Citrus Sinensis ID: 046751

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-----
Protein Sequence
MILKLNKLKLPLKWENVAKIAGKGVAPGRLHVARAMVEAGHVENLKHAFADISMMGDMHTPQVVVELIHRTSGLAVLAHPWALKNPAAIIRKLKDVGLHRLEVYRSDGKLVGVIFTLQDGSHYESKKEIESIVLEILCSIIYLMRESEFESQFLL
Secondary Structure (PSIPRED)
cHHHHHHccccccHHHHHHHHcccccccHHHHHHHHHHccccccHHHHHHHHHcccccccHHHHHHHHHHcccEEEEEccccccccHHHHHHHHHccccEEEEEcccccccccEEccccccccccccccccccccccccHHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
cHHHHHHccccccHHHHHHHHccccccccHHHHHHHHHccccccHHHHHHHHccccccccHHHHHHHHHHccccEEEEccccccccHHHHHHHHHccccEEEEEcccccHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHcHHHHHHcc
Coil and Loop (DISEMBL)
milklnklklplkWENVAKIagkgvapgRLHVARAMVEAGHVENLKHAFadismmgdmhtPQVVVELIHRTSglavlahpwalknpAAIIRKLKDVGLHRlevyrsdgklVGVIFTlqdgshyeskKEIESIVLEILCSIIYLMRESEFESQFLL
Flexible Loop (DISEMBL)
milklnklklplkWENVAKIAGKGVAPGRLHVARAMVEAGHVENLKHAFADISMMGDMHTPQVVVELIHRTSGLAVLAHPWALKNPAAIIRKLKDVGLHRLevyrsdgklvGVIFTlqdgshyeskkEIESIVLEILCSIIYLMRESEFESQFLL
Low Complexity Region (SEG)
MIlklnklklplkWENVAKIAGKGVAPGRLHVARAMVEAGHVENLKHAFADISMMGDMHTPQVVVELIHRTSGLAVLAHPWALKNPAAIIRKLKDVGLHRLEVYRSDGKLVGVIFTLQDGSHYESKKEIESIVLEILCSIIYLMRESEFESQFLL
Disordered region (IsUnstruct)
***KLNKLKLPLKWENVAKIAGKGVAPGRLHVARAMVEAGHVENLKHAFADISMMGDMHTPQVVVELIHRTSGLAVLAHPWALKNPAAIIRKLKDVGLHRLEVYRSDGKLVGVIFTLQDGSHYESKKEIESIVLEILCSIIYLMR**********
Disordered Region (DISOPRED)
MILKLNKLKLPLKWENVAKIAGKGVAPGRLHVARAMVEAGHVENLKHAFADISMMGDMHTPQVVVELIHRTSGLAVLAHPWALKNPAAIIRKLKDVGLHRLEVYRSDGKLVGVIFTLQDGSHYESKKEIESIVLEILCSIIYLMRESEFESQFLL
Disordered Region (DISEMBL)
MILKLNKLKLPLKWENVAKIAGKGVAPGRLHVARAMVEAGHVENLKHAFADISMMGDMHTPQVVVELIHRTSGLAVLAHPWALKNPAAIIRKLKDVGLHRLEVYRSDGKLVGVIFTLQDGSHYESKKEIESIVLEILCSIIYLMRES********
Disordered Region (DISPRO)
MILKLNKLKLPLKWENVAKIAGKGVAPGRLHVARAMVEAGHVENLKHAFADISMMGDMHTPQVVVELIHRTSGLAVLAHPWALKNPAAIIRKLKDVGLHRLEVYRSDGKLVGVIFTLQDGSHYESKKEIESIVLEILCSIIYLMRESEFES*FLL
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MILKLNKLKLPLKWENVAKIAGKGVAPGRLHVARAMVEAGHVENLKHAFADISMMGDMHTPQVVVELIHRTSGLAVLAHPWALKNPAAIIRKLKDVGLHRLEVYRSDGKLVGVIFTLQDGSHYESKKEIESIVLEILCSIIYLMRESEFESQFLL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	155
449438183	443	PREDICTED: protein TrpH-like [Cucumis sa	0.716	0.250	0.644	2e-35
297836026	434	PHP domain-containing protein [Arabidops	0.709	0.253	0.615	2e-32
326497631	426	predicted protein [Hordeum vulgare subsp	0.722	0.262	0.571	3e-32
115451271	429	Os03g0192000 [Oryza sativa Japonica Grou	0.935	0.337	0.469	3e-32
18397349	434	Polymerase/histidinol phosphatase-like p	0.709	0.253	0.615	3e-32
15450377	433	At2g13860/F13J11.19 [Arabidopsis thalian	0.709	0.254	0.615	3e-32
218192239	429	hypothetical protein OsI_10344 [Oryza sa	0.935	0.337	0.469	3e-32
242036639	418	hypothetical protein SORBIDRAFT_01g04440	0.722	0.267	0.579	4e-31
242065942	427	hypothetical protein SORBIDRAFT_04g02767	0.916	0.332	0.478	8e-31
357113647	432	PREDICTED: protein trpH-like [Brachypodi	0.722	0.259	0.571	1e-30

>gi|449438183|ref|XP_004136869.1| PREDICTED: protein TrpH-like [Cucumis sativus] gi|449478899|ref|XP_004155448.1| PREDICTED: protein TrpH-like [Cucumis sativus]

 Score =  154 bits (388), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 76/118 (64%), Positives = 89/118 (75%), Gaps = 7/118 (5%)

Query: 1   MILKLNKLKLPLKWENVAKIAGKGVAPGRLHVARAMVEAGHVENLKHAFA-------DIS 53
           M+ KLN+LKLPLKW++VAKI GKGVAPGRLHVARA+VEAG+VENLK AF+          
Sbjct: 193 MVSKLNELKLPLKWDHVAKITGKGVAPGRLHVARALVEAGYVENLKQAFSRYLFDGGPAY 252

Query: 54  MMGDMHTPQVVVELIHRTSGLAVLAHPWALKNPAAIIRKLKDVGLHRLEVYRSDGKLV 111
             G        ++LIH T G+AVLAHPWALKNP A+IR+LKD GLH LEVYRSDG+L 
Sbjct: 253 STGSEPCAAEAIQLIHDTGGMAVLAHPWALKNPVAVIRRLKDAGLHGLEVYRSDGRLA 310

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297836026|ref|XP_002885895.1| PHP domain-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297331735|gb|EFH62154.1| PHP domain-containing protein [Arabidopsis lyrata subsp. lyrata]

 Score =  143 bits (361), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 72/117 (61%), Positives = 87/117 (74%), Gaps = 7/117 (5%)

Query: 1   MILKLNKLKLPLKWENVAKIAGKGVAPGRLHVARAMVEAGHVENLKHAFADI-------S 53
           M+LKLNKLK+PLKWE+V +IAGK VAPGR+HVARA++EAG+VENLK AF           
Sbjct: 180 MVLKLNKLKVPLKWEHVTRIAGKDVAPGRMHVARALLEAGYVENLKQAFTKYLHDGGPAY 239

Query: 54  MMGDMHTPQVVVELIHRTSGLAVLAHPWALKNPAAIIRKLKDVGLHRLEVYRSDGKL 110
             G     +  V+LI +T G+AVLAHPWALKN   +IR+LKD GLH +EVYRSDGKL
Sbjct: 240 STGSEPMAEEAVKLICKTGGVAVLAHPWALKNHVGVIRRLKDAGLHGVEVYRSDGKL 296

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|326497631|dbj|BAK05905.1| predicted protein [Hordeum vulgare subsp. vulgare]

 Score =  143 bits (360), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 68/119 (57%), Positives = 87/119 (73%), Gaps = 7/119 (5%)

Query: 1   MILKLNKLKLPLKWENVAKIAGKGVAPGRLHVARAMVEAGHVENLKHAF-------ADIS 53
           M+ KLN LK+P+KWE+V KIAG+GVAPGRLH+ARA+VEAGHV+N++ AF           
Sbjct: 181 MLAKLNSLKVPIKWEHVTKIAGEGVAPGRLHIARALVEAGHVDNVRQAFNKYLGDDGPAY 240

Query: 54  MMGDMHTPQVVVELIHRTSGLAVLAHPWALKNPAAIIRKLKDVGLHRLEVYRSDGKLVG 112
             G     + VV++I RT G++ LAHPW+LKNP AI+R LK  GLH +EVYRSDGK+ G
Sbjct: 241 ATGSEPFTETVVQMISRTGGISALAHPWSLKNPDAIVRSLKRAGLHAMEVYRSDGKVDG 299

Source: Hordeum vulgare subsp. vulgare

Species: Hordeum vulgare

Genus: Hordeum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115451271|ref|NP_001049236.1| Os03g0192000 [Oryza sativa Japonica Group] gi|108706612|gb|ABF94407.1| PHP domain C-terminal region family protein, expressed [Oryza sativa Japonica Group] gi|113547707|dbj|BAF11150.1| Os03g0192000 [Oryza sativa Japonica Group] gi|222624344|gb|EEE58476.1| hypothetical protein OsJ_09734 [Oryza sativa Japonica Group]

 Score =  142 bits (359), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 78/166 (46%), Positives = 105/166 (63%), Gaps = 21/166 (12%)

Query: 1   MILKLNKLKLPLKWENVAKIAGKGVAPGRLHVARAMVEAGHVENLKHAF-------ADIS 53
           M+ KL++LK+P+KWE+V KIAG+GVAPGRLH+ARAMVE GH+EN++ AF           
Sbjct: 184 MLAKLDRLKVPIKWEHVTKIAGEGVAPGRLHIARAMVEMGHIENIRQAFNKYIGDDGPAY 243

Query: 54  MMGDMHTPQVVVELIHRTSGLAVLAHPWALKNPAAIIRKLKDVGLHRLEVYRSDGKLVGV 113
             G     + VV+LI+RT G++ LAHPWALKNP A+IR LK  GL+ LEVYRSDGK+ G 
Sbjct: 244 ATGSEPFAETVVQLINRTGGISALAHPWALKNPDAVIRALKGAGLNALEVYRSDGKVDGF 303

Query: 114 IFTLQ-------DGSHYESK-----KEIESIVLEI--LCSIIYLMR 145
               +        GS +  +      +I ++ L I  LCS + + R
Sbjct: 304 SELAEKYDLLKIGGSDFHGRGGKDESDIGTVKLAITTLCSFLKMAR 349

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18397349|ref|NP_565360.1| Polymerase/histidinol phosphatase-like protein [Arabidopsis thaliana] gi|20197611|gb|AAD15431.2| expressed protein [Arabidopsis thaliana] gi|20197796|gb|AAM15252.1| expressed protein [Arabidopsis thaliana] gi|330251170|gb|AEC06264.1| Polymerase/histidinol phosphatase-like protein [Arabidopsis thaliana]

 Score =  142 bits (359), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 72/117 (61%), Positives = 87/117 (74%), Gaps = 7/117 (5%)

Query: 1   MILKLNKLKLPLKWENVAKIAGKGVAPGRLHVARAMVEAGHVENLKHAFADI-------S 53
           M+LKLNKLK+PLKWE+V +IAGK VAPGR+HVARA++EAG+VENL+ AF           
Sbjct: 180 MVLKLNKLKIPLKWEHVTRIAGKDVAPGRMHVARALLEAGYVENLRQAFTKYLHDGGPAY 239

Query: 54  MMGDMHTPQVVVELIHRTSGLAVLAHPWALKNPAAIIRKLKDVGLHRLEVYRSDGKL 110
             G     +  V+LI +T G+AVLAHPWALKN   IIR+LKD GLH +EVYRSDGKL
Sbjct: 240 ATGTEPMAEEAVKLICKTGGVAVLAHPWALKNHVGIIRRLKDAGLHGVEVYRSDGKL 296

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15450377|gb|AAK96482.1| At2g13860/F13J11.19 [Arabidopsis thaliana] gi|20466107|gb|AAM19975.1| At2g13860/F13J11.19 [Arabidopsis thaliana]

 Score =  142 bits (359), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 72/117 (61%), Positives = 87/117 (74%), Gaps = 7/117 (5%)

Query: 1   MILKLNKLKLPLKWENVAKIAGKGVAPGRLHVARAMVEAGHVENLKHAFADI-------S 53
           M+LKLNKLK+PLKWE+V +IAGK VAPGR+HVARA++EAG+VENL+ AF           
Sbjct: 179 MVLKLNKLKIPLKWEHVTRIAGKDVAPGRMHVARALLEAGYVENLRQAFTKYLHDGGPAY 238

Query: 54  MMGDMHTPQVVVELIHRTSGLAVLAHPWALKNPAAIIRKLKDVGLHRLEVYRSDGKL 110
             G     +  V+LI +T G+AVLAHPWALKN   IIR+LKD GLH +EVYRSDGKL
Sbjct: 239 ATGTEPMAEEAVKLICKTGGVAVLAHPWALKNHVGIIRRLKDAGLHGVEVYRSDGKL 295

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|218192239|gb|EEC74666.1| hypothetical protein OsI_10344 [Oryza sativa Indica Group]

 Score =  142 bits (359), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 78/166 (46%), Positives = 105/166 (63%), Gaps = 21/166 (12%)

Query: 1   MILKLNKLKLPLKWENVAKIAGKGVAPGRLHVARAMVEAGHVENLKHAF-------ADIS 53
           M+ KL++LK+P+KWE+V KIAG+GVAPGRLH+ARAMVE GH+EN++ AF           
Sbjct: 184 MLAKLDRLKVPIKWEHVTKIAGEGVAPGRLHIARAMVEMGHIENIRQAFNKYIGDDGPAY 243

Query: 54  MMGDMHTPQVVVELIHRTSGLAVLAHPWALKNPAAIIRKLKDVGLHRLEVYRSDGKLVGV 113
             G     + VV+LI+RT G++ LAHPWALKNP A+IR LK  GL+ LEVYRSDGK+ G 
Sbjct: 244 ATGSEPFAETVVQLINRTGGISALAHPWALKNPDAVIRALKGAGLNALEVYRSDGKVDGF 303

Query: 114 IFTLQ-------DGSHYESK-----KEIESIVLEI--LCSIIYLMR 145
               +        GS +  +      +I ++ L I  LCS + + R
Sbjct: 304 SELAEKYDLLKIGGSDFHGRGGKDESDIGTVKLAITTLCSFLKMAR 349

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242036639|ref|XP_002465714.1| hypothetical protein SORBIDRAFT_01g044400 [Sorghum bicolor] gi|241919568|gb|EER92712.1| hypothetical protein SORBIDRAFT_01g044400 [Sorghum bicolor]

 Score =  139 bits (350), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 69/119 (57%), Positives = 85/119 (71%), Gaps = 7/119 (5%)

Query: 1   MILKLNKLKLPLKWENVAKIAGKGVAPGRLHVARAMVEAGHVENLKHAF-------ADIS 53
           M+ KL  LK+P+KWE+V KIAG GVAPGRLH+ARAMVEAG+VEN++ AF           
Sbjct: 175 MLQKLTTLKVPIKWEHVTKIAGDGVAPGRLHIARAMVEAGYVENIRQAFNKYLGDDGPAY 234

Query: 54  MMGDMHTPQVVVELIHRTSGLAVLAHPWALKNPAAIIRKLKDVGLHRLEVYRSDGKLVG 112
             G     + VV+LI RT G++ LAHPW+LKNP AIIR LK  GL+ +EVYRSDGK+ G
Sbjct: 235 ARGSEPFAETVVQLISRTGGISALAHPWSLKNPDAIIRSLKGAGLNCMEVYRSDGKVDG 293

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242065942|ref|XP_002454260.1| hypothetical protein SORBIDRAFT_04g027670 [Sorghum bicolor] gi|241934091|gb|EES07236.1| hypothetical protein SORBIDRAFT_04g027670 [Sorghum bicolor]

 Score =  138 bits (347), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 78/163 (47%), Positives = 103/163 (63%), Gaps = 21/163 (12%)

Query: 1   MILKLNKLKLPLKWENVAKIAGKGVAPGRLHVARAMVEAGHVENLKHAFA-------DIS 53
           M+ KL  L +P+K E+V KIAG GVAPGRLHVARAMV+AG+VENL+ AF+          
Sbjct: 210 MLQKLKDLGMPMKLEDVCKIAGNGVAPGRLHVARAMVDAGYVENLRQAFSRYLFDGGPAY 269

Query: 54  MMGDMHTPQVVVELIHRTSGLAVLAHPWALKNPAAIIRKLKDVGLHRLEVYRSDGKLVGV 113
             G     + VV+L+ RT G+AVLAHPWALKNPAA+++ LK  GLH +EVYRSDGK+ G 
Sbjct: 270 ATGSEPNGKSVVQLVCRTGGVAVLAHPWALKNPAAVVKDLKAAGLHGIEVYRSDGKVSG- 328

Query: 114 IFTLQD--------GSHYESKKEIE-----SIVLEILCSIIYL 143
           +  L D        GS +  + + E     S+ L +L  + +L
Sbjct: 329 LSDLADTYNLLKLGGSDFHGRDDKEEPDVGSVDLPVLAVLNFL 371

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357113647|ref|XP_003558613.1| PREDICTED: protein trpH-like [Brachypodium distachyon]

 Score =  137 bits (346), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 68/119 (57%), Positives = 87/119 (73%), Gaps = 7/119 (5%)

Query: 1   MILKLNKLKLPLKWENVAKIAGKGVAPGRLHVARAMVEAGHVENLKHAF-------ADIS 53
           M+ KL+ LK+P+KWE+V KIAG+GVAPGRLHVARA+VEAG+VEN++ AF           
Sbjct: 182 MLAKLSTLKVPIKWEHVTKIAGEGVAPGRLHVARALVEAGYVENVRQAFNKYLGDDGPAY 241

Query: 54  MMGDMHTPQVVVELIHRTSGLAVLAHPWALKNPAAIIRKLKDVGLHRLEVYRSDGKLVG 112
             G+    + VV+LI RT G++ LAHPW+LKNP AI R LK  GL+ +EVYRSDGK+ G
Sbjct: 242 ATGNEPFTETVVQLITRTGGISALAHPWSLKNPDAIARALKGAGLNAMEVYRSDGKVDG 300

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	155
TAIR|locus:2043738	434	AT2G13840 [Arabidopsis thalian	0.625	0.223	0.586	7.1e-26
UNIPROTKB|Q3Z644	287	DET1610 "PHP domain N-terminal	0.580	0.313	0.326	8.7e-09
TIGR_CMR|DET_1610	287	DET_1610 "PHP domain N-termina	0.580	0.313	0.326	8.7e-09
UNIPROTKB|Q3A9Z4	278	CHY_2227 "PHP domain protein"	0.574	0.320	0.297	0.00092
TIGR_CMR|CHY_2227	278	CHY_2227 "PHP domain protein"	0.574	0.320	0.297	0.00092

TAIR|locus:2043738 AT2G13840 [Arabidopsis thaliana (taxid:3702)]

 Score = 293 (108.2 bits), Expect = 7.1e-26, P = 7.1e-26
 Identities = 61/104 (58%), Positives = 74/104 (71%)

Query:    14 WENVAKIAGKGVAPGRLHVARAMVEAGHVENLKHAFADIS-------MMGDMHTPQVVVE 66
             WE+V +IAGK VAPGR+HVARA++EAG+VENL+ AF             G     +  V+
Sbjct:   193 WEHVTRIAGKDVAPGRMHVARALLEAGYVENLRQAFTKYLHDGGPAYATGTEPMAEEAVK 252

Query:    67 LIHRTSGLAVLAHPWALKNPAAIIRKLKDVGLHRLEVYRSDGKL 110
             LI +T G+AVLAHPWALKN   IIR+LKD GLH +EVYRSDGKL
Sbjct:   253 LICKTGGVAVLAHPWALKNHVGIIRRLKDAGLHGVEVYRSDGKL 296

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003824 "catalytic activity" evidence=IEA

GO:0003887 "DNA-directed DNA polymerase activity" evidence=IEA;ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0006260 "DNA replication" evidence=IEA;ISS

UNIPROTKB|Q3Z644 DET1610 "PHP domain N-terminal region family protein" [Dehalococcoides ethenogenes 195 (taxid:243164)]

 Score = 136 (52.9 bits), Expect = 8.7e-09, P = 8.7e-09
 Identities = 32/98 (32%), Positives = 53/98 (54%)

Query:    14 WENVAKIAGKGVAPGRLHVARAMVEAGHVENLKHAFAD-ISMMGDMHT------PQVVVE 66
             W+ V++IAG+G   GR H+A AM+E G+++N+  AF   I   G  +       P+  V 
Sbjct:   121 WQRVSEIAGEGTV-GRPHIATAMLEKGYIQNMGEAFDKYIGRGGPAYVERIKMNPEEAVR 179

Query:    67 LIHRTSGLAVLAHPWALKNPAAIIRKLKDVGLHRLEVY 104
             L+    G+ V+AHP  + +   ++ +L   GL  LE +
Sbjct:   180 LVLSCGGIPVMAHPLTIMDHEPMVERLVQAGLMGLECH 217

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|DET_1610 DET_1610 "PHP domain N-terminal region family protein" [Dehalococcoides ethenogenes 195 (taxid:243164)]

 Score = 136 (52.9 bits), Expect = 8.7e-09, P = 8.7e-09
 Identities = 32/98 (32%), Positives = 53/98 (54%)

Query:    14 WENVAKIAGKGVAPGRLHVARAMVEAGHVENLKHAFAD-ISMMGDMHT------PQVVVE 66
             W+ V++IAG+G   GR H+A AM+E G+++N+  AF   I   G  +       P+  V 
Sbjct:   121 WQRVSEIAGEGTV-GRPHIATAMLEKGYIQNMGEAFDKYIGRGGPAYVERIKMNPEEAVR 179

Query:    67 LIHRTSGLAVLAHPWALKNPAAIIRKLKDVGLHRLEVY 104
             L+    G+ V+AHP  + +   ++ +L   GL  LE +
Sbjct:   180 LVLSCGGIPVMAHPLTIMDHEPMVERLVQAGLMGLECH 217

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q3A9Z4 CHY_2227 "PHP domain protein" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 99 (39.9 bits), Expect = 0.00092, P = 0.00092
 Identities = 30/101 (29%), Positives = 49/101 (48%)

Query:    15 ENVAKIAGKGVAPGRLHVARAMVEAGHVENLKHAFADISMMG-------DMHTPQVVVEL 67
             E V   AG  +  GR H+AR +++ G+V +++ AF+     G       +  TP+  + +
Sbjct:   118 EEVIAEAGGDIV-GRPHMARVLLKKGYVSSIEEAFSKYLGKGCPAYVPKEKLTPKQAINI 176

Query:    68 IHRTSGLAVLAHPWALKNP----AAIIRKLKDVGLHRLEVY 104
             I +  GL  LAHP  L+        I+ +L   GL  +E Y
Sbjct:   177 IKKAGGLTFLAHPVYLEKDDEGLKKILEELISYGLDGIEAY 217

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|CHY_2227 CHY_2227 "PHP domain protein" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 99 (39.9 bits), Expect = 0.00092, P = 0.00092
 Identities = 30/101 (29%), Positives = 49/101 (48%)

Query:    15 ENVAKIAGKGVAPGRLHVARAMVEAGHVENLKHAFADISMMG-------DMHTPQVVVEL 67
             E V   AG  +  GR H+AR +++ G+V +++ AF+     G       +  TP+  + +
Sbjct:   118 EEVIAEAGGDIV-GRPHMARVLLKKGYVSSIEEAFSKYLGKGCPAYVPKEKLTPKQAINI 176

Query:    68 IHRTSGLAVLAHPWALKNP----AAIIRKLKDVGLHRLEVY 104
             I +  GL  LAHP  L+        I+ +L   GL  +E Y
Sbjct:   177 IKKAGGLTFLAHPVYLEKDDEGLKKILEELISYGLDGIEAY 217


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.323   0.137   0.400    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      155       144   0.00091  102 3  11 22  0.41    31
                                                     30  0.48    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  5
  No. of states in DFA:  567 (60 KB)
  Total size of DFA:  130 KB (2083 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  14.38u 0.14s 14.52t   Elapsed:  00:00:01
  Total cpu time:  14.38u 0.14s 14.52t   Elapsed:  00:00:01
  Start:  Thu May  9 22:36:51 2013   End:  Thu May  9 22:36:52 2013

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	155
cd07438	155	cd07438, PHP_HisPPase_AMP, Polymerase and Histidin	7e-08

>gnl|CDD|213993 cd07438, PHP_HisPPase_AMP, Polymerase and Histidinol Phosphatase domain of Histidinol phosphate phosphatase (HisPPase) AMP bound

 Score = 48.5 bits (117), Expect = 7e-08
 Identities = 22/59 (37%), Positives = 32/59 (54%), Gaps = 7/59 (11%)

Query: 56  GDMH---TPQVVVELIHRTSGLAVLAHPWALKNPA----AIIRKLKDVGLHRLEVYRSD 107
            ++H   +P+  +ELIH   G+AVLAHP   K        +I +LK+ GL  +EVY   
Sbjct: 69  REVHILGSPEEAIELIHAAGGVAVLAHPGLYKLSRKKLEELIEELKEAGLDGIEVYHPY 127

The PHP domain of this HisPPase family has an unknown function. It has a second domain inserted in the middle that binds adenosine 5-monophosphate (AMP). The PHP (also called histidinol phosphatase-2/HIS2) domain is associated with several types of DNA polymerases, such as PolIIIA and family X DNA polymerases, stand alone histidinol phosphate phosphatases (HisPPases), and a number of uncharacterized protein families. HisPPase catalyzes the eighth step of histidine biosynthesis, in which L-histidinol phosphate undergoes dephosphorylation to give histidinol. The PHP domain has four conserved sequence motifs and contains an invariant histidine that is involved in metal ion coordination. The PHP domain of HisPPase is structurally homologous to the other members of the PHP family that have a distorted (beta/alpha)7 barrel fold with a trinuclear metal site on the C-terminal side of the barrel. Length = 155

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	155
COG0613	258	Predicted metal-dependent phosphoesterases (PHP fa	99.58
PRK09248	246	putative hydrolase; Validated	98.79
TIGR00375	374	conserved hypothetical protein TIGR00375. The memb	98.33
PF13263	56	PHP_C: PHP-associated; PDB: 2Z4G_B 2YXO_B 2YZ5_A 3	97.51
PRK08392	215	hypothetical protein; Provisional	97.12
PRK07328	269	histidinol-phosphatase; Provisional	97.05
TIGR01856	253	hisJ_fam histidinol phosphate phosphatase HisJ fam	96.82
PRK08123	270	histidinol-phosphatase; Reviewed	96.6
PRK05588	255	histidinol-phosphatase; Provisional	96.16
PRK07945	335	hypothetical protein; Provisional	96.1
PRK06361	212	hypothetical protein; Provisional	96.09
PRK06740	331	histidinol-phosphatase; Validated	96.03
PRK08609	570	hypothetical protein; Provisional	95.49
PRK07329	246	hypothetical protein; Provisional	95.41
PRK00912	237	ribonuclease P protein component 3; Provisional	94.89
COG1379	403	PHP family phosphoesterase with a Zn ribbon [Gener	93.62
COG1387	237	HIS2 Histidinol phosphatase and related hydrolases	89.61
COG4464	254	CapC Capsular polysaccharide biosynthesis protein	88.22
COG0613	258	Predicted metal-dependent phosphoesterases (PHP fa	84.16
PRK00448	1437	polC DNA polymerase III PolC; Validated	80.07

>COG0613 Predicted metal-dependent phosphoesterases (PHP family) [General function prediction only]

Probab=99.58  E-value=6.5e-15  Score=121.73  Aligned_cols=122  Identities=27%  Similarity=0.359  Sum_probs=105.5

Q ss_pred             HHHhCCCCCCHHHHHHHhCCCCCCCHHHHHHHHHHcCCCCCHHHHHHHHHhcCCC---------CCHHHHHHHHHhcCCe
Q 046751            4 KLNKLKLPLKWENVAKIAGKGVAPGRLHVARAMVEAGHVENLKHAFADISMMGDM---------HTPQVVVELIHRTSGL   74 (155)
Q Consensus         4 ~L~~~G~~I~~e~v~~~a~~~~~i~r~Hia~~Lv~~g~~~~~~~af~~~~~l~~g---------~~~~e~I~~I~~aGGv   74 (155)
                      ++...+++-.++.+...++.+ .+.|+|+++.+++.+++++....|++|  +..+         .+.+..|..++.+||+
T Consensus       110 ~~~~~~~~h~~~~~~~~~~~~-~~~~~h~~~~~ve~~~~~~~~~~fn~~--~~~~~~~~~~~~~~~~~~~i~~~~ga~g~  186 (258)
T COG0613         110 RLGKAIIPHPFEGARKLAGLG-AITRAHIARDAVEVGNASTRQGVFNKY--LKRGAPKYVPPEWADSEAHVGAIHGAGGT  186 (258)
T ss_pred             hCCccccCcchHHHHhcCCcc-cchhhhhhhhhhccccccchHHHHHHH--HhccCcccCcccccCHHHHHHHHhhceeE
Confidence            344457788888887777654 478999999999999999999999999  7665         7999999999999999


Q ss_pred             EEecCCCCcCCh-HHHHHHHHHcCCCEEEEecCCCCc----------ccccceeeecCCCCCCCc
Q 046751           75 AVLAHPWALKNP-AAIIRKLKDVGLHRLEVYRSDGKL----------VGVIFTLQDGSHYESKKE  128 (155)
Q Consensus        75 ~VlAHP~~~~~~-~~~l~~l~~~GldGIEv~~~~~~~----------~~~~L~~tgGSD~H~~~~  128 (155)
                      +|+|||.+++.. ..++..+++.|.||+|++++..++          +.++++.|+|||||.+..
T Consensus       187 ~v~ahp~r~~~~~~~lv~~~~~~~~~~ie~~~~~~~~~~~~~~~~~~k~~~~l~s~gs~fh~~~~  251 (258)
T COG0613         187 AVLAHPGRYDLSLKRLVEAFADHGGDGIEVIYGAISPNPREVLALLAKEFGLLASVGSDFHTPGD  251 (258)
T ss_pred             EEeccccccccchhHHHHHHHhcCCCceEEecccCCcchHHHHHHHHHHhhhhhcccccccCCCc
Confidence            999999987643 678899999999999999999887          368999999999998764

>PRK09248 putative hydrolase; Validated

Probab=98.79  E-value=1.4e-08  Score=82.70  Aligned_cols=79  Identities=18%  Similarity=0.175  Sum_probs=60.4

Q ss_pred             CHHHHHHHHHhcCCeEEecCCCCcC---ChHHHHHHHHHcCCCEEEEecCCC------C--c--------ccccceeeec
Q 046751           60 TPQVVVELIHRTSGLAVLAHPWALK---NPAAIIRKLKDVGLHRLEVYRSDG------K--L--------VGVIFTLQDG  120 (155)
Q Consensus        60 ~~~e~I~~I~~aGGv~VlAHP~~~~---~~~~~l~~l~~~GldGIEv~~~~~------~--~--------~~~~L~~tgG  120 (155)
                      .++++++++ ++|++.|||||.+..   ...++++.+++.|+ +||+.+++.      +  +        .++|++.|.|
T Consensus       114 ~~~~~i~~l-~~g~~~vLAHP~~~~~~~~~~~~~~~~~~~g~-~lEvN~~~l~~~~~g~~~~~~~~~~~~~~~g~~~~~g  191 (246)
T PRK09248        114 NTQALINAI-KNGRVDIIGHPGNPKYPIDIEAVVKAAKEHNV-ALEINNSSFGHSRKGSEDNCRAIAALCKKAGVWVALG  191 (246)
T ss_pred             HHHHHHHHH-hcCCCCEEECcCCCCCcccHHHHHHHHHHhCC-EEEEECCCCccCCCCCcChHHHHHHHHHHcCCeEEEe
Confidence            356778888 899999999998643   23567788888888 999988754      1  1        3789999999


Q ss_pred             CCCCCCCcccceeeEeeehhhhhh
Q 046751          121 SHYESKKEIESIVLEILCSIIYLM  144 (155)
Q Consensus       121 SD~H~~~~~~~~~~~~~~~~~~~~  144 (155)
                      ||+|.+.+++ +   +..++-++.
T Consensus       192 SDAH~~~~vg-~---~~~~~~~~~  211 (246)
T PRK09248        192 SDAHIAFDIG-N---FEEALKILD  211 (246)
T ss_pred             CCCCChhhhc-c---HHHHHHHHH
Confidence            9999999998 4   444444443

>TIGR00375 conserved hypothetical protein TIGR00375

Probab=98.33  E-value=1.1e-06  Score=76.60  Aligned_cols=81  Identities=11%  Similarity=-0.052  Sum_probs=61.4

Q ss_pred             CCHHHHHHHHHhcCCeEEecCCCCcCC----hHHHHHHHHHcCCCEEEEecCCCCc------ccccceeeecCCCCCCC-
Q 046751           59 HTPQVVVELIHRTSGLAVLAHPWALKN----PAAIIRKLKDVGLHRLEVYRSDGKL------VGVIFTLQDGSHYESKK-  127 (155)
Q Consensus        59 ~~~~e~I~~I~~aGGv~VlAHP~~~~~----~~~~l~~l~~~GldGIEv~~~~~~~------~~~~L~~tgGSD~H~~~-  127 (155)
                      ++..+.++.+++.||++|.||+++...    ...-+.+.....-|+||+.++..+.      +..++...++||+|.+. 
T Consensus       114 ~~~~~~~~~v~~~gGi~iPAHiftP~~Sl~g~~~~~~~~~g~~p~avElglS~d~~ma~~~s~L~~~~~ISnSDAHsl~p  193 (374)
T TIGR00375       114 YETGLNLEKVQDYGGLFGPAHIFTPWTSLYKSGDSSSDCYVFDPDFVELGLSADTDMADHISELNDYPFLTNSDAHSLGP  193 (374)
T ss_pred             ecHHHHHHHhhcCCeEEEeCCCCCCcccccccccchhhhhcCCCceEEEeccCCHHHHHHhHHhcCCCeEeecCCCCCCh
Confidence            678889999999999999999997431    0011111111122999999998775      35788999999999988 


Q ss_pred             -cccceeeEeeeh
Q 046751          128 -EIESIVLEILCS  139 (155)
Q Consensus       128 -~~~~~~~~~~~~  139 (155)
                       ++|+-++.|+..
T Consensus       194 ~~IGre~n~~~~~  206 (374)
T TIGR00375       194 HRLGREFNQLEVQ  206 (374)
T ss_pred             hHhCCceEEEecC
Confidence             999999999653

The member of this family from Methanococcus jannaschii, MJ0043, is considerably longer and appears to contain an intein N-terminal to the region of homology.

>PF13263 PHP_C: PHP-associated; PDB: 2Z4G_B 2YXO_B 2YZ5_A 3DCP_B

Probab=97.51  E-value=1.3e-05  Score=51.68  Aligned_cols=29  Identities=14%  Similarity=-0.017  Sum_probs=20.8

Q ss_pred             ccccceeeecCCCCCCCcccceeeEeeeh
Q 046751          111 VGVIFTLQDGSHYESKKEIESIVLEILCS  139 (155)
Q Consensus       111 ~~~~L~~tgGSD~H~~~~~~~~~~~~~~~  139 (155)
                      +++++++++|||+|.+..+|+.++.|+..
T Consensus        12 ~~~~lp~~~gSDAH~~~~vG~~~t~~~~~   40 (56)
T PF13263_consen   12 EKYGLPFTGGSDAHFLEEVGRGYTEFEGP   40 (56)
T ss_dssp             HHTT--EEEE--BSSGGGTTTTHHHH---
T ss_pred             HHcCCCeEeEEcccChhhcCCEeeecccc
Confidence            48999999999999999999999999543

>PRK08392 hypothetical protein; Provisional

Probab=97.12  E-value=0.0015  Score=52.33  Aligned_cols=83  Identities=10%  Similarity=0.083  Sum_probs=54.3

Q ss_pred             HHHHHHHhcCCeEEecCCCCcC---------ChHHHHHHHHHcCCCEEEEecCCCCc--------ccccceeeecCCCCC
Q 046751           63 VVVELIHRTSGLAVLAHPWALK---------NPAAIIRKLKDVGLHRLEVYRSDGKL--------VGVIFTLQDGSHYES  125 (155)
Q Consensus        63 e~I~~I~~aGGv~VlAHP~~~~---------~~~~~l~~l~~~GldGIEv~~~~~~~--------~~~~L~~tgGSD~H~  125 (155)
                      ..++++ +.+.+-|+|||....         ...+.++.+++.| -.+|+-.....+        .+.|..+|-|||+|.
T Consensus       108 ~~~~~~-~~~~~dvlgH~d~~~~~~~~~~~~~~~~i~~~~~~~g-~~lEiNt~~~~p~~~~l~~~~~~G~~~~igSDAH~  185 (215)
T PRK08392        108 LVKLAL-MDENVDIIGHFGNSFPYIGYPSEEELKEILDLAEAYG-KAFEISSRYRVPDLEFIRECIKRGIKLTFASDAHR  185 (215)
T ss_pred             HHHHHH-hcCCCCEEeCCCccccCCCCchHHHHHHHHHHHHHhC-CEEEEeCCCCCCCHHHHHHHHHcCCEEEEeCCCCC
Confidence            344555 568999999996321         1234556666665 789987532222        377999999999999


Q ss_pred             CCcccceeeEeeehhhhhhhhhhhhhc
Q 046751          126 KKEIESIVLEILCSIIYLMRESEFESQ  152 (155)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (155)
                      +.++|.    |+.++- +.|+--|+.|
T Consensus       186 ~~~vg~----~~~a~~-~~~~~g~~~~  207 (215)
T PRK08392        186 PEDVGN----VSWSLK-VFKKAGGKKE  207 (215)
T ss_pred             hHHCCc----HHHHHH-HHHHcCCCHH
Confidence            999995    555544 3444455443

>PRK07328 histidinol-phosphatase; Provisional

Probab=97.05  E-value=0.001  Score=54.85  Aligned_cols=70  Identities=16%  Similarity=0.121  Sum_probs=48.5

Q ss_pred             HHHHHHHhcCCeEEecCCCCcC-----C-------hHHHHHHHHHcCCCEEEEecCCCCc---------------ccccc
Q 046751           63 VVVELIHRTSGLAVLAHPWALK-----N-------PAAIIRKLKDVGLHRLEVYRSDGKL---------------VGVIF  115 (155)
Q Consensus        63 e~I~~I~~aGGv~VlAHP~~~~-----~-------~~~~l~~l~~~GldGIEv~~~~~~~---------------~~~~L  115 (155)
                      .+++++. .+.+-|+|||....     .       .+++++.+++.| -++|+-.+..+.               .++|.
T Consensus       145 ~~~~~~~-~~~~dvlgH~d~i~~~~~~~~~~~~~~~~~il~~~~~~g-~~lEiNt~~~r~~~~~~yp~~~il~~~~~~g~  222 (269)
T PRK07328        145 LVEQAAR-SGLFDIIGHPDLIKKFGHRPREDLTELYEEALDVIAAAG-LALEVNTAGLRKPVGEIYPSPALLRACRERGI  222 (269)
T ss_pred             HHHHHHH-cCCCCEeeCccHHHHcCCCCchhHHHHHHHHHHHHHHcC-CEEEEEchhhcCCCCCCCCCHHHHHHHHHcCC
Confidence            3455554 67899999997421     0       134556666655 589988753221               37899


Q ss_pred             eeeecCCCCCCCcccceee
Q 046751          116 TLQDGSHYESKKEIESIVL  134 (155)
Q Consensus       116 ~~tgGSD~H~~~~~~~~~~  134 (155)
                      .+|-|||+|.+.++|.++.
T Consensus       223 ~itigSDAH~~~~vg~~~~  241 (269)
T PRK07328        223 PVVLGSDAHRPEEVGFGFA  241 (269)
T ss_pred             CEEEeCCCCCHHHHhccHH
Confidence            9999999999999997543

>TIGR01856 hisJ_fam histidinol phosphate phosphatase HisJ family

Probab=96.82  E-value=0.0015  Score=53.53  Aligned_cols=71  Identities=17%  Similarity=0.079  Sum_probs=47.6

Q ss_pred             HHHHHHHhcCCeEEecCCCCcC----C--------------hHHHHHHHHHcCCCEEEEecCCCCc--------------
Q 046751           63 VVVELIHRTSGLAVLAHPWALK----N--------------PAAIIRKLKDVGLHRLEVYRSDGKL--------------  110 (155)
Q Consensus        63 e~I~~I~~aGGv~VlAHP~~~~----~--------------~~~~l~~l~~~GldGIEv~~~~~~~--------------  110 (155)
                      .+.++++...-.-|+|||....    .              .+++++.+++.| -+||+-.+..+.              
T Consensus       146 ~~~~~i~~~~~~dvlgH~Dli~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~g-~~lEiNt~g~r~~~~~~yP~~~il~~  224 (253)
T TIGR01856       146 SVYDSIQALFKPLVIGHIDLVQKFGPLFTDVSSFSDEVYELLQRILKLVASQG-KALEFNTSGLRKPLEEAYPSKELLNL  224 (253)
T ss_pred             HHHHHHHcCCCCCCcccHhHHHHhCccccccccccHHHHHHHHHHHHHHHHcC-CEEEEEcHhhcCCCCCCCCCHHHHHH
Confidence            3445566543357999995311    1              134555555655 689998764321              


Q ss_pred             -ccccceeeecCCCCCCCcccceee
Q 046751          111 -VGVIFTLQDGSHYESKKEIESIVL  134 (155)
Q Consensus       111 -~~~~L~~tgGSD~H~~~~~~~~~~  134 (155)
                       .++|..+|-|||+|.+.++|.++.
T Consensus       225 ~~~~g~~itlgSDAH~~~~vg~~~~  249 (253)
T TIGR01856       225 AKELGIPLVLGSDAHGPGDVGLSYH  249 (253)
T ss_pred             HHHcCCCEEecCCCCCHHHHhhhHH
Confidence             377999999999999999998654

This model represents the histidinol phosphate phosphatase HisJ of Bacillus subtilis, and related proteins from a number of species within a larger family of phosphatases in the PHP hydrolase family. HisJ catalyzes the penultimate step of histidine biosynthesis but shows no homology to the functionally equivalent sequence in E. coli, a domain of the bifunctional HisB protein. Note, however, that many species have two members and that Clostridium perfringens, predicted not to make histidine, has five members of this family; this family is designated subfamily rather than equivalog to indicate that members may not all act as HisJ.

>PRK08123 histidinol-phosphatase; Reviewed

Probab=96.60  E-value=0.0038  Score=51.64  Aligned_cols=71  Identities=17%  Similarity=0.101  Sum_probs=46.6

Q ss_pred             HHHHHHHhcCC---eEEecCCCC---c----C---------ChHHHHHHHHHcCCCEEEEecCCCC--------c-----
Q 046751           63 VVVELIHRTSG---LAVLAHPWA---L----K---------NPAAIIRKLKDVGLHRLEVYRSDGK--------L-----  110 (155)
Q Consensus        63 e~I~~I~~aGG---v~VlAHP~~---~----~---------~~~~~l~~l~~~GldGIEv~~~~~~--------~-----  110 (155)
                      ...+++....+   +-|+|||..   +    .         ..+++++.+++.| -+||+-.++.+        |     
T Consensus       157 ~~~~~~~~~~~~~~~dvlgH~Dli~r~~~~~~~~~~~~~~~~~~~il~~~~~~g-~~lEINtsgl~~~~~~~~yP~~~il  235 (270)
T PRK08123        157 TVLQSIEADLGPYKPKRIGHITLVRKFQKLFPPDFDEKNKELIEDILALIKKRG-YELDFNTAGLRKPYCGEPYPPGEII  235 (270)
T ss_pred             HHHHHHHhcccccCCCEeecchHHHHhCccCCcccCHHHHHHHHHHHHHHHHcC-CEEEEEchhhcCCCCCCCCCcHHHH
Confidence            34444444322   569999961   1    1         0134566666665 58998875322        1     


Q ss_pred             ---ccccceeeecCCCCCCCcccceee
Q 046751          111 ---VGVIFTLQDGSHYESKKEIESIVL  134 (155)
Q Consensus       111 ---~~~~L~~tgGSD~H~~~~~~~~~~  134 (155)
                         .++|.++|-|||+|.+.++|.++-
T Consensus       236 ~~~~e~g~~itlgSDAH~~~~vg~~f~  262 (270)
T PRK08123        236 TLAKKLGIPLVYGSDAHSAADVGRGYD  262 (270)
T ss_pred             HHHHHcCCCEEEeCCCCCHHHHHhhHH
Confidence               377999999999999999998654

>PRK05588 histidinol-phosphatase; Provisional

Probab=96.16  E-value=0.0077  Score=49.17  Aligned_cols=70  Identities=13%  Similarity=0.058  Sum_probs=46.5

Q ss_pred             HHHHHHHhcCCeEEecCCCCcC-------------Ch----HHHHHHHHHcCCCEEEEecCCCCc--------------c
Q 046751           63 VVVELIHRTSGLAVLAHPWALK-------------NP----AAIIRKLKDVGLHRLEVYRSDGKL--------------V  111 (155)
Q Consensus        63 e~I~~I~~aGGv~VlAHP~~~~-------------~~----~~~l~~l~~~GldGIEv~~~~~~~--------------~  111 (155)
                      ..++++...+-+-|+|||....             ..    .++++.+++.| -++|+-.++...              .
T Consensus       128 ~~~~~v~~~~~~dvlgH~Dl~~r~~~~~~~~~~~~~~~~~~~~il~~~~~~g-~~lEINt~~l~~~~~~~~~~~~l~~~~  206 (255)
T PRK05588        128 NMLKCLEKYDFIDSLGHIDYISRYAKYEDKEIYYDEFKEIIDEILKVLIEKE-KVLEINTRRLDDKRSVENLVKIYKRFY  206 (255)
T ss_pred             HHHHHHHhcCCCCCccCHhHHHHcCccccccccHHHHHHHHHHHHHHHHHcC-CEEEEECcccCCCCCCCCHHHHHHHHH
Confidence            4556666677799999996321             01    34455555555 588987754321              2


Q ss_pred             cccce-eeecCCCCCCCccccee
Q 046751          112 GVIFT-LQDGSHYESKKEIESIV  133 (155)
Q Consensus       112 ~~~L~-~tgGSD~H~~~~~~~~~  133 (155)
                      +.|.. +|-|||+|.+.+++.++
T Consensus       207 ~~g~~~i~lgSDAH~~~~vg~~~  229 (255)
T PRK05588        207 ELGGKYITLGSDAHNIEDIGNNF  229 (255)
T ss_pred             HcCCcEEEEECCCCCHHHHHhhH
Confidence            45555 79999999999998754

>PRK07945 hypothetical protein; Provisional

Probab=96.10  E-value=0.016  Score=49.77  Aligned_cols=67  Identities=9%  Similarity=0.126  Sum_probs=46.7

Q ss_pred             HHHHHHHhcCCeEEecCCCC---c------C----ChHHHHHHHHHcCCCEEEEecCCCCc----------ccccceeee
Q 046751           63 VVVELIHRTSGLAVLAHPWA---L------K----NPAAIIRKLKDVGLHRLEVYRSDGKL----------VGVIFTLQD  119 (155)
Q Consensus        63 e~I~~I~~aGGv~VlAHP~~---~------~----~~~~~l~~l~~~GldGIEv~~~~~~~----------~~~~L~~tg  119 (155)
                      ..++++. .+.+-|+|||..   +      .    ...++++.+++.| -+||+-.+..+.          .++|..+|-
T Consensus       212 ~l~~ai~-~~~~dvlgH~D~~~~~~~~~~~~~~~~~~~~i~~a~~e~g-~~lEINt~~~r~~P~~~il~~a~e~G~~vti  289 (335)
T PRK07945        212 RMLAAVA-NPHTDVLGHCTGRLVTGNRGTRPESKFDAEAVFAACREHG-TAVEINSRPERRDPPTRLLRLALDAGCLFSI  289 (335)
T ss_pred             HHHHHhc-CCCCeEEecCchhhhccccCCCChhhcCHHHHHHHHHHhC-CEEEEeCCCCCCCChHHHHHHHHHcCCeEEe
Confidence            3444554 677999999941   1      0    1245666666665 589998765432          478999999


Q ss_pred             cCCCCCCCcccc
Q 046751          120 GSHYESKKEIES  131 (155)
Q Consensus       120 GSD~H~~~~~~~  131 (155)
                      |||+|.+.+++.
T Consensus       290 gSDAH~p~~v~~  301 (335)
T PRK07945        290 DTDAHAPGQLDW  301 (335)
T ss_pred             cCCCCChhhcch
Confidence            999999998864

>PRK06361 hypothetical protein; Provisional

Probab=96.09  E-value=0.0094  Score=47.15  Aligned_cols=62  Identities=15%  Similarity=0.115  Sum_probs=44.4

Q ss_pred             HHHHHhcCCeEEecCCCCcCChHHHHHHHHHcCCCEEEEecCCCCc----------ccccceeeecCCCCCCCccc
Q 046751           65 VELIHRTSGLAVLAHPWALKNPAAIIRKLKDVGLHRLEVYRSDGKL----------VGVIFTLQDGSHYESKKEIE  130 (155)
Q Consensus        65 I~~I~~aGGv~VlAHP~~~~~~~~~l~~l~~~GldGIEv~~~~~~~----------~~~~L~~tgGSD~H~~~~~~  130 (155)
                      ++++ +.|-+-|+|||....  .+.++.+++ .--.||+..+....          +++|+.+|.|||+|.+.+++
T Consensus       106 ~~a~-~~~~~dvlaHpd~~~--~~~~~~~~~-~~~~lEin~~~~~~~~~~~~l~~a~~~gi~vv~~SDaH~~~d~~  177 (212)
T PRK06361        106 LAAI-ECEDVDILAHPGLIT--EEEAELAAE-NGVFLEITARKGHSLTNGHVARIAREAGAPLVINTDTHAPSDLI  177 (212)
T ss_pred             HHHH-hCCCCcEecCcchhh--HHHHHHHHH-cCeEEEEECCCCcccchHHHHHHHHHhCCcEEEECCCCCHHHHH
Confidence            4444 678899999997543  355555554 46789997643222          37899999999999888876

>PRK06740 histidinol-phosphatase; Validated

Probab=96.03  E-value=0.011  Score=50.75  Aligned_cols=69  Identities=17%  Similarity=0.104  Sum_probs=47.0

Q ss_pred             HHHHHHHhcCCeEEecCCCCcC-------------ChHHHHHHHHHcCCCEEEEecCC-CC-------c--------ccc
Q 046751           63 VVVELIHRTSGLAVLAHPWALK-------------NPAAIIRKLKDVGLHRLEVYRSD-GK-------L--------VGV  113 (155)
Q Consensus        63 e~I~~I~~aGGv~VlAHP~~~~-------------~~~~~l~~l~~~GldGIEv~~~~-~~-------~--------~~~  113 (155)
                      ..++++ +.|-+-|+|||...+             ...++++.+++.| -++|+-.+. .+       +        .++
T Consensus       206 ~~~~~i-~~~~fdvIgHpDlik~f~~~~~~~~~~~~~~~I~~a~~~~g-~~lEINt~~~~r~~~~e~yP~~~il~~~~e~  283 (331)
T PRK06740        206 TVECAI-RSELFDIIAHLDNIKVFNYRLDENEQLSYYKEIARALVETN-TATEINAGLYYRYPVREMCPSPLFLQVLAKH  283 (331)
T ss_pred             HHHHHH-HcCCCCEeeCccHHHhcCCCcchhhhHHHHHHHHHHHHHcC-CEEEEECccccCCCCCCCCcCHHHHHHHHHC
Confidence            345555 578999999996221             0123444444544 588988752 21       1        378


Q ss_pred             cceeeecCCCCCCCccccee
Q 046751          114 IFTLQDGSHYESKKEIESIV  133 (155)
Q Consensus       114 ~L~~tgGSD~H~~~~~~~~~  133 (155)
                      |..+|-|||+|.+.++|..+
T Consensus       284 Gv~~tlgSDAH~p~~VG~~~  303 (331)
T PRK06740        284 EVPITLSSDAHYPNDLGKYV  303 (331)
T ss_pred             CCeEEEeeCCCCHHHHHhHH
Confidence            99999999999999999865

>PRK08609 hypothetical protein; Provisional

Probab=95.49  E-value=0.036  Score=50.82  Aligned_cols=71  Identities=14%  Similarity=0.184  Sum_probs=47.8

Q ss_pred             HHhcCCeEEecCCCC-----cCC----hHHHHHHHHHcCCCEEEEecCCCCc----------ccccceeeecCCCCCCCc
Q 046751           68 IHRTSGLAVLAHPWA-----LKN----PAAIIRKLKDVGLHRLEVYRSDGKL----------VGVIFTLQDGSHYESKKE  128 (155)
Q Consensus        68 I~~aGGv~VlAHP~~-----~~~----~~~~l~~l~~~GldGIEv~~~~~~~----------~~~~L~~tgGSD~H~~~~  128 (155)
                      +-+.|.+.|+|||.+     +..    .+++++.+++.| -.+|+-.+..+.          .++|..+|-|||+|.+.+
T Consensus       454 a~~~~~~dILaHpd~rli~~~~~~~~d~~~i~~~a~~~G-~~lEINa~~~r~~~~~~~~~~~~e~Gv~i~igSDAH~~~~  532 (570)
T PRK08609        454 ACRNPYVRLIAHPTGRLIGRRDGYDVNIDQLIELAKETN-TALELNANPNRLDLSAEHLKKAQEAGVKLAINTDAHHTEM  532 (570)
T ss_pred             HhcCCCceEEECCCccccccCCCchHHHHHHHHHHHHhC-CEEEEcCCccccCccHHHHHHHHHcCCEEEEECCCCChhh
Confidence            345789999999983     111    134444445554 689988764331          378999999999999998


Q ss_pred             ccceeeEeeehhhhh
Q 046751          129 IESIVLEILCSIIYL  143 (155)
Q Consensus       129 ~~~~~~~~~~~~~~~  143 (155)
                      ++    -++.++..+
T Consensus       533 l~----~~~~~v~~a  543 (570)
T PRK08609        533 LD----DMKYGVATA  543 (570)
T ss_pred             hC----cHHHHHHHH
Confidence            84    355555433

>PRK07329 hypothetical protein; Provisional

Probab=95.41  E-value=0.015  Score=47.45  Aligned_cols=71  Identities=20%  Similarity=0.054  Sum_probs=47.6

Q ss_pred             HHHHHHHHhcCCeEEecCCCCc-C-------C-------hHHHHHHHHHcCCCEEEEecCCCCc--------------cc
Q 046751           62 QVVVELIHRTSGLAVLAHPWAL-K-------N-------PAAIIRKLKDVGLHRLEVYRSDGKL--------------VG  112 (155)
Q Consensus        62 ~e~I~~I~~aGGv~VlAHP~~~-~-------~-------~~~~l~~l~~~GldGIEv~~~~~~~--------------~~  112 (155)
                      +..++++...|=+-|+|||... +       .       .+++++.+++.| -.+|+-.+....              .+
T Consensus       128 ~~~~~~v~~~~~fdvlgHpDl~~r~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~lEiNt~~~~~~~~~~~~~~~l~~~~~  206 (246)
T PRK07329        128 EKMEEAIGRVHDADVLAHFDYGLRLFDLTVEELKAFEPQLTRIFAKMIDND-LAFELNTKSMYLYGNEGLYRYAIELYKQ  206 (246)
T ss_pred             HHHHHHHHccCCCCEeeeccHHHHhCCCCCcChHHHHHHHHHHHHHHHHcC-CeEEEECcccccCCCCcchHHHHHHHHH
Confidence            4456666666689999999731 0       1       024455555654 588988764321              26


Q ss_pred             ccc-eeeecCCCCCCCccccee
Q 046751          113 VIF-TLQDGSHYESKKEIESIV  133 (155)
Q Consensus       113 ~~L-~~tgGSD~H~~~~~~~~~  133 (155)
                      +|. .+|-|||+|.+.+++.++
T Consensus       207 ~g~~~i~~gSDAH~~~~vg~~~  228 (246)
T PRK07329        207 LGGKLFSIGSDAHKLEHYRYNF  228 (246)
T ss_pred             cCCeEEEecCCCCCHHHHHHHH
Confidence            775 489999999999998754

>PRK00912 ribonuclease P protein component 3; Provisional

Probab=94.89  E-value=0.063  Score=43.43  Aligned_cols=69  Identities=14%  Similarity=0.106  Sum_probs=48.1

Q ss_pred             HHHHHHHHHhcCCeEEecCCCCcC----ChHHHHHHHHHcCCCEEEEecCCC-------C-------c------ccccce
Q 046751           61 PQVVVELIHRTSGLAVLAHPWALK----NPAAIIRKLKDVGLHRLEVYRSDG-------K-------L------VGVIFT  116 (155)
Q Consensus        61 ~~e~I~~I~~aGGv~VlAHP~~~~----~~~~~l~~l~~~GldGIEv~~~~~-------~-------~------~~~~L~  116 (155)
                      .+.+.+.+.+.+++-|++||+...    .....++..++.| -++|+-++.-       +       .      +++|.+
T Consensus        91 ~~~~~~~a~~~~~vdIi~hp~~~~~~~~~~~~~~~~a~~~g-v~lEIn~s~~~~~~~~~r~~~~~~~~~~~~~~~~~g~p  169 (237)
T PRK00912         91 DEKVNRAACENPRVDILSHPYTKRKDSGINHVLAKEAARNN-VAIEFNLRDILKSRGGRRARTLSNFRDNLALARKYDFP  169 (237)
T ss_pred             CHHHHHHHHccCCCcEEeCccccCCCCCcCHHHHHHHHHCC-eEEEEEchHhhhhcccHHHHHHHHHHHHHHHHHhcCCC
Confidence            344446788899999999998521    1234555555554 4778766521       0       0      378999


Q ss_pred             eeecCCCCCCCccc
Q 046751          117 LQDGSHYESKKEIE  130 (155)
Q Consensus       117 ~tgGSD~H~~~~~~  130 (155)
                      ++.|||+|.+.+++
T Consensus       170 iiisSdAh~~~~l~  183 (237)
T PRK00912        170 LVLTSGAMSCYDLR  183 (237)
T ss_pred             EEEeCCCCcccccC
Confidence            99999999999885

>COG1379 PHP family phosphoesterase with a Zn ribbon [General function prediction only]

Probab=93.62  E-value=0.045  Score=47.46  Aligned_cols=79  Identities=14%  Similarity=0.045  Sum_probs=57.0

Q ss_pred             CCHHHHHHHHHhcCCeEEecCCCCcC----ChHHHHHHHH-HcCCCEEEEecCCCCc------ccccceeeecCCCCC--
Q 046751           59 HTPQVVVELIHRTSGLAVLAHPWALK----NPAAIIRKLK-DVGLHRLEVYRSDGKL------VGVIFTLQDGSHYES--  125 (155)
Q Consensus        59 ~~~~e~I~~I~~aGGv~VlAHP~~~~----~~~~~l~~l~-~~GldGIEv~~~~~~~------~~~~L~~tgGSD~H~--  125 (155)
                      ++-.+..+++++.||+...||-|...    ...+-+.+.- ..-+|.||.==|..+.      +-+.++....||+|+  
T Consensus       119 ~tg~el~e~v~dlggL~gPaHaFtPwtslYk~~dSl~e~yg~a~iDfvELGLSADtdmAD~I~el~~~pFLtNSDAHSp~  198 (403)
T COG1379         119 LTGAELAEIVKDLGGLIGPAHAFTPWTSLYKKYDSLKECYGDAMIDFVELGLSADTDMADMIEELHRLPFLTNSDAHSPY  198 (403)
T ss_pred             ccHHHHHHHHHHcccceecccccCccHHhhhhhchHHHHhCccchhHHHhccccCchHHHHHHHhccCCcccccccCCCc
Confidence            78889999999999999999966421    0112223322 2336777765555553      456788888999999  


Q ss_pred             CCcccceeeEee
Q 046751          126 KKEIESIVLEIL  137 (155)
Q Consensus       126 ~~~~~~~~~~~~  137 (155)
                      ++++|+-+.+|+
T Consensus       199 phrLgREfn~f~  210 (403)
T COG1379         199 PHRLGREFNQFE  210 (403)
T ss_pred             hhhhhhhhheee
Confidence            889999999993

>COG1387 HIS2 Histidinol phosphatase and related hydrolases of the PHP family [Amino acid transport and metabolism / General function prediction only]

Probab=89.61  E-value=1.2  Score=36.35  Aligned_cols=73  Identities=15%  Similarity=0.174  Sum_probs=50.4

Q ss_pred             HHHHHHHHHhcCCeEEecCCCCcC-----------ChHHHHHHHHHcCCCEEEEecCCCCc----------ccccceeee
Q 046751           61 PQVVVELIHRTSGLAVLAHPWALK-----------NPAAIIRKLKDVGLHRLEVYRSDGKL----------VGVIFTLQD  119 (155)
Q Consensus        61 ~~e~I~~I~~aGGv~VlAHP~~~~-----------~~~~~l~~l~~~GldGIEv~~~~~~~----------~~~~L~~tg  119 (155)
                      ..+.+...-..+-+-|+|||+...           ...+.++-+.+ ---++|.-.+....          +++|..+|=
T Consensus       113 ~~~~~~~a~~~~~v~il~H~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~aleins~~~~~~~~~~~~~~~~e~G~~~~i  191 (237)
T COG1387         113 YTERLIAAMSNGAVDILAHPGGRLLGRIDRGAYKEDIEELIELAEK-NGKALEINSRPGRLDPNSEILRLARELGVKLAI  191 (237)
T ss_pred             HHHHHHHHHcCCCccEEecCCccccccccccccHHHHHHHHHHHHH-hCcEEeecCCcCccCchHHHHHHHHHhCCeEEe
Confidence            345666667778899999998521           11234443333 45688877663332          478999999


Q ss_pred             cCCCCCCCcccceee
Q 046751          120 GSHYESKKEIESIVL  134 (155)
Q Consensus       120 GSD~H~~~~~~~~~~  134 (155)
                      |||.|.+..+|....
T Consensus       192 ~tDaH~~~~lg~~~~  206 (237)
T COG1387         192 GTDAHRPGDLGDMYF  206 (237)
T ss_pred             ecCcCChhhcccchH
Confidence            999999999987654

>COG4464 CapC Capsular polysaccharide biosynthesis protein [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]

Probab=88.22  E-value=0.81  Score=37.84  Aligned_cols=69  Identities=12%  Similarity=0.062  Sum_probs=46.5

Q ss_pred             CHHHHHHHHHhcCCeEEecCCCCcCC---hHHHHHHHHHcCCCEEEEecCCCCc--------------ccccceeeecCC
Q 046751           60 TPQVVVELIHRTSGLAVLAHPWALKN---PAAIIRKLKDVGLHRLEVYRSDGKL--------------VGVIFTLQDGSH  122 (155)
Q Consensus        60 ~~~e~I~~I~~aGGv~VlAHP~~~~~---~~~~l~~l~~~GldGIEv~~~~~~~--------------~~~~L~~tgGSD  122 (155)
                      ...++.--|...|=+||+|||-|+..   ....+.+|++.|.-  =-.++++-.              -+-||.---+||
T Consensus       117 ya~~lf~elq~kGi~PIIAHPERn~~i~kn~~~lyeLid~ga~--sQvts~Sl~GlfGK~ikK~a~~~iE~~L~hFiASD  194 (254)
T COG4464         117 YADQLFFELQSKGIIPIIAHPERNRAIQKNPYLLYELIDKGAY--SQVTSSSLAGLFGKKIKKFALQLIEANLVHFIASD  194 (254)
T ss_pred             hHHHHHHHHHHCCceeeeechhhHHHHHhChHHHHHHHhcccc--eeechHhHHhhhhHHHHHHHHHHHHcccceeeecc
Confidence            45667777889999999999998642   24678888876621  011111111              166899899999


Q ss_pred             CCCCCccc
Q 046751          123 YESKKEIE  130 (155)
Q Consensus       123 ~H~~~~~~  130 (155)
                      +|....--
T Consensus       195 AHn~~~R~  202 (254)
T COG4464         195 AHNVDKRP  202 (254)
T ss_pred             ccccCCCC
Confidence            99977543

>COG0613 Predicted metal-dependent phosphoesterases (PHP family) [General function prediction only]

Probab=84.16  E-value=0.31  Score=40.40  Aligned_cols=76  Identities=16%  Similarity=0.049  Sum_probs=58.0

Q ss_pred             CCHHHHHHHHHhcCCeEEecCCCCcCC----hHHHHHHHHHcCCCEEEEecCCCCc-----------ccccceeeecCCC
Q 046751           59 HTPQVVVELIHRTSGLAVLAHPWALKN----PAAIIRKLKDVGLHRLEVYRSDGKL-----------VGVIFTLQDGSHY  123 (155)
Q Consensus        59 ~~~~e~I~~I~~aGGv~VlAHP~~~~~----~~~~l~~l~~~GldGIEv~~~~~~~-----------~~~~L~~tgGSD~  123 (155)
                      .+.++.++.|++.++.+...||+....    .....+...  -.+.+|++|++...           .+|+....++||.
T Consensus        98 ~~~~~~~~~i~~~~~~~~~~h~~~~~~~~~~~~~~~~~h~--~~~~ve~~~~~~~~~~fn~~~~~~~~~~~~~~~~~~~~  175 (258)
T COG0613          98 LYREERLEEIKERLGKAIIPHPFEGARKLAGLGAITRAHI--ARDAVEVGNASTRQGVFNKYLKRGAPKYVPPEWADSEA  175 (258)
T ss_pred             ccHHHHHHHHHHhCCccccCcchHHHHhcCCcccchhhhh--hhhhhccccccchHHHHHHHHhccCcccCcccccCHHH
Confidence            789999999999999999999984211    001112222  27899999997664           3778899999999


Q ss_pred             CCCCcccceeeEe
Q 046751          124 ESKKEIESIVLEI  136 (155)
Q Consensus       124 H~~~~~~~~~~~~  136 (155)
                      |-...++..++.+
T Consensus       176 ~i~~~~ga~g~~v  188 (258)
T COG0613         176 HVGAIHGAGGTAV  188 (258)
T ss_pred             HHHHHhhceeEEE
Confidence            9988888888877

>PRK00448 polC DNA polymerase III PolC; Validated

Probab=80.07  E-value=1.5  Score=44.71  Aligned_cols=64  Identities=16%  Similarity=0.076  Sum_probs=42.8

Q ss_pred             cCCCCCHHHHHHHHHh-cCCeEEecCCCCcCCh--HHHHH-----HHHHcCCCEEEEecCCCCc----------ccccce
Q 046751           55 MGDMHTPQVVVELIHR-TSGLAVLAHPWALKNP--AAIIR-----KLKDVGLHRLEVYRSDGKL----------VGVIFT  116 (155)
Q Consensus        55 l~~g~~~~e~I~~I~~-aGGv~VlAHP~~~~~~--~~~l~-----~l~~~GldGIEv~~~~~~~----------~~~~L~  116 (155)
                      +..+++++++++.+++ .||.+++|||..++..  ...+.     .+...++|++|+.+..+..          +.+|+.
T Consensus       480 L~~aps~~EaL~~f~~figg~vLVAHNa~FD~~fL~~~l~rlgl~~l~~~~IDTLelar~l~p~~k~~kL~~LAk~lGL~  559 (1437)
T PRK00448        480 VKDAPSIEEVLPKFKEFCGDSILVAHNASFDVGFINTNYEKLGLEKIKNPVIDTLELSRFLYPELKSHRLNTLAKKFGVE  559 (1437)
T ss_pred             HcCCCCHHHHHHHHHHHhCCCEEEEeCccccHHHHHHHHHHcCCccccccceeHHHHHHHHcCccccccHHHHHHHcCCC
Confidence            3444899999999999 8999999999865421  11111     2233567899988765532          356776


Q ss_pred             ee
Q 046751          117 LQ  118 (155)
Q Consensus       117 ~t  118 (155)
                      .+
T Consensus       560 ~~  561 (1437)
T PRK00448        560 LE  561 (1437)
T ss_pred             CC
Confidence            64

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	155
2yb1_A	292	Amidohydrolase; HET: AMP; 1.90A {Chromobacterium v	2e-25
3o0f_A	301	Putative metal-dependent phosphoesterase; structur	6e-22

>2yb1_A Amidohydrolase; HET: AMP; 1.90A {Chromobacterium violaceum} PDB: 2yb4_A Length = 292

 Score = 97.4 bits (243), Expect = 2e-25
 Identities = 23/118 (19%), Positives = 41/118 (34%), Gaps = 11/118 (9%)

Query: 1   MILKLNKLKLPLKWENVAKIAGKGVAPGRLHVARAMVEAGHVENLKHAFADISMMG---- 56
           M   L    +   ++   +         R H AR +V++G V++++  F      G    
Sbjct: 106 MGASLEAAGIAGCFDGAMRWCDNPEMISRTHFARHLVDSGAVKDMRTVFRKYLTPGKPGY 165

Query: 57  ---DMHTPQVVVELIHRTSGLAVLAHPWALKNPA----AIIRKLKDVGLHRLEVYRSD 107
                 + +  V  I    G+AV+AHP            +I   +  G   +EV    
Sbjct: 166 VSHQWASLEDAVGWIVGAGGMAVIAHPGRYDMGRTLIERLILDFQAAGGQGIEVASGS 223

>3o0f_A Putative metal-dependent phosphoesterase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: AMP; 1.94A {Bifidobacterium adolescentis} PDB: 3e0f_A* Length = 301

 Score = 88.1 bits (219), Expect = 6e-22
 Identities = 29/121 (23%), Positives = 47/121 (38%), Gaps = 15/121 (12%)

Query: 1   MILKLNKLKLPLKWENVAKIA--GKGVAPGRLHVARAMVEAGHVENLKHAFADISMMG-- 56
           M+ +L++   P+ W++V      G+    GR H+A A+V AG  E    AFAD       
Sbjct: 117 MVERLSQD-FPITWDDVLAQVKEGERTTIGRPHIADALVAAGVYETRSDAFADAVSAKSK 175

Query: 57  -----DMHTPQVVVELIHRTSGLAVLAHPWALKN-----PAAIIRKLKDVGLHRLEVYRS 106
                   +   V+  +    G+ V AH    +          +  +   GL  LEV+  
Sbjct: 176 YYIPTPSPSTHEVIAAVKGAGGVVVAAHAGDPQRNRRLLSDEQLDAMIADGLDGLEVWHR 235

Query: 107 D 107
            
Sbjct: 236 G 236

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	155
3o0f_A	301	Putative metal-dependent phosphoesterase; structur	100.0
2yb1_A	292	Amidohydrolase; HET: AMP; 1.90A {Chromobacterium v	99.95
3e38_A	343	Two-domain protein containing predicted PHP-like d	99.22
1m65_A	245	Hypothetical protein YCDX; structural genomics, be	99.07
2wje_A	247	CPS4B, tyrosine-protein phosphatase CPSB; capsule	99.03
2anu_A	255	Hypothetical protein TM0559; predicted metal-depen	98.87
2yxo_A	267	Histidinol phosphatase; metal-dependent, hydrolase	98.85
3qy7_A	262	Tyrosine-protein phosphatase YWQE; TIM barrel, pol	98.81
2w9m_A	578	Polymerase X; SAXS, DNA repair, DNA polymerase, DN	97.91
3b0x_A	575	DNA polymerase beta family (X family); structural	97.13
3dcp_A	283	Histidinol-phosphatase; HISK, histidine biosynthes	95.28
1v77_A	212	PH1877P, hypothetical protein PH1877; RNAse P prot	91.57

>3o0f_A Putative metal-dependent phosphoesterase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: AMP; 1.94A {Bifidobacterium adolescentis} PDB: 3e0f_A*

Probab=100.00  E-value=4.1e-33  Score=233.39  Aligned_cols=125  Identities=26%  Similarity=0.410  Sum_probs=111.7

Q ss_pred             ChHHHHhCCCCCCHHHHHHHhCCC--CCCCHHHHHHHHHHcCCCCCHHHHHHHHHhcCCC---------CCHHHHHHHHH
Q 046751            1 MILKLNKLKLPLKWENVAKIAGKG--VAPGRLHVARAMVEAGHVENLKHAFADISMMGDM---------HTPQVVVELIH   69 (155)
Q Consensus         1 ii~~L~~~G~~I~~e~v~~~a~~~--~~i~r~Hia~~Lv~~g~~~~~~~af~~~~~l~~g---------~~~~e~I~~I~   69 (155)
                      |+++|++. ++|+||++.+.++++  .++||||||++|+++||+++++++|++|  |++|         ++++|+|++|+
T Consensus       117 i~~~L~~~-~~i~~e~v~~~a~~~~~~~igR~HiA~~Lv~~G~~~~~~~aF~~~--l~~g~~~yV~~~~~~~~eaI~~I~  193 (301)
T 3o0f_A          117 MVERLSQD-FPITWDDVLAQVKEGERTTIGRPHIADALVAAGVYETRSDAFADA--VSAKSKYYIPTPSPSTHEVIAAVK  193 (301)
T ss_dssp             HHHHHHHH-SSCCHHHHHTTCTTGGGSCCCHHHHHHHHHHTTSCSSHHHHHTTT--TSTTSTTCCCCCCCBHHHHHHHHH
T ss_pred             HHHHHHHH-CCCCHHHHHHHhcCCCCCCcCHHHHHHHHHHcCCCCCHHHHHHHH--HcCCCccccCccCCCHHHHHHHHH
Confidence            57899999 999999998876432  3699999999999999999999999999  9988         79999999999


Q ss_pred             hcCCeEEecCCCCcC-----ChHHHHHHHHHcCCCEEEEecCCCCc----------ccccceeeecCCCCCCCc
Q 046751           70 RTSGLAVLAHPWALK-----NPAAIIRKLKDVGLHRLEVYRSDGKL----------VGVIFTLQDGSHYESKKE  128 (155)
Q Consensus        70 ~aGGv~VlAHP~~~~-----~~~~~l~~l~~~GldGIEv~~~~~~~----------~~~~L~~tgGSD~H~~~~  128 (155)
                      ++||++|||||+++.     ...+++.+|++.|+|||||+|++|++          .++||++|||||||++..
T Consensus       194 ~aGGvaVLAHP~r~~~~r~~~~~~~l~~l~~~GldgIEv~~~~~~~~~~~~~~~lA~~~gL~~tgGSD~Hg~~~  267 (301)
T 3o0f_A          194 GAGGVVVAAHAGDPQRNRRLLSDEQLDAMIADGLDGLEVWHRGNPPEQRERLLTIAARHDLLVTGGSDWHGKGK  267 (301)
T ss_dssp             HTTCEEEECSTTCTTTCSSCCCHHHHHHHHHHTCCEEEEESTTSCHHHHHHHHHHHHHHTCEEEECCCBCGGGS
T ss_pred             HCCCEEEecChhhhccccccCcHHHHHHHHHCCCCEEEEeCCCCCHHHHHHHHHHHHHcCCceEEEcCCCCCCC
Confidence            999999999997642     24678999999999999999999986          379999999999999753

>2yb1_A Amidohydrolase; HET: AMP; 1.90A {Chromobacterium violaceum} PDB: 2yb4_A

Probab=99.95  E-value=9e-28  Score=198.46  Aligned_cols=130  Identities=18%  Similarity=0.245  Sum_probs=113.9

Q ss_pred             hHHHHhCCCCCCHHHHHHHhCCCCCCCHHHHHHHHHHcCCCCCHHHHHHHHHhcCCC---------CCHHHHHHHHHhcC
Q 046751            2 ILKLNKLKLPLKWENVAKIAGKGVAPGRLHVARAMVEAGHVENLKHAFADISMMGDM---------HTPQVVVELIHRTS   72 (155)
Q Consensus         2 i~~L~~~G~~I~~e~v~~~a~~~~~i~r~Hia~~Lv~~g~~~~~~~af~~~~~l~~g---------~~~~e~I~~I~~aG   72 (155)
                      +++|++.|++++++++.+.+.++..+||||||++|+++|++++..++|++|  |++|         ++++++|++|+++|
T Consensus       107 ~~~l~~~g~~~~~~~v~~~a~~~~~igr~H~a~~lv~~g~~~~~~~~f~~y--l~~~~~~~v~~~~~~~~~~i~~i~~~G  184 (292)
T 2yb1_A          107 GASLEAAGIAGCFDGAMRWCDNPEMISRTHFARHLVDSGAVKDMRTVFRKY--LTPGKPGYVSHQWASLEDAVGWIVGAG  184 (292)
T ss_dssp             HHHHHHTTCTTHHHHHHTTCSSGGGCCHHHHHHHHHHTTSSSSHHHHHHHS--SSTTSTTCCCCCCBCHHHHHHHHHHTT
T ss_pred             HHHHHHcCCCcCHHHHHHhccCCCCcCHHHHHHHHHHcCCcCCHHHHHHHH--HccCCceeccCCCCCHHHHHHHHHHcC
Confidence            567888999999999987765444789999999999999999999999999  9866         68999999999999


Q ss_pred             CeEEecCCCCcCC----hHHHHHHHHHcCCCEEEEecCCCCc----------ccccceeeecCCCCCCC----ccccee
Q 046751           73 GLAVLAHPWALKN----PAAIIRKLKDVGLHRLEVYRSDGKL----------VGVIFTLQDGSHYESKK----EIESIV  133 (155)
Q Consensus        73 Gv~VlAHP~~~~~----~~~~l~~l~~~GldGIEv~~~~~~~----------~~~~L~~tgGSD~H~~~----~~~~~~  133 (155)
                      |++|+|||+++..    ..++++++++.|++||||+++.++.          .++|+++|+|||||++.    .+|+..
T Consensus       185 g~~VlAHP~r~~~~~~~~~~~l~~l~~~g~~giEv~~~~~~~~~~~~~~~~a~~~gl~~t~GSDaH~~~~~~~~lG~~~  263 (292)
T 2yb1_A          185 GMAVIAHPGRYDMGRTLIERLILDFQAAGGQGIEVASGSHSLDDMHKFALHADRHGLYASSGSDFHAPGEGGRDVGHTE  263 (292)
T ss_dssp             CEEEECCGGGSSCCHHHHHHHHHHHHHTTCCEEEEEETTCCHHHHHHHHHHHHHHTCEEEEECCBCSTTC---CTTCCC
T ss_pred             CEEEEECcCccccchhhHHHHHHHHHhCCCCEEEEeCCCCCHHHHHHHHHHHHHcCCceEEeeCCCCcCCCCCcCCCCC
Confidence            9999999997652    2467888889999999999999984          37999999999999999    777653

>3e38_A Two-domain protein containing predicted PHP-like dependent phosphoesterase; structural genomics; 2.20A {Bacteroides vulgatus atcc 8482}

Probab=99.22  E-value=2.8e-11  Score=102.56  Aligned_cols=80  Identities=13%  Similarity=0.052  Sum_probs=64.1

Q ss_pred             CCHHHHHHHHHhcCCeEEecCCCCcCC-h-----HHHHHHHH-HcCCCEEEEecCCC-Cc------ccccceeeecCCCC
Q 046751           59 HTPQVVVELIHRTSGLAVLAHPWALKN-P-----AAIIRKLK-DVGLHRLEVYRSDG-KL------VGVIFTLQDGSHYE  124 (155)
Q Consensus        59 ~~~~e~I~~I~~aGGv~VlAHP~~~~~-~-----~~~l~~l~-~~GldGIEv~~~~~-~~------~~~~L~~tgGSD~H  124 (155)
                      .+++++++.+++.||++|+|||++... .     ...++++. ..++|||||||+.. +.      +.++|.++||||+|
T Consensus       117 ~~~~eli~~v~~~Ggl~iiAHP~r~~~~~~g~~~~~~~~e~l~~~~iDaIEv~N~~~~n~~A~~la~~~~l~~~~GSDaH  196 (343)
T 3e38_A          117 KDYKDAFREAKKQGAFMFWNHPGWDSQQPDTTKWWPEHTALYQEGCMHGIEVANGHLYMPEAIQWCLDKNLTMIGTSDIH  196 (343)
T ss_dssp             SSHHHHHHHHHHTTCEEEECCTTCTTTSSSCCCCCHHHHHHHHTTCCSEEEEEETTEECTHHHHHHHHHTCEEEEECCBC
T ss_pred             cCHHHHHHHHHHCCCEEEEeCCCCcccCccccccccchHHHhcccCccEEEEcCCCCccHHHHHHHhhCCCceEeECCCC
Confidence            678999999999999999999997431 0     01134444 36899999999974 22      47899999999999


Q ss_pred             CC--------CcccceeeEeee
Q 046751          125 SK--------KEIESIVLEILC  138 (155)
Q Consensus       125 ~~--------~~~~~~~~~~~~  138 (155)
                      .+        ..+|+.+|.|.+
T Consensus       197 ~~~~~~y~~~~~iGr~~T~v~~  218 (343)
T 3e38_A          197 QPIQTDYDFEKGEHRTMTFVFA  218 (343)
T ss_dssp             SCHHHHCCGGGTCCCCEEEEEE
T ss_pred             CCcccccccccccccceEEEec
Confidence            99        578999999965

>1m65_A Hypothetical protein YCDX; structural genomics, beta-alpha-barrel, metallo-enzyme, STRU function project, S2F, unknown function; 1.57A {Escherichia coli} SCOP: c.6.3.1 PDB: 1m68_A 1pb0_A

Probab=99.07  E-value=1.9e-10  Score=90.60  Aligned_cols=69  Identities=16%  Similarity=0.100  Sum_probs=56.4

Q ss_pred             CHHHHHHHHHhcCCeEEecCCCCcC---ChHHHHHHHHHcCCCEEEEecCCCC--------c--------ccccceeeec
Q 046751           60 TPQVVVELIHRTSGLAVLAHPWALK---NPAAIIRKLKDVGLHRLEVYRSDGK--------L--------VGVIFTLQDG  120 (155)
Q Consensus        60 ~~~e~I~~I~~aGGv~VlAHP~~~~---~~~~~l~~l~~~GldGIEv~~~~~~--------~--------~~~~L~~tgG  120 (155)
                      .++++++.++ +||++|+|||.++.   ...++++.+++.| ++||+++++..        +        .++|+.+|+|
T Consensus       113 ~~~~~~~~i~-~g~~~vlaHp~~~~~~~~~~~~~~~~~~~g-~~iEvn~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~g  190 (245)
T 1m65_A          113 NTQAMIATIA-SGNVHIISHPGNPKYEIDVKAVAEAAAKHQ-VALEINNSSFLHSRKGSEDNCREVAAAVRDAGGWVALG  190 (245)
T ss_dssp             HHHHHHHHHH-TSCCSEECCTTCTTSCCCHHHHHHHHHHHT-CEEEEETTC----------CHHHHHHHHHHHTCCEEEE
T ss_pred             HHHHHHHHHh-CCCCCEEECCCCccchhHHHHHHHHHHHcC-CEEEEECCCCcccCCCCCCchHHHHHHHHHcCCEEEEE
Confidence            4577888888 99999999998743   2356788899999 79999999873        1        3789999999


Q ss_pred             CCCCCCCccc
Q 046751          121 SHYESKKEIE  130 (155)
Q Consensus       121 SD~H~~~~~~  130 (155)
                      ||+|++.+++
T Consensus       191 SDaH~~~~~g  200 (245)
T 1m65_A          191 SDSHTAFTMG  200 (245)
T ss_dssp             CCBSSGGGTT
T ss_pred             CCCCChHHHh
Confidence            9999998887

>2wje_A CPS4B, tyrosine-protein phosphatase CPSB; capsule biogenesis/degradation, manganese, hydrolase, exopolysaccharide synthesis; 1.90A {Streptococcus pneumoniae} PDB: 2wjd_A 2wjf_A 3qy8_A

Probab=99.03  E-value=1.5e-10  Score=92.56  Aligned_cols=74  Identities=15%  Similarity=0.012  Sum_probs=60.9

Q ss_pred             CHHHHHHHHHhcCCeEEecCCCCcCC---hHHHHHHHHHcCCCEEEEecCCC--C-------c---------ccccceee
Q 046751           60 TPQVVVELIHRTSGLAVLAHPWALKN---PAAIIRKLKDVGLHRLEVYRSDG--K-------L---------VGVIFTLQ  118 (155)
Q Consensus        60 ~~~e~I~~I~~aGGv~VlAHP~~~~~---~~~~l~~l~~~GldGIEv~~~~~--~-------~---------~~~~L~~t  118 (155)
                      .+.+++..++++|+++|+|||.++..   ..+.+..+++.|+. +|+.+++.  +       +         .++|+++|
T Consensus       121 ~~~~~i~~i~~~g~~~vlaHp~r~~~~~~~~~~l~~l~~~G~~-lEiN~~s~~~~~~~g~~~~~~~~~~~~~~~~gl~~~  199 (247)
T 2wje_A          121 DIHSALSKILMLGITPVIAHIERYDALENNEKRVRELIDMGCY-TQVNSSHVLKPKLFGERYKFMKKRAQYFLEQDLVHV  199 (247)
T ss_dssp             HHHHHHHHHHTTTCEEEETTGGGCGGGTTCHHHHHHHHHTTCE-EEEEHHHHSCCCSSCCSCHHHHHHHHHHHHTTCCSE
T ss_pred             HHHHHHHHHHHCCCcEEEEehhhHHHHhhCHHHHHHHHHCCCE-EEEecHhhHhcCCCCCcChHHHHHHHHHHHCCCeEE
Confidence            36789999999999999999987541   35788999999997 99988765  3       2         27899999


Q ss_pred             ecCCCCCCCcccceee
Q 046751          119 DGSHYESKKEIESIVL  134 (155)
Q Consensus       119 gGSD~H~~~~~~~~~~  134 (155)
                      .|||+|++..++..+.
T Consensus       200 ~GSDaH~~~~~~~~~~  215 (247)
T 2wje_A          200 IASDMHNLDGRPPHMA  215 (247)
T ss_dssp             EECCBCCSSSSCCCHH
T ss_pred             EEeCCCCCcccChhHH
Confidence            9999999988876543

>2anu_A Hypothetical protein TM0559; predicted metal-dependent phosphoesterase (PHP famil structural genomics, joint center for structural genomics; 2.40A {Thermotoga maritima} SCOP: c.6.3.1

Probab=98.87  E-value=1.9e-09  Score=86.51  Aligned_cols=80  Identities=15%  Similarity=0.165  Sum_probs=61.2

Q ss_pred             CCHHHHHHHHHhcCCeEEecCCCCcCChHH-----H---HHHHHHcCCCEEEEecCCCCc---ccccceeeecCCCCCCC
Q 046751           59 HTPQVVVELIHRTSGLAVLAHPWALKNPAA-----I---IRKLKDVGLHRLEVYRSDGKL---VGVIFTLQDGSHYESKK  127 (155)
Q Consensus        59 ~~~~e~I~~I~~aGGv~VlAHP~~~~~~~~-----~---l~~l~~~GldGIEv~~~~~~~---~~~~L~~tgGSD~H~~~  127 (155)
                      ..++++++.+++.|+++|+|||.++.....     .   .+.+. ..+++||++++....   +++++.+|+|||+|.+.
T Consensus       132 ~~~~~~l~~i~~~g~~~ilaHp~~~~~~~~~~~~~~~~~~~~~~-~~~~aiEin~~~~~~~~~~~~g~~~~~gSDAH~~~  210 (255)
T 2anu_A          132 LPVEEIVEKLKEQNALVIAAHPDRKKQDEEHLSWYLWANMERFK-DTFDAWEIANRDDLFNSVGVKKYRYVANSDFHELW  210 (255)
T ss_dssp             SCHHHHHHHHHHTTCEEEECCCCTTC-----CCCHHHHSTTTTT-TTCSEEEEEETTEECHHHHHTTCCEEEECCBCSGG
T ss_pred             CCHHHHHHHHHHCCCeEEEeCCCccccccccccccccchhhhhh-ccCcEEEEcCCCchhhHHHHcCCceEeccCCCCCc
Confidence            478999999999999999999997542111     0   11222 358999999976322   46899999999999999


Q ss_pred             cccceeeEeeeh
Q 046751          128 EIESIVLEILCS  139 (155)
Q Consensus       128 ~~~~~~~~~~~~  139 (155)
                      ++|+..+.+.++
T Consensus       211 ~ig~~~~~~~~~  222 (255)
T 2anu_A          211 HVYSWKTLVKSE  222 (255)
T ss_dssp             GGSSEEEEEEEC
T ss_pred             ccCCceEEEecC
Confidence            999998888654

>2yxo_A Histidinol phosphatase; metal-dependent, hydrolase; 1.60A {Thermus thermophilus} PDB: 2yz5_A 2z4g_A

Probab=98.85  E-value=1.6e-09  Score=86.21  Aligned_cols=73  Identities=18%  Similarity=0.098  Sum_probs=56.5

Q ss_pred             HHHHHHHHHhcCCeEEecCCCCcC---C----------hHHHHHHHHHcCCCEEEEecCCCCc---------------cc
Q 046751           61 PQVVVELIHRTSGLAVLAHPWALK---N----------PAAIIRKLKDVGLHRLEVYRSDGKL---------------VG  112 (155)
Q Consensus        61 ~~e~I~~I~~aGGv~VlAHP~~~~---~----------~~~~l~~l~~~GldGIEv~~~~~~~---------------~~  112 (155)
                      .+++++++++ |+++|+|||.+..   .          ..++++.+++.| .+||+.++..+.               .+
T Consensus       137 ~~~~~~~i~~-g~~~vlaHp~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g-~~iEvn~~~~~~~~~~~~~~~~~~~~~~~  214 (267)
T 2yxo_A          137 FQEVEKAARS-GLFHAIGHLDLPKKFGHRLPEEALLELAEPALRAVAEAG-LFLDVNTAGLRRPAKEVYPAPALLRRARE  214 (267)
T ss_dssp             HHHHHHHHTS-SCCSEESCTTGGGTTSCCCCHHHHHHHHHHHHHHHHHHT-CEEEEEGGGGGSTTCSCBSCHHHHHHHHH
T ss_pred             HHHHHHHHhc-CCCCEEeCccHHHHhCCCCChHHHHHHHHHHHHHHHHcC-CEEEEEchHhcCCCCCCCCCHHHHHHHHH
Confidence            3667888886 9999999998632   1          235677888888 699998875421               37


Q ss_pred             ccceeeecCCCCCCCcccceeeE
Q 046751          113 VIFTLQDGSHYESKKEIESIVLE  135 (155)
Q Consensus       113 ~~L~~tgGSD~H~~~~~~~~~~~  135 (155)
                      +|+.+|+|||+|++..++..+.+
T Consensus       215 ~g~~~~~gSDaH~~~~~~~~~~~  237 (267)
T 2yxo_A          215 LGIGLVLGSDAHRPEEVGFAFPE  237 (267)
T ss_dssp             HTCCEEEECCBSSGGGTTTTHHH
T ss_pred             cCCCEEEecCCCCHHHHHhhHHH
Confidence            89999999999999999976543

>3qy7_A Tyrosine-protein phosphatase YWQE; TIM barrel, polymerase and histindinol phosphatase(PHP)-like phosphatase, hydrolase; 1.62A {Bacillus subtilis} PDB: 3qy6_A

Probab=98.81  E-value=1.6e-09  Score=88.28  Aligned_cols=74  Identities=12%  Similarity=0.047  Sum_probs=59.9

Q ss_pred             CCHHHHHHHHHhcCCeEEecCCCCcCC---hHHHHHHHHHcCCCEEEEecCCCCc-------------ccccceeeecCC
Q 046751           59 HTPQVVVELIHRTSGLAVLAHPWALKN---PAAIIRKLKDVGLHRLEVYRSDGKL-------------VGVIFTLQDGSH  122 (155)
Q Consensus        59 ~~~~e~I~~I~~aGGv~VlAHP~~~~~---~~~~l~~l~~~GldGIEv~~~~~~~-------------~~~~L~~tgGSD  122 (155)
                      ..+.++|..+.++|+++|+|||.++..   ..+.+.++++.|. ++|+..++.+.             .++|++.|.|||
T Consensus       116 ~~~~~~l~~i~~~g~v~ILAHPeRy~~~~~~~~~l~~l~~~G~-~iEiN~~s~~g~~g~~~~~~~~~~~~~gl~~~igSD  194 (262)
T 3qy7_A          116 RYAEQLFYDLQLKGYIPVIAHPERNREIRENPSLLYHLVEKGA-ASQITSGSLAGIFGKQLKAFSLRLVEANLIHFVASD  194 (262)
T ss_dssp             TTHHHHHHHHHHTTCEEEEECGGGCHHHHHCTHHHHHHHHTTC-EEEEEHHHHHTTTCHHHHHHHHHHHHTTCCCEEECC
T ss_pred             HHHHHHHHHHHHCCCcEEEECCCccccccccHHHHHHHHHCCC-EEEEECCccCcccchHHHHHHHHHHhCCCeEEEEcc
Confidence            467999999999999999999997641   1357889999995 89999765431             268999999999


Q ss_pred             CCCCCccccee
Q 046751          123 YESKKEIESIV  133 (155)
Q Consensus       123 ~H~~~~~~~~~  133 (155)
                      +|++...+..+
T Consensus       195 aH~~~~r~~~~  205 (262)
T 3qy7_A          195 AHNVKTRNFHT  205 (262)
T ss_dssp             BCSSSSSCCCH
T ss_pred             CCCCCCCCchH
Confidence            99998766543

>2w9m_A Polymerase X; SAXS, DNA repair, DNA polymerase, DNA replication; 2.46A {Deinococcus radiodurans}

Probab=97.91  E-value=1.5e-05  Score=71.30  Aligned_cols=74  Identities=9%  Similarity=0.139  Sum_probs=54.8

Q ss_pred             HHHHHHHHhcCCeEEecCCCCc---------CChHHHHHHHHHcCCCEEEEecCCCCc----------ccccceeeecCC
Q 046751           62 QVVVELIHRTSGLAVLAHPWAL---------KNPAAIIRKLKDVGLHRLEVYRSDGKL----------VGVIFTLQDGSH  122 (155)
Q Consensus        62 ~e~I~~I~~aGGv~VlAHP~~~---------~~~~~~l~~l~~~GldGIEv~~~~~~~----------~~~~L~~tgGSD  122 (155)
                      +..+++++ .|+++|+|||...         ...+++++.+++.| .+||+.++..+.          .+ |+.+|.|||
T Consensus       440 ~~~~~ai~-~g~v~IlaHP~~~~~~~~~~~~~~~~~il~~~~e~g-~~lEIN~~~~r~~~~~~~~~~a~e-Gl~i~igSD  516 (578)
T 2w9m_A          440 ERLIRAVS-HPLVTVLGHATGRLLLRRPGYALDLDAVLGACEANG-TVVEINANAARLDLDWREALRWRE-RLKFAINTD  516 (578)
T ss_dssp             HHHHHHHT-CSSCCEECSTTCCBTTTBCCCCCCHHHHHHHHHHHT-CEEEEECSTTTCBSCHHHHHHHTT-TCCEEEECC
T ss_pred             HHHHHHHh-cCCCeEEECcchhhcCCCcCchhhHHHHHHHHHHCC-CEEEEECCCCCcCcHHHHHHHHHc-CCEEEEECC
Confidence            44555555 5999999999741         12346788888887 599999887542          37 999999999


Q ss_pred             CCCCCcccceeeEeeehhhh
Q 046751          123 YESKKEIESIVLEILCSIIY  142 (155)
Q Consensus       123 ~H~~~~~~~~~~~~~~~~~~  142 (155)
                      +|.+..++.    |+.++.+
T Consensus       517 AH~~~~~~~----~~~~~~~  532 (578)
T 2w9m_A          517 AHVPGGLRD----ARYGVMQ  532 (578)
T ss_dssp             CSSGGGGGG----HHHHHHH
T ss_pred             CCChhhcch----HHHHHHH
Confidence            999999885    4444443

>3b0x_A DNA polymerase beta family (X family); structural genomics, riken structural genomics/proteomics in RSGI, polxc, PHP, DRP lyase; HET: DNA DGT; 1.36A {Thermus thermophilus} PDB: 3au2_A* 3au6_A* 3auo_A* 3b0y_A*

Probab=97.13  E-value=0.00065  Score=60.48  Aligned_cols=76  Identities=17%  Similarity=0.223  Sum_probs=53.6

Q ss_pred             HHHHHHHHhcCCeEEecCCCC-c-----C---ChHHHHHHHHHcCCCEEEEecCCCCc----------ccccceeeecCC
Q 046751           62 QVVVELIHRTSGLAVLAHPWA-L-----K---NPAAIIRKLKDVGLHRLEVYRSDGKL----------VGVIFTLQDGSH  122 (155)
Q Consensus        62 ~e~I~~I~~aGGv~VlAHP~~-~-----~---~~~~~l~~l~~~GldGIEv~~~~~~~----------~~~~L~~tgGSD  122 (155)
                      ++.+++++ .|+++|+|||.. +     .   ...++++.+++.| .++|+-.+....          .++|+.++.|||
T Consensus       452 ~~l~~~i~-~g~v~IlaHp~~r~~~~r~~~~~~~~~il~~~~~~g-~~lEIN~~~~~~~~~~~~~~~a~e~G~~~vigSD  529 (575)
T 3b0x_A          452 KRLLKALE-NPFVHVLAHPTARLLGRRAPIEADWEAVFQKAKEKG-VAVEIDGYYDRMDLPDDLARMAYGMGLWISLSTD  529 (575)
T ss_dssp             HHHHHHTT-CTTCCEECSTTCCBTTTBCCCCCCHHHHHHHHHHHT-CEEEEECCTTTCBSCHHHHHHHHHTTCCEEEECC
T ss_pred             HHHHHHHh-cCCCeEEECCchhhcCCCcCchHHHHHHHHHHHHcC-CEEEEeCCCCcCCchHHHHHHHHHcCCeEEEECC
Confidence            44455554 799999999972 1     1   2345677777766 699996554331          378999999999


Q ss_pred             CCCCCcccceeeEeeehhhhh
Q 046751          123 YESKKEIESIVLEILCSIIYL  143 (155)
Q Consensus       123 ~H~~~~~~~~~~~~~~~~~~~  143 (155)
                      +|.+..++ +   |..++.++
T Consensus       530 AH~~~~~~-~---~~~~~~~~  546 (575)
T 3b0x_A          530 AHQTDHLR-F---MELAVGTA  546 (575)
T ss_dssp             BSSGGGGG-G---HHHHHHHH
T ss_pred             CCChHHhh-h---HHHHHHHH
Confidence            99999987 3   55555554

>3dcp_A Histidinol-phosphatase; HISK, histidine biosynthesis, NESG, LMR141, structural genomics, PSI-2, protein structure initiative; 2.10A {Listeria monocytogenes str}

Probab=95.28  E-value=0.038  Score=44.86  Aligned_cols=72  Identities=13%  Similarity=-0.015  Sum_probs=47.6

Q ss_pred             HHHHHHHhc-C--CeEEecCCCCc---C---------C-------hHHHHHHHHHcCCCEEEEecCCCC----------c
Q 046751           63 VVVELIHRT-S--GLAVLAHPWAL---K---------N-------PAAIIRKLKDVGLHRLEVYRSDGK----------L  110 (155)
Q Consensus        63 e~I~~I~~a-G--Gv~VlAHP~~~---~---------~-------~~~~l~~l~~~GldGIEv~~~~~~----------~  110 (155)
                      ..+++|+.. |  -+-|++||...   .         .       .+++++.+++.| -++|+-.+..+          .
T Consensus       162 ~~~~~i~~~l~~~~~dilgH~Dlir~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~g-~~lEiN~~~l~~~~~~~~yp~~  240 (283)
T 3dcp_A          162 GVKQSIEADLGLFKPRRMGHISLCQKFQQFFGEDTSDFSEEVMEKFRVILALVKKRD-YELDFNTAGLFKPLCGETYPPK  240 (283)
T ss_dssp             HHHHHHHCCCCTTCCSEECCTTGGGTTGGGGTCCGGGCCHHHHHHHHHHHHHHHHHT-CEEEEECGGGGSTTCCSCBSCH
T ss_pred             HHHHHHHhCccccCCCEEECCcHHHHcCcccccccccccHHHHHHHHHHHHHHHHcC-CEEEEechHhcCCCCCCcCCHH
Confidence            345555542 1  33699999731   1         1       234566666665 47898875421          1


Q ss_pred             ------ccccceeeecCCCCCCCcccceeeE
Q 046751          111 ------VGVIFTLQDGSHYESKKEIESIVLE  135 (155)
Q Consensus       111 ------~~~~L~~tgGSD~H~~~~~~~~~~~  135 (155)
                            .++|..++-|||+|.+..+|.++-+
T Consensus       241 ~~~~~~~~~g~~i~igSDAH~~~~vg~~~~~  271 (283)
T 3dcp_A          241 KIVTLASELQIPFVYGSDSHGVQDIGRGYST  271 (283)
T ss_dssp             HHHHHHHHTTCCEEEECCBSSGGGTTTTHHH
T ss_pred             HHHHHHHHcCCCEEEEcCCCCHHHHhChHHH
Confidence                  3789999999999999999987643

>1v77_A PH1877P, hypothetical protein PH1877; RNAse P protein, TIM-barrel, RNA binding protein; 1.80A {Pyrococcus horikoshii} SCOP: c.6.3.2 PDB: 2czv_A*

Probab=91.57  E-value=0.16  Score=39.29  Aligned_cols=69  Identities=12%  Similarity=0.083  Sum_probs=48.5

Q ss_pred             CHHHHHHHHHhcCCeEEecCCCCcC----ChHHHHHHHHHcCCCEEEEecCCC---Cc-----------------ccccc
Q 046751           60 TPQVVVELIHRTSGLAVLAHPWALK----NPAAIIRKLKDVGLHRLEVYRSDG---KL-----------------VGVIF  115 (155)
Q Consensus        60 ~~~e~I~~I~~aGGv~VlAHP~~~~----~~~~~l~~l~~~GldGIEv~~~~~---~~-----------------~~~~L  115 (155)
                      +.+..-.++. . .+=+++||+..+    ....++...++.|+ .+|+-++..   +.                 +++|.
T Consensus        85 ~~~~n~~a~~-~-~vDII~Hp~~~~~~~~~~~~~a~~A~e~gv-~lEIn~s~~~~~~~~~R~~~~~~~~~il~l~k~~g~  161 (212)
T 1v77_A           85 DLRVIRYSIE-K-GVDAIISPWVNRKDPGIDHVLAKLMVKKNV-ALGFSLRPLLYSNPYERANLLRFMMKAWKLVEKYKV  161 (212)
T ss_dssp             CHHHHHHHHH-T-TCSEEECTTTTSSSCSCCHHHHHHHHHHTC-EEEEESHHHHHSCHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             CHHHHHHHHh-C-CCCEEecccccccCCCCCHHHHHHHHHCCe-EEEEECcHHhcCCcchHHHHHHHHHHHHHHHHhcCC
Confidence            4443334444 4 799999998532    12466666777764 899988763   10                 37899


Q ss_pred             eeeecCCCCCCCcccc
Q 046751          116 TLQDGSHYESKKEIES  131 (155)
Q Consensus       116 ~~tgGSD~H~~~~~~~  131 (155)
                      .++-|||+|.+.+++.
T Consensus       162 ~ivisSDAh~~~~v~~  177 (212)
T 1v77_A          162 RRFLTSSAQEKWDVRY  177 (212)
T ss_dssp             CEEEECCCSSGGGCCC
T ss_pred             CEEEeCCCCChhhcCC
Confidence            9999999999999844

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	155
d2anua1	229	Hypothetical protein TM0559 {Thermotoga maritima [	99.05
d1m65a_	244	Hypothetical protein YcdX {Escherichia coli [TaxId	97.35
d1v77a_	202	Ribonuclease P protein component 3, Rnp3 {Pyrococc	86.29

>d2anua1 c.6.3.1 (A:5-233) Hypothetical protein TM0559 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: 7-stranded beta/alpha barrel
superfamily: PHP domain-like
family: PHP domain
domain: Hypothetical protein TM0559
species: Thermotoga maritima [TaxId: 2336]

Probab=99.05  E-value=9.3e-11  Score=88.51  Aligned_cols=81  Identities=14%  Similarity=0.051  Sum_probs=62.6

Q ss_pred             CCHHHHHHHHHhcCCeEEecCCCCcCCh-------HHHHHHHHHcCCCEEEEecCCCCc---ccccceeeecCCCCCCCc
Q 046751           59 HTPQVVVELIHRTSGLAVLAHPWALKNP-------AAIIRKLKDVGLHRLEVYRSDGKL---VGVIFTLQDGSHYESKKE  128 (155)
Q Consensus        59 ~~~~e~I~~I~~aGGv~VlAHP~~~~~~-------~~~l~~l~~~GldGIEv~~~~~~~---~~~~L~~tgGSD~H~~~~  128 (155)
                      .+.+++++.+++.||++++|||++....       .....+.....++|+|++++....   +++++.+++|||+|.+..
T Consensus       116 ~~~~~~~~~~~~~g~~~i~aHp~~~~~~~~~~~~~~~~~~~~~~~~~~~iE~~~~~~~~~~~~~~~l~~v~~SDaH~~~~  195 (229)
T d2anua1         116 LPVEEIVEKLKEQNALVIAAHPDRKKQDEEHLSWYLWANMERFKDTFDAWEIANRDDLFNSVGVKKYRYVANSDFHELWH  195 (229)
T ss_dssp             SCHHHHHHHHHHTTCEEEECCCCTTC-----CCCHHHHSTTTTTTTCSEEEEEETTEECHHHHHTTCCEEEECCBCSGGG
T ss_pred             cchHHHHHHHHhCCCeEEcccccccccchhhhhhhhHhHHHHHhccCcEEEeccHHHHHHHHHHcCCCEEeeCCCCCccc
Confidence            5789999999999999999999864321       111112234569999999875433   578999999999999999


Q ss_pred             ccceeeEeeeh
Q 046751          129 IESIVLEILCS  139 (155)
Q Consensus       129 ~~~~~~~~~~~  139 (155)
                      +|+-++.+.+.
T Consensus       196 ~G~~~~~~~~~  206 (229)
T d2anua1         196 VYSWKTLVKSE  206 (229)
T ss_dssp             GSSEEEEEEEC
T ss_pred             cCCeEEEEecC
Confidence            99998877654

>d1m65a_ c.6.3.1 (A:) Hypothetical protein YcdX {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: 7-stranded beta/alpha barrel
superfamily: PHP domain-like
family: PHP domain
domain: Hypothetical protein YcdX
species: Escherichia coli [TaxId: 562]

Probab=97.35  E-value=0.00013  Score=53.24  Aligned_cols=78  Identities=14%  Similarity=0.008  Sum_probs=51.1

Q ss_pred             HHHHHHHhcCCeEEecCCCCcC---ChHHHHHHHHHcCCCEEEEecCCCCc----------------ccccceeeecCCC
Q 046751           63 VVVELIHRTSGLAVLAHPWALK---NPAAIIRKLKDVGLHRLEVYRSDGKL----------------VGVIFTLQDGSHY  123 (155)
Q Consensus        63 e~I~~I~~aGGv~VlAHP~~~~---~~~~~l~~l~~~GldGIEv~~~~~~~----------------~~~~L~~tgGSD~  123 (155)
                      +........|.+.+++||.+..   .......... .....+|+.......                .++|+++++|||+
T Consensus       114 ~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~l~~a~~~g~~~v~~SDa  192 (244)
T d1m65a_         114 QAMIATIASGNVHIISHPGNPKYEIDVKAVAEAAA-KHQVALEINNSSFLHSRKGSEDNCREVAAAVRDAGGWVALGSDS  192 (244)
T ss_dssp             HHHHHHHHTSCCSEECCTTCTTSCCCHHHHHHHHH-HHTCEEEEETTC----------CHHHHHHHHHHHTCCEEEECCB
T ss_pred             HHHHHHHHccCCccccccccccchhhHHHHHHHHH-hhhhhhhhcccccccCCccccchHHHHHHHHHHCCCcEEEECCc
Confidence            3344455689999999998643   2223333333 345678887654332                3789999999999


Q ss_pred             CCCCcccceeeEeeehhhhhhh
Q 046751          124 ESKKEIESIVLEILCSIIYLMR  145 (155)
Q Consensus       124 H~~~~~~~~~~~~~~~~~~~~~  145 (155)
                      |.+.+++    -|++++..+.+
T Consensus       193 H~~~~~g----~~~~~~~~~~~  210 (244)
T d1m65a_         193 HTAFTMG----EFEECLKILDA  210 (244)
T ss_dssp             SSGGGTT----CCHHHHHHHHH
T ss_pred             CCHhhhh----hHHHHHHHHHH
Confidence            9998887    36777666543

>d1v77a_ c.6.3.2 (A:) Ribonuclease P protein component 3, Rnp3 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: 7-stranded beta/alpha barrel
superfamily: PHP domain-like
family: RNase P subunit p30
domain: Ribonuclease P protein component 3, Rnp3
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=86.29  E-value=0.31  Score=36.15  Aligned_cols=69  Identities=10%  Similarity=0.056  Sum_probs=48.7

Q ss_pred             HHHHHHHHhcCCeEEecCCCCcC----ChHHHHHHHHHcCCCEEEEecCCC------Cc--------------cccccee
Q 046751           62 QVVVELIHRTSGLAVLAHPWALK----NPAAIIRKLKDVGLHRLEVYRSDG------KL--------------VGVIFTL  117 (155)
Q Consensus        62 ~e~I~~I~~aGGv~VlAHP~~~~----~~~~~l~~l~~~GldGIEv~~~~~------~~--------------~~~~L~~  117 (155)
                      +.+-+.+-+. ++=||+||+...    ....+....++.|+ ++|.-++.-      ++              ++||.++
T Consensus        80 ~~~Nr~A~e~-~VDiL~~p~~~r~~~~~~hvlak~A~e~gV-~lEI~~s~ll~~~~~~R~~~i~~~~~~l~l~kky~~pi  157 (202)
T d1v77a_          80 LRVIRYSIEK-GVDAIISPWVNRKDPGIDHVLAKLMVKKNV-ALGFSLRPLLYSNPYERANLLRFMMKAWKLVEKYKVRR  157 (202)
T ss_dssp             HHHHHHHHHT-TCSEEECTTTTSSSCSCCHHHHHHHHHHTC-EEEEESHHHHHSCHHHHHHHHHHHHHHHHHHHHHTCCE
T ss_pred             HHHHHHHHhC-CccEEecCccccCcccccHHHHHHHHHCCe-EEEEEchhhhccCcccHHHHHHHHHHHHHHHHhcCCcE
Confidence            3455556666 489999998532    23455666677888 999986532      11              3889888


Q ss_pred             eecCCCCCCCcccce
Q 046751          118 QDGSHYESKKEIESI  132 (155)
Q Consensus       118 tgGSD~H~~~~~~~~  132 (155)
                      +-+||.|.+.++.+.
T Consensus       158 VisSdAh~~~dlr~p  172 (202)
T d1v77a_         158 FLTSSAQEKWDVRYP  172 (202)
T ss_dssp             EEECCCSSGGGCCCH
T ss_pred             EEecCCCChhhcCCH
Confidence            999999999887653