceEEEccCCccccc---CCcCccCCCCCCEEeCccccccccCCccccCC
Q 046712          421 NGNCQNLILLTTRKNKLSGIVPRQLLRIITLSVLLDLSDNLLSGH---FPTKVGNLKNLVSLDISSNMFSGEIPTTLGGC  497 (566)
Q Consensus       421 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~---~~~~~~~~~~L~~L~ls~~~l~~~~~~~~~~~  497 (566)
                      +..+++|++|++++|.+.+..+..+..++.+ +.|++++|.+.+.   .+..+..+++|+.|++++|++.+..|..|..+
T Consensus       421 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L-~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l  499 (606)
T 3t6q_A          421 FQNLHLLKVLNLSHSLLDISSEQLFDGLPAL-QHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSL  499 (606)
T ss_dssp             TTTCTTCCEEECTTCCCBTTCTTTTTTCTTC-CEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTC
T ss_pred             hhCcccCCEEECCCCccCCcCHHHHhCCCCC-CEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccc
Confidence            8889999999999999987777777766665 9999999998763   33568899999999999999998888899999


Q ss_pred             CCCcEEeCCCCcccccCCcCCcCCCCCCEEeCCCCccccccCccccccccCceeecccCcCcccC
Q 046712          498 TSLEYLGMQDNSFTISIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLLFLNMSYNHFEGKV  562 (566)
Q Consensus       498 ~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~  562 (566)
                      ++|++|++++|.+++..|+++..++.| .|++++|++++..|+.+..+++|+.|++++|+++...
T Consensus       500 ~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c  563 (606)
T 3t6q_A          500 KMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTC  563 (606)
T ss_dssp             TTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSG
T ss_pred             cCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccC
Confidence            999999999999999899999999999 9999999999888889999999999999999887654

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=1.6e-53  Score=449.24  Aligned_cols=512  Identities=19%  Similarity=0.173  Sum_probs=424.2

Q ss_pred             CcEEEEEcCCCccccccCccCcCCCCCCEEecCCCcccccCCcccCCCCCCCEEeCCCCcCCCcCccccccCCCCcEEEc
Q 046712           34 QRVTGLDLRHQSVGGVLSPFVGNLNFLRSINLPNNSFRGKIPHEVGNLFRLQNLTLTNNYFLGKILTDLSHCSNLMKFEA  113 (566)
Q Consensus        34 ~~~~~l~l~~~~i~~~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l  113 (566)
                      +.+++|++++|.+++..+..|.++++|++|++++|.+++..|.+|.++++|++|++++|.+++..+..|+++++|++|++
T Consensus        32 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L  111 (606)
T 3vq2_A           32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVA  111 (606)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEEC
T ss_pred             CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEc
Confidence            68999999999999888889999999999999999999778889999999999999999998888899999999999999


Q ss_pred             CCCcCCCCcchhccCCCCCCEEecccccCCC-CCCccccCCCCCCEEEccCCcCcccCCcccccCCccc----Eeecccc
Q 046712          114 SNNKLEGEIPVKISNLLMLQILNIAENHLKG-QLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLI----SFNVAYN  188 (566)
Q Consensus       114 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~----~L~l~~~  188 (566)
                      ++|.+.+..+..++++++|++|++++|.+.+ .+|..++++++|++|++++|.+++..+..+..+++|+    ++++++|
T Consensus       112 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n  191 (606)
T 3vq2_A          112 VETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLN  191 (606)
T ss_dssp             TTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTC
T ss_pred             cCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCC
Confidence            9999987776789999999999999999875 5789999999999999999999877788787776665    7999999


Q ss_pred             cceecCCcccCcccCceEecccccccccCCCCCCCCCCCCcEEEcccccccc------cCcccccccC--CCCeeec-cc
Q 046712          189 QFSGMIPPIYNISSLQYIFIHTNRFHGSVPLDNGVNLPNLRYFSISGNNLTG------SLQDSLSNAT--NLQGLEI-NR  259 (566)
Q Consensus       189 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~------~~~~~l~~~~--~L~~L~l-~~  259 (566)
                      .+....+......+|+.|++++|.+.+.........++.++.+.+..+.+..      .....+..+.  .++.+.+ ..
T Consensus       192 ~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~  271 (606)
T 3vq2_A          192 PIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYT  271 (606)
T ss_dssp             CCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCC
T ss_pred             CcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheecccc
Confidence            9988887666666899999999877643322333377888887776543321      1111122221  3445555 44


Q ss_pred             ccccccccccccCCCCCcEEECCCCccCCcCCCChhhhhhccCCCCCCEEEccCCeeeeecchhHhhhccCCcEEEccCC
Q 046712          260 NLFSGKVSINFSRLQNLSRLNLGENNLGTGTTNDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSN  339 (566)
Q Consensus       260 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~  339 (566)
                      +.+.+..+. +..+++|+.++++++.+...+        .+..+++|+.|++++|.+ +..|. +  ..+.|++|++++|
T Consensus       272 ~~~~~~~~~-~~~l~~L~~L~l~~~~~~~l~--------~l~~~~~L~~L~l~~n~l-~~lp~-~--~l~~L~~L~l~~n  338 (606)
T 3vq2_A          272 NDFSDDIVK-FHCLANVSAMSLAGVSIKYLE--------DVPKHFKWQSLSIIRCQL-KQFPT-L--DLPFLKSLTLTMN  338 (606)
T ss_dssp             TTCCGGGGS-CGGGTTCSEEEEESCCCCCCC--------CCCTTCCCSEEEEESCCC-SSCCC-C--CCSSCCEEEEESC
T ss_pred             ccccccccc-cccCCCCCEEEecCccchhhh--------hccccccCCEEEcccccC-ccccc-C--CCCccceeeccCC
Confidence            555555554 788899999999999886654        266788999999999998 45563 3  4589999999999


Q ss_pred             CCCCCcchhhhccCCCCeecccCCcccccc--cccccCCCCCCEEEccCCcccccCCccccCCCCCCeEeccCccccccC
Q 046712          340 QISDTIPDVIANLVNLNALGVESNQLAGTI--PLAIGELKSIQILFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKI  417 (566)
Q Consensus       340 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~--~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~  417 (566)
                      ......  .+..+++|++|++++|.+++..  +..+..+++|++|++++|.++ .++..+..+++|+.|++++|++.+..
T Consensus       339 ~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~l~~n~l~~~~  415 (606)
T 3vq2_A          339 KGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVT  415 (606)
T ss_dssp             SSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEE-EECCCCTTCTTCCEEECTTSEEESTT
T ss_pred             cCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccc-cchhhccCCCCCCeeECCCCccCCcc
Confidence            654333  5668899999999999988653  677889999999999999988 46678889999999999999998777


Q ss_pred             C-CCCcCCCCCcEEEccCCcceeccchhhhhhcccceEEEccCCcccc-cCCcCccCCCCCCEEeCccccccccCCcccc
Q 046712          418 P-PSNGNCQNLILLTTRKNKLSGIVPRQLLRIITLSVLLDLSDNLLSG-HFPTKVGNLKNLVSLDISSNMFSGEIPTTLG  495 (566)
Q Consensus       418 ~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~-~~~~~~~~~~~L~~L~ls~~~l~~~~~~~~~  495 (566)
                      + ..+..+++|++|++++|.+.+..+..+..+..+ +.|++++|.+.+ ..+..+..+++|++|++++|.+.+..|..+.
T Consensus       416 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L-~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~  494 (606)
T 3vq2_A          416 EFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSL-NTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFD  494 (606)
T ss_dssp             TTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTC-CEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTT
T ss_pred             ChhhhhccccCCEEECcCCCCCccchhhhcCCCCC-CEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhc
Confidence            6 678899999999999999998888777777666 999999999987 4788899999999999999999988888899


Q ss_pred             CCCCCcEEeCCCCcccccCCcCCcCCCCCCEEeCCCCccccccCccccccc-cCceeecccCcCcccCC
Q 046712          496 GCTSLEYLGMQDNSFTISIPSTLSSLKSITELDLSRNNLSGHIPQYLENLS-FLLFLNMSYNHFEGKVP  563 (566)
Q Consensus       496 ~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~-~L~~L~l~~n~~~~~~p  563 (566)
                      .+++|++|++++|.+++..|+.+..+++|++|++++|+++ .+|..+..++ +|+.|++++|+++...|
T Consensus       495 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~  562 (606)
T 3vq2_A          495 TLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICE  562 (606)
T ss_dssp             TCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSST
T ss_pred             ccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCc
Confidence            9999999999999999888999999999999999999998 6777788887 69999999998886544

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=5.7e-52  Score=443.30  Aligned_cols=521  Identities=18%  Similarity=0.163  Sum_probs=400.5

Q ss_pred             EEEcCCCccccccCccCcCCCCCCEEecCCCcccccCCcccCCCCCCCEEeCCCCcCCCcCccccccCCCCcEEEcCCCc
Q 046712           38 GLDLRHQSVGGVLSPFVGNLNFLRSINLPNNSFRGKIPHEVGNLFRLQNLTLTNNYFLGKILTDLSHCSNLMKFEASNNK  117 (566)
Q Consensus        38 ~l~l~~~~i~~~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~  117 (566)
                      .++.++++++. +|..+.  +++++|++++|.+++..+.+|.++++|++|++++|.+++..+..|+++++|++|++++|.
T Consensus         8 ~~~cs~~~L~~-ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~   84 (680)
T 1ziw_A            8 VADCSHLKLTQ-VPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE   84 (680)
T ss_dssp             EEECCSSCCSS-CCSCSC--TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSC
T ss_pred             eeECCCCCccc-cccccC--CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCc
Confidence            46667777774 444444  799999999999997777789999999999999999998889999999999999999999


Q ss_pred             CCCCcchhccCCCCCCEEecccccCCCCCCccccCCCCCCEEEccCCcCcccCCcccccCCcccEeecccccceecCC-c
Q 046712          118 LEGEIPVKISNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVAYNQFSGMIP-P  196 (566)
Q Consensus       118 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~  196 (566)
                      ++...+..+.++++|++|++++|.+.+..+..++.+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+ .
T Consensus        85 l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~  164 (680)
T 1ziw_A           85 LSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEE  164 (680)
T ss_dssp             CCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHH
T ss_pred             cCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHH
Confidence            996666679999999999999999987667889999999999999999998888889999999999999999887665 2


Q ss_pred             --ccCcccCceEecccccccccCCCCCCC--------------------------CCCCCcEEEcccccccccCcccccc
Q 046712          197 --IYNISSLQYIFIHTNRFHGSVPLDNGV--------------------------NLPNLRYFSISGNNLTGSLQDSLSN  248 (566)
Q Consensus       197 --l~~~~~L~~L~l~~~~~~~~~~~~~~~--------------------------~~~~L~~L~l~~~~~~~~~~~~l~~  248 (566)
                        ...+++|++|++++|.+.+..+.....                          ..++|+.|++++|.+.+..+..+..
T Consensus       165 ~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~  244 (680)
T 1ziw_A          165 LDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLG  244 (680)
T ss_dssp             HGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGG
T ss_pred             hhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhc
Confidence              335689999999999887544432210                          1257888888888888777777877


Q ss_pred             cC--CCCeeecccccccccccccccCCCCCcEEECCCCccCCcCCCChhh---------------------------hhh
Q 046712          249 AT--NLQGLEINRNLFSGKVSINFSRLQNLSRLNLGENNLGTGTTNDLDF---------------------------ITL  299 (566)
Q Consensus       249 ~~--~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~---------------------------~~~  299 (566)
                      ++  +|+.|++++|.+....+..+..+++|++|++++|.+....+..+..                           ...
T Consensus       245 l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~  324 (680)
T 1ziw_A          245 LKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFS  324 (680)
T ss_dssp             GGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTT
T ss_pred             cCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhh
Confidence            75  4999999999998888788999999999999999887665421110                           002


Q ss_pred             ccCCCCCCEEEccCCeeeeecchhHhhhccCCcEEEccCCCCCCC--cchhhhc--cCCCCeecccCCcccccccccccC
Q 046712          300 LTNCTKLEVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQISDT--IPDVIAN--LVNLNALGVESNQLAGTIPLAIGE  375 (566)
Q Consensus       300 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~~~--l~~L~~L~l~~~~~~~~~~~~~~~  375 (566)
                      +..+++|+.|++++|.+.+..+..+... +.|++|++++|.+...  ....+..  .++|+.|++++|.+++..+..+..
T Consensus       325 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~  403 (680)
T 1ziw_A          325 FQWLKCLEHLNMEDNDIPGIKSNMFTGL-INLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSW  403 (680)
T ss_dssp             TTTCTTCCEEECCSCCBCCCCTTTTTTC-TTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTT
T ss_pred             cccCCCCCEEECCCCccCCCChhHhccc-cCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhC
Confidence            2334444444444444444333333222 4455555554443211  1111211  135556666666666666677778


Q ss_pred             CCCCCEEEccCCcccccCC-ccccCCCCCCeEeccCccccccCCCCCcCCCCCcEEEccCCcce--eccchhhhhhcccc
Q 046712          376 LKSIQILFLNENFLRGTIP-SSLGNLTLLTQLILEVNNLQGKIPPSNGNCQNLILLTTRKNKLS--GIVPRQLLRIITLS  452 (566)
Q Consensus       376 ~~~L~~L~l~~n~~~~~~~-~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~--~~~~~~~~~~~~~l  452 (566)
                      +++|++|++++|.+.+.++ ..+..+++|++|++++|++.+..+..+..+++|+.|++++|.+.  +..|..+..+..+ 
T Consensus       404 l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L-  482 (680)
T 1ziw_A          404 LGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNL-  482 (680)
T ss_dssp             CTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTC-
T ss_pred             CCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCC-
Confidence            8888888888888875554 57778888888888888887777778888888888888888775  3456666666555 


Q ss_pred             eEEEccCCcccccCCcCccCCCCCCEEeCccccccccCC--------ccccCCCCCcEEeCCCCcccccCCcCCcCCCCC
Q 046712          453 VLLDLSDNLLSGHFPTKVGNLKNLVSLDISSNMFSGEIP--------TTLGGCTSLEYLGMQDNSFTISIPSTLSSLKSI  524 (566)
Q Consensus       453 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~l~~~~~--------~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L  524 (566)
                      +.|++++|.+.+..+..|..+++|++|++++|++.+..+        ..+.++++|++|++++|.++...++.|..+++|
T Consensus       483 ~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L  562 (680)
T 1ziw_A          483 TILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFEL  562 (680)
T ss_dssp             CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred             CEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCc
Confidence            999999999998888888999999999999999874321        237888999999999999995555678999999


Q ss_pred             CEEeCCCCccccccCccccccccCceeecccCcCcccCC
Q 046712          525 TELDLSRNNLSGHIPQYLENLSFLLFLNMSYNHFEGKVP  563 (566)
Q Consensus       525 ~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p  563 (566)
                      +.|++++|+++...+..|..+++|+.|++++|++++..|
T Consensus       563 ~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~  601 (680)
T 1ziw_A          563 KIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEK  601 (680)
T ss_dssp             CEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCH
T ss_pred             ceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccCh
Confidence            999999999997777778899999999999999987654

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=1.8e-51  Score=433.72  Aligned_cols=510  Identities=17%  Similarity=0.157  Sum_probs=423.7

Q ss_pred             EEEcCCCccccccCccCcCCCCCCEEecCCCcccccCCcccCCCCCCCEEeCCCCcCCCcCccccccCCCCcEEEcCCCc
Q 046712           38 GLDLRHQSVGGVLSPFVGNLNFLRSINLPNNSFRGKIPHEVGNLFRLQNLTLTNNYFLGKILTDLSHCSNLMKFEASNNK  117 (566)
Q Consensus        38 ~l~l~~~~i~~~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~  117 (566)
                      .++.++..++ .+|..+.  +++++|++++|.+++..|.+|.++++|++|++++|.+....+..|.++++|++|++++|.
T Consensus        16 ~~~c~~~~l~-~iP~~l~--~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~   92 (606)
T 3t6q_A           16 TYNCENLGLN-EIPGTLP--NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANP   92 (606)
T ss_dssp             EEECTTSCCS-SCCTTSC--TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred             eEECCCCCcc-cCcCCCC--CcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCc
Confidence            3444555555 3444443  479999999999998889999999999999999999998889999999999999999999


Q ss_pred             CCCCcchhccCCCCCCEEecccccCCCCCCccccCCCCCCEEEccCCcCcccCCcccccCCcccEeecccccceecCC-c
Q 046712          118 LEGEIPVKISNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVAYNQFSGMIP-P  196 (566)
Q Consensus       118 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~  196 (566)
                      +.+..|..+.++++|++|++++|.+.+..+..++.+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+..+ .
T Consensus        93 l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~  172 (606)
T 3t6q_A           93 LIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKED  172 (606)
T ss_dssp             CSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHH
T ss_pred             ccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhh
Confidence            997888899999999999999999996667889999999999999999986444555569999999999999988766 6


Q ss_pred             ccCcccCc--eEecccccccccCCCCCCCCCCCCcEEEcccccccccCcccccccCCCCeeecccccc-----ccccccc
Q 046712          197 IYNISSLQ--YIFIHTNRFHGSVPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINRNLF-----SGKVSIN  269 (566)
Q Consensus       197 l~~~~~L~--~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~-----~~~~~~~  269 (566)
                      +..+++|+  .|++++|.+.+..+.. + ....|+.|+++++...   +..+..+..+....+.-..+     .......
T Consensus       173 ~~~l~~L~~l~L~l~~n~l~~~~~~~-~-~~~~L~~L~l~~~~~~---~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~  247 (606)
T 3t6q_A          173 MSSLQQATNLSLNLNGNDIAGIEPGA-F-DSAVFQSLNFGGTQNL---LVIFKGLKNSTIQSLWLGTFEDMDDEDISPAV  247 (606)
T ss_dssp             HHTTTTCCSEEEECTTCCCCEECTTT-T-TTCEEEEEECTTCSCH---HHHHHHTTTCEEEEEECCCCTTSCCCCCCGGG
T ss_pred             hhhhcccceeEEecCCCccCccChhH-h-hhccccccccCCchhH---HHHhhhccccchhheechhhccccccccChhH
Confidence            77888998  8999999988655444 3 4578999999988522   22333444333322221111     1122223


Q ss_pred             ccCCC--CCcEEECCCCccCCcCCCChhhhhhccCCCCCCEEEccCCeeeeecchhHhhhccCCcEEEccCCCCCCCcch
Q 046712          270 FSRLQ--NLSRLNLGENNLGTGTTNDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQISDTIPD  347 (566)
Q Consensus       270 ~~~~~--~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~  347 (566)
                      +..+.  +|+.+++++|.+....+      ..+..+++|+.|++++|.+. ..|..+.. .+.|++|++++|.+.+..+.
T Consensus       248 ~~~l~~~~L~~L~l~~n~l~~~~~------~~~~~l~~L~~L~l~~n~l~-~lp~~l~~-l~~L~~L~l~~n~l~~~~~~  319 (606)
T 3t6q_A          248 FEGLCEMSVESINLQKHYFFNISS------NTFHCFSGLQELDLTATHLS-ELPSGLVG-LSTLKKLVLSANKFENLCQI  319 (606)
T ss_dssp             GGGGGGSEEEEEECTTCCCSSCCT------TTTTTCTTCSEEECTTSCCS-CCCSSCCS-CTTCCEEECTTCCCSBGGGG
T ss_pred             hchhhcCceeEEEeecCccCccCH------HHhccccCCCEEeccCCccC-CCChhhcc-cccCCEEECccCCcCcCchh
Confidence            33333  79999999999988766      45778999999999999988 55655544 38999999999999987788


Q ss_pred             hhhccCCCCeecccCCcccccc-cccccCCCCCCEEEccCCcccccC--CccccCCCCCCeEeccCccccccCCCCCcCC
Q 046712          348 VIANLVNLNALGVESNQLAGTI-PLAIGELKSIQILFLNENFLRGTI--PSSLGNLTLLTQLILEVNNLQGKIPPSNGNC  424 (566)
Q Consensus       348 ~~~~l~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~n~~~~~~--~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~  424 (566)
                      .+..+++|++|++++|.+.+.. +..+..+++|++|++++|.+++..  +..+..+++|++|++++|.+.+..+..+..+
T Consensus       320 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l  399 (606)
T 3t6q_A          320 SASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKEC  399 (606)
T ss_dssp             CGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTC
T ss_pred             hhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCC
Confidence            8999999999999999987544 445889999999999999998655  6788999999999999999998888999999


Q ss_pred             CCCcEEEccCCcceeccchhhhhhcccceEEEccCCcccccCCcCccCCCCCCEEeCcccccccc---CCccccCCCCCc
Q 046712          425 QNLILLTTRKNKLSGIVPRQLLRIITLSVLLDLSDNLLSGHFPTKVGNLKNLVSLDISSNMFSGE---IPTTLGGCTSLE  501 (566)
Q Consensus       425 ~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~l~~~---~~~~~~~~~~L~  501 (566)
                      ++|++|++++|.+.+..+.......+.++.|++++|.+.+..+..+..+++|++|++++|++.+.   .+..+..+++|+
T Consensus       400 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~  479 (606)
T 3t6q_A          400 PQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLE  479 (606)
T ss_dssp             TTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCC
T ss_pred             ccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCcc
Confidence            99999999999998776655334444559999999999988888999999999999999999752   235688999999


Q ss_pred             EEeCCCCcccccCCcCCcCCCCCCEEeCCCCccccccCccccccccCceeecccCcCcccCCC
Q 046712          502 YLGMQDNSFTISIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLLFLNMSYNHFEGKVPI  564 (566)
Q Consensus       502 ~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~  564 (566)
                      +|++++|.+++..|.+|..+++|++|++++|++++..|+.+..+++| .|++++|++++..|.
T Consensus       480 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~  541 (606)
T 3t6q_A          480 ILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPS  541 (606)
T ss_dssp             EEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGG
T ss_pred             EEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHh
Confidence            99999999998889999999999999999999999999999999999 999999999987764

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=8.2e-50  Score=420.99  Aligned_cols=505  Identities=18%  Similarity=0.170  Sum_probs=419.1

Q ss_pred             EEEEcCCCccccccCccCcCCCCCCEEecCCCcccccCCcccCCCCCCCEEeCCCCcCCCcCccccccCCCCcEEEcCCC
Q 046712           37 TGLDLRHQSVGGVLSPFVGNLNFLRSINLPNNSFRGKIPHEVGNLFRLQNLTLTNNYFLGKILTDLSHCSNLMKFEASNN  116 (566)
Q Consensus        37 ~~l~l~~~~i~~~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~  116 (566)
                      ++++.++++++.. |..+.  +++++|++++|.+++..+.+|.++++|++|++++|.+++..+..|.++++|++|++++|
T Consensus        14 ~~~~c~~~~l~~i-p~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n   90 (606)
T 3vq2_A           14 ITYQCMDQKLSKV-PDDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGN   90 (606)
T ss_dssp             TEEECTTSCCSSC-CTTSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC
T ss_pred             CceEccCCCcccC-CCCCC--CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCC
Confidence            3577778888754 43343  89999999999999888889999999999999999999888889999999999999999


Q ss_pred             cCCCCcchhccCCCCCCEEecccccCCCCCCccccCCCCCCEEEccCCcCcc-cCCcccccCCcccEeecccccceecCC
Q 046712          117 KLEGEIPVKISNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGG-RIPSTISHVRNLISFNVAYNQFSGMIP  195 (566)
Q Consensus       117 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~  195 (566)
                      .+++..|..+.++++|++|++++|.+.+..+..++.+++|++|++++|.+.+ .+|..++++++|+.|++++|.+.+..+
T Consensus        91 ~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~  170 (606)
T 3vq2_A           91 PIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITV  170 (606)
T ss_dssp             CCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECT
T ss_pred             cccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecCh
Confidence            9998889999999999999999999986666889999999999999999975 569999999999999999999988766


Q ss_pred             -cccCcccCc----eEecccccccccCCCCCCCCCCCCcEEEccccccc-ccCcccccccCCCCeeeccccccccc----
Q 046712          196 -PIYNISSLQ----YIFIHTNRFHGSVPLDNGVNLPNLRYFSISGNNLT-GSLQDSLSNATNLQGLEINRNLFSGK----  265 (566)
Q Consensus       196 -~l~~~~~L~----~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~l~~~~~L~~L~l~~~~~~~~----  265 (566)
                       .+..+.+++    ++++++|.+. .++...+ ...+|++|++++|.+. ...+..+..++.++.+.+....+...    
T Consensus       171 ~~~~~l~~L~~~l~~L~l~~n~l~-~~~~~~~-~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~  248 (606)
T 3vq2_A          171 NDLQFLRENPQVNLSLDMSLNPID-FIQDQAF-QGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLE  248 (606)
T ss_dssp             TTTHHHHHCTTCCCEEECTTCCCC-EECTTTT-TTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCS
T ss_pred             hhhhhhhccccccceeeccCCCcc-eeCcccc-cCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCccc
Confidence             566666554    8999999987 4555555 3448999999999875 34566678888888887754433211    


Q ss_pred             --ccccccCCC--CCcEEEC-CCCccCCcCCCChhhhhhccCCCCCCEEEccCCeeeeecchhHhhhccCCcEEEccCCC
Q 046712          266 --VSINFSRLQ--NLSRLNL-GENNLGTGTTNDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQ  340 (566)
Q Consensus       266 --~~~~~~~~~--~L~~L~l-~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~  340 (566)
                        ....+..+.  .++.+++ ..+.+....+       .+..+++|+.|+++++.+.. .+ .+.. .+.|++|++.+|.
T Consensus       249 ~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~-------~~~~l~~L~~L~l~~~~~~~-l~-~l~~-~~~L~~L~l~~n~  318 (606)
T 3vq2_A          249 IFEPSIMEGLCDVTIDEFRLTYTNDFSDDIV-------KFHCLANVSAMSLAGVSIKY-LE-DVPK-HFKWQSLSIIRCQ  318 (606)
T ss_dssp             CCCGGGGTTGGGSEEEEEEECCCTTCCGGGG-------SCGGGTTCSEEEEESCCCCC-CC-CCCT-TCCCSEEEEESCC
T ss_pred             ccChHHhhhhhhccHhheecccccccccccc-------ccccCCCCCEEEecCccchh-hh-hccc-cccCCEEEccccc
Confidence              111122222  3555666 3344433222       26778999999999999874 34 3333 3799999999999


Q ss_pred             CCCCcchhhhccCCCCeecccCCcccccccccccCCCCCCEEEccCCccccc--CCccccCCCCCCeEeccCccccccCC
Q 046712          341 ISDTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSIQILFLNENFLRGT--IPSSLGNLTLLTQLILEVNNLQGKIP  418 (566)
Q Consensus       341 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~--~~~~~~~~~~L~~L~l~~~~l~~~~~  418 (566)
                      + +.+|. + .+++|++|++++|...+..  .+..+++|++|++++|.+++.  .+..+..+++|++|++++|.+.+ ++
T Consensus       319 l-~~lp~-~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~  392 (606)
T 3vq2_A          319 L-KQFPT-L-DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MS  392 (606)
T ss_dssp             C-SSCCC-C-CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-EC
T ss_pred             C-ccccc-C-CCCccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-ch
Confidence            9 56774 4 8999999999999655333  577899999999999999855  37788999999999999999884 56


Q ss_pred             CCCcCCCCCcEEEccCCcceeccc-hhhhhhcccceEEEccCCcccccCCcCccCCCCCCEEeCccccccc-cCCccccC
Q 046712          419 PSNGNCQNLILLTTRKNKLSGIVP-RQLLRIITLSVLLDLSDNLLSGHFPTKVGNLKNLVSLDISSNMFSG-EIPTTLGG  496 (566)
Q Consensus       419 ~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~l~~-~~~~~~~~  496 (566)
                      ..+..+++|+.|++++|.+.+..+ ..+..+.. ++.|++++|.+.+..+..+..+++|++|++++|.+.+ ..|..+..
T Consensus       393 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~-L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~  471 (606)
T 3vq2_A          393 ANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEK-LLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFAN  471 (606)
T ss_dssp             CCCTTCTTCCEEECTTSEEESTTTTTTTTTCTT-CCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTT
T ss_pred             hhccCCCCCCeeECCCCccCCccChhhhhcccc-CCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhcc
Confidence            889999999999999999998777 44555544 4999999999998899999999999999999999986 47888999


Q ss_pred             CCCCcEEeCCCCcccccCCcCCcCCCCCCEEeCCCCccccccCccccccccCceeecccCcCcccCCC
Q 046712          497 CTSLEYLGMQDNSFTISIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLLFLNMSYNHFEGKVPI  564 (566)
Q Consensus       497 ~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~  564 (566)
                      +++|++|++++|.+++..|+.+..+++|++|++++|++++.+|..+..+++|+.|++++|+++ .+|.
T Consensus       472 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~  538 (606)
T 3vq2_A          472 TTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKG  538 (606)
T ss_dssp             CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEES
T ss_pred             CCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCH
Confidence            999999999999999888999999999999999999999989999999999999999999998 5554

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=5.7e-50  Score=435.60  Aligned_cols=517  Identities=20%  Similarity=0.190  Sum_probs=419.4

Q ss_pred             CcccccccCCCCCcEEEEEcCCCccccccCccCcCCCCCCEEecCCCccccc-CCcccCCCCCCCEEeCCCCcCCCcCcc
Q 046712           22 CQWTGVTCGHRRQRVTGLDLRHQSVGGVLSPFVGNLNFLRSINLPNNSFRGK-IPHEVGNLFRLQNLTLTNNYFLGKILT  100 (566)
Q Consensus        22 ~~~~~~~~~~~~~~~~~l~l~~~~i~~~~~~~~~~l~~L~~L~ls~~~l~~~-~~~~~~~l~~L~~L~l~~~~l~~~~~~  100 (566)
                      +.|..+.+  ..+.+++|+|++|.+++..+..|.++++|++|++++|..... .|.+|.++++|++|++++|.+.+..+.
T Consensus        14 ~~L~~vP~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~   91 (844)
T 3j0a_A           14 CNLTQVPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPD   91 (844)
T ss_dssp             CCSSCCCS--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTT
T ss_pred             CCCCCCCC--CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHh
Confidence            57777766  448999999999999999999999999999999999955444 488999999999999999999988899


Q ss_pred             ccccCCCCcEEEcCCCcCCCCcchh--ccCCCCCCEEecccccCCCCCC-ccccCCCCCCEEEccCCcCcccCCcccccC
Q 046712          101 DLSHCSNLMKFEASNNKLEGEIPVK--ISNLLMLQILNIAENHLKGQLP-ASIGNLSALQEIDVRGNRLGGRIPSTISHV  177 (566)
Q Consensus       101 ~~~~l~~L~~L~l~~~~~~~~~~~~--l~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l  177 (566)
                      .|.++++|++|++++|.+.+..+..  +.++++|++|++++|.+.+..+ ..++++++|++|++++|.+.+..+..+..+
T Consensus        92 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l  171 (844)
T 3j0a_A           92 AFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPL  171 (844)
T ss_dssp             SSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHH
T ss_pred             HccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccc
Confidence            9999999999999999998766655  8899999999999999986544 578999999999999999998888888887


Q ss_pred             --CcccEeecccccceecCC-cccCccc------CceEecccccccccCCCCCCC--CCCCCcEEEccccc---------
Q 046712          178 --RNLISFNVAYNQFSGMIP-PIYNISS------LQYIFIHTNRFHGSVPLDNGV--NLPNLRYFSISGNN---------  237 (566)
Q Consensus       178 --~~L~~L~l~~~~~~~~~~-~l~~~~~------L~~L~l~~~~~~~~~~~~~~~--~~~~L~~L~l~~~~---------  237 (566)
                        ++|+.|++++|.+.+..+ .+..++.      |+.|++++|.+.+..+.....  ....++.+.+..+.         
T Consensus       172 ~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~  251 (844)
T 3j0a_A          172 QGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHN  251 (844)
T ss_dssp             HHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSS
T ss_pred             cCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccc
Confidence              899999999998877555 4444444      999999999887666554432  23567788776332         


Q ss_pred             ccccCccccccc--CCCCeeecccccccccccccccCCCCCcEEECCCCccCCcCCCChhhhhhccCCCCCCEEEccCCe
Q 046712          238 LTGSLQDSLSNA--TNLQGLEINRNLFSGKVSINFSRLQNLSRLNLGENNLGTGTTNDLDFITLLTNCTKLEVLDLHSNR  315 (566)
Q Consensus       238 ~~~~~~~~l~~~--~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~  315 (566)
                      +.......+..+  ++|+.|++++|.+....+..+..+++|+.|++++|.+....+      ..+..+++|+.|++++|.
T Consensus       252 l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~------~~~~~l~~L~~L~Ls~N~  325 (844)
T 3j0a_A          252 IKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIAD------EAFYGLDNLQVLNLSYNL  325 (844)
T ss_dssp             STTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECT------TTTTTCSSCCEEEEESCC
T ss_pred             cCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCCh------HHhcCCCCCCEEECCCCC
Confidence            222223334443  689999999999888777888899999999999998887665      456788999999999999


Q ss_pred             eeeecchhHhhhccCCcEEEccCCCCCCCcchhhhccCCCCeecccCCcccccccccccCCCCCCEEEccCCcccccCCc
Q 046712          316 FGGVLPFSLANLSTTMTEIAIGSNQISDTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSIQILFLNENFLRGTIPS  395 (566)
Q Consensus       316 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~  395 (566)
                      +.+..+..+... +.|+.|++++|.+....+..+..+++|++|++++|.+++     +..+++|+.+++++|.++ .++.
T Consensus       326 l~~~~~~~~~~l-~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~-----i~~~~~L~~L~l~~N~l~-~l~~  398 (844)
T 3j0a_A          326 LGELYSSNFYGL-PKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTT-----IHFIPSIPDIFLSGNKLV-TLPK  398 (844)
T ss_dssp             CSCCCSCSCSSC-TTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCC-----CSSCCSCSEEEEESCCCC-CCCC
T ss_pred             CCccCHHHhcCC-CCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCc-----ccCCCCcchhccCCCCcc-cccc
Confidence            887766666554 789999999999987777788889999999999998873     234788999999999987 4443


Q ss_pred             cccCCCCCCeEeccCccccccCC-CCCcCCCCCcEEEccCCcceeccchhhhhhcccceEEEccCCcccc-----cCCcC
Q 046712          396 SLGNLTLLTQLILEVNNLQGKIP-PSNGNCQNLILLTTRKNKLSGIVPRQLLRIITLSVLLDLSDNLLSG-----HFPTK  469 (566)
Q Consensus       396 ~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~-----~~~~~  469 (566)
                      .   ..+++.|++++|.+.+... ..+..+++|+.|++++|++.+..+.......+.++.|++++|.+..     ..+..
T Consensus       399 ~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~  475 (844)
T 3j0a_A          399 I---NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDV  475 (844)
T ss_dssp             C---CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSC
T ss_pred             c---ccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhh
Confidence            3   4678999999998874322 2244789999999999998865444333334556899999998863     34456


Q ss_pred             ccCCCCCCEEeCccccccccCCccccCCCCCcEEeCCCCcccccCCcCCcCCCCCCEEeCCCCccccccCccccccccCc
Q 046712          470 VGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTISIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLL  549 (566)
Q Consensus       470 ~~~~~~L~~L~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~  549 (566)
                      |..+++|+.|++++|++++..+..|.++++|++|+|++|.++...+..+.  ++|+.|++++|++++..|..+.   +|+
T Consensus       476 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~~---~L~  550 (844)
T 3j0a_A          476 FEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVFV---SLS  550 (844)
T ss_dssp             SSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCCS---SCC
T ss_pred             hcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhHhC---CcC
Confidence            78889999999999999988888899999999999999999976666666  8999999999999988887754   788


Q ss_pred             eeecccCcCccc
Q 046712          550 FLNMSYNHFEGK  561 (566)
Q Consensus       550 ~L~l~~n~~~~~  561 (566)
                      .|++++|++...
T Consensus       551 ~l~l~~Np~~C~  562 (844)
T 3j0a_A          551 VLDITHNKFICE  562 (844)
T ss_dssp             EEEEEEECCCCS
T ss_pred             EEEecCCCcccc
Confidence            999999987653

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=1.5e-48  Score=408.71  Aligned_cols=491  Identities=19%  Similarity=0.213  Sum_probs=314.1

Q ss_pred             CcEEEEEcCCCccccccCccCcCCCCCCEEecCCCcccccCCcccCCCCCCCEEeCCCCcCCCcCccccccCCCCcEEEc
Q 046712           34 QRVTGLDLRHQSVGGVLSPFVGNLNFLRSINLPNNSFRGKIPHEVGNLFRLQNLTLTNNYFLGKILTDLSHCSNLMKFEA  113 (566)
Q Consensus        34 ~~~~~l~l~~~~i~~~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l  113 (566)
                      +.+++|++++|.+++..+.+|..+++|++|++++|.+++..+.+|.++++|++|++++|.++...+..|.++++|++|++
T Consensus        28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  107 (570)
T 2z63_A           28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA  107 (570)
T ss_dssp             SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred             ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccc
Confidence            57889999999998888888999999999999999888777788899999999999999888777788899999999999


Q ss_pred             CCCcCCCCcchhccCCCCCCEEecccccCCC-CCCccccCCCCCCEEEccCCcCcccCCcccccCCcc----cEeecccc
Q 046712          114 SNNKLEGEIPVKISNLLMLQILNIAENHLKG-QLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNL----ISFNVAYN  188 (566)
Q Consensus       114 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L----~~L~l~~~  188 (566)
                      ++|.+++..+..++++++|++|++++|.+.+ .+|..++++++|++|++++|.+++..+..++.+++|    +.+++++|
T Consensus       108 ~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n  187 (570)
T 2z63_A          108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN  187 (570)
T ss_dssp             TTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTC
T ss_pred             cccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCC
Confidence            9998886555568889999999999998875 468889999999999999998887777778888877    78888888


Q ss_pred             cceecCCcccCcccCceEecccccccccCCCCCCCCCCCCcEEEcccccc------cccCcccccccCC--CCeeecccc
Q 046712          189 QFSGMIPPIYNISSLQYIFIHTNRFHGSVPLDNGVNLPNLRYFSISGNNL------TGSLQDSLSNATN--LQGLEINRN  260 (566)
Q Consensus       189 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~------~~~~~~~l~~~~~--L~~L~l~~~  260 (566)
                      .+....+.......|+.|+++++.............++.++...+....+      .......+..+++  ++.+++.++
T Consensus       188 ~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~  267 (570)
T 2z63_A          188 PMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYL  267 (570)
T ss_dssp             CCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEET
T ss_pred             CceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcc
Confidence            88877775554457888888776332111111111445555544432211      1111122222222  233444443


Q ss_pred             -cccccccccccCCCCCcEEECCCCccCCcCCCChhhhhhccCCCCCCEEEccCCeeeeecchhHhhhccCCcEEEccCC
Q 046712          261 -LFSGKVSINFSRLQNLSRLNLGENNLGTGTTNDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSN  339 (566)
Q Consensus       261 -~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~  339 (566)
                       .+.+..+..+..+++|+.|+++++.+...+.       .+..+ +|+.|++++|.+. ..|.   ...+.|++|++.+|
T Consensus       268 ~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~-------~~~~~-~L~~L~l~~n~~~-~l~~---~~l~~L~~L~l~~n  335 (570)
T 2z63_A          268 DYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD-------FSYNF-GWQHLELVNCKFG-QFPT---LKLKSLKRLTFTSN  335 (570)
T ss_dssp             TEEESCSTTTTGGGTTCSEEEEESCEECSCCB-------CCSCC-CCSEEEEESCBCS-SCCB---CBCSSCCEEEEESC
T ss_pred             hhhhhhchhhhcCcCcccEEEecCccchhhhh-------hhccC-CccEEeeccCccc-ccCc---ccccccCEEeCcCC
Confidence             3333444445555666666666665543322       13334 5666666666554 2222   12245555555555


Q ss_pred             CCCCCcchhhhccCCCCeecccCCcccccc--cccccCCCCCCEEEccCCcccccCCccccCCCCCCeEeccCccccccC
Q 046712          340 QISDTIPDVIANLVNLNALGVESNQLAGTI--PLAIGELKSIQILFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKI  417 (566)
Q Consensus       340 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~--~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~  417 (566)
                      .+....+.  ..+++|++|++++|.+++..  +..+..+++|++|++++|.+.+. +..+..+++|++|++++|.+.+..
T Consensus       336 ~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~~~l~~L~~L~l~~n~l~~~~  412 (570)
T 2z63_A          336 KGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITM-SSNFLGLEQLEHLDFQHSNLKQMS  412 (570)
T ss_dssp             BSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEE-EEEEETCTTCCEEECTTSEEESCT
T ss_pred             cccccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccc-cccccccCCCCEEEccCCcccccc
Confidence            55433332  44555555555555554332  34445555555555555555532 222555555555555555555433


Q ss_pred             C-CCCcCCCCCcEEEccCCcceeccchhhhhhcccceEEEccCCcccccCCcCccCCCCCCEEeCcccccc-ccCCcccc
Q 046712          418 P-PSNGNCQNLILLTTRKNKLSGIVPRQLLRIITLSVLLDLSDNLLSGHFPTKVGNLKNLVSLDISSNMFS-GEIPTTLG  495 (566)
Q Consensus       418 ~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~l~-~~~~~~~~  495 (566)
                      + ..+..+++|++|++++|                         .+.+..+..+..+++|++|++++|.+. +.+|..+.
T Consensus       413 ~~~~~~~l~~L~~L~l~~n-------------------------~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~  467 (570)
T 2z63_A          413 EFSVFLSLRNLIYLDISHT-------------------------HTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFT  467 (570)
T ss_dssp             TSCTTTTCTTCCEEECTTS-------------------------CCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCT
T ss_pred             chhhhhcCCCCCEEeCcCC-------------------------cccccchhhhhcCCcCcEEECcCCcCccccchhhhh
Confidence            3 23444555555555544                         444445555666677777777777665 34666667


Q ss_pred             CCCCCcEEeCCCCcccccCCcCCcCCCCCCEEeCCCCccccccCccccccccCceeecccCcCcccCCC
Q 046712          496 GCTSLEYLGMQDNSFTISIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLLFLNMSYNHFEGKVPI  564 (566)
Q Consensus       496 ~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~  564 (566)
                      .+++|++|++++|.+++..|.++..+++|++|++++|++++..|..+..+++|+.|++++|++++..|.
T Consensus       468 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~  536 (570)
T 2z63_A          468 ELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR  536 (570)
T ss_dssp             TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred             cccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcc
Confidence            777777777777777766666777777777777777777766666667777777777777777766653

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=4.6e-48  Score=420.58  Aligned_cols=505  Identities=20%  Similarity=0.200  Sum_probs=416.5

Q ss_pred             EEEEcCCCccccccCccCcCCCCCCEEecCCCcccccCCcccCCCCCCCEEeCCCCcCCC-cCccccccCCCCcEEEcCC
Q 046712           37 TGLDLRHQSVGGVLSPFVGNLNFLRSINLPNNSFRGKIPHEVGNLFRLQNLTLTNNYFLG-KILTDLSHCSNLMKFEASN  115 (566)
Q Consensus        37 ~~l~l~~~~i~~~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~l~~~~l~~-~~~~~~~~l~~L~~L~l~~  115 (566)
                      +..+.++++++..+.    ..++|++|++++|.+++..+.+|.++++|++|++++|.... ..+..|.++++|++|++++
T Consensus         7 ~~~dcs~~~L~~vP~----lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~   82 (844)
T 3j0a_A            7 RIAFYRFCNLTQVPQ----VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGS   82 (844)
T ss_dssp             EEEEESCCCSSCCCS----SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTT
T ss_pred             eEEEccCCCCCCCCC----CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCC
Confidence            566777888885543    45899999999999998889999999999999999995543 4478899999999999999


Q ss_pred             CcCCCCcchhccCCCCCCEEecccccCCCCCCcc--ccCCCCCCEEEccCCcCcccCC-cccccCCcccEeeccccccee
Q 046712          116 NKLEGEIPVKISNLLMLQILNIAENHLKGQLPAS--IGNLSALQEIDVRGNRLGGRIP-STISHVRNLISFNVAYNQFSG  192 (566)
Q Consensus       116 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~l~~L~~L~l~~~~i~~~~~-~~l~~l~~L~~L~l~~~~~~~  192 (566)
                      |.+.+..|..+.++++|++|++++|.+.+..+..  +..+++|++|++++|.+.+..+ ..++++++|+.|++++|.+.+
T Consensus        83 N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~  162 (844)
T 3j0a_A           83 SKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFL  162 (844)
T ss_dssp             CCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCC
T ss_pred             CcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCe
Confidence            9999888999999999999999999998766655  8999999999999999986554 579999999999999999887


Q ss_pred             cCC-cccCc--ccCceEecccccccccCCCCCCCCCC------CCcEEEcccccccccCccccccc---CCCCeeecccc
Q 046712          193 MIP-PIYNI--SSLQYIFIHTNRFHGSVPLDNGVNLP------NLRYFSISGNNLTGSLQDSLSNA---TNLQGLEINRN  260 (566)
Q Consensus       193 ~~~-~l~~~--~~L~~L~l~~~~~~~~~~~~~~~~~~------~L~~L~l~~~~~~~~~~~~l~~~---~~L~~L~l~~~  260 (566)
                      ..+ .+..+  ++|+.|++++|.+.+..+.... .++      .|+.|++++|.+....+..+...   ..++.+.+..+
T Consensus       163 ~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~-~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~  241 (844)
T 3j0a_A          163 VCEHELEPLQGKTLSFFSLAANSLYSRVSVDWG-KCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHH  241 (844)
T ss_dssp             CCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCC-SSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSS
T ss_pred             eCHHHcccccCCccceEECCCCccccccccchh-hcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccc
Confidence            665 55555  8999999999998876665543 333      39999999998776555544432   46777776633


Q ss_pred             c---------ccccccccccCC--CCCcEEECCCCccCCcCCCChhhhhhccCCCCCCEEEccCCeeeeecchhHhhhcc
Q 046712          261 L---------FSGKVSINFSRL--QNLSRLNLGENNLGTGTTNDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLST  329 (566)
Q Consensus       261 ~---------~~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~  329 (566)
                      .         +.......|.++  ++|+.|++++|.+....+      ..+..+++|+.|++++|.+.+..+..+... +
T Consensus       242 ~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~------~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l-~  314 (844)
T 3j0a_A          242 IMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNS------RVFETLKDLKVLNLAYNKINKIADEAFYGL-D  314 (844)
T ss_dssp             CCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECS------CCSSSCCCCCEEEEESCCCCEECTTTTTTC-S
T ss_pred             cccccccccccCCCChhhhhccccCCccEEECCCCcccccCh------hhhhcCCCCCEEECCCCcCCCCChHHhcCC-C
Confidence            2         222223334443  789999999999887655      457789999999999999998877776654 8


Q ss_pred             CCcEEEccCCCCCCCcchhhhccCCCCeecccCCcccccccccccCCCCCCEEEccCCcccccCCccccCCCCCCeEecc
Q 046712          330 TMTEIAIGSNQISDTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSIQILFLNENFLRGTIPSSLGNLTLLTQLILE  409 (566)
Q Consensus       330 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~  409 (566)
                      +|++|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+++ +    ..+++|+.|+++
T Consensus       315 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~-i----~~~~~L~~L~l~  389 (844)
T 3j0a_A          315 NLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTT-I----HFIPSIPDIFLS  389 (844)
T ss_dssp             SCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCC-C----SSCCSCSEEEEE
T ss_pred             CCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCc-c----cCCCCcchhccC
Confidence            99999999999998888899999999999999999998888889999999999999999873 2    238899999999


Q ss_pred             CccccccCCCCCcCCCCCcEEEccCCcceeccchhhhhhcccceEEEccCCcccccCCc-CccCCCCCCEEeCcccccc-
Q 046712          410 VNNLQGKIPPSNGNCQNLILLTTRKNKLSGIVPRQLLRIITLSVLLDLSDNLLSGHFPT-KVGNLKNLVSLDISSNMFS-  487 (566)
Q Consensus       410 ~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~-~~~~~~~L~~L~ls~~~l~-  487 (566)
                      +|++. .+|..   ..+++.|++++|++.+.....+....+.++.|++++|.+.+..+. .+..+++|+.|++++|.+. 
T Consensus       390 ~N~l~-~l~~~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~  465 (844)
T 3j0a_A          390 GNKLV-TLPKI---NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQL  465 (844)
T ss_dssp             SCCCC-CCCCC---CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSS
T ss_pred             CCCcc-ccccc---ccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCcccc
Confidence            99988 44433   578999999999998654433333344559999999999865433 4567899999999999986 


Q ss_pred             ----ccCCccccCCCCCcEEeCCCCcccccCCcCCcCCCCCCEEeCCCCccccccCccccccccCceeecccCcCcccCC
Q 046712          488 ----GEIPTTLGGCTSLEYLGMQDNSFTISIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLLFLNMSYNHFEGKVP  563 (566)
Q Consensus       488 ----~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p  563 (566)
                          +..+..|.++++|++|+|++|.+++..+..|..+++|+.|+|++|+++...+..+.  ++|+.|++++|++++..|
T Consensus       466 ~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~  543 (844)
T 3j0a_A          466 AWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNP  543 (844)
T ss_dssp             SCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCS
T ss_pred             ccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCCh
Confidence                23345688899999999999999988888999999999999999999977776666  899999999999999988


Q ss_pred             C
Q 046712          564 I  564 (566)
Q Consensus       564 ~  564 (566)
                      .
T Consensus       544 ~  544 (844)
T 3j0a_A          544 D  544 (844)
T ss_dssp             C
T ss_pred             h
Confidence            5

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=2.1e-47  Score=397.92  Aligned_cols=491  Identities=17%  Similarity=0.182  Sum_probs=317.1

Q ss_pred             CcccccccCCCCCcEEEEEcCCCccccccCccCcCCCCCCEEecCCCcccccCCcccCCCCCCCEEeCCCCcCCCcCccc
Q 046712           22 CQWTGVTCGHRRQRVTGLDLRHQSVGGVLSPFVGNLNFLRSINLPNNSFRGKIPHEVGNLFRLQNLTLTNNYFLGKILTD  101 (566)
Q Consensus        22 ~~~~~~~~~~~~~~~~~l~l~~~~i~~~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~  101 (566)
                      |.|.++ |          +.+++.++..+ ..+.  ++|++|++++|.+++..|.+|.++++|++|++++|.+++..+..
T Consensus         4 C~~~~~-c----------~~~~~~l~~ip-~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~   69 (549)
T 2z81_A            4 CDASGV-C----------DGRSRSFTSIP-SGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDA   69 (549)
T ss_dssp             ECTTSE-E----------ECTTSCCSSCC-SCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTT
T ss_pred             CCCCce-E----------ECCCCcccccc-ccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhh
Confidence            667665 4          33455555332 2222  56777777777666556666677777777777777666666666


Q ss_pred             cccCCCCcEEEcCCCcCCCCcchhccCCCCCCEEecccccCCC-CCCccccCCCCCCEEEccCCcCcccC-CcccccCCc
Q 046712          102 LSHCSNLMKFEASNNKLEGEIPVKISNLLMLQILNIAENHLKG-QLPASIGNLSALQEIDVRGNRLGGRI-PSTISHVRN  179 (566)
Q Consensus       102 ~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~i~~~~-~~~l~~l~~  179 (566)
                      |.++++|++|++++|.+++..+..++++++|++|++++|.+.+ ..+..++.+++|++|++++|...+.+ +..+..+++
T Consensus        70 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~  149 (549)
T 2z81_A           70 FYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTS  149 (549)
T ss_dssp             TTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCE
T ss_pred             ccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccc
Confidence            6667777777777777665555556667777777777776653 23456666777777777766632233 345666677


Q ss_pred             ccEeecccccceecCC-cccCcccCceEecccccccccCCCCCCCCCCCCcEEEcccccccccC---cccccccCCCCee
Q 046712          180 LISFNVAYNQFSGMIP-PIYNISSLQYIFIHTNRFHGSVPLDNGVNLPNLRYFSISGNNLTGSL---QDSLSNATNLQGL  255 (566)
Q Consensus       180 L~~L~l~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~---~~~l~~~~~L~~L  255 (566)
                      |+.|++++|.+.+..+ .+..+++|++|+++.+... .++......+++|++|++++|.+.+..   ......+++|+.+
T Consensus       150 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L  228 (549)
T 2z81_A          150 LNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKL  228 (549)
T ss_dssp             EEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBST-THHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEE
T ss_pred             cCeeeccCCcccccChhhhhccccCceEecccCccc-ccchhhHhhcccccEEEccCCccccccccccchhhhhhcccce
Confidence            7777777776665444 5566666777776666543 223222224667777777777665431   1122345677777


Q ss_pred             eccccccccccc----ccccCCCCCcEEECCCCccCCcCCCChhhhhhccCCCCCCEEEccCCeeeeecc----hhHhhh
Q 046712          256 EINRNLFSGKVS----INFSRLQNLSRLNLGENNLGTGTTNDLDFITLLTNCTKLEVLDLHSNRFGGVLP----FSLANL  327 (566)
Q Consensus       256 ~l~~~~~~~~~~----~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~----~~~~~~  327 (566)
                      ++.++.+.+...    ..+..+++|+.+++++|.+.............+..+++|+.+++.++.+.....    ..+...
T Consensus       229 ~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~  308 (549)
T 2z81_A          229 AFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSL  308 (549)
T ss_dssp             EEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHH
T ss_pred             eccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhh
Confidence            777776654322    223456677777777776554322111111335667888888888876543210    112233


Q ss_pred             ccCCcEEEccCCCCCCCcchhh-hccCCCCeecccCCccccccc---ccccCCCCCCEEEccCCcccccCC--ccccCCC
Q 046712          328 STTMTEIAIGSNQISDTIPDVI-ANLVNLNALGVESNQLAGTIP---LAIGELKSIQILFLNENFLRGTIP--SSLGNLT  401 (566)
Q Consensus       328 ~~~L~~L~l~~~~~~~~~~~~~-~~l~~L~~L~l~~~~~~~~~~---~~~~~~~~L~~L~l~~n~~~~~~~--~~~~~~~  401 (566)
                      .+.+++|++++|.+. .+|..+ ..+++|++|++++|.+.+..+   ..++.+++|++|++++|.+++..+  ..+..++
T Consensus       309 ~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~  387 (549)
T 2z81_A          309 LEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLK  387 (549)
T ss_dssp             STTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCT
T ss_pred             cccceEEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCC
Confidence            478999999999887 455544 678999999999999886553   346788999999999999874322  4578889


Q ss_pred             CCCeEeccCccccccCCCCCcCCCCCcEEEccCCcceeccchhhhhhcccceEEEccCCcccccCCcCccCCCCCCEEeC
Q 046712          402 LLTQLILEVNNLQGKIPPSNGNCQNLILLTTRKNKLSGIVPRQLLRIITLSVLLDLSDNLLSGHFPTKVGNLKNLVSLDI  481 (566)
Q Consensus       402 ~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l  481 (566)
                      +|++|++++|++. .+|..+..+++|++|++++|.+.+. +..+   ++.++.|++++|.+.+.    ...+++|++|++
T Consensus       388 ~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~~l-~~~~---~~~L~~L~Ls~N~l~~~----~~~l~~L~~L~L  458 (549)
T 2z81_A          388 NLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRVV-KTCI---PQTLEVLDVSNNNLDSF----SLFLPRLQELYI  458 (549)
T ss_dssp             TCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCSCC-CTTS---CTTCSEEECCSSCCSCC----CCCCTTCCEEEC
T ss_pred             CCCEEECCCCCCc-cCChhhcccccccEEECCCCCcccc-cchh---cCCceEEECCCCChhhh----cccCChhcEEEC
Confidence            9999999999988 6777888889999999999987632 2221   23446777777776643    245667777777


Q ss_pred             ccccccccCCccccCCCCCcEEeCCCCcccccCCcCCcCCCCCCEEeCCCCccccccC
Q 046712          482 SSNMFSGEIPTTLGGCTSLEYLGMQDNSFTISIPSTLSSLKSITELDLSRNNLSGHIP  539 (566)
Q Consensus       482 s~~~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~  539 (566)
                      ++|++. .+|. ...+++|++|+|++|.+++..++.+..+++|+.|++++|++.+..|
T Consensus       459 s~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  514 (549)
T 2z81_A          459 SRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  514 (549)
T ss_dssp             CSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred             CCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence            777776 4554 3456777777777777776666667777777777777777665444

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=2.6e-47  Score=406.71  Aligned_cols=475  Identities=16%  Similarity=0.224  Sum_probs=250.1

Q ss_pred             CcccCCCCCCCCCCCcCCC-----CC--Ccc------------cccccCCCCCcEEEEEcCCCccccccCccCcCCCCCC
Q 046712            1 MKSQLQDPLGVTSSWNNSI-----NL--CQW------------TGVTCGHRRQRVTGLDLRHQSVGGVLSPFVGNLNFLR   61 (566)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~-----~~--~~~------------~~~~~~~~~~~~~~l~l~~~~i~~~~~~~~~~l~~L~   61 (566)
                      |++++.||     +|+.+.     .+  |.|            .||.|... .+|..|+|+++++.+.+|+.|+++++|+
T Consensus       277 ~k~~l~~~-----~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~~-~~V~~L~Ls~~~L~G~ip~~l~~L~~L~  350 (876)
T 4ecn_A          277 IWEALDGK-----NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNN-GRVTGLSLAGFGAKGRVPDAIGQLTELK  350 (876)
T ss_dssp             HHHHTTGG-----GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECTT-SCEEEEECTTTCCEEEECGGGGGCTTCC
T ss_pred             HHHHcCCC-----CCCcCCCcccccCCccccccccccccccCcCceEecCC-CCEEEEECccCCCCCcCchHHhccccce
Confidence            46677777     787664     44  999            99999863 8999999999999999999999999999


Q ss_pred             EEec-CCCcccccCCcccC---------------------------------------------------CCCCCCEEeC
Q 046712           62 SINL-PNNSFRGKIPHEVG---------------------------------------------------NLFRLQNLTL   89 (566)
Q Consensus        62 ~L~l-s~~~l~~~~~~~~~---------------------------------------------------~l~~L~~L~l   89 (566)
                      +|++ ++|.+.+..|....                                                   ....++.+.+
T Consensus       351 ~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~~~~i~~~~~l~l~~l~l  430 (876)
T 4ecn_A          351 VLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQI  430 (876)
T ss_dssp             EEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTTSCCCCCCCCCCCCTTTT
T ss_pred             EeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCccccccccccccchhhcee
Confidence            9999 88877655332111                                                   1111222222


Q ss_pred             CC--CcCCCcCccccccCCCCcEEEcCCCcCCCC-----------------cchhcc--CCCCCCEEecccccCCCCCCc
Q 046712           90 TN--NYFLGKILTDLSHCSNLMKFEASNNKLEGE-----------------IPVKIS--NLLMLQILNIAENHLKGQLPA  148 (566)
Q Consensus        90 ~~--~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~-----------------~~~~l~--~l~~L~~L~l~~~~~~~~~~~  148 (566)
                      ..  |.+++ .|..|.++++|++|++++|.+++.                 +|..++  ++++|++|++++|.+.+.+|.
T Consensus       431 ~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~  509 (876)
T 4ecn_A          431 GNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPD  509 (876)
T ss_dssp             TCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCG
T ss_pred             ccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChH
Confidence            22  33433 444455555555555555555531                 444444  555555555555555445555


Q ss_pred             cccCCCCCCEEEccCCc-Ccc-cCCcccccCCcccEeecccccceecCCcccCcccCceEecccccccccCCC--CCCCC
Q 046712          149 SIGNLSALQEIDVRGNR-LGG-RIPSTISHVRNLISFNVAYNQFSGMIPPIYNISSLQYIFIHTNRFHGSVPL--DNGVN  224 (566)
Q Consensus       149 ~~~~l~~L~~L~l~~~~-i~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~--~~~~~  224 (566)
                      .++++++|++|++++|. +++ .+|..+..++                ..+..+++|++|++++|.+. .+|.  .+. .
T Consensus       510 ~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~----------------~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~-~  571 (876)
T 4ecn_A          510 FLYDLPELQSLNIACNRGISAAQLKADWTRLA----------------DDEDTGPKIQIFYMGYNNLE-EFPASASLQ-K  571 (876)
T ss_dssp             GGGGCSSCCEEECTTCTTSCHHHHHHHHHHHH----------------HCTTTTTTCCEEECCSSCCC-BCCCHHHHT-T
T ss_pred             HHhCCCCCCEEECcCCCCcccccchHHHHhhh----------------hcccccCCccEEEeeCCcCC-ccCChhhhh-c
Confidence            55555555555555554 443 3444443333                00112224555555555444 4443  222 4


Q ss_pred             CCCCcEEEcccccccccCcccccccCCCCeeecccccccccccccccCCCC-CcEEECCCCccCCcCCCChhhhhhccCC
Q 046712          225 LPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINRNLFSGKVSINFSRLQN-LSRLNLGENNLGTGTTNDLDFITLLTNC  303 (566)
Q Consensus       225 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~~~~~~~~~l~~~  303 (566)
                      +++|+.|++++|.+. .++ .+..+++|+.|++++|.+. ..+..+..+++ |+.|++++|.+...+.       .+..+
T Consensus       572 L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~~lp~-------~~~~~  641 (876)
T 4ecn_A          572 MVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKYIPN-------IFNAK  641 (876)
T ss_dssp             CTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCCSCCS-------CCCTT
T ss_pred             CCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCCcCch-------hhhcc
Confidence            555555555555554 333 4555555555555555554 33334445555 5555555555543221       11122


Q ss_pred             --CCCCEEEccCCeeeeecchhH---hh-hccCCcEEEccCCCCCCCcchhhhccCCCCeecccCCccccccccccc---
Q 046712          304 --TKLEVLDLHSNRFGGVLPFSL---AN-LSTTMTEIAIGSNQISDTIPDVIANLVNLNALGVESNQLAGTIPLAIG---  374 (566)
Q Consensus       304 --~~L~~L~l~~~~~~~~~~~~~---~~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~---  374 (566)
                        ++|+.|++++|.+.+..|...   .. ..++|+.|++++|.+....+..+..+++|+.|++++|.+.......+.   
T Consensus       642 ~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~  721 (876)
T 4ecn_A          642 SVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKD  721 (876)
T ss_dssp             CSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTT
T ss_pred             ccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhcccc
Confidence              235555555555543322110   00 012455555555555422222233556666666666655522222221   


Q ss_pred             ----CCCCCCEEEccCCcccccCCcccc--CCCCCCeEeccCccccccCCCCCcCCCCCcEEEccCCcceeccchhhhhh
Q 046712          375 ----ELKSIQILFLNENFLRGTIPSSLG--NLTLLTQLILEVNNLQGKIPPSNGNCQNLILLTTRKNKLSGIVPRQLLRI  448 (566)
Q Consensus       375 ----~~~~L~~L~l~~n~~~~~~~~~~~--~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~  448 (566)
                          ++++|++|++++|.++ .+|..+.  .+++|+.|++++|.+.+ +|..+..+++|+.|++++|+            
T Consensus       722 ~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~------------  787 (876)
T 4ecn_A          722 GNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQR------------  787 (876)
T ss_dssp             SCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCB------------
T ss_pred             ccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCC------------
Confidence                1225666666666655 4455444  55566666666665553 44445555555555554443            


Q ss_pred             cccceEEEccCCcccccCCcCccCCCCCCEEeCccccccccCCccccCCCCCcEEeCCCCcccccCCcCCcCCCCCCEEe
Q 046712          449 ITLSVLLDLSDNLLSGHFPTKVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTISIPSTLSSLKSITELD  528 (566)
Q Consensus       449 ~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~  528 (566)
                                                     ++++|++.+.+|..|..+++|++|+|++|.+. .+|..+.  ++|+.|+
T Consensus       788 -------------------------------~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L~-~Ip~~l~--~~L~~Ld  833 (876)
T 4ecn_A          788 -------------------------------DAEGNRILRQWPTGITTCPSLIQLQIGSNDIR-KVDEKLT--PQLYILD  833 (876)
T ss_dssp             -------------------------------CTTCCBCCCCCCTTGGGCSSCCEEECCSSCCC-BCCSCCC--SSSCEEE
T ss_pred             -------------------------------CcccccccccChHHHhcCCCCCEEECCCCCCC-ccCHhhc--CCCCEEE
Confidence                                           23345555555556666666666666666663 4555544  4666666


Q ss_pred             CCCCccccccCccccccccCceeecccCcC
Q 046712          529 LSRNNLSGHIPQYLENLSFLLFLNMSYNHF  558 (566)
Q Consensus       529 l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~  558 (566)
                      |++|++....+..+.....+..+.+.+|+.
T Consensus       834 Ls~N~l~~i~~~~~~~~~~~~~~~L~~n~~  863 (876)
T 4ecn_A          834 IADNPNISIDVTSVCPYIEAGMYVLLYDKT  863 (876)
T ss_dssp             CCSCTTCEEECGGGHHHHHTTCCEEECCTT
T ss_pred             CCCCCCCccChHHccccccchheeecCCCc
Confidence            666666655555444444444444444433

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=1.5e-45  Score=391.47  Aligned_cols=539  Identities=22%  Similarity=0.215  Sum_probs=406.2

Q ss_pred             CCCCCCCCCCCcCCCC----CCccc----ccccCCCC---------CcEEEEEcCCCccccccCccCcCCCCCCEEecCC
Q 046712            5 LQDPLGVTSSWNNSIN----LCQWT----GVTCGHRR---------QRVTGLDLRHQSVGGVLSPFVGNLNFLRSINLPN   67 (566)
Q Consensus         5 ~~~~~~~~~~~~~~~~----~~~~~----~~~~~~~~---------~~~~~l~l~~~~i~~~~~~~~~~l~~L~~L~ls~   67 (566)
                      |.|+...++.|.....    .|.+.    .++|..+.         ..+++|+|++|.|+...+.+|.++++|++|++++
T Consensus         6 ~~~~~~~~~~~~~~~p~~~~~c~~~~~~~~~~c~~~~l~~vP~~lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~   85 (635)
T 4g8a_A            6 YKDDDDKLAAANSSIPESWEPCVEVVPNITYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSR   85 (635)
T ss_dssp             -------------------CCSEEEETTTEEECTTSCCSSCCSSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTT
T ss_pred             cCCCcchhhcccCCCCCCCCCccccCCCCEEECCCCCcCccCCCCCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCC
Confidence            4577888888887753    35443    36687543         5799999999999998889999999999999999


Q ss_pred             CcccccCCcccCCCCCCCEEeCCCCcCCCcCccccccCCCCcEEEcCCCcCCCCcchhccCCCCCCEEecccccCCC-CC
Q 046712           68 NSFRGKIPHEVGNLFRLQNLTLTNNYFLGKILTDLSHCSNLMKFEASNNKLEGEIPVKISNLLMLQILNIAENHLKG-QL  146 (566)
Q Consensus        68 ~~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~~  146 (566)
                      |.+++..+++|.++++|++|++++|+++...+..|.++++|++|++++|++++..+..|+++++|++|++++|.+.+ ..
T Consensus        86 N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~  165 (635)
T 4g8a_A           86 CEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKL  165 (635)
T ss_dssp             CCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCC
T ss_pred             CcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCC
Confidence            99997778899999999999999999998888889999999999999999997767779999999999999999874 46


Q ss_pred             CccccCCCCCCEEEccCCcCcccCCcccccCCcc----cEeecccccceecCCcccCcccCceEecccccccccCCCCCC
Q 046712          147 PASIGNLSALQEIDVRGNRLGGRIPSTISHVRNL----ISFNVAYNQFSGMIPPIYNISSLQYIFIHTNRFHGSVPLDNG  222 (566)
Q Consensus       147 ~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L----~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~  222 (566)
                      |..++.+++|++|++++|.+++..+..+..+.++    ..++++.+.+....+.......++.+.+.++.....+.....
T Consensus       166 ~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~  245 (635)
T 4g8a_A          166 PEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCI  245 (635)
T ss_dssp             CGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHH
T ss_pred             chhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhh
Confidence            7888999999999999999987777877766554    367788888887777666666677787777654332222222


Q ss_pred             CCCCCCcEEEccccc------ccccCcccccccCCCCeeeccccccc---ccccccccCCCCCcEEECCCCccCCcCCCC
Q 046712          223 VNLPNLRYFSISGNN------LTGSLQDSLSNATNLQGLEINRNLFS---GKVSINFSRLQNLSRLNLGENNLGTGTTND  293 (566)
Q Consensus       223 ~~~~~L~~L~l~~~~------~~~~~~~~l~~~~~L~~L~l~~~~~~---~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~  293 (566)
                      ..++.++...+..+.      +.......+.....+....+..+...   ......+....+++.+.+..+.+....   
T Consensus       246 ~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~---  322 (635)
T 4g8a_A          246 QGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVK---  322 (635)
T ss_dssp             HTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECG---
T ss_pred             cCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhccccccccccccccccc---
Confidence            355666655544322      11222233444445555554433222   122333556678888888877665432   


Q ss_pred             hhhhhhccCCCCCCEEEccCCeeeeecchhHhhhccCCcEEEccCCCCCCCcchhhhccCCCCeecccCCcccc--cccc
Q 046712          294 LDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQISDTIPDVIANLVNLNALGVESNQLAG--TIPL  371 (566)
Q Consensus       294 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--~~~~  371 (566)
                           .+.....++.|++.++.+.......    ...++.+.+..+.+....  ....+++|+.+++++|.+..  ..+.
T Consensus       323 -----~~~~~~~L~~L~l~~~~~~~~~~~~----l~~L~~l~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~  391 (635)
T 4g8a_A          323 -----DFSYNFGWQHLELVNCKFGQFPTLK----LKSLKRLTFTSNKGGNAF--SEVDLPSLEFLDLSRNGLSFKGCCSQ  391 (635)
T ss_dssp             -----GGGSCCCCSEEEEESCEESSCCCCB----CTTCCEEEEESCCSCCBC--CCCBCTTCCEEECCSSCCBEEEECCH
T ss_pred             -----ccccchhhhhhhcccccccCcCccc----chhhhhcccccccCCCCc--ccccccccccchhhcccccccccccc
Confidence                 2456678999999999877544322    367888999888776432  34568999999999998753  3445


Q ss_pred             cccCCCCCCEEEccCCcccccCCccccCCCCCCeEeccCccccccCC-CCCcCCCCCcEEEccCCcceeccchhhhhhcc
Q 046712          372 AIGELKSIQILFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIP-PSNGNCQNLILLTTRKNKLSGIVPRQLLRIIT  450 (566)
Q Consensus       372 ~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~  450 (566)
                      .+..+.+|+++++..+... ..+..+..+++|+.+++..+......+ ..+..+++++.++++.|.+....+..+.....
T Consensus       392 ~~~~~~~L~~L~~~~~~~~-~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~  470 (635)
T 4g8a_A          392 SDFGTISLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSS  470 (635)
T ss_dssp             HHHSCSCCCEEECCSCSEE-EECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTT
T ss_pred             chhhhhhhhhhhccccccc-cccccccccccccchhhhhccccccccccccccccccccccccccccccccccccccchh
Confidence            5667889999999999887 455677889999999999887664443 55778999999999999998776666655555


Q ss_pred             cceEEEccCCcc-cccCCcCccCCCCCCEEeCccccccccCCccccCCCCCcEEeCCCCcccccCCcCCcCCCCCCEEeC
Q 046712          451 LSVLLDLSDNLL-SGHFPTKVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTISIPSTLSSLKSITELDL  529 (566)
Q Consensus       451 ~l~~L~l~~~~~-~~~~~~~~~~~~~L~~L~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l  529 (566)
                      + +.+++++|.. .+..+..|..+++|++|++++|++.+..|..|.++++|++|+|++|.++...+..|..+++|++|++
T Consensus       471 L-~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L  549 (635)
T 4g8a_A          471 L-EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDY  549 (635)
T ss_dssp             C-CEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEEC
T ss_pred             h-hhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEEC
Confidence            5 9999999975 4457788999999999999999999888889999999999999999999888888999999999999


Q ss_pred             CCCccccccCcccccc-ccCceeecccCcCc
Q 046712          530 SRNNLSGHIPQYLENL-SFLLFLNMSYNHFE  559 (566)
Q Consensus       530 ~~n~~~~~~~~~l~~l-~~L~~L~l~~n~~~  559 (566)
                      ++|++++..|+.+..+ ++|+.|++++|+++
T Consensus       550 s~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~  580 (635)
T 4g8a_A          550 SLNHIMTSKKQELQHFPSSLAFLNLTQNDFA  580 (635)
T ss_dssp             TTSCCCBCCSSCTTCCCTTCCEEECTTCCBC
T ss_pred             CCCcCCCCCHHHHHhhhCcCCEEEeeCCCCc
Confidence            9999999999999888 68999999999665

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=1.6e-46  Score=394.98  Aligned_cols=443  Identities=18%  Similarity=0.248  Sum_probs=355.8

Q ss_pred             CCCCcCCCCCCcc---cccccCCCCCcEEEEEcCCCccccccCccCcCCCCCCEEecCCCccccc---------------
Q 046712           12 TSSWNNSINLCQW---TGVTCGHRRQRVTGLDLRHQSVGGVLSPFVGNLNFLRSINLPNNSFRGK---------------   73 (566)
Q Consensus        12 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~l~~~~i~~~~~~~~~~l~~L~~L~ls~~~l~~~---------------   73 (566)
                      .++|+.+.+||.|   .||.|... .+|+.|+|+++++.+.+|.+|+++++|++|++++|.+...               
T Consensus        57 ~~~W~~~~~~c~w~~~~GV~C~~~-~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~  135 (636)
T 4eco_A           57 GANWNFNKELDMWGAQPGVSLNSN-GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSD  135 (636)
T ss_dssp             -CCCCCSSCGGGTTCCTTEEECTT-CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCH
T ss_pred             CCCCCCCCCcccccCCCCeEEcCC-CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchH
Confidence            4589999999999   99999876 8999999999999999999999999999999999965200               


Q ss_pred             ------------------CCccc-------------------CCCCCCCEEeCC--CCcCCCcCccccccCCCCcEEEcC
Q 046712           74 ------------------IPHEV-------------------GNLFRLQNLTLT--NNYFLGKILTDLSHCSNLMKFEAS  114 (566)
Q Consensus        74 ------------------~~~~~-------------------~~l~~L~~L~l~--~~~l~~~~~~~~~~l~~L~~L~l~  114 (566)
                                        .|..+                   .....++.+.+.  +|.+++ .|..++++++|++|+++
T Consensus       136 ~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls  214 (636)
T 4eco_A          136 EQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMG  214 (636)
T ss_dssp             HHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEE
T ss_pred             HHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECc
Confidence                              00000                   111123333333  456776 77789999999999999


Q ss_pred             CCcCCCC-----------------cchhcc--CCCCCCEEecccccCCCCCCccccCCCCCCEEEccCCc-Ccc-cCCcc
Q 046712          115 NNKLEGE-----------------IPVKIS--NLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNR-LGG-RIPST  173 (566)
Q Consensus       115 ~~~~~~~-----------------~~~~l~--~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-i~~-~~~~~  173 (566)
                      +|.+++.                 +|..++  ++++|++|++++|.+.+.+|..++++++|++|++++|. +++ .+|..
T Consensus       215 ~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~  294 (636)
T 4eco_A          215 NSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDD  294 (636)
T ss_dssp             SCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHH
T ss_pred             CCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHH
Confidence            9999864                 888888  99999999999999988999999999999999999998 887 78888


Q ss_pred             cccC------CcccEeecccccceecCC--cccCcccCceEecccccccccCCCCCCCCCCCCcEEEcccccccccCccc
Q 046712          174 ISHV------RNLISFNVAYNQFSGMIP--PIYNISSLQYIFIHTNRFHGSVPLDNGVNLPNLRYFSISGNNLTGSLQDS  245 (566)
Q Consensus       174 l~~l------~~L~~L~l~~~~~~~~~~--~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~  245 (566)
                      +..+      ++|+.|++++|.+...+.  .+..+++|++|++++|.+.+.+| .+ ..+++|++|++++|.+. ..+..
T Consensus       295 ~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~-~~l~~L~~L~L~~N~l~-~lp~~  371 (636)
T 4eco_A          295 WQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AF-GSEIKLASLNLAYNQIT-EIPAN  371 (636)
T ss_dssp             HHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CC-EEEEEESEEECCSSEEE-ECCTT
T ss_pred             HHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-hh-CCCCCCCEEECCCCccc-cccHh
Confidence            8776      899999999999986666  68899999999999999988888 33 37889999999999988 66777


Q ss_pred             ccccCC-CCeeecccccccccccccccCC--CCCcEEECCCCccCCcCCCChh-hhhhccCCCCCCEEEccCCeeeeecc
Q 046712          246 LSNATN-LQGLEINRNLFSGKVSINFSRL--QNLSRLNLGENNLGTGTTNDLD-FITLLTNCTKLEVLDLHSNRFGGVLP  321 (566)
Q Consensus       246 l~~~~~-L~~L~l~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~~~-~~~~l~~~~~L~~L~l~~~~~~~~~~  321 (566)
                      +..+++ |+.|++++|.+. ..+..+...  ++|+.|++++|.+....+..+. .......+++|+.|++++|.+. ..|
T Consensus       372 l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp  449 (636)
T 4eco_A          372 FCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS-KFP  449 (636)
T ss_dssp             SEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCC-SCC
T ss_pred             hhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccC-cCC
Confidence            888998 999999999988 455556554  4899999999998776552211 0011116679999999999998 555


Q ss_pred             hhHhhhccCCcEEEccCCCCCCCcchhhhcc-------CCCCeecccCCccccccccccc--CCCCCCEEEccCCccccc
Q 046712          322 FSLANLSTTMTEIAIGSNQISDTIPDVIANL-------VNLNALGVESNQLAGTIPLAIG--ELKSIQILFLNENFLRGT  392 (566)
Q Consensus       322 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l-------~~L~~L~l~~~~~~~~~~~~~~--~~~~L~~L~l~~n~~~~~  392 (566)
                      ..+....+.|++|++++|.++...+..+...       ++|++|++++|.++ .+|..+.  .+++|++|++++|.+++ 
T Consensus       450 ~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-  527 (636)
T 4eco_A          450 KELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-  527 (636)
T ss_dssp             THHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-
T ss_pred             HHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-
Confidence            5555555899999999999984333333322       38999999999998 5666676  89999999999999996 


Q ss_pred             CCccccCCCCCCeEec------cCccccccCCCCCcCCCCCcEEEccCCcceeccchhhhhhcccceEEEccCCcccccC
Q 046712          393 IPSSLGNLTLLTQLIL------EVNNLQGKIPPSNGNCQNLILLTTRKNKLSGIVPRQLLRIITLSVLLDLSDNLLSGHF  466 (566)
Q Consensus       393 ~~~~~~~~~~L~~L~l------~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~  466 (566)
                      +|..+..+++|+.|++      ++|++.+.+|..+..+++|++|++++|++ +.+|..+.   +.++.|++++|++....
T Consensus       528 ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~---~~L~~L~Ls~N~l~~~~  603 (636)
T 4eco_A          528 FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT---PNISVLDIKDNPNISID  603 (636)
T ss_dssp             CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC---TTCCEEECCSCTTCEEE
T ss_pred             cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh---CcCCEEECcCCCCcccc
Confidence            7888889999999999      45777888999999999999999999999 46676654   45699999999887544


Q ss_pred             C
Q 046712          467 P  467 (566)
Q Consensus       467 ~  467 (566)
                      .
T Consensus       604 ~  604 (636)
T 4eco_A          604 L  604 (636)
T ss_dssp             C
T ss_pred             H
Confidence            3

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=5.8e-45  Score=379.49  Aligned_cols=469  Identities=16%  Similarity=0.181  Sum_probs=384.3

Q ss_pred             CcEEEEEcCCCccccccCccCcCCCCCCEEecCCCcccccCCcccCCCCCCCEEeCCCCcCCCcCccccccCCCCcEEEc
Q 046712           34 QRVTGLDLRHQSVGGVLSPFVGNLNFLRSINLPNNSFRGKIPHEVGNLFRLQNLTLTNNYFLGKILTDLSHCSNLMKFEA  113 (566)
Q Consensus        34 ~~~~~l~l~~~~i~~~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l  113 (566)
                      +.+++|++++|.+++..+..|.++++|++|++++|.+++..|.+|.++++|++|++++|.+++..+..|+++++|++|++
T Consensus        26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  105 (549)
T 2z81_A           26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNL  105 (549)
T ss_dssp             TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEEC
T ss_pred             CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEEC
Confidence            68999999999999998999999999999999999999888899999999999999999999888888999999999999


Q ss_pred             CCCcCCC-CcchhccCCCCCCEEecccccCCCCCC-ccccCCCCCCEEEccCCcCcccCCcccccCCcccEeecccccce
Q 046712          114 SNNKLEG-EIPVKISNLLMLQILNIAENHLKGQLP-ASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVAYNQFS  191 (566)
Q Consensus       114 ~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~  191 (566)
                      ++|.+++ ..+..+.++++|++|++++|...+.++ ..+..+++|++|++++|.+.+..|.++..+++|+.|+++++...
T Consensus       106 s~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~  185 (549)
T 2z81_A          106 MGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA  185 (549)
T ss_dssp             TTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBST
T ss_pred             CCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCccc
Confidence            9999985 346688999999999999998544554 67999999999999999999889999999999999999999875


Q ss_pred             ecCCc-ccCcccCceEecccccccccC--CCCCCCCCCCCcEEEcccccccccCc----ccccccCCCCeeecccccccc
Q 046712          192 GMIPP-IYNISSLQYIFIHTNRFHGSV--PLDNGVNLPNLRYFSISGNNLTGSLQ----DSLSNATNLQGLEINRNLFSG  264 (566)
Q Consensus       192 ~~~~~-l~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~----~~l~~~~~L~~L~l~~~~~~~  264 (566)
                      ..... +..+++|++|++++|.+.+..  +......+++|+.|+++++.+.+..+    ..+..+++|+.+++++|.+.+
T Consensus       186 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~  265 (549)
T 2z81_A          186 FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNG  265 (549)
T ss_dssp             THHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEEC
T ss_pred             ccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccc
Confidence            44442 346899999999999987532  33334467899999999998775332    345667899999999998765


Q ss_pred             ccc------ccccCCCCCcEEECCCCccCCcCCCChhhhhhccCCCCCCEEEccCCeeeeecchhHhhhccCCcEEEccC
Q 046712          265 KVS------INFSRLQNLSRLNLGENNLGTGTTNDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSTTMTEIAIGS  338 (566)
Q Consensus       265 ~~~------~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~  338 (566)
                      ...      ..+..+++++.+++.++.+...... ..........++|+.|++++|.+. ..|..+....+.|++|++++
T Consensus       266 ~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~-~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~  343 (549)
T 2z81_A          266 LGDFNPSESDVVSELGKVETVTIRRLHIPQFYLF-YDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSE  343 (549)
T ss_dssp             CSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGS-CCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCS
T ss_pred             cccccccchhhhhhhcccccccccccccchhhhc-ccchhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccC
Confidence            321      2346778999999988876543210 000112334578999999999987 66766655569999999999


Q ss_pred             CCCCCCcch---hhhccCCCCeecccCCccccccc--ccccCCCCCCEEEccCCcccccCCccccCCCCCCeEeccCccc
Q 046712          339 NQISDTIPD---VIANLVNLNALGVESNQLAGTIP--LAIGELKSIQILFLNENFLRGTIPSSLGNLTLLTQLILEVNNL  413 (566)
Q Consensus       339 ~~~~~~~~~---~~~~l~~L~~L~l~~~~~~~~~~--~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l  413 (566)
                      |.+.+..+.   .+..+++|++|++++|.+++..+  ..+..+++|++|++++|.++ .+|..+..+++|++|++++|.+
T Consensus       344 N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l  422 (549)
T 2z81_A          344 NLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGI  422 (549)
T ss_dssp             SCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCC
T ss_pred             CccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCc
Confidence            999876543   36788999999999999986532  45889999999999999998 6788888999999999999998


Q ss_pred             cccCCCCCcCCCCCcEEEccCCcceeccchhhhhhcccceEEEccCCcccccCCcCccCCCCCCEEeCccccccccCCcc
Q 046712          414 QGKIPPSNGNCQNLILLTTRKNKLSGIVPRQLLRIITLSVLLDLSDNLLSGHFPTKVGNLKNLVSLDISSNMFSGEIPTT  493 (566)
Q Consensus       414 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~l~~~~~~~  493 (566)
                      . .++..+  .++|++|++++|++.+..    ..+ +.++.|++++|++. ..+. ...+++|+.|++++|++++..+..
T Consensus       423 ~-~l~~~~--~~~L~~L~Ls~N~l~~~~----~~l-~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~  492 (549)
T 2z81_A          423 R-VVKTCI--PQTLEVLDVSNNNLDSFS----LFL-PRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGI  492 (549)
T ss_dssp             S-CCCTTS--CTTCSEEECCSSCCSCCC----CCC-TTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTG
T ss_pred             c-cccchh--cCCceEEECCCCChhhhc----ccC-ChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHH
Confidence            7 344333  369999999999998643    233 34599999999998 4443 467899999999999999877888


Q ss_pred             ccCCCCCcEEeCCCCcccccCC
Q 046712          494 LGGCTSLEYLGMQDNSFTISIP  515 (566)
Q Consensus       494 ~~~~~~L~~L~L~~n~~~~~~~  515 (566)
                      +..+++|++|++++|++.+..+
T Consensus       493 ~~~l~~L~~L~l~~N~~~~~~~  514 (549)
T 2z81_A          493 FDRLTSLQKIWLHTNPWDCSCP  514 (549)
T ss_dssp             GGGCTTCCEEECCSSCBCCCHH
T ss_pred             HhcCcccCEEEecCCCccCCCc
Confidence            9999999999999999876543

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=4.8e-44  Score=374.56  Aligned_cols=466  Identities=17%  Similarity=0.164  Sum_probs=377.8

Q ss_pred             CcEEEEEcCCCccccccCccCcCCCCCCEEecCCCcccccCCcccCCCCCCCEEeCCCCcCCCcCccccccCCCCcEEEc
Q 046712           34 QRVTGLDLRHQSVGGVLSPFVGNLNFLRSINLPNNSFRGKIPHEVGNLFRLQNLTLTNNYFLGKILTDLSHCSNLMKFEA  113 (566)
Q Consensus        34 ~~~~~l~l~~~~i~~~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l  113 (566)
                      +++++|++++|.+++..+.+|+++++|++|++++|.+++..|.+|.++++|++|++++|.++......++++++|++|++
T Consensus        52 ~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L  131 (570)
T 2z63_A           52 PELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNV  131 (570)
T ss_dssp             SSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEEC
T ss_pred             CCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCccccccccccEEec
Confidence            88999999999999988899999999999999999999778889999999999999999998777777999999999999


Q ss_pred             CCCcCCC-CcchhccCCCCCCEEecccccCCCCCCccccCCCCC----CEEEccCCcCcccCCcccccCCcccEeecccc
Q 046712          114 SNNKLEG-EIPVKISNLLMLQILNIAENHLKGQLPASIGNLSAL----QEIDVRGNRLGGRIPSTISHVRNLISFNVAYN  188 (566)
Q Consensus       114 ~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L----~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~  188 (566)
                      ++|.+.+ .+|..+.++++|++|++++|.+.+..+..++.+++|    +++++++|.+.+..+..+... +|+.|++++|
T Consensus       132 ~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n  210 (570)
T 2z63_A          132 AHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNN  210 (570)
T ss_dssp             CSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESC
T ss_pred             CCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCceecCHHHhccC-cceeEecccc
Confidence            9999986 368899999999999999999987777888888888    899999999997777777665 8999999887


Q ss_pred             ccee--cCCcccCcccCceEecccccccc-----cCCCCCCCCCC--CCcEEEcccc-cccccCcccccccCCCCeeecc
Q 046712          189 QFSG--MIPPIYNISSLQYIFIHTNRFHG-----SVPLDNGVNLP--NLRYFSISGN-NLTGSLQDSLSNATNLQGLEIN  258 (566)
Q Consensus       189 ~~~~--~~~~l~~~~~L~~L~l~~~~~~~-----~~~~~~~~~~~--~L~~L~l~~~-~~~~~~~~~l~~~~~L~~L~l~  258 (566)
                      ....  ....+..++.++...+....+..     .++...+..++  .++.+++.++ .+.+..+..+..+++|+.++++
T Consensus       211 ~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~  290 (570)
T 2z63_A          211 FDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLV  290 (570)
T ss_dssp             CSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEE
T ss_pred             cccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEec
Confidence            4321  11133455555555443322211     11222111222  3456666666 5566677788899999999999


Q ss_pred             cccccccccccccCCCCCcEEECCCCccCCcCCCChhhhhhccCCCCCCEEEccCCeeeeecchhHhhhccCCcEEEccC
Q 046712          259 RNLFSGKVSINFSRLQNLSRLNLGENNLGTGTTNDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSTTMTEIAIGS  338 (566)
Q Consensus       259 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~  338 (566)
                      ++.+.. .+..+..+ +|++|++++|.+...+.         ..+++|+.|++++|.+....+.   ...+.|++|++++
T Consensus       291 ~~~l~~-l~~~~~~~-~L~~L~l~~n~~~~l~~---------~~l~~L~~L~l~~n~~~~~~~~---~~~~~L~~L~l~~  356 (570)
T 2z63_A          291 SVTIER-VKDFSYNF-GWQHLELVNCKFGQFPT---------LKLKSLKRLTFTSNKGGNAFSE---VDLPSLEFLDLSR  356 (570)
T ss_dssp             SCEECS-CCBCCSCC-CCSEEEEESCBCSSCCB---------CBCSSCCEEEEESCBSCCBCCC---CBCTTCCEEECCS
T ss_pred             Cccchh-hhhhhccC-CccEEeeccCcccccCc---------ccccccCEEeCcCCcccccccc---ccCCCCCEEeCcC
Confidence            998874 55566777 99999999998874433         3678999999999988765544   3458999999999


Q ss_pred             CCCCCCc--chhhhccCCCCeecccCCcccccccccccCCCCCCEEEccCCcccccCC-ccccCCCCCCeEeccCccccc
Q 046712          339 NQISDTI--PDVIANLVNLNALGVESNQLAGTIPLAIGELKSIQILFLNENFLRGTIP-SSLGNLTLLTQLILEVNNLQG  415 (566)
Q Consensus       339 ~~~~~~~--~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~-~~~~~~~~L~~L~l~~~~l~~  415 (566)
                      |.+++..  +..+..+++|++|++++|.+.+..+. +..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+
T Consensus       357 n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~  435 (570)
T 2z63_A          357 NGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRV  435 (570)
T ss_dssp             SCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEE
T ss_pred             CccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccc
Confidence            9987653  67788999999999999999865554 8999999999999999986655 578899999999999999998


Q ss_pred             cCCCCCcCCCCCcEEEccCCcceeccchhhhhhcccceEEEccCCcccccCCcCccCCCCCCEEeCccccccccCCcccc
Q 046712          416 KIPPSNGNCQNLILLTTRKNKLSGIVPRQLLRIITLSVLLDLSDNLLSGHFPTKVGNLKNLVSLDISSNMFSGEIPTTLG  495 (566)
Q Consensus       416 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~l~~~~~~~~~  495 (566)
                      ..+..+..+++|++|++++|.+.+                        +..+..+..+++|++|++++|++.+..|..+.
T Consensus       436 ~~~~~~~~l~~L~~L~l~~n~l~~------------------------~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~  491 (570)
T 2z63_A          436 AFNGIFNGLSSLEVLKMAGNSFQE------------------------NFLPDIFTELRNLTFLDLSQCQLEQLSPTAFN  491 (570)
T ss_dssp             CCTTTTTTCTTCCEEECTTCEEGG------------------------GEECSCCTTCTTCCEEECTTSCCCEECTTTTT
T ss_pred             cchhhhhcCCcCcEEECcCCcCcc------------------------ccchhhhhcccCCCEEECCCCccccCChhhhh
Confidence            888889999999999888887641                        12345567788899999999998877788888


Q ss_pred             CCCCCcEEeCCCCcccccCCcCCcCCCCCCEEeCCCCccccccC
Q 046712          496 GCTSLEYLGMQDNSFTISIPSTLSSLKSITELDLSRNNLSGHIP  539 (566)
Q Consensus       496 ~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~  539 (566)
                      .+++|++|++++|.+++..++.+..+++|+.|++++|++.+..|
T Consensus       492 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  535 (570)
T 2z63_A          492 SLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  535 (570)
T ss_dssp             TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred             cccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCc
Confidence            89999999999999887777788889999999999998886655

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=1.3e-43  Score=366.55  Aligned_cols=455  Identities=19%  Similarity=0.236  Sum_probs=262.1

Q ss_pred             EEEEcCCCccccccCccCcCCCCCCEEecCCCcccccCCcccCCCCCCCEEeCCCCcCCCcCccccccCCCCcEEEcCCC
Q 046712           37 TGLDLRHQSVGGVLSPFVGNLNFLRSINLPNNSFRGKIPHEVGNLFRLQNLTLTNNYFLGKILTDLSHCSNLMKFEASNN  116 (566)
Q Consensus        37 ~~l~l~~~~i~~~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~  116 (566)
                      +++++++++++. +|..+.  ++|++|++++|.+++..|.+|.++++|++|++++|.+++..+..|+++++|++|++++|
T Consensus         3 ~~l~ls~n~l~~-ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N   79 (520)
T 2z7x_B            3 FLVDRSKNGLIH-VPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN   79 (520)
T ss_dssp             CEEECTTSCCSS-CCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS
T ss_pred             ceEecCCCCccc-cccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC
Confidence            578999999985 455454  89999999999998666678999999999999999988877888999999999999999


Q ss_pred             cCCCCcchhccCCCCCCEEecccccCCC-CCCccccCCCCCCEEEccCCcCcccCCcccccCCcc--cEeecccccc--e
Q 046712          117 KLEGEIPVKISNLLMLQILNIAENHLKG-QLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNL--ISFNVAYNQF--S  191 (566)
Q Consensus       117 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L--~~L~l~~~~~--~  191 (566)
                      +++ .+|..  .+++|++|++++|.+.+ .+|..++.+++|++|++++|.+.+   ..+..+++|  +.|++++|.+  .
T Consensus        80 ~l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~  153 (520)
T 2z7x_B           80 KLV-KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGE  153 (520)
T ss_dssp             CCC-EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTS
T ss_pred             cee-ecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeeccccccc
Confidence            988 56655  78899999999999875 467888999999999999988864   456677777  8888888877  3


Q ss_pred             ecCC-cccCcc-cCceEecccccccccCCCCCCCCCCCCcEEEccccc-------ccccCcccccccCCCCeeecccccc
Q 046712          192 GMIP-PIYNIS-SLQYIFIHTNRFHGSVPLDNGVNLPNLRYFSISGNN-------LTGSLQDSLSNATNLQGLEINRNLF  262 (566)
Q Consensus       192 ~~~~-~l~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-------~~~~~~~~l~~~~~L~~L~l~~~~~  262 (566)
                      +..+ .+..+. ....++++++.+.+.++......+++|+.+++++|.       +.+..+ .+..+++|+.+++.++.+
T Consensus       154 ~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l  232 (520)
T 2z7x_B          154 KEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIET  232 (520)
T ss_dssp             SCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEEE
T ss_pred             ccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhcccccccc
Confidence            3332 333322 222445555555555554444455666666665553       222221 334444444444444433


Q ss_pred             cccccccccCCCCCcEEECCCCccCCcCCCChhhhhhccCCCCCCEEEccCCeeeeecchhHh----hhccCCcEEEccC
Q 046712          263 SGKVSINFSRLQNLSRLNLGENNLGTGTTNDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLA----NLSTTMTEIAIGS  338 (566)
Q Consensus       263 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~----~~~~~L~~L~l~~  338 (566)
                      .+.....+.                          . ....++|+.|++++|.+.+..|..+.    ...+.|+.+++.+
T Consensus       233 ~~~~~~~~~--------------------------~-~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~  285 (520)
T 2z7x_B          233 TWNSFIRIL--------------------------Q-LVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVS  285 (520)
T ss_dssp             EHHHHHHHH--------------------------H-HHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEE
T ss_pred             CHHHHHHHH--------------------------H-HhhhCcccEEEeecccccCccccchhhcccccCceeEeccccc
Confidence            221110000                          0 00123555555555555444433321    1113344444444


Q ss_pred             CCCCCCcc-hhhhcc---CCCCeecccCCcccccccccccCCCCCCEEEccCCcccccCCccccCCCCCCeEeccCcccc
Q 046712          339 NQISDTIP-DVIANL---VNLNALGVESNQLAGTIPLAIGELKSIQILFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQ  414 (566)
Q Consensus       339 ~~~~~~~~-~~~~~l---~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~  414 (566)
                      +.+  .+| ..+..+   .+|+.|++++|.+....  ....+++|++|++++|.+++..+..+..+++|++|++++|++.
T Consensus       286 n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~  361 (520)
T 2z7x_B          286 DVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLK  361 (520)
T ss_dssp             CCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCC
T ss_pred             cce--ecchhhhhcccccCceeEEEcCCCcccccc--chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccC
Confidence            443  122 222222   34555555555544221  1134455555555555555444444555555555555555544


Q ss_pred             c--cCCCCCcCCCCCcEEEccCCcceeccchhhhhhcccceEEEccCCcccccCCcCccCCCCCCEEeCccccccccCCc
Q 046712          415 G--KIPPSNGNCQNLILLTTRKNKLSGIVPRQLLRIITLSVLLDLSDNLLSGHFPTKVGNLKNLVSLDISSNMFSGEIPT  492 (566)
Q Consensus       415 ~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~l~~~~~~  492 (566)
                      +  .+|..+..+++|++|++++|.+.+.+|.                        ..+..+++|++|++++|.+.+..+.
T Consensus       362 ~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~------------------------~~~~~l~~L~~L~Ls~N~l~~~~~~  417 (520)
T 2z7x_B          362 ELSKIAEMTTQMKSLQQLDISQNSVSYDEKK------------------------GDCSWTKSLLSLNMSSNILTDTIFR  417 (520)
T ss_dssp             BHHHHHHHHTTCTTCCEEECCSSCCBCCGGG------------------------CSCCCCTTCCEEECCSSCCCGGGGG
T ss_pred             ccccchHHHhhCCCCCEEECCCCcCCccccc------------------------chhccCccCCEEECcCCCCCcchhh
Confidence            3  2223344444444444444444432222                        2345556666666666665544444


Q ss_pred             cccCCCCCcEEeCCCCcccccCCcCCcCCCCCCEEeCCCCccccccCc-cccccccCceeecccCcCcc
Q 046712          493 TLGGCTSLEYLGMQDNSFTISIPSTLSSLKSITELDLSRNNLSGHIPQ-YLENLSFLLFLNMSYNHFEG  560 (566)
Q Consensus       493 ~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~-~l~~l~~L~~L~l~~n~~~~  560 (566)
                      .+.  ++|++|++++|.++ .+|.++..+++|++|++++|+++. +|. .+..+++|++|++++|++++
T Consensus       418 ~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~L~~L~l~~N~~~c  482 (520)
T 2z7x_B          418 CLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKS-VPDGIFDRLTSLQKIWLHTNPWDC  482 (520)
T ss_dssp             SCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             hhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCc-cCHHHhccCCcccEEECcCCCCcc
Confidence            332  45666666666665 455555566666666666666653 333 35556666666666665554

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=2.8e-42  Score=362.87  Aligned_cols=367  Identities=18%  Similarity=0.266  Sum_probs=269.8

Q ss_pred             CCCCEEecCCCcccccCCcccCCCCCCCEEeCCCCcCC------C---------------------------cCccccc-
Q 046712           58 NFLRSINLPNNSFRGKIPHEVGNLFRLQNLTLTNNYFL------G---------------------------KILTDLS-  103 (566)
Q Consensus        58 ~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~l~~~~l~------~---------------------------~~~~~~~-  103 (566)
                      .+++.|+++++.+.+.+|.+++++++|++|++++|.+.      +                           ..+..+. 
T Consensus        81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~  160 (636)
T 4eco_A           81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSD  160 (636)
T ss_dssp             CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred             CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHH
Confidence            58999999999999999999999999999999999651      1                           0000000 


Q ss_pred             ------------------cCCCCcEEEcC--CCcCCCCcchhccCCCCCCEEecccccCCCC-----------------C
Q 046712          104 ------------------HCSNLMKFEAS--NNKLEGEIPVKISNLLMLQILNIAENHLKGQ-----------------L  146 (566)
Q Consensus       104 ------------------~l~~L~~L~l~--~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-----------------~  146 (566)
                                        ....++.+.+.  .|++++ +|..++++++|++|++++|.+.+.                 +
T Consensus       161 ~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~i  239 (636)
T 4eco_A          161 LIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYK  239 (636)
T ss_dssp             HHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT
T ss_pred             HHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccC
Confidence                              01112222222  467776 888999999999999999999975                 9


Q ss_pred             Ccccc--CCCCCCEEEccCCcCcccCCcccccCCcccEeeccccc-cee-cCC-cccCc------ccCceEecccccccc
Q 046712          147 PASIG--NLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVAYNQ-FSG-MIP-PIYNI------SSLQYIFIHTNRFHG  215 (566)
Q Consensus       147 ~~~~~--~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~-~~~-~~~-~l~~~------~~L~~L~l~~~~~~~  215 (566)
                      |..++  ++++|++|++++|.+.+.+|..+.++++|+.|++++|. +.+ ..+ .+..+      ++|++|++++|.++ 
T Consensus       240 p~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-  318 (636)
T 4eco_A          240 TEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-  318 (636)
T ss_dssp             TSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-
T ss_pred             chhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-
Confidence            99999  99999999999999999999999999999999999998 775 333 55554      99999999999998 


Q ss_pred             cCCC--CCCCCCCCCcEEEcccccccccCcccccccCCCCeeecccccccccccccccCCCC-CcEEECCCCccCCcCCC
Q 046712          216 SVPL--DNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINRNLFSGKVSINFSRLQN-LSRLNLGENNLGTGTTN  292 (566)
Q Consensus       216 ~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~~  292 (566)
                      .+|.  .+. .+++|++|++++|.+.+..+ .+..+++|+.|++++|.+. ..+..+..+++ |++|++++|.+...+..
T Consensus       319 ~ip~~~~l~-~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~  395 (636)
T 4eco_A          319 TFPVETSLQ-KMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLKYIPNI  395 (636)
T ss_dssp             SCCCHHHHT-TCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCSSCCSC
T ss_pred             ccCchhhhc-cCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCcccchh
Confidence            7777  454 89999999999999997677 8999999999999999998 56666888899 99999999998854431


Q ss_pred             ChhhhhhccCCCCCCEEEccCCeeeeecchhHhh------hccCCcEEEccCCCCCCCcchhhhccCCCCeecccCCccc
Q 046712          293 DLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLAN------LSTTMTEIAIGSNQISDTIPDVIANLVNLNALGVESNQLA  366 (566)
Q Consensus       293 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~------~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~  366 (566)
                           .....+++|+.|++++|.+.+..|..+..      ..++|++|++++|.++...+..+..+++|++|++++|.++
T Consensus       396 -----~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~  470 (636)
T 4eco_A          396 -----FDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT  470 (636)
T ss_dssp             -----CCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS
T ss_pred             -----hhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC
Confidence                 11123458999999999998766655431      1246677777777766433344455677777777777666


Q ss_pred             ccccccccCCC-------CCCEEEccCCcccccCCcccc--CCCCCCeEeccCccccccCCCCCcCCCCCcEEEccCCc
Q 046712          367 GTIPLAIGELK-------SIQILFLNENFLRGTIPSSLG--NLTLLTQLILEVNNLQGKIPPSNGNCQNLILLTTRKNK  436 (566)
Q Consensus       367 ~~~~~~~~~~~-------~L~~L~l~~n~~~~~~~~~~~--~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~  436 (566)
                      ......+....       +|++|++++|.++ .+|..+.  .+++|+.|++++|++.+ +|..+..+++|+.|++++|+
T Consensus       471 ~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~  547 (636)
T 4eco_A          471 EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQR  547 (636)
T ss_dssp             BCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCB
T ss_pred             CcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCc
Confidence            33322332222       6666666666666 4555554  56666666666666654 55555555555555555543

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=4.3e-40  Score=349.50  Aligned_cols=510  Identities=18%  Similarity=0.148  Sum_probs=390.6

Q ss_pred             EEcCCCccccccCccCcCCCCCCEEecCCCcccccCCcccCCCCCCCEEeCCCCcCCCcCccccccCCCCcEEEcCCCcC
Q 046712           39 LDLRHQSVGGVLSPFVGNLNFLRSINLPNNSFRGKIPHEVGNLFRLQNLTLTNNYFLGKILTDLSHCSNLMKFEASNNKL  118 (566)
Q Consensus        39 l~l~~~~i~~~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~  118 (566)
                      .+=++.+++. +|..+.  +++++|+|++|.|+...+.+|.++++|++|++++|.++...+.+|.++++|++|++++|++
T Consensus        36 ~~c~~~~l~~-vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l  112 (635)
T 4g8a_A           36 YQCMELNFYK-IPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI  112 (635)
T ss_dssp             EECTTSCCSS-CCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred             EECCCCCcCc-cCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcC
Confidence            3444445553 343332  4899999999999977788999999999999999999988888999999999999999999


Q ss_pred             CCCcchhccCCCCCCEEecccccCCCCCCccccCCCCCCEEEccCCcCcc-cCCcccccCCcccEeecccccceecCC-c
Q 046712          119 EGEIPVKISNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGG-RIPSTISHVRNLISFNVAYNQFSGMIP-P  196 (566)
Q Consensus       119 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~-~  196 (566)
                      ++..+..|.++++|++|++++|.+.+..+..++.+++|++|++++|.+.. ..|..+..+++|+.|++++|.+.+..+ .
T Consensus       113 ~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~  192 (635)
T 4g8a_A          113 QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD  192 (635)
T ss_dssp             CEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGG
T ss_pred             CCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccccccccc
Confidence            97667789999999999999999996666779999999999999999874 467888999999999999999987765 4


Q ss_pred             ccCcccC----ceEecccccccccCCCCCCCCCCCCcEEEcccccccc-cCcccccccCCCCeeecccccc------ccc
Q 046712          197 IYNISSL----QYIFIHTNRFHGSVPLDNGVNLPNLRYFSISGNNLTG-SLQDSLSNATNLQGLEINRNLF------SGK  265 (566)
Q Consensus       197 l~~~~~L----~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~l~~~~~L~~L~l~~~~~------~~~  265 (566)
                      +..+..+    ..++++.+.+.. ++.... ....++.+++.++.... .....+..+..++...+.....      ...
T Consensus       193 l~~L~~l~~~~~~~~ls~n~l~~-i~~~~~-~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~  270 (635)
T 4g8a_A          193 LRVLHQMPLLNLSLDLSLNPMNF-IQPGAF-KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKF  270 (635)
T ss_dssp             GHHHHTCTTCCCEEECTTCCCCE-ECTTTT-TTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCC
T ss_pred             ccchhhhhhhhhhhhcccCcccc-cCcccc-cchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccc
Confidence            4444433    456777777763 333333 34456777877764431 2233455566666555433221      111


Q ss_pred             ccccccCCCCCcEEECCCCccCCcCCCChhhhhhccCCCCCCEEEccCCeeeeecchhHhhhccCCcEEEccCCCCCCCc
Q 046712          266 VSINFSRLQNLSRLNLGENNLGTGTTNDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQISDTI  345 (566)
Q Consensus       266 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~  345 (566)
                      ....+.....+....+..+.......   .....+..+.+++.+.+.++.+....+..   ....++.|++.++.+....
T Consensus       271 ~~~~~~~~~~l~~~~l~~~~~~~~~~---~~~~~~~~~~~l~~l~~~~~~~~~~~~~~---~~~~L~~L~l~~~~~~~~~  344 (635)
T 4g8a_A          271 DKSALEGLCNLTIEEFRLAYLDYYLD---GIIDLFNCLTNVSSFSLVSVTIERVKDFS---YNFGWQHLELVNCKFGQFP  344 (635)
T ss_dssp             CTTTTGGGGGSEEEEEEEECCCSCEE---ECTTTTGGGTTCSEEEEESCEEEECGGGG---SCCCCSEEEEESCEESSCC
T ss_pred             cccccccccchhhhhhhhhhhccccc---chhhhhhhhcccccccccccccccccccc---cchhhhhhhcccccccCcC
Confidence            22223344444444443332211110   01123456678999999999887554322   2368999999999887543


Q ss_pred             chhhhccCCCCeecccCCcccccccccccCCCCCCEEEccCCcccc--cCCccccCCCCCCeEeccCccccccCCCCCcC
Q 046712          346 PDVIANLVNLNALGVESNQLAGTIPLAIGELKSIQILFLNENFLRG--TIPSSLGNLTLLTQLILEVNNLQGKIPPSNGN  423 (566)
Q Consensus       346 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~--~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~  423 (566)
                      +   ..++.|+.+++.++......  ....+++|+.+++++|.+..  ..+..+..+.+|+.+++..+.... .+..+..
T Consensus       345 ~---~~l~~L~~l~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~-~~~~~~~  418 (635)
T 4g8a_A          345 T---LKLKSLKRLTFTSNKGGNAF--SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVIT-MSSNFLG  418 (635)
T ss_dssp             C---CBCTTCCEEEEESCCSCCBC--CCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEE-ECSCCTT
T ss_pred             c---ccchhhhhcccccccCCCCc--ccccccccccchhhccccccccccccchhhhhhhhhhhcccccccc-ccccccc
Confidence            3   34678999999998876432  34578999999999999853  345566778999999999998773 4566788


Q ss_pred             CCCCcEEEccCCcceeccchhhhhhcccceEEEccCCcccccCCcCccCCCCCCEEeCcccccc-ccCCccccCCCCCcE
Q 046712          424 CQNLILLTTRKNKLSGIVPRQLLRIITLSVLLDLSDNLLSGHFPTKVGNLKNLVSLDISSNMFS-GEIPTTLGGCTSLEY  502 (566)
Q Consensus       424 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~l~-~~~~~~~~~~~~L~~  502 (566)
                      +++|+.+++..+......+...+.....++.+++++|.+.+..+..+..+++|+.|++++|+.. ...|..|..+++|++
T Consensus       419 l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~  498 (635)
T 4g8a_A          419 LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTF  498 (635)
T ss_dssp             CTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCE
T ss_pred             cccccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCE
Confidence            9999999999998876666555555556699999999999888899999999999999999754 357788999999999


Q ss_pred             EeCCCCcccccCCcCCcCCCCCCEEeCCCCccccccCccccccccCceeecccCcCcccCCCC
Q 046712          503 LGMQDNSFTISIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLLFLNMSYNHFEGKVPIE  565 (566)
Q Consensus       503 L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~  565 (566)
                      |+|++|.+++..|.+|.++++|++|+|++|++++..|..|..+++|+.|++++|++++..|..
T Consensus       499 L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~  561 (635)
T 4g8a_A          499 LDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQE  561 (635)
T ss_dssp             EECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSC
T ss_pred             EECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHH
Confidence            999999999888999999999999999999999888899999999999999999999988753

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=1.8e-41  Score=350.51  Aligned_cols=438  Identities=17%  Similarity=0.196  Sum_probs=323.1

Q ss_pred             CcEEEEEcCCCccccccCccCcCCCCCCEEecCCCcccccCCcccCCCCCCCEEeCCCCcCCCcCccccccCCCCcEEEc
Q 046712           34 QRVTGLDLRHQSVGGVLSPFVGNLNFLRSINLPNNSFRGKIPHEVGNLFRLQNLTLTNNYFLGKILTDLSHCSNLMKFEA  113 (566)
Q Consensus        34 ~~~~~l~l~~~~i~~~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l  113 (566)
                      +++++|++++|.+++..+..|.++++|++|++++|.+++..|.+|.++++|++|++++|.++. .+..  .+++|++|++
T Consensus        21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-lp~~--~l~~L~~L~L   97 (520)
T 2z7x_B           21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVK-ISCH--PTVNLKHLDL   97 (520)
T ss_dssp             TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCE-EECC--CCCCCSEEEC
T ss_pred             ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceee-cCcc--ccCCccEEec
Confidence            789999999999998888899999999999999999998789999999999999999999984 4433  8999999999


Q ss_pred             CCCcCCC-CcchhccCCCCCCEEecccccCCCCCCccccCCCCC--CEEEccCCcC--cccCCcccccCC-cccEeeccc
Q 046712          114 SNNKLEG-EIPVKISNLLMLQILNIAENHLKGQLPASIGNLSAL--QEIDVRGNRL--GGRIPSTISHVR-NLISFNVAY  187 (566)
Q Consensus       114 ~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L--~~L~l~~~~i--~~~~~~~l~~l~-~L~~L~l~~  187 (566)
                      ++|.+++ .+|..++++++|++|++++|.+.+   ..+..+++|  ++|++++|.+  .+..|..+..+. ....+++++
T Consensus        98 ~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~  174 (520)
T 2z7x_B           98 SFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPT  174 (520)
T ss_dssp             CSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCS
T ss_pred             cCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeecccccccccccccccccccceEEEEecc
Confidence            9999986 467899999999999999999874   457778888  9999999999  777788887765 344567777


Q ss_pred             ccceecCC--cccCcccCceEeccccc-------ccccCCCCCCCCCCCCcEEEcccccccccCcccc---cccCCCCee
Q 046712          188 NQFSGMIP--PIYNISSLQYIFIHTNR-------FHGSVPLDNGVNLPNLRYFSISGNNLTGSLQDSL---SNATNLQGL  255 (566)
Q Consensus       188 ~~~~~~~~--~l~~~~~L~~L~l~~~~-------~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l---~~~~~L~~L  255 (566)
                      |.+.+...  .+..++.|+.+++++|.       +.+.++ .. ..+++|+.|+++++.+.+.....+   ...++|+++
T Consensus       175 n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l-~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L  252 (520)
T 2z7x_B          175 NKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KL-QTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYF  252 (520)
T ss_dssp             SSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GG-GGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEE
T ss_pred             Ccchhhhhhhhhhcccceeeccccccccccccceeecchh-hh-ccccchhhccccccccCHHHHHHHHHHhhhCcccEE
Confidence            77765444  56689999999999886       444444 22 378999999999987764322211   124588888


Q ss_pred             ecccccccccccccccCCCCCcEEECCCCccCCcCCCChhhhhhccCCCCCCEEEccCCeeeeecc-hhHhhhc--cCCc
Q 046712          256 EINRNLFSGKVSINFSRLQNLSRLNLGENNLGTGTTNDLDFITLLTNCTKLEVLDLHSNRFGGVLP-FSLANLS--TTMT  332 (566)
Q Consensus       256 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~--~~L~  332 (566)
                      ++++|.+.+..+..+...                         ....+++|+.++++++.+  ..| ..+....  ..++
T Consensus       253 ~l~~n~l~~~~p~~~~~~-------------------------~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~  305 (520)
T 2z7x_B          253 SISNVKLQGQLDFRDFDY-------------------------SGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIK  305 (520)
T ss_dssp             EEEEEEEESCCCCCCCCC-------------------------CSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCS
T ss_pred             EeecccccCccccchhhc-------------------------ccccCceeEeccccccce--ecchhhhhcccccCcee
Confidence            888888775555444100                         012334444455544444  222 2222211  3466


Q ss_pred             EEEccCCCCCCCcchhhhccCCCCeecccCCcccccccccccCCCCCCEEEccCCcccc--cCCccccCCCCCCeEeccC
Q 046712          333 EIAIGSNQISDTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSIQILFLNENFLRG--TIPSSLGNLTLLTQLILEV  410 (566)
Q Consensus       333 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~--~~~~~~~~~~~L~~L~l~~  410 (566)
                      .|++++|.+....  .+..+++|++|++++|.+++..+..+..+++|++|++++|.+++  .++..+..+++|++|++++
T Consensus       306 ~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~  383 (520)
T 2z7x_B          306 NFTVSGTRMVHML--CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQ  383 (520)
T ss_dssp             EEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCS
T ss_pred             EEEcCCCcccccc--chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCC
Confidence            6666666554321  12467888888888888887777778888888888888888875  3445677888888888888


Q ss_pred             ccccccCCC-CCcCCCCCcEEEccCCcceeccchhhhhhcccceEEEccCCcccccCCcCccCCCCCCEEeCcccccccc
Q 046712          411 NNLQGKIPP-SNGNCQNLILLTTRKNKLSGIVPRQLLRIITLSVLLDLSDNLLSGHFPTKVGNLKNLVSLDISSNMFSGE  489 (566)
Q Consensus       411 ~~l~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~l~~~  489 (566)
                      |.+.+.+|. .+..+++|++|++++|.+.+..+.                         .+.  ++|+.|++++|++. .
T Consensus       384 N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~-------------------------~l~--~~L~~L~Ls~N~l~-~  435 (520)
T 2z7x_B          384 NSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFR-------------------------CLP--PRIKVLDLHSNKIK-S  435 (520)
T ss_dssp             SCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGG-------------------------SCC--TTCCEEECCSSCCC-C
T ss_pred             CcCCcccccchhccCccCCEEECcCCCCCcchhh-------------------------hhc--ccCCEEECCCCccc-c
Confidence            888864554 466778888888888776533222                         111  57888888888887 6


Q ss_pred             CCccccCCCCCcEEeCCCCcccccCCcC-CcCCCCCCEEeCCCCccccc
Q 046712          490 IPTTLGGCTSLEYLGMQDNSFTISIPST-LSSLKSITELDLSRNNLSGH  537 (566)
Q Consensus       490 ~~~~~~~~~~L~~L~L~~n~~~~~~~~~-l~~l~~L~~L~l~~n~~~~~  537 (566)
                      +|..+..+++|++|++++|.++. +|.. +..+++|++|++++|++.+.
T Consensus       436 ip~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~L~~L~l~~N~~~c~  483 (520)
T 2z7x_B          436 IPKQVVKLEALQELNVASNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCS  483 (520)
T ss_dssp             CCGGGGGCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred             cchhhhcCCCCCEEECCCCcCCc-cCHHHhccCCcccEEECcCCCCccc
Confidence            77766678888888888888874 4544 77888888888888888753

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=6.1e-41  Score=349.16  Aligned_cols=460  Identities=18%  Similarity=0.191  Sum_probs=260.1

Q ss_pred             EEEEcCCCccccccCccCcCCCCCCEEecCCCcccccCCcccCCCCCCCEEeCCCCcCCCcCccccccCCCCcEEEcCCC
Q 046712           37 TGLDLRHQSVGGVLSPFVGNLNFLRSINLPNNSFRGKIPHEVGNLFRLQNLTLTNNYFLGKILTDLSHCSNLMKFEASNN  116 (566)
Q Consensus        37 ~~l~l~~~~i~~~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~  116 (566)
                      +++++++++++. +|..+.  ++|++|++++|.+++..+.+|.++++|++|++++|.+++..+..|.++++|++|++++|
T Consensus        34 ~~l~ls~~~L~~-ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N  110 (562)
T 3a79_B           34 SMVDYSNRNLTH-VPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHN  110 (562)
T ss_dssp             CEEECTTSCCCS-CCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTS
T ss_pred             cEEEcCCCCCcc-CCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCC
Confidence            677777777775 333332  67777777777777555567777777777777777777666667777777777777777


Q ss_pred             cCCCCcchhccCCCCCCEEecccccCCC-CCCccccCCCCCCEEEccCCcCcccCCcccccCCcc--cEeecccccceec
Q 046712          117 KLEGEIPVKISNLLMLQILNIAENHLKG-QLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNL--ISFNVAYNQFSGM  193 (566)
Q Consensus       117 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L--~~L~l~~~~~~~~  193 (566)
                      .++ .+|..  .+++|++|++++|.+.+ ..|..++++++|++|++++|.+..   ..+..+++|  +.|++++|.+.. 
T Consensus       111 ~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~L~~n~l~~-  183 (562)
T 3a79_B          111 RLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ---LDLLPVAHLHLSCILLDLVSYHI-  183 (562)
T ss_dssp             CCC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCT---TTTGGGTTSCEEEEEEEESSCCC-
T ss_pred             cCC-ccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCcccc---CchhhhhhceeeEEEeecccccc-
Confidence            776 44444  66777777777777663 234566666677777776666653   223333333  555555554410 


Q ss_pred             CCcccCcccCceEecccccccccCCCCCCCCCC-CCcEEEcccccccccC-cccccccCCCCeeeccccccccccccccc
Q 046712          194 IPPIYNISSLQYIFIHTNRFHGSVPLDNGVNLP-NLRYFSISGNNLTGSL-QDSLSNATNLQGLEINRNLFSGKVSINFS  271 (566)
Q Consensus       194 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~-~~~l~~~~~L~~L~l~~~~~~~~~~~~~~  271 (566)
                                          .+..+.... .+. ..-.++++.|.+.... ...+..+++|+.+++++|...        
T Consensus       184 --------------------~~~~~~~l~-~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~--------  234 (562)
T 3a79_B          184 --------------------KGGETESLQ-IPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDEN--------  234 (562)
T ss_dssp             --------------------CSSSCCEEE-ECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTT--------
T ss_pred             --------------------cccCccccc-ccCcceEEEEecCccchhhhhhhcccccceEEEecccccccc--------
Confidence                                111111111 111 0112344444433211 112333444555555444210        


Q ss_pred             CCCCCcEEECCCCccCCcCCCChhhhhhccCCCCCCEEEccCCeeeeecchhHhh--hccCCcEEEccCCCCCCCcchhh
Q 046712          272 RLQNLSRLNLGENNLGTGTTNDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLAN--LSTTMTEIAIGSNQISDTIPDVI  349 (566)
Q Consensus       272 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~  349 (566)
                                    ....    ......+..++.|+.+++.++.+.+.....+..  ..+.|++|++++|.+.+.+|..+
T Consensus       235 --------------~~~l----~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~  296 (562)
T 3a79_B          235 --------------CQRL----MTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREE  296 (562)
T ss_dssp             --------------HHHH----HHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCC
T ss_pred             --------------cchH----HHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchh
Confidence                          0000    001123444555555555555443221111110  11356666666666655555444


Q ss_pred             -----hccCCCCeecccCCccccccccccc---CCCCCCEEEccCCcccccCCccccCCCCCCeEeccCccccccCCCCC
Q 046712          350 -----ANLVNLNALGVESNQLAGTIPLAIG---ELKSIQILFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSN  421 (566)
Q Consensus       350 -----~~l~~L~~L~l~~~~~~~~~~~~~~---~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~  421 (566)
                           ..++.|+.+++..+.+. .....+.   ...+|++|++++|.+....  ....+++|++|++++|.+.+..+..+
T Consensus       297 ~~~~~~~L~~L~~~~~~~~~~~-~p~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~  373 (562)
T 3a79_B          297 FTYSETALKSLMIEHVKNQVFL-FSKEALYSVFAEMNIKMLSISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGC  373 (562)
T ss_dssp             CCCCSCSCCEEEEEEEEECCCS-SCHHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTC
T ss_pred             hhcccccchheehhhcccceee-cChhhhhhhhccCcceEEEccCCCccccc--CccCCCCceEEECCCCccccchhhhh
Confidence                 33333444444444331 1111111   1245777777777664211  12456677777777777776666667


Q ss_pred             cCCCCCcEEEccCCcceec--cchhhhhhcccceEEEccCCcccc-cCCcCccCCCCCCEEeCccccccccCCccccCCC
Q 046712          422 GNCQNLILLTTRKNKLSGI--VPRQLLRIITLSVLLDLSDNLLSG-HFPTKVGNLKNLVSLDISSNMFSGEIPTTLGGCT  498 (566)
Q Consensus       422 ~~~~~L~~L~l~~~~~~~~--~~~~~~~~~~~l~~L~l~~~~~~~-~~~~~~~~~~~L~~L~ls~~~l~~~~~~~~~~~~  498 (566)
                      ..+++|++|++++|++.+.  .+..+..+..+ +.|++++|.+.+ .....+..+++|++|++++|++.+..+..+.  +
T Consensus       374 ~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L-~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~  450 (562)
T 3a79_B          374 STLKRLQTLILQRNGLKNFFKVALMTKNMSSL-ETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--P  450 (562)
T ss_dssp             CSCSSCCEEECCSSCCCBTTHHHHTTTTCTTC-CEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--T
T ss_pred             cccCCCCEEECCCCCcCCcccchhhhcCCCCC-CEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--C
Confidence            7777777777777776642  22334444444 777777777766 3334467778888888888887655554443  6


Q ss_pred             CCcEEeCCCCcccccCCcCCcCCCCCCEEeCCCCccccccCcc-ccccccCceeecccCcCccc
Q 046712          499 SLEYLGMQDNSFTISIPSTLSSLKSITELDLSRNNLSGHIPQY-LENLSFLLFLNMSYNHFEGK  561 (566)
Q Consensus       499 ~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~-l~~l~~L~~L~l~~n~~~~~  561 (566)
                      +|++|++++|.++ .+|.++..+++|++|++++|+++ .+|.. +..+++|+.|++++|++++.
T Consensus       451 ~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~  512 (562)
T 3a79_B          451 KVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNPWDCT  512 (562)
T ss_dssp             TCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTTCCCEECCSCCBCCC
T ss_pred             cCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCCCCEEEecCCCcCCC
Confidence            7888888888877 56666667888888888888887 44444 77888888888888877654

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=1.7e-40  Score=345.90  Aligned_cols=440  Identities=17%  Similarity=0.184  Sum_probs=292.0

Q ss_pred             CcEEEEEcCCCccccccCccCcCCCCCCEEecCCCcccccCCcccCCCCCCCEEeCCCCcCCCcCccccccCCCCcEEEc
Q 046712           34 QRVTGLDLRHQSVGGVLSPFVGNLNFLRSINLPNNSFRGKIPHEVGNLFRLQNLTLTNNYFLGKILTDLSHCSNLMKFEA  113 (566)
Q Consensus        34 ~~~~~l~l~~~~i~~~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l  113 (566)
                      +.+++|++++|.+++..+..|.++++|++|++++|.+++..|++|.++++|++|++++|.++.. +..  .+++|++|++
T Consensus        52 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l-p~~--~l~~L~~L~L  128 (562)
T 3a79_B           52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNI-SCC--PMASLRHLDL  128 (562)
T ss_dssp             TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCEE-CSC--CCTTCSEEEC
T ss_pred             CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCcc-Ccc--ccccCCEEEC
Confidence            7899999999999999889999999999999999999988899999999999999999999844 433  8999999999


Q ss_pred             CCCcCCCC-cchhccCCCCCCEEecccccCCCCCCccccCCCCC--CEEEccCCcC--cccCCcccccCCc-ccEeeccc
Q 046712          114 SNNKLEGE-IPVKISNLLMLQILNIAENHLKGQLPASIGNLSAL--QEIDVRGNRL--GGRIPSTISHVRN-LISFNVAY  187 (566)
Q Consensus       114 ~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L--~~L~l~~~~i--~~~~~~~l~~l~~-L~~L~l~~  187 (566)
                      ++|++++. .|..+.++++|++|++++|.+.+.   .+..+++|  ++|++++|.+  ++..|..+..+.. .-.+++++
T Consensus       129 s~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~  205 (562)
T 3a79_B          129 SFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHP  205 (562)
T ss_dssp             CSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECS
T ss_pred             CCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeecccccccccCcccccccCcceEEEEecC
Confidence            99999853 457899999999999999999753   45555555  9999999998  7777777776541 11334555


Q ss_pred             ccceecCCcccCcccCceEecccccccccCCCCCCCCCCCCcEEEccccccc----ccCcccccccCCCCeeeccccccc
Q 046712          188 NQFSGMIPPIYNISSLQYIFIHTNRFHGSVPLDNGVNLPNLRYFSISGNNLT----GSLQDSLSNATNLQGLEINRNLFS  263 (566)
Q Consensus       188 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~----~~~~~~l~~~~~L~~L~l~~~~~~  263 (566)
                      |.+.....                       ......+++|+.+++++|...    ......+...++|+.+++.++.+.
T Consensus       206 n~~~~~~~-----------------------~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~  262 (562)
T 3a79_B          206 NSLFSVQV-----------------------NMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETT  262 (562)
T ss_dssp             SSCCCCCC-----------------------EEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEEC
T ss_pred             ccchhhhh-----------------------hhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCc
Confidence            54433222                       222223445555555554210    011223455666666666665543


Q ss_pred             cccccc---ccCCCCCcEEECCCCccCCcCCCCh-hhhhhccCCCCCCEEEccCCeeeeecc-hhHhhh--ccCCcEEEc
Q 046712          264 GKVSIN---FSRLQNLSRLNLGENNLGTGTTNDL-DFITLLTNCTKLEVLDLHSNRFGGVLP-FSLANL--STTMTEIAI  336 (566)
Q Consensus       264 ~~~~~~---~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~--~~~L~~L~l  336 (566)
                      ......   ....++|++|++++|.+....+... .  .....++.|+.+++..+.+  ..| ..+...  ...+++|++
T Consensus       263 ~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~--~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l  338 (562)
T 3a79_B          263 WKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFT--YSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLSI  338 (562)
T ss_dssp             HHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCC--CCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSEEEE
T ss_pred             HHHHHHHHHhhhcccccEEEEeccEeeccccchhhh--cccccchheehhhccccee--ecChhhhhhhhccCcceEEEc
Confidence            211110   1223477777777777663322110 0  0013344444444444444  222 222221  145777777


Q ss_pred             cCCCCCCCcchhhhccCCCCeecccCCcccccccccccCCCCCCEEEccCCccccc--CCccccCCCCCCeEeccCcccc
Q 046712          337 GSNQISDTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSIQILFLNENFLRGT--IPSSLGNLTLLTQLILEVNNLQ  414 (566)
Q Consensus       337 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~--~~~~~~~~~~L~~L~l~~~~l~  414 (566)
                      ++|.+....  ....+++|++|++++|.+++..+..+..+++|++|++++|.+++.  .+..+..+++|++|++++|.+.
T Consensus       339 ~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~  416 (562)
T 3a79_B          339 SDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLN  416 (562)
T ss_dssp             ESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCB
T ss_pred             cCCCccccc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCC
Confidence            777664321  124567777777777777766666677777777777777777642  2345666777777777777776


Q ss_pred             ccCCC-CCcCCCCCcEEEccCCcceeccchhhhhhcccceEEEccCCcccccCCcCccCCCCCCEEeCccccccccCCcc
Q 046712          415 GKIPP-SNGNCQNLILLTTRKNKLSGIVPRQLLRIITLSVLLDLSDNLLSGHFPTKVGNLKNLVSLDISSNMFSGEIPTT  493 (566)
Q Consensus       415 ~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~l~~~~~~~  493 (566)
                      +.+|. .+..+++|++|++++|.+.+                         ..+..+.  ++|+.|++++|++. .+|..
T Consensus       417 ~~~~~~~~~~l~~L~~L~l~~n~l~~-------------------------~~~~~l~--~~L~~L~L~~N~l~-~ip~~  468 (562)
T 3a79_B          417 SHAYDRTCAWAESILVLNLSSNMLTG-------------------------SVFRCLP--PKVKVLDLHNNRIM-SIPKD  468 (562)
T ss_dssp             SCCSSCCCCCCTTCCEEECCSSCCCG-------------------------GGGSSCC--TTCSEEECCSSCCC-CCCTT
T ss_pred             CccChhhhcCcccCCEEECCCCCCCc-------------------------chhhhhc--CcCCEEECCCCcCc-ccChh
Confidence            53433 35566666666666665542                         2222222  57888888888887 66666


Q ss_pred             ccCCCCCcEEeCCCCcccccCCcC-CcCCCCCCEEeCCCCccccc
Q 046712          494 LGGCTSLEYLGMQDNSFTISIPST-LSSLKSITELDLSRNNLSGH  537 (566)
Q Consensus       494 ~~~~~~L~~L~L~~n~~~~~~~~~-l~~l~~L~~L~l~~n~~~~~  537 (566)
                      +..+++|++|++++|.++ .+|.. +..+++|+.|++++|++.+.
T Consensus       469 ~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~  512 (562)
T 3a79_B          469 VTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNPWDCT  512 (562)
T ss_dssp             TTSSCCCSEEECCSSCCC-CCCTTSTTTCTTCCCEECCSCCBCCC
T ss_pred             hcCCCCCCEEECCCCCCC-CCCHHHHhcCCCCCEEEecCCCcCCC
Confidence            668888888888888888 45554 88888888888888888754

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=8.2e-40  Score=349.08  Aligned_cols=321  Identities=21%  Similarity=0.299  Sum_probs=227.8

Q ss_pred             CCCCCcEEEcccccccccCcccccccCCCCeeeccccc-ccc-ccccccc-------CCCCCcEEECCCCccCCcCCCCh
Q 046712          224 NLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINRNL-FSG-KVSINFS-------RLQNLSRLNLGENNLGTGTTNDL  294 (566)
Q Consensus       224 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~-~~~~~~~-------~~~~L~~L~l~~~~~~~~~~~~~  294 (566)
                      .+++|++|++++|.+.+..+..+.++++|+.|++++|. +++ ..+..+.       .+++|+.|++++|.+...+.   
T Consensus       489 ~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~---  565 (876)
T 4ecn_A          489 NLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPA---  565 (876)
T ss_dssp             GCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCC---
T ss_pred             cCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCC---
Confidence            56667777777666666666666667777777777765 554 3333332       34477777777777663221   


Q ss_pred             hhhhhccCCCCCCEEEccCCeeeeecchhHhhhccCCcEEEccCCCCCCCcchhhhccCC-CCeecccCCcccccccccc
Q 046712          295 DFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQISDTIPDVIANLVN-LNALGVESNQLAGTIPLAI  373 (566)
Q Consensus       295 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~-L~~L~l~~~~~~~~~~~~~  373 (566)
                        ...+..+++|+.|++++|.+. .+| .+.. .++|+.|++++|.+. .+|..+..+++ |++|++++|.++ ..|..+
T Consensus       566 --~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~-L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~  638 (876)
T 4ecn_A          566 --SASLQKMVKLGLLDCVHNKVR-HLE-AFGT-NVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIF  638 (876)
T ss_dssp             --HHHHTTCTTCCEEECTTSCCC-BCC-CCCT-TSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCC
T ss_pred             --hhhhhcCCCCCEEECCCCCcc-cch-hhcC-CCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhh
Confidence              014566777777777777766 444 3333 367777777777777 56666777777 888888888777 555655


Q ss_pred             cCCCC--CCEEEccCCcccccCCcc---cc--CCCCCCeEeccCccccccCCCCC-cCCCCCcEEEccCCcceeccchhh
Q 046712          374 GELKS--IQILFLNENFLRGTIPSS---LG--NLTLLTQLILEVNNLQGKIPPSN-GNCQNLILLTTRKNKLSGIVPRQL  445 (566)
Q Consensus       374 ~~~~~--L~~L~l~~n~~~~~~~~~---~~--~~~~L~~L~l~~~~l~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~  445 (566)
                      ...+.  |+.|++++|.+.+.++..   +.  .+++|+.|++++|.+. .+|..+ ..+++|+.|++++|.+. .+|..+
T Consensus       639 ~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~  716 (876)
T 4ecn_A          639 NAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMT-SIPENS  716 (876)
T ss_dssp             CTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCS-CCCTTS
T ss_pred             hccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCC-ccChHH
Confidence            55543  788888888776544321   11  3347788888888777 444433 36778888888888777 455544


Q ss_pred             hhhcc-------cceEEEccCCcccccCCcCcc--CCCCCCEEeCccccccccCCccccCCCCCcEEeCCC------Ccc
Q 046712          446 LRIIT-------LSVLLDLSDNLLSGHFPTKVG--NLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQD------NSF  510 (566)
Q Consensus       446 ~~~~~-------~l~~L~l~~~~~~~~~~~~~~--~~~~L~~L~ls~~~l~~~~~~~~~~~~~L~~L~L~~------n~~  510 (566)
                      +....       .++.|++++|.+. ..+..+.  .+++|+.|++++|++.+ +|..+..+++|++|+|++      |.+
T Consensus       717 ~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l  794 (876)
T 4ecn_A          717 LKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRI  794 (876)
T ss_dssp             SSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBC
T ss_pred             hccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccc
Confidence            44321       4588888888888 5666665  89999999999999995 788899999999999976      778


Q ss_pred             cccCCcCCcCCCCCCEEeCCCCccccccCccccccccCceeecccCcCccc
Q 046712          511 TISIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLLFLNMSYNHFEGK  561 (566)
Q Consensus       511 ~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~  561 (566)
                      .+.+|.++..+++|+.|+|++|++ +.+|..+.  ++|+.|+|++|++...
T Consensus       795 ~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i  842 (876)
T 4ecn_A          795 LRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISI  842 (876)
T ss_dssp             CCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEE
T ss_pred             cccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCcc
Confidence            888999999999999999999999 57888765  6999999999988654

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=1.9e-37  Score=315.06  Aligned_cols=369  Identities=18%  Similarity=0.200  Sum_probs=229.0

Q ss_pred             CcEEEEEcCCCccccccCccCcCCCCCCEEecCCCccccc-CCcccCCCCCCCEEeCCCCcCCCcCccccccCCCCcEEE
Q 046712           34 QRVTGLDLRHQSVGGVLSPFVGNLNFLRSINLPNNSFRGK-IPHEVGNLFRLQNLTLTNNYFLGKILTDLSHCSNLMKFE  112 (566)
Q Consensus        34 ~~~~~l~l~~~~i~~~~~~~~~~l~~L~~L~ls~~~l~~~-~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~  112 (566)
                      +++++|++++|.+++..+..|+++++|++|++++|.+.+. .+.+|.++++|++|++++|.+++..+..|.++++|++|+
T Consensus        30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  109 (455)
T 3v47_A           30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT  109 (455)
T ss_dssp             TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred             CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence            3455555555555555555555555555555555554422 234455555555555555555544455555555555555


Q ss_pred             cCCCcCCCCcchh--ccCCCCCCEEecccccCCCCCCcc-ccCCCCCCEEEccCCcCcccCCcccccCCcccEeeccccc
Q 046712          113 ASNNKLEGEIPVK--ISNLLMLQILNIAENHLKGQLPAS-IGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVAYNQ  189 (566)
Q Consensus       113 l~~~~~~~~~~~~--l~~l~~L~~L~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~  189 (566)
                      +++|.+++..+..  +.++++|++|++++|.+.+..|.. +..+++|++|++++|.+.+..+..+..+            
T Consensus       110 L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l------------  177 (455)
T 3v47_A          110 LTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNF------------  177 (455)
T ss_dssp             CTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGG------------
T ss_pred             CCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcc------------
Confidence            5555554323322  445555555555555555433433 4455555555555555544444444433            


Q ss_pred             ceecCCcccCcccCceEecccccccccCCCC-------CCCCCCCCcEEEcccccccccCccccccc---CCCCeeeccc
Q 046712          190 FSGMIPPIYNISSLQYIFIHTNRFHGSVPLD-------NGVNLPNLRYFSISGNNLTGSLQDSLSNA---TNLQGLEINR  259 (566)
Q Consensus       190 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~-------~~~~~~~L~~L~l~~~~~~~~~~~~l~~~---~~L~~L~l~~  259 (566)
                               ....++.++++++.+.+..+..       ....+++|++|++++|.+.+..+..+...   ++|+.+++++
T Consensus       178 ---------~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~  248 (455)
T 3v47_A          178 ---------QGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSN  248 (455)
T ss_dssp             ---------TTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTT
T ss_pred             ---------ccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeecc
Confidence                     1134444444444443211111       01145678888888887776555544433   6777787777


Q ss_pred             ccccccccccccCCCCCcEEECCCCccCCcCCCChhhhhhccCCCCCCEEEccCCeeeeecchhHhhhccCCcEEEccCC
Q 046712          260 NLFSGKVSINFSRLQNLSRLNLGENNLGTGTTNDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSN  339 (566)
Q Consensus       260 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~  339 (566)
                      +.......              ..+.+.......+    .-...++|+.|++++|.+.+..+..+... ++|++|++++|
T Consensus       249 ~~~~~~~~--------------~~~~~~~~~~~~~----~~~~~~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~Ls~n  309 (455)
T 3v47_A          249 SYNMGSSF--------------GHTNFKDPDNFTF----KGLEASGVKTCDLSKSKIFALLKSVFSHF-TDLEQLTLAQN  309 (455)
T ss_dssp             CTTTSCCT--------------TCCSSCCCCTTTT----GGGTTSCCCEEECCSSCCCEECTTTTTTC-TTCCEEECTTS
T ss_pred             cccccccc--------------chhhhccCccccc----ccccccCceEEEecCccccccchhhcccC-CCCCEEECCCC
Confidence            65432111              0011111111000    01134678888888888887766666554 78888888888


Q ss_pred             CCCCCcchhhhccCCCCeecccCCcccccccccccCCCCCCEEEccCCcccccCCccccCCCCCCeEeccCccccccCCC
Q 046712          340 QISDTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSIQILFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPP  419 (566)
Q Consensus       340 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~  419 (566)
                      .+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|++++|++.+..+.
T Consensus       310 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~  389 (455)
T 3v47_A          310 EINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDG  389 (455)
T ss_dssp             CCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred             cccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHh
Confidence            88877777888899999999999999877788889999999999999999877788899999999999999999876666


Q ss_pred             CCcCCCCCcEEEccCCcceeccc
Q 046712          420 SNGNCQNLILLTTRKNKLSGIVP  442 (566)
Q Consensus       420 ~~~~~~~L~~L~l~~~~~~~~~~  442 (566)
                      .+..+++|++|++++|++.+..|
T Consensus       390 ~~~~l~~L~~L~l~~N~l~~~~~  412 (455)
T 3v47_A          390 IFDRLTSLQKIWLHTNPWDCSCP  412 (455)
T ss_dssp             TTTTCTTCCEEECCSSCBCCCTT
T ss_pred             HhccCCcccEEEccCCCcccCCC
Confidence            77899999999999999887655

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=7.6e-37  Score=310.56  Aligned_cols=372  Identities=18%  Similarity=0.193  Sum_probs=204.2

Q ss_pred             CEEecccccCCCCCCccccCCCCCCEEEccCCcCcccCCcccccCCcccEeecccccceecC-C-cccCcccCceEeccc
Q 046712          133 QILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVAYNQFSGMI-P-PIYNISSLQYIFIHT  210 (566)
Q Consensus       133 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~-~-~l~~~~~L~~L~l~~  210 (566)
                      +.++.+++.+. .+|. +  .++|++|++++|.+++..|..+..+++|++|++++|.+.... + .+..+++|++|++++
T Consensus        13 ~~~~c~~~~l~-~lp~-l--~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~   88 (455)
T 3v47_A           13 YNAICINRGLH-QVPE-L--PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDY   88 (455)
T ss_dssp             TEEECCSSCCS-SCCC-C--CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTT
T ss_pred             cccCcCCCCcc-cCCC-C--CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCC
Confidence            45666666666 5565 2  367888888888888767778888888888888887664222 2 445555555555555


Q ss_pred             ccccccCCCCCCCCCCCCcEEEcccccccccCcc--cccccCCCCeeecccccccccccccccCCCCCcEEECCCCccCC
Q 046712          211 NRFHGSVPLDNGVNLPNLRYFSISGNNLTGSLQD--SLSNATNLQGLEINRNLFSGKVSINFSRLQNLSRLNLGENNLGT  288 (566)
Q Consensus       211 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~--~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  288 (566)
                      |.+.+..+..+. .+++|++|++++|.+++..+.  .+..+++|++|++++|.+....+..                   
T Consensus        89 n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-------------------  148 (455)
T 3v47_A           89 NQFLQLETGAFN-GLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPAS-------------------  148 (455)
T ss_dssp             CTTCEECTTTTT-TCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCG-------------------
T ss_pred             CccCccChhhcc-CcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCccc-------------------
Confidence            555433333322 455555555555554432211  2444445555555554444333322                   


Q ss_pred             cCCCChhhhhhccCCCCCCEEEccCCeeeeecchhHhhh-ccCCcEEEccCCCCCCCcchh--------hhccCCCCeec
Q 046712          289 GTTNDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANL-STTMTEIAIGSNQISDTIPDV--------IANLVNLNALG  359 (566)
Q Consensus       289 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~--------~~~l~~L~~L~  359 (566)
                                .+..+++|+.|++++|.+.+..+..+... ...++.+++++|.+.+..+..        +..+++|++|+
T Consensus       149 ----------~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~  218 (455)
T 3v47_A          149 ----------FFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLD  218 (455)
T ss_dssp             ----------GGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEE
T ss_pred             ----------ccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEe
Confidence                      13344444444444444444333333222 134555555555544332221        22446677777


Q ss_pred             ccCCcccccccccccC---CCCCCEEEccCCcccccC----------Ccccc--CCCCCCeEeccCccccccCCCCCcCC
Q 046712          360 VESNQLAGTIPLAIGE---LKSIQILFLNENFLRGTI----------PSSLG--NLTLLTQLILEVNNLQGKIPPSNGNC  424 (566)
Q Consensus       360 l~~~~~~~~~~~~~~~---~~~L~~L~l~~n~~~~~~----------~~~~~--~~~~L~~L~l~~~~l~~~~~~~~~~~  424 (566)
                      +++|.+.+..+..+..   .++|+.|++++|...+..          ...+.  ..++|+.|++++|.+.+..+..+..+
T Consensus       219 Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l  298 (455)
T 3v47_A          219 LSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHF  298 (455)
T ss_dssp             CTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTC
T ss_pred             cCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccC
Confidence            7777766555544433   266777777766543211          00111  12345555555555554445555555


Q ss_pred             CCCcEEEccCCcceeccchhhhhhcccceEEEccCCcccccCCcCccCCCCCCEEeCccccccccCCccccCCCCCcEEe
Q 046712          425 QNLILLTTRKNKLSGIVPRQLLRIITLSVLLDLSDNLLSGHFPTKVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLG  504 (566)
Q Consensus       425 ~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~l~~~~~~~~~~~~~L~~L~  504 (566)
                      ++|++|++++|.                         +.+..+..|..+++|++|++++|.+.+..+..+..+++|++|+
T Consensus       299 ~~L~~L~Ls~n~-------------------------l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  353 (455)
T 3v47_A          299 TDLEQLTLAQNE-------------------------INKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLD  353 (455)
T ss_dssp             TTCCEEECTTSC-------------------------CCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEE
T ss_pred             CCCCEEECCCCc-------------------------ccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEE
Confidence            555555555554                         4444445555666666666666666655555566666666666


Q ss_pred             CCCCcccccCCcCCcCCCCCCEEeCCCCccccccCccccccccCceeecccCcCcccCC
Q 046712          505 MQDNSFTISIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLLFLNMSYNHFEGKVP  563 (566)
Q Consensus       505 L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p  563 (566)
                      +++|.+++..|+++..+++|++|++++|++++..++.+..+++|+.|++++|++++..|
T Consensus       354 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~  412 (455)
T 3v47_A          354 LSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  412 (455)
T ss_dssp             CCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred             CCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence            66666665556666666666666666666665555555666666666666666666655

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=2.3e-37  Score=311.13  Aligned_cols=407  Identities=20%  Similarity=0.230  Sum_probs=174.7

Q ss_pred             CcEEEEEcCCCccccccCccCcCCCCCCEEecCCCcccccCCcccCCCCCCCEEeCCCCcCCCcCccccccCCCCcEEEc
Q 046712           34 QRVTGLDLRHQSVGGVLSPFVGNLNFLRSINLPNNSFRGKIPHEVGNLFRLQNLTLTNNYFLGKILTDLSHCSNLMKFEA  113 (566)
Q Consensus        34 ~~~~~l~l~~~~i~~~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l  113 (566)
                      ..+++++++++.+ +.+|..++++++|++|++++|.+.+.+|.+++++++|+.+++++|..           .++++|++
T Consensus        11 ~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~-----------~~l~~L~l   78 (454)
T 1jl5_A           11 TFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLD-----------RQAHELEL   78 (454)
T ss_dssp             ------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHH-----------HTCSEEEC
T ss_pred             ccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhc-----------cCCCEEEe
Confidence            3445555555555 34455555555555555555555545555555555544444443321           23556666


Q ss_pred             CCCcCCCCcchhccCCCCCCEEecccccCCCCCCccccCCCCCCEEEccCCcCcccCCcccccCCcccEeecccccceec
Q 046712          114 SNNKLEGEIPVKISNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVAYNQFSGM  193 (566)
Q Consensus       114 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~  193 (566)
                      ++|.+++ +|.   -.++|++|++++|.+.+ +|..   .++|++|++++|.+++ ++.    .                
T Consensus        79 ~~~~l~~-lp~---~~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~-l~~----~----------------  129 (454)
T 1jl5_A           79 NNLGLSS-LPE---LPPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKA-LSD----L----------------  129 (454)
T ss_dssp             TTSCCSC-CCS---CCTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSC-CCS----C----------------
T ss_pred             cCCcccc-CCC---CcCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCc-ccC----C----------------
Confidence            6665552 222   12455555555555553 3322   2455555555554431 111    0                


Q ss_pred             CCcccCcccCceEecccccccccCCCCCCCCCCCCcEEEcccccccccCcccccccCCCCeeecccccccccccccccCC
Q 046712          194 IPPIYNISSLQYIFIHTNRFHGSVPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINRNLFSGKVSINFSRL  273 (566)
Q Consensus       194 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~  273 (566)
                            .++|++|++++|.+.+ +| . +..+++|++|++++|.+++ .+..   .++|++|++++|.+... + .+..+
T Consensus       130 ------~~~L~~L~L~~n~l~~-lp-~-~~~l~~L~~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~~l-~-~~~~l  194 (454)
T 1jl5_A          130 ------PPLLEYLGVSNNQLEK-LP-E-LQNSSFLKIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLEEL-P-ELQNL  194 (454)
T ss_dssp             ------CTTCCEEECCSSCCSS-CC-C-CTTCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSSC-C-CCTTC
T ss_pred             ------CCCCCEEECcCCCCCC-Cc-c-cCCCCCCCEEECCCCcCcc-cCCC---cccccEEECcCCcCCcC-c-cccCC
Confidence                  0344444444444442 33 1 2356666666666666553 2221   23666666666666542 2 35555


Q ss_pred             CCCcEEECCCCccCCcCCCChhhhhhccCCCCCCEEEccCCeeeeecchhHhhhccCCcEEEccCCCCCCCcchhhhccC
Q 046712          274 QNLSRLNLGENNLGTGTTNDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQISDTIPDVIANLV  353 (566)
Q Consensus       274 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~  353 (566)
                      ++|+.|++++|.+...+.          ..++|+.|+++                         +|.+. .+|. +..++
T Consensus       195 ~~L~~L~l~~N~l~~l~~----------~~~~L~~L~l~-------------------------~n~l~-~lp~-~~~l~  237 (454)
T 1jl5_A          195 PFLTAIYADNNSLKKLPD----------LPLSLESIVAG-------------------------NNILE-ELPE-LQNLP  237 (454)
T ss_dssp             TTCCEEECCSSCCSSCCC----------CCTTCCEEECC-------------------------SSCCS-SCCC-CTTCT
T ss_pred             CCCCEEECCCCcCCcCCC----------CcCcccEEECc-------------------------CCcCC-cccc-cCCCC
Confidence            666666666655543221          11344444444                         44444 2332 44555


Q ss_pred             CCCeecccCCcccccccccccCCCCCCEEEccCCcccccCCccccCCCCCCeEeccCccccccCCCCCcCCCCCcEEEcc
Q 046712          354 NLNALGVESNQLAGTIPLAIGELKSIQILFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSNGNCQNLILLTTR  433 (566)
Q Consensus       354 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~  433 (566)
                      +|++|++++|++++ .+.   ..++|++|++++|.+++ ++..   +++|++|++++|.+.+. +.   ..++|++|+++
T Consensus       238 ~L~~L~l~~N~l~~-l~~---~~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~l-~~---~~~~L~~L~l~  305 (454)
T 1jl5_A          238 FLTTIYADNNLLKT-LPD---LPPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFSGL-SE---LPPNLYYLNAS  305 (454)
T ss_dssp             TCCEEECCSSCCSS-CCS---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSEE-SC---CCTTCCEEECC
T ss_pred             CCCEEECCCCcCCc-ccc---cccccCEEECCCCcccc-cCcc---cCcCCEEECcCCccCcc-cC---cCCcCCEEECc
Confidence            56666666655553 222   12456666666665552 2321   24566666666655531 11   11456666666


Q ss_pred             CCcceeccchhhhhhcccceEEEccCCcccccCCcCccCCCCCCEEeCccccccccCCccccCCCCCcEEeCCCCcccc-
Q 046712          434 KNKLSGIVPRQLLRIITLSVLLDLSDNLLSGHFPTKVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTI-  512 (566)
Q Consensus       434 ~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~~~~-  512 (566)
                      +|.+.+.     ...+..++.|++++|.+.+ .+.   .+++|+.|++++|.+. .+|.   .+++|++|++++|.+++ 
T Consensus       306 ~N~l~~i-----~~~~~~L~~L~Ls~N~l~~-lp~---~~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~~N~l~~l  372 (454)
T 1jl5_A          306 SNEIRSL-----CDLPPSLEELNVSNNKLIE-LPA---LPPRLERLIASFNHLA-EVPE---LPQNLKQLHVEYNPLREF  372 (454)
T ss_dssp             SSCCSEE-----CCCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSSC
T ss_pred             CCcCCcc-----cCCcCcCCEEECCCCcccc-ccc---cCCcCCEEECCCCccc-cccc---hhhhccEEECCCCCCCcC
Confidence            6655531     1222344666666666654 222   2466777777777766 4444   35677777777777765 


Q ss_pred             -cCCcCCcCC-------------CCCCEEeCCCCcccc--ccCccccccccCceeecccCcCcccCCC
Q 046712          513 -SIPSTLSSL-------------KSITELDLSRNNLSG--HIPQYLENLSFLLFLNMSYNHFEGKVPI  564 (566)
Q Consensus       513 -~~~~~l~~l-------------~~L~~L~l~~n~~~~--~~~~~l~~l~~L~~L~l~~n~~~~~~p~  564 (566)
                       .+|.++..+             ++|+.|++++|++++  .+|.      +|+.|.+.+|.+.+.+|.
T Consensus       373 ~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~~iP~------sl~~L~~~~~~~~~~~~~  434 (454)
T 1jl5_A          373 PDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDIPE------SVEDLRMNSERVVDPYEF  434 (454)
T ss_dssp             CCCCTTCCEEECCC------------------------------------------------------
T ss_pred             CCChHHHHhhhhcccccccccccCcCCEEECCCCcCCccccchh------hHhheeCcCcccCCcccc
Confidence             456666555             788999999998885  4443      456677888888777663

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=100.00  E-value=1.9e-36  Score=290.17  Aligned_cols=280  Identities=26%  Similarity=0.412  Sum_probs=241.4

Q ss_pred             CcccCCCCCCCCCCCcCCCCCCc--ccccccCCCC--CcEEEEEcCCCcccc--ccCccCcCCCCCCEEecCC-Cccccc
Q 046712            1 MKSQLQDPLGVTSSWNNSINLCQ--WTGVTCGHRR--QRVTGLDLRHQSVGG--VLSPFVGNLNFLRSINLPN-NSFRGK   73 (566)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~--~~~~~l~l~~~~i~~--~~~~~~~~l~~L~~L~ls~-~~l~~~   73 (566)
                      ||+++.||. ++++|..+++||.  |.||.|....  .+|++|+++++.+++  .+|..|.++++|++|++++ |.+.+.
T Consensus        14 ~k~~~~~~~-~l~~W~~~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~   92 (313)
T 1ogq_A           14 IKKDLGNPT-TLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGP   92 (313)
T ss_dssp             HHHHTTCCG-GGTTCCTTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESC
T ss_pred             HHHhcCCcc-cccCCCCCCCCCcCCCcceEeCCCCCCceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCccccc
Confidence            567788887 8999999889998  9999998665  799999999999998  8899999999999999995 899888


Q ss_pred             CCcccCCCCCCCEEeCCCCcCCCcCccccccCCCCcEEEcCCCcCCCCcchhccCCCCCCEEecccccCCCCCCccccCC
Q 046712           74 IPHEVGNLFRLQNLTLTNNYFLGKILTDLSHCSNLMKFEASNNKLEGEIPVKISNLLMLQILNIAENHLKGQLPASIGNL  153 (566)
Q Consensus        74 ~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l  153 (566)
                      +|.+|.++++|++|++++|.+++..+..|.++++|++|++++|.+++.+|..+..+++|++|++++|.+.+.+|..+..+
T Consensus        93 ~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l  172 (313)
T 1ogq_A           93 IPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSF  172 (313)
T ss_dssp             CCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCC
T ss_pred             CChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhh
Confidence            99999999999999999999988889999999999999999999998889999999999999999999988899999999


Q ss_pred             C-CCCEEEccCCcCcccCCcccccCCcccEeecccccceecCC-cccCcccCceEecccccccccCCCCCCCCCCCCcEE
Q 046712          154 S-ALQEIDVRGNRLGGRIPSTISHVRNLISFNVAYNQFSGMIP-PIYNISSLQYIFIHTNRFHGSVPLDNGVNLPNLRYF  231 (566)
Q Consensus       154 ~-~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L  231 (566)
                      + +|++|++++|.+.+..|..+..++ |+.|++++|.+.+..+ .+..+++|+.|++++|.+.+.++.  ...+++|++|
T Consensus       173 ~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~--~~~l~~L~~L  249 (313)
T 1ogq_A          173 SKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK--VGLSKNLNGL  249 (313)
T ss_dssp             CTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG--CCCCTTCCEE
T ss_pred             hhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc--ccccCCCCEE
Confidence            8 999999999999988999998887 9999999999887666 667788888888888887755544  2357788888


Q ss_pred             EcccccccccCcccccccCCCCeeecccccccccccccccCCCCCcEEECCCCc
Q 046712          232 SISGNNLTGSLQDSLSNATNLQGLEINRNLFSGKVSINFSRLQNLSRLNLGENN  285 (566)
Q Consensus       232 ~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~  285 (566)
                      ++++|.+.+..+..+..+++|+.|++++|.+++..+.. ..+++|+.+++.+|+
T Consensus       250 ~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~  302 (313)
T 1ogq_A          250 DLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNK  302 (313)
T ss_dssp             ECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSS
T ss_pred             ECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCC
Confidence            88888777677777777778888888887777555543 566677777777665

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=2.9e-35  Score=295.87  Aligned_cols=389  Identities=21%  Similarity=0.275  Sum_probs=243.6

Q ss_pred             CCCCcEEEcCCCcCCCCcchhccCCCCCCEEecccccCCCCCCccccCCCCCCEEEccCCcCcccCCcccccCCcccEee
Q 046712          105 CSNLMKFEASNNKLEGEIPVKISNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFN  184 (566)
Q Consensus       105 l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~  184 (566)
                      ..+|++|++++|.+ +.+|..++++++|++|++++|.+.+.+|..++.+.+|+.+++.+|..           .+++.|+
T Consensus        10 ~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~-----------~~l~~L~   77 (454)
T 1jl5_A           10 NTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLD-----------RQAHELE   77 (454)
T ss_dssp             -------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHH-----------HTCSEEE
T ss_pred             cccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhc-----------cCCCEEE
Confidence            46777777777777 46777777777777777777777767777777776653333332210           2345555


Q ss_pred             cccccceecCCcccCcccCceEecccccccccCCCCCCCCCCCCcEEEcccccccccCcccccccCCCCeeecccccccc
Q 046712          185 VAYNQFSGMIPPIYNISSLQYIFIHTNRFHGSVPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINRNLFSG  264 (566)
Q Consensus       185 l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~  264 (566)
                      +++|.+.+.+.   ..++|++|++++|.+++ +|.    .+++|++|++++|.+++...    ..++|++|++++|.+.+
T Consensus        78 l~~~~l~~lp~---~~~~L~~L~l~~n~l~~-lp~----~~~~L~~L~l~~n~l~~l~~----~~~~L~~L~L~~n~l~~  145 (454)
T 1jl5_A           78 LNNLGLSSLPE---LPPHLESLVASCNSLTE-LPE----LPQSLKSLLVDNNNLKALSD----LPPLLEYLGVSNNQLEK  145 (454)
T ss_dssp             CTTSCCSCCCS---CCTTCSEEECCSSCCSS-CCC----CCTTCCEEECCSSCCSCCCS----CCTTCCEEECCSSCCSS
T ss_pred             ecCCccccCCC---CcCCCCEEEccCCcCCc-ccc----ccCCCcEEECCCCccCcccC----CCCCCCEEECcCCCCCC
Confidence            55555544332   12456666666666653 432    23667777777776653211    11567777777777765


Q ss_pred             cccccccCCCCCcEEECCCCccCCcCCCChhhhhhccCCCCCCEEEccCCeeeeecchhHhhhccCCcEEEccCCCCCCC
Q 046712          265 KVSINFSRLQNLSRLNLGENNLGTGTTNDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQISDT  344 (566)
Q Consensus       265 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  344 (566)
                       .+ .+..+++|++|++++|.+...+.          ..++|+.|++++|.+.+ .| .+.. .+.|++|++++|.+.+ 
T Consensus       146 -lp-~~~~l~~L~~L~l~~N~l~~lp~----------~~~~L~~L~L~~n~l~~-l~-~~~~-l~~L~~L~l~~N~l~~-  209 (454)
T 1jl5_A          146 -LP-ELQNSSFLKIIDVDNNSLKKLPD----------LPPSLEFIAAGNNQLEE-LP-ELQN-LPFLTAIYADNNSLKK-  209 (454)
T ss_dssp             -CC-CCTTCTTCCEEECCSSCCSCCCC----------CCTTCCEEECCSSCCSS-CC-CCTT-CTTCCEEECCSSCCSS-
T ss_pred             -Cc-ccCCCCCCCEEECCCCcCcccCC----------CcccccEEECcCCcCCc-Cc-cccC-CCCCCEEECCCCcCCc-
Confidence             33 47777777777777777665332          12478888888887775 33 2333 3778888888888775 


Q ss_pred             cchhhhccCCCCeecccCCcccccccccccCCCCCCEEEccCCcccccCCccccCCCCCCeEeccCccccccCCCCCcCC
Q 046712          345 IPDVIANLVNLNALGVESNQLAGTIPLAIGELKSIQILFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSNGNC  424 (566)
Q Consensus       345 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~  424 (566)
                      +|..   .++|++|++++|.+. ..| .+..+++|++|++++|.+++ ++.   .+++|++|++++|++.+ +|..   .
T Consensus       210 l~~~---~~~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~-l~~---~~~~L~~L~l~~N~l~~-l~~~---~  276 (454)
T 1jl5_A          210 LPDL---PLSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKT-LPD---LPPSLEALNVRDNYLTD-LPEL---P  276 (454)
T ss_dssp             CCCC---CTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSS-CCS---CCTTCCEEECCSSCCSC-CCCC---C
T ss_pred             CCCC---cCcccEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcCCc-ccc---cccccCEEECCCCcccc-cCcc---c
Confidence            3332   268999999999998 555 48899999999999999984 443   24799999999999885 4443   4


Q ss_pred             CCCcEEEccCCcceeccchhhhhhcccceEEEccCCcccccCCcCccCC-CCCCEEeCccccccccCCccccCCCCCcEE
Q 046712          425 QNLILLTTRKNKLSGIVPRQLLRIITLSVLLDLSDNLLSGHFPTKVGNL-KNLVSLDISSNMFSGEIPTTLGGCTSLEYL  503 (566)
Q Consensus       425 ~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~-~~L~~L~ls~~~l~~~~~~~~~~~~~L~~L  503 (566)
                      ++|++|++++|.+.+..     ..++.++.|++++|.+.+..     .+ ++|+.|++++|++.+ +|..   +++|++|
T Consensus       277 ~~L~~L~ls~N~l~~l~-----~~~~~L~~L~l~~N~l~~i~-----~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L  342 (454)
T 1jl5_A          277 QSLTFLDVSENIFSGLS-----ELPPNLYYLNASSNEIRSLC-----DLPPSLEELNVSNNKLIE-LPAL---PPRLERL  342 (454)
T ss_dssp             TTCCEEECCSSCCSEES-----CCCTTCCEEECCSSCCSEEC-----CCCTTCCEEECCSSCCSC-CCCC---CTTCCEE
T ss_pred             CcCCEEECcCCccCccc-----CcCCcCCEEECcCCcCCccc-----CCcCcCCEEECCCCcccc-cccc---CCcCCEE
Confidence            89999999999988631     22355699999999998532     33 589999999999984 5554   5899999


Q ss_pred             eCCCCcccccCCcCCcCCCCCCEEeCCCCcccc--ccCcccccc-------------ccCceeecccCcCcc--cCCC
Q 046712          504 GMQDNSFTISIPSTLSSLKSITELDLSRNNLSG--HIPQYLENL-------------SFLLFLNMSYNHFEG--KVPI  564 (566)
Q Consensus       504 ~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~--~~~~~l~~l-------------~~L~~L~l~~n~~~~--~~p~  564 (566)
                      ++++|.++ .+|.   .+++|++|++++|++++  .+|..+..+             ++|+.|++++|++++  .+|.
T Consensus       343 ~L~~N~l~-~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~~iP~  416 (454)
T 1jl5_A          343 IASFNHLA-EVPE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDIPE  416 (454)
T ss_dssp             ECCSSCCS-CCCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC------------------------------
T ss_pred             ECCCCccc-cccc---hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCccccchh
Confidence            99999998 5666   47999999999999998  788888888             889999999999998  8885

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=3.6e-34  Score=288.12  Aligned_cols=214  Identities=22%  Similarity=0.229  Sum_probs=130.0

Q ss_pred             ccCccCcCCCCCCEEecCCCcccccCCcccCCCCCCCEEeCCCCcCCCcCccccccCCCCcEEEcCCCcCCCCcchhccC
Q 046712           49 VLSPFVGNLNFLRSINLPNNSFRGKIPHEVGNLFRLQNLTLTNNYFLGKILTDLSHCSNLMKFEASNNKLEGEIPVKISN  128 (566)
Q Consensus        49 ~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~  128 (566)
                      ..+..++++++|++|++++|.+++ +| ++..+++|++|++++|.+++.   .+..+++|++|++++|.+++. +  +++
T Consensus        33 ~~~~~~~~l~~L~~L~Ls~n~l~~-~~-~l~~l~~L~~L~Ls~n~l~~~---~~~~l~~L~~L~Ls~N~l~~~-~--~~~  104 (457)
T 3bz5_A           33 TDTISEEQLATLTSLDCHNSSITD-MT-GIEKLTGLTKLICTSNNITTL---DLSQNTNLTYLACDSNKLTNL-D--VTP  104 (457)
T ss_dssp             TSEEEHHHHTTCCEEECCSSCCCC-CT-TGGGCTTCSEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSCC-C--CTT
T ss_pred             ccccChhHcCCCCEEEccCCCccc-Ch-hhcccCCCCEEEccCCcCCeE---ccccCCCCCEEECcCCCCcee-e--cCC
Confidence            334456777888888888887774 34 577778888888888877654   267778888888888877743 3  677


Q ss_pred             CCCCCEEecccccCCCCCCccccCCCCCCEEEccCCcCcccCCcccccCCcccEeecccccceecCCcccCcccCceEec
Q 046712          129 LLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVAYNQFSGMIPPIYNISSLQYIFI  208 (566)
Q Consensus       129 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l  208 (566)
                      +++|++|++++|.+.+ ++  ++.+++|++|++++|.+++.   .++.+++|+.|++++|...+.. .+..+++|++|++
T Consensus       105 l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~-~~~~l~~L~~L~l  177 (457)
T 3bz5_A          105 LTKLTYLNCDTNKLTK-LD--VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL-DVTPQTQLTTLDC  177 (457)
T ss_dssp             CTTCCEEECCSSCCSC-CC--CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC-CCTTCTTCCEEEC
T ss_pred             CCcCCEEECCCCcCCe-ec--CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc-ccccCCcCCEEEC
Confidence            7788888888877774 33  67777788888877777642   2566677777777666432222 2334444444444


Q ss_pred             ccccccccCCCCCCCCCCCCcEEEcccccccccCcccccccCCCCeeecccccccccccccccCCCCCcEEECCCCccCC
Q 046712          209 HTNRFHGSVPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINRNLFSGKVSINFSRLQNLSRLNLGENNLGT  288 (566)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  288 (566)
                      ++|.+++ ++                           +..+++|+.|++++|.++..   .+..+++|+.|++++|.+..
T Consensus       178 s~n~l~~-l~---------------------------l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~  226 (457)
T 3bz5_A          178 SFNKITE-LD---------------------------VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE  226 (457)
T ss_dssp             CSSCCCC-CC---------------------------CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC
T ss_pred             CCCccce-ec---------------------------cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc
Confidence            4444432 22                           33444455555555444432   24445555555555555544


Q ss_pred             cCCCChhhhhhccCCCCCCEEEccCCeee
Q 046712          289 GTTNDLDFITLLTNCTKLEVLDLHSNRFG  317 (566)
Q Consensus       289 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~  317 (566)
                      .+         +..+++|+.|++++|.+.
T Consensus       227 ip---------~~~l~~L~~L~l~~N~l~  246 (457)
T 3bz5_A          227 ID---------VTPLTQLTYFDCSVNPLT  246 (457)
T ss_dssp             CC---------CTTCTTCSEEECCSSCCS
T ss_pred             cC---------ccccCCCCEEEeeCCcCC
Confidence            21         234455555555555554

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=1.9e-33  Score=285.62  Aligned_cols=344  Identities=26%  Similarity=0.379  Sum_probs=177.3

Q ss_pred             CcEEEEEcCCCccccccCccCcCCCCCCEEecCCCcccccCCcccCCCCCCCEEeCCCCcCCCcCccccccCCCCcEEEc
Q 046712           34 QRVTGLDLRHQSVGGVLSPFVGNLNFLRSINLPNNSFRGKIPHEVGNLFRLQNLTLTNNYFLGKILTDLSHCSNLMKFEA  113 (566)
Q Consensus        34 ~~~~~l~l~~~~i~~~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l  113 (566)
                      .+++.|+++++.+... + .+..+++|++|++++|.+++. +. +.++++|++|++++|.+.+..+  +.++++|++|++
T Consensus        46 ~~l~~L~l~~~~i~~l-~-~~~~l~~L~~L~Ls~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L  119 (466)
T 1o6v_A           46 DQVTTLQADRLGIKSI-D-GVEYLNNLTQINFSNNQLTDI-TP-LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTL  119 (466)
T ss_dssp             HTCCEEECCSSCCCCC-T-TGGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEEC
T ss_pred             ccccEEecCCCCCccC-c-chhhhcCCCEEECCCCccCCc-hh-hhccccCCEEECCCCccccChh--hcCCCCCCEEEC
Confidence            4556666666665532 2 255666666666666666532 22 5666666666666666554333  556666666666


Q ss_pred             CCCcCCCCcchhccCCCCCCEEecccccCCCCCCccccCCCCCCEEEccCCcCcccCCcccccCCcccEeecccccceec
Q 046712          114 SNNKLEGEIPVKISNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVAYNQFSGM  193 (566)
Q Consensus       114 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~  193 (566)
                      ++|.+++..+  +.++++|++|++++|.+.+ ++ .+..+++|++|++++ .+...  ..+..+++|+.|++++|.+...
T Consensus       120 ~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~~-~~~~l~~L~~L~l~~-~~~~~--~~~~~l~~L~~L~l~~n~l~~~  192 (466)
T 1o6v_A          120 FNNQITDIDP--LKNLTNLNRLELSSNTISD-IS-ALSGLTSLQQLSFGN-QVTDL--KPLANLTTLERLDISSNKVSDI  192 (466)
T ss_dssp             CSSCCCCCGG--GTTCTTCSEEEEEEEEECC-CG-GGTTCTTCSEEEEEE-SCCCC--GGGTTCTTCCEEECCSSCCCCC
T ss_pred             CCCCCCCChH--HcCCCCCCEEECCCCccCC-Ch-hhccCCcccEeecCC-cccCc--hhhccCCCCCEEECcCCcCCCC
Confidence            6666653322  5566666666666666552 22 355666666666643 22211  2255556666666666554432


Q ss_pred             CCcccCcccCceEecccccccccCCCCCCCCCCCCcEEEcccccccccCcccccccCCCCeeecccccccccccccccCC
Q 046712          194 IPPIYNISSLQYIFIHTNRFHGSVPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINRNLFSGKVSINFSRL  273 (566)
Q Consensus       194 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~  273 (566)
                       +.+..+++|++|++++|.+.+..+                           +..+++|+.|++++|.+...  ..+..+
T Consensus       193 -~~l~~l~~L~~L~l~~n~l~~~~~---------------------------~~~l~~L~~L~l~~n~l~~~--~~l~~l  242 (466)
T 1o6v_A          193 -SVLAKLTNLESLIATNNQISDITP---------------------------LGILTNLDELSLNGNQLKDI--GTLASL  242 (466)
T ss_dssp             -GGGGGCTTCSEEECCSSCCCCCGG---------------------------GGGCTTCCEEECCSSCCCCC--GGGGGC
T ss_pred             -hhhccCCCCCEEEecCCccccccc---------------------------ccccCCCCEEECCCCCcccc--hhhhcC
Confidence             234444555555555554443222                           33444444444444444322  123444


Q ss_pred             CCCcEEECCCCccCCcCCCChhhhhhccCCCCCCEEEccCCeeeeecchhHhhhccCCcEEEccCCCCCCCcchhhhccC
Q 046712          274 QNLSRLNLGENNLGTGTTNDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQISDTIPDVIANLV  353 (566)
Q Consensus       274 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~  353 (566)
                      ++|+.|++++|.+....+        +..+++|+.|++++|.+.+..+  +. ..+.|+.|++++|.+.+..+  +..++
T Consensus       243 ~~L~~L~l~~n~l~~~~~--------~~~l~~L~~L~l~~n~l~~~~~--~~-~l~~L~~L~L~~n~l~~~~~--~~~l~  309 (466)
T 1o6v_A          243 TNLTDLDLANNQISNLAP--------LSGLTKLTELKLGANQISNISP--LA-GLTALTNLELNENQLEDISP--ISNLK  309 (466)
T ss_dssp             TTCSEEECCSSCCCCCGG--------GTTCTTCSEEECCSSCCCCCGG--GT-TCTTCSEEECCSSCCSCCGG--GGGCT
T ss_pred             CCCCEEECCCCccccchh--------hhcCCCCCEEECCCCccCcccc--cc-CCCccCeEEcCCCcccCchh--hcCCC
Confidence            555555555554433211        3444555555555555443322  11 22455555555555543322  45555


Q ss_pred             CCCeecccCCcccccccccccCCCCCCEEEccCCcccccCCccccCCCCCCeEeccCccccccCCCCCcCCCCCcEEEcc
Q 046712          354 NLNALGVESNQLAGTIPLAIGELKSIQILFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSNGNCQNLILLTTR  433 (566)
Q Consensus       354 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~  433 (566)
                      +|++|++++|.+++..+  +..+++|++|++++|.+++.  ..+..+++|+.|++++|++.+..|  +..+++|+.|+++
T Consensus       310 ~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~  383 (466)
T 1o6v_A          310 NLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLN  383 (466)
T ss_dssp             TCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECC
T ss_pred             CCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEecc
Confidence            66666666665554433  44555666666666655532  345555666666666666554443  5555666666666


Q ss_pred             CCccee
Q 046712          434 KNKLSG  439 (566)
Q Consensus       434 ~~~~~~  439 (566)
                      +|.+.+
T Consensus       384 ~n~~~~  389 (466)
T 1o6v_A          384 DQAWTN  389 (466)
T ss_dssp             CEEEEC
T ss_pred             CCcccC
Confidence            665553

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=2.9e-33  Score=284.22  Aligned_cols=348  Identities=27%  Similarity=0.390  Sum_probs=261.6

Q ss_pred             cCCCCCCEEecCCCcccccCCcccCCCCCCCEEeCCCCcCCCcCccccccCCCCcEEEcCCCcCCCCcchhccCCCCCCE
Q 046712           55 GNLNFLRSINLPNNSFRGKIPHEVGNLFRLQNLTLTNNYFLGKILTDLSHCSNLMKFEASNNKLEGEIPVKISNLLMLQI  134 (566)
Q Consensus        55 ~~l~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~  134 (566)
                      ..+++++.|+++++.+. .+| .+..+++|++|++++|.+++..+  +.++++|++|++++|.+.+..+  +.++++|++
T Consensus        43 ~~l~~l~~L~l~~~~i~-~l~-~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~  116 (466)
T 1o6v_A           43 TDLDQVTTLQADRLGIK-SID-GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTG  116 (466)
T ss_dssp             HHHHTCCEEECCSSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCE
T ss_pred             hHhccccEEecCCCCCc-cCc-chhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCE
Confidence            34567777777777776 344 36667777777777777765443  6777777777777777764433  667777777


Q ss_pred             EecccccCCCCCCccccCCCCCCEEEccCCcCcccCCcccccCCcccEeecccccceecCCcccCcccCceEeccccccc
Q 046712          135 LNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVAYNQFSGMIPPIYNISSLQYIFIHTNRFH  214 (566)
Q Consensus       135 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~  214 (566)
                      |++++|.+.+ ++. +..+++|++|++++|.+.+ + ..+..+++|+.|++++ .+                       .
T Consensus       117 L~L~~n~l~~-~~~-~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~l~~-~~-----------------------~  168 (466)
T 1o6v_A          117 LTLFNNQITD-IDP-LKNLTNLNRLELSSNTISD-I-SALSGLTSLQQLSFGN-QV-----------------------T  168 (466)
T ss_dssp             EECCSSCCCC-CGG-GTTCTTCSEEEEEEEEECC-C-GGGTTCTTCSEEEEEE-SC-----------------------C
T ss_pred             EECCCCCCCC-ChH-HcCCCCCCEEECCCCccCC-C-hhhccCCcccEeecCC-cc-----------------------c
Confidence            7777777663 332 6677777777777776653 2 2356666666666532 11                       1


Q ss_pred             ccCCCCCCCCCCCCcEEEcccccccccCcccccccCCCCeeecccccccccccccccCCCCCcEEECCCCccCCcCCCCh
Q 046712          215 GSVPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINRNLFSGKVSINFSRLQNLSRLNLGENNLGTGTTNDL  294 (566)
Q Consensus       215 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~  294 (566)
                      + .+.  ...+++|++|++++|.+...  ..+..+++|+.|++++|.+....+  +..+++|+.|++++|.+...     
T Consensus       169 ~-~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-----  236 (466)
T 1o6v_A          169 D-LKP--LANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI-----  236 (466)
T ss_dssp             C-CGG--GTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC-----
T ss_pred             C-chh--hccCCCCCEEECcCCcCCCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc-----
Confidence            1 111  22677888888888877643  347888999999999999876554  67899999999999988764     


Q ss_pred             hhhhhccCCCCCCEEEccCCeeeeecchhHhhhccCCcEEEccCCCCCCCcchhhhccCCCCeecccCCccccccccccc
Q 046712          295 DFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQISDTIPDVIANLVNLNALGVESNQLAGTIPLAIG  374 (566)
Q Consensus       295 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~  374 (566)
                         ..+..+++|+.|++++|.+.+..+  + ...+.|++|++++|.+.+..+  +..+++|++|++++|.+.+..+  +.
T Consensus       237 ---~~l~~l~~L~~L~l~~n~l~~~~~--~-~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~  306 (466)
T 1o6v_A          237 ---GTLASLTNLTDLDLANNQISNLAP--L-SGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--IS  306 (466)
T ss_dssp             ---GGGGGCTTCSEEECCSSCCCCCGG--G-TTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GG
T ss_pred             ---hhhhcCCCCCEEECCCCccccchh--h-hcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hc
Confidence               246788999999999999986654  3 334899999999999986544  7889999999999999986544  78


Q ss_pred             CCCCCCEEEccCCcccccCCccccCCCCCCeEeccCccccccCCCCCcCCCCCcEEEccCCcceeccchhhhhhcccceE
Q 046712          375 ELKSIQILFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSNGNCQNLILLTTRKNKLSGIVPRQLLRIITLSVL  454 (566)
Q Consensus       375 ~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~  454 (566)
                      .+++|++|++++|.+++..+  +..+++|++|++++|++.+.  ..+..+++|+.|++++|++.+..|  +..++.+ +.
T Consensus       307 ~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L-~~  379 (466)
T 1o6v_A          307 NLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRI-TQ  379 (466)
T ss_dssp             GCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTC-CE
T ss_pred             CCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCC-CE
Confidence            99999999999999986544  77899999999999999864  468899999999999999987766  5555555 99


Q ss_pred             EEccCCccccc
Q 046712          455 LDLSDNLLSGH  465 (566)
Q Consensus       455 L~l~~~~~~~~  465 (566)
                      |++++|.+++.
T Consensus       380 L~l~~n~~~~~  390 (466)
T 1o6v_A          380 LGLNDQAWTNA  390 (466)
T ss_dssp             EECCCEEEECC
T ss_pred             EeccCCcccCC
Confidence            99999999853

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=1.2e-33  Score=288.39  Aligned_cols=321  Identities=22%  Similarity=0.261  Sum_probs=239.8

Q ss_pred             ceEecccccccccCCCCCCCCCCCCcEEEcccccccccCcccccccCCCCeeecccccccccccccccCCCCCcEEECCC
Q 046712          204 QYIFIHTNRFHGSVPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINRNLFSGKVSINFSRLQNLSRLNLGE  283 (566)
Q Consensus       204 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~  283 (566)
                      +.++.++..++ .+|...   .++++.|++++|.++...+..+..+++|++|++++|.+....+..|..+++|++|++++
T Consensus        14 ~~v~c~~~~l~-~ip~~~---~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~   89 (477)
T 2id5_A           14 RAVLCHRKRFV-AVPEGI---PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRS   89 (477)
T ss_dssp             TEEECCSCCCS-SCCSCC---CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CEEEeCCCCcC-cCCCCC---CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCC
Confidence            45666666665 566543   36899999999999988788899999999999999999888788899999999999999


Q ss_pred             CccCCcCCCChhhhhhccCCCCCCEEEccCCeeeeecchhHhhhccCCcEEEccCCCCCCCcchhhhccCCCCeecccCC
Q 046712          284 NNLGTGTTNDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQISDTIPDVIANLVNLNALGVESN  363 (566)
Q Consensus       284 ~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~  363 (566)
                      |.+...+.      ..+..+++|+.|++++|.+....+..+... ++|++|++++|.+.+..+..+..+++|++|++++|
T Consensus        90 n~l~~~~~------~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n  162 (477)
T 2id5_A           90 NRLKLIPL------GVFTGLSNLTKLDISENKIVILLDYMFQDL-YNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKC  162 (477)
T ss_dssp             SCCCSCCT------TSSTTCTTCCEEECTTSCCCEECTTTTTTC-TTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESC
T ss_pred             CcCCccCc------ccccCCCCCCEEECCCCccccCChhHcccc-ccCCEEECCCCccceeChhhccCCCCCCEEECCCC
Confidence            98887665      456788999999999998887766655443 77888888888777666667777888888888888


Q ss_pred             cccccccccccCCCCCCEEEccCCcccccCCccccCCCCCCeEeccCccccccCCCCCcCCCCCcEEEccCCcceeccch
Q 046712          364 QLAGTIPLAIGELKSIQILFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSNGNCQNLILLTTRKNKLSGIVPR  443 (566)
Q Consensus       364 ~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~  443 (566)
                      .+++..+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|...+.++.......+|++|++++|.+.+..+.
T Consensus       163 ~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~  242 (477)
T 2id5_A          163 NLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYL  242 (477)
T ss_dssp             CCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHH
T ss_pred             cCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHH
Confidence            77766666677778888888888887766666777778888888887776666666655666777777777777644333


Q ss_pred             hhhhhcccceEEEccCCcccccCCcCccCCCCCCEEeCccccccccCCccccCCCCCcEEeCCCCcccccCCcCCcCCCC
Q 046712          444 QLLRIITLSVLLDLSDNLLSGHFPTKVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTISIPSTLSSLKS  523 (566)
Q Consensus       444 ~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~  523 (566)
                      .+..+..+ +.|++++|.+.+..+..|..+++|++|++++|.+.+..+..|..+++|++|+|++|.++...+..|..+++
T Consensus       243 ~~~~l~~L-~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~  321 (477)
T 2id5_A          243 AVRHLVYL-RFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGN  321 (477)
T ss_dssp             HHTTCTTC-CEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGG
T ss_pred             HhcCcccc-CeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcc
Confidence            44444333 77777777777666666777777777777777777666666777777777777777777555556667777


Q ss_pred             CCEEeCCCCcccc
Q 046712          524 ITELDLSRNNLSG  536 (566)
Q Consensus       524 L~~L~l~~n~~~~  536 (566)
                      |+.|++++|++..
T Consensus       322 L~~L~l~~N~l~c  334 (477)
T 2id5_A          322 LETLILDSNPLAC  334 (477)
T ss_dssp             CCEEECCSSCEEC
T ss_pred             cCEEEccCCCccC
Confidence            7777777777663

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=5.2e-33  Score=283.78  Aligned_cols=319  Identities=17%  Similarity=0.168  Sum_probs=187.0

Q ss_pred             EeecccccceecCCcccCcccCceEecccccccccCCCCCCCCCCCCcEEEcccccccccCcccccccCCCCeeeccccc
Q 046712          182 SFNVAYNQFSGMIPPIYNISSLQYIFIHTNRFHGSVPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINRNL  261 (566)
Q Consensus       182 ~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~  261 (566)
                      .++.+++.+..++..+  .+.++.|++++|.+.+..+. .+..+++|++|++++|.++...+..+..+++|+.|++++|.
T Consensus        15 ~v~c~~~~l~~ip~~~--~~~l~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~   91 (477)
T 2id5_A           15 AVLCHRKRFVAVPEGI--PTETRLLDLGKNRIKTLNQD-EFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR   91 (477)
T ss_dssp             EEECCSCCCSSCCSCC--CTTCSEEECCSSCCCEECTT-TTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred             EEEeCCCCcCcCCCCC--CCCCcEEECCCCccceECHh-HccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCc
Confidence            3444444444333322  23566666666666533222 22356666666666666665555666666666666666666


Q ss_pred             ccccccccccCCCCCcEEECCCCccCCcCCCChhhhhhccCCCCCCEEEccCCeeeeecchhHhhhccCCcEEEccCCCC
Q 046712          262 FSGKVSINFSRLQNLSRLNLGENNLGTGTTNDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQI  341 (566)
Q Consensus       262 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  341 (566)
                      +.......|..+++|++|++++|.+....+      ..+..+++|+.|++++|.+.+..+..+... ++|++|++++|.+
T Consensus        92 l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~------~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~l~~n~l  164 (477)
T 2id5_A           92 LKLIPLGVFTGLSNLTKLDISENKIVILLD------YMFQDLYNLKSLEVGDNDLVYISHRAFSGL-NSLEQLTLEKCNL  164 (477)
T ss_dssp             CCSCCTTSSTTCTTCCEEECTTSCCCEECT------TTTTTCTTCCEEEECCTTCCEECTTSSTTC-TTCCEEEEESCCC
T ss_pred             CCccCcccccCCCCCCEEECCCCccccCCh------hHccccccCCEEECCCCccceeChhhccCC-CCCCEEECCCCcC
Confidence            665555555666666666666666655443      334556666666666666665555444433 5666666666666


Q ss_pred             CCCcchhhhccCCCCeecccCCcccccccccccCCCCCCEEEccCCcccccCCccccCCCCCCeEeccCccccccCCCCC
Q 046712          342 SDTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSIQILFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSN  421 (566)
Q Consensus       342 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~  421 (566)
                      ++..+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|...+.++.......+|++|++++|.+....+..+
T Consensus       165 ~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~  244 (477)
T 2id5_A          165 TSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAV  244 (477)
T ss_dssp             SSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHH
T ss_pred             cccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHh
Confidence            65555556666666666666666665555556666666666666666554444444444566666666666653332345


Q ss_pred             cCCCCCcEEEccCCcceeccchhhhhhcccceEEEccCCcccccCCcCccCCCCCCEEeCccccccccCCccccCCCCCc
Q 046712          422 GNCQNLILLTTRKNKLSGIVPRQLLRIITLSVLLDLSDNLLSGHFPTKVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLE  501 (566)
Q Consensus       422 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~l~~~~~~~~~~~~~L~  501 (566)
                      ..+++|+.|++++|.+.+..+..+..+..+ +.|++++|.+.+..+..|..+++|+.|++++|.+++..+..|..+++|+
T Consensus       245 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L-~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~  323 (477)
T 2id5_A          245 RHLVYLRFLNLSYNPISTIEGSMLHELLRL-QEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLE  323 (477)
T ss_dssp             TTCTTCCEEECCSSCCCEECTTSCTTCTTC-CEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCC
T ss_pred             cCccccCeeECCCCcCCccChhhccccccC-CEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccC
Confidence            566666666666666665544444444443 6666666666666666666666666666666666644444556666666


Q ss_pred             EEeCCCCccc
Q 046712          502 YLGMQDNSFT  511 (566)
Q Consensus       502 ~L~L~~n~~~  511 (566)
                      +|++++|++.
T Consensus       324 ~L~l~~N~l~  333 (477)
T 2id5_A          324 TLILDSNPLA  333 (477)
T ss_dssp             EEECCSSCEE
T ss_pred             EEEccCCCcc
Confidence            6666666655

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=6.1e-33  Score=275.40  Aligned_cols=351  Identities=17%  Similarity=0.153  Sum_probs=216.7

Q ss_pred             CCCCcCCCCCCc-ccccccCCCCCcEEEEEcCCCccccccCccCcCCCCCCEEecCCCcccccCCcccCCCCCCCEEeCC
Q 046712           12 TSSWNNSINLCQ-WTGVTCGHRRQRVTGLDLRHQSVGGVLSPFVGNLNFLRSINLPNNSFRGKIPHEVGNLFRLQNLTLT   90 (566)
Q Consensus        12 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~l~~~~i~~~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~l~   90 (566)
                      ++.|.....||. |.+..|....     +.+............-..++++++|+++++.++...+..+.++++|++|+++
T Consensus         3 ~~~~~~~~~C~~~~~~~~c~~~~-----~~i~~~~~~~~~~~~~~~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~   77 (390)
T 3o6n_A            3 VKPRQPEYKCIDSNLQYDCVFYD-----VHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLN   77 (390)
T ss_dssp             ----CCEECBCC------EEEES-----CEECSSCCCCEESCSSGGGCCCSEEEEESCEESEECTHHHHHCCCCSEEECT
T ss_pred             cCCCCCccceehhhhhhccceee-----eeeecccccccccccccccCCceEEEecCCchhhCChhHhcccccCcEEECC
Confidence            678998888874 5555553211     1112211111111122456889999999998885555557888999999999


Q ss_pred             CCcCCCcCccccccCCCCcEEEcCCCcCCCCcchhccCCCCCCEEecccccCCCCCCccccCCCCCCEEEccCCcCcccC
Q 046712           91 NNYFLGKILTDLSHCSNLMKFEASNNKLEGEIPVKISNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRI  170 (566)
Q Consensus        91 ~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~  170 (566)
                      +|.++...+..|..+++|++|++++|.+.+..+..+.++++|++|++++|.+....+..+..+++|++|++++|.+.+..
T Consensus        78 ~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~  157 (390)
T 3o6n_A           78 DLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIE  157 (390)
T ss_dssp             TSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCC
T ss_pred             CCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccC
Confidence            99988777778889999999999999988777777888999999999999888433344688899999999999888777


Q ss_pred             CcccccCCcccEeecccccceecCCcccCcccCceEecccccccccCCCCCCCCCCCCcEEEcccccccccCcccccccC
Q 046712          171 PSTISHVRNLISFNVAYNQFSGMIPPIYNISSLQYIFIHTNRFHGSVPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNAT  250 (566)
Q Consensus       171 ~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~  250 (566)
                      +..+..+++|+.|++++|.+...  .+..+++|++++++++.+                         ..     +...+
T Consensus       158 ~~~~~~l~~L~~L~l~~n~l~~~--~~~~l~~L~~L~l~~n~l-------------------------~~-----~~~~~  205 (390)
T 3o6n_A          158 DDTFQATTSLQNLQLSSNRLTHV--DLSLIPSLFHANVSYNLL-------------------------ST-----LAIPI  205 (390)
T ss_dssp             TTTTSSCTTCCEEECCSSCCSBC--CGGGCTTCSEEECCSSCC-------------------------SE-----EECCS
T ss_pred             hhhccCCCCCCEEECCCCcCCcc--ccccccccceeecccccc-------------------------cc-----cCCCC
Confidence            77788888888888888876543  233344444444444433                         32     11223


Q ss_pred             CCCeeecccccccccccccccCCCCCcEEECCCCccCCcCCCChhhhhhccCCCCCCEEEccCCeeeeecchhHhhhccC
Q 046712          251 NLQGLEINRNLFSGKVSINFSRLQNLSRLNLGENNLGTGTTNDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSTT  330 (566)
Q Consensus       251 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~  330 (566)
                      +|+.+++++|.+.....   ...++|+.|++++|.+...        ..+..+++|+.|++++|.+.+..+.        
T Consensus       206 ~L~~L~l~~n~l~~~~~---~~~~~L~~L~l~~n~l~~~--------~~l~~l~~L~~L~Ls~n~l~~~~~~--------  266 (390)
T 3o6n_A          206 AVEELDASHNSINVVRG---PVNVELTILKLQHNNLTDT--------AWLLNYPGLVEVDLSYNELEKIMYH--------  266 (390)
T ss_dssp             SCSEEECCSSCCCEEEC---CCCSSCCEEECCSSCCCCC--------GGGGGCTTCSEEECCSSCCCEEESG--------
T ss_pred             cceEEECCCCeeeeccc---cccccccEEECCCCCCccc--------HHHcCCCCccEEECCCCcCCCcChh--------
Confidence            45555555555543322   2235677777777766543        2355667777777777766544332        


Q ss_pred             CcEEEccCCCCCCCcchhhhccCCCCeecccCCcccccccccccCCCCCCEEEccCCcccccCCccccCCCCCCeEeccC
Q 046712          331 MTEIAIGSNQISDTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSIQILFLNENFLRGTIPSSLGNLTLLTQLILEV  410 (566)
Q Consensus       331 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~  410 (566)
                                       .+..+++|++|++++|.+++ .+..+..+++|++|++++|.+. .++..+..+++|++|++++
T Consensus       267 -----------------~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~  327 (390)
T 3o6n_A          267 -----------------PFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDH  327 (390)
T ss_dssp             -----------------GGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCS
T ss_pred             -----------------HccccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCC
Confidence                             34444555555555555543 2333345556666666666555 3444455556666666666


Q ss_pred             ccccccCCCCCcCCCCCcEEEccCCcceec
Q 046712          411 NNLQGKIPPSNGNCQNLILLTTRKNKLSGI  440 (566)
Q Consensus       411 ~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~  440 (566)
                      |++... +  +..+++|+.|++++|++...
T Consensus       328 N~i~~~-~--~~~~~~L~~L~l~~N~~~~~  354 (390)
T 3o6n_A          328 NSIVTL-K--LSTHHTLKNLTLSHNDWDCN  354 (390)
T ss_dssp             SCCCCC-C--CCTTCCCSEEECCSSCEEHH
T ss_pred             Ccccee-C--chhhccCCEEEcCCCCccch
Confidence            665532 1  45566666666666666543

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=1.7e-32  Score=275.91  Aligned_cols=343  Identities=17%  Similarity=0.195  Sum_probs=242.4

Q ss_pred             CcEEEEEcCCCccccccCccCcCCCCCCEEecCCCcccccCCcccCCCCCCCEEeCCCCcCCCcCccccccCCCCcEEEc
Q 046712           34 QRVTGLDLRHQSVGGVLSPFVGNLNFLRSINLPNNSFRGKIPHEVGNLFRLQNLTLTNNYFLGKILTDLSHCSNLMKFEA  113 (566)
Q Consensus        34 ~~~~~l~l~~~~i~~~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l  113 (566)
                      +++++|+++++.+++. | .++.+++|++|++++|.+++ +|  +..+++|++|++++|.+++.   .++++++|++|++
T Consensus        42 ~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~-~~--~~~l~~L~~L~Ls~N~l~~~---~~~~l~~L~~L~L  113 (457)
T 3bz5_A           42 ATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITT-LD--LSQNTNLTYLACDSNKLTNL---DVTPLTKLTYLNC  113 (457)
T ss_dssp             TTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCC---CCTTCTTCCEEEC
T ss_pred             CCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCe-Ec--cccCCCCCEEECcCCCCcee---ecCCCCcCCEEEC
Confidence            7889999999999975 4 69999999999999999985 44  89999999999999999875   2889999999999


Q ss_pred             CCCcCCCCcchhccCCCCCCEEecccccCCCCCCccccCCCCCCEEEccCCcCcccCCcccccCCcccEeecccccceec
Q 046712          114 SNNKLEGEIPVKISNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVAYNQFSGM  193 (566)
Q Consensus       114 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~  193 (566)
                      ++|++++ ++  +..+++|++|++++|.+.+ +  .++.+++|++|++++|...+.+  .+..+++|+.|++++|.+.+.
T Consensus       114 ~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~-l--~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~l  185 (457)
T 3bz5_A          114 DTNKLTK-LD--VSQNPLLTYLNCARNTLTE-I--DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITEL  185 (457)
T ss_dssp             CSSCCSC-CC--CTTCTTCCEEECTTSCCSC-C--CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCCC
T ss_pred             CCCcCCe-ec--CCCCCcCCEEECCCCccce-e--ccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCcccee
Confidence            9999985 44  8899999999999999985 3  3889999999999999654444  578899999999999999875


Q ss_pred             CCcccCcccCceEecccccccccCCCCCCCCCCCCcEEEcccccccccCcccccccCCCCeeecccccccccccccccCC
Q 046712          194 IPPIYNISSLQYIFIHTNRFHGSVPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINRNLFSGKVSINFSRL  273 (566)
Q Consensus       194 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~  273 (566)
                      .  +..++.|+.|++++|.+++. +   ...+++|++|++++|.+++. +  +..+++|+.|++++|.+.+..   ...+
T Consensus       186 ~--l~~l~~L~~L~l~~N~l~~~-~---l~~l~~L~~L~Ls~N~l~~i-p--~~~l~~L~~L~l~~N~l~~~~---~~~l  253 (457)
T 3bz5_A          186 D--VSQNKLLNRLNCDTNNITKL-D---LNQNIQLTFLDCSSNKLTEI-D--VTPLTQLTYFDCSVNPLTELD---VSTL  253 (457)
T ss_dssp             C--CTTCTTCCEEECCSSCCSCC-C---CTTCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCCC---CTTC
T ss_pred             c--cccCCCCCEEECcCCcCCee-c---cccCCCCCEEECcCCccccc-C--ccccCCCCEEEeeCCcCCCcC---HHHC
Confidence            4  78899999999999998853 2   34789999999999999863 3  788999999999999988654   4567


Q ss_pred             CCCcEEECCCCccCCcCCCChhhhhhccCCCCCCEEEccCCeeeeecchhHhhhccCCcEEEccCCCCCCCcchh-----
Q 046712          274 QNLSRLNLGENNLGTGTTNDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQISDTIPDV-----  348 (566)
Q Consensus       274 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-----  348 (566)
                      ++|+.|+++.+.+                    +.|++++|.+.+..|.   ...+.|+.|++++|...+.+|..     
T Consensus       254 ~~L~~L~l~~n~L--------------------~~L~l~~n~~~~~~~~---~~l~~L~~L~Ls~n~~l~~l~~~~~~L~  310 (457)
T 3bz5_A          254 SKLTTLHCIQTDL--------------------LEIDLTHNTQLIYFQA---EGCRKIKELDVTHNTQLYLLDCQAAGIT  310 (457)
T ss_dssp             TTCCEEECTTCCC--------------------SCCCCTTCTTCCEEEC---TTCTTCCCCCCTTCTTCCEEECTTCCCS
T ss_pred             CCCCEEeccCCCC--------------------CEEECCCCccCCcccc---cccccCCEEECCCCcccceeccCCCcce
Confidence            7888888776543                    3444444443333321   11245555555555444333321     


Q ss_pred             ---hhccCCCCeecccCCcccccccccccCCCCCCEEEccCCcccccCCccccCCCCCCeEeccCccccccCCCCCcCCC
Q 046712          349 ---IANLVNLNALGVESNQLAGTIPLAIGELKSIQILFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSNGNCQ  425 (566)
Q Consensus       349 ---~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~  425 (566)
                         ++.+++|++|++++|++++.   .+..+++|+.|++++|.+++        ++.|..|++..|.+.+.     ..+.
T Consensus       311 ~L~l~~~~~L~~L~L~~N~l~~l---~l~~l~~L~~L~l~~N~l~~--------l~~L~~L~l~~n~l~g~-----~~~~  374 (457)
T 3bz5_A          311 ELDLSQNPKLVYLYLNNTELTEL---DVSHNTKLKSLSCVNAHIQD--------FSSVGKIPALNNNFEAE-----GQTI  374 (457)
T ss_dssp             CCCCTTCTTCCEEECTTCCCSCC---CCTTCTTCSEEECCSSCCCB--------CTTGGGSSGGGTSEEEE-----EEEE
T ss_pred             EechhhcccCCEEECCCCccccc---ccccCCcCcEEECCCCCCCC--------ccccccccccCCcEEec-----ceee
Confidence               22234455555555555432   14445555555555554442        13344444444444432     2333


Q ss_pred             CCcEEEccCCcceeccch
Q 046712          426 NLILLTTRKNKLSGIVPR  443 (566)
Q Consensus       426 ~L~~L~l~~~~~~~~~~~  443 (566)
                      .+..+++++|++++.+|.
T Consensus       375 ~l~~l~l~~N~l~g~ip~  392 (457)
T 3bz5_A          375 TMPKETLTNNSLTIAVSP  392 (457)
T ss_dssp             ECCCBCCBTTBEEEECCT
T ss_pred             ecCccccccCcEEEEcCh
Confidence            444444444444444443

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=100.00  E-value=1.4e-31  Score=261.51  Aligned_cols=304  Identities=25%  Similarity=0.355  Sum_probs=194.4

Q ss_pred             CCCCcEEEcccccccccCcccccccCCCCeeecccccccccccccccCCCCCcEEECCCCccCCcCCCChhhhhhccCCC
Q 046712          225 LPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINRNLFSGKVSINFSRLQNLSRLNLGENNLGTGTTNDLDFITLLTNCT  304 (566)
Q Consensus       225 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~  304 (566)
                      +++|++|+++++.+...  ..+..+++|++|++++|.+....+  +..+++|++|++++|.+...        ..+..++
T Consensus        43 l~~L~~L~l~~~~i~~~--~~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~~--------~~~~~l~  110 (347)
T 4fmz_A           43 LESITKLVVAGEKVASI--QGIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDI--------SALQNLT  110 (347)
T ss_dssp             HTTCSEEECCSSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--------GGGTTCT
T ss_pred             cccccEEEEeCCccccc--hhhhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccCc--------hHHcCCC
Confidence            34444455544444322  124445555555555555543322  45555555555555554432        1244555


Q ss_pred             CCCEEEccCCeeeeecchhHhhhccCCcEEEccCCCCCCCcchhhhccCCCCeecccCCcccccccccccCCCCCCEEEc
Q 046712          305 KLEVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQISDTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSIQILFL  384 (566)
Q Consensus       305 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l  384 (566)
                      +|++|++++|.+.+..+  + ...+.|++|++++|......+ .+..+++|++|++++|.+.+..+  +..+++|++|++
T Consensus       111 ~L~~L~l~~n~i~~~~~--~-~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l  184 (347)
T 4fmz_A          111 NLRELYLNEDNISDISP--L-ANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSL  184 (347)
T ss_dssp             TCSEEECTTSCCCCCGG--G-TTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEEC
T ss_pred             cCCEEECcCCcccCchh--h-ccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEc
Confidence            55555555555553322  1 223556666666664433333 35666777777777776664333  566677777777


Q ss_pred             cCCcccccCCccccCCCCCCeEeccCccccccCCCCCcCCCCCcEEEccCCcceeccchhhhhhcccceEEEccCCcccc
Q 046712          385 NENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSNGNCQNLILLTTRKNKLSGIVPRQLLRIITLSVLLDLSDNLLSG  464 (566)
Q Consensus       385 ~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~  464 (566)
                      ++|.+.+. +. +..+++|+.+++++|.+.+..+  +..+++|++|++++|.+.+..+  +..++. ++.|++++|.+.+
T Consensus       185 ~~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~-L~~L~l~~n~l~~  257 (347)
T 4fmz_A          185 NYNQIEDI-SP-LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQ-LTWLEIGTNQISD  257 (347)
T ss_dssp             TTSCCCCC-GG-GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTT-CCEEECCSSCCCC
T ss_pred             cCCccccc-cc-ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCC-CCEEECCCCccCC
Confidence            77766532 22 5666777777777776664333  5666777777777777664333  333333 3777777777764


Q ss_pred             cCCcCccCCCCCCEEeCccccccccCCccccCCCCCcEEeCCCCcccccCCcCCcCCCCCCEEeCCCCccccccCccccc
Q 046712          465 HFPTKVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTISIPSTLSSLKSITELDLSRNNLSGHIPQYLEN  544 (566)
Q Consensus       465 ~~~~~~~~~~~L~~L~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~  544 (566)
                      .  ..+..+++|+.|++++|.+.+ + ..+..+++|++|++++|.+++..++.+..+++|++|++++|++++..|  +..
T Consensus       258 ~--~~~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~  331 (347)
T 4fmz_A          258 I--NAVKDLTKLKMLNVGSNQISD-I-SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LAS  331 (347)
T ss_dssp             C--GGGTTCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGG
T ss_pred             C--hhHhcCCCcCEEEccCCccCC-C-hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhh
Confidence            3  457889999999999999984 3 458889999999999999998888889999999999999999997666  889


Q ss_pred             cccCceeecccCcCc
Q 046712          545 LSFLLFLNMSYNHFE  559 (566)
Q Consensus       545 l~~L~~L~l~~n~~~  559 (566)
                      +++|++|++++|+++
T Consensus       332 l~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          332 LSKMDSADFANQVIK  346 (347)
T ss_dssp             CTTCSEESSSCC---
T ss_pred             hhccceeehhhhccc
Confidence            999999999999886

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=100.00  E-value=1.1e-31  Score=280.70  Aligned_cols=198  Identities=15%  Similarity=0.092  Sum_probs=132.4

Q ss_pred             CCCCCCCCCcCCCCCCc----ccccccCCCCCcEEEEEcCCCccccccCccCcCCCCCCEEecCCCcccccCCcccCCCC
Q 046712            7 DPLGVTSSWNNSINLCQ----WTGVTCGHRRQRVTGLDLRHQSVGGVLSPFVGNLNFLRSINLPNNSFRGKIPHEVGNLF   82 (566)
Q Consensus         7 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~l~l~~~~i~~~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~~~l~   82 (566)
                      +++..++.|..+..||.    |..+.|.      .+++-........  ..-..+++++.+++++|.++...+..+.+++
T Consensus         4 ~~~~~l~~~~~~~~C~~~~~~~~c~~~~------~~i~~~~~~~~~~--~~~l~l~~l~~l~l~~~~l~~lp~~~~~~l~   75 (597)
T 3oja_B            4 QQRYNVKPRQPEYKCIDSNLQYDCVFYD------VHIDMQTQDVYFG--FEDITLNNQKIVTFKNSTMRKLPAALLDSFR   75 (597)
T ss_dssp             -------CCCSEECCCCC--CCSEEECS------CEECSSCCCCEES--CSSGGGCCCSEEEESSCEESEECTHHHHHCC
T ss_pred             cccccccCCCCCCcCcccCcCceeEecC------ceecccccccccC--cccccCCCceEEEeeCCCCCCcCHHHHccCC
Confidence            45667889999988873    4443332      1111111111111  1123467888888888888755556677888


Q ss_pred             CCCEEeCCCCcCCCcCccccccCCCCcEEEcCCCcCCCCcchhccCCCCCCEEecccccCCCCCCccccCCCCCCEEEcc
Q 046712           83 RLQNLTLTNNYFLGKILTDLSHCSNLMKFEASNNKLEGEIPVKISNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVR  162 (566)
Q Consensus        83 ~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~  162 (566)
                      +|++|++++|.+++..+..|..+++|++|++++|.+.+..+..++.+++|++|++++|.+.+..+..++.+++|++|+++
T Consensus        76 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls  155 (597)
T 3oja_B           76 QVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMS  155 (597)
T ss_dssp             CCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEee
Confidence            88888888888887777788888888888888888887777777888888888888888874444446788888888888


Q ss_pred             CCcCcccCCcccccCCcccEeecccccceecCCcccCcccCceEeccccccc
Q 046712          163 GNRLGGRIPSTISHVRNLISFNVAYNQFSGMIPPIYNISSLQYIFIHTNRFH  214 (566)
Q Consensus       163 ~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~  214 (566)
                      +|.+.+..|..+..+++|+.|++++|.+.+.  .+..++.|+.|++++|.+.
T Consensus       156 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~--~~~~l~~L~~L~l~~n~l~  205 (597)
T 3oja_B          156 NNNLERIEDDTFQATTSLQNLQLSSNRLTHV--DLSLIPSLFHANVSYNLLS  205 (597)
T ss_dssp             SSCCCBCCTTTTTTCTTCCEEECTTSCCSBC--CGGGCTTCSEEECCSSCCS
T ss_pred             CCcCCCCChhhhhcCCcCcEEECcCCCCCCc--ChhhhhhhhhhhcccCccc
Confidence            8888877777788888888888888776543  2334455555555555443

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=2.2e-31  Score=264.22  Aligned_cols=309  Identities=19%  Similarity=0.194  Sum_probs=138.3

Q ss_pred             cccCceEecccccccccCCCCCCCCCCCCcEEEcccccccccCcccccccCCCCeeecccccccccccccccCCCCCcEE
Q 046712          200 ISSLQYIFIHTNRFHGSVPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINRNLFSGKVSINFSRLQNLSRL  279 (566)
Q Consensus       200 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L  279 (566)
                      +++++.++++++.+. .+|...+..+++|++|++++|.+....+..+..+++|++|++++|.+....+..+..+++|++|
T Consensus        44 l~~l~~l~l~~~~l~-~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  122 (390)
T 3o6n_A           44 LNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL  122 (390)
T ss_dssp             GCCCSEEEEESCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             cCCceEEEecCCchh-hCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence            344555555555443 3333333344555555555555554444445555555555555555554444445555555555


Q ss_pred             ECCCCccCCcCCCChhhhhhccCCCCCCEEEccCCeeeeecchhHhhhccCCcEEEccCCCCCCCcchhhhccCCCCeec
Q 046712          280 NLGENNLGTGTTNDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQISDTIPDVIANLVNLNALG  359 (566)
Q Consensus       280 ~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~  359 (566)
                      ++++|.+...+.      ..+..+++|++|++++|.+.+..+..+... ++|++|++++|.+++.   .+..+++|++++
T Consensus       123 ~L~~n~l~~l~~------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~l~~n~l~~~---~~~~l~~L~~L~  192 (390)
T 3o6n_A          123 VLERNDLSSLPR------GIFHNTPKLTTLSMSNNNLERIEDDTFQAT-TSLQNLQLSSNRLTHV---DLSLIPSLFHAN  192 (390)
T ss_dssp             ECCSSCCCCCCT------TTTTTCTTCCEEECCSSCCCBCCTTTTSSC-TTCCEEECCSSCCSBC---CGGGCTTCSEEE
T ss_pred             ECCCCccCcCCH------HHhcCCCCCcEEECCCCccCccChhhccCC-CCCCEEECCCCcCCcc---ccccccccceee
Confidence            555555544333      223444555555555555544333333222 4455555555544432   133344455555


Q ss_pred             ccCCcccccccccccCCCCCCEEEccCCcccccCCccccCCCCCCeEeccCccccccCCCCCcCCCCCcEEEccCCccee
Q 046712          360 VESNQLAGTIPLAIGELKSIQILFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSNGNCQNLILLTTRKNKLSG  439 (566)
Q Consensus       360 l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~  439 (566)
                      +++|.+.+     +...++|++|++++|.+... +.  ..+++|+.|++++|.+.+.  ..+..+++|++|++++|.+.+
T Consensus       193 l~~n~l~~-----~~~~~~L~~L~l~~n~l~~~-~~--~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~  262 (390)
T 3o6n_A          193 VSYNLLST-----LAIPIAVEELDASHNSINVV-RG--PVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEK  262 (390)
T ss_dssp             CCSSCCSE-----EECCSSCSEEECCSSCCCEE-EC--CCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCE
T ss_pred             cccccccc-----cCCCCcceEEECCCCeeeec-cc--cccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCC
Confidence            55544432     12223455555555544422 11  1124455555555544421  234444455555555554444


Q ss_pred             ccchhhhhhcccceEEEccCCcccccCCcCccCCCCCCEEeCccccccccCCccccCCCCCcEEeCCCCcccccCCcCCc
Q 046712          440 IVPRQLLRIITLSVLLDLSDNLLSGHFPTKVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTISIPSTLS  519 (566)
Q Consensus       440 ~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~  519 (566)
                      ..+..+..+..+ +.|++++|.+.+. +..+..+++|++|++++|++. .+|..+..+++|++|++++|.++.. +  +.
T Consensus       263 ~~~~~~~~l~~L-~~L~L~~n~l~~~-~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~--~~  336 (390)
T 3o6n_A          263 IMYHPFVKMQRL-ERLYISNNRLVAL-NLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LS  336 (390)
T ss_dssp             EESGGGTTCSSC-CEEECCSSCCCEE-ECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CC
T ss_pred             cChhHccccccC-CEEECCCCcCccc-CcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCcccee-C--ch
Confidence            434443333333 4444444444422 222234444444444444444 3333344444444444444444421 1  33


Q ss_pred             CCCCCCEEeCCCCccc
Q 046712          520 SLKSITELDLSRNNLS  535 (566)
Q Consensus       520 ~l~~L~~L~l~~n~~~  535 (566)
                      .+++|+.|++++|++.
T Consensus       337 ~~~~L~~L~l~~N~~~  352 (390)
T 3o6n_A          337 THHTLKNLTLSHNDWD  352 (390)
T ss_dssp             TTCCCSEEECCSSCEE
T ss_pred             hhccCCEEEcCCCCcc
Confidence            4444444444444444

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=100.00  E-value=6.5e-31  Score=256.73  Aligned_cols=306  Identities=24%  Similarity=0.361  Sum_probs=159.6

Q ss_pred             cCCCCCCEEecCCCcccccCCcccCCCCCCCEEeCCCCcCCCcCccccccCCCCcEEEcCCCcCCCCcchhccCCCCCCE
Q 046712           55 GNLNFLRSINLPNNSFRGKIPHEVGNLFRLQNLTLTNNYFLGKILTDLSHCSNLMKFEASNNKLEGEIPVKISNLLMLQI  134 (566)
Q Consensus        55 ~~l~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~  134 (566)
                      ..+++|++|+++++.+. .++ .+..+++|++|++++|.++...+  +..+++|++|++++|.+++ ++ .+.++++|++
T Consensus        41 ~~l~~L~~L~l~~~~i~-~~~-~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~-~~-~~~~l~~L~~  114 (347)
T 4fmz_A           41 EELESITKLVVAGEKVA-SIQ-GIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITD-IS-ALQNLTNLRE  114 (347)
T ss_dssp             HHHTTCSEEECCSSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-CG-GGTTCTTCSE
T ss_pred             hhcccccEEEEeCCccc-cch-hhhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccC-ch-HHcCCCcCCE
Confidence            45556666666666554 233 25556666666666665553322  5556666666666665553 22 3555666666


Q ss_pred             EecccccCCCCCCccccCCCCCCEEEccCCcCcccCCcccccCCcccEeecccccceecCCcccCcccCceEeccccccc
Q 046712          135 LNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVAYNQFSGMIPPIYNISSLQYIFIHTNRFH  214 (566)
Q Consensus       135 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~  214 (566)
                      |++++|.+.+ ++. +..+++|++|++++|.... .+..+..+++|++|++++|.+..... +..+++|++|++++|.+.
T Consensus       115 L~l~~n~i~~-~~~-~~~l~~L~~L~l~~n~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n~l~  190 (347)
T 4fmz_A          115 LYLNEDNISD-ISP-LANLTKMYSLNLGANHNLS-DLSPLSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYNQIE  190 (347)
T ss_dssp             EECTTSCCCC-CGG-GTTCTTCCEEECTTCTTCC-CCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTTSCCC
T ss_pred             EECcCCcccC-chh-hccCCceeEEECCCCCCcc-cccchhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEccCCccc
Confidence            6666665552 222 5556666666666654332 22335555555555555554443222 333344444444444333


Q ss_pred             ccCCCCCCCCCCCCcEEEcccccccccCcccccccCCCCeeecccccccccccccccCCCCCcEEECCCCccCCcCCCCh
Q 046712          215 GSVPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINRNLFSGKVSINFSRLQNLSRLNLGENNLGTGTTNDL  294 (566)
Q Consensus       215 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~  294 (566)
                      + ++.  ...+++|+.+++++|.+.+..+  +..+++|++|++++|.+....+  +..+++|++|++++|.+...     
T Consensus       191 ~-~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-----  258 (347)
T 4fmz_A          191 D-ISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI-----  258 (347)
T ss_dssp             C-CGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC-----
T ss_pred             c-ccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC-----
Confidence            1 111  1134445555554444442221  4444455555555544443222  34444444444444443321     


Q ss_pred             hhhhhccCCCCCCEEEccCCeeeeecchhHhhhccCCcEEEccCCCCCCCcchhhhccCCCCeecccCCccccccccccc
Q 046712          295 DFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQISDTIPDVIANLVNLNALGVESNQLAGTIPLAIG  374 (566)
Q Consensus       295 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~  374 (566)
                         ..+..+                         ++|++|++++|.+++.  ..+..+++|++|++++|.+.+..+..+.
T Consensus       259 ---~~~~~l-------------------------~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~  308 (347)
T 4fmz_A          259 ---NAVKDL-------------------------TKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIG  308 (347)
T ss_dssp             ---GGGTTC-------------------------TTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHH
T ss_pred             ---hhHhcC-------------------------CCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhh
Confidence               113333                         4455555555554432  2456677777777777777766666777


Q ss_pred             CCCCCCEEEccCCcccccCCccccCCCCCCeEeccCcccc
Q 046712          375 ELKSIQILFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQ  414 (566)
Q Consensus       375 ~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~  414 (566)
                      .+++|++|++++|.+++..+  +..+++|++|++++|.++
T Consensus       309 ~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          309 GLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK  346 (347)
T ss_dssp             TCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred             ccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence            77777777777777764433  666777777777777664

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.97  E-value=3.5e-31  Score=253.65  Aligned_cols=258  Identities=29%  Similarity=0.444  Sum_probs=223.0

Q ss_pred             CCCCEEEccCCeeee--ecchhHhhhccCCcEEEccC-CCCCCCcchhhhccCCCCeecccCCcccccccccccCCCCCC
Q 046712          304 TKLEVLDLHSNRFGG--VLPFSLANLSTTMTEIAIGS-NQISDTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSIQ  380 (566)
Q Consensus       304 ~~L~~L~l~~~~~~~--~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~  380 (566)
                      .+++.|+++++.+.+  ..|..+... +.|++|++++ +.+.+.+|..+..+++|++|++++|.+++..|..+..+++|+
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l-~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~  128 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANL-PYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLV  128 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGC-TTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred             ceEEEEECCCCCccCCcccChhHhCC-CCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCC
Confidence            467777777777776  566665554 7778888874 777777888888899999999999999888888888999999


Q ss_pred             EEEccCCcccccCCccccCCCCCCeEeccCccccccCCCCCcCCC-CCcEEEccCCcceeccchhhhhhcccceEEEccC
Q 046712          381 ILFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSNGNCQ-NLILLTTRKNKLSGIVPRQLLRIITLSVLLDLSD  459 (566)
Q Consensus       381 ~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~  459 (566)
                      +|++++|.+++.+|..+..+++|++|++++|.+.+.+|..+..++ .|++|++++|.+.+..|..+....  ++.|++++
T Consensus       129 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~--L~~L~Ls~  206 (313)
T 1ogq_A          129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN--LAFVDLSR  206 (313)
T ss_dssp             EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC--CSEEECCS
T ss_pred             EEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc--ccEEECcC
Confidence            999999999888888888999999999999999888888888887 999999999999888888887775  69999999


Q ss_pred             CcccccCCcCccCCCCCCEEeCccccccccCCccccCCCCCcEEeCCCCcccccCCcCCcCCCCCCEEeCCCCccccccC
Q 046712          460 NLLSGHFPTKVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTISIPSTLSSLKSITELDLSRNNLSGHIP  539 (566)
Q Consensus       460 ~~~~~~~~~~~~~~~~L~~L~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~  539 (566)
                      |.+.+..+..+..+++|+.|++++|.+.+..+. +..+++|++|++++|.+++.+|.++..+++|++|++++|++++.+|
T Consensus       207 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip  285 (313)
T 1ogq_A          207 NMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP  285 (313)
T ss_dssp             SEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECC
T ss_pred             CcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCC
Confidence            999988888999999999999999999855554 8889999999999999998999999999999999999999999999


Q ss_pred             ccccccccCceeecccCc-CcccCCCCC
Q 046712          540 QYLENLSFLLFLNMSYNH-FEGKVPIEC  566 (566)
Q Consensus       540 ~~l~~l~~L~~L~l~~n~-~~~~~p~~~  566 (566)
                      +. ..+++|+.+++++|+ +.|.-+..|
T Consensus       286 ~~-~~l~~L~~l~l~~N~~lc~~p~~~C  312 (313)
T 1ogq_A          286 QG-GNLQRFDVSAYANNKCLCGSPLPAC  312 (313)
T ss_dssp             CS-TTGGGSCGGGTCSSSEEESTTSSCC
T ss_pred             CC-ccccccChHHhcCCCCccCCCCCCC
Confidence            87 889999999999998 666433456

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.97  E-value=1.5e-30  Score=272.28  Aligned_cols=308  Identities=19%  Similarity=0.204  Sum_probs=148.2

Q ss_pred             CCCcEEEcccccccccCcccccccCCCCeeecccccccccccccccCCCCCcEEECCCCccCCcCCCChhhhhhccCCCC
Q 046712          226 PNLRYFSISGNNLTGSLQDSLSNATNLQGLEINRNLFSGKVSINFSRLQNLSRLNLGENNLGTGTTNDLDFITLLTNCTK  305 (566)
Q Consensus       226 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~  305 (566)
                      ++++.++++++.+....+..+..+++|+.|++++|.+....+..|..+++|+.|++++|.+...++      ..+..+++
T Consensus        51 ~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~------~~~~~l~~  124 (597)
T 3oja_B           51 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPP------HVFQNVPL  124 (597)
T ss_dssp             CCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCT------TTTTTCTT
T ss_pred             CCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCH------HHHcCCCC
Confidence            444444444444444333344444555555555554444444444445555555555554444333      22344455


Q ss_pred             CCEEEccCCeeeeecchhHhhhccCCcEEEccCCCCCCCcchhhhccCCCCeecccCCcccccccccccCCCCCCEEEcc
Q 046712          306 LEVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQISDTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSIQILFLN  385 (566)
Q Consensus       306 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  385 (566)
                      |+.|++++|.+....+..+.. .++|++|++++|.+.+..+..+..+++|++|++++|.+++..   +..+++|+.|+++
T Consensus       125 L~~L~L~~n~l~~l~~~~~~~-l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~  200 (597)
T 3oja_B          125 LTVLVLERNDLSSLPRGIFHN-TPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVS  200 (597)
T ss_dssp             CCEEECCSSCCCCCCTTTTTT-CTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECC
T ss_pred             CCEEEeeCCCCCCCCHHHhcc-CCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcc
Confidence            555555555444222222222 245555555555554444444555555555555555554321   3344555555555


Q ss_pred             CCcccccCCccccCCCCCCeEeccCccccccCCCCCcCCCCCcEEEccCCcceeccchhhhhhcccceEEEccCCccccc
Q 046712          386 ENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSNGNCQNLILLTTRKNKLSGIVPRQLLRIITLSVLLDLSDNLLSGH  465 (566)
Q Consensus       386 ~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~  465 (566)
                      +|.+++     +...++|+.|++++|.+....+.   ..++|+.|++++|.+.+.  ..+..++.+ +.|++++|.+.+.
T Consensus       201 ~n~l~~-----l~~~~~L~~L~ls~n~l~~~~~~---~~~~L~~L~L~~n~l~~~--~~l~~l~~L-~~L~Ls~N~l~~~  269 (597)
T 3oja_B          201 YNLLST-----LAIPIAVEELDASHNSINVVRGP---VNVELTILKLQHNNLTDT--AWLLNYPGL-VEVDLSYNELEKI  269 (597)
T ss_dssp             SSCCSE-----EECCTTCSEEECCSSCCCEEECS---CCSCCCEEECCSSCCCCC--GGGGGCTTC-SEEECCSSCCCEE
T ss_pred             cCcccc-----ccCCchhheeeccCCcccccccc---cCCCCCEEECCCCCCCCC--hhhccCCCC-CEEECCCCccCCC
Confidence            554431     12234455555555554422211   124555555555555432  223333332 5555555555555


Q ss_pred             CCcCccCCCCCCEEeCccccccccCCccccCCCCCcEEeCCCCcccccCCcCCcCCCCCCEEeCCCCccccccCcccccc
Q 046712          466 FPTKVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTISIPSTLSSLKSITELDLSRNNLSGHIPQYLENL  545 (566)
Q Consensus       466 ~~~~~~~~~~L~~L~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l  545 (566)
                      .+..|..+++|+.|++++|.+. .+|..+..+++|++|+|++|.++ .+|..+..+++|+.|++++|.+... +  +..+
T Consensus       270 ~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~-~--~~~~  344 (597)
T 3oja_B          270 MYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTH  344 (597)
T ss_dssp             ESGGGTTCSSCCEEECTTSCCC-EEECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTT
T ss_pred             CHHHhcCccCCCEEECCCCCCC-CCCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCc-C--hhhc
Confidence            5555555555555555555555 23444444555555555555555 3444555555555555555555532 1  3445


Q ss_pred             ccCceeecccCcCc
Q 046712          546 SFLLFLNMSYNHFE  559 (566)
Q Consensus       546 ~~L~~L~l~~n~~~  559 (566)
                      ++|+.|++++|+++
T Consensus       345 ~~L~~L~l~~N~~~  358 (597)
T 3oja_B          345 HTLKNLTLSHNDWD  358 (597)
T ss_dssp             CCCSEEECCSSCEE
T ss_pred             CCCCEEEeeCCCCC
Confidence            55555555555554

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.97  E-value=1.5e-33  Score=286.86  Aligned_cols=289  Identities=17%  Similarity=0.147  Sum_probs=168.2

Q ss_pred             CCCCEEecccccCCCCCCc-cccCCCCCCEEEccCCcCcc----cCCcccccCCcccEeecccccceecCC-cccCcccC
Q 046712          130 LMLQILNIAENHLKGQLPA-SIGNLSALQEIDVRGNRLGG----RIPSTISHVRNLISFNVAYNQFSGMIP-PIYNISSL  203 (566)
Q Consensus       130 ~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~i~~----~~~~~l~~l~~L~~L~l~~~~~~~~~~-~l~~~~~L  203 (566)
                      ++|++|+++++.+...... .+..+++|++|++++|.+..    .++..+..+++|++|++++|.+.+... .+.     
T Consensus         3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~-----   77 (461)
T 1z7x_W            3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVL-----   77 (461)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHH-----
T ss_pred             ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHH-----
Confidence            4566677766666532222 24556666666666666652    233445555666666666655432111 000     


Q ss_pred             ceEecccccccccCCCCCCCCCCCCcEEEcccccccc----cCcccccccCCCCeeecccccccccccccc-----cCCC
Q 046712          204 QYIFIHTNRFHGSVPLDNGVNLPNLRYFSISGNNLTG----SLQDSLSNATNLQGLEINRNLFSGKVSINF-----SRLQ  274 (566)
Q Consensus       204 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~----~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~-----~~~~  274 (566)
                                     .......++|++|++++|.++.    ..+..+..+++|++|++++|.+.......+     ...+
T Consensus        78 ---------------~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~  142 (461)
T 1z7x_W           78 ---------------QGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQC  142 (461)
T ss_dssp             ---------------HTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTC
T ss_pred             ---------------HHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCC
Confidence                           0000011257777777777663    335566777788888888877764333222     2245


Q ss_pred             CCcEEECCCCccCCcCCCChhhhhhccCCCCCCEEEccCCeeeeecchhHhhh----ccCCcEEEccCCCCCCC----cc
Q 046712          275 NLSRLNLGENNLGTGTTNDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANL----STTMTEIAIGSNQISDT----IP  346 (566)
Q Consensus       275 ~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~----~~~L~~L~l~~~~~~~~----~~  346 (566)
                      +|++|++++|.+......  .+...+..+++|+.|++++|.+.+..+..+...    .+.|++|++++|.++..    ++
T Consensus       143 ~L~~L~L~~n~l~~~~~~--~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~  220 (461)
T 1z7x_W          143 RLEKLQLEYCSLSAASCE--PLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLC  220 (461)
T ss_dssp             CCCEEECTTSCCBGGGHH--HHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHH
T ss_pred             cceEEECCCCCCCHHHHH--HHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHH
Confidence            788888888876653321  122445667888888888888765544444332    24778888888877653    35


Q ss_pred             hhhhccCCCCeecccCCccccccc-----ccccCCCCCCEEEccCCccccc----CCccccCCCCCCeEeccCccccccC
Q 046712          347 DVIANLVNLNALGVESNQLAGTIP-----LAIGELKSIQILFLNENFLRGT----IPSSLGNLTLLTQLILEVNNLQGKI  417 (566)
Q Consensus       347 ~~~~~l~~L~~L~l~~~~~~~~~~-----~~~~~~~~L~~L~l~~n~~~~~----~~~~~~~~~~L~~L~l~~~~l~~~~  417 (566)
                      ..+..+++|++|++++|.+.+...     ..+..+++|++|++++|.+++.    ++..+..+++|++|++++|.+.+..
T Consensus       221 ~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~  300 (461)
T 1z7x_W          221 GIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEG  300 (461)
T ss_dssp             HHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHH
T ss_pred             HHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHH
Confidence            566677888888888887764321     1223467777777777777643    3445555677777777777665332


Q ss_pred             CCCCc-----CCCCCcEEEccCCcceec
Q 046712          418 PPSNG-----NCQNLILLTTRKNKLSGI  440 (566)
Q Consensus       418 ~~~~~-----~~~~L~~L~l~~~~~~~~  440 (566)
                      +..+.     ..++|++|++++|.+.+.
T Consensus       301 ~~~l~~~l~~~~~~L~~L~L~~n~l~~~  328 (461)
T 1z7x_W          301 ARLLCETLLEPGCQLESLWVKSCSFTAA  328 (461)
T ss_dssp             HHHHHHHHTSTTCCCCEEECTTSCCBGG
T ss_pred             HHHHHHHhccCCccceeeEcCCCCCchH
Confidence            22111     124666666666665543

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.97  E-value=9e-33  Score=281.13  Aligned_cols=382  Identities=20%  Similarity=0.162  Sum_probs=267.4

Q ss_pred             CCcccEeecccccceecCC--cccCcccCceEeccccccccc----CCCCCCCCCCCCcEEEcccccccccCccccc-cc
Q 046712          177 VRNLISFNVAYNQFSGMIP--PIYNISSLQYIFIHTNRFHGS----VPLDNGVNLPNLRYFSISGNNLTGSLQDSLS-NA  249 (566)
Q Consensus       177 l~~L~~L~l~~~~~~~~~~--~l~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~-~~  249 (566)
                      .++|++|+++++.+.....  .+..+++|++|++++|.+...    ++... ..+++|++|++++|.+.+.....+. .+
T Consensus         2 ~~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l-~~~~~L~~L~Ls~n~l~~~~~~~l~~~l   80 (461)
T 1z7x_W            2 SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSAL-RVNPALAELNLRSNELGDVGVHCVLQGL   80 (461)
T ss_dssp             CEEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHH-HTCTTCCEEECTTCCCHHHHHHHHHHTT
T ss_pred             CccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHH-HhCCCcCEEeCCCCcCChHHHHHHHHHH
Confidence            3578899999988765443  256788999999999987632    22222 2578999999999988754443332 23


Q ss_pred             C----CCCeeecccccccc----cccccccCCCCCcEEECCCCccCCcCCCChhhhhhccCCCCCCEEEccCCeeeeecc
Q 046712          250 T----NLQGLEINRNLFSG----KVSINFSRLQNLSRLNLGENNLGTGTTNDLDFITLLTNCTKLEVLDLHSNRFGGVLP  321 (566)
Q Consensus       250 ~----~L~~L~l~~~~~~~----~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~  321 (566)
                      +    +|++|++++|.+..    ..+..+..+++|++|++++|.+.......+. .......++|++|++++|.+.+...
T Consensus        81 ~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~-~~l~~~~~~L~~L~L~~n~l~~~~~  159 (461)
T 1z7x_W           81 QTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLC-EGLLDPQCRLEKLQLEYCSLSAASC  159 (461)
T ss_dssp             CSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHH-HHHTSTTCCCCEEECTTSCCBGGGH
T ss_pred             hhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHH-HHHhcCCCcceEEECCCCCCCHHHH
Confidence            3    69999999998874    3356678889999999999887543221111 0112345689999999998876543


Q ss_pred             hhHhh---hccCCcEEEccCCCCCCCcchhhh-----ccCCCCeecccCCccccc----ccccccCCCCCCEEEccCCcc
Q 046712          322 FSLAN---LSTTMTEIAIGSNQISDTIPDVIA-----NLVNLNALGVESNQLAGT----IPLAIGELKSIQILFLNENFL  389 (566)
Q Consensus       322 ~~~~~---~~~~L~~L~l~~~~~~~~~~~~~~-----~l~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~n~~  389 (566)
                      ..+..   ..+.|++|++++|.+....+..+.     ..++|++|++++|.+++.    .+..+..+++|++|++++|.+
T Consensus       160 ~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l  239 (461)
T 1z7x_W          160 EPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKL  239 (461)
T ss_dssp             HHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBC
T ss_pred             HHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcC
Confidence            32222   237899999999987654333332     256899999999988754    355677789999999999988


Q ss_pred             cccC-----CccccCCCCCCeEeccCcccccc----CCCCCcCCCCCcEEEccCCcceeccchhhhhh----cccceEEE
Q 046712          390 RGTI-----PSSLGNLTLLTQLILEVNNLQGK----IPPSNGNCQNLILLTTRKNKLSGIVPRQLLRI----ITLSVLLD  456 (566)
Q Consensus       390 ~~~~-----~~~~~~~~~L~~L~l~~~~l~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~----~~~l~~L~  456 (566)
                      .+..     +..+..+++|++|++++|.++..    ++..+..+++|++|++++|.+.+..+..+...    .+.++.|+
T Consensus       240 ~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~  319 (461)
T 1z7x_W          240 GDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLW  319 (461)
T ss_dssp             HHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEE
T ss_pred             ChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeE
Confidence            6432     22233578999999999988753    45556678999999999998876555555443    23568999


Q ss_pred             ccCCccccc----CCcCccCCCCCCEEeCccccccccCCccccC-----CCCCcEEeCCCCcccc----cCCcCCcCCCC
Q 046712          457 LSDNLLSGH----FPTKVGNLKNLVSLDISSNMFSGEIPTTLGG-----CTSLEYLGMQDNSFTI----SIPSTLSSLKS  523 (566)
Q Consensus       457 l~~~~~~~~----~~~~~~~~~~L~~L~ls~~~l~~~~~~~~~~-----~~~L~~L~L~~n~~~~----~~~~~l~~l~~  523 (566)
                      +++|.+.+.    .+..+..+++|++|++++|.+.+..+..+..     .++|++|++++|.+++    .++.++..+++
T Consensus       320 L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~  399 (461)
T 1z7x_W          320 VKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHS  399 (461)
T ss_dssp             CTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCC
T ss_pred             cCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCC
Confidence            999988765    3344567789999999999887654443432     6789999999998886    56777888899


Q ss_pred             CCEEeCCCCccccccCcccc-----ccccCceeecccCcCcc
Q 046712          524 ITELDLSRNNLSGHIPQYLE-----NLSFLLFLNMSYNHFEG  560 (566)
Q Consensus       524 L~~L~l~~n~~~~~~~~~l~-----~l~~L~~L~l~~n~~~~  560 (566)
                      |++|++++|++.+.....+.     ....|+.|++.++.+..
T Consensus       400 L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~~  441 (461)
T 1z7x_W          400 LRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSE  441 (461)
T ss_dssp             CCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCH
T ss_pred             ccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccccCH
Confidence            99999999988754222221     23357777777766554

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.97  E-value=1.3e-28  Score=238.58  Aligned_cols=293  Identities=21%  Similarity=0.247  Sum_probs=164.0

Q ss_pred             CCCEEecCCCcccccCCcccCCCCCCCEEeCCCCcCCCcCccccccCCCCcEEEcCCCcCCCCcchhccCCCCCCEEecc
Q 046712           59 FLRSINLPNNSFRGKIPHEVGNLFRLQNLTLTNNYFLGKILTDLSHCSNLMKFEASNNKLEGEIPVKISNLLMLQILNIA  138 (566)
Q Consensus        59 ~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~  138 (566)
                      +++.++++++.++ .+|..+.  ++|++|++++|.+....+..|.++++|++|++++|.+++..|..+.++++|++|+++
T Consensus        34 ~l~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  110 (332)
T 2ft3_A           34 HLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS  110 (332)
T ss_dssp             ETTEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred             cCCEEECCCCCcc-ccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence            4555555555554 3443332  355555555555554444455555555555555555554445555555555555555


Q ss_pred             cccCCCCCCccccCCCCCCEEEccCCcCcccCCcccccCCcccEeeccccccee--cCC-cccCcccCceEecccccccc
Q 046712          139 ENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVAYNQFSG--MIP-PIYNISSLQYIFIHTNRFHG  215 (566)
Q Consensus       139 ~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~--~~~-~l~~~~~L~~L~l~~~~~~~  215 (566)
                      +|.+. .+|..+.  ++|++|++++|.+....+..+..+++|+.|++++|.+..  ..+ .+..+ +|++|++++|.++ 
T Consensus       111 ~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~-  185 (332)
T 2ft3_A          111 KNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLT-  185 (332)
T ss_dssp             SSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCS-
T ss_pred             CCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCC-
Confidence            55555 3443333  455666666555554434445555666666665555532  222 23333 5666666666555 


Q ss_pred             cCCCCCCCCCCCCcEEEcccccccccCcccccccCCCCeeecccccccccccccccCCCCCcEEECCCCccCCcCCCChh
Q 046712          216 SVPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINRNLFSGKVSINFSRLQNLSRLNLGENNLGTGTTNDLD  295 (566)
Q Consensus       216 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~  295 (566)
                      .+|...   .++|++|++++|.+++..+..+..+++|+.|++++|.+....+..+..+++|++|++++|.+...+.    
T Consensus       186 ~l~~~~---~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~----  258 (332)
T 2ft3_A          186 GIPKDL---PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPA----  258 (332)
T ss_dssp             SCCSSS---CSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCCT----
T ss_pred             ccCccc---cCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeecCh----
Confidence            244332   2567777777777776666667777777777777777776666667777777777777777764433    


Q ss_pred             hhhhccCCCCCCEEEccCCeeeeecchhHhhhccCCcEEEccCCCCCCCcchhhhccCCCCeecccCCccc--ccccccc
Q 046712          296 FITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQISDTIPDVIANLVNLNALGVESNQLA--GTIPLAI  373 (566)
Q Consensus       296 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~--~~~~~~~  373 (566)
                         .+..+++|+.|++++|.+++..+..+....                 +  ....+.|+.|++++|.+.  +..+.++
T Consensus       259 ---~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~-----------------~--~~~~~~l~~L~l~~N~~~~~~~~~~~~  316 (332)
T 2ft3_A          259 ---GLPDLKLLQVVYLHTNNITKVGVNDFCPVG-----------------F--GVKRAYYNGISLFNNPVPYWEVQPATF  316 (332)
T ss_dssp             ---TGGGCTTCCEEECCSSCCCBCCTTSSSCSS-----------------C--CSSSCCBSEEECCSSSSCGGGSCGGGG
T ss_pred             ---hhhcCccCCEEECCCCCCCccChhHccccc-----------------c--ccccccccceEeecCcccccccCcccc
Confidence               255667777777777777644433322110                 0  011345666666666654  3445556


Q ss_pred             cCCCCCCEEEccCCc
Q 046712          374 GELKSIQILFLNENF  388 (566)
Q Consensus       374 ~~~~~L~~L~l~~n~  388 (566)
                      ..+++|+.+++++|.
T Consensus       317 ~~l~~L~~l~l~~n~  331 (332)
T 2ft3_A          317 RCVTDRLAIQFGNYK  331 (332)
T ss_dssp             TTBCCSTTEEC----
T ss_pred             cccchhhhhhccccc
Confidence            666666666666653

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.97  E-value=2.5e-28  Score=236.37  Aligned_cols=289  Identities=19%  Similarity=0.228  Sum_probs=177.9

Q ss_pred             CCcEEEcccccccccCcccccccCCCCeeecccccccccccccccCCCCCcEEECCCCccCCcCCCChhhhhhccCCCCC
Q 046712          227 NLRYFSISGNNLTGSLQDSLSNATNLQGLEINRNLFSGKVSINFSRLQNLSRLNLGENNLGTGTTNDLDFITLLTNCTKL  306 (566)
Q Consensus       227 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L  306 (566)
                      +++.++++++.++. .+..+  .+.++.|++++|.+....+..+..+++|++|++++|.+....+      ..+..+++|
T Consensus        32 ~l~~l~~~~~~l~~-lp~~~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~------~~~~~l~~L  102 (330)
T 1xku_A           32 HLRVVQCSDLGLEK-VPKDL--PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISP------GAFAPLVKL  102 (330)
T ss_dssp             ETTEEECTTSCCCS-CCCSC--CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCT------TTTTTCTTC
T ss_pred             CCeEEEecCCCccc-cCccC--CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCH------HHhcCCCCC
Confidence            56667766666553 22222  2466677777776665555556666667777776666665443      335566666


Q ss_pred             CEEEccCCeeeeecchhHhhhccCCcEEEccCCCCCCCcchhhhccCCCCeecccCCcccccccccccCCCCCCEEEccC
Q 046712          307 EVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQISDTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSIQILFLNE  386 (566)
Q Consensus       307 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~  386 (566)
                      ++|++++|.+.. .|..+   .+.|+                        +|++++|.+.+..+..+..+++|++|++++
T Consensus       103 ~~L~Ls~n~l~~-l~~~~---~~~L~------------------------~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~  154 (330)
T 1xku_A          103 ERLYLSKNQLKE-LPEKM---PKTLQ------------------------ELRVHENEITKVRKSVFNGLNQMIVVELGT  154 (330)
T ss_dssp             CEEECCSSCCSB-CCSSC---CTTCC------------------------EEECCSSCCCBBCHHHHTTCTTCCEEECCS
T ss_pred             CEEECCCCcCCc-cChhh---ccccc------------------------EEECCCCcccccCHhHhcCCccccEEECCC
Confidence            666666666552 22211   13444                        444444444444444444445555555555


Q ss_pred             Ccccc--cCCccccCCCCCCeEeccCccccccCCCCCcCCCCCcEEEccCCcceeccchhhhhhcccceEEEccCCcccc
Q 046712          387 NFLRG--TIPSSLGNLTLLTQLILEVNNLQGKIPPSNGNCQNLILLTTRKNKLSGIVPRQLLRIITLSVLLDLSDNLLSG  464 (566)
Q Consensus       387 n~~~~--~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~  464 (566)
                      |.+..  ..+..+..+++|++|++++|.+. .+|..+.  ++|++|++++|.+.+..+..+..+..+ +.|++++|.+.+
T Consensus       155 n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L-~~L~Ls~n~l~~  230 (330)
T 1xku_A          155 NPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNL-AKLGLSFNSISA  230 (330)
T ss_dssp             SCCCGGGBCTTGGGGCTTCCEEECCSSCCC-SCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTC-CEEECCSSCCCE
T ss_pred             CcCCccCcChhhccCCCCcCEEECCCCccc-cCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCC-CEEECCCCcCce
Confidence            54432  23334444555555555555544 2222221  455555555555555444444444443 666666666666


Q ss_pred             cCCcCccCCCCCCEEeCccccccccCCccccCCCCCcEEeCCCCcccccCCcCCcC------CCCCCEEeCCCCcccc--
Q 046712          465 HFPTKVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTISIPSTLSS------LKSITELDLSRNNLSG--  536 (566)
Q Consensus       465 ~~~~~~~~~~~L~~L~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~------l~~L~~L~l~~n~~~~--  536 (566)
                      ..+..+..+++|++|++++|++. .+|..+..+++|++|++++|.++...+..|..      .+.|+.|++++|++..  
T Consensus       231 ~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~  309 (330)
T 1xku_A          231 VDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWE  309 (330)
T ss_dssp             ECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGG
T ss_pred             eChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccc
Confidence            66667788899999999999998 78888889999999999999998766666643      3789999999998864  


Q ss_pred             ccCccccccccCceeecccCc
Q 046712          537 HIPQYLENLSFLLFLNMSYNH  557 (566)
Q Consensus       537 ~~~~~l~~l~~L~~L~l~~n~  557 (566)
                      ..|..+..+++|+.+++++|+
T Consensus       310 i~~~~f~~~~~l~~l~L~~N~  330 (330)
T 1xku_A          310 IQPSTFRCVYVRAAVQLGNYK  330 (330)
T ss_dssp             SCGGGGTTCCCGGGEEC----
T ss_pred             cCccccccccceeEEEecccC
Confidence            566788999999999999985

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.96  E-value=3.7e-28  Score=235.16  Aligned_cols=275  Identities=20%  Similarity=0.202  Sum_probs=156.2

Q ss_pred             CCCCEEecCCCcccccCCcccCCCCCCCEEeCCCCcCCCcCccccccCCCCcEEEcCCCcCCCCcchhccCCCCCCEEec
Q 046712           58 NFLRSINLPNNSFRGKIPHEVGNLFRLQNLTLTNNYFLGKILTDLSHCSNLMKFEASNNKLEGEIPVKISNLLMLQILNI  137 (566)
Q Consensus        58 ~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l  137 (566)
                      +++++|++++|.+++..+.+|.++++|++|++++|.+++..+..|.++++|++|++++|.++ .+|..+.  ++|++|++
T Consensus        52 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~--~~L~~L~l  128 (330)
T 1xku_A           52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMP--KTLQELRV  128 (330)
T ss_dssp             TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSCC--TTCCEEEC
T ss_pred             CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCC-ccChhhc--ccccEEEC
Confidence            45666666666665444445566666666666666655555555666666666666666555 3333332  45555555


Q ss_pred             ccccCCCCCCccccCCCCCCEEEccCCcCcc--cCCcccccCCcccEeecccccceecCCcccCcccCceEecccccccc
Q 046712          138 AENHLKGQLPASIGNLSALQEIDVRGNRLGG--RIPSTISHVRNLISFNVAYNQFSGMIPPIYNISSLQYIFIHTNRFHG  215 (566)
Q Consensus       138 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~--~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~  215 (566)
                      ++|.+.+..+..+..+++|++|++++|.+..  ..+..+..+++|+.|++++|                       .++ 
T Consensus       129 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n-----------------------~l~-  184 (330)
T 1xku_A          129 HENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADT-----------------------NIT-  184 (330)
T ss_dssp             CSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSS-----------------------CCC-
T ss_pred             CCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCC-----------------------ccc-
Confidence            5555554444445555555555555555532  33444445555555555444                       443 


Q ss_pred             cCCCCCCCCCCCCcEEEcccccccccCcccccccCCCCeeecccccccccccccccCCCCCcEEECCCCccCCcCCCChh
Q 046712          216 SVPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINRNLFSGKVSINFSRLQNLSRLNLGENNLGTGTTNDLD  295 (566)
Q Consensus       216 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~  295 (566)
                      .++...   .++|++|++++|.+++..+..+..+++|+.|++++|.+....+..+..+++|++|++++|.+...+.    
T Consensus       185 ~l~~~~---~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~----  257 (330)
T 1xku_A          185 TIPQGL---PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPG----  257 (330)
T ss_dssp             SCCSSC---CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCT----
T ss_pred             cCCccc---cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccCCh----
Confidence            233222   2567777777777766666667777777777777777776666567777777777777777664432    


Q ss_pred             hhhhccCCCCCCEEEccCCeeeeecchhHhhhccCCcEEEccCCCCCCCcchhhhccCCCCeecccCCcccc--cccccc
Q 046712          296 FITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQISDTIPDVIANLVNLNALGVESNQLAG--TIPLAI  373 (566)
Q Consensus       296 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--~~~~~~  373 (566)
                         .+..+++|+.|++++|.+++..+..+...                   ......+.++.+++++|.+..  ..+..+
T Consensus       258 ---~l~~l~~L~~L~l~~N~i~~~~~~~f~~~-------------------~~~~~~~~l~~l~l~~N~~~~~~i~~~~f  315 (330)
T 1xku_A          258 ---GLADHKYIQVVYLHNNNISAIGSNDFCPP-------------------GYNTKKASYSGVSLFSNPVQYWEIQPSTF  315 (330)
T ss_dssp             ---TTTTCSSCCEEECCSSCCCCCCTTSSSCS-------------------SCCTTSCCCSEEECCSSSSCGGGSCGGGG
T ss_pred             ---hhccCCCcCEEECCCCcCCccChhhcCCc-------------------ccccccccccceEeecCcccccccCcccc
Confidence               24566777777777777764433322110                   001123556666666666542  344566


Q ss_pred             cCCCCCCEEEccCCc
Q 046712          374 GELKSIQILFLNENF  388 (566)
Q Consensus       374 ~~~~~L~~L~l~~n~  388 (566)
                      ..+++++.+++++|+
T Consensus       316 ~~~~~l~~l~L~~N~  330 (330)
T 1xku_A          316 RCVYVRAAVQLGNYK  330 (330)
T ss_dssp             TTCCCGGGEEC----
T ss_pred             ccccceeEEEecccC
Confidence            666777777776663

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.96  E-value=3.3e-30  Score=248.23  Aligned_cols=256  Identities=18%  Similarity=0.233  Sum_probs=167.1

Q ss_pred             CcccCC-CCCCCCCCC----cCCCCCCcccccccCC--------CCCcEEEEEcCCCccccccCccCcCCCCCCEEecCC
Q 046712            1 MKSQLQ-DPLGVTSSW----NNSINLCQWTGVTCGH--------RRQRVTGLDLRHQSVGGVLSPFVGNLNFLRSINLPN   67 (566)
Q Consensus         1 ~~~~~~-~~~~~~~~~----~~~~~~~~~~~~~~~~--------~~~~~~~l~l~~~~i~~~~~~~~~~l~~L~~L~ls~   67 (566)
                      |++++. ||.+|.+.|    .....+|.|.|+.|..        ...++++|+++++.++ .+|..+.++++|++|++++
T Consensus        35 ~k~~~~~~~~~~~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~  113 (328)
T 4fcg_A           35 WQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDA  113 (328)
T ss_dssp             HHHHHHHCCTTHHHHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEES
T ss_pred             HHHhccCCchhhhhhhcccccccccccccCCcchhhhHHHHhcccccceeEEEccCCCch-hcChhhhhCCCCCEEECCC
Confidence            345564 888999999    4667889999998842        2367888888888887 5566677788888888888


Q ss_pred             CcccccCCcccCCCCCCCEEeCCCCcCCCcCccccccCCCCcEEEcCCCcCCCCcchhccC---------CCCCCEEecc
Q 046712           68 NSFRGKIPHEVGNLFRLQNLTLTNNYFLGKILTDLSHCSNLMKFEASNNKLEGEIPVKISN---------LLMLQILNIA  138 (566)
Q Consensus        68 ~~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~---------l~~L~~L~l~  138 (566)
                      |.++ .+|..+.++++|++|++++|.++ ..+..+.++++|++|++++|.+.+.+|..+..         +++|++|+++
T Consensus       114 n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~  191 (328)
T 4fcg_A          114 AGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLE  191 (328)
T ss_dssp             SCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEE
T ss_pred             CCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECc
Confidence            8887 77777888888888888888777 55667778888888888887666666665543         5666666666


Q ss_pred             cccCCCCCCccccCCCCCCEEEccCCcCcccCCcccccCCcccEeecccccceecCCcccCcccCceEecccccccccCC
Q 046712          139 ENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVAYNQFSGMIPPIYNISSLQYIFIHTNRFHGSVP  218 (566)
Q Consensus       139 ~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~  218 (566)
                      +|.+. .+|..+..+++|++|++++|.+. .+|..+..+++|+.|++++|.+.+.                       +|
T Consensus       192 ~n~l~-~lp~~l~~l~~L~~L~L~~N~l~-~l~~~l~~l~~L~~L~Ls~n~~~~~-----------------------~p  246 (328)
T 4fcg_A          192 WTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRN-----------------------YP  246 (328)
T ss_dssp             EECCC-CCCGGGGGCTTCCEEEEESSCCC-CCCGGGGGCTTCCEEECTTCTTCCB-----------------------CC
T ss_pred             CCCcC-cchHhhcCCCCCCEEEccCCCCC-cCchhhccCCCCCEEECcCCcchhh-----------------------hH
Confidence            66665 55555666666666666666655 3444555555666665555544433                       33


Q ss_pred             CCCCCCCCCCcEEEcccccccccCcccccccCCCCeeecccccccccccccccCCCCCcEEECCCCc
Q 046712          219 LDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINRNLFSGKVSINFSRLQNLSRLNLGENN  285 (566)
Q Consensus       219 ~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~  285 (566)
                      .... .+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++++.+++..+.
T Consensus       247 ~~~~-~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~  312 (328)
T 4fcg_A          247 PIFG-GRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHL  312 (328)
T ss_dssp             CCTT-CCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGG
T ss_pred             HHhc-CCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHH
Confidence            3322 44555555555554444445455555555555555555555555555555555555555443

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.96  E-value=1.8e-28  Score=237.49  Aligned_cols=288  Identities=22%  Similarity=0.250  Sum_probs=171.5

Q ss_pred             CCcEEEcccccccccCcccccccCCCCeeecccccccccccccccCCCCCcEEECCCCccCCcCCCChhhhhhccCCCCC
Q 046712          227 NLRYFSISGNNLTGSLQDSLSNATNLQGLEINRNLFSGKVSINFSRLQNLSRLNLGENNLGTGTTNDLDFITLLTNCTKL  306 (566)
Q Consensus       227 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L  306 (566)
                      .++.++++++.++. .+..+  .++++.|++++|.+....+..+..+++|++|++++|.+....+      ..+..+++|
T Consensus        34 ~l~~l~~~~~~l~~-ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~------~~~~~l~~L  104 (332)
T 2ft3_A           34 HLRVVQCSDLGLKA-VPKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHE------KAFSPLRKL  104 (332)
T ss_dssp             ETTEEECCSSCCSS-CCSCC--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECG------GGSTTCTTC
T ss_pred             cCCEEECCCCCccc-cCCCC--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCH------hHhhCcCCC
Confidence            46666666665552 22222  2456666666666655555556666666666666666554433      345556666


Q ss_pred             CEEEccCCeeeeecchhHhhhccCCcEEEccCCCCCCCcchhhhccCCCCeecccCCcccc--cccccccCCCCCCEEEc
Q 046712          307 EVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQISDTIPDVIANLVNLNALGVESNQLAG--TIPLAIGELKSIQILFL  384 (566)
Q Consensus       307 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l  384 (566)
                      ++|++++|.+.. .|..+.   ++|++|++++|.+....+..+..+++|++|++++|.++.  ..+..+..+ +|++|++
T Consensus       105 ~~L~L~~n~l~~-l~~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l  179 (332)
T 2ft3_A          105 QKLYISKNHLVE-IPPNLP---SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRI  179 (332)
T ss_dssp             CEEECCSSCCCS-CCSSCC---TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBC
T ss_pred             CEEECCCCcCCc-cCcccc---ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEEC
Confidence            666666665552 222111   445555555555544434444455555555555554432  233334333 4555555


Q ss_pred             cCCcccccCCccccCCCCCCeEeccCccccccCCCCCcCCCCCcEEEccCCcceeccchhhhhhcccceEEEccCCcccc
Q 046712          385 NENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSNGNCQNLILLTTRKNKLSGIVPRQLLRIITLSVLLDLSDNLLSG  464 (566)
Q Consensus       385 ~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~  464 (566)
                      ++|.+++ +|..+.  ++|++|++++|.+.+..+..+..+++|                         +.|++++|.+.+
T Consensus       180 ~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L-------------------------~~L~L~~N~l~~  231 (332)
T 2ft3_A          180 SEAKLTG-IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKL-------------------------YRLGLGHNQIRM  231 (332)
T ss_dssp             CSSBCSS-CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTC-------------------------SCCBCCSSCCCC
T ss_pred             cCCCCCc-cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCC-------------------------CEEECCCCcCCc
Confidence            5555442 222221  344444444444443333444444444                         555555555555


Q ss_pred             cCCcCccCCCCCCEEeCccccccccCCccccCCCCCcEEeCCCCcccccCCcCCcC------CCCCCEEeCCCCccc--c
Q 046712          465 HFPTKVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTISIPSTLSS------LKSITELDLSRNNLS--G  536 (566)
Q Consensus       465 ~~~~~~~~~~~L~~L~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~------l~~L~~L~l~~n~~~--~  536 (566)
                      ..+..+..+++|++|++++|++. .+|..+..+++|++|++++|.++...+..|..      .+.|+.|++++|++.  .
T Consensus       232 ~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~  310 (332)
T 2ft3_A          232 IENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWE  310 (332)
T ss_dssp             CCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGG
T ss_pred             CChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccc
Confidence            55556778889999999999998 78888889999999999999998766666654      367899999999887  5


Q ss_pred             ccCccccccccCceeecccCc
Q 046712          537 HIPQYLENLSFLLFLNMSYNH  557 (566)
Q Consensus       537 ~~~~~l~~l~~L~~L~l~~n~  557 (566)
                      ..|..+..+++|+.+++++|+
T Consensus       311 ~~~~~~~~l~~L~~l~l~~n~  331 (332)
T 2ft3_A          311 VQPATFRCVTDRLAIQFGNYK  331 (332)
T ss_dssp             SCGGGGTTBCCSTTEEC----
T ss_pred             cCcccccccchhhhhhccccc
Confidence            677888999999999999884

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.96  E-value=3.8e-31  Score=277.99  Aligned_cols=452  Identities=15%  Similarity=0.105  Sum_probs=231.5

Q ss_pred             CCCcccccccCCCCCcEEEEEcCCCccccccCccCcCCCCCCEEecCCCccc---ccCCcccC------------CCCCC
Q 046712           20 NLCQWTGVTCGHRRQRVTGLDLRHQSVGGVLSPFVGNLNFLRSINLPNNSFR---GKIPHEVG------------NLFRL   84 (566)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~l~l~~~~i~~~~~~~~~~l~~L~~L~ls~~~l~---~~~~~~~~------------~l~~L   84 (566)
                      -|.+|.++.+...    +.+.+.++ ....++..+..+++|++|+++++...   +.+|..+.            .+++|
T Consensus        40 vck~W~~~~~~~~----~~l~~~~~-~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L  114 (592)
T 3ogk_B           40 VCRRWFKIDSETR----EHVTMALC-YTATPDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQL  114 (592)
T ss_dssp             SCHHHHHHHHHHC----CEEEESCG-GGSCHHHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTC
T ss_pred             HhHHHHHhhhccc----cEEEEeec-cccChHHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCC
Confidence            3448988865322    33444332 23344556678899999999886431   12332222            57788


Q ss_pred             CEEeCCCCcCCCcCcccccc-CCC-CcEEEcCCCc-CCC-CcchhccCCCCCCEEecccccCCCC----CCccccCCCCC
Q 046712           85 QNLTLTNNYFLGKILTDLSH-CSN-LMKFEASNNK-LEG-EIPVKISNLLMLQILNIAENHLKGQ----LPASIGNLSAL  156 (566)
Q Consensus        85 ~~L~l~~~~l~~~~~~~~~~-l~~-L~~L~l~~~~-~~~-~~~~~l~~l~~L~~L~l~~~~~~~~----~~~~~~~l~~L  156 (566)
                      ++|++++|.+++..+..+.. +++ |++|++++|. +.. .++.....+++|++|++++|.+.+.    ++.....+++|
T Consensus       115 ~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L  194 (592)
T 3ogk_B          115 KSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSL  194 (592)
T ss_dssp             CEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCC
T ss_pred             CeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCc
Confidence            88888888766555555554 344 8888887775 211 1122234677888888888776543    23344567788


Q ss_pred             CEEEccCCcCc----ccCCcccccCCcccEeecccccceecCCcccCcccCceEeccccccc---ccCCCCCCCCCCCCc
Q 046712          157 QEIDVRGNRLG----GRIPSTISHVRNLISFNVAYNQFSGMIPPIYNISSLQYIFIHTNRFH---GSVPLDNGVNLPNLR  229 (566)
Q Consensus       157 ~~L~l~~~~i~----~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~---~~~~~~~~~~~~~L~  229 (566)
                      ++|++++|.+.    ..++..+..+++|+.|++++|.+.+....+..+++|++|.++.....   ...... ...+++|+
T Consensus       195 ~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-l~~~~~L~  273 (592)
T 3ogk_B          195 EVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMN-LVFPRKLC  273 (592)
T ss_dssp             CEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSC-CCCCTTCC
T ss_pred             cEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHH-hhcccccc
Confidence            88888877775    22333445677788888777766654445556677777776542211   011111 11344555


Q ss_pred             EEEcccccccccCcccccccCCCCeeecccccccccccccccCCCCCcEEECCCCccCCcCCCChhhhhhccCCCCCCEE
Q 046712          230 YFSISGNNLTGSLQDSLSNATNLQGLEINRNLFSGKVSINFSRLQNLSRLNLGENNLGTGTTNDLDFITLLTNCTKLEVL  309 (566)
Q Consensus       230 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L  309 (566)
                      .++++++... ..+..+..+++|++|++++|.++....                             ...+..+++|+.|
T Consensus       274 ~L~l~~~~~~-~l~~~~~~~~~L~~L~Ls~~~l~~~~~-----------------------------~~~~~~~~~L~~L  323 (592)
T 3ogk_B          274 RLGLSYMGPN-EMPILFPFAAQIRKLDLLYALLETEDH-----------------------------CTLIQKCPNLEVL  323 (592)
T ss_dssp             EEEETTCCTT-TGGGGGGGGGGCCEEEETTCCCCHHHH-----------------------------HHHHTTCTTCCEE
T ss_pred             ccCccccchh-HHHHHHhhcCCCcEEecCCCcCCHHHH-----------------------------HHHHHhCcCCCEE
Confidence            5555443211 223333444445555554444322111                             1223444555555


Q ss_pred             EccCCeeeeecchhHhhhccCCcEEEccC----------C-CCCCC-cchhhhccCCCCeecccCCcccccccccccC-C
Q 046712          310 DLHSNRFGGVLPFSLANLSTTMTEIAIGS----------N-QISDT-IPDVIANLVNLNALGVESNQLAGTIPLAIGE-L  376 (566)
Q Consensus       310 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~----------~-~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~-~  376 (566)
                      +++ +.+.+.....+....++|++|++.+          | .+++. .......+++|++|+++.+.+++.....+.. +
T Consensus       324 ~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~  402 (592)
T 3ogk_B          324 ETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYL  402 (592)
T ss_dssp             EEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHC
T ss_pred             ecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhC
Confidence            554 2222222222222234455555552          2 22211 1112334566666666555555443333433 5


Q ss_pred             CCCCEEEcc----CCccccc-----CCccccCCCCCCeEeccCcc--ccccCCCCCc-CCCCCcEEEccCCcceeccchh
Q 046712          377 KSIQILFLN----ENFLRGT-----IPSSLGNLTLLTQLILEVNN--LQGKIPPSNG-NCQNLILLTTRKNKLSGIVPRQ  444 (566)
Q Consensus       377 ~~L~~L~l~----~n~~~~~-----~~~~~~~~~~L~~L~l~~~~--l~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~  444 (566)
                      ++|+.|+++    .+.+++.     ++..+..+++|++|+++.|.  +++.....+. .+++|++|++++|.+++.....
T Consensus       403 ~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~  482 (592)
T 3ogk_B          403 KNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLME  482 (592)
T ss_dssp             CSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHH
T ss_pred             CCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHH
Confidence            566666664    3334321     12224445666666665432  3322222222 2566666666666655433333


Q ss_pred             hhhhcccceEEEccCCcccccCCc-CccCCCCCCEEeCccccccccCCccc-cCCCCCcEEeCCCC
Q 046712          445 LLRIITLSVLLDLSDNLLSGHFPT-KVGNLKNLVSLDISSNMFSGEIPTTL-GGCTSLEYLGMQDN  508 (566)
Q Consensus       445 ~~~~~~~l~~L~l~~~~~~~~~~~-~~~~~~~L~~L~ls~~~l~~~~~~~~-~~~~~L~~L~L~~n  508 (566)
                      +....+.++.|++++|.+++.... .+..+++|+.|++++|++++.....+ ..++.+....+..+
T Consensus       483 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~~~~p~l~~~~~~~~  548 (592)
T 3ogk_B          483 FSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPSR  548 (592)
T ss_dssp             HHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGGGGCCTTEEEEEECCC
T ss_pred             HHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHHHHHHHHhCCCcEEEEecCc
Confidence            323333346666766665433222 23457778888888888765433333 35666666655544

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.95  E-value=7.8e-27  Score=223.39  Aligned_cols=275  Identities=19%  Similarity=0.183  Sum_probs=186.3

Q ss_pred             cEEECCCCccCCcCCCChhhhhhccCCCCCCEEEccCCeeeeecchhHhhhccCCcEEEccCCCCCCC--cchhhhccCC
Q 046712          277 SRLNLGENNLGTGTTNDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQISDT--IPDVIANLVN  354 (566)
Q Consensus       277 ~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~~~l~~  354 (566)
                      +.++.+++.++..+..         -.++|+.|++++|.+....+..+.. .+.|++|++++|.+...  .+..+..+++
T Consensus        10 ~~l~c~~~~l~~ip~~---------~~~~l~~L~L~~n~l~~i~~~~~~~-l~~L~~L~L~~n~l~~~~~~~~~~~~~~~   79 (306)
T 2z66_A           10 TEIRCNSKGLTSVPTG---------IPSSATRLELESNKLQSLPHGVFDK-LTQLTKLSLSSNGLSFKGCCSQSDFGTTS   79 (306)
T ss_dssp             TEEECCSSCCSSCCSC---------CCTTCCEEECCSSCCCCCCTTTTTT-CTTCSEEECCSSCCCEEEEEEHHHHSCSC
T ss_pred             CEEEcCCCCcccCCCC---------CCCCCCEEECCCCccCccCHhHhhc-cccCCEEECCCCccCcccCcccccccccc
Confidence            4677777776665441         2257888888888877443333333 47888888888877632  2455667788


Q ss_pred             CCeecccCCcccccccccccCCCCCCEEEccCCcccccCC-ccccCCCCCCeEeccCccccccCCCCCcCCCCCcEEEcc
Q 046712          355 LNALGVESNQLAGTIPLAIGELKSIQILFLNENFLRGTIP-SSLGNLTLLTQLILEVNNLQGKIPPSNGNCQNLILLTTR  433 (566)
Q Consensus       355 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~-~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~  433 (566)
                      |++|++++|.+.+ .+..+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+.+..+..+..+++|++|+++
T Consensus        80 L~~L~Ls~n~i~~-l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  158 (306)
T 2z66_A           80 LKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMA  158 (306)
T ss_dssp             CCEEECCSCSEEE-EEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECT
T ss_pred             cCEEECCCCcccc-ChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECC
Confidence            8888888888773 45557778888888888888774443 467778888888888888877777777788888888888


Q ss_pred             CCccee-ccchhhhhhcccceEEEccCCcccccCCcCccCCCCCCEEeCccccccccCCccccCCCCCcEEeCCCCcccc
Q 046712          434 KNKLSG-IVPRQLLRIITLSVLLDLSDNLLSGHFPTKVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTI  512 (566)
Q Consensus       434 ~~~~~~-~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~~~~  512 (566)
                      +|.+.+ ..+..+..+..+ +.|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++
T Consensus       159 ~n~l~~~~~~~~~~~l~~L-~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~  237 (306)
T 2z66_A          159 GNSFQENFLPDIFTELRNL-TFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMT  237 (306)
T ss_dssp             TCEEGGGEECSCCTTCTTC-CEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCB
T ss_pred             CCccccccchhHHhhCcCC-CEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcc
Confidence            887765 345445444444 777777777776666777777777777777777775555567777777777777777776


Q ss_pred             cCCcCCcCCC-CCCEEeCCCCccccccC--ccccccccCceeecccCcCcccCC
Q 046712          513 SIPSTLSSLK-SITELDLSRNNLSGHIP--QYLENLSFLLFLNMSYNHFEGKVP  563 (566)
Q Consensus       513 ~~~~~l~~l~-~L~~L~l~~n~~~~~~~--~~l~~l~~L~~L~l~~n~~~~~~p  563 (566)
                      ..+..+..++ +|++|++++|++...-+  ....-+...+.+.+..+.+....|
T Consensus       238 ~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~~C~~p  291 (306)
T 2z66_A          238 SKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATP  291 (306)
T ss_dssp             CSSSSCCCCCTTCCEEECTTCCEECSGGGHHHHHHHHHTGGGBSCGGGCBEEES
T ss_pred             cCHHHHHhhhccCCEEEccCCCeecccChHHHHHHHHhhhhhhccccccccCCc
Confidence            6777777764 77777777777764311  112223344455555555555444

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.95  E-value=7e-30  Score=268.34  Aligned_cols=398  Identities=13%  Similarity=0.107  Sum_probs=262.8

Q ss_pred             CcEEEEEcCCCccc---cccCccC------------cCCCCCCEEecCCCcccccCCcccCC-CC-CCCEEeCCCCc-CC
Q 046712           34 QRVTGLDLRHQSVG---GVLSPFV------------GNLNFLRSINLPNNSFRGKIPHEVGN-LF-RLQNLTLTNNY-FL   95 (566)
Q Consensus        34 ~~~~~l~l~~~~i~---~~~~~~~------------~~l~~L~~L~ls~~~l~~~~~~~~~~-l~-~L~~L~l~~~~-l~   95 (566)
                      +++++|+++++...   +..|..+            ..+++|++|++++|.+++..+..+.. ++ +|++|++++|. +.
T Consensus        73 ~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~  152 (592)
T 3ogk_B           73 PNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFT  152 (592)
T ss_dssp             TTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEE
T ss_pred             CCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcC
Confidence            67999999885321   1222222            27899999999999887665555655 34 49999999986 22


Q ss_pred             Cc-CccccccCCCCcEEEcCCCcCCCC----cchhccCCCCCCEEecccccCC----CCCCccccCCCCCCEEEccCCcC
Q 046712           96 GK-ILTDLSHCSNLMKFEASNNKLEGE----IPVKISNLLMLQILNIAENHLK----GQLPASIGNLSALQEIDVRGNRL  166 (566)
Q Consensus        96 ~~-~~~~~~~l~~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~l~~~~~~----~~~~~~~~~l~~L~~L~l~~~~i  166 (566)
                      .. ......++++|++|++++|.+.+.    ++.....+++|++|+++.+.+.    +.++..+..+++|++|++++|.+
T Consensus       153 ~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~  232 (592)
T 3ogk_B          153 TDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEI  232 (592)
T ss_dssp             HHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBG
T ss_pred             HHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccH
Confidence            11 112234799999999999988655    3445567899999999999886    23445567899999999999988


Q ss_pred             cccCCcccccCCcccEeecccccce----ecCCcccCcccCceEecccccccccCCCCCCCCCCCCcEEEcccccccccC
Q 046712          167 GGRIPSTISHVRNLISFNVAYNQFS----GMIPPIYNISSLQYIFIHTNRFHGSVPLDNGVNLPNLRYFSISGNNLTGSL  242 (566)
Q Consensus       167 ~~~~~~~l~~l~~L~~L~l~~~~~~----~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~  242 (566)
                      . .++..+..+++|+.|+++.....    .....+..+++|+.+.+++.... .++... ..+++|++|++++|.++...
T Consensus       233 ~-~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~l~~~~-~~~~~L~~L~Ls~~~l~~~~  309 (592)
T 3ogk_B          233 L-ELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPN-EMPILF-PFAAQIRKLDLLYALLETED  309 (592)
T ss_dssp             G-GGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTT-TGGGGG-GGGGGCCEEEETTCCCCHHH
T ss_pred             H-HHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchh-HHHHHH-hhcCCCcEEecCCCcCCHHH
Confidence            7 46788899999999999864322    12225678889999998875322 333333 36889999999999876433


Q ss_pred             c-ccccccCCCCeeecccccccccccccccCCCCCcEEECCC-----------CccCCcCCCChhhhhhccCCCCCCEEE
Q 046712          243 Q-DSLSNATNLQGLEINRNLFSGKVSINFSRLQNLSRLNLGE-----------NNLGTGTTNDLDFITLLTNCTKLEVLD  310 (566)
Q Consensus       243 ~-~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~-----------~~~~~~~~~~~~~~~~l~~~~~L~~L~  310 (566)
                      . ..+..+++|+.|++.++............+++|++|++++           +.++..     ........+++|+.|+
T Consensus       310 ~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~-----~~~~l~~~~~~L~~L~  384 (592)
T 3ogk_B          310 HCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQR-----GLIALAQGCQELEYMA  384 (592)
T ss_dssp             HHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHH-----HHHHHHHHCTTCSEEE
T ss_pred             HHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHH-----HHHHHHhhCccCeEEE
Confidence            3 3467899999999984433333333346788999999983           233221     1223345688999999


Q ss_pred             ccCCeeeeecchhHhhhccCCcEEEcc----CCCCCCC-----cchhhhccCCCCeecccCCc--ccccccccc-cCCCC
Q 046712          311 LHSNRFGGVLPFSLANLSTTMTEIAIG----SNQISDT-----IPDVIANLVNLNALGVESNQ--LAGTIPLAI-GELKS  378 (566)
Q Consensus       311 l~~~~~~~~~~~~~~~~~~~L~~L~l~----~~~~~~~-----~~~~~~~l~~L~~L~l~~~~--~~~~~~~~~-~~~~~  378 (566)
                      ++.+.+++.....+....++|++|++.    .+.+++.     ++..+..+++|++|+++.|.  +++.....+ ..+++
T Consensus       385 l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~  464 (592)
T 3ogk_B          385 VYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPN  464 (592)
T ss_dssp             EEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTT
T ss_pred             eecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCcc
Confidence            988887766666666655788888886    3445542     23335567777777776543  443333333 23667


Q ss_pred             CCEEEccCCccccc-CCccccCCCCCCeEeccCccccccC-CCCCcCCCCCcEEEccCCccee
Q 046712          379 IQILFLNENFLRGT-IPSSLGNLTLLTQLILEVNNLQGKI-PPSNGNCQNLILLTTRKNKLSG  439 (566)
Q Consensus       379 L~~L~l~~n~~~~~-~~~~~~~~~~L~~L~l~~~~l~~~~-~~~~~~~~~L~~L~l~~~~~~~  439 (566)
                      |++|++++|.+++. ++..+..+++|++|++++|.+++.. +.....+++|++|++++|++++
T Consensus       465 L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~  527 (592)
T 3ogk_B          465 VRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASM  527 (592)
T ss_dssp             CCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCT
T ss_pred             ceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCH
Confidence            77777777776542 2333455666677766666654321 1222345556666666655543

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.95  E-value=8.1e-27  Score=227.94  Aligned_cols=285  Identities=16%  Similarity=0.172  Sum_probs=202.0

Q ss_pred             CCcCCCCCCcccccccCCCCCcEEEEEcCCCccccccCccCcCCCCCCEEecCCCcccccCCcccCCCCCCCEEeCCCCc
Q 046712           14 SWNNSINLCQWTGVTCGHRRQRVTGLDLRHQSVGGVLSPFVGNLNFLRSINLPNNSFRGKIPHEVGNLFRLQNLTLTNNY   93 (566)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~i~~~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~l~~~~   93 (566)
                      .|.....+|.|.++           ++.+++.++.. |..+.  ++|++|++++|.+++..+.++.++++|++|++++|.
T Consensus        22 ~~~~~~~~C~~~~~-----------c~~~~~~l~~i-P~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~   87 (353)
T 2z80_A           22 SSNQASLSCDRNGI-----------CKGSSGSLNSI-PSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNG   87 (353)
T ss_dssp             -----CCEECTTSE-----------EECCSTTCSSC-CTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC
T ss_pred             CCCccCCCCCCCeE-----------eeCCCCCcccc-ccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCc
Confidence            34444555666553           45677777744 33333  588999999998886666688889999999999998


Q ss_pred             CCCcCccccccCCCCcEEEcCCCcCCCCcchhccCCCCCCEEecccccCCCCCCc--cccCCCCCCEEEccCC-cCcccC
Q 046712           94 FLGKILTDLSHCSNLMKFEASNNKLEGEIPVKISNLLMLQILNIAENHLKGQLPA--SIGNLSALQEIDVRGN-RLGGRI  170 (566)
Q Consensus        94 l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~--~~~~l~~L~~L~l~~~-~i~~~~  170 (566)
                      +++..+..|.++++|++|++++|++++..+..+.++++|++|++++|.+. .++.  .+..+++|++|++++| .+....
T Consensus        88 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~~~~  166 (353)
T 2z80_A           88 INTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQ  166 (353)
T ss_dssp             CCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCS-SSCSSCSCTTCTTCCEEEEEESSSCCEEC
T ss_pred             cCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCc-ccCchhhhccCCCCcEEECCCCccccccC
Confidence            88777778888999999999999888655555888899999999998888 4544  6888899999999888 466555


Q ss_pred             CcccccCCcccEeecccccceecCC-cccCcccCceEecccccccccCCCCCCCCCCCCcEEEcccccccccCcccc---
Q 046712          171 PSTISHVRNLISFNVAYNQFSGMIP-PIYNISSLQYIFIHTNRFHGSVPLDNGVNLPNLRYFSISGNNLTGSLQDSL---  246 (566)
Q Consensus       171 ~~~l~~l~~L~~L~l~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l---  246 (566)
                      +..+..+++|+.|++++|.+.+..+ .+..+++|++|++++|.+. .++......+++|+.|++++|.+++.....+   
T Consensus       167 ~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~  245 (353)
T 2z80_A          167 RKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTG  245 (353)
T ss_dssp             TTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCST-THHHHHHHHTTTEEEEEEESCBCTTCCCC-----
T ss_pred             HHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccc-cchhhhhhhcccccEEECCCCccccccccccccc
Confidence            6778888899999998888877655 6777888888888888764 3333333346788888888887765433322   


Q ss_pred             cccCCCCeeeccccccccc----ccccccCCCCCcEEECCCCccCCcCCCChhhhhhccCCCCCCEEEccCCeeeeec
Q 046712          247 SNATNLQGLEINRNLFSGK----VSINFSRLQNLSRLNLGENNLGTGTTNDLDFITLLTNCTKLEVLDLHSNRFGGVL  320 (566)
Q Consensus       247 ~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~  320 (566)
                      .....++.+++.++.+.+.    .+..+..+++|+.|++++|.+...+.      ..+..+++|+.|++++|++.+..
T Consensus       246 ~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~------~~~~~l~~L~~L~L~~N~~~~~~  317 (353)
T 2z80_A          246 ETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPD------GIFDRLTSLQKIWLHTNPWDCSC  317 (353)
T ss_dssp             -CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCT------TTTTTCTTCCEEECCSSCBCCCH
T ss_pred             cccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCH------HHHhcCCCCCEEEeeCCCccCcC
Confidence            2345666777776665432    33446677777777777777765544      23456777777777777776443

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.94  E-value=1.9e-26  Score=222.06  Aligned_cols=225  Identities=20%  Similarity=0.300  Sum_probs=167.5

Q ss_pred             cCCcEEEccCCCCCCCcchhhhccCCCCeecccCCcccccccccccCCCCCCEEEccCCcccccCCccccCCCCCCeEec
Q 046712          329 TTMTEIAIGSNQISDTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSIQILFLNENFLRGTIPSSLGNLTLLTQLIL  408 (566)
Q Consensus       329 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l  408 (566)
                      +.++.|+++++.+. .+|..+..+++|++|++++|.+. ..|..+..+++|++|++++|.++ .+|..+..+++|++|++
T Consensus        81 ~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L  157 (328)
T 4fcg_A           81 PGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSI  157 (328)
T ss_dssp             TTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEE
T ss_pred             cceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEEC
Confidence            45555566655555 34555556666777777776666 55566666667777777777666 55666666677777777


Q ss_pred             cCccccccCCCCCcC---------CCCCcEEEccCCcceeccchhhhhhcccceEEEccCCcccccCCcCccCCCCCCEE
Q 046712          409 EVNNLQGKIPPSNGN---------CQNLILLTTRKNKLSGIVPRQLLRIITLSVLLDLSDNLLSGHFPTKVGNLKNLVSL  479 (566)
Q Consensus       409 ~~~~l~~~~~~~~~~---------~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L  479 (566)
                      ++|++.+.+|..+..         +++|++|++++|.+. .+|..+..+..+ +.|++++|.+.+ .+..+..+++|++|
T Consensus       158 ~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L-~~L~L~~N~l~~-l~~~l~~l~~L~~L  234 (328)
T 4fcg_A          158 RACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNL-KSLKIRNSPLSA-LGPAIHHLPKLEEL  234 (328)
T ss_dssp             EEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTC-CEEEEESSCCCC-CCGGGGGCTTCCEE
T ss_pred             CCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCC-CEEEccCCCCCc-CchhhccCCCCCEE
Confidence            766666566655543         777777777777776 556666655554 777888887774 45567888899999


Q ss_pred             eCccccccccCCccccCCCCCcEEeCCCCcccccCCcCCcCCCCCCEEeCCCCccccccCccccccccCceeecccCcCc
Q 046712          480 DISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTISIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLLFLNMSYNHFE  559 (566)
Q Consensus       480 ~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~  559 (566)
                      ++++|++.+.+|..+..+++|++|+|++|.+.+.+|..+..+++|++|++++|++.+.+|+.+.++++|+.+++..+.+.
T Consensus       235 ~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~  314 (328)
T 4fcg_A          235 DLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA  314 (328)
T ss_dssp             ECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred             ECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence            99998888888888888999999999998888888888999999999999999998899999999999999988876543

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.94  E-value=3.5e-26  Score=218.89  Aligned_cols=280  Identities=19%  Similarity=0.203  Sum_probs=178.0

Q ss_pred             CeeecccccccccccccccCCCCCcEEECCCCccCCcCCCChhhhhhccCCCCCCEEEccCCeeeeec--chhHhhhccC
Q 046712          253 QGLEINRNLFSGKVSINFSRLQNLSRLNLGENNLGTGTTNDLDFITLLTNCTKLEVLDLHSNRFGGVL--PFSLANLSTT  330 (566)
Q Consensus       253 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~~  330 (566)
                      +.++.+++.++.... .+  .++|++|++++|.+...+.      ..+..+++|+.|++++|.+....  +..+.. .++
T Consensus        10 ~~l~c~~~~l~~ip~-~~--~~~l~~L~L~~n~l~~i~~------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~-~~~   79 (306)
T 2z66_A           10 TEIRCNSKGLTSVPT-GI--PSSATRLELESNKLQSLPH------GVFDKLTQLTKLSLSSNGLSFKGCCSQSDFG-TTS   79 (306)
T ss_dssp             TEEECCSSCCSSCCS-CC--CTTCCEEECCSSCCCCCCT------TTTTTCTTCSEEECCSSCCCEEEEEEHHHHS-CSC
T ss_pred             CEEEcCCCCcccCCC-CC--CCCCCEEECCCCccCccCH------hHhhccccCCEEECCCCccCcccCccccccc-ccc
Confidence            355555555543332 12  2567777777777765544      33566777777777777665332  333333 367


Q ss_pred             CcEEEccCCCCCCCcchhhhccCCCCeecccCCccccccc-ccccCCCCCCEEEccCCcccccCCccccCCCCCCeEecc
Q 046712          331 MTEIAIGSNQISDTIPDVIANLVNLNALGVESNQLAGTIP-LAIGELKSIQILFLNENFLRGTIPSSLGNLTLLTQLILE  409 (566)
Q Consensus       331 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~  409 (566)
                      |++|++++|.+.. ++..+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..+..+..+++|++|+++
T Consensus        80 L~~L~Ls~n~i~~-l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  158 (306)
T 2z66_A           80 LKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMA  158 (306)
T ss_dssp             CCEEECCSCSEEE-EEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECT
T ss_pred             cCEEECCCCcccc-ChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECC
Confidence            7777777777663 44456667777777777777765443 456677777777777777766666667777777777777


Q ss_pred             Cccccc-cCCCCCcCCCCCcEEEccCCcceeccchhhhhhcccceEEEccCCcccccCCcCccCCCCCCEEeCccccccc
Q 046712          410 VNNLQG-KIPPSNGNCQNLILLTTRKNKLSGIVPRQLLRIITLSVLLDLSDNLLSGHFPTKVGNLKNLVSLDISSNMFSG  488 (566)
Q Consensus       410 ~~~l~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~l~~  488 (566)
                      +|.+.+ ..+..+..+++|++|++++|.+.+..+..+..++.+ +.|++++|.+.+..+..+..+++|+.|++++|++.+
T Consensus       159 ~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L-~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~  237 (306)
T 2z66_A          159 GNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSL-QVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMT  237 (306)
T ss_dssp             TCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTC-CEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCB
T ss_pred             CCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCC-CEEECCCCccCccChhhccCcccCCEeECCCCCCcc
Confidence            777765 456667777777777777777776656666555544 777777777776666566777777777777777776


Q ss_pred             cCCccccCCC-CCcEEeCCCCcccccCC--cCCcCCCCCCEEeCCCCccccccCccccc
Q 046712          489 EIPTTLGGCT-SLEYLGMQDNSFTISIP--STLSSLKSITELDLSRNNLSGHIPQYLEN  544 (566)
Q Consensus       489 ~~~~~~~~~~-~L~~L~L~~n~~~~~~~--~~l~~l~~L~~L~l~~n~~~~~~~~~l~~  544 (566)
                      ..+..+..++ +|++|++++|.+.....  .....+...+.+.+..+.+....|+.+..
T Consensus       238 ~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~~C~~p~~~~g  296 (306)
T 2z66_A          238 SKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQG  296 (306)
T ss_dssp             CSSSSCCCCCTTCCEEECTTCCEECSGGGHHHHHHHHHTGGGBSCGGGCBEEESGGGTT
T ss_pred             cCHHHHHhhhccCCEEEccCCCeecccChHHHHHHHHhhhhhhccccccccCCchhhCC
Confidence            6666666663 77777777777664211  00112233444455555666556655544

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.94  E-value=3.6e-27  Score=230.44  Aligned_cols=280  Identities=18%  Similarity=0.203  Sum_probs=218.6

Q ss_pred             ccCCCCeeecccccccccccccccCCCCCcEEECCCCccCCcCCCChhhhhhccCCCCCCEEEccCCeeeeecchhHhhh
Q 046712          248 NATNLQGLEINRNLFSGKVSINFSRLQNLSRLNLGENNLGTGTTNDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANL  327 (566)
Q Consensus       248 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~  327 (566)
                      .|+.....+.+++.++.... .+  .++|++|++++|.+...+.      ..+..+++|+.|++++|.+.+..+..+...
T Consensus        29 ~C~~~~~c~~~~~~l~~iP~-~~--~~~L~~L~l~~n~i~~~~~------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l   99 (353)
T 2z80_A           29 SCDRNGICKGSSGSLNSIPS-GL--TEAVKSLDLSNNRITYISN------SDLQRCVNLQALVLTSNGINTIEEDSFSSL   99 (353)
T ss_dssp             EECTTSEEECCSTTCSSCCT-TC--CTTCCEEECTTSCCCEECT------TTTTTCTTCCEEECTTSCCCEECTTTTTTC
T ss_pred             CCCCCeEeeCCCCCcccccc-cc--cccCcEEECCCCcCcccCH------HHhccCCCCCEEECCCCccCccCHhhcCCC
Confidence            45556667778887775443 22  3689999999999887665      457789999999999999987777666554


Q ss_pred             ccCCcEEEccCCCCCCCcchhhhccCCCCeecccCCccccccc-ccccCCCCCCEEEccCCc-ccccCCccccCCCCCCe
Q 046712          328 STTMTEIAIGSNQISDTIPDVIANLVNLNALGVESNQLAGTIP-LAIGELKSIQILFLNENF-LRGTIPSSLGNLTLLTQ  405 (566)
Q Consensus       328 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~n~-~~~~~~~~~~~~~~L~~  405 (566)
                       +.|++|++++|.+++..+..+..+++|++|++++|.+++... ..+..+++|++|++++|. +....+..+..+++|++
T Consensus       100 -~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~  178 (353)
T 2z80_A          100 -GSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEE  178 (353)
T ss_dssp             -TTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEE
T ss_pred             -CCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCE
Confidence             899999999999987666668889999999999999985544 478889999999999984 66555678888999999


Q ss_pred             EeccCccccccCCCCCcCCCCCcEEEccCCcceeccchhhhhhcccceEEEccCCcccccCCcCcc---CCCCCCEEeCc
Q 046712          406 LILEVNNLQGKIPPSNGNCQNLILLTTRKNKLSGIVPRQLLRIITLSVLLDLSDNLLSGHFPTKVG---NLKNLVSLDIS  482 (566)
Q Consensus       406 L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~---~~~~L~~L~ls  482 (566)
                      |++++|.+.+..+..+..+++|++|++++|.+. ..+..+....+.++.|++++|.+.+..+..+.   ..+.++.++++
T Consensus       179 L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~  257 (353)
T 2z80_A          179 LEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFR  257 (353)
T ss_dssp             EEEEETTCCEECTTTTTTCSEEEEEEEECSCST-THHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEE
T ss_pred             EECCCCCcCccCHHHHhccccCCeecCCCCccc-cchhhhhhhcccccEEECCCCccccccccccccccccchhhccccc
Confidence            999999998888889999999999999999985 44555555455569999999988865544332   45677888888


Q ss_pred             cccccc----cCCccccCCCCCcEEeCCCCcccccCCcC-CcCCCCCCEEeCCCCccccccC
Q 046712          483 SNMFSG----EIPTTLGGCTSLEYLGMQDNSFTISIPST-LSSLKSITELDLSRNNLSGHIP  539 (566)
Q Consensus       483 ~~~l~~----~~~~~~~~~~~L~~L~L~~n~~~~~~~~~-l~~l~~L~~L~l~~n~~~~~~~  539 (566)
                      ++.+.+    .+|..+..+++|++|++++|.++ .+|.. |..+++|++|++++|++.+..|
T Consensus       258 ~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~~~~  318 (353)
T 2z80_A          258 NVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP  318 (353)
T ss_dssp             SCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             cccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence            877664    35666788888999999999888 45554 5788899999999998875543

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.94  E-value=3.9e-26  Score=230.78  Aligned_cols=229  Identities=21%  Similarity=0.235  Sum_probs=146.0

Q ss_pred             cCCcEEEccCCCCCCCcchhhhccCCCCeecccCCcccccccccccCCCCCCEEEccCCcccccCCccccCCCCCCeEec
Q 046712          329 TTMTEIAIGSNQISDTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSIQILFLNENFLRGTIPSSLGNLTLLTQLIL  408 (566)
Q Consensus       329 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l  408 (566)
                      +.++.|++++|.+.+..+..|..+++|++|++++|.+.+..+..|.++++|++|++++|.++...+..|..+++|++|++
T Consensus        75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  154 (452)
T 3zyi_A           75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWL  154 (452)
T ss_dssp             TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEEC
T ss_pred             CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEEC
Confidence            34445555555444444445555666666666666665555555556666666666666665444444555666666666


Q ss_pred             cCccccccCCCCCcCCCCCcEEEccCCcceeccchhhhhhcccceEEEccCCcccccCCcCccCCCCCCEEeCccccccc
Q 046712          409 EVNNLQGKIPPSNGNCQNLILLTTRKNKLSGIVPRQLLRIITLSVLLDLSDNLLSGHFPTKVGNLKNLVSLDISSNMFSG  488 (566)
Q Consensus       409 ~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~l~~  488 (566)
                      ++|++....+..+..+++|+.|++++|...+.++...+...+.++.|++++|.+.+.  ..+..+++|++|++++|.+.+
T Consensus       155 ~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~  232 (452)
T 3zyi_A          155 RNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM--PNLTPLVGLEELEMSGNHFPE  232 (452)
T ss_dssp             CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC--CCCTTCTTCCEEECTTSCCSE
T ss_pred             CCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc--ccccccccccEEECcCCcCcc
Confidence            666655444445556666666666654333333332222223336666666666533  246677788888888888877


Q ss_pred             cCCccccCCCCCcEEeCCCCcccccCCcCCcCCCCCCEEeCCCCccccccCccccccccCceeecccCcCc
Q 046712          489 EIPTTLGGCTSLEYLGMQDNSFTISIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLLFLNMSYNHFE  559 (566)
Q Consensus       489 ~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~  559 (566)
                      ..+..|.++++|++|++++|.++...+..|..+++|+.|+|++|+++...+..+..+++|+.|++++|++.
T Consensus       233 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~  303 (452)
T 3zyi_A          233 IRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN  303 (452)
T ss_dssp             ECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEE
T ss_pred             cCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcC
Confidence            66777888888888888888888777777888888888888888888666677778888888888888654

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.94  E-value=5.3e-26  Score=228.96  Aligned_cols=227  Identities=21%  Similarity=0.197  Sum_probs=128.8

Q ss_pred             CCcEEEccCCCCCCCcchhhhccCCCCeecccCCcccccccccccCCCCCCEEEccCCcccccCCccccCCCCCCeEecc
Q 046712          330 TMTEIAIGSNQISDTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSIQILFLNENFLRGTIPSSLGNLTLLTQLILE  409 (566)
Q Consensus       330 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~  409 (566)
                      .++.|++++|.+....+..|..+++|++|++++|.+.+..+..|.++++|++|++++|.++...+..|..+++|++|+++
T Consensus        65 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  144 (440)
T 3zyj_A           65 NTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLR  144 (440)
T ss_dssp             TCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECC
T ss_pred             CCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCC
Confidence            34444444444443333444555555555555555554444455555555555555555553333345555555555555


Q ss_pred             CccccccCCCCCcCCCCCcEEEccCCcceeccchhhhhhcccceEEEccCCcccccCCcCccCCCCCCEEeCcccccccc
Q 046712          410 VNNLQGKIPPSNGNCQNLILLTTRKNKLSGIVPRQLLRIITLSVLLDLSDNLLSGHFPTKVGNLKNLVSLDISSNMFSGE  489 (566)
Q Consensus       410 ~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~l~~~  489 (566)
                      +|++....+..+..+++|++|++++|...+.++...+...+.++.|++++|.+.+. + .+..+++|++|++++|++.+.
T Consensus       145 ~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~Ls~N~l~~~  222 (440)
T 3zyj_A          145 NNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREI-P-NLTPLIKLDELDLSGNHLSAI  222 (440)
T ss_dssp             SCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSC-C-CCTTCSSCCEEECTTSCCCEE
T ss_pred             CCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccc-c-ccCCCcccCEEECCCCccCcc
Confidence            55555444444555555555555553322222222222222235555555555422 2 356667777777777777766


Q ss_pred             CCccccCCCCCcEEeCCCCcccccCCcCCcCCCCCCEEeCCCCccccccCccccccccCceeecccCcC
Q 046712          490 IPTTLGGCTSLEYLGMQDNSFTISIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLLFLNMSYNHF  558 (566)
Q Consensus       490 ~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~  558 (566)
                      .+..|.++++|++|++++|.++...+..|..+++|+.|+|++|+++...+..+..+++|+.|++++|++
T Consensus       223 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~  291 (440)
T 3zyj_A          223 RPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPW  291 (440)
T ss_dssp             CTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCE
T ss_pred             ChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCc
Confidence            666777777777777777777766667777777777777777777766666667777777777777754

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.94  E-value=1.6e-27  Score=228.87  Aligned_cols=248  Identities=18%  Similarity=0.227  Sum_probs=179.9

Q ss_pred             CCCCEEEccCCeeeeecchhHhhhccCCcEEEccCCCCCCCcchhhhccCCCCeecccCCcccccccccccCCCCCCEEE
Q 046712          304 TKLEVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQISDTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSIQILF  383 (566)
Q Consensus       304 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~  383 (566)
                      ++|+.|++++|.+.+..+..+... +.|++|++++|.+++..+  +..+++|++|++++|.+++..     ..++|++|+
T Consensus        34 ~~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~-----~~~~L~~L~  105 (317)
T 3o53_A           34 WNVKELDLSGNPLSQISAADLAPF-TKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIETLH  105 (317)
T ss_dssp             GGCSEEECTTSCCCCCCHHHHTTC-TTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEE-----ECTTCCEEE
T ss_pred             CCCCEEECcCCccCcCCHHHhhCC-CcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcccccc-----CCCCcCEEE
Confidence            344444444444443333333222 444444444444433222  566777888888888776432     337788888


Q ss_pred             ccCCcccccCCccccCCCCCCeEeccCccccccCCCCCcCCCCCcEEEccCCcceeccchhhhhhcccceEEEccCCccc
Q 046712          384 LNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSNGNCQNLILLTTRKNKLSGIVPRQLLRIITLSVLLDLSDNLLS  463 (566)
Q Consensus       384 l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~  463 (566)
                      +++|.+++..+.   .+++|++|++++|++.+..+..+..+++|++|++++|.+.+..+..+....+.++.|++++|.+.
T Consensus       106 l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~  182 (317)
T 3o53_A          106 AANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY  182 (317)
T ss_dssp             CCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC
T ss_pred             CCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCc
Confidence            888887744332   35678888888888876666677788888888888888887666666544445588888888887


Q ss_pred             ccCCcCccCCCCCCEEeCccccccccCCccccCCCCCcEEeCCCCcccccCCcCCcCCCCCCEEeCCCCccc-cccCccc
Q 046712          464 GHFPTKVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTISIPSTLSSLKSITELDLSRNNLS-GHIPQYL  542 (566)
Q Consensus       464 ~~~~~~~~~~~~L~~L~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~-~~~~~~l  542 (566)
                      +..  ....+++|++|++++|.+. .++..+..+++|++|++++|.++ .+|+.+..+++|+.|++++|++. +.+|..+
T Consensus       183 ~~~--~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~  258 (317)
T 3o53_A          183 DVK--GQVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFF  258 (317)
T ss_dssp             EEE--CCCCCTTCCEEECCSSCCC-EECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHH
T ss_pred             ccc--cccccccCCEEECCCCcCC-cchhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHH
Confidence            653  2335899999999999998 55666889999999999999999 57888999999999999999998 6788899


Q ss_pred             cccccCceeecc-cCcCcccCCCCC
Q 046712          543 ENLSFLLFLNMS-YNHFEGKVPIEC  566 (566)
Q Consensus       543 ~~l~~L~~L~l~-~n~~~~~~p~~~  566 (566)
                      ..++.|+.++++ .+.++|..|.+|
T Consensus       259 ~~~~~L~~l~l~~~~~l~~~~~~~~  283 (317)
T 3o53_A          259 SKNQRVQTVAKQTVKKLTGQNEEEC  283 (317)
T ss_dssp             HTCHHHHHHHHHHHHHHHSSSSCCC
T ss_pred             hccccceEEECCCchhccCCchhcc
Confidence            999999999998 557788888776

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.94  E-value=1.4e-25  Score=212.19  Aligned_cols=252  Identities=21%  Similarity=0.168  Sum_probs=180.1

Q ss_pred             CEEEccCCeeeeecchhHhhhccCCcEEEccCCCCCCCcchhhhccCCCCeecccCCcccccccccccCCCCCCEEEccC
Q 046712          307 EVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQISDTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSIQILFLNE  386 (566)
Q Consensus       307 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~  386 (566)
                      +.++.+++.+.. +|..   .++.+++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++
T Consensus        14 ~~~~c~~~~l~~-ip~~---~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~   89 (285)
T 1ozn_A           14 VTTSCPQQGLQA-VPVG---IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD   89 (285)
T ss_dssp             CEEECCSSCCSS-CCTT---CCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             eEEEcCcCCccc-CCcC---CCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCC
Confidence            577777777663 3332   246888888888888876666788888888888888888877777788888888888888


Q ss_pred             Cc-ccccCCccccCCCCCCeEeccCccccccCCCCCcCCCCCcEEEccCCcceeccchhhhhhcccceEEEccCCccccc
Q 046712          387 NF-LRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSNGNCQNLILLTTRKNKLSGIVPRQLLRIITLSVLLDLSDNLLSGH  465 (566)
Q Consensus       387 n~-~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~  465 (566)
                      |. +....+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+..+ +.|++++|.+.+.
T Consensus        90 n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L-~~L~l~~n~l~~~  168 (285)
T 1ozn_A           90 NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNL-THLFLHGNRISSV  168 (285)
T ss_dssp             CTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC-CEEECCSSCCCEE
T ss_pred             CCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCc-cEEECCCCccccc
Confidence            86 665556778888888888888888887667778888888888888888775544445444444 7777777777766


Q ss_pred             CCcCccCCCCCCEEeCccccccccCCccccCCCCCcEEeCCCCcccccCCcCCcCCCCCCEEeCCCCccccccCcccccc
Q 046712          466 FPTKVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTISIPSTLSSLKSITELDLSRNNLSGHIPQYLENL  545 (566)
Q Consensus       466 ~~~~~~~~~~L~~L~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l  545 (566)
                      .+..+..+++|++|++++|.+.+..+..|..+++|++|++++|.+++..++.+..+++|+.|++++|++....+.. ...
T Consensus       169 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~-~~~  247 (285)
T 1ozn_A          169 PERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR-PLW  247 (285)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGH-HHH
T ss_pred             CHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcH-HHH
Confidence            6666777777777777777777666777777777777777777777555556777777777777777776432211 222


Q ss_pred             ccCceeecccCcCcccCCC
Q 046712          546 SFLLFLNMSYNHFEGKVPI  564 (566)
Q Consensus       546 ~~L~~L~l~~n~~~~~~p~  564 (566)
                      ..++.+..+.+.+....|.
T Consensus       248 ~~l~~~~~~~~~~~c~~p~  266 (285)
T 1ozn_A          248 AWLQKFRGSSSEVPCSLPQ  266 (285)
T ss_dssp             HHHHHCCSEECCCBEEESG
T ss_pred             HHHHhcccccCccccCCch
Confidence            3455555666666655553

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.94  E-value=5.7e-26  Score=214.90  Aligned_cols=269  Identities=21%  Similarity=0.203  Sum_probs=207.2

Q ss_pred             cEEECCCCccCCcCCCChhhhhhccCCCCCCEEEccCCeeeeecchhHhhhccCCcEEEccCCCCCCCcchhhhccCCCC
Q 046712          277 SRLNLGENNLGTGTTNDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQISDTIPDVIANLVNLN  356 (566)
Q Consensus       277 ~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~  356 (566)
                      +.++.+++.+...+.         ...++|+.|+++++.+.+..+..+.. .+.|++|++++|.+++..+..+..+++|+
T Consensus        14 ~~~~c~~~~l~~ip~---------~~~~~l~~L~l~~n~i~~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~~~~~l~~L~   83 (285)
T 1ozn_A           14 VTTSCPQQGLQAVPV---------GIPAASQRIFLHGNRISHVPAASFRA-CRNLTILWLHSNVLARIDAAAFTGLALLE   83 (285)
T ss_dssp             CEEECCSSCCSSCCT---------TCCTTCSEEECTTSCCCEECTTTTTT-CTTCCEEECCSSCCCEECTTTTTTCTTCC
T ss_pred             eEEEcCcCCcccCCc---------CCCCCceEEEeeCCcCCccCHHHccc-CCCCCEEECCCCccceeCHhhcCCccCCC
Confidence            667887777766543         12468999999999888766655544 37899999999988877777888899999


Q ss_pred             eecccCCc-ccccccccccCCCCCCEEEccCCcccccCCccccCCCCCCeEeccCccccccCCCCCcCCCCCcEEEccCC
Q 046712          357 ALGVESNQ-LAGTIPLAIGELKSIQILFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSNGNCQNLILLTTRKN  435 (566)
Q Consensus       357 ~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~  435 (566)
                      +|++++|. +....+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|
T Consensus        84 ~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n  163 (285)
T 1ozn_A           84 QLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGN  163 (285)
T ss_dssp             EEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             EEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCC
Confidence            99999997 77666778888899999999999988776778888899999999999988666667888999999999999


Q ss_pred             cceeccchhhhhhcccceEEEccCCcccccCCcCccCCCCCCEEeCccccccccCCccccCCCCCcEEeCCCCcccccCC
Q 046712          436 KLSGIVPRQLLRIITLSVLLDLSDNLLSGHFPTKVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTISIP  515 (566)
Q Consensus       436 ~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~  515 (566)
                      .+.+..+..+..+..+ +.|++++|.+.+..+..+..+++|+.|++++|++.+..+..+..+++|++|++++|++....+
T Consensus       164 ~l~~~~~~~~~~l~~L-~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~  242 (285)
T 1ozn_A          164 RISSVPERAFRGLHSL-DRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCR  242 (285)
T ss_dssp             CCCEECTTTTTTCTTC-CEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGG
T ss_pred             cccccCHHHhcCcccc-CEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCC
Confidence            8886655556665555 889999999988888888889999999999999886555668888999999999998774322


Q ss_pred             cCCcCCCCCCEEeCCCCccccccCccccc--cccCceeecccCc
Q 046712          516 STLSSLKSITELDLSRNNLSGHIPQYLEN--LSFLLFLNMSYNH  557 (566)
Q Consensus       516 ~~l~~l~~L~~L~l~~n~~~~~~~~~l~~--l~~L~~L~l~~n~  557 (566)
                      . ......++.+....+.+....|+.+..  +..++..++.+|+
T Consensus       243 ~-~~~~~~l~~~~~~~~~~~c~~p~~l~g~~l~~l~~~~l~~C~  285 (285)
T 1ozn_A          243 A-RPLWAWLQKFRGSSSEVPCSLPQRLAGRDLKRLAANDLQGCA  285 (285)
T ss_dssp             G-HHHHHHHHHCCSEECCCBEEESGGGTTCBGGGSCGGGSCCC-
T ss_pred             c-HHHHHHHHhcccccCccccCCchHhCCcChhhcCHHHhccCC
Confidence            1 111133445556677777777776643  5667777777773

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.93  E-value=2.3e-28  Score=256.95  Aligned_cols=106  Identities=10%  Similarity=0.147  Sum_probs=54.4

Q ss_pred             CEEeCCCCcCCCcCccccccCCCCcEEEcCCCcCCC---Ccc------------hhccCCCCCCEEecccccCCCCCCcc
Q 046712           85 QNLTLTNNYFLGKILTDLSHCSNLMKFEASNNKLEG---EIP------------VKISNLLMLQILNIAENHLKGQLPAS  149 (566)
Q Consensus        85 ~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~---~~~------------~~l~~l~~L~~L~l~~~~~~~~~~~~  149 (566)
                      +.++++++... .....+..+++|++|+++++....   ..|            .....+++|++|+++++.+++..+..
T Consensus        46 ~~l~~~~~~~~-~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~  124 (594)
T 2p1m_B           46 RKVFIGNCYAV-SPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLEL  124 (594)
T ss_dssp             CEEEESSTTSS-CHHHHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHH
T ss_pred             eEEeecccccc-CHHHHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHH
Confidence            45666555322 222345667888888888764210   111            11234556666666666655444444


Q ss_pred             cc-CCCCCCEEEccCC-cCccc-CCcccccCCcccEeecccccce
Q 046712          150 IG-NLSALQEIDVRGN-RLGGR-IPSTISHVRNLISFNVAYNQFS  191 (566)
Q Consensus       150 ~~-~l~~L~~L~l~~~-~i~~~-~~~~l~~l~~L~~L~l~~~~~~  191 (566)
                      +. .+++|++|++++| .++.. ++..+..+++|++|++++|.+.
T Consensus       125 l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~  169 (594)
T 2p1m_B          125 IAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVD  169 (594)
T ss_dssp             HHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEE
T ss_pred             HHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccC
Confidence            43 4566666666665 33211 2222335566666666666544

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.93  E-value=1.1e-24  Score=220.16  Aligned_cols=228  Identities=21%  Similarity=0.196  Sum_probs=137.8

Q ss_pred             CCCCEEecCCCcccccCCcccCCCCCCCEEeCCCCcCCCcCccccccCCCCcEEEcCCCcCCCCcchhccCCCCCCEEec
Q 046712           58 NFLRSINLPNNSFRGKIPHEVGNLFRLQNLTLTNNYFLGKILTDLSHCSNLMKFEASNNKLEGEIPVKISNLLMLQILNI  137 (566)
Q Consensus        58 ~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l  137 (566)
                      +++++|++++|.+++..+.+|.++++|++|++++|.+....+..|.++++|++|++++|.++...+..+..+++|++|++
T Consensus        75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  154 (452)
T 3zyi_A           75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWL  154 (452)
T ss_dssp             TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEEC
T ss_pred             CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEEC
Confidence            45555555555555545555555555555555555555555555555555555555555555444444555555555555


Q ss_pred             ccccCCCCCCccccCCCCCCEEEccCC-cCcccCCcccccCCcccEeecccccceecCCcccCcccCceEeccccccccc
Q 046712          138 AENHLKGQLPASIGNLSALQEIDVRGN-RLGGRIPSTISHVRNLISFNVAYNQFSGMIPPIYNISSLQYIFIHTNRFHGS  216 (566)
Q Consensus       138 ~~~~~~~~~~~~~~~l~~L~~L~l~~~-~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~  216 (566)
                      ++|.+....+..+..+++|++|++++| .+....+..+..+++|+.|++++|                       .+.+ 
T Consensus       155 ~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n-----------------------~l~~-  210 (452)
T 3zyi_A          155 RNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMC-----------------------NIKD-  210 (452)
T ss_dssp             CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTS-----------------------CCSS-
T ss_pred             CCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCC-----------------------cccc-
Confidence            555555333334555555555555552 222222223444455555555444                       4432 


Q ss_pred             CCCCCCCCCCCCcEEEcccccccccCcccccccCCCCeeecccccccccccccccCCCCCcEEECCCCccCCcCCCChhh
Q 046712          217 VPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINRNLFSGKVSINFSRLQNLSRLNLGENNLGTGTTNDLDF  296 (566)
Q Consensus       217 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~  296 (566)
                      ++.  ...+++|++|++++|.+.+..+..+..+++|+.|++++|.+....+..|..+++|+.|++++|.+...+.     
T Consensus       211 ~~~--~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-----  283 (452)
T 3zyi_A          211 MPN--LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPH-----  283 (452)
T ss_dssp             CCC--CTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCT-----
T ss_pred             ccc--ccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccCh-----
Confidence            221  2256777777777777777667777778888888888888777777777778888888888887776655     


Q ss_pred             hhhccCCCCCCEEEccCCeee
Q 046712          297 ITLLTNCTKLEVLDLHSNRFG  317 (566)
Q Consensus       297 ~~~l~~~~~L~~L~l~~~~~~  317 (566)
                       ..+..+++|+.|++++|.+.
T Consensus       284 -~~~~~l~~L~~L~L~~Np~~  303 (452)
T 3zyi_A          284 -DLFTPLRYLVELHLHHNPWN  303 (452)
T ss_dssp             -TSSTTCTTCCEEECCSSCEE
T ss_pred             -HHhccccCCCEEEccCCCcC
Confidence             34567788888888888776

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.93  E-value=1.7e-24  Score=217.90  Aligned_cols=246  Identities=21%  Similarity=0.212  Sum_probs=161.6

Q ss_pred             EEEEcCCCccccccCccCcCCCCCCEEecCCCcccccCCcccCCCCCCCEEeCCCCcCCCcCccccccCCCCcEEEcCCC
Q 046712           37 TGLDLRHQSVGGVLSPFVGNLNFLRSINLPNNSFRGKIPHEVGNLFRLQNLTLTNNYFLGKILTDLSHCSNLMKFEASNN  116 (566)
Q Consensus        37 ~~l~l~~~~i~~~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~  116 (566)
                      ..++.++.+++. +|..+.  +++++|++++|.++...+.+|.++++|++|++++|.+....+..|.++++|++|++++|
T Consensus        46 ~~v~c~~~~l~~-iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n  122 (440)
T 3zyj_A           46 SKVICVRKNLRE-VPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN  122 (440)
T ss_dssp             CEEECCSCCCSS-CCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSS
T ss_pred             CEEEeCCCCcCc-CCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCC
Confidence            345555555553 333332  57777777777777666677777777777777777777666677777777777777777


Q ss_pred             cCCCCcchhccCCCCCCEEecccccCCCCCCccccCCCCCCEEEccCC-cCcccCCcccccCCcccEeecccccceecCC
Q 046712          117 KLEGEIPVKISNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGN-RLGGRIPSTISHVRNLISFNVAYNQFSGMIP  195 (566)
Q Consensus       117 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~-~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~  195 (566)
                      +++...+..+..+++|++|++++|.+....+..+..+++|++|++++| .+....+..|..+++|+.|++++|.+.... 
T Consensus       123 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~-  201 (440)
T 3zyj_A          123 RLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP-  201 (440)
T ss_dssp             CCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCC-
T ss_pred             cCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcccc-
Confidence            777555556777777777777777776555556777777777777763 333233335666667777766666554221 


Q ss_pred             cccCcccCceEecccccccccCCCCCCCCCCCCcEEEcccccccccCcccccccCCCCeeecccccccccccccccCCCC
Q 046712          196 PIYNISSLQYIFIHTNRFHGSVPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINRNLFSGKVSINFSRLQN  275 (566)
Q Consensus       196 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~  275 (566)
                      .+.                         .+++|++|++++|.+++..+..+..+++|+.|++++|.+....+..|..+++
T Consensus       202 ~~~-------------------------~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~  256 (440)
T 3zyj_A          202 NLT-------------------------PLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQS  256 (440)
T ss_dssp             CCT-------------------------TCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTT
T ss_pred             ccC-------------------------CCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCC
Confidence            222                         4556666666666666555666666667777777777666666666666777


Q ss_pred             CcEEECCCCccCCcCCCChhhhhhccCCCCCCEEEccCCeee
Q 046712          276 LSRLNLGENNLGTGTTNDLDFITLLTNCTKLEVLDLHSNRFG  317 (566)
Q Consensus       276 L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~  317 (566)
                      |+.|++++|.+...+.      ..+..+++|+.|++++|.+.
T Consensus       257 L~~L~L~~N~l~~~~~------~~~~~l~~L~~L~L~~Np~~  292 (440)
T 3zyj_A          257 LVEINLAHNNLTLLPH------DLFTPLHHLERIHLHHNPWN  292 (440)
T ss_dssp             CCEEECTTSCCCCCCT------TTTSSCTTCCEEECCSSCEE
T ss_pred             CCEEECCCCCCCccCh------hHhccccCCCEEEcCCCCcc
Confidence            7777777776665554      34556677777777777665

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.93  E-value=6e-27  Score=224.33  Aligned_cols=204  Identities=20%  Similarity=0.193  Sum_probs=138.3

Q ss_pred             ccCCCCeecccCCcccccccccc--cCCCCCCEEEccCCcccccCCccccCC-----CCCCeEeccCccccccCCCCCcC
Q 046712          351 NLVNLNALGVESNQLAGTIPLAI--GELKSIQILFLNENFLRGTIPSSLGNL-----TLLTQLILEVNNLQGKIPPSNGN  423 (566)
Q Consensus       351 ~l~~L~~L~l~~~~~~~~~~~~~--~~~~~L~~L~l~~n~~~~~~~~~~~~~-----~~L~~L~l~~~~l~~~~~~~~~~  423 (566)
                      .+++|++|++++|.+++..|..+  ..+++|++|++++|.+++. +..+..+     ++|++|++++|++.+..+..+..
T Consensus        93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~  171 (312)
T 1wwl_A           93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRV  171 (312)
T ss_dssp             TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCC
T ss_pred             CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhcc
Confidence            45566666666666655555443  5566666666666666543 4444443     56666666666666555556666


Q ss_pred             CCCCcEEEccCCcceec--cchhh--hhhcccceEEEccCCcccc---cCCcCccCCCCCCEEeCccccccccCC-cccc
Q 046712          424 CQNLILLTTRKNKLSGI--VPRQL--LRIITLSVLLDLSDNLLSG---HFPTKVGNLKNLVSLDISSNMFSGEIP-TTLG  495 (566)
Q Consensus       424 ~~~L~~L~l~~~~~~~~--~~~~~--~~~~~~l~~L~l~~~~~~~---~~~~~~~~~~~L~~L~ls~~~l~~~~~-~~~~  495 (566)
                      +++|++|++++|++.+.  .+..+  ..+ +.++.|++++|.+.+   .....+..+++|++|++++|.+.+..+ ..+.
T Consensus       172 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l-~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~  250 (312)
T 1wwl_A          172 FPALSTLDLSDNPELGERGLISALCPLKF-PTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCD  250 (312)
T ss_dssp             CSSCCEEECCSCTTCHHHHHHHHSCTTSC-TTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCC
T ss_pred             CCCCCEEECCCCCcCcchHHHHHHHhccC-CCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhh
Confidence            66666666666665433  12222  222 333666666666652   222334577899999999999986554 4566


Q ss_pred             CCCCCcEEeCCCCcccccCCcCCcCCCCCCEEeCCCCccccccCccccccccCceeecccCcCccc
Q 046712          496 GCTSLEYLGMQDNSFTISIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLLFLNMSYNHFEGK  561 (566)
Q Consensus       496 ~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~  561 (566)
                      .+++|++|++++|.++ .+|..+.  ++|++|++++|++++. |. +..+++|++|++++|++++.
T Consensus       251 ~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~~  311 (312)
T 1wwl_A          251 WPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLDS  311 (312)
T ss_dssp             CCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTCC
T ss_pred             hcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCCC
Confidence            7899999999999998 7787777  8999999999999865 66 88999999999999999874

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.93  E-value=8.6e-28  Score=252.60  Aligned_cols=451  Identities=12%  Similarity=0.089  Sum_probs=213.5

Q ss_pred             CCCcccccccCCCCCcEEEEEcCCCccccccCccCcCCCCCCEEecCCCccccc---CCc------------ccCCCCCC
Q 046712           20 NLCQWTGVTCGHRRQRVTGLDLRHQSVGGVLSPFVGNLNFLRSINLPNNSFRGK---IPH------------EVGNLFRL   84 (566)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~l~l~~~~i~~~~~~~~~~l~~L~~L~ls~~~l~~~---~~~------------~~~~l~~L   84 (566)
                      -|.+|.++..    ...+.++++++... .....+..+++|++|+++++.....   .|.            .+..+++|
T Consensus        33 vck~W~~~~~----~~~~~l~~~~~~~~-~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L  107 (594)
T 2p1m_B           33 VCKSWYEIER----WCRRKVFIGNCYAV-SPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWL  107 (594)
T ss_dssp             SCHHHHHHHH----HHCCEEEESSTTSS-CHHHHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTC
T ss_pred             HHHHHHHhhh----hhceEEeecccccc-CHHHHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCC
Confidence            3447876632    12234454443222 2223456666677777766532111   111            12345667


Q ss_pred             CEEeCCCCcCCCcCccccc-cCCCCcEEEcCCC-cCCCC-cchhccCCCCCCEEecccccCCCCCCccc----cCCCCCC
Q 046712           85 QNLTLTNNYFLGKILTDLS-HCSNLMKFEASNN-KLEGE-IPVKISNLLMLQILNIAENHLKGQLPASI----GNLSALQ  157 (566)
Q Consensus        85 ~~L~l~~~~l~~~~~~~~~-~l~~L~~L~l~~~-~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~~----~~l~~L~  157 (566)
                      ++|++++|.+++..+..+. .+++|++|++++| .++.. ++..+..+++|++|++++|.+++..+..+    ..+++|+
T Consensus       108 ~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~  187 (594)
T 2p1m_B          108 EEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLV  187 (594)
T ss_dssp             CEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCC
T ss_pred             CeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCc
Confidence            7777777666554444454 4667777777666 33321 23333456677777777666553332222    3556777


Q ss_pred             EEEccCCc--Ccc-cCCcccccCCcccEeecccc-cceecCCcccCcccCceEeccccc-------ccccCCCCCCCCCC
Q 046712          158 EIDVRGNR--LGG-RIPSTISHVRNLISFNVAYN-QFSGMIPPIYNISSLQYIFIHTNR-------FHGSVPLDNGVNLP  226 (566)
Q Consensus       158 ~L~l~~~~--i~~-~~~~~l~~l~~L~~L~l~~~-~~~~~~~~l~~~~~L~~L~l~~~~-------~~~~~~~~~~~~~~  226 (566)
                      +|++++|.  +.. .++..+..+++|++|++++| .+.+....+..+++|++|.+..+.       +.+ ++... ..++
T Consensus       188 ~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-l~~~l-~~~~  265 (594)
T 2p1m_B          188 SLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSG-LSVAL-SGCK  265 (594)
T ss_dssp             EEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHH-HHHHH-HTCT
T ss_pred             EEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHH-HHHHH-hcCC
Confidence            77776665  211 11111234567777777666 222222244456666666654332       111 11111 2455


Q ss_pred             CCcEE-EcccccccccCcccccccCCCCeeecccccccccccc-cccCCCCCcEEECCCCccCCcCCCChhhhhhccCCC
Q 046712          227 NLRYF-SISGNNLTGSLQDSLSNATNLQGLEINRNLFSGKVSI-NFSRLQNLSRLNLGENNLGTGTTNDLDFITLLTNCT  304 (566)
Q Consensus       227 ~L~~L-~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~  304 (566)
                      +|+.+ .+..... ...+..+..+++|++|++++|.++..... .+..+++|++|++.+| +..     .........++
T Consensus       266 ~L~~Ls~~~~~~~-~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~-----~~l~~l~~~~~  338 (594)
T 2p1m_B          266 ELRCLSGFWDAVP-AYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IED-----AGLEVLASTCK  338 (594)
T ss_dssp             TCCEEECCBTCCG-GGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHH-----HHHHHHHHHCT
T ss_pred             CcccccCCcccch-hhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCH-----HHHHHHHHhCC
Confidence            55555 2322211 12222233455666666666554322211 1345566666666554 211     01111222355


Q ss_pred             CCCEEEccC---------CeeeeecchhHhhhccCCcEEEccCCCCCCCcchhhh-ccCCCCeeccc--C----Cccccc
Q 046712          305 KLEVLDLHS---------NRFGGVLPFSLANLSTTMTEIAIGSNQISDTIPDVIA-NLVNLNALGVE--S----NQLAGT  368 (566)
Q Consensus       305 ~L~~L~l~~---------~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~l~--~----~~~~~~  368 (566)
                      +|+.|++.+         +.+++.....+....++|++|.+..+.+++.....+. .+++|++|+++  +    +.+++.
T Consensus       339 ~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~  418 (594)
T 2p1m_B          339 DLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLE  418 (594)
T ss_dssp             TCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCC
T ss_pred             CCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCC
Confidence            666666622         2333222233333335666665555555443333332 35666666666  2    233311


Q ss_pred             -----ccccccCCCCCCEEEccCCcccccCCccccC-CCCCCeEeccCccccccCCCCC-cCCCCCcEEEccCCcceecc
Q 046712          369 -----IPLAIGELKSIQILFLNENFLRGTIPSSLGN-LTLLTQLILEVNNLQGKIPPSN-GNCQNLILLTTRKNKLSGIV  441 (566)
Q Consensus       369 -----~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~-~~~L~~L~l~~~~l~~~~~~~~-~~~~~L~~L~l~~~~~~~~~  441 (566)
                           .+..+..+++|++|++++ .+++.....+.. +++|+.|++++|.+++.....+ ..+++|++|++++|.+++..
T Consensus       419 ~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~  497 (594)
T 2p1m_B          419 PLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKA  497 (594)
T ss_dssp             CTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHH
T ss_pred             chhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHH
Confidence                 111244556666666655 443332223322 5666666666666543332222 34666666666666664333


Q ss_pred             chhhhhhcccceEEEccCCcccccCCcCc-cCCCCCCEEeCcccc
Q 046712          442 PRQLLRIITLSVLLDLSDNLLSGHFPTKV-GNLKNLVSLDISSNM  485 (566)
Q Consensus       442 ~~~~~~~~~~l~~L~l~~~~~~~~~~~~~-~~~~~L~~L~ls~~~  485 (566)
                      ...+....+.++.|++++|+++......+ ..+|+|+...+..+.
T Consensus       498 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~~~  542 (594)
T 2p1m_B          498 LLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDERG  542 (594)
T ss_dssp             HHHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEEEEECSSS
T ss_pred             HHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEEEEecCCC
Confidence            33333323344666666666643333333 345666555555443

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.92  E-value=1.1e-24  Score=225.29  Aligned_cols=288  Identities=20%  Similarity=0.270  Sum_probs=161.3

Q ss_pred             CCCCCCCCCcCCCCCCcccccc--------cCCCCCcEEEEEcCCCccccccCccCcCCCCCCEEecCCCcccccCCccc
Q 046712            7 DPLGVTSSWNNSINLCQWTGVT--------CGHRRQRVTGLDLRHQSVGGVLSPFVGNLNFLRSINLPNNSFRGKIPHEV   78 (566)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~l~l~~~~i~~~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~   78 (566)
                      |...+.+.|.+.+.||.|.+..        |..  .++++|++++++++ .+|..+.  ++|++|++++|.++ .+|.  
T Consensus         7 ~~~~~w~~W~~~~~~~~~~~r~~~~~~~~~c~~--~~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~--   78 (622)
T 3g06_A            7 EYDAVWSAWRRAAPAEESRGRAAVVQKMRACLN--NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA--   78 (622)
T ss_dssp             ---CHHHHHHHTCCGGGHHHHHHHHHHHHHHHH--HCCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC--
T ss_pred             HHHHHHHHHHhcCCcchhccccccCcccccccC--CCCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC--
Confidence            5667778899999999996532        321  35778888888887 4444444  78888888888777 4554  


Q ss_pred             CCCCCCCEEeCCCCcCCCcCccccccCCCCcEEEcCCCcCCCCcchhccCCCCCCEEecccccCCCCCCccccCCCCCCE
Q 046712           79 GNLFRLQNLTLTNNYFLGKILTDLSHCSNLMKFEASNNKLEGEIPVKISNLLMLQILNIAENHLKGQLPASIGNLSALQE  158 (566)
Q Consensus        79 ~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~  158 (566)
                       .+++|++|++++|.++....    .+++|++|++++|.++. +|.   .+++|++|++++|.+. .+|..   +++|++
T Consensus        79 -~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~N~l~~-l~~---~l~~L~~L~L~~N~l~-~lp~~---l~~L~~  145 (622)
T 3g06_A           79 -LPPELRTLEVSGNQLTSLPV----LPPGLLELSIFSNPLTH-LPA---LPSGLCKLWIFGNQLT-SLPVL---PPGLQE  145 (622)
T ss_dssp             -CCTTCCEEEECSCCCSCCCC----CCTTCCEEEECSCCCCC-CCC---CCTTCCEEECCSSCCS-CCCCC---CTTCCE
T ss_pred             -cCCCCCEEEcCCCcCCcCCC----CCCCCCEEECcCCcCCC-CCC---CCCCcCEEECCCCCCC-cCCCC---CCCCCE
Confidence             46778888888877764332    56777777777777763 333   4567777777777766 34442   366777


Q ss_pred             EEccCCcCcccCCcccccCCcccEeecccccceecCCcccCcccCceEecccccccccCCCCCCCCCCCCcEEEcccccc
Q 046712          159 IDVRGNRLGGRIPSTISHVRNLISFNVAYNQFSGMIPPIYNISSLQYIFIHTNRFHGSVPLDNGVNLPNLRYFSISGNNL  238 (566)
Q Consensus       159 L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  238 (566)
                      |++++|.++ .+|.   ..++|+.|++++|.+....   .                         .+++|+.|++++|.+
T Consensus       146 L~Ls~N~l~-~l~~---~~~~L~~L~L~~N~l~~l~---~-------------------------~~~~L~~L~Ls~N~l  193 (622)
T 3g06_A          146 LSVSDNQLA-SLPA---LPSELCKLWAYNNQLTSLP---M-------------------------LPSGLQELSVSDNQL  193 (622)
T ss_dssp             EECCSSCCS-CCCC---CCTTCCEEECCSSCCSCCC---C-------------------------CCTTCCEEECCSSCC
T ss_pred             EECcCCcCC-CcCC---ccCCCCEEECCCCCCCCCc---c-------------------------cCCCCcEEECCCCCC
Confidence            777777665 2332   2244555555555444322   1                         234555555555544


Q ss_pred             cccCcccccccCCCCeeecccccccccccccccCCCCCcEEECCCCccCCcCCCChhhhhhccCCCCCCEEEccCCeeee
Q 046712          239 TGSLQDSLSNATNLQGLEINRNLFSGKVSINFSRLQNLSRLNLGENNLGTGTTNDLDFITLLTNCTKLEVLDLHSNRFGG  318 (566)
Q Consensus       239 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~  318 (566)
                      ++. +.   ..++|+.|++++|.+.....    .+++|+.|++++|.+...+          ..+++|+.|++++|.+..
T Consensus       194 ~~l-~~---~~~~L~~L~L~~N~l~~l~~----~~~~L~~L~Ls~N~L~~lp----------~~l~~L~~L~Ls~N~L~~  255 (622)
T 3g06_A          194 ASL-PT---LPSELYKLWAYNNRLTSLPA----LPSGLKELIVSGNRLTSLP----------VLPSELKELMVSGNRLTS  255 (622)
T ss_dssp             SCC-CC---CCTTCCEEECCSSCCSSCCC----CCTTCCEEECCSSCCSCCC----------CCCTTCCEEECCSSCCSC
T ss_pred             CCC-CC---ccchhhEEECcCCcccccCC----CCCCCCEEEccCCccCcCC----------CCCCcCcEEECCCCCCCc
Confidence            421 11   12445555555555442221    1245555555555554322          123555555555555542


Q ss_pred             ecchhHhhhccCCcEEEccCCCCCCCcchhhhccCCCCeecccCCcccccccc
Q 046712          319 VLPFSLANLSTTMTEIAIGSNQISDTIPDVIANLVNLNALGVESNQLAGTIPL  371 (566)
Q Consensus       319 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~  371 (566)
                      . |.    .+++|+.|++++|.++ .+|..+..+++|+.|++++|.+++..+.
T Consensus       256 l-p~----~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~  302 (622)
T 3g06_A          256 L-PM----LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQ  302 (622)
T ss_dssp             C-CC----CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHH
T ss_pred             C-Cc----ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHH
Confidence            2 21    2244555555555554 3344455555555555555555544433

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.92  E-value=2.4e-25  Score=225.99  Aligned_cols=236  Identities=17%  Similarity=0.207  Sum_probs=182.2

Q ss_pred             CCCCEEEccCCeeeeecchhHhhhccCCcEEEccCCCCCCCcchhhhccCCCCeecccCCcccccccccccCCCCCCEEE
Q 046712          304 TKLEVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQISDTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSIQILF  383 (566)
Q Consensus       304 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~  383 (566)
                      ++|+.|++++|.+.+..+..+... +.|+.|++++|.+++..+  +..+++|++|++++|.+++..     ..++|++|+
T Consensus        34 ~~L~~L~Ls~n~l~~~~~~~~~~l-~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-----~~~~L~~L~  105 (487)
T 3oja_A           34 WNVKELDLSGNPLSQISAADLAPF-TKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIETLH  105 (487)
T ss_dssp             GGCCEEECCSSCCCCCCGGGGTTC-TTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEE-----ECTTCCEEE
T ss_pred             CCccEEEeeCCcCCCCCHHHHhCC-CCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCC-----CCCCcCEEE
Confidence            456666666666665544444333 566666666666654433  677888888888888887433     237888888


Q ss_pred             ccCCcccccCCccccCCCCCCeEeccCccccccCCCCCcCCCCCcEEEccCCcceeccchhhhhhcccceEEEccCCccc
Q 046712          384 LNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSNGNCQNLILLTTRKNKLSGIVPRQLLRIITLSVLLDLSDNLLS  463 (566)
Q Consensus       384 l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~  463 (566)
                      +++|.+++..+.   .+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+....+.++.|++++|.+.
T Consensus       106 L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~  182 (487)
T 3oja_A          106 AANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY  182 (487)
T ss_dssp             CCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC
T ss_pred             CcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccc
Confidence            888888754433   35788899999998887777788888899999999998888777777644445589999999888


Q ss_pred             ccCCcCccCCCCCCEEeCccccccccCCccccCCCCCcEEeCCCCcccccCCcCCcCCCCCCEEeCCCCccc-cccCccc
Q 046712          464 GHFPTKVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTISIPSTLSSLKSITELDLSRNNLS-GHIPQYL  542 (566)
Q Consensus       464 ~~~~~~~~~~~~L~~L~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~-~~~~~~l  542 (566)
                      +..+  +..+++|+.|++++|.+++ +|..+..+++|+.|++++|.++ .+|.++..+++|+.|++++|++. +.+|..+
T Consensus       183 ~~~~--~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~  258 (487)
T 3oja_A          183 DVKG--QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFF  258 (487)
T ss_dssp             EEEC--CCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCBCHHHHHHHH
T ss_pred             cccc--cccCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCc-ccchhhccCCCCCEEEcCCCCCcCcchHHHH
Confidence            6633  3468999999999999994 5556889999999999999999 47888999999999999999998 5677888


Q ss_pred             cccccCceeecc
Q 046712          543 ENLSFLLFLNMS  554 (566)
Q Consensus       543 ~~l~~L~~L~l~  554 (566)
                      ..++.|+.++++
T Consensus       259 ~~l~~L~~l~~~  270 (487)
T 3oja_A          259 SKNQRVQTVAKQ  270 (487)
T ss_dssp             TTCHHHHHHHHH
T ss_pred             HhCCCCcEEecc
Confidence            888999888886

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.92  E-value=4.8e-25  Score=211.63  Aligned_cols=239  Identities=18%  Similarity=0.166  Sum_probs=197.8

Q ss_pred             CCCEEEccCCeeeeecchhHhhhccCCcEEEccCCCCCCCcchhhhccCCCCeecccCCcccccccccccCCCCCCEEEc
Q 046712          305 KLEVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQISDTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSIQILFL  384 (566)
Q Consensus       305 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l  384 (566)
                      +++..+++++.+... +..+....++|++|++++|.+++..+..+..+++|++|++++|.+++..+  +..+++|++|++
T Consensus        11 ~l~i~~ls~~~l~~~-~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~L   87 (317)
T 3o53_A           11 RYKIEKVTDSSLKQA-LASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDL   87 (317)
T ss_dssp             EEEEESCCTTTHHHH-HHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEEC
T ss_pred             ceeEeeccccchhhh-HHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEEC
Confidence            345555666655422 33344445799999999999998888899999999999999999986554  889999999999


Q ss_pred             cCCcccccCCccccCCCCCCeEeccCccccccCCCCCcCCCCCcEEEccCCcceeccchhhhhhcccceEEEccCCcccc
Q 046712          385 NENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSNGNCQNLILLTTRKNKLSGIVPRQLLRIITLSVLLDLSDNLLSG  464 (566)
Q Consensus       385 ~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~  464 (566)
                      ++|.+++. +    ..++|++|++++|.+.+..+.   .+++|++|++++|.+.+..+..+..+..+ +.|++++|.+.+
T Consensus        88 s~n~l~~l-~----~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L-~~L~Ls~N~l~~  158 (317)
T 3o53_A           88 NNNYVQEL-L----VGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRV-QYLDLKLNEIDT  158 (317)
T ss_dssp             CSSEEEEE-E----ECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSE-EEEECTTSCCCE
T ss_pred             cCCccccc-c----CCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCC-CEEECCCCCCCc
Confidence            99998732 2    348999999999999865543   36889999999999997766666666555 999999999998


Q ss_pred             cCCcCc-cCCCCCCEEeCccccccccCCccccCCCCCcEEeCCCCcccccCCcCCcCCCCCCEEeCCCCccccccCcccc
Q 046712          465 HFPTKV-GNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTISIPSTLSSLKSITELDLSRNNLSGHIPQYLE  543 (566)
Q Consensus       465 ~~~~~~-~~~~~L~~L~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~  543 (566)
                      ..+..+ ..+++|++|++++|.+.+. +. ...+++|++|++++|.++. ++..+..+++|++|++++|++. .+|..+.
T Consensus       159 ~~~~~~~~~l~~L~~L~L~~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~  234 (317)
T 3o53_A          159 VNFAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALR  234 (317)
T ss_dssp             EEGGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCC
T ss_pred             ccHHHHhhccCcCCEEECCCCcCccc-cc-ccccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCccc-chhhHhh
Confidence            776666 4789999999999999854 33 3458999999999999995 5666999999999999999999 5788899


Q ss_pred             ccccCceeecccCcCc
Q 046712          544 NLSFLLFLNMSYNHFE  559 (566)
Q Consensus       544 ~l~~L~~L~l~~n~~~  559 (566)
                      .+++|+.|++++|+++
T Consensus       235 ~l~~L~~L~l~~N~~~  250 (317)
T 3o53_A          235 FSQNLEHFDLRGNGFH  250 (317)
T ss_dssp             CCTTCCEEECTTCCCB
T ss_pred             cCCCCCEEEccCCCcc
Confidence            9999999999999998

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.92  E-value=1.4e-23  Score=196.54  Aligned_cols=215  Identities=18%  Similarity=0.229  Sum_probs=169.8

Q ss_pred             CCCCcccccccCCCCCcEEEEEcCCCccccccCccCcCCCCCCEEecCCCcccccCCcccCCCCCCCEEeCCCCcCCCcC
Q 046712           19 INLCQWTGVTCGHRRQRVTGLDLRHQSVGGVLSPFVGNLNFLRSINLPNNSFRGKIPHEVGNLFRLQNLTLTNNYFLGKI   98 (566)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~l~l~~~~i~~~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~   98 (566)
                      .++|.|.++.|.-. ...+.++++++.++. +|..+.  +++++|++++|.++...+.+|.++++|++|++++|.++...
T Consensus         2 ~~~C~~~~~~C~c~-~~~~~l~~~~~~l~~-ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~   77 (270)
T 2o6q_A            2 EALCKKDGGVCSCN-NNKNSVDCSSKKLTA-IPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLP   77 (270)
T ss_dssp             CCCBGGGTCSBEEE-TTTTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCC
T ss_pred             CccCCCCCCCCEeC-CCCCEEEccCCCCCc-cCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeC
Confidence            46899999988643 567789999999985 444443  68999999999998666778999999999999999998777


Q ss_pred             ccccccCCCCcEEEcCCCcCCCCcchhccCCCCCCEEecccccCCCCCCccccCCCCCCEEEccCCcCcccCCcccccCC
Q 046712           99 LTDLSHCSNLMKFEASNNKLEGEIPVKISNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVR  178 (566)
Q Consensus        99 ~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~  178 (566)
                      +..|.++++|++|++++|.+....+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+....+..+..++
T Consensus        78 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~  157 (270)
T 2o6q_A           78 AGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLT  157 (270)
T ss_dssp             TTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred             hhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCc
Confidence            77788999999999999999877777788999999999999999877777788999999999999999866556688889


Q ss_pred             cccEeecccccceecCC-cccCcccCceEecccccccccCCCCCCCCCCCCcEEEcccccc
Q 046712          179 NLISFNVAYNQFSGMIP-PIYNISSLQYIFIHTNRFHGSVPLDNGVNLPNLRYFSISGNNL  238 (566)
Q Consensus       179 ~L~~L~l~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  238 (566)
                      +|+.|++++|.+....+ .+..+++|++|++++|.+. .++...+..+++|+.|++++|.+
T Consensus       158 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~N~~  217 (270)
T 2o6q_A          158 SLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLK-RVPEGAFDSLEKLKMLQLQENPW  217 (270)
T ss_dssp             TCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSSCB
T ss_pred             ccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCC-cCCHHHhccccCCCEEEecCCCe
Confidence            99999998888776655 3555666666666666655 33333333555666666665544

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.92  E-value=1.7e-26  Score=221.18  Aligned_cols=265  Identities=18%  Similarity=0.163  Sum_probs=157.3

Q ss_pred             CCCcCCCCCCcccccccCCCCCcEEEEEcCCCccccccCccCcCCCCCCEEecCCCcccc-cCCcccC-------CCCCC
Q 046712           13 SSWNNSINLCQWTGVTCGHRRQRVTGLDLRHQSVGGVLSPFVGNLNFLRSINLPNNSFRG-KIPHEVG-------NLFRL   84 (566)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~i~~~~~~~~~~l~~L~~L~ls~~~l~~-~~~~~~~-------~l~~L   84 (566)
                      ..|.....|+.+..+......++++++++++|.+  .+|..+...  |++|++++|.+.. .+|..+.       ++++|
T Consensus        22 ~~~~~~~~c~~~~~~~~~~~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L   97 (312)
T 1wwl_A           22 PDWSSAFNCLGAADVELYGGGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGL   97 (312)
T ss_dssp             CCGGGGGGSSSCSEEEEEEEEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCC
T ss_pred             cchHHHhhhhccccEEEEccCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCc
Confidence            3566555665555443322235666777777777  444444433  7777777777742 3554444       67778


Q ss_pred             CEEeCCCCcCCCcCcccc--ccCCCCcEEEcCCCcCCCCcchhccCC-----CCCCEEecccccCCCCCCccccCCCCCC
Q 046712           85 QNLTLTNNYFLGKILTDL--SHCSNLMKFEASNNKLEGEIPVKISNL-----LMLQILNIAENHLKGQLPASIGNLSALQ  157 (566)
Q Consensus        85 ~~L~l~~~~l~~~~~~~~--~~l~~L~~L~l~~~~~~~~~~~~l~~l-----~~L~~L~l~~~~~~~~~~~~~~~l~~L~  157 (566)
                      ++|++++|.+++..+..+  ..+++|++|++++|++++. |..+..+     ++|++|++++|.+.+..+..++.+++|+
T Consensus        98 ~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~  176 (312)
T 1wwl_A           98 QELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALS  176 (312)
T ss_dssp             CEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCC
T ss_pred             cEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCC
Confidence            888888777776666654  6777788888877777754 5555555     7777777777777766667777777777


Q ss_pred             EEEccCCcCccc--CCccc--ccCCcccEeecccccceecCC----cccCcccCceEecccccccccCCCCCCCCCCCCc
Q 046712          158 EIDVRGNRLGGR--IPSTI--SHVRNLISFNVAYNQFSGMIP----PIYNISSLQYIFIHTNRFHGSVPLDNGVNLPNLR  229 (566)
Q Consensus       158 ~L~l~~~~i~~~--~~~~l--~~l~~L~~L~l~~~~~~~~~~----~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~  229 (566)
                      +|++++|.+.+.  .+..+  ..+++|++|++++|.+.....    .+..+++|++|++++|.+.+..+......+++|+
T Consensus       177 ~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~  256 (312)
T 1wwl_A          177 TLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLN  256 (312)
T ss_dssp             EEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCC
T ss_pred             EEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCC
Confidence            777777776533  22333  667777777777776653221    1224556666666666665444333333455666


Q ss_pred             EEEcccccccccCcccccccCCCCeeecccccccccccccccCCCCCcEEECCCCccC
Q 046712          230 YFSISGNNLTGSLQDSLSNATNLQGLEINRNLFSGKVSINFSRLQNLSRLNLGENNLG  287 (566)
Q Consensus       230 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  287 (566)
                      +|++++|.++ ..+..+.  ++|+.|++++|.+++. +. +..+++|++|++++|.+.
T Consensus       257 ~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~  309 (312)
T 1wwl_A          257 SLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFL  309 (312)
T ss_dssp             EEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTT
T ss_pred             EEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCC
Confidence            6666666555 2233222  4555555555555433 22 444555555555555443

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.91  E-value=4.8e-23  Score=213.06  Aligned_cols=269  Identities=25%  Similarity=0.285  Sum_probs=184.6

Q ss_pred             CCCcEEEcccccccccCcccccccCCCCeeecccccccccccccccCCCCCcEEECCCCccCCcCCCChhhhhhccCCCC
Q 046712          226 PNLRYFSISGNNLTGSLQDSLSNATNLQGLEINRNLFSGKVSINFSRLQNLSRLNLGENNLGTGTTNDLDFITLLTNCTK  305 (566)
Q Consensus       226 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~  305 (566)
                      .+++.|+++++.++ .++..+.  ++|+.|++++|.++....    .+++|++|++++|.+...+.          .+++
T Consensus        40 ~~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~~lp~----~l~~L~~L~Ls~N~l~~lp~----------~l~~  102 (622)
T 3g06_A           40 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTSLPA----LPPELRTLEVSGNQLTSLPV----------LPPG  102 (622)
T ss_dssp             HCCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCSCCCC----CCTTCCEEEECSCCCSCCCC----------CCTT
T ss_pred             CCCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCCCCCC----cCCCCCEEEcCCCcCCcCCC----------CCCC
Confidence            35788888888887 3444333  688888888888774333    56788888888888765432          5678


Q ss_pred             CCEEEccCCeeeeecchhHhhhccCCcEEEccCCCCCCCcchhhhccCCCCeecccCCcccccccccccCCCCCCEEEcc
Q 046712          306 LEVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQISDTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSIQILFLN  385 (566)
Q Consensus       306 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  385 (566)
                      |+.|++++|.+.+...     .+++|+.|++++|.++. +|..   +++|++|++++|.+++. +.   .+++|+.|+++
T Consensus       103 L~~L~Ls~N~l~~l~~-----~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~l-~~---~~~~L~~L~L~  169 (622)
T 3g06_A          103 LLELSIFSNPLTHLPA-----LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLASL-PA---LPSELCKLWAY  169 (622)
T ss_dssp             CCEEEECSCCCCCCCC-----CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSCC-CC---CCTTCCEEECC
T ss_pred             CCEEECcCCcCCCCCC-----CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCCc-CC---ccCCCCEEECC
Confidence            8888888888775432     34778888888888775 3432   47788888888887743 32   34678888888


Q ss_pred             CCcccccCCccccCCCCCCeEeccCccccccCCCCCcCCCCCcEEEccCCcceeccchhhhhhcccceEEEccCCccccc
Q 046712          386 ENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSNGNCQNLILLTTRKNKLSGIVPRQLLRIITLSVLLDLSDNLLSGH  465 (566)
Q Consensus       386 ~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~  465 (566)
                      +|.++. ++   ..+++|+.|++++|.+.+ ++.   ..++|+.|++++|.+.. ++.    ..+.++.|++++|.+.+ 
T Consensus       170 ~N~l~~-l~---~~~~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~-l~~----~~~~L~~L~Ls~N~L~~-  235 (622)
T 3g06_A          170 NNQLTS-LP---MLPSGLQELSVSDNQLAS-LPT---LPSELYKLWAYNNRLTS-LPA----LPSGLKELIVSGNRLTS-  235 (622)
T ss_dssp             SSCCSC-CC---CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSS-CCC----CCTTCCEEECCSSCCSC-
T ss_pred             CCCCCC-Cc---ccCCCCcEEECCCCCCCC-CCC---ccchhhEEECcCCcccc-cCC----CCCCCCEEEccCCccCc-
Confidence            888873 44   346778888888888773 333   24678888888887763 222    22445777777777764 


Q ss_pred             CCcCccCCCCCCEEeCccccccccCCccccCCCCCcEEeCCCCcccccCCcCCcCCCCCCEEeCCCCccccccCcccccc
Q 046712          466 FPTKVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTISIPSTLSSLKSITELDLSRNNLSGHIPQYLENL  545 (566)
Q Consensus       466 ~~~~~~~~~~L~~L~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l  545 (566)
                      .+   ..+++|+.|++++|.+. .+|.   .+++|++|+|++|.++ .+|..+..+++|+.|+|++|++.+.+|..+..+
T Consensus       236 lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L  307 (622)
T 3g06_A          236 LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREI  307 (622)
T ss_dssp             CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHH
T ss_pred             CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHhc
Confidence            22   34567777777777776 4444   4577777777777777 567777777777777777777777666665554


Q ss_pred             c
Q 046712          546 S  546 (566)
Q Consensus       546 ~  546 (566)
                      +
T Consensus       308 ~  308 (622)
T 3g06_A          308 T  308 (622)
T ss_dssp             H
T ss_pred             c
Confidence            4

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.91  E-value=1.5e-23  Score=197.25  Aligned_cols=208  Identities=19%  Similarity=0.206  Sum_probs=143.7

Q ss_pred             ccCCcEEEccCCCCCCCcchhhhccCCCCeecccCCcccccccccccCCCCCCEEEccCCcccccCCccccCCCCCCeEe
Q 046712          328 STTMTEIAIGSNQISDTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSIQILFLNENFLRGTIPSSLGNLTLLTQLI  407 (566)
Q Consensus       328 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~  407 (566)
                      ++.+++|++++|.+++..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|+
T Consensus        27 ~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  106 (276)
T 2z62_A           27 PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV  106 (276)
T ss_dssp             CTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEE
T ss_pred             CCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEE
Confidence            35788888888888766666777888888888888888766666778888888888888888766667788888888888


Q ss_pred             ccCccccccCCCCCcCCCCCcEEEccCCcceec-cchhhhhhcccceEEEccCCcccccCCcCccCCCCCC----EEeCc
Q 046712          408 LEVNNLQGKIPPSNGNCQNLILLTTRKNKLSGI-VPRQLLRIITLSVLLDLSDNLLSGHFPTKVGNLKNLV----SLDIS  482 (566)
Q Consensus       408 l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~----~L~ls  482 (566)
                      +++|.+.+..+..+..+++|++|++++|.+.+. +|..+..+..+ +.|++++|.+.+..+..+..+++|+    +|+++
T Consensus       107 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L-~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls  185 (276)
T 2z62_A          107 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNL-EHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLS  185 (276)
T ss_dssp             CTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTC-CEEECCSSCCCEECGGGGHHHHTCTTCCEEEECC
T ss_pred             CCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCC-CEEECCCCCCCcCCHHHhhhhhhccccceeeecC
Confidence            888888766666677888888888888877653 35555554444 6666766666655555555444444    66666


Q ss_pred             cccccccCCccccCCCCCcEEeCCCCcccccCCcCCcCCCCCCEEeCCCCccccc
Q 046712          483 SNMFSGEIPTTLGGCTSLEYLGMQDNSFTISIPSTLSSLKSITELDLSRNNLSGH  537 (566)
Q Consensus       483 ~~~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~  537 (566)
                      +|++.+..+..+. ..+|++|++++|.++...++.+..+++|+.|++++|++...
T Consensus       186 ~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  239 (276)
T 2z62_A          186 LNPMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS  239 (276)
T ss_dssp             SSCCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCC
T ss_pred             CCcccccCccccC-CCcccEEECCCCceeecCHhHhcccccccEEEccCCccccc
Confidence            6666643333333 34666666666666654444556666666666666666643

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.91  E-value=1.1e-23  Score=213.90  Aligned_cols=216  Identities=19%  Similarity=0.175  Sum_probs=189.1

Q ss_pred             cCCcEEEccCCCCCCCcchhhhccCCCCeecccCCcccccccccccCCCCCCEEEccCCcccccCCccccCCCCCCeEec
Q 046712          329 TTMTEIAIGSNQISDTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSIQILFLNENFLRGTIPSSLGNLTLLTQLIL  408 (566)
Q Consensus       329 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l  408 (566)
                      ++|+.|++++|.+.+..|..+..+++|++|++++|.+++..+  +..+++|++|++++|.+++..     ..++|+.|++
T Consensus        34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-----~~~~L~~L~L  106 (487)
T 3oja_A           34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIETLHA  106 (487)
T ss_dssp             GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEE-----ECTTCCEEEC
T ss_pred             CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCC-----CCCCcCEEEC
Confidence            589999999999998888899999999999999999987655  889999999999999987432     2489999999


Q ss_pred             cCccccccCCCCCcCCCCCcEEEccCCcceeccchhhhhhcccceEEEccCCcccccCCcCcc-CCCCCCEEeCcccccc
Q 046712          409 EVNNLQGKIPPSNGNCQNLILLTTRKNKLSGIVPRQLLRIITLSVLLDLSDNLLSGHFPTKVG-NLKNLVSLDISSNMFS  487 (566)
Q Consensus       409 ~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~-~~~~L~~L~ls~~~l~  487 (566)
                      ++|.+.+..+.   .+++|+.|++++|.+.+..+..+..+..+ +.|++++|.+.+..+..+. .+++|+.|++++|.+.
T Consensus       107 ~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L-~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~  182 (487)
T 3oja_A          107 ANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRV-QYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY  182 (487)
T ss_dssp             CSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSE-EEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC
T ss_pred             cCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCC-CEEECCCCCCCCcChHHHhhhCCcccEEecCCCccc
Confidence            99999866554   46899999999999998877777776666 9999999999988777775 7999999999999998


Q ss_pred             ccCCccccCCCCCcEEeCCCCcccccCCcCCcCCCCCCEEeCCCCccccccCccccccccCceeecccCcCc
Q 046712          488 GEIPTTLGGCTSLEYLGMQDNSFTISIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLLFLNMSYNHFE  559 (566)
Q Consensus       488 ~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~  559 (566)
                      +..+  +..+++|++|+|++|.+++ +|..+..+++|+.|++++|.+. .+|..+..+++|+.|++++|+++
T Consensus       183 ~~~~--~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~l~~N~l~  250 (487)
T 3oja_A          183 DVKG--QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFH  250 (487)
T ss_dssp             EEEC--CCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCBC
T ss_pred             cccc--cccCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCc-ccchhhccCCCCCEEEcCCCCCc
Confidence            5533  4468999999999999995 5556899999999999999999 47888999999999999999987

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.90  E-value=1.5e-22  Score=189.59  Aligned_cols=204  Identities=23%  Similarity=0.271  Sum_probs=148.9

Q ss_pred             cCCcEEEccCCCCCCCcchhhhccCCCCeecccCCcccccccccccCCCCCCEEEccCCcccccCCccccCCCCCCeEec
Q 046712          329 TTMTEIAIGSNQISDTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSIQILFLNENFLRGTIPSSLGNLTLLTQLIL  408 (566)
Q Consensus       329 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l  408 (566)
                      ...+.++++++.++. +|..+.  +++++|++++|.+.+..+..+..+++|++|++++|.++...+..|..+++|++|++
T Consensus        16 ~~~~~l~~~~~~l~~-ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l   92 (270)
T 2o6q_A           16 NNKNSVDCSSKKLTA-IPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWV   92 (270)
T ss_dssp             TTTTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEEC
T ss_pred             CCCCEEEccCCCCCc-cCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEEC
Confidence            457788888888874 454332  67889999999888777677888889999999998888555556788888999999


Q ss_pred             cCccccccCCCCCcCCCCCcEEEccCCcceeccchhhhhhcccceEEEccCCcccccCCcCccCCCCCCEEeCccccccc
Q 046712          409 EVNNLQGKIPPSNGNCQNLILLTTRKNKLSGIVPRQLLRIITLSVLLDLSDNLLSGHFPTKVGNLKNLVSLDISSNMFSG  488 (566)
Q Consensus       409 ~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~l~~  488 (566)
                      ++|.+.+..+..+..+++|++|++++|.+.+..+..+..+..+ +.|++++|.+.+..+..|..+++|++|++++|.+.+
T Consensus        93 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L-~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~  171 (270)
T 2o6q_A           93 TDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKL-TYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKR  171 (270)
T ss_dssp             CSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTC-CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred             CCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCC-CEEECCCCcCCccCHhHccCCcccceeEecCCcCcE
Confidence            9888886666677888888888888888776555544444444 777777777766555556677777777777777765


Q ss_pred             cCCccccCCCCCcEEeCCCCcccccCCcCCcCCCCCCEEeCCCCcccc
Q 046712          489 EIPTTLGGCTSLEYLGMQDNSFTISIPSTLSSLKSITELDLSRNNLSG  536 (566)
Q Consensus       489 ~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~  536 (566)
                      ..+..|..+++|++|++++|.++...+..+..+++|+.|++++|++..
T Consensus       172 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c  219 (270)
T 2o6q_A          172 VPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDC  219 (270)
T ss_dssp             CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             eChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeC
Confidence            555556667777777777777765555556667777777777776653

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.90  E-value=9.5e-23  Score=191.79  Aligned_cols=204  Identities=22%  Similarity=0.246  Sum_probs=121.9

Q ss_pred             CcEEEEEcCCCccccccCccCcCCCCCCEEecCCCcccccCCcccCCCCCCCEEeCCCCcCCCcCccccccCCCCcEEEc
Q 046712           34 QRVTGLDLRHQSVGGVLSPFVGNLNFLRSINLPNNSFRGKIPHEVGNLFRLQNLTLTNNYFLGKILTDLSHCSNLMKFEA  113 (566)
Q Consensus        34 ~~~~~l~l~~~~i~~~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l  113 (566)
                      +.+++|++++|.+++..+..|.++++|++|++++|.+++..+.+|.++++|++|++++|.++...+..|.++++|++|++
T Consensus        28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  107 (276)
T 2z62_A           28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA  107 (276)
T ss_dssp             TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred             CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence            35667777777666666656666777777777777666555556666677777777777666655566666677777777


Q ss_pred             CCCcCCCCcchhccCCCCCCEEecccccCCC-CCCccccCCCCCCEEEccCCcCcccCCcccccCCccc----Eeecccc
Q 046712          114 SNNKLEGEIPVKISNLLMLQILNIAENHLKG-QLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLI----SFNVAYN  188 (566)
Q Consensus       114 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~----~L~l~~~  188 (566)
                      ++|.+.+..+..+..+++|++|++++|.+.+ .+|..+..+++|++|++++|.+++..+..+..+++|+    .|++++|
T Consensus       108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n  187 (276)
T 2z62_A          108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN  187 (276)
T ss_dssp             TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSS
T ss_pred             CCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCC
Confidence            7666665444456666667777777666653 2466666666667777666666655455555555554    5556666


Q ss_pred             cceecCCcccCcccCceEecccccccccCCCCCCCCCCCCcEEEcccccc
Q 046712          189 QFSGMIPPIYNISSLQYIFIHTNRFHGSVPLDNGVNLPNLRYFSISGNNL  238 (566)
Q Consensus       189 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  238 (566)
                      .+....+......+|++|++++|.++ .++...+..+++|++|++++|.+
T Consensus       188 ~l~~~~~~~~~~~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~l~~N~~  236 (276)
T 2z62_A          188 PMNFIQPGAFKEIRLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPW  236 (276)
T ss_dssp             CCCEECTTSSCSCCEEEEECCSSCCS-CCCTTTTTTCCSCCEEECCSSCB
T ss_pred             cccccCccccCCCcccEEECCCCcee-ecCHhHhcccccccEEEccCCcc
Confidence            55554443333334555555555444 23333333444444444444443

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.89  E-value=1e-22  Score=190.83  Aligned_cols=202  Identities=24%  Similarity=0.220  Sum_probs=115.5

Q ss_pred             ccCCCCeecccCCcccccccccccCCCCCCEEEccCCcccccCCccccCCCCCCeEeccCccccccCCCCCcCCCCCcEE
Q 046712          351 NLVNLNALGVESNQLAGTIPLAIGELKSIQILFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSNGNCQNLILL  430 (566)
Q Consensus       351 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L  430 (566)
                      .+++|++|++++|.+...  ..+..+++|++|++++|.+++  ...+..+++|++|++++|.+.+..+..+..+++|++|
T Consensus        39 ~l~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~~--~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  114 (272)
T 3rfs_A           39 ELNSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLHD--ISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKEL  114 (272)
T ss_dssp             HHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCCC--CGGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred             cccceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCCC--chhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEE
Confidence            344444444444444321  123444444444444444442  1234444444444444444443333334444455555


Q ss_pred             EccCCcceeccchhhhhhcccceEEEccCCcccccCCcCccCCCCCCEEeCccccccccCCccccCCCCCcEEeCCCCcc
Q 046712          431 TTRKNKLSGIVPRQLLRIITLSVLLDLSDNLLSGHFPTKVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSF  510 (566)
Q Consensus       431 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~~  510 (566)
                      ++++|.+.+..+..+..+..+ +.|++++|.+.+..+..+..+++|+.|++++|++.+..+..+..+++|++|++++|.+
T Consensus       115 ~L~~n~l~~~~~~~~~~l~~L-~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l  193 (272)
T 3rfs_A          115 VLVENQLQSLPDGVFDKLTNL-TYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQL  193 (272)
T ss_dssp             ECTTSCCCCCCTTTTTTCTTC-CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             ECCCCcCCccCHHHhccCCCC-CEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcC
Confidence            555544443333333333332 5555555555545555566777788888888877755555667777888888888877


Q ss_pred             cccCCcCCcCCCCCCEEeCCCCccccccCccccccccCceeecccCcCcccCCC
Q 046712          511 TISIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLLFLNMSYNHFEGKVPI  564 (566)
Q Consensus       511 ~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~  564 (566)
                      ++..++.+..+++|+.|++++|++.+.       +++|+.+++++|.++|.+|.
T Consensus       194 ~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~~g~ip~  240 (272)
T 3rfs_A          194 KSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRN  240 (272)
T ss_dssp             SCCCTTTTTTCTTCCEEECCSSCBCCC-------TTTTHHHHHHHHHTGGGBBC
T ss_pred             CccCHHHHhCCcCCCEEEccCCCcccc-------CcHHHHHHHHHHhCCCcccC
Confidence            766666677778888888888776632       45677777777777777775

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.88  E-value=6.6e-22  Score=186.60  Aligned_cols=199  Identities=21%  Similarity=0.186  Sum_probs=140.7

Q ss_pred             cCCcEEEccCCCCCCCcchhhhccCCCCeecccCCcccccccccccCCCCCCEEEccCCcccccCCccccCCCCCCeEec
Q 046712          329 TTMTEIAIGSNQISDTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSIQILFLNENFLRGTIPSSLGNLTLLTQLIL  408 (566)
Q Consensus       329 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l  408 (566)
                      +.++++++.++.++. +|..+  .++++.|++++|.+++..+..+..+++|++|++++|.+++..+  ...+++|++|++
T Consensus        10 ~~l~~l~~~~~~l~~-ip~~~--~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L   84 (290)
T 1p9a_G           10 ASHLEVNCDKRNLTA-LPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVLGTLDL   84 (290)
T ss_dssp             TTCCEEECTTSCCSS-CCSCC--CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTCCEEEC
T ss_pred             CCccEEECCCCCCCc-CCCCC--CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCcCCEEEC
Confidence            678888888888874 44433  2678888888888887777778888888888888888874322  267788888888


Q ss_pred             cCccccccCCCCCcCCCCCcEEEccCCcceeccchhhhhhcccceEEEccCCcccccCCcCccCCCCCCEEeCccccccc
Q 046712          409 EVNNLQGKIPPSNGNCQNLILLTTRKNKLSGIVPRQLLRIITLSVLLDLSDNLLSGHFPTKVGNLKNLVSLDISSNMFSG  488 (566)
Q Consensus       409 ~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~l~~  488 (566)
                      ++|.+. .+|..+..+++|++|++++|++.+..+..+..+..+ +.|++++|.+.+..+..|..+++|+.|++++|++..
T Consensus        85 s~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L-~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~  162 (290)
T 1p9a_G           85 SHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGEL-QELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTE  162 (290)
T ss_dssp             CSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTC-CEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSC
T ss_pred             CCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCC-CEEECCCCCCCccChhhcccccCCCEEECCCCcCCc
Confidence            888887 566677778888888888888775554555554444 667777777766655666666777777777777664


Q ss_pred             cCCccccCCCCCcEEeCCCCcccccCCcCCcCCCCCCEEeCCCCccc
Q 046712          489 EIPTTLGGCTSLEYLGMQDNSFTISIPSTLSSLKSITELDLSRNNLS  535 (566)
Q Consensus       489 ~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~  535 (566)
                      ..+..|..+++|++|++++|.++ .+|.++..+++|+.|++++|++.
T Consensus       163 l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~  208 (290)
T 1p9a_G          163 LPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL  208 (290)
T ss_dssp             CCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred             cCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCcc
Confidence            44445566677777777777766 56666666667777777776665

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.88  E-value=4.4e-23  Score=200.28  Aligned_cols=251  Identities=16%  Similarity=0.162  Sum_probs=164.7

Q ss_pred             CCEEEccCCeeeeecchhHhhh-ccCCcEEEccCCCCCCCcchhhhccCCCCeecccCCccccc-ccccccCCCCCCEEE
Q 046712          306 LEVLDLHSNRFGGVLPFSLANL-STTMTEIAIGSNQISDTIPDVIANLVNLNALGVESNQLAGT-IPLAIGELKSIQILF  383 (566)
Q Consensus       306 L~~L~l~~~~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~  383 (566)
                      ++.++++++.+.   +..+... .+.++.+++.++.+.+..+. +..+++|++|++++|.+.+. .+..+..+++|++|+
T Consensus        49 ~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~  124 (336)
T 2ast_B           49 WQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLS  124 (336)
T ss_dssp             SSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEE
T ss_pred             heeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEe
Confidence            555555555443   1122211 25666666666666554443 34567777777777776644 555666777777777


Q ss_pred             ccCCcccccCCccccCCCCCCeEeccCc-ccccc-CCCCCcCCCCCcEEEccCC-cceec-cchhhhhhcccceEEEccC
Q 046712          384 LNENFLRGTIPSSLGNLTLLTQLILEVN-NLQGK-IPPSNGNCQNLILLTTRKN-KLSGI-VPRQLLRIITLSVLLDLSD  459 (566)
Q Consensus       384 l~~n~~~~~~~~~~~~~~~L~~L~l~~~-~l~~~-~~~~~~~~~~L~~L~l~~~-~~~~~-~~~~~~~~~~~l~~L~l~~  459 (566)
                      +++|.+++..+..+..+++|++|++++| .+++. ++..+..+++|++|++++| .+.+. ++..+..++..++.|++++
T Consensus       125 L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~  204 (336)
T 2ast_B          125 LEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSG  204 (336)
T ss_dssp             CTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCS
T ss_pred             CcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCC
Confidence            7777776656666667777777777777 45432 3444566777777777777 66644 3444444542447888888


Q ss_pred             C--ccc-ccCCcCccCCCCCCEEeCcccc-ccccCCccccCCCCCcEEeCCCCc-ccccCCcCCcCCCCCCEEeCCCCcc
Q 046712          460 N--LLS-GHFPTKVGNLKNLVSLDISSNM-FSGEIPTTLGGCTSLEYLGMQDNS-FTISIPSTLSSLKSITELDLSRNNL  534 (566)
Q Consensus       460 ~--~~~-~~~~~~~~~~~~L~~L~ls~~~-l~~~~~~~~~~~~~L~~L~L~~n~-~~~~~~~~l~~l~~L~~L~l~~n~~  534 (566)
                      |  .++ +..+..+..+++|++|++++|. +++..+..+..+++|++|++++|. +.......+..+++|+.|++++| +
T Consensus       205 ~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i  283 (336)
T 2ast_B          205 YRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-V  283 (336)
T ss_dssp             CGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-S
T ss_pred             CcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-c
Confidence            7  343 2334455678889999999988 666667778888999999999884 43333346778899999999988 3


Q ss_pred             ccccCcccccc-ccCceeecccCcCcccCCC
Q 046712          535 SGHIPQYLENL-SFLLFLNMSYNHFEGKVPI  564 (566)
Q Consensus       535 ~~~~~~~l~~l-~~L~~L~l~~n~~~~~~p~  564 (566)
                      .   .+.+..+ .+|+.|++++|.+++..|.
T Consensus       284 ~---~~~~~~l~~~l~~L~l~~n~l~~~~~~  311 (336)
T 2ast_B          284 P---DGTLQLLKEALPHLQINCSHFTTIARP  311 (336)
T ss_dssp             C---TTCHHHHHHHSTTSEESCCCSCCTTCS
T ss_pred             C---HHHHHHHHhhCcceEEecccCccccCC
Confidence            2   2344444 3477788899999988875

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.87  E-value=1.5e-23  Score=205.23  Aligned_cols=253  Identities=19%  Similarity=0.170  Sum_probs=151.5

Q ss_pred             EECCCCccCCcCCCChhhhhhccCCCCCCEEEccCCeeeeecc----hhHhhhccCCcEEEccCCCCCCCcchhhhcc--
Q 046712          279 LNLGENNLGTGTTNDLDFITLLTNCTKLEVLDLHSNRFGGVLP----FSLANLSTTMTEIAIGSNQISDTIPDVIANL--  352 (566)
Q Consensus       279 L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l--  352 (566)
                      ++++++.+....+      ..+...++|+.|++++|.+.+..+    ..+...+..|++|++++|.+++..+..+..+  
T Consensus         3 ~~ls~n~~~~~~~------~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~   76 (362)
T 3goz_A            3 YKLTLHPGSNPVE------EFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILA   76 (362)
T ss_dssp             EECCCCTTCCHHH------HHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHH
T ss_pred             cccccccchHHHH------HHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHh
Confidence            4566665554322      334445558888888888876655    3343332378888888888776656555554  


Q ss_pred             ---CCCCeecccCCccccccccc----ccCC-CCCCEEEccCCcccccCCcc----ccC-CCCCCeEeccCccccccCCC
Q 046712          353 ---VNLNALGVESNQLAGTIPLA----IGEL-KSIQILFLNENFLRGTIPSS----LGN-LTLLTQLILEVNNLQGKIPP  419 (566)
Q Consensus       353 ---~~L~~L~l~~~~~~~~~~~~----~~~~-~~L~~L~l~~n~~~~~~~~~----~~~-~~~L~~L~l~~~~l~~~~~~  419 (566)
                         ++|++|++++|.+++..+..    +..+ ++|++|++++|.+++..+..    +.. .++|++|++++|.+.+..+.
T Consensus        77 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~  156 (362)
T 3goz_A           77 AIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSD  156 (362)
T ss_dssp             TSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHH
T ss_pred             ccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHH
Confidence               77888888888877555443    3334 67888888888876544433    233 25778888887777643322


Q ss_pred             ----CCcCCC-CCcEEEccCCcceeccchhhhhh----cccceEEEccCCcccccCC----cCccC-CCCCCEEeCcccc
Q 046712          420 ----SNGNCQ-NLILLTTRKNKLSGIVPRQLLRI----ITLSVLLDLSDNLLSGHFP----TKVGN-LKNLVSLDISSNM  485 (566)
Q Consensus       420 ----~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~----~~~l~~L~l~~~~~~~~~~----~~~~~-~~~L~~L~ls~~~  485 (566)
                          .+..++ +|++|++++|.+.+..+..+...    +..++.|++++|.+.+...    ..+.. .++|++|++++|.
T Consensus       157 ~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~  236 (362)
T 3goz_A          157 ELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNC  236 (362)
T ss_dssp             HHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSC
T ss_pred             HHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCC
Confidence                223343 77777777777765555444332    2244677777776664322    22323 3467777777776


Q ss_pred             ccccCC----ccccCCCCCcEEeCCCCcccc-------cCCcCCcCCCCCCEEeCCCCccccc
Q 046712          486 FSGEIP----TTLGGCTSLEYLGMQDNSFTI-------SIPSTLSSLKSITELDLSRNNLSGH  537 (566)
Q Consensus       486 l~~~~~----~~~~~~~~L~~L~L~~n~~~~-------~~~~~l~~l~~L~~L~l~~n~~~~~  537 (566)
                      +.+..+    ..+..+++|++|++++|.+..       .+++.+..+++|+.||+++|++...
T Consensus       237 l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~  299 (362)
T 3goz_A          237 LHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS  299 (362)
T ss_dssp             CCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred             CCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence            664332    234556667777777776332       1234556666677777777766644

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.87  E-value=2.2e-21  Score=181.71  Aligned_cols=208  Identities=20%  Similarity=0.242  Sum_probs=115.4

Q ss_pred             CcCCCCCCEEecCCCcccccCCcccCCCCCCCEEeCCCCcCCCcCccccccCCCCcEEEcCCCcCCCCcchhccCCCCCC
Q 046712           54 VGNLNFLRSINLPNNSFRGKIPHEVGNLFRLQNLTLTNNYFLGKILTDLSHCSNLMKFEASNNKLEGEIPVKISNLLMLQ  133 (566)
Q Consensus        54 ~~~l~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~  133 (566)
                      +..+++|+.|++++|.++ .+ ..+..+++|++|++++|.+++.  ..+..+++|++|++++|.+++..+..+.++++|+
T Consensus        37 ~~~l~~L~~L~l~~~~i~-~~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  112 (272)
T 3rfs_A           37 QNELNSIDQIIANNSDIK-SV-QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLK  112 (272)
T ss_dssp             HHHHTTCCEEECTTSCCC-CC-TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred             cccccceeeeeeCCCCcc-cc-cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCC
Confidence            345555666666665554 22 2355556666666666655432  2455556666666666665544444455566666


Q ss_pred             EEecccccCCCCCCccccCCCCCCEEEccCCcCcccCCcccccCCcccEeecccccceecCC-cccCcccCceEeccccc
Q 046712          134 ILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVAYNQFSGMIP-PIYNISSLQYIFIHTNR  212 (566)
Q Consensus       134 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~l~~~~~L~~L~l~~~~  212 (566)
                      +|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+.+..+ .+..+++|++|++++|.
T Consensus       113 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~  192 (272)
T 3rfs_A          113 ELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQ  192 (272)
T ss_dssp             EEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             EEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCc
Confidence            66666666554444445556666666666666554444445556666666666665554444 23455666666666666


Q ss_pred             ccccCCCCCCCCCCCCcEEEcccccccccCcccccccCCCCeeecccccccccccccccCC
Q 046712          213 FHGSVPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINRNLFSGKVSINFSRL  273 (566)
Q Consensus       213 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~  273 (566)
                      +.+ ++...+..+++|+.|++++|.+.       ..++.|+.++++.|.+.+..+..+..+
T Consensus       193 l~~-~~~~~~~~l~~L~~L~l~~N~~~-------~~~~~l~~l~~~~n~~~g~ip~~~~~~  245 (272)
T 3rfs_A          193 LKS-VPDGVFDRLTSLQYIWLHDNPWD-------CTCPGIRYLSEWINKHSGVVRNSAGSV  245 (272)
T ss_dssp             CSC-CCTTTTTTCTTCCEEECCSSCBC-------CCTTTTHHHHHHHHHTGGGBBCTTSCB
T ss_pred             CCc-cCHHHHhCCcCCCEEEccCCCcc-------ccCcHHHHHHHHHHhCCCcccCccccc
Confidence            553 23233335666666666666543       224556666666666665555544433

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.87  E-value=3.9e-22  Score=190.73  Aligned_cols=231  Identities=18%  Similarity=0.191  Sum_probs=159.9

Q ss_pred             CCCCEEEccCCeeeeecchhHhh--hccCCcEEEccCCCCCCCcchhh--hccCCCCeecccCCccccccc----ccccC
Q 046712          304 TKLEVLDLHSNRFGGVLPFSLAN--LSTTMTEIAIGSNQISDTIPDVI--ANLVNLNALGVESNQLAGTIP----LAIGE  375 (566)
Q Consensus       304 ~~L~~L~l~~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~--~~l~~L~~L~l~~~~~~~~~~----~~~~~  375 (566)
                      ..++.+.+.++.+.......+..  ..+.|++|++++|.+.+..|..+  ..+++|++|++++|.+.+..+    ..+..
T Consensus        64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~  143 (310)
T 4glp_A           64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL  143 (310)
T ss_dssp             CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred             cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence            45777777777665322111111  12568888888888877777766  778888888888888875433    23446


Q ss_pred             CCCCCEEEccCCcccccCCccccCCCCCCeEeccCcccccc--C--CCCCcCCCCCcEEEccCCcceeccchhhhhhccc
Q 046712          376 LKSIQILFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGK--I--PPSNGNCQNLILLTTRKNKLSGIVPRQLLRIITL  451 (566)
Q Consensus       376 ~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~~--~--~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~  451 (566)
                      +++|++|++++|.+.+..+..+..+++|++|++++|++.+.  .  +..+..+++|++|++++|.+... +...      
T Consensus       144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l-~~~~------  216 (310)
T 4glp_A          144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETP-TGVC------  216 (310)
T ss_dssp             CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCH-HHHH------
T ss_pred             ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCch-HHHH------
Confidence            78888888888888766667788888888888888876532  1  23345677788887777776521 1100      


Q ss_pred             ceEEEccCCcccccCCcCccCCCCCCEEeCccccccccCCccccCC---CCCcEEeCCCCcccccCCcCCcCCCCCCEEe
Q 046712          452 SVLLDLSDNLLSGHFPTKVGNLKNLVSLDISSNMFSGEIPTTLGGC---TSLEYLGMQDNSFTISIPSTLSSLKSITELD  528 (566)
Q Consensus       452 l~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~l~~~~~~~~~~~---~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~  528 (566)
                                     ...+..+++|++|++++|.+.+..|..+..+   ++|++|++++|.++ .+|.++.  ++|++|+
T Consensus       217 ---------------~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~  278 (310)
T 4glp_A          217 ---------------AALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLD  278 (310)
T ss_dssp             ---------------HHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEE
T ss_pred             ---------------HHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEE
Confidence                           0013456778888888888876656666655   68888888888888 5676664  7888888


Q ss_pred             CCCCccccccCccccccccCceeecccCcCccc
Q 046712          529 LSRNNLSGHIPQYLENLSFLLFLNMSYNHFEGK  561 (566)
Q Consensus       529 l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~  561 (566)
                      +++|++++. |. +..+++|+.|++++|++++.
T Consensus       279 Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~~~  309 (310)
T 4glp_A          279 LSSNRLNRA-PQ-PDELPEVDNLTLDGNPFLVP  309 (310)
T ss_dssp             CCSCCCCSC-CC-TTSCCCCSCEECSSTTTSCC
T ss_pred             CCCCcCCCC-ch-hhhCCCccEEECcCCCCCCC
Confidence            888888843 33 57778888888888888753

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.87  E-value=3.4e-21  Score=178.21  Aligned_cols=189  Identities=20%  Similarity=0.225  Sum_probs=153.7

Q ss_pred             CCCcccccccCCCCCcEEEEEcCCCccccccCccCcCCCCCCEEecCCCcccccCCcccCCCCCCCEEeCCCCcCCCcCc
Q 046712           20 NLCQWTGVTCGHRRQRVTGLDLRHQSVGGVLSPFVGNLNFLRSINLPNNSFRGKIPHEVGNLFRLQNLTLTNNYFLGKIL   99 (566)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~l~l~~~~i~~~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~   99 (566)
                      .|+.|.|..|.   ...++++++++.++.. |..+.  +++++|++++|.+.+..+.+|.++++|++|++++|.+.+..+
T Consensus         3 ~Cp~~~gC~C~---~~~~~l~~~~~~l~~~-p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~   76 (251)
T 3m19_A            3 TCETVTGCTCN---EGKKEVDCQGKSLDSV-PSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSA   76 (251)
T ss_dssp             -CHHHHSSEEE---GGGTEEECTTCCCSSC-CSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCT
T ss_pred             cCCCCCceEcC---CCCeEEecCCCCcccc-CCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCH
Confidence            47799999995   4456899999988854 44444  689999999999997788889999999999999999998888


Q ss_pred             cccccCCCCcEEEcCCCcCCCCcchhccCCCCCCEEecccccCCCCCCccccCCCCCCEEEccCCcCcccCCcccccCCc
Q 046712          100 TDLSHCSNLMKFEASNNKLEGEIPVKISNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRN  179 (566)
Q Consensus       100 ~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~  179 (566)
                      ..|..+++|++|++++|.++...+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++
T Consensus        77 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~  156 (251)
T 3m19_A           77 GVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTN  156 (251)
T ss_dssp             TTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred             hHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcC
Confidence            88999999999999999999777777889999999999999998665666788999999999999988666667888888


Q ss_pred             ccEeecccccceecCC-cccCcccCceEeccccccc
Q 046712          180 LISFNVAYNQFSGMIP-PIYNISSLQYIFIHTNRFH  214 (566)
Q Consensus       180 L~~L~l~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~  214 (566)
                      |+.|++++|.+.+..+ .+..+++|+.|++++|.+.
T Consensus       157 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~  192 (251)
T 3m19_A          157 LQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFD  192 (251)
T ss_dssp             CCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC
T ss_pred             CCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCcee
Confidence            8888888888776555 4455566666666665554

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.87  E-value=2.1e-23  Score=206.31  Aligned_cols=194  Identities=18%  Similarity=0.248  Sum_probs=111.4

Q ss_pred             hhccCCCCeecccCCcccc----cccccccCCCCCCEEEccCCcccccCCcccc----CC---------CCCCeEeccCc
Q 046712          349 IANLVNLNALGVESNQLAG----TIPLAIGELKSIQILFLNENFLRGTIPSSLG----NL---------TLLTQLILEVN  411 (566)
Q Consensus       349 ~~~l~~L~~L~l~~~~~~~----~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~----~~---------~~L~~L~l~~~  411 (566)
                      +..+++|++|++++|.+.+    .++..+..+++|++|++++|.+++..+..+.    .+         ++|++|++++|
T Consensus        90 l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n  169 (386)
T 2ca6_A           90 LLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRN  169 (386)
T ss_dssp             HTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSS
T ss_pred             HhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCC
Confidence            3566777777777777665    2444566667777777777766533222222    22         55556665555


Q ss_pred             cccc-cCC---CCCcCCCCCcEEEccCCcceeccchhhhhhcccceEEEccCCcccccCCcCccCCCCCCEEeCcccccc
Q 046712          412 NLQG-KIP---PSNGNCQNLILLTTRKNKLSGIVPRQLLRIITLSVLLDLSDNLLSGHFPTKVGNLKNLVSLDISSNMFS  487 (566)
Q Consensus       412 ~l~~-~~~---~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~l~  487 (566)
                      .+.. ..+   ..+..+++|++|++++|.+.......                    ..+..+..+++|+.|++++|.++
T Consensus       170 ~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~--------------------l~~~~l~~~~~L~~L~Ls~n~l~  229 (386)
T 2ca6_A          170 RLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEH--------------------LLLEGLAYCQELKVLDLQDNTFT  229 (386)
T ss_dssp             CCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHH--------------------HHHTTGGGCTTCCEEECCSSCCH
T ss_pred             CCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHH--------------------HHHHHhhcCCCccEEECcCCCCC
Confidence            5541 111   12334444444444444443110000                    12224566677777777777764


Q ss_pred             ----ccCCccccCCCCCcEEeCCCCccccc----CCcCCc--CCCCCCEEeCCCCcccc----ccCccc-cccccCceee
Q 046712          488 ----GEIPTTLGGCTSLEYLGMQDNSFTIS----IPSTLS--SLKSITELDLSRNNLSG----HIPQYL-ENLSFLLFLN  552 (566)
Q Consensus       488 ----~~~~~~~~~~~~L~~L~L~~n~~~~~----~~~~l~--~l~~L~~L~l~~n~~~~----~~~~~l-~~l~~L~~L~  552 (566)
                          ..++..+..+++|++|+|++|.+++.    +++++.  .+++|++|+|++|.+..    .+|..+ .++++|+.|+
T Consensus       230 ~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~  309 (386)
T 2ca6_A          230 HLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLE  309 (386)
T ss_dssp             HHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEE
T ss_pred             cHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEE
Confidence                34555666777777777777776654    344553  26777777777777775    366655 5567777777


Q ss_pred             cccCcCcccC
Q 046712          553 MSYNHFEGKV  562 (566)
Q Consensus       553 l~~n~~~~~~  562 (566)
                      +++|++++..
T Consensus       310 l~~N~l~~~~  319 (386)
T 2ca6_A          310 LNGNRFSEED  319 (386)
T ss_dssp             CTTSBSCTTS
T ss_pred             ccCCcCCcch
Confidence            7777777654

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.86  E-value=1.3e-20  Score=177.62  Aligned_cols=204  Identities=21%  Similarity=0.205  Sum_probs=176.1

Q ss_pred             ccCCCCCCEEEccCCeeeeecchhHhhhccCCcEEEccCCCCCCCcchhhhccCCCCeecccCCcccccccccccCCCCC
Q 046712          300 LTNCTKLEVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQISDTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSI  379 (566)
Q Consensus       300 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L  379 (566)
                      +..+++++.++++++.++. +|..+   ++.++.|++++|.+++..+..+..+++|++|++++|.+++..+  ...+++|
T Consensus         6 ~~~l~~l~~l~~~~~~l~~-ip~~~---~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L   79 (290)
T 1p9a_G            6 VSKVASHLEVNCDKRNLTA-LPPDL---PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVL   79 (290)
T ss_dssp             EECSTTCCEEECTTSCCSS-CCSCC---CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTC
T ss_pred             ccccCCccEEECCCCCCCc-CCCCC---CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCcC
Confidence            5678899999999999884 34332   4789999999999998778889999999999999999986544  3788999


Q ss_pred             CEEEccCCcccccCCccccCCCCCCeEeccCccccccCCCCCcCCCCCcEEEccCCcceeccchhhhhhcccceEEEccC
Q 046712          380 QILFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSNGNCQNLILLTTRKNKLSGIVPRQLLRIITLSVLLDLSD  459 (566)
Q Consensus       380 ~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~  459 (566)
                      ++|++++|.+. .++..+..+++|++|++++|++.+..+..|..+++|++|++++|.+.+..+..+..+..+ +.|++++
T Consensus        80 ~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L-~~L~L~~  157 (290)
T 1p9a_G           80 GTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKL-EKLSLAN  157 (290)
T ss_dssp             CEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTC-CEEECTT
T ss_pred             CEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCC-CEEECCC
Confidence            99999999998 678888899999999999999997777889999999999999999986655555555555 9999999


Q ss_pred             CcccccCCcCccCCCCCCEEeCccccccccCCccccCCCCCcEEeCCCCcccc
Q 046712          460 NLLSGHFPTKVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTI  512 (566)
Q Consensus       460 ~~~~~~~~~~~~~~~~L~~L~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~~~~  512 (566)
                      |++.+..+..|..+++|+.|++++|.+. .+|..+...++|+.|+|++|++..
T Consensus       158 N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C  209 (290)
T 1p9a_G          158 NNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLC  209 (290)
T ss_dssp             SCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCC
T ss_pred             CcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccC
Confidence            9999777778889999999999999998 778888888999999999998764

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.86  E-value=3.7e-23  Score=200.82  Aligned_cols=266  Identities=17%  Similarity=0.244  Sum_probs=179.3

Q ss_pred             CCCCcccccccCCCCCcEEEEEcCCCccccccCccCcCC--CCCCEEecCCCcccccCCcccCCCCCCCEEeCCCCcCCC
Q 046712           19 INLCQWTGVTCGHRRQRVTGLDLRHQSVGGVLSPFVGNL--NFLRSINLPNNSFRGKIPHEVGNLFRLQNLTLTNNYFLG   96 (566)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~l~l~~~~i~~~~~~~~~~l--~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~l~~~~l~~   96 (566)
                      ..|..|.++.+..  ..+++++++++.+.   +..+..+  ++++.|++++|.+.+..+. +..+++|++|++++|.+..
T Consensus        34 ~vc~~W~~~~~~~--~~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~  107 (336)
T 2ast_B           34 GVCKRWYRLASDE--SLWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEV  107 (336)
T ss_dssp             SSCHHHHHHHTCS--TTSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECH
T ss_pred             HHHHHHHHHhcCc--hhheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCH
Confidence            4556899887652  46789999998876   3456666  8999999999999865554 6678999999999998765


Q ss_pred             c-CccccccCCCCcEEEcCCCcCCCCcchhccCCCCCCEEecccc-cCCC-CCCccccCCCCCCEEEccCC-cCccc-CC
Q 046712           97 K-ILTDLSHCSNLMKFEASNNKLEGEIPVKISNLLMLQILNIAEN-HLKG-QLPASIGNLSALQEIDVRGN-RLGGR-IP  171 (566)
Q Consensus        97 ~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~-~~~~-~~~~~~~~l~~L~~L~l~~~-~i~~~-~~  171 (566)
                      . .+..+..+++|++|++++|.+++..+..+.++++|++|++++| .+++ .++..+..+++|++|++++| .+++. ++
T Consensus       108 ~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~  187 (336)
T 2ast_B          108 STLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQ  187 (336)
T ss_dssp             HHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHH
T ss_pred             HHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHH
Confidence            5 6667888999999999999988777888888999999999998 5654 25666788899999999998 77643 45


Q ss_pred             cccccCC-cccEeeccccc--ce--ecCCcccCcccCceEecccccccccCCCCCCCCCCCCcEEEccccc-ccccCccc
Q 046712          172 STISHVR-NLISFNVAYNQ--FS--GMIPPIYNISSLQYIFIHTNRFHGSVPLDNGVNLPNLRYFSISGNN-LTGSLQDS  245 (566)
Q Consensus       172 ~~l~~l~-~L~~L~l~~~~--~~--~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~  245 (566)
                      ..+..++ +|++|++++|.  +.  .....+..                         +++|++|++++|. +++.....
T Consensus       188 ~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~-------------------------~~~L~~L~l~~~~~l~~~~~~~  242 (336)
T 2ast_B          188 VAVAHVSETITQLNLSGYRKNLQKSDLSTLVRR-------------------------CPNLVHLDLSDSVMLKNDCFQE  242 (336)
T ss_dssp             HHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHH-------------------------CTTCSEEECTTCTTCCGGGGGG
T ss_pred             HHHHhcccCCCEEEeCCCcccCCHHHHHHHHhh-------------------------CCCCCEEeCCCCCcCCHHHHHH
Confidence            6677788 88888888874  22  11112223                         4455555555554 44344445


Q ss_pred             ccccCCCCeeeccccc-ccccccccccCCCCCcEEECCCCccCCcCCCChhhhhhccCCCCCCEEEccCCeeeeecchhH
Q 046712          246 LSNATNLQGLEINRNL-FSGKVSINFSRLQNLSRLNLGENNLGTGTTNDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSL  324 (566)
Q Consensus       246 l~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~  324 (566)
                      +..+++|+.|++++|. +.......+..+++|+.|++++| +.   ...+.   .+.  ..++.|++++|.+++..|..+
T Consensus       243 l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~---~~~~~---~l~--~~l~~L~l~~n~l~~~~~~~~  313 (336)
T 2ast_B          243 FFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VP---DGTLQ---LLK--EALPHLQINCSHFTTIARPTI  313 (336)
T ss_dssp             GGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SC---TTCHH---HHH--HHSTTSEESCCCSCCTTCSSC
T ss_pred             HhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cC---HHHHH---HHH--hhCcceEEecccCccccCCcc
Confidence            5566666666666663 22222223556666777777666 22   11111   111  124444466777766655443

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.86  E-value=3.7e-21  Score=176.62  Aligned_cols=196  Identities=15%  Similarity=0.201  Sum_probs=133.6

Q ss_pred             CCCEEecCCCcccccCCcccCCCCCCCEEeCCCCc-CCCcCccccccCCCCcEEEcCC-CcCCCCcchhccCCCCCCEEe
Q 046712           59 FLRSINLPNNSFRGKIPHEVGNLFRLQNLTLTNNY-FLGKILTDLSHCSNLMKFEASN-NKLEGEIPVKISNLLMLQILN  136 (566)
Q Consensus        59 ~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~l~~~~-l~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~l~~l~~L~~L~  136 (566)
                      +|++|++++|.+++..+.+|.++++|++|++++|. ++...+..|.++++|++|++++ |.++...+..+..+++|++|+
T Consensus        32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~  111 (239)
T 2xwt_C           32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG  111 (239)
T ss_dssp             TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred             cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence            67777777777775555567777777777777775 6655566677777777777776 777655555667777777777


Q ss_pred             cccccCCCCCCccccCCCCCC---EEEccCC-cCcccCCcccccCCccc-EeecccccceecCCcccCcccCceEecccc
Q 046712          137 IAENHLKGQLPASIGNLSALQ---EIDVRGN-RLGGRIPSTISHVRNLI-SFNVAYNQFSGMIPPIYNISSLQYIFIHTN  211 (566)
Q Consensus       137 l~~~~~~~~~~~~~~~l~~L~---~L~l~~~-~i~~~~~~~l~~l~~L~-~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~  211 (566)
                      +++|.+.+ +|. +..+++|+   +|++++| .++...+..|..+++|+ .|++++|.+.......+..++|++|++++|
T Consensus       112 l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~~~L~~L~L~~n  189 (239)
T 2xwt_C          112 IFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKN  189 (239)
T ss_dssp             EEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTTCEEEEEECTTC
T ss_pred             CCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCCCCCCEEEcCCC
Confidence            77777763 555 66777777   7777777 77655555677777777 777777777765554444467777777777


Q ss_pred             c-ccccCCCCCCCCC-CCCcEEEcccccccccCcccccccCCCCeeecccc
Q 046712          212 R-FHGSVPLDNGVNL-PNLRYFSISGNNLTGSLQDSLSNATNLQGLEINRN  260 (566)
Q Consensus       212 ~-~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~  260 (566)
                      . +. .++...+..+ ++|+.|++++|.++.....   .+++|+.|++.++
T Consensus       190 ~~l~-~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~---~~~~L~~L~l~~~  236 (239)
T 2xwt_C          190 KYLT-VIDKDAFGGVYSGPSLLDVSQTSVTALPSK---GLEHLKELIARNT  236 (239)
T ss_dssp             TTCC-EECTTTTTTCSBCCSEEECTTCCCCCCCCT---TCTTCSEEECTTC
T ss_pred             CCcc-cCCHHHhhccccCCcEEECCCCccccCChh---HhccCceeeccCc
Confidence            4 65 4444444466 7788888888777643332   4567777777654

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.86  E-value=1.5e-20  Score=173.74  Aligned_cols=181  Identities=19%  Similarity=0.179  Sum_probs=131.1

Q ss_pred             CCCCeecccCCcccccccccccCCCCCCEEEccCCcccccCCccccCCCCCCeEeccCccccccCCCCCcCCCCCcEEEc
Q 046712          353 VNLNALGVESNQLAGTIPLAIGELKSIQILFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSNGNCQNLILLTT  432 (566)
Q Consensus       353 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l  432 (566)
                      +..++++++++.++ .+|..+.  ++++.|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++
T Consensus        14 ~~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L   90 (251)
T 3m19_A           14 EGKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL   90 (251)
T ss_dssp             GGGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEEC
Confidence            45778888888887 4454444  58899999999988777778888899999999999988777777888888888888


Q ss_pred             cCCcceeccchhhhhhcccceEEEccCCcccccCCcCccCCCCCCEEeCccccccccCCccccCCCCCcEEeCCCCcccc
Q 046712          433 RKNKLSGIVPRQLLRIITLSVLLDLSDNLLSGHFPTKVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTI  512 (566)
Q Consensus       433 ~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~~~~  512 (566)
                      ++|.+.+..+..+..+..+ +.|++++|.+.+..+..|..+++|++|++++|.+.+..+..|..+++|++|+|++|.++.
T Consensus        91 ~~n~l~~~~~~~~~~l~~L-~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~  169 (251)
T 3m19_A           91 ANNQLASLPLGVFDHLTQL-DKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQS  169 (251)
T ss_dssp             TTSCCCCCCTTTTTTCTTC-CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred             CCCcccccChhHhcccCCC-CEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCc
Confidence            8888875544444444433 777777777765555556667777777777777764444456667777777777777765


Q ss_pred             cCCcCCcCCCCCCEEeCCCCccccc
Q 046712          513 SIPSTLSSLKSITELDLSRNNLSGH  537 (566)
Q Consensus       513 ~~~~~l~~l~~L~~L~l~~n~~~~~  537 (566)
                      ..++.+..+++|+.|++++|++...
T Consensus       170 ~~~~~~~~l~~L~~L~l~~N~~~c~  194 (251)
T 3m19_A          170 VPHGAFDRLGKLQTITLFGNQFDCS  194 (251)
T ss_dssp             CCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred             cCHHHHhCCCCCCEEEeeCCceeCC
Confidence            5555666677777777777776643

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.85  E-value=3.3e-21  Score=177.00  Aligned_cols=200  Identities=17%  Similarity=0.190  Sum_probs=129.9

Q ss_pred             cCCcEEEccCCCCCCCcchhhhccCCCCeecccCCc-ccccccccccCCCCCCEEEccC-CcccccCCccccCCCCCCeE
Q 046712          329 TTMTEIAIGSNQISDTIPDVIANLVNLNALGVESNQ-LAGTIPLAIGELKSIQILFLNE-NFLRGTIPSSLGNLTLLTQL  406 (566)
Q Consensus       329 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~-n~~~~~~~~~~~~~~~L~~L  406 (566)
                      +.+++|++++|.+++..+..+..+++|++|++++|. +++..+..|.++++|++|++++ |.++...+..|..+++|++|
T Consensus        31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L  110 (239)
T 2xwt_C           31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL  110 (239)
T ss_dssp             TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred             CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence            466666666666665444456666666666666664 5544444566666666666665 66654444555666666666


Q ss_pred             eccCccccccCCCCCcCCCCCcEEEccCCcceeccchhhhhhcccceEEEccCC-cccccCCcCccCCCCCC-EEeCccc
Q 046712          407 ILEVNNLQGKIPPSNGNCQNLILLTTRKNKLSGIVPRQLLRIITLSVLLDLSDN-LLSGHFPTKVGNLKNLV-SLDISSN  484 (566)
Q Consensus       407 ~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~-~~~~~~~~~~~~~~~L~-~L~ls~~  484 (566)
                      ++++|++.+ +|. +..+++|+.                      ++.|++++| .+.+..+..|..+++|+ +|++++|
T Consensus       111 ~l~~n~l~~-lp~-~~~l~~L~~----------------------L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n  166 (239)
T 2xwt_C          111 GIFNTGLKM-FPD-LTKVYSTDI----------------------FFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNN  166 (239)
T ss_dssp             EEEEECCCS-CCC-CTTCCBCCS----------------------EEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSC
T ss_pred             eCCCCCCcc-ccc-ccccccccc----------------------ccEEECCCCcchhhcCcccccchhcceeEEEcCCC
Confidence            666666553 333 444444440                      025556665 55555556677888888 8888888


Q ss_pred             cccccCCccccCCCCCcEEeCCCCc-ccccCCcCCcCC-CCCCEEeCCCCccccccCccccccccCceeecccC
Q 046712          485 MFSGEIPTTLGGCTSLEYLGMQDNS-FTISIPSTLSSL-KSITELDLSRNNLSGHIPQYLENLSFLLFLNMSYN  556 (566)
Q Consensus       485 ~l~~~~~~~~~~~~~L~~L~L~~n~-~~~~~~~~l~~l-~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n  556 (566)
                      ++....+..+.. ++|++|++++|+ ++...++.|..+ ++|+.|++++|+++...+.   .+++|+.|+++++
T Consensus       167 ~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~---~~~~L~~L~l~~~  236 (239)
T 2xwt_C          167 GFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK---GLEHLKELIARNT  236 (239)
T ss_dssp             CCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT---TCTTCSEEECTTC
T ss_pred             CCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh---HhccCceeeccCc
Confidence            888433344554 788999999885 886667778888 8899999999888844333   5667888888876

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.85  E-value=5e-22  Score=194.38  Aligned_cols=260  Identities=18%  Similarity=0.185  Sum_probs=135.6

Q ss_pred             EEcccccccccCcccccccCCCCeeeccccccccccc----ccccCCC-CCcEEECCCCccCCcCCCChhhhhhccCC-C
Q 046712          231 FSISGNNLTGSLQDSLSNATNLQGLEINRNLFSGKVS----INFSRLQ-NLSRLNLGENNLGTGTTNDLDFITLLTNC-T  304 (566)
Q Consensus       231 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~----~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~l~~~-~  304 (566)
                      +.++.+.+++..+..+...++|++|++++|.+.....    ..+..++ +|++|++++|.+.......+  ...+... +
T Consensus         3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l--~~~l~~~~~   80 (362)
T 3goz_A            3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDEL--VQILAAIPA   80 (362)
T ss_dssp             EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHH--HHHHHTSCT
T ss_pred             cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHH--HHHHhccCC
Confidence            3445555554444434444445666665555554433    3344444 55555555555443322111  1112222 4


Q ss_pred             CCCEEEccCCeeeeecchhHhhhccCCcEEEccCCCCCCCcchhhhcc-CCCCeecccCCcccccccccc----cC-CCC
Q 046712          305 KLEVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQISDTIPDVIANL-VNLNALGVESNQLAGTIPLAI----GE-LKS  378 (566)
Q Consensus       305 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l-~~L~~L~l~~~~~~~~~~~~~----~~-~~~  378 (566)
                      +|+.|++++|.+.+..+..+..                     .+..+ ++|++|++++|.+++..+..+    .. .++
T Consensus        81 ~L~~L~Ls~n~l~~~~~~~l~~---------------------~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~  139 (362)
T 3goz_A           81 NVTSLNLSGNFLSYKSSDELVK---------------------TLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPAS  139 (362)
T ss_dssp             TCCEEECCSSCGGGSCHHHHHH---------------------HHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTT
T ss_pred             CccEEECcCCcCChHHHHHHHH---------------------HHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCc
Confidence            5555555555544333332222                     12222 556666666665554433222    22 245


Q ss_pred             CCEEEccCCcccccCC----ccccCCC-CCCeEeccCccccccCCCC----CcCC-CCCcEEEccCCcceec----cchh
Q 046712          379 IQILFLNENFLRGTIP----SSLGNLT-LLTQLILEVNNLQGKIPPS----NGNC-QNLILLTTRKNKLSGI----VPRQ  444 (566)
Q Consensus       379 L~~L~l~~n~~~~~~~----~~~~~~~-~L~~L~l~~~~l~~~~~~~----~~~~-~~L~~L~l~~~~~~~~----~~~~  444 (566)
                      |++|++++|.+++...    ..+..++ +|++|++++|++.+..+..    +..+ ++|++|++++|.+.+.    ++..
T Consensus       140 L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~  219 (362)
T 3goz_A          140 ITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYI  219 (362)
T ss_dssp             CCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred             eeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHH
Confidence            6666666666553222    2223333 6666666666655433322    2233 3666666666666542    3334


Q ss_pred             hhhhcccceEEEccCCcccccCC----cCccCCCCCCEEeCcccccccc-------CCccccCCCCCcEEeCCCCccccc
Q 046712          445 LLRIITLSVLLDLSDNLLSGHFP----TKVGNLKNLVSLDISSNMFSGE-------IPTTLGGCTSLEYLGMQDNSFTIS  513 (566)
Q Consensus       445 ~~~~~~~l~~L~l~~~~~~~~~~----~~~~~~~~L~~L~ls~~~l~~~-------~~~~~~~~~~L~~L~L~~n~~~~~  513 (566)
                      +....+.++.|++++|.+.+..+    ..+..+++|+.|++++|.+...       ++..+..+++|++|++++|.+...
T Consensus       220 l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~  299 (362)
T 3goz_A          220 FSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS  299 (362)
T ss_dssp             HHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred             HhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence            44444455777777777765433    3456778899999999984422       334577788899999999988755

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.85  E-value=9.5e-21  Score=180.54  Aligned_cols=191  Identities=22%  Similarity=0.311  Sum_probs=148.2

Q ss_pred             cCCcEEEccCCCCCCCcchhhhccCCCCeecccCCcccccccccccCCCCCCEEEccCCcccccCCccccCCCCCCeEec
Q 046712          329 TTMTEIAIGSNQISDTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSIQILFLNENFLRGTIPSSLGNLTLLTQLIL  408 (566)
Q Consensus       329 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l  408 (566)
                      +.|++|++.+|.+.. ++ .+..+++|++|++++|.+.+..+  +..+++|++|++++|.+.+.  ..+..+++|++|++
T Consensus        41 ~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~l  114 (308)
T 1h6u_A           41 DGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIKTLDL  114 (308)
T ss_dssp             HTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCEEEC
T ss_pred             CCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCCCEEEC
Confidence            789999999998875 34 57888999999999998886544  88889999999999998743  36888899999999


Q ss_pred             cCccccccCCCCCcCCCCCcEEEccCCcceeccchhhhhhcccceEEEccCCcccccCCcCccCCCCCCEEeCccccccc
Q 046712          409 EVNNLQGKIPPSNGNCQNLILLTTRKNKLSGIVPRQLLRIITLSVLLDLSDNLLSGHFPTKVGNLKNLVSLDISSNMFSG  488 (566)
Q Consensus       409 ~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~l~~  488 (566)
                      ++|.+.+. + .+..+++|++|++++|.+.+..+  +..+..+ +.|++++|.+.+..+  +..+++|+.|++++|.+.+
T Consensus       115 ~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L-~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~  187 (308)
T 1h6u_A          115 TSTQITDV-T-PLAGLSNLQVLYLDLNQITNISP--LAGLTNL-QYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISD  187 (308)
T ss_dssp             TTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTC-CEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC
T ss_pred             CCCCCCCc-h-hhcCCCCCCEEECCCCccCcCcc--ccCCCCc-cEEEccCCcCCCChh--hcCCCCCCEEECCCCccCc
Confidence            99988753 3 37888999999999998875433  4444444 888888888875433  7788888888888888874


Q ss_pred             cCCccccCCCCCcEEeCCCCcccccCCcCCcCCCCCCEEeCCCCcccc
Q 046712          489 EIPTTLGGCTSLEYLGMQDNSFTISIPSTLSSLKSITELDLSRNNLSG  536 (566)
Q Consensus       489 ~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~  536 (566)
                      ..+  +..+++|++|++++|.+.+..  .+..+++|+.|++++|+++.
T Consensus       188 ~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~  231 (308)
T 1h6u_A          188 ISP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITN  231 (308)
T ss_dssp             CGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEEC
T ss_pred             Chh--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeeec
Confidence            332  777888888888888887543  37778888888888888874

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.84  E-value=1.2e-20  Score=180.44  Aligned_cols=229  Identities=14%  Similarity=0.132  Sum_probs=165.5

Q ss_pred             CCCcEEECCCCccCCcCCCChhhhhhccCCCCCCEEEccCCeeeeecchhHh-hhccCCcEEEccCCCCCCCcc----hh
Q 046712          274 QNLSRLNLGENNLGTGTTNDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLA-NLSTTMTEIAIGSNQISDTIP----DV  348 (566)
Q Consensus       274 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~----~~  348 (566)
                      ..++.+.+..+.+.....   ........+++|++|++++|.+.+..+..+. ...+.|++|++++|.+.+..+    ..
T Consensus        64 ~~l~~l~l~~~~~~~~~~---~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~  140 (310)
T 4glp_A           64 LRVRRLTVGAAQVPAQLL---VGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQ  140 (310)
T ss_dssp             CCCCEEEECSCCCBHHHH---HHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHH
T ss_pred             cceeEEEEeCCcCCHHHH---HHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHH
Confidence            345666666655432111   1111223446799999999999988877663 345899999999999987544    33


Q ss_pred             hhccCCCCeecccCCcccccccccccCCCCCCEEEccCCccccc--C--CccccCCCCCCeEeccCccccccCCC----C
Q 046712          349 IANLVNLNALGVESNQLAGTIPLAIGELKSIQILFLNENFLRGT--I--PSSLGNLTLLTQLILEVNNLQGKIPP----S  420 (566)
Q Consensus       349 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~--~--~~~~~~~~~L~~L~l~~~~l~~~~~~----~  420 (566)
                      +..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+.  .  +..+..+++|++|++++|++.. ++.    .
T Consensus       141 ~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l  219 (310)
T 4glp_A          141 QWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAAL  219 (310)
T ss_dssp             TTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHH
T ss_pred             hhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHH
Confidence            45789999999999999988888999999999999999997532  1  2334678999999999999862 121    1


Q ss_pred             CcCCCCCcEEEccCCcceeccchhhhhhcccceEEEccCCcccccCCcCccCC---CCCCEEeCccccccccCCccccCC
Q 046712          421 NGNCQNLILLTTRKNKLSGIVPRQLLRIITLSVLLDLSDNLLSGHFPTKVGNL---KNLVSLDISSNMFSGEIPTTLGGC  497 (566)
Q Consensus       421 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~---~~L~~L~ls~~~l~~~~~~~~~~~  497 (566)
                      +..+++|++|++++|.+.+.                         .|..+..+   ++|++|++++|+++ .+|..+.  
T Consensus       220 ~~~l~~L~~L~Ls~N~l~~~-------------------------~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--  271 (310)
T 4glp_A          220 AAAGVQPHSLDLSHNSLRAT-------------------------VNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--  271 (310)
T ss_dssp             HHHTCCCSSEECTTSCCCCC-------------------------CCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--
T ss_pred             HhcCCCCCEEECCCCCCCcc-------------------------chhhHHhccCcCcCCEEECCCCCCC-chhhhhc--
Confidence            34556666666666665543                         33333333   68899999999888 6676664  


Q ss_pred             CCCcEEeCCCCcccccCCcCCcCCCCCCEEeCCCCcccc
Q 046712          498 TSLEYLGMQDNSFTISIPSTLSSLKSITELDLSRNNLSG  536 (566)
Q Consensus       498 ~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~  536 (566)
                      ++|++|++++|.+++ +|. +..+++|+.|++++|++++
T Consensus       272 ~~L~~L~Ls~N~l~~-~~~-~~~l~~L~~L~L~~N~l~~  308 (310)
T 4glp_A          272 AKLRVLDLSSNRLNR-APQ-PDELPEVDNLTLDGNPFLV  308 (310)
T ss_dssp             SCCSCEECCSCCCCS-CCC-TTSCCCCSCEECSSTTTSC
T ss_pred             CCCCEEECCCCcCCC-Cch-hhhCCCccEEECcCCCCCC
Confidence            789999999998884 333 6778899999999998863

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.83  E-value=9.4e-20  Score=173.66  Aligned_cols=194  Identities=23%  Similarity=0.355  Sum_probs=154.5

Q ss_pred             cCCCCCCEEEccCCeeeeecchhHhhhccCCcEEEccCCCCCCCcchhhhccCCCCeecccCCcccccccccccCCCCCC
Q 046712          301 TNCTKLEVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQISDTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSIQ  380 (566)
Q Consensus       301 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~  380 (566)
                      ..+++|+.|+++++.+... + .+.. .+.|++|++++|.+.+..+  +..+++|++|++++|.+.+.  ..+..+++|+
T Consensus        38 ~~l~~L~~L~l~~~~i~~l-~-~~~~-l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~  110 (308)
T 1h6u_A           38 ADLDGITTLSAFGTGVTTI-E-GVQY-LNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIK  110 (308)
T ss_dssp             HHHHTCCEEECTTSCCCCC-T-TGGG-CTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCC
T ss_pred             HHcCCcCEEEeeCCCccCc-h-hhhc-cCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCCC
Confidence            3567899999999988753 3 3333 4899999999999886544  88899999999999998854  3588899999


Q ss_pred             EEEccCCcccccCCccccCCCCCCeEeccCccccccCCCCCcCCCCCcEEEccCCcceeccchhhhhhcccceEEEccCC
Q 046712          381 ILFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSNGNCQNLILLTTRKNKLSGIVPRQLLRIITLSVLLDLSDN  460 (566)
Q Consensus       381 ~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~  460 (566)
                      +|++++|.+++. + .+..+++|++|++++|.+.+..+  +..+++|+.|++++|.+.+..+  +..+..+ +.|++++|
T Consensus       111 ~L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L-~~L~l~~n  183 (308)
T 1h6u_A          111 TLDLTSTQITDV-T-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKL-TTLKADDN  183 (308)
T ss_dssp             EEECTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTC-CEEECCSS
T ss_pred             EEECCCCCCCCc-h-hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCC-CEEECCCC
Confidence            999999998743 3 48889999999999999875433  7888999999999998875433  4555444 89999999


Q ss_pred             cccccCCcCccCCCCCCEEeCccccccccCCccccCCCCCcEEeCCCCcccc
Q 046712          461 LLSGHFPTKVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTI  512 (566)
Q Consensus       461 ~~~~~~~~~~~~~~~L~~L~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~~~~  512 (566)
                      .+.+..+  +..+++|++|++++|.+.+..  .+..+++|++|++++|.++.
T Consensus       184 ~l~~~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~  231 (308)
T 1h6u_A          184 KISDISP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITN  231 (308)
T ss_dssp             CCCCCGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEEC
T ss_pred             ccCcChh--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeeec
Confidence            9875543  788899999999999998544  37889999999999998874

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.82  E-value=1.2e-21  Score=193.65  Aligned_cols=251  Identities=21%  Similarity=0.217  Sum_probs=148.9

Q ss_pred             cCccCcCCCCCCEEecCCCcccccC----CcccCCCCCCCEEeCCCCcCC---CcCcccc-------ccCCCCcEEEcCC
Q 046712           50 LSPFVGNLNFLRSINLPNNSFRGKI----PHEVGNLFRLQNLTLTNNYFL---GKILTDL-------SHCSNLMKFEASN  115 (566)
Q Consensus        50 ~~~~~~~l~~L~~L~ls~~~l~~~~----~~~~~~l~~L~~L~l~~~~l~---~~~~~~~-------~~l~~L~~L~l~~  115 (566)
                      ++..+..+++|++|++++|.+++..    +.++..+++|++|++++|.+.   +..|..+       ..+++|++|++++
T Consensus        24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~  103 (386)
T 2ca6_A           24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD  103 (386)
T ss_dssp             TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred             HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCC
Confidence            4455677788888888888777543    334667788888888776432   2233333       5677777777777


Q ss_pred             CcCCC----CcchhccCCCCCCEEecccccCCCCCCcc----ccCC---------CCCCEEEccCCcCcc-cCC---ccc
Q 046712          116 NKLEG----EIPVKISNLLMLQILNIAENHLKGQLPAS----IGNL---------SALQEIDVRGNRLGG-RIP---STI  174 (566)
Q Consensus       116 ~~~~~----~~~~~l~~l~~L~~L~l~~~~~~~~~~~~----~~~l---------~~L~~L~l~~~~i~~-~~~---~~l  174 (566)
                      |.+..    .++..+..+++|++|++++|.+.+..+..    +..+         ++|++|++++|.++. .++   ..+
T Consensus       104 n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l  183 (386)
T 2ca6_A          104 NAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTF  183 (386)
T ss_dssp             CCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHH
T ss_pred             CcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHH
Confidence            77765    25556667777777777777765322222    2223         677777777776652 222   244


Q ss_pred             ccCCcccEeecccccceecCCcccCcccCceEecccccccccCCCCCCCCCCCCcEEEccccccc----ccCcccccccC
Q 046712          175 SHVRNLISFNVAYNQFSGMIPPIYNISSLQYIFIHTNRFHGSVPLDNGVNLPNLRYFSISGNNLT----GSLQDSLSNAT  250 (566)
Q Consensus       175 ~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~----~~~~~~l~~~~  250 (566)
                      ..+++|+.|++++|.+.....                  ....+... ..+++|++|++++|.++    ...+..+..++
T Consensus       184 ~~~~~L~~L~L~~n~l~~~g~------------------~~l~~~~l-~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~  244 (386)
T 2ca6_A          184 QSHRLLHTVKMVQNGIRPEGI------------------EHLLLEGL-AYCQELKVLDLQDNTFTHLGSSALAIALKSWP  244 (386)
T ss_dssp             HHCTTCCEEECCSSCCCHHHH------------------HHHHHTTG-GGCTTCCEEECCSSCCHHHHHHHHHHHGGGCT
T ss_pred             HhCCCcCEEECcCCCCCHhHH------------------HHHHHHHh-hcCCCccEEECcCCCCCcHHHHHHHHHHccCC
Confidence            456666666666665541100                  00001011 14566777777777664    33455666777


Q ss_pred             CCCeeeccccccccc----cccccc--CCCCCcEEECCCCccCCcCCCChhhhhhc-cCCCCCCEEEccCCeeeeecc
Q 046712          251 NLQGLEINRNLFSGK----VSINFS--RLQNLSRLNLGENNLGTGTTNDLDFITLL-TNCTKLEVLDLHSNRFGGVLP  321 (566)
Q Consensus       251 ~L~~L~l~~~~~~~~----~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~l-~~~~~L~~L~l~~~~~~~~~~  321 (566)
                      +|+.|++++|.++..    .+..+.  .+++|++|++++|.+......  .+...+ .++++|+.|++++|.+.+..+
T Consensus       245 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~--~l~~~l~~~l~~L~~L~l~~N~l~~~~~  320 (386)
T 2ca6_A          245 NLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVR--TLKTVIDEKMPDLLFLELNGNRFSEEDD  320 (386)
T ss_dssp             TCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHH--HHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred             CcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHH--HHHHHHHhcCCCceEEEccCCcCCcchh
Confidence            788888877777654    223342  377888888888877652110  111233 457888888888888876553

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.82  E-value=2.6e-19  Score=160.48  Aligned_cols=180  Identities=18%  Similarity=0.195  Sum_probs=139.7

Q ss_pred             CcccccccCCCCCcEEEEEcCCCccccccCccCcCCCCCCEEecCCCcccccCCcccCCCCCCCEEeCCCCcCCCcCccc
Q 046712           22 CQWTGVTCGHRRQRVTGLDLRHQSVGGVLSPFVGNLNFLRSINLPNNSFRGKIPHEVGNLFRLQNLTLTNNYFLGKILTD  101 (566)
Q Consensus        22 ~~~~~~~~~~~~~~~~~l~l~~~~i~~~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~  101 (566)
                      |.|.++.|...            .++.. |..  ..++|++|++++|.+++..+..|.++++|++|++++|.++...+..
T Consensus         7 C~~~~v~c~~~------------~l~~~-p~~--~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~   71 (208)
T 2o6s_A            7 CSGTTVECYSQ------------GRTSV-PTG--IPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGV   71 (208)
T ss_dssp             EETTEEECCSS------------CCSSC-CSC--CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTT
T ss_pred             ECCCEEEecCC------------CccCC-CCC--CCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhh
Confidence            78988888643            33322 222  2468899999999888666667888999999999999888777777


Q ss_pred             cccCCCCcEEEcCCCcCCCCcchhccCCCCCCEEecccccCCCCCCccccCCCCCCEEEccCCcCcccCCcccccCCccc
Q 046712          102 LSHCSNLMKFEASNNKLEGEIPVKISNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLI  181 (566)
Q Consensus       102 ~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~  181 (566)
                      |..+++|++|++++|.++...+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|+
T Consensus        72 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~  151 (208)
T 2o6s_A           72 FNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQ  151 (208)
T ss_dssp             TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCC
T ss_pred             cCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCcc
Confidence            88889999999999988866666678889999999999988866666678889999999999988866566678888899


Q ss_pred             EeecccccceecCCcccCcccCceEecccccccccCCCCCC
Q 046712          182 SFNVAYNQFSGMIPPIYNISSLQYIFIHTNRFHGSVPLDNG  222 (566)
Q Consensus       182 ~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~  222 (566)
                      .|++++|.+.      ..++.++.|.++.+.+++.+|....
T Consensus       152 ~L~l~~N~~~------~~~~~l~~L~~~~n~~~g~ip~~~~  186 (208)
T 2o6s_A          152 YIWLHDNPWD------CTCPGIRYLSEWINKHSGVVRNSAG  186 (208)
T ss_dssp             EEECCSCCBC------CCTTTTHHHHHHHHHCTTTBBCTTS
T ss_pred             EEEecCCCee------cCCCCHHHHHHHHHhCCceeeccCc
Confidence            9988888654      3456777777777877777775544

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.81  E-value=5.3e-19  Score=171.94  Aligned_cols=220  Identities=16%  Similarity=0.185  Sum_probs=92.7

Q ss_pred             CCcEEEccCCCCCCCcchhhhccCCCCeecccCCcccccc-cccccCCCCCCE-EEccCCcccccCCccccCCCCCCeEe
Q 046712          330 TMTEIAIGSNQISDTIPDVIANLVNLNALGVESNQLAGTI-PLAIGELKSIQI-LFLNENFLRGTIPSSLGNLTLLTQLI  407 (566)
Q Consensus       330 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~-L~l~~n~~~~~~~~~~~~~~~L~~L~  407 (566)
                      ++++|++++|.++...+..|.++++|++|++++|++.+.. +.+|.+++++++ +.+.+|.++...+..|..+++|++|+
T Consensus        31 ~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~  110 (350)
T 4ay9_X           31 NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLL  110 (350)
T ss_dssp             TCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEE
T ss_pred             CCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhcccccccc
Confidence            4444444444444322334444555555555555443222 223444444443 23333444433344445555555555


Q ss_pred             ccCccccccCCCCCcCCCCCcEEEccC-CcceeccchhhhhhcccceEEEccCCcccccCCcCccCCCCCCEEeCcc-cc
Q 046712          408 LEVNNLQGKIPPSNGNCQNLILLTTRK-NKLSGIVPRQLLRIITLSVLLDLSDNLLSGHFPTKVGNLKNLVSLDISS-NM  485 (566)
Q Consensus       408 l~~~~l~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~-~~  485 (566)
                      +++|++....+..+.....+..+++.+ +.+....+..+......++.|++++|.+.+..+..| ...+|++|++++ |.
T Consensus       111 l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f-~~~~L~~l~l~~~n~  189 (350)
T 4ay9_X          111 ISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAF-NGTQLDELNLSDNNN  189 (350)
T ss_dssp             EEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSS-TTEEEEEEECTTCTT
T ss_pred             ccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhc-cccchhHHhhccCCc
Confidence            555554433333333444444444433 233322223333333333455555555543333332 233455555543 33


Q ss_pred             ccccCCccccCCCCCcEEeCCCCcccccCCcCCcCCCCCCEEeCCCCccccccCccccccccCceeecc
Q 046712          486 FSGEIPTTLGGCTSLEYLGMQDNSFTISIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLLFLNMS  554 (566)
Q Consensus       486 l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~  554 (566)
                      +....+..|.++++|++|++++|.++. +|..  .+.+|+.|.+.++...+.+|. +.++++|+.+++.
T Consensus       190 l~~i~~~~f~~l~~L~~LdLs~N~l~~-lp~~--~~~~L~~L~~l~~~~l~~lP~-l~~l~~L~~l~l~  254 (350)
T 4ay9_X          190 LEELPNDVFHGASGPVILDISRTRIHS-LPSY--GLENLKKLRARSTYNLKKLPT-LEKLVALMEASLT  254 (350)
T ss_dssp             CCCCCTTTTTTEECCSEEECTTSCCCC-CCSS--SCTTCCEEECTTCTTCCCCCC-TTTCCSCCEEECS
T ss_pred             ccCCCHHHhccCcccchhhcCCCCcCc-cChh--hhccchHhhhccCCCcCcCCC-chhCcChhhCcCC
Confidence            332222334555555555555555542 2221  123334444433333333332 4445555555543

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.80  E-value=5.9e-19  Score=160.32  Aligned_cols=170  Identities=18%  Similarity=0.180  Sum_probs=125.0

Q ss_pred             CCCCCCCCCcCCCCCCcccccccCCCCCcEEEEEcCCCccccccCccCcCCCCCCEEecCCCcccccCCcccCCCCCCCE
Q 046712            7 DPLGVTSSWNNSINLCQWTGVTCGHRRQRVTGLDLRHQSVGGVLSPFVGNLNFLRSINLPNNSFRGKIPHEVGNLFRLQN   86 (566)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~i~~~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~~~l~~L~~   86 (566)
                      ..+.....|..+...|.|.+++|...            .++ .+|..+.  ++|++|++++|.+++..|.+|.++++|++
T Consensus         4 ~~~~~~~~~~~~~~~Cs~~~v~c~~~------------~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~   68 (229)
T 3e6j_A            4 HHHHHHSAACPSQCSCSGTTVDCRSK------------RHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKE   68 (229)
T ss_dssp             -------CCCCTTCEEETTEEECTTS------------CCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             cccchhhccCCCCCEEeCCEeEccCC------------CcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcE
Confidence            34455677888888999999999643            233 2232222  77888888888888666777888888888


Q ss_pred             EeCCCCcCCCcCccccccCCCCcEEEcCCCcCCCCcchhccCCCCCCEEecccccCCCCCCccccCCCCCCEEEccCCcC
Q 046712           87 LTLTNNYFLGKILTDLSHCSNLMKFEASNNKLEGEIPVKISNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRL  166 (566)
Q Consensus        87 L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i  166 (566)
                      |++++|.+....+..|..+++|++|++++|+++...+..+..+++|++|++++|.+. .+|..+..+++|++|++++|.+
T Consensus        69 L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l  147 (229)
T 3e6j_A           69 LYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQL  147 (229)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCC
T ss_pred             EECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcC
Confidence            888888887666666778888888888888887666666778888888888888887 6777788888888888888888


Q ss_pred             cccCCcccccCCcccEeeccccccee
Q 046712          167 GGRIPSTISHVRNLISFNVAYNQFSG  192 (566)
Q Consensus       167 ~~~~~~~l~~l~~L~~L~l~~~~~~~  192 (566)
                      ....+..+..+++|+.|++++|.+..
T Consensus       148 ~~~~~~~~~~l~~L~~L~l~~N~~~c  173 (229)
T 3e6j_A          148 KSIPHGAFDRLSSLTHAYLFGNPWDC  173 (229)
T ss_dssp             CCCCTTTTTTCTTCCEEECTTSCBCT
T ss_pred             CccCHHHHhCCCCCCEEEeeCCCccC
Confidence            75555667788888888888887653

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.79  E-value=1.3e-18  Score=169.06  Aligned_cols=206  Identities=14%  Similarity=0.065  Sum_probs=143.6

Q ss_pred             CcccccccCCCCCcEEEEEcCCCccccccCccCcCCCCCCEEecCCCcccccCCcccCCCCCCCEEeCCCCcCCCc-Ccc
Q 046712           22 CQWTGVTCGHRRQRVTGLDLRHQSVGGVLSPFVGNLNFLRSINLPNNSFRGKIPHEVGNLFRLQNLTLTNNYFLGK-ILT  100 (566)
Q Consensus        22 ~~~~~~~~~~~~~~~~~l~l~~~~i~~~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~l~~~~l~~~-~~~  100 (566)
                      |.|..|.|+            +++++. +|..+  .+++++|++++|.|+...+++|.++++|++|++++|.+.+. ...
T Consensus         9 C~~~~v~C~------------~~~Lt~-iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~   73 (350)
T 4ay9_X            9 CSNRVFLCQ------------ESKVTE-IPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEAD   73 (350)
T ss_dssp             EETTEEEEE------------STTCCS-CCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTT
T ss_pred             eeCCEEEec------------CCCCCc-cCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChh
Confidence            566666664            445553 34334  36889999999999865667889999999999999987554 445


Q ss_pred             ccccCCCCcE-EEcCCCcCCCCcchhccCCCCCCEEecccccCCCCCCccccCCCCCCEEEccC-CcCcccCCcccccCC
Q 046712          101 DLSHCSNLMK-FEASNNKLEGEIPVKISNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRG-NRLGGRIPSTISHVR  178 (566)
Q Consensus       101 ~~~~l~~L~~-L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~-~~i~~~~~~~l~~l~  178 (566)
                      .|.+++++++ +.+..|++....+..+..+++|++|++++|.+....+..+....++..+++.+ +.+....+.+|..+.
T Consensus        74 ~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~  153 (350)
T 4ay9_X           74 VFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLS  153 (350)
T ss_dssp             SBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSB
T ss_pred             HhhcchhhhhhhcccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcc
Confidence            6788888775 55566788866677888899999999999988855555566677788888865 455544445566554


Q ss_pred             -cccEeecccccceecCCcccCcccCceEecccccccccCCCCCCCCCCCCcEEEcccccccccC
Q 046712          179 -NLISFNVAYNQFSGMIPPIYNISSLQYIFIHTNRFHGSVPLDNGVNLPNLRYFSISGNNLTGSL  242 (566)
Q Consensus       179 -~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~  242 (566)
                       .++.|++++|.+..+.+..+...+++++.+.++.....++...+..+++|++|++++|+++...
T Consensus       154 ~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp  218 (350)
T 4ay9_X          154 FESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLP  218 (350)
T ss_dssp             SSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCC
T ss_pred             hhhhhhccccccccCCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccC
Confidence             5778888888887776666666677777776544434566555556666666666666665433

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.79  E-value=1e-18  Score=156.54  Aligned_cols=173  Identities=21%  Similarity=0.191  Sum_probs=99.9

Q ss_pred             CeecccCCcccccccccccCCCCCCEEEccCCcccccCCccccCCCCCCeEeccCccccccCCCCCcCCCCCcEEEccCC
Q 046712          356 NALGVESNQLAGTIPLAIGELKSIQILFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSNGNCQNLILLTTRKN  435 (566)
Q Consensus       356 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~  435 (566)
                      +.++.+++.++. .|..+  .++|++|++++|.+++..+..+..+++|++|++++|++.+..+..+..+++|++|++++|
T Consensus        10 ~~v~c~~~~l~~-~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n   86 (208)
T 2o6s_A           10 TTVECYSQGRTS-VPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN   86 (208)
T ss_dssp             TEEECCSSCCSS-CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEecCCCccC-CCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC
Confidence            456666666653 33322  357888888888877555556777788888888888777555555667777777777777


Q ss_pred             cceeccchhhhhhcccceEEEccCCcccccCCcCccCCCCCCEEeCccccccccCCccccCCCCCcEEeCCCCcccccCC
Q 046712          436 KLSGIVPRQLLRIITLSVLLDLSDNLLSGHFPTKVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTISIP  515 (566)
Q Consensus       436 ~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~  515 (566)
                      .+.+..+                         ..|..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+
T Consensus        87 ~l~~~~~-------------------------~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~  141 (208)
T 2o6s_A           87 QLQSLPN-------------------------GVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPD  141 (208)
T ss_dssp             CCCCCCT-------------------------TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred             cCCccCH-------------------------hHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCH
Confidence            6653322                         334445555555555555553333344555555555555555554333


Q ss_pred             cCCcCCCCCCEEeCCCCccccccCccccccccCceeecccCcCcccCC
Q 046712          516 STLSSLKSITELDLSRNNLSGHIPQYLENLSFLLFLNMSYNHFEGKVP  563 (566)
Q Consensus       516 ~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p  563 (566)
                      ..+..+++|++|++++|++..       .+++|+.|++++|+++|.+|
T Consensus       142 ~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g~ip  182 (208)
T 2o6s_A          142 GVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVR  182 (208)
T ss_dssp             TTTTTCTTCCEEECCSCCBCC-------CTTTTHHHHHHHHHCTTTBB
T ss_pred             HHhccCCCccEEEecCCCeec-------CCCCHHHHHHHHHhCCceee
Confidence            344555555555555554432       23345555555555555555

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.78  E-value=1.7e-19  Score=184.21  Aligned_cols=212  Identities=19%  Similarity=0.284  Sum_probs=156.6

Q ss_pred             CCCCCCCCCcCCCCCC-----ccccc-ccCCCCCcEEEEEcCCCccccccCccCcCCCCCCEEecCCCcccccCCcccCC
Q 046712            7 DPLGVTSSWNNSINLC-----QWTGV-TCGHRRQRVTGLDLRHQSVGGVLSPFVGNLNFLRSINLPNNSFRGKIPHEVGN   80 (566)
Q Consensus         7 ~~~~~~~~~~~~~~~~-----~~~~~-~~~~~~~~~~~l~l~~~~i~~~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~~~   80 (566)
                      ++...+.+|......|     .|.++ .|..  .++++|++++|++++ +|..+  +++|++|++++|.++ .+|   ..
T Consensus        28 ~~~~~l~~W~~~~~~~~~~~~~~~~l~~C~~--~~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~   98 (571)
T 3cvr_A           28 DYFSAWDKWEKQALPGENRNEAVSLLKECLI--NQFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---EL   98 (571)
T ss_dssp             HHHHHHHHHHTTCCTTCCHHHHHHHHHHHHH--TTCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CC
T ss_pred             hHHHHHHHHhccCCccccccchhhhcccccc--CCccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cc
Confidence            3344567898877778     68888 5642  589999999999987 55544  389999999999998 677   55


Q ss_pred             CCCCCEEeCCCCcCCCcCccccccCCCCcEEEcCCCcCCCCcchhccCCCCCCEEecccccCCCCCCccccCCCCCCEEE
Q 046712           81 LFRLQNLTLTNNYFLGKILTDLSHCSNLMKFEASNNKLEGEIPVKISNLLMLQILNIAENHLKGQLPASIGNLSALQEID  160 (566)
Q Consensus        81 l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~  160 (566)
                      +++|++|++++|.+++ .+. +..  +|++|++++|.+++ +|.   .+++|++|++++|.+++ +|.   .+++|++|+
T Consensus        99 l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~  166 (571)
T 3cvr_A           99 PASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLS  166 (571)
T ss_dssp             CTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEE
T ss_pred             cCCCCEEEccCCCCCC-cch-hhc--CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEE
Confidence            7899999999999987 444 555  99999999999985 554   68899999999999984 665   578999999


Q ss_pred             ccCCcCcccCCcccccCCcccEeecccccceecCCcccCcccC-------ceEecccccccccCCCCCCCCCCCCcEEEc
Q 046712          161 VRGNRLGGRIPSTISHVRNLISFNVAYNQFSGMIPPIYNISSL-------QYIFIHTNRFHGSVPLDNGVNLPNLRYFSI  233 (566)
Q Consensus       161 l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L-------~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l  233 (566)
                      +++|.+++ +|. +.  ++|+.|++++|.+...+. +..  +|       +.|++++|.++ .+|...+ .+++|+.|++
T Consensus       167 Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~-~l~~L~~L~L  237 (571)
T 3cvr_A          167 VRNNQLTF-LPE-LP--ESLEALDVSTNLLESLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENIL-SLDPTCTIIL  237 (571)
T ss_dssp             CCSSCCSC-CCC-CC--TTCCEEECCSSCCSSCCC-CC----------CCEEEECCSSCCC-CCCGGGG-GSCTTEEEEC
T ss_pred             CCCCCCCC-cch-hh--CCCCEEECcCCCCCchhh-HHH--hhhcccccceEEecCCCcce-ecCHHHh-cCCCCCEEEe
Confidence            99999885 666 65  889999999988875544 332  45       66666666665 4555554 3666666666


Q ss_pred             ccccccccCcccccc
Q 046712          234 SGNNLTGSLQDSLSN  248 (566)
Q Consensus       234 ~~~~~~~~~~~~l~~  248 (566)
                      ++|.+++..+..+..
T Consensus       238 ~~N~l~~~~p~~l~~  252 (571)
T 3cvr_A          238 EDNPLSSRIRESLSQ  252 (571)
T ss_dssp             CSSSCCHHHHHHHHH
T ss_pred             eCCcCCCcCHHHHHH
Confidence            666665544444433

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.78  E-value=2.3e-18  Score=175.92  Aligned_cols=190  Identities=24%  Similarity=0.370  Sum_probs=140.0

Q ss_pred             cCCcEEEccCCCCCCCcchhhhccCCCCeecccCCcccccccccccCCCCCCEEEccCCcccccCCccccCCCCCCeEec
Q 046712          329 TTMTEIAIGSNQISDTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSIQILFLNENFLRGTIPSSLGNLTLLTQLIL  408 (566)
Q Consensus       329 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l  408 (566)
                      ..++.|++++|.+++ +|..+  +++|++|++++|.++ .+|   ..+++|++|++++|.+++ +|. +..  +|+.|++
T Consensus        59 ~~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~L  127 (571)
T 3cvr_A           59 NQFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDV  127 (571)
T ss_dssp             TTCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEEC
T ss_pred             CCccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEEC
Confidence            478888888888876 55444  378888888888888 444   456888888888888885 555 544  8888888


Q ss_pred             cCccccccCCCCCcCCCCCcEEEccCCcceeccchhhhhhcccceEEEccCCcccccCCcCccCCCCCCEEeCccccccc
Q 046712          409 EVNNLQGKIPPSNGNCQNLILLTTRKNKLSGIVPRQLLRIITLSVLLDLSDNLLSGHFPTKVGNLKNLVSLDISSNMFSG  488 (566)
Q Consensus       409 ~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~l~~  488 (566)
                      ++|++.+ +|.   .+++|+.|++++|.+.+ +|.    ..+.++.|++++|.+.+ .+. |.  ++|+.|++++|.++ 
T Consensus       128 s~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~----~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-  193 (571)
T 3cvr_A          128 DNNQLTM-LPE---LPALLEYINADNNQLTM-LPE----LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-  193 (571)
T ss_dssp             CSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC----CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-
T ss_pred             CCCcCCC-CCC---cCccccEEeCCCCccCc-CCC----cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-
Confidence            8888875 554   57888888888888875 343    33455888888888875 444 54  78888888888887 


Q ss_pred             cCCccccCCCCC-------cEEeCCCCcccccCCcCCcCCCCCCEEeCCCCccccccCcccccccc
Q 046712          489 EIPTTLGGCTSL-------EYLGMQDNSFTISIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSF  547 (566)
Q Consensus       489 ~~~~~~~~~~~L-------~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~  547 (566)
                      .+|. |..  +|       ++|+|++|.++ .+|..+..+++|+.|+|++|++++.+|..+..++.
T Consensus       194 ~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~  255 (571)
T 3cvr_A          194 SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTA  255 (571)
T ss_dssp             SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHHH
T ss_pred             chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhhc
Confidence            5665 543  66       88888888888 57777777888888888888888777777766543

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.77  E-value=4.7e-18  Score=153.21  Aligned_cols=151  Identities=19%  Similarity=0.223  Sum_probs=118.3

Q ss_pred             EEcCCCccccccCccCcCCCCCCEEecCCCcccccCCcccCCCCCCCEEeCCCCcCCCcCccccccCCCCcEEEcCCCcC
Q 046712           39 LDLRHQSVGGVLSPFVGNLNFLRSINLPNNSFRGKIPHEVGNLFRLQNLTLTNNYFLGKILTDLSHCSNLMKFEASNNKL  118 (566)
Q Consensus        39 l~l~~~~i~~~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~  118 (566)
                      ++.++++++.. |..+.  ++|++|++++|.++...+.+|.++++|++|++++|.++...+..|.++++|++|++++|.+
T Consensus        16 v~c~~~~l~~i-P~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l   92 (220)
T 2v9t_B           16 VDCRGKGLTEI-PTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKI   92 (220)
T ss_dssp             EECTTSCCSSC-CSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCC
T ss_pred             EEcCCCCcCcC-CCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcC
Confidence            34445555533 33333  6788888888888866677888888888888888888877788888888888888888888


Q ss_pred             CCCcchhccCCCCCCEEecccccCCCCCCccccCCCCCCEEEccCCcCcccCCcccccCCcccEeeccccccee
Q 046712          119 EGEIPVKISNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVAYNQFSG  192 (566)
Q Consensus       119 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~  192 (566)
                      +...+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+..
T Consensus        93 ~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c  166 (220)
T 2v9t_B           93 TELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC  166 (220)
T ss_dssp             CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred             CccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence            86555567788888888888888887777888888888888888888886666678888888888888887753

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.76  E-value=1e-17  Score=151.03  Aligned_cols=152  Identities=20%  Similarity=0.197  Sum_probs=89.6

Q ss_pred             CEEEccCCcccccCCccccCCCCCCeEeccCccccccCC-CCCcCCCCCcEEEccCCcceeccchhhhhhcccceEEEcc
Q 046712          380 QILFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIP-PSNGNCQNLILLTTRKNKLSGIVPRQLLRIITLSVLLDLS  458 (566)
Q Consensus       380 ~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~  458 (566)
                      +.+++++|.++ .+|..+.  +.+++|++++|.+.+..+ ..+..+++|++|++++|.+.+..+..+..+..+ +.|+++
T Consensus        14 ~~l~~s~n~l~-~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L-~~L~Ls   89 (220)
T 2v70_A           14 TTVDCSNQKLN-KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGV-NEILLT   89 (220)
T ss_dssp             TEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTC-CEEECC
T ss_pred             CEeEeCCCCcc-cCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCC-CEEECC
Confidence            47888888887 4555443  456788888888876543 346777778887777777765444444444333 555555


Q ss_pred             CCcccccCCcCccCCCCCCEEeCccccccccCCccccCCCCCcEEeCCCCcccccCCcCCcCCCCCCEEeCCCCccc
Q 046712          459 DNLLSGHFPTKVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTISIPSTLSSLKSITELDLSRNNLS  535 (566)
Q Consensus       459 ~~~~~~~~~~~~~~~~~L~~L~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~  535 (566)
                      +|.+.+..+..|..+++|++|++++|.+.+..+..|..+++|++|+|++|.++...|..|..+++|+.|++++|++.
T Consensus        90 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  166 (220)
T 2v70_A           90 SNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN  166 (220)
T ss_dssp             SSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred             CCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence            55555444444555555555555555555444455555555555555555555444555555555555555555554

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.76  E-value=3.4e-18  Score=161.34  Aligned_cols=189  Identities=25%  Similarity=0.357  Sum_probs=144.7

Q ss_pred             cEEEccCCCCCCCcchhhhccCCCCeecccCCcccccccccccCCCCCCEEEccCCcccccCCccccCCCCCCeEeccCc
Q 046712          332 TEIAIGSNQISDTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSIQILFLNENFLRGTIPSSLGNLTLLTQLILEVN  411 (566)
Q Consensus       332 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~  411 (566)
                      ..+.+....+.+..  .+..+++|++|++++|.+.+. + .+..+++|++|++++|.+++..+  +..+++|+.|++++|
T Consensus        27 ~~~~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n  100 (291)
T 1h6t_A           27 IKDNLKKKSVTDAV--TQNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDEN  100 (291)
T ss_dssp             HHHHTTCSCTTSEE--CHHHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSS
T ss_pred             HHHHhcCCCccccc--chhhcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCC
Confidence            33445555554322  246789999999999998854 3 47889999999999999985433  888999999999999


Q ss_pred             cccccCCCCCcCCCCCcEEEccCCcceeccchhhhhhcccceEEEccCCcccccCCcCccCCCCCCEEeCccccccccCC
Q 046712          412 NLQGKIPPSNGNCQNLILLTTRKNKLSGIVPRQLLRIITLSVLLDLSDNLLSGHFPTKVGNLKNLVSLDISSNMFSGEIP  491 (566)
Q Consensus       412 ~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~l~~~~~  491 (566)
                      .+.+ ++ .+..+++|++|++++|.+.+.  ..+..+..+ +.|++++|.+.+.  ..+..+++|+.|++++|.+.+..+
T Consensus       101 ~l~~-~~-~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L-~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~  173 (291)
T 1h6t_A          101 KVKD-LS-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQL-ESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP  173 (291)
T ss_dssp             CCCC-GG-GGTTCTTCCEEECTTSCCCCC--GGGGGCTTC-CEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG
T ss_pred             cCCC-Ch-hhccCCCCCEEECCCCcCCCC--hhhcCCCCC-CEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh
Confidence            9875 33 478899999999999998753  345554444 8888888888754  567788888888888888875433


Q ss_pred             ccccCCCCCcEEeCCCCcccccCCcCCcCCCCCCEEeCCCCccccc
Q 046712          492 TTLGGCTSLEYLGMQDNSFTISIPSTLSSLKSITELDLSRNNLSGH  537 (566)
Q Consensus       492 ~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~  537 (566)
                        +..+++|++|++++|.+++ ++ .+..+++|+.|++++|++...
T Consensus       174 --l~~l~~L~~L~L~~N~i~~-l~-~l~~l~~L~~L~l~~n~i~~~  215 (291)
T 1h6t_A          174 --LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECLNK  215 (291)
T ss_dssp             --GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEEEEEECC
T ss_pred             --hcCCCccCEEECCCCcCCC-Ch-hhccCCCCCEEECcCCcccCC
Confidence              7788888888888888874 33 477888888888888888753

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.75  E-value=1e-17  Score=150.99  Aligned_cols=153  Identities=18%  Similarity=0.215  Sum_probs=131.0

Q ss_pred             EEEcCCCccccccCccCcCCCCCCEEecCCCcccccCC-cccCCCCCCCEEeCCCCcCCCcCccccccCCCCcEEEcCCC
Q 046712           38 GLDLRHQSVGGVLSPFVGNLNFLRSINLPNNSFRGKIP-HEVGNLFRLQNLTLTNNYFLGKILTDLSHCSNLMKFEASNN  116 (566)
Q Consensus        38 ~l~l~~~~i~~~~~~~~~~l~~L~~L~ls~~~l~~~~~-~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~  116 (566)
                      +++++++.++. +|..+.  +.+++|++++|.+++..+ .+|.++++|++|++++|.++...+..|.++++|++|++++|
T Consensus        15 ~l~~s~n~l~~-iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N   91 (220)
T 2v70_A           15 TVDCSNQKLNK-IPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN   91 (220)
T ss_dssp             EEECCSSCCSS-CCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             EeEeCCCCccc-CccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence            56777777775 344443  457899999999986644 45889999999999999998888888999999999999999


Q ss_pred             cCCCCcchhccCCCCCCEEecccccCCCCCCccccCCCCCCEEEccCCcCcccCCcccccCCcccEeecccccceec
Q 046712          117 KLEGEIPVKISNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVAYNQFSGM  193 (566)
Q Consensus       117 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~  193 (566)
                      .+++..+..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+++..|..|..+++|+.|++++|.+...
T Consensus        92 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~  168 (220)
T 2v70_A           92 RLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCN  168 (220)
T ss_dssp             CCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECS
T ss_pred             ccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCC
Confidence            99977787899999999999999999977788899999999999999999977788999999999999999988743

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.75  E-value=2.8e-17  Score=148.17  Aligned_cols=146  Identities=20%  Similarity=0.231  Sum_probs=127.1

Q ss_pred             CcccccccCCCC---------CcEEEEEcCCCccccccCccCcCCCCCCEEecCCCcccccCCcccCCCCCCCEEeCCCC
Q 046712           22 CQWTGVTCGHRR---------QRVTGLDLRHQSVGGVLSPFVGNLNFLRSINLPNNSFRGKIPHEVGNLFRLQNLTLTNN   92 (566)
Q Consensus        22 ~~~~~~~~~~~~---------~~~~~l~l~~~~i~~~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~l~~~   92 (566)
                      |.|..+.|....         +.+++|++++|.++...+..|..+++|++|++++|.+++..|.+|.++++|++|++++|
T Consensus        11 C~~~~v~c~~~~l~~iP~~l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N   90 (220)
T 2v9t_B           11 CSNNIVDCRGKGLTEIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN   90 (220)
T ss_dssp             EETTEEECTTSCCSSCCSSCCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred             ECCCEEEcCCCCcCcCCCccCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence            788888887533         47899999999999888888999999999999999998778888999999999999999


Q ss_pred             cCCCcCccccccCCCCcEEEcCCCcCCCCcchhccCCCCCCEEecccccCCCCCCccccCCCCCCEEEccCCcCc
Q 046712           93 YFLGKILTDLSHCSNLMKFEASNNKLEGEIPVKISNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLG  167 (566)
Q Consensus        93 ~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~  167 (566)
                      .++...+..|..+++|++|++++|++++..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.
T Consensus        91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  165 (220)
T 2v9t_B           91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI  165 (220)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence            998777777888999999999999998877888889999999999999998766677888999999999999875

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.75  E-value=7.7e-18  Score=164.36  Aligned_cols=174  Identities=17%  Similarity=0.204  Sum_probs=94.8

Q ss_pred             EEEcCCCccccccCccCcCCCCCCEEecCCCcccccCCcccC-CCCCCCEEeCCCCcCCCcCccccccCCCCcEEEcCCC
Q 046712           38 GLDLRHQSVGGVLSPFVGNLNFLRSINLPNNSFRGKIPHEVG-NLFRLQNLTLTNNYFLGKILTDLSHCSNLMKFEASNN  116 (566)
Q Consensus        38 ~l~l~~~~i~~~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~~-~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~  116 (566)
                      ++++++++++.. |..+.  +.+++|++++|.+++..+..+. ++++|++|++++|.+....+..|.++++|++|++++|
T Consensus        22 ~l~c~~~~l~~i-P~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N   98 (361)
T 2xot_A           22 ILSCSKQQLPNV-PQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN   98 (361)
T ss_dssp             EEECCSSCCSSC-CSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             EEEeCCCCcCcc-CccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC
Confidence            344455555432 22222  3456666666666554555554 6666666666666665555555666666666666666


Q ss_pred             cCCCCcchhccCCCCCCEEecccccCCCCCCccccCCCCCCEEEccCCcCcccCCccc---ccCCcccEeecccccceec
Q 046712          117 KLEGEIPVKISNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTI---SHVRNLISFNVAYNQFSGM  193 (566)
Q Consensus       117 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l---~~l~~L~~L~l~~~~~~~~  193 (566)
                      +++...+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.++...+..+   ..+++|+.|++++|.+...
T Consensus        99 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l  178 (361)
T 2xot_A           99 HLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKL  178 (361)
T ss_dssp             CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCC
T ss_pred             cCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCcc
Confidence            6654444455566666666666666654445556666666666666666653222223   3456666666666665544


Q ss_pred             CC-cccCccc--CceEeccccccc
Q 046712          194 IP-PIYNISS--LQYIFIHTNRFH  214 (566)
Q Consensus       194 ~~-~l~~~~~--L~~L~l~~~~~~  214 (566)
                      .. .+..++.  ++.|++++|.+.
T Consensus       179 ~~~~~~~l~~~~l~~l~l~~N~~~  202 (361)
T 2xot_A          179 PLTDLQKLPAWVKNGLYLHNNPLE  202 (361)
T ss_dssp             CHHHHHHSCHHHHTTEECCSSCEE
T ss_pred             CHHHhhhccHhhcceEEecCCCcc
Confidence            43 3333443  355666665543

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.74  E-value=8.3e-18  Score=158.65  Aligned_cols=170  Identities=29%  Similarity=0.380  Sum_probs=142.7

Q ss_pred             cCCcEEEccCCCCCCCcchhhhccCCCCeecccCCcccccccccccCCCCCCEEEccCCcccccCCccccCCCCCCeEec
Q 046712          329 TTMTEIAIGSNQISDTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSIQILFLNENFLRGTIPSSLGNLTLLTQLIL  408 (566)
Q Consensus       329 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l  408 (566)
                      +.++.|++++|.+... + .+..+++|++|++++|.+++..+  +..+++|++|++++|.+++ + ..+..+++|++|++
T Consensus        46 ~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L  119 (291)
T 1h6t_A           46 NSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-L-SSLKDLKKLKSLSL  119 (291)
T ss_dssp             HTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-G-GGGTTCTTCCEEEC
T ss_pred             CcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-C-hhhccCCCCCEEEC
Confidence            7899999999998754 3 47889999999999999986554  8899999999999999974 3 35888999999999


Q ss_pred             cCccccccCCCCCcCCCCCcEEEccCCcceeccchhhhhhcccceEEEccCCcccccCCcCccCCCCCCEEeCccccccc
Q 046712          409 EVNNLQGKIPPSNGNCQNLILLTTRKNKLSGIVPRQLLRIITLSVLLDLSDNLLSGHFPTKVGNLKNLVSLDISSNMFSG  488 (566)
Q Consensus       409 ~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~l~~  488 (566)
                      ++|.+.+.  ..+..+++|+.|++++|.+.+.  ..+..+..+ +.|++++|.+.+..+  +..+++|+.|++++|.+.+
T Consensus       120 ~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L-~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~  192 (291)
T 1h6t_A          120 EHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKL-DTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD  192 (291)
T ss_dssp             TTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTC-SEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB
T ss_pred             CCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCC-CEEEccCCccccchh--hcCCCccCEEECCCCcCCC
Confidence            99998853  4678899999999999998865  455555555 999999999986554  8899999999999999984


Q ss_pred             cCCccccCCCCCcEEeCCCCccccc
Q 046712          489 EIPTTLGGCTSLEYLGMQDNSFTIS  513 (566)
Q Consensus       489 ~~~~~~~~~~~L~~L~L~~n~~~~~  513 (566)
                       ++ .+..+++|+.|++++|+++..
T Consensus       193 -l~-~l~~l~~L~~L~l~~n~i~~~  215 (291)
T 1h6t_A          193 -LR-ALAGLKNLDVLELFSQECLNK  215 (291)
T ss_dssp             -CG-GGTTCTTCSEEEEEEEEEECC
T ss_pred             -Ch-hhccCCCCCEEECcCCcccCC
Confidence             44 488899999999999998853

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.74  E-value=3.2e-17  Score=169.43  Aligned_cols=180  Identities=26%  Similarity=0.337  Sum_probs=115.8

Q ss_pred             hhccCCCCeecccCCcccccccccccCCCCCCEEEccCCcccccCCccccCCCCCCeEeccCccccccCCCCCcCCCCCc
Q 046712          349 IANLVNLNALGVESNQLAGTIPLAIGELKSIQILFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSNGNCQNLI  428 (566)
Q Consensus       349 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~  428 (566)
                      +..+++|+.|++++|.+... + .+..+++|+.|+|++|.+.+..+  +..+++|+.|++++|.+.+ + ..+..+++|+
T Consensus        39 ~~~L~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~  112 (605)
T 1m9s_A           39 QNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-L-SSLKDLKKLK  112 (605)
T ss_dssp             HHHHTTCCCCBCTTCCCCCC-T-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-C-TTSTTCTTCC
T ss_pred             hhcCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-C-hhhccCCCCC
Confidence            34566666666666666532 2 35666666666666666653322  5566666666666666653 2 2466666677


Q ss_pred             EEEccCCcceeccchhhhhhcccceEEEccCCcccccCCcCccCCCCCCEEeCccccccccCCccccCCCCCcEEeCCCC
Q 046712          429 LLTTRKNKLSGIVPRQLLRIITLSVLLDLSDNLLSGHFPTKVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDN  508 (566)
Q Consensus       429 ~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~l~~~~~~~~~~~~~L~~L~L~~n  508 (566)
                      .|++++|.+.+.  ..+..++.+ +.|++++|.+.+.  ..+..+++|+.|+|++|.+.+..+  +..+++|+.|+|++|
T Consensus       113 ~L~Ls~N~l~~l--~~l~~l~~L-~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N  185 (605)
T 1m9s_A          113 SLSLEHNGISDI--NGLVHLPQL-ESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKN  185 (605)
T ss_dssp             EEECTTSCCCCC--GGGGGCTTC-SEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSS
T ss_pred             EEEecCCCCCCC--ccccCCCcc-CEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCC
Confidence            777766666542  234444333 6677777766644  456778888888888888875444  777888888888888


Q ss_pred             cccccCCcCCcCCCCCCEEeCCCCccccccCcccc
Q 046712          509 SFTISIPSTLSSLKSITELDLSRNNLSGHIPQYLE  543 (566)
Q Consensus       509 ~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~  543 (566)
                      .+.+ + ..+..+++|+.|+|++|++.......+.
T Consensus       186 ~i~~-l-~~l~~l~~L~~L~L~~N~l~~~p~~~~~  218 (605)
T 1m9s_A          186 HISD-L-RALAGLKNLDVLELFSQECLNKPINHQS  218 (605)
T ss_dssp             CCCB-C-GGGTTCTTCSEEECCSEEEECCCCCCCS
T ss_pred             CCCC-C-hHHccCCCCCEEEccCCcCcCCcccccc
Confidence            8774 3 4577788888888888887754333333

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.73  E-value=2.1e-17  Score=161.23  Aligned_cols=176  Identities=23%  Similarity=0.153  Sum_probs=113.9

Q ss_pred             CeecccCCcccccccccccCCCCCCEEEccCCcccccCCcccc-CCCCCCeEeccCccccccCCCCCcCCCCCcEEEccC
Q 046712          356 NALGVESNQLAGTIPLAIGELKSIQILFLNENFLRGTIPSSLG-NLTLLTQLILEVNNLQGKIPPSNGNCQNLILLTTRK  434 (566)
Q Consensus       356 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~-~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~  434 (566)
                      +.++++++.++. +|..+.  +.++.|++++|.+++..+..+. .+++|+.|++++|.+.+..+..|..+++|++|++++
T Consensus        21 ~~l~c~~~~l~~-iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~   97 (361)
T 2xot_A           21 NILSCSKQQLPN-VPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS   97 (361)
T ss_dssp             TEEECCSSCCSS-CCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CEEEeCCCCcCc-cCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence            466666666663 343332  3466777777777655555555 667777777777776655555666666666666666


Q ss_pred             CcceeccchhhhhhcccceEEEccCCcccccCCcCccCCCCCCEEeCccccccccCCccccCCCCCcEEeCCCCcccccC
Q 046712          435 NKLSGIVPRQLLRIITLSVLLDLSDNLLSGHFPTKVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTISI  514 (566)
Q Consensus       435 ~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~  514 (566)
                      |++.                         +..+..|..+++|+.|++++|.+....+..|..+++|++|+|++|.++...
T Consensus        98 N~l~-------------------------~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~  152 (361)
T 2xot_A           98 NHLH-------------------------TLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFP  152 (361)
T ss_dssp             SCCC-------------------------EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCC
T ss_pred             CcCC-------------------------cCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeC
Confidence            6554                         334445666777777777777777666667777777777777777777433


Q ss_pred             CcCC---cCCCCCCEEeCCCCccccccCcccccccc--CceeecccCcCc
Q 046712          515 PSTL---SSLKSITELDLSRNNLSGHIPQYLENLSF--LLFLNMSYNHFE  559 (566)
Q Consensus       515 ~~~l---~~l~~L~~L~l~~n~~~~~~~~~l~~l~~--L~~L~l~~n~~~  559 (566)
                      +..|   ..+++|+.|+|++|++....+..+..++.  |+.|++++|+++
T Consensus       153 ~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~  202 (361)
T 2xot_A          153 VELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE  202 (361)
T ss_dssp             GGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred             HHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCcc
Confidence            3334   45777788888887777555566666665  377777777654

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.72  E-value=1.2e-16  Score=145.01  Aligned_cols=150  Identities=19%  Similarity=0.235  Sum_probs=88.4

Q ss_pred             CEEecCCCcccccCCcccCCCCCCCEEeCCCCcCCCcCccccccCCCCcEEEcCCCcCCCCcchhccCCCCCCEEecccc
Q 046712           61 RSINLPNNSFRGKIPHEVGNLFRLQNLTLTNNYFLGKILTDLSHCSNLMKFEASNNKLEGEIPVKISNLLMLQILNIAEN  140 (566)
Q Consensus        61 ~~L~ls~~~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~  140 (566)
                      +.++.+++.++ .+|..+.  ++|++|++++|.+.+..+..|..+++|++|++++|++....+..+..+++|++|++++|
T Consensus        22 ~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N   98 (229)
T 3e6j_A           22 TTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN   98 (229)
T ss_dssp             TEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCC
Confidence            44556555554 4444332  56666666666666555555666666666666666665444444556666666666666


Q ss_pred             cCCCCCCccccCCCCCCEEEccCCcCcccCCcccccCCcccEeecccccceecCC-cccCcccCceEeccccccc
Q 046712          141 HLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVAYNQFSGMIP-PIYNISSLQYIFIHTNRFH  214 (566)
Q Consensus       141 ~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~  214 (566)
                      .+.+..+..+..+++|++|++++|.++ .+|..+..+++|+.|++++|.+....+ .+..+++|+.|++++|.+.
T Consensus        99 ~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~  172 (229)
T 3e6j_A           99 QLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWD  172 (229)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred             cCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence            666444444556666666666666665 555566666666666666666655544 3455666666666666554

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.72  E-value=1.1e-17  Score=172.87  Aligned_cols=193  Identities=25%  Similarity=0.311  Sum_probs=160.9

Q ss_pred             cCCCCeecccCCcccccccccccCCCCCCEEEccCCcccccCCccccCCCCCCeEeccCccccccCCCCCcCCCCCcEEE
Q 046712          352 LVNLNALGVESNQLAGTIPLAIGELKSIQILFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSNGNCQNLILLT  431 (566)
Q Consensus       352 l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~  431 (566)
                      +..+..+.+..+.+.+..+  +..+++|+.|++++|.+.. ++ .+..+++|+.|++++|.+.+..+  +..+++|+.|+
T Consensus        20 l~~l~~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~   93 (605)
T 1m9s_A           20 FAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLF   93 (605)
T ss_dssp             HHHHHHHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEE
T ss_pred             HHHHHHHhccCCCcccccc--hhcCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEE
Confidence            3445666777777764433  5678899999999999974 33 68889999999999999986544  88999999999


Q ss_pred             ccCCcceeccchhhhhhcccceEEEccCCcccccCCcCccCCCCCCEEeCccccccccCCccccCCCCCcEEeCCCCccc
Q 046712          432 TRKNKLSGIVPRQLLRIITLSVLLDLSDNLLSGHFPTKVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFT  511 (566)
Q Consensus       432 l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~~~  511 (566)
                      +++|.+.+.  ..+..+..+ +.|++++|.+.+.  ..+..+++|+.|+|++|.+.+.  ..+..+++|+.|+|++|.+.
T Consensus        94 Ls~N~l~~l--~~l~~l~~L-~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~  166 (605)
T 1m9s_A           94 LDENKIKDL--SSLKDLKKL-KSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQIS  166 (605)
T ss_dssp             CCSSCCCCC--TTSTTCTTC-CEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCC
T ss_pred             CcCCCCCCC--hhhccCCCC-CEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCC
Confidence            999999853  355555555 9999999999864  4688999999999999999854  67899999999999999999


Q ss_pred             ccCCcCCcCCCCCCEEeCCCCccccccCccccccccCceeecccCcCccc
Q 046712          512 ISIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLLFLNMSYNHFEGK  561 (566)
Q Consensus       512 ~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~  561 (566)
                      +..|  +..+++|+.|+|++|.+.+.  ..+..+++|+.|+|++|++++.
T Consensus       167 ~~~~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~~  212 (605)
T 1m9s_A          167 DIVP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNK  212 (605)
T ss_dssp             CCGG--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEECC
T ss_pred             Cchh--hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcCC
Confidence            6554  89999999999999999854  4589999999999999999875

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.71  E-value=4.6e-17  Score=144.23  Aligned_cols=148  Identities=14%  Similarity=0.204  Sum_probs=68.3

Q ss_pred             CcEEEEEcCCCccccccCccCcCCCCCCEEecCCCcccccCCcccCCCCCCCEEeCCCCcCCCcCccccccCCCCcEEEc
Q 046712           34 QRVTGLDLRHQSVGGVLSPFVGNLNFLRSINLPNNSFRGKIPHEVGNLFRLQNLTLTNNYFLGKILTDLSHCSNLMKFEA  113 (566)
Q Consensus        34 ~~~~~l~l~~~~i~~~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l  113 (566)
                      +++++|+++++.++. ++ .+..+++|++|++++|.+.  .+..+..+++|++|++++|.+++..+..+..+++|++|++
T Consensus        44 ~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L  119 (197)
T 4ezg_A           44 NSLTYITLANINVTD-LT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDI  119 (197)
T ss_dssp             HTCCEEEEESSCCSC-CT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEEC
T ss_pred             CCccEEeccCCCccC-hH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEe
Confidence            344455555555442 22 3445555555555555332  2224444555555555555544434444445555555555


Q ss_pred             CCCcCCCCcchhccCCCCCCEEeccccc-CCCCCCccccCCCCCCEEEccCCcCcccCCcccccCCcccEeeccccc
Q 046712          114 SNNKLEGEIPVKISNLLMLQILNIAENH-LKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVAYNQ  189 (566)
Q Consensus       114 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~  189 (566)
                      ++|.+++..+..+..+++|++|++++|. +. .++ .+..+++|++|++++|.+++ ++ .+..+++|+.|++++|.
T Consensus       120 s~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~  192 (197)
T 4ezg_A          120 SHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQT  192 (197)
T ss_dssp             CSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC-
T ss_pred             cCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcc
Confidence            5555444344444455555555555554 32 222 34444555555555554442 22 34444444444444444

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.70  E-value=3.1e-17  Score=145.34  Aligned_cols=152  Identities=18%  Similarity=0.284  Sum_probs=98.9

Q ss_pred             cCCCCCCEEecCCCcccccCCcccCCCCCCCEEeCCCCcCCCcCccccccCCCCcEEEcCCCcCCCCcchhccCCCCCCE
Q 046712           55 GNLNFLRSINLPNNSFRGKIPHEVGNLFRLQNLTLTNNYFLGKILTDLSHCSNLMKFEASNNKLEGEIPVKISNLLMLQI  134 (566)
Q Consensus        55 ~~l~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~  134 (566)
                      ..+++|++|++++|.++ .+| .+..+++|++|++++|.++  .+..+..+++|++|++++|.+++..+..+..+++|++
T Consensus        41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~  116 (197)
T 4ezg_A           41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL  116 (197)
T ss_dssp             HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred             hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence            56677777777777776 445 5677777777777777553  2335667777777777777776555666777777777


Q ss_pred             EecccccCCCCCCccccCCCCCCEEEccCCc-CcccCCcccccCCcccEeecccccceecCCcccCcccCceEecccccc
Q 046712          135 LNIAENHLKGQLPASIGNLSALQEIDVRGNR-LGGRIPSTISHVRNLISFNVAYNQFSGMIPPIYNISSLQYIFIHTNRF  213 (566)
Q Consensus       135 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~  213 (566)
                      |++++|.+.+..+..+..+++|++|++++|. +. .++ .+..+++|+.|++++|.+.+.. .+..+++|++|++++|.+
T Consensus       117 L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~~~-~l~~l~~L~~L~l~~N~i  193 (197)
T 4ezg_A          117 LDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHDYR-GIEDFPKLNQLYAFSQTI  193 (197)
T ss_dssp             EECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCCCT-TGGGCSSCCEEEECBC--
T ss_pred             EEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcChH-HhccCCCCCEEEeeCccc
Confidence            7777777765566667777777777777776 44 333 5666677777777776665432 444455555555555443

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.69  E-value=2.5e-17  Score=152.79  Aligned_cols=168  Identities=22%  Similarity=0.293  Sum_probs=102.1

Q ss_pred             cCCcEEEccCCCCCCCcchhhhccCCCCeecccCCcccccccccccCCCCCCEEEccCCcccccCCccccCCCCCCeEec
Q 046712          329 TTMTEIAIGSNQISDTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSIQILFLNENFLRGTIPSSLGNLTLLTQLIL  408 (566)
Q Consensus       329 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l  408 (566)
                      ..+..+++.++.+.+. + .+..+++|++|++++|.++.. + .+..+++|++|++++|.+++..+  +..+++|+.|++
T Consensus        19 ~~l~~l~l~~~~i~~~-~-~~~~l~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L   92 (263)
T 1xeu_A           19 ANAVKQNLGKQSVTDL-V-SQKELSGVQNFNGDNSNIQSL-A-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSV   92 (263)
T ss_dssp             HHHHHHHHTCSCTTSE-E-CHHHHTTCSEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEEC
T ss_pred             HHHHHHHhcCCCcccc-c-chhhcCcCcEEECcCCCcccc-h-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEEC
Confidence            3556666777776643 2 466777888888888877743 3 56777788888888887774333  777778888888


Q ss_pred             cCccccccCCCCCcCCCCCcEEEccCCcceeccchhhhhhcccceEEEccCCcccccCCcCccCCCCCCEEeCccccccc
Q 046712          409 EVNNLQGKIPPSNGNCQNLILLTTRKNKLSGIVPRQLLRIITLSVLLDLSDNLLSGHFPTKVGNLKNLVSLDISSNMFSG  488 (566)
Q Consensus       409 ~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~l~~  488 (566)
                      ++|++.+ ++.. .. ++|+.|++++|.+.+.                           ..+..+++|+.|++++|++.+
T Consensus        93 ~~N~l~~-l~~~-~~-~~L~~L~L~~N~l~~~---------------------------~~l~~l~~L~~L~Ls~N~i~~  142 (263)
T 1xeu_A           93 NRNRLKN-LNGI-PS-ACLSRLFLDNNELRDT---------------------------DSLIHLKNLEILSIRNNKLKS  142 (263)
T ss_dssp             CSSCCSC-CTTC-CC-SSCCEEECCSSCCSBS---------------------------GGGTTCTTCCEEECTTSCCCB
T ss_pred             CCCccCC-cCcc-cc-CcccEEEccCCccCCC---------------------------hhhcCcccccEEECCCCcCCC
Confidence            8777764 2222 22 6666666666665532                           124455556666666665553


Q ss_pred             cCCccccCCCCCcEEeCCCCcccccCCcCCcCCCCCCEEeCCCCcccc
Q 046712          489 EIPTTLGGCTSLEYLGMQDNSFTISIPSTLSSLKSITELDLSRNNLSG  536 (566)
Q Consensus       489 ~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~  536 (566)
                      . + .+..+++|++|++++|.+++.  ..+..+++|+.|++++|++..
T Consensus       143 ~-~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~  186 (263)
T 1xeu_A          143 I-V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVN  186 (263)
T ss_dssp             C-G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEEC
T ss_pred             C-h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccC
Confidence            2 2 355555666666666655533  445555566666666665553

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.68  E-value=2.8e-16  Score=151.32  Aligned_cols=264  Identities=12%  Similarity=0.062  Sum_probs=187.3

Q ss_pred             CCCCcEEECCCCccCCcCCCChhhhhhccC-CCCCCEEEccCCeee--eecchhHhhhccCCcEEEccCCCCCCCcchhh
Q 046712          273 LQNLSRLNLGENNLGTGTTNDLDFITLLTN-CTKLEVLDLHSNRFG--GVLPFSLANLSTTMTEIAIGSNQISDTIPDVI  349 (566)
Q Consensus       273 ~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~-~~~L~~L~l~~~~~~--~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~  349 (566)
                      ++++++|.++++- .   ..++   ..+.. +++|+.|++++|++.  ......+    +.+..+.+..+.+   ....|
T Consensus        24 ~~~l~~L~l~g~i-~---~~~~---~~l~~~l~~L~~LdLs~n~i~~~~~~~~~~----~~~~~~~~~~~~I---~~~aF   89 (329)
T 3sb4_A           24 ANSITHLTLTGKL-N---AEDF---RHLRDEFPSLKVLDISNAEIKMYSGKAGTY----PNGKFYIYMANFV---PAYAF   89 (329)
T ss_dssp             HHHCSEEEEEEEE-C---HHHH---HHHHHSCTTCCEEEEEEEEECCEEESSSSS----GGGCCEEECTTEE---CTTTT
T ss_pred             hCceeEEEEeccc-c---HHHH---HHHHHhhccCeEEecCcceeEEecCccccc----ccccccccccccc---CHHHh
Confidence            4678888887641 1   1111   22333 789999999999987  2222111    2234445555533   33467


Q ss_pred             hc--------cCCCCeecccCCcccccccccccCCCCCCEEEccCCcccccCCccccCCCCCCeEeccCccc----cccC
Q 046712          350 AN--------LVNLNALGVESNQLAGTIPLAIGELKSIQILFLNENFLRGTIPSSLGNLTLLTQLILEVNNL----QGKI  417 (566)
Q Consensus       350 ~~--------l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l----~~~~  417 (566)
                      ..        +++|+++++.+ .++.+...+|.+|++|+++++++|.+....+..|..+.++..+.......    ....
T Consensus        90 ~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~  168 (329)
T 3sb4_A           90 SNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWE  168 (329)
T ss_dssp             EEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTT
T ss_pred             cccccccccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccc
Confidence            77        99999999999 88878888999999999999999998877778898888888777766322    2222


Q ss_pred             CCCCcCCCCCc-EEEccCCc------------------------ceeccchhhhhhcccceEEEccCCcccccCCcCccC
Q 046712          418 PPSNGNCQNLI-LLTTRKNK------------------------LSGIVPRQLLRIITLSVLLDLSDNLLSGHFPTKVGN  472 (566)
Q Consensus       418 ~~~~~~~~~L~-~L~l~~~~------------------------~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~  472 (566)
                      ...|..|..|+ .+.+....                        +.......+....+.++.+++++|.+......+|.+
T Consensus       169 ~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~  248 (329)
T 3sb4_A          169 HFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQ  248 (329)
T ss_dssp             TSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTT
T ss_pred             ccccccccccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhC
Confidence            34455666666 33332211                        000111112222455689999999898888888999


Q ss_pred             CCCCCEEeCccccccccCCccccCCCCCc-EEeCCCCcccccCCcCCcCCCCCCEEeCCCCccccccCccccccccCcee
Q 046712          473 LKNLVSLDISSNMFSGEIPTTLGGCTSLE-YLGMQDNSFTISIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLLFL  551 (566)
Q Consensus       473 ~~~L~~L~ls~~~l~~~~~~~~~~~~~L~-~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L  551 (566)
                      +++|++|++.+| +....+.+|.+|++|+ .+++.+ .++.+.+.+|.+|++|+.+++++|.+....+..|..+++|+.+
T Consensus       249 ~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~l  326 (329)
T 3sb4_A          249 KKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLI  326 (329)
T ss_dssp             CTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEE
T ss_pred             CCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhh
Confidence            999999999987 7766777899999999 999988 7776777899999999999999999987777899999999988


Q ss_pred             ec
Q 046712          552 NM  553 (566)
Q Consensus       552 ~l  553 (566)
                      +.
T Consensus       327 y~  328 (329)
T 3sb4_A          327 YK  328 (329)
T ss_dssp             EC
T ss_pred             cc
Confidence            64

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.68  E-value=4.3e-15  Score=146.84  Aligned_cols=335  Identities=10%  Similarity=0.034  Sum_probs=203.8

Q ss_pred             ccccccCccCcCCCCCCEEecCCCcccccCCcccCCCCCCCEEeCCCCcCCCcCccccccCCCCcEEEcCCCcCCCCcch
Q 046712           45 SVGGVLSPFVGNLNFLRSINLPNNSFRGKIPHEVGNLFRLQNLTLTNNYFLGKILTDLSHCSNLMKFEASNNKLEGEIPV  124 (566)
Q Consensus        45 ~i~~~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~  124 (566)
                      .|+.+-..+|.++++|+.+.+..+ ++.....+|.++.+|+.+++.++ ++.....+|.++++|+.+.+..+ +......
T Consensus        58 ~VtsIg~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~  134 (394)
T 4fs7_A           58 DVVSIGYAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVE  134 (394)
T ss_dssp             EEEEECTTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTT
T ss_pred             eEeEhHHHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecce
Confidence            456666778889999999998754 66556778889999999999765 55566677888888888777654 3334455


Q ss_pred             hccCCCCCCEEecccccCCCCCCccccCCCCCCEEEccCCcCcccCCcccccCCcccEeecccccceecCC-cccCcccC
Q 046712          125 KISNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVAYNQFSGMIP-PIYNISSL  203 (566)
Q Consensus       125 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~l~~~~~L  203 (566)
                      +|..+..++.........  ....+|.++.+|+.+.+.++.. .....+|..+.+|+.+.+..+ +..... .+..+..|
T Consensus       135 aF~~~~~~~~~~~~~~~~--i~~~aF~~c~~L~~i~l~~~~~-~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L  210 (394)
T 4fs7_A          135 AFKGCDFKEITIPEGVTV--IGDEAFATCESLEYVSLPDSME-TLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILL  210 (394)
T ss_dssp             TTTTCCCSEEECCTTCCE--ECTTTTTTCTTCCEEECCTTCC-EECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTC
T ss_pred             eeecccccccccCccccc--cchhhhcccCCCcEEecCCccc-eeccccccCCCCceEEEcCCC-ceEeCchhhcccccc
Confidence            666665444333322221  3356688888888888876543 255567778888888877655 333333 55566677


Q ss_pred             ceEecccccccccCCCCCCCCCCCCcEEEcccccccccCcccccccCCCCeeecccccccccccccccCCCCCcEEECCC
Q 046712          204 QYIFIHTNRFHGSVPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINRNLFSGKVSINFSRLQNLSRLNLGE  283 (566)
Q Consensus       204 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~  283 (566)
                      +.+.+..+...  +....+ ....|+.+.+... ++.....++..+..++.+.+..+.. ......|..+..++.+....
T Consensus       211 ~~i~~~~~~~~--i~~~~~-~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~-~i~~~~F~~~~~l~~~~~~~  285 (394)
T 4fs7_A          211 ENMEFPNSLYY--LGDFAL-SKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKL-RIGGSLFYNCSGLKKVIYGS  285 (394)
T ss_dssp             CBCCCCTTCCE--ECTTTT-TTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTC-EECSCTTTTCTTCCEEEECS
T ss_pred             ceeecCCCceE--eehhhc-ccCCCceEEECCC-ceecccccccccccceeEEcCCCcc-eeeccccccccccceeccCc
Confidence            76666544322  111112 3456666666443 2223444556666666666654432 23344455555555555544


Q ss_pred             CccCCcCCCChhhhhhccCCCCCCEEEccCCeeeeecchhHhhhccCCcEEEccCCCCCCCcchhhhccCCCCeecccCC
Q 046712          284 NNLGTGTTNDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQISDTIPDVIANLVNLNALGVESN  363 (566)
Q Consensus       284 ~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~  363 (566)
                      ..+..         ..+..+.+|+.+.+..+                          +......+|.++.+|+.+++.++
T Consensus       286 ~~i~~---------~~F~~~~~L~~i~l~~~--------------------------i~~I~~~aF~~c~~L~~i~lp~~  330 (394)
T 4fs7_A          286 VIVPE---------KTFYGCSSLTEVKLLDS--------------------------VKFIGEEAFESCTSLVSIDLPYL  330 (394)
T ss_dssp             SEECT---------TTTTTCTTCCEEEECTT--------------------------CCEECTTTTTTCTTCCEECCCTT
T ss_pred             eeecc---------ccccccccccccccccc--------------------------cceechhhhcCCCCCCEEEeCCc
Confidence            32211         23445555555554332                          22223446777788888888644


Q ss_pred             cccccccccccCCCCCCEEEccCCcccccCCccccCCCCCCeEeccCccccccCCCCCcCCCCCcEE
Q 046712          364 QLAGTIPLAIGELKSIQILFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSNGNCQNLILL  430 (566)
Q Consensus       364 ~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L  430 (566)
                       ++.+...+|.+|.+|+.+.+..+ ++.....+|.+|++|+.+++..+- . .+..+|.+|++|+.+
T Consensus       331 -v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~~-~-~~~~~F~~c~~L~~I  393 (394)
T 4fs7_A          331 -VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKRL-E-QYRYDFEDTTKFKWI  393 (394)
T ss_dssp             -CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGGG-G-GGGGGBCTTCEEEEE
T ss_pred             -ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCCC-E-EhhheecCCCCCcEE
Confidence             55456677888888888888766 544556678888888888876542 2 223457777777664

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.66  E-value=4.4e-16  Score=144.39  Aligned_cols=165  Identities=18%  Similarity=0.252  Sum_probs=102.0

Q ss_pred             EEEEEcCCCccccccCccCcCCCCCCEEecCCCcccccCCcccCCCCCCCEEeCCCCcCCCcCccccccCCCCcEEEcCC
Q 046712           36 VTGLDLRHQSVGGVLSPFVGNLNFLRSINLPNNSFRGKIPHEVGNLFRLQNLTLTNNYFLGKILTDLSHCSNLMKFEASN  115 (566)
Q Consensus        36 ~~~l~l~~~~i~~~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~  115 (566)
                      +..++++++.+++..  .+..+++|++|++++|.++ .++ .+..+++|++|++++|.+++..+  +..+++|++|++++
T Consensus        21 l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~   94 (263)
T 1xeu_A           21 AVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNR   94 (263)
T ss_dssp             HHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCS
T ss_pred             HHHHHhcCCCccccc--chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCC
Confidence            344556666666443  4667777777777777776 344 56677777777777777765443  66777777777777


Q ss_pred             CcCCCCcchhccCCCCCCEEecccccCCCCCCccccCCCCCCEEEccCCcCcccCCcccccCCcccEeecccccceecCC
Q 046712          116 NKLEGEIPVKISNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVAYNQFSGMIP  195 (566)
Q Consensus       116 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~  195 (566)
                      |++++ ++. +.. ++|++|++++|.+.+ + ..+..+++|++|++++|.+++.  ..+..+++|+.|++++|.+.+. .
T Consensus        95 N~l~~-l~~-~~~-~~L~~L~L~~N~l~~-~-~~l~~l~~L~~L~Ls~N~i~~~--~~l~~l~~L~~L~L~~N~i~~~-~  166 (263)
T 1xeu_A           95 NRLKN-LNG-IPS-ACLSRLFLDNNELRD-T-DSLIHLKNLEILSIRNNKLKSI--VMLGFLSKLEVLDLHGNEITNT-G  166 (263)
T ss_dssp             SCCSC-CTT-CCC-SSCCEEECCSSCCSB-S-GGGTTCTTCCEEECTTSCCCBC--GGGGGCTTCCEEECTTSCCCBC-T
T ss_pred             CccCC-cCc-ccc-CcccEEEccCCccCC-C-hhhcCcccccEEECCCCcCCCC--hHHccCCCCCEEECCCCcCcch-H
Confidence            77763 332 223 677777777777663 2 3466777777777777776632  2566666677776666666544 3


Q ss_pred             cccCcccCceEeccccccc
Q 046712          196 PIYNISSLQYIFIHTNRFH  214 (566)
Q Consensus       196 ~l~~~~~L~~L~l~~~~~~  214 (566)
                      .+..+++|+.|++++|.+.
T Consensus       167 ~l~~l~~L~~L~l~~N~~~  185 (263)
T 1xeu_A          167 GLTRLKKVNWIDLTGQKCV  185 (263)
T ss_dssp             TSTTCCCCCEEEEEEEEEE
T ss_pred             HhccCCCCCEEeCCCCccc
Confidence            4444445555555544443

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.65  E-value=1.7e-16  Score=152.82  Aligned_cols=205  Identities=13%  Similarity=0.090  Sum_probs=97.9

Q ss_pred             CCCCcEEEcccccccccCcccccccCCCCeeecccccccccccccccCCCCCcEEECCCCccCCcCCCChhhhhhccCCC
Q 046712          225 LPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINRNLFSGKVSINFSRLQNLSRLNLGENNLGTGTTNDLDFITLLTNCT  304 (566)
Q Consensus       225 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~  304 (566)
                      +++|+++++.. .++.....+|.+|++|+.+++.++.+......+|.++.++..+............ .+ ....+..+.
T Consensus       100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~-~i-~~~~f~~~~  176 (329)
T 3sb4_A          100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKN-RW-EHFAFIEGE  176 (329)
T ss_dssp             CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTST-TT-TTSCEEESC
T ss_pred             cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccc-cc-ccccccccc
Confidence            66666666666 5555556666666667777766666665566666666555555544321100000 00 002234445


Q ss_pred             CCC-EEEccCCeeeeecchhHhh---hccCCcEEEccCCCCCCCcchhhhccCCCCeecccCCcccccccccccCCCCCC
Q 046712          305 KLE-VLDLHSNRFGGVLPFSLAN---LSTTMTEIAIGSNQISDTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSIQ  380 (566)
Q Consensus       305 ~L~-~L~l~~~~~~~~~~~~~~~---~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~  380 (566)
                      .|+ .+.+....   ..+..+..   ....+..+.+.+.-...........+++|+++++++|.++.+...+|.+|++|+
T Consensus       177 ~L~~~i~~~~~~---~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~  253 (329)
T 3sb4_A          177 PLETTIQVGAMG---KLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLL  253 (329)
T ss_dssp             CCEEEEEECTTC---CHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCC
T ss_pred             ccceeEEecCCC---cHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCC
Confidence            555 33333221   11111111   123444444433311100111112355666666666655555555566666666


Q ss_pred             EEEccCCcccccCCccccCCCCCC-eEeccCccccccCCCCCcCCCCCcEEEccCCcc
Q 046712          381 ILFLNENFLRGTIPSSLGNLTLLT-QLILEVNNLQGKIPPSNGNCQNLILLTTRKNKL  437 (566)
Q Consensus       381 ~L~l~~n~~~~~~~~~~~~~~~L~-~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~  437 (566)
                      ++++.+| +......+|.++++|+ .+++.+ .+....+.+|.+|++|+.+++..+.+
T Consensus       254 ~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i  309 (329)
T 3sb4_A          254 KIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKI  309 (329)
T ss_dssp             EEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCC
T ss_pred             EEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCcc
Confidence            6666655 4434445566666666 666655 44444445555555555555444443

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.65  E-value=1.1e-18  Score=179.42  Aligned_cols=190  Identities=19%  Similarity=0.166  Sum_probs=112.9

Q ss_pred             hccCCCCeecccCCcccccccccccCCCCCCEEEccCCc-------------ccccCCccccCCCCCCeEe-ccCccccc
Q 046712          350 ANLVNLNALGVESNQLAGTIPLAIGELKSIQILFLNENF-------------LRGTIPSSLGNLTLLTQLI-LEVNNLQG  415 (566)
Q Consensus       350 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~-------------~~~~~~~~~~~~~~L~~L~-l~~~~l~~  415 (566)
                      ..++.|+.|++++|.+. .+|..++.+++|+.|++++|.             ..+..+..+..+++|+.|+ ++.+.+. 
T Consensus       346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~-  423 (567)
T 1dce_A          346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD-  423 (567)
T ss_dssp             STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH-
T ss_pred             ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc-
Confidence            34667777777777776 556667777777777776554             2233444555555666665 3433221 


Q ss_pred             cCCCCCcCCCCCcEEEccCCcceeccchhhhhhcccceEEEccCCcccccCCcCccCCCCCCEEeCccccccccCCcccc
Q 046712          416 KIPPSNGNCQNLILLTTRKNKLSGIVPRQLLRIITLSVLLDLSDNLLSGHFPTKVGNLKNLVSLDISSNMFSGEIPTTLG  495 (566)
Q Consensus       416 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~l~~~~~~~~~  495 (566)
                                .|+.+.+.+|.+....+       ..++.|++++|.+.+ .+. +..+++|+.|++++|.+. .+|..|.
T Consensus       424 ----------~L~~l~l~~n~i~~l~~-------~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~  483 (567)
T 1dce_A          424 ----------DLRSKFLLENSVLKMEY-------ADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALA  483 (567)
T ss_dssp             ----------HHHHHHHHHHHHHHHHH-------TTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGG
T ss_pred             ----------hhhhhhhhcccccccCc-------cCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhh
Confidence                      22222233333221110       113566666666664 333 666667777777777666 5666666


Q ss_pred             CCCCCcEEeCCCCcccccCCcCCcCCCCCCEEeCCCCcccccc-CccccccccCceeecccCcCcccCC
Q 046712          496 GCTSLEYLGMQDNSFTISIPSTLSSLKSITELDLSRNNLSGHI-PQYLENLSFLLFLNMSYNHFEGKVP  563 (566)
Q Consensus       496 ~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~-~~~l~~l~~L~~L~l~~n~~~~~~p  563 (566)
                      .+++|++|+|++|.+++ +| .+..+++|+.|+|++|.+++.. |..+..+++|+.|++++|++++..|
T Consensus       484 ~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~  550 (567)
T 1dce_A          484 ALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG  550 (567)
T ss_dssp             GCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSS
T ss_pred             cCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCcc
Confidence            67777777777776663 44 6666777777777777776554 6666777777777777777766554

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.64  E-value=1.7e-14  Score=142.55  Aligned_cols=317  Identities=11%  Similarity=0.045  Sum_probs=182.1

Q ss_pred             ccccCCcccCCCCCCCEEeCCCCcCCCcCccccccCCCCcEEEcCCCcCCCCcchhccCCCCCCEEecccccCCCCCCcc
Q 046712           70 FRGKIPHEVGNLFRLQNLTLTNNYFLGKILTDLSHCSNLMKFEASNNKLEGEIPVKISNLLMLQILNIAENHLKGQLPAS  149 (566)
Q Consensus        70 l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~  149 (566)
                      ++.....||.++.+|+.+.+..+ ++.....+|.+|++|+.+++..+ ++.+...++..+..|+.+.+..+ +......+
T Consensus        59 VtsIg~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~a  135 (394)
T 4fs7_A           59 VVSIGYAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEA  135 (394)
T ss_dssp             EEEECTTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTT
T ss_pred             EeEhHHHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeeccee
Confidence            44445667888888888888654 56566677888888888888754 44355566777777777766543 22233445


Q ss_pred             ccCCCCCCEEEccCCcCcccCCcccccCCcccEeecccccceecCC-cccCcccCceEecccccccccCCCCCCCCCCCC
Q 046712          150 IGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVAYNQFSGMIP-PIYNISSLQYIFIHTNRFHGSVPLDNGVNLPNL  228 (566)
Q Consensus       150 ~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L  228 (566)
                      |..+..++.......  ......+|..+++|+.+.+..+. ..... .+..+.+|+.+.+..+                 
T Consensus       136 F~~~~~~~~~~~~~~--~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-----------------  195 (394)
T 4fs7_A          136 FKGCDFKEITIPEGV--TVIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-----------------  195 (394)
T ss_dssp             TTTCCCSEEECCTTC--CEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-----------------
T ss_pred             eecccccccccCccc--cccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-----------------
Confidence            555543332222221  11334456666666666664432 22222 3444455555544333                 


Q ss_pred             cEEEcccccccccCcccccccCCCCeeecccccccccccccccCCCCCcEEECCCCccCCcCCCChhhhhhccCCCCCCE
Q 046712          229 RYFSISGNNLTGSLQDSLSNATNLQGLEINRNLFSGKVSINFSRLQNLSRLNLGENNLGTGTTNDLDFITLLTNCTKLEV  308 (566)
Q Consensus       229 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~  308 (566)
                               ++.....++..+..|+.+.+..+... . .........|+.+.+... +.....      ..+..+..++.
T Consensus       196 ---------~~~I~~~~F~~~~~L~~i~~~~~~~~-i-~~~~~~~~~l~~i~ip~~-~~~i~~------~~f~~~~~l~~  257 (394)
T 4fs7_A          196 ---------LKIIRDYCFAECILLENMEFPNSLYY-L-GDFALSKTGVKNIIIPDS-FTELGK------SVFYGCTDLES  257 (394)
T ss_dssp             ---------CCEECTTTTTTCTTCCBCCCCTTCCE-E-CTTTTTTCCCCEEEECTT-CCEECS------STTTTCSSCCE
T ss_pred             ---------ceEeCchhhccccccceeecCCCceE-e-ehhhcccCCCceEEECCC-ceeccc------cccccccccee
Confidence                     22233334444444444444332211 1 111222234444444322 111111      23444555555


Q ss_pred             EEccCCeeeeecchhHhhhccCCcEEEccCCCCCCCcchhhhccCCCCeecccCCcccccccccccCCCCCCEEEccCCc
Q 046712          309 LDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQISDTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSIQILFLNENF  388 (566)
Q Consensus       309 L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~  388 (566)
                      +.+..+... .....+. ....++.+......+   ....+..+.+|+.+.+.++ ++.+...+|.+|.+|+.+++.++ 
T Consensus       258 ~~~~~~~~~-i~~~~F~-~~~~l~~~~~~~~~i---~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-  330 (394)
T 4fs7_A          258 ISIQNNKLR-IGGSLFY-NCSGLKKVIYGSVIV---PEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-  330 (394)
T ss_dssp             EEECCTTCE-ECSCTTT-TCTTCCEEEECSSEE---CTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-
T ss_pred             EEcCCCcce-eeccccc-cccccceeccCceee---ccccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-
Confidence            555443221 2222221 124444444443322   2235778899999999765 55567788999999999999865 


Q ss_pred             ccccCCccccCCCCCCeEeccCccccccCCCCCcCCCCCcEEEccCC
Q 046712          389 LRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSNGNCQNLILLTTRKN  435 (566)
Q Consensus       389 ~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~  435 (566)
                      ++.....+|.++.+|+.+++..+ +......+|.+|++|+.+++..+
T Consensus       331 v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~  376 (394)
T 4fs7_A          331 VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR  376 (394)
T ss_dssp             CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG
T ss_pred             ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC
Confidence            55466789999999999999876 66566788999999999999754

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.63  E-value=1.7e-15  Score=133.32  Aligned_cols=129  Identities=23%  Similarity=0.295  Sum_probs=74.1

Q ss_pred             CeEeccCccccccCCCCCcCCCCCcEEEccCCcceeccchh-hhhhcccceEEEccCCcccccCCcCccCCCCCCEEeCc
Q 046712          404 TQLILEVNNLQGKIPPSNGNCQNLILLTTRKNKLSGIVPRQ-LLRIITLSVLLDLSDNLLSGHFPTKVGNLKNLVSLDIS  482 (566)
Q Consensus       404 ~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls  482 (566)
                      +.++++++.+. .+|..+.  +++++|++++|.+.+..+.. +..+.. ++.|++++|.+.+..+..|..+++|++|+++
T Consensus        11 ~~l~~s~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls   86 (192)
T 1w8a_A           11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPH-LVKLELKRNQLTGIEPNAFEGASHIQELQLG   86 (192)
T ss_dssp             TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTT-CCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             CEEEcCCCCcC-cCccCCC--CCCCEEECCCCcCCccCCccccccCCC-CCEEECCCCCCCCcCHhHcCCcccCCEEECC
Confidence            67778777775 4554433  36777777777666444432 223322 3555666665555555555555566666666


Q ss_pred             cccccccCCccccCCCCCcEEeCCCCcccccCCcCCcCCCCCCEEeCCCCcccc
Q 046712          483 SNMFSGEIPTTLGGCTSLEYLGMQDNSFTISIPSTLSSLKSITELDLSRNNLSG  536 (566)
Q Consensus       483 ~~~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~  536 (566)
                      +|++.+..+..|.++++|++|+|++|.+++..|+.+..+++|++|++++|++..
T Consensus        87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c  140 (192)
T 1w8a_A           87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC  140 (192)
T ss_dssp             SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred             CCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccC
Confidence            665554444455555666666666665555555555555666666666665553

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.62  E-value=4.1e-14  Score=138.95  Aligned_cols=271  Identities=11%  Similarity=0.095  Sum_probs=157.6

Q ss_pred             ccCCCCeeecccccccccccccccCCCCCcEEECCCCccCCcCCCChhhhhhccCCCCCCEEEccCCeeeeecchhHhhh
Q 046712          248 NATNLQGLEINRNLFSGKVSINFSRLQNLSRLNLGENNLGTGTTNDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANL  327 (566)
Q Consensus       248 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~  327 (566)
                      .+..++.+.+.+ .+..+...+|.++ +|+.+.+..+ +...+.      .+|.++ +|+.+.+.. .+..+...++.. 
T Consensus       111 ~~~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~------~aF~~~-~L~~i~lp~-~l~~I~~~aF~~-  178 (401)
T 4fdw_A          111 ILKGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGD------MAFFNS-TVQEIVFPS-TLEQLKEDIFYY-  178 (401)
T ss_dssp             ECSSCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-CCEECT------TTTTTC-CCCEEECCT-TCCEECSSTTTT-
T ss_pred             ecCCccEEEECC-ccCEehHhhcccC-CccEEEeCCC-ccEECH------HhcCCC-CceEEEeCC-CccEehHHHhhC-
Confidence            345666666654 3444555556654 5777776554 444433      334443 466666654 333333333332 


Q ss_pred             ccCCcEEEccCCCCCCCcchhhhccCCCCeecccCCcccccccccccCCCCCCEEEccCCcccccCCccccCCCCCCeEe
Q 046712          328 STTMTEIAIGSNQISDTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSIQILFLNENFLRGTIPSSLGNLTLLTQLI  407 (566)
Q Consensus       328 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~  407 (566)
                      .++|+.+++.++.+.......|. +.+|+.+.+..+ +..+...+|.+|++|+.+.+.++ ++.....+|.+ .+|+.+.
T Consensus       179 c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~  254 (401)
T 4fdw_A          179 CYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVK  254 (401)
T ss_dssp             CTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEE
T ss_pred             cccCCeeecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEE
Confidence            25566666655555543333343 455566655533 44344455555556666665543 23233344544 4555555


Q ss_pred             ccCccccccCCCCCcCCCCCcEEEccCCcceeccchhhhhhcccceEEEccCCcccccCCcCccCCCCCCEEeCcccccc
Q 046712          408 LEVNNLQGKIPPSNGNCQNLILLTTRKNKLSGIVPRQLLRIITLSVLLDLSDNLLSGHFPTKVGNLKNLVSLDISSNMFS  487 (566)
Q Consensus       408 l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~l~  487 (566)
                      +. +.+......+|..|++|+.+.+.++.+.                    .+........+|.+|++|+.+++.+ ++.
T Consensus       255 lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~--------------------~~~~~~I~~~aF~~c~~L~~l~l~~-~i~  312 (401)
T 4fdw_A          255 LP-NGVTNIASRAFYYCPELAEVTTYGSTFN--------------------DDPEAMIHPYCLEGCPKLARFEIPE-SIR  312 (401)
T ss_dssp             EE-TTCCEECTTTTTTCTTCCEEEEESSCCC--------------------CCTTCEECTTTTTTCTTCCEECCCT-TCC
T ss_pred             eC-CCccEEChhHhhCCCCCCEEEeCCcccc--------------------CCcccEECHHHhhCCccCCeEEeCC-ceE
Confidence            52 2333334455555555555555544332                    0111135556788888888888884 466


Q ss_pred             ccCCccccCCCCCcEEeCCCCcccccCCcCCcCCCCCCEEeCCCCccccccCccccccc-cCceeecccCcC
Q 046712          488 GEIPTTLGGCTSLEYLGMQDNSFTISIPSTLSSLKSITELDLSRNNLSGHIPQYLENLS-FLLFLNMSYNHF  558 (566)
Q Consensus       488 ~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~-~L~~L~l~~n~~  558 (566)
                      ......|.+|++|+.+.|.++ ++.+...+|.++ +|+.+++.+|......+..|..++ .++.|++..+.+
T Consensus       313 ~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~  382 (401)
T 4fdw_A          313 ILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESV  382 (401)
T ss_dssp             EECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGH
T ss_pred             EEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHH
Confidence            566678888888998888665 555667788888 899999988888766667777774 677887766643

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.62  E-value=1.2e-15  Score=131.39  Aligned_cols=133  Identities=22%  Similarity=0.246  Sum_probs=66.3

Q ss_pred             CCCCEEecCCCccc-ccCCcccCCCCCCCEEeCCCCcCCCcCccccccCCCCcEEEcCCCcCCCCcchhccCCCCCCEEe
Q 046712           58 NFLRSINLPNNSFR-GKIPHEVGNLFRLQNLTLTNNYFLGKILTDLSHCSNLMKFEASNNKLEGEIPVKISNLLMLQILN  136 (566)
Q Consensus        58 ~~L~~L~ls~~~l~-~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~  136 (566)
                      ++|++|++++|.++ +.+|..+..+++|++|++++|.++..  ..+..+++|++|++++|.+.+.+|..+..+++|++|+
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  101 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN  101 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred             ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence            44555555555554 33444445555555555555554433  4444555555555555555543444444455555555


Q ss_pred             cccccCCCC-CCccccCCCCCCEEEccCCcCcccCC---cccccCCcccEeeccccccee
Q 046712          137 IAENHLKGQ-LPASIGNLSALQEIDVRGNRLGGRIP---STISHVRNLISFNVAYNQFSG  192 (566)
Q Consensus       137 l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~i~~~~~---~~l~~l~~L~~L~l~~~~~~~  192 (566)
                      +++|.+.+. .+..+..+++|++|++++|.+++..+   ..+..+++|+.|++++|....
T Consensus       102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~  161 (168)
T 2ell_A          102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQE  161 (168)
T ss_dssp             CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCB
T ss_pred             ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhh
Confidence            555555421 11445555555555555555553222   245555555555555555443

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.62  E-value=4.5e-14  Score=138.64  Aligned_cols=265  Identities=11%  Similarity=0.079  Sum_probs=158.9

Q ss_pred             CCCCCCEEecCCCcccccCCcccCCCCCCCEEeCCCCcCCCcCccccccCCCCcEEEcCCCcCCCCcchhccCCCCCCEE
Q 046712           56 NLNFLRSINLPNNSFRGKIPHEVGNLFRLQNLTLTNNYFLGKILTDLSHCSNLMKFEASNNKLEGEIPVKISNLLMLQIL  135 (566)
Q Consensus        56 ~l~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L  135 (566)
                      -+..++.+.+.+. ++.....+|.++ +|+.+.+..+ ++.....+|.++ +|+.+.+.. .+..+...+|..|++|+.+
T Consensus       111 ~~~~l~~i~ip~~-i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l  185 (401)
T 4fdw_A          111 ILKGYNEIILPNS-VKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKA  185 (401)
T ss_dssp             ECSSCSEEECCTT-CCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEE
T ss_pred             ecCCccEEEECCc-cCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCee
Confidence            3466666666543 443445566664 5777777655 555555566664 577777765 4444555566777777777


Q ss_pred             ecccccCCCCCCccccCCCCCCEEEccCCcCcccCCcccccCCcccEeecccccceecCCcccCcccCceEecccccccc
Q 046712          136 NIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVAYNQFSGMIPPIYNISSLQYIFIHTNRFHG  215 (566)
Q Consensus       136 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~  215 (566)
                      +++.+.+...-..+|. +.+|+.+.+..+ +......+|..+++|+.+.+..+ +..+....+....|+.+.+..+ +. 
T Consensus       186 ~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~~~L~~i~lp~~-i~-  260 (401)
T 4fdw_A          186 DLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRESGITTVKLPNG-VT-  260 (401)
T ss_dssp             ECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTTCCCSEEEEETT-CC-
T ss_pred             ecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCccccccccCCccEEEeCCC-cc-
Confidence            7777666633333333 567777777644 44455566777777777777653 3334442222256777776432 32 


Q ss_pred             cCCCCCCCCCCCCcEEEccccccc-----ccCcccccccCCCCeeecccccccccccccccCCCCCcEEECCCCccCCcC
Q 046712          216 SVPLDNGVNLPNLRYFSISGNNLT-----GSLQDSLSNATNLQGLEINRNLFSGKVSINFSRLQNLSRLNLGENNLGTGT  290 (566)
Q Consensus       216 ~~~~~~~~~~~~L~~L~l~~~~~~-----~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~  290 (566)
                      .++...+..+++|+.+.+.++.+.     .....+|.+|++|+.+.+.+ .+......+|.++.+|+.+.+..+ +....
T Consensus       261 ~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~  338 (401)
T 4fdw_A          261 NIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQIN  338 (401)
T ss_dssp             EECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEEC
T ss_pred             EEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEc
Confidence            445555556777777777665443     34556677777777777763 355566666777777777777543 44443


Q ss_pred             CCChhhhhhccCCCCCCEEEccCCeeeeecchhHhhhccCCcEEEccCC
Q 046712          291 TNDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSN  339 (566)
Q Consensus       291 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~  339 (566)
                      .      .+|.++ +|+.+.+.++.........+...+..++.+.+-.+
T Consensus       339 ~------~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~  380 (401)
T 4fdw_A          339 F------SAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAE  380 (401)
T ss_dssp             T------TSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGG
T ss_pred             H------HhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHH
Confidence            3      456677 77777777776655555555554456666666554

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.62  E-value=1.8e-15  Score=130.20  Aligned_cols=137  Identities=19%  Similarity=0.193  Sum_probs=108.5

Q ss_pred             CcEEEEEcCCCccc-cccCccCcCCCCCCEEecCCCcccccCCcccCCCCCCCEEeCCCCcCCCcCccccccCCCCcEEE
Q 046712           34 QRVTGLDLRHQSVG-GVLSPFVGNLNFLRSINLPNNSFRGKIPHEVGNLFRLQNLTLTNNYFLGKILTDLSHCSNLMKFE  112 (566)
Q Consensus        34 ~~~~~l~l~~~~i~-~~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~  112 (566)
                      +++++|++++|.++ +.+|..+..+++|++|++++|.+++.  ..+..+++|++|++++|.+.+..+..+..+++|++|+
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  101 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN  101 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred             ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence            67888899988887 56677788888999999998888744  6788888899999998888776676677788899999


Q ss_pred             cCCCcCCCCc-chhccCCCCCCEEecccccCCCCCC---ccccCCCCCCEEEccCCcCcccCCcc
Q 046712          113 ASNNKLEGEI-PVKISNLLMLQILNIAENHLKGQLP---ASIGNLSALQEIDVRGNRLGGRIPST  173 (566)
Q Consensus       113 l~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~---~~~~~l~~L~~L~l~~~~i~~~~~~~  173 (566)
                      +++|.+++.. +..+..+++|++|++++|.+.+..+   ..+..+++|++|++++|.+. ..|++
T Consensus       102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~~  165 (168)
T 2ell_A          102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ-EAPDS  165 (168)
T ss_dssp             CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC-BCCSS
T ss_pred             ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh-hcccc
Confidence            9988887532 2678888889999999888874433   37788889999998888876 44443

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.61  E-value=2.5e-15  Score=126.47  Aligned_cols=128  Identities=19%  Similarity=0.216  Sum_probs=85.6

Q ss_pred             CCCCCEEecCCCccc-ccCCcccCCCCCCCEEeCCCCcCCCcCccccccCCCCcEEEcCCCcCCCCcchhccCCCCCCEE
Q 046712           57 LNFLRSINLPNNSFR-GKIPHEVGNLFRLQNLTLTNNYFLGKILTDLSHCSNLMKFEASNNKLEGEIPVKISNLLMLQIL  135 (566)
Q Consensus        57 l~~L~~L~ls~~~l~-~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L  135 (566)
                      .++|++|++++|.++ +.+|..+..+++|++|++++|.+++.  ..+..+++|++|++++|.+++.+|..+..+++|++|
T Consensus        16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L   93 (149)
T 2je0_A           16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL   93 (149)
T ss_dssp             GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred             CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence            356777777777766 45666667777777777777766544  556667777777777777765566666667777777


Q ss_pred             ecccccCCCC-CCccccCCCCCCEEEccCCcCcccCC---cccccCCcccEeecc
Q 046712          136 NIAENHLKGQ-LPASIGNLSALQEIDVRGNRLGGRIP---STISHVRNLISFNVA  186 (566)
Q Consensus       136 ~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~i~~~~~---~~l~~l~~L~~L~l~  186 (566)
                      ++++|.+.+. .+..+..+++|++|++++|.+++..+   ..+..+++|+.|+++
T Consensus        94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence            7777777632 23566777777777777777764433   356677777777664

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.60  E-value=1.3e-17  Score=171.35  Aligned_cols=121  Identities=20%  Similarity=0.171  Sum_probs=80.0

Q ss_pred             CCeEeccCccccccCCCCCcCCCCCcEEEccCCcceeccchhhhhhcccceEEEccCCcccccCCcCccCCCCCCEEeCc
Q 046712          403 LTQLILEVNNLQGKIPPSNGNCQNLILLTTRKNKLSGIVPRQLLRIITLSVLLDLSDNLLSGHFPTKVGNLKNLVSLDIS  482 (566)
Q Consensus       403 L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls  482 (566)
                      |+.|++++|.+++ +|. +..+++|+.|++++|.+                         . ..|..+..+++|+.|+++
T Consensus       443 L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l-------------------------~-~lp~~~~~l~~L~~L~Ls  494 (567)
T 1dce_A          443 VRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRL-------------------------R-ALPPALAALRCLEVLQAS  494 (567)
T ss_dssp             CSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCC-------------------------C-CCCGGGGGCTTCCEEECC
T ss_pred             ceEEEecCCCCCC-CcC-ccccccCcEeecCcccc-------------------------c-ccchhhhcCCCCCEEECC
Confidence            5555555555553 333 44555555555444444                         3 344456677788888888


Q ss_pred             cccccccCCccccCCCCCcEEeCCCCcccccC-CcCCcCCCCCCEEeCCCCccccccCc---cccccccCceeec
Q 046712          483 SNMFSGEIPTTLGGCTSLEYLGMQDNSFTISI-PSTLSSLKSITELDLSRNNLSGHIPQ---YLENLSFLLFLNM  553 (566)
Q Consensus       483 ~~~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~-~~~l~~l~~L~~L~l~~n~~~~~~~~---~l~~l~~L~~L~l  553 (566)
                      +|.+++ +| .+..+++|++|+|++|.+++.. |..+..+++|+.|++++|++++.+|.   .+..+++|+.|++
T Consensus       495 ~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          495 DNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT  567 (567)
T ss_dssp             SSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred             CCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence            888874 55 6777888888888888887654 77888888888888888888765442   2344677877764

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.60  E-value=8.1e-15  Score=128.93  Aligned_cols=127  Identities=18%  Similarity=0.250  Sum_probs=82.6

Q ss_pred             EEEcCCCccccccCccCcCCCCCCEEecCCCcccccCCc-ccCCCCCCCEEeCCCCcCCCcCccccccCCCCcEEEcCCC
Q 046712           38 GLDLRHQSVGGVLSPFVGNLNFLRSINLPNNSFRGKIPH-EVGNLFRLQNLTLTNNYFLGKILTDLSHCSNLMKFEASNN  116 (566)
Q Consensus        38 ~l~l~~~~i~~~~~~~~~~l~~L~~L~ls~~~l~~~~~~-~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~  116 (566)
                      ++++++++++. +|..+.  ++|++|++++|.+++..+. .|..+++|++|++++|.+++..+..|.++++|++|++++|
T Consensus        12 ~l~~s~~~l~~-ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N   88 (192)
T 1w8a_A           12 TVDCTGRGLKE-IPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN   88 (192)
T ss_dssp             EEECTTSCCSS-CCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred             EEEcCCCCcCc-CccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence            45556666653 333332  2677777777777644443 3667777777777777777666666777777777777777


Q ss_pred             cCCCCcchhccCCCCCCEEecccccCCCCCCccccCCCCCCEEEccCCcCc
Q 046712          117 KLEGEIPVKISNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLG  167 (566)
Q Consensus       117 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~  167 (566)
                      ++++..+..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+.
T Consensus        89 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  139 (192)
T 1w8a_A           89 KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             CCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred             cCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence            776555555666677777777777766656666666666777776666665

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.60  E-value=3.3e-16  Score=166.19  Aligned_cols=202  Identities=18%  Similarity=0.190  Sum_probs=110.8

Q ss_pred             CCCcccccccCCCCCcEEEEEcCCCccccccCccCcCCCCCCEEe-----cCCCcccccCCcccCCCCCCCEEeCCCCcC
Q 046712           20 NLCQWTGVTCGHRRQRVTGLDLRHQSVGGVLSPFVGNLNFLRSIN-----LPNNSFRGKIPHEVGNLFRLQNLTLTNNYF   94 (566)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~l~l~~~~i~~~~~~~~~~l~~L~~L~-----ls~~~l~~~~~~~~~~l~~L~~L~l~~~~l   94 (566)
                      ....|.+..++.  +++..+++.++.+... +..+.....|+.+.     ++.|.+. ..+..+..++.|+.|+|++|.+
T Consensus       161 ~~~~~~~~~~s~--~~~~~l~L~~n~~~~~-~~~~l~~l~Ls~~~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l  236 (727)
T 4b8c_D          161 PSGTATNSAVST--PLTPKIELFANGKDEA-NQALLQHKKLSQYSIDEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQI  236 (727)
T ss_dssp             -----------------------------------------------------------------CCCCCCEEECTTSCC
T ss_pred             ccccCCCceecC--CccceEEeeCCCCCcc-hhhHhhcCccCcccccCcccccccee-cChhhhccCCCCcEEECCCCCC
Confidence            446787766653  7789999998888754 33333333333333     2333333 4577788999999999999988


Q ss_pred             CCcCccccccCCCCcEEEcCCCcCCCCcchhccCCCCCCEEecccccCCCCCCccccCCCCCCEEEccCCcCcccCCccc
Q 046712           95 LGKILTDLSHCSNLMKFEASNNKLEGEIPVKISNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTI  174 (566)
Q Consensus        95 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l  174 (566)
                      . ..+..+..+++|++|++++|.++ .+|..+.++++|++|+|++|.+. .+|..++.+++|++|++++|.++ .+|..|
T Consensus       237 ~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~  312 (727)
T 4b8c_D          237 F-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEF  312 (727)
T ss_dssp             S-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSST
T ss_pred             C-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhh
Confidence            7 45556668999999999999998 77888899999999999999998 78999999999999999999987 778889


Q ss_pred             ccCCcccEeecccccceecCC-cccCc-ccCceEecccccccccCCCCCCCCCCCCcEEEcccc
Q 046712          175 SHVRNLISFNVAYNQFSGMIP-PIYNI-SSLQYIFIHTNRFHGSVPLDNGVNLPNLRYFSISGN  236 (566)
Q Consensus       175 ~~l~~L~~L~l~~~~~~~~~~-~l~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~  236 (566)
                      ..+++|+.|++++|.+.+..+ .+... .....+++++|.+.+.+|       ..|+.|+++.+
T Consensus       313 ~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p-------~~l~~l~l~~n  369 (727)
T 4b8c_D          313 GNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLP-------HERRFIEINTD  369 (727)
T ss_dssp             TSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCC-------CC---------
T ss_pred             hcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCc-------cccceeEeecc
Confidence            999999999999998886665 22222 112235677787776554       34556666655

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.59  E-value=2.7e-15  Score=126.26  Aligned_cols=128  Identities=20%  Similarity=0.222  Sum_probs=113.4

Q ss_pred             CcEEEEEcCCCccc-cccCccCcCCCCCCEEecCCCcccccCCcccCCCCCCCEEeCCCCcCCCcCccccccCCCCcEEE
Q 046712           34 QRVTGLDLRHQSVG-GVLSPFVGNLNFLRSINLPNNSFRGKIPHEVGNLFRLQNLTLTNNYFLGKILTDLSHCSNLMKFE  112 (566)
Q Consensus        34 ~~~~~l~l~~~~i~-~~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~  112 (566)
                      +++++|++++|.++ +.++..+..+++|++|++++|.+++.  ..+.++++|++|++++|.+++..+..+..+++|++|+
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~   94 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN   94 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence            78999999999998 67888899999999999999999855  7799999999999999999877787788899999999


Q ss_pred             cCCCcCCCC-cchhccCCCCCCEEecccccCCCCCC---ccccCCCCCCEEEccC
Q 046712          113 ASNNKLEGE-IPVKISNLLMLQILNIAENHLKGQLP---ASIGNLSALQEIDVRG  163 (566)
Q Consensus       113 l~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~---~~~~~l~~L~~L~l~~  163 (566)
                      +++|.+++. .+..+..+++|++|++++|.+.+..+   ..+..+++|++|++++
T Consensus        95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A           95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred             CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence            999999853 34788999999999999999985544   4789999999999864

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.56  E-value=2.2e-14  Score=124.52  Aligned_cols=131  Identities=19%  Similarity=0.196  Sum_probs=65.9

Q ss_pred             CCeEeccCccccccCCCCCcCCCCCcEEEccCCcceeccchhhhhhcccceEEEccCCcccccCCcCccCCCCCCEEeCc
Q 046712          403 LTQLILEVNNLQGKIPPSNGNCQNLILLTTRKNKLSGIVPRQLLRIITLSVLLDLSDNLLSGHFPTKVGNLKNLVSLDIS  482 (566)
Q Consensus       403 L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls  482 (566)
                      .+.++++++.+. .+|..+  .+++++|++++|.+.+                         ..+..|..+++|++|+++
T Consensus         9 ~~~l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~-------------------------~~~~~~~~l~~L~~L~l~   60 (177)
T 2o6r_A            9 GTEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQS-------------------------LPHGVFDKLTQLTKLSLS   60 (177)
T ss_dssp             TTEEECCSSCCS-SCCTTC--CTTCSEEECCSSCCCC-------------------------CCTTTTTTCTTCSEEECC
T ss_pred             CCEEEecCCCCc-cCCCCC--CCCCcEEEeCCCcccE-------------------------eCHHHhcCcccccEEECC
Confidence            456666666655 233222  2455666665555543                         333334445555555555


Q ss_pred             cccccccCCccccCCCCCcEEeCCCCcccccCCcCCcCCCCCCEEeCCCCccccccCccccccccCceeecccCcCccc
Q 046712          483 SNMFSGEIPTTLGGCTSLEYLGMQDNSFTISIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLLFLNMSYNHFEGK  561 (566)
Q Consensus       483 ~~~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~  561 (566)
                      +|.+.+..+..|..+++|++|++++|.++...+..+..+++|++|++++|.+....+..+..+++|+.|++++|++++.
T Consensus        61 ~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~  139 (177)
T 2o6r_A           61 QNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS  139 (177)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred             CCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeecc
Confidence            5555533333445555555555555555543334445555555555555555543333444555555555555555443

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.55  E-value=5.3e-14  Score=123.62  Aligned_cols=126  Identities=21%  Similarity=0.252  Sum_probs=91.0

Q ss_pred             EEEcCCCccccccCccCcCCCCCCEEecCCCcccccCCcccCCCCCCCEEeCCCCcCCCcCccccccCCCCcEEEcCCCc
Q 046712           38 GLDLRHQSVGGVLSPFVGNLNFLRSINLPNNSFRGKIPHEVGNLFRLQNLTLTNNYFLGKILTDLSHCSNLMKFEASNNK  117 (566)
Q Consensus        38 ~l~l~~~~i~~~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~  117 (566)
                      +++++++.++.. |..+  .++|++|++++|.++ .+|.+|.++++|++|++++|.++...+..|.++++|++|++++|+
T Consensus        14 ~l~~~~~~l~~i-p~~~--~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~   89 (193)
T 2wfh_A           14 VVRCSNKGLKVL-PKGI--PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR   89 (193)
T ss_dssp             EEECTTSCCSSC-CSCC--CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             EEEcCCCCCCcC-CCCC--CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc
Confidence            456666666643 3333  257888888888887 667778888888888888888877777777788888888888888


Q ss_pred             CCCCcchhccCCCCCCEEecccccCCCCCCccccCCCCCCEEEccCCcCc
Q 046712          118 LEGEIPVKISNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLG  167 (566)
Q Consensus       118 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~  167 (566)
                      ++...+..+..+++|++|++++|.+....+..+..+++|++|++++|.+.
T Consensus        90 l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  139 (193)
T 2wfh_A           90 LRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY  139 (193)
T ss_dssp             CCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             cCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence            77666667777777777777777777444445667777777777777664

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.54  E-value=9e-14  Score=122.13  Aligned_cols=128  Identities=20%  Similarity=0.293  Sum_probs=111.6

Q ss_pred             CEEecCCCcccccCCcccCCCCCCCEEeCCCCcCCCcCccccccCCCCcEEEcCCCcCCCCcchhccCCCCCCEEecccc
Q 046712           61 RSINLPNNSFRGKIPHEVGNLFRLQNLTLTNNYFLGKILTDLSHCSNLMKFEASNNKLEGEIPVKISNLLMLQILNIAEN  140 (566)
Q Consensus        61 ~~L~ls~~~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~  140 (566)
                      ++++++++.++ .+|..+.  ++|++|++++|.++ ..+..|.++++|++|++++|.++...+..|..+++|++|++++|
T Consensus        13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N   88 (193)
T 2wfh_A           13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN   88 (193)
T ss_dssp             TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence            68999999998 6776554  58999999999987 45578999999999999999999877788999999999999999


Q ss_pred             cCCCCCCccccCCCCCCEEEccCCcCcccCCcccccCCcccEeeccccccee
Q 046712          141 HLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVAYNQFSG  192 (566)
Q Consensus       141 ~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~  192 (566)
                      .+.+..+..+..+++|++|++++|.++...+..|..+++|+.|++++|.+..
T Consensus        89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C  140 (193)
T 2wfh_A           89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC  140 (193)
T ss_dssp             CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred             ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence            9997777889999999999999999986656678889999999999988763

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.54  E-value=3.3e-15  Score=158.47  Aligned_cols=169  Identities=21%  Similarity=0.274  Sum_probs=120.9

Q ss_pred             CcEEEEEcCCCcccc---------ccCccCcCCCCCCEEecCCCcccccCCcccCCCCCCCEEeCCCCcCCCcCcccccc
Q 046712           34 QRVTGLDLRHQSVGG---------VLSPFVGNLNFLRSINLPNNSFRGKIPHEVGNLFRLQNLTLTNNYFLGKILTDLSH  104 (566)
Q Consensus        34 ~~~~~l~l~~~~i~~---------~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~  104 (566)
                      ..++.++|+.+.+..         ..+..|..++.|++|+|++|.+. .+|..+.++++|++|+|++|.++ ..|..|.+
T Consensus       191 ~~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~  268 (727)
T 4b8c_D          191 ALLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKN  268 (727)
T ss_dssp             -------------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGG
T ss_pred             hHhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhC
Confidence            445566666665543         44778999999999999999998 77877889999999999999998 67788999


Q ss_pred             CCCCcEEEcCCCcCCCCcchhccCCCCCCEEecccccCCCCCCccccCCCCCCEEEccCCcCcccCCcccccCCc-ccEe
Q 046712          105 CSNLMKFEASNNKLEGEIPVKISNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRN-LISF  183 (566)
Q Consensus       105 l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~-L~~L  183 (566)
                      +++|++|+|++|.++ .+|..+..+++|++|+|++|.+. .+|..++.+++|++|++++|.+++..|..+..+.. ...+
T Consensus       269 l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l  346 (727)
T 4b8c_D          269 LSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIF  346 (727)
T ss_dssp             GTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHH
T ss_pred             CCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHH
Confidence            999999999999999 77999999999999999999998 78999999999999999999999888887765432 2346


Q ss_pred             ecccccceecCCcccCcccCceEecccc
Q 046712          184 NVAYNQFSGMIPPIYNISSLQYIFIHTN  211 (566)
Q Consensus       184 ~l~~~~~~~~~~~l~~~~~L~~L~l~~~  211 (566)
                      ++++|.+.+..+     ..++.|+++.+
T Consensus       347 ~l~~N~l~~~~p-----~~l~~l~l~~n  369 (727)
T 4b8c_D          347 YLRDNRPEIPLP-----HERRFIEINTD  369 (727)
T ss_dssp             HHHHCCCCCCCC-----CC---------
T ss_pred             hhccCcccCcCc-----cccceeEeecc
Confidence            788887765544     34555666554

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.53  E-value=1.3e-13  Score=119.68  Aligned_cols=132  Identities=20%  Similarity=0.193  Sum_probs=103.5

Q ss_pred             CcccccccCCCCCcEEEEEcCCCccccccCccCcCCCCCCEEecCCCcccccCCcccCCCCCCCEEeCCCCcCCCcCccc
Q 046712           22 CQWTGVTCGHRRQRVTGLDLRHQSVGGVLSPFVGNLNFLRSINLPNNSFRGKIPHEVGNLFRLQNLTLTNNYFLGKILTD  101 (566)
Q Consensus        22 ~~~~~~~~~~~~~~~~~l~l~~~~i~~~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~  101 (566)
                      |.|.++.|.            +++++.. |..  ..++|++|++++|.+++..+..+.++++|++|++++|.++...+..
T Consensus         7 C~~~~l~~~------------~~~l~~~-p~~--~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~   71 (177)
T 2o6r_A            7 CSGTEIRCN------------SKGLTSV-PTG--IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGV   71 (177)
T ss_dssp             EETTEEECC------------SSCCSSC-CTT--CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTT
T ss_pred             eCCCEEEec------------CCCCccC-CCC--CCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhH
Confidence            666666554            4455533 222  2368999999999998666667889999999999999988777777


Q ss_pred             cccCCCCcEEEcCCCcCCCCcchhccCCCCCCEEecccccCCCCCCccccCCCCCCEEEccCCcCcc
Q 046712          102 LSHCSNLMKFEASNNKLEGEIPVKISNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGG  168 (566)
Q Consensus       102 ~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~  168 (566)
                      +..+++|++|++++|.+++..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+..
T Consensus        72 ~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~  138 (177)
T 2o6r_A           72 FDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC  138 (177)
T ss_dssp             TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             ccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeec
Confidence            8889999999999999986666667888999999999998885555556788899999999888764

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.52  E-value=1.6e-14  Score=125.29  Aligned_cols=104  Identities=21%  Similarity=0.202  Sum_probs=79.2

Q ss_pred             eEEEccCCcccccCCcCccCCCCCCEEeCccccccccCCccccCCCCCcEEeCCCCcccccCCc--CCcCCCCCCEEeCC
Q 046712          453 VLLDLSDNLLSGHFPTKVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTISIPS--TLSSLKSITELDLS  530 (566)
Q Consensus       453 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~--~l~~l~~L~~L~l~  530 (566)
                      +.|++++|.+.+.  ..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+. .+|.  .+..+++|+.|+++
T Consensus        45 ~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~  121 (176)
T 1a9n_A           45 DAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCIL  121 (176)
T ss_dssp             SEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECC
T ss_pred             CEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEEec
Confidence            5555555555543  45678889999999999988544455588899999999999887 4554  78888999999999


Q ss_pred             CCccccccCc----cccccccCceeecccCcCcc
Q 046712          531 RNNLSGHIPQ----YLENLSFLLFLNMSYNHFEG  560 (566)
Q Consensus       531 ~n~~~~~~~~----~l~~l~~L~~L~l~~n~~~~  560 (566)
                      +|++. .+|.    .+..+++|+.|++++|+.+.
T Consensus       122 ~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~~  154 (176)
T 1a9n_A          122 RNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLKE  154 (176)
T ss_dssp             SSGGG-GSTTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred             CCCCC-CcHhHHHHHHHHCCccceeCCCcCCHHH
Confidence            99987 4455    38888999999999887643

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.50  E-value=4.1e-14  Score=122.61  Aligned_cols=132  Identities=15%  Similarity=0.115  Sum_probs=81.9

Q ss_pred             CcCCCCCCEEecCCCcccccCCcccCCC-CCCCEEeCCCCcCCCcCccccccCCCCcEEEcCCCcCCCCcchhccCCCCC
Q 046712           54 VGNLNFLRSINLPNNSFRGKIPHEVGNL-FRLQNLTLTNNYFLGKILTDLSHCSNLMKFEASNNKLEGEIPVKISNLLML  132 (566)
Q Consensus        54 ~~~l~~L~~L~ls~~~l~~~~~~~~~~l-~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L  132 (566)
                      +.++++|++|++++|.++ .++. +..+ ++|++|++++|.+++.  ..+..+++|++|++++|.+++..+..+..+++|
T Consensus        15 ~~~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L   90 (176)
T 1a9n_A           15 YTNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL   90 (176)
T ss_dssp             EECTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred             cCCcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCC
Confidence            455666777777777666 3343 3333 3677777777766543  456666777777777776664333334666677


Q ss_pred             CEEecccccCCCCCCc--cccCCCCCCEEEccCCcCcccCCcc----cccCCcccEeecccccce
Q 046712          133 QILNIAENHLKGQLPA--SIGNLSALQEIDVRGNRLGGRIPST----ISHVRNLISFNVAYNQFS  191 (566)
Q Consensus       133 ~~L~l~~~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~~~~~~----l~~l~~L~~L~l~~~~~~  191 (566)
                      ++|++++|.+. .+|.  .+..+++|++|++++|.+. ..|..    +..+++|+.|++++|...
T Consensus        91 ~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~  153 (176)
T 1a9n_A           91 TELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK  153 (176)
T ss_dssp             CEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred             CEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence            77777777665 4444  5666777777777777765 34443    666777777777666543

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.49  E-value=4.1e-12  Score=125.41  Aligned_cols=86  Identities=13%  Similarity=0.136  Sum_probs=48.7

Q ss_pred             chhhhccCCCCeecccCCcccccccccccCCCCCCEEEccCCcccccCCccccCCCCCCeEeccCccccccCCCCCcCCC
Q 046712          346 PDVIANLVNLNALGVESNQLAGTIPLAIGELKSIQILFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSNGNCQ  425 (566)
Q Consensus       346 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~  425 (566)
                      ...|.+|.+|+++++.++ ++.+...+|.+|.+|+.+.+..+ ++.....+|.+|++|+.+++.++....   ..+..+.
T Consensus       304 ~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~  378 (394)
T 4gt6_A          304 ESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQW---NAISTDS  378 (394)
T ss_dssp             TTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH---HTCBCCC
T ss_pred             ceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeeh---hhhhccC
Confidence            345666777777777653 44455667777777777777654 443445677777777777777665331   2455666


Q ss_pred             CCcEEEccCCc
Q 046712          426 NLILLTTRKNK  436 (566)
Q Consensus       426 ~L~~L~l~~~~  436 (566)
                      .|+.+.+..+.
T Consensus       379 ~L~~i~i~~~~  389 (394)
T 4gt6_A          379 GLQNLPVAPGS  389 (394)
T ss_dssp             CC---------
T ss_pred             CCCEEEeCCCC
Confidence            67766665443

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.46  E-value=1.9e-11  Score=120.60  Aligned_cols=310  Identities=13%  Similarity=0.158  Sum_probs=159.1

Q ss_pred             CceEecccccccccCCCCCCCCCCCCcEEEcccc---cccccCcccccccCCCCeeecccccccccccccccCCCCCcEE
Q 046712          203 LQYIFIHTNRFHGSVPLDNGVNLPNLRYFSISGN---NLTGSLQDSLSNATNLQGLEINRNLFSGKVSINFSRLQNLSRL  279 (566)
Q Consensus       203 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~---~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L  279 (566)
                      |+.+.+... ++ .+....+..+.+|+.+.+..+   .++.....+|..+.+|+.+.+..+ +......+|..+.+|+.+
T Consensus        66 L~sI~iP~s-vt-~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~i  142 (394)
T 4gt6_A           66 LTSVQIPDT-VT-EIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDTV  142 (394)
T ss_dssp             CCEEEECTT-CC-EECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCEE
T ss_pred             CEEEEECCC-ee-EEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhcccccc
Confidence            555554432 21 334444445666666666544   244445556666667776666543 333445556667777777


Q ss_pred             ECCCCccCCcCCCChhhhhhccCCCCCCEEEccCCeeeeecchhHhhhccCCcEEEccCCCCCCCcchhhhccCCCCeec
Q 046712          280 NLGENNLGTGTTNDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQISDTIPDVIANLVNLNALG  359 (566)
Q Consensus       280 ~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~  359 (566)
                      .+... +.....      ..+..+..|+.+.+..+ +..+...++..  ..|+.+.+...... .....+..+.+++...
T Consensus       143 ~lp~~-~~~I~~------~~F~~c~~L~~i~~~~~-~~~I~~~aF~~--~~l~~i~ip~~~~~-i~~~af~~c~~l~~~~  211 (394)
T 4gt6_A          143 TIPEG-VTSVAD------GMFSYCYSLHTVTLPDS-VTAIEERAFTG--TALTQIHIPAKVTR-IGTNAFSECFALSTIT  211 (394)
T ss_dssp             ECCTT-CCEECT------TTTTTCTTCCEEECCTT-CCEECTTTTTT--CCCSEEEECTTCCE-ECTTTTTTCTTCCEEE
T ss_pred             cccce-eeeecc------cceecccccccccccce-eeEeccccccc--cceeEEEECCcccc-cccchhhhccccceec
Confidence            76532 222222      34566667777766544 22233333322  45555555433211 2233455555665555


Q ss_pred             ccCCcccccccc-------------cccCCCCCCEEEccCCcccccCCccccCCCCCCeEeccCccccccCCCCCcCCCC
Q 046712          360 VESNQLAGTIPL-------------AIGELKSIQILFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSNGNCQN  426 (566)
Q Consensus       360 l~~~~~~~~~~~-------------~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~  426 (566)
                      ............             .+.....+..+.+.+. ++.....+|..+..|+.+.+.+.... ....+|.+|+.
T Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~-v~~i~~~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~  289 (394)
T 4gt6_A          212 SDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPNG-VARIETHAFDSCAYLASVKMPDSVVS-IGTGAFMNCPA  289 (394)
T ss_dssp             ECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCTT-EEEECTTTTTTCSSCCEEECCTTCCE-ECTTTTTTCTT
T ss_pred             ccccccccccceeecccccccccccccccccccceEEcCCc-ceEcccceeeecccccEEecccccce-ecCcccccccc
Confidence            443322211000             0111223333333322 11123344555555555555433221 23334444555


Q ss_pred             CcEEEccCCcceeccchhhhhhcccceEEEccCCcccccCCcCccCCCCCCEEeCccccccccCCccccCCCCCcEEeCC
Q 046712          427 LILLTTRKNKLSGIVPRQLLRIITLSVLLDLSDNLLSGHFPTKVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQ  506 (566)
Q Consensus       427 L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~l~~~~~~~~~~~~~L~~L~L~  506 (566)
                      |+.+.+                         . ..+......+|.+|.+|++++|..+ ++.....+|.+|.+|+++.|.
T Consensus       290 L~~i~l-------------------------~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip  342 (394)
T 4gt6_A          290 LQDIEF-------------------------S-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIP  342 (394)
T ss_dssp             CCEEEC-------------------------C-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEC
T ss_pred             cccccC-------------------------C-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEEC
Confidence            554443                         2 2233345567888889999998764 554566788889999999997


Q ss_pred             CCcccccCCcCCcCCCCCCEEeCCCCccccccCccccccccCceeecccCcCc
Q 046712          507 DNSFTISIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLLFLNMSYNHFE  559 (566)
Q Consensus       507 ~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~  559 (566)
                      ++ ++.+...+|.+|++|+.+++.++....   ..+....+|+.+.+..+.+.
T Consensus       343 ~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i~i~~~~~~  391 (394)
T 4gt6_A          343 SS-VTKIPESAFSNCTALNNIEYSGSRSQW---NAISTDSGLQNLPVAPGSID  391 (394)
T ss_dssp             TT-CCBCCGGGGTTCTTCCEEEESSCHHHH---HTCBCCCCC-----------
T ss_pred             cc-cCEEhHhHhhCCCCCCEEEECCceeeh---hhhhccCCCCEEEeCCCCEE
Confidence            65 554566788899999999998876541   45667788888888776543

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.41  E-value=1.2e-12  Score=112.39  Aligned_cols=105  Identities=24%  Similarity=0.263  Sum_probs=53.8

Q ss_pred             CcEEEccCCcceeccchhhhhhcccceEEEccCCcccccCCcCccCCCCCCEEeCccccccccCCccccCCCCCcEEeCC
Q 046712          427 LILLTTRKNKLSGIVPRQLLRIITLSVLLDLSDNLLSGHFPTKVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQ  506 (566)
Q Consensus       427 L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~l~~~~~~~~~~~~~L~~L~L~  506 (566)
                      .+.++++++.+.. +|..+   ...++.|++++|.+.+..+..|..+++|+.|++++|.+.+..+..|..+++|++|+|+
T Consensus        11 ~~~l~~s~n~l~~-ip~~~---~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~   86 (170)
T 3g39_A           11 GTTVDCSGKSLAS-VPTGI---PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN   86 (170)
T ss_dssp             TTEEECTTSCCSS-CCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCEEEeCCCCcCc-cCccC---CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence            3455666555542 23222   2333555555555555545555555555555555555553333444555555555555


Q ss_pred             CCcccccCCcCCcCCCCCCEEeCCCCccc
Q 046712          507 DNSFTISIPSTLSSLKSITELDLSRNNLS  535 (566)
Q Consensus       507 ~n~~~~~~~~~l~~l~~L~~L~l~~n~~~  535 (566)
                      +|.++...++.|..+++|++|+|++|++.
T Consensus        87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  115 (170)
T 3g39_A           87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWD  115 (170)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             CCccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence            55555433344555555555555555554

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.40  E-value=1.9e-15  Score=133.93  Aligned_cols=156  Identities=24%  Similarity=0.242  Sum_probs=93.5

Q ss_pred             ccCCCCCCEEEccCCcccccCCc------cccCCCCCCeEeccCccccccCCCCCcCCCCCcEEEccCCcceeccchhhh
Q 046712          373 IGELKSIQILFLNENFLRGTIPS------SLGNLTLLTQLILEVNNLQGKIPPSNGNCQNLILLTTRKNKLSGIVPRQLL  446 (566)
Q Consensus       373 ~~~~~~L~~L~l~~n~~~~~~~~------~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~  446 (566)
                      +.....++.++++++.+.+..+.      .+..+++|++|++++|.+.+ ++ .+..+++|++|++++|.+. .+|.   
T Consensus        14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~---   87 (198)
T 1ds9_A           14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIEN---   87 (198)
T ss_dssp             HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSS---
T ss_pred             HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccc---
Confidence            34445566666666666554444      67777778888887777764 44 6666777777777777665 2232   


Q ss_pred             hhcccceEEEccCCcccccCCcCccCCCCCCEEeCccccccccCCccccCCCCCcEEeCCCCcccccCC-cCCcCCCCCC
Q 046712          447 RIITLSVLLDLSDNLLSGHFPTKVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTISIP-STLSSLKSIT  525 (566)
Q Consensus       447 ~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~-~~l~~l~~L~  525 (566)
                                            .+..+++|+.|++++|.+.+ ++ .+..+++|++|++++|.++...+ +.+..+++|+
T Consensus        88 ----------------------~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~  143 (198)
T 1ds9_A           88 ----------------------LDAVADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLE  143 (198)
T ss_dssp             ----------------------HHHHHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCS
T ss_pred             ----------------------hhhcCCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCC
Confidence                                  23334556666666666653 33 35556666666666666653211 3456666666


Q ss_pred             EEeCCCCccccccCc----------cccccccCceeecccCcCcc
Q 046712          526 ELDLSRNNLSGHIPQ----------YLENLSFLLFLNMSYNHFEG  560 (566)
Q Consensus       526 ~L~l~~n~~~~~~~~----------~l~~l~~L~~L~l~~n~~~~  560 (566)
                      +|++++|++.+..|.          .+..+++|+.|+  +++++.
T Consensus       144 ~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~~  186 (198)
T 1ds9_A          144 DLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVDV  186 (198)
T ss_dssp             EEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGTT
T ss_pred             EEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccCH
Confidence            777766666554443          266677777766  666554

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.38  E-value=2.6e-12  Score=110.58  Aligned_cols=104  Identities=25%  Similarity=0.261  Sum_probs=60.8

Q ss_pred             cEEEccCCcceeccchhhhhhcccceEEEccCCcccccCCcCccCCCCCCEEeCccccccccCCccccCCCCCcEEeCCC
Q 046712          428 ILLTTRKNKLSGIVPRQLLRIITLSVLLDLSDNLLSGHFPTKVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQD  507 (566)
Q Consensus       428 ~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~l~~~~~~~~~~~~~L~~L~L~~  507 (566)
                      +.++++++.+. .+|..+   +..++.|++++|.+.+..+..|..+++|+.|++++|++.+..+..|..+++|++|+|++
T Consensus        15 ~~l~~~~n~l~-~iP~~~---~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~   90 (174)
T 2r9u_A           15 TLVNCQNIRLA-SVPAGI---PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND   90 (174)
T ss_dssp             SEEECCSSCCS-SCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             cEEEeCCCCCC-ccCCCc---CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence            55666666654 333322   23446666666666655556666666666666666666643334455666666666666


Q ss_pred             CcccccCCcCCcCCCCCCEEeCCCCccc
Q 046712          508 NSFTISIPSTLSSLKSITELDLSRNNLS  535 (566)
Q Consensus       508 n~~~~~~~~~l~~l~~L~~L~l~~n~~~  535 (566)
                      |.++...+..|..+++|++|++++|++.
T Consensus        91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~  118 (174)
T 2r9u_A           91 NHLKSIPRGAFDNLKSLTHIYLYNNPWD  118 (174)
T ss_dssp             SCCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred             CccceeCHHHhccccCCCEEEeCCCCcc
Confidence            6666433344666666666666666665

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.35  E-value=8.2e-12  Score=107.13  Aligned_cols=86  Identities=22%  Similarity=0.185  Sum_probs=40.8

Q ss_pred             CCCCEEeCCCCcCCCcCccccccCCCCcEEEcCCCcCCCCcchhccCCCCCCEEecccccCCCCCCccccCCCCCCEEEc
Q 046712           82 FRLQNLTLTNNYFLGKILTDLSHCSNLMKFEASNNKLEGEIPVKISNLLMLQILNIAENHLKGQLPASIGNLSALQEIDV  161 (566)
Q Consensus        82 ~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l  161 (566)
                      ++|++|++++|.+++..+..|..+++|++|++++|+++...+..+.++++|++|++++|.+.+..+..+..+++|++|++
T Consensus        30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L  109 (170)
T 3g39_A           30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWL  109 (170)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEe
Confidence            34444444444444444444444444444444444444333333444455555555555544333334555555555555


Q ss_pred             cCCcCc
Q 046712          162 RGNRLG  167 (566)
Q Consensus       162 ~~~~i~  167 (566)
                      ++|.+.
T Consensus       110 ~~N~~~  115 (170)
T 3g39_A          110 LNNPWD  115 (170)
T ss_dssp             CSSCBC
T ss_pred             CCCCCC
Confidence            555554

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.35  E-value=4.5e-14  Score=137.31  Aligned_cols=185  Identities=17%  Similarity=0.062  Sum_probs=124.3

Q ss_pred             CCCCCEEEccCCcccccCCccc----c-CCCCCCeEeccCccccccCCCCC-cCCCCCcEEEccCCcceeccchhhhhh-
Q 046712          376 LKSIQILFLNENFLRGTIPSSL----G-NLTLLTQLILEVNNLQGKIPPSN-GNCQNLILLTTRKNKLSGIVPRQLLRI-  448 (566)
Q Consensus       376 ~~~L~~L~l~~n~~~~~~~~~~----~-~~~~L~~L~l~~~~l~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~-  448 (566)
                      .++|++|++++|.++......+    . ..++|++|++++|.+.......+ ..+++|+.|++++|.+.+.....+... 
T Consensus        71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L  150 (372)
T 3un9_A           71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL  150 (372)
T ss_dssp             HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred             HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence            4679999999999875333322    2 23689999999998864333222 346789999999999876555554432 


Q ss_pred             ---cccceEEEccCCcccccCC----cCccCCCCCCEEeCccccccccC----CccccCCCCCcEEeCCCCccccc----
Q 046712          449 ---ITLSVLLDLSDNLLSGHFP----TKVGNLKNLVSLDISSNMFSGEI----PTTLGGCTSLEYLGMQDNSFTIS----  513 (566)
Q Consensus       449 ---~~~l~~L~l~~~~~~~~~~----~~~~~~~~L~~L~ls~~~l~~~~----~~~~~~~~~L~~L~L~~n~~~~~----  513 (566)
                         .+.++.|++++|.+++...    .++...++|++|++++|.+.+..    +..+...++|++|+|++|.+++.    
T Consensus       151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~  230 (372)
T 3un9_A          151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA  230 (372)
T ss_dssp             HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred             HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence               2446889999998875332    33467788999999999887433    45566778899999999988753    


Q ss_pred             CCcCCcCCCCCCEEeCCCCccccccCccccccc-----cCceee--cccCcCcc
Q 046712          514 IPSTLSSLKSITELDLSRNNLSGHIPQYLENLS-----FLLFLN--MSYNHFEG  560 (566)
Q Consensus       514 ~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~-----~L~~L~--l~~n~~~~  560 (566)
                      +.+.+...++|++|+|++|.+.......+..+.     .|+.+.  +.++.++.
T Consensus       231 l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~~  284 (372)
T 3un9_A          231 LARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVSE  284 (372)
T ss_dssp             HHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----CHH
T ss_pred             HHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCccCH
Confidence            334455668899999999988765444444331     166666  66665543

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.34  E-value=3.1e-14  Score=126.04  Aligned_cols=133  Identities=24%  Similarity=0.292  Sum_probs=79.4

Q ss_pred             hhccCCCCeecccCCcccccccc------cccCCCCCCEEEccCCcccccCCccccCCCCCCeEeccCccccccCCCCCc
Q 046712          349 IANLVNLNALGVESNQLAGTIPL------AIGELKSIQILFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSNG  422 (566)
Q Consensus       349 ~~~l~~L~~L~l~~~~~~~~~~~------~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~  422 (566)
                      +...+.++.++++.+.+.+..+.      .+..+++|++|++++|.+++ ++ .+..+++|+.|++++|.+. .+|..+.
T Consensus        14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~   90 (198)
T 1ds9_A           14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDA   90 (198)
T ss_dssp             HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHH
T ss_pred             HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhh
Confidence            34456666666666666655444      67777788888888887774 45 6777788888888888777 4555555


Q ss_pred             CCCCCcEEEccCCcceeccchhhhhhcccceEEEccCCcccccCC-cCccCCCCCCEEeCcccccc
Q 046712          423 NCQNLILLTTRKNKLSGIVPRQLLRIITLSVLLDLSDNLLSGHFP-TKVGNLKNLVSLDISSNMFS  487 (566)
Q Consensus       423 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~-~~~~~~~~L~~L~ls~~~l~  487 (566)
                      .+++|++|++++|.+.+. + .+..+..+ +.|++++|.+.+... ..+..+++|++|++++|++.
T Consensus        91 ~~~~L~~L~L~~N~l~~l-~-~~~~l~~L-~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~  153 (198)
T 1ds9_A           91 VADTLEELWISYNQIASL-S-GIEKLVNL-RVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLY  153 (198)
T ss_dssp             HHHHCSEEEEEEEECCCH-H-HHHHHHHS-SEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHH
T ss_pred             cCCcCCEEECcCCcCCcC-C-ccccCCCC-CEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccc
Confidence            667777777777776642 2 23333222 444444444442211 23344455555555555444

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.33  E-value=1.2e-11  Score=106.45  Aligned_cols=86  Identities=27%  Similarity=0.238  Sum_probs=39.9

Q ss_pred             CCCCEEeCCCCcCCCcCccccccCCCCcEEEcCCCcCCCCcchhccCCCCCCEEecccccCCCCCCccccCCCCCCEEEc
Q 046712           82 FRLQNLTLTNNYFLGKILTDLSHCSNLMKFEASNNKLEGEIPVKISNLLMLQILNIAENHLKGQLPASIGNLSALQEIDV  161 (566)
Q Consensus        82 ~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l  161 (566)
                      ++|++|++++|.+++..+..|.++++|++|++++|++++..+..+.++++|++|++++|.+.+..+..+..+++|++|++
T Consensus        33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L  112 (174)
T 2r9u_A           33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYL  112 (174)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred             CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEe
Confidence            34444444444444433444444444444444444444333333344455555555555554322333555555555555


Q ss_pred             cCCcCc
Q 046712          162 RGNRLG  167 (566)
Q Consensus       162 ~~~~i~  167 (566)
                      ++|.+.
T Consensus       113 ~~N~~~  118 (174)
T 2r9u_A          113 YNNPWD  118 (174)
T ss_dssp             CSSCBC
T ss_pred             CCCCcc
Confidence            555554

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.29  E-value=5.1e-14  Score=136.89  Aligned_cols=184  Identities=15%  Similarity=0.077  Sum_probs=126.0

Q ss_pred             cCCCCeecccCCccccccccccc-----CCCCCCEEEccCCcccccCCccc-cCCCCCCeEeccCccccccCCCCC----
Q 046712          352 LVNLNALGVESNQLAGTIPLAIG-----ELKSIQILFLNENFLRGTIPSSL-GNLTLLTQLILEVNNLQGKIPPSN----  421 (566)
Q Consensus       352 l~~L~~L~l~~~~~~~~~~~~~~-----~~~~L~~L~l~~n~~~~~~~~~~-~~~~~L~~L~l~~~~l~~~~~~~~----  421 (566)
                      .+.|++|++++|.++......+.     ..++|++|++++|.+++.....+ ..+++|+.|++++|.+.......+    
T Consensus        71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L  150 (372)
T 3un9_A           71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL  150 (372)
T ss_dssp             HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred             HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence            47899999999998754433332     23799999999999865333222 335689999999999875433333    


Q ss_pred             -cCCCCCcEEEccCCcceeccchhh----hhhcccceEEEccCCcccccC----CcCccCCCCCCEEeCccccccccC--
Q 046712          422 -GNCQNLILLTTRKNKLSGIVPRQL----LRIITLSVLLDLSDNLLSGHF----PTKVGNLKNLVSLDISSNMFSGEI--  490 (566)
Q Consensus       422 -~~~~~L~~L~l~~~~~~~~~~~~~----~~~~~~l~~L~l~~~~~~~~~----~~~~~~~~~L~~L~ls~~~l~~~~--  490 (566)
                       ...++|++|++++|.+.+.....+    ..... ++.|++++|.+.+..    ...+...++|++|++++|.+++..  
T Consensus       151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~-L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~  229 (372)
T 3un9_A          151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTS-VTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAAL  229 (372)
T ss_dssp             HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSS-CCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHH
T ss_pred             HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCC-cCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHH
Confidence             246889999999999875433333    33344 599999999987543    445667789999999999997533  


Q ss_pred             --CccccCCCCCcEEeCCCCcccccCCcCCcCC---C--CCCEEe--CCCCcccc
Q 046712          491 --PTTLGGCTSLEYLGMQDNSFTISIPSTLSSL---K--SITELD--LSRNNLSG  536 (566)
Q Consensus       491 --~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l---~--~L~~L~--l~~n~~~~  536 (566)
                        +..+..+++|++|+|++|.+++.....+..+   .  .|+.+.  +.++.+..
T Consensus       230 ~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~~  284 (372)
T 3un9_A          230 ALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVSE  284 (372)
T ss_dssp             HHHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----CHH
T ss_pred             HHHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCccCH
Confidence              3445567899999999999886544433322   2  277777  77776653

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=99.27  E-value=1.2e-09  Score=107.31  Aligned_cols=315  Identities=10%  Similarity=0.065  Sum_probs=146.0

Q ss_pred             CcCCCCCCEEecCCCcccccCCcccCCCCCCCEEeCCCCcCCCcCccccccCCCCcEEEcCCCcCCCCcchhccCCCCCC
Q 046712           54 VGNLNFLRSINLPNNSFRGKIPHEVGNLFRLQNLTLTNNYFLGKILTDLSHCSNLMKFEASNNKLEGEIPVKISNLLMLQ  133 (566)
Q Consensus        54 ~~~l~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~  133 (566)
                      +....+|+.+.+... ++.....+|.++.+|+.+.+..+ ++.....+|.++ +|+.+.+..+ +..+...+|..+ +|+
T Consensus        42 ~~~~~~i~~v~ip~~-vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~~-~L~  116 (379)
T 4h09_A           42 YKDRDRISEVRVNSG-ITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQGT-DLD  116 (379)
T ss_dssp             GGGGGGCSEEEECTT-EEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTTC-CCS
T ss_pred             cccccCCEEEEeCCC-ccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceeccC-Ccc
Confidence            445566777777543 44445567777777777777654 455555666666 4666666543 332333344443 567


Q ss_pred             EEecccccCCCCCCccccCCCCCCEEEccCCcCcccCCcccccCCcccEeecccccceecCCcccCcccCceEecccccc
Q 046712          134 ILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVAYNQFSGMIPPIYNISSLQYIFIHTNRF  213 (566)
Q Consensus       134 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~  213 (566)
                      .+.+..+-.. ....++.++ +++.+.+..+ ++.....++..+.+++...+....................        
T Consensus       117 ~i~lp~~~~~-i~~~~F~~~-~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--------  185 (379)
T 4h09_A          117 DFEFPGATTE-IGNYIFYNS-SVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKT--------  185 (379)
T ss_dssp             EEECCTTCCE-ECTTTTTTC-CCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSS--------
T ss_pred             cccCCCcccc-ccccccccc-eeeeeeccce-eeccccchhcccccccccccccccceeecccceecccccc--------
Confidence            7766554221 223333333 4555544433 2223344455555555554433221111000000000000        


Q ss_pred             cccCCCCCCCCCCCCcEEEcccccccccCcccccccCCCCeeecccccccccccccccCCCCCcEEECCCCccCCcCCCC
Q 046712          214 HGSVPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINRNLFSGKVSINFSRLQNLSRLNLGENNLGTGTTND  293 (566)
Q Consensus       214 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~  293 (566)
                         .. ........+..+.+.... .......+..+.+++.+.+..+ +......+|..+..|+.+.+..+ ++..+.  
T Consensus       186 ---~~-~~~~~~~~~~~~~~~~~~-~~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~--  256 (379)
T 4h09_A          186 ---IL-ESYPAAKTGTEFTIPSTV-KTVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGS--  256 (379)
T ss_dssp             ---EE-EECCTTCCCSEEECCTTC-CEECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECT--
T ss_pred             ---ee-ccccccccccccccccce-eEEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCc--
Confidence               00 000022333333333221 1122333444455555555332 22233334445555555554432 222222  


Q ss_pred             hhhhhhccCCCCCCEEEccCCeeeeecchhHhhhccCCcEEEccCCCCCCCcchhhhccCCCCeecccCCcccccccccc
Q 046712          294 LDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQISDTIPDVIANLVNLNALGVESNQLAGTIPLAI  373 (566)
Q Consensus       294 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~  373 (566)
                          .++..+.+|+.+.+...                          +.......|..+.+|+++.+.++.++.+...+|
T Consensus       257 ----~aF~~~~~l~~i~l~~~--------------------------i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF  306 (379)
T 4h09_A          257 ----FLLQNCTALKTLNFYAK--------------------------VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVF  306 (379)
T ss_dssp             ----TTTTTCTTCCEEEECCC--------------------------CSEECTTTTTTCTTCCEEEECCTTCCEECTTTT
T ss_pred             ----cccceeehhcccccccc--------------------------ceeccccccccccccccccccccccceehhhhh
Confidence                23444445555444321                          111222345666777777776666655556667


Q ss_pred             cCCCCCCEEEccCCcccccCCccccCCCCCCeEeccCccccccCCCCCcCCC
Q 046712          374 GELKSIQILFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSNGNCQ  425 (566)
Q Consensus       374 ~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~  425 (566)
                      .+|.+|+.+.+..+ ++.....+|.++.+|+.+.+..+ +......+|.+|.
T Consensus       307 ~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~  356 (379)
T 4h09_A          307 MDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGSS  356 (379)
T ss_dssp             TTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTSS
T ss_pred             cCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCCC
Confidence            77777777777644 33344556666777776666443 3333344454443

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=99.21  E-value=4.1e-09  Score=103.36  Aligned_cols=167  Identities=10%  Similarity=0.040  Sum_probs=96.0

Q ss_pred             ccCCCCCCEEEccCCcccccCCccccCCCCCCeEeccCccccccCCCCCcCCCCCcEEEccCCcceeccchhhhhhcccc
Q 046712          373 IGELKSIQILFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSNGNCQNLILLTTRKNKLSGIVPRQLLRIITLS  452 (566)
Q Consensus       373 ~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l  452 (566)
                      +..+..+..+.+...... .....+..+..|+.+.+..+ +......++..+..|+.+.+..+ +.......+..... +
T Consensus       190 ~~~~~~~~~~~~~~~~~~-i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~-l  265 (379)
T 4h09_A          190 YPAAKTGTEFTIPSTVKT-VTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTA-L  265 (379)
T ss_dssp             CCTTCCCSEEECCTTCCE-ECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTT-C
T ss_pred             ccccccccccccccceeE-Eeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeeh-h
Confidence            344455555555443332 33445555566666666433 22233445566666666666543 22222222222222 2


Q ss_pred             eEEEccCCcccccCCcCccCCCCCCEEeCccccccccCCccccCCCCCcEEeCCCCcccccCCcCCcCCCCCCEEeCCCC
Q 046712          453 VLLDLSDNLLSGHFPTKVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTISIPSTLSSLKSITELDLSRN  532 (566)
Q Consensus       453 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n  532 (566)
                      +.+.+... +......+|.++++|+.+++.++.+......+|.+|.+|+.+.|.++ ++.+...+|.+|++|+.+.+..+
T Consensus       266 ~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~  343 (379)
T 4h09_A          266 KTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS  343 (379)
T ss_dssp             CEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT
T ss_pred             cccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc
Confidence            55555433 33345567778888888888877776556677888888888888654 55455677888888888887654


Q ss_pred             ccccccCccccccc
Q 046712          533 NLSGHIPQYLENLS  546 (566)
Q Consensus       533 ~~~~~~~~~l~~l~  546 (566)
                       ++......|..+.
T Consensus       344 -v~~I~~~aF~~c~  356 (379)
T 4h09_A          344 -ITLIESGAFEGSS  356 (379)
T ss_dssp             -CCEECTTTTTTSS
T ss_pred             -cCEEchhHhhCCC
Confidence             4434445666554

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.13  E-value=2.6e-10  Score=110.53  Aligned_cols=99  Identities=19%  Similarity=0.174  Sum_probs=72.6

Q ss_pred             CCC-ccccccCccCcCCCCCCEEecCC-CcccccCCcccCCCCCCCEEeCCCCcCCCcCccccccCCCCcEEEcCCCcCC
Q 046712           42 RHQ-SVGGVLSPFVGNLNFLRSINLPN-NSFRGKIPHEVGNLFRLQNLTLTNNYFLGKILTDLSHCSNLMKFEASNNKLE  119 (566)
Q Consensus        42 ~~~-~i~~~~~~~~~~l~~L~~L~ls~-~~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~  119 (566)
                      +++ +++. +|. |..+++|++|+|++ |.++...+.+|.++++|++|+|++|.+++..+..|.++++|++|+|++|+++
T Consensus        16 ~~~n~l~~-ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~   93 (347)
T 2ifg_A           16 TRDGALDS-LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALE   93 (347)
T ss_dssp             CSSCCCTT-TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCS
T ss_pred             CCCCCCCc-cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccc
Confidence            344 5664 455 88888888888886 8888666677888888888888888888777777888888888888888887


Q ss_pred             CCcchhccCCCCCCEEecccccCC
Q 046712          120 GEIPVKISNLLMLQILNIAENHLK  143 (566)
Q Consensus       120 ~~~~~~l~~l~~L~~L~l~~~~~~  143 (566)
                      ...+..+..++ |++|++.+|.+.
T Consensus        94 ~~~~~~~~~~~-L~~l~l~~N~~~  116 (347)
T 2ifg_A           94 SLSWKTVQGLS-LQELVLSGNPLH  116 (347)
T ss_dssp             CCCSTTTCSCC-CCEEECCSSCCC
T ss_pred             eeCHHHcccCC-ceEEEeeCCCcc
Confidence            54444444444 677777666654

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.09  E-value=2.7e-10  Score=110.43  Aligned_cols=89  Identities=22%  Similarity=0.223  Sum_probs=44.2

Q ss_pred             ccCCCCCCEEeCcc-ccccccCCccccCCCCCcEEeCCCCcccccCCcCCcCCCCCCEEeCCCCccccccCccccccccC
Q 046712          470 VGNLKNLVSLDISS-NMFSGEIPTTLGGCTSLEYLGMQDNSFTISIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFL  548 (566)
Q Consensus       470 ~~~~~~L~~L~ls~-~~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L  548 (566)
                      +..+++|+.|+|++ |.+.+..+..|.++++|++|+|++|.+++..+..|.++++|+.|+|++|++....+..+..++ |
T Consensus        27 l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L  105 (347)
T 2ifg_A           27 LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-L  105 (347)
T ss_dssp             SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-C
T ss_pred             CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-c
Confidence            44455555555553 555433334455555555555555555544444555555555555555555533333333333 5


Q ss_pred             ceeecccCcCc
Q 046712          549 LFLNMSYNHFE  559 (566)
Q Consensus       549 ~~L~l~~n~~~  559 (566)
                      +.|++.+|++.
T Consensus       106 ~~l~l~~N~~~  116 (347)
T 2ifg_A          106 QELVLSGNPLH  116 (347)
T ss_dssp             CEEECCSSCCC
T ss_pred             eEEEeeCCCcc
Confidence            55555555443

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.90  E-value=5e-10  Score=107.71  Aligned_cols=85  Identities=15%  Similarity=0.176  Sum_probs=45.9

Q ss_pred             CCCCCCEEeCccccccccCCccc---cCCCCCcEEeCCCCccccc----CCcCCcCCCCCCEEeCCCCccccccCccccc
Q 046712          472 NLKNLVSLDISSNMFSGEIPTTL---GGCTSLEYLGMQDNSFTIS----IPSTLSSLKSITELDLSRNNLSGHIPQYLEN  544 (566)
Q Consensus       472 ~~~~L~~L~ls~~~l~~~~~~~~---~~~~~L~~L~L~~n~~~~~----~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~  544 (566)
                      .+|+|+.|++++|.+.+..+..+   ..+++|++|+|+.|.+.+.    ++.++..+++|+.|++++|.++...-+.+..
T Consensus       250 ~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~  329 (362)
T 2ra8_A          250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQK  329 (362)
T ss_dssp             TCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHH
T ss_pred             CCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHH
Confidence            45677777777766653222222   1356677777777766653    2333345677777777777665433333332


Q ss_pred             cccCceeecccCc
Q 046712          545 LSFLLFLNMSYNH  557 (566)
Q Consensus       545 l~~L~~L~l~~n~  557 (566)
                      .- ..++++++++
T Consensus       330 al-g~~~~~~~~~  341 (362)
T 2ra8_A          330 SL-PMKIDVSDSQ  341 (362)
T ss_dssp             HC-CSEEECCSBC
T ss_pred             Hc-CCEEEecCCc
Confidence            10 2445665554

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.80  E-value=5.9e-10  Score=107.24  Aligned_cols=183  Identities=19%  Similarity=0.261  Sum_probs=108.3

Q ss_pred             CCCCeecccCCcccc-c-------ccccccCCCCCCEEEccCCccc---------ccCCccccCCCCCCeEeccCccccc
Q 046712          353 VNLNALGVESNQLAG-T-------IPLAIGELKSIQILFLNENFLR---------GTIPSSLGNLTLLTQLILEVNNLQG  415 (566)
Q Consensus       353 ~~L~~L~l~~~~~~~-~-------~~~~~~~~~~L~~L~l~~n~~~---------~~~~~~~~~~~~L~~L~l~~~~l~~  415 (566)
                      ..++.|.+..+...+ .       +..+...+++|+.|.+.+....         +.+...+..+|+|+.|.++++.-. 
T Consensus       107 ~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-  185 (362)
T 2ra8_A          107 PSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-  185 (362)
T ss_dssp             GGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-
T ss_pred             hhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-
Confidence            456677776554331 1       1223456778888888654321         012233455677777777665211 


Q ss_pred             cCCCCCcCCCCCcEEEccCCcceeccchhhhhhcccceEEEccCCcccccCCcCccCCCCCCEEeCcc--cccc-c----
Q 046712          416 KIPPSNGNCQNLILLTTRKNKLSGIVPRQLLRIITLSVLLDLSDNLLSGHFPTKVGNLKNLVSLDISS--NMFS-G----  488 (566)
Q Consensus       416 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~--~~l~-~----  488 (566)
                      .++. + ..++|+.|++..|.+.......+.                       ...+|+|+.|+|+.  +... +    
T Consensus       186 ~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~-----------------------~~~lp~L~~L~L~~~~~~~~~~~~~~  240 (362)
T 2ra8_A          186 SIGK-K-PRPNLKSLEIISGGLPDSVVEDIL-----------------------GSDLPNLEKLVLYVGVEDYGFDGDMN  240 (362)
T ss_dssp             BCCS-C-BCTTCSEEEEECSBCCHHHHHHHH-----------------------HSBCTTCCEEEEECBCGGGTCCSCGG
T ss_pred             eecc-c-cCCCCcEEEEecCCCChHHHHHHH-----------------------HccCCCCcEEEEeccccccccchhHH
Confidence            1121 2 255666666655554322111111                       12578888888753  1111 0    


Q ss_pred             cCCccc--cCCCCCcEEeCCCCcccccCCcCC---cCCCCCCEEeCCCCccccc----cCccccccccCceeecccCcCc
Q 046712          489 EIPTTL--GGCTSLEYLGMQDNSFTISIPSTL---SSLKSITELDLSRNNLSGH----IPQYLENLSFLLFLNMSYNHFE  559 (566)
Q Consensus       489 ~~~~~~--~~~~~L~~L~L~~n~~~~~~~~~l---~~l~~L~~L~l~~n~~~~~----~~~~l~~l~~L~~L~l~~n~~~  559 (566)
                      .+...+  ..+++|++|++++|.+.+..+..+   ..+++|++|+|+.|.+.+.    ++..+..+++|+.|++++|.++
T Consensus       241 ~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~  320 (362)
T 2ra8_A          241 VFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS  320 (362)
T ss_dssp             GTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred             HHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence            111222  357999999999999875332222   3578999999999999864    4555677899999999999887


Q ss_pred             cc
Q 046712          560 GK  561 (566)
Q Consensus       560 ~~  561 (566)
                      +.
T Consensus       321 d~  322 (362)
T 2ra8_A          321 DE  322 (362)
T ss_dssp             HH
T ss_pred             HH
Confidence            53

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.62  E-value=2.7e-09  Score=92.60  Aligned_cols=119  Identities=13%  Similarity=0.121  Sum_probs=71.7

Q ss_pred             ccCccCcCCCCCCEEecCCC-ccccc----CCcccCCCCCCCEEeCCCCcCCCcCc----cccccCCCCcEEEcCCCcCC
Q 046712           49 VLSPFVGNLNFLRSINLPNN-SFRGK----IPHEVGNLFRLQNLTLTNNYFLGKIL----TDLSHCSNLMKFEASNNKLE  119 (566)
Q Consensus        49 ~~~~~~~~l~~L~~L~ls~~-~l~~~----~~~~~~~l~~L~~L~l~~~~l~~~~~----~~~~~l~~L~~L~l~~~~~~  119 (566)
                      .+...+...++|++|++++| .+.+.    +..++...++|++|++++|.+.....    ..+...+.|++|++++|.+.
T Consensus        27 ~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~  106 (185)
T 1io0_A           27 TLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFIS  106 (185)
T ss_dssp             HHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCC
T ss_pred             HHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCC
Confidence            34445667778888888887 77643    34455666777888887777654332    23444567777777777766


Q ss_pred             CC----cchhccCCCCCCEEec--ccccCCCC----CCccccCCCCCCEEEccCCcCc
Q 046712          120 GE----IPVKISNLLMLQILNI--AENHLKGQ----LPASIGNLSALQEIDVRGNRLG  167 (566)
Q Consensus       120 ~~----~~~~l~~l~~L~~L~l--~~~~~~~~----~~~~~~~l~~L~~L~l~~~~i~  167 (566)
                      +.    +...+...+.|++|++  ++|.+...    +...+...++|++|++++|.+.
T Consensus       107 ~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          107 GSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             HHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence            42    2344555566666666  55666532    2233344456666666666553

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.59  E-value=5.9e-09  Score=87.65  Aligned_cols=81  Identities=12%  Similarity=0.042  Sum_probs=41.4

Q ss_pred             eEEEccCCcccccCCcCccCCCCCCEEeCcccc-ccccCCccccCC----CCCcEEeCCCCc-ccccCCcCCcCCCCCCE
Q 046712          453 VLLDLSDNLLSGHFPTKVGNLKNLVSLDISSNM-FSGEIPTTLGGC----TSLEYLGMQDNS-FTISIPSTLSSLKSITE  526 (566)
Q Consensus       453 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~-l~~~~~~~~~~~----~~L~~L~L~~n~-~~~~~~~~l~~l~~L~~  526 (566)
                      +.|++++|.+++.....+..+++|++|+|++|. +++.....+..+    ++|++|+|++|. +++.....+..+++|+.
T Consensus        64 ~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~~  143 (176)
T 3e4g_A           64 QAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNLKY  143 (176)
T ss_dssp             EEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTCCE
T ss_pred             eEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCCCE
Confidence            555555555555444455555555555555553 443333333332    345555555553 55443344455555555


Q ss_pred             EeCCCCc
Q 046712          527 LDLSRNN  533 (566)
Q Consensus       527 L~l~~n~  533 (566)
                      |++++|.
T Consensus       144 L~L~~c~  150 (176)
T 3e4g_A          144 LFLSDLP  150 (176)
T ss_dssp             EEEESCT
T ss_pred             EECCCCC
Confidence            5555553

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.53  E-value=1.4e-08  Score=87.96  Aligned_cols=88  Identities=19%  Similarity=0.226  Sum_probs=45.0

Q ss_pred             CCCCCCEEeCccccccccC----CccccCCCCCcEEeCCCCccccc----CCcCCcCCCCCCEEeC--CCCccccc----
Q 046712          472 NLKNLVSLDISSNMFSGEI----PTTLGGCTSLEYLGMQDNSFTIS----IPSTLSSLKSITELDL--SRNNLSGH----  537 (566)
Q Consensus       472 ~~~~L~~L~ls~~~l~~~~----~~~~~~~~~L~~L~L~~n~~~~~----~~~~l~~l~~L~~L~l--~~n~~~~~----  537 (566)
                      ..++|++|+|++|.+.+..    ...+...++|++|+|++|.+.+.    +.+++...++|++|+|  ++|.+...    
T Consensus        63 ~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~  142 (185)
T 1io0_A           63 TNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEME  142 (185)
T ss_dssp             TCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHH
T ss_pred             hCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHH
Confidence            3445555555555554321    22333445566666666655542    2344455556666666  55655532    


Q ss_pred             cCccccccccCceeecccCcCc
Q 046712          538 IPQYLENLSFLLFLNMSYNHFE  559 (566)
Q Consensus       538 ~~~~l~~l~~L~~L~l~~n~~~  559 (566)
                      +.+.+...++|++|++++|.+.
T Consensus       143 l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          143 IANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HHHHHHHCSSCCEEECCCSSHH
T ss_pred             HHHHHHhCCCcCEEeccCCCCC
Confidence            2334444456666666666554

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.33  E-value=3.7e-08  Score=89.60  Aligned_cols=80  Identities=23%  Similarity=0.393  Sum_probs=53.6

Q ss_pred             ccCCCCcEEEcCCCcCCC--CcchhccCCCCCCEEecccccCCCCCCccccCCC--CCCEEEccCCcCcccCC-------
Q 046712          103 SHCSNLMKFEASNNKLEG--EIPVKISNLLMLQILNIAENHLKGQLPASIGNLS--ALQEIDVRGNRLGGRIP-------  171 (566)
Q Consensus       103 ~~l~~L~~L~l~~~~~~~--~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~--~L~~L~l~~~~i~~~~~-------  171 (566)
                      .++++|++|++++|++++  .++..+..+++|+.|+|++|.+.+.  ..+..+.  +|++|++++|.+.+..|       
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~  244 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS  244 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence            356778888888877775  2334556777888888888877642  2233333  78888888888875444       


Q ss_pred             cccccCCcccEee
Q 046712          172 STISHVRNLISFN  184 (566)
Q Consensus       172 ~~l~~l~~L~~L~  184 (566)
                      ..+..+++|+.|+
T Consensus       245 ~il~~~P~L~~LD  257 (267)
T 3rw6_A          245 AIRERFPKLLRLD  257 (267)
T ss_dssp             HHHHHCTTCCEES
T ss_pred             HHHHHCcccCeEC
Confidence            2356778888775

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.28  E-value=1.8e-07  Score=78.69  Aligned_cols=82  Identities=10%  Similarity=0.119  Sum_probs=35.6

Q ss_pred             CCCEEeCCCCcCCCcCccccccCCCCcEEEcCCCc-CCCCcchhccCC----CCCCEEeccccc-CCCCCCccccCCCCC
Q 046712           83 RLQNLTLTNNYFLGKILTDLSHCSNLMKFEASNNK-LEGEIPVKISNL----LMLQILNIAENH-LKGQLPASIGNLSAL  156 (566)
Q Consensus        83 ~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~l~~l----~~L~~L~l~~~~-~~~~~~~~~~~l~~L  156 (566)
                      +|+.||+++|.++......+..+++|++|++++|. +++.....+..+    ++|++|++++|. +++.....+..+++|
T Consensus        62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L  141 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL  141 (176)
T ss_dssp             CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred             eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence            44444444444444333444444445555554442 333222233332    245555555443 333333334445555


Q ss_pred             CEEEccCC
Q 046712          157 QEIDVRGN  164 (566)
Q Consensus       157 ~~L~l~~~  164 (566)
                      ++|++++|
T Consensus       142 ~~L~L~~c  149 (176)
T 3e4g_A          142 KYLFLSDL  149 (176)
T ss_dssp             CEEEEESC
T ss_pred             CEEECCCC
Confidence            55555554

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.16  E-value=1.5e-06  Score=79.08  Aligned_cols=80  Identities=25%  Similarity=0.377  Sum_probs=57.9

Q ss_pred             cCCCCCCEEeCccccccc--cCCccccCCCCCcEEeCCCCcccccCCcCCcCCC--CCCEEeCCCCccccccC-------
Q 046712          471 GNLKNLVSLDISSNMFSG--EIPTTLGGCTSLEYLGMQDNSFTISIPSTLSSLK--SITELDLSRNNLSGHIP-------  539 (566)
Q Consensus       471 ~~~~~L~~L~ls~~~l~~--~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~--~L~~L~l~~n~~~~~~~-------  539 (566)
                      ..+++|++|+|++|.+.+  .++..+..+++|+.|+|++|.+.+.  +.+..+.  +|++|+|++|++.+..|       
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~  244 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS  244 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence            356788888888888875  3345566788888888888888753  2333333  88899999998876554       


Q ss_pred             ccccccccCceee
Q 046712          540 QYLENLSFLLFLN  552 (566)
Q Consensus       540 ~~l~~l~~L~~L~  552 (566)
                      ..+..+|+|+.||
T Consensus       245 ~il~~~P~L~~LD  257 (267)
T 3rw6_A          245 AIRERFPKLLRLD  257 (267)
T ss_dssp             HHHHHCTTCCEES
T ss_pred             HHHHHCcccCeEC
Confidence            3467788888776

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.48  E-value=1.5e-05  Score=68.27  Aligned_cols=114  Identities=11%  Similarity=0.090  Sum_probs=65.6

Q ss_pred             ccCcCCCCCCEEecCCC-ccccc----CCcccCCCCCCCEEeCCCCcCCCcCccc----cccCCCCcEEEcCCCcCCCC-
Q 046712           52 PFVGNLNFLRSINLPNN-SFRGK----IPHEVGNLFRLQNLTLTNNYFLGKILTD----LSHCSNLMKFEASNNKLEGE-  121 (566)
Q Consensus        52 ~~~~~l~~L~~L~ls~~-~l~~~----~~~~~~~l~~L~~L~l~~~~l~~~~~~~----~~~l~~L~~L~l~~~~~~~~-  121 (566)
                      ..+.+-+.|++|+++++ .+.+.    +.+++..-+.|+.|+|++|.+.......    +...+.|++|+|++|.|.+. 
T Consensus        35 ~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~G  114 (197)
T 1pgv_A           35 RLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPEL  114 (197)
T ss_dssp             HHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHH
T ss_pred             HHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHH
Confidence            34455677888888875 66543    3445666677888888888776544333    33557777777777777642 


Q ss_pred             ---cchhccCCCCCCEEecccccC---CC----CCCccccCCCCCCEEEccCCc
Q 046712          122 ---IPVKISNLLMLQILNIAENHL---KG----QLPASIGNLSALQEIDVRGNR  165 (566)
Q Consensus       122 ---~~~~l~~l~~L~~L~l~~~~~---~~----~~~~~~~~l~~L~~L~l~~~~  165 (566)
                         +...+..-+.|++|+++++..   ..    .+...+..-+.|+.|+++.+.
T Consensus       115 a~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~  168 (197)
T 1pgv_A          115 LARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS  168 (197)
T ss_dssp             HHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred             HHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence               223344555667776664422   21    122333444555556555443

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.19  E-value=0.00017  Score=61.83  Aligned_cols=40  Identities=25%  Similarity=0.180  Sum_probs=19.2

Q ss_pred             hhhccCCCCeecccCCccccc----ccccccCCCCCCEEEccCC
Q 046712          348 VIANLVNLNALGVESNQLAGT----IPLAIGELKSIQILFLNEN  387 (566)
Q Consensus       348 ~~~~l~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~n  387 (566)
                      .+.....|++|+|+.|.+...    +.+++..-+.|++|+++++
T Consensus        93 aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~  136 (197)
T 1pgv_A           93 LIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQ  136 (197)
T ss_dssp             HHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred             HHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCC
Confidence            344445555555555555432    1223334445555555543

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.00  E-value=0.0013  Score=52.42  Aligned_cols=57  Identities=19%  Similarity=0.273  Sum_probs=43.9

Q ss_pred             CEEeCcccccc-ccCCccccCCCCCcEEeCCCCcccccCCcCCcCCCCCCEEeCCCCccc
Q 046712          477 VSLDISSNMFS-GEIPTTLGGCTSLEYLGMQDNSFTISIPSTLSSLKSITELDLSRNNLS  535 (566)
Q Consensus       477 ~~L~ls~~~l~-~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~  535 (566)
                      ..++.+++.++ ..+|..+.  ++|++|+|++|.++...++.|..+++|+.|+|++|++.
T Consensus        11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            47888888875 34565443  57899999999988666667788899999999998876

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.50  E-value=0.0049  Score=49.14  Aligned_cols=57  Identities=19%  Similarity=0.264  Sum_probs=44.6

Q ss_pred             eEEEccCCccc-ccCCcCccCCCCCCEEeCccccccccCCccccCCCCCcEEeCCCCccc
Q 046712          453 VLLDLSDNLLS-GHFPTKVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFT  511 (566)
Q Consensus       453 ~~L~l~~~~~~-~~~~~~~~~~~~L~~L~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~~~  511 (566)
                      ..++.++..++ ...|..+.  ++|+.|+|++|.++...+..|..+++|++|+|.+|.+.
T Consensus        11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            46788888776 24444333  57999999999999666678899999999999999775

>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}

Probab=80.38  E-value=3.7  Score=30.40  Aligned_cols=47  Identities=19%  Similarity=0.188  Sum_probs=25.0

Q ss_pred             CccccccCccCcCCCCCCEEecCCCcccccCCcccCCCCCCCEEeCCC
Q 046712           44 QSVGGVLSPFVGNLNFLRSINLPNNSFRGKIPHEVGNLFRLQNLTLTN   91 (566)
Q Consensus        44 ~~i~~~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~l~~   91 (566)
                      ..++.+-..+|..|+.|+.+.+-.+ ++.....+|.++.+|+.+.+.+
T Consensus         6 ~~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~   52 (100)
T 2lz0_A            6 EPVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG   52 (100)
T ss_dssp             CCCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred             CccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence            3455555555666666666666544 2223444555555665555544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	566
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	3e-22
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	4e-12
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-10
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-09
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	6e-07
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-17
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	6e-13
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-10
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	8e-08
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	0.002
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	2e-15
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	8e-11
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	2e-10
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	4e-10
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	1e-09
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	2e-09
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	5e-15
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-14
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	6e-14
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-13
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-09
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	3e-06
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	2e-08
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	2e-06
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	4e-05
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	1e-04
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	0.001
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	3e-08
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	5e-06
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	3e-04
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	4e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	7e-07
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	3e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	5e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.001
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	9e-07
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	4e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	7e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	9e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	5e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	6e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.004
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	2e-06
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	5e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	0.001
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	5e-06
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	5e-05
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	6e-04
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	4e-05
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	2e-04
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	0.001
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	0.002
d2omxa2	199	c.10.2.1 (A:37-235) Internalin B {Listeria monocyt	0.002
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	0.002

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 95.2 bits (235), Expect = 3e-22
 Identities = 69/296 (23%), Positives = 109/296 (36%), Gaps = 12/296 (4%)

Query: 2   KSQLQDPLGVTSSWNNSINLCQ--WTGVTC--GHRRQRVTGLDLRHQSVGGV--LSPFVG 55
           K  L +P    SSW  + + C   W GV C    +  RV  LDL   ++     +   + 
Sbjct: 15  KKDLGNP-TTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLA 73

Query: 56  NLNFLRSINLPNN-SFRGKIPHEVGNLFRLQNLTLTNNYFLGKILTDLSHCSNLMKFEAS 114
           NL +L  + +    +  G IP  +  L +L  L +T+    G I   LS    L+  + S
Sbjct: 74  NLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFS 133

Query: 115 NNKLEGEIPVKISNLLMLQILNIAENHLKGQLPASIGNLSALQE-IDVRGNRLGGRIPST 173
            N L G +P  IS+L  L  +    N + G +P S G+ S L   + +  NRL       
Sbjct: 134 YNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRL--TGKIP 191

Query: 174 ISHVRNLISFNVAYNQFSGMIPPIYNISSLQYIFIHTNRFHGSVPLDNGVNLPNLRYFSI 233
            +     ++F             +   S      IH  +   +  L       NL    +
Sbjct: 192 PTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDL 251

Query: 234 SGNNLTGSLQDSLSNATNLQGLEINRNLFSGKVSINFSRLQNLSRLNLGENNLGTG 289
             N + G+L   L+    L  L ++ N   G++      LQ         N    G
Sbjct: 252 RNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYANNKCLCG 306

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 65.2 bits (157), Expect = 4e-12
 Identities = 62/266 (23%), Positives = 105/266 (39%), Gaps = 5/266 (1%)

Query: 301 TNCTKLEVLDLHSNRFGGV--LPFSLANLSTTMTEIAIGSNQISDTIPDVIANLVNLNAL 358
           T   ++  LDL          +P SLANL         G N +   IP  IA L  L+ L
Sbjct: 47  TQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYL 106

Query: 359 GVESNQLAGTIPLAIGELKSIQILFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIP 418
            +    ++G IP  + ++K++  L  + N L GT+P S+ +L  L  +  + N + G IP
Sbjct: 107 YITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIP 166

Query: 419 PSNGNCQNLILLTTRKNKLSGIVPRQLLRIITLSVLLDLSDNLLSGHFPTKVGNLKNLVS 478
            S G+   L    T     + +  +       L++        +     + +        
Sbjct: 167 DSYGSFSKLFTSMTISR--NRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQ 224

Query: 479 LDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTISIPSTLSSLKSITELDLSRNNLSGHI 538
               +          +G   +L  L +++N    ++P  L+ LK +  L++S NNL G I
Sbjct: 225 KIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEI 284

Query: 539 PQYLENLSFLLFLNMSYNHFEGKVPI 564
           PQ   NL        + N      P+
Sbjct: 285 PQ-GGNLQRFDVSAYANNKCLCGSPL 309

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 60.1 bits (144), Expect = 2e-10
 Identities = 55/271 (20%), Positives = 91/271 (33%), Gaps = 7/271 (2%)

Query: 269 NFSRLQNLSRLNLGENNLGTGTTNDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLS 328
             ++   ++ L+L   NL           + L N   L  L +                 
Sbjct: 45  TDTQTYRVNNLDLSGLNL----PKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKL 100

Query: 329 TTMTEIAIGSNQISDTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSIQILFLNENF 388
           T +  + I    +S  IPD ++ +  L  L    N L+GT+P +I  L ++  +  + N 
Sbjct: 101 TQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNR 160

Query: 389 LRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSNGNCQNLILLTTRKNKLSGIVPRQLLRI 448
           + G IP S G+ + L   +    N      P      NL       ++        +L  
Sbjct: 161 ISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLA--FVDLSRNMLEGDASVLFG 218

Query: 449 ITLSVLLDLSDNLLSGHFPTKVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDN 508
              +                KVG  KNL  LD+ +N   G +P  L     L  L +  N
Sbjct: 219 SDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFN 278

Query: 509 SFTISIPSTLSSLKSITELDLSRNNLSGHIP 539
           +    IP    +L+       + N      P
Sbjct: 279 NLCGEIPQ-GGNLQRFDVSAYANNKCLCGSP 308

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 56.7 bits (135), Expect = 2e-09
 Identities = 39/205 (19%), Positives = 68/205 (33%), Gaps = 1/205 (0%)

Query: 15  WNNSINLCQWTGVTCGHRRQRVTGLDLRHQSVGGVLSPFVGNLNFLRSINLPNNSFRGKI 74
              +             + + +  LD  + ++ G L P + +L  L  I    N   G I
Sbjct: 106 LYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAI 165

Query: 75  PHEVGNLFRLQNLTLTNNYFLGKILTDLSHCSNLMKFEASNNKLEGEIPVKISNLLMLQI 134
           P   G+  +L      +   L   +       NL   + S N         +        
Sbjct: 166 PDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNM-LEGDASVLFGSDKNTQ 224

Query: 135 LNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVAYNQFSGMI 194
                 +        +G    L  +D+R NR+ G +P  ++ ++ L S NV++N   G I
Sbjct: 225 KIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEI 284

Query: 195 PPIYNISSLQYIFIHTNRFHGSVPL 219
           P   N+          N+     PL
Sbjct: 285 PQGGNLQRFDVSAYANNKCLCGSPL 309

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 49.4 bits (116), Expect = 6e-07
 Identities = 51/269 (18%), Positives = 89/269 (33%), Gaps = 12/269 (4%)

Query: 172 STISHVRNLISFNVAYNQFSGMIPP---IYNISSLQYIFIHTNRFHGSVPLDNGVNLPNL 228
            T +    + + +++        P    + N+  L +++I                L  L
Sbjct: 44  DTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQL 103

Query: 229 RYFSISGNNLTGSLQDSLSNATNLQGLEINRNLFSGKVSINFSRLQNLSRLNLGENNLGT 288
            Y  I+  N++G++ D LS    L  L+ + N  SG +  + S L NL  +    N +  
Sbjct: 104 HYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISG 163

Query: 289 GTTNDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQISDTIPDV 348
              +     + L     +    L                +         S  + +    V
Sbjct: 164 AIPDSYGSFSKLFTSMTISRNRLTGKIPP--------TFANLNLAFVDLSRNMLEGDASV 215

Query: 349 IANLVNLNALGVESNQLAGTIPLAIGELKSIQILFLNENFLRGTIPSSLGNLTLLTQLIL 408
           +            +          +G  K++  L L  N + GT+P  L  L  L  L +
Sbjct: 216 LFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNV 275

Query: 409 EVNNLQGKIPPSNGNCQNLILLTTRKNKL 437
             NNL G+IP   GN Q   +     NK 
Sbjct: 276 SFNNLCGEIPQG-GNLQRFDVSAYANNKC 303

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 82.0 bits (201), Expect = 2e-17
 Identities = 81/344 (23%), Positives = 126/344 (36%), Gaps = 25/344 (7%)

Query: 219 LDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINRNLFSGKVSINFSRLQNLSR 278
           +D    L NL   + S N LT      L N T L  + +N N  +    +          
Sbjct: 59  IDGVEYLNNLTQINFSNNQLTDI--TPLKNLTKLVDILMNNNQIADITPLANLTNLTGLT 116

Query: 279 LNLGENNLGTGTTNDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLAN------LSTTMT 332
           L   +        N  +   L  +   +  +   S                   L+   T
Sbjct: 117 LFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTT 176

Query: 333 EIAIGSNQISDTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSIQILFLNENFLRGT 392
              +  +    +   V+A L NL +L   +NQ++   PL I    ++  L LN N L+  
Sbjct: 177 LERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGIL--TNLDELSLNGNQLKD- 233

Query: 393 IPSSLGNLTLLTQLILEVNNLQGKIPPSNGNCQNLILLTTRKNKLSGIVPRQLLRIITLS 452
              +L +LT LT L L  N +    P S      L  L    N++S I P   L  +T  
Sbjct: 234 -IGTLASLTNLTDLDLANNQISNLAPLSG--LTKLTELKLGANQISNISPLAGLTALTNL 290

Query: 453 VLLDLSDNLLSGHFPTKVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTI 512
                  N       + + NLKNL  L +  N  S   P  +   T L+ L   +N   +
Sbjct: 291 -----ELNENQLEDISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNK--V 341

Query: 513 SIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLLFLNMSYN 556
           S  S+L++L +I  L    N +S   P  L NL+ +  L ++  
Sbjct: 342 SDVSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 68.1 bits (165), Expect = 6e-13
 Identities = 73/393 (18%), Positives = 130/393 (33%), Gaps = 42/393 (10%)

Query: 56  NLNFLRSINLPNNSFRGKIPHEVGNLFRLQNLTLTNNYFLGKILTDLSHCSNLMKFEASN 115
            L       L   +    +     +L ++  L         K +  + + +NL +   SN
Sbjct: 20  ALAEKMKTVLGKTNVTDTVSQT--DLDQVTTLQADRLGI--KSIDGVEYLNNLTQINFSN 75

Query: 116 NKLEGEIPVKISNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTIS 175
           N+L    P  + NL  L  + +  N +    P +         +          + +  +
Sbjct: 76  NQLTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTN 133

Query: 176 HVRNLISFN-------------VAYNQFSGMIPPIYNISSLQYIFIHTNRFHGSVPLDNG 222
             R  +S N             +    F   +  +  +++L  +       +    +   
Sbjct: 134 LNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVL 193

Query: 223 VNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINRNLFSGKVSINFSRLQNLSRLNLG 282
             L NL     + N ++      L   TNL  L +N N          + L NL+ L+L 
Sbjct: 194 AKLTNLESLIATNNQISDIT--PLGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLA 249

Query: 283 ENNLGTGTTNDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQIS 342
            N +          +  L+  TKL  L L +N+   + P +     T +       N+  
Sbjct: 250 NNQISN--------LAPLSGLTKLTELKLGANQISNISPLAGLTALTNLEL-----NENQ 296

Query: 343 DTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSIQILFLNENFLRGTIPSSLGNLTL 402
                 I+NL NL  L +  N ++   P  +  L  +Q LF   N +  +  SSL NLT 
Sbjct: 297 LEDISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKV--SDVSSLANLTN 352

Query: 403 LTQLILEVNNLQGKIPPSNGNCQNLILLTTRKN 435
           +  L    N +    P    N   +  L     
Sbjct: 353 INWLSAGHNQISDLTPL--ANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 61.6 bits (148), Expect = 1e-10
 Identities = 75/369 (20%), Positives = 131/369 (35%), Gaps = 44/369 (11%)

Query: 34  QRVTGLDLRHQSVGGVLSPFVGNLNFLRSINLPNNSFRGKIPHEVGNLFRLQNLTLTNNY 93
            +VT L      +  +    V  LN L  IN  NN      P  + NL +L ++ + NN 
Sbjct: 44  DQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQ 99

Query: 94  FLGKILTDLSHCSNLMKFEASNNKLEGEIPVKISNLLMLQILN---------------IA 138
                          +    +       +    +   +    N                 
Sbjct: 100 IADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQL 159

Query: 139 ENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVAYNQFSGMIPPIY 198
               +      + NL+ L+ +D+  N+      S ++ + NL S     NQ S  I P+ 
Sbjct: 160 SFGNQVTDLKPLANLTTLERLDISSNK--VSDISVLAKLTNLESLIATNNQISD-ITPLG 216

Query: 199 NISSLQYIFIHTNRFHGSVPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEIN 258
            +++L  + ++ N+      +    +L NL    ++ N ++      LS  T L  L++ 
Sbjct: 217 ILTNLDELSLNGNQLKD---IGTLASLTNLTDLDLANNQISNLA--PLSGLTKLTELKLG 271

Query: 259 RNLFSGKVSINFSRLQNLSRLNLGENNLGTGTTNDLDFITLLTNCTKLEVLDLHSNRFGG 318
            N  S    +            L          N L+ I+ ++N   L  L L+ N    
Sbjct: 272 ANQISNISPLA----------GLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISD 321

Query: 319 VLPFSLANLSTTMTEIAIGSNQISDTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKS 378
           + P S     T +  +   +N++SD     +ANL N+N L    NQ++   PL    L  
Sbjct: 322 ISPVSSL---TKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQISDLTPL--ANLTR 374

Query: 379 IQILFLNEN 387
           I  L LN+ 
Sbjct: 375 ITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 52.3 bits (124), Expect = 8e-08
 Identities = 68/346 (19%), Positives = 114/346 (32%), Gaps = 53/346 (15%)

Query: 247 SNATNLQGLEINRNLFSGKVSINFSRLQNLSRLNLGENNLGTGTTNDLDFITLLTNCTKL 306
           +         + +   +  VS   + L  ++ L      +       +D +  L N   L
Sbjct: 19  TALAEKMKTVLGKTNVTDTVSQ--TDLDQVTTLQADRLGI-----KSIDGVEYLNN---L 68

Query: 307 EVLDLHSNRFGGVLPFS-LANLSTTMTEIAIGSNQISDTIPDVIANLVNLNALGVESNQL 365
             ++  +N+   + P   L  L   +      ++         +  L   N    + + L
Sbjct: 69  TQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPL 128

Query: 366 AGTIPLAIGELKSIQILFL-----------NENFLRGTIPSSLGNLTLLTQLILEVNNLQ 414
                L   EL S  I  +                + T    L NLT L +L +  N + 
Sbjct: 129 KNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVS 188

Query: 415 GKIPPSNGNCQNLILLTTRKNKLSGIVPRQLLRIITLSVLLDLSDNLLSGHFPTKVGNLK 474
                      NL  L    N++S I P  +L  +     L L+ N L       + +L 
Sbjct: 189 --DISVLAKLTNLESLIATNNQISDITPLGILTNLD---ELSLNGNQLKD--IGTLASLT 241

Query: 475 NLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTISIPSTLSS-------------- 520
           NL  LD+++N  S   P  L G T L  L +  N  +   P    +              
Sbjct: 242 NLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLED 299

Query: 521 ------LKSITELDLSRNNLSGHIPQYLENLSFLLFLNMSYNHFEG 560
                 LK++T L L  NN+S   P  + +L+ L  L  + N    
Sbjct: 300 ISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD 343

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.1 bits (87), Expect = 0.002
 Identities = 20/107 (18%), Positives = 44/107 (41%), Gaps = 6/107 (5%)

Query: 10  GVTSSWNNSINLCQWTGVTCGHRRQRVTGLDLRHQSVGGVLSPFVGNLNFLRSINLPNNS 69
           G+T+  N  +N  Q   ++     + +T L L   ++  +    V +L  L+ +   NN 
Sbjct: 283 GLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDI--SPVSSLTKLQRLFFANNK 340

Query: 70  FRGKIPHEVGNLFRLQNLTLTNNYFLGKILTDLSHCSNLMKFEASNN 116
                   + NL  +  L+  +N      LT L++ + + +   ++ 
Sbjct: 341 VSD--VSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQ 383

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.8 bits (182), Expect = 2e-15
 Identities = 49/257 (19%), Positives = 86/257 (33%), Gaps = 5/257 (1%)

Query: 304 TKLEVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQISDTIPDVIANLVNLNALGVESN 363
              + + LH NR   V   S              +              +       ++ 
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91

Query: 364 QLAGTIPLAIGELKSIQILFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSNGN 423
           QL    P     L  +  L L+   L+   P     L  L  L L+ N LQ     +  +
Sbjct: 92  QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRD 151

Query: 424 CQNLILLTTRKNKLSGIVPRQLLRIITLSVLLDLSDNLLSGHFPTKVGNLKNLVSLDISS 483
             NL  L    N++S +  R    + +L  L  L  N ++   P    +L  L++L + +
Sbjct: 152 LGNLTHLFLHGNRISSVPERAFRGLHSLDRL-LLHQNRVAHVHPHAFRDLGRLMTLYLFA 210

Query: 484 NMFSGEIPTTLGGCTSLEYLGMQDNSFTISIPSTLSSLKSITELDLSRNNLSGHIPQYLE 543
           N  S      L    +L+YL + DN +     +       + +   S + +   +PQ L 
Sbjct: 211 NNLSALPTEALAPLRALQYLRLNDNPWVCDCRA-RPLWAWLQKFRGSSSEVPCSLPQRLA 269

Query: 544 NLSFLLFLNMSYNHFEG 560
                    ++ N  +G
Sbjct: 270 GRD---LKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.0 bits (146), Expect = 8e-11
 Identities = 33/191 (17%), Positives = 60/191 (31%), Gaps = 6/191 (3%)

Query: 75  PHEVGNLFRLQNLTLTNNYFLGKILTDLSHCSNLMKFEASNNKLEGEIPVKISNLLMLQI 134
           P     L RL  L L                + L      +N L+        +L  L  
Sbjct: 98  PATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTH 157

Query: 135 LNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVAYNQFSGMI 194
           L +  N +      +   L +L  + +  NR+    P     +  L++  +  N  S + 
Sbjct: 158 LFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALP 217

Query: 195 PPIY-NISSLQYIFIHTNRFHGSVPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQ 253
                 + +LQY+ ++ N +              L+ F  S + +  SL   L+      
Sbjct: 218 TEALAPLRALQYLRLNDNPWVCDCRARP--LWAWLQKFRGSSSEVPCSLPQRLA---GRD 272

Query: 254 GLEINRNLFSG 264
              +  N   G
Sbjct: 273 LKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.8 bits (143), Expect = 2e-10
 Identities = 49/240 (20%), Positives = 82/240 (34%), Gaps = 3/240 (1%)

Query: 325 ANLSTTMTEIAIGSNQISDTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSIQILFL 384
             +      I +  N+IS           NL  L + SN LA     A   L  ++ L L
Sbjct: 28  VGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDL 87

Query: 385 NENFLRGTI-PSSLGNLTLLTQLILEVNNLQGKIPPSNGNCQNLILLTTRKNKLSGIVPR 443
           ++N    ++ P++   L  L  L L+   LQ   P        L  L  + N L  +   
Sbjct: 88  SDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDD 147

Query: 444 QLLRIITLSVLLDLSDNLLSGHFPTKVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYL 503
               +  L+ L  L  N +S         L +L  L +  N  +   P        L  L
Sbjct: 148 TFRDLGNLTHL-FLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTL 206

Query: 504 GMQDNSFTISIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLLFLNMSYNHFEGKVP 563
            +  N+ +      L+ L+++  L L+ N             ++L     S +     +P
Sbjct: 207 YLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRA-RPLWAWLQKFRGSSSEVPCSLP 265

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.7 bits (140), Expect = 4e-10
 Identities = 47/263 (17%), Positives = 84/263 (31%), Gaps = 11/263 (4%)

Query: 226 PNLRYFSISGNNLTGSLQDSLSNATNLQGLEINRNLFSGKVSINFSRLQNLSRLNLGENN 285
              +   + GN ++     S     NL  L ++ N+ +   +  F+ L  L +L+L +N 
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91

Query: 286 LGTGTTNDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQISDTI 345
                              +L  L L        L   L      +  + +  N +    
Sbjct: 92  QLRSVDPAT-----FHGLGRLHTLHL-DRCGLQELGPGLFRGLAALQYLYLQDNALQALP 145

Query: 346 PDVIANLVNLNALGVESNQLAGTIPLAIGELKSIQILFLNENFLRGTIPSSLGNLTLLTQ 405
            D   +L NL  L +  N+++     A   L S+  L L++N +    P +  +L  L  
Sbjct: 146 DDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMT 205

Query: 406 LILEVNNLQGKIPPSNGNCQNLILLTTRKNKLSGIVPRQLLRIITLSVLLDLSDNLLSGH 465
           L L  NNL      +    + L  L    N            +         S + +   
Sbjct: 206 LYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCR--ARPLWAWLQKFRGSSSEVPCS 263

Query: 466 FPTKVGNLKNLVSLDISSNMFSG 488
            P     L       +++N   G
Sbjct: 264 LP---QRLAGRDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.1 bits (136), Expect = 1e-09
 Identities = 47/247 (19%), Positives = 81/247 (32%), Gaps = 10/247 (4%)

Query: 84  LQNLTLTNNYFLGKILTDLSHCSNLMKFEASNNKLEGEIPVKISNLLMLQILNIAENHLK 143
            Q + L  N            C NL      +N L        + L +L+ L++++N   
Sbjct: 34  SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQL 93

Query: 144 GQL-PASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVAYNQFSGMIPP-IYNIS 201
             + PA+   L  L  + +    L    P     +  L    +  N    +      ++ 
Sbjct: 94  RSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLG 153

Query: 202 SLQYIFIHTNRFHGSVPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINRNL 261
           +L ++F+H NR    VP      L +L    +  N +      +  +   L  L +  N 
Sbjct: 154 NLTHLFLHGNRISS-VPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANN 212

Query: 262 FSGKVSINFSRLQNLSRLNLGENNLGTGTTNDLDFITLLTNCTKLEVLDLHSNRFGGVLP 321
            S   +   + L+ L  L L +N        D     L      L+     S+     LP
Sbjct: 213 LSALPTEALAPLRALQYLRLNDNPW----VCDCRARPLWAW---LQKFRGSSSEVPCSLP 265

Query: 322 FSLANLS 328
             LA   
Sbjct: 266 QRLAGRD 272

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.7 bits (135), Expect = 2e-09
 Identities = 39/191 (20%), Positives = 61/191 (31%), Gaps = 2/191 (1%)

Query: 368 TIPLAIGELKSIQILFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSNGNCQNL 427
            +P+ I    + Q +FL+ N +     +S      LT L L  N L      +      L
Sbjct: 25  AVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALL 82

Query: 428 ILLTTRKNKLSGIVPRQLLRIITLSVLLDLSDNLLSGHFPTKVGNLKNLVSLDISSNMFS 487
             L    N     V       +     L L    L    P     L  L  L +  N   
Sbjct: 83  EQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ 142

Query: 488 GEIPTTLGGCTSLEYLGMQDNSFTISIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSF 547
                T     +L +L +  N  +         L S+  L L +N ++   P    +L  
Sbjct: 143 ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGR 202

Query: 548 LLFLNMSYNHF 558
           L+ L +  N+ 
Sbjct: 203 LMTLYLFANNL 213

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 73.9 bits (180), Expect = 5e-15
 Identities = 42/184 (22%), Positives = 63/184 (34%), Gaps = 5/184 (2%)

Query: 377 KSIQILFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSNGNCQNLILLTTRKNK 436
               +L L  N +         NL  L  LIL  N +    P +      L  L   KN+
Sbjct: 31  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 90

Query: 437 LSGIVPRQLLRIITLSVLLDLSDNLLSGHFPTKVGNLKNLVSLDISSNMFSGEIPTTLGG 496
           L  +  +    +  L V  +    +    F     N   +V L  +    SG       G
Sbjct: 91  LKELPEKMPKTLQELRVHENEITKVRKSVFNGL--NQMIVVELGTNPLKSSGIENGAFQG 148

Query: 497 CTSLEYLGMQDNSFTISIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLLFLNMSYN 556
              L Y+ + D + T        SL   TEL L  N ++      L+ L+ L  L +S+N
Sbjct: 149 MKKLSYIRIADTNITTIPQGLPPSL---TELHLDGNKITKVDAASLKGLNNLAKLGLSFN 205

Query: 557 HFEG 560
               
Sbjct: 206 SISA 209

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 72.0 bits (175), Expect = 2e-14
 Identities = 50/262 (19%), Positives = 94/262 (35%), Gaps = 13/262 (4%)

Query: 304 TKLEVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQISDTIPDVIANLVNLNALGVESN 363
               +LDL +N+   +      NL   +  + + +N+IS   P   A LV L  L +  N
Sbjct: 31  PDTALLDLQNNKITEIKDGDFKNL-KNLHTLILINNKISKISPGAFAPLVKLERLYLSKN 89

Query: 364 QLAGTIPLAIGELKSIQILFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSNGN 423
           QL          L+ +++       +R ++ + L  + ++ +L        G    +   
Sbjct: 90  QLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVV-ELGTNPLKSSGIENGAFQG 148

Query: 424 CQNLILLTTRKNKLSGIVPRQLLRIITLSVLLDLSDNLLSGHFPTKVGNLKNLVSLDISS 483
            + L  +      ++ I       +  L     L  N ++      +  L NL  L +S 
Sbjct: 149 MKKLSYIRIADTNITTIPQGLPPSLTEL----HLDGNKITKVDAASLKGLNNLAKLGLSF 204

Query: 484 NMFSGEIPTTLGGCTSLEYLGMQDNSFTISIPSTLSSLKSITELDLSRNNLSG------H 537
           N  S     +L     L  L + +N     +P  L+  K I  + L  NN+S        
Sbjct: 205 NSISAVDNGSLANTPHLRELHLNNNKLVK-VPGGLADHKYIQVVYLHNNNISAIGSNDFC 263

Query: 538 IPQYLENLSFLLFLNMSYNHFE 559
            P Y    +    +++  N  +
Sbjct: 264 PPGYNTKKASYSGVSLFSNPVQ 285

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 70.5 bits (171), Expect = 6e-14
 Identities = 42/303 (13%), Positives = 85/303 (28%), Gaps = 38/303 (12%)

Query: 22  CQWTGVTCGHRR---------QRVTGLDLRHQSVGGVLSPFVGNLNFLRSINLPNNSFRG 72
           C    V C                  LDL++  +  +      NL  L ++ L NN    
Sbjct: 10  CHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISK 69

Query: 73  KIPHEVGNLFRLQNLTLTNNYFLGKILTDLSHCSNLMKFEASNNKLEGEIPVKISNLLML 132
             P     L +L+ L L+ N               L   E    K+   +   ++ ++++
Sbjct: 70  ISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVV 129

Query: 133 QILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVAYNQFSG 192
           ++         G    +   +  L  I +    +            +L   ++  N+ + 
Sbjct: 130 ELGTN-PLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPP---SLTELHLDGNKITK 185

Query: 193 MIPPIYNISSLQYIFIHTNRFHGSVPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNL 252
           +        +       +     +V   +  N P+LR   ++ N L              
Sbjct: 186 VDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPG--------- 236

Query: 253 QGLEINRNLFSGKVSINFSRLQNLSRLNLGENNLGTGTTNDLDFITLLTNCTKLEVLDLH 312
                             +  + +  + L  NN+    +ND       T       + L 
Sbjct: 237 ----------------GLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLF 280

Query: 313 SNR 315
           SN 
Sbjct: 281 SNP 283

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 68.9 bits (167), Expect = 2e-13
 Identities = 49/236 (20%), Positives = 100/236 (42%), Gaps = 6/236 (2%)

Query: 325 ANLSTTMTEIAIGSNQISDTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSIQILFL 384
            +L      + + +N+I++       NL NL+ L + +N+++   P A   L  ++ L+L
Sbjct: 27  KDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL 86

Query: 385 NENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSNGNCQNLILLTTRKNKLSGIVPRQ 444
           ++N L+         L  L     E+  ++  +  +  N   ++ L T   K SGI    
Sbjct: 87  SKNQLKELPEKMPKTLQELRVHENEITKVRKSVF-NGLNQMIVVELGTNPLKSSGIENGA 145

Query: 445 LLRIITLSVLLDLSDNLLSGHFPTKVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLG 504
              +  LS  + ++D  ++       G   +L  L +  N  +     +L G  +L  LG
Sbjct: 146 FQGMKKLS-YIRIADTNITTIPQ---GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLG 201

Query: 505 MQDNSFTISIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLLFLNMSYNHFEG 560
           +  NS +     +L++   + EL L+ N L   +P  L +  ++  + +  N+   
Sbjct: 202 LSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISA 256

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 57.4 bits (137), Expect = 1e-09
 Identities = 46/256 (17%), Positives = 84/256 (32%), Gaps = 22/256 (8%)

Query: 226 PNLRYFSISGNNLTGSLQDSLSNATNLQGLEINRNLFSGKVSINFSRLQNLSRLNLGENN 285
           P+     +  N +T        N  NL  L +  N  S      F+ L  L RL L +N 
Sbjct: 31  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 90

Query: 286 LGTGTTNDLDFITLLT-----------------NCTKLEVLDLHSNRFGGVLPFSLANLS 328
           L          +  L                  N   +  L  +  +  G+   +   + 
Sbjct: 91  LKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGM- 149

Query: 329 TTMTEIAIGSNQISDTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSIQILFLNENF 388
             ++ I I    I+     +  +L  L+   ++ N++      ++  L ++  L L+ N 
Sbjct: 150 KKLSYIRIADTNITTIPQGLPPSLTELH---LDGNKITKVDAASLKGLNNLAKLGLSFNS 206

Query: 389 LRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSNGNCQNLILLTTRKNKLSGIVPRQLLRI 448
           +      SL N   L +L L  N L  K+P    + + + ++    N +S I        
Sbjct: 207 ISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPP 265

Query: 449 ITLSVLLDLSDNLLSG 464
              +     S   L  
Sbjct: 266 GYNTKKASYSGVSLFS 281

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 47.0 bits (110), Expect = 3e-06
 Identities = 26/144 (18%), Positives = 46/144 (31%), Gaps = 5/144 (3%)

Query: 415 GKIPPSNGNCQNLILLTTRKNKLSGIVPRQLLRIITLSVLLDLSDNLLSGHFPTKVGNLK 474
           G + P    C   ++  +        VP+ L     L   LDL +N ++        NLK
Sbjct: 1   GPVCPFRCQCHLRVVQCSDLGLEK--VPKDLPPDTAL---LDLQNNKITEIKDGDFKNLK 55

Query: 475 NLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTISIPSTLSSLKSITELDLSRNNL 534
           NL +L + +N  S   P        LE L +  N           +L+ +   +     +
Sbjct: 56  NLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKV 115

Query: 535 SGHIPQYLENLSFLLFLNMSYNHF 558
              +   L  +  +          
Sbjct: 116 RKSVFNGLNQMIVVELGTNPLKSS 139

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.2 bits (126), Expect = 2e-08
 Identities = 47/191 (24%), Positives = 75/191 (39%), Gaps = 7/191 (3%)

Query: 368 TIPLAIGELKSIQILFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSNGNCQNL 427
            +P  +   K   IL L+EN L     ++L   T LTQL L  +  +      +G    L
Sbjct: 24  ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNL--DRAELTKLQVDGTLPVL 79

Query: 428 ILLTTRKNKLSGIVPRQLLRIITLSVLLDLSDNLLSGHFPTKVGNLKNLVSLDISSNMFS 487
             L    N+L  +      + +    +LD+S N L+      +  L  L  L +  N   
Sbjct: 80  GTLDLSHNQLQSLPLLG--QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK 137

Query: 488 GEIPTTLGGCTSLEYLGMQDNSFTISIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSF 547
              P  L     LE L + +N+ T      L+ L+++  L L  N+L   IP+       
Sbjct: 138 TLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHL 196

Query: 548 LLFLNMSYNHF 558
           L F  +  N +
Sbjct: 197 LPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.0 bits (110), Expect = 2e-06
 Identities = 40/216 (18%), Positives = 81/216 (37%), Gaps = 13/216 (6%)

Query: 101 DLSHCSNLMKFEASNNKLEGEIPVKISNLLMLQILNIAENHLKGQLPASIGNLSALQEID 160
           ++S  ++ ++       L   +P  +       IL+++EN L     A++   + L +++
Sbjct: 5   EVSKVASHLEVNCDKRNLT-ALPPDLPKDT--TILHLSENLLYTFSLATLMPYTRLTQLN 61

Query: 161 VRGNRLGGRIPSTISHVRNLISFNVAYNQFSGMIPPIYNISSLQYIFIHTNRFHGSVPLD 220
           +               +  L + ++++NQ   +      + +L  + +  NR    +PL 
Sbjct: 62  LDRAE--LTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTS-LPLG 118

Query: 221 NGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINRNLFSGKVSINFSRLQNLSRLN 280
               L  L+   + GN L       L+    L+ L +  N  +   +   + L+NL  L 
Sbjct: 119 ALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLL 178

Query: 281 LGENNLGTGTTNDLDFITLLTNCTKLEVLDLHSNRF 316
           L EN+L T                 L    LH N +
Sbjct: 179 LQENSLYTIPKG-------FFGSHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.2 bits (100), Expect = 4e-05
 Identities = 38/189 (20%), Positives = 58/189 (30%), Gaps = 11/189 (5%)

Query: 226 PNLRYFSISGNNLTGSLQDSLSNATNLQGLEINRNLFSGKVSINFSRLQNLSRLNLGENN 285
            +     +S N L      +L   T L  L ++R             L  L  L+L  N 
Sbjct: 31  KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDR--AELTKLQVDGTLPVLGTLDLSHNQ 88

Query: 286 LGTGTTNDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQISDTI 345
           L +          L             S      LP         + E+ +  N++    
Sbjct: 89  LQSLPLLGQTLPALTVLD--------VSFNRLTSLPLGALRGLGELQELYLKGNELKTLP 140

Query: 346 PDVIANLVNLNALGVESNQLAGTIPLAIGELKSIQILFLNENFLRGTIPSSLGNLTLLTQ 405
           P ++     L  L + +N L       +  L+++  L L EN L  TIP       LL  
Sbjct: 141 PGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPF 199

Query: 406 LILEVNNLQ 414
             L  N   
Sbjct: 200 AFLHGNPWL 208

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.6 bits (96), Expect = 1e-04
 Identities = 29/179 (16%), Positives = 55/179 (30%), Gaps = 3/179 (1%)

Query: 36  VTGLDLRHQSVGGVLSPFVGNLNFLRSINLPNNSFRGKIPHEVGNLFRLQNLTLTNNYFL 95
            T L L    +       +     L  +NL                  +      ++  L
Sbjct: 33  TTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD---GTLPVLGTLDLSHNQL 89

Query: 96  GKILTDLSHCSNLMKFEASNNKLEGEIPVKISNLLMLQILNIAENHLKGQLPASIGNLSA 155
             +         L   + S N+L       +  L  LQ L +  N LK   P  +     
Sbjct: 90  QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPK 149

Query: 156 LQEIDVRGNRLGGRIPSTISHVRNLISFNVAYNQFSGMIPPIYNISSLQYIFIHTNRFH 214
           L+++ +  N L       ++ + NL +  +  N    +    +    L + F+H N + 
Sbjct: 150 LEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWL 208

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.5 bits (88), Expect = 0.001
 Identities = 15/62 (24%), Positives = 21/62 (33%), Gaps = 3/62 (4%)

Query: 497 CTSLEYLGMQDNSFTISIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLLFLNMSYN 556
             S   +     + T ++P  L   K  T L LS N L       L   + L  LN+   
Sbjct: 9   VASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA 65

Query: 557 HF 558
             
Sbjct: 66  EL 67

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.2 bits (126), Expect = 3e-08
 Identities = 42/280 (15%), Positives = 92/280 (32%), Gaps = 7/280 (2%)

Query: 157 QEIDVRGNRLGGRIPSTISHVRNLISFNVAYNQFSGMIPPIYNISSLQYIFIHTNRFHGS 216
           Q +D+ G  L   +   +   + +I+F    +     +   ++   +Q++ +  +    S
Sbjct: 3   QTLDLTGKNLHPDVTGRLLS-QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVS 61

Query: 217 VPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEI--NRNLFSGKVSINFSRLQ 274
                      L+  S+ G  L+  + ++L+  +NL  L +          +    S   
Sbjct: 62  TLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCS 121

Query: 275 NLSRLNLGENNLGTGTTNDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSTTMTEI 334
            L  LNL      T     +    +    T+L +     N     L   +      +   
Sbjct: 122 RLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLD 181

Query: 335 AIGSNQISDTIPDVIANLVNLNALGVES-NQLAGTIPLAIGELKSIQILFLNENFLRGTI 393
              S  + +        L  L  L +     +     L +GE+ +++ L +      GT+
Sbjct: 182 LSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTL 241

Query: 394 PSSLGNLTLLTQLILEVNNLQGKIPPSNGNCQNLILLTTR 433
                    L  L +  ++      P+ GN +N  +   +
Sbjct: 242 QLLKEA---LPHLQINCSHFTTIARPTIGNKKNQEIWGIK 278

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.3 bits (108), Expect = 5e-06
 Identities = 39/251 (15%), Positives = 91/251 (36%), Gaps = 13/251 (5%)

Query: 37  TGLDLRHQSVGGVLSPFVGNLNFLRSINLPNNSFRGKIPHEVGNLFRLQNLTLTNNYFLG 96
             LDL  +++   ++  + +   + +   P +     +  E  + FR+Q++ L+N+    
Sbjct: 3   QTLDLTGKNLHPDVTGRLLSQG-VIAFRCPRSFMDQPLA-EHFSPFRVQHMDLSNSVIEV 60

Query: 97  KILTD-LSHCSNLMKFEASNNKLEGEIPVKISNLLMLQILNIA--ENHLKGQLPASIGNL 153
             L   LS CS L        +L   I   ++    L  LN++      +  L   + + 
Sbjct: 61  STLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSC 120

Query: 154 SALQEIDVRGNRLGGRIPSTI-------SHVRNLISFNVAYNQFSGMIPPIYNISSLQYI 206
           S L E+++            +       +  +  +S      Q S +   +    +L ++
Sbjct: 121 SRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHL 180

Query: 207 FIHTNRFHGSVPLDNGVNLPNLRYFSISG-NNLTGSLQDSLSNATNLQGLEINRNLFSGK 265
            +  +    +        L  L++ S+S   ++       L     L+ L++   +  G 
Sbjct: 181 DLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGT 240

Query: 266 VSINFSRLQNL 276
           + +    L +L
Sbjct: 241 LQLLKEALPHL 251

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.5 bits (93), Expect = 3e-04
 Identities = 41/277 (14%), Positives = 82/277 (29%), Gaps = 22/277 (7%)

Query: 278 RLNLGENNLGTGTTNDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSTTMTEIAIG 337
            L+L   NL                     V+     R     P +       +  + + 
Sbjct: 4   TLDLTGKNLHPDV---------TGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLS 54

Query: 338 SNQISD-TIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSIQILFLNENFLRGTIPS- 395
           ++ I   T+  +++    L  L +E  +L+  I   + +  ++  L L+           
Sbjct: 55  NSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQ 114

Query: 396 -------SLGNLTLLTQLILEVNNLQGKIPPSNGNCQNLILLTTRKNKLSGIVPRQLLRI 448
                   L  L L         ++Q  +   +     L L   RKN     +   + R 
Sbjct: 115 TLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRC 174

Query: 449 ITLSVLLDLSDNLLSGHFPTKVGNLKNLVSLDISS-NMFSGEIPTTLGGCTSLEYLGMQD 507
             L  L      +L      +   L  L  L +S       E    LG   +L+ L +  
Sbjct: 175 PNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFG 234

Query: 508 NSFTISIPSTLSSLKSITELDLSRNNLSGHIPQYLEN 544
                ++     +L     L ++ ++ +      + N
Sbjct: 235 IVPDGTLQLLKEALPH---LQINCSHFTTIARPTIGN 268

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.5 bits (93), Expect = 4e-04
 Identities = 32/231 (13%), Positives = 75/231 (32%), Gaps = 12/231 (5%)

Query: 302 NCTKLEVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQISDTIPDVIANLVNLNALGVE 361
           +  +++ +DL ++         + +  + +  +++   ++SD I + +A   NL  L + 
Sbjct: 44  SPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLS 103

Query: 362 SNQLAGTIPLAIGELKSIQILFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQG------ 415
                    L        ++  LN ++        +          +   NL G      
Sbjct: 104 GCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQ 163

Query: 416 --KIPPSNGNCQNLILLTTRKNKLSGIVPRQLLRIITLSVLLDLSD-NLLSGHFPTKVGN 472
              +      C NL+ L    + +      Q    +     L LS    +      ++G 
Sbjct: 164 KSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGE 223

Query: 473 LKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTISIPSTLSSLKS 523
           +  L +L +   +  G +         L+      + FT     T+ + K+
Sbjct: 224 IPTLKTLQVFGIVPDGTLQLLKEALPHLQINC---SHFTTIARPTIGNKKN 271

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 49.1 bits (115), Expect = 7e-07
 Identities = 21/92 (22%), Positives = 33/92 (35%), Gaps = 9/92 (9%)

Query: 457 LSDNLLSGHFPTKVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTISIPS 516
              N  S    +      +L  L++S+N    E+P        LE L    N     +P 
Sbjct: 267 YYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPP---RLERLIASFNHLA-EVPE 321

Query: 517 TLSSLKSITELDLSRNNLSGHIPQYLENLSFL 548
              +LK   +L +  N L    P   E++  L
Sbjct: 322 LPQNLK---QLHVEYNPLRE-FPDIPESVEDL 349

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 41.0 bits (94), Expect = 3e-04
 Identities = 24/92 (26%), Positives = 37/92 (40%), Gaps = 9/92 (9%)

Query: 89  LTNNYFLGKILTDLSHCSNLMKFEASNNKLEGEIPVKISNLLMLQILNIAENHLKGQLPA 148
              N    +I +      +L +   SNNKL  E+P     L   + L  + NHL  ++P 
Sbjct: 267 YYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPRL---ERLIASFNHLA-EVPE 321

Query: 149 SIGNLSALQEIDVRGNRLGGRIPSTISHVRNL 180
              NL   +++ V  N L    P     V +L
Sbjct: 322 LPQNL---KQLHVEYNPLRE-FPDIPESVEDL 349

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 40.2 bits (92), Expect = 5e-04
 Identities = 20/99 (20%), Positives = 34/99 (34%), Gaps = 16/99 (16%)

Query: 258 NRNLFSGKVSINFSRLQNLSRLNLGENNLGTGTTNDLDFITLLTNCTKLEVLDLHSNRFG 317
             N  S ++        +L  LN+  N L          I L     +LE L    N   
Sbjct: 268 YLNASSNEIRSLCDLPPSLEELNVSNNKL----------IELPALPPRLERLIASFNHLA 317

Query: 318 GVLPFSLANLSTTMTEIAIGSNQISDTIPDVIANLVNLN 356
             +P    NL     ++ +  N +    PD+  ++ +L 
Sbjct: 318 E-VPELPQNL----KQLHVEYNPLR-EFPDIPESVEDLR 350

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 38.7 bits (88), Expect = 0.001
 Identities = 23/101 (22%), Positives = 34/101 (33%), Gaps = 8/101 (7%)

Query: 104 HCSNLMKFEASNNKLEGEIPVKISNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRG 163
             S L       N    EI         L+ LN++ N L  +LPA       L+ +    
Sbjct: 258 GLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPR---LERLIASF 313

Query: 164 NRLGGRIPSTISHVRNLISFNVAYNQFSGMIPPIYNISSLQ 204
           N L   +P       NL   +V YN          ++  L+
Sbjct: 314 NHL-AEVPELPQ---NLKQLHVEYNPLREFPDIPESVEDLR 350

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.2 bits (115), Expect = 9e-07
 Identities = 17/94 (18%), Positives = 29/94 (30%), Gaps = 10/94 (10%)

Query: 475 NLVSLDISSNMFSGE-IPTTLGGCTSLEYLGMQDNSFT----ISIPSTLSSLKSITELDL 529
           ++ SLDI     S       L      + + + D   T      I S L    ++ EL+L
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 530 SRNNLSGHIPQYL-----ENLSFLLFLNMSYNHF 558
             N L       +          +  L++     
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCL 96

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.4 bits (105), Expect = 1e-05
 Identities = 16/92 (17%), Positives = 30/92 (32%), Gaps = 6/92 (6%)

Query: 269 NFSRLQNLSRLNLGENNLGTGTTNDLDFITLLTNCTKLEVLDLHSNRFGG----VLPFSL 324
                  L  L L + ++   + + L     L     L  LDL +N  G      L  S+
Sbjct: 364 LGQPGSVLRVLWLADCDVSDSSCSSL--AATLLANHSLRELDLSNNCLGDAGILQLVESV 421

Query: 325 ANLSTTMTEIAIGSNQISDTIPDVIANLVNLN 356
                 + ++ +     S+ + D +  L    
Sbjct: 422 RQPGCLLEQLVLYDIYWSEEMEDRLQALEKDK 453

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.0 bits (104), Expect = 2e-05
 Identities = 17/78 (21%), Positives = 27/78 (34%), Gaps = 3/78 (3%)

Query: 251 NLQGLEINRNLFSGK-VSINFSRLQNLSRLNLGENNLGTGTTNDLDFITLLTNCTKLEVL 309
           ++Q L+I     S    +     LQ    + L +  L      D+   + L     L  L
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDI--SSALRVNPALAEL 60

Query: 310 DLHSNRFGGVLPFSLANL 327
           +L SN  G V    +   
Sbjct: 61  NLRSNELGDVGVHCVLQG 78

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.2 bits (102), Expect = 3e-05
 Identities = 17/77 (22%), Positives = 30/77 (38%), Gaps = 9/77 (11%)

Query: 496 GCTSLEYLGMQDNSFT----ISIPSTLSSLKSITELDLSRNNLSGHIPQYL-----ENLS 546
             + L  L + D   +     S+ +TL +  S+ ELDLS N L       L     +   
Sbjct: 367 PGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGC 426

Query: 547 FLLFLNMSYNHFEGKVP 563
            L  L +   ++  ++ 
Sbjct: 427 LLEQLVLYDIYWSEEME 443

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.8 bits (101), Expect = 4e-05
 Identities = 11/92 (11%), Positives = 26/92 (28%), Gaps = 5/92 (5%)

Query: 455 LDLSDNLLS-GHFPTKVGNLKNLVSLDISSNMFSGE----IPTTLGGCTSLEYLGMQDNS 509
           LD+    LS   +   +  L+    + +     +      I + L    +L  L ++ N 
Sbjct: 7   LDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNE 66

Query: 510 FTISIPSTLSSLKSITELDLSRNNLSGHIPQY 541
                   +          + + +L       
Sbjct: 67  LGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTG 98

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.0 bits (99), Expect = 7e-05
 Identities = 15/83 (18%), Positives = 25/83 (30%), Gaps = 9/83 (10%)

Query: 472 NLKNLVSLDISSNMFSGE----IPTTLGGCTSLEYLGMQDNSFTISIPSTLSS-----LK 522
               L  L ++    S      +  TL    SL  L + +N    +    L         
Sbjct: 367 PGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGC 426

Query: 523 SITELDLSRNNLSGHIPQYLENL 545
            + +L L     S  +   L+ L
Sbjct: 427 LLEQLVLYDIYWSEEMEDRLQAL 449

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.7 bits (98), Expect = 9e-05
 Identities = 12/96 (12%), Positives = 34/96 (35%), Gaps = 8/96 (8%)

Query: 275 NLSRLNLGENNLGTGTTNDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANL---STTM 331
           ++  L++    L      D  +  LL    + +V+ L            +++    +  +
Sbjct: 3   DIQSLDIQCEELS-----DARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPAL 57

Query: 332 TEIAIGSNQISDTIPDVIANLVNLNALGVESNQLAG 367
            E+ + SN++ D     +   +   +  ++   L  
Sbjct: 58  AELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQN 93

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.9 bits (96), Expect = 2e-04
 Identities = 12/68 (17%), Positives = 20/68 (29%), Gaps = 5/68 (7%)

Query: 499 SLEYLGMQDNSFT-ISIPSTLSSLKSITELDLSRNNLSG----HIPQYLENLSFLLFLNM 553
            ++ L +Q    +       L  L+    + L    L+      I   L     L  LN+
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 554 SYNHFEGK 561
             N     
Sbjct: 63  RSNELGDV 70

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.3 bits (92), Expect = 5e-04
 Identities = 21/163 (12%), Positives = 43/163 (26%), Gaps = 21/163 (12%)

Query: 176 HVRNLISFNVAYNQFSGMIPPIYNISSLQYIFIHTNRFHGSVPLDNGVNLPNLRYFSISG 235
                 +     +  S +    + +          +     +    G     LR   ++ 
Sbjct: 319 VKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLAD 378

Query: 236 NNLTGSLQDSLSNATNLQGLEINRNLFSGKVSINFSRLQNLSRLNLGENNLGTGTTNDLD 295
            +++ S   SL+                           +L  L+L  N LG      L 
Sbjct: 379 CDVSDSSCSSLAAT--------------------LLANHSLRELDLSNNCLGDAGILQL- 417

Query: 296 FITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSTTMTEIAIGS 338
             ++      LE L L+   +   +   L  L      + + S
Sbjct: 418 VESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVIS 460

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.0 bits (91), Expect = 6e-04
 Identities = 16/77 (20%), Positives = 28/77 (36%), Gaps = 9/77 (11%)

Query: 455 LDLSDNLLSG----HFPTKVGNLKNLVSLDISSNMFSGEIPTTLGG-----CTSLEYLGM 505
           L L+D  +S          +    +L  LD+S+N         L          LE L +
Sbjct: 374 LWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVL 433

Query: 506 QDNSFTISIPSTLSSLK 522
            D  ++  +   L +L+
Sbjct: 434 YDIYWSEEMEDRLQALE 450

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.3 bits (84), Expect = 0.004
 Identities = 14/113 (12%), Positives = 33/113 (29%), Gaps = 5/113 (4%)

Query: 107 NLMKFEASNNKLEGEIPVKISNLLM-LQILNIAENHLKGQ----LPASIGNLSALQEIDV 161
           ++   +    +L      ++  LL   Q++ + +  L       + +++    AL E+++
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 162 RGNRLGGRIPSTISHVRNLISFNVAYNQFSGMIPPIYNISSLQYIFIHTNRFH 214
           R N LG      +       S  +                 L           
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQ 115

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 44.7 bits (105), Expect = 2e-06
 Identities = 23/108 (21%), Positives = 46/108 (42%), Gaps = 4/108 (3%)

Query: 133 QILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVAYNQFSG 192
           ++L++A   L       +  L  +  +D+  NRL    P+ ++ +R L       +    
Sbjct: 1   RVLHLAHKDLTV--LCHLEQLLLVTHLDLSHNRLRALPPA-LAALRCLEVLQA-SDNALE 56

Query: 193 MIPPIYNISSLQYIFIHTNRFHGSVPLDNGVNLPNLRYFSISGNNLTG 240
            +  + N+  LQ + +  NR   S  +   V+ P L   ++ GN+L  
Sbjct: 57  NVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 104

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.2 bits (88), Expect = 5e-04
 Identities = 28/111 (25%), Positives = 44/111 (39%), Gaps = 7/111 (6%)

Query: 380 QILFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSNGNCQNLILLTTRKNKLSG 439
           ++L L    L  T+   L  L L+T L L  N L+  +PP+    + L +L    N L  
Sbjct: 1   RVLHLAHKDL--TVLCHLEQLLLVTHLDLSHNRLRA-LPPALAALRCLEVLQASDNALEN 57

Query: 440 IVPRQLLRIITLSVLLDLSDNLL-SGHFPTKVGNLKNLVSLDISSNMFSGE 489
           +     L  +     L L +N L        + +   LV L++  N    E
Sbjct: 58  VDGVANLPRLQ---ELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE 105

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 37.0 bits (85), Expect = 0.001
 Identities = 21/117 (17%), Positives = 36/117 (30%), Gaps = 25/117 (21%)

Query: 455 LDLSDNLLSGHFPTKVGNLKNLVSLDISSNMFSGEIPT---------------------T 493
           L L+   L+      +  L  +  LD+S N      P                       
Sbjct: 3   LHLAHKDLTV--LCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDG 60

Query: 494 LGGCTSLEYLGMQDNSFT-ISIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLL 549
           +     L+ L + +N     +    L S   +  L+L  N+L        E L+ +L
Sbjct: 61  VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ-EEGIQERLAEML 116

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 45.4 bits (106), Expect = 5e-06
 Identities = 41/227 (18%), Positives = 68/227 (29%), Gaps = 23/227 (10%)

Query: 341 ISDTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSIQILFLNENFLRGTIPSSLGNL 400
           I+   PD    L N   +    + +  T+  A  +L  I  L      +       +  L
Sbjct: 9   INVIFPD--PALANAIKIAAGKSNVTDTVTQA--DLDGITTLSAFGTGVTTI--EGVQYL 62

Query: 401 TLLTQLILEVNNLQGKIPPSNGNCQNLILLTTRKNKLSGIVPRQLLRIITLSVLLDLSDN 460
             L  L L+ N +    P  N      + L+    K    +               ++D 
Sbjct: 63  NNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDV 122

Query: 461 LLSGHFPTKVGNLKNLVSLDI-------------SSNMFSGEIPTTLGGCTSLEYLGMQD 507
                         +L  +               S         T L   + L  L   D
Sbjct: 123 TPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADD 182

Query: 508 NSFTISIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLLFLNMS 554
           N  +   P  L+SL ++ E+ L  N +S   P  L N S L  + ++
Sbjct: 183 NKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLT 225

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 42.3 bits (98), Expect = 5e-05
 Identities = 32/226 (14%), Positives = 66/226 (29%), Gaps = 18/226 (7%)

Query: 56  NLNFLRSINLPNNSFRGKIPHEVGNLFRLQNLTLTNNYFLGKILTDLSHCSNLMKFEASN 115
            L     I    ++    +     +L  +  L+          +  + + +NL+  E  +
Sbjct: 17  ALANAIKIAAGKSNVTDTVTQA--DLDGITTLSAFGTGV--TTIEGVQYLNNLIGLELKD 72

Query: 116 NKLEGEIPVKISNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTIS 175
           N++    P+K          N+ +          + N+SA+  +             T  
Sbjct: 73  NQITDLAPLK----------NLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDV 122

Query: 176 HVRNLISFNVAYNQFSGMIPPIYNISSLQYIFIHTNRFHGSVPLDNGVNLPNLRYFSISG 235
                +S           I  I  ++ L  +   +        L    NL  L       
Sbjct: 123 TPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADD 182

Query: 236 NNLTGSLQDSLSNATNLQGLEINRNLFSGKVSINFSRLQNLSRLNL 281
           N ++      L++  NL  + +  N  S       +   NL  + L
Sbjct: 183 NKISDI--SPLASLPNLIEVHLKNNQISD--VSPLANTSNLFIVTL 224

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 39.2 bits (90), Expect = 6e-04
 Identities = 33/220 (15%), Positives = 71/220 (32%), Gaps = 28/220 (12%)

Query: 106 SNLMKFEASNNKLEGEIPVKISNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNR 165
           +N +K  A  + +   +    ++L  +  L+     +       +  L+ L  ++++ N+
Sbjct: 19  ANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKDNQ 74

Query: 166 LGGRIPSTISHVRNLISFNVAYNQFSGMIPPIYNISSLQYIFIHTNRFHGSVPLDNGVNL 225
           +    P         +  +    +    I  + +I +L               L N   L
Sbjct: 75  ITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVL 134

Query: 226 --------------PNLRYFSISGNNLTGSLQDSLSNATNLQGLEINRNLFSGKVSINFS 271
                                +S  N   S    L+N + L  L+ + N  S       +
Sbjct: 135 YLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISD--ISPLA 192

Query: 272 RLQNLSRLNLGENNLGTGTTNDLDFITLLTNCTKLEVLDL 311
            L NL  ++L  N +          ++ L N + L ++ L
Sbjct: 193 SLPNLIEVHLKNNQISD--------VSPLANTSNLFIVTL 224

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.7 bits (96), Expect = 4e-05
 Identities = 23/151 (15%), Positives = 42/151 (27%), Gaps = 2/151 (1%)

Query: 104 HCSNLMKFEASNNKLEGEIPVKISNLLMLQILNIAEN-HLKGQLPASIGNLSALQEIDVR 162
                     + +    +    +     L  L I    HL+      +  L  L+ + + 
Sbjct: 6   CPHGSSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIV 64

Query: 163 GNRLGGRIPSTISHVRNLISFNVAYNQFSGMIPPIYNISSLQYIFIHTNRFHGSVPLDNG 222
            + L    P        L   N+++N    +        SLQ + +  N  H S  L   
Sbjct: 65  KSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLHCSCALRWL 124

Query: 223 VNLPNLRYFSISGNNLTGSLQDSLSNATNLQ 253
                     +    L    Q  L++  N  
Sbjct: 125 QRWEEEGLGGVPEQKLQCHGQGPLAHMPNAS 155

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.4 bits (93), Expect = 2e-04
 Identities = 40/214 (18%), Positives = 68/214 (31%), Gaps = 19/214 (8%)

Query: 341 ISDTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSIQILFLNENFLRGTIPSSLGNL 400
           I     D            ++   +   +     EL SI  +  N + ++      +  L
Sbjct: 14  IKQIFSD--DAFAETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDIKSVQG--IQYL 67

Query: 401 TLLTQLILEVNNLQGKIPPSNGNCQNLILLTTRKNKLSGIVPRQLLRIITLSVLLDLSDN 460
             +T+L L  N L    P +N       L       L     + L  +  L  L  LS  
Sbjct: 68  PNVTKLFLNGNKLTDIKPLAN-------LKNLGWLFLDENKVKDLSSLKDLKKLKSLSLE 120

Query: 461 LLSGHFPTKVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTISIPSTLSS 520
                    + +L  L SL + +N  +     +           +      IS    L+ 
Sbjct: 121 HNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDT----LSLEDNQISDIVPLAG 176

Query: 521 LKSITELDLSRNNLSGHIPQYLENLSFLLFLNMS 554
           L  +  L LS+N++S    + L  L  L  L + 
Sbjct: 177 LTKLQNLYLSKNHISD--LRALAGLKNLDVLELF 208

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.5 bits (88), Expect = 0.001
 Identities = 29/208 (13%), Positives = 65/208 (31%), Gaps = 22/208 (10%)

Query: 106 SNLMKFEASNNKLEGEIPVKISNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNR 165
           +  +K       +   +    + L  +  +    + +K      I  L  + ++ + GN+
Sbjct: 24  AETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGNK 79

Query: 166 LGGRIPSTISHVRNLISFNVAYNQFSGMIPPIYNISSLQYIFIHTNRFHGSVPLDNGVNL 225
           L    P         +  +    +    +  +  + SL       +  +G V L    +L
Sbjct: 80  LTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESL 139

Query: 226 PNLRYFSISGNNLTGSLQDSLSNATNLQGLEINRNLFSGKVSINFSRLQNLSRLNLGENN 285
                       L+   +    +  + Q  +I          +  + L  L  L L +N+
Sbjct: 140 YLGNNKITDITVLSRLTKLDTLSLEDNQISDI----------VPLAGLTKLQNLYLSKNH 189

Query: 286 LGTGTTNDLDFITLLTNCTKLEVLDLHS 313
           +          +  L     L+VL+L S
Sbjct: 190 ISD--------LRALAGLKNLDVLELFS 209

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.0 bits (86), Expect = 0.002
 Identities = 27/241 (11%), Positives = 53/241 (21%), Gaps = 19/241 (7%)

Query: 22  CQWTGVTCGHRRQRVTGLDLRHQSVGGVLSPFVGNLNFLRSINLPNNSFRGKIPHEVGNL 81
           C      C   +      DL                     +       R          
Sbjct: 8   CSNRVFLCQESKVTEIPSDL---------------PRNAIELRFVLTKLRVIQKGAFSGF 52

Query: 82  FRLQNLTLTNNYFLGKILTDLSHCSNLMKFEA----SNNKLEGEIPVKISNLLMLQILNI 137
             L+ + ++ N  L  I  D+      +        +N         +    L   +++ 
Sbjct: 53  GDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISN 112

Query: 138 AENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVAYNQFSGMIPPI 197
                   +         L +I    N       S +      +   +  N    +    
Sbjct: 113 TGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCA 172

Query: 198 YNISSLQYIFIHTNRFHGSVPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEI 257
           +N + L  + +  N     +P D            IS   +       L N   L+    
Sbjct: 173 FNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARST 232

Query: 258 N 258
            
Sbjct: 233 Y 233

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 37.7 bits (86), Expect = 0.002
 Identities = 35/211 (16%), Positives = 62/211 (29%), Gaps = 18/211 (8%)

Query: 339 NQISDTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSIQILFLNENFLRGTIPSSLG 398
             I+    D    L       +    +  T+     +L  +  L  +   +       + 
Sbjct: 6   TPINQIFTD--TALAEKMKTVLGKTNVTDTVSQT--DLDQVTTLQADRLGI--KSIDGVE 59

Query: 399 NLTLLTQLILEVNNLQGKIPPSNGNCQNLILLTTRKNKLSGIVPRQLLRIITLSVLLDLS 458
            L  LTQ+    N L    P  N      IL+   +      +                +
Sbjct: 60  YLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGL-------T 112

Query: 459 DNLLSGHFPTKVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTISIPSTL 518
                      + NL NL  L     + S  I              +  +S  ++    L
Sbjct: 113 LFNNQITDIDPLKNLTNLNRL----ELSSNTISDISALSGLTSLQQLNFSSNQVTDLKPL 168

Query: 519 SSLKSITELDLSRNNLSG-HIPQYLENLSFL 548
           ++L ++  LD+S N +S   +   L NL  L
Sbjct: 169 ANLTTLERLDISSNKVSDISVLAKLTNLESL 199

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 37.1 bits (84), Expect = 0.002
 Identities = 36/221 (16%), Positives = 70/221 (31%), Gaps = 48/221 (21%)

Query: 22  CQWTGVTCGHRRQRVTGLDLRHQSVGGVLSPFVGNLNFLRSI--NLPNNSFRGKIPHEVG 79
           C+ T V C  R                           L+ I  ++P +           
Sbjct: 8   CEGTTVDCTGRG--------------------------LKEIPRDIPLH----------- 30

Query: 80  NLFRLQNLTLTNNYFLGKI-LTDLSHCSNLMKFEASNNKLEGEIPVKISNLLMLQILNIA 138
                  L L +N               +L+K E   N+L G  P        +Q L + 
Sbjct: 31  ----TTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG 86

Query: 139 ENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVAYNQFSGMIPPIY 198
           EN +K         L  L+ +++  N++   +P +  H+ +L S N+A N F+      +
Sbjct: 87  ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAW 146

Query: 199 NISSLQYIFIHTNRFHGSVPLDNGVNLPNLRYFSISGNNLT 239
               L+   ++        P      + +++   +  +   
Sbjct: 147 FAEWLRKKSLNGGAARCGAP----SKVRDVQIKDLPHSEFK 183

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	566
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	100.0
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.95
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.94
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.94
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.92
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.9
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.89
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.87
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.86
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.85
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.78
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.78
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.77
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.76
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.74
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.74
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.7
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.69
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.67
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.66
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.65
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.65
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.64
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.64
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.62
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.61
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.53
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.51
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.5
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.48
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.48
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.47
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.23
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.22
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.2
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.19
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.25
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.09
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.91
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.87
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.4
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.13

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=100.00  E-value=1.2e-32  Score=262.22  Aligned_cols=281  Identities=26%  Similarity=0.397  Sum_probs=236.3

Q ss_pred             CcccCCCCCCCCCCCcCCCCCC--cccccccCCCC--CcEEEEEcCCCcccc--ccCccCcCCCCCCEEecCC-Cccccc
Q 046712            1 MKSQLQDPLGVTSSWNNSINLC--QWTGVTCGHRR--QRVTGLDLRHQSVGG--VLSPFVGNLNFLRSINLPN-NSFRGK   73 (566)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~--~~~~~l~l~~~~i~~--~~~~~~~~l~~L~~L~ls~-~~l~~~   73 (566)
                      ||+++.||. ++++|..+++||  .|.||.|....  .+|+.|+|+++.+.+  .+|..++++++|++|++++ |.+.+.
T Consensus        14 ~k~~~~~~~-~l~sW~~~~d~C~~~w~gv~C~~~~~~~~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~   92 (313)
T d1ogqa_          14 IKKDLGNPT-TLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGP   92 (313)
T ss_dssp             HHHHTTCCG-GGTTCCTTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESC
T ss_pred             HHHHCCCCC-cCCCCCCCCCCCCCcCCCeEEeCCCCcEEEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccc
Confidence            688888885 689999999999  49999998654  389999999999987  4788999999999999997 788888


Q ss_pred             CCcccCCCCCCCEEeCCCCcCCCcCccccccCCCCcEEEcCCCcCCCCcchhccCCCCCCEEecccccCCCCCCccccCC
Q 046712           74 IPHEVGNLFRLQNLTLTNNYFLGKILTDLSHCSNLMKFEASNNKLEGEIPVKISNLLMLQILNIAENHLKGQLPASIGNL  153 (566)
Q Consensus        74 ~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l  153 (566)
                      +|.+|.++++|++|++++|++.+..+..+..+++|+++++++|.+...+|..+.+++.|+++++++|.+.+.+|..+..+
T Consensus        93 iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l  172 (313)
T d1ogqa_          93 IPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSF  172 (313)
T ss_dssp             CCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCC
T ss_pred             cccccccccccchhhhccccccccccccccchhhhcccccccccccccCchhhccCcccceeeccccccccccccccccc
Confidence            99999999999999999999998888889999999999999999888889999999999999999999988899999888


Q ss_pred             CCC-CEEEccCCcCcccCCcccccCCcccEeecccccceecCC-cccCcccCceEecccccccccCCCCCCCCCCCCcEE
Q 046712          154 SAL-QEIDVRGNRLGGRIPSTISHVRNLISFNVAYNQFSGMIP-PIYNISSLQYIFIHTNRFHGSVPLDNGVNLPNLRYF  231 (566)
Q Consensus       154 ~~L-~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L  231 (566)
                      ..+ +.+++++|.+++..|..+..+..+ .+++.++...+..+ ....++.++.+++.++.+.+.++. . ..+++|+.|
T Consensus       173 ~~l~~~l~~~~n~l~~~~~~~~~~l~~~-~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~-~-~~~~~L~~L  249 (313)
T d1ogqa_         173 SKLFTSMTISRNRLTGKIPPTFANLNLA-FVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-V-GLSKNLNGL  249 (313)
T ss_dssp             CTTCCEEECCSSEEEEECCGGGGGCCCS-EEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-C-CCCTTCCEE
T ss_pred             cccccccccccccccccccccccccccc-ccccccccccccccccccccccccccccccccccccccc-c-ccccccccc
Confidence            876 889999999988888888777655 68888887777666 556778888888888887765543 2 257788888


Q ss_pred             EcccccccccCcccccccCCCCeeecccccccccccccccCCCCCcEEECCCCcc
Q 046712          232 SISGNNLTGSLQDSLSNATNLQGLEINRNLFSGKVSINFSRLQNLSRLNLGENNL  286 (566)
Q Consensus       232 ~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  286 (566)
                      ++++|++++..+..++++++|++|++++|.+++.+|. +..+++|+.+++.+|+.
T Consensus       250 ~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~-~~~L~~L~~l~l~~N~~  303 (313)
T d1ogqa_         250 DLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANNKC  303 (313)
T ss_dssp             ECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC-STTGGGSCGGGTCSSSE
T ss_pred             cCccCeecccCChHHhCCCCCCEEECcCCcccccCCC-cccCCCCCHHHhCCCcc
Confidence            8888888877777788888888888888888755553 45666777777777753

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.95  E-value=2.6e-27  Score=225.01  Aligned_cols=256  Identities=30%  Similarity=0.473  Sum_probs=216.8

Q ss_pred             CCCEEEccCCeeee--ecchhHhhhccCCcEEEccC-CCCCCCcchhhhccCCCCeecccCCcccccccccccCCCCCCE
Q 046712          305 KLEVLDLHSNRFGG--VLPFSLANLSTTMTEIAIGS-NQISDTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSIQI  381 (566)
Q Consensus       305 ~L~~L~l~~~~~~~--~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~  381 (566)
                      +++.|+++++.+.+  .+|..+... +.|++|++++ |.+++.+|..+.++++|++|++++|++.+..+..+..+..|+.
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~l~~L-~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~  129 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSSLANL-PYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT  129 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGC-TTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred             EEEEEECCCCCCCCCCCCChHHhcC-ccccccccccccccccccccccccccccchhhhccccccccccccccchhhhcc
Confidence            56677777776654  345555554 7778888875 5677778888999999999999999998888888888999999


Q ss_pred             EEccCCcccccCCccccCCCCCCeEeccCccccccCCCCCcCCCCC-cEEEccCCcceeccchhhhhhcccceEEEccCC
Q 046712          382 LFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSNGNCQNL-ILLTTRKNKLSGIVPRQLLRIITLSVLLDLSDN  460 (566)
Q Consensus       382 L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L-~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~  460 (566)
                      +++++|.+...+|..+..++.++.+++++|.+.+.+|..+..+..+ +.+++++|++.+..+..+.....  ..+++.++
T Consensus       130 l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~--~~l~l~~~  207 (313)
T d1ogqa_         130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNL--AFVDLSRN  207 (313)
T ss_dssp             EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCC--SEEECCSS
T ss_pred             cccccccccccCchhhccCcccceeecccccccccccccccccccccccccccccccccccccccccccc--cccccccc
Confidence            9999999888888899999999999999999988888888887776 88999999999888877665533  46899999


Q ss_pred             cccccCCcCccCCCCCCEEeCccccccccCCccccCCCCCcEEeCCCCcccccCCcCCcCCCCCCEEeCCCCccccccCc
Q 046712          461 LLSGHFPTKVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTISIPSTLSSLKSITELDLSRNNLSGHIPQ  540 (566)
Q Consensus       461 ~~~~~~~~~~~~~~~L~~L~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~  540 (566)
                      ...+..+..+..+++++.+++++|.+.+. +..+..+++|++|++++|++++.+|+++.++++|++|+|++|++++.+|+
T Consensus       208 ~~~~~~~~~~~~~~~l~~l~~~~~~l~~~-~~~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~  286 (313)
T d1ogqa_         208 MLEGDASVLFGSDKNTQKIHLAKNSLAFD-LGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ  286 (313)
T ss_dssp             EEEECCGGGCCTTSCCSEEECCSSEECCB-GGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC
T ss_pred             ccccccccccccccccccccccccccccc-ccccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCC
Confidence            99888888889999999999999999854 44688899999999999999999999999999999999999999988886


Q ss_pred             cccccccCceeecccCc-Cccc-CCCCC
Q 046712          541 YLENLSFLLFLNMSYNH-FEGK-VPIEC  566 (566)
Q Consensus       541 ~l~~l~~L~~L~l~~n~-~~~~-~p~~~  566 (566)
                       +.++++|+.+++++|+ +.|. +| .|
T Consensus       287 -~~~L~~L~~l~l~~N~~l~g~plp-~c  312 (313)
T d1ogqa_         287 -GGNLQRFDVSAYANNKCLCGSPLP-AC  312 (313)
T ss_dssp             -STTGGGSCGGGTCSSSEEESTTSS-CC
T ss_pred             -cccCCCCCHHHhCCCccccCCCCC-CC
Confidence             4789999999999998 5664 55 44

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.94  E-value=7.7e-25  Score=214.71  Aligned_cols=343  Identities=24%  Similarity=0.329  Sum_probs=179.5

Q ss_pred             cCCCCCCEEecCCCcccccCCcccCCCCCCCEEeCCCCcCCCcCccccccCCCCcEEEcCCCcCCCCcchhccCCCCCCE
Q 046712           55 GNLNFLRSINLPNNSFRGKIPHEVGNLFRLQNLTLTNNYFLGKILTDLSHCSNLMKFEASNNKLEGEIPVKISNLLMLQI  134 (566)
Q Consensus        55 ~~l~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~  134 (566)
                      ..+.+|++|+++++++++ + +.+..+++|++|++++|++++..  .++++++|++|++++|++.+..  .++++++|+.
T Consensus        41 ~~l~~l~~L~l~~~~I~~-l-~gl~~L~nL~~L~Ls~N~l~~l~--~l~~L~~L~~L~L~~n~i~~i~--~l~~l~~L~~  114 (384)
T d2omza2          41 TDLDQVTTLQADRLGIKS-I-DGVEYLNNLTQINFSNNQLTDIT--PLKNLTKLVDILMNNNQIADIT--PLANLTNLTG  114 (384)
T ss_dssp             HHHTTCCEEECCSSCCCC-C-TTGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCCCG--GGTTCTTCCE
T ss_pred             HHhCCCCEEECCCCCCCC-c-cccccCCCCCEEeCcCCcCCCCc--cccCCccccccccccccccccc--cccccccccc
Confidence            345566666666666652 2 24556666666666666665432  2666666666666666665332  2566666666


Q ss_pred             EecccccCCCCCCccccCCCCCCEEEccCCcCcccCCcccccCCcccEeecccccceecCCcccCcccCceEeccccccc
Q 046712          135 LNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVAYNQFSGMIPPIYNISSLQYIFIHTNRFH  214 (566)
Q Consensus       135 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~  214 (566)
                      |+++++.+.+.  ........+.......+.+....+.................    ....+.............+...
T Consensus       115 L~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~  188 (384)
T d2omza2         115 LTLFNNQITDI--DPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVT----DLKPLANLTTLERLDISSNKVS  188 (384)
T ss_dssp             EECCSSCCCCC--GGGTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCC----CCGGGTTCTTCCEEECCSSCCC
T ss_pred             ccccccccccc--ccccccccccccccccccccccccccccccccccccccccc----hhhhhccccccccccccccccc
Confidence            66666665522  12334445555555554443211111111111111110000    0011122222222222222221


Q ss_pred             ccCCCCCCCCCCCCcEEEcccccccccCcccccccCCCCeeecccccccccccccccCCCCCcEEECCCCccCCcCCCCh
Q 046712          215 GSVPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINRNLFSGKVSINFSRLQNLSRLNLGENNLGTGTTNDL  294 (566)
Q Consensus       215 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~  294 (566)
                      .   ......+++++.+.++++.+++..+  ...+++|+.+++++|.+...  ..+..+++|+.+++.+|.+....+   
T Consensus       189 ~---~~~~~~l~~~~~l~l~~n~i~~~~~--~~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~---  258 (384)
T d2omza2         189 D---ISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP---  258 (384)
T ss_dssp             C---CGGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG---
T ss_pred             c---ccccccccccceeeccCCccCCCCc--ccccCCCCEEECCCCCCCCc--chhhcccccchhccccCccCCCCc---
Confidence            1   1111245666666666666554322  34556667777766666542  235566667777776666554322   


Q ss_pred             hhhhhccCCCCCCEEEccCCeeeeecchhHhhhccCCcEEEccCCCCCCCcchhhhccCCCCeecccCCccccccccccc
Q 046712          295 DFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQISDTIPDVIANLVNLNALGVESNQLAGTIPLAIG  374 (566)
Q Consensus       295 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~  374 (566)
                           +..+++|+.|+++++++.+..+  +. ..+.++.+.+..|.+.+.  ..+..++++++|++++|++++..  .+.
T Consensus       259 -----~~~~~~L~~L~l~~~~l~~~~~--~~-~~~~l~~l~~~~n~l~~~--~~~~~~~~l~~L~ls~n~l~~l~--~l~  326 (384)
T d2omza2         259 -----LSGLTKLTELKLGANQISNISP--LA-GLTALTNLELNENQLEDI--SPISNLKNLTYLTLYFNNISDIS--PVS  326 (384)
T ss_dssp             -----GTTCTTCSEEECCSSCCCCCGG--GT-TCTTCSEEECCSSCCSCC--GGGGGCTTCSEEECCSSCCSCCG--GGG
T ss_pred             -----ccccccCCEeeccCcccCCCCc--cc-cccccccccccccccccc--cccchhcccCeEECCCCCCCCCc--ccc
Confidence                 4556667777776666654322  11 125566666666666532  23556666777777777666432  256


Q ss_pred             CCCCCCEEEccCCcccccCCccccCCCCCCeEeccCccccccCCCCCcCCCCCcEEEccCC
Q 046712          375 ELKSIQILFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSNGNCQNLILLTTRKN  435 (566)
Q Consensus       375 ~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~  435 (566)
                      .+++|++|++++|.+++ ++ .+.++++|++|++++|++++..|  +.++++|++|++++|
T Consensus       327 ~l~~L~~L~L~~n~l~~-l~-~l~~l~~L~~L~l~~N~l~~l~~--l~~l~~L~~L~L~~N  383 (384)
T d2omza2         327 SLTKLQRLFFANNKVSD-VS-SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ  383 (384)
T ss_dssp             GCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECCSSCCCBCGG--GTTCTTCSEEECCCE
T ss_pred             cCCCCCEEECCCCCCCC-Ch-hHcCCCCCCEEECCCCcCCCChh--hccCCCCCEeeCCCC
Confidence            66677777777776652 22 46666777777777776664332  566666777666655

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.94  E-value=1.9e-24  Score=211.88  Aligned_cols=340  Identities=26%  Similarity=0.361  Sum_probs=248.6

Q ss_pred             CcEEEEEcCCCccccccCccCcCCCCCCEEecCCCcccccCCcccCCCCCCCEEeCCCCcCCCcCccccccCCCCcEEEc
Q 046712           34 QRVTGLDLRHQSVGGVLSPFVGNLNFLRSINLPNNSFRGKIPHEVGNLFRLQNLTLTNNYFLGKILTDLSHCSNLMKFEA  113 (566)
Q Consensus        34 ~~~~~l~l~~~~i~~~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l  113 (566)
                      ..+++|++++++|+..  +.+..+++|++|++++|.+++ ++ .+.++++|++|++++|.+.+..  .++.+++|+.+++
T Consensus        44 ~~l~~L~l~~~~I~~l--~gl~~L~nL~~L~Ls~N~l~~-l~-~l~~L~~L~~L~L~~n~i~~i~--~l~~l~~L~~L~~  117 (384)
T d2omza2          44 DQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTD-IT-PLKNLTKLVDILMNNNQIADIT--PLANLTNLTGLTL  117 (384)
T ss_dssp             TTCCEEECCSSCCCCC--TTGGGCTTCCEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCCCCCG--GGTTCTTCCEEEC
T ss_pred             CCCCEEECCCCCCCCc--cccccCCCCCEEeCcCCcCCC-Cc-cccCCccccccccccccccccc--ccccccccccccc
Confidence            5789999999999864  468899999999999999984 44 4999999999999999987543  4889999999999


Q ss_pred             CCCcCCCCcchhccCCCCCCEEecccccCCCCCCccccCCCCCCEEEccCCcCcccCCcccccCCcccEeecccccceec
Q 046712          114 SNNKLEGEIPVKISNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVAYNQFSGM  193 (566)
Q Consensus       114 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~  193 (566)
                      +++.+++..+  ......+.......+.+.......  .....+........   .....+.............+... .
T Consensus       118 ~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~-~  189 (384)
T d2omza2         118 FNNQITDIDP--LKNLTNLNRLELSSNTISDISALS--GLTSLQQLSFGNQV---TDLKPLANLTTLERLDISSNKVS-D  189 (384)
T ss_dssp             CSSCCCCCGG--GTTCTTCSEEEEEEEEECCCGGGT--TCTTCSEEEEEESC---CCCGGGTTCTTCCEEECCSSCCC-C
T ss_pred             cccccccccc--cccccccccccccccccccccccc--cccccccccccccc---chhhhhccccccccccccccccc-c
Confidence            9998875433  445567778877777665222221  11122222211111   11122333333333333333222 2


Q ss_pred             CCcccCcccCceEecccccccccCCCCCCCCCCCCcEEEcccccccccCcccccccCCCCeeecccccccccccccccCC
Q 046712          194 IPPIYNISSLQYIFIHTNRFHGSVPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINRNLFSGKVSINFSRL  273 (566)
Q Consensus       194 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~  273 (566)
                      ......++.++.+.++++.+++..+..   .+++|++|++++|.+++.  ..+..+++|+.+++.+|.+.+..+  +..+
T Consensus       190 ~~~~~~l~~~~~l~l~~n~i~~~~~~~---~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~~  262 (384)
T d2omza2         190 ISVLAKLTNLESLIATNNQISDITPLG---ILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGL  262 (384)
T ss_dssp             CGGGGGCTTCSEEECCSSCCCCCGGGG---GCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTC
T ss_pred             ccccccccccceeeccCCccCCCCccc---ccCCCCEEECCCCCCCCc--chhhcccccchhccccCccCCCCc--cccc
Confidence            234566778888888888776443322   467899999999988743  357788999999999998875443  7788


Q ss_pred             CCCcEEECCCCccCCcCCCChhhhhhccCCCCCCEEEccCCeeeeecchhHhhhccCCcEEEccCCCCCCCcchhhhccC
Q 046712          274 QNLSRLNLGENNLGTGTTNDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQISDTIPDVIANLV  353 (566)
Q Consensus       274 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~  353 (566)
                      ++|++++++++.+....        .+..++.++.++++++.+.+...   ....+.++.+++++|.+++..  .+..++
T Consensus       263 ~~L~~L~l~~~~l~~~~--------~~~~~~~l~~l~~~~n~l~~~~~---~~~~~~l~~L~ls~n~l~~l~--~l~~l~  329 (384)
T d2omza2         263 TKLTELKLGANQISNIS--------PLAGLTALTNLELNENQLEDISP---ISNLKNLTYLTLYFNNISDIS--PVSSLT  329 (384)
T ss_dssp             TTCSEEECCSSCCCCCG--------GGTTCTTCSEEECCSSCCSCCGG---GGGCTTCSEEECCSSCCSCCG--GGGGCT
T ss_pred             ccCCEeeccCcccCCCC--------ccccccccccccccccccccccc---cchhcccCeEECCCCCCCCCc--ccccCC
Confidence            99999999998876543        36678899999999998875322   233489999999999998653  378899


Q ss_pred             CCCeecccCCcccccccccccCCCCCCEEEccCCcccccCCccccCCCCCCeEeccCc
Q 046712          354 NLNALGVESNQLAGTIPLAIGELKSIQILFLNENFLRGTIPSSLGNLTLLTQLILEVN  411 (566)
Q Consensus       354 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~  411 (566)
                      +|++|++++|.+++. + .+.++++|++|++++|++++..  .+.++++|++|++++|
T Consensus       330 ~L~~L~L~~n~l~~l-~-~l~~l~~L~~L~l~~N~l~~l~--~l~~l~~L~~L~L~~N  383 (384)
T d2omza2         330 KLQRLFFANNKVSDV-S-SLANLTNINWLSAGHNQISDLT--PLANLTRITQLGLNDQ  383 (384)
T ss_dssp             TCCEEECCSSCCCCC-G-GGGGCTTCCEEECCSSCCCBCG--GGTTCTTCSEEECCCE
T ss_pred             CCCEEECCCCCCCCC-h-hHcCCCCCCEEECCCCcCCCCh--hhccCCCCCEeeCCCC
Confidence            999999999999853 3 5889999999999999998543  3888999999999987

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.92  E-value=4.8e-23  Score=194.57  Aligned_cols=278  Identities=20%  Similarity=0.199  Sum_probs=195.8

Q ss_pred             CCCC-CcccccccCCCCCcEEEEEcCCCccccccCccCcCCCCCCEEecCCCcccccCCcccCCCCCCCEEeCCCCcCCC
Q 046712           18 SINL-CQWTGVTCGHRRQRVTGLDLRHQSVGGVLSPFVGNLNFLRSINLPNNSFRGKIPHEVGNLFRLQNLTLTNNYFLG   96 (566)
Q Consensus        18 ~~~~-~~~~~~~~~~~~~~~~~l~l~~~~i~~~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~l~~~~l~~   96 (566)
                      ...| |.|+.++|...            +++. +|..+.  +++++|++++|.++...+.+|.++++|++|++++|.+..
T Consensus         5 p~~c~c~~~~~~C~~~------------~L~~-lP~~l~--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~   69 (305)
T d1xkua_           5 PFRCQCHLRVVQCSDL------------GLEK-VPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISK   69 (305)
T ss_dssp             CTTCEEETTEEECTTS------------CCCS-CCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCC
T ss_pred             CCCCEecCCEEEecCC------------CCCc-cCCCCC--CCCCEEECcCCcCCCcChhHhhccccccccccccccccc
Confidence            3444 78888888642            3443 333342  678889999888885555578888889999998888887


Q ss_pred             cCccccccCCCCcEEEcCCCcCCCCcchhccCCCCCCEEecccccCCCCCCccccCCCCCCEEEccCCcCc--ccCCccc
Q 046712           97 KILTDLSHCSNLMKFEASNNKLEGEIPVKISNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLG--GRIPSTI  174 (566)
Q Consensus        97 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~--~~~~~~l  174 (566)
                      ..+..|.++++|++|++++|+++ .+|..  ....++.|+++++.+.+..+..+.....++.++...+...  ...+..+
T Consensus        70 i~~~~f~~l~~L~~L~l~~n~l~-~l~~~--~~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~  146 (305)
T d1xkua_          70 ISPGAFAPLVKLERLYLSKNQLK-ELPEK--MPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAF  146 (305)
T ss_dssp             BCTTTTTTCTTCCEEECCSSCCS-BCCSS--CCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGG
T ss_pred             cchhhhhCCCccCEecccCCccC-cCccc--hhhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCcccc
Confidence            77788888888999999888887 44433  3457888888888887555555677778888888776543  2344567


Q ss_pred             ccCCcccEeecccccceecCCcccCcccCceEecccccccccCCCCCCCCCCCCcEEEcccccccccCcccccccCCCCe
Q 046712          175 SHVRNLISFNVAYNQFSGMIPPIYNISSLQYIFIHTNRFHGSVPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQG  254 (566)
Q Consensus       175 ~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~  254 (566)
                      ..+++|+.+++++|.+......  .++++++|+++++......+... ..++.+++|++++|.+.+..+..+.++++|++
T Consensus       147 ~~l~~L~~l~l~~n~l~~l~~~--~~~~L~~L~l~~n~~~~~~~~~~-~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~  223 (305)
T d1xkua_         147 QGMKKLSYIRIADTNITTIPQG--LPPSLTELHLDGNKITKVDAASL-KGLNNLAKLGLSFNSISAVDNGSLANTPHLRE  223 (305)
T ss_dssp             GGCTTCCEEECCSSCCCSCCSS--CCTTCSEEECTTSCCCEECTGGG-TTCTTCCEEECCSSCCCEECTTTGGGSTTCCE
T ss_pred             ccccccCccccccCCccccCcc--cCCccCEEECCCCcCCCCChhHh-hcccccccccccccccccccccccccccccee
Confidence            7788888888888876654332  24677777777777664444333 36777888888888777766777777888888


Q ss_pred             eecccccccccccccccCCCCCcEEECCCCccCCcCCCChhhhhhccCCCCCCEEEccCCeee
Q 046712          255 LEINRNLFSGKVSINFSRLQNLSRLNLGENNLGTGTTNDLDFITLLTNCTKLEVLDLHSNRFG  317 (566)
Q Consensus       255 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~  317 (566)
                      |++++|.+... +.++..+++|++|++++|+++..+...+.........++|+.|++++|.+.
T Consensus       224 L~L~~N~L~~l-p~~l~~l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~  285 (305)
T d1xkua_         224 LHLNNNKLVKV-PGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ  285 (305)
T ss_dssp             EECCSSCCSSC-CTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSC
T ss_pred             eeccccccccc-ccccccccCCCEEECCCCccCccChhhccCcchhcccCCCCEEECCCCcCc
Confidence            88888877644 446777788888888888777765544433344555667777777777654

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.90  E-value=3.3e-22  Score=188.71  Aligned_cols=242  Identities=24%  Similarity=0.299  Sum_probs=169.2

Q ss_pred             CCCEEecCCCcccccCCcccCCCCCCCEEeCCCCcCCCcCccccccCCCCcEEEcCCCcCCCCcchhccCCCCCCEEecc
Q 046712           59 FLRSINLPNNSFRGKIPHEVGNLFRLQNLTLTNNYFLGKILTDLSHCSNLMKFEASNNKLEGEIPVKISNLLMLQILNIA  138 (566)
Q Consensus        59 ~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~  138 (566)
                      ..+.++-++.+++ .+|..+.  +++++|++++|+++...+..|.++++|++|++++|.+....+..|..++.|++|+++
T Consensus        11 ~~~~~~C~~~~L~-~lP~~l~--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~   87 (305)
T d1xkua_          11 HLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS   87 (305)
T ss_dssp             ETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             cCCEEEecCCCCC-ccCCCCC--CCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEeccc
Confidence            6788899998888 6777664  689999999999987777789999999999999999997778889999999999999


Q ss_pred             cccCCCCCCccccCCCCCCEEEccCCcCcccCCcccccCCcccEeecccccceecCC---cccCcccCceEecccccccc
Q 046712          139 ENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVAYNQFSGMIP---PIYNISSLQYIFIHTNRFHG  215 (566)
Q Consensus       139 ~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~---~l~~~~~L~~L~l~~~~~~~  215 (566)
                      +|.+. .+|..  ....++.|++.+|.+....+..+.....+..+....+.......   .+..+++|+.+++.++.+. 
T Consensus        88 ~n~l~-~l~~~--~~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~-  163 (305)
T d1xkua_          88 KNQLK-ELPEK--MPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-  163 (305)
T ss_dssp             SSCCS-BCCSS--CCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-
T ss_pred             CCccC-cCccc--hhhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCcc-
Confidence            99988 56654  34689999999999886555566677777777777664432211   4445666777777666654 


Q ss_pred             cCCCCCCCCCCCCcEEEcccccccccCcccccccCCCCeeecccccccccccccccCCCCCcEEECCCCccCCcCCCChh
Q 046712          216 SVPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINRNLFSGKVSINFSRLQNLSRLNLGENNLGTGTTNDLD  295 (566)
Q Consensus       216 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~  295 (566)
                      .++..   .+++|++|++.+|......+..+..++.++.|++++|.+....+..+.++++|++|++++|.+...+.    
T Consensus       164 ~l~~~---~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~~lp~----  236 (305)
T d1xkua_         164 TIPQG---LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPG----  236 (305)
T ss_dssp             SCCSS---CCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCT----
T ss_pred             ccCcc---cCCccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccceeeeccccccccccc----
Confidence            33322   24566666666666555555556666666666666666655555555555666666666665544321    


Q ss_pred             hhhhccCCCCCCEEEccCCeee
Q 046712          296 FITLLTNCTKLEVLDLHSNRFG  317 (566)
Q Consensus       296 ~~~~l~~~~~L~~L~l~~~~~~  317 (566)
                         .+..+++|++|++++|+++
T Consensus       237 ---~l~~l~~L~~L~Ls~N~i~  255 (305)
T d1xkua_         237 ---GLADHKYIQVVYLHNNNIS  255 (305)
T ss_dssp             ---TTTTCSSCCEEECCSSCCC
T ss_pred             ---ccccccCCCEEECCCCccC
Confidence               2444555555555555554

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=2.2e-22  Score=187.63  Aligned_cols=206  Identities=22%  Similarity=0.171  Sum_probs=104.0

Q ss_pred             cCCcEEEccCCCCCCCcchhhhccCCCCeecccCCcccccccccccCCCCCCEEEcc-CCcccccCCccccCCCCCCeEe
Q 046712          329 TTMTEIAIGSNQISDTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSIQILFLN-ENFLRGTIPSSLGNLTLLTQLI  407 (566)
Q Consensus       329 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~-~n~~~~~~~~~~~~~~~L~~L~  407 (566)
                      +.+++|++++|.++...+..|.++++|++|++++|.+....+..+..+..++.+.+. .+.+....+..|.++++|++|+
T Consensus        32 ~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~  111 (284)
T d1ozna_          32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH  111 (284)
T ss_dssp             TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccccccccchhhcccccCCEEe
Confidence            455666666666554444455555666666666665555555555555555555543 2333333344555555566666


Q ss_pred             ccCccccccCCCCCcCCCCCcEEEccCCcceeccchhhhhhcccceEEEccCCcccccCCcCccCCCCCCEEeCcccccc
Q 046712          408 LEVNNLQGKIPPSNGNCQNLILLTTRKNKLSGIVPRQLLRIITLSVLLDLSDNLLSGHFPTKVGNLKNLVSLDISSNMFS  487 (566)
Q Consensus       408 l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~l~  487 (566)
                      +++|.+....+..+..++.|+.+++++|.+.+..+..+..... ++.|++++|.+.+..+.+|..+++|+.+++++|++.
T Consensus       112 l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~-L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~  190 (284)
T d1ozna_         112 LDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGN-LTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA  190 (284)
T ss_dssp             CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT-CCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred             cCCcccccccccccchhcccchhhhccccccccChhHhccccc-hhhcccccCcccccchhhhccccccchhhhhhcccc
Confidence            6555555444444555555555555555554332222222222 244555555554444444445555555555555554


Q ss_pred             ccCCccccCCCCCcEEeCCCCcccccCCcCCcCCCCCCEEeCCCCccc
Q 046712          488 GEIPTTLGGCTSLEYLGMQDNSFTISIPSTLSSLKSITELDLSRNNLS  535 (566)
Q Consensus       488 ~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~  535 (566)
                      +..|..|.++++|++|++++|.+....+++|..+++|++|++++|++.
T Consensus       191 ~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~  238 (284)
T d1ozna_         191 HVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV  238 (284)
T ss_dssp             EECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred             ccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCC
Confidence            444444555555555555555554444444445555555555555444

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=7e-22  Score=184.18  Aligned_cols=207  Identities=24%  Similarity=0.258  Sum_probs=126.1

Q ss_pred             CCCCEEEccCCeeeeecchhHhhhccCCcEEEccCCCCCCCcchhhhccCCCCeeccc-CCcccccccccccCCCCCCEE
Q 046712          304 TKLEVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQISDTIPDVIANLVNLNALGVE-SNQLAGTIPLAIGELKSIQIL  382 (566)
Q Consensus       304 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~-~~~~~~~~~~~~~~~~~L~~L  382 (566)
                      +.+++|++++|+++...+.++... +.|++|+++++.+....+..+..++.+.++.+. .+.+....+..+.++++|++|
T Consensus        32 ~~~~~L~Ls~N~i~~i~~~~f~~l-~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L  110 (284)
T d1ozna_          32 AASQRIFLHGNRISHVPAASFRAC-RNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTL  110 (284)
T ss_dssp             TTCSEEECTTSCCCEECTTTTTTC-TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEE
T ss_pred             CCCCEEECcCCcCCCCCHHHhhcc-ccccccccccccccccccccccccccccccccccccccccccchhhcccccCCEE
Confidence            456666666666664444444433 566666666666665555555556666666554 334444445556666666666


Q ss_pred             EccCCcccccCCccccCCCCCCeEeccCccccccCCCCCcCCCCCcEEEccCCcceeccchhhhhhcccceEEEccCCcc
Q 046712          383 FLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSNGNCQNLILLTTRKNKLSGIVPRQLLRIITLSVLLDLSDNLL  462 (566)
Q Consensus       383 ~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~  462 (566)
                      ++++|.+....+..+..+++|+.+++++|.+.+..+..+..+++|+.|++++|++.+..+..+.....+ +.+++++|.+
T Consensus       111 ~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L-~~l~l~~N~l  189 (284)
T d1ozna_         111 HLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSL-DRLLLHQNRV  189 (284)
T ss_dssp             ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTC-CEEECCSSCC
T ss_pred             ecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhhhcccccc-chhhhhhccc
Confidence            666666654445555556666666666666665555556666666666666666665444444444333 6666666666


Q ss_pred             cccCCcCccCCCCCCEEeCccccccccCCccccCCCCCcEEeCCCCcccc
Q 046712          463 SGHFPTKVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTI  512 (566)
Q Consensus       463 ~~~~~~~~~~~~~L~~L~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~~~~  512 (566)
                      .+..+..|..+++|++|++++|++.+..+..|..+++|++|++++|++..
T Consensus       190 ~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C  239 (284)
T d1ozna_         190 AHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVC  239 (284)
T ss_dssp             CEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEEC
T ss_pred             cccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCCC
Confidence            66666666666666666666666665555566666666666666666553

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=5.7e-21  Score=175.84  Aligned_cols=199  Identities=21%  Similarity=0.201  Sum_probs=150.7

Q ss_pred             cCCcEEEccCCCCCCCcchhhhccCCCCeecccCCcccccccccccCCCCCCEEEccCCcccccCCccccCCCCCCeEec
Q 046712          329 TTMTEIAIGSNQISDTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSIQILFLNENFLRGTIPSSLGNLTLLTQLIL  408 (566)
Q Consensus       329 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l  408 (566)
                      ..+.+++.+++.++. +|..+.  +++++|+|++|.+++..+..|.++++|++|++++|.++. ++ .+..+++|++|++
T Consensus        10 ~~~~~v~C~~~~L~~-iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~L   84 (266)
T d1p9ag_          10 ASHLEVNCDKRNLTA-LPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQ-VDGTLPVLGTLDL   84 (266)
T ss_dssp             TTCCEEECTTSCCSS-CCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-EE-CCSCCTTCCEEEC
T ss_pred             CCCeEEEccCCCCCe-eCcCcC--cCCCEEECcCCcCCCcCHHHhhccccccccccccccccc-cc-ccccccccccccc
Confidence            466778888888874 565442  579999999999987777788999999999999999873 33 4567899999999


Q ss_pred             cCccccccCCCCCcCCCCCcEEEccCCcceeccchhhhhhcccceEEEccCCcccccCCcCccCCCCCCEEeCccccccc
Q 046712          409 EVNNLQGKIPPSNGNCQNLILLTTRKNKLSGIVPRQLLRIITLSVLLDLSDNLLSGHFPTKVGNLKNLVSLDISSNMFSG  488 (566)
Q Consensus       409 ~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~l~~  488 (566)
                      ++|++. ..+..+..+++|+.|+++++.+.+..+..+.....+ +.+++++|.+....+..+..+++|+.|++++|++++
T Consensus        85 s~N~l~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l-~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~  162 (266)
T d1p9ag_          85 SHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGEL-QELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTE  162 (266)
T ss_dssp             CSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTC-CEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSC
T ss_pred             cccccc-ccccccccccccccccccccccceeecccccccccc-ccccccccccceeccccccccccchhcccccccccc
Confidence            999987 456677888899999998888775544444443333 777777777776666666777777777777777776


Q ss_pred             cCCccccCCCCCcEEeCCCCcccccCCcCCcCCCCCCEEeCCCCccc
Q 046712          489 EIPTTLGGCTSLEYLGMQDNSFTISIPSTLSSLKSITELDLSRNNLS  535 (566)
Q Consensus       489 ~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~  535 (566)
                      ..+..|..+++|++|+|++|.++ .+|+++..+++|+.|+|++|+..
T Consensus       163 ~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~~  208 (266)
T d1p9ag_         163 LPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL  208 (266)
T ss_dssp             CCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred             cCccccccccccceeecccCCCc-ccChhHCCCCCCCEEEecCCCCC
Confidence            56666777777777777777777 66777777777777777777665

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=1.7e-20  Score=172.58  Aligned_cols=202  Identities=20%  Similarity=0.200  Sum_probs=165.6

Q ss_pred             cCCCCCCEEEccCCeeeeecchhHhhhccCCcEEEccCCCCCCCcchhhhccCCCCeecccCCcccccccccccCCCCCC
Q 046712          301 TNCTKLEVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQISDTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSIQ  380 (566)
Q Consensus       301 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~  380 (566)
                      .+...+..++.+++.++. +|..+   ++.+++|++++|.+++..+..|..+++|++|++++|+++...  .+..+++|+
T Consensus         7 ~~~~~~~~v~C~~~~L~~-iP~~l---p~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l~--~~~~l~~L~   80 (266)
T d1p9ag_           7 SKVASHLEVNCDKRNLTA-LPPDL---PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQ--VDGTLPVLG   80 (266)
T ss_dssp             ECSTTCCEEECTTSCCSS-CCSCC---CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEE--CCSCCTTCC
T ss_pred             cccCCCeEEEccCCCCCe-eCcCc---CcCCCEEECcCCcCCCcCHHHhhccccccccccccccccccc--ccccccccc
Confidence            345667778888888874 45432   468999999999998766678889999999999999988443  356889999


Q ss_pred             EEEccCCcccccCCccccCCCCCCeEeccCccccccCCCCCcCCCCCcEEEccCCcceeccchhhhhhcccceEEEccCC
Q 046712          381 ILFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSNGNCQNLILLTTRKNKLSGIVPRQLLRIITLSVLLDLSDN  460 (566)
Q Consensus       381 ~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~  460 (566)
                      +|++++|+++ ..+..+..+++|+.|+++++.+.+..+..+..+.+++.|++++|.+....+..+... +.++.+++++|
T Consensus        81 ~L~Ls~N~l~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l-~~l~~l~l~~N  158 (266)
T d1p9ag_          81 TLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPT-PKLEKLSLANN  158 (266)
T ss_dssp             EEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTC-TTCCEEECTTS
T ss_pred             cccccccccc-ccccccccccccccccccccccceeeccccccccccccccccccccceecccccccc-ccchhcccccc
Confidence            9999999987 456678889999999999999887777788889999999999999885544444444 44489999999


Q ss_pred             cccccCCcCccCCCCCCEEeCccccccccCCccccCCCCCcEEeCCCCccc
Q 046712          461 LLSGHFPTKVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFT  511 (566)
Q Consensus       461 ~~~~~~~~~~~~~~~L~~L~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~~~  511 (566)
                      ++.+..+..|..+++|++|++++|+++ .+|..+..+++|+.|+|++|++.
T Consensus       159 ~l~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~~  208 (266)
T d1p9ag_         159 NLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL  208 (266)
T ss_dssp             CCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred             cccccCccccccccccceeecccCCCc-ccChhHCCCCCCCEEEecCCCCC
Confidence            999888888899999999999999998 78887888899999999998765

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.78  E-value=2.5e-16  Score=151.37  Aligned_cols=135  Identities=25%  Similarity=0.352  Sum_probs=69.7

Q ss_pred             cEEEEEcCCCccccccCccCcCCCCCCEEecCCCcccccCCcccCCCCCCCEEeCCCCcCCCcCccccccC-CCCcEEEc
Q 046712           35 RVTGLDLRHQSVGGVLSPFVGNLNFLRSINLPNNSFRGKIPHEVGNLFRLQNLTLTNNYFLGKILTDLSHC-SNLMKFEA  113 (566)
Q Consensus        35 ~~~~l~l~~~~i~~~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l-~~L~~L~l  113 (566)
                      ++++|++++++++. +|+.   .++|++|++++|+++ .+|..+   .+|+.|++++|.++..     ..+ +.|++|++
T Consensus        39 ~l~~LdLs~~~L~~-lp~~---~~~L~~L~Ls~N~l~-~lp~~~---~~L~~L~l~~n~l~~l-----~~lp~~L~~L~L  105 (353)
T d1jl5a_          39 QAHELELNNLGLSS-LPEL---PPHLESLVASCNSLT-ELPELP---QSLKSLLVDNNNLKAL-----SDLPPLLEYLGV  105 (353)
T ss_dssp             TCSEEECTTSCCSC-CCSC---CTTCSEEECCSSCCS-SCCCCC---TTCCEEECCSSCCSCC-----CSCCTTCCEEEC
T ss_pred             CCCEEEeCCCCCCC-CCCC---CCCCCEEECCCCCCc-ccccch---hhhhhhhhhhcccchh-----hhhccccccccc
Confidence            45566777766663 3332   356666677666666 455432   3566666666655422     112 34666666


Q ss_pred             CCCcCCCCcchhccCCCCCCEEecccccCCCCCCccccCCCCCCEEEccCCcCcccCCcccccCCcccEeecccccc
Q 046712          114 SNNKLEGEIPVKISNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVAYNQF  190 (566)
Q Consensus       114 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~  190 (566)
                      ++|.+. .+| .++.+++|++|+++++.+. ..+.   ....+..+.+.++...  .+..+..++.++.+.+.++..
T Consensus       106 ~~n~l~-~lp-~~~~l~~L~~L~l~~~~~~-~~~~---~~~~l~~l~~~~~~~~--~~~~l~~l~~l~~L~l~~n~~  174 (353)
T d1jl5a_         106 SNNQLE-KLP-ELQNSSFLKIIDVDNNSLK-KLPD---LPPSLEFIAAGNNQLE--ELPELQNLPFLTAIYADNNSL  174 (353)
T ss_dssp             CSSCCS-SCC-CCTTCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCS--SCCCCTTCTTCCEEECCSSCC
T ss_pred             cccccc-ccc-chhhhccceeecccccccc-cccc---ccccccchhhcccccc--ccccccccccceecccccccc
Confidence            666665 333 2455666666666665554 1221   2334455555444432  223344455555555555443

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.78  E-value=1.4e-16  Score=153.27  Aligned_cols=86  Identities=24%  Similarity=0.293  Sum_probs=60.0

Q ss_pred             eEEEccCCcccccCCcCccCCCCCCEEeCccccccccCCccccCCCCCcEEeCCCCcccccCCcCCcCCCCCCEEeCCCC
Q 046712          453 VLLDLSDNLLSGHFPTKVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTISIPSTLSSLKSITELDLSRN  532 (566)
Q Consensus       453 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n  532 (566)
                      ...++..+.+.+.    ...+++|++|++++|++. .+|..   +++|++|+|++|.++ .+|+.   +++|++|++++|
T Consensus       267 ~~~~~~~~~~~~~----~~~~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~L~~N~L~-~l~~~---~~~L~~L~L~~N  334 (353)
T d1jl5a_         267 YYLNASSNEIRSL----CDLPPSLEELNVSNNKLI-ELPAL---PPRLERLIASFNHLA-EVPEL---PQNLKQLHVEYN  334 (353)
T ss_dssp             CEEECCSSCCSEE----CCCCTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSS
T ss_pred             cccccccCccccc----cccCCCCCEEECCCCccC-ccccc---cCCCCEEECCCCcCC-ccccc---cCCCCEEECcCC
Confidence            3445555544422    234678999999999988 56643   578999999999988 56643   468999999999


Q ss_pred             ccccccCccccccccCceeecc
Q 046712          533 NLSGHIPQYLENLSFLLFLNMS  554 (566)
Q Consensus       533 ~~~~~~~~~l~~l~~L~~L~l~  554 (566)
                      +++ .+|+...   +|+.|.+.
T Consensus       335 ~L~-~lp~~~~---~L~~L~~~  352 (353)
T d1jl5a_         335 PLR-EFPDIPE---SVEDLRMN  352 (353)
T ss_dssp             CCS-SCCCCCT---TCCEEECC
T ss_pred             cCC-CCCcccc---ccCeeECc
Confidence            987 5665433   46666553

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=1.1e-20  Score=189.45  Aligned_cols=385  Identities=17%  Similarity=0.118  Sum_probs=198.9

Q ss_pred             CCCEEecccccCCCC-CCccccCCCCCCEEEccCCcCcc----cCCcccccCCcccEeecccccceecCCcccCcccCce
Q 046712          131 MLQILNIAENHLKGQ-LPASIGNLSALQEIDVRGNRLGG----RIPSTISHVRNLISFNVAYNQFSGMIPPIYNISSLQY  205 (566)
Q Consensus       131 ~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~i~~----~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~  205 (566)
                      +|++||++.+++++. +...+..+++++.|++++|.++.    .++.++..+++|+.|++++|.+.....          
T Consensus         3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~----------   72 (460)
T d1z7xw1           3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGV----------   72 (460)
T ss_dssp             EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHH----------
T ss_pred             CCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHH----------
Confidence            456666666666531 12233445566666666665542    222334455556666655554431100          


Q ss_pred             EecccccccccCCCCCCCCCCCCcEEEcccccccccC----cccccccCCCCeeecccccccccccccc-----cCCCCC
Q 046712          206 IFIHTNRFHGSVPLDNGVNLPNLRYFSISGNNLTGSL----QDSLSNATNLQGLEINRNLFSGKVSINF-----SRLQNL  276 (566)
Q Consensus       206 L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~----~~~l~~~~~L~~L~l~~~~~~~~~~~~~-----~~~~~L  276 (566)
                               ..+.........+|++|++++|++++..    +..+..+++|++|++++|.+.......+     ......
T Consensus        73 ---------~~l~~~l~~~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~  143 (460)
T d1z7xw1          73 ---------HCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRL  143 (460)
T ss_dssp             ---------HHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCC
T ss_pred             ---------HHHHHHHhcCCCCCCEEECCCCCccccccccccchhhccccccccccccccchhhhhhhhhhccccccccc
Confidence                     0001111112346777777777766432    3345567778888887777654322221     111223


Q ss_pred             cEEECCCCccCCcCCCChhhhhhccCCCCCCEEEccCCeeeeecch----hHhhhccCCcEEEccCCCCCCCc----chh
Q 046712          277 SRLNLGENNLGTGTTNDLDFITLLTNCTKLEVLDLHSNRFGGVLPF----SLANLSTTMTEIAIGSNQISDTI----PDV  348 (566)
Q Consensus       277 ~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~----~~~~~~~~L~~L~l~~~~~~~~~----~~~  348 (566)
                      ..............  .......+...+.++.+.++++........    .+.........+.+..+.+....    ...
T Consensus       144 ~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~  221 (460)
T d1z7xw1         144 EKLQLEYCSLSAAS--CEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGI  221 (460)
T ss_dssp             CEEECTTSCCBGGG--HHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHH
T ss_pred             ccccccccccchhh--hcccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhccccc
Confidence            33343333222111  111223455667788888887765532211    12222345667777777654321    123


Q ss_pred             hhccCCCCeecccCCccccc-----ccccccCCCCCCEEEccCCccccc----CCccccCCCCCCeEeccCccccccCCC
Q 046712          349 IANLVNLNALGVESNQLAGT-----IPLAIGELKSIQILFLNENFLRGT----IPSSLGNLTLLTQLILEVNNLQGKIPP  419 (566)
Q Consensus       349 ~~~l~~L~~L~l~~~~~~~~-----~~~~~~~~~~L~~L~l~~n~~~~~----~~~~~~~~~~L~~L~l~~~~l~~~~~~  419 (566)
                      +...+.++.+++.++.+...     ..........++.+++++|.+...    ....+...+.++.+++++|++......
T Consensus       222 l~~~~~~~~l~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~  301 (460)
T d1z7xw1         222 VASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGAR  301 (460)
T ss_dssp             HHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHH
T ss_pred             ccccccccccchhhccccccccchhhcccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            45677888888888876422     223344567888888888877532    122344567788888888876532111


Q ss_pred             C-----CcCCCCCcEEEccCCcceeccchhhhhh---cccceEEEccCCcccccCCc----Cc-cCCCCCCEEeCccccc
Q 046712          420 S-----NGNCQNLILLTTRKNKLSGIVPRQLLRI---ITLSVLLDLSDNLLSGHFPT----KV-GNLKNLVSLDISSNMF  486 (566)
Q Consensus       420 ~-----~~~~~~L~~L~l~~~~~~~~~~~~~~~~---~~~l~~L~l~~~~~~~~~~~----~~-~~~~~L~~L~ls~~~l  486 (566)
                      .     ......|+.+++++|.+.......+...   ...++.|++++|++.+....    .+ ...+.|++|++++|++
T Consensus       302 ~l~~~l~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i  381 (460)
T d1z7xw1         302 LLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDV  381 (460)
T ss_dssp             HHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCC
T ss_pred             hhhccccccccccccccccccchhhhhhhhcccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCC
Confidence            1     1133567777777777664433333322   12346666666665432211    12 1344566666666666


Q ss_pred             ccc----CCccccCCCCCcEEeCCCCcccccCCcC----Cc-CCCCCCEEeCCCCcccc
Q 046712          487 SGE----IPTTLGGCTSLEYLGMQDNSFTISIPST----LS-SLKSITELDLSRNNLSG  536 (566)
Q Consensus       487 ~~~----~~~~~~~~~~L~~L~L~~n~~~~~~~~~----l~-~l~~L~~L~l~~n~~~~  536 (566)
                      ++.    ++..+..+++|++|+|++|.+++.....    +. +...|+.|++.++.+..
T Consensus       382 ~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~~~~  440 (460)
T d1z7xw1         382 SDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSE  440 (460)
T ss_dssp             CHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCH
T ss_pred             ChHHHHHHHHHHhcCCCCCEEECCCCcCCHHHHHHHHHHHHhCCCccCEEECCCCCCCH
Confidence            532    2233445566666666666665422211    21 22356666666666554

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=4.6e-21  Score=192.20  Aligned_cols=360  Identities=16%  Similarity=0.158  Sum_probs=173.0

Q ss_pred             CcEEEEEcCCCcccccc-CccCcCCCCCCEEecCCCccccc----CCcccCCCCCCCEEeCCCCcCCCcCcccc----c-
Q 046712           34 QRVTGLDLRHQSVGGVL-SPFVGNLNFLRSINLPNNSFRGK----IPHEVGNLFRLQNLTLTNNYFLGKILTDL----S-  103 (566)
Q Consensus        34 ~~~~~l~l~~~~i~~~~-~~~~~~l~~L~~L~ls~~~l~~~----~~~~~~~l~~L~~L~l~~~~l~~~~~~~~----~-  103 (566)
                      .+++.||++++++++.. .+.+..++++++|+|++|.+++.    +..++..+++|++|++++|.++......+    . 
T Consensus         2 ~~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~   81 (460)
T d1z7xw1           2 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT   81 (460)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred             CCCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhc
Confidence            46788888888887542 33456778888888888877643    34456677778888888777643222222    1 


Q ss_pred             cCCCCcEEEcCCCcCCCC----cchhccCCCCCCEEecccccCCCCCCccc-----cCCCCCCEEEccCCcCccc----C
Q 046712          104 HCSNLMKFEASNNKLEGE----IPVKISNLLMLQILNIAENHLKGQLPASI-----GNLSALQEIDVRGNRLGGR----I  170 (566)
Q Consensus       104 ~l~~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~l~~~~~~~~~~~~~-----~~l~~L~~L~l~~~~i~~~----~  170 (566)
                      ...+|++|++++|++++.    ++..+..+++|++|++++|.+.......+     ...................    .
T Consensus        82 ~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  161 (460)
T d1z7xw1          82 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL  161 (460)
T ss_dssp             TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred             CCCCCCEEECCCCCccccccccccchhhccccccccccccccchhhhhhhhhhcccccccccccccccccccchhhhccc
Confidence            234677777777766532    23345556666666666665542111111     0111222222222221100    0


Q ss_pred             CcccccCCcccEeecccccceecCCcccCcccCceEecccccccccCCCCCCCCCCCCcEEEccccccccc----Ccccc
Q 046712          171 PSTISHVRNLISFNVAYNQFSGMIPPIYNISSLQYIFIHTNRFHGSVPLDNGVNLPNLRYFSISGNNLTGS----LQDSL  246 (566)
Q Consensus       171 ~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~----~~~~l  246 (566)
                      ...+.....++.+.++++.......                  . ...............+.+..+.+...    ....+
T Consensus       162 ~~~l~~~~~~~~~~ls~~~~~~~~~------------------~-~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l  222 (460)
T d1z7xw1         162 ASVLRAKPDFKELTVSNNDINEAGV------------------R-VLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIV  222 (460)
T ss_dssp             HHHHHHCTTCCEEECCSSBCHHHHH------------------H-HHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHH
T ss_pred             ccccccccccccccccccccccccc------------------c-ccccccccccccccccccccccccchhhhcccccc
Confidence            0011122333333333322211000                  0 00000000112334455554433311    11233


Q ss_pred             cccCCCCeeeccccccccc-----ccccccCCCCCcEEECCCCccCCcCCCChhhhhhccCCCCCCEEEccCCeeeeecc
Q 046712          247 SNATNLQGLEINRNLFSGK-----VSINFSRLQNLSRLNLGENNLGTGTTNDLDFITLLTNCTKLEVLDLHSNRFGGVLP  321 (566)
Q Consensus       247 ~~~~~L~~L~l~~~~~~~~-----~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~  321 (566)
                      ...+.++.+.+.++.+...     ..........++.+++++|.+......  .....+...+.++.+++++|.+.+...
T Consensus       223 ~~~~~~~~l~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~--~~~~~l~~~~~l~~l~l~~n~i~~~~~  300 (460)
T d1z7xw1         223 ASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCG--DLCRVLRAKESLKELSLAGNELGDEGA  300 (460)
T ss_dssp             HHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHH--HHHHHHHHCTTCCEEECTTCCCHHHHH
T ss_pred             cccccccccchhhccccccccchhhcccccccccccccccccccccccccc--ccccccccccccccccccccccccccc
Confidence            4456667777766654321     112234456677777777655432211  112334456677777777776654333


Q ss_pred             hhHhh----hccCCcEEEccCCCCCCCcc----hhhhccCCCCeecccCCcccccc----ccccc-CCCCCCEEEccCCc
Q 046712          322 FSLAN----LSTTMTEIAIGSNQISDTIP----DVIANLVNLNALGVESNQLAGTI----PLAIG-ELKSIQILFLNENF  388 (566)
Q Consensus       322 ~~~~~----~~~~L~~L~l~~~~~~~~~~----~~~~~l~~L~~L~l~~~~~~~~~----~~~~~-~~~~L~~L~l~~n~  388 (566)
                      ..+..    ....++.+.+.++.++....    ..+..+++|++|++++|.+.+..    ...+. ..+.|++|++++|.
T Consensus       301 ~~l~~~l~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~  380 (460)
T d1z7xw1         301 RLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCD  380 (460)
T ss_dssp             HHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC
T ss_pred             chhhccccccccccccccccccchhhhhhhhcccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCC
Confidence            22221    22356666666665553322    22334456666666666654321    12222 34456666666666


Q ss_pred             cccc----CCccccCCCCCCeEeccCcccc
Q 046712          389 LRGT----IPSSLGNLTLLTQLILEVNNLQ  414 (566)
Q Consensus       389 ~~~~----~~~~~~~~~~L~~L~l~~~~l~  414 (566)
                      +++.    +...+..+++|++|++++|+++
T Consensus       381 i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~  410 (460)
T d1z7xw1         381 VSDSSCSSLAATLLANHSLRELDLSNNCLG  410 (460)
T ss_dssp             CCHHHHHHHHHHHHHCCCCCEEECCSSSCC
T ss_pred             CChHHHHHHHHHHhcCCCCCEEECCCCcCC
Confidence            6532    2233444566666666666554

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=1.3e-17  Score=151.19  Aligned_cols=202  Identities=18%  Similarity=0.081  Sum_probs=114.3

Q ss_pred             CCCeecccCCcccccccccccCCCCCCEEEccCCcccccC-CccccCCCCCCeEeccC-ccccccCCCCCcCCCCCcEEE
Q 046712          354 NLNALGVESNQLAGTIPLAIGELKSIQILFLNENFLRGTI-PSSLGNLTLLTQLILEV-NNLQGKIPPSNGNCQNLILLT  431 (566)
Q Consensus       354 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~-~~~~~~~~~L~~L~l~~-~~l~~~~~~~~~~~~~L~~L~  431 (566)
                      ++++|++++|.++...+.+|.++++|++|++++|.+...+ +..|..++.++++.+.. +.+....+..+..+++|+.++
T Consensus        30 ~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l~  109 (242)
T d1xwdc1          30 NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLL  109 (242)
T ss_dssp             CCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCEEE
T ss_pred             CCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccccccccccccccccccccccccc
Confidence            4555555555554333344555555555555555544322 23444555555555433 334434444455555555555


Q ss_pred             ccCCcceeccchhhhhhcccceEEEccCCcccccCCcCccCCC-CCCEEeCccccccccCCccccCCCCCcEE-eCCCCc
Q 046712          432 TRKNKLSGIVPRQLLRIITLSVLLDLSDNLLSGHFPTKVGNLK-NLVSLDISSNMFSGEIPTTLGGCTSLEYL-GMQDNS  509 (566)
Q Consensus       432 l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~-~L~~L~ls~~~l~~~~~~~~~~~~~L~~L-~L~~n~  509 (566)
                      ++++.+....+.........+..+...++.+.......|..++ .++.|++++|+++...+..+ ..++++++ .+.+|.
T Consensus       110 l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~i~~~~~-~~~~l~~~~~l~~n~  188 (242)
T d1xwdc1         110 ISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAF-NGTQLDELNLSDNNN  188 (242)
T ss_dssp             EESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTTT-TTCCEEEEECTTCTT
T ss_pred             cchhhhcccccccccccccccccccccccccccccccccccccccceeeecccccccccccccc-cchhhhccccccccc
Confidence            5555544332222222223334444555555555555555543 67788888888874333333 34555555 456677


Q ss_pred             ccccCCcCCcCCCCCCEEeCCCCccccccCccccccccCceeecccC
Q 046712          510 FTISIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLLFLNMSYN  556 (566)
Q Consensus       510 ~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n  556 (566)
                      ++...++.|.++++|++|++++|+++...+..|.+++.|+.+++.+.
T Consensus       189 l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~~~~l  235 (242)
T d1xwdc1         189 LEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNL  235 (242)
T ss_dssp             CCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEESSSEESS
T ss_pred             cccccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCcccccCcCCCC
Confidence            77544556788888888888888888665667888888888777654

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.74  E-value=2e-17  Score=147.97  Aligned_cols=190  Identities=25%  Similarity=0.308  Sum_probs=128.0

Q ss_pred             hhccCCCCeecccCCcccccccccccCCCCCCEEEccCCcccccCCccccCCCCCCeEeccCccccccCCCCCcCCCCCc
Q 046712          349 IANLVNLNALGVESNQLAGTIPLAIGELKSIQILFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSNGNCQNLI  428 (566)
Q Consensus       349 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~  428 (566)
                      +..+.+|++|++.+|.+++.  ..+..+++|++|++++|.+++.  ..+..+++|+.+++++|.++. + ..+..+++|+
T Consensus        37 ~~~l~~L~~L~l~~~~i~~l--~~l~~l~~L~~L~ls~n~i~~~--~~l~~l~~l~~l~~~~n~~~~-i-~~l~~l~~L~  110 (227)
T d1h6ua2          37 QADLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKDNQITDL--APLKNLTKITELELSGNPLKN-V-SAIAGLQSIK  110 (227)
T ss_dssp             HHHHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCC--GGGTTCCSCCEEECCSCCCSC-C-GGGTTCTTCC
T ss_pred             HHHcCCcCEEECCCCCCCcc--hhHhcCCCCcEeecCCceeecc--ccccccccccccccccccccc-c-cccccccccc
Confidence            34556666666666666532  2456666666666666666532  235666666666666666542 2 2355666777


Q ss_pred             EEEccCCcceeccchhhhhhcccceEEEccCCcccccCCcCccCCCCCCEEeCccccccccCCccccCCCCCcEEeCCCC
Q 046712          429 LLTTRKNKLSGIVPRQLLRIITLSVLLDLSDNLLSGHFPTKVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDN  508 (566)
Q Consensus       429 ~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~l~~~~~~~~~~~~~L~~L~L~~n  508 (566)
                      .++++++...+..  .+... .....+.++++.+...  ..+..+++|+.|++++|.+.+.  ..+.++++|++|++++|
T Consensus       111 ~l~l~~~~~~~~~--~~~~~-~~~~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~n~~~~~--~~l~~l~~L~~L~Ls~n  183 (227)
T d1h6ua2         111 TLDLTSTQITDVT--PLAGL-SNLQVLYLDLNQITNI--SPLAGLTNLQYLSIGNAQVSDL--TPLANLSKLTTLKADDN  183 (227)
T ss_dssp             EEECTTSCCCCCG--GGTTC-TTCCEEECCSSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSS
T ss_pred             ccccccccccccc--hhccc-cchhhhhchhhhhchh--hhhccccccccccccccccccc--hhhcccccceecccCCC
Confidence            7777666654322  22222 2336677777766532  2356788999999999988633  33888999999999999


Q ss_pred             cccccCCcCCcCCCCCCEEeCCCCccccccCccccccccCceeeccc
Q 046712          509 SFTISIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLLFLNMSY  555 (566)
Q Consensus       509 ~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~  555 (566)
                      .+++ + ..++.+++|++|++++|++++..|  +.++++|+.|++++
T Consensus       184 ~l~~-l-~~l~~l~~L~~L~Ls~N~lt~i~~--l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         184 KISD-I-SPLASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTN  226 (227)
T ss_dssp             CCCC-C-GGGGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEE
T ss_pred             ccCC-C-hhhcCCCCCCEEECcCCcCCCCcc--cccCCCCCEEEeeC
Confidence            9884 3 348889999999999999885433  78899999999874

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.70  E-value=2.1e-16  Score=141.21  Aligned_cols=202  Identities=20%  Similarity=0.290  Sum_probs=111.9

Q ss_pred             EEcCCCccccccCccCcCCCCCCEEecCCCcccccCCcccCCCCCCCEEeCCCCcCCCcCccccccCCCCcEEEcCCCcC
Q 046712           39 LDLRHQSVGGVLSPFVGNLNFLRSINLPNNSFRGKIPHEVGNLFRLQNLTLTNNYFLGKILTDLSHCSNLMKFEASNNKL  118 (566)
Q Consensus        39 l~l~~~~i~~~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~  118 (566)
                      +++..+.+++..  .++.+++|++|++++|.+++ ++ .+..+++|++|++++|.+++..  .+..+++|+++++++|.+
T Consensus        24 ~~l~~~~~~d~~--~~~~l~~L~~L~l~~~~i~~-l~-~l~~l~~L~~L~ls~n~i~~~~--~l~~l~~l~~l~~~~n~~   97 (227)
T d1h6ua2          24 IAAGKSNVTDTV--TQADLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLA--PLKNLTKITELELSGNPL   97 (227)
T ss_dssp             HHTTCSSTTSEE--CHHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCG--GGTTCCSCCEEECCSCCC
T ss_pred             HHhCCCCcCCcC--CHHHcCCcCEEECCCCCCCc-ch-hHhcCCCCcEeecCCceeeccc--cccccccccccccccccc
Confidence            344445555433  34566677777777777663 32 4666777777777777665432  266667777777777666


Q ss_pred             CCCcchhccCCCCCCEEecccccCCCCCCccccCCCCCCEEEccCCcCcccCCcccccCCcccEeecccccceecCCccc
Q 046712          119 EGEIPVKISNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVAYNQFSGMIPPIY  198 (566)
Q Consensus       119 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~  198 (566)
                      ++ ++ .+.++++|++++++++...+  ...+...+.++.+.++++.+..  ...+...++|+.|++++|.+.... .+.
T Consensus        98 ~~-i~-~l~~l~~L~~l~l~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~L~~L~l~~n~~~~~~-~l~  170 (227)
T d1h6ua2          98 KN-VS-AIAGLQSIKTLDLTSTQITD--VTPLAGLSNLQVLYLDLNQITN--ISPLAGLTNLQYLSIGNAQVSDLT-PLA  170 (227)
T ss_dssp             SC-CG-GGTTCTTCCEEECTTSCCCC--CGGGTTCTTCCEEECCSSCCCC--CGGGGGCTTCCEEECCSSCCCCCG-GGT
T ss_pred             cc-cc-cccccccccccccccccccc--cchhccccchhhhhchhhhhch--hhhhccccccccccccccccccch-hhc
Confidence            53 22 45666777777776665542  2335556666666666665542  223455566666666655443211 233


Q ss_pred             CcccCceEecccccccccCCCCCCCCCCCCcEEEcccccccccCcccccccCCCCeeecccccccccccccccCCCCCcE
Q 046712          199 NISSLQYIFIHTNRFHGSVPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINRNLFSGKVSINFSRLQNLSR  278 (566)
Q Consensus       199 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~  278 (566)
                                               .+++|++|++++|++++.  ..++.+++|++|++++|++++..+  +..+++|+.
T Consensus       171 -------------------------~l~~L~~L~Ls~n~l~~l--~~l~~l~~L~~L~Ls~N~lt~i~~--l~~l~~L~~  221 (227)
T d1h6ua2         171 -------------------------NLSKLTTLKADDNKISDI--SPLASLPNLIEVHLKNNQISDVSP--LANTSNLFI  221 (227)
T ss_dssp             -------------------------TCTTCCEEECCSSCCCCC--GGGGGCTTCCEEECTTSCCCBCGG--GTTCTTCCE
T ss_pred             -------------------------ccccceecccCCCccCCC--hhhcCCCCCCEEECcCCcCCCCcc--cccCCCCCE
Confidence                                     345555555555554432  124555556666665555544322  455555655


Q ss_pred             EECC
Q 046712          279 LNLG  282 (566)
Q Consensus       279 L~l~  282 (566)
                      |+++
T Consensus       222 L~ls  225 (227)
T d1h6ua2         222 VTLT  225 (227)
T ss_dssp             EEEE
T ss_pred             EEee
Confidence            5553

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=9e-17  Score=145.47  Aligned_cols=219  Identities=14%  Similarity=0.116  Sum_probs=148.6

Q ss_pred             CEEEccCCeeeeecchhHhhhccCCcEEEccCCCCCCCcchhhhccCCCCeecccCCccccc-ccccccCCCCCCEEEcc
Q 046712          307 EVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQISDTIPDVIANLVNLNALGVESNQLAGT-IPLAIGELKSIQILFLN  385 (566)
Q Consensus       307 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~  385 (566)
                      +.++.++..++ .+|..+   ++.+++|++++|.++...+..|.++++|++|++++|.+.+. .+.+|.+++.++++.+.
T Consensus        11 ~~i~c~~~~l~-~iP~~l---~~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~   86 (242)
T d1xwdc1          11 RVFLCQESKVT-EIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE   86 (242)
T ss_dssp             SEEEEESCSCS-SCCSCS---CSCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEE
T ss_pred             CEEEEeCCCCC-CcCCCC---CCCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccccc
Confidence            44555555444 333222   35677777777777654455677888888888888877643 34567788888888876


Q ss_pred             C-CcccccCCccccCCCCCCeEeccCccccccCCC-CCcCCCCCcEEEccCCcceeccchhhhhhcccceEEEccCCccc
Q 046712          386 E-NFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPP-SNGNCQNLILLTTRKNKLSGIVPRQLLRIITLSVLLDLSDNLLS  463 (566)
Q Consensus       386 ~-n~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~  463 (566)
                      . +.+....+..|..+++|+.++++++.+....+. .+..+..++.+...++.+....+..+......++.++++++.+.
T Consensus        87 ~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~  166 (242)
T d1xwdc1          87 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ  166 (242)
T ss_dssp             CCTTCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC
T ss_pred             ccccccccccccccccccccccccchhhhcccccccccccccccccccccccccccccccccccccccceeeeccccccc
Confidence            4 456556667788888888888888887643222 23345555555666666665556666666666688899999888


Q ss_pred             ccCCcCccCCCCCCEE-eCccccccccCCccccCCCCCcEEeCCCCcccccCCcCCcCCCCCCEEeCC
Q 046712          464 GHFPTKVGNLKNLVSL-DISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTISIPSTLSSLKSITELDLS  530 (566)
Q Consensus       464 ~~~~~~~~~~~~L~~L-~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~  530 (566)
                      ......+. .++++++ ++++|.++...+..|.++++|++|+|++|+++...+.+|.++++|+.+++.
T Consensus       167 ~i~~~~~~-~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~~~  233 (242)
T d1xwdc1         167 EIHNCAFN-GTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTY  233 (242)
T ss_dssp             EECTTTTT-TCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEESSSEE
T ss_pred             cccccccc-chhhhccccccccccccccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCcccccCcCC
Confidence            66665554 4555555 567778884445568999999999999999986555667777777766654

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=3.2e-17  Score=151.57  Aligned_cols=180  Identities=16%  Similarity=0.117  Sum_probs=91.7

Q ss_pred             CCCCeecccCCccccc-ccccccCCCCCCEEEccCCcccccCCccccCCCCCCeEeccCcc-ccccC-CCCCcCCCCCcE
Q 046712          353 VNLNALGVESNQLAGT-IPLAIGELKSIQILFLNENFLRGTIPSSLGNLTLLTQLILEVNN-LQGKI-PPSNGNCQNLIL  429 (566)
Q Consensus       353 ~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~-l~~~~-~~~~~~~~~L~~  429 (566)
                      .+|++|++++|.++.. ....+..+++|++|++++|.+++.....+..+++|++|++++|. ++... ......+++|++
T Consensus        46 ~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~  125 (284)
T d2astb2          46 FRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDE  125 (284)
T ss_dssp             BCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCE
T ss_pred             CCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccc
Confidence            4455555555554322 22234455555555555555544444444455555555555542 22111 111224555555


Q ss_pred             EEccCCc-ceec-cchhhhhhcccceEEEccCCc--ccccCCc-CccCCCCCCEEeCcccc-ccccCCccccCCCCCcEE
Q 046712          430 LTTRKNK-LSGI-VPRQLLRIITLSVLLDLSDNL--LSGHFPT-KVGNLKNLVSLDISSNM-FSGEIPTTLGGCTSLEYL  503 (566)
Q Consensus       430 L~l~~~~-~~~~-~~~~~~~~~~~l~~L~l~~~~--~~~~~~~-~~~~~~~L~~L~ls~~~-l~~~~~~~~~~~~~L~~L  503 (566)
                      |++++|. +++. ....+....+.++.|+++++.  +.+.... ....+++|++|++++|. +++.....+..+++|++|
T Consensus       126 L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L  205 (284)
T d2astb2         126 LNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHL  205 (284)
T ss_dssp             EECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEE
T ss_pred             cccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCcCCEE
Confidence            5555543 2211 112233333444666666542  2221111 22456777777777653 555555566677777777


Q ss_pred             eCCCC-cccccCCcCCcCCCCCCEEeCCCC
Q 046712          504 GMQDN-SFTISIPSTLSSLKSITELDLSRN  532 (566)
Q Consensus       504 ~L~~n-~~~~~~~~~l~~l~~L~~L~l~~n  532 (566)
                      ++++| .+++.....++.+|+|+.|++++|
T Consensus       206 ~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         206 SLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             ECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             ECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence            77775 455555555666777777777776

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.66  E-value=1.1e-15  Score=133.13  Aligned_cols=176  Identities=28%  Similarity=0.390  Sum_probs=115.9

Q ss_pred             EccCCCCCCCcchhhhccCCCCeecccCCcccccccccccCCCCCCEEEccCCcccccCCccccCCCCCCeEeccCcccc
Q 046712          335 AIGSNQISDTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSIQILFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQ  414 (566)
Q Consensus       335 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~  414 (566)
                      .+..+.+++...  ...++++++|++++|.+...  +.++.+++|++|++++|.+++..  .+.++++|++|++++|.+.
T Consensus        24 ~l~~~~~~~~~~--~~~l~~l~~L~l~~~~i~~l--~~l~~l~nL~~L~Ls~N~l~~~~--~l~~l~~L~~L~l~~n~~~   97 (199)
T d2omxa2          24 VLGKTNVTDTVS--QTDLDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTDIT--PLKNLTKLVDILMNNNQIA   97 (199)
T ss_dssp             HTTCSSTTSEEC--HHHHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCC
T ss_pred             HhCCCCCCCccC--HHHhcCCCEEECCCCCCCCc--cccccCCCcCcCccccccccCcc--cccCCcccccccccccccc
Confidence            344444443322  23567777777777777642  34667777777777777776332  3667777777777777665


Q ss_pred             ccCCCCCcCCCCCcEEEccCCcceeccchhhhhhcccceEEEccCCcccccCCcCccCCCCCCEEeCccccccccCCccc
Q 046712          415 GKIPPSNGNCQNLILLTTRKNKLSGIVPRQLLRIITLSVLLDLSDNLLSGHFPTKVGNLKNLVSLDISSNMFSGEIPTTL  494 (566)
Q Consensus       415 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~l~~~~~~~~  494 (566)
                      .. + .+..++.|+.|+++++....                           ...+..+++|+.|++++|.+. .+ ..+
T Consensus        98 ~~-~-~l~~l~~L~~L~l~~~~~~~---------------------------~~~~~~l~~L~~L~l~~n~l~-~~-~~l  146 (199)
T d2omxa2          98 DI-T-PLANLTNLTGLTLFNNQITD---------------------------IDPLKNLTNLNRLELSSNTIS-DI-SAL  146 (199)
T ss_dssp             CC-G-GGTTCTTCSEEECCSSCCCC---------------------------CGGGTTCTTCSEEECCSSCCC-CC-GGG
T ss_pred             cc-c-cccccccccccccccccccc---------------------------ccccchhhhhHHhhhhhhhhc-cc-ccc
Confidence            22 2 25566666666665555431                           123456788888888888876 33 347


Q ss_pred             cCCCCCcEEeCCCCcccccCCcCCcCCCCCCEEeCCCCccccccCccccccccCcee
Q 046712          495 GGCTSLEYLGMQDNSFTISIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLLFL  551 (566)
Q Consensus       495 ~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L  551 (566)
                      ..+++|++|++.+|.+++.  +.+.++++|++|++++|++++ ++ .+..+++|++|
T Consensus       147 ~~~~~L~~L~l~~n~l~~l--~~l~~l~~L~~L~ls~N~i~~-i~-~l~~L~~L~~L  199 (199)
T d2omxa2         147 SGLTSLQQLNFSSNQVTDL--KPLANLTTLERLDISSNKVSD-IS-VLAKLTNLESL  199 (199)
T ss_dssp             TTCTTCSEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCC-CG-GGGGCTTCSEE
T ss_pred             cccccccccccccccccCC--ccccCCCCCCEEECCCCCCCC-Cc-cccCCCCCCcC
Confidence            7788888888888888742  357888888888888888874 33 46778888765

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.65  E-value=1.5e-15  Score=132.28  Aligned_cols=148  Identities=22%  Similarity=0.371  Sum_probs=69.7

Q ss_pred             CCCCCCEEecCCCcccccCCcccCCCCCCCEEeCCCCcCCCcCccccccCCCCcEEEcCCCcCCCCcchhccCCCCCCEE
Q 046712           56 NLNFLRSINLPNNSFRGKIPHEVGNLFRLQNLTLTNNYFLGKILTDLSHCSNLMKFEASNNKLEGEIPVKISNLLMLQIL  135 (566)
Q Consensus        56 ~l~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L  135 (566)
                      .++++++|++++|.++. + +.+..+++|++|++++|++++..  .+.++++|++|++++|.+.. ++ .+.+++.|+.|
T Consensus        38 ~l~~l~~L~l~~~~i~~-l-~~l~~l~nL~~L~Ls~N~l~~~~--~l~~l~~L~~L~l~~n~~~~-~~-~l~~l~~L~~L  111 (199)
T d2omxa2          38 DLDQVTTLQADRLGIKS-I-DGVEYLNNLTQINFSNNQLTDIT--PLKNLTKLVDILMNNNQIAD-IT-PLANLTNLTGL  111 (199)
T ss_dssp             HHTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCC-CG-GGTTCTTCSEE
T ss_pred             HhcCCCEEECCCCCCCC-c-cccccCCCcCcCccccccccCcc--cccCCccccccccccccccc-cc-ccccccccccc
Confidence            34455555555555442 2 12444555555555555544322  24455555555555554442 22 24455555555


Q ss_pred             ecccccCCCCCCccccCCCCCCEEEccCCcCcccCCcccccCCcccEeecccccceecCCcccCcccCceEeccccccc
Q 046712          136 NIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVAYNQFSGMIPPIYNISSLQYIFIHTNRFH  214 (566)
Q Consensus       136 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~  214 (566)
                      +++++....  ...+..+++|+.|++++|.+..  ...+..+++++.|++.+|.+.+. +.+..+++|++|++++|+++
T Consensus       112 ~l~~~~~~~--~~~~~~l~~L~~L~l~~n~l~~--~~~l~~~~~L~~L~l~~n~l~~l-~~l~~l~~L~~L~ls~N~i~  185 (199)
T d2omxa2         112 TLFNNQITD--IDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLNFSSNQVTDL-KPLANLTTLERLDISSNKVS  185 (199)
T ss_dssp             ECCSSCCCC--CGGGTTCTTCSEEECCSSCCCC--CGGGTTCTTCSEEECCSSCCCCC-GGGTTCTTCCEEECCSSCCC
T ss_pred             ccccccccc--ccccchhhhhHHhhhhhhhhcc--cccccccccccccccccccccCC-ccccCCCCCCEEECCCCCCC
Confidence            555544431  2234445555555555555431  12344555555555555544432 23445555555555555544

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.65  E-value=3.1e-16  Score=135.87  Aligned_cols=123  Identities=18%  Similarity=0.240  Sum_probs=86.3

Q ss_pred             CCCccccccCccCcCCCCCCEEecCCCccccc-CCcccCCCCCCCEEeCCCCcCCCcCccccccCCCCcEEEcCCCcCCC
Q 046712           42 RHQSVGGVLSPFVGNLNFLRSINLPNNSFRGK-IPHEVGNLFRLQNLTLTNNYFLGKILTDLSHCSNLMKFEASNNKLEG  120 (566)
Q Consensus        42 ~~~~i~~~~~~~~~~l~~L~~L~ls~~~l~~~-~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~  120 (566)
                      ++++++. +|..+.  +++++|++++|.|+.. .+..|.++++|++|++++|.+....+..+..+++|++|++++|++..
T Consensus        16 s~~~L~~-iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~~   92 (192)
T d1w8aa_          16 TGRGLKE-IPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKE   92 (192)
T ss_dssp             TTSCCSS-CCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCE
T ss_pred             eCCCcCc-cCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeeccccccc
Confidence            4445553 333332  5778888888887643 34556777788888888877777777777777778888888877776


Q ss_pred             CcchhccCCCCCCEEecccccCCCCCCccccCCCCCCEEEccCCcCc
Q 046712          121 EIPVKISNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLG  167 (566)
Q Consensus       121 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~  167 (566)
                      ..+..|.++++|++|+|++|.+.+..+.+|..+++|++|++++|.+.
T Consensus        93 l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~  139 (192)
T d1w8aa_          93 ISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             ECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred             cCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccc
Confidence            66666777777777777777777555666777777777777777664

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.64  E-value=1.6e-15  Score=133.22  Aligned_cols=165  Identities=21%  Similarity=0.312  Sum_probs=84.2

Q ss_pred             CCCCCCEEecCCCcccccCCcccCCCCCCCEEeCCCCcCCCcCccccccCCCCcEEEcCCCcCCCCcchhccCCCCCCEE
Q 046712           56 NLNFLRSINLPNNSFRGKIPHEVGNLFRLQNLTLTNNYFLGKILTDLSHCSNLMKFEASNNKLEGEIPVKISNLLMLQIL  135 (566)
Q Consensus        56 ~l~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L  135 (566)
                      .+..|++|++++|.+++ ++ .+..+++|++|++++|++++..  .++.+++|++|++++|++++ ++ .+..+++|+.|
T Consensus        44 ~L~~L~~L~l~~~~i~~-l~-~l~~l~~L~~L~L~~n~i~~l~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L  117 (210)
T d1h6ta2          44 ELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIK--PLANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSL  117 (210)
T ss_dssp             HHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEE
T ss_pred             HhcCccEEECcCCCCCC-ch-hHhhCCCCCEEeCCCccccCcc--ccccCccccccccccccccc-cc-ccccccccccc
Confidence            34556666666665552 22 2555566666666666554322  24555666666666665552 22 35555566666


Q ss_pred             ecccccCCCCCCccccCCCCCCEEEccCCcCcccCCcccccCCcccEeecccccceecCCcccCcccCceEecccccccc
Q 046712          136 NIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVAYNQFSGMIPPIYNISSLQYIFIHTNRFHG  215 (566)
Q Consensus       136 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~  215 (566)
                      +++++.+. . ...+..+++++.+++++|.++.  +..+..+++|+.+++++|.+.+. +.+.                 
T Consensus       118 ~l~~~~~~-~-~~~l~~l~~l~~l~~~~n~l~~--~~~~~~l~~L~~l~l~~n~l~~i-~~l~-----------------  175 (210)
T d1h6ta2         118 SLEHNGIS-D-INGLVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDI-VPLA-----------------  175 (210)
T ss_dssp             ECTTSCCC-C-CGGGGGCTTCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCCC-GGGT-----------------
T ss_pred             cccccccc-c-cccccccccccccccccccccc--ccccccccccccccccccccccc-cccc-----------------
Confidence            66555554 1 2335555555555555555532  23344455555555555544321 1222                 


Q ss_pred             cCCCCCCCCCCCCcEEEcccccccccCcccccccCCCCeeecc
Q 046712          216 SVPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEIN  258 (566)
Q Consensus       216 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~  258 (566)
                              .+++|++|++++|.+++.  ..++++++|++|+++
T Consensus       176 --------~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~Ls  208 (210)
T d1h6ta2         176 --------GLTKLQNLYLSKNHISDL--RALAGLKNLDVLELF  208 (210)
T ss_dssp             --------TCTTCCEEECCSSCCCBC--GGGTTCTTCSEEEEE
T ss_pred             --------CCCCCCEEECCCCCCCCC--hhhcCCCCCCEEEcc
Confidence                    445555555555555432  235555566665554

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.64  E-value=2.4e-15  Score=132.12  Aligned_cols=164  Identities=16%  Similarity=0.256  Sum_probs=135.9

Q ss_pred             CcEEEEEcCCCccccccCccCcCCCCCCEEecCCCcccccCCcccCCCCCCCEEeCCCCcCCCcCccccccCCCCcEEEc
Q 046712           34 QRVTGLDLRHQSVGGVLSPFVGNLNFLRSINLPNNSFRGKIPHEVGNLFRLQNLTLTNNYFLGKILTDLSHCSNLMKFEA  113 (566)
Q Consensus        34 ~~~~~l~l~~~~i~~~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l  113 (566)
                      ..+++|+++++.++...  .+..+++|++|++++|.+++ ++ .+.++++|++|++++|+++..  ..+.++++|+.|++
T Consensus        46 ~~L~~L~l~~~~i~~l~--~l~~l~~L~~L~L~~n~i~~-l~-~~~~l~~L~~L~l~~n~i~~l--~~l~~l~~L~~L~l  119 (210)
T d1h6ta2          46 NSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTD-IK-PLANLKNLGWLFLDENKVKDL--SSLKDLKKLKSLSL  119 (210)
T ss_dssp             HTCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCCCCG--GGGTTCTTCCEEEC
T ss_pred             cCccEEECcCCCCCCch--hHhhCCCCCEEeCCCccccC-cc-ccccCcccccccccccccccc--cccccccccccccc
Confidence            46889999999998653  48899999999999999984 33 478999999999999998753  35889999999999


Q ss_pred             CCCcCCCCcchhccCCCCCCEEecccccCCCCCCccccCCCCCCEEEccCCcCcccCCcccccCCcccEeecccccceec
Q 046712          114 SNNKLEGEIPVKISNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVAYNQFSGM  193 (566)
Q Consensus       114 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~  193 (566)
                      ++|.+.. + ..+..++.++.++++.+.+.+  +..+..+++|+++++++|.+.+ + ..++.+++|+.|++++|.+.+.
T Consensus       120 ~~~~~~~-~-~~l~~l~~l~~l~~~~n~l~~--~~~~~~l~~L~~l~l~~n~l~~-i-~~l~~l~~L~~L~Ls~N~i~~l  193 (210)
T d1h6ta2         120 EHNGISD-I-NGLVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISD-I-VPLAGLTKLQNLYLSKNHISDL  193 (210)
T ss_dssp             TTSCCCC-C-GGGGGCTTCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCC-C-GGGTTCTTCCEEECCSSCCCBC
T ss_pred             ccccccc-c-ccccccccccccccccccccc--cccccccccccccccccccccc-c-ccccCCCCCCEEECCCCCCCCC
Confidence            9998873 3 368889999999999999873  4467889999999999999974 3 3488999999999999988654


Q ss_pred             CCcccCcccCceEeccc
Q 046712          194 IPPIYNISSLQYIFIHT  210 (566)
Q Consensus       194 ~~~l~~~~~L~~L~l~~  210 (566)
                       +.+..+++|++|++++
T Consensus       194 -~~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         194 -RALAGLKNLDVLELFS  209 (210)
T ss_dssp             -GGGTTCTTCSEEEEEE
T ss_pred             -hhhcCCCCCCEEEccC
Confidence             4566777777777653

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=3.2e-16  Score=144.76  Aligned_cols=61  Identities=20%  Similarity=0.080  Sum_probs=26.9

Q ss_pred             ccCCCCeecccCCc-ccccccccccCCCCCCEEEccCC-cccccCCccccCCCCCCeEeccCc
Q 046712          351 NLVNLNALGVESNQ-LAGTIPLAIGELKSIQILFLNEN-FLRGTIPSSLGNLTLLTQLILEVN  411 (566)
Q Consensus       351 ~l~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~n-~~~~~~~~~~~~~~~L~~L~l~~~  411 (566)
                      ++++|++|++++|. +++.....+..+++|++|++++| .+++.....+.++++|+.|++.++
T Consensus       173 ~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         173 RCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             HCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             ccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence            34455555554432 33333334444455555555543 233333333444455555555444

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.61  E-value=1.8e-15  Score=130.95  Aligned_cols=173  Identities=19%  Similarity=0.209  Sum_probs=120.7

Q ss_pred             CCEEEccCCcccccCCccccCCCCCCeEeccCcccccc-CCCCCcCCCCCcEEEccCCcceeccchhhhhhcccceEEEc
Q 046712          379 IQILFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGK-IPPSNGNCQNLILLTTRKNKLSGIVPRQLLRIITLSVLLDL  457 (566)
Q Consensus       379 L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l  457 (566)
                      .+.++.+++.++ .+|..+.  +++++|++++|+++.. .+..|..+++|+.|++++|.+....+..+.....+ +.|++
T Consensus        10 ~~~v~Cs~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L-~~L~L   85 (192)
T d1w8aa_          10 GTTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHI-QELQL   85 (192)
T ss_dssp             TTEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTC-CEEEC
T ss_pred             CCEEEEeCCCcC-ccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeecccccccccccccccccccc-ceeee
Confidence            457888888888 6676553  6889999999998753 45667888899999998888876666655555554 77788


Q ss_pred             cCCcccccCCcCccCCCCCCEEeCccccccccCCccccCCCCCcEEeCCCCcccccCCcCCcCCCCCCEEeCCCCccccc
Q 046712          458 SDNLLSGHFPTKVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTISIPSTLSSLKSITELDLSRNNLSGH  537 (566)
Q Consensus       458 ~~~~~~~~~~~~~~~~~~L~~L~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~  537 (566)
                      ++|++....+.+|.++++|++|+|++|.+....+..|..+++|++|+|++|.+.... +...-...++.+.+..+.+...
T Consensus        86 s~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~-~~~~~~~~l~~~~l~~~~~~c~  164 (192)
T d1w8aa_          86 GENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNC-HLAWFAEWLRKKSLNGGAARCG  164 (192)
T ss_dssp             CSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSG-GGHHHHHHHHHHCCSGGGCBBC
T ss_pred             ccccccccCHHHHhCCCcccccccCCccccccCHHHhcCCccccccccccccccccc-chHHHhhhhhhhcccCCCeEeC
Confidence            888777777777777788888888888777666667777778888888777765321 1111113355556666666655


Q ss_pred             cCccccccccCceeecccCcCc
Q 046712          538 IPQYLENLSFLLFLNMSYNHFE  559 (566)
Q Consensus       538 ~~~~l~~l~~L~~L~l~~n~~~  559 (566)
                      .|..   +..++.++++.+.++
T Consensus       165 ~p~~---l~~~~l~~L~~n~l~  183 (192)
T d1w8aa_         165 APSK---VRDVQIKDLPHSEFK  183 (192)
T ss_dssp             SSTT---TTTSBGGGSCTTTCC
T ss_pred             CChh---hcCCEeeecCHhhCc
Confidence            5544   445667778777665

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.53  E-value=1.6e-15  Score=144.76  Aligned_cols=188  Identities=18%  Similarity=0.241  Sum_probs=104.5

Q ss_pred             hhhccCCCCeecccCCccccc----ccccccCCCCCCEEEccCCcccccCCcc-------------ccCCCCCCeEeccC
Q 046712          348 VIANLVNLNALGVESNQLAGT----IPLAIGELKSIQILFLNENFLRGTIPSS-------------LGNLTLLTQLILEV  410 (566)
Q Consensus       348 ~~~~l~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~n~~~~~~~~~-------------~~~~~~L~~L~l~~  410 (566)
                      .+..+++|++|++++|.+...    +...+..+++|++|++++|.+.......             ....+.|+.+++++
T Consensus        88 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~  167 (344)
T d2ca6a1          88 ALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGR  167 (344)
T ss_dssp             HHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCS
T ss_pred             HHhhCCCcccccccccccccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeeccc
Confidence            345567788888888876543    2233445677888888877764211111             12234555555555


Q ss_pred             ccccccC----CCCCcCCCCCcEEEccCCcceeccchhhhhhcccceEEEccCCccccc-----CCcCccCCCCCCEEeC
Q 046712          411 NNLQGKI----PPSNGNCQNLILLTTRKNKLSGIVPRQLLRIITLSVLLDLSDNLLSGH-----FPTKVGNLKNLVSLDI  481 (566)
Q Consensus       411 ~~l~~~~----~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~-----~~~~~~~~~~L~~L~l  481 (566)
                      |.+....    ...+..++.+                         +.+++++|.+...     ....+..+++|+.|++
T Consensus       168 n~i~~~~~~~l~~~l~~~~~L-------------------------~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~L  222 (344)
T d2ca6a1         168 NRLENGSMKEWAKTFQSHRLL-------------------------HTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDL  222 (344)
T ss_dssp             SCCTGGGHHHHHHHHHHCTTC-------------------------CEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEEC
T ss_pred             ccccccccccccchhhhhhhh-------------------------cccccccccccccccccchhhhhcchhhhccccc
Confidence            5443211    1112233444                         4555555544321     2234556677777777


Q ss_pred             cccccccc----CCccccCCCCCcEEeCCCCcccccCC----cCCcC--CCCCCEEeCCCCccccc----cCcccc-ccc
Q 046712          482 SSNMFSGE----IPTTLGGCTSLEYLGMQDNSFTISIP----STLSS--LKSITELDLSRNNLSGH----IPQYLE-NLS  546 (566)
Q Consensus       482 s~~~l~~~----~~~~~~~~~~L~~L~L~~n~~~~~~~----~~l~~--l~~L~~L~l~~n~~~~~----~~~~l~-~l~  546 (566)
                      ++|.++..    +...+..+++|++|+|++|.+++...    +++..  .+.|++|++++|.+...    +.+.+. +.+
T Consensus       223 s~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~  302 (344)
T d2ca6a1         223 QDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMP  302 (344)
T ss_dssp             CSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCT
T ss_pred             ccccccccccccccccccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCC
Confidence            77776532    23445667777777777777665322    22222  35677788887777542    233332 456


Q ss_pred             cCceeecccCcCcc
Q 046712          547 FLLFLNMSYNHFEG  560 (566)
Q Consensus       547 ~L~~L~l~~n~~~~  560 (566)
                      .|+.|++++|.+..
T Consensus       303 ~L~~L~l~~N~~~~  316 (344)
T d2ca6a1         303 DLLFLELNGNRFSE  316 (344)
T ss_dssp             TCCEEECTTSBSCT
T ss_pred             CCCEEECCCCcCCC
Confidence            77778888777654

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=1.5e-14  Score=120.47  Aligned_cols=126  Identities=16%  Similarity=0.100  Sum_probs=64.9

Q ss_pred             CcCCCCCCEEecCCCcccccCCcccCCCCCCCEEeCCCCcCCCcCccccccCCCCcEEEcCCCcCCCCcchhccCCCCCC
Q 046712           54 VGNLNFLRSINLPNNSFRGKIPHEVGNLFRLQNLTLTNNYFLGKILTDLSHCSNLMKFEASNNKLEGEIPVKISNLLMLQ  133 (566)
Q Consensus        54 ~~~l~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~  133 (566)
                      +.+...+++|++++|+|+ .++..+..+++|++|++++|.+...  ..|..+++|++|++++|+++...+..+..+++|+
T Consensus        14 ~~n~~~lr~L~L~~n~I~-~i~~~~~~l~~L~~L~Ls~N~i~~l--~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~   90 (162)
T d1a9na_          14 YTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT   90 (162)
T ss_dssp             EECTTSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred             ccCcCcCcEEECCCCCCC-ccCccccccccCCEEECCCCCCCcc--CCcccCcchhhhhcccccccCCCccccccccccc
Confidence            344455555555555555 3344445555555555555555432  2355555555555555555533333334455555


Q ss_pred             EEecccccCCCCCC--ccccCCCCCCEEEccCCcCcccCCc----ccccCCcccEee
Q 046712          134 ILNIAENHLKGQLP--ASIGNLSALQEIDVRGNRLGGRIPS----TISHVRNLISFN  184 (566)
Q Consensus       134 ~L~l~~~~~~~~~~--~~~~~l~~L~~L~l~~~~i~~~~~~----~l~~l~~L~~L~  184 (566)
                      +|++++|.+.. ++  ..+..+++|++|++++|.++ ..+.    .+..+++|+.|+
T Consensus        91 ~L~L~~N~i~~-~~~l~~l~~l~~L~~L~l~~N~i~-~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          91 ELILTNNSLVE-LGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             EEECCSCCCCC-GGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEET
T ss_pred             cceeccccccc-cccccccccccccchhhcCCCccc-cccchHHHHHHHCCCcCeeC
Confidence            55555555542 22  23455566666666666554 2222    345556666554

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.50  E-value=8.7e-15  Score=139.60  Aligned_cols=250  Identities=17%  Similarity=0.242  Sum_probs=119.4

Q ss_pred             ccccccCCCCeeecccccccccc----cccccCCCCCcEEECCCCccCCcCCCC----hhhhhhccCCCCCCEEEccCCe
Q 046712          244 DSLSNATNLQGLEINRNLFSGKV----SINFSRLQNLSRLNLGENNLGTGTTND----LDFITLLTNCTKLEVLDLHSNR  315 (566)
Q Consensus       244 ~~l~~~~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~~~~~~~~----~~~~~~l~~~~~L~~L~l~~~~  315 (566)
                      ..+.....++.|++++|.+....    ...+...++|+.++++++.........    ..+...+..+++|+.|++++|.
T Consensus        25 ~~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~  104 (344)
T d2ca6a1          25 AVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNA  104 (344)
T ss_dssp             HHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCC
T ss_pred             HHHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccccccc
Confidence            34555566666666666554322    122345566666666655433221111    1122334555666666666665


Q ss_pred             eeeecchhHhhhccCCcEEEccCCCCCCCcchhhhccCCCCeecccCCccccccc-------------ccccCCCCCCEE
Q 046712          316 FGGVLPFSLANLSTTMTEIAIGSNQISDTIPDVIANLVNLNALGVESNQLAGTIP-------------LAIGELKSIQIL  382 (566)
Q Consensus       316 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-------------~~~~~~~~L~~L  382 (566)
                      +.......+.                     ..+..+++|++|++++|.+.....             ......+.|+.+
T Consensus       105 i~~~~~~~l~---------------------~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l  163 (344)
T d2ca6a1         105 FGPTAQEPLI---------------------DFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSI  163 (344)
T ss_dssp             CCTTTHHHHH---------------------HHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEE
T ss_pred             cccccccchh---------------------hhhcccccchheecccccccccccccccccccccccccccccCccccee
Confidence            5433222211                     122233444444444443321100             011234455666


Q ss_pred             EccCCccccc----CCccccCCCCCCeEeccCcccccc-----CCCCCcCCCCCcEEEccCCcceeccchhhhhhcccce
Q 046712          383 FLNENFLRGT----IPSSLGNLTLLTQLILEVNNLQGK-----IPPSNGNCQNLILLTTRKNKLSGIVPRQLLRIITLSV  453 (566)
Q Consensus       383 ~l~~n~~~~~----~~~~~~~~~~L~~L~l~~~~l~~~-----~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~  453 (566)
                      .+++|.+...    +...+..++.|++|+++.|.+...     +...+..+++|+.|++++|.+.......+.       
T Consensus       164 ~l~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~-------  236 (344)
T d2ca6a1         164 ICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALA-------  236 (344)
T ss_dssp             ECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHH-------
T ss_pred             ecccccccccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhccccccccccccccccccc-------
Confidence            6666555421    122234455666666666655421     223455566666666666665422111111       


Q ss_pred             EEEccCCcccccCCcCccCCCCCCEEeCccccccccCCc----cccC--CCCCcEEeCCCCcccccC----CcCCc-CCC
Q 046712          454 LLDLSDNLLSGHFPTKVGNLKNLVSLDISSNMFSGEIPT----TLGG--CTSLEYLGMQDNSFTISI----PSTLS-SLK  522 (566)
Q Consensus       454 ~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~l~~~~~~----~~~~--~~~L~~L~L~~n~~~~~~----~~~l~-~l~  522 (566)
                                    ..+..+++|++|++++|.+.+....    .+..  .+.|++|++++|.++...    ...+. +++
T Consensus       237 --------------~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~  302 (344)
T d2ca6a1         237 --------------IALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMP  302 (344)
T ss_dssp             --------------HHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCT
T ss_pred             --------------ccccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCC
Confidence                          2234456666677766666533222    2222  356777777777665421    22232 456


Q ss_pred             CCCEEeCCCCccc
Q 046712          523 SITELDLSRNNLS  535 (566)
Q Consensus       523 ~L~~L~l~~n~~~  535 (566)
                      +|++|++++|.+.
T Consensus       303 ~L~~L~l~~N~~~  315 (344)
T d2ca6a1         303 DLLFLELNGNRFS  315 (344)
T ss_dssp             TCCEEECTTSBSC
T ss_pred             CCCEEECCCCcCC
Confidence            7777777777765

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=3.9e-14  Score=117.91  Aligned_cols=125  Identities=21%  Similarity=0.182  Sum_probs=105.5

Q ss_pred             CcEEEEEcCCCccccccCccCcCCCCCCEEecCCCcccccCCcccCCCCCCCEEeCCCCcCCCcCccccccCCCCcEEEc
Q 046712           34 QRVTGLDLRHQSVGGVLSPFVGNLNFLRSINLPNNSFRGKIPHEVGNLFRLQNLTLTNNYFLGKILTDLSHCSNLMKFEA  113 (566)
Q Consensus        34 ~~~~~l~l~~~~i~~~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l  113 (566)
                      .++++|+|++|+|+.. +..+..+++|++|++++|.++. ++ .+..+++|++|++++|.++...+..+..+++|++|++
T Consensus        18 ~~lr~L~L~~n~I~~i-~~~~~~l~~L~~L~Ls~N~i~~-l~-~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~L   94 (162)
T d1a9na_          18 VRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIRK-LD-GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELIL   94 (162)
T ss_dssp             TSCEEEECTTSCCCSC-CCGGGGTTCCSEEECCSSCCCE-EC-CCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEEC
T ss_pred             CcCcEEECCCCCCCcc-CccccccccCCEEECCCCCCCc-cC-CcccCcchhhhhcccccccCCCcccccccccccccee
Confidence            5789999999999976 5567889999999999999984 43 5899999999999999998777666788999999999


Q ss_pred             CCCcCCCCc-chhccCCCCCCEEecccccCCCCCCc----cccCCCCCCEEEcc
Q 046712          114 SNNKLEGEI-PVKISNLLMLQILNIAENHLKGQLPA----SIGNLSALQEIDVR  162 (566)
Q Consensus       114 ~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~----~~~~l~~L~~L~l~  162 (566)
                      ++|++.+.. ...+..+++|++|++++|.+. ..+.    .+..+++|++||-.
T Consensus        95 ~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~-~~~~~r~~~i~~lp~L~~LD~~  147 (162)
T d1a9na_          95 TNNSLVELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQ  147 (162)
T ss_dssp             CSCCCCCGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTE
T ss_pred             ccccccccccccccccccccchhhcCCCccc-cccchHHHHHHHCCCcCeeCCC
Confidence            999998432 246789999999999999987 4443    57889999999743

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.48  E-value=8.8e-14  Score=109.89  Aligned_cols=101  Identities=21%  Similarity=0.307  Sum_probs=54.1

Q ss_pred             EEEEcCCCccccccCccCcCCCCCCEEecCCCcccccCCcccCCCCCCCEEeCCCCcCCCcCccccccCCCCcEEEcCCC
Q 046712           37 TGLDLRHQSVGGVLSPFVGNLNFLRSINLPNNSFRGKIPHEVGNLFRLQNLTLTNNYFLGKILTDLSHCSNLMKFEASNN  116 (566)
Q Consensus        37 ~~l~l~~~~i~~~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~  116 (566)
                      |+|++++|+++.. + .+..+++|++|++++|.++ .+|.++..+++|++|++++|.++..  ..++.+++|++|++++|
T Consensus         1 R~L~Ls~n~l~~l-~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~l--~~~~~l~~L~~L~l~~N   75 (124)
T d1dcea3           1 RVLHLAHKDLTVL-C-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALENV--DGVANLPRLQELLLCNN   75 (124)
T ss_dssp             SEEECTTSCCSSC-C-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCC--GGGTTCSSCCEEECCSS
T ss_pred             CEEEcCCCCCCCC-c-ccccCCCCCEEECCCCccC-cchhhhhhhhccccccccccccccc--CccccccccCeEECCCC
Confidence            3566666666533 2 3566666666666666665 4455556666666666666655432  23555555555555555


Q ss_pred             cCCCCc-chhccCCCCCCEEecccccC
Q 046712          117 KLEGEI-PVKISNLLMLQILNIAENHL  142 (566)
Q Consensus       117 ~~~~~~-~~~l~~l~~L~~L~l~~~~~  142 (566)
                      ++.+.. ...+..+++|++|++++|.+
T Consensus        76 ~i~~~~~~~~l~~~~~L~~L~l~~N~i  102 (124)
T d1dcea3          76 RLQQSAAIQPLVSCPRLVLLNLQGNSL  102 (124)
T ss_dssp             CCCSSSTTGGGGGCTTCCEEECTTSGG
T ss_pred             ccCCCCCchhhcCCCCCCEEECCCCcC
Confidence            554221 12344445555555555444

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.47  E-value=1.1e-13  Score=109.43  Aligned_cols=102  Identities=26%  Similarity=0.317  Sum_probs=63.0

Q ss_pred             EEEccCCcccccCCcCccCCCCCCEEeCccccccccCCccccCCCCCcEEeCCCCcccccCCcCCcCCCCCCEEeCCCCc
Q 046712          454 LLDLSDNLLSGHFPTKVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTISIPSTLSSLKSITELDLSRNN  533 (566)
Q Consensus       454 ~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~  533 (566)
                      .|++++|+++.. + .+..+++|++|++++|.+. .+|..+..+++|++|++++|.++. + +++..+++|++|++++|+
T Consensus         2 ~L~Ls~n~l~~l-~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~-l-~~~~~l~~L~~L~l~~N~   76 (124)
T d1dcea3           2 VLHLAHKDLTVL-C-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-V-DGVANLPRLQELLLCNNR   76 (124)
T ss_dssp             EEECTTSCCSSC-C-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-C-GGGTTCSSCCEEECCSSC
T ss_pred             EEEcCCCCCCCC-c-ccccCCCCCEEECCCCccC-cchhhhhhhhcccccccccccccc-c-CccccccccCeEECCCCc
Confidence            456666666532 2 3566666777777777666 455556666677777777776663 3 346666677777777776


Q ss_pred             ccccc-CccccccccCceeecccCcCcc
Q 046712          534 LSGHI-PQYLENLSFLLFLNMSYNHFEG  560 (566)
Q Consensus       534 ~~~~~-~~~l~~l~~L~~L~l~~n~~~~  560 (566)
                      +.... ...+..+++|+.|++++|++++
T Consensus        77 i~~~~~~~~l~~~~~L~~L~l~~N~i~~  104 (124)
T d1dcea3          77 LQQSAAIQPLVSCPRLVLLNLQGNSLCQ  104 (124)
T ss_dssp             CCSSSTTGGGGGCTTCCEEECTTSGGGG
T ss_pred             cCCCCCchhhcCCCCCCEEECCCCcCCc
Confidence            66432 2456666667777777766654

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.23  E-value=2.3e-11  Score=100.14  Aligned_cols=106  Identities=20%  Similarity=0.065  Sum_probs=47.6

Q ss_pred             CCcEEEccCCcceeccchhhhhhcccceEEEccCC-cccccCCcCccCCCCCCEEeCccccccccCCccccCCCCCcEEe
Q 046712          426 NLILLTTRKNKLSGIVPRQLLRIITLSVLLDLSDN-LLSGHFPTKVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLG  504 (566)
Q Consensus       426 ~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~-~~~~~~~~~~~~~~~L~~L~ls~~~l~~~~~~~~~~~~~L~~L~  504 (566)
                      ....++..++.+. ..|..+.....+ +.|+++++ .+....+.+|..+++|+.|++++|++....+..|..+++|++|+
T Consensus         9 ~~~~l~c~~~~~~-~~p~~l~~l~~l-~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~   86 (156)
T d2ifga3           9 GSSGLRCTRDGAL-DSLHHLPGAENL-TELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLN   86 (156)
T ss_dssp             SSSCEECCSSCCC-TTTTTSCSCSCC-SEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEE
T ss_pred             CCCeEEecCCCCc-cCcccccCcccc-CeeecCCCccccccCchhhccccccCcceeeccccCCccccccccccccccee
Confidence            3344555544443 223333333332 44455433 24444444455555555555555555543344455555555555


Q ss_pred             CCCCcccccCCcCCcCCCCCCEEeCCCCcc
Q 046712          505 MQDNSFTISIPSTLSSLKSITELDLSRNNL  534 (566)
Q Consensus       505 L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~  534 (566)
                      |++|+++...+..+. ..+|+.|+|++|++
T Consensus        87 Ls~N~l~~l~~~~~~-~~~l~~L~L~~Np~  115 (156)
T d2ifga3          87 LSFNALESLSWKTVQ-GLSLQELVLSGNPL  115 (156)
T ss_dssp             CCSSCCSCCCSTTTC-SCCCCEEECCSSCC
T ss_pred             ccCCCCcccChhhhc-cccccccccCCCcc
Confidence            555555522222222 23455555555544

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.22  E-value=1.2e-13  Score=119.22  Aligned_cols=111  Identities=24%  Similarity=0.248  Sum_probs=51.0

Q ss_pred             ccccCCCCCCeEeccCccccccCCCCCcCCCCCcEEEccCCcceeccchhhhhhcccceEEEccCCcccccCCcCccCCC
Q 046712          395 SSLGNLTLLTQLILEVNNLQGKIPPSNGNCQNLILLTTRKNKLSGIVPRQLLRIITLSVLLDLSDNLLSGHFPTKVGNLK  474 (566)
Q Consensus       395 ~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~  474 (566)
                      ..+..+++|++|++++|.+.. ++ .+..+++|++|++++|.+.. ++. +....+.++.|++++|.+...  ..+..++
T Consensus        42 ~sl~~L~~L~~L~Ls~n~I~~-i~-~l~~l~~L~~L~Ls~N~i~~-i~~-~~~~~~~L~~L~l~~N~i~~l--~~~~~l~  115 (198)
T d1m9la_          42 ATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIKK-IEN-LDAVADTLEELWISYNQIASL--SGIEKLV  115 (198)
T ss_dssp             HHHHHTTTCCEEECSEEEESC-CC-CHHHHTTCCEEECCEEEECS-CSS-HHHHHHHCCEEECSEEECCCH--HHHHHHH
T ss_pred             hHHhcccccceeECcccCCCC-cc-cccCCccccChhhccccccc-ccc-ccccccccccccccccccccc--ccccccc
Confidence            344445555555555555542 22 34455555555555555442 111 111222224444444444322  1234455


Q ss_pred             CCCEEeCccccccccCC-ccccCCCCCcEEeCCCCccc
Q 046712          475 NLVSLDISSNMFSGEIP-TTLGGCTSLEYLGMQDNSFT  511 (566)
Q Consensus       475 ~L~~L~ls~~~l~~~~~-~~~~~~~~L~~L~L~~n~~~  511 (566)
                      +|+.|++++|.+.+... ..+..+++|++|++++|++.
T Consensus       116 ~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~  153 (198)
T d1m9la_         116 NLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLY  153 (198)
T ss_dssp             HSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHH
T ss_pred             cccccccccchhccccccccccCCCccceeecCCCccc
Confidence            56666666665542111 23455555555555555544

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.20  E-value=1e-13  Score=119.73  Aligned_cols=127  Identities=18%  Similarity=0.273  Sum_probs=88.3

Q ss_pred             CcEEEEEcCCC--ccccccCccCcCCCCCCEEecCCCcccccCCcccCCCCCCCEEeCCCCcCCCcCccccccCCCCcEE
Q 046712           34 QRVTGLDLRHQ--SVGGVLSPFVGNLNFLRSINLPNNSFRGKIPHEVGNLFRLQNLTLTNNYFLGKILTDLSHCSNLMKF  111 (566)
Q Consensus        34 ~~~~~l~l~~~--~i~~~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L  111 (566)
                      ...+.+++.+.  .+. .++..+..+++|++|++++|.++ .++ .+.++++|++|++++|.++.. +..+..+++|++|
T Consensus        23 ~~~~~~~l~~~~~~i~-~l~~sl~~L~~L~~L~Ls~n~I~-~i~-~l~~l~~L~~L~Ls~N~i~~i-~~~~~~~~~L~~L   98 (198)
T d1m9la_          23 TEAEKVELHGMIPPIE-KMDATLSTLKACKHLALSTNNIE-KIS-SLSGMENLRILSLGRNLIKKI-ENLDAVADTLEEL   98 (198)
T ss_dssp             TTCSCEECCBCCTTCC-CCHHHHHHTTTCCEEECSEEEES-CCC-CHHHHTTCCEEECCEEEECSC-SSHHHHHHHCCEE
T ss_pred             cccceeeeecccCchh-hhhhHHhcccccceeECcccCCC-Ccc-cccCCccccChhhcccccccc-ccccccccccccc
Confidence            33455565553  122 23456788888888888888887 343 477888888888888887643 3334456678888


Q ss_pred             EcCCCcCCCCcchhccCCCCCCEEecccccCCCCCC--ccccCCCCCCEEEccCCcCc
Q 046712          112 EASNNKLEGEIPVKISNLLMLQILNIAENHLKGQLP--ASIGNLSALQEIDVRGNRLG  167 (566)
Q Consensus       112 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~--~~~~~l~~L~~L~l~~~~i~  167 (566)
                      ++++|.++. + ..+..+++|++|++++|.+.+ ++  ..+..+++|++|++++|.+.
T Consensus        99 ~l~~N~i~~-l-~~~~~l~~L~~L~L~~N~i~~-~~~~~~l~~l~~L~~L~L~~N~l~  153 (198)
T d1m9la_          99 WISYNQIAS-L-SGIEKLVNLRVLYMSNNKITN-WGEIDKLAALDKLEDLLLAGNPLY  153 (198)
T ss_dssp             ECSEEECCC-H-HHHHHHHHSSEEEESEEECCC-HHHHHHHTTTTTCSEEEECSSHHH
T ss_pred             ccccccccc-c-ccccccccccccccccchhcc-ccccccccCCCccceeecCCCccc
Confidence            888888873 3 346777888888888888763 33  35677888888888888765

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.19  E-value=7.4e-11  Score=97.00  Aligned_cols=104  Identities=21%  Similarity=0.157  Sum_probs=52.8

Q ss_pred             CEEecCCCcccccCCcccCCCCCCCEEeCCCC-cCCCcCccccccCCCCcEEEcCCCcCCCCcchhccCCCCCCEEeccc
Q 046712           61 RSINLPNNSFRGKIPHEVGNLFRLQNLTLTNN-YFLGKILTDLSHCSNLMKFEASNNKLEGEIPVKISNLLMLQILNIAE  139 (566)
Q Consensus        61 ~~L~ls~~~l~~~~~~~~~~l~~L~~L~l~~~-~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~  139 (566)
                      +.++.+++.+. ..|..+..+++|++|++.++ .++...+.+|.++++|+.|++++|+++.+.+.+|..+++|++|++++
T Consensus        11 ~~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~   89 (156)
T d2ifga3          11 SGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF   89 (156)
T ss_dssp             SCEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred             CeEEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccC
Confidence            33444444443 33444555555555555433 24444444555555555555555555544444555555555555555


Q ss_pred             ccCCCCCCccccCCCCCCEEEccCCcC
Q 046712          140 NHLKGQLPASIGNLSALQEIDVRGNRL  166 (566)
Q Consensus       140 ~~~~~~~~~~~~~l~~L~~L~l~~~~i  166 (566)
                      |++. .++.......+|++|++++|.+
T Consensus        90 N~l~-~l~~~~~~~~~l~~L~L~~Np~  115 (156)
T d2ifga3          90 NALE-SLSWKTVQGLSLQELVLSGNPL  115 (156)
T ss_dssp             SCCS-CCCSTTTCSCCCCEEECCSSCC
T ss_pred             CCCc-ccChhhhccccccccccCCCcc
Confidence            5555 3333333333566666666655

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.25  E-value=2.2e-08  Score=82.49  Aligned_cols=81  Identities=22%  Similarity=0.256  Sum_probs=36.1

Q ss_pred             cCCCCcEEEcCCCcCCCCc--chhccCCCCCCEEecccccCCCCCCccccCCCCCCEEEccCCcCcccCCc-------cc
Q 046712          104 HCSNLMKFEASNNKLEGEI--PVKISNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPS-------TI  174 (566)
Q Consensus       104 ~l~~L~~L~l~~~~~~~~~--~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~-------~l  174 (566)
                      ++++|++|++++|+++...  +..+..+++|+.|++++|.+...-+.......+|++|++++|.+......       .+
T Consensus        63 ~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~i~  142 (162)
T d1koha1          63 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAIR  142 (162)
T ss_dssp             HCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHHHH
T ss_pred             hCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHHHHH
Confidence            3455555555555554321  22233455555555555555421111222333455555555555432221       13


Q ss_pred             ccCCcccEee
Q 046712          175 SHVRNLISFN  184 (566)
Q Consensus       175 ~~l~~L~~L~  184 (566)
                      ..+|+|+.|+
T Consensus       143 ~~~P~L~~LD  152 (162)
T d1koha1         143 ERFPKLLRLD  152 (162)
T ss_dssp             TTSTTCCEET
T ss_pred             HHCCCCCEEC
Confidence            4456666553

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.09  E-value=8.3e-08  Score=78.95  Aligned_cols=87  Identities=22%  Similarity=0.203  Sum_probs=61.4

Q ss_pred             ccCCCCCCEEeCccccccccC--CccccCCCCCcEEeCCCCcccccCCcCCcCCCCCCEEeCCCCccccccC-------c
Q 046712          470 VGNLKNLVSLDISSNMFSGEI--PTTLGGCTSLEYLGMQDNSFTISIPSTLSSLKSITELDLSRNNLSGHIP-------Q  540 (566)
Q Consensus       470 ~~~~~~L~~L~ls~~~l~~~~--~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~-------~  540 (566)
                      +..+++|++|++++|++++..  +..+..+++|+.|++++|.+.....-.+.....|+.|++++|++.....       .
T Consensus        61 ~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~  140 (162)
T d1koha1          61 EENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISA  140 (162)
T ss_dssp             HHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHH
T ss_pred             HHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHHH
Confidence            356788999999999887432  3446678899999999998885332233345678999999998875443       2


Q ss_pred             cccccccCceeecccCcC
Q 046712          541 YLENLSFLLFLNMSYNHF  558 (566)
Q Consensus       541 ~l~~l~~L~~L~l~~n~~  558 (566)
                      .+..+|+|+.||  |..+
T Consensus       141 i~~~~P~L~~LD--g~~v  156 (162)
T d1koha1         141 IRERFPKLLRLD--GHEL  156 (162)
T ss_dssp             HHTTSTTCCEET--TEEC
T ss_pred             HHHHCCCCCEEC--cCCC
Confidence            356778888776  4444

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.91  E-value=2.7e-06  Score=70.03  Aligned_cols=86  Identities=19%  Similarity=0.196  Sum_probs=43.6

Q ss_pred             cCCCCCCEEeCccccccccC----CccccCCCCCcEEeCCCCccccc----CCcCCcCCCCCCEEeCCCCcccc------
Q 046712          471 GNLKNLVSLDISSNMFSGEI----PTTLGGCTSLEYLGMQDNSFTIS----IPSTLSSLKSITELDLSRNNLSG------  536 (566)
Q Consensus       471 ~~~~~L~~L~ls~~~l~~~~----~~~~~~~~~L~~L~L~~n~~~~~----~~~~l~~l~~L~~L~l~~n~~~~------  536 (566)
                      ...++|++|+|++|.+.+..    ...+...+.|++|+|++|.++..    +.+++...++|++|++++|.+..      
T Consensus        41 ~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~~~~  120 (167)
T d1pgva_          41 CNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVE  120 (167)
T ss_dssp             TTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHH
T ss_pred             hhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCcCCCccHHHH
Confidence            34455666666666554221    12333445666666666655542    22344555666666666554331      


Q ss_pred             -ccCccccccccCceeecccC
Q 046712          537 -HIPQYLENLSFLLFLNMSYN  556 (566)
Q Consensus       537 -~~~~~l~~l~~L~~L~l~~n  556 (566)
                       .+.+.+...++|+.|+++.+
T Consensus       121 ~~l~~~L~~n~sL~~l~l~~~  141 (167)
T d1pgva_         121 MDMMMAIEENESLLRVGISFA  141 (167)
T ss_dssp             HHHHHHHHHCSSCCEEECCCC
T ss_pred             HHHHHHHHhCCCccEeeCcCC
Confidence             13344445566666666554

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.87  E-value=3.9e-06  Score=69.00  Aligned_cols=87  Identities=11%  Similarity=0.083  Sum_probs=48.6

Q ss_pred             CCCCCCEEecCCC-ccccc----CCcccCCCCCCCEEeCCCCcCCCcCcc----ccccCCCCcEEEcCCCcCCCC----c
Q 046712           56 NLNFLRSINLPNN-SFRGK----IPHEVGNLFRLQNLTLTNNYFLGKILT----DLSHCSNLMKFEASNNKLEGE----I  122 (566)
Q Consensus        56 ~l~~L~~L~ls~~-~l~~~----~~~~~~~l~~L~~L~l~~~~l~~~~~~----~~~~l~~L~~L~l~~~~~~~~----~  122 (566)
                      +.++|++|+++++ .++..    +..++...++|++|++++|.+......    .+...+.|++|++++|.+.+.    +
T Consensus        13 n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l   92 (167)
T d1pgva_          13 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL   92 (167)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred             CCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHH
Confidence            4567777777653 34432    233455666677777777766433222    234456677777777766532    2


Q ss_pred             chhccCCCCCCEEecccccC
Q 046712          123 PVKISNLLMLQILNIAENHL  142 (566)
Q Consensus       123 ~~~l~~l~~L~~L~l~~~~~  142 (566)
                      ..++...+.|++|+++++.+
T Consensus        93 ~~aL~~n~sL~~L~l~~n~~  112 (167)
T d1pgva_          93 LRSTLVTQSIVEFKADNQRQ  112 (167)
T ss_dssp             HHHTTTTCCCSEEECCCCSS
T ss_pred             HHHHHhCCcCCEEECCCCcC
Confidence            22345556666666665543

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.40  E-value=7.5e-06  Score=67.27  Aligned_cols=111  Identities=13%  Similarity=0.095  Sum_probs=59.1

Q ss_pred             CcCCCCCCEEecCC-Cccccc----CCcccCCCCCCCEEeCCCCcCCCcCcc----ccccCCCCcEEEcCCCcCCCC---
Q 046712           54 VGNLNFLRSINLPN-NSFRGK----IPHEVGNLFRLQNLTLTNNYFLGKILT----DLSHCSNLMKFEASNNKLEGE---  121 (566)
Q Consensus        54 ~~~l~~L~~L~ls~-~~l~~~----~~~~~~~l~~L~~L~l~~~~l~~~~~~----~~~~l~~L~~L~l~~~~~~~~---  121 (566)
                      ..+.+.|++|++++ +.++..    +..++...++|++|++++|.+......    .+...+.++.++++++.+.+.   
T Consensus        13 ~~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~   92 (166)
T d1io0a_          13 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL   92 (166)
T ss_dssp             HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred             HhcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHH
Confidence            34567777777776 345432    334455667777777777766543222    234566777777777665432   


Q ss_pred             -cchhccCCCCCCEEecc--cccCCC----CCCccccCCCCCCEEEccCC
Q 046712          122 -IPVKISNLLMLQILNIA--ENHLKG----QLPASIGNLSALQEIDVRGN  164 (566)
Q Consensus       122 -~~~~l~~l~~L~~L~l~--~~~~~~----~~~~~~~~l~~L~~L~l~~~  164 (566)
                       +...+...+.|+.++++  .+.+..    .+...+...++|++|++..+
T Consensus        93 ~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~  142 (166)
T d1io0a_          93 ALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT  142 (166)
T ss_dssp             HHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred             HHHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCC
Confidence             22334455666654443  333332    12333344555555555443

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.13  E-value=7.9e-05  Score=60.88  Aligned_cols=18  Identities=17%  Similarity=0.206  Sum_probs=9.0

Q ss_pred             ccCCCCCCEEEccCCeee
Q 046712          300 LTNCTKLEVLDLHSNRFG  317 (566)
Q Consensus       300 l~~~~~L~~L~l~~~~~~  317 (566)
                      +...+.|++|++++|.+.
T Consensus        42 l~~n~~L~~L~Ls~n~l~   59 (166)
T d1io0a_          42 LKTNTYVKKFSIVGTRSN   59 (166)
T ss_dssp             HTTCCSCCEEECTTSCCC
T ss_pred             HhcCCccCeeeccCCccc
Confidence            344455555555555443