Citrus Sinensis ID: 046796

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------10
Protein Sequence
MDVKEDVQENIREPLMPIENILAHEDGGAGDRTNNKKVNPCMVYFSTPIAVCGSYAFGSCAGYSSPTQSAIREDIALSLAEYSVFGSILTFGAMIGAIT
Secondary Structure (PSIPRED)
cccHHHHHHcccccccccccccccccccccccccccccccccHHHHHHHHHHccccccEEEEEccccHHHHHHHHcccHHHHHHHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
cccHHHHHccccccccccccccccccccccccccccccccEEEEEEEEEEEEcccEEEEEEccccHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
MDVKEDVQEnireplmpienilahedggagdrtnnkkvnpcmvyfstpiavcgsyafgscagyssptqsAIREDIALSLAEYSVFGSILTFGAMIGAIT
Flexible Loop (DISEMBL)
mdvkedvqenireplmpiENILAHEDGGAGDRTNNKKVNPCMVYFSTPIAVCGSYAFGSCAGYSSPTQSAIREDIALSLAEYSVFGSILTFGAMIGAIT
Low Complexity Region (SEG)
MDVKEDVQENIREPLMPIENILAHEDGGAGDRTNNKKVNPCMVYFSTPIAVCGSYAFGSCAGYSSPTQSAIREDIALSLAEYSVFGSILTFGAMIGAIT
Disordered region (IsUnstruct)
************************************KVNPCMVYFSTPIAVCGSYAFGSCAGYSSPTQSAIREDIALSLAEYSVFGSILTFGAMIGA**
Disordered Region (DISOPRED)
******************************************VYFSTPIAVCGSYAFGSCAGYSSPTQSAIREDIALSLAEYSVFGSILTFGAMIGAIT
Disordered Region (DISEMBL)
MDVKEDVQENIREPLMPIENILAHEDGGAGDRTNNKKVNPCMVYFSTPIAVCGSYAFGSCAGYSSPTQSAIREDIALSLAEYSVFGSILTFGAMIGAIT
Disordered Region (DISPRO)
*************************************VNPCMVYFSTPIAVCGSYAFGSCAGYSSPTQSAIREDIALSLAEYSVFGSILTFGAMIGAIT
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHi
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDVKEDVQENIREPLMPIENILAHEDGGAGDRTNNKKVNPCMVYFSTPIAVCGSYAFGSCAGYSSPTQSAIREDIALSLAEYSVFGSILTFGAMIGAIT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	99	2.2.26 [Sep-21-2011]
P93051	463	Sugar transporter ERD6-li	yes	no	0.797	0.170	0.560	7e-22
Q8LBI9	482	Sugar transporter ERD6-li	no	no	0.747	0.153	0.584	3e-19
Q0WQ63	470	Sugar transporter ERD6-li	no	no	0.585	0.123	0.655	2e-16
Q94KE0	470	Sugar transporter ERD6-li	no	no	0.676	0.142	0.549	5e-15
Q3ECP7	470	Sugar transporter ERD6-li	no	no	0.494	0.104	0.653	3e-11
Q9LTP6	488	Putative sugar transporte	no	no	0.949	0.192	0.373	4e-11
Q9M0Z9	478	Sugar transporter ERD6-li	no	no	0.505	0.104	0.54	9e-11
O04036	496	Sugar transporter ERD6 OS	no	no	0.565	0.112	0.535	1e-10
Q8VZT3	462	Sugar transporter ERD6-li	no	no	0.666	0.142	0.462	1e-10
Q93Z80	458	Sugar transporter ERD6-li	no	no	0.747	0.161	0.375	3e-10

>sp|P93051|ERDL7_ARATH Sugar transporter ERD6-like 7 OS=Arabidopsis thaliana GN=At2g48020 PE=2 SV=2

 Score =  102 bits (254), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 51/91 (56%), Positives = 67/91 (73%), Gaps = 12/91 (13%)

Query: 9  ENIREPLMPIENILAHEDGGAGDRTNNKKVNPCMVYFSTPIAVCGSYAFGSCAGYSSPTQ 68
          + +REPL+        +   AG + +     P MVY ST +AVCGS+AFGSCAGYSSP Q
Sbjct: 6  DAVREPLV--------DKNMAGSKPDQ----PWMVYLSTFVAVCGSFAFGSCAGYSSPAQ 53

Query: 69 SAIREDIALSLAEYSVFGSILTFGAMIGAIT 99
          +AIR D++L++AE+S+FGS+LTFGAMIGAIT
Sbjct: 54 AAIRNDLSLTIAEFSLFGSLLTFGAMIGAIT 84

Sugar transporter.
Arabidopsis thaliana (taxid: 3702)

>sp|Q8LBI9|EDL16_ARATH Sugar transporter ERD6-like 16 OS=Arabidopsis thaliana GN=At5g18840 PE=2 SV=2

 Score = 93.6 bits (231), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 45/77 (58%), Positives = 59/77 (76%), Gaps = 3/77 (3%)

Query: 22 LAHEDGGAGDRTNNKKVNPCMVYFSTPIAVCGSYAFGSCAGYSSPTQSAIREDIALSLAE 81
          L HED    ++ +    +  MV FST +AVCGS+ FGSC GYS+PTQS+IR+D+ LSLAE
Sbjct: 26 LTHEDD---EKESENNESYLMVLFSTFVAVCGSFEFGSCVGYSAPTQSSIRQDLNLSLAE 82

Query: 82 YSVFGSILTFGAMIGAI 98
          +S+FGSILT GAM+GA+
Sbjct: 83 FSMFGSILTIGAMLGAV 99

Sugar transporter.

Arabidopsis thaliana (taxid: 3702)

>sp|Q0WQ63|ERDL8_ARATH Sugar transporter ERD6-like 8 OS=Arabidopsis thaliana GN=At3g05150 PE=2 SV=1

 Score = 84.3 bits (207), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 38/58 (65%), Positives = 47/58 (81%)

Query: 42 MVYFSTPIAVCGSYAFGSCAGYSSPTQSAIREDIALSLAEYSVFGSILTFGAMIGAIT 99
          MVY ST IAVCGSY FG+C GYS+PTQ  I E++ LS +++SVFGSIL  GA++GAIT
Sbjct: 34 MVYLSTIIAVCGSYEFGTCVGYSAPTQFGIMEELNLSYSQFSVFGSILNMGAVLGAIT 91

Sugar transporter.

Arabidopsis thaliana (taxid: 3702)

>sp|Q94KE0|ERDL3_ARATH Sugar transporter ERD6-like 3 OS=Arabidopsis thaliana GN=SUGTL2 PE=2 SV=1

 Score = 79.7 bits (195), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 39/71 (54%), Positives = 50/71 (70%), Gaps = 4/71 (5%)

Query: 32 RTNNKKVNPC----MVYFSTPIAVCGSYAFGSCAGYSSPTQSAIREDIALSLAEYSVFGS 87
          R N   +N C    +V FST ++VCGS+ FG  AGYSS  Q+ I  D+ LS+A+YS+FGS
Sbjct: 17 RKNQNDINECRITAVVLFSTFVSVCGSFCFGCAAGYSSVAQTGIINDLGLSVAQYSMFGS 76

Query: 88 ILTFGAMIGAI 98
          I+TFG MIGAI
Sbjct: 77 IMTFGGMIGAI 87

Sugar transporter.

Arabidopsis thaliana (taxid: 3702)

>sp|Q3ECP7|ERDL5_ARATH Sugar transporter ERD6-like 5 OS=Arabidopsis thaliana GN=At1g54730 PE=2 SV=2

 Score = 67.4 bits (163), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 32/49 (65%), Positives = 40/49 (81%)

Query: 49 IAVCGSYAFGSCAGYSSPTQSAIREDIALSLAEYSVFGSILTFGAMIGA 97
          +AV GS+ FGS  GYSSP QS + +++ LS+AEYS+FGSILT GAMIGA
Sbjct: 38 VAVSGSFVFGSAIGYSSPVQSDLTKELNLSVAEYSLFGSILTIGAMIGA 86

Sugar transporter.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LTP6|EDL13_ARATH Putative sugar transporter ERD6-like 13 OS=Arabidopsis thaliana GN=At3g20460 PE=3 SV=2

 Score = 67.0 bits (162), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 37/99 (37%), Positives = 61/99 (61%), Gaps = 5/99 (5%)

Query: 4   KEDVQENIRE-PLMPIENILAHEDGGAGDRTNN--KKVNPC--MVYFSTPIAVCGSYAFG 58
           K  +QE+I   PL+    I    +   G R NN  ++  P   ++ F+T  A+CG++++G
Sbjct: 9   KVKIQEDIESVPLLQKVKIQEDIESVKGIRVNNDGEEDGPVTLILLFTTFTALCGTFSYG 68

Query: 59  SCAGYSSPTQSAIREDIALSLAEYSVFGSILTFGAMIGA 97
           + AG++SP Q+ I   + LSLAE+S FG++LT G ++GA
Sbjct: 69  TAAGFTSPAQTGIMAGLNLSLAEFSFFGAVLTIGGLVGA 107

Sugar transporter.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M0Z9|EDL15_ARATH Sugar transporter ERD6-like 15 OS=Arabidopsis thaliana GN=At4g04760 PE=3 SV=2

 Score = 65.5 bits (158), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 27/50 (54%), Positives = 41/50 (82%)

Query: 49 IAVCGSYAFGSCAGYSSPTQSAIREDIALSLAEYSVFGSILTFGAMIGAI 98
          +  CG++AFG   GYS+PTQ++I +D+ LS+A+YS+FGSILT G ++GA+
Sbjct: 37 VGSCGAFAFGCIIGYSAPTQTSIMKDLNLSIADYSLFGSILTVGLILGAL 86

Sugar transporter.

Arabidopsis thaliana (taxid: 3702)

>sp|O04036|ERD6_ARATH Sugar transporter ERD6 OS=Arabidopsis thaliana GN=ERD6 PE=1 SV=3

 Score = 65.1 bits (157), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 30/56 (53%), Positives = 42/56 (75%)

Query: 43  VYFSTPIAVCGSYAFGSCAGYSSPTQSAIREDIALSLAEYSVFGSILTFGAMIGAI 98
           V+ ST +AV GS+  G   G+SS  Q+ I +D++LS+AEYS+FGSILT G +IGA+
Sbjct: 58  VFLSTFVAVSGSFCTGCGVGFSSGAQAGITKDLSLSVAEYSMFGSILTLGGLIGAV 113

Sugar transporter.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8VZT3|EDL12_ARATH Sugar transporter ERD6-like 12 OS=Arabidopsis thaliana GN=SUGTL5 PE=2 SV=1

 Score = 65.1 bits (157), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 31/67 (46%), Positives = 46/67 (68%), Gaps = 1/67 (1%)

Query: 32 RTNNKKVNPCMVYFSTPIAVCGSYAFGSCAGYSSPTQSAIREDIALSLAEYSVFGSILTF 91
          + ++    P ++ FST I V  S+ FG+  GY++ T S+I  D+ LSLA++S+FGS+ TF
Sbjct: 16 KEDSANTTPLLI-FSTFIIVSASFTFGAAIGYTADTMSSIMSDLDLSLAQFSLFGSLSTF 74

Query: 92 GAMIGAI 98
          G MIGAI
Sbjct: 75 GGMIGAI 81

Sugar transporter.

Arabidopsis thaliana (taxid: 3702)

>sp|Q93Z80|EDL10_ARATH Sugar transporter ERD6-like 10 OS=Arabidopsis thaliana GN=At3g05160 PE=2 SV=1

 Score = 63.9 bits (154), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 30/80 (37%), Positives = 54/80 (67%), Gaps = 6/80 (7%)

Query: 19 ENILAHEDGGAGDRTNNKKVNPCMVYFSTPIAVCGSYAFGSCAGYSSPTQSAIREDIALS 78
          E +L HE+    DR +++++  C++  ST +AVC S+++G   GY+S  ++AI +++ LS
Sbjct: 3  EGLLRHEN----DR-DDRRITACVI-LSTFVAVCSSFSYGCANGYTSGAETAIMKELDLS 56

Query: 79 LAEYSVFGSILTFGAMIGAI 98
          +A++S FGS L  G  +GA+
Sbjct: 57 MAQFSAFGSFLNLGGAVGAL 76

Sugar transporter.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	99
224068735	484	predicted protein [Populus trichocarpa]	0.979	0.200	0.579	6e-26
359479783	490	PREDICTED: sugar transporter ERD6-like 7	1.0	0.202	0.611	8e-26
356504884	471	PREDICTED: sugar transporter ERD6-like 7	0.878	0.184	0.605	3e-25
255567600	481	sugar transporter, putative [Ricinus com	0.888	0.182	0.627	2e-24
356572150	466	PREDICTED: sugar transporter ERD6-like 7	0.828	0.175	0.581	4e-24
255647964	223	unknown [Glycine max]	0.828	0.367	0.571	1e-23
356503511	421	PREDICTED: LOW QUALITY PROTEIN: sugar tr	0.828	0.194	0.561	6e-23
449490467	473	PREDICTED: LOW QUALITY PROTEIN: sugar tr	0.898	0.188	0.581	1e-22
449444655	473	PREDICTED: sugar transporter ERD6-like 7	0.898	0.188	0.581	1e-22
350539447	480	st3 protein [Solanum lycopersicum] gi|23	0.939	0.193	0.557	7e-21

>gi|224068735|ref|XP_002302812.1| predicted protein [Populus trichocarpa] gi|222844538|gb|EEE82085.1| predicted protein [Populus trichocarpa]

 Score =  121 bits (303), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 62/107 (57%), Positives = 79/107 (73%), Gaps = 10/107 (9%)

Query: 1   MDVKEDVQ--------ENIREPLMPIENILAHEDGGAGDRTNNKKVNPCMVYFSTPIAVC 52
           M ++ED++        E +REPLM  +N    +DG      ++ K +  MVY ST +AVC
Sbjct: 1   MGIQEDLEQCKNRAEHEEVREPLMDKKNQSGEQDGSFAQ--SSSKESAWMVYLSTFVAVC 58

Query: 53  GSYAFGSCAGYSSPTQSAIREDIALSLAEYSVFGSILTFGAMIGAIT 99
           GS+AFGSCAGYSSPT++A+RED++LSLAEYSVFGSILTFGAMIGAIT
Sbjct: 59  GSFAFGSCAGYSSPTENAVREDLSLSLAEYSVFGSILTFGAMIGAIT 105

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359479783|ref|XP_002270927.2| PREDICTED: sugar transporter ERD6-like 7-like [Vitis vinifera] gi|310877884|gb|ADP37173.1| putative ERD6-like transporter [Vitis vinifera]

 Score =  120 bits (302), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 66/108 (61%), Positives = 80/108 (74%), Gaps = 9/108 (8%)

Query: 1   MDVKEDV-------QENIREPLMPIENILAHEDG-GAGDRTN-NKKVNPCMVYFSTPIAV 51
           M++K+DV       QE IR+PLM  +  L    G G+ D+T+ + K +  MVY ST +AV
Sbjct: 4   MNIKQDVEKGEDSTQEEIRKPLMQGQKNLPDAGGSGSEDQTDQSSKEHLWMVYLSTFVAV 63

Query: 52  CGSYAFGSCAGYSSPTQSAIREDIALSLAEYSVFGSILTFGAMIGAIT 99
           CGS+ FGSCAGYSSPTQ+AIRED+ LSL EYSVFGSILTFGAMIGAIT
Sbjct: 64  CGSFEFGSCAGYSSPTQTAIREDLDLSLGEYSVFGSILTFGAMIGAIT 111

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356504884|ref|XP_003521224.1| PREDICTED: sugar transporter ERD6-like 7-like [Glycine max]

 Score =  118 bits (296), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 63/104 (60%), Positives = 77/104 (74%), Gaps = 17/104 (16%)

Query: 1  MDVKEDV----QENIREPLMPIENILAHEDGGAGDRTNN-KKVNPCMVYFSTPIAVCGSY 55
          M +KEDV    Q+ IREPL+             G++ ++  K +P MVYFST IAVCGSY
Sbjct: 1  MAIKEDVEDRTQKGIREPLV------------VGEQNHHANKGHPWMVYFSTFIAVCGSY 48

Query: 56 AFGSCAGYSSPTQSAIREDIALSLAEYSVFGSILTFGAMIGAIT 99
           FG+CAGYSSPTQ AIR+D++LSLAEYS+FGSILTFGAM+GAIT
Sbjct: 49 EFGACAGYSSPTQDAIRKDLSLSLAEYSLFGSILTFGAMVGAIT 92

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255567600|ref|XP_002524779.1| sugar transporter, putative [Ricinus communis] gi|223535963|gb|EEF37622.1| sugar transporter, putative [Ricinus communis]

 Score =  116 bits (291), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 59/94 (62%), Positives = 72/94 (76%), Gaps = 6/94 (6%)

Query: 6   DVQENIREPLMPIENILAHEDGGAGDRTNNKKVNPCMVYFSTPIAVCGSYAFGSCAGYSS 65
           DVQE +REPLM  +N+   E+G     +  + ++  MVY ST ++VCGS+ FG CAGYSS
Sbjct: 15  DVQEEVREPLMG-KNLADEENG-----SREQNISNWMVYLSTFVSVCGSFEFGCCAGYSS 68

Query: 66  PTQSAIREDIALSLAEYSVFGSILTFGAMIGAIT 99
           PTQ AI ED++LSLAEYSVFGSILTFGAMIGAIT
Sbjct: 69  PTQDAITEDLSLSLAEYSVFGSILTFGAMIGAIT 102

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356572150|ref|XP_003554233.1| PREDICTED: sugar transporter ERD6-like 7-like isoform 1 [Glycine max]

 Score =  115 bits (287), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 57/98 (58%), Positives = 70/98 (71%), Gaps = 16/98 (16%)

Query: 2  DVKEDVQENIREPLMPIENILAHEDGGAGDRTNNKKVNPCMVYFSTPIAVCGSYAFGSCA 61
          DV+E +Q+ +REPL+                    K +P MVYF+T +AVCGSY FG+CA
Sbjct: 6  DVEEGMQKGVREPLV----------------VRASKGHPWMVYFTTFVAVCGSYEFGACA 49

Query: 62 GYSSPTQSAIREDIALSLAEYSVFGSILTFGAMIGAIT 99
          GYSSPTQ AIR+D +LSLAEYS+FGSILTFGAM+GAIT
Sbjct: 50 GYSSPTQDAIRKDFSLSLAEYSLFGSILTFGAMVGAIT 87

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255647964|gb|ACU24439.1| unknown [Glycine max]

 Score =  113 bits (283), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 56/98 (57%), Positives = 69/98 (70%), Gaps = 16/98 (16%)

Query: 2  DVKEDVQENIREPLMPIENILAHEDGGAGDRTNNKKVNPCMVYFSTPIAVCGSYAFGSCA 61
          DV+E +Q+ +REPL+                    K +P MVYF+  +AVCGSY FG+CA
Sbjct: 6  DVEEGMQKGVREPLV----------------VRASKGHPWMVYFTAFVAVCGSYEFGACA 49

Query: 62 GYSSPTQSAIREDIALSLAEYSVFGSILTFGAMIGAIT 99
          GYSSPTQ AIR+D +LSLAEYS+FGSILTFGAM+GAIT
Sbjct: 50 GYSSPTQDAIRKDFSLSLAEYSLFGSILTFGAMVGAIT 87

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356503511|ref|XP_003520551.1| PREDICTED: LOW QUALITY PROTEIN: sugar transporter ERD6-like 7-like [Glycine max]

 Score =  111 bits (277), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 55/98 (56%), Positives = 70/98 (71%), Gaps = 16/98 (16%)

Query: 2  DVKEDVQENIREPLMPIENILAHEDGGAGDRTNNKKVNPCMVYFSTPIAVCGSYAFGSCA 61
          DV+E +Q+ +REPL+   +                K +P MVYF+T +AVCGSY FG+C+
Sbjct: 6  DVEEGMQKGVREPLVAYAS----------------KGHPWMVYFTTFVAVCGSYEFGACS 49

Query: 62 GYSSPTQSAIREDIALSLAEYSVFGSILTFGAMIGAIT 99
          GYSSPTQ AIR+D +LSLAEYS+FGS LTFGAM+GAIT
Sbjct: 50 GYSSPTQDAIRKDFSLSLAEYSLFGSXLTFGAMVGAIT 87

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449490467|ref|XP_004158614.1| PREDICTED: LOW QUALITY PROTEIN: sugar transporter ERD6-like 7-like [Cucumis sativus]

 Score =  110 bits (274), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 57/98 (58%), Positives = 69/98 (70%), Gaps = 9/98 (9%)

Query: 2  DVKEDVQENIREPLMPIENILAHEDGGAGDRTNNKKVNPCMVYFSTPIAVCGSYAFGSCA 61
          DV+E  QE   +P +  E+   H         N+++  P MVY ST +AVCGSY FG+CA
Sbjct: 6  DVEESGQEAAGQPFLQDESKWTH---------NSEERRPWMVYLSTLVAVCGSYEFGTCA 56

Query: 62 GYSSPTQSAIREDIALSLAEYSVFGSILTFGAMIGAIT 99
          GYSSPTQSAI  D+ LSLAE+S+FGSILTFGAMIGAIT
Sbjct: 57 GYSSPTQSAIINDLHLSLAEFSLFGSILTFGAMIGAIT 94

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449444655|ref|XP_004140089.1| PREDICTED: sugar transporter ERD6-like 7-like [Cucumis sativus]

 Score =  110 bits (274), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 57/98 (58%), Positives = 69/98 (70%), Gaps = 9/98 (9%)

Query: 2  DVKEDVQENIREPLMPIENILAHEDGGAGDRTNNKKVNPCMVYFSTPIAVCGSYAFGSCA 61
          DV+E  QE   +P +  E+   H         N+++  P MVY ST +AVCGSY FG+CA
Sbjct: 6  DVEESGQEAAGQPFLQDESKWTH---------NSEERRPWMVYLSTLVAVCGSYEFGTCA 56

Query: 62 GYSSPTQSAIREDIALSLAEYSVFGSILTFGAMIGAIT 99
          GYSSPTQSAI  D+ LSLAE+S+FGSILTFGAMIGAIT
Sbjct: 57 GYSSPTQSAIINDLHLSLAEFSLFGSILTFGAMIGAIT 94

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|350539447|ref|NP_001233882.1| st3 protein [Solanum lycopersicum] gi|23504385|emb|CAC00697.2| putative sugar transporter [Solanum lycopersicum]

 Score =  104 bits (259), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 58/104 (55%), Positives = 71/104 (68%), Gaps = 11/104 (10%)

Query: 3   VKEDVQ-------ENIREPLMPIENILAHEDGGAGDRTNNKKVNPCMVYFSTPIAVCGSY 55
           +KED++       E I  PL+   N    E+ G  +    KK + CMVY ST +AV GSY
Sbjct: 1   MKEDIEHSENRVNEEITTPLIIQTNKRVKEENGCYE----KKQDRCMVYLSTLVAVRGSY 56

Query: 56  AFGSCAGYSSPTQSAIREDIALSLAEYSVFGSILTFGAMIGAIT 99
           + GSCAGYSSPTQSAIRED+ LS+A+ S+FGSI TFGAMIGAIT
Sbjct: 57  SLGSCAGYSSPTQSAIREDLNLSIAQISLFGSIWTFGAMIGAIT 100

Source: Solanum lycopersicum

Species: Solanum lycopersicum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	99
TAIR|locus:2066400	463	AT2G48020 [Arabidopsis thalian	0.656	0.140	0.707	3.1e-20
TAIR|locus:2144975	482	AT5G18840 "AT5G18840" [Arabido	0.747	0.153	0.610	1.2e-18
TAIR|locus:2096219	470	AT3G05150 [Arabidopsis thalian	0.585	0.123	0.655	2.2e-15
TAIR|locus:2199539	470	AT1G54730 [Arabidopsis thalian	0.525	0.110	0.634	1.1e-11
TAIR|locus:2092379	488	AT3G20460 [Arabidopsis thalian	0.949	0.192	0.373	2.5e-11
TAIR|locus:2079802	462	AT3G05400 [Arabidopsis thalian	0.666	0.142	0.462	2.1e-10
TAIR|locus:2096234	458	AT3G05160 [Arabidopsis thalian	0.747	0.161	0.375	2.6e-10
TAIR|locus:505006329	467	AT3G05165 [Arabidopsis thalian	0.747	0.158	0.362	3.5e-10
TAIR|locus:2146350	474	SFP1 [Arabidopsis thaliana (ta	0.616	0.128	0.435	3.6e-10
TAIR|locus:2138927	482	AT4G04750 [Arabidopsis thalian	0.848	0.174	0.366	3.7e-10

TAIR|locus:2066400 AT2G48020 [Arabidopsis thaliana (taxid:3702)]

 Score = 245 (91.3 bits), Expect = 3.1e-20, P = 3.1e-20
 Identities = 46/65 (70%), Positives = 57/65 (87%)

Query:    35 NKKVNPCMVYFSTPIAVCGSYAFGSCAGYSSPTQSAIREDIALSLAEYSVFGSILTFGAM 94
             +K   P MVY ST +AVCGS+AFGSCAGYSSP Q+AIR D++L++AE+S+FGS+LTFGAM
Sbjct:    20 SKPDQPWMVYLSTFVAVCGSFAFGSCAGYSSPAQAAIRNDLSLTIAEFSLFGSLLTFGAM 79

Query:    95 IGAIT 99
             IGAIT
Sbjct:    80 IGAIT 84

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006810 "transport" evidence=IEA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0009507 "chloroplast" evidence=IDA

GO:0005773 "vacuole" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

TAIR|locus:2144975 AT5G18840 "AT5G18840" [Arabidopsis thaliana (taxid:3702)]

 Score = 231 (86.4 bits), Expect = 1.2e-18, P = 1.2e-18
 Identities = 47/77 (61%), Positives = 59/77 (76%)

Query:    22 LAHEDGGAGDRTNNKKVNPCMVYFSTPIAVCGSYAFGSCAGYSSPTQSAIREDIALSLAE 81
             L HED    +  NN+     MV FST +AVCGS+ FGSC GYS+PTQS+IR+D+ LSLAE
Sbjct:    26 LTHEDDEK-ESENNESY--LMVLFSTFVAVCGSFEFGSCVGYSAPTQSSIRQDLNLSLAE 82

Query:    82 YSVFGSILTFGAMIGAI 98
             +S+FGSILT GAM+GA+
Sbjct:    83 FSMFGSILTIGAMLGAV 99

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

TAIR|locus:2096219 AT3G05150 [Arabidopsis thaliana (taxid:3702)]

 Score = 201 (75.8 bits), Expect = 2.2e-15, P = 2.2e-15
 Identities = 38/58 (65%), Positives = 47/58 (81%)

Query:    42 MVYFSTPIAVCGSYAFGSCAGYSSPTQSAIREDIALSLAEYSVFGSILTFGAMIGAIT 99
             MVY ST IAVCGSY FG+C GYS+PTQ  I E++ LS +++SVFGSIL  GA++GAIT
Sbjct:    34 MVYLSTIIAVCGSYEFGTCVGYSAPTQFGIMEELNLSYSQFSVFGSILNMGAVLGAIT 91

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006810 "transport" evidence=IEA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

TAIR|locus:2199539 AT1G54730 [Arabidopsis thaliana (taxid:3702)]

 Score = 167 (63.8 bits), Expect = 1.1e-11, P = 1.1e-11
 Identities = 33/52 (63%), Positives = 42/52 (80%)

Query:    46 STPIAVCGSYAFGSCAGYSSPTQSAIREDIALSLAEYSVFGSILTFGAMIGA 97
             +T +AV GS+ FGS  GYSSP QS + +++ LS+AEYS+FGSILT GAMIGA
Sbjct:    35 TTFVAVSGSFVFGSAIGYSSPVQSDLTKELNLSVAEYSLFGSILTIGAMIGA 86

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006810 "transport" evidence=IEA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

TAIR|locus:2092379 AT3G20460 [Arabidopsis thaliana (taxid:3702)]

 Score = 164 (62.8 bits), Expect = 2.5e-11, P = 2.5e-11
 Identities = 37/99 (37%), Positives = 61/99 (61%)

Query:     4 KEDVQENIRE-PLMPIENILAHEDGGAGDRTNN--KKVNPC--MVYFSTPIAVCGSYAFG 58
             K  +QE+I   PL+    I    +   G R NN  ++  P   ++ F+T  A+CG++++G
Sbjct:     9 KVKIQEDIESVPLLQKVKIQEDIESVKGIRVNNDGEEDGPVTLILLFTTFTALCGTFSYG 68

Query:    59 SCAGYSSPTQSAIREDIALSLAEYSVFGSILTFGAMIGA 97
             + AG++SP Q+ I   + LSLAE+S FG++LT G ++GA
Sbjct:    69 TAAGFTSPAQTGIMAGLNLSLAEFSFFGAVLTIGGLVGA 107

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006810 "transport" evidence=IEA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

TAIR|locus:2079802 AT3G05400 [Arabidopsis thaliana (taxid:3702)]

 Score = 155 (59.6 bits), Expect = 2.1e-10, P = 2.1e-10
 Identities = 31/67 (46%), Positives = 46/67 (68%)

Query:    32 RTNNKKVNPCMVYFSTPIAVCGSYAFGSCAGYSSPTQSAIREDIALSLAEYSVFGSILTF 91
             + ++    P ++ FST I V  S+ FG+  GY++ T S+I  D+ LSLA++S+FGS+ TF
Sbjct:    16 KEDSANTTPLLI-FSTFIIVSASFTFGAAIGYTADTMSSIMSDLDLSLAQFSLFGSLSTF 74

Query:    92 GAMIGAI 98
             G MIGAI
Sbjct:    75 GGMIGAI 81

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006810 "transport" evidence=IEA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

TAIR|locus:2096234 AT3G05160 [Arabidopsis thaliana (taxid:3702)]

 Score = 154 (59.3 bits), Expect = 2.6e-10, P = 2.6e-10
 Identities = 30/80 (37%), Positives = 54/80 (67%)

Query:    19 ENILAHEDGGAGDRTNNKKVNPCMVYFSTPIAVCGSYAFGSCAGYSSPTQSAIREDIALS 78
             E +L HE+    DR +++++  C++  ST +AVC S+++G   GY+S  ++AI +++ LS
Sbjct:     3 EGLLRHEN----DR-DDRRITACVI-LSTFVAVCSSFSYGCANGYTSGAETAIMKELDLS 56

Query:    79 LAEYSVFGSILTFGAMIGAI 98
             +A++S FGS L  G  +GA+
Sbjct:    57 MAQFSAFGSFLNLGGAVGAL 76

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006810 "transport" evidence=IEA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

TAIR|locus:505006329 AT3G05165 [Arabidopsis thaliana (taxid:3702)]

 Score = 153 (58.9 bits), Expect = 3.5e-10, P = 3.5e-10
 Identities = 29/80 (36%), Positives = 55/80 (68%)

Query:    19 ENILAHEDGGAGDRTNNKKVNPCMVYFSTPIAVCGSYAFGSCAGYSSPTQSAIREDIALS 78
             E +L H++    DR +++++  C++  ST +AVC ++++G  AGY+S  ++AI +++ LS
Sbjct:    12 EGLLQHQN----DR-DDRRITACVI-LSTFVAVCSAFSYGCAAGYTSGAETAIMKELDLS 65

Query:    79 LAEYSVFGSILTFGAMIGAI 98
             +A++S FGS L  G  +GA+
Sbjct:    66 MAQFSAFGSFLNVGGAVGAL 85

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006810 "transport" evidence=IEA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

TAIR|locus:2146350 SFP1 [Arabidopsis thaliana (taxid:3702)]

 Score = 153 (58.9 bits), Expect = 3.6e-10, P = 3.6e-10
 Identities = 27/62 (43%), Positives = 44/62 (70%)

Query:    37 KVNPCMVYFSTPIAVCGSYAFGSCAGYSSPTQSAIREDIALSLAEYSVFGSILTFGAMIG 96
             ++  C++  ST +AVCGS++FG   GY+S  ++ + +D+ LS+A++S FGS  T GA IG
Sbjct:    26 RITACVI-LSTFVAVCGSFSFGVATGYTSGAETGVMKDLDLSIAQFSAFGSFATLGAAIG 84

Query:    97 AI 98
             A+
Sbjct:    85 AL 86

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006810 "transport" evidence=IEA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0009624 "response to nematode" evidence=IEP

GO:0010167 "response to nitrate" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

TAIR|locus:2138927 AT4G04750 [Arabidopsis thaliana (taxid:3702)]

 Score = 153 (58.9 bits), Expect = 3.7e-10, P = 3.7e-10
 Identities = 33/90 (36%), Positives = 56/90 (62%)

Query:    13 EPLMP--IENILAHEDGGAG--DRTNNKKVNPCMVYFSTPIAVCGSYAFGSCAGYSSPTQ 68
             E L+P   E++ A  +  +      +N    P ++ F+  +  CG+ +FG   GY++PTQ
Sbjct:     4 ESLLPSHTEDVSASPNKSSSLLSEISNASTRPFVLAFT--VGSCGALSFGCIVGYTAPTQ 61

Query:    69 SAIREDIALSLAEYSVFGSILTFGAMIGAI 98
             S+I +D+ LS+A++S FGSILT G ++GA+
Sbjct:    62 SSIMKDLNLSIADFSFFGSILTVGLILGAL 91

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006810 "transport" evidence=IEA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	99
KOG0569	485	consensus Permease of the major facilitator superf	97.56
PRK10077	479	xylE D-xylose transporter XylE; Provisional	97.5
KOG0254	513	consensus Predicted transporter (major facilitator	97.28
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	97.26
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	97.03
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	96.9
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	96.72
TIGR00891	405	2A0112 putative sialic acid transporter.	96.21
PRK12307	426	putative sialic acid transporter; Provisional	95.63
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	95.61
PRK03545	390	putative arabinose transporter; Provisional	95.31
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	95.24
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	95.1
PRK03699	394	putative transporter; Provisional	94.98
TIGR00895	398	2A0115 benzoate transport.	94.88
PRK03893	496	putative sialic acid transporter; Provisional	94.65
PRK10213	394	nepI ribonucleoside transporter; Reviewed	94.62
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	94.59
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	94.34
PRK14995	495	methyl viologen resistance protein SmvA; Provision	94.34
PRK11663	434	regulatory protein UhpC; Provisional	94.19
PRK03633	381	putative MFS family transporter protein; Provision	94.02
PF06779	85	DUF1228: Protein of unknown function (DUF1228); In	93.62
PRK10091	382	MFS transport protein AraJ; Provisional	92.86
TIGR00805	633	oat sodium-independent organic anion transporter.	92.36
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	92.31
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	92.15
PRK09705	393	cynX putative cyanate transporter; Provisional	92.08
PRK10133	438	L-fucose transporter; Provisional	92.03
PRK10406	432	alpha-ketoglutarate transporter; Provisional	91.91
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	91.9
PRK10504	471	putative transporter; Provisional	91.37
PLN00028	476	nitrate transmembrane transporter; Provisional	91.15
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	90.55
PRK05122	399	major facilitator superfamily transporter; Provisi	90.47
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	89.92
PRK15403	413	multidrug efflux system protein MdtM; Provisional	89.88
PRK11043	401	putative transporter; Provisional	88.48
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	88.26
PRK11652	394	emrD multidrug resistance protein D; Provisional	87.85
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	87.38
PRK10642	490	proline/glycine betaine transporter; Provisional	86.94
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	85.4
TIGR00893	399	2A0114 d-galactonate transporter.	85.12
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	84.83
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	84.79
KOG2325	488	consensus Predicted transporter/transmembrane prot	84.48
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	83.8
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	83.4
TIGR00896	355	CynX cyanate transporter. This family of proteins	82.75
PRK15075	434	citrate-proton symporter; Provisional	82.55
PRK12382	392	putative transporter; Provisional	80.26
PRK10473	392	multidrug efflux system protein MdtL; Provisional	80.21

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=97.56  E-value=0.00015  Score=58.46  Aligned_cols=61  Identities=28%  Similarity=0.411  Sum_probs=49.4

Q ss_pred             CchHHHHHHHHHHHhhhhhhhccceehHhHHHHHh--------hcC--CCch----HHHHHHHHHHHHHHhhccC
Q 046796           39 NPCMVYFSTPIAVCGSYAFGSCAGYSSPTQSAIRE--------DIA--LSLA----EYSVFGSILTFGAMIGAIT   99 (99)
Q Consensus        39 ~~~~~~~~~~vaalg~~~~Gy~~G~~s~~l~~l~~--------~~~--is~~----~~s~i~Si~~lGa~~Gal~   99 (99)
                      .+++.++.++++++|++.+||+.+++++..+.+++        .++  ++++    .++.++|++.+|+++|+++
T Consensus         5 ~t~~L~~~~~~~~~gsf~~Gy~~~~iNap~~~i~~f~n~t~~~r~g~~~s~~~~~~lwS~~vs~f~iG~~~Gs~~   79 (485)
T KOG0569|consen    5 LTRRLLLAVIVATLGSFQFGYNIGVVNAPQELIKSFINETLIERYGLPLSDSTLDLLWSLIVSIFFIGGMIGSFS   79 (485)
T ss_pred             ccHHHHHHHHHHHHhchhhhhhheecCchHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56788899999999999999999999999865443        344  4543    3689999999999999863

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=97.50  E-value=0.00022  Score=54.81  Aligned_cols=59  Identities=17%  Similarity=0.190  Sum_probs=51.4

Q ss_pred             hHHHHHHHHHHHhhhhhhhccceehHhHHHHHhhc--------CCCchHHHHHHHHHHHHHHhhccC
Q 046796           41 CMVYFSTPIAVCGSYAFGSCAGYSSPTQSAIREDI--------ALSLAEYSVFGSILTFGAMIGAIT   99 (99)
Q Consensus        41 ~~~~~~~~vaalg~~~~Gy~~G~~s~~l~~l~~~~--------~is~~~~s~i~Si~~lGa~~Gal~   99 (99)
                      ++++.++++++++.+..|||.++++++.+.+++.+        ++++.+.+|+.++..+|.++|+++
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ig~~~~~~~   74 (479)
T PRK10077          8 SYIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGAL   74 (479)
T ss_pred             hHHHHHHHHHHHHHHhcCcccceehHhHHHHHHHhcccccccccCChhHHHHHHHHHHHHHHHHHHH
Confidence            45678888889999999999999999998888765        777888999999999999998753

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=97.28  E-value=0.00059  Score=54.07  Aligned_cols=61  Identities=21%  Similarity=0.268  Sum_probs=48.4

Q ss_pred             CchHHHHHHHHHHHhhhhhhhc--cceehHhHHHHHhhc-----CCCc--hHHHHHHHHHHHHHHhhccC
Q 046796           39 NPCMVYFSTPIAVCGSYAFGSC--AGYSSPTQSAIREDI-----ALSL--AEYSVFGSILTFGAMIGAIT   99 (99)
Q Consensus        39 ~~~~~~~~~~vaalg~~~~Gy~--~G~~s~~l~~l~~~~-----~is~--~~~s~i~Si~~lGa~~Gal~   99 (99)
                      .+..+++.++.++++++.+||+  .|+.+++...+++..     ..+.  .+++|++++..+|+++|+++
T Consensus        39 ~~~~~~~~~~~~~~~~~~fg~~g~~g~~s~~~~~~~~~~~~~~~~~~~~~~~~s~~~s~~~lga~~g~l~  108 (513)
T KOG0254|consen   39 ISPFVILLALVAALGGLLFGYDGDIGGISGALDFLQRFASLYDLSTGEYSVRQGLLTSILNLGALVGSLL  108 (513)
T ss_pred             CceehHHHHHHHHHHHHHhCcccccccchhhHHHHHhcccccccccchhHHHHHHHHHHHHHHHHHHHHH
Confidence            3457789999999999999998  889999988777632     1222  34599999999999999863

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=97.26  E-value=0.00067  Score=57.12  Aligned_cols=59  Identities=15%  Similarity=0.109  Sum_probs=52.9

Q ss_pred             chHHHHHHHHHHHhhhhhhhccceehHhHHHHHhhcCCCchHHHHHHHHHHHHHHhhcc
Q 046796           40 PCMVYFSTPIAVCGSYAFGSCAGYSSPTQSAIREDIALSLAEYSVFGSILTFGAMIGAI   98 (99)
Q Consensus        40 ~~~~~~~~~vaalg~~~~Gy~~G~~s~~l~~l~~~~~is~~~~s~i~Si~~lGa~~Gal   98 (99)
                      .++++...++.+++.+..||+...++.++|.+.++++++..+.+|+.++..+|.++|++
T Consensus       162 ~~~~~~l~~i~~l~~~~~g~d~~~is~ilp~i~~~~gls~~~~g~l~s~~~lG~iiG~l  220 (742)
T TIGR01299       162 GRFQWALFFVLGLALMADGVEVFVVGFVLPSAEKDLCIPDSGKGMLGLIVYLGMMVGAF  220 (742)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHH
Confidence            45677777888888899999999999999999999999999999999999999999975

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=97.03  E-value=0.0015  Score=49.18  Aligned_cols=65  Identities=14%  Similarity=0.130  Sum_probs=54.7

Q ss_pred             CCCCCCCCchHHHHHHHHHHHhhhhhhhccceehHhHHHHHhhcCCCchHHHHHHHHHHHHHHhhcc
Q 046796           32 RTNNKKVNPCMVYFSTPIAVCGSYAFGSCAGYSSPTQSAIREDIALSLAEYSVFGSILTFGAMIGAI   98 (99)
Q Consensus        32 ~~~~~~~~~~~~~~~~~vaalg~~~~Gy~~G~~s~~l~~l~~~~~is~~~~s~i~Si~~lGa~~Gal   98 (99)
                      +.|.+  ..++.+...+++.+..+..|++....+...|.+.++++.++.+.+++.++..+|.++|++
T Consensus         4 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~   68 (406)
T PRK11551          4 RTSSA--SSSRLALTIGLCFLVALLEGLDLQSAGVAAPRMAQEFGLDVAQMGWAFSAGILGLLPGAL   68 (406)
T ss_pred             ccccc--chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHH
Confidence            44445  555777777777888899999999999999999999999999999999999999988764

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=96.90  E-value=0.0015  Score=51.37  Aligned_cols=60  Identities=12%  Similarity=-0.011  Sum_probs=50.1

Q ss_pred             CchHHHHHHHHHHHhhhhhhhccceehHhHHHHHhh-----cCCCchHHHHHHHHHHHHHHhhcc
Q 046796           39 NPCMVYFSTPIAVCGSYAFGSCAGYSSPTQSAIRED-----IALSLAEYSVFGSILTFGAMIGAI   98 (99)
Q Consensus        39 ~~~~~~~~~~vaalg~~~~Gy~~G~~s~~l~~l~~~-----~~is~~~~s~i~Si~~lGa~~Gal   98 (99)
                      ..++++..+++++++.+++|||.+.++.+++.+..+     ..+++.+++++.++..+|.++|++
T Consensus        10 ~~~~~~~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~   74 (502)
T TIGR00887        10 FGWQHFRAIVIAGVGFFTDSYDLFCISLVTKMLGYVYYHGKGPLPSSVSAAVNGSASIGTLAGQL   74 (502)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHH
Confidence            457888888999999999999999999999877653     235566779999999999999875

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=96.72  E-value=0.003  Score=47.31  Aligned_cols=60  Identities=22%  Similarity=0.268  Sum_probs=49.0

Q ss_pred             CchHHHHHHHHHHHhhhhhhhccceehHhHHHHHhhcCCC--------chHHHHHHHHHHHHHHhhcc
Q 046796           39 NPCMVYFSTPIAVCGSYAFGSCAGYSSPTQSAIREDIALS--------LAEYSVFGSILTFGAMIGAI   98 (99)
Q Consensus        39 ~~~~~~~~~~vaalg~~~~Gy~~G~~s~~l~~l~~~~~is--------~~~~s~i~Si~~lGa~~Gal   98 (99)
                      ..++.+..++++.++.+.++++.+.+++..+.+..+++++        ..+.+|+.+++.++..++++
T Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~   89 (481)
T TIGR00879        22 TYWKVALLSLIAAIGGLMFGYDTGVIGGALALPAFEFKFTSANSDSYSSSLWGLVVSIFLVGGFIGAL   89 (481)
T ss_pred             ccHHHHHHHHHHHHHHHhcccccchhhhhhhcHHHHHhcCCcccCCCChhHHHHHHHHHHHHHHHHHH
Confidence            4466677777888888999999999999988766655544        78899999999999988865

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>TIGR00891 2A0112 putative sialic acid transporter

Probab=96.21  E-value=0.0095  Score=44.08  Aligned_cols=58  Identities=10%  Similarity=-0.026  Sum_probs=49.5

Q ss_pred             hHHHHHHHHHHHhhhhhhhccceehHhHHHHHhhcCCCchHHHHHHHHHHHHHHhhcc
Q 046796           41 CMVYFSTPIAVCGSYAFGSCAGYSSPTQSAIREDIALSLAEYSVFGSILTFGAMIGAI   98 (99)
Q Consensus        41 ~~~~~~~~vaalg~~~~Gy~~G~~s~~l~~l~~~~~is~~~~s~i~Si~~lGa~~Gal   98 (99)
                      ++++....++.++.+..+++....+++.+.++++++++..+.+++.++..++.+++++
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~   65 (405)
T TIGR00891         8 RAQWNAFSAAWLGWLLDAFDFFLVALVLAEVAGEFGLTTVDAASLISAALISRWFGAL   65 (405)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHH
Confidence            4555555666778889999999999999999999999999999999999999888765

>PRK12307 putative sialic acid transporter; Provisional

Probab=95.63  E-value=0.025  Score=42.82  Aligned_cols=58  Identities=16%  Similarity=-0.064  Sum_probs=48.4

Q ss_pred             hHHHHHHHHHHHhhhhhhhccceehHhHHHHHhhcCCCchHHHHHHHHHHHHHHhhcc
Q 046796           41 CMVYFSTPIAVCGSYAFGSCAGYSSPTQSAIREDIALSLAEYSVFGSILTFGAMIGAI   98 (99)
Q Consensus        41 ~~~~~~~~vaalg~~~~Gy~~G~~s~~l~~l~~~~~is~~~~s~i~Si~~lGa~~Gal   98 (99)
                      ++++...+++.++.+..|++....+..++.+++++++++.+.+++.++..+|.++|++
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~   71 (426)
T PRK12307         14 RPQKNALFSAWLGYVFDGFDFMLIFYIMYLIKADLGLTDMEGAFLATAAFIGRPFGGA   71 (426)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHH
Confidence            4444445566677788999999999999999999999999999999999999888764

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=95.61  E-value=0.024  Score=43.57  Aligned_cols=55  Identities=9%  Similarity=-0.120  Sum_probs=45.1

Q ss_pred             HHHHHHHHHhhhhhhhccceehHhHHHHHhhcCCCchHHHHHHHHHHHHHHhhcc
Q 046796           44 YFSTPIAVCGSYAFGSCAGYSSPTQSAIREDIALSLAEYSVFGSILTFGAMIGAI   98 (99)
Q Consensus        44 ~~~~~vaalg~~~~Gy~~G~~s~~l~~l~~~~~is~~~~s~i~Si~~lGa~~Gal   98 (99)
                      +...+++.++.++..+|....+.+.|.++++++++..+.+++.+++.++..+|.+
T Consensus         7 ~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~   61 (412)
T TIGR02332         7 RRLIIFLFILFIFSFLDRINIGFAGLTMGKDLGLSATMFGLAATLFYAAYVICGI   61 (412)
T ss_pred             hHHHHHHHHHHHHHHhhhhhHHHHHHhhHhhcCCCHHHHHHHHHHHHHHHHHHHh
Confidence            3344445556677889998888899999999999999999999999999888764

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>PRK03545 putative arabinose transporter; Provisional

Probab=95.31  E-value=0.027  Score=42.48  Aligned_cols=56  Identities=9%  Similarity=0.149  Sum_probs=41.2

Q ss_pred             HHHHHHHHHHhhhhhhhccceehHhHHHHHhhcCCCchHHHHHHHHHHHHHHhhcc
Q 046796           43 VYFSTPIAVCGSYAFGSCAGYSSPTQSAIREDIALSLAEYSVFGSILTFGAMIGAI   98 (99)
Q Consensus        43 ~~~~~~vaalg~~~~Gy~~G~~s~~l~~l~~~~~is~~~~s~i~Si~~lGa~~Gal   98 (99)
                      .+....+..++.+.+.+......+.+|.+.++++++..+.+|+.+++.++..++.+
T Consensus         7 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~   62 (390)
T PRK03545          7 AWLRVVTLALAAFIFNTTEFVPVGLLSDIAQSFHMQTAQVGLMLTIYAWVVALMSL   62 (390)
T ss_pred             chHHHHHHHHHHHHHHhHHHHHHcchHHHHhHcCCCHHHHHHHHHHHHHHHHHHHH
Confidence            34444444556666666666666677899999999999999999999888776643

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=95.24  E-value=0.031  Score=44.20  Aligned_cols=56  Identities=14%  Similarity=0.208  Sum_probs=50.1

Q ss_pred             HHHHHHHHHHhhhhhhhccceehHhHHHHHhhcCCCchHHHHHHHHHHHHHHhhcc
Q 046796           43 VYFSTPIAVCGSYAFGSCAGYSSPTQSAIREDIALSLAEYSVFGSILTFGAMIGAI   98 (99)
Q Consensus        43 ~~~~~~vaalg~~~~Gy~~G~~s~~l~~l~~~~~is~~~~s~i~Si~~lGa~~Gal   98 (99)
                      .....+..+++.|..|..--.+.+.+|.+.+++++++.+.++.+|++.+|..+|++
T Consensus        11 ~~~~l~aLa~~~F~igttEfv~~gLLp~iA~dl~vs~~~aG~lis~yAl~~ai~ap   66 (394)
T COG2814          11 MWLALLALALAAFAIGTTEFVPVGLLPPIAADLGVSEGAAGQLITAYALGVALGAP   66 (394)
T ss_pred             chHHHHHHHHHHHHHHhHHHHHHhchHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH
Confidence            34555667788999999999999999999999999999999999999999999875

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=95.10  E-value=0.034  Score=43.03  Aligned_cols=49  Identities=16%  Similarity=0.152  Sum_probs=43.2

Q ss_pred             HHHhhhhhhhccceehHhHHHHHhhcCCCchHHHHHHHHHHHHHHhhcc
Q 046796           50 AVCGSYAFGSCAGYSSPTQSAIREDIALSLAEYSVFGSILTFGAMIGAI   98 (99)
Q Consensus        50 aalg~~~~Gy~~G~~s~~l~~l~~~~~is~~~~s~i~Si~~lGa~~Gal   98 (99)
                      .++..+..|+..+..++.+|.++++++++..+.+++.+...+|.+++++
T Consensus         8 ~~~~f~~~G~~~~~~~~l~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~   56 (410)
T TIGR00885         8 ITSLFALWGFANDITNPMVPQFQQAFTLTAFQAALVQSAFYGGYFIMAI   56 (410)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHH
Confidence            3455678899999999999999999999999999999999999988764

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>PRK03699 putative transporter; Provisional

Probab=94.98  E-value=0.04  Score=41.73  Aligned_cols=52  Identities=19%  Similarity=0.109  Sum_probs=42.8

Q ss_pred             HHHHHHhhhhhhhccceehHhHHHHHhhcCCCchHHHHHHHHHHHHHHhhcc
Q 046796           47 TPIAVCGSYAFGSCAGYSSPTQSAIREDIALSLAEYSVFGSILTFGAMIGAI   98 (99)
Q Consensus        47 ~~vaalg~~~~Gy~~G~~s~~l~~l~~~~~is~~~~s~i~Si~~lGa~~Gal   98 (99)
                      ..++.++.++.|++....+..+|.+.++++++..+.+++.++..+|..+|.+
T Consensus         9 ~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~   60 (394)
T PRK03699          9 TWISFLSYALTGALVIVTGMVMGPIAEYFNLPVSSMSNTFTFLNAGILISIF   60 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhHHHHHHhCCCHHHHHHHHHHHHHHHHHHHH
Confidence            3344556778888887778888999999999999999999999999888764

>TIGR00895 2A0115 benzoate transport

Probab=94.88  E-value=0.045  Score=40.17  Aligned_cols=55  Identities=15%  Similarity=0.053  Sum_probs=42.9

Q ss_pred             HHHHHHHHHhhhhhhhccceehHhHHHHHhhcCCCchHHHHHHHHHHHHHHhhcc
Q 046796           44 YFSTPIAVCGSYAFGSCAGYSSPTQSAIREDIALSLAEYSVFGSILTFGAMIGAI   98 (99)
Q Consensus        44 ~~~~~vaalg~~~~Gy~~G~~s~~l~~l~~~~~is~~~~s~i~Si~~lGa~~Gal   98 (99)
                      +...+.+.+..+..|++....+...|.+.++++++..+.+++.++..++.++|++
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   70 (398)
T TIGR00895        16 WRAIILSFLIMLMDGYDLAAMGFAAPAISAEWGLDPVQLGFLFSAGLIGMAFGAL   70 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhHHHHhhccCCCHHHHHHHHHHHHHHHHHHHH
Confidence            3334444455677788888888888989889999999999999999998888764

>PRK03893 putative sialic acid transporter; Provisional

Probab=94.65  E-value=0.082  Score=40.90  Aligned_cols=57  Identities=11%  Similarity=0.030  Sum_probs=46.2

Q ss_pred             HHHHHHHHHHHhhhhhhhccceehHhHHHHHhhcCCCchHHHHHHHHHHHHHHhhcc
Q 046796           42 MVYFSTPIAVCGSYAFGSCAGYSSPTQSAIREDIALSLAEYSVFGSILTFGAMIGAI   98 (99)
Q Consensus        42 ~~~~~~~vaalg~~~~Gy~~G~~s~~l~~l~~~~~is~~~~s~i~Si~~lGa~~Gal   98 (99)
                      +++.......++.+..+++.+..++.++.+.++++++..+.+++.++..++..++++
T Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~   73 (496)
T PRK03893         17 AQWKAFSAAWLGYLLDGFDFVLITLVLTEVQGEFGLTTVQAASLISAAFISRWFGGL   73 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHH
Confidence            334444455667778899999999999999999999999999999999999888754

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=94.62  E-value=0.095  Score=40.02  Aligned_cols=55  Identities=9%  Similarity=0.023  Sum_probs=35.9

Q ss_pred             HHHHHHHHHhhhhhhhccceehHhHHHHHhhcCCCchHHHHHHHHHHHHHHhhcc
Q 046796           44 YFSTPIAVCGSYAFGSCAGYSSPTQSAIREDIALSLAEYSVFGSILTFGAMIGAI   98 (99)
Q Consensus        44 ~~~~~vaalg~~~~Gy~~G~~s~~l~~l~~~~~is~~~~s~i~Si~~lGa~~Gal   98 (99)
                      +...++..++.+..++..-...+.+|.+.++++.+..+.++..++..++..++++
T Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~   73 (394)
T PRK10213         19 WSAVFSVAFCVACLIIVEFLPVSLLTPMAQDLGISEGVAGQSVTVTAFVAMFASL   73 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH
Confidence            3333333444444444332333456778889999999999999999888887654

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=94.59  E-value=0.014  Score=44.69  Aligned_cols=52  Identities=27%  Similarity=0.321  Sum_probs=38.7

Q ss_pred             HHHHHhhhhhhhccceehHhHHHHH--hhcCC---------CchHHHHHHHHHHHHHHhhccC
Q 046796           48 PIAVCGSYAFGSCAGYSSPTQSAIR--EDIAL---------SLAEYSVFGSILTFGAMIGAIT   99 (99)
Q Consensus        48 ~vaalg~~~~Gy~~G~~s~~l~~l~--~~~~i---------s~~~~s~i~Si~~lGa~~Gal~   99 (99)
                      ++++++++.+|||.++++...+...  ..+..         ++.+.+++.++..+|+++|+++
T Consensus         3 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~G~~~   65 (451)
T PF00083_consen    3 LIASLGGFLFGYDLGLIGSFASLLGFLQFFGWSSSESSCEKSSLLSSLLTSSFFIGAIVGALI   65 (451)
T ss_pred             EeeHHHHHHHHHHHHHHhhHHhhhhhhhccccccccccccchHHHHHHHHHHHHhhhcccccc
Confidence            4578889999999999988875433  11111         1235689999999999999874

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=94.34  E-value=0.052  Score=41.62  Aligned_cols=51  Identities=12%  Similarity=0.063  Sum_probs=44.3

Q ss_pred             HHHHHhhhhhhhccceehHhHHHHHhhcCCCchHHHHHHHHHHHHHHhhcc
Q 046796           48 PIAVCGSYAFGSCAGYSSPTQSAIREDIALSLAEYSVFGSILTFGAMIGAI   98 (99)
Q Consensus        48 ~vaalg~~~~Gy~~G~~s~~l~~l~~~~~is~~~~s~i~Si~~lGa~~Gal   98 (99)
                      ....++.+..++|....+..+|.+.++++.+..+.+|+.+++.++.+++.+
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~   55 (485)
T TIGR00711         5 IVLMLGTFMAVLDSTIVNVAIPTIAGDLGSSLSQVQWVITSYMLANAISIP   55 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHHHH
Confidence            345567788999999999999999999999999999999999999888764

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=94.34  E-value=0.074  Score=41.90  Aligned_cols=55  Identities=11%  Similarity=-0.078  Sum_probs=46.8

Q ss_pred             HHHHHHHHHHhhhhhhhccceehHhHHHHHhhcCCCchHHHHHHHHHHHHHHhhc
Q 046796           43 VYFSTPIAVCGSYAFGSCAGYSSPTQSAIREDIALSLAEYSVFGSILTFGAMIGA   97 (99)
Q Consensus        43 ~~~~~~vaalg~~~~Gy~~G~~s~~l~~l~~~~~is~~~~s~i~Si~~lGa~~Ga   97 (99)
                      .+...+..+++.++...|...++.++|.+.++++.+..+.+|+.+.+.++..++.
T Consensus         4 ~~~~~~~~~~~~~~~~ld~tiv~~a~p~i~~~l~~s~~~~~~~~~~~~l~~~~~~   58 (495)
T PRK14995          4 QWLTLVIIVLVYIPVAIDATVLHVAAPTLSMTLGASGNELLWIIDIYSLVMAGMV   58 (495)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHhHHHHHHHHHHHHHHHHH
Confidence            4455666778889999999999999999999999999999999999988876543

>PRK11663 regulatory protein UhpC; Provisional

Probab=94.19  E-value=0.068  Score=41.20  Aligned_cols=53  Identities=9%  Similarity=0.059  Sum_probs=40.7

Q ss_pred             HHHHHHHhhhhhhhccceehHhHHHHHhhcCCCchHHHHHHHHHHHHHHhhcc
Q 046796           46 STPIAVCGSYAFGSCAGYSSPTQSAIREDIALSLAEYSVFGSILTFGAMIGAI   98 (99)
Q Consensus        46 ~~~vaalg~~~~Gy~~G~~s~~l~~l~~~~~is~~~~s~i~Si~~lGa~~Gal   98 (99)
                      ...+..++.+.+.++....+..+|.+.++++++..+.+++.++..++..++.+
T Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~   76 (434)
T PRK11663         24 ILITMYLGYALFYFTRKSFNAAMPEMLADLGLSRSDIGLLATLFYITYGVSKF   76 (434)
T ss_pred             HHHHHHHHHHHHHHhhhhHHHhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHh
Confidence            33344455566666666667788888889999999999999999999888764

>PRK03633 putative MFS family transporter protein; Provisional

Probab=94.02  E-value=0.1  Score=39.31  Aligned_cols=48  Identities=15%  Similarity=0.181  Sum_probs=42.5

Q ss_pred             HHhhhhhhhccceehHhHHHHHhhcCCCchHHHHHHHHHHHHHHhhcc
Q 046796           51 VCGSYAFGSCAGYSSPTQSAIREDIALSLAEYSVFGSILTFGAMIGAI   98 (99)
Q Consensus        51 alg~~~~Gy~~G~~s~~l~~l~~~~~is~~~~s~i~Si~~lGa~~Gal   98 (99)
                      .++.++++...+..++.+|.+.++++++..+.+++.++..+|..++++
T Consensus        12 ~~~~~~~~~~~~~~~~~lp~~~~~~~~s~~~~G~~~s~~~l~~~~~~~   59 (381)
T PRK03633         12 LCGLLLLTLAIAVLNTLVPLWLAQEHLPTWQVGVVSSSYFTGNLVGTL   59 (381)
T ss_pred             HHHHHHHHHhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH
Confidence            356778899999999999999999999999999999999999988765

>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters

Probab=93.62  E-value=0.076  Score=33.52  Aligned_cols=37  Identities=24%  Similarity=0.294  Sum_probs=33.2

Q ss_pred             ceehHhHHHHHhhcCCCchHHHHHHHHHHHHHHhhcc
Q 046796           62 GYSSPTQSAIREDIALSLAEYSVFGSILTFGAMIGAI   98 (99)
Q Consensus        62 G~~s~~l~~l~~~~~is~~~~s~i~Si~~lGa~~Gal   98 (99)
                      -..+|.+|.++++.+++..+.+|+.|.-++|-++|++
T Consensus         9 FayTplLP~M~~~~~ls~~~ag~lasaNy~GYL~GAl   45 (85)
T PF06779_consen    9 FAYTPLLPLMQADGGLSLSQAGWLASANYLGYLVGAL   45 (85)
T ss_pred             HHHHhHhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH
Confidence            3447888999999999999999999999999999986

Note that many members are hypothetical proteins.

>PRK10091 MFS transport protein AraJ; Provisional

Probab=92.86  E-value=0.13  Score=38.75  Aligned_cols=48  Identities=17%  Similarity=0.280  Sum_probs=41.4

Q ss_pred             HHhhhhhhhccceehHhHHHHHhhcCCCchHHHHHHHHHHHHHHhhcc
Q 046796           51 VCGSYAFGSCAGYSSPTQSAIREDIALSLAEYSVFGSILTFGAMIGAI   98 (99)
Q Consensus        51 alg~~~~Gy~~G~~s~~l~~l~~~~~is~~~~s~i~Si~~lGa~~Gal   98 (99)
                      .++.+..|+......+.+|.+.++++.+..+.+++.++..+|.++|++
T Consensus         9 ~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~s~~~~~~~~~~~   56 (382)
T PRK10091          9 ALGTFGLGMAEFGIMGVLTELAHDVGISIPAAGHMISYYALGVVVGAP   56 (382)
T ss_pred             HHHHHHHHhhHHHHHhChHHHHHHcCCCHHHHhHHHHHHHHHHHHHHH
Confidence            446677888887888888999999999999999999999999998865

>TIGR00805 oat sodium-independent organic anion transporter

Probab=92.36  E-value=0.045  Score=45.14  Aligned_cols=46  Identities=13%  Similarity=0.148  Sum_probs=38.9

Q ss_pred             hhhhhhhccceehHhHHHHHhhcCCCchHHHHHHHHHHHHHHhhcc
Q 046796           53 GSYAFGSCAGYSSPTQSAIREDIALSLAEYSVFGSILTFGAMIGAI   98 (99)
Q Consensus        53 g~~~~Gy~~G~~s~~l~~l~~~~~is~~~~s~i~Si~~lGa~~Gal   98 (99)
                      ..+.-+...|+.+++++.++++|+++..+.++++|.+.+|.+++++
T Consensus        41 ~~~~~~~~~g~~~~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i   86 (633)
T TIGR00805        41 AQLQGLLYNGLVNSSLTTIERRFKLSTSSSGLINGSYEIGNLLLII   86 (633)
T ss_pred             HHHHHHHHHHHHHhhchhhhhhhCCCCCcceeeeehhhHHHHHHHH
Confidence            4455556678899999999999999999999999999999887754

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=92.31  E-value=0.22  Score=36.64  Aligned_cols=44  Identities=11%  Similarity=0.061  Sum_probs=35.5

Q ss_pred             hhhhhccceehHhHHHHHhhcCCCchHHHHHHHHHHHHHHhhcc
Q 046796           55 YAFGSCAGYSSPTQSAIREDIALSLAEYSVFGSILTFGAMIGAI   98 (99)
Q Consensus        55 ~~~Gy~~G~~s~~l~~l~~~~~is~~~~s~i~Si~~lGa~~Gal   98 (99)
                      +..+.......+.+|.+.+++++++.+.+++.++..++.+++.+
T Consensus        15 ~~~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~~~~   58 (385)
T TIGR00710        15 ILGPLGIDMYLPAFPEIAADLSTPASIVQMTLTLYLLGFAAGQL   58 (385)
T ss_pred             HHHHHHHHHhcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHH
Confidence            33445556667788889999999999999999999999888764

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=92.15  E-value=0.25  Score=37.30  Aligned_cols=57  Identities=14%  Similarity=-0.030  Sum_probs=45.4

Q ss_pred             HHHHHHHHHHHhhhhhhhccceehHhHHHHHhhcCCCchHHHHHHHHHHHHHHhhcc
Q 046796           42 MVYFSTPIAVCGSYAFGSCAGYSSPTQSAIREDIALSLAEYSVFGSILTFGAMIGAI   98 (99)
Q Consensus        42 ~~~~~~~vaalg~~~~Gy~~G~~s~~l~~l~~~~~is~~~~s~i~Si~~lGa~~Gal   98 (99)
                      ..++..++..++.+...++.+...+.++.+.++++++..+.++..+++.++..++.+
T Consensus        10 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~   66 (406)
T PRK15402         10 QALLFPLCLVLFEFATYIANDMIQPGMLAVVEDFNAGAEWVPTSMTAYLAGGMFLQW   66 (406)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhhHhcchHHHHHHhCCCHHHHHHHHHHHHHHHHHHHH
Confidence            345666666777777777777778888888899999999999999999998877653

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=92.08  E-value=0.43  Score=36.28  Aligned_cols=37  Identities=11%  Similarity=0.087  Sum_probs=32.4

Q ss_pred             ceehHhHHHHHhhcCCCchHHHHHHHHHHHHHHhhcc
Q 046796           62 GYSSPTQSAIREDIALSLAEYSVFGSILTFGAMIGAI   98 (99)
Q Consensus        62 G~~s~~l~~l~~~~~is~~~~s~i~Si~~lGa~~Gal   98 (99)
                      -.+++.+|.++++++++..+.+|+.+++.+|..++++
T Consensus        26 ~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~~~~l~~~   62 (393)
T PRK09705         26 TSVGPLLPQLRQASGMSFSVAALLTALPVVTMGGLAL   62 (393)
T ss_pred             hccchhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhh
Confidence            4556888999999999999999999999999888765

>PRK10133 L-fucose transporter; Provisional

Probab=92.03  E-value=0.39  Score=37.50  Aligned_cols=48  Identities=13%  Similarity=0.157  Sum_probs=41.0

Q ss_pred             HHhhhhhhhccceehHhHHHHHhhcCCCchHHHHHHHHHHHHHHhhcc
Q 046796           51 VCGSYAFGSCAGYSSPTQSAIREDIALSLAEYSVFGSILTFGAMIGAI   98 (99)
Q Consensus        51 alg~~~~Gy~~G~~s~~l~~l~~~~~is~~~~s~i~Si~~lGa~~Gal   98 (99)
                      .+..+.+|++....++.+|.+++++++++.+.+++.+.+.+|..++++
T Consensus        32 ~~~~~~~~~~~~~~~~~~p~i~~~~~~s~~~~gl~~~~~~~g~~i~~~   79 (438)
T PRK10133         32 CSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPI   79 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHH
Confidence            344577888888888888999999999999999999999999988764

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=91.91  E-value=0.45  Score=36.59  Aligned_cols=58  Identities=9%  Similarity=-0.231  Sum_probs=37.9

Q ss_pred             hHHHHHHHHHHHhhhhhhhccceehHhHHHHHhhcC---CCchHHHHHH---HHHHHHHHhhcc
Q 046796           41 CMVYFSTPIAVCGSYAFGSCAGYSSPTQSAIREDIA---LSLAEYSVFG---SILTFGAMIGAI   98 (99)
Q Consensus        41 ~~~~~~~~vaalg~~~~Gy~~G~~s~~l~~l~~~~~---is~~~~s~i~---Si~~lGa~~Gal   98 (99)
                      .+.+...+.+.++.++.+||....+...+.+.+++.   .+..+.+++.   ++..++.++|++
T Consensus        18 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~   81 (432)
T PRK10406         18 RRRIWAIVGASSGNLVEWFDFYVYSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGW   81 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence            455555556678888999999999999899888774   4444433333   344444445553

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=91.90  E-value=0.46  Score=36.99  Aligned_cols=44  Identities=14%  Similarity=0.093  Sum_probs=35.1

Q ss_pred             hhhhhccceehHhHHHHHhhcCCCchHHHHHHHHHHHHHHhhcc
Q 046796           55 YAFGSCAGYSSPTQSAIREDIALSLAEYSVFGSILTFGAMIGAI   98 (99)
Q Consensus        55 ~~~Gy~~G~~s~~l~~l~~~~~is~~~~s~i~Si~~lGa~~Gal   98 (99)
                      ++.-.+-...+.+.|.+.++++++..+.+|+.+++.++..++.+
T Consensus        39 ~~~y~~r~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~   82 (467)
T PRK09556         39 LTMYLIRKNFKAAQNDMISTYGLSTTELGMIGLGFSITYGVGKT   82 (467)
T ss_pred             HHHHHHhcChhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHh
Confidence            33334666677788999999999999999999999998877654

>PRK10504 putative transporter; Provisional

Probab=91.37  E-value=0.41  Score=36.87  Aligned_cols=49  Identities=4%  Similarity=-0.044  Sum_probs=40.2

Q ss_pred             HHHhhhhhhhccceehHhHHHHHhhcCCCchHHHHHHHHHHHHHHhhcc
Q 046796           50 AVCGSYAFGSCAGYSSPTQSAIREDIALSLAEYSVFGSILTFGAMIGAI   98 (99)
Q Consensus        50 aalg~~~~Gy~~G~~s~~l~~l~~~~~is~~~~s~i~Si~~lGa~~Gal   98 (99)
                      .+++.++.+++.+..++.+|.+.++++++..+.+|+.+.+.++..++.+
T Consensus        15 ~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~   63 (471)
T PRK10504         15 VAFGFFMQSLDTTIVNTALPSMAQSLGESPLHMHMVIVSYVLTVAVMLP   63 (471)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHH
Confidence            3456677888888888889998889999999999999998888777653

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=91.15  E-value=0.55  Score=36.92  Aligned_cols=36  Identities=17%  Similarity=0.332  Sum_probs=29.7

Q ss_pred             eehHhHHHHHhhcCCCchHHHHHHHHHHHHHHhhcc
Q 046796           63 YSSPTQSAIREDIALSLAEYSVFGSILTFGAMIGAI   98 (99)
Q Consensus        63 ~~s~~l~~l~~~~~is~~~~s~i~Si~~lGa~~Gal   98 (99)
                      ..++.+|.+.++++++..+.+++.++..+|..+|.+
T Consensus        54 ~~~~~~~~l~~~~gls~~~~g~~~~~~~~~~~~~~~   89 (476)
T PLN00028         54 AAAPLLPIIRDNLNLTKSDIGNAGIASVSGSIFSRL   89 (476)
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH
Confidence            345677889999999999999999988888887754

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=90.55  E-value=0.41  Score=39.26  Aligned_cols=60  Identities=10%  Similarity=-0.023  Sum_probs=49.3

Q ss_pred             CchHHHHHHHHHHHhhhhhhhccceehHhHHHHHhhc-C-------CCchHHHHHHHHHHHHHHhhcc
Q 046796           39 NPCMVYFSTPIAVCGSYAFGSCAGYSSPTQSAIREDI-A-------LSLAEYSVFGSILTFGAMIGAI   98 (99)
Q Consensus        39 ~~~~~~~~~~vaalg~~~~Gy~~G~~s~~l~~l~~~~-~-------is~~~~s~i~Si~~lGa~~Gal   98 (99)
                      ..|+++....++.+|-|..+||+..++.+.+-+..-| +       +++...+.+.++..+|.++|=|
T Consensus        35 ~qw~~fk~i~iAG~GfftDsYDlF~I~lVt~il~~lY~~~~~~~g~~ps~i~~~Vn~~A~vGti~GQl  102 (538)
T KOG0252|consen   35 LQWKHFKAIIIAGMGFFTDSYDLFSISLVTKILGYLYYHGDESGGHYPSGVLALVNAAALVGTIFGQL  102 (538)
T ss_pred             hhHHHHHHHHHhhhhhcccchhhhhHHHHHHHHHHHhcCCCCCCCcCCchHHHHHHHHHHHHHHHHHH
Confidence            4689999999999999999999999999998776522 1       4456678899999999988844

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=90.47  E-value=1.2  Score=33.35  Aligned_cols=45  Identities=7%  Similarity=0.088  Sum_probs=34.6

Q ss_pred             hhhhhhccceehHhHHH-HHhhcCCCchHHHHHHHHHHHHHHhhcc
Q 046796           54 SYAFGSCAGYSSPTQSA-IREDIALSLAEYSVFGSILTFGAMIGAI   98 (99)
Q Consensus        54 ~~~~Gy~~G~~s~~l~~-l~~~~~is~~~~s~i~Si~~lGa~~Gal   98 (99)
                      .+..+...+...+.++. ++++++.++.+.+++.++..++..++.+
T Consensus        24 ~~~~~~~~~~~~~~l~~~i~~~~g~s~~~~g~~~~~~~~~~~i~~~   69 (399)
T PRK05122         24 TFISYLTIGLPLAVLPGYVHDQLGFSAFLAGLVISLQYLATLLSRP   69 (399)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhch
Confidence            34445555666777775 6778999999999999999999888754

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=89.92  E-value=0.28  Score=35.60  Aligned_cols=43  Identities=7%  Similarity=0.147  Sum_probs=34.6

Q ss_pred             hhhhhccceehHhHHHHHhhcCCCchHHHHHHHHHHHHHHhhcc
Q 046796           55 YAFGSCAGYSSPTQSAIREDIALSLAEYSVFGSILTFGAMIGAI   98 (99)
Q Consensus        55 ~~~Gy~~G~~s~~l~~l~~~~~is~~~~s~i~Si~~lGa~~Gal   98 (99)
                      +.+|+... .++.+|.+++++++++.+.+++.++..+|..++++
T Consensus        14 ~~~~~~~~-~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~   56 (377)
T TIGR00890        14 FTSGYVYT-WTLLAPPLGRYFGVGVTAVAIWFTLLLIGLAMSMP   56 (377)
T ss_pred             HHhhHHhh-hhhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhh
Confidence            45555443 36677889999999999999999999999988865

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=89.88  E-value=0.62  Score=35.82  Aligned_cols=54  Identities=13%  Similarity=0.017  Sum_probs=43.6

Q ss_pred             HHHHHHHHhhhhhhhccceehHhHHHHHhhcCCCchHHHHHHHHHHHHHHhhcc
Q 046796           45 FSTPIAVCGSYAFGSCAGYSSPTQSAIREDIALSLAEYSVFGSILTFGAMIGAI   98 (99)
Q Consensus        45 ~~~~vaalg~~~~Gy~~G~~s~~l~~l~~~~~is~~~~s~i~Si~~lGa~~Gal   98 (99)
                      ..+....+.++..........+.+|.+.++++.+..+.+|..+++.+|..+|.+
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~p~l~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~   69 (413)
T PRK15403         16 FFPMALILYDFAAYLTTDLIQPGIINVVRDFNADVSLAPASVSLYLAGGMALQW   69 (413)
T ss_pred             HHHHHHHHHHHHHHHHHHhhccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHH
Confidence            333444666777777888888999999999999999999999999999887754

>PRK11043 putative transporter; Provisional

Probab=88.48  E-value=0.88  Score=34.23  Aligned_cols=40  Identities=23%  Similarity=0.248  Sum_probs=32.8

Q ss_pred             hccceehHhHHHHHhhcCCCchHHHHHHHHHHHHHHhhcc
Q 046796           59 SCAGYSSPTQSAIREDIALSLAEYSVFGSILTFGAMIGAI   98 (99)
Q Consensus        59 y~~G~~s~~l~~l~~~~~is~~~~s~i~Si~~lGa~~Gal   98 (99)
                      +..+...|..+.+++++++++.+.+++.++..++..+|.+
T Consensus        20 ~~~~~~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~   59 (401)
T PRK11043         20 LATDMYLPAFKAIQADLQTSASAVSASLSLFLAGFALGQL   59 (401)
T ss_pred             HHHHHHHhhHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
Confidence            3445556777888889999999999999999999888764

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=88.26  E-value=0.67  Score=33.62  Aligned_cols=44  Identities=16%  Similarity=0.104  Sum_probs=35.5

Q ss_pred             hhhhhccceehHhHHHHHhhcCCCchHHHHHHHHHHHHHHhhcc
Q 046796           55 YAFGSCAGYSSPTQSAIREDIALSLAEYSVFGSILTFGAMIGAI   98 (99)
Q Consensus        55 ~~~Gy~~G~~s~~l~~l~~~~~is~~~~s~i~Si~~lGa~~Gal   98 (99)
                      +++.++....+...|.+.++++++..+.+++.++..++.+++++
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~   48 (379)
T TIGR00881         5 AAYYLVRKNFALAMPYLVEEIGLSKTDLGLLLSSFSIAYGISKF   48 (379)
T ss_pred             hHHHHhHHhhhhhhHHHHHHhCCCHhHHHHHHHHHHHHHHhhhh
Confidence            34455556667777888889999999999999999999988765

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=87.85  E-value=1.1  Score=33.58  Aligned_cols=37  Identities=5%  Similarity=0.065  Sum_probs=30.9

Q ss_pred             ceehHhHHHHHhhcCCCchHHHHHHHHHHHHHHhhcc
Q 046796           62 GYSSPTQSAIREDIALSLAEYSVFGSILTFGAMIGAI   98 (99)
Q Consensus        62 G~~s~~l~~l~~~~~is~~~~s~i~Si~~lGa~~Gal   98 (99)
                      +...+.+|.+.++++++..+.+++.++..++..++.+
T Consensus        25 ~~~~p~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~   61 (394)
T PRK11652         25 TIYVPAIADMARDLNVREGAVQAVMAAYLLTYGLSQL   61 (394)
T ss_pred             HHHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHH
Confidence            4455677888889999999999999999999888754

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=87.38  E-value=0.56  Score=33.84  Aligned_cols=47  Identities=17%  Similarity=0.178  Sum_probs=37.9

Q ss_pred             HhhhhhhhccceehHhHH-HHHhhcCCCchHHHHHHHHHHHHHHhhcc
Q 046796           52 CGSYAFGSCAGYSSPTQS-AIREDIALSLAEYSVFGSILTFGAMIGAI   98 (99)
Q Consensus        52 lg~~~~Gy~~G~~s~~l~-~l~~~~~is~~~~s~i~Si~~lGa~~Gal   98 (99)
                      ++.++.++..+...+.++ .+.++++.+..+.+|+.++..++..++++
T Consensus         3 l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~   50 (352)
T PF07690_consen    3 LAFFLSGFGFSIISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSP   50 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHH
Confidence            345566667777788888 78889999999999999999998887654

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=86.94  E-value=1.2  Score=35.07  Aligned_cols=53  Identities=11%  Similarity=-0.073  Sum_probs=36.6

Q ss_pred             HHHHHHHhhhhhhhccceehHhHHHHHhhcCCCchH-HHHH-----HHHHHHHHHhhcc
Q 046796           46 STPIAVCGSYAFGSCAGYSSPTQSAIREDIALSLAE-YSVF-----GSILTFGAMIGAI   98 (99)
Q Consensus        46 ~~~vaalg~~~~Gy~~G~~s~~l~~l~~~~~is~~~-~s~i-----~Si~~lGa~~Gal   98 (99)
                      ..+++.+|.++.+||.+.++.+.+.+.+.+..+.++ .+++     .++..+|..+|++
T Consensus        17 ~~~~~~~g~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~   75 (490)
T PRK10642         17 AITAASLGNAMEWFDFGVYGFVAYALGKVFFPGADPSVQMIAALATFSVPFLIRPLGGL   75 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344567788999999999999999888877543322 2232     3666677777654

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=85.40  E-value=1.8  Score=30.88  Aligned_cols=48  Identities=25%  Similarity=0.417  Sum_probs=39.1

Q ss_pred             HHhhhhhhhccceehHhHHHHHhhcCCCchHHHHHHHHHHHHHHhhcc
Q 046796           51 VCGSYAFGSCAGYSSPTQSAIREDIALSLAEYSVFGSILTFGAMIGAI   98 (99)
Q Consensus        51 alg~~~~Gy~~G~~s~~l~~l~~~~~is~~~~s~i~Si~~lGa~~Gal   98 (99)
                      .++.+..+++.+..++..+.+.++++.+..+.+++.++..++.+++++
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   52 (352)
T cd06174           5 FLGFFLSGLDRGLLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSL   52 (352)
T ss_pred             HHHHHHHHHhhhhhHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH
Confidence            345567777778888888888888888999999999999999888764

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>TIGR00893 2A0114 d-galactonate transporter

Probab=85.12  E-value=0.82  Score=33.06  Aligned_cols=40  Identities=25%  Similarity=0.348  Sum_probs=33.0

Q ss_pred             hccceehHhHHHHHhhcCCCchHHHHHHHHHHHHHHhhcc
Q 046796           59 SCAGYSSPTQSAIREDIALSLAEYSVFGSILTFGAMIGAI   98 (99)
Q Consensus        59 y~~G~~s~~l~~l~~~~~is~~~~s~i~Si~~lGa~~Gal   98 (99)
                      +|....+.+.|.++++++++..+.+++.++..++.+++++
T Consensus         8 ~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~   47 (399)
T TIGR00893         8 LDRANLSFAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQF   47 (399)
T ss_pred             HHHHhhhHhHHHHHHhhCCChhhHHHHHHHHHHHHHHHHH
Confidence            4555667777888889999999999999999999888764

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=84.83  E-value=0.86  Score=34.85  Aligned_cols=36  Identities=25%  Similarity=0.233  Sum_probs=30.5

Q ss_pred             eehHhHHHHHhhcCCCchHHHHHHHHHHHHHHhhcc
Q 046796           63 YSSPTQSAIREDIALSLAEYSVFGSILTFGAMIGAI   98 (99)
Q Consensus        63 ~~s~~l~~l~~~~~is~~~~s~i~Si~~lGa~~Gal   98 (99)
                      ..++.+|.++++++++..+.+|+.+++.+|..++.+
T Consensus         9 ~~~~~lp~i~~~~~~s~~~~g~~~s~~~~g~~i~~~   44 (368)
T TIGR00903         9 TFSPVLSLVAEDIDVSKEELGLLAITYPAAFLALTI   44 (368)
T ss_pred             HHHhhHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHH
Confidence            346778889999999999999999999998887754

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=84.79  E-value=0.28  Score=39.95  Aligned_cols=41  Identities=17%  Similarity=0.344  Sum_probs=0.0

Q ss_pred             hhccceehHhHHHHHhhcCCCchHHHHHHHHHHHHHHhhcc
Q 046796           58 GSCAGYSSPTQSAIREDIALSLAEYSVFGSILTFGAMIGAI   98 (99)
Q Consensus        58 Gy~~G~~s~~l~~l~~~~~is~~~~s~i~Si~~lGa~~Gal   98 (99)
                      +...|+...++..+++.|++++.+.|++.+.+-+|.++..+
T Consensus        16 ~~~~g~~~~~lttiErRF~l~S~~~G~i~s~~di~~~~~~~   56 (539)
T PF03137_consen   16 MMVSGYVNSSLTTIERRFGLSSSQSGLISSSYDIGSLVVVL   56 (539)
T ss_dssp             -----------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH
Confidence            77778888888899999999999999999999999887654

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=84.48  E-value=2  Score=35.05  Aligned_cols=63  Identities=8%  Similarity=0.072  Sum_probs=42.3

Q ss_pred             CCCCCCCCchHHHHHHHHHHHhhhhhhhccceehHhH-HHHHh-hcCCCchHHHHHHHHHHHHHHhhccC
Q 046796           32 RTNNKKVNPCMVYFSTPIAVCGSYAFGSCAGYSSPTQ-SAIRE-DIALSLAEYSVFGSILTFGAMIGAIT   99 (99)
Q Consensus        32 ~~~~~~~~~~~~~~~~~vaalg~~~~Gy~~G~~s~~l-~~l~~-~~~is~~~~s~i~Si~~lGa~~Gal~   99 (99)
                      +++.+  .+||.+..+.+   -+++.+...++..+.. |++++ |.+-+....||++++..+|..+++++
T Consensus        26 ~~~~~--t~wrsi~l~~~---~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~ffG~viaa~slg~~i~~li   90 (488)
T KOG2325|consen   26 LDERK--TNWRSIYLALL---NSFLVAVQFSIYLTSMWPYLQKLDPTATATFFGLVIAASSLGHAIFSLI   90 (488)
T ss_pred             ccccC--CchHhHHHHHH---HHHHHhhhheEEEeecchhhhhcCCCCCcchhhHHHHHHHHHHHhcchh
Confidence            44444  44666555444   4567777777776665 66654 44455667799999999999998763

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=83.80  E-value=1.5  Score=32.13  Aligned_cols=35  Identities=23%  Similarity=0.324  Sum_probs=29.4

Q ss_pred             ehHhHHH-HHhhcCCCchHHHHHHHHHHHHHHhhcc
Q 046796           64 SSPTQSA-IREDIALSLAEYSVFGSILTFGAMIGAI   98 (99)
Q Consensus        64 ~s~~l~~-l~~~~~is~~~~s~i~Si~~lGa~~Gal   98 (99)
                      .++.+|. ++++++++..+.+|+.++..++..++++
T Consensus        20 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~   55 (366)
T TIGR00886        20 FSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRI   55 (366)
T ss_pred             hHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHH
Confidence            4566674 8889999999999999999999888764

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=83.40  E-value=2.8  Score=32.41  Aligned_cols=45  Identities=11%  Similarity=-0.003  Sum_probs=32.0

Q ss_pred             hhhhhhhccceehHhHHHHHhhcCCCchHHHHHHHHHHHHHHhhcc
Q 046796           53 GSYAFGSCAGYSSPTQSAIREDIALSLAEYSVFGSILTFGAMIGAI   98 (99)
Q Consensus        53 g~~~~Gy~~G~~s~~l~~l~~~~~is~~~~s~i~Si~~lGa~~Gal   98 (99)
                      +...+..+....+..+|.+.++ +++..+.+++.++..++..++.+
T Consensus        37 ~~~~~~~~~~~~~~~~p~l~~~-g~s~~~~g~~~~~~~i~~~~~~~   81 (452)
T PRK11273         37 GYAAYYLVRKNFALAMPYLVEQ-GFSRGDLGFALSGISIAYGFSKF   81 (452)
T ss_pred             HHHHHHHHHHHHHHhhHHHHHc-CCCHHHHHHHHHHHHHHHHHHHh
Confidence            3333343333345566778777 99999999999999999888764

>TIGR00896 CynX cyanate transporter

Probab=82.75  E-value=1.5  Score=32.46  Aligned_cols=36  Identities=14%  Similarity=0.173  Sum_probs=31.6

Q ss_pred             eehHhHHHHHhhcCCCchHHHHHHHHHHHHHHhhcc
Q 046796           63 YSSPTQSAIREDIALSLAEYSVFGSILTFGAMIGAI   98 (99)
Q Consensus        63 ~~s~~l~~l~~~~~is~~~~s~i~Si~~lGa~~Gal   98 (99)
                      ..++.+|.++++++++..+.+|+.++..++..++++
T Consensus        18 ~~~~~lp~l~~~~~~s~~~~g~~~s~~~~~~~~~~~   53 (355)
T TIGR00896        18 SVGPLLPQIRSALGMSFSVAGLLTALPVLCFAVLAP   53 (355)
T ss_pred             cCcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHH
Confidence            446788999999999999999999999999988865

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>PRK15075 citrate-proton symporter; Provisional

Probab=82.55  E-value=2.2  Score=32.77  Aligned_cols=38  Identities=11%  Similarity=-0.109  Sum_probs=31.4

Q ss_pred             HHHHHHhhhhhhhccceehHhHHHHHhhcCCCchHHHH
Q 046796           47 TPIAVCGSYAFGSCAGYSSPTQSAIREDIALSLAEYSV   84 (99)
Q Consensus        47 ~~vaalg~~~~Gy~~G~~s~~l~~l~~~~~is~~~~s~   84 (99)
                      .....++.++..||....+...|.+.++++.++.+.++
T Consensus        17 ~~~~~~~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~   54 (434)
T PRK15075         17 ILRVTSGNFLEMFDFFLFGFYATAIAKTFFPAGNEFAS   54 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHH
Confidence            44556688999999999999999999999888776543

>PRK12382 putative transporter; Provisional

Probab=80.26  E-value=6.5  Score=29.42  Aligned_cols=38  Identities=11%  Similarity=0.166  Sum_probs=30.1

Q ss_pred             cceehHhHHH-HHhhcCCCchHHHHHHHHHHHHHHhhcc
Q 046796           61 AGYSSPTQSA-IREDIALSLAEYSVFGSILTFGAMIGAI   98 (99)
Q Consensus        61 ~G~~s~~l~~-l~~~~~is~~~~s~i~Si~~lGa~~Gal   98 (99)
                      .+...+.+|. ++++++++..+.+++.++..++..++++
T Consensus        31 ~~~~~p~l~~~l~~~lg~s~~~~g~~~s~~~~~~~i~~~   69 (392)
T PRK12382         31 VGLPLPVIPLFVHHDLGFGNTMVGIAVGIQFLATVLTRG   69 (392)
T ss_pred             HHHHhhhhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHhh
Confidence            4555666664 6778999999999999999999887654

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=80.21  E-value=4.1  Score=30.49  Aligned_cols=41  Identities=17%  Similarity=0.061  Sum_probs=31.2

Q ss_pred             hhhhccceehHhHHHHHhhcCCCchHHHHHHHHHHHHHHhhcc
Q 046796           56 AFGSCAGYSSPTQSAIREDIALSLAEYSVFGSILTFGAMIGAI   98 (99)
Q Consensus        56 ~~Gy~~G~~s~~l~~l~~~~~is~~~~s~i~Si~~lGa~~Gal   98 (99)
                      ..|++...  +.+|.+.++++.++.+.+|+.+++.++..++.+
T Consensus        16 ~~~~~~~~--~~lp~~~~~~~~s~~~~~~~~~~~~~~~~~~~~   56 (392)
T PRK10473         16 PAGIDMYL--VGLPRIAADLNASEAQLHIAFSVYLAGMAAAML   56 (392)
T ss_pred             HHHHHHHh--hhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHH
Confidence            34444333  567888889999999999999999988877654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	99
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	98.49
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	96.13
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	93.79
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	93.43

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=98.49  E-value=3.4e-08  Score=74.06  Aligned_cols=59  Identities=19%  Similarity=0.223  Sum_probs=49.4

Q ss_pred             chHHHHHHHHHHHhhhhhhhccceehHhHHHHHhhcC----C----CchHHHHHHHHHHHHHHhhcc
Q 046796           40 PCMVYFSTPIAVCGSYAFGSCAGYSSPTQSAIREDIA----L----SLAEYSVFGSILTFGAMIGAI   98 (99)
Q Consensus        40 ~~~~~~~~~vaalg~~~~Gy~~G~~s~~l~~l~~~~~----i----s~~~~s~i~Si~~lGa~~Gal   98 (99)
                      +++++.+++++++|++++|||+++++++++.+++.+.    .    ++.+.+|++|++.+|+++|++
T Consensus         7 ~~y~~~i~~~a~lg~~~~Gyd~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~   73 (491)
T 4gc0_A            7 SSYIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGA   73 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHGGGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred             hHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHH
Confidence            3567888899999999999999999999998877543    2    234579999999999999986

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=96.13  E-value=0.005  Score=44.88  Aligned_cols=52  Identities=12%  Similarity=0.143  Sum_probs=44.4

Q ss_pred             HHHHHHhhhhhhhccceehHhHHHHHhhcCCCchHHHHHHHHHHHHHHhhcc
Q 046796           47 TPIAVCGSYAFGSCAGYSSPTQSAIREDIALSLAEYSVFGSILTFGAMIGAI   98 (99)
Q Consensus        47 ~~vaalg~~~~Gy~~G~~s~~l~~l~~~~~is~~~~s~i~Si~~lGa~~Gal   98 (99)
                      .++..+..+..|++.+..++.+|.+.++++++..+.+++.++..++..++++
T Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~   79 (438)
T 3o7q_A           28 FALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPI   79 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHH
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH
Confidence            3444556778899988989999999999999999999999999999988764

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=93.79  E-value=0.094  Score=37.45  Aligned_cols=50  Identities=6%  Similarity=-0.043  Sum_probs=42.6

Q ss_pred             HHHHhhhhhhhccceehHhHHHHHhhcCCCchHHHHHHHHHHHHHHhhcc
Q 046796           49 IAVCGSYAFGSCAGYSSPTQSAIREDIALSLAEYSVFGSILTFGAMIGAI   98 (99)
Q Consensus        49 vaalg~~~~Gy~~G~~s~~l~~l~~~~~is~~~~s~i~Si~~lGa~~Gal   98 (99)
                      +.+++.+..+++.+..++.+|.+.++++.+..+.+++.++..++..++++
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~   53 (375)
T 2gfp_A            4 MLVLLVAVGQMAQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQL   53 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH
Confidence            34556677888888888999999999999999999999999999988865

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=93.43  E-value=0.061  Score=39.10  Aligned_cols=55  Identities=9%  Similarity=-0.110  Sum_probs=45.6

Q ss_pred             HHHHHHHHHHhhhhhhhccceehHhHHHHHhhcCCCchHHHHHHHHHHHHHHhhcc
Q 046796           43 VYFSTPIAVCGSYAFGSCAGYSSPTQSAIREDIALSLAEYSVFGSILTFGAMIGAI   98 (99)
Q Consensus        43 ~~~~~~vaalg~~~~Gy~~G~~s~~l~~l~~~~~is~~~~s~i~Si~~lGa~~Gal   98 (99)
                      .+.......++.+..+++.+..++.++.+.+++ ++..+.+|+.++..++.+++++
T Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~   80 (451)
T 1pw4_A           26 RWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKF   80 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHH
Confidence            344455566677888999999999999998889 9999999999999999888764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	99
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	95.94
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	91.49

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=95.94  E-value=0.0017  Score=45.25  Aligned_cols=56  Identities=7%  Similarity=-0.084  Sum_probs=42.1

Q ss_pred             HHHHHHHHHHHhhhhhhhccceehHhHHHHHhhcCCCchHHHHHHHHHHHHHHhhcc
Q 046796           42 MVYFSTPIAVCGSYAFGSCAGYSSPTQSAIREDIALSLAEYSVFGSILTFGAMIGAI   98 (99)
Q Consensus        42 ~~~~~~~vaalg~~~~Gy~~G~~s~~l~~l~~~~~is~~~~s~i~Si~~lGa~~Gal   98 (99)
                      +++...+...++.+...++....+.+.|.++ +++++..|.+|+.|++.++..+|++
T Consensus        22 ~~w~i~~~~~~~~~~~~~~~~~~~~~~p~~~-~~g~s~~~~g~~~s~~~~~~~~~~~   77 (447)
T d1pw4a_          22 LRWQIFLGIFFGYAAYYLVRKNFALAMPYLV-EQGFSRGDLGFALSGISIAYGFSKF   77 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTSHHHHHHHTT-SSTTCSSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCcCHHHHHHHHHHHHHHHHHHHH
Confidence            3444545555666667777666777778776 5799999999999999999988764

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=91.49  E-value=0.073  Score=35.31  Aligned_cols=44  Identities=7%  Similarity=0.026  Sum_probs=34.0

Q ss_pred             hhhhhccceehHhHHH-HHhhcCCCchHHHHHHHHHHHHHHhhcc
Q 046796           55 YAFGSCAGYSSPTQSA-IREDIALSLAEYSVFGSILTFGAMIGAI   98 (99)
Q Consensus        55 ~~~Gy~~G~~s~~l~~-l~~~~~is~~~~s~i~Si~~lGa~~Gal   98 (99)
                      +.+.+..+...+.++. +++.++++..+.+++.++..++.+++++
T Consensus        17 f~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~i~s~~~l~~~i~~~   61 (417)
T d1pv7a_          17 FFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQP   61 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHH
Confidence            4445555566677764 6778899999999999999999988764