Citrus Sinensis ID: 046819

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80
Protein Sequence
MEGEPTRIIVAVNESTIKGYPHASISSRGAFEWSVQKIIRSNTSGFKLLFLHVQVPDEDEIFASFDFGKENGILVLNEYA
Secondary Structure (PSIPRED)
cccccEEEEEEEEccccccccccccccccHHHHHHHHHHHHccccEEEEEEEEEEcccccccccccccccccEEEEEEcc
Secondary Structure Prediction (SSPRO)
ccccccEEEEEEEccccccccccccccHHHHHHHHHHHHcccccccEEEEEEEEccccccEEEccccccccEEEEEcccc
Coil and Loop (DISEMBL)
MEGEPTRIIVAVNestikgyphasissrgaFEWSVQKIIRSNTSGFKLLFLHvqvpdedeifasfdfgkenGILVLNEYA
Flexible Loop (DISEMBL)
MEGEPTRIIVAvnestikgyphasissrgaFEWSVQKIIRSNTSGFKLLFLHVQVPDEDEIFASFDFGKENGILVLNEYA
Low Complexity Region (SEG)
MEGEPTRIIVAVNESTIKGYPHASISSRGAFEWSVQKIIRSNTSGFKLLFLHVQVPDEDEIFASFDFGKENGILVLNEYA
Disordered region (IsUnstruct)
*******IIVAVNESTIKGYPHASISSRGAFEWSVQKIIRSNTSGFKLLFLHVQVPDEDEIFASFDFGKENGILVLN***
Disordered Region (DISOPRED)
****PTR**VAVNESTIKGYPHASISSRGAFEWSVQKIIRSNTSGFKLLFLHVQVPDEDEIFASFDFGKENGILVLNEY*
Disordered Region (DISEMBL)
MEGEPTRIIVAVNESTIKGYPHASISSRGAFEWSVQKIIRSNTSGFKLLFLHVQVPDEDEIFASFDFGKENGILVLNEYA
Disordered Region (DISPRO)
***EPTRIIVAVNESTIKGYPHASISSRGAFEWSVQKIIRSNTSGFKLLFLHVQVPDEDEIFASFDFGKENGILVLNEYA
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MEGEPTRIIVAVNESTIKGYPHASISSRGAFEWSVQKIIRSNTSGFKLLFLHVQVPDEDEIFASFDFGKENGILVLNEYA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	80	2.2.26 [Sep-21-2011]
Q8LGG8	175	Universal stress protein	no	no	0.737	0.337	0.661	3e-17

>sp|Q8LGG8|USPAL_ARATH Universal stress protein A-like protein OS=Arabidopsis thaliana GN=At3g01520 PE=1 SV=2

 Score = 87.4 bits (215), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 39/59 (66%), Positives = 49/59 (83%)

Query: 1  MEGEPTRIIVAVNESTIKGYPHASISSRGAFEWSVQKIIRSNTSGFKLLFLHVQVPDED 59
          M  EPT+++VAVN STIK YP+ SIS + AFEW+++KI+RSNTS FK+L LHVQV DED
Sbjct: 1  MGSEPTKVMVAVNASTIKDYPNPSISCKRAFEWTLEKIVRSNTSDFKILLLHVQVVDED 59

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	80
365222940	175	Hop-interacting protein THI141 [Solanum	0.825	0.377	0.763	3e-23
224141283	176	predicted protein [Populus trichocarpa]	0.737	0.335	0.85	4e-22
15241464	175	universal stress protein (USP) family pr	0.825	0.377	0.708	2e-21
68299221	175	putative ethylene response protein [Caps	0.8	0.365	0.742	3e-21
225452434	175	PREDICTED: universal stress protein A-li	0.737	0.337	0.796	3e-21
294653365	175	USP transcription factor [Vitis pseudore	0.737	0.337	0.796	3e-21
297811601	175	universal stress protein family protein	0.825	0.377	0.694	5e-21
255567347	152	hypothetical protein RCOM_1095450 [Ricin	0.787	0.414	0.710	1e-20
449450095	175	PREDICTED: universal stress protein A-li	0.875	0.4	0.684	2e-20
115448199	177	Os02g0707900 [Oryza sativa Japonica Grou	0.7	0.316	0.732	1e-18

>gi|365222940|gb|AEW69822.1| Hop-interacting protein THI141 [Solanum lycopersicum]

 Score =  112 bits (279), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 55/72 (76%), Positives = 61/72 (84%), Gaps = 6/72 (8%)

Query: 1  MEGEPTRIIVAVNESTIKGYPHASISSRGAFEWSVQKIIRSNTSGFKLLFLHVQVPDE-- 58
          M GE TR++VAVNESTIKGYPHASISS+GAFEW++ KI+RSNTSGFKLLFLHVQVPDE  
Sbjct: 1  MAGEATRVMVAVNESTIKGYPHASISSKGAFEWTLNKIVRSNTSGFKLLFLHVQVPDEDG 60

Query: 59 ----DEIFASFD 66
              D IFAS D
Sbjct: 61 FEDMDSIFASPD 72

Source: Solanum lycopersicum

Species: Solanum lycopersicum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224141283|ref|XP_002324004.1| predicted protein [Populus trichocarpa] gi|222867006|gb|EEF04137.1| predicted protein [Populus trichocarpa]

 Score =  108 bits (271), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 51/60 (85%), Positives = 57/60 (95%), Gaps = 1/60 (1%)

Query: 1  MEG-EPTRIIVAVNESTIKGYPHASISSRGAFEWSVQKIIRSNTSGFKLLFLHVQVPDED 59
          MEG E TRI++ VNESTIKGYPHASISSRGAF+W++QKI+RSNTSGFKLLFLHVQVPDED
Sbjct: 1  MEGAEATRIMMGVNESTIKGYPHASISSRGAFDWTLQKIVRSNTSGFKLLFLHVQVPDED 60

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15241464|ref|NP_196972.1| universal stress protein (USP) family protein [Arabidopsis thaliana] gi|7573317|emb|CAB87635.1| putative protein [Arabidopsis thaliana] gi|45476563|gb|AAS65947.1| At5g14680 [Arabidopsis thaliana] gi|52627107|gb|AAU84680.1| At5g14680 [Arabidopsis thaliana] gi|332004679|gb|AED92062.1| universal stress protein (USP) family protein [Arabidopsis thaliana]

 Score =  105 bits (263), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 51/72 (70%), Positives = 60/72 (83%), Gaps = 6/72 (8%)

Query: 1  MEGEPTRIIVAVNESTIKGYPHASISSRGAFEWSVQKIIRSNTSGFKLLFLHVQVPDE-- 58
          ME EPTR++VAVNEST+KGYPHASISS+ AFEW+++KI+RSNTSGFKLL LHVQV DE  
Sbjct: 1  MESEPTRVMVAVNESTLKGYPHASISSKKAFEWTLKKIVRSNTSGFKLLLLHVQVQDEDG 60

Query: 59 ----DEIFASFD 66
              D I+AS D
Sbjct: 61 FDDMDSIYASPD 72

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|68299221|emb|CAJ13711.1| putative ethylene response protein [Capsicum chinense]

 Score =  105 bits (263), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 52/70 (74%), Positives = 59/70 (84%), Gaps = 6/70 (8%)

Query: 1  MEGEPTRIIVAVNESTIKGYPHASISSRGAFEWSVQKIIRSNTSGFKLLFLHVQVPDE-- 58
          MEGE T ++VAV+ESTI GYPHASISS+GAFEW++ KI+RSNTSGFKLLFLHVQVPDE  
Sbjct: 1  MEGESTLVMVAVSESTINGYPHASISSKGAFEWTLNKIVRSNTSGFKLLFLHVQVPDEDG 60

Query: 59 ----DEIFAS 64
              D IFAS
Sbjct: 61 FEDMDSIFAS 70

Source: Capsicum chinense

Species: Capsicum chinense

Genus: Capsicum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225452434|ref|XP_002277349.1| PREDICTED: universal stress protein A-like protein [Vitis vinifera] gi|296087653|emb|CBI34909.3| unnamed protein product [Vitis vinifera]

 Score =  105 bits (263), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 47/59 (79%), Positives = 54/59 (91%)

Query: 1  MEGEPTRIIVAVNESTIKGYPHASISSRGAFEWSVQKIIRSNTSGFKLLFLHVQVPDED 59
          ME EPTRI++AVNES+IKGYPH SISS+ AFEW++QKI+RSNTS FKLLFLHV VPDED
Sbjct: 1  MESEPTRIMIAVNESSIKGYPHPSISSKRAFEWTLQKIVRSNTSAFKLLFLHVHVPDED 59

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|294653365|gb|ADF28553.1| USP transcription factor [Vitis pseudoreticulata]

 Score =  105 bits (263), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 47/59 (79%), Positives = 54/59 (91%)

Query: 1  MEGEPTRIIVAVNESTIKGYPHASISSRGAFEWSVQKIIRSNTSGFKLLFLHVQVPDED 59
          ME EPTRI++AVNES+IKGYPH SISS+ AFEW++QKI+RSNTS FKLLFLHV VPDED
Sbjct: 1  MESEPTRIMIAVNESSIKGYPHPSISSKRAFEWTLQKIVRSNTSAFKLLFLHVHVPDED 59

Source: Vitis pseudoreticulata

Species: Vitis pseudoreticulata

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297811601|ref|XP_002873684.1| universal stress protein family protein [Arabidopsis lyrata subsp. lyrata] gi|297319521|gb|EFH49943.1| universal stress protein family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  105 bits (261), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 50/72 (69%), Positives = 60/72 (83%), Gaps = 6/72 (8%)

Query: 1  MEGEPTRIIVAVNESTIKGYPHASISSRGAFEWSVQKIIRSNTSGFKLLFLHVQVPDE-- 58
          ME EPTR++VAVNEST++GYPHASISS+ AFEW+++KI+RSNTSGFKLL LHVQV DE  
Sbjct: 1  MESEPTRVMVAVNESTLRGYPHASISSKKAFEWTLKKIVRSNTSGFKLLLLHVQVQDEDG 60

Query: 59 ----DEIFASFD 66
              D I+AS D
Sbjct: 61 FDDMDSIYASPD 72

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255567347|ref|XP_002524653.1| hypothetical protein RCOM_1095450 [Ricinus communis] gi|223536014|gb|EEF37672.1| hypothetical protein RCOM_1095450 [Ricinus communis]

 Score =  103 bits (257), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 49/69 (71%), Positives = 57/69 (82%), Gaps = 6/69 (8%)

Query: 4  EPTRIIVAVNESTIKGYPHASISSRGAFEWSVQKIIRSNTSGFKLLFLHVQVPDE----- 58
          EPTRI++ VNESTIKGYPH SISS+GAF+W++ KI+RSNTS FKLLFLHVQVPDE     
Sbjct: 5  EPTRIMIGVNESTIKGYPHPSISSKGAFDWTLSKIVRSNTSAFKLLFLHVQVPDEDGFHD 64

Query: 59 -DEIFASFD 66
           D I+AS D
Sbjct: 65 MDSIYASPD 73

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449450095|ref|XP_004142799.1| PREDICTED: universal stress protein A-like protein-like [Cucumis sativus]

 Score =  102 bits (255), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 52/76 (68%), Positives = 60/76 (78%), Gaps = 6/76 (7%)

Query: 1  MEGEPTRIIVAVNESTIKGYPHASISSRGAFEWSVQKIIRSNTSGFKLLFLHVQVPDE-- 58
          ME  PTRI++AVN+STIKGYPH SISS+ AFEW++QKI+RSNTSGF+ LFLHV VPDE  
Sbjct: 1  MEEGPTRIMLAVNQSTIKGYPHPSISSKRAFEWTLQKIVRSNTSGFRFLFLHVLVPDEDG 60

Query: 59 ----DEIFASFDFGKE 70
              D IFAS D  KE
Sbjct: 61 FDEVDSIFASPDDFKE 76

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115448199|ref|NP_001047879.1| Os02g0707900 [Oryza sativa Japonica Group] gi|19387249|gb|AAL87161.1|AF480496_15 putative ethylene-responsive protein [Oryza sativa Japonica Group] gi|41053162|dbj|BAD08104.1| ethylene-responsive protein-like [Oryza sativa Japonica Group] gi|113537410|dbj|BAF09793.1| Os02g0707900 [Oryza sativa Japonica Group] gi|125540838|gb|EAY87233.1| hypothetical protein OsI_08635 [Oryza sativa Indica Group] gi|125583408|gb|EAZ24339.1| hypothetical protein OsJ_08092 [Oryza sativa Japonica Group] gi|215693884|dbj|BAG89083.1| unnamed protein product [Oryza sativa Japonica Group] gi|215717136|dbj|BAG95499.1| unnamed protein product [Oryza sativa Japonica Group]

 Score = 96.7 bits (239), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 41/56 (73%), Positives = 49/56 (87%)

Query: 4  EPTRIIVAVNESTIKGYPHASISSRGAFEWSVQKIIRSNTSGFKLLFLHVQVPDED 59
          EPTR++VAVNES+IKGYPH SIS R AF+W + K++RSN +GF LLFLHVQVPDED
Sbjct: 6  EPTRVMVAVNESSIKGYPHPSISCRAAFDWMLSKLVRSNAAGFHLLFLHVQVPDED 61

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	80
TAIR|locus:2222687	175	AT5G14680 "AT5G14680" [Arabido	0.737	0.337	0.796	9e-22
TAIR|locus:2084153	175	AT3G01520 "AT3G01520" [Arabido	0.737	0.337	0.661	8.6e-17

TAIR|locus:2222687 AT5G14680 "AT5G14680" [Arabidopsis thaliana (taxid:3702)]

 Score = 254 (94.5 bits), Expect = 9.0e-22, P = 9.0e-22
 Identities = 47/59 (79%), Positives = 55/59 (93%)

Query:     1 MEGEPTRIIVAVNESTIKGYPHASISSRGAFEWSVQKIIRSNTSGFKLLFLHVQVPDED 59
             ME EPTR++VAVNEST+KGYPHASISS+ AFEW+++KI+RSNTSGFKLL LHVQV DED
Sbjct:     1 MESEPTRVMVAVNESTLKGYPHASISSKKAFEWTLKKIVRSNTSGFKLLLLHVQVQDED 59

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0002238 "response to molecule of fungal origin" evidence=RCA

TAIR|locus:2084153 AT3G01520 "AT3G01520" [Arabidopsis thaliana (taxid:3702)]

 Score = 207 (77.9 bits), Expect = 8.6e-17, P = 8.6e-17
 Identities = 39/59 (66%), Positives = 49/59 (83%)

Query:     1 MEGEPTRIIVAVNESTIKGYPHASISSRGAFEWSVQKIIRSNTSGFKLLFLHVQVPDED 59
             M  EPT+++VAVN STIK YP+ SIS + AFEW+++KI+RSNTS FK+L LHVQV DED
Sbjct:     1 MGSEPTKVMVAVNASTIKDYPNPSISCKRAFEWTLEKIVRSNTSDFKILLLHVQVVDED 59


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.318   0.136   0.391    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       80        80   0.00091  102 3  11 22  0.42    29
                                                     29  0.41    30


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  516 (55 KB)
  Total size of DFA:  100 KB (2071 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  8.22u 0.23s 8.45t   Elapsed:  00:00:00
  Total cpu time:  8.22u 0.23s 8.45t   Elapsed:  00:00:00
  Start:  Fri May 10 01:10:25 2013   End:  Fri May 10 01:10:25 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0005886 "plasma membrane" evidence=IDA

GO:0002238 "response to molecule of fungal origin" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	80
cd01989	146	STK_N The N-terminal domain of Eukaryotic Serine T	98.2
PF00582	140	Usp: Universal stress protein family; InterPro: IP	98.07
PRK09982	142	universal stress protein UspD; Provisional	97.9
cd01987	124	USP_OKCHK USP domain is located between the N-term	97.83
PRK15118	144	universal stress global response regulator UspA; P	97.72
PRK15005	144	universal stress protein F; Provisional	97.65
PRK15456	142	universal stress protein UspG; Provisional	97.21
cd01988	132	Na_H_Antiporter_C The C-terminal domain of a subfa	97.12
PRK10116	142	universal stress protein UspC; Provisional	96.83
cd00293	130	USP_Like Usp: Universal stress protein family. The	96.77
PRK11175	305	universal stress protein UspE; Provisional	96.25
PRK12652	357	putative monovalent cation/H+ antiporter subunit E	96.18
PRK11175	305	universal stress protein UspE; Provisional	92.39
COG0589	154	UspA Universal stress protein UspA and related nuc	84.26

>cd01989 STK_N The N-terminal domain of Eukaryotic Serine Threonine kinases

Probab=98.20  E-value=2.4e-06  Score=54.84  Aligned_cols=39  Identities=23%  Similarity=0.564  Sum_probs=32.6

Q ss_pred             EEEEEEeCCccCCCCCCCcchHHHHHHHhhhhhccCCCcceEEEEEeeCCC
Q 046819            7 RIIVAVNESTIKGYPHASISSRGAFEWSVQKIIRSNTSGFKLLFLHVQVPD   57 (80)
Q Consensus         7 rvmVaVDeSe~kgyp~~si~S~~AleWtL~~l~~~~~~~fkLvlLHvqpp~   57 (80)
                      +||||||.|+         +|+.||+|+++...+.+   .+|.+|||.++.
T Consensus         1 ~ILVavD~S~---------~s~~al~~a~~~a~~~~---~~l~ll~v~~~~   39 (146)
T cd01989           1 SVAVAVDKDK---------KSKNALKWALDNLATKG---QTIVLVHVHPPI   39 (146)
T ss_pred             CEEEEecCcc---------ccHHHHHHHHHhccCCC---CcEEEEEeccCc
Confidence            4899999999         99999999998755433   379999998765

The Serine Threonine kinases are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. The N-terminal domain is homologous to the USP family which has a ATP binding fold. The N-terminal domain is predicted to be involved in ATP binding.

>PF00582 Usp: Universal stress protein family; InterPro: IPR006016 The universal stress protein UspA P28242 from SWISSPROT [] is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents

Probab=98.07  E-value=7.9e-06  Score=49.02  Aligned_cols=42  Identities=33%  Similarity=0.515  Sum_probs=35.3

Q ss_pred             eEEEEEEeCCccCCCCCCCcchHHHHHHHhhhhhccCCCcceEEEEEeeCCCCC
Q 046819            6 TRIIVAVNESTIKGYPHASISSRGAFEWSVQKIIRSNTSGFKLLFLHVQVPDED   59 (80)
Q Consensus         6 ~rvmVaVDeSe~kgyp~~si~S~~AleWtL~~l~~~~~~~fkLvlLHvqpp~~~   59 (80)
                      +||||++|+|+         .|..|++|++...-..+   .++.+|||.++...
T Consensus         3 ~~Ilv~~d~~~---------~~~~al~~a~~la~~~~---~~i~~l~v~~~~~~   44 (140)
T PF00582_consen    3 KRILVAIDGSE---------ESRRALRFALELAKRSG---AEITLLHVIPPPPQ   44 (140)
T ss_dssp             SEEEEEESSSH---------HHHHHHHHHHHHHHHHT---CEEEEEEEEESCHC
T ss_pred             CEEEEEECCCH---------HHHHHHHHHHHHHHhhC---CeEEEEEeeccccc
Confidence            68999999999         99999999999555433   38999999888744

UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA [] reveals an alpha/beta fold similar to that of the Methanocaldococcus jannaschii (Methanococcus jannaschii) MJ0577 protein, which binds ATP [], though UspA lacks ATP-binding activity.; GO: 0006950 response to stress; PDB: 3DLO_C 3QTB_A 2PFS_A 3TNJ_A 1JMV_D 3FH0_B 3FDX_B 3AB7_A 3AB8_A 2GM3_F ....

>PRK09982 universal stress protein UspD; Provisional

Probab=97.90  E-value=2.9e-05  Score=51.00  Aligned_cols=40  Identities=13%  Similarity=0.105  Sum_probs=33.5

Q ss_pred             eEEEEEEeCCccCCCCCCCcchHHHHHHHhhhhhccCCCcceEEEEEeeCCC
Q 046819            6 TRIIVAVNESTIKGYPHASISSRGAFEWSVQKIIRSNTSGFKLLFLHVQVPD   57 (80)
Q Consensus         6 ~rvmVaVDeSe~kgyp~~si~S~~AleWtL~~l~~~~~~~fkLvlLHvqpp~   57 (80)
                      ++|+||||.|+         .|..||+++++--...+   -+|.+|||.++.
T Consensus         4 k~ILvavD~S~---------~s~~al~~A~~lA~~~~---a~l~llhV~~~~   43 (142)
T PRK09982          4 KHIGVAISGNE---------EDALLVNKALELARHND---AHLTLIHIDDGL   43 (142)
T ss_pred             eEEEEEecCCc---------chHHHHHHHHHHHHHhC---CeEEEEEEccCc
Confidence            68999999999         99999999998654433   279999998765

>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family

Probab=97.83  E-value=3.5e-05  Score=48.21  Aligned_cols=40  Identities=15%  Similarity=0.204  Sum_probs=32.8

Q ss_pred             EEEEEEeCCccCCCCCCCcchHHHHHHHhhhhhccCCCcceEEEEEeeCCCC
Q 046819            7 RIIVAVNESTIKGYPHASISSRGAFEWSVQKIIRSNTSGFKLLFLHVQVPDE   58 (80)
Q Consensus         7 rvmVaVDeSe~kgyp~~si~S~~AleWtL~~l~~~~~~~fkLvlLHvqpp~~   58 (80)
                      +|||+||.|+         +|.+|++|+.+.....+   .+|.+|||.+++.
T Consensus         1 ~Ilv~vd~s~---------~s~~al~~a~~la~~~~---~~l~ll~v~~~~~   40 (124)
T cd01987           1 RILVCISGGP---------NAERLIRRAARLADRLK---APWYVVYVETPRL   40 (124)
T ss_pred             CEEEEECCCc---------chHHHHHHHHHHHHHhC---CCEEEEEEecCcc
Confidence            5999999999         99999999996544322   3799999998874

The family of KdpD sensor kinase proteins regulates the kdpFABC operon responsible for potassium transport. The USP domain is homologous to the universal stress protein Usp Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity.

>PRK15118 universal stress global response regulator UspA; Provisional

Probab=97.72  E-value=7.6e-05  Score=48.08  Aligned_cols=40  Identities=30%  Similarity=0.294  Sum_probs=32.4

Q ss_pred             CeEEEEEEeCCccCCCCCCCcchHHHHHHHhhhhhccCCCcceEEEEEeeCC
Q 046819            5 PTRIIVAVNESTIKGYPHASISSRGAFEWSVQKIIRSNTSGFKLLFLHVQVP   56 (80)
Q Consensus         5 ~~rvmVaVDeSe~kgyp~~si~S~~AleWtL~~l~~~~~~~fkLvlLHvqpp   56 (80)
                      -++|+|++|-|+         .|..||+|+++-.-..+   -+|.+|||.++
T Consensus         3 ~~~ILvavD~S~---------~s~~al~~a~~la~~~~---a~l~ll~v~~~   42 (144)
T PRK15118          3 YKHILIAVDLSP---------ESKVLVEKAVSMARPYN---AKVSLIHVDVN   42 (144)
T ss_pred             ceEEEEEccCCh---------hHHHHHHHHHHHHHhhC---CEEEEEEEccC
Confidence            378999999999         99999999998644333   27999999544

>PRK15005 universal stress protein F; Provisional

Probab=97.65  E-value=0.00011  Score=46.92  Aligned_cols=40  Identities=18%  Similarity=0.174  Sum_probs=32.3

Q ss_pred             eEEEEEEeCCccCCCCCCCcc--hHHHHHHHhhhhhccCCCcceEEEEEeeCCC
Q 046819            6 TRIIVAVNESTIKGYPHASIS--SRGAFEWSVQKIIRSNTSGFKLLFLHVQVPD   57 (80)
Q Consensus         6 ~rvmVaVDeSe~kgyp~~si~--S~~AleWtL~~l~~~~~~~fkLvlLHvqpp~   57 (80)
                      ++|+|+||.|+         +  +..|++|+++-..+.+   -+|.+|||.++.
T Consensus         3 ~~ILv~~D~s~---------~~~~~~a~~~a~~la~~~~---~~l~ll~v~~~~   44 (144)
T PRK15005          3 RTILVPIDISD---------SELTQRVISHVEAEAKIDD---AEVHFLTVIPSL   44 (144)
T ss_pred             ccEEEecCCCc---------hhHHHHHHHHHHHHHhccC---CeEEEEEEEccC
Confidence            57999999999         7  5799999998654433   279999998764

>PRK15456 universal stress protein UspG; Provisional

Probab=97.21  E-value=0.00072  Score=43.72  Aligned_cols=40  Identities=23%  Similarity=0.245  Sum_probs=32.1

Q ss_pred             eEEEEEEeCC--ccCCCCCCCcchHHHHHHHhhhhhccCCCcceEEEEEeeCCCC
Q 046819            6 TRIIVAVNES--TIKGYPHASISSRGAFEWSVQKIIRSNTSGFKLLFLHVQVPDE   58 (80)
Q Consensus         6 ~rvmVaVDeS--e~kgyp~~si~S~~AleWtL~~l~~~~~~~fkLvlLHvqpp~~   58 (80)
                      ++|||+||-|  +         .|..|++|+++ +...  .. +|.+|||.++..
T Consensus         3 ~~ILv~vD~S~~~---------~s~~al~~A~~-la~~--~~-~l~llhv~~~~~   44 (142)
T PRK15456          3 KTIIMPVDVFEME---------LSDKAVRHAEF-LAQD--DG-VIHLLHVLPGSA   44 (142)
T ss_pred             ccEEEeccCCchh---------HHHHHHHHHHH-HHhc--CC-eEEEEEEecCcc
Confidence            6799999998  5         79999999996 4432  23 799999988763

>cd01988 Na_H_Antiporter_C The C-terminal domain of a subfamily of Na+ /H+ antiporter existed in bacteria and archea

Probab=97.12  E-value=0.0012  Score=40.85  Aligned_cols=40  Identities=20%  Similarity=0.234  Sum_probs=32.2

Q ss_pred             EEEEEEeCCccCCCCCCCcchHHHHHHHhhhhhccCCCcceEEEEEeeCCCC
Q 046819            7 RIIVAVNESTIKGYPHASISSRGAFEWSVQKIIRSNTSGFKLLFLHVQVPDE   58 (80)
Q Consensus         7 rvmVaVDeSe~kgyp~~si~S~~AleWtL~~l~~~~~~~fkLvlLHvqpp~~   58 (80)
                      +|||+||.|+         .+..|++|+..-.-..   +-++.+||+.++.+
T Consensus         1 ~ILv~vd~s~---------~~~~~l~~a~~la~~~---~~~v~ll~v~~~~~   40 (132)
T cd01988           1 RILVPVANPN---------TARDLLELAAALARAQ---NGEIIPLNVIEVPN   40 (132)
T ss_pred             CEEEecCCch---------hHHHHHHHHHHHhhcC---CCeEEEEEEEecCC
Confidence            5999999999         9999999998764322   23799999987653

Na+/H+ exchange proteins eject protons from cells, effectively eliminating excess acid from actively metabolising cells. Na+ /H+ exchange activity is also crucial for the regulation of cell volume, and for the reabsorption of NaCl across renal, intestinal, and other epithelia. These antiports exchange Na+ for H+ in an electroneutral manner, and this activity is carried out by a family of Na+ /H+ exchangers, or NHEs, which are known to be present in both prokaryotic and eukaryotic cells. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N-terminus and a large cytoplasmic region at the C-terminus. The transmembrane regions M3-M12 share identity wit h other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the regio

>PRK10116 universal stress protein UspC; Provisional

Probab=96.83  E-value=0.003  Score=40.24  Aligned_cols=41  Identities=20%  Similarity=0.148  Sum_probs=32.8

Q ss_pred             CeEEEEEEeCCccCCCCCCCcchHHHHHHHhhhhhccCCCcceEEEEEeeCCC
Q 046819            5 PTRIIVAVNESTIKGYPHASISSRGAFEWSVQKIIRSNTSGFKLLFLHVQVPD   57 (80)
Q Consensus         5 ~~rvmVaVDeSe~kgyp~~si~S~~AleWtL~~l~~~~~~~fkLvlLHvqpp~   57 (80)
                      -++|+|++|.|+         .|..||+++++-....+   -+|.++|+-++.
T Consensus         3 ~~~ILv~~D~s~---------~s~~al~~A~~lA~~~~---a~l~ll~v~~~~   43 (142)
T PRK10116          3 YSNILVAVAVTP---------ESQQLLAKAVSIARPVN---GKISLITLASDP   43 (142)
T ss_pred             CceEEEEccCCc---------chHHHHHHHHHHHHHhC---CEEEEEEEccCc
Confidence            478999999999         99999999988654323   279999996554

>cd00293 USP_Like Usp: Universal stress protein family

Probab=96.77  E-value=0.004  Score=37.05  Aligned_cols=39  Identities=38%  Similarity=0.582  Sum_probs=33.1

Q ss_pred             EEEEEEeCCccCCCCCCCcchHHHHHHHhhhhhccCCCcceEEEEEeeCCC
Q 046819            7 RIIVAVNESTIKGYPHASISSRGAFEWSVQKIIRSNTSGFKLLFLHVQVPD   57 (80)
Q Consensus         7 rvmVaVDeSe~kgyp~~si~S~~AleWtL~~l~~~~~~~fkLvlLHvqpp~   57 (80)
                      +|+|++|.++         .+..+++|+++-....+   .++.++|+.++.
T Consensus         1 ~ilv~i~~~~---------~~~~~l~~a~~~a~~~~---~~i~~l~v~~~~   39 (130)
T cd00293           1 RILVAVDGSE---------ESERALRWAARLARRLG---AELVLLHVVDPP   39 (130)
T ss_pred             CEEEEeCCCH---------HHHHHHHHHHHHHHhcC---CEEEEEEEecCC
Confidence            5899999999         99999999999877533   479999998765

The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae Usp reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, athough Usp lacks ATP-binding activity.

>PRK11175 universal stress protein UspE; Provisional

Probab=96.25  E-value=0.0083  Score=42.89  Aligned_cols=39  Identities=15%  Similarity=0.140  Sum_probs=31.1

Q ss_pred             eEEEEEEeCCccCCCCCCCcchHHHHHHHhhhhhccCCCcceEEEEEeeCC
Q 046819            6 TRIIVAVNESTIKGYPHASISSRGAFEWSVQKIIRSNTSGFKLLFLHVQVP   56 (80)
Q Consensus         6 ~rvmVaVDeSe~kgyp~~si~S~~AleWtL~~l~~~~~~~fkLvlLHvqpp   56 (80)
                      ++|+|++|.|+         .|..||+|++.-....+   -+|.+||+.++
T Consensus         4 ~~ILv~~D~s~---------~~~~al~~a~~lA~~~~---a~l~ll~v~~~   42 (305)
T PRK11175          4 QNILVVIDPNQ---------DDQPALRRAVYLAQRNG---GKITAFLPIYD   42 (305)
T ss_pred             ceEEEEcCCCc---------cccHHHHHHHHHHHhcC---CCEEEEEeccC
Confidence            57999999999         99999999998543323   26888998654

>PRK12652 putative monovalent cation/H+ antiporter subunit E; Reviewed

Probab=96.18  E-value=0.01  Score=46.89  Aligned_cols=43  Identities=14%  Similarity=0.261  Sum_probs=34.4

Q ss_pred             CeEEEEEEeCCccCCCCCCCcchHHHHHHHhhhhhccCCCcceEEEEEeeCCC
Q 046819            5 PTRIIVAVNESTIKGYPHASISSRGAFEWSVQKIIRSNTSGFKLLFLHVQVPD   57 (80)
Q Consensus         5 ~~rvmVaVDeSe~kgyp~~si~S~~AleWtL~~l~~~~~~~fkLvlLHvqpp~   57 (80)
                      -+||+|+||.|+         .|..|++.+++--...+.+ -+|.+|||.++.
T Consensus         5 ykkILVavDGSe---------~S~~Al~~AielA~~~g~~-AeL~lL~Vv~~~   47 (357)
T PRK12652          5 ANRLLVPVADSV---------TVRQTVAYAVESAEEAAET-PTVHLVAAASGR   47 (357)
T ss_pred             cCeEEEEeCCCH---------HHHHHHHHHHHHHHhcCCC-CEEEEEEEecCc
Confidence            578999999999         9999999999965432112 389999998765

>PRK11175 universal stress protein UspE; Provisional

Probab=92.39  E-value=0.39  Score=34.36  Aligned_cols=42  Identities=14%  Similarity=0.146  Sum_probs=29.7

Q ss_pred             CeEEEEEEeCCccCCCCCCCcch-------HHHHHHHhhhhhccCCCcceEEEEEeeCCC
Q 046819            5 PTRIIVAVNESTIKGYPHASISS-------RGAFEWSVQKIIRSNTSGFKLLFLHVQVPD   57 (80)
Q Consensus         5 ~~rvmVaVDeSe~kgyp~~si~S-------~~AleWtL~~l~~~~~~~fkLvlLHvqpp~   57 (80)
                      .++||||+|-|+         ++       ..||+++++-.-. ..+. +|.+|||.++.
T Consensus       152 ~~~Ilva~D~s~---------~~~~~~~~~~~al~~a~~la~~-~~~a-~l~ll~v~~~~  200 (305)
T PRK11175        152 GGKILVAVNVAS---------EEPYHDALNEKLVEEAIDLAEQ-LNHA-EVHLVNAYPVT  200 (305)
T ss_pred             CCeEEEEeCCCC---------CccchhHHHHHHHHHHHHHHhh-CcCC-ceEEEEEecCc
Confidence            578999999887         53       6799998864322 2122 69999997654

>COG0589 UspA Universal stress protein UspA and related nucleotide-binding proteins [Signal transduction mechanisms]

Probab=84.26  E-value=4.5  Score=24.87  Aligned_cols=44  Identities=32%  Similarity=0.309  Sum_probs=33.7

Q ss_pred             CCeEEEEEEe-CCccCCCCCCCcchHHHHHHHhhhhhccCCCcceEEEEEeeCCCCC
Q 046819            4 EPTRIIVAVN-ESTIKGYPHASISSRGAFEWSVQKIIRSNTSGFKLLFLHVQVPDED   59 (80)
Q Consensus         4 e~~rvmVaVD-eSe~kgyp~~si~S~~AleWtL~~l~~~~~~~fkLvlLHvqpp~~~   59 (80)
                      .-++|++++| .|+         .+..|++++++-....+.   .+.++||-.+...
T Consensus         4 ~~~~il~~~d~~s~---------~~~~a~~~a~~~~~~~~~---~~~~~~v~~~~~~   48 (154)
T COG0589           4 MYKKILVAVDVGSE---------AAEKALEEAVALAKRLGA---PLILLVVIDPLEP   48 (154)
T ss_pred             ccceEEEEeCCCCH---------HHHHHHHHHHHHHHhcCC---eEEEEEEeccccc
Confidence            3578999999 999         999999999987664332   4557887666543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	80
2gm3_A	175	Crystal Structure Of An Universal Stress Protein Fa		1e-17

>pdb|2GM3|A Chain A, Crystal Structure Of An Universal Stress Protein Family Protein From Arabidopsis Thaliana At3g01520 With Amp Bound Length = 175

Iteration: 1
 Score = 84.7 bits (208), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 38/56 (67%), Positives = 47/56 (83%)
Query: 4  EPTRIIVAVNESTIKGYPHASISSRGAFEWSVQKIIRSNTSGFKLLFLHVQVPDED 59
          EPT++ VAVN STIK YP+ SIS + AFEW+++KI+RSNTS FK+L LHVQV DED
Sbjct: 4  EPTKVXVAVNASTIKDYPNPSISCKRAFEWTLEKIVRSNTSDFKILLLHVQVVDED 59

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	80
2gm3_A	175	Unknown protein; AT3G01520, putative ethylene-resp	1e-12

>2gm3_A Unknown protein; AT3G01520, putative ethylene-responsive protein, USP domain, nucleotide binding domain, AMP; HET: MSE AMP; 2.46A {Arabidopsis thaliana} SCOP: c.26.2.4 Length = 175

 Score = 58.7 bits (142), Expect = 1e-12
 Identities = 38/56 (67%), Positives = 48/56 (85%)

Query: 4  EPTRIIVAVNESTIKGYPHASISSRGAFEWSVQKIIRSNTSGFKLLFLHVQVPDED 59
          EPT+++VAVN STIK YP+ SIS + AFEW+++KI+RSNTS FK+L LHVQV DED
Sbjct: 4  EPTKVMVAVNASTIKDYPNPSISCKRAFEWTLEKIVRSNTSDFKILLLHVQVVDED 59

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	80
2gm3_A	175	Unknown protein; AT3G01520, putative ethylene-resp	98.13
3fdx_A	143	Putative filament protein / universal stress PROT;	97.89
3idf_A	138	USP-like protein; universal, stress, PSI, MCSG, st	97.87
3tnj_A	150	Universal stress protein (USP); structural genomic	97.84
3hgm_A	147	Universal stress protein TEAD; rossman fold, signa	97.83
3s3t_A	146	Nucleotide-binding protein, universal stress PROT	97.8
1mjh_A	162	Protein (ATP-binding domain of protein MJ0577); hy	97.76
2z08_A	137	Universal stress protein family; uncharacterized c	97.7
1jmv_A	141	USPA, universal stress protein A; chaperone; 1.85A	97.69
1q77_A	138	Hypothetical protein AQ_178; structural genomics,	97.68
2dum_A	170	Hypothetical protein PH0823; conserved hypothetica	97.66
3fg9_A	156	Protein of universal stress protein USPA family; A	97.54
1tq8_A	163	Hypothetical protein RV1636; MTCY01B2.28, structur	97.38
3dlo_A	155	Universal stress protein; unknown function, struct	97.37
3ab8_A	268	Putative uncharacterized protein TTHA0350; tandem-	97.11
3cis_A	309	Uncharacterized protein; alpha/beta hydrolase, ATP	97.03
3loq_A	294	Universal stress protein; structural genomics, PSI	96.95
3mt0_A	290	Uncharacterized protein PA1789; structural genomic	96.84
3olq_A	319	Universal stress protein E; structural genomics, P	96.66
3mt0_A	290	Uncharacterized protein PA1789; structural genomic	96.63
3cis_A	309	Uncharacterized protein; alpha/beta hydrolase, ATP	96.5
3loq_A	294	Universal stress protein; structural genomics, PSI	96.23
3ab8_A	268	Putative uncharacterized protein TTHA0350; tandem-	95.88
3olq_A	319	Universal stress protein E; structural genomics, P	95.38

>2gm3_A Unknown protein; AT3G01520, putative ethylene-responsive protein, USP domain, nucleotide binding domain, AMP; HET: MSE AMP; 2.46A {Arabidopsis thaliana} SCOP: c.26.2.4

Probab=98.13  E-value=5e-06  Score=53.33  Aligned_cols=54  Identities=67%  Similarity=1.070  Sum_probs=43.1

Q ss_pred             CCeEEEEEEeCCccCCCCCCCcchHHHHHHHhhhhhccCCCcceEEEEEeeCCC
Q 046819            4 EPTRIIVAVNESTIKGYPHASISSRGAFEWSVQKIIRSNTSGFKLLFLHVQVPD   57 (80)
Q Consensus         4 e~~rvmVaVDeSe~kgyp~~si~S~~AleWtL~~l~~~~~~~fkLvlLHvqpp~   57 (80)
                      ..++|||+||.|+....|+++..|..||+|+++.+.+......+|.+|||.++.
T Consensus         4 ~~~~ILv~vD~s~~~~~~~~~~~s~~al~~a~~la~~~~~~~a~l~ll~v~~~~   57 (175)
T 2gm3_A            4 EPTKVMVAVNASTIKDYPNPSISCKRAFEWTLEKIVRSNTSDFKILLLHVQVVD   57 (175)
T ss_dssp             -CEEEEEECCBCSSSCTTCBCHHHHHHHHHHHHHTTTTCTTSEEEEEEEEEC--
T ss_pred             CccEEEEEECCCcccccccccHHHHHHHHHHHHHhhcccCCCCEEEEEEEeecc
Confidence            468999999999989999999999999999999875432123479999997654

>3fdx_A Putative filament protein / universal stress PROT; structural genomics, APC60640.1, universal protein F, PSI-2; HET: MSE ATP; 1.58A {Klebsiella pneumoniae subsp} PDB: 3fh0_A*

Probab=97.89  E-value=1.6e-05  Score=48.71  Aligned_cols=42  Identities=14%  Similarity=0.136  Sum_probs=33.7

Q ss_pred             CeEEEEEEeCCccCCCCCCCcc--hHHHHHHHhhhhhccCCCcceEEEEEeeCCCC
Q 046819            5 PTRIIVAVNESTIKGYPHASIS--SRGAFEWSVQKIIRSNTSGFKLLFLHVQVPDE   58 (80)
Q Consensus         5 ~~rvmVaVDeSe~kgyp~~si~--S~~AleWtL~~l~~~~~~~fkLvlLHvqpp~~   58 (80)
                      +++|+|+||.|+         .  |..|++|+++-.-..+   -+|.+|||.++..
T Consensus         1 ~k~ILv~vD~s~---------~~~s~~al~~a~~la~~~~---a~l~ll~v~~~~~   44 (143)
T 3fdx_A            1 SNAILVPIDISD---------KEFTERIISHVESEARIDD---AEVHFLTVIPSLP   44 (143)
T ss_dssp             CCEEEEECCTTC---------SSCCTTHHHHHHHHHHHHT---CEEEEEEEECC--
T ss_pred             CCEEEEEecCCh---------HhhHHHHHHHHHHHHHhcC---CeEEEEEEecCCc
Confidence            478999999999         9  9999999987654434   2799999988763

>3idf_A USP-like protein; universal, stress, PSI, MCSG, structural genomics, midwest center for structural genomics structure initiative; 2.00A {Wolinella succinogenes}

Probab=97.87  E-value=2.1e-05  Score=48.12  Aligned_cols=42  Identities=12%  Similarity=0.264  Sum_probs=35.0

Q ss_pred             eEEEEEEeCCccCCCCCCCcchHHHHHHHhhhh-hccCCCcceEEEEEeeCCCCC
Q 046819            6 TRIIVAVNESTIKGYPHASISSRGAFEWSVQKI-IRSNTSGFKLLFLHVQVPDED   59 (80)
Q Consensus         6 ~rvmVaVDeSe~kgyp~~si~S~~AleWtL~~l-~~~~~~~fkLvlLHvqpp~~~   59 (80)
                      ++|+|++|.|+         .|..|++|+++-. .+.+   -+|.+|||.++...
T Consensus         2 ~~ILv~~D~s~---------~s~~al~~a~~la~~~~~---a~l~ll~v~~~~~~   44 (138)
T 3idf_A            2 KKLLFAIDDTE---------ACERAAQYILDMFGKDAD---CTLTLIHVKPEFML   44 (138)
T ss_dssp             EEEEEECCSSH---------HHHHHHHHHHHHHTTCTT---EEEEEEEEECCCCC
T ss_pred             ceEEEEeCCCH---------HHHHHHHHHHHHhccCCC---CEEEEEEEecCCCc
Confidence            68999999999         9999999999976 4333   37999999887743

>3tnj_A Universal stress protein (USP); structural genomics, PSI-biology, midwest center for structu genomics, MCSG, chaperone; HET: AMP; 2.00A {Nitrosomonas europaea} PDB: 2pfs_A*

Probab=97.84  E-value=2.5e-05  Score=48.39  Aligned_cols=41  Identities=17%  Similarity=0.099  Sum_probs=33.2

Q ss_pred             CeEEEEEEeCCccCCCCCCCcchHHHHHHHhhhhhccCCCcceEEEEEeeCCC
Q 046819            5 PTRIIVAVNESTIKGYPHASISSRGAFEWSVQKIIRSNTSGFKLLFLHVQVPD   57 (80)
Q Consensus         5 ~~rvmVaVDeSe~kgyp~~si~S~~AleWtL~~l~~~~~~~fkLvlLHvqpp~   57 (80)
                      -++|+|++|.|+         .|..|++|+++-.-+.+   -+|.+|||.++.
T Consensus         6 ~~~ILv~vD~s~---------~s~~al~~a~~la~~~~---a~l~ll~v~~~~   46 (150)
T 3tnj_A            6 YHHILLAVDFSS---------EDSQVVQKVRNLASQIG---ARLSLIHVLDNI   46 (150)
T ss_dssp             CSEEEEECCCST---------THHHHHHHHHHHHHHHT---CEEEEEEEEC--
T ss_pred             cceEEEEeCCCH---------HHHHHHHHHHHHHhhcC---CEEEEEEEEcCc
Confidence            578999999999         99999999998655433   279999998765

>3hgm_A Universal stress protein TEAD; rossman fold, signaling protein; HET: ATP; 1.90A {Halomonas elongata} SCOP: c.26.2.0

Probab=97.83  E-value=2e-05  Score=48.31  Aligned_cols=41  Identities=27%  Similarity=0.223  Sum_probs=34.6

Q ss_pred             eEEEEEEeCCccCCCCCCCcchHHHHHHHhhhhhccCCCcceEEEEEeeCCCC
Q 046819            6 TRIIVAVNESTIKGYPHASISSRGAFEWSVQKIIRSNTSGFKLLFLHVQVPDE   58 (80)
Q Consensus         6 ~rvmVaVDeSe~kgyp~~si~S~~AleWtL~~l~~~~~~~fkLvlLHvqpp~~   58 (80)
                      ++|+|++|.|+         .|..|++|+++-.-+.+   -+|.+|||.++..
T Consensus         3 ~~ILv~vD~s~---------~s~~al~~A~~la~~~~---a~l~ll~v~~~~~   43 (147)
T 3hgm_A            3 NRIMVPVDGSK---------GAVKALEKGVGLQQLTG---AELYILCVFKHHS   43 (147)
T ss_dssp             SEEEEECCSBH---------HHHHHHHHHHHHHHHHC---CEEEEEEEECCHH
T ss_pred             ceEEEEeCCCH---------HHHHHHHHHHHHHHhcC---CEEEEEEEecCcc
Confidence            58999999999         99999999998655443   2799999988764

>3s3t_A Nucleotide-binding protein, universal stress PROT family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ATP; 1.90A {Lactobacillus plantarum} SCOP: c.26.2.0

Probab=97.80  E-value=2.6e-05  Score=47.94  Aligned_cols=42  Identities=29%  Similarity=0.260  Sum_probs=35.0

Q ss_pred             CeEEEEEEeCCccCCCCCCCcchHHHHHHHhhhhhccCCCcceEEEEEeeCCCC
Q 046819            5 PTRIIVAVNESTIKGYPHASISSRGAFEWSVQKIIRSNTSGFKLLFLHVQVPDE   58 (80)
Q Consensus         5 ~~rvmVaVDeSe~kgyp~~si~S~~AleWtL~~l~~~~~~~fkLvlLHvqpp~~   58 (80)
                      -++|+|++|.|+         .|..|++|+++-.-+.+   -+|.+|||.++..
T Consensus         5 ~~~ILv~~D~s~---------~s~~al~~A~~la~~~~---a~l~ll~v~~~~~   46 (146)
T 3s3t_A            5 YTNILVPVDSSD---------AAQAAFTEAVNIAQRHQ---ANLTALYVVDDSA   46 (146)
T ss_dssp             CCEEEEECCSSH---------HHHHHHHHHHHHHHHHT---CEEEEEEEEECCC
T ss_pred             cceEEEEcCCCH---------HHHHHHHHHHHHHHhcC---CEEEEEEEecCcc
Confidence            478999999999         99999999998665433   2799999987764

>1mjh_A Protein (ATP-binding domain of protein MJ0577); hypothetical protein, structural genomics, functional assignment; HET: ATP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.26.2.4

Probab=97.76  E-value=3.3e-05  Score=48.58  Aligned_cols=42  Identities=14%  Similarity=0.064  Sum_probs=34.0

Q ss_pred             CCeEEEEEEeCCccCCCCCCCcchHHHHHHHhhhhhccCCCcceEEEEEeeCCC
Q 046819            4 EPTRIIVAVNESTIKGYPHASISSRGAFEWSVQKIIRSNTSGFKLLFLHVQVPD   57 (80)
Q Consensus         4 e~~rvmVaVDeSe~kgyp~~si~S~~AleWtL~~l~~~~~~~fkLvlLHvqpp~   57 (80)
                      ..++|+|+||.|+         .|..|++|+++-.-+.+   -+|.+|||.++.
T Consensus         4 ~~~~ILv~vD~s~---------~s~~al~~a~~la~~~~---a~l~ll~v~~~~   45 (162)
T 1mjh_A            4 MYKKILYPTDFSE---------TAEIALKHVKAFKTLKA---EEVILLHVIDER   45 (162)
T ss_dssp             CCCEEEEECCSCH---------HHHHHHHHHHHTCCSSC---CEEEEEEEEEGG
T ss_pred             ccceEEEEeCCCH---------HHHHHHHHHHHHHhhcC---CeEEEEEEecCc
Confidence            3578999999999         99999999998644322   379999997654

>2z08_A Universal stress protein family; uncharacterized conserved protein, structural genomics, unknown function, NPPSFA; HET: ATP; 1.55A {Thermus thermophilus} SCOP: c.26.2.4 PDB: 1wjg_A* 2z09_A* 2z3v_A

Probab=97.70  E-value=4.5e-05  Score=46.89  Aligned_cols=40  Identities=23%  Similarity=0.267  Sum_probs=33.0

Q ss_pred             eEEEEEEeCCccCCCCCCCcchHHHHHHHhhhhhccCCCcceEEEEEeeCCC
Q 046819            6 TRIIVAVNESTIKGYPHASISSRGAFEWSVQKIIRSNTSGFKLLFLHVQVPD   57 (80)
Q Consensus         6 ~rvmVaVDeSe~kgyp~~si~S~~AleWtL~~l~~~~~~~fkLvlLHvqpp~   57 (80)
                      ++|+|++|.|+         .|..|++|+++-.-+.+   -+|.+|||.++.
T Consensus         3 ~~ILv~~D~s~---------~s~~al~~a~~la~~~~---a~l~ll~v~~~~   42 (137)
T 2z08_A            3 KTILLAYDGSE---------HARRAAEVAKAEAEAHG---ARLIVVHAYEPV   42 (137)
T ss_dssp             SEEEEECCSSH---------HHHHHHHHHHHHHHHHT---CEEEEEEEECC-
T ss_pred             ceEEEEeCCCH---------HHHHHHHHHHHHHhhcC---CEEEEEEEecCC
Confidence            68999999999         99999999998655433   279999998754

>1jmv_A USPA, universal stress protein A; chaperone; 1.85A {Haemophilus influenzae} SCOP: c.26.2.4

Probab=97.69  E-value=6.7e-05  Score=45.99  Aligned_cols=39  Identities=33%  Similarity=0.329  Sum_probs=32.4

Q ss_pred             eEEEEEEeCCccCCCCCCCcchHHHHHHHhhhhhccCCCcceEEEEEeeCC
Q 046819            6 TRIIVAVNESTIKGYPHASISSRGAFEWSVQKIIRSNTSGFKLLFLHVQVP   56 (80)
Q Consensus         6 ~rvmVaVDeSe~kgyp~~si~S~~AleWtL~~l~~~~~~~fkLvlLHvqpp   56 (80)
                      ++|+|++|.|+         .|..|++|++.-.-+.+   -+|.+|||.++
T Consensus         3 ~~ILv~~D~s~---------~s~~al~~a~~la~~~~---a~l~ll~v~~~   41 (141)
T 1jmv_A            3 KHILVAVDLSE---------ESPILLKKAVGIAKRHD---AKLSIIHVDVN   41 (141)
T ss_dssp             SEEEEEECCST---------THHHHHHHHHHHHHHHT---CEEEEEEEEEC
T ss_pred             ceEEEEecCch---------hhHHHHHHHHHHHHhcC---CEEEEEEEecC
Confidence            58999999999         99999999998655433   27999999854

>1q77_A Hypothetical protein AQ_178; structural genomics, universal stress protein, PSI, protein structure initiative; 2.70A {Aquifex aeolicus} SCOP: c.26.2.4

Probab=97.68  E-value=8.3e-05  Score=45.58  Aligned_cols=39  Identities=15%  Similarity=0.113  Sum_probs=32.5

Q ss_pred             CeEEEEEEeCCccCCCCCCCcchHHHHHHHhhhhhccCCCcceEEEEEee-C
Q 046819            5 PTRIIVAVNESTIKGYPHASISSRGAFEWSVQKIIRSNTSGFKLLFLHVQ-V   55 (80)
Q Consensus         5 ~~rvmVaVDeSe~kgyp~~si~S~~AleWtL~~l~~~~~~~fkLvlLHvq-p   55 (80)
                      -++|+|++|.|+         .|..|++|+++-.-+.+   -+|.+|||. +
T Consensus         4 ~~~ILv~~D~s~---------~s~~al~~a~~la~~~~---a~l~ll~v~~~   43 (138)
T 1q77_A            4 MKVLLVLTDAYS---------DCEKAITYAVNFSEKLG---AELDILAVLED   43 (138)
T ss_dssp             CEEEEEEESTTC---------CCHHHHHHHHHHHTTTC---CEEEEEEECHH
T ss_pred             ccEEEEEccCCH---------hHHHHHHHHHHHHHHcC---CeEEEEEEecc
Confidence            478999999999         99999999997654323   379999998 5

>2dum_A Hypothetical protein PH0823; conserved hypothetical protein, putative universal protein A structural genomics, NPPSFA; 2.75A {Pyrococcus horikoshii}

Probab=97.66  E-value=6.2e-05  Score=47.82  Aligned_cols=42  Identities=14%  Similarity=0.060  Sum_probs=34.2

Q ss_pred             CCeEEEEEEeCCccCCCCCCCcchHHHHHHHhhhhhccCCCcceEEEEEeeCCC
Q 046819            4 EPTRIIVAVNESTIKGYPHASISSRGAFEWSVQKIIRSNTSGFKLLFLHVQVPD   57 (80)
Q Consensus         4 e~~rvmVaVDeSe~kgyp~~si~S~~AleWtL~~l~~~~~~~fkLvlLHvqpp~   57 (80)
                      .-++|+|++|.|+         .|..|++|+++-.-+.+   -+|.+|||.++.
T Consensus         4 m~~~ILv~vD~s~---------~s~~al~~A~~la~~~~---a~l~ll~v~~~~   45 (170)
T 2dum_A            4 MFRKVLFPTDFSE---------GAYRAVEVFEKRNKMEV---GEVILLHVIDEG   45 (170)
T ss_dssp             CCSEEEEECCSSH---------HHHHHHHHHHHHCCSCC---SEEEEEEEEETT
T ss_pred             ccceEEEEecCCH---------HHHHHHHHHHHHHHhcC---CEEEEEEEecCc
Confidence            3578999999999         99999999998654322   379999997665

>3fg9_A Protein of universal stress protein USPA family; APC60691, nucleotide- binding, lactobacillus plantarum WCFS1, structural genomics PSI-2; 1.47A {Lactobacillus plantarum}

Probab=97.54  E-value=9.5e-05  Score=46.34  Aligned_cols=42  Identities=24%  Similarity=0.320  Sum_probs=33.8

Q ss_pred             CeEEEEEEe--CCccCCCCCCCcchHHHHHHHhhhhhccCCCcceEEEEEeeCCCC
Q 046819            5 PTRIIVAVN--ESTIKGYPHASISSRGAFEWSVQKIIRSNTSGFKLLFLHVQVPDE   58 (80)
Q Consensus         5 ~~rvmVaVD--eSe~kgyp~~si~S~~AleWtL~~l~~~~~~~fkLvlLHvqpp~~   58 (80)
                      -++|+|++|  .|+         .|..|++|+++-.-..+   -+|.+|||.++..
T Consensus        15 ~~~ILv~vD~~~s~---------~s~~al~~a~~la~~~~---a~l~ll~v~~~~~   58 (156)
T 3fg9_A           15 YRRILLTVDEDDNT---------SSERAFRYATTLAHDYD---VPLGICSVLESED   58 (156)
T ss_dssp             CC-EEEECCSCCCH---------HHHHHHHHHHHHHHHHT---CCEEEEEEECCCC
T ss_pred             CceEEEEECCCCCH---------HHHHHHHHHHHHHHhcC---CEEEEEEEEeCCC
Confidence            478999999  999         99999999998554433   2799999988764

>1tq8_A Hypothetical protein RV1636; MTCY01B2.28, structural target, NYSGXRC, PSI, protein structure initiative; 2.40A {Mycobacterium tuberculosis} SCOP: c.26.2.4

Probab=97.38  E-value=0.00014  Score=47.10  Aligned_cols=40  Identities=20%  Similarity=0.190  Sum_probs=31.0

Q ss_pred             CeEEEEEEeCCccCCCCCCCcchHHHHHHHhhhhhccCCCcceEEEE--EeeCCC
Q 046819            5 PTRIIVAVNESTIKGYPHASISSRGAFEWSVQKIIRSNTSGFKLLFL--HVQVPD   57 (80)
Q Consensus         5 ~~rvmVaVDeSe~kgyp~~si~S~~AleWtL~~l~~~~~~~fkLvlL--Hvqpp~   57 (80)
                      .++|+|+||.|+         .|..|++|+++-.- .+   -+|.+|  ||.++.
T Consensus        17 ~~~ILv~vD~s~---------~s~~al~~A~~lA~-~~---a~l~ll~a~v~~~~   58 (163)
T 1tq8_A           17 YKTVVVGTDGSD---------SSMRAVDRAAQIAG-AD---AKLIIASAYLPQHE   58 (163)
T ss_dssp             CCEEEEECCSSH---------HHHHHHHHHHHHHT-TT---SEEEEEEECCC---
T ss_pred             CCEEEEEcCCCH---------HHHHHHHHHHHHhC-CC---CEEEEEEeeeccCc
Confidence            678999999999         99999999998654 32   379999  775543

>3dlo_A Universal stress protein; unknown function, structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics; HET: MSE; 1.97A {Archaeoglobus fulgidus} PDB: 3qtb_A*

Probab=97.37  E-value=0.00016  Score=46.41  Aligned_cols=41  Identities=15%  Similarity=0.212  Sum_probs=34.0

Q ss_pred             CeEEEEEEeC-CccCCCCCCCcchHHHHHHHhhhhhccCCCcceEEEEEeeCCC
Q 046819            5 PTRIIVAVNE-STIKGYPHASISSRGAFEWSVQKIIRSNTSGFKLLFLHVQVPD   57 (80)
Q Consensus         5 ~~rvmVaVDe-Se~kgyp~~si~S~~AleWtL~~l~~~~~~~fkLvlLHvqpp~   57 (80)
                      -++|+|++|. |+         .|..|++|+++-.-..+.   +|.+|||.+++
T Consensus        24 ~~~ILv~vD~~s~---------~s~~al~~A~~la~~~~a---~l~llhV~~~~   65 (155)
T 3dlo_A           24 YMPIVVAVDKKSD---------RAERVLRFAAEEARLRGV---PVYVVHSLPGG   65 (155)
T ss_dssp             CCCEEEECCSSSH---------HHHHHHHHHHHHHHHHTC---CEEEEEEECCS
T ss_pred             cCeEEEEECCCCH---------HHHHHHHHHHHHHHhcCC---EEEEEEEEcCC
Confidence            4689999999 99         999999999986554332   79999998765

>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A*

Probab=97.11  E-value=0.00034  Score=47.20  Aligned_cols=40  Identities=25%  Similarity=0.220  Sum_probs=32.6

Q ss_pred             eEEEEEEeCCccCCCCCCCcchHHHHHHHhhhhhccCCCcceEEEEEeeCCC
Q 046819            6 TRIIVAVNESTIKGYPHASISSRGAFEWSVQKIIRSNTSGFKLLFLHVQVPD   57 (80)
Q Consensus         6 ~rvmVaVDeSe~kgyp~~si~S~~AleWtL~~l~~~~~~~fkLvlLHvqpp~   57 (80)
                      ++|+|++|.|+         .|..|++|+++-.-+.+   -+|.+|||.++.
T Consensus         1 k~ILv~vD~s~---------~s~~al~~A~~lA~~~~---a~l~ll~v~~~~   40 (268)
T 3ab8_A            1 MRILLATDGSP---------QARGAEALAEWLAYKLS---APLTVLFVVDTR   40 (268)
T ss_dssp             CCEEEECCSCG---------GGHHHHHHHHHHHHHHT---CCEEEEEEEEHH
T ss_pred             CcEEEEcCCCH---------HHHHHHHHHHHHHHHhC---CcEEEEEEeccC
Confidence            47999999999         99999999998655433   279999997654

>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A*

Probab=97.03  E-value=0.00055  Score=47.55  Aligned_cols=41  Identities=22%  Similarity=0.449  Sum_probs=34.2

Q ss_pred             CeEEEEEEeCCccCCCCCCCcchHHHHHHHhhhhhccCCCcceEEEEEeeCCC
Q 046819            5 PTRIIVAVNESTIKGYPHASISSRGAFEWSVQKIIRSNTSGFKLLFLHVQVPD   57 (80)
Q Consensus         5 ~~rvmVaVDeSe~kgyp~~si~S~~AleWtL~~l~~~~~~~fkLvlLHvqpp~   57 (80)
                      .++|+|++|.|+         .|..|++|++.-..+.+.   +|.+|||.++.
T Consensus        19 ~~~ILv~~D~s~---------~s~~al~~A~~lA~~~~a---~l~ll~v~~~~   59 (309)
T 3cis_A           19 SLGIIVGIDDSP---------AAQVAVRWAARDAELRKI---PLTLVHAVSPE   59 (309)
T ss_dssp             TTEEEEECCSSH---------HHHHHHHHHHHHHHHHTC---CEEEEEECCCC
T ss_pred             CCeEEEEECCCH---------HHHHHHHHHHHHHHhcCC---cEEEEEEecCc
Confidence            578999999999         999999999987654442   79999998744

>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus}

Probab=96.95  E-value=0.0006  Score=46.87  Aligned_cols=42  Identities=12%  Similarity=0.002  Sum_probs=34.2

Q ss_pred             CeEEEEEEeCCccCCCCCCCcchHHHHHHHhhhhhccCCCcceEEEEEeeCCCC
Q 046819            5 PTRIIVAVNESTIKGYPHASISSRGAFEWSVQKIIRSNTSGFKLLFLHVQVPDE   58 (80)
Q Consensus         5 ~~rvmVaVDeSe~kgyp~~si~S~~AleWtL~~l~~~~~~~fkLvlLHvqpp~~   58 (80)
                      -++|+|++|.|+         .|..|++|++.-.-+.+   -+|.+|||.++..
T Consensus        22 ~~~ILv~vD~s~---------~s~~al~~A~~lA~~~~---a~l~ll~v~~~~~   63 (294)
T 3loq_A           22 SNAMLLPTDLSE---------NSFKVLEYLGDFKKVGV---EEIGVLFVINLTK   63 (294)
T ss_dssp             TCEEEEECCSCT---------GGGGGGGGHHHHHHTTC---CEEEEECCEECTT
T ss_pred             hccEEEecCCCH---------HHHHHHHHHHHHHhhcC---CEEEEEEEecCcc
Confidence            468999999999         99999999998543322   3799999987764

>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa}

Probab=96.84  E-value=0.0021  Score=44.22  Aligned_cols=42  Identities=12%  Similarity=0.107  Sum_probs=33.1

Q ss_pred             CeEEEEEEeCCccCCCCCCCcc-------hHHHHHHHhhhhhccCCCcceEEEEEeeCCCC
Q 046819            5 PTRIIVAVNESTIKGYPHASIS-------SRGAFEWSVQKIIRSNTSGFKLLFLHVQVPDE   58 (80)
Q Consensus         5 ~~rvmVaVDeSe~kgyp~~si~-------S~~AleWtL~~l~~~~~~~fkLvlLHvqpp~~   58 (80)
                      .++|+|++|.|+         +       |..|++|+++-.-..+   -+|.+|||.++..
T Consensus       134 ~~~Ilva~D~s~---------~~~~~~~~s~~al~~a~~la~~~~---a~l~ll~v~~~~~  182 (290)
T 3mt0_A          134 GGKILAAVDVGN---------NDGEHRSLHAGIISHAYDIAGLAK---ATLHVISAHPSPM  182 (290)
T ss_dssp             TCEEEEEECTTC---------CSHHHHHHHHHHHHHHHHHHHHTT---CEEEEEEEEC---
T ss_pred             CCeEEEEECCCC---------cchhhhHHHHHHHHHHHHHHHHcC---CeEEEEEEecCcc
Confidence            579999999999         8       9999999988755433   2799999987653

>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis}

Probab=96.66  E-value=0.0026  Score=43.72  Aligned_cols=41  Identities=10%  Similarity=0.091  Sum_probs=33.7

Q ss_pred             CeEEEEEEeCCccCCCCCCCcchHHHHHHHhhhhhccCCCcceEEEEEeeCCC
Q 046819            5 PTRIIVAVNESTIKGYPHASISSRGAFEWSVQKIIRSNTSGFKLLFLHVQVPD   57 (80)
Q Consensus         5 ~~rvmVaVDeSe~kgyp~~si~S~~AleWtL~~l~~~~~~~fkLvlLHvqpp~   57 (80)
                      .++|+|++|.|+         .|..|++|++.-.-+.+   -+|.+|||.++.
T Consensus         7 ~k~ILv~~D~s~---------~s~~al~~A~~lA~~~~---a~l~ll~v~~~~   47 (319)
T 3olq_A            7 YQNLLVVIDPNQ---------DDQPALRRAVYIVQRNG---GRIKAFLPVYDL   47 (319)
T ss_dssp             SCEEEEECCTTC---------SCCHHHHHHHHHHHHHC---CEEEEEEEECCG
T ss_pred             cceEEEEECCCc---------ccHHHHHHHHHHHHHcC---CeEEEEEEeccc
Confidence            578999999999         99999999998654434   279999997653

>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa}

Probab=96.63  E-value=0.0021  Score=44.23  Aligned_cols=40  Identities=13%  Similarity=0.018  Sum_probs=33.8

Q ss_pred             CeEEEEEEeCCccCCCCCCCcchHHHHHHHhhhhhccCCCcceEEEEEeeCC
Q 046819            5 PTRIIVAVNESTIKGYPHASISSRGAFEWSVQKIIRSNTSGFKLLFLHVQVP   56 (80)
Q Consensus         5 ~~rvmVaVDeSe~kgyp~~si~S~~AleWtL~~l~~~~~~~fkLvlLHvqpp   56 (80)
                      .++|+|++|.|+         .|..|++|++.-.-+.+   .+|.+||+.+|
T Consensus         7 ~~~ILv~~D~s~---------~s~~al~~A~~la~~~~---a~l~ll~v~~~   46 (290)
T 3mt0_A            7 IRSILVVIEPDQ---------LEGLALKRAQLIAGVTQ---SHLHLLVCEKR   46 (290)
T ss_dssp             CCEEEEECCSSC---------SCCHHHHHHHHHHHHHC---CEEEEEEECSS
T ss_pred             hceEEEEeCCCc---------cchHHHHHHHHHHHhcC---CeEEEEEeeCc
Confidence            578999999999         99999999998655434   27999999875

>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A*

Probab=96.50  E-value=0.0024  Score=44.29  Aligned_cols=41  Identities=24%  Similarity=0.257  Sum_probs=33.3

Q ss_pred             CeEEEEEEeCCccCCCCCCCcchHHHHHHHhhhhhccCCCcceEEEEEeeCCC
Q 046819            5 PTRIIVAVNESTIKGYPHASISSRGAFEWSVQKIIRSNTSGFKLLFLHVQVPD   57 (80)
Q Consensus         5 ~~rvmVaVDeSe~kgyp~~si~S~~AleWtL~~l~~~~~~~fkLvlLHvqpp~   57 (80)
                      .++||||+|.|+         .|..|++|+++-.-+.+   -+|.+|||.++.
T Consensus       171 ~~~Ilv~~D~s~---------~s~~al~~a~~la~~~~---a~l~ll~v~~~~  211 (309)
T 3cis_A          171 QAPVLVGVDGSS---------ASELATAIAFDEASRRN---VDLVALHAWSDV  211 (309)
T ss_dssp             CCCEEEECCSSH---------HHHHHHHHHHHHHHHTT---CCEEEEEESCSS
T ss_pred             CCeEEEEeCCCh---------HHHHHHHHHHHHHHhcC---CEEEEEEEeecc
Confidence            468999999999         99999999997654333   269999997654

>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus}

Probab=96.23  E-value=0.0051  Score=42.19  Aligned_cols=42  Identities=21%  Similarity=0.264  Sum_probs=34.8

Q ss_pred             CeEEEEEEeCCccCCCCCCCcchHHHHHHHhhhhhccCCCcceEEEEEeeCCCC
Q 046819            5 PTRIIVAVNESTIKGYPHASISSRGAFEWSVQKIIRSNTSGFKLLFLHVQVPDE   58 (80)
Q Consensus         5 ~~rvmVaVDeSe~kgyp~~si~S~~AleWtL~~l~~~~~~~fkLvlLHvqpp~~   58 (80)
                      .++|+||+|.|+         .|..|++|+++-.-..+   -+|.+|||.++..
T Consensus       170 ~~~Ilv~~d~s~---------~s~~al~~a~~la~~~~---~~l~ll~v~~~~~  211 (294)
T 3loq_A          170 FDRVLVAYDFSK---------WADRALEYAKFVVKKTG---GELHIIHVSEDGD  211 (294)
T ss_dssp             TSEEEEECCSSH---------HHHHHHHHHHHHHHHHT---CEEEEEEECSSSC
T ss_pred             CCEEEEEECCCH---------HHHHHHHHHHHHhhhcC---CEEEEEEEccCch
Confidence            579999999999         99999999997654433   2799999987763

>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A*

Probab=95.88  E-value=0.0079  Score=40.45  Aligned_cols=41  Identities=10%  Similarity=-0.030  Sum_probs=32.5

Q ss_pred             CeEEEEEEeCCccCCCCCCCcchHHHHHHHhhhhhccCCCcceEEEEEeeCCC
Q 046819            5 PTRIIVAVNESTIKGYPHASISSRGAFEWSVQKIIRSNTSGFKLLFLHVQVPD   57 (80)
Q Consensus         5 ~~rvmVaVDeSe~kgyp~~si~S~~AleWtL~~l~~~~~~~fkLvlLHvqpp~   57 (80)
                      .++|+|++|.|+         .|..|++|+..-....+.   +|.+|||.++.
T Consensus       154 ~~~ilv~~d~s~---------~~~~al~~a~~la~~~~a---~l~ll~v~~~~  194 (268)
T 3ab8_A          154 LEGALLGYDASE---------SAVRALHALAPLARALGL---GVRVVSVHEDP  194 (268)
T ss_dssp             CCEEEEECCSCH---------HHHHHHHHHHHHHHHHTC---CEEEEEECSSH
T ss_pred             CCEEEEEECCCH---------HHHHHHHHHHHhhhcCCC---EEEEEEEcCcH
Confidence            468999999999         999999998764433332   59999998764

>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis}

Probab=95.38  E-value=0.026  Score=38.75  Aligned_cols=44  Identities=18%  Similarity=0.054  Sum_probs=33.7

Q ss_pred             CeEEEEEEeCCccCCCCCCCcch-------HHHHHHHhhhhhccCCCcceEEEEEeeCCCC
Q 046819            5 PTRIIVAVNESTIKGYPHASISS-------RGAFEWSVQKIIRSNTSGFKLLFLHVQVPDE   58 (80)
Q Consensus         5 ~~rvmVaVDeSe~kgyp~~si~S-------~~AleWtL~~l~~~~~~~fkLvlLHvqpp~~   58 (80)
                      .++|+||+|.|+         ++       ..|++|++.-.....++ -+|.+|||.++..
T Consensus       156 ~~~Ilva~D~s~---------~~~~~~~~s~~al~~a~~la~~~~~~-a~l~ll~v~~~~~  206 (319)
T 3olq_A          156 YGTIVVAANLSN---------EESYHDALNLKLIELTNDLSHRIQKD-PDVHLLSAYPVAP  206 (319)
T ss_dssp             TCEEEEECCCSC---------CSTHHHHHHHHHHHHHHHHHHHHCSS-CCEEEEEEECCCS
T ss_pred             CCeEEEEECCCC---------cchhHHHHHHHHHHHHHHHHHhccCC-CeEEEEEeecCcc
Confidence            579999999999         74       99999998755543112 2799999987764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	80
d2gm3a1	171	c.26.2.4 (A:5-175) Putative ethylene-responsive pr	2e-16

>d2gm3a1 c.26.2.4 (A:5-175) Putative ethylene-responsive protein AT3g01520/F4P13_7 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 171

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Adenine nucleotide alpha hydrolases-like
family: Universal stress protein-like
domain: Putative ethylene-responsive protein AT3g01520/F4P13 7
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 67.2 bits (163), Expect = 2e-16
 Identities = 37/57 (64%), Positives = 47/57 (82%)

Query: 5  PTRIIVAVNESTIKGYPHASISSRGAFEWSVQKIIRSNTSGFKLLFLHVQVPDEDEI 61
          PT+++VAVN STIK YP+ SIS + AFEW+++KI+RSNTS FK+L LHVQV DED  
Sbjct: 1  PTKVMVAVNASTIKDYPNPSISCKRAFEWTLEKIVRSNTSDFKILLLHVQVVDEDGF 57

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	80
d2gm3a1	171	Putative ethylene-responsive protein AT3g01520/F4P	99.71
d2z3va1	135	Hypothetical protein TTHA0895 {Thermus thermophilu	98.24
d1mjha_	160	"Hypothetical" protein MJ0577 {Archaeon Methanococ	98.23
d1jmva_	140	Universal stress protein A, UspA {Haemophilus infl	98.22
d1q77a_	138	Hypothetical protein Aq_178 {Aquifex aeolicus [Tax	97.99
d1tq8a_	147	Hypothetical protein Rv1636 {Mycobacterium tubercu	97.53

>d2gm3a1 c.26.2.4 (A:5-175) Putative ethylene-responsive protein AT3g01520/F4P13_7 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Adenine nucleotide alpha hydrolases-like
family: Universal stress protein-like
domain: Putative ethylene-responsive protein AT3g01520/F4P13 7
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.71  E-value=5.3e-18  Score=109.93  Aligned_cols=55  Identities=67%  Similarity=1.079  Sum_probs=48.7

Q ss_pred             CeEEEEEEeCCccCCCCCCCcchHHHHHHHhhhhhccCCCcceEEEEEeeCCCCC
Q 046819            5 PTRIIVAVNESTIKGYPHASISSRGAFEWSVQKIIRSNTSGFKLLFLHVQVPDED   59 (80)
Q Consensus         5 ~~rvmVaVDeSe~kgyp~~si~S~~AleWtL~~l~~~~~~~fkLvlLHvqpp~~~   59 (80)
                      ++|||||||+|++++||-||++|++||+|+++++++.+.+.++|+++||.++...
T Consensus         1 p~ki~vavd~s~~~~~~~~~~~S~~Al~wal~~~~~~~~~~~~L~~vhv~~~~~~   55 (171)
T d2gm3a1           1 PTKVMVAVNASTIKDYPNPSISCKRAFEWTLEKIVRSNTSDFKILLLHVQVVDED   55 (171)
T ss_dssp             CEEEEEECCBCSSSCTTCBCHHHHHHHHHHHHHTTTTCTTSEEEEEEEEEC----
T ss_pred             CCEEEEEEcCCcccCCCCCCHHHHHHHHHHHHHHHHCCCCCcEEEEEEecccccc
Confidence            6899999999999999999999999999999999998877789999999988755

>d2z3va1 c.26.2.4 (A:2-136) Hypothetical protein TTHA0895 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Adenine nucleotide alpha hydrolases-like
family: Universal stress protein-like
domain: Hypothetical protein TTHA0895
species: Thermus thermophilus [TaxId: 274]

Probab=98.24  E-value=6.9e-07  Score=53.90  Aligned_cols=42  Identities=24%  Similarity=0.287  Sum_probs=35.7

Q ss_pred             eEEEEEEeCCccCCCCCCCcchHHHHHHHhhhhhccCCCcceEEEEEeeCCCCC
Q 046819            6 TRIIVAVNESTIKGYPHASISSRGAFEWSVQKIIRSNTSGFKLLFLHVQVPDED   59 (80)
Q Consensus         6 ~rvmVaVDeSe~kgyp~~si~S~~AleWtL~~l~~~~~~~fkLvlLHvqpp~~~   59 (80)
                      ++|||+||.|+         +|..|++|+++...+.+   .+|.++||.++.+.
T Consensus         2 k~Ilv~~D~s~---------~s~~a~~~a~~~a~~~~---~~l~ll~V~~~~~~   43 (135)
T d2z3va1           2 KTILLAYDGSE---------HARRAAEVAKAEAEAHG---ARLIVVHAYEPVPD   43 (135)
T ss_dssp             CEEEEECCSSH---------HHHHHHHHHHHHHHHHT---CEEEEEEEECCCCT
T ss_pred             CEEEEEECCCH---------HHHHHHHHHHHHHHHcC---CEEEEEEEecCCcc
Confidence            68999999999         99999999998866544   38999999887644

>d1mjha_ c.26.2.4 (A:) "Hypothetical" protein MJ0577 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Adenine nucleotide alpha hydrolases-like
family: Universal stress protein-like
domain: "Hypothetical" protein MJ0577
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=98.23  E-value=4.5e-07  Score=56.17  Aligned_cols=42  Identities=17%  Similarity=0.103  Sum_probs=34.3

Q ss_pred             eEEEEEEeCCccCCCCCCCcchHHHHHHHhhhhhccCCCcceEEEEEeeCCCCC
Q 046819            6 TRIIVAVNESTIKGYPHASISSRGAFEWSVQKIIRSNTSGFKLLFLHVQVPDED   59 (80)
Q Consensus         6 ~rvmVaVDeSe~kgyp~~si~S~~AleWtL~~l~~~~~~~fkLvlLHvqpp~~~   59 (80)
                      +||+||||.|+         .|.+|++|+++-.-+.+   .+|.||||.++...
T Consensus         4 ~~ILvavD~s~---------~s~~al~~a~~la~~~~---a~l~llhV~~~~~~   45 (160)
T d1mjha_           4 KKILYPTDFSE---------TAEIALKHVKAFKTLKA---EEVILLHVIDEREI   45 (160)
T ss_dssp             CEEEEECCSCH---------HHHHHHHHHHHTCCSSC---CEEEEEEEEEGGGT
T ss_pred             CeEEEEECCCH---------HHHHHHHHHHHHHHhcC---CEEEEEEecccccc
Confidence            68999999999         99999999998543323   38999999877643

>d1jmva_ c.26.2.4 (A:) Universal stress protein A, UspA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Adenine nucleotide alpha hydrolases-like
family: Universal stress protein-like
domain: Universal stress protein A, UspA
species: Haemophilus influenzae [TaxId: 727]

Probab=98.22  E-value=9e-07  Score=53.30  Aligned_cols=42  Identities=33%  Similarity=0.309  Sum_probs=35.3

Q ss_pred             eEEEEEEeCCccCCCCCCCcchHHHHHHHhhhhhccCCCcceEEEEEeeCCCCC
Q 046819            6 TRIIVAVNESTIKGYPHASISSRGAFEWSVQKIIRSNTSGFKLLFLHVQVPDED   59 (80)
Q Consensus         6 ~rvmVaVDeSe~kgyp~~si~S~~AleWtL~~l~~~~~~~fkLvlLHvqpp~~~   59 (80)
                      ++||||||.|+         +|..|++|+.....+.+   .+|.++||.++.+.
T Consensus         3 k~ILv~vD~s~---------~s~~al~~A~~~a~~~~---~~v~~lhv~~~~~~   44 (140)
T d1jmva_           3 KHILVAVDLSE---------ESPILLKKAVGIAKRHD---AKLSIIHVDVNFSD   44 (140)
T ss_dssp             SEEEEEECCST---------THHHHHHHHHHHHHHHT---CEEEEEEEEECCGG
T ss_pred             CeEEEEECCCH---------HHHHHHHHHHHHHHHcC---CeEEEEEEeeeccc
Confidence            68999999999         99999999998766544   27999999877644

>d1q77a_ c.26.2.4 (A:) Hypothetical protein Aq_178 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Adenine nucleotide alpha hydrolases-like
family: Universal stress protein-like
domain: Hypothetical protein Aq 178
species: Aquifex aeolicus [TaxId: 63363]

Probab=97.99  E-value=6.1e-06  Score=49.08  Aligned_cols=40  Identities=15%  Similarity=0.113  Sum_probs=33.4

Q ss_pred             CeEEEEEEeCCccCCCCCCCcchHHHHHHHhhhhhccCCCcceEEEEEeeCC
Q 046819            5 PTRIIVAVNESTIKGYPHASISSRGAFEWSVQKIIRSNTSGFKLLFLHVQVP   56 (80)
Q Consensus         5 ~~rvmVaVDeSe~kgyp~~si~S~~AleWtL~~l~~~~~~~fkLvlLHvqpp   56 (80)
                      .++|+|++|-|+         .|..||+|+.+-.-+.+   -+|.+|||-.+
T Consensus         4 mk~ILv~~D~S~---------~s~~al~~A~~~a~~~~---a~l~llhv~~~   43 (138)
T d1q77a_           4 MKVLLVLTDAYS---------DCEKAITYAVNFSEKLG---AELDILAVLED   43 (138)
T ss_dssp             CEEEEEEESTTC---------CCHHHHHHHHHHHTTTC---CEEEEEEECHH
T ss_pred             CCEEEEEEeCCH---------HHHHHHHHHHHhhhhcc---ceEEEEEEccC
Confidence            588999999999         99999999999665433   38999999543

>d1tq8a_ c.26.2.4 (A:) Hypothetical protein Rv1636 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Adenine nucleotide alpha hydrolases-like
family: Universal stress protein-like
domain: Hypothetical protein Rv1636
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.53  E-value=6.9e-05  Score=45.05  Aligned_cols=40  Identities=23%  Similarity=0.310  Sum_probs=28.9

Q ss_pred             CCeEEEEEEeCCccCCCCCCCcchHHHHHHHhhhhhccCCCcceEEEEEeeCC
Q 046819            4 EPTRIIVAVNESTIKGYPHASISSRGAFEWSVQKIIRSNTSGFKLLFLHVQVP   56 (80)
Q Consensus         4 e~~rvmVaVDeSe~kgyp~~si~S~~AleWtL~~l~~~~~~~fkLvlLHvqpp   56 (80)
                      .-++|+|+||.|+         .|.+||+|+++-. ...  . .++++|+..+
T Consensus         4 ~yk~ILv~vD~s~---------~s~~al~~A~~la-~~~--~-~~~~~~~~~~   43 (147)
T d1tq8a_           4 AYKTVVVGTDGSD---------SSMRAVDRAAQIA-GAD--A-KLIIASAYLP   43 (147)
T ss_dssp             CCCEEEEECCSSH---------HHHHHHHHHHHHH-TTT--S-EEEEEEECCC
T ss_pred             CCCEEEEEECCCH---------HHHHHHHHHHHHH-hcC--C-CEEEEEEEec
Confidence            3479999999999         9999999999743 322  2 3455555433