Citrus Sinensis ID: 046713

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210------
Protein Sequence
MHVFTGPELKVKLARNSHYAAVRSTANGAPFRAITVRDTIGDLPAVGNGASVTTMEVGFSSPYKSEPVLWFQKKIRGDMLVLNDHISKAMSELNLIRCQKIPKQPGSDWRVLPSEKVVDLIPWCLPNTAEKHNQWKGLFGRLDWEGNFPTSVTDPHPMGMVGTCFHPNQDRIITVRECARSQGFSDSYKFVGDIQHIIGRLEMLFHLLWRLHWGEN
Secondary Structure (PSIPRED)
cccccccccEEEEccccEEccccccccccccccccHHHHHccccccccccccccccccccccccccccHHHHHHHHcccccccccccccccHHHHHHHHcccccccccccccccHHHHccccccccccccccccccccEEEccccccccEEEcccccccccccccccccccccHHHHHHHHcccccccEEEccHHHHHHHccccHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
cccccccccEEEcccccEEEEEEcccccccccEEEHHHHHccccccccccccHHccccccccccccccHHHHHHHHcccccccccccHHccHHHHHHHHHcccccccccccccccEEccccccccccccccccccccccEEEcccccccEEEEccccccccccEEccccccEEEHHHHHHHccccccEEEEccHHHHHHHHHHHHHHHHHHHcccc
Coil and Loop (DISEMBL)
mhvftgpelKVKLARNSHYAAVrstangapfraitvrdtigdlpavgngasvttmevgfsspyksepvlwFQKKIRGDMLVLNDHISKAMSELNLIRcqkipkqpgsdwrvlpsekvvdlipwclpntaekhnqwkglfgrldwegnfptsvtdphpmgmvgtcfhpnqdriITVRECarsqgfsdsykfVGDIQHIIGRLEMLFHLLWRLHWGEN
Flexible Loop (DISEMBL)
mhvftgpelKVKLARNSHYAavrstangapfraITVRDTIGDLPAVGNGASVTTMEVGFSSPYKSEPVLWFQKKIRGDMLVLNDHISKAMSELNLIRCQKIpkqpgsdwrvlPSEKVVDLIPWCLPNTAEKHNQWKGLFGRLDWEGNFPTSVTDPHPMGMVGTCFHPNQDRIITVRECARSQGFSDSYKFVGDIQHIIGRLEMLFHLLWRLHWGEN
Low Complexity Region (SEG)
MHVFTGPELKVKLARNSHYAAVRSTANGAPFRAITVRDTIGDLPAVGNGASVTTMEVGFSSPYKSEPVLWFQKKIRGDMLVLNDHISKAMSELNLIRCQKIPKQPGSDWRVLPSEKVVDLIPWCLPNTAEKHNQWKGLFGRLDWEGNFPTSVTDPHPMGMVGTCFHPNQDRIITVRECARSQGFSDSYKFVGDIQHIIGRLEMLFHLLWRLHWGEN
Disordered region (IsUnstruct)
**********VKLARNSHYAAVRSTANGAPFRAITVRDTIGDLPAVGNGASVTTMEVGFSSPYKSEPVLWFQKKIRGDMLVLNDHISKAMSELNLIRCQKIPKQPGSDWRVLPSEKVVDLIPWCLPNTAEKHNQWKGLFGRLDWEGNFPTSVTDPHPMGMVGTCFHPNQDRIITVRECARSQGFSDSYKFVGDIQHIIGRLEMLFHLLWRLHW***
Disordered Region (DISOPRED)
MHVFT**ELKVKLARNSHYAAVRSTANGAPFRAITVRDTIGDLPAVGNGASVTTMEVGFSSPYKSEPVLWFQKKIRGDMLVLNDHISKAMSELNLIRCQKIPKQPGSDWRVLPSEKVVDLIPWCLPNTAEKHNQWKGLFGRLDWEGNFPTSVTDPHPMGMVGTCFHPNQDRIITVRECARSQGFSDSYKFVGDIQHIIGRLEMLFHLLWRLHWG**
Disordered Region (DISEMBL)
MHVFTGPELKVKLARNSHYAAVRSTANGAPFRAITVRDTIGDLPAVGNGASVTTMEVGFSSPYKSEPVLWFQKKIRGDMLVLNDHISKAMSELNLIRCQKIPKQPGSDWRVLPSEKVVDLIPWCLPNTAEKHNQWKGLFGRLDWEGNFPTSVTDPHPMGMVGTCFHPNQDRIITVRECARSQGFSDSYKFVGDIQHIIGRLEMLFHLLWRLHWGEN
Disordered Region (DISPRO)
*HVFTGPELKVKLARNSHYAAVRSTANGAPFRAITVRDTIGDLPAVGNGASVTTMEVGFSSPYKSEPVLWFQKKIRGDMLVLNDHISKAMSELNLIRCQKIPKQPGSDWRVLPSEKVVDLIPWCLPNTAEKHNQWKGLFGRLDWEGNFPTSVTDPHPMGMVGTCFHPNQDRIITVRECARSQGFSDSYKFVGDIQHIIGRLEMLFHLLWRLHWGEN
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MHVFTGPELKVKLARNSHYAAVRSTANGAPFRAITVRDTIGDLPAVGNGASVTTMEVGFSSPYKSEPVLWFQKKIRGDMLVLNDHISKAMSELNLIRCQKIPKQPGSDWRVLPSEKVVDLIPWCLPNTAEKHNQWKGLFGRLDWEGNFPTSVTDPHPMGMVGTCFHPNQDRIITVRECARSQGFSDSYKFVGDIQHIIGRLEMLFHLLWRLHWGEN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	216	2.2.26 [Sep-21-2011]
B1Q3J6	1529	DNA (cytosine-5)-methyltr	yes	no	0.875	0.123	0.707	7e-83
Q7Y1I7	1527	DNA (cytosine-5)-methyltr	yes	no	0.879	0.124	0.714	6e-82
P34881	1534	DNA (cytosine-5)-methyltr	yes	no	0.879	0.123	0.655	9e-75
P13864	1620	DNA (cytosine-5)-methyltr	yes	no	0.865	0.115	0.4	2e-43
Q92072	1537	DNA (cytosine-5)-methyltr	yes	no	0.865	0.121	0.4	3e-42
Q24K09	1611	DNA (cytosine-5)-methyltr	yes	no	0.865	0.116	0.391	1e-41
P26358	1616	DNA (cytosine-5)-methyltr	yes	no	0.865	0.115	0.398	2e-41
Q27746	1612	DNA (cytosine-5)-methyltr	N/A	no	0.740	0.099	0.427	3e-41
Q9Z330	1622	DNA (cytosine-5)-methyltr	yes	no	0.856	0.114	0.336	3e-30
Q94F87	1295	DNA (cytosine-5)-methyltr	no	no	0.763	0.127	0.297	1e-13

>sp|B1Q3J6|DNM1B_ORYSJ DNA (cytosine-5)-methyltransferase 1B OS=Oryza sativa subsp. japonica GN=MET1B PE=2 SV=1

 Score =  306 bits (784), Expect = 7e-83,   Method: Compositional matrix adjust.
 Identities = 143/202 (70%), Positives = 160/202 (79%), Gaps = 13/202 (6%)

Query: 1    MHVFTGPELKVKLARNSHYAAVRSTANGAPFRAITVRDTIGDLPAVGNGASVTTMEVGFS 60
            MHVF  PELK+ L    +YAA +STA GAPFRAITVRDTIGDLP V NGAS   +E    
Sbjct: 1303 MHVFASPELKINLPDGKYYAAAKSTAGGAPFRAITVRDTIGDLPKVENGASKLLLE---- 1358

Query: 61   SPYKSEPVLWFQKKIRGDMLVLNDHISKAMSELNLIRCQKIPKQPGSDWRVLPSEKV--- 117
              Y  EP+ WFQKKIRG+ + LNDHISK M+ELNLIRCQ+IPK+PG DW  LP EKV   
Sbjct: 1359 --YGGEPISWFQKKIRGNTIALNDHISKEMNELNLIRCQRIPKRPGCDWHDLPDEKVKLS 1416

Query: 118  ----VDLIPWCLPNTAEKHNQWKGLFGRLDWEGNFPTSVTDPHPMGMVGTCFHPNQDRII 173
                VDLIPWCLPNTA++HNQWKGL+GRLDWEGNFPTSVTDP PMG VG CFHP+QDRII
Sbjct: 1417 SGQLVDLIPWCLPNTAKRHNQWKGLYGRLDWEGNFPTSVTDPQPMGKVGMCFHPDQDRII 1476

Query: 174  TVRECARSQGFSDSYKFVGDIQ 195
            TVRECARSQGF D+Y+F G+IQ
Sbjct: 1477 TVRECARSQGFPDNYQFAGNIQ 1498

Probably methylates CpG residues and maintains DNA methylation.
Oryza sativa subsp. japonica (taxid: 39947)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: 3EC: 7

>sp|Q7Y1I7|DNM1A_ORYSJ DNA (cytosine-5)-methyltransferase 1A OS=Oryza sativa subsp. japonica GN=MET1A PE=2 SV=1

 Score =  303 bits (776), Expect = 6e-82,   Method: Compositional matrix adjust.
 Identities = 145/203 (71%), Positives = 159/203 (78%), Gaps = 13/203 (6%)

Query: 1    MHVFTGPELKVKLARNSHYAAVRSTANGAPFRAITVRDTIGDLPAVGNGASVTTMEVGFS 60
            MHVF  PELK+ L     YAAV+STA GAPFR+ITVRDTIGDLPAV NGA   T++    
Sbjct: 1302 MHVFASPELKITLPDGKFYAAVKSTAAGAPFRSITVRDTIGDLPAVENGAGKPTIQ---- 1357

Query: 61   SPYKSEPVLWFQKKIRGDMLVLNDHISKAMSELNLIRCQKIPKQPGSDWRVLPSEKV--- 117
              Y S PV WFQKKIR DM  LNDHISK M+ELNLIRC+ IPK+PG DW  LP EKV   
Sbjct: 1358 --YGSGPVSWFQKKIRSDMASLNDHISKEMNELNLIRCKHIPKRPGCDWHDLPDEKVKLS 1415

Query: 118  ----VDLIPWCLPNTAEKHNQWKGLFGRLDWEGNFPTSVTDPHPMGMVGTCFHPNQDRII 173
                VDLIPWCLPNTA++HNQWKGL+GRLDWEGNFPTSVTDP PMG VG CFHP QDRII
Sbjct: 1416 TGQMVDLIPWCLPNTAKRHNQWKGLYGRLDWEGNFPTSVTDPQPMGKVGMCFHPEQDRII 1475

Query: 174  TVRECARSQGFSDSYKFVGDIQH 196
            TVRECARSQGF DSY+F G+IQ+
Sbjct: 1476 TVRECARSQGFPDSYRFAGNIQN 1498

Probably methylates CpG residues and maintains DNA methylation. May be involved in methylation-dependent gene silencing.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 7

>sp|P34881|DNMT1_ARATH DNA (cytosine-5)-methyltransferase 1 OS=Arabidopsis thaliana GN=DMT1 PE=1 SV=1

 Score =  279 bits (714), Expect = 9e-75,   Method: Compositional matrix adjust.
 Identities = 133/203 (65%), Positives = 154/203 (75%), Gaps = 13/203 (6%)

Query: 1    MHVFTGPELKVKLARNSHYAAVRSTANGAPFRAITVRDTIGDLPAVGNGASVTTMEVGFS 60
            MHVF  P+LK+ L++  HYAAVRSTA GAPFR ITVRDTIGDLP+V NG S T  E    
Sbjct: 1303 MHVFGVPKLKISLSQGLHYAAVRSTALGAPFRPITVRDTIGDLPSVENGDSRTNKE---- 1358

Query: 61   SPYKSEPVLWFQKKIRGDMLVLNDHISKAMSELNLIRCQKIPKQPGSDWRVLPSEKVV-- 118
              YK   V WFQK+IRG+ + L DHI KAM+ELNLIRC+ IP +PG+DW  LP  KV   
Sbjct: 1359 --YKEVAVSWFQKEIRGNTIALTDHICKAMNELNLIRCKLIPTRPGADWHDLPKRKVTLS 1416

Query: 119  -----DLIPWCLPNTAEKHNQWKGLFGRLDWEGNFPTSVTDPHPMGMVGTCFHPNQDRII 173
                 ++IP+CLPNTAE+HN WKGL+GRLDW+GNFPTSVTDP PMG VG CFHP Q RI+
Sbjct: 1417 DGRVEEMIPFCLPNTAERHNGWKGLYGRLDWQGNFPTSVTDPQPMGKVGMCFHPEQHRIL 1476

Query: 174  TVRECARSQGFSDSYKFVGDIQH 196
            TVRECARSQGF DSY+F G+I H
Sbjct: 1477 TVRECARSQGFPDSYEFAGNINH 1499

Maintains chromatin CpG methylation that plays a role in genomic imprinting, regulation of embryogenesis and seed viability. Required for proper patterns of CG DNA methylation in dividing cells. Required for MEA promoter methylation in seeds.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 7

>sp|P13864|DNMT1_MOUSE DNA (cytosine-5)-methyltransferase 1 OS=Mus musculus GN=Dnmt1 PE=1 SV=5

 Score =  175 bits (444), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 98/245 (40%), Positives = 128/245 (52%), Gaps = 58/245 (23%)

Query: 1    MHVFT--GPELKVKLARNSHYAAVRSTANGAPFRAITVRDTIGDLPAVGNGASVTTMEVG 58
            +HVF     +L V +      + +   ++G PFR ITVRDT+ DLP + NGAS + +   
Sbjct: 1334 LHVFAPRACQLSVVVDDKKFVSNITRLSSG-PFRTITVRDTMSDLPEIQNGASNSEI--- 1389

Query: 59   FSSPYKSEPVLWFQKKIRGDML--VLNDHISKAMSELNLIRCQKIPKQPGSDWRVLP--- 113
               PY  EP+ WFQ+++RG     +L DHI K MS L   R + IP  PGSDWR LP   
Sbjct: 1390 ---PYNGEPLSWFQRQLRGSHYQPILRDHICKDMSPLVAARMRHIPLFPGSDWRDLPNIQ 1446

Query: 114  --------------------------------------------SEKVVDLIPWCLPNTA 129
                                                        S +   LIPWCLP+T 
Sbjct: 1447 VRLGDGVIAHKLQYTFHDVKNGYSSTGALRGVCSCAEGKACDPESRQFSTLIPWCLPHTG 1506

Query: 130  EKHNQWKGLFGRLDWEGNFPTSVTDPHPMGMVGTCFHPNQDRIITVRECARSQGFSDSYK 189
             +HN W GL+GRL+W+G F T+VT+P PMG  G   HP Q R+++VRECARSQGF DSY+
Sbjct: 1507 NRHNHWAGLYGRLEWDGFFSTTVTNPEPMGKQGRVLHPEQHRVVSVRECARSQGFPDSYR 1566

Query: 190  FVGDI 194
            F G+I
Sbjct: 1567 FFGNI 1571

Methylates CpG residues. Preferentially methylates hemimethylated DNA. Associates with DNA replication sites in S phase maintaining the methylation pattern in the newly synthesized strand, that is essential for epigenetic inheritance. Associates with chromatin during G2 and M phases to maintain DNA methylation independently of replication. It is responsible for maintaining methylation patterns established in development. DNA methylation is coordinated with methylation of histones. Mediates transcriptional repression by direct binding to HDAC2. In association with DNMT3B and via the recruitment of CTCFL/BORIS, involved in activation of BAG1 gene expression by modulating dimethylation of promoter histone H3 at H3K4 and H3K9.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 7

>sp|Q92072|DNMT1_CHICK DNA (cytosine-5)-methyltransferase 1 OS=Gallus gallus GN=DNMT1 PE=1 SV=1

 Score =  171 bits (434), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 98/245 (40%), Positives = 127/245 (51%), Gaps = 58/245 (23%)

Query: 1    MHVFT--GPELKVKLARNSHYAAVRSTANGAPFRAITVRDTIGDLPAVGNGASVTTMEVG 58
            +HVF     +L V +      + +  T +G PFR ITVRDT+ DLP + NGAS   +E+ 
Sbjct: 1246 LHVFAPRACQLSVVVDDKKFVSNITRTYSG-PFRTITVRDTMSDLPEIRNGASA--LEIS 1302

Query: 59   FSSPYKSEPVLWFQKKIRGDML--VLNDHISKAMSELNLIRCQKIPKQPGSDWRVLPSEK 116
                Y  EP  WFQ++IRG     +L DHI K MS L   R + IP  PGSDWR LP+ +
Sbjct: 1303 ----YNGEPQSWFQRQIRGSQYQPILRDHICKDMSALVAARMRHIPLAPGSDWRDLPNIE 1358

Query: 117  VV-----------------------------------------------DLIPWCLPNTA 129
            V                                                 LIPWCLP+T 
Sbjct: 1359 VRLSDGTSTRKLRYTHHEKKNGRSSSGALRGVCSCAEGKPCDPADRQFNTLIPWCLPHTG 1418

Query: 130  EKHNQWKGLFGRLDWEGNFPTSVTDPHPMGMVGTCFHPNQDRIITVRECARSQGFSDSYK 189
             +HN W GL+GRL+W+G F T+VT+P PMG  G   HP Q R+++VRECARSQGF D+Y+
Sbjct: 1419 NRHNHWAGLYGRLEWDGFFSTTVTNPEPMGKQGRVLHPEQHRVVSVRECARSQGFPDTYR 1478

Query: 190  FVGDI 194
              G+I
Sbjct: 1479 LFGNI 1483

Methylates CpG residues. Preferentially methylates hemimethylated DNA. It is responsible for maintaining methylation patterns established in development (By similarity). Mediates transcriptional repression by direct binding to HDAC2.

Gallus gallus (taxid: 9031)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 7

>sp|Q24K09|DNMT1_BOVIN DNA (cytosine-5)-methyltransferase 1 OS=Bos taurus GN=DNMT1 PE=2 SV=1

 Score =  169 bits (428), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 96/245 (39%), Positives = 127/245 (51%), Gaps = 58/245 (23%)

Query: 1    MHVFT--GPELKVKLARNSHYAAVRSTANGAPFRAITVRDTIGDLPAVGNGASVTTMEVG 58
            +HVF     +L V +      + +   ++G PFR ITVRDT+ DLP + NGAS   +E+ 
Sbjct: 1328 LHVFAPRACQLSVVVDDKKFVSNITRLSSG-PFRTITVRDTMSDLPEIRNGASA--LEIS 1384

Query: 59   FSSPYKSEPVLWFQKKIRGDML--VLNDHISKAMSELNLIRCQKIPKQPGSDWRVLPSEK 116
                Y  EP  WFQ+++RG     +L DHI K MS L   R + IP  PGSDWR LP+ +
Sbjct: 1385 ----YNGEPQSWFQRQLRGSQYQPILRDHICKDMSALVAARMRHIPLAPGSDWRDLPNIE 1440

Query: 117  VV-----------------------------------------------DLIPWCLPNTA 129
            V                                                 LIPWCLP+T 
Sbjct: 1441 VRLSDGTLARKLRYNYHDKKNGCSSSGALRGVCSCVEGKPCEPAARQFNTLIPWCLPHTG 1500

Query: 130  EKHNQWKGLFGRLDWEGNFPTSVTDPHPMGMVGTCFHPNQDRIITVRECARSQGFSDSYK 189
             +HN W GL+GRL+W+G F T+VT+P PMG  G   HP Q R+++VRECARSQGF D+Y+
Sbjct: 1501 NRHNHWAGLYGRLEWDGFFSTTVTNPEPMGKQGRVLHPEQHRVVSVRECARSQGFPDTYR 1560

Query: 190  FVGDI 194
              G+I
Sbjct: 1561 LFGNI 1565

Methylates CpG residues. Preferentially methylates hemimethylated DNA. Associates with DNA replication sites in S phase maintaining the methylation pattern in the newly synthesized strand, that is essential for epigenetic inheritance. Associates with chromatin during G2 and M phases to maintain DNA methylation independently of replication. It is responsible for maintaining methylation patterns established in development. DNA methylation is coordinated with methylation of histones. Mediates transcriptional repression by direct binding to HDAC2. In association with DNMT3B and via the recruitment of CTCFL/BORIS, involved in activation of BAG1 gene expression by modulating dimethylation of promoter histone H3 at H3K4 and H3K9.

Bos taurus (taxid: 9913)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 7

>sp|P26358|DNMT1_HUMAN DNA (cytosine-5)-methyltransferase 1 OS=Homo sapiens GN=DNMT1 PE=1 SV=2

 Score =  169 bits (427), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 98/246 (39%), Positives = 127/246 (51%), Gaps = 59/246 (23%)

Query: 1    MHVFT--GPELKVKLARNSHYAAVRSTANGAPFRAITVRDTIGDLPAVGNGASVTTMEVG 58
            +HVF     +L V +      + +   ++G PFR ITVRDT+ DLP V NGAS   +E+ 
Sbjct: 1331 LHVFAPRACQLSVVVDDKKFVSNITRLSSG-PFRTITVRDTMSDLPEVRNGASA--LEIS 1387

Query: 59   FSSPYKSEPVLWFQKKIRGDML--VLNDHISKAMSELNLIRCQKIPKQPGSDWRVLP--- 113
                Y  EP  WFQ+++RG     +L DHI K MS L   R + IP  PGSDWR LP   
Sbjct: 1388 ----YNGEPQSWFQRQLRGAQYQPILRDHICKDMSALVAARMRHIPLAPGSDWRDLPNIE 1443

Query: 114  -------------------------------------SEKVVD--------LIPWCLPNT 128
                                                 + K  D        LIPWCLP+T
Sbjct: 1444 VRLSDGTMARKLRYTHHDRKNGRSSSGALRGVCSCVEAGKACDPAARQFNTLIPWCLPHT 1503

Query: 129  AEKHNQWKGLFGRLDWEGNFPTSVTDPHPMGMVGTCFHPNQDRIITVRECARSQGFSDSY 188
              +HN W GL+GRL+W+G F T+VT+P PMG  G   HP Q R+++VRECARSQGF D+Y
Sbjct: 1504 GNRHNHWAGLYGRLEWDGFFSTTVTNPEPMGKQGRVLHPEQHRVVSVRECARSQGFPDTY 1563

Query: 189  KFVGDI 194
            +  G+I
Sbjct: 1564 RLFGNI 1569

Methylates CpG residues. Preferentially methylates hemimethylated DNA. Associates with DNA replication sites in S phase maintaining the methylation pattern in the newly synthesized strand, that is essential for epigenetic inheritance. Associates with chromatin during G2 and M phases to maintain DNA methylation independently of replication. It is responsible for maintaining methylation patterns established in development. DNA methylation is coordinated with methylation of histones. Mediates transcriptional repression by direct binding to HDAC2. In association with DNMT3B and via the recruitment of CTCFL/BORIS, involved in activation of BAG1 gene expression by modulating dimethylation of promoter histone H3 at H3K4 and H3K9.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 7

>sp|Q27746|DNMT1_PARLI DNA (cytosine-5)-methyltransferase PliMCI OS=Paracentrotus lividus GN=DNMT PE=2 SV=1

 Score =  168 bits (425), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 92/215 (42%), Positives = 113/215 (52%), Gaps = 55/215 (25%)

Query: 29   APFRAITVRDTIGDLPAVGNGASVTTMEVGFSSPYKSEPVLWFQKKIRGDML--VLNDHI 86
            AP+R ITVRDT+ DLP + NGA    +E+     Y  EP   FQKKIRG+    +L DHI
Sbjct: 1352 APYRTITVRDTMSDLPTINNGAQ--KLEIS----YDGEPQSDFQKKIRGNQYQPILRDHI 1405

Query: 87   SKAMSELNLIRCQKIPKQPGSDWRVLPSEKVV---------------------------- 118
             K MS L   R + IP  PGSDWR LP+  V                             
Sbjct: 1406 CKDMSSLVAARMKHIPLAPGSDWRDLPNIPVTLKDGTTCRKLRYTHKDKKNGKSSTGALR 1465

Query: 119  -------------------DLIPWCLPNTAEKHNQWKGLFGRLDWEGNFPTSVTDPHPMG 159
                                LIPWCLP+T  +HN W GL+GRL+W+G F T+VT+P PMG
Sbjct: 1466 GVCSCAEGDACDPSDRQFSTLIPWCLPHTGNRHNNWAGLYGRLEWDGFFSTTVTNPEPMG 1525

Query: 160  MVGTCFHPNQDRIITVRECARSQGFSDSYKFVGDI 194
              G   HP Q R+++VRECARSQGF D+Y+F G I
Sbjct: 1526 KQGRVLHPEQHRVVSVRECARSQGFPDTYRFFGSI 1560

Methylates CpG residues.

Paracentrotus lividus (taxid: 7656)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 7

>sp|Q9Z330|DNMT1_RAT DNA (cytosine-5)-methyltransferase 1 OS=Rattus norvegicus GN=Dnmt1 PE=1 SV=2

 Score =  131 bits (330), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 83/247 (33%), Positives = 116/247 (46%), Gaps = 62/247 (25%)

Query: 1    MHVFT--GPELKVKLARNSHYAAVRSTANGAPFRAITVRDTIGDLPAVGNGASVTTMEVG 58
            +HVF     +L V +      + +   ++G PFR IT+RDT+ DLP + NGAS   +   
Sbjct: 1336 LHVFAPRACQLSVVVDDKKFVSNITRLSSG-PFRTITMRDTMSDLPEIQNGASAPEISYK 1394

Query: 59   FSSPYKSEPVLWFQKKIRGDMLVLNDHISKAMSELNL----IRCQKIPKQPGSDWRVLP- 113
            + +      VL  +   R   + L  H      +++      R + IP  PGSDWR LP 
Sbjct: 1395 WRAT-----VLVPEAAAR---VALPAHPQGPYPQVHERAGGCRMRHIPLSPGSDWRDLPN 1446

Query: 114  ----------------------------------------------SEKVVDLIPWCLPN 127
                                                          S +   LIPWCLP+
Sbjct: 1447 IQVRLRDGVITNKLRYTFHDTKNGCSSTGALRGVCSCAEGKTCDPASRQFNTLIPWCLPH 1506

Query: 128  TAEKHNQWKGLFGRLDWEGNFPTSVTDPHPMGMVGTCFHPNQDRIITVRECARSQGFSDS 187
            T  +HN W GL+GRL+W+G F T+VT+P PMG  G   HP Q R+++VRECARSQGF D+
Sbjct: 1507 TGNRHNHWAGLYGRLEWDGFFSTTVTNPEPMGKQGRVLHPEQHRVVSVRECARSQGFPDT 1566

Query: 188  YKFVGDI 194
            Y+  G+I
Sbjct: 1567 YRLFGNI 1573

Methylates CpG residues. Preferentially methylates hemimethylated DNA. Associates with DNA replication sites in S phase maintaining the methylation pattern in the newly synthesized strand, that is essential for epigenetic inheritance. Associates with chromatin during G2 and M phases to maintain DNA methylation independently of replication. It is responsible for maintaining methylation patterns established in development. DNA methylation is coordinated with methylation of histones. Mediates transcriptional repression by direct binding to HDAC2. In association with DNMT3B and via the recruitment of CTCFL/BORIS, involved in activation of BAG1 gene expression by modulating dimethylation of promoter histone H3 at H3K4 and H3K9.

Rattus norvegicus (taxid: 10116)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 7

>sp|Q94F87|CMT2_ARATH DNA (cytosine-5)-methyltransferase CMT2 OS=Arabidopsis thaliana GN=CMT2 PE=2 SV=3

 Score = 77.0 bits (188), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 63/212 (29%), Positives = 97/212 (45%), Gaps = 47/212 (22%)

Query: 22   VRSTANGAPFR---AITVRDTIGDLPAVGNGASVTTMEVGFSSPYKSEPVLWFQKKIRGD 78
            V + A G P +   A+ ++D I DLP V N      +      PY+S P   FQ+ IR  
Sbjct: 1039 VVAYAEGQPRKLEKALVLKDAISDLPHVSNDEDREKL------PYESLPKTDFQRYIRST 1092

Query: 79   ---------------MLVLNDHISKAMSELNLIRCQKIPKQPGSDWRVLPSEKVVD---- 119
                            ++L+DH    ++E +  R  +IPK+ G+++R LP   V +    
Sbjct: 1093 KRDLTGSAIDNCNKRTMLLHDHRPFHINEDDYARVCQIPKRKGANFRDLPGLIVRNNTVC 1152

Query: 120  ----LIPWCLPNTAE---------KHNQWKGLFGRLDWEGNFPTSVTDP--HPMGMVGTC 164
                + P  LP+            +  + K  F RL W+   PT +T P  H   ++   
Sbjct: 1153 RDPSMEPVILPSGKPLVPGYVFTFQQGKSKRPFARLWWDETVPTVLTVPTCHSQALL--- 1209

Query: 165  FHPNQDRIITVRECARSQGFSDSYKFVGDIQH 196
             HP QDR++T+RE AR QGF D ++F G I+ 
Sbjct: 1210 -HPEQDRVLTIRESARLQGFPDYFQFCGTIKE 1240

May be involved in the CpXpG methylation and in gene silencing.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 7

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	216
255553977	1542	DNA (cytosine-5)-methyltransferase, puta	0.879	0.123	0.768	1e-90
255573870	1584	DNA (cytosine-5)-methyltransferase, puta	0.879	0.119	0.768	4e-90
449462818	1523	PREDICTED: DNA (cytosine-5)-methyltransf	0.879	0.124	0.763	1e-87
449494652	544	PREDICTED: DNA (cytosine-5)-methyltransf	0.879	0.349	0.763	3e-87
359480931	1530	PREDICTED: DNA (cytosine-5)-methyltransf	0.879	0.124	0.748	3e-87
296084835	1417	unnamed protein product [Vitis vinifera]	0.879	0.134	0.748	5e-87
296084836	1429	unnamed protein product [Vitis vinifera]	0.879	0.132	0.738	3e-86
225463167	1549	PREDICTED: DNA (cytosine-5)-methyltransf	0.879	0.122	0.738	3e-86
357498929	1573	DNA (cytosine-5)-methyltransferase [Medi	0.879	0.120	0.733	5e-86
261414304	1569	DNA methyltransferase [Hieracium pilosel	0.879	0.121	0.743	8e-86

>gi|255553977|ref|XP_002518029.1| DNA (cytosine-5)-methyltransferase, putative [Ricinus communis] gi|223543011|gb|EEF44547.1| DNA (cytosine-5)-methyltransferase, putative [Ricinus communis]

 Score =  338 bits (866), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 156/203 (76%), Positives = 172/203 (84%), Gaps = 13/203 (6%)

Query: 1    MHVFTGPELKVKLARNSHYAAVRSTANGAPFRAITVRDTIGDLPAVGNGASVTTMEVGFS 60
            MHVF+ PELK+ L+ NSHYAAVRSTANGAPFRAITVRDTIGDLP VGNGAS T ME    
Sbjct: 1316 MHVFSAPELKISLSGNSHYAAVRSTANGAPFRAITVRDTIGDLPVVGNGASATNME---- 1371

Query: 61   SPYKSEPVLWFQKKIRGDMLVLNDHISKAMSELNLIRCQKIPKQPGSDWRVLPSEKV--- 117
              YK++PV WFQK+IRG+M+ L DHISK M+ELNLIRCQKIPK+PG+DWR LP EKV   
Sbjct: 1372 --YKNDPVSWFQKRIRGNMVTLTDHISKEMNELNLIRCQKIPKRPGADWRDLPDEKVKLS 1429

Query: 118  ----VDLIPWCLPNTAEKHNQWKGLFGRLDWEGNFPTSVTDPHPMGMVGTCFHPNQDRII 173
                VDLIPWCLPNTA++HNQWKGLFGRLDWEGNFPTS+TDP PMG VG CFHP QDRI+
Sbjct: 1430 TGQLVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSITDPQPMGKVGMCFHPEQDRIL 1489

Query: 174  TVRECARSQGFSDSYKFVGDIQH 196
            TVRECARSQGF DSYKF G+IQH
Sbjct: 1490 TVRECARSQGFRDSYKFAGNIQH 1512

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255573870|ref|XP_002527854.1| DNA (cytosine-5)-methyltransferase, putative [Ricinus communis] gi|223532778|gb|EEF34557.1| DNA (cytosine-5)-methyltransferase, putative [Ricinus communis]

 Score =  336 bits (861), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 156/203 (76%), Positives = 174/203 (85%), Gaps = 13/203 (6%)

Query: 1    MHVFTGPELKVKLARNSHYAAVRSTANGAPFRAITVRDTIGDLPAVGNGASVTTMEVGFS 60
            MHVF GPELK+KL+ NS YAAVRSTANGAPFRAITVRDTIGDLPAVGNGAS+TTM+    
Sbjct: 1334 MHVFAGPELKIKLSGNSQYAAVRSTANGAPFRAITVRDTIGDLPAVGNGASLTTMQ---- 1389

Query: 61   SPYKSEPVLWFQKKIRGDMLVLNDHISKAMSELNLIRCQKIPKQPGSDWRVLPSEKV--- 117
              YK+EPV WFQK IRGD LVL DHISK M+ELNLIRC++IPK PG+DWR LP +KV   
Sbjct: 1390 --YKNEPVSWFQKTIRGDALVLTDHISKEMNELNLIRCKRIPKHPGADWRDLPDKKVKLS 1447

Query: 118  ----VDLIPWCLPNTAEKHNQWKGLFGRLDWEGNFPTSVTDPHPMGMVGTCFHPNQDRII 173
                VDL+PWCLPNTA++HNQWKGLFGRLDWEGNFPTSVTDP PMG VG CFHP QDRI+
Sbjct: 1448 NGQLVDLVPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSVTDPQPMGKVGMCFHPEQDRIL 1507

Query: 174  TVRECARSQGFSDSYKFVGDIQH 196
            TVRECARSQGF+DSY+F+G+IQ 
Sbjct: 1508 TVRECARSQGFADSYQFLGNIQQ 1530

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449462818|ref|XP_004149137.1| PREDICTED: DNA (cytosine-5)-methyltransferase 1B-like [Cucumis sativus]

 Score =  328 bits (841), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 155/203 (76%), Positives = 169/203 (83%), Gaps = 13/203 (6%)

Query: 1    MHVFTGPELKVKLARNSHYAAVRSTANGAPFRAITVRDTIGDLPAVGNGASVTTMEVGFS 60
            MHVF  PELK+ L+ N+ YAAV STA GAPFR ITVRDTIGDLPAVGNGASV TME    
Sbjct: 1292 MHVFGSPELKISLSDNTRYAAVPSTAGGAPFRPITVRDTIGDLPAVGNGASVITME---- 1347

Query: 61   SPYKSEPVLWFQKKIRGDMLVLNDHISKAMSELNLIRCQKIPKQPGSDWRVLPSEKVV-- 118
              YKSEP  WFQKKIRGD+LVLNDHISK M+ELNLIRCQ+IPK+PG+DWR LP EKV   
Sbjct: 1348 --YKSEPASWFQKKIRGDVLVLNDHISKEMNELNLIRCQRIPKRPGADWRDLPDEKVRLS 1405

Query: 119  -----DLIPWCLPNTAEKHNQWKGLFGRLDWEGNFPTSVTDPHPMGMVGTCFHPNQDRII 173
                 DLIPWCLPNTA++HNQWKGLFGRL+WEGNFPTS+TDP PMG VG CFHP QDRI+
Sbjct: 1406 NGQMHDLIPWCLPNTAKRHNQWKGLFGRLEWEGNFPTSITDPQPMGKVGMCFHPEQDRIL 1465

Query: 174  TVRECARSQGFSDSYKFVGDIQH 196
            TVRECARSQGF DSYKF G+IQH
Sbjct: 1466 TVRECARSQGFPDSYKFAGNIQH 1488

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449494652|ref|XP_004159609.1| PREDICTED: DNA (cytosine-5)-methyltransferase 1B-like [Cucumis sativus]

 Score =  327 bits (837), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 155/203 (76%), Positives = 169/203 (83%), Gaps = 13/203 (6%)

Query: 1   MHVFTGPELKVKLARNSHYAAVRSTANGAPFRAITVRDTIGDLPAVGNGASVTTMEVGFS 60
           MHVF  PELK+ L+ N+ YAAV STA GAPFR ITVRDTIGDLPAVGNGASV TME    
Sbjct: 313 MHVFGSPELKISLSDNTRYAAVPSTAGGAPFRPITVRDTIGDLPAVGNGASVITME---- 368

Query: 61  SPYKSEPVLWFQKKIRGDMLVLNDHISKAMSELNLIRCQKIPKQPGSDWRVLPSEKVV-- 118
             YKSEP  WFQKKIRGD+LVLNDHISK M+ELNLIRCQ+IPK+PG+DWR LP EKV   
Sbjct: 369 --YKSEPASWFQKKIRGDVLVLNDHISKEMNELNLIRCQRIPKRPGADWRDLPDEKVRLS 426

Query: 119 -----DLIPWCLPNTAEKHNQWKGLFGRLDWEGNFPTSVTDPHPMGMVGTCFHPNQDRII 173
                DLIPWCLPNTA++HNQWKGLFGRL+WEGNFPTS+TDP PMG VG CFHP QDRI+
Sbjct: 427 NGQMHDLIPWCLPNTAKRHNQWKGLFGRLEWEGNFPTSITDPQPMGKVGMCFHPEQDRIL 486

Query: 174 TVRECARSQGFSDSYKFVGDIQH 196
           TVRECARSQGF DSYKF G+IQH
Sbjct: 487 TVRECARSQGFPDSYKFAGNIQH 509

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359480931|ref|XP_002267284.2| PREDICTED: DNA (cytosine-5)-methyltransferase 1B-like [Vitis vinifera]

 Score =  327 bits (837), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 152/203 (74%), Positives = 170/203 (83%), Gaps = 13/203 (6%)

Query: 1    MHVFTGPELKVKLARNSHYAAVRSTANGAPFRAITVRDTIGDLPAVGNGASVTTMEVGFS 60
            MHVF  PELK+ L++N  YAAVRSTA GAPFRAITVRDTIGDLPAV NGAS T +E    
Sbjct: 1307 MHVFAVPELKITLSKNMQYAAVRSTATGAPFRAITVRDTIGDLPAVTNGASKTGLE---- 1362

Query: 61   SPYKSEPVLWFQKKIRGDMLVLNDHISKAMSELNLIRCQKIPKQPGSDWRVLPSEKV--- 117
              Y++ PV WFQKKIRG+M+VL DHISK M+ELNLIRCQKIPKQPG+DWR LP EKV   
Sbjct: 1363 --YQNGPVSWFQKKIRGNMMVLTDHISKEMNELNLIRCQKIPKQPGADWRSLPDEKVALS 1420

Query: 118  ----VDLIPWCLPNTAEKHNQWKGLFGRLDWEGNFPTSVTDPHPMGMVGTCFHPNQDRII 173
                VDLIPWCLPNTA++HNQWKGLFGRLDWEGNFPTS+TDP PMG VG CFHP+QDR++
Sbjct: 1421 TGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSITDPQPMGKVGMCFHPDQDRLV 1480

Query: 174  TVRECARSQGFSDSYKFVGDIQH 196
            +VRECARSQGF DSYKF G+IQH
Sbjct: 1481 SVRECARSQGFPDSYKFSGNIQH 1503

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296084835|emb|CBI27717.3| unnamed protein product [Vitis vinifera]

 Score =  326 bits (835), Expect = 5e-87,   Method: Compositional matrix adjust.
 Identities = 152/203 (74%), Positives = 170/203 (83%), Gaps = 13/203 (6%)

Query: 1    MHVFTGPELKVKLARNSHYAAVRSTANGAPFRAITVRDTIGDLPAVGNGASVTTMEVGFS 60
            MHVF  PELK+ L++N  YAAVRSTA GAPFRAITVRDTIGDLPAV NGAS T +E    
Sbjct: 1194 MHVFAVPELKITLSKNMQYAAVRSTATGAPFRAITVRDTIGDLPAVTNGASKTGLE---- 1249

Query: 61   SPYKSEPVLWFQKKIRGDMLVLNDHISKAMSELNLIRCQKIPKQPGSDWRVLPSEKV--- 117
              Y++ PV WFQKKIRG+M+VL DHISK M+ELNLIRCQKIPKQPG+DWR LP EKV   
Sbjct: 1250 --YQNGPVSWFQKKIRGNMMVLTDHISKEMNELNLIRCQKIPKQPGADWRSLPDEKVALS 1307

Query: 118  ----VDLIPWCLPNTAEKHNQWKGLFGRLDWEGNFPTSVTDPHPMGMVGTCFHPNQDRII 173
                VDLIPWCLPNTA++HNQWKGLFGRLDWEGNFPTS+TDP PMG VG CFHP+QDR++
Sbjct: 1308 TGQVVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSITDPQPMGKVGMCFHPDQDRLV 1367

Query: 174  TVRECARSQGFSDSYKFVGDIQH 196
            +VRECARSQGF DSYKF G+IQH
Sbjct: 1368 SVRECARSQGFPDSYKFSGNIQH 1390

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296084836|emb|CBI27718.3| unnamed protein product [Vitis vinifera]

 Score =  323 bits (828), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 150/203 (73%), Positives = 168/203 (82%), Gaps = 13/203 (6%)

Query: 1    MHVFTGPELKVKLARNSHYAAVRSTANGAPFRAITVRDTIGDLPAVGNGASVTTMEVGFS 60
            MHVF  PELK+ L+ N  YAAVRSTA GAPFRAITVRDTIGDLP V NGAS+T +E    
Sbjct: 1201 MHVFAVPELKITLSENMQYAAVRSTATGAPFRAITVRDTIGDLPDVKNGASITNLE---- 1256

Query: 61   SPYKSEPVLWFQKKIRGDMLVLNDHISKAMSELNLIRCQKIPKQPGSDWRVLPSEKV--- 117
              Y+++PV WFQKKIRG+M+VL DHISK M+ELNLIRCQKIPKQPG+DW  LP EKV   
Sbjct: 1257 --YQNDPVSWFQKKIRGNMVVLMDHISKEMNELNLIRCQKIPKQPGADWHSLPDEKVKLS 1314

Query: 118  ----VDLIPWCLPNTAEKHNQWKGLFGRLDWEGNFPTSVTDPHPMGMVGTCFHPNQDRII 173
                VDLIPWCLPNTA++HNQWKGLFGRLDWEGNFPTS+TDP PMG VG CFHP QDRI+
Sbjct: 1315 TGQLVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSITDPQPMGKVGMCFHPEQDRIL 1374

Query: 174  TVRECARSQGFSDSYKFVGDIQH 196
            +VRECARSQGF DSY+F G+IQH
Sbjct: 1375 SVRECARSQGFRDSYQFAGNIQH 1397

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225463167|ref|XP_002267200.1| PREDICTED: DNA (cytosine-5)-methyltransferase 1B-like [Vitis vinifera]

 Score =  323 bits (828), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 150/203 (73%), Positives = 168/203 (82%), Gaps = 13/203 (6%)

Query: 1    MHVFTGPELKVKLARNSHYAAVRSTANGAPFRAITVRDTIGDLPAVGNGASVTTMEVGFS 60
            MHVF  PELK+ L+ N  YAAVRSTA GAPFRAITVRDTIGDLP V NGAS+T +E    
Sbjct: 1321 MHVFAVPELKITLSENMQYAAVRSTATGAPFRAITVRDTIGDLPDVKNGASITNLE---- 1376

Query: 61   SPYKSEPVLWFQKKIRGDMLVLNDHISKAMSELNLIRCQKIPKQPGSDWRVLPSEKV--- 117
              Y+++PV WFQKKIRG+M+VL DHISK M+ELNLIRCQKIPKQPG+DW  LP EKV   
Sbjct: 1377 --YQNDPVSWFQKKIRGNMVVLMDHISKEMNELNLIRCQKIPKQPGADWHSLPDEKVKLS 1434

Query: 118  ----VDLIPWCLPNTAEKHNQWKGLFGRLDWEGNFPTSVTDPHPMGMVGTCFHPNQDRII 173
                VDLIPWCLPNTA++HNQWKGLFGRLDWEGNFPTS+TDP PMG VG CFHP QDRI+
Sbjct: 1435 TGQLVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSITDPQPMGKVGMCFHPEQDRIL 1494

Query: 174  TVRECARSQGFSDSYKFVGDIQH 196
            +VRECARSQGF DSY+F G+IQH
Sbjct: 1495 SVRECARSQGFRDSYQFAGNIQH 1517

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357498929|ref|XP_003619753.1| DNA (cytosine-5)-methyltransferase [Medicago truncatula] gi|355494768|gb|AES75971.1| DNA (cytosine-5)-methyltransferase [Medicago truncatula]

 Score =  322 bits (826), Expect = 5e-86,   Method: Compositional matrix adjust.
 Identities = 149/203 (73%), Positives = 167/203 (82%), Gaps = 13/203 (6%)

Query: 1    MHVFTGPELKVKLARNSHYAAVRSTANGAPFRAITVRDTIGDLPAVGNGASVTTMEVGFS 60
            MHVF+ PELK+ L+ N  YAAVRSTANGAP RAITVRDTIG+LP VGNGAS T ME    
Sbjct: 1346 MHVFSAPELKITLSENVQYAAVRSTANGAPLRAITVRDTIGELPVVGNGASRTNME---- 1401

Query: 61   SPYKSEPVLWFQKKIRGDMLVLNDHISKAMSELNLIRCQKIPKQPGSDWRVLPSEKV--- 117
              Y+S+PV WFQKKIRG+M VL DHISK M+ELNLIRCQKIPK+PG DWR LP EK+   
Sbjct: 1402 --YQSDPVSWFQKKIRGNMAVLTDHISKEMNELNLIRCQKIPKRPGCDWRDLPEEKIKLS 1459

Query: 118  ----VDLIPWCLPNTAEKHNQWKGLFGRLDWEGNFPTSVTDPHPMGMVGTCFHPNQDRII 173
                VDLIPWCLPNTA++HNQWKGLFGRLDW+GNFPTS+TDP PMG VG CFHP+QDRI+
Sbjct: 1460 SGQLVDLIPWCLPNTAKRHNQWKGLFGRLDWQGNFPTSITDPQPMGKVGMCFHPDQDRIL 1519

Query: 174  TVRECARSQGFSDSYKFVGDIQH 196
            TVRECARSQGF D Y+F G+I H
Sbjct: 1520 TVRECARSQGFPDRYQFYGNIIH 1542

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|261414304|gb|ACX83570.1| DNA methyltransferase [Hieracium pilosella]

 Score =  322 bits (824), Expect = 8e-86,   Method: Compositional matrix adjust.
 Identities = 151/203 (74%), Positives = 167/203 (82%), Gaps = 13/203 (6%)

Query: 1    MHVFTGPELKVKLARNSHYAAVRSTANGAPFRAITVRDTIGDLPAVGNGASVTTMEVGFS 60
            MHVF  PEL+V L  NS YAA RSTA+GAPFRAITVRDTIGDLP VGNGAS  T+E    
Sbjct: 1338 MHVFASPELRVSLNGNSQYAAARSTASGAPFRAITVRDTIGDLPPVGNGASNPTIE---- 1393

Query: 61   SPYKSEPVLWFQKKIRGDMLVLNDHISKAMSELNLIRCQKIPKQPGSDWRVLPSEKV--- 117
              YK+EPV WFQK+IRGD  VL DHISK M+ELN+IRCQ+IPK+PG+DWR LP EKV   
Sbjct: 1394 --YKNEPVSWFQKRIRGDASVLTDHISKEMNELNVIRCQRIPKRPGADWRDLPEEKVKLS 1451

Query: 118  ----VDLIPWCLPNTAEKHNQWKGLFGRLDWEGNFPTSVTDPHPMGMVGTCFHPNQDRII 173
                VDLIPWCLPNTA++HNQWKGLFGRLDWEGNFPTS+TDP PMG VG CFHP+QDRI+
Sbjct: 1452 TGQMVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSITDPQPMGKVGMCFHPDQDRIL 1511

Query: 174  TVRECARSQGFSDSYKFVGDIQH 196
            TVRECARSQGF D YKF G+IQH
Sbjct: 1512 TVRECARSQGFPDGYKFSGNIQH 1534

Source: Hieracium pilosella

Species: Hieracium pilosella

Genus: Hieracium

Family: Asteraceae

Order: Asterales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	216
UNIPROTKB|Q7Y1I7	1527	MET1A "DNA (cytosine-5)-methyl	0.879	0.124	0.714	8.6e-74
TAIR|locus:2155959	1534	MET1 "methyltransferase 1" [Ar	0.879	0.123	0.655	1.8e-67
TAIR|locus:2122313	1512	AT4G08990 [Arabidopsis thalian	0.879	0.125	0.620	1.1e-62
TAIR|locus:2140892	1404	MEE57 "maternal effect embryo	0.819	0.126	0.554	7e-51
UNIPROTKB|K7ENW7	389	DNMT1 "DNA (cytosine-5)-methyl	0.347	0.192	0.6	3.3e-45
MGI|MGI:94912	1620	Dnmt1 "DNA methyltransferase (	0.375	0.05	0.592	1.4e-43
ZFIN|ZDB-GENE-990714-15	1500	dnmt1 "DNA (cytosine-5-)-methy	0.379	0.054	0.554	3.9e-43
UNIPROTKB|Q92072	1537	DNMT1 "DNA (cytosine-5)-methyl	0.379	0.053	0.554	6.8e-43
UNIPROTKB|Q24K09	1611	DNMT1 "DNA (cytosine-5)-methyl	0.347	0.046	0.6	3.3e-42
UNIPROTKB|P26358	1616	DNMT1 "DNA (cytosine-5)-methyl	0.347	0.046	0.6	4.2e-42

UNIPROTKB|Q7Y1I7 MET1A "DNA (cytosine-5)-methyltransferase 1A" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 756 (271.2 bits), Expect = 8.6e-74, P = 8.6e-74
 Identities = 145/203 (71%), Positives = 159/203 (78%)

Query:     1 MHVFTGPELKVKLARNSHYAAVRSTANGAPFRAITVRDTIGDLPAVGNGASVTTMEVGFS 60
             MHVF  PELK+ L     YAAV+STA GAPFR+ITVRDTIGDLPAV NGA   T++ G  
Sbjct:  1302 MHVFASPELKITLPDGKFYAAVKSTAAGAPFRSITVRDTIGDLPAVENGAGKPTIQYG-- 1359

Query:    61 SPYKSEPVLWFQKKIRGDMLVLNDHISKAMSELNLIRCQKIPKQPGSDWRVLPSEKV--- 117
                 S PV WFQKKIR DM  LNDHISK M+ELNLIRC+ IPK+PG DW  LP EKV   
Sbjct:  1360 ----SGPVSWFQKKIRSDMASLNDHISKEMNELNLIRCKHIPKRPGCDWHDLPDEKVKLS 1415

Query:   118 ----VDLIPWCLPNTAEKHNQWKGLFGRLDWEGNFPTSVTDPHPMGMVGTCFHPNQDRII 173
                 VDLIPWCLPNTA++HNQWKGL+GRLDWEGNFPTSVTDP PMG VG CFHP QDRII
Sbjct:  1416 TGQMVDLIPWCLPNTAKRHNQWKGLYGRLDWEGNFPTSVTDPQPMGKVGMCFHPEQDRII 1475

Query:   174 TVRECARSQGFSDSYKFVGDIQH 196
             TVRECARSQGF DSY+F G+IQ+
Sbjct:  1476 TVRECARSQGFPDSYRFAGNIQN 1498

GO:0010216 "maintenance of DNA methylation" evidence=ISS

GO:0010424 "DNA methylation on cytosine within a CG sequence" evidence=ISS

GO:0016458 "gene silencing" evidence=IMP

TAIR|locus:2155959 MET1 "methyltransferase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 697 (250.4 bits), Expect = 1.8e-67, P = 1.8e-67
 Identities = 133/203 (65%), Positives = 154/203 (75%)

Query:     1 MHVFTGPELKVKLARNSHYAAVRSTANGAPFRAITVRDTIGDLPAVGNGASVTTMEVGFS 60
             MHVF  P+LK+ L++  HYAAVRSTA GAPFR ITVRDTIGDLP+V NG S T  E    
Sbjct:  1303 MHVFGVPKLKISLSQGLHYAAVRSTALGAPFRPITVRDTIGDLPSVENGDSRTNKE---- 1358

Query:    61 SPYKSEPVLWFQKKIRGDMLVLNDHISKAMSELNLIRCQKIPKQPGSDWRVLPSEKVV-- 118
               YK   V WFQK+IRG+ + L DHI KAM+ELNLIRC+ IP +PG+DW  LP  KV   
Sbjct:  1359 --YKEVAVSWFQKEIRGNTIALTDHICKAMNELNLIRCKLIPTRPGADWHDLPKRKVTLS 1416

Query:   119 -----DLIPWCLPNTAEKHNQWKGLFGRLDWEGNFPTSVTDPHPMGMVGTCFHPNQDRII 173
                  ++IP+CLPNTAE+HN WKGL+GRLDW+GNFPTSVTDP PMG VG CFHP Q RI+
Sbjct:  1417 DGRVEEMIPFCLPNTAERHNGWKGLYGRLDWQGNFPTSVTDPQPMGKVGMCFHPEQHRIL 1476

Query:   174 TVRECARSQGFSDSYKFVGDIQH 196
             TVRECARSQGF DSY+F G+I H
Sbjct:  1477 TVRECARSQGFPDSYEFAGNINH 1499

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006306 "DNA methylation" evidence=IEA;RCA

GO:0090116 "C-5 methylation of cytosine" evidence=IEA

GO:0010069 "zygote asymmetric cytokinesis in embryo sac" evidence=IMP

GO:0006349 "regulation of gene expression by genetic imprinting" evidence=IMP

GO:0010216 "maintenance of DNA methylation" evidence=IMP

GO:0010424 "DNA methylation on cytosine within a CG sequence" evidence=IMP

GO:0009294 "DNA mediated transformation" evidence=IMP

GO:0006260 "DNA replication" evidence=RCA

GO:0006261 "DNA-dependent DNA replication" evidence=RCA

GO:0006333 "chromatin assembly or disassembly" evidence=RCA

GO:0006342 "chromatin silencing" evidence=RCA

GO:0008283 "cell proliferation" evidence=RCA

GO:0009909 "regulation of flower development" evidence=RCA

GO:0016458 "gene silencing" evidence=RCA

GO:0034968 "histone lysine methylation" evidence=RCA

GO:0051567 "histone H3-K9 methylation" evidence=RCA

GO:0005515 "protein binding" evidence=IPI

GO:0008168 "methyltransferase activity" evidence=TAS

GO:0009910 "negative regulation of flower development" evidence=IMP

TAIR|locus:2122313 AT4G08990 [Arabidopsis thaliana (taxid:3702)]

 Score = 652 (234.6 bits), Expect = 1.1e-62, P = 1.1e-62
 Identities = 126/203 (62%), Positives = 144/203 (70%)

Query:     1 MHVFTGPELKVKLARNSHYAAVRSTANGAPFRAITVRDTIGDLPAVGNGASVTTMEVGFS 60
             MHVF  P  K+ L R  HY  VR+T  GAPFR+ITVRDTIGDLP V NG S    E    
Sbjct:  1281 MHVFDNPGSKISLPRGLHYDTVRNTKFGAPFRSITVRDTIGDLPLVENGESKINKE---- 1336

Query:    61 SPYKSEPVLWFQKKIRGDMLVLNDHISKAMSELNLIRCQKIPKQPGSDWRVLPSEKVV-- 118
               Y++ PV WFQKKIRG+M VL DHI K ++ELNLIRC+KIPK+PG+DWR LP E V   
Sbjct:  1337 --YRTTPVSWFQKKIRGNMSVLTDHICKGLNELNLIRCKKIPKRPGADWRDLPDENVTLS 1394

Query:   119 -----DLIPWCLPNTAEKHNQWKGLFGRLDWEGNFPTSVTDPHPMGMVGTCFHPNQDRII 173
                   L P  L  TA+ HN+WKGL+GRLDW+GN P S+TDP PMG VG CFHP QDRII
Sbjct:  1395 NGLVEKLRPLALSKTAKNHNEWKGLYGRLDWQGNLPISITDPQPMGKVGMCFHPEQDRII 1454

Query:   174 TVRECARSQGFSDSYKFVGDIQH 196
             TVRECARSQGF DSY+F G  +H
Sbjct:  1455 TVRECARSQGFPDSYEFSGTTKH 1477

GO:0003677 "DNA binding" evidence=IEA

GO:0003886 "DNA (cytosine-5-)-methyltransferase activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006306 "DNA methylation" evidence=IEA;ISS

GO:0090116 "C-5 methylation of cytosine" evidence=IEA

TAIR|locus:2140892 MEE57 "maternal effect embryo arrest 57" [Arabidopsis thaliana (taxid:3702)]

 Score = 541 (195.5 bits), Expect = 7.0e-51, P = 7.0e-51
 Identities = 112/202 (55%), Positives = 137/202 (67%)

Query:     1 MHVFTGPELKVKLARNSHYAAVRSTANGAPFRAITVRDTIGDLPAVGNGASVTTMEVGFS 60
             MHVF  P  K+ L++  HYAAV+ST  GAPFR+ITVRD IGDLP + +G S    E    
Sbjct:  1190 MHVFNNPGFKIPLSQGLHYAAVQSTKFGAPFRSITVRDAIGDLPPIESGESKINKE---- 1245

Query:    61 SPYKSEPVLWFQKKIRGDMLVLNDHISKAMSELNLIRCQKIPKQPGSDWRVLPSEKV--- 117
                          ++RG M VL DHI K M+ELNLIRC+KIPK PG+DWR LP E V   
Sbjct:  1246 -------------EMRGSMTVLTDHICKKMNELNLIRCKKIPKTPGADWRDLPDEHVNLS 1292

Query:   118 ----VDLIPWCLPNTAEKHNQWKGLFGRLDWEGNFPTSVTDPHPMGMVGTCFHPNQDRII 173
                  +++P  L N A+ HN +KGL+GRLDW GN PT +T+  PMG+VG CFHP+QDRII
Sbjct:  1293 NGIVKNIVPNLL-NKAKDHNGYKGLYGRLDWHGNLPTCITNLQPMGLVGMCFHPDQDRII 1351

Query:   174 TVRECARSQGFSDSYKFVGDIQ 195
             +VRECARSQGF DSYKF G+I+
Sbjct:  1352 SVRECARSQGFPDSYKFSGNIK 1373

GO:0003677 "DNA binding" evidence=IEA

GO:0003886 "DNA (cytosine-5-)-methyltransferase activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006306 "DNA methylation" evidence=IEA;ISS

GO:0090116 "C-5 methylation of cytosine" evidence=IEA

GO:0009793 "embryo development ending in seed dormancy" evidence=IMP

GO:0006333 "chromatin assembly or disassembly" evidence=RCA

UNIPROTKB|K7ENW7 DNMT1 "DNA (cytosine-5)-methyltransferase 1" [Homo sapiens (taxid:9606)]

 Score = 280 (103.6 bits), Expect = 3.3e-45, Sum P(2) = 3.3e-45
 Identities = 45/75 (60%), Positives = 58/75 (77%)

Query:   120 LIPWCLPNTAEKHNQWKGLFGRLDWEGNFPTSVTDPHPMGMVGTCFHPNQDRIITVRECA 179
             LIPWCLP+T  +HN W GL+GRL+W+G F T+VT+P PMG  G   HP Q R+++VRECA
Sbjct:   271 LIPWCLPHTGNRHNHWAGLYGRLEWDGFFSTTVTNPEPMGKQGRVLHPEQHRVVSVRECA 330

Query:   180 RSQGFSDSYKFVGDI 194
             RSQGF D+Y+  G+I
Sbjct:   331 RSQGFPDTYRLFGNI 345

GO:0003677 "DNA binding" evidence=IEA

GO:0006306 "DNA methylation" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

MGI|MGI:94912 Dnmt1 "DNA methyltransferase (cytosine-5) 1" [Mus musculus (taxid:10090)]

 Score = 290 (107.1 bits), Expect = 1.4e-43, Sum P(2) = 1.4e-43
 Identities = 48/81 (59%), Positives = 61/81 (75%)

Query:   114 SEKVVDLIPWCLPNTAEKHNQWKGLFGRLDWEGNFPTSVTDPHPMGMVGTCFHPNQDRII 173
             S +   LIPWCLP+T  +HN W GL+GRL+W+G F T+VT+P PMG  G   HP Q R++
Sbjct:  1491 SRQFSTLIPWCLPHTGNRHNHWAGLYGRLEWDGFFSTTVTNPEPMGKQGRVLHPEQHRVV 1550

Query:   174 TVRECARSQGFSDSYKFVGDI 194
             +VRECARSQGF DSY+F G+I
Sbjct:  1551 SVRECARSQGFPDSYRFFGNI 1571

GO:0000792 "heterochromatin" evidence=IDA

GO:0003677 "DNA binding" evidence=ISO;IDA

GO:0003690 "double-stranded DNA binding" evidence=ISO

GO:0003723 "RNA binding" evidence=IDA

GO:0003824 "catalytic activity" evidence=IEA

GO:0003886 "DNA (cytosine-5-)-methyltransferase activity" evidence=ISO;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=ISO;IDA

GO:0005657 "replication fork" evidence=IDA

GO:0005721 "centromeric heterochromatin" evidence=IDA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006306 "DNA methylation" evidence=IDA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008134 "transcription factor binding" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IDA

GO:0008270 "zinc ion binding" evidence=IDA

GO:0008327 "methyl-CpG binding" evidence=ISO;IDA

GO:0009008 "DNA-methyltransferase activity" evidence=ISO

GO:0010216 "maintenance of DNA methylation" evidence=ISO;IMP

GO:0010424 "DNA methylation on cytosine within a CG sequence" evidence=ISO

GO:0010468 "regulation of gene expression" evidence=IMP

GO:0010628 "positive regulation of gene expression" evidence=ISO

GO:0016458 "gene silencing" evidence=IDA

GO:0016568 "chromatin modification" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0019904 "protein domain specific binding" evidence=ISO

GO:0032259 "methylation" evidence=IEA

GO:0042127 "regulation of cell proliferation" evidence=IGI

GO:0042826 "histone deacetylase binding" evidence=ISO

GO:0043234 "protein complex" evidence=ISO

GO:0045322 "unmethylated CpG binding" evidence=ISO

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IMP;IDA

GO:0046498 "S-adenosylhomocysteine metabolic process" evidence=ISO

GO:0046499 "S-adenosylmethioninamine metabolic process" evidence=ISO

GO:0046500 "S-adenosylmethionine metabolic process" evidence=ISO

GO:0046872 "metal ion binding" evidence=IEA

GO:0051571 "positive regulation of histone H3-K4 methylation" evidence=ISO

GO:0051573 "negative regulation of histone H3-K9 methylation" evidence=ISO

GO:0051718 "DNA (cytosine-5-)-methyltransferase activity, acting on CpG substrates" evidence=ISO

GO:0071230 "cellular response to amino acid stimulus" evidence=IDA

GO:0090116 "C-5 methylation of cytosine" evidence=IDA

ZFIN|ZDB-GENE-990714-15 dnmt1 "DNA (cytosine-5-)-methyltransferase 1" [Danio rerio (taxid:7955)]

 Score = 286 (105.7 bits), Expect = 3.9e-43, Sum P(2) = 3.9e-43
 Identities = 46/83 (55%), Positives = 64/83 (77%)

Query:   113 PSEKVVD-LIPWCLPNTAEKHNQWKGLFGRLDWEGNFPTSVTDPHPMGMVGTCFHPNQDR 171
             P+++  + LIPWCLP+T  +HN W GL+GRL+W+G F T+VT+P PMG  G   HP Q R
Sbjct:  1370 PADRQFNTLIPWCLPHTGNRHNHWAGLYGRLEWDGFFSTTVTNPEPMGKQGRVLHPEQHR 1429

Query:   172 IITVRECARSQGFSDSYKFVGDI 194
             +++VRECARSQGF D+Y+F G++
Sbjct:  1430 VVSVRECARSQGFPDTYRFFGNV 1452

GO:0003677 "DNA binding" evidence=IEA

GO:0090116 "C-5 methylation of cytosine" evidence=IEA

GO:0006306 "DNA methylation" evidence=IEA;IMP

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003886 "DNA (cytosine-5-)-methyltransferase activity" evidence=IEA

GO:0008134 "transcription factor binding" evidence=IEA

GO:0032776 "DNA methylation on cytosine" evidence=IMP

GO:0035622 "intrahepatic bile duct development" evidence=IMP

GO:0044030 "regulation of DNA methylation" evidence=IMP

GO:0031017 "exocrine pancreas development" evidence=IMP

GO:0048565 "digestive tract development" evidence=IMP

GO:0010842 "retina layer formation" evidence=IMP

GO:0051216 "cartilage development" evidence=IMP

GO:0002088 "lens development in camera-type eye" evidence=IMP

GO:0060042 "retina morphogenesis in camera-type eye" evidence=IMP

GO:0051567 "histone H3-K9 methylation" evidence=IMP

GO:0016740 "transferase activity" evidence=IEA

GO:0032259 "methylation" evidence=IEA

UNIPROTKB|Q92072 DNMT1 "DNA (cytosine-5)-methyltransferase 1" [Gallus gallus (taxid:9031)]

 Score = 281 (104.0 bits), Expect = 6.8e-43, Sum P(2) = 6.8e-43
 Identities = 46/83 (55%), Positives = 63/83 (75%)

Query:   113 PSEKVVD-LIPWCLPNTAEKHNQWKGLFGRLDWEGNFPTSVTDPHPMGMVGTCFHPNQDR 171
             P+++  + LIPWCLP+T  +HN W GL+GRL+W+G F T+VT+P PMG  G   HP Q R
Sbjct:  1401 PADRQFNTLIPWCLPHTGNRHNHWAGLYGRLEWDGFFSTTVTNPEPMGKQGRVLHPEQHR 1460

Query:   172 IITVRECARSQGFSDSYKFVGDI 194
             +++VRECARSQGF D+Y+  G+I
Sbjct:  1461 VVSVRECARSQGFPDTYRLFGNI 1483

GO:0008134 "transcription factor binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003886 "DNA (cytosine-5-)-methyltransferase activity" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|Q24K09 DNMT1 "DNA (cytosine-5)-methyltransferase 1" [Bos taurus (taxid:9913)]

 Score = 280 (103.6 bits), Expect = 3.3e-42, Sum P(2) = 3.3e-42
 Identities = 45/75 (60%), Positives = 58/75 (77%)

Query:   120 LIPWCLPNTAEKHNQWKGLFGRLDWEGNFPTSVTDPHPMGMVGTCFHPNQDRIITVRECA 179
             LIPWCLP+T  +HN W GL+GRL+W+G F T+VT+P PMG  G   HP Q R+++VRECA
Sbjct:  1491 LIPWCLPHTGNRHNHWAGLYGRLEWDGFFSTTVTNPEPMGKQGRVLHPEQHRVVSVRECA 1550

Query:   180 RSQGFSDSYKFVGDI 194
             RSQGF D+Y+  G+I
Sbjct:  1551 RSQGFPDTYRLFGNI 1565

GO:0003886 "DNA (cytosine-5-)-methyltransferase activity" evidence=ISS

GO:0010216 "maintenance of DNA methylation" evidence=ISS

GO:0005634 "nucleus" evidence=IEA

GO:0071230 "cellular response to amino acid stimulus" evidence=IEA

GO:0051573 "negative regulation of histone H3-K9 methylation" evidence=IEA

GO:0051571 "positive regulation of histone H3-K4 methylation" evidence=IEA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IEA

GO:0042127 "regulation of cell proliferation" evidence=IEA

GO:0016458 "gene silencing" evidence=IEA

GO:0010628 "positive regulation of gene expression" evidence=IEA

GO:0008327 "methyl-CpG binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005721 "centromeric heterochromatin" evidence=IEA

GO:0005657 "replication fork" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0016568 "chromatin modification" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0008134 "transcription factor binding" evidence=IEA

UNIPROTKB|P26358 DNMT1 "DNA (cytosine-5)-methyltransferase 1" [Homo sapiens (taxid:9606)]

 Score = 280 (103.6 bits), Expect = 4.2e-42, Sum P(2) = 4.2e-42
 Identities = 45/75 (60%), Positives = 58/75 (77%)

Query:   120 LIPWCLPNTAEKHNQWKGLFGRLDWEGNFPTSVTDPHPMGMVGTCFHPNQDRIITVRECA 179
             LIPWCLP+T  +HN W GL+GRL+W+G F T+VT+P PMG  G   HP Q R+++VRECA
Sbjct:  1495 LIPWCLPHTGNRHNHWAGLYGRLEWDGFFSTTVTNPEPMGKQGRVLHPEQHRVVSVRECA 1554

Query:   180 RSQGFSDSYKFVGDI 194
             RSQGF D+Y+  G+I
Sbjct:  1555 RSQGFPDTYRLFGNI 1569

GO:0008134 "transcription factor binding" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0016568 "chromatin modification" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0005657 "replication fork" evidence=IEA

GO:0005721 "centromeric heterochromatin" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0008327 "methyl-CpG binding" evidence=IEA

GO:0016458 "gene silencing" evidence=IEA

GO:0042127 "regulation of cell proliferation" evidence=IEA

GO:0071230 "cellular response to amino acid stimulus" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0010628 "positive regulation of gene expression" evidence=IMP

GO:0051573 "negative regulation of histone H3-K9 methylation" evidence=IMP

GO:0051571 "positive regulation of histone H3-K4 methylation" evidence=IMP

GO:0010216 "maintenance of DNA methylation" evidence=IDA

GO:0003677 "DNA binding" evidence=IDA

GO:0009008 "DNA-methyltransferase activity" evidence=IDA

GO:0003886 "DNA (cytosine-5-)-methyltransferase activity" evidence=IDA

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=TAS

GO:0006306 "DNA methylation" evidence=TAS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
B1Q3J6	DNM1B_ORYSJ	2, ., 1, ., 1, ., 3, 7	0.7079	0.875	0.1236	yes	no
Q7Y1I7	DNM1A_ORYSJ	2, ., 1, ., 1, ., 3, 7	0.7142	0.8796	0.1244	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00003629001	RecName- Full=Cytosine-specific methyltransferase; EC=2.1.1.37; (1447 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	SAMDC	SubName- Full=Putative uncharacterized protein (Chromosome chr14 scaffold_9, whole genome shotg [...] (360 aa)						•			0.899
	GSVIVG00031656001	RecName- Full=Adenosylhomocysteinase; EC=3.3.1.1; (445 aa)						•			0.899
	METK5	RecName- Full=S-adenosylmethionine synthetase; EC=2.5.1.6;; Catalyzes the formation of S-adenos [...] (391 aa)						•			0.899
	GSVIVG00026899001	SubName- Full=Chromosome chr15 scaffold_40, whole genome shotgun sequence; (474 aa)						•			0.899
	METK4	RecName- Full=S-adenosylmethionine synthetase; EC=2.5.1.6;; Catalyzes the formation of S-adenos [...] (393 aa)						•			0.899
	METK1	RecName- Full=S-adenosylmethionine synthetase; EC=2.5.1.6;; Catalyzes the formation of S-adenos [...] (391 aa)						•			0.899
	pVvSAMDC	SubName- Full=Chromosome chr1 scaffold_22, whole genome shotgun sequence; (360 aa)						•			0.899
	GSVIVG00019871001	SubName- Full=Chromosome chr5 scaffold_2, whole genome shotgun sequence; (350 aa)						•			0.899
	METK2	RecName- Full=S-adenosylmethionine synthetase; EC=2.5.1.6;; Catalyzes the formation of S-adenos [...] (393 aa)						•			0.899
	GSVIVG00017121001	SubName- Full=Chromosome chr11 scaffold_14, whole genome shotgun sequence; (387 aa)						•			0.899

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	216
COG0270	328	COG0270, Dcm, Site-specific DNA methylase [DNA rep	5e-08
pfam00145	320	pfam00145, DNA_methylase, C-5 cytosine-specific DN	8e-06
cd00315	275	cd00315, Cyt_C5_DNA_methylase, Cytosine-C5 specifi	2e-05
TIGR00675	315	TIGR00675, dcm, DNA-methyltransferase (dcm)	1e-04

>gnl|CDD|223348 COG0270, Dcm, Site-specific DNA methylase [DNA replication, recombination, and repair]

 Score = 52.0 bits (125), Expect = 5e-08
 Identities = 28/100 (28%), Positives = 37/100 (37%), Gaps = 14/100 (14%)

Query: 99  QKIPKQPGSDWRVLPSEKVVDLIPWCLPNTAEKHNQWKGLFGRLDWEGNFPTSVTDPHPM 158
           + +PK  G     L            L  +       KG + RL  +   PT V      
Sbjct: 216 KSLPKNKGERLPSLRWG-------EALTLSRRYKG--KGSYIRLHPDKPAPT-VRGGGNE 265

Query: 159 GMVGTCFHPNQDRIITVRECARSQGFSDSYKFVGDIQHII 198
             +    HP +DR +TVRE AR QGF D + F G      
Sbjct: 266 RFI----HPLEDRELTVREAARLQGFPDDFVFPGSKTDQY 301

Length = 328

>gnl|CDD|215747 pfam00145, DNA_methylase, C-5 cytosine-specific DNA methylase

 Score = 45.4 bits (108), Expect = 8e-06
 Identities = 17/41 (41%), Positives = 21/41 (51%)

Query: 157 PMGMVGTCFHPNQDRIITVRECARSQGFSDSYKFVGDIQHI 197
            +G  G  F P   R +T RECAR QGF D + F G    +
Sbjct: 258 ILGKNGERFRPKNIRRLTPRECARLQGFPDDFIFPGSKTQL 298

Length = 320

>gnl|CDD|238192 cd00315, Cyt_C5_DNA_methylase, Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology

 Score = 44.1 bits (105), Expect = 2e-05
 Identities = 20/85 (23%), Positives = 31/85 (36%), Gaps = 6/85 (7%)

Query: 115 EKVVDLIPWCLPNTAEKHNQWKGLFGRLDWEGNFPT--SVTDPHP----MGMVGTCFHPN 168
           + ++       P  +EK    K +    D +   PT  +                    +
Sbjct: 164 KDLILNFFSPFPKPSEKKKTLKDILRIRDPDEPSPTLTASYGKGTGSVHPTAPDMIGKES 223

Query: 169 QDRIITVRECARSQGFSDSYKFVGD 193
             R +T RECAR QGF D ++F G 
Sbjct: 224 NIRRLTPRECARLQGFPDDFEFPGK 248

Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability. Length = 275

>gnl|CDD|233085 TIGR00675, dcm, DNA-methyltransferase (dcm)

 Score = 41.5 bits (98), Expect = 1e-04
 Identities = 18/61 (29%), Positives = 23/61 (37%), Gaps = 1/61 (1%)

Query: 131 KHNQWKGLFGRLDWEGNFPTSVTDPHPMGMVG-TCFHPNQDRIITVRECARSQGFSDSYK 189
                  +   L   G           +     T  HP + R +T RECAR QGF D +K
Sbjct: 228 NRESKSSIIRTLSARGYTFVKGGKSVLIVPHKSTVVHPGRIRRLTPRECARLQGFPDDFK 287

Query: 190 F 190
           F
Sbjct: 288 F 288

All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 315

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	216
TIGR00675	315	dcm DNA-methyltransferase (dcm). All proteins in t	99.9
cd00315	275	Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth	99.82
PF00145	335	DNA_methylase: C-5 cytosine-specific DNA methylase	99.81
COG0270	328	Dcm Site-specific DNA methylase [DNA replication,	99.79
PRK10458	467	DNA cytosine methylase; Provisional	99.4
KOG0919	338	consensus C-5 cytosine-specific DNA methylase [Tra	97.66

>TIGR00675 dcm DNA-methyltransferase (dcm)

Probab=99.90  E-value=3.5e-24  Score=190.67  Aligned_cols=106  Identities=21%  Similarity=0.152  Sum_probs=78.8

Q ss_pred             CHHHHHHHhcCCCCCCCCCCCCCchhhhccccCCCCCccccCCCCCCccccccCCCCCCceecCCC---CCCC-------
Q 046713           91 SELNLIRCQKIPKQPGSDWRVLPSEKVVDLIPWCLPNTAEKHNQWKGLFGRLDWEGNFPTSVTDPH---PMGM-------  160 (216)
Q Consensus        91 s~~~~~r~~~ip~~~G~~~~dlp~~~~~~l~~~~~~~~~~~~~~~~~~y~Rl~~~~p~~Ti~~~~~---~~~~-------  160 (216)
                      ++..++++..++  +|.+|.+...                  ..+...|+|+.|+.+++|+++...   ..+.       
T Consensus       199 ~~~~~~~~~~~~--~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~t~~~~~~  258 (315)
T TIGR00675       199 SEEKKNGLLLLL--ENMRKKEGTG------------------EQIGSFYNRESKSSIIRTLSARGYTFVKGGKSVLIVPH  258 (315)
T ss_pred             CHHHHHHHHHHh--hccccccccc------------------cccceeeccCCccceeeeeeccccccCCCCcceeeccc
Confidence            556788888888  6776654111                  112235667777777777765221   0000       


Q ss_pred             CceeeCCCCCccCcHHHHHHhcCCCCCceecCCHHhHHhhcccccchHHHHHhhcC
Q 046713          161 VGTCFHPNQDRIITVRECARSQGFSDSYKFVGDIQHIIGRLEMLFHLLWRLHWGEN  216 (216)
Q Consensus       161 ~~~~~Hp~~~R~lTvrE~aRlQsFPD~~~f~g~~~~~~~qIGNAVpp~la~aig~~  216 (216)
                      .+..+||.++|.||+|||||||||||+|+|.|+.+++|+||||||||+|+++||+.
T Consensus       259 ~~~~~hp~~~R~lT~RE~aRLQ~FPd~f~f~~s~~~~~~qiGNAVPp~la~~I~~~  314 (315)
T TIGR00675       259 KSTVVHPGRIRRLTPRECARLQGFPDDFKFPVSDSQLYKQAGNAVVVPVIEAIAKQ  314 (315)
T ss_pred             cceeccCCceeeCCHHHHHHHcCCCcccEeCCCHHHHHhhhCCcccHHHHHHHHhh
Confidence            01127999999999999999999999999999999999999999999999999973

All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology

Probab=99.82  E-value=1e-20  Score=165.53  Aligned_cols=77  Identities=23%  Similarity=0.314  Sum_probs=66.2

Q ss_pred             CccccccCCCCCCceecCCCCCCCCcee--------eCCCCCccCcHHHHHHhcCCCCCceecC-CHHhHHhhcccccch
Q 046713          137 GLFGRLDWEGNFPTSVTDPHPMGMVGTC--------FHPNQDRIITVRECARSQGFSDSYKFVG-DIQHIIGRLEMLFHL  207 (216)
Q Consensus       137 ~~y~Rl~~~~p~~Ti~~~~~~~~~~~~~--------~Hp~~~R~lTvrE~aRlQsFPD~~~f~g-~~~~~~~qIGNAVpp  207 (216)
                      +..+++.|++|++||++..+. + .+.+        .||.+.|.||+||+||||||||+|.|.| +.+++|+||||||||
T Consensus       186 d~l~~~~~~~~~~ti~~~~~~-~-~~~~~~~~~~~~~~~~~~R~lT~rE~arlqgFPd~f~f~g~~~~~~~~qiGNAVp~  263 (275)
T cd00315         186 DILRIRDPDEPSPTLTASYGK-G-TGSVHPTAPDMIGKESNIRRLTPRECARLQGFPDDFEFPGKSVTQAYRQIGNSVPV  263 (275)
T ss_pred             HHHhhhcCCCCccceecCCCC-C-ccccccCcccccccCCCCCCCCHHHHHHHcCCCCCcEEcCCCHHHHHHhhcCCcCH
Confidence            344789999999999987753 1 1221        4667899999999999999999999999 999999999999999


Q ss_pred             HHHHHhhc
Q 046713          208 LWRLHWGE  215 (216)
Q Consensus       208 ~la~aig~  215 (216)
                      +++++||+
T Consensus       264 ~~~~~I~~  271 (275)
T cd00315         264 PVAEAIAK  271 (275)
T ss_pred             HHHHHHHH
Confidence            99999986

Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.

>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2

Probab=99.81  E-value=3.3e-20  Score=162.50  Aligned_cols=52  Identities=31%  Similarity=0.416  Sum_probs=45.9

Q ss_pred             eeCCCCCccCcHHHHHHhcCCCCCceecCCHHhHHhhcccccchHHHHHhhc
Q 046713          164 CFHPNQDRIITVRECARSQGFSDSYKFVGDIQHIIGRLEMLFHLLWRLHWGE  215 (216)
Q Consensus       164 ~~Hp~~~R~lTvrE~aRlQsFPD~~~f~g~~~~~~~qIGNAVpp~la~aig~  215 (216)
                      .+||.+.|.||+|||||||||||+|.|.|+.+++|+||||||||+|+++||+
T Consensus       280 ~~hp~~~R~LT~rE~aRLqgFPd~~~f~g~~~~~~~qiGNAVpp~v~~~I~~  331 (335)
T PF00145_consen  280 FIHPEQNRRLTPREAARLQGFPDDFKFPGSKTQQYKQIGNAVPPPVAEAIAK  331 (335)
T ss_dssp             EBTTSSSCB-BHHHHHHHTTSSTTS-S-SSHHHHHHHHHCS--HHHHHHHHH
T ss_pred             ccCCCCCCcCcHHHHHHhCCCCCceEccCCHHHHhceECCCcCHHHHHHHHH
Confidence            6899999999999999999999999999999999999999999999999986

1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....

>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]

Probab=99.79  E-value=8.3e-20  Score=163.41  Aligned_cols=75  Identities=31%  Similarity=0.361  Sum_probs=69.3

Q ss_pred             CCccccccCCCCCCceecCCCCCCCCceeeCCCCCccCcHHHHHHhcCCCCCceecCCHHhHHhhcccccchHHHHHhhc
Q 046713          136 KGLFGRLDWEGNFPTSVTDPHPMGMVGTCFHPNQDRIITVRECARSQGFSDSYKFVGDIQHIIGRLEMLFHLLWRLHWGE  215 (216)
Q Consensus       136 ~~~y~Rl~~~~p~~Ti~~~~~~~~~~~~~~Hp~~~R~lTvrE~aRlQsFPD~~~f~g~~~~~~~qIGNAVpp~la~aig~  215 (216)
                      ...|.||.|+.|++|+....     ....+||...|.||+||+||||||||+|.|.|+.+++|+||||||||+++++||+
T Consensus       244 ~~~~~rl~~~~~~~t~~~~~-----~~~~~h~~~~r~lt~rE~arlq~fPd~~~~~gs~~~~~~qiGnsVp~~l~~~ia~  318 (328)
T COG0270         244 KGSYIRLHPDKPAPTVRGGG-----NERFIHPLEDRELTVREAARLQGFPDDFVFPGSKTDQYRQIGNSVPPLLAEAIAK  318 (328)
T ss_pred             CceeEeCCCCCCCceeecCC-----CcccCCCCcCCCCCHHHHHHhcCCCCceEEeccchhhhhhccCcCCHHHHHHHHH
Confidence            57899999999999998432     2468999999999999999999999999999999999999999999999999997

>PRK10458 DNA cytosine methylase; Provisional

Probab=99.40  E-value=2.8e-13  Score=126.48  Aligned_cols=52  Identities=23%  Similarity=0.218  Sum_probs=44.5

Q ss_pred             eeCCC----CCccCcHHHHHHhcCC--CCCceec--CCHHhHHhhcccccchHHHHHhhc
Q 046713          164 CFHPN----QDRIITVRECARSQGF--SDSYKFV--GDIQHIIGRLEMLFHLLWRLHWGE  215 (216)
Q Consensus       164 ~~Hp~----~~R~lTvrE~aRlQsF--PD~~~f~--g~~~~~~~qIGNAVpp~la~aig~  215 (216)
                      +.||.    ..|.||+|||||||||  ||+|.|.  .+.+++|+|+||||+++++++||+
T Consensus       391 ~~~~~~~~~~~RrLTprE~aRLqGF~~pd~~~F~~~vSdtq~Ykq~GNSV~Vpvv~aIa~  450 (467)
T PRK10458        391 FDDPENQQHRPRRLTPRECARLMGFEAPGEAKFRIPVSDTQAYRQFGNSVVVPVFAAVAK  450 (467)
T ss_pred             ccccccccCCcccCCHHHHHHhCCCCCCccccccCCCCHHHHHHHhCCcccHHHHHHHHH
Confidence            45554    3699999999999999  6666664  578999999999999999999986

>KOG0919 consensus C-5 cytosine-specific DNA methylase [Transcription]

Probab=97.66  E-value=2.6e-05  Score=67.42  Aligned_cols=43  Identities=26%  Similarity=0.336  Sum_probs=35.9

Q ss_pred             CCCCCccCcHHHHHHhcCCCCCceecCC--HHhHHhhcccccchH
Q 046713          166 HPNQDRIITVRECARSQGFSDSYKFVGD--IQHIIGRLEMLFHLL  208 (216)
Q Consensus       166 Hp~~~R~lTvrE~aRlQsFPD~~~f~g~--~~~~~~qIGNAVpp~  208 (216)
                      |-.+-|-+|+||.|||+|||.+|.|...  ..+.|+.+||++=..
T Consensus       283 ~~l~LRYFTprEvArLmgFPe~fefp~~~T~kq~YRLLGNSiNVk  327 (338)
T KOG0919|consen  283 HQLRLRYFTPREVARLMGFPENFEFPPETTNKQKYRLLGNSINVK  327 (338)
T ss_pred             HHHHhhccCHHHHHHHcCCCcccCCCcchhHHHHHHHhcCcccce
Confidence            3346799999999999999999999854  457899999998543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	216
3av4_A	1330	Crystal Structure Of Mouse Dna Methyltransferase 1		1e-44
3pt9_A	873	Crystal Structure Of Mouse Dnmt1(731-1602) In The F		2e-44
3pt6_A	954	Crystal Structure Of Mouse Dnmt1(650-1602) In Compl		2e-44
3swr_A	1002	Structure Of Human Dnmt1 (601-1600) In Complex With		2e-42
3pta_A	956	Crystal Structure Of Human Dnmt1(646-1600) In Compl		2e-42
4ft2_A	784	Crystal Structure Of Zea Mays Zmet2 In Complex H3(1		3e-13
4fsx_A	784	Crystal Structure Of Se-Substituted Zea Mays Zmet2		9e-13

>pdb|3AV4|A Chain A, Crystal Structure Of Mouse Dna Methyltransferase 1 Length = 1330

Iteration: 1
 Score =  175 bits (444), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 98/245 (40%), Positives = 128/245 (52%), Gaps = 58/245 (23%)
Query: 1    MHVFT--GPELKVKLARNSHYAAVRSTANGAPFRAITVRDTIGDLPAVGNGASVTTMEVG 58
            +HVF     +L V +      + +   ++G PFR ITVRDT+ DLP + NGAS + +   
Sbjct: 1044 LHVFAPRACQLSVVVDDKKFVSNITRLSSG-PFRTITVRDTMSDLPEIQNGASNSEI--- 1099
Query: 59   FSSPYKSEPVLWFQKKIRGDML--VLNDHISKAMSELNLIRCQKIPKQPGSDWRVLP--- 113
               PY  EP+ WFQ+++RG     +L DHI K MS L   R + IP  PGSDWR LP   
Sbjct: 1100 ---PYNGEPLSWFQRQLRGSHYQPILRDHICKDMSPLVAARMRHIPLFPGSDWRDLPNIQ 1156
Query: 114  --------------------------------------------SEKVVDLIPWCLPNTA 129
                                                        S +   LIPWCLP+T 
Sbjct: 1157 VRLGDGVIAHKLQYTFHDVKNGYSSTGALRGVCSCAEGKACDPESRQFSTLIPWCLPHTG 1216
Query: 130  EKHNQWKGLFGRLDWEGNFPTSVTDPHPMGMVGTCFHPNQDRIITVRECARSQGFSDSYK 189
             +HN W GL+GRL+W+G F T+VT+P PMG  G   HP Q R+++VRECARSQGF DSY+
Sbjct: 1217 NRHNHWAGLYGRLEWDGFFSTTVTNPEPMGKQGRVLHPEQHRVVSVRECARSQGFPDSYR 1276
Query: 190  FVGDI 194
            F G+I
Sbjct: 1277 FFGNI 1281

>pdb|3PT9|A Chain A, Crystal Structure Of Mouse Dnmt1(731-1602) In The Free State Length = 873

Iteration: 1
 Score =  175 bits (444), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 98/245 (40%), Positives = 128/245 (52%), Gaps = 58/245 (23%)
Query: 1   MHVFT--GPELKVKLARNSHYAAVRSTANGAPFRAITVRDTIGDLPAVGNGASVTTMEVG 58
           +HVF     +L V +      + +   ++G PFR ITVRDT+ DLP + NGAS + +   
Sbjct: 605 LHVFAPRACQLSVVVDDKKFVSNITRLSSG-PFRTITVRDTMSDLPEIQNGASNSEI--- 660
Query: 59  FSSPYKSEPVLWFQKKIRGDML--VLNDHISKAMSELNLIRCQKIPKQPGSDWRVLP--- 113
              PY  EP+ WFQ+++RG     +L DHI K MS L   R + IP  PGSDWR LP   
Sbjct: 661 ---PYNGEPLSWFQRQLRGSHYQPILRDHICKDMSPLVAARMRHIPLFPGSDWRDLPNIQ 717
Query: 114 --------------------------------------------SEKVVDLIPWCLPNTA 129
                                                       S +   LIPWCLP+T 
Sbjct: 718 VRLGDGVIAHKLQYTFHDVKNGYSSTGALRGVCSCAEGKACDPESRQFSTLIPWCLPHTG 777
Query: 130 EKHNQWKGLFGRLDWEGNFPTSVTDPHPMGMVGTCFHPNQDRIITVRECARSQGFSDSYK 189
            +HN W GL+GRL+W+G F T+VT+P PMG  G   HP Q R+++VRECARSQGF DSY+
Sbjct: 778 NRHNHWAGLYGRLEWDGFFSTTVTNPEPMGKQGRVLHPEQHRVVSVRECARSQGFPDSYR 837
Query: 190 FVGDI 194
           F G+I
Sbjct: 838 FFGNI 842

>pdb|3PT6|A Chain A, Crystal Structure Of Mouse Dnmt1(650-1602) In Complex With Dna Length = 954

Iteration: 1
 Score =  175 bits (443), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 98/245 (40%), Positives = 128/245 (52%), Gaps = 58/245 (23%)
Query: 1   MHVFT--GPELKVKLARNSHYAAVRSTANGAPFRAITVRDTIGDLPAVGNGASVTTMEVG 58
           +HVF     +L V +      + +   ++G PFR ITVRDT+ DLP + NGAS + +   
Sbjct: 686 LHVFAPRACQLSVVVDDKKFVSNITRLSSG-PFRTITVRDTMSDLPEIQNGASNSEI--- 741
Query: 59  FSSPYKSEPVLWFQKKIRGDML--VLNDHISKAMSELNLIRCQKIPKQPGSDWRVLP--- 113
              PY  EP+ WFQ+++RG     +L DHI K MS L   R + IP  PGSDWR LP   
Sbjct: 742 ---PYNGEPLSWFQRQLRGSHYQPILRDHICKDMSPLVAARMRHIPLFPGSDWRDLPNIQ 798
Query: 114 --------------------------------------------SEKVVDLIPWCLPNTA 129
                                                       S +   LIPWCLP+T 
Sbjct: 799 VRLGDGVIAHKLQYTFHDVKNGYSSTGALRGVCSCAEGKACDPESRQFSTLIPWCLPHTG 858
Query: 130 EKHNQWKGLFGRLDWEGNFPTSVTDPHPMGMVGTCFHPNQDRIITVRECARSQGFSDSYK 189
            +HN W GL+GRL+W+G F T+VT+P PMG  G   HP Q R+++VRECARSQGF DSY+
Sbjct: 859 NRHNHWAGLYGRLEWDGFFSTTVTNPEPMGKQGRVLHPEQHRVVSVRECARSQGFPDSYR 918
Query: 190 FVGDI 194
           F G+I
Sbjct: 919 FFGNI 923

>pdb|3SWR|A Chain A, Structure Of Human Dnmt1 (601-1600) In Complex With Sinefungin Length = 1002

Iteration: 1
 Score =  168 bits (425), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 98/246 (39%), Positives = 127/246 (51%), Gaps = 59/246 (23%)
Query: 1   MHVFT--GPELKVKLARNSHYAAVRSTANGAPFRAITVRDTIGDLPAVGNGASVTTMEVG 58
           +HVF     +L V +      + +   ++G PFR ITVRDT+ DLP V NGAS   +E+ 
Sbjct: 733 LHVFAPRACQLSVVVDDKKFVSNITRLSSG-PFRTITVRDTMSDLPEVRNGASA--LEIS 789
Query: 59  FSSPYKSEPVLWFQKKIRGDML--VLNDHISKAMSELNLIRCQKIPKQPGSDWRVLP--- 113
               Y  EP  WFQ+++RG     +L DHI K MS L   R + IP  PGSDWR LP   
Sbjct: 790 ----YNGEPQSWFQRQLRGAQYQPILRDHICKDMSALVAARMRHIPLAPGSDWRDLPNIE 845
Query: 114 -------------------------------------SEKVVD--------LIPWCLPNT 128
                                                + K  D        LIPWCLP+T
Sbjct: 846 VRLSDGTMARKLRYTHHDRKNGRSSSGALRGVCSCVEAGKACDPAARQFNTLIPWCLPHT 905
Query: 129 AEKHNQWKGLFGRLDWEGNFPTSVTDPHPMGMVGTCFHPNQDRIITVRECARSQGFSDSY 188
             +HN W GL+GRL+W+G F T+VT+P PMG  G   HP Q R+++VRECARSQGF D+Y
Sbjct: 906 GNRHNHWAGLYGRLEWDGFFSTTVTNPEPMGKQGRVLHPEQHRVVSVRECARSQGFPDTY 965
Query: 189 KFVGDI 194
           +  G+I
Sbjct: 966 RLFGNI 971

>pdb|3PTA|A Chain A, Crystal Structure Of Human Dnmt1(646-1600) In Complex With Dna Length = 956

Iteration: 1
 Score =  168 bits (425), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 97/246 (39%), Positives = 125/246 (50%), Gaps = 59/246 (23%)
Query: 1   MHVFT--GPELKVKLARNSHYAAVRSTANGAPFRAITVRDTIGDLPAVGNGASVTTMEVG 58
           +HVF     +L V +      + +   ++G PFR ITVRDT+ DLP V NGAS   +   
Sbjct: 687 LHVFAPRACQLSVVVDDKKFVSNITRLSSG-PFRTITVRDTMSDLPEVRNGASALEIS-- 743
Query: 59  FSSPYKSEPVLWFQKKIRGDML--VLNDHISKAMSELNLIRCQKIPKQPGSDWRVLP--- 113
               Y  EP  WFQ+++RG     +L DHI K MS L   R + IP  PGSDWR LP   
Sbjct: 744 ----YNGEPQSWFQRQLRGAQYQPILRDHICKDMSALVAARMRHIPLAPGSDWRDLPNIE 799
Query: 114 -------------------------------------SEKVVD--------LIPWCLPNT 128
                                                + K  D        LIPWCLP+T
Sbjct: 800 VRLSDGTMARKLRYTHHDRKNGRSSSGALRGVCSCVEAGKACDPAARQFNTLIPWCLPHT 859
Query: 129 AEKHNQWKGLFGRLDWEGNFPTSVTDPHPMGMVGTCFHPNQDRIITVRECARSQGFSDSY 188
             +HN W GL+GRL+W+G F T+VT+P PMG  G   HP Q R+++VRECARSQGF D+Y
Sbjct: 860 GNRHNHWAGLYGRLEWDGFFSTTVTNPEPMGKQGRVLHPEQHRVVSVRECARSQGFPDTY 919
Query: 189 KFVGDI 194
           +  G+I
Sbjct: 920 RLFGNI 925

>pdb|4FT2|A Chain A, Crystal Structure Of Zea Mays Zmet2 In Complex H3(1-15)k9me2 Peptide And Sah Length = 784

Iteration: 1
 Score = 71.6 bits (174), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 63/199 (31%), Positives = 88/199 (44%), Gaps = 42/199 (21%)
Query: 32  RAITVRDTIGDLPAVGNGASVTTMEVGFSSPYKSEPVLWFQKKIR---GDML-------- 80
           +A+ + D I DLP V N      ME G S      P   FQ+ IR    DML        
Sbjct: 526 KALLLGDAISDLPKVQNHQPNDVMEYGGS------PKTEFQRYIRLSRKDMLDWSFGEGA 579
Query: 81  -----VLNDHISKAMSELNLIRCQKIPKQPGSDWRVLPSEKV--VDLIPW---------- 123
                 L DH    ++  +  R Q+IP + G+++R L   +V   +++ W          
Sbjct: 580 GPDEGKLLDHQPLRLNNDDYERVQQIPVKKGANFRDLKGVRVGANNIVEWDPEIERVKLS 639
Query: 124 ----CLPNTAEKHNQWKGL--FGRLDWEGNFPTSVTDPHPMGMVGTCFHPNQDRIITVRE 177
                +P+ A    + K L  FGRL W+   PT VT   P   V    HP Q R++T+RE
Sbjct: 640 SGKPLVPDYAMSFIKGKSLKPFGRLWWDETVPTVVTRAEPHNQV--IIHPTQARVLTIRE 697
Query: 178 CARSQGFSDSYKFVGDIQH 196
            AR QGF D Y+  G I+ 
Sbjct: 698 NARLQGFPDYYRLFGPIKE 716

>pdb|4FSX|A Chain A, Crystal Structure Of Se-Substituted Zea Mays Zmet2 In Complex With Sah Length = 784

Iteration: 1
 Score = 70.1 bits (170), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 60/198 (30%), Positives = 85/198 (42%), Gaps = 42/198 (21%)
Query: 32  RAITVRDTIGDLPAVGNGASVTTMEVGFSSPYKSEPVLWFQKKIR--------------- 76
           +A+ + D I DLP V N       E G S      P   FQ+ IR               
Sbjct: 526 KALLLGDAISDLPKVQNHQPNDVXEYGGS------PKTEFQRYIRLSRKDXLDWSFGEGA 579
Query: 77  -GDMLVLNDHISKAMSELNLIRCQKIPKQPGSDWRVLPSEKV--VDLIPW---------- 123
             D   L DH    ++  +  R Q+IP + G+++R L   +V   +++ W          
Sbjct: 580 GPDEGKLLDHQPLRLNNDDYERVQQIPVKKGANFRDLKGVRVGANNIVEWDPEIERVKLS 639
Query: 124 ----CLPNTAEKHNQWKGL--FGRLDWEGNFPTSVTDPHPMGMVGTCFHPNQDRIITVRE 177
                +P+ A    + K L  FGRL W+   PT VT   P   V    HP Q R++T+RE
Sbjct: 640 SGKPLVPDYAXSFIKGKSLKPFGRLWWDETVPTVVTRAEPHNQV--IIHPTQARVLTIRE 697
Query: 178 CARSQGFSDSYKFVGDIQ 195
            AR QGF D Y+  G I+
Sbjct: 698 NARLQGFPDYYRLFGPIK 715

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	216
3av4_A	1330	DNA (cytosine-5)-methyltransferase 1; CXXC-type zi	3e-33
3g7u_A	376	Cytosine-specific methyltransferase; DNA-binding,	7e-32
3swr_A	1002	DNA (cytosine-5)-methyltransferase 1; epigenetics,	2e-31
1g55_A	343	DNA cytosine methyltransferase DNMT2; human DNA me	4e-09
1dct_A	324	Protein (modification methylase HAEIII); enzyme, c	2e-08
3qv2_A	327	5-cytosine DNA methyltransferase; DNMT2, ehmeth; H	4e-06
2c7p_A	327	Modification methylase HHAI; DNA methyltransferase	7e-06

>3av4_A DNA (cytosine-5)-methyltransferase 1; CXXC-type zinc finger/C5-methyltransferase family; HET: DNA; 2.75A {Mus musculus} PDB: 3av5_A* 3av6_A* Length = 1330

 Score =  125 bits (313), Expect = 3e-33
 Identities = 96/252 (38%), Positives = 129/252 (51%), Gaps = 59/252 (23%)

Query: 1    MHVFTGPELKVKLARNSH-YAAVRSTANGAPFRAITVRDTIGDLPAVGNGASVTTMEVGF 59
            +HVF     ++ +  +   + +  +  +  PFR ITVRDT+ DLP + NGAS + +    
Sbjct: 1044 LHVFAPRACQLSVVVDDKKFVSNITRLSSGPFRTITVRDTMSDLPEIQNGASNSEI---- 1099

Query: 60   SSPYKSEPVLWFQKKIRGDML--VLNDHISKAMSELNLIRCQKIPKQPGSDWRVLP---- 113
              PY  EP+ WFQ+++RG     +L DHI K MS L   R + IP  PGSDWR LP    
Sbjct: 1100 --PYNGEPLSWFQRQLRGSHYQPILRDHICKDMSPLVAARMRHIPLFPGSDWRDLPNIQV 1157

Query: 114  -------------------------------------------SEKVVDLIPWCLPNTAE 130
                                                       S +   LIPWCLP+T  
Sbjct: 1158 RLGDGVIAHKLQYTFHDVKNGYSSTGALRGVCSCAEGKACDPESRQFSTLIPWCLPHTGN 1217

Query: 131  KHNQWKGLFGRLDWEGNFPTSVTDPHPMGMVGTCFHPNQDRIITVRECARSQGFSDSYKF 190
            +HN W GL+GRL+W+G F T+VT+P PMG  G   HP Q R+++VRECARSQGF DSY+F
Sbjct: 1218 RHNHWAGLYGRLEWDGFFSTTVTNPEPMGKQGRVLHPEQHRVVSVRECARSQGFPDSYRF 1277

Query: 191  VGDIQHI---IG 199
             G+I      +G
Sbjct: 1278 FGNILDRHRQVG 1289

>3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157} Length = 376

 Score =  118 bits (297), Expect = 7e-32
 Identities = 36/174 (20%), Positives = 54/174 (31%), Gaps = 20/174 (11%)

Query: 32  RAITVRDTIGDLPAVGNGASVTTMEVGFSSPYKSEPVLWFQKKIRGDMLVLNDHISKAMS 91
             +TV+D +  LP + +                       + +  G    L   I + + 
Sbjct: 189 DPVTVKDALYGLPDIIDANW---------QSDSESWRTIKKDRKGGFYEKLWGQIPRNVG 239

Query: 92  ELNLIRCQKIPKQPGSDWRVLPSEKVVDLIPWCLPNTAEKHNQWKGLFGRLDWEGNFPTS 151
           +   I   K     G     L S+    ++     + +           RLD  G  PT 
Sbjct: 240 DTESIAKLKNNIISGC-TGTLHSK----IVQERYASLSFGETDKISRSTRLDPNGFCPTL 294

Query: 152 VTDPHP---MGMVGTCFHPNQDRIITVRECARSQGFSDSYKFVGDIQHI---IG 199
                            HP   R+IT RE AR QGF D ++F     H    IG
Sbjct: 295 RAGTARDKGSFQAVRPIHPYHPRVITPREAARLQGFPDWFRFHVTKWHSFRQIG 348

>3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA methyltransferase fold, maintenance methyla transferase; HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A* 3pt6_A* 3pt9_A* 4da4_A* Length = 1002

 Score =  119 bits (300), Expect = 2e-31
 Identities = 92/253 (36%), Positives = 122/253 (48%), Gaps = 60/253 (23%)

Query: 1   MHVFTGPELKVKLARNSHYA-AVRSTANGAPFRAITVRDTIGDLPAVGNGASVTTMEVGF 59
           +HVF     ++ +  +     +  +  +  PFR ITVRDT+ DLP V NG          
Sbjct: 733 LHVFAPRACQLSVVVDDKKFVSNITRLSSGPFRTITVRDTMSDLPEVRNG------ASAL 786

Query: 60  SSPYKSEPVLWFQKKIRG--DMLVLNDHISKAMSELNLIRCQKIPKQPGSDWRVLPSEKV 117
              Y  EP  WFQ+++RG     +L DHI K MS L   R + IP  PGSDWR LP+ +V
Sbjct: 787 EISYNGEPQSWFQRQLRGAQYQPILRDHICKDMSALVAARMRHIPLAPGSDWRDLPNIEV 846

Query: 118 V------------------------------------------------DLIPWCLPNTA 129
                                                             LIPWCLP+T 
Sbjct: 847 RLSDGTMARKLRYTHHDRKNGRSSSGALRGVCSCVEAGKACDPAARQFNTLIPWCLPHTG 906

Query: 130 EKHNQWKGLFGRLDWEGNFPTSVTDPHPMGMVGTCFHPNQDRIITVRECARSQGFSDSYK 189
            +HN W GL+GRL+W+G F T+VT+P PMG  G   HP Q R+++VRECARSQGF D+Y+
Sbjct: 907 NRHNHWAGLYGRLEWDGFFSTTVTNPEPMGKQGRVLHPEQHRVVSVRECARSQGFPDTYR 966

Query: 190 FVGDIQHI---IG 199
             G+I      +G
Sbjct: 967 LFGNILDKHRQVG 979

>1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26 Length = 343

 Score = 54.4 bits (131), Expect = 4e-09
 Identities = 11/68 (16%), Positives = 18/68 (26%), Gaps = 2/68 (2%)

Query: 127 NTAEKHNQWKGLFGRLDWEGNFPTSVTDPHPMGMVGTCFHPNQDRIITVRECARSQGFSD 186
           +  E           +  E  + +            T     + R  T +E A   GF  
Sbjct: 251 SYIEGTGSVLQTAEDVQVENIYKSLTNLSQEEQ--ITKLLILKLRYFTPKEIANLLGFPP 308

Query: 187 SYKFVGDI 194
            + F   I
Sbjct: 309 EFGFPEKI 316

>1dct_A Protein (modification methylase HAEIII); enzyme, cytosine methylase, transferase/DNA complex; HET: DNA C49 5CM; 2.80A {Haemophilus influenzae biotypeaegyptius} SCOP: c.66.1.26 Length = 324

 Score = 52.0 bits (125), Expect = 2e-08
 Identities = 18/67 (26%), Positives = 25/67 (37%), Gaps = 3/67 (4%)

Query: 126 PNTAEKHNQWKGLFGRLDWEGNFPTSVTDPHPMGMVGTCFHPNQDRIITVRECARSQGFS 185
            N      Q  G   +L  +   P  +     +         +  R +TVRECAR QGF 
Sbjct: 231 WNEPAFTVQASGRQCQLHPQA--PVMLKVSKNLN-KFVEGKEHLYRRLTVRECARVQGFP 287

Query: 186 DSYKFVG 192
           D + F  
Sbjct: 288 DDFIFHY 294

>3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica} Length = 327

 Score = 45.6 bits (108), Expect = 4e-06
 Identities = 9/56 (16%), Positives = 18/56 (32%), Gaps = 1/56 (1%)

Query: 139 FGRLDWEGNFPTSVTDPHPMGMVGT-CFHPNQDRIITVRECARSQGFSDSYKFVGD 193
           + ++           +PH + +           R  T  E  +  GFS ++    D
Sbjct: 239 YTKIVEGTGSIYCPIEPHFIPVKKAEDLLNKNLRYFTPNEIKKIHGFSSNFTTQID 294

>2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ... Length = 327

 Score = 44.7 bits (106), Expect = 7e-06
 Identities = 19/102 (18%), Positives = 30/102 (29%), Gaps = 8/102 (7%)

Query: 104 QPGSDWRVLPSEKVVDLIPWCLPNTAEKHNQWKGLFGR-------LDWEGNFPTSVTDPH 156
            P S+   L  ++   ++               G+ G+           G   T      
Sbjct: 197 LPDSEVEHLVIDRKDLVMTNQEIEQTTPKTVRLGIVGKGGQGERIYSTRGIAITLSAYGG 256

Query: 157 PMG-MVGTCFHPNQDRIITVRECARSQGFSDSYKFVGDIQHI 197
            +    G      + R +  RECAR  G+ DSYK        
Sbjct: 257 GIFAKTGGYLVNGKTRKLHPRECARVMGYPDSYKVHPSTSQA 298

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	216
3swr_A	1002	DNA (cytosine-5)-methyltransferase 1; epigenetics,	100.0
3av4_A	1330	DNA (cytosine-5)-methyltransferase 1; CXXC-type zi	100.0
3g7u_A	376	Cytosine-specific methyltransferase; DNA-binding,	100.0
4ft4_B	784	DNA (cytosine-5)-methyltransferase 1; chromodomain	100.0
2c7p_A	327	Modification methylase HHAI; DNA methyltransferase	99.87
3ubt_Y	331	Modification methylase HAEIII; protein-DNA complex	99.8
1g55_A	343	DNA cytosine methyltransferase DNMT2; human DNA me	99.72
2qrv_A	295	DNA (cytosine-5)-methyltransferase 3A; DNA methylt	99.65
3qv2_A	327	5-cytosine DNA methyltransferase; DNMT2, ehmeth; H	99.55
4dkj_A	403	Cytosine-specific methyltransferase; CG-specificit	99.53
4h0n_A	333	DNMT2; SAH binding, transferase; HET: SAH; 2.71A {	99.45
3me5_A	482	Cytosine-specific methyltransferase; structural ge	99.41

>3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA methyltransferase fold, maintenance methyla transferase; HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A* 3pt6_A* 3pt9_A* 4da4_A*

Probab=100.00  E-value=2.3e-43  Score=349.89  Aligned_cols=201  Identities=46%  Similarity=0.881  Sum_probs=161.6

Q ss_pred             CceEEeCCCceeccccCCCCCCCCCCCCHHHHhcCCCCCCCCCCCcccccCcCCCCCCCchhHHHHhhhcCC--CccCCC
Q 046713            8 ELKVKLARNSHYAAVRSTANGAPFRAITVRDTIGDLPAVGNGASVTTMEVGFSSPYKSEPVLWFQKKIRGDM--LVLNDH   85 (216)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~vTv~dAI~DLP~~~~g~~~~~~~~~~~~~y~~~~~~~yqk~mR~~~--~~~~nH   85 (216)
                      .|++.+..+ .|.....+...+|.+++||+|||+|||.+..++......      |...+.++||++||.+.  ..+.+|
T Consensus       742 ~l~~~~~~~-~~~~~~~~~~~~p~~~vTV~DAIsDLP~i~~g~~~~~~~------y~~~p~s~yq~~mR~~~~~~~l~~H  814 (1002)
T 3swr_A          742 QLSVVVDDK-KFVSNITRLSSGPFRTITVRDTMSDLPEVRNGASALEIS------YNGEPQSWFQRQLRGAQYQPILRDH  814 (1002)
T ss_dssp             CCCEEETTE-EECCSCCCSSCCSBCCCCHHHHHTTSCCCCTTCCCSEEC------CCSCCCSHHHHHHHTTCSSCCEECC
T ss_pred             ccccccccc-cccccccccccCCcCCcCHHHHhhhCCccccCccccccc------cCCCCccHHHHHhhcccccccccCc
Confidence            455555544 333333445567778999999999999999887654443      88888999999999753  578899


Q ss_pred             ccCCCCHHHHHHHhcCCCCCCCCCCCCCchhhh-----------------------------------------------
Q 046713           86 ISKAMSELNLIRCQKIPKQPGSDWRVLPSEKVV-----------------------------------------------  118 (216)
Q Consensus        86 ~~~~~s~~~~~r~~~ip~~~G~~~~dlp~~~~~-----------------------------------------------  118 (216)
                      +++.+++..++|+++||..+|++|+|||++...                                               
T Consensus       815 ~~~~~s~~~~~Ri~~IP~~~Gg~wrdlP~~~~~l~~~~~~~~l~~~~~~~~~g~~~~~~l~~~c~~~~~Gk~~~p~~~~~  894 (1002)
T 3swr_A          815 ICKDMSALVAARMRHIPLAPGSDWRDLPNIEVRLSDGTMARKLRYTHHDRKNGRSSSGALRGVCSCVEAGKACDPAARQF  894 (1002)
T ss_dssp             CCCCCCHHHHHHHHTSCCSTTCCGGGCCCCCEECTTSCEEBCCCCCBCCTTTCCCTTCCCCBCSGGGSSSCCCCGGGCCC
T ss_pred             ccccCCHHHHHHHhcCCCCCCCChhhCchhhhcccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            999999999999999998799999999974210                                               


Q ss_pred             -ccccCCCCCccccCCCCCCccccccCCCCCCceecCCCCCCCCceeeCCCCCccCcHHHHHHhcCCCCCceecCCHHhH
Q 046713          119 -DLIPWCLPNTAEKHNQWKGLFGRLDWEGNFPTSVTDPHPMGMVGTCFHPNQDRIITVRECARSQGFSDSYKFVGDIQHI  197 (216)
Q Consensus       119 -~l~~~~~~~~~~~~~~~~~~y~Rl~~~~p~~Ti~~~~~~~~~~~~~~Hp~~~R~lTvrE~aRlQsFPD~~~f~g~~~~~  197 (216)
                       .|++|+++.+.+.++.+.+.|+||+||+|++|++|.+.+++..|+++||.++|.||+|||||||||||+|.|.|+.+++
T Consensus       895 ~~l~p~~~~~~~~r~~~~~~~ygRL~wd~p~~~~it~~~~~~~~g~~~Hp~~~R~lt~rE~arlQ~fPd~~~f~g~~~~~  974 (1002)
T 3swr_A          895 NTLIPWCLPHTGNRHNHWAGLYGRLEWDGFFSTTVTNPEPMGKQGRVLHPEQHRVVSVRECARSQGFPDTYRLFGNILDK  974 (1002)
T ss_dssp             SBSSCTHHHHHGGGTGGGTTTTCBCCTTSCBSSCCSSCCTTCTTCCCBCSSSSSBCCHHHHHHHTTCCTTCCCCSSHHHH
T ss_pred             ccccccccccccccccccCccceeeccCCCCCeeEecCCCCCCCCcccCcccccCCCHHHHHHhCCCCcceEEcCChHHH
Confidence             1222333222223456788999999999977777777666667899999999999999999999999999999999999


Q ss_pred             HhhcccccchHHHHHhhc
Q 046713          198 IGRLEMLFHLLWRLHWGE  215 (216)
Q Consensus       198 ~~qIGNAVpp~la~aig~  215 (216)
                      |+||||||||+||+|||+
T Consensus       975 ~~qiGNaVp~~~~~~i~~  992 (1002)
T 3swr_A          975 HRQVGNAVPPPLAKAIGL  992 (1002)
T ss_dssp             HHHHHHSCCHHHHHHHHH
T ss_pred             heeeeccCCHHHHHHHHH
Confidence            999999999999999996

>3av4_A DNA (cytosine-5)-methyltransferase 1; CXXC-type zinc finger/C5-methyltransferase family; HET: DNA; 2.75A {Mus musculus} PDB: 3av5_A* 3av6_A*

Probab=100.00  E-value=6e-39  Score=324.81  Aligned_cols=186  Identities=49%  Similarity=0.942  Sum_probs=146.7

Q ss_pred             CCCCCCCCCCCCHHHHhcCCCCCCCCCCCcccccCcCCCCCCCchhHHHHhhhcCC--CccCCCccCCCCHHHHHHHhcC
Q 046713           24 STANGAPFRAITVRDTIGDLPAVGNGASVTTMEVGFSSPYKSEPVLWFQKKIRGDM--LVLNDHISKAMSELNLIRCQKI  101 (216)
Q Consensus        24 ~~~~~~~~~~vTv~dAI~DLP~~~~g~~~~~~~~~~~~~y~~~~~~~yqk~mR~~~--~~~~nH~~~~~s~~~~~r~~~i  101 (216)
                      .+....+.+.+||+|||+|||.+..+.......      |...+.++||+.||+..  ..+.+|+++.+++..++|+++|
T Consensus      1068 ~~~~~~p~~~vTV~DAI~DLP~i~~g~~~~~~~------y~~~p~s~~q~~iR~~~~~~~l~~H~~~~~s~~~~~Ri~~i 1141 (1330)
T 3av4_A         1068 TRLSSGPFRTITVRDTMSDLPEIQNGASNSEIP------YNGEPLSWFQRQLRGSHYQPILRDHICKDMSPLVAARMRHI 1141 (1330)
T ss_dssp             CCSSCCSBCCCCHHHHHTTSCCCCTTCCCSEEE------CCSCCCSHHHHHHHCSSCCCEEECCCCCCCCHHHHHHHHHS
T ss_pred             cccccCCcCCCcHHHHhhcCcccccCCcccccc------cCCCcccHHHHHhhccccccccccccccccCHHHHHHHHhc
Confidence            344445567899999999999988765432222      66667899999999765  4688999999999999999999


Q ss_pred             CCCCCCCCCCCCchhh--------hcc---------------------------------------ccCCCCCccccCCC
Q 046713          102 PKQPGSDWRVLPSEKV--------VDL---------------------------------------IPWCLPNTAEKHNQ  134 (216)
Q Consensus       102 p~~~G~~~~dlp~~~~--------~~l---------------------------------------~~~~~~~~~~~~~~  134 (216)
                      |..+|++|+|+|....        ..+                                       .+++++...+..+.
T Consensus      1142 p~~~G~~~~dlp~~~~~l~~g~~~~~l~y~~~~~k~g~~~~~~lrg~~~~~~Gk~~~p~~r~~~tL~p~~~~~~g~~~~~ 1221 (1330)
T 3av4_A         1142 PLFPGSDWRDLPNIQVRLGDGVIAHKLQYTFHDVKNGYSSTGALRGVCSCAEGKACDPESRQFSTLIPWCLPHTGNRHNH 1221 (1330)
T ss_dssp             CSSTTCCGGGCCCCCEECSSSCEEBCCCCCBCCTTTCCCTTSCCCBSSGGGGTSCCCSSSCCCSBSSCTHHHHHGGGTGG
T ss_pred             cCCCCCCcccchhhhhhccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            9778999999986311        000                                       00000000111223


Q ss_pred             CCCccccccCCCCCCceecCCCCCCCCceeeCCCCCccCcHHHHHHhcCCCCCceecCCHHhHHhhcccccchHHHHHhh
Q 046713          135 WKGLFGRLDWEGNFPTSVTDPHPMGMVGTCFHPNQDRIITVRECARSQGFSDSYKFVGDIQHIIGRLEMLFHLLWRLHWG  214 (216)
Q Consensus       135 ~~~~y~Rl~~~~p~~Ti~~~~~~~~~~~~~~Hp~~~R~lTvrE~aRlQsFPD~~~f~g~~~~~~~qIGNAVpp~la~aig  214 (216)
                      +.+.|+||+|++|++|++|...+++..|+++||.++|.||||||||||||||+|+|.|+.+++|+||||||||+||+|||
T Consensus      1222 ~~~~ygRL~~d~p~sttiT~~~~~~k~g~~iHP~q~R~LTVREaARLQsFPDdF~F~Gs~t~~yrQIGNAVPPlLAkAIA 1301 (1330)
T 3av4_A         1222 WAGLYGRLEWDGFFSTTVTNPEPMGKQGRVLHPEQHRVVSVRECARSQGFPDSYRFFGNILDRHRQVGNAVPPPLAKAIG 1301 (1330)
T ss_dssp             GTTTTCBCCTTSCBSSCCSSCCTTSSSCCCBCSSSSSBCCHHHHHHHTTCCTTCCCCSSHHHHHHHHHHSCCHHHHHHHH
T ss_pred             ccccceecccCCCCCceEeCCcccCCCCcccCccccccCCHHHHHHhcCCCCCeEECCCHhhhhEEeEeCcCHHHHHHHH
Confidence            46789999999998888887766666788999999999999999999999999999999999999999999999999999


Q ss_pred             c
Q 046713          215 E  215 (216)
Q Consensus       215 ~  215 (216)
                      +
T Consensus      1302 ~ 1302 (1330)
T 3av4_A         1302 L 1302 (1330)
T ss_dssp             H
T ss_pred             H
Confidence            6

>3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157}

Probab=100.00  E-value=3.9e-38  Score=284.90  Aligned_cols=154  Identities=21%  Similarity=0.210  Sum_probs=119.0

Q ss_pred             CCCCHHHHhcCCCCCCC-CCCCcccccCcCCCCCCCchhHHHHhhhcC---------------CCccCCCccCCCCHHHH
Q 046713           32 RAITVRDTIGDLPAVGN-GASVTTMEVGFSSPYKSEPVLWFQKKIRGD---------------MLVLNDHISKAMSELNL   95 (216)
Q Consensus        32 ~~vTv~dAI~DLP~~~~-g~~~~~~~~~~~~~y~~~~~~~yqk~mR~~---------------~~~~~nH~~~~~s~~~~   95 (216)
                      +.+||+|||+|||.+.. ++......  + ..|...+.+.|++.||..               ...+.+|.++.|++..+
T Consensus       189 ~~~tv~dai~dlp~~~~~~~~~~~~~--~-~~~~~~~~~~y~~~~r~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~  265 (376)
T 3g7u_A          189 DPVTVKDALYGLPDIIDANWQSDSES--W-RTIKKDRKGGFYEKLWGQIPRNVGDTESIAKLKNNIISGCTGTLHSKIVQ  265 (376)
T ss_dssp             CCCCHHHHTTTCCSSCEEESSCSSCC--C-EECCCCCCSHHHHHHHCCCCTTCSCHHHHHHHHTTEESCCEEECCCHHHH
T ss_pred             CCCcHHHHHhcCCccccccccccccc--c-cccCccCccHHHHHhhcCcccccccccccccccccccccccccccCHHHH
Confidence            57899999999998765 22111110  0 012223568899999974               34678999999999999


Q ss_pred             HHHhcCCCCCCCCCCCCCchhhhccccCCCCCccccCCCCCCccccccCCCCCCceecCCCCCC---CCceeeCCCCCcc
Q 046713           96 IRCQKIPKQPGSDWRVLPSEKVVDLIPWCLPNTAEKHNQWKGLFGRLDWEGNFPTSVTDPHPMG---MVGTCFHPNQDRI  172 (216)
Q Consensus        96 ~r~~~ip~~~G~~~~dlp~~~~~~l~~~~~~~~~~~~~~~~~~y~Rl~~~~p~~Ti~~~~~~~~---~~~~~~Hp~~~R~  172 (216)
                      +|++.|+  +|++                         .+.+.|+||+||+||+||+|.+....   ..++++||.++|.
T Consensus       266 ~r~~~~~--~G~~-------------------------~~~~~~~Rl~~d~ps~Ti~~~~~~~~g~~~~~r~~HP~~~R~  318 (376)
T 3g7u_A          266 ERYASLS--FGET-------------------------DKISRSTRLDPNGFCPTLRAGTARDKGSFQAVRPIHPYHPRV  318 (376)
T ss_dssp             HHHHTCC--TTCB-------------------------CTTTCCBBCCTTSCBCCC-------------CCCBCSSSSSB
T ss_pred             HHHHhCC--CCCC-------------------------ccCCceeecCcccCCCceecCcCCCCCcccCccccCCccCcC
Confidence            9999999  7753                         12367999999999999999765321   1245699999999


Q ss_pred             CcHHHHHHhcCCCCCceecCCHHhHHhhcccccchHHHHHhhc
Q 046713          173 ITVRECARSQGFSDSYKFVGDIQHIIGRLEMLFHLLWRLHWGE  215 (216)
Q Consensus       173 lTvrE~aRlQsFPD~~~f~g~~~~~~~qIGNAVpp~la~aig~  215 (216)
                      ||||||||||||||+|+|.|+.+++|+||||||||+||++||+
T Consensus       319 lTvRE~ARlQsFPD~f~f~g~~~~~~~qIGNAVPp~la~aia~  361 (376)
T 3g7u_A          319 ITPREAARLQGFPDWFRFHVTKWHSFRQIGNSVSPIVAEYILK  361 (376)
T ss_dssp             CCHHHHHHHHTCCTTCCCCSSHHHHHHHHHTSCCHHHHHHHHH
T ss_pred             CCHHHHHHhCCCCcceEECCChHHhheeeecCCCHHHHHHHHH
Confidence            9999999999999999999999999999999999999999996

>4ft4_B DNA (cytosine-5)-methyltransferase 1; chromodomain, BAH domain, DNA methyltransferase domain, H3K9 binding, methylation, transferase; HET: DNA MLY SAH; 2.70A {Zea mays} PDB: 4ft2_A* 4fsx_A*

Probab=100.00  E-value=2e-34  Score=280.50  Aligned_cols=180  Identities=31%  Similarity=0.415  Sum_probs=143.7

Q ss_pred             CCCCCCCCHHHHhcCCCCCCCCCCCcccccCcCCCCCCCchhHHHHhhhcC----------------CCccCCCccCCCC
Q 046713           28 GAPFRAITVRDTIGDLPAVGNGASVTTMEVGFSSPYKSEPVLWFQKKIRGD----------------MLVLNDHISKAMS   91 (216)
Q Consensus        28 ~~~~~~vTv~dAI~DLP~~~~g~~~~~~~~~~~~~y~~~~~~~yqk~mR~~----------------~~~~~nH~~~~~s   91 (216)
                      ....+.+|++|||+|||.+..+.......      |...+.+.|++.+|..                ...+.+|.+..++
T Consensus       522 ~~~~~~~t~~dai~dlp~~~~~~~~~~~~------~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~  595 (784)
T 4ft4_B          522 PSLKKALLLGDAISDLPKVQNHQPNDVME------YGGSPKTEFQRYIRLSRKDMLDWSFGEGAGPDEGKLLDHQPLRLN  595 (784)
T ss_dssp             CCCBCCCCHHHHHTTSCCCCSCCCCSEEC------CSSCCCSHHHHHHTCCTTTTTCCTTCSSCCSSTTCEECCCCCCCC
T ss_pred             ccccccccHHHHhhcccccccCCCccccc------cCCCCccHHHHHHhhcccccccccccccccccccccccccccccC
Confidence            33446799999999999988876554443      7778889999999852                3467899999999


Q ss_pred             HHHHHHHhcCCCCCCCCCCCCCchhhhc-----cccCC-----------CCCc--cccCCCCCCccccccCCCCCCceec
Q 046713           92 ELNLIRCQKIPKQPGSDWRVLPSEKVVD-----LIPWC-----------LPNT--AEKHNQWKGLFGRLDWEGNFPTSVT  153 (216)
Q Consensus        92 ~~~~~r~~~ip~~~G~~~~dlp~~~~~~-----l~~~~-----------~~~~--~~~~~~~~~~y~Rl~~~~p~~Ti~~  153 (216)
                      +..++++..|+...|++|++++......     ..+..           .+..  ....+.+.+.|+||.|++|++||+|
T Consensus       596 ~~~~~r~~~i~~~~g~~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~rl~~d~ps~TItt  675 (784)
T 4ft4_B          596 NDDYERVQQIPVKKGANFRDLKGVRVGANNIVEWDPEIERVKLSSGKPLVPDYAMSFIKGKSLKPFGRLWWDETVPTVVT  675 (784)
T ss_dssp             HHHHHHHHHSCSSTTCCGGGSTTEEECGGGCEEECTTSCCCBCTTSSBSSCHHHHHGGGGTCCCTTEECCTTCCCSCCCS
T ss_pred             HHHHHHHHhcccccCCcccccccccccccccccccchhhhcccccCcccccccccccccCCcCccceeccCCCcccceec
Confidence            9999999999988899999987643200     00000           0000  0113345678999999999999999


Q ss_pred             CCCCCCCCceeeCCCCCccCcHHHHHHhcCCCCCceecCCHHhHHhhcccccchHHHHHhhc
Q 046713          154 DPHPMGMVGTCFHPNQDRIITVRECARSQGFSDSYKFVGDIQHIIGRLEMLFHLLWRLHWGE  215 (216)
Q Consensus       154 ~~~~~~~~~~~~Hp~~~R~lTvrE~aRlQsFPD~~~f~g~~~~~~~qIGNAVpp~la~aig~  215 (216)
                      +....  .+.++||.++|+||||||||||||||+|.|.|+.+++|+||||||||+||+|||+
T Consensus       676 ~~~~~--~~~~iHp~~~R~LTpRE~ARLQgFPD~y~f~Gs~~~~ykQIGNAVpp~lA~aIg~  735 (784)
T 4ft4_B          676 RAEPH--NQVIIHPTQARVLTIRENARLQGFPDYYRLFGPIKEKYIQVGNAVAVPVARALGY  735 (784)
T ss_dssp             CCCSS--SSEEECSSSSSBCCHHHHHHHTTCCTTCCCCSCHHHHHHHHHHSCCHHHHHHHHH
T ss_pred             cccCC--CCeecCCCCCcCCcHHHHHHHCCCCCCCEeCCCHHHHHhhccCCCCHHHHHHHHH
Confidence            87653  3578999999999999999999999999999999999999999999999999996

>2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ...

Probab=99.87  E-value=2.5e-23  Score=184.80  Aligned_cols=78  Identities=18%  Similarity=0.092  Sum_probs=69.0

Q ss_pred             ccccccCCCCCCceecCCCC-CCCCceeeCCCCCccCcHHHHHHhcCCCCCceecCCHHhHHhhcccccchHHHHHhhc
Q 046713          138 LFGRLDWEGNFPTSVTDPHP-MGMVGTCFHPNQDRIITVRECARSQGFSDSYKFVGDIQHIIGRLEMLFHLLWRLHWGE  215 (216)
Q Consensus       138 ~y~Rl~~~~p~~Ti~~~~~~-~~~~~~~~Hp~~~R~lTvrE~aRlQsFPD~~~f~g~~~~~~~qIGNAVpp~la~aig~  215 (216)
                      .|+|+.|++|++||++..+. .+..+..+||.+.|.||+|||||||||||+|.|.|+.+++|+||||||||+|+++||+
T Consensus       238 ~~~~~~~~~~~~Ti~~~~~~~~~~~~~~~~~~~~R~LT~rE~aRLQgFPd~f~f~gs~~~~ykqIGNAVp~~l~~~Ia~  316 (327)
T 2c7p_A          238 GERIYSTRGIAITLSAYGGGIFAKTGGYLVNGKTRKLHPRECARVMGYPDSYKVHPSTSQAYKQFGNSVVINVLQYIAY  316 (327)
T ss_dssp             TCEEEETTSCBCCCCSSCCSTTTTTCEEEETTEEEECCHHHHHHHTTCCTTSCCCSSHHHHHHHHHHCCCHHHHHHHHH
T ss_pred             ccccccCCCCcCceecCCCCccCCCCccCCCCCCcCCCHHHHHHHCCCCcCcEeCCCHHHHHhHccCCCCHHHHHHHHH
Confidence            47888899999999987321 1223567899999999999999999999999999999999999999999999999996

>3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A*

Probab=99.80  E-value=1.3e-20  Score=165.43  Aligned_cols=74  Identities=20%  Similarity=0.161  Sum_probs=57.4

Q ss_pred             cccccCCCCCCceecCCCCCCCCceeeCCCCCccCcHHHHHHhcCCCCCceec-CCHHhHHhhcccccchHHHHHhhc
Q 046713          139 FGRLDWEGNFPTSVTDPHPMGMVGTCFHPNQDRIITVRECARSQGFSDSYKFV-GDIQHIIGRLEMLFHLLWRLHWGE  215 (216)
Q Consensus       139 y~Rl~~~~p~~Ti~~~~~~~~~~~~~~Hp~~~R~lTvrE~aRlQsFPD~~~f~-g~~~~~~~qIGNAVpp~la~aig~  215 (216)
                      +.+++++.|..|..+....   .....||.+.|.||+|||||||||||+|.|. ++.+++|+||||||||+||++||+
T Consensus       244 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~R~LT~rE~aRLQgFPd~f~f~~~s~~~~ykqiGNAVpp~la~~I~~  318 (331)
T 3ubt_Y          244 QCQLHPQAPVMLKVSKNLN---KFVEGKEHLYRRLTVRECARVQGFPDDFIFHYESLNDGYKMIGNAVPVNLAYEIAK  318 (331)
T ss_dssp             TCCBCTTSCCCEEEETTEE---ECCTTCGGGCCBCBHHHHHHHHTCCTTCCCCCSBHHHHHHHHHTSCCHHHHHHHHH
T ss_pred             ccccccccceeeeecCCCC---cccCCCCCcCcCCCHHHHHHhCCCCCCCEeCCCCHHHHhhhCccCccHHHHHHHHH
Confidence            4455666655555443211   1122366778999999999999999999995 789999999999999999999996

>1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26

Probab=99.72  E-value=1.2e-18  Score=155.17  Aligned_cols=53  Identities=17%  Similarity=0.102  Sum_probs=50.1

Q ss_pred             eeeCCCCCccCcHHHHHHhcCCCCCceecC--CHHhHHhhcccccchHHHHHhhc
Q 046713          163 TCFHPNQDRIITVRECARSQGFSDSYKFVG--DIQHIIGRLEMLFHLLWRLHWGE  215 (216)
Q Consensus       163 ~~~Hp~~~R~lTvrE~aRlQsFPD~~~f~g--~~~~~~~qIGNAVpp~la~aig~  215 (216)
                      ..+||.+.|.||+|||||||||||+|.|.|  +.+++|+|||||||++|+++||+
T Consensus       285 ~~~h~~~~R~lT~RE~aRLqgFPd~f~f~g~~s~~~~ykqiGNAVpv~v~~~I~~  339 (343)
T 1g55_A          285 TKLLILKLRYFTPKEIANLLGFPPEFGFPEKITVKQRYRLLGNSLNVHVVAKLIK  339 (343)
T ss_dssp             HHHHTTCEECCCHHHHHHHTTCCTTCCCCTTSCHHHHHHHHHHSCCHHHHHHHHH
T ss_pred             eccCCCCccccCHHHHHHHcCCChhhccCCCCCHHHHHHHhcCcccHHHHHHHHH
Confidence            357999999999999999999999999997  78999999999999999999986

>2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens}

Probab=99.65  E-value=2.6e-17  Score=144.21  Aligned_cols=52  Identities=19%  Similarity=0.160  Sum_probs=48.7

Q ss_pred             eeCCCCCccCcHHHHHHhcCCCCCceecCCH--HhHHhhcccccchHHHHHhhc
Q 046713          164 CFHPNQDRIITVRECARSQGFSDSYKFVGDI--QHIIGRLEMLFHLLWRLHWGE  215 (216)
Q Consensus       164 ~~Hp~~~R~lTvrE~aRlQsFPD~~~f~g~~--~~~~~qIGNAVpp~la~aig~  215 (216)
                      .+|+.+.|.||+|||||||||||+|.|.|+.  +++|+|||||||++++++||+
T Consensus       233 ~~~~~~~R~lt~rE~arlqgFPd~~~~~~~~s~~~~~~qiGNaVpv~~~~~i~~  286 (295)
T 2qrv_A          233 VFMNEKEDILWCTEMERVFGFPVHYTDVSNMSRLARQRLLGRSWSVPVIRHLFA  286 (295)
T ss_dssp             EEETTEEECCCHHHHHHHHTCCTTTTCCTTCCHHHHHHHHHTSCCHHHHHHHHG
T ss_pred             cccCCCcCCCCHHHHHHHcCCCHHHeeCCCcCHHHHhccEecCcCHHHHHHHHH
Confidence            3688889999999999999999999999865  999999999999999999997

>3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica}

Probab=99.55  E-value=2.1e-15  Score=133.78  Aligned_cols=52  Identities=15%  Similarity=0.033  Sum_probs=48.9

Q ss_pred             eeCCCCCccCcHHHHHHhcCCCCCceec---CCHHhHHhhcccccchHHHHHhhc
Q 046713          164 CFHPNQDRIITVRECARSQGFSDSYKFV---GDIQHIIGRLEMLFHLLWRLHWGE  215 (216)
Q Consensus       164 ~~Hp~~~R~lTvrE~aRlQsFPD~~~f~---g~~~~~~~qIGNAVpp~la~aig~  215 (216)
                      .+|+...|.||+||+||||||||+|.|.   .+.+++|+|+|||||++++++||+
T Consensus       265 ~~~~~~~R~lt~~E~~rlqgfP~~~~~~~~~~s~~~~y~~~GNsv~v~v~~~i~~  319 (327)
T 3qv2_A          265 DLLNKNLRYFTPNEIKKIHGFSSNFTTQIDGLTDKQQYQCLGNSVSCFVIAQLME  319 (327)
T ss_dssp             GGTTSCCBCCCHHHHHHHTTCCTTCCSCCTTCCHHHHHHHHHTSCCHHHHHHHHH
T ss_pred             eecCCccccCcHHHHHHhCcCCHHHcCCcCCCCHHHHHHHccCccCHHHHHHHHH
Confidence            4588899999999999999999999998   688999999999999999999986

>4dkj_A Cytosine-specific methyltransferase; CG-specificity, DNA intercalation, CPG sequence, cytosine C5 methylation; HET: DNA C37 5CM SAH; 2.15A {Mycoplasma penetrans}

Probab=99.53  E-value=1.3e-15  Score=138.65  Aligned_cols=72  Identities=15%  Similarity=0.004  Sum_probs=58.7

Q ss_pred             ccCCCCCCceecCCCCCCCCc-eeeCCCCCccCcHHHHHHhcCCCC-Cceec-----CCHHhHHhhcccccchHHHHHhh
Q 046713          142 LDWEGNFPTSVTDPHPMGMVG-TCFHPNQDRIITVRECARSQGFSD-SYKFV-----GDIQHIIGRLEMLFHLLWRLHWG  214 (216)
Q Consensus       142 l~~~~p~~Ti~~~~~~~~~~~-~~~Hp~~~R~lTvrE~aRlQsFPD-~~~f~-----g~~~~~~~qIGNAVpp~la~aig  214 (216)
                      ..++..++||+++...   .+ ...+....|.||+|||+||||||| +|.|.     .+.+++|+|+||||++++++|||
T Consensus       309 ~~~~~~~~Tlt~~~~~---~~~~~~~~~~~R~ltprE~~rlqGFpd~~~~~~~~~~~~s~~~~y~~~GNsv~v~v~~~i~  385 (403)
T 4dkj_A          309 YNINGIGPTLTASGAN---SRIKIETQQGVRYLTPLECFKYMQFDVNDFKKVQSTNLISENKMIYIAGNSIPVKILEAIF  385 (403)
T ss_dssp             EETTSBBCCCCSSSGG---GSCEEEETTEEEECCHHHHHHHTTCCHHHHHHHHHTSCSCHHHHHHHHHTSCCHHHHHHHH
T ss_pred             ecCCCcccceecCCCC---ceeEEccCCCcccCCHHHHHHHcCCCHHHhhhhhccCCCCHHHHHhhcCCccCHHHHHHHH
Confidence            3567789999985321   12 123556689999999999999999 79996     69999999999999999999999


Q ss_pred             cC
Q 046713          215 EN  216 (216)
Q Consensus       215 ~~  216 (216)
                      +.
T Consensus       386 ~~  387 (403)
T 4dkj_A          386 NT  387 (403)
T ss_dssp             HT
T ss_pred             HH
Confidence            73

>4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda}

Probab=99.45  E-value=2.7e-14  Score=126.91  Aligned_cols=51  Identities=16%  Similarity=0.070  Sum_probs=47.1

Q ss_pred             eCCCCCccCcHHHHHHhcCCCCCceec--CCHHhHHhhcccccchHHHHHhhc
Q 046713          165 FHPNQDRIITVRECARSQGFSDSYKFV--GDIQHIIGRLEMLFHLLWRLHWGE  215 (216)
Q Consensus       165 ~Hp~~~R~lTvrE~aRlQsFPD~~~f~--g~~~~~~~qIGNAVpp~la~aig~  215 (216)
                      +|+...|.||+|||||||||||+|.|.  .+.+++|+|+||||+++++++||+
T Consensus       277 ~~~~~~R~lt~~E~~rl~gfp~~~~~~~~~s~~~~y~~~GNsv~v~v~~~i~~  329 (333)
T 4h0n_A          277 FKELKLRYFTPKEVLMIMCFPKSYNLPTNISMKQCYRLLGNSVNVKVISELLK  329 (333)
T ss_dssp             HHTTTCBCCCHHHHHHHTTCCTTCCCCTTSCHHHHHHHHHTSCCHHHHHHHHH
T ss_pred             ccCCCcCCCCHHHHHHhCCCCccccCCCCCCHHHHHHHhCCccCHHHHHHHHH
Confidence            377889999999999999999999998  467789999999999999999986

>3me5_A Cytosine-specific methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.75A {Shigella flexneri 2A} PDB: 3lx6_A

Probab=99.41  E-value=1e-13  Score=128.76  Aligned_cols=47  Identities=19%  Similarity=0.217  Sum_probs=44.6

Q ss_pred             CCccCcHHHHHHhcCCC----CCceecCCHHhHHhhcccccchHHHHHhhc
Q 046713          169 QDRIITVRECARSQGFS----DSYKFVGDIQHIIGRLEMLFHLLWRLHWGE  215 (216)
Q Consensus       169 ~~R~lTvrE~aRlQsFP----D~~~f~g~~~~~~~qIGNAVpp~la~aig~  215 (216)
                      ..|.||+||||||||||    |+|.|.++.+++|+|||||||++++++||+
T Consensus       400 ~~R~lTprE~~rlqgFp~~~~~~~~~~~s~~~~y~q~GNsV~v~v~~~i~~  450 (482)
T 3me5_A          400 RPRRLTPRECARLMGFEAPGEAKFRIPVSDTQAYRQFGNSVVVPVFAAVAK  450 (482)
T ss_dssp             CCEECCHHHHHHHHTSSCTTCCCSCCCSCHHHHHHHHHTSCCHHHHHHHHH
T ss_pred             CcccCCHHHHHHHcCCCCccccceeccCCHHHHHHHcCCccChHHHHHHHH
Confidence            47999999999999999    688999999999999999999999999986

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	216
d1g55a_	343	c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId:	2e-09
d2c7pa1	327	c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilu	1e-08
d1dcta_	324	c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus a	1e-07

>d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]} Length = 343

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNMT2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.3 bits (129), Expect = 2e-09
 Identities = 17/132 (12%), Positives = 33/132 (25%), Gaps = 3/132 (2%)

Query: 64  KSEPVLWFQKKIRGDMLVLNDHISKAMSELNLIRCQKIPKQPGSDWRVLPSEKVVDL-IP 122
           K E     Q+     + +L D +         +   K   +      ++       +   
Sbjct: 187 KIEIHRKNQQDSDLSVKMLKDFLEDDTDVNQYLLPPKSLLRYALLLDIVQPTCRRSVCFT 246

Query: 123 WCLPNTAEKHNQWKGLFGRLDWEGNFPTSVTDPHPMGMVGTCFHPNQDRIITVRECARSQ 182
               +  E           +  E  + +            T     + R  T +E A   
Sbjct: 247 KGYGSYIEGTGSVLQTAEDVQVENIYKSLTN--LSQEEQITKLLILKLRYFTPKEIANLL 304

Query: 183 GFSDSYKFVGDI 194
           GF   + F   I
Sbjct: 305 GFPPEFGFPEKI 316

>d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus haemolyticus [TaxId: 726]} Length = 327

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNA methylase HhaI
species: Haemophilus haemolyticus [TaxId: 726]

 Score = 51.5 bits (122), Expect = 1e-08
 Identities = 17/78 (21%), Positives = 22/78 (28%), Gaps = 3/78 (3%)

Query: 122 PWCLPNTAEKHNQWKGLFGRLDWEGNFPTSVTDPHPM---GMVGTCFHPNQDRIITVREC 178
               P T       KG  G   +           +        G      + R +  REC
Sbjct: 220 EQTTPKTVRLGIVGKGGQGERIYSTRGIAITLSAYGGGIFAKTGGYLVNGKTRKLHPREC 279

Query: 179 ARSQGFSDSYKFVGDIQH 196
           AR  G+ DSYK       
Sbjct: 280 ARVMGYPDSYKVHPSTSQ 297

>d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius [TaxId: 197575]} Length = 324

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNA methylase HaeIII
species: Haemophilus aegyptius [TaxId: 197575]

 Score = 48.9 bits (115), Expect = 1e-07
 Identities = 19/67 (28%), Positives = 27/67 (40%), Gaps = 3/67 (4%)

Query: 127 NTAEKHNQWKGLFGRLDWEGNFPTSVTDPHPMGMVGTCFHPNQDRIITVRECARSQGFSD 186
           N      Q  G   +L  +      V+      + G     +  R +TVRECAR QGF D
Sbjct: 232 NEPAFTVQASGRQCQLHPQAPVMLKVSKNLNKFVEG---KEHLYRRLTVRECARVQGFPD 288

Query: 187 SYKFVGD 193
            + F  +
Sbjct: 289 DFIFHYE 295

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	216
d2c7pa1	327	DNA methylase HhaI {Haemophilus haemolyticus [TaxI	99.78
d1dcta_	324	DNA methylase HaeIII {Haemophilus aegyptius [TaxId	99.77
d1g55a_	343	DNMT2 {Human (Homo sapiens) [TaxId: 9606]}	99.74

>d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus haemolyticus [TaxId: 726]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNA methylase HhaI
species: Haemophilus haemolyticus [TaxId: 726]

Probab=99.78  E-value=4.7e-20  Score=158.79  Aligned_cols=74  Identities=19%  Similarity=0.149  Sum_probs=63.6

Q ss_pred             ccCCCCCCceecCCCC-CCCCceeeCCCCCccCcHHHHHHhcCCCCCceecCCHHhHHhhcccccchHHHHHhhc
Q 046713          142 LDWEGNFPTSVTDPHP-MGMVGTCFHPNQDRIITVRECARSQGFSDSYKFVGDIQHIIGRLEMLFHLLWRLHWGE  215 (216)
Q Consensus       142 l~~~~p~~Ti~~~~~~-~~~~~~~~Hp~~~R~lTvrE~aRlQsFPD~~~f~g~~~~~~~qIGNAVpp~la~aig~  215 (216)
                      ..++.+++|+++.... ....+.++|+.++|.||+|||||||||||+|.|.|+.+++|+||||||||+++++||+
T Consensus       242 ~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~R~lT~rE~arLqgFPd~f~~~~s~~~~~~~iGNAVp~~v~~~I~~  316 (327)
T d2c7pa1         242 YSTRGIAITLSAYGGGIFAKTGGYLVNGKTRKLHPRECARVMGYPDSYKVHPSTSQAYKQFGNSVVINVLQYIAY  316 (327)
T ss_dssp             EETTSCBCCCCSSCCSTTTTTCEEEETTEEEECCHHHHHHHTTCCTTSCCCSSHHHHHHHHHHCCCHHHHHHHHH
T ss_pred             cccccccccccccCccccCCCCcccCCCcCcCCCHHHHHHhCCCCCCcEeCCCHHHHHhHccCCCCHHHHHHHHH
Confidence            4567778887765443 2234567899999999999999999999999999999999999999999999999986

>d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius [TaxId: 197575]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNA methylase HaeIII
species: Haemophilus aegyptius [TaxId: 197575]

Probab=99.77  E-value=6.7e-20  Score=156.35  Aligned_cols=74  Identities=22%  Similarity=0.252  Sum_probs=60.0

Q ss_pred             CccccccCCCCCCceecCCCCCCCCceee--CCCCCccCcHHHHHHhcCCCCCceec-CCHHhHHhhcccccchHHHHHh
Q 046713          137 GLFGRLDWEGNFPTSVTDPHPMGMVGTCF--HPNQDRIITVRECARSQGFSDSYKFV-GDIQHIIGRLEMLFHLLWRLHW  213 (216)
Q Consensus       137 ~~y~Rl~~~~p~~Ti~~~~~~~~~~~~~~--Hp~~~R~lTvrE~aRlQsFPD~~~f~-g~~~~~~~qIGNAVpp~la~ai  213 (216)
                      ..+.++.++.|+.|..+...     +.++  |+.+.|.||+|||||||||||+|.|. ++.+++|+||||||||+++++|
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~R~LT~rE~arLqgFPd~~~f~~~s~~~~y~~iGNaV~p~v~~~I  316 (324)
T d1dcta_         242 GRQCQLHPQAPVMLKVSKNL-----NKFVEGKEHLYRRLTVRECARVQGFPDDFIFHYESLNDGYKMIGNAVPVNLAYEI  316 (324)
T ss_dssp             GGGCCBCTTSCCCEEEETTE-----EECCTTTGGGCCBCBHHHHHHHHTCCTTCCCCCSBHHHHHHHHHTSCCHHHHHHH
T ss_pred             ccccccccCCCceecccCCC-----CcccCCCCCcCcCCCHHHHHHHCCCCCCCEeCCCCHHHHHeeEccCccHHHHHHH
Confidence            34556677777666655432     2333  66788999999999999999999995 7899999999999999999999


Q ss_pred             hc
Q 046713          214 GE  215 (216)
Q Consensus       214 g~  215 (216)
                      |+
T Consensus       317 ~~  318 (324)
T d1dcta_         317 AK  318 (324)
T ss_dssp             HH
T ss_pred             HH
Confidence            96

>d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNMT2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=2.6e-20  Score=160.33  Aligned_cols=53  Identities=17%  Similarity=0.102  Sum_probs=49.5

Q ss_pred             eeeCCCCCccCcHHHHHHhcCCCCCceecC--CHHhHHhhcccccchHHHHHhhc
Q 046713          163 TCFHPNQDRIITVRECARSQGFSDSYKFVG--DIQHIIGRLEMLFHLLWRLHWGE  215 (216)
Q Consensus       163 ~~~Hp~~~R~lTvrE~aRlQsFPD~~~f~g--~~~~~~~qIGNAVpp~la~aig~  215 (216)
                      ..+||.+.|.||+|||||||||||+|.|.|  +.+++|+||||||||+++++||+
T Consensus       285 ~~~~~~~~R~LT~rE~arLQgFPd~f~~~~~~s~~~~ykqiGNaVp~~v~~~i~k  339 (343)
T d1g55a_         285 TKLLILKLRYFTPKEIANLLGFPPEFGFPEKITVKQRYRLLGNSLNVHVVAKLIK  339 (343)
T ss_dssp             HHHHTTCEECCCHHHHHHHTTCCTTCCCCTTSCHHHHHHHHHHSCCHHHHHHHHH
T ss_pred             ccCCCCCCcCCCHHHHHHhCCCCCCCEECCCCCHHHHhhhEeCCccHHHHHHHHH
Confidence            357999999999999999999999999987  57889999999999999999986